Query 005687
Match_columns 683
No_of_seqs 401 out of 1556
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 12:13:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005687.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005687hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1865 Ubiquitin carboxyl-ter 100.0 2.1E-69 4.6E-74 586.2 27.2 310 100-417 101-410 (545)
2 cd02663 Peptidase_C19G A subfa 100.0 9.2E-60 2E-64 500.2 27.0 280 109-415 1-300 (300)
3 cd02668 Peptidase_C19L A subfa 100.0 3.4E-59 7.3E-64 501.1 29.8 293 109-415 1-324 (324)
4 cd02660 Peptidase_C19D A subfa 100.0 4.7E-59 1E-63 499.6 29.5 304 108-415 1-328 (328)
5 cd02661 Peptidase_C19E A subfa 100.0 1.3E-58 2.8E-63 489.0 27.8 302 107-415 1-304 (304)
6 cd02664 Peptidase_C19H A subfa 100.0 7.5E-59 1.6E-63 499.1 26.0 279 109-415 1-327 (327)
7 cd02671 Peptidase_C19O A subfa 100.0 9.1E-58 2E-62 490.8 27.2 276 106-415 23-332 (332)
8 cd02657 Peptidase_C19A A subfa 100.0 2.4E-57 5.3E-62 481.7 27.8 285 109-415 1-305 (305)
9 cd02667 Peptidase_C19K A subfa 100.0 2.4E-57 5.3E-62 477.0 23.4 249 109-415 1-279 (279)
10 cd02658 Peptidase_C19B A subfa 100.0 1.4E-56 3E-61 477.5 27.1 279 109-415 1-311 (311)
11 cd02659 peptidase_C19C A subfa 100.0 1.1E-55 2.3E-60 474.7 29.4 298 107-418 2-333 (334)
12 cd02669 Peptidase_C19M A subfa 100.0 1E-54 2.2E-59 484.2 25.3 361 36-415 46-440 (440)
13 COG5560 UBP12 Ubiquitin C-term 100.0 1E-54 2.3E-59 471.1 14.5 308 106-417 264-822 (823)
14 cd02662 Peptidase_C19F A subfa 100.0 1.3E-50 2.9E-55 417.0 22.5 211 109-415 1-240 (240)
15 COG5533 UBP5 Ubiquitin C-termi 100.0 6E-50 1.3E-54 404.3 19.4 307 105-417 69-414 (415)
16 cd02674 Peptidase_C19R A subfa 100.0 9.9E-48 2.1E-52 390.9 19.3 222 109-415 1-230 (230)
17 COG5077 Ubiquitin carboxyl-ter 100.0 2.8E-48 6.1E-53 426.6 10.2 319 107-453 193-538 (1089)
18 cd02666 Peptidase_C19J A subfa 100.0 5.3E-47 1.1E-51 407.8 15.6 275 107-415 1-343 (343)
19 cd02665 Peptidase_C19I A subfa 100.0 4.5E-46 9.7E-51 378.2 19.4 219 109-415 1-228 (228)
20 KOG1868 Ubiquitin C-terminal h 100.0 1.2E-46 2.6E-51 425.8 12.3 310 106-419 300-648 (653)
21 KOG1866 Ubiquitin carboxyl-ter 100.0 4.9E-47 1.1E-51 416.8 8.3 306 102-419 90-436 (944)
22 PF00443 UCH: Ubiquitin carbox 100.0 5.1E-45 1.1E-49 373.9 22.4 254 107-414 1-269 (269)
23 KOG0944 Ubiquitin-specific pro 100.0 3.5E-44 7.5E-49 392.7 20.4 295 104-417 304-762 (763)
24 KOG1867 Ubiquitin-specific pro 100.0 1.9E-44 4.1E-49 401.3 16.3 307 107-418 161-485 (492)
25 cd02673 Peptidase_C19Q A subfa 100.0 7.3E-44 1.6E-48 367.4 19.2 236 110-415 2-245 (245)
26 cd02257 Peptidase_C19 Peptidas 100.0 2.3E-42 5E-47 348.7 22.3 238 109-415 1-255 (255)
27 KOG1872 Ubiquitin-specific pro 100.0 5.2E-43 1.1E-47 373.7 10.2 381 13-418 6-470 (473)
28 KOG4598 Putative ubiquitin-spe 100.0 2.7E-42 5.8E-47 375.5 5.0 271 107-419 87-443 (1203)
29 KOG1873 Ubiquitin-specific pro 100.0 7.8E-42 1.7E-46 377.2 6.3 308 106-417 204-877 (877)
30 KOG1863 Ubiquitin carboxyl-ter 100.0 1.4E-40 2.9E-45 402.6 16.2 324 103-451 166-510 (1093)
31 KOG1870 Ubiquitin C-terminal h 100.0 2.2E-40 4.7E-45 392.1 17.0 306 107-418 246-842 (842)
32 COG5207 UBP14 Isopeptidase T [ 100.0 3.9E-39 8.5E-44 342.4 17.4 295 107-416 303-748 (749)
33 cd02672 Peptidase_C19P A subfa 100.0 1.8E-38 3.8E-43 331.6 13.3 234 106-415 14-268 (268)
34 PF13423 UCH_1: Ubiquitin carb 100.0 7.4E-35 1.6E-39 308.8 22.5 279 108-396 1-295 (295)
35 cd02670 Peptidase_C19N A subfa 100.0 2.1E-34 4.5E-39 295.2 15.9 198 109-415 1-241 (241)
36 KOG1864 Ubiquitin-specific pro 100.0 2.7E-33 5.9E-38 316.6 14.9 308 107-418 232-573 (587)
37 KOG1871 Ubiquitin-specific pro 100.0 2.5E-30 5.5E-35 270.2 13.2 306 105-417 26-419 (420)
38 KOG2026 Spindle pole body prot 99.9 1.8E-22 3.9E-27 210.6 11.3 285 106-417 133-441 (442)
39 KOG1275 PAB-dependent poly(A) 99.8 1.3E-18 2.9E-23 196.7 15.9 300 104-414 496-860 (1118)
40 PF15499 Peptidase_C98: Ubiqui 98.7 9.9E-08 2.1E-12 96.8 12.2 131 225-396 118-253 (275)
41 KOG3556 Familial cylindromatos 96.8 0.00067 1.4E-08 74.8 2.7 35 305-339 516-550 (724)
42 KOG1864 Ubiquitin-specific pro 96.5 0.0038 8.2E-08 72.3 5.9 102 110-212 34-152 (587)
43 KOG1887 Ubiquitin carboxyl-ter 94.2 0.0091 2E-07 69.8 -1.3 218 192-418 547-791 (806)
44 cd01813 UBP_N UBP ubiquitin pr 91.1 0.16 3.5E-06 42.9 2.4 54 14-77 4-68 (74)
45 PF05408 Peptidase_C28: Foot-a 89.3 0.18 3.9E-06 49.5 1.4 47 362-418 130-176 (193)
46 PF05408 Peptidase_C28: Foot-a 68.5 9 0.0002 37.9 5.1 22 108-129 34-55 (193)
47 PF08715 Viral_protease: Papai 65.8 11 0.00024 40.8 5.7 74 109-209 104-178 (320)
48 COG3478 Predicted nucleic-acid 60.7 7 0.00015 32.0 2.2 36 288-323 3-40 (68)
49 PF14353 CpXC: CpXC protein 59.4 5.5 0.00012 37.0 1.7 49 241-300 1-49 (128)
50 cd01800 SF3a120_C Ubiquitin-li 48.6 14 0.00031 30.9 2.4 50 18-77 6-63 (76)
51 PF02099 Josephin: Josephin; 41.5 32 0.00069 33.5 3.8 33 361-399 99-131 (157)
52 PHA02998 RNA polymerase subuni 37.9 36 0.00077 33.6 3.5 19 231-249 132-151 (195)
53 cd01812 BAG1_N Ubiquitin-like 33.6 43 0.00093 27.1 3.0 39 23-68 12-58 (71)
54 PF01473 CW_binding_1: Putativ 27.7 65 0.0014 19.6 2.3 15 379-394 2-16 (19)
55 KOG1867 Ubiquitin-specific pro 26.7 20 0.00043 41.3 -0.3 29 106-134 76-104 (492)
56 PF09855 DUF2082: Nucleic-acid 24.1 54 0.0012 27.0 1.9 32 290-321 1-34 (64)
57 PF10748 DUF2531: Protein of u 23.0 1.1E+02 0.0023 29.0 3.9 34 357-396 34-67 (132)
58 PF03292 Pox_P4B: Poxvirus P4B 21.4 1.2E+02 0.0027 35.5 4.6 79 312-403 479-577 (666)
59 KOG2314 Translation initiation 20.7 53 0.0011 37.9 1.6 54 572-644 587-643 (698)
No 1
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-69 Score=586.19 Aligned_cols=310 Identities=46% Similarity=0.828 Sum_probs=290.9
Q ss_pred ccCCCCCCCccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCchhhHHHHHHHHHHHHHhcCCCcccchhHH
Q 005687 100 QIKPTGVGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSPRKLV 179 (683)
Q Consensus 100 e~~p~~~p~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~ll~~L~~l~~~~~~ss~~~i~P~~fl 179 (683)
.+.+..+++||.|+|||||+|||||||.++|||.+||++..|...|+ ...+|++|+|+.++...+...+.+|.|..|+
T Consensus 101 ~~~~~~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~--~~~~C~lc~~q~hi~~A~~~~g~pisP~~i~ 178 (545)
T KOG1865|consen 101 SDRPAAVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCH--RAKFCMLCTFQAHITRALHNPGHPISPSQIL 178 (545)
T ss_pred ccccccCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhcc--ccCeeeehHHHHHHHHHhcCCCCccChHHHH
Confidence 34467889999999999999999999999999999999999999884 6789999999999988888888899999999
Q ss_pred hhhhhccccccccccccHHHHHHHHHHHHHHhhccCCCCccccccCCCccceeecceEEEEEEEecCCCCccccccccee
Q 005687 180 DNLNYISSFFQRYQQEDAHEFLQCLLDRLESCCLDSKTKDESLSSQGDNIVQRVFGGCLISKLQCCNCGSCSDTYEPLID 259 (683)
Q Consensus 180 ~~L~~~~~~f~~~~QQDA~Efl~~LLd~L~~e~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C~~Cg~~S~~~E~F~~ 259 (683)
..|+.+...|..|.|+||||||+++||.|+..++ ..........+..++|+++|+|.++++++|..|.++++++|+.++
T Consensus 179 s~L~~I~~~f~~grQEDAHEFLr~~vd~mqk~cL-~g~~~~~~~sq~ttlv~~iFGG~LrS~vkC~~C~~vS~tyE~~~d 257 (545)
T KOG1865|consen 179 SNLRNISAHFGRGRQEDAHEFLRFTVDAMQKACL-PGHKQVDPRSQDTTLVHQIFGGYLRSQIKCLHCKGVSDTYEPYLD 257 (545)
T ss_pred HhhhhhcccccCCchhhHHHHHHHHHHHHHHhhc-CCCccCCcccccceehhhhhccchhhceecccCCCcccccccccc
Confidence 9999999999999999999999999999999987 334444566788999999999999999999999999999999999
Q ss_pred eeeeecccCChHHHHHhhhhhccccCCCCcccccccCccceeeeeeeeecCCceeEEEEeeeeecCceeeeecceeecCc
Q 005687 260 LSLEIEDVGSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTDGSYVVKIDKHVEFPL 339 (683)
Q Consensus 260 LsL~I~~~~sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K~~~I~~LP~vLiIhLkRF~~d~~~~~Ki~~~V~FP~ 339 (683)
|+|+|.+..+|+++|++|++.|.++ |+|+|+|++|++++.|.|+++|.++|+||+||||||+. ++..||.+.|.||+
T Consensus 258 ltvei~d~~sl~~AL~qFt~~E~L~-gen~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF~~--~~~gKI~K~I~fPE 334 (545)
T KOG1865|consen 258 LTLEIQDASSLQQALEQFTKPEKLD-GENAYHCGRCKQKVPASKQLTIHRAPNVLTLHLKRFSN--GTGGKISKPVSFPE 334 (545)
T ss_pred eEEEeccchhHHHHHHHhhhHHhhC-CccccccchhhhhCcccceeeeecCCceEEEeeehhcc--CcccccccccCCcc
Confidence 9999999999999999999999997 69999999999999999999999999999999999988 56789999999999
Q ss_pred cccccccccCCCCCCcceeEEEeEEEEeecCCCCCCcEEEEEEcCCCeEEEEeCCcceEeccccccCCCeEEEEEEEc
Q 005687 340 ELDLKPYTSGGQNSDVELKYHLYAIVEHMGSSPTCGHYFSYIRSSPDTWHRLNDSRVTRVEEEFVLSQDAYILFYAKQ 417 (683)
Q Consensus 340 ~LDLs~y~~~~~~~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr~~~~~Wy~fNDs~Vs~vs~eeV~s~~AYiLfY~R~ 417 (683)
.|||.+||..+. ..+.+|.|||||+|.|.+..+|||+||||..+|.||+|||+.|+.++.+.|+++.||||||.|.
T Consensus 335 ~LDl~PyMS~~~--e~s~~Y~LYavlVH~g~~~~~GHY~cYvks~~g~Wy~~DDS~V~~~~~~~VLsq~AYmLfY~R~ 410 (545)
T KOG1865|consen 335 TLDLQPYMSQPN--EGSTVYKLYAVLVHLGTSCHSGHYFCYVKSQNGQWYKMDDSEVTQSSIESVLSQQAYILFYARK 410 (545)
T ss_pred cccccccccCCC--CCCceEEEEEEEEeccccccCCceEEEEEcCCCceEEccCceeeeccccceecccceEEEEEee
Confidence 999999998543 3578999999999999999999999999999999999999999999999999999999999997
No 2
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=9.2e-60 Score=500.19 Aligned_cols=280 Identities=33% Similarity=0.605 Sum_probs=247.9
Q ss_pred ccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCchhhHHHHHHHHHHHHHhcCC--CcccchhHHhhhhhcc
Q 005687 109 GLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSG--KVLSPRKLVDNLNYIS 186 (683)
Q Consensus 109 GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~ll~~L~~l~~~~~~ss~--~~i~P~~fl~~L~~~~ 186 (683)
||.|+||||||||+||+|++ .+++++|+.+|..++.... ..++|..|+++|+...
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~-----------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~~~ 57 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF-----------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKREN 57 (300)
T ss_pred CccCCCcceehhHHHHHhhh-----------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhhc
Confidence 89999999999999999997 3678899999987776543 4699999999999999
Q ss_pred ccccccccccHHHHHHHHHHHHHHhhccCCCCc--------cccccCCCccceeecceEEEEEEEecCCCCcccccccce
Q 005687 187 SFFQRYQQEDAHEFLQCLLDRLESCCLDSKTKD--------ESLSSQGDNIVQRVFGGCLISKLQCCNCGSCSDTYEPLI 258 (683)
Q Consensus 187 ~~f~~~~QQDA~Efl~~LLd~L~~e~~~~~~~~--------~~~~~~~~s~I~~lF~G~l~s~i~C~~Cg~~S~~~E~F~ 258 (683)
+.|..++||||+|||..|||.|++++....... ........++|.++|+|++.++++|..|++++.+.|+|+
T Consensus 58 ~~f~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~ 137 (300)
T cd02663 58 ELFDNYMHQDAHEFLNFLLNEIAEILDAERKAEKANRKLNNNNNAEPQPTWVHEIFQGILTNETRCLTCETVSSRDETFL 137 (300)
T ss_pred CCCCCCccccHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCcCCCChhhhCceEEEeeEEeCCCCCCccccceeE
Confidence 999999999999999999999999876432110 111234567899999999999999999999999999999
Q ss_pred eeeeeecccCChHHHHHhhhhhccccCCCCcccccccCccceeeeeeeeecCCceeEEEEeeeeecCc--eeeeecceee
Q 005687 259 DLSLEIEDVGSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTDGS--YVVKIDKHVE 336 (683)
Q Consensus 259 ~LsL~I~~~~sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K~~~I~~LP~vLiIhLkRF~~d~~--~~~Ki~~~V~ 336 (683)
+|+|+|+...+|+++|+.|+..|.+++ +++|.|++|+.++.+.|+..|.++|+||+|||+||.++.. ...|+...|.
T Consensus 138 ~Lsl~i~~~~sl~~~L~~~~~~E~l~~-~~~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~ 216 (300)
T cd02663 138 DLSIDVEQNTSITSCLRQFSATETLCG-RNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVV 216 (300)
T ss_pred EeccCCCCcCCHHHHHHHhhcccccCC-CCcEECCCCCCceeEEEEEEeccCCceeEEEEEeEEeecccCCceecCceEe
Confidence 999999999999999999999999964 7889999999999999999999999999999999999864 3679999999
Q ss_pred cCccccccccccCCCCCCcceeEEEeEEEEeecCCCCCCcEEEEEEcCCCeEEEEeCCcceEecccccc--------CCC
Q 005687 337 FPLELDLKPYTSGGQNSDVELKYHLYAIVEHMGSSPTCGHYFSYIRSSPDTWHRLNDSRVTRVEEEFVL--------SQD 408 (683)
Q Consensus 337 FP~~LDLs~y~~~~~~~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr~~~~~Wy~fNDs~Vs~vs~eeV~--------s~~ 408 (683)
||.+|+|..+.... ......|+|+|||+|.|.++++|||+||+|. +++||+|||+.|+++++++|. +.+
T Consensus 217 fp~~L~~~~~~~~~--~~~~~~Y~L~~vi~H~G~~~~~GHY~a~~k~-~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~~ 293 (300)
T cd02663 217 FPLELRLFNTTDDA--ENPDRLYELVAVVVHIGGGPNHGHYVSIVKS-HGGWLLFDDETVEKIDENAVEEFFGDSPNQAT 293 (300)
T ss_pred cCcEEecccccccc--CCCCeEEEEEEEEEEecCCCCCCceEEEEEC-CCcEEEEcCCceEEcCHHHHHHhcCCCCCCCc
Confidence 99999998875432 2345799999999999987899999999999 899999999999999999886 578
Q ss_pred eEEEEEE
Q 005687 409 AYILFYA 415 (683)
Q Consensus 409 AYiLfY~ 415 (683)
||||||+
T Consensus 294 aYiLfY~ 300 (300)
T cd02663 294 AYVLFYQ 300 (300)
T ss_pred eEEEEeC
Confidence 9999995
No 3
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.4e-59 Score=501.05 Aligned_cols=293 Identities=28% Similarity=0.478 Sum_probs=255.5
Q ss_pred ccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCC-------CCCCCchhhHHHHHHHHHHHHHhcCCCcccchhHHhh
Q 005687 109 GLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRP-------CDGATEGFCVICALRDHIELSLASSGKVLSPRKLVDN 181 (683)
Q Consensus 109 GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~-------~~~~~~~~~ll~~L~~l~~~~~~ss~~~i~P~~fl~~ 181 (683)
||.|+||||||||+||+|+++|+|+++++....... ........+++++|+.+|..++.+....++|..|+.+
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f~~~ 80 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGFVKA 80 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCCCceEChHHHHHH
Confidence 899999999999999999999999999987643321 0011123579999999999888888889999999999
Q ss_pred hhhccccccccccccHHHHHHHHHHHHHHhhccCCCCccccccCCCccceeecceEEEEEEEecCCCCcccccccceeee
Q 005687 182 LNYISSFFQRYQQEDAHEFLQCLLDRLESCCLDSKTKDESLSSQGDNIVQRVFGGCLISKLQCCNCGSCSDTYEPLIDLS 261 (683)
Q Consensus 182 L~~~~~~f~~~~QQDA~Efl~~LLd~L~~e~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C~~Cg~~S~~~E~F~~Ls 261 (683)
|+ |..++||||+|||..||+.|++++.... .....++|.++|+|++..+++|..|+..+.+.|+|+.|+
T Consensus 81 l~-----~~~~~QqDa~EFl~~lLd~L~~~l~~~~------~~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~l~ 149 (324)
T cd02668 81 LG-----LDTGQQQDAQEFSKLFLSLLEAKLSKSK------NPDLKNIVQDLFRGEYSYVTQCSKCGRESSLPSKFYELE 149 (324)
T ss_pred hC-----CCCccccCHHHHHHHHHHHHHHHHhhcc------CCcccchhhhhcceEEEEEEEeCCCCCccccccccEEEE
Confidence 85 5678999999999999999998875421 123457899999999999999999999999999999999
Q ss_pred eeecccCChHHHHHhhhhhccccCCCCcccccccCccceeeeeeeeecCCceeEEEEeeeeecC--ceeeeecceeecCc
Q 005687 262 LEIEDVGSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTDG--SYVVKIDKHVEFPL 339 (683)
Q Consensus 262 L~I~~~~sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K~~~I~~LP~vLiIhLkRF~~d~--~~~~Ki~~~V~FP~ 339 (683)
|+|++..+|+++|+.|+..|.+++ +++|.|++|++++.+.|+..|.++|+||+|||+||.++. +...|++..|.||.
T Consensus 150 l~i~~~~sl~~~L~~~~~~e~l~g-~~~~~C~~C~~~~~a~k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~fp~ 228 (324)
T cd02668 150 LQLKGHKTLEECIDEFLKEEQLTG-DNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFPE 228 (324)
T ss_pred EEecccCCHHHHHHHhhCceecCC-CccccCCCCCceeeeEEEEEecCCCCeEEEEEEcceeecccCcceeCCcEEECCC
Confidence 999988999999999999999864 788999999999999999999999999999999999875 34679999999999
Q ss_pred cccccccccCCCCCCcceeEEEeEEEEeecCCCCCCcEEEEEEcC-CCeEEEEeCCcceEeccccc--------------
Q 005687 340 ELDLKPYTSGGQNSDVELKYHLYAIVEHMGSSPTCGHYFSYIRSS-PDTWHRLNDSRVTRVEEEFV-------------- 404 (683)
Q Consensus 340 ~LDLs~y~~~~~~~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr~~-~~~Wy~fNDs~Vs~vs~eeV-------------- 404 (683)
+|||.+|+.... .....|+|+|||+|.|.++++|||+||+|.. +++||+|||+.|++++++.|
T Consensus 229 ~Ldl~~~~~~~~--~~~~~Y~L~~vI~H~G~~~~~GHY~~~~k~~~~~~W~~fdD~~V~~i~~~~~~~~~~~~~~~~~~~ 306 (324)
T cd02668 229 ILDMGEYLAESD--EGSYVYELSGVLIHQGVSAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKLGNSEDPAKPRKS 306 (324)
T ss_pred eEechhhccccc--CCCcEEEEEEEEEEcCCCCCCEeeEEEEECCCCCcEEEEECCceEEcCHHHhhccccccccccccc
Confidence 999999986542 3467899999999999888999999999986 58999999999999987755
Q ss_pred -------cCCCeEEEEEE
Q 005687 405 -------LSQDAYILFYA 415 (683)
Q Consensus 405 -------~s~~AYiLfY~ 415 (683)
.+..||||||+
T Consensus 307 ~~~~~~~~~~~~y~l~y~ 324 (324)
T cd02668 307 EIKKGTHSSRTAYMLVYK 324 (324)
T ss_pred ccCCCccccCceEEEEeC
Confidence 24689999996
No 4
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.7e-59 Score=499.56 Aligned_cols=304 Identities=37% Similarity=0.626 Sum_probs=264.5
Q ss_pred CccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCchhhHHHHHHHHHHHHHhc-CCCcccchhHHhhhhhcc
Q 005687 108 AGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLAS-SGKVLSPRKLVDNLNYIS 186 (683)
Q Consensus 108 ~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~ll~~L~~l~~~~~~s-s~~~i~P~~fl~~L~~~~ 186 (683)
+||.|+||||||||+||+|+++|+|+++|+...+...+.......|++++|+.+|..++.. ....+.|..|+.+++...
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~~~ 80 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYSGDRSPYGPINLLYLSWKHS 80 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccccccCCccccHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhc
Confidence 5999999999999999999999999999988655432223445678999999999877443 345789999999999888
Q ss_pred ccccccccccHHHHHHHHHHHHHHhhccCCCCccccccCCCccceeecceEEEEEEEecCCCCcccccccceeeeeeecc
Q 005687 187 SFFQRYQQEDAHEFLQCLLDRLESCCLDSKTKDESLSSQGDNIVQRVFGGCLISKLQCCNCGSCSDTYEPLIDLSLEIED 266 (683)
Q Consensus 187 ~~f~~~~QQDA~Efl~~LLd~L~~e~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C~~Cg~~S~~~E~F~~LsL~I~~ 266 (683)
+.|.++.||||+|||.+||+.|++++...... ........++|.++|+|.+.+.++|..|++.+.+.|+|+.|+|+|+.
T Consensus 81 ~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~-~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~ 159 (328)
T cd02660 81 RNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNE-ANDESHCNCIIHQTFSGSLQSSVTCQRCGGVSTTVDPFLDLSLDIPN 159 (328)
T ss_pred hhhcccccccHHHHHHHHHHHHHHHhhccccc-ccccccCCceeEEecccEEEeeeEcCCCCCccceecccceeeeeccc
Confidence 88999999999999999999999987653221 11123346799999999999999999999999999999999999986
Q ss_pred c---------------CChHHHHHhhhhhccccCCCCcccccccCccceeeeeeeeecCCceeEEEEeeeeecC-ceeee
Q 005687 267 V---------------GSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTDG-SYVVK 330 (683)
Q Consensus 267 ~---------------~sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K~~~I~~LP~vLiIhLkRF~~d~-~~~~K 330 (683)
. .+|+++|+.|+..|.+++ .+ |.|++|+.++.+.++..|.++|++|+|||+||.++. +...|
T Consensus 160 ~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~~~~-~~-~~C~~C~~~~~~~~~~~i~~lP~~Lii~lkRf~~~~~~~~~K 237 (328)
T cd02660 160 KSTPSWALGESGVSGTPTLSDCLDRFTRPEKLGD-FA-YKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSLNKTSRK 237 (328)
T ss_pred cccccccccccCCCCCCCHHHHHHHhcCccccCC-CC-ccCCCCCCccceEEEEEecCCCceeEEEEEeEEecCCCCCcC
Confidence 5 799999999999999965 44 999999999999999999999999999999999987 45679
Q ss_pred ecceeecCccccccccccCC-------CCCCcceeEEEeEEEEeecCCCCCCcEEEEEEcCCCeEEEEeCCcceEecccc
Q 005687 331 IDKHVEFPLELDLKPYTSGG-------QNSDVELKYHLYAIVEHMGSSPTCGHYFSYIRSSPDTWHRLNDSRVTRVEEEF 403 (683)
Q Consensus 331 i~~~V~FP~~LDLs~y~~~~-------~~~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr~~~~~Wy~fNDs~Vs~vs~ee 403 (683)
+...|.||.+|||.+|+... ........|+|+|||+|.|. .++|||+||+|..+++||+|||+.|+++++++
T Consensus 238 ~~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~-~~~GHY~~~~~~~~~~W~~~nD~~V~~~~~~~ 316 (328)
T cd02660 238 IDTYVQFPLELNMTPYTSSSIGDTQDSNSLDPDYTYDLFAVVVHKGT-LDTGHYTAYCRQGDGQWFKFDDAMITRVSEEE 316 (328)
T ss_pred CCcEEeCCCEechhhhcccccccccccccCCCCceEEEEEEEEeecc-CCCCcEEEEEECCCCcEEEEECCeeEECCHHH
Confidence 99999999999999999752 12345689999999999996 78899999999977999999999999999999
Q ss_pred ccCCCeEEEEEE
Q 005687 404 VLSQDAYILFYA 415 (683)
Q Consensus 404 V~s~~AYiLfY~ 415 (683)
|...+||||||.
T Consensus 317 v~~~~ayil~Y~ 328 (328)
T cd02660 317 VLKSQAYLLFYH 328 (328)
T ss_pred hcCCCcEEEEeC
Confidence 999999999994
No 5
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.3e-58 Score=488.95 Aligned_cols=302 Identities=50% Similarity=0.868 Sum_probs=268.4
Q ss_pred CCccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCchhhHHHHHHHHHHHHHhcCCCcccchhHHhhhhhcc
Q 005687 107 GAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSPRKLVDNLNYIS 186 (683)
Q Consensus 107 p~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~ll~~L~~l~~~~~~ss~~~i~P~~fl~~L~~~~ 186 (683)
|+||.|+||||||||+||+|+++|+|++++++..+.... .....+++++|+.++..++..++..+.|..|..+|+...
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~l~~~~ 78 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDC--CNEGFCMMCALEAHVERALASSGPGSAPRIFSSNLKQIS 78 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhc--cCCcchHHHHHHHHHHHHHhCCCCccChHHHHHHHHHHH
Confidence 689999999999999999999999999999876543322 334568999999999888888889999999999999999
Q ss_pred ccccccccccHHHHHHHHHHHHHHhhccCCCCc--cccccCCCccceeecceEEEEEEEecCCCCcccccccceeeeeee
Q 005687 187 SFFQRYQQEDAHEFLQCLLDRLESCCLDSKTKD--ESLSSQGDNIVQRVFGGCLISKLQCCNCGSCSDTYEPLIDLSLEI 264 (683)
Q Consensus 187 ~~f~~~~QQDA~Efl~~LLd~L~~e~~~~~~~~--~~~~~~~~s~I~~lF~G~l~s~i~C~~Cg~~S~~~E~F~~LsL~I 264 (683)
+.|..+.||||+|||.+||+.|++++....... ........++|.++|+|++.+.++|..|+..+.+.|+|+.|+|+|
T Consensus 79 ~~f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~~~~l~l~i 158 (304)
T cd02661 79 KHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSSQETTLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDI 158 (304)
T ss_pred HhhcCcchhhHHHHHHHHHHHHHHHHhhhcccccccCccccCCChhhhcCCcEEeeeEEeCCCCCCcCccccceeeeeec
Confidence 999999999999999999999998765432211 112234567999999999999999999999999999999999999
Q ss_pred cccCChHHHHHhhhhhccccCCCCcccccccCccceeeeeeeeecCCceeEEEEeeeeecCceeeeecceeecCcccccc
Q 005687 265 EDVGSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTDGSYVVKIDKHVEFPLELDLK 344 (683)
Q Consensus 265 ~~~~sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K~~~I~~LP~vLiIhLkRF~~d~~~~~Ki~~~V~FP~~LDLs 344 (683)
+...+|+++|+.++..|.+++ ++.|.|++|++...+.++..|.++|++|+|||+||.++ ...|+.+.|.||.+|||.
T Consensus 159 ~~~~~l~~~l~~~~~~e~~~~-~~~~~C~~C~~~~~~~~~~~i~~~P~iL~i~l~Rf~~~--~~~Ki~~~v~f~~~L~l~ 235 (304)
T cd02661 159 KGADSLEDALEQFTKPEQLDG-ENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNF--RGGKINKQISFPETLDLS 235 (304)
T ss_pred CCCCcHHHHHHHhcCceeeCC-CCCeeCCCCCCccceEEEEEEecCCcEEEEEEeccccC--CccccCCeEecCCeechh
Confidence 998999999999999998864 67899999999999999999999999999999999988 456999999999999999
Q ss_pred ccccCCCCCCcceeEEEeEEEEeecCCCCCCcEEEEEEcCCCeEEEEeCCcceEeccccccCCCeEEEEEE
Q 005687 345 PYTSGGQNSDVELKYHLYAIVEHMGSSPTCGHYFSYIRSSPDTWHRLNDSRVTRVEEEFVLSQDAYILFYA 415 (683)
Q Consensus 345 ~y~~~~~~~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr~~~~~Wy~fNDs~Vs~vs~eeV~s~~AYiLfY~ 415 (683)
+|+.... .....|+|+|||+|.|.++++|||+||+|..+++||+|||+.|+++++++|.+..||||||.
T Consensus 236 ~~~~~~~--~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aYil~Y~ 304 (304)
T cd02661 236 PYMSQPN--DGPLKYKLYAVLVHSGFSPHSGHYYCYVKSSNGKWYNMDDSKVSPVSIETVLSQKAYILFYI 304 (304)
T ss_pred hccccCC--CCCceeeEEEEEEECCCCCCCcCCEEEEECCCCCEEEEeCCeeEECCHHHhcCCCcEEEEeC
Confidence 9987632 34679999999999998779999999999988999999999999999999999999999994
No 6
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.5e-59 Score=499.13 Aligned_cols=279 Identities=32% Similarity=0.540 Sum_probs=243.7
Q ss_pred ccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCchhhHHHHHHHHHHHHHhcCCCcccchh-HHhhhhhccc
Q 005687 109 GLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSPRK-LVDNLNYISS 187 (683)
Q Consensus 109 GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~ll~~L~~l~~~~~~ss~~~i~P~~-fl~~L~~~~~ 187 (683)
||.|+||||||||+||+|+++|+||++|++...+. .....+++++|+.+|..+.......+.|.. |+.+++ .+
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~----~~~~~~~~~~L~~lf~~l~~~~~~~~~~~~~~l~~~~--~~ 74 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPR----LGDSQSVMKKLQLLQAHLMHTQRRAEAPPDYFLEASR--PP 74 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCccc----cCCcchHHHHHHHHHHHHhhcCCcccCCHHHHHHHhc--cc
Confidence 89999999999999999999999999999876532 122345778899998876666667777776 776654 46
Q ss_pred cccccccccHHHHHHHHHHHHHHhhccCCCCccccccCCCccceeecceEEEEEEEecCCCCcccccccceeeeeeeccc
Q 005687 188 FFQRYQQEDAHEFLQCLLDRLESCCLDSKTKDESLSSQGDNIVQRVFGGCLISKLQCCNCGSCSDTYEPLIDLSLEIEDV 267 (683)
Q Consensus 188 ~f~~~~QQDA~Efl~~LLd~L~~e~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C~~Cg~~S~~~E~F~~LsL~I~~~ 267 (683)
.|..+.||||+||+..||+.|+ ++|.++|+|++.++++|..|+.++.+.|+|..|+|+|+
T Consensus 75 ~f~~~~QqDa~EFl~~lLd~l~------------------~~i~~~F~G~~~~~i~C~~C~~~s~~~e~f~~l~L~i~-- 134 (327)
T cd02664 75 WFTPGSQQDCSEYLRYLLDRLH------------------TLIEKMFGGKLSTTIRCLNCNSTSARTERFRDLDLSFP-- 134 (327)
T ss_pred ccCCCCcCCHHHHHHHHHHHHH------------------HHHHhhCcEEeEeEEEcCCCCCEecccccceeeecCCC--
Confidence 7889999999999999999997 36889999999999999999999999999999999997
Q ss_pred CChHHHHHhhhhhccccCCCCcccccccCccceeeeeeeeecCCceeEEEEeeeeecCc--eeeeecceeecCccccccc
Q 005687 268 GSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTDGS--YVVKIDKHVEFPLELDLKP 345 (683)
Q Consensus 268 ~sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K~~~I~~LP~vLiIhLkRF~~d~~--~~~Ki~~~V~FP~~LDLs~ 345 (683)
+|+++|+.|+..|.+++ +++|+|++|++.+.+.|+..|.++|+||+|||+||.++.. ...|+++.|.||..|||..
T Consensus 135 -sl~~~l~~~~~~E~l~g-~n~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~ldl~~ 212 (327)
T cd02664 135 -SVQDLLNYFLSPEKLTG-DNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSINEVLSLPV 212 (327)
T ss_pred -CHHHHHHHhcCeeEccC-CCceeCCccCCccceeEEEEcccCChhhEEEeeeeEEccccCcceecCceEecCCEEecCc
Confidence 89999999999999865 7889999999999999999999999999999999998864 4579999999999999998
Q ss_pred cccCC-----------------CCCCcceeEEEeEEEEeecCCCCCCcEEEEEEcCC---------------------Ce
Q 005687 346 YTSGG-----------------QNSDVELKYHLYAIVEHMGSSPTCGHYFSYIRSSP---------------------DT 387 (683)
Q Consensus 346 y~~~~-----------------~~~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr~~~---------------------~~ 387 (683)
|+... ........|+|+|||+|.|.++++|||+||||... ++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~Vi~H~G~~~~~GHY~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (327)
T cd02664 213 RVESKSSESPLEKKEEESGDDGELVTRQVHYRLYAVVVHSGYSSESGHYFTYARDQTDADSTGQECPEPKDAEENDESKN 292 (327)
T ss_pred cccccccccccccccccccccccccCCCceEEEEEEEEEccCCCCCcceEEEEecCCccccccccccccccccccCCCCC
Confidence 87421 01123579999999999998889999999999754 78
Q ss_pred EEEEeCCcceEeccccccC-------CCeEEEEEE
Q 005687 388 WHRLNDSRVTRVEEEFVLS-------QDAYILFYA 415 (683)
Q Consensus 388 Wy~fNDs~Vs~vs~eeV~s-------~~AYiLfY~ 415 (683)
||+|||+.|+++++++|.+ ..||||||+
T Consensus 293 W~~fnD~~V~~~~~~~v~~~~~~~~~~~aYlLfY~ 327 (327)
T cd02664 293 WYLFNDSRVTFSSFESVQNVTSRFPKDTPYILFYE 327 (327)
T ss_pred EEEEeCCceEECCHHHHHHhhCCCCCCCEEEEEeC
Confidence 9999999999999999985 799999995
No 7
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=9.1e-58 Score=490.83 Aligned_cols=276 Identities=30% Similarity=0.568 Sum_probs=235.4
Q ss_pred CCCccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCchhhHHHHHHHHHHHHHhcCCCcccchhHHhhhhhc
Q 005687 106 VGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSPRKLVDNLNYI 185 (683)
Q Consensus 106 ~p~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~ll~~L~~l~~~~~~ss~~~i~P~~fl~~L~~~ 185 (683)
.++||.|+||||||||+||+|+++|+|++++........ ....++.+..++..++......+.|..|+.++++.
T Consensus 23 ~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~------~~~~~q~~~~~l~~~~~~~~~~~~P~~~~~~l~~~ 96 (332)
T cd02671 23 PFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLIS------SVEQLQSSFLLNPEKYNDELANQAPRRLLNALREV 96 (332)
T ss_pred CCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhcccC------cHHHHHHHHHHHHHHHhhcccccCHHHHHHHHHHh
Confidence 358999999999999999999999999999876532111 01111111122222333444566799999999999
Q ss_pred cccccccccccHHHHHHHHHHHHHHhhccCCCCccccccCCCccceeecceEEEEEEEecCCCCcccccccceeeeeeec
Q 005687 186 SSFFQRYQQEDAHEFLQCLLDRLESCCLDSKTKDESLSSQGDNIVQRVFGGCLISKLQCCNCGSCSDTYEPLIDLSLEIE 265 (683)
Q Consensus 186 ~~~f~~~~QQDA~Efl~~LLd~L~~e~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C~~Cg~~S~~~E~F~~LsL~I~ 265 (683)
.+.|..+.||||+|||..|||.|+. +|.++|+|.+.++++|..|++.+.+.|+|++|+|+|+
T Consensus 97 ~~~f~~~~QQDA~EFl~~LLd~L~~------------------~i~~~F~g~~~~~~~C~~C~~~s~~~E~f~~lsL~i~ 158 (332)
T cd02671 97 NPMYEGYLQHDAQEVLQCILGNIQE------------------LVEKDFQGQLVLRTRCLECETFTERREDFQDISVPVQ 158 (332)
T ss_pred ccccCCccccCHHHHHHHHHHHHHH------------------HHHhhhceEEEEEEEeCCCCCeeceecccEEEEEEeC
Confidence 9999999999999999999999983 5788999999999999999999999999999999998
Q ss_pred cc-------------------CChHHHHHhhhhhccccCCCCcccccccCccceeeeeeeeecCCceeEEEEeeeeecC-
Q 005687 266 DV-------------------GSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTDG- 325 (683)
Q Consensus 266 ~~-------------------~sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K~~~I~~LP~vLiIhLkRF~~d~- 325 (683)
.. .+|+++|+.|+..|.+.+ +++|.|++|+..+.+.|+..|.++|+||+|||+||.+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~tL~~~L~~f~~~E~l~g-~n~y~C~~C~~~~~a~k~~~~~~~P~vL~i~LkRF~~~~~ 237 (332)
T cd02671 159 ESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVG-EDKYFCENCHHYTEAERSLLFDKLPEVITIHLKCFAANGS 237 (332)
T ss_pred CCcccccccccccccccccccCCHHHHHHHhCCcceecC-CCCeeCCCCCCceeEEEEEEEecCCCEEEEEeeeeccccc
Confidence 54 489999999999999964 788999999999999999999999999999999999764
Q ss_pred -----ceeeeecceeecCccccccccccCCCCCCcceeEEEeEEEEeecCCCCCCcEEEEEEcCCCeEEEEeCCcceEec
Q 005687 326 -----SYVVKIDKHVEFPLELDLKPYTSGGQNSDVELKYHLYAIVEHMGSSPTCGHYFSYIRSSPDTWHRLNDSRVTRVE 400 (683)
Q Consensus 326 -----~~~~Ki~~~V~FP~~LDLs~y~~~~~~~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr~~~~~Wy~fNDs~Vs~vs 400 (683)
+...|+++.|.||..|||.+|.... ....|+|+|||+|.|.++++|||+|||| ||+|||+.|++++
T Consensus 238 ~~~~~~~~~Ki~~~v~fp~~L~~~~~~~~~----~~~~Y~L~~VI~H~G~~~~~GHY~a~vr-----W~~fdD~~V~~~~ 308 (332)
T cd02671 238 EFDCYGGLSKVNTPLLTPLKLSLEEWSTKP----KNDVYRLFAVVMHSGATISSGHYTAYVR-----WLLFDDSEVKVTE 308 (332)
T ss_pred cccccCCceecCccccCccccccccccCCC----CCCeEEEEEEEEEcCCCCCCCeEEEEEE-----EEEEcCcceEEcc
Confidence 2467999999999999999886443 3579999999999998789999999999 9999999999999
Q ss_pred ccccc---------CCCeEEEEEE
Q 005687 401 EEFVL---------SQDAYILFYA 415 (683)
Q Consensus 401 ~eeV~---------s~~AYiLfY~ 415 (683)
++++. ..+||||||+
T Consensus 309 ~~~~~~~~~~~~~~~~~aYiLfY~ 332 (332)
T cd02671 309 EKDFLEALSPNTSSTSTPYLLFYK 332 (332)
T ss_pred HHHHHhhcCCCCCCCCceEEEEEC
Confidence 87775 2589999995
No 8
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.4e-57 Score=481.72 Aligned_cols=285 Identities=27% Similarity=0.406 Sum_probs=249.1
Q ss_pred ccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCchhhHHHHHHHHHHHHHhcCCCcccchhHHhhhhhcccc
Q 005687 109 GLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSPRKLVDNLNYISSF 188 (683)
Q Consensus 109 GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~ll~~L~~l~~~~~~ss~~~i~P~~fl~~L~~~~~~ 188 (683)
||.|+||||||||+||+|+++|+|++++++....... ......+++++|+.+|..+.. +...++|..|+..|+...+.
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~~-~~~~~~~~~~~l~~L~~~l~~-~~~~i~p~~~~~~l~~~~~~ 78 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRG-ANQSSDNLTNALRDLFDTMDK-KQEPVPPIEFLQLLRMAFPQ 78 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhccccccc-cccchhHHHHHHHHHHHHHHh-CCCcCCcHHHHHHHHHHCcC
Confidence 8999999999999999999999999999887654321 123456899999999986654 45589999999999988888
Q ss_pred c------cccccccHHHHHHHHHHHHHHhhccCCCCccccccCCCccceeecceEEEEEEEecCCC-Ccccccccceeee
Q 005687 189 F------QRYQQEDAHEFLQCLLDRLESCCLDSKTKDESLSSQGDNIVQRVFGGCLISKLQCCNCG-SCSDTYEPLIDLS 261 (683)
Q Consensus 189 f------~~~~QQDA~Efl~~LLd~L~~e~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C~~Cg-~~S~~~E~F~~Ls 261 (683)
| ..++||||+||+..||+.|++++... ....++|.++|+|++.+.++|..|+ ..+.+.|+|+.|+
T Consensus 79 f~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~~--------~~~~~~i~~~F~g~~~~~~~C~~C~~~~~~~~e~f~~Ls 150 (305)
T cd02657 79 FAEKQNQGGYAQQDAEECWSQLLSVLSQKLPGA--------GSKGSFIDQLFGIELETKMKCTESPDEEEVSTESEYKLQ 150 (305)
T ss_pred cccccCCCCccccCHHHHHHHHHHHHHHHhccc--------CCCCcHHHHhhceEEEEEEEcCCCCCCCccccccceEEE
Confidence 8 45699999999999999999986431 2345689999999999999999999 7999999999999
Q ss_pred eeeccc---CChHHHHHhhhhhccccCCCCcccccccCccceeeeeeeeecCCceeEEEEeeeeecCc--eeeeecceee
Q 005687 262 LEIEDV---GSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTDGS--YVVKIDKHVE 336 (683)
Q Consensus 262 L~I~~~---~sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K~~~I~~LP~vLiIhLkRF~~d~~--~~~Ki~~~V~ 336 (683)
|+|+.. .+|+++|+.+++++.. ..|+.|+....+.|+.+|.++|++|+|||+||.++.. ...|+...|.
T Consensus 151 l~i~~~~~~~~l~~~L~~~~~~~~~------~~~~~~~~~~~~~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~ 224 (305)
T cd02657 151 CHISITTEVNYLQDGLKKGLEEEIE------KHSPTLGRDAIYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVK 224 (305)
T ss_pred eecCCCcccccHHHHHHHhhhhhhh------hcCcccCCCceEEEEEEeccCCcEEEEEEECCccccccCceeecCcEEE
Confidence 999865 6899999999986543 4699999999999999999999999999999998753 4679999999
Q ss_pred cCccccccccccCCCCCCcceeEEEeEEEEeecCCCCCCcEEEEEEcCC-CeEEEEeCCcceEeccccccC-------CC
Q 005687 337 FPLELDLKPYTSGGQNSDVELKYHLYAIVEHMGSSPTCGHYFSYIRSSP-DTWHRLNDSRVTRVEEEFVLS-------QD 408 (683)
Q Consensus 337 FP~~LDLs~y~~~~~~~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr~~~-~~Wy~fNDs~Vs~vs~eeV~s-------~~ 408 (683)
||.+|||.+|+. .+..|+|+|||+|.|.++++|||+||+|... ++||+|||+.|+++++++|.. ..
T Consensus 225 fP~~Ldl~~~~~------~~~~Y~L~~vI~H~G~~~~~GHY~~~~~~~~~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~ 298 (305)
T cd02657 225 FPFELDLYELCT------PSGYYELVAVITHQGRSADSGHYVAWVRRKNDGKWIKFDDDKVSEVTEEDILKLSGGGDWHI 298 (305)
T ss_pred CCceEecccccC------CCCcEEEEEEEEecCCCCCCcEEEEEEEcCCCCeEEEEECCceEEeCHHHHHhhcCCCCCce
Confidence 999999999986 2458999999999998889999999999965 899999999999999999974 68
Q ss_pred eEEEEEE
Q 005687 409 AYILFYA 415 (683)
Q Consensus 409 AYiLfY~ 415 (683)
||||||+
T Consensus 299 aYiL~Y~ 305 (305)
T cd02657 299 AYILLYK 305 (305)
T ss_pred EEEEEEC
Confidence 9999996
No 9
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.4e-57 Score=476.95 Aligned_cols=249 Identities=41% Similarity=0.763 Sum_probs=225.9
Q ss_pred ccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCchhhHHHHHHHHHHHHHhcCCCcccchhHHhhhhhcccc
Q 005687 109 GLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSPRKLVDNLNYISSF 188 (683)
Q Consensus 109 GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~ll~~L~~l~~~~~~ss~~~i~P~~fl~~L~~~~~~ 188 (683)
||.|+||||||||+||+|+++|+|++++++ +|..|+..++...+.
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~-----------------------------------~P~~~~~~l~~~~~~ 45 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE-----------------------------------TPKELFSQVCRKAPQ 45 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH-----------------------------------CHHHHHHHHHHhhHh
Confidence 899999999999999999999999999875 566777777777788
Q ss_pred ccccccccHHHHHHHHHHHHHHhhccCCCCccccccCCCccceeecceEEEEEEEecCCCCcccccccceeeeeeecc--
Q 005687 189 FQRYQQEDAHEFLQCLLDRLESCCLDSKTKDESLSSQGDNIVQRVFGGCLISKLQCCNCGSCSDTYEPLIDLSLEIED-- 266 (683)
Q Consensus 189 f~~~~QQDA~Efl~~LLd~L~~e~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C~~Cg~~S~~~E~F~~LsL~I~~-- 266 (683)
|..++||||+|||..||+.|+ ++|.++|.|++.++++|..|++.+.+.|+|+.|+|+++.
T Consensus 46 f~~~~QqDA~Efl~~lld~l~------------------~~i~~~F~G~~~~~i~C~~C~~~s~~~E~f~~L~Lp~~~~~ 107 (279)
T cd02667 46 FKGYQQQDSHELLRYLLDGLR------------------TFIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDEI 107 (279)
T ss_pred hcCCchhhHHHHHHHHHHHHH------------------HhhhhhcceEEEEEEEcCCCCCEeCccccceEEecCCCccc
Confidence 999999999999999999998 368899999999999999999999999999999998753
Q ss_pred --cCChHHHHHhhhhhccccCCCCcccccccCccceeeeeeeeecCCceeEEEEeeeeecCc-eeeeecceeecCccccc
Q 005687 267 --VGSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTDGS-YVVKIDKHVEFPLELDL 343 (683)
Q Consensus 267 --~~sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K~~~I~~LP~vLiIhLkRF~~d~~-~~~Ki~~~V~FP~~LDL 343 (683)
..+|+++|+.|+..|.|++ +++|.|++|++ +.|+..|.++|++|+|||+||.++.. ...|++..|.||.+|||
T Consensus 108 ~~~~sL~~~L~~~~~~E~l~~-~~~~~C~~C~~---a~k~~~i~~~P~~Lii~LkRF~~~~~~~~~Ki~~~v~fP~~Ldl 183 (279)
T cd02667 108 KSECSIESCLKQFTEVEILEG-NNKFACENCTK---AKKQYLISKLPPVLVIHLKRFQQPRSANLRKVSRHVSFPEILDL 183 (279)
T ss_pred CCCCCHHHHHHhhcCeeEecC-CCcccCCccCc---eeeEeEhhhCCCeEEEEEeccccCcccCceecCceEeCCCccch
Confidence 4589999999999999974 78899999988 88999999999999999999999865 56899999999999999
Q ss_pred cccccCC---CCCCcceeEEEeEEEEeecCCCCCCcEEEEEEcC----------------------CCeEEEEeCCcceE
Q 005687 344 KPYTSGG---QNSDVELKYHLYAIVEHMGSSPTCGHYFSYIRSS----------------------PDTWHRLNDSRVTR 398 (683)
Q Consensus 344 s~y~~~~---~~~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr~~----------------------~~~Wy~fNDs~Vs~ 398 (683)
.+|+... ........|+|+|||+|.|.. ++|||+||||.. +++||+|||+.|++
T Consensus 184 ~~~~~~~~~~~~~~~~~~Y~L~~vi~H~G~~-~~GHY~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~dD~~V~~ 262 (279)
T cd02667 184 APFCDPKCNSSEDKSSVLYRLYGVVEHSGTM-RSGHYVAYVKVRPPQQRLSDLTKSKPAADEAGPGSGQWYYISDSDVRE 262 (279)
T ss_pred hhccCccccccccCCCceEEEEEEEEEeCCC-CCCEeEEEEEcCccccccccccccccccccCCCCCCcEEEEECCccEE
Confidence 9999762 223346799999999999975 999999999974 57999999999999
Q ss_pred eccccccCCCeEEEEEE
Q 005687 399 VEEEFVLSQDAYILFYA 415 (683)
Q Consensus 399 vs~eeV~s~~AYiLfY~ 415 (683)
++.++|.+.+||||||+
T Consensus 263 v~~~~v~~~~aYiLfYe 279 (279)
T cd02667 263 VSLEEVLKSEAYLLFYE 279 (279)
T ss_pred CCHHHhccCCcEEEEeC
Confidence 99999999999999995
No 10
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.4e-56 Score=477.46 Aligned_cols=279 Identities=26% Similarity=0.394 Sum_probs=243.0
Q ss_pred ccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCchhhHHHHHHHHHHHHHhc--------------CCCccc
Q 005687 109 GLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLAS--------------SGKVLS 174 (683)
Q Consensus 109 GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~ll~~L~~l~~~~~~s--------------s~~~i~ 174 (683)
||.|+||||||||+||||+++|+|+++|+.+.+...+.......+++++|..++..++.. ....+.
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~i~ 80 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVGIK 80 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccCCCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccccC
Confidence 899999999999999999999999999987433222222334568899999998766542 234689
Q ss_pred chhHHhhhhhccccccccccccHHHHHHHHHHHHHHhhccCCCCccccccCCCccceeecceEEEEEEEecCCCCccccc
Q 005687 175 PRKLVDNLNYISSFFQRYQQEDAHEFLQCLLDRLESCCLDSKTKDESLSSQGDNIVQRVFGGCLISKLQCCNCGSCSDTY 254 (683)
Q Consensus 175 P~~fl~~L~~~~~~f~~~~QQDA~Efl~~LLd~L~~e~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C~~Cg~~S~~~ 254 (683)
|..|+.+++...+.|..+.||||+||+.+||+.|++++... ....+.++|+|.+.++++|..|+.++.+.
T Consensus 81 p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~----------~~~~~~~~f~~~~~~~i~C~~C~~~s~~~ 150 (311)
T cd02658 81 PSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESFKN----------LGLNPNDLFKFMIEDRLECLSCKKVKYTS 150 (311)
T ss_pred cHHHHHHHhccChhhcccccccHHHHHHHHHHHHHHhhccc----------ccCCchhheEEEeeEEEEcCCCCCEEEee
Confidence 99999999999999999999999999999999999886421 12357899999999999999999999999
Q ss_pred ccceeeeeeeccc--------------CChHHHHHhhhhhccccCCCCcccccccCccceeeeeeeeecCCceeEEEEee
Q 005687 255 EPLIDLSLEIEDV--------------GSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKR 320 (683)
Q Consensus 255 E~F~~LsL~I~~~--------------~sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K~~~I~~LP~vLiIhLkR 320 (683)
|+|..|+|+++.. .+|+++|+.|+..|.++ +.|++|++++.+.|+.+|.+||+||+|||+|
T Consensus 151 e~~~~lsL~l~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~i~-----~~C~~C~~~~~a~k~~~i~~lP~vLii~LkR 225 (311)
T cd02658 151 ELSEILSLPVPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIE-----DFCSTCKEKTTATKTTGFKTFPDYLVINMKR 225 (311)
T ss_pred cceeEEeeecccccccccccccccCCCCCHHHHHHHHcCccccc-----ccccCCCCcccEEEEEEeecCCceEEEEeEE
Confidence 9999999998743 38999999999999886 6799999999999999999999999999999
Q ss_pred eeec-CceeeeecceeecCccccccccccCCCCCCcceeEEEeEEEEeecCCCCCCcEEEEEEcC---CCeEEEEeCCcc
Q 005687 321 FKTD-GSYVVKIDKHVEFPLELDLKPYTSGGQNSDVELKYHLYAIVEHMGSSPTCGHYFSYIRSS---PDTWHRLNDSRV 396 (683)
Q Consensus 321 F~~d-~~~~~Ki~~~V~FP~~LDLs~y~~~~~~~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr~~---~~~Wy~fNDs~V 396 (683)
|.++ .....|+...|.||.+| ....|+|+|||+|.|.++++|||+||+|.. +++||+|||+.|
T Consensus 226 F~~~~~~~~~Ki~~~v~~p~~l-------------~~~~Y~L~~vI~H~G~~~~~GHY~~~vk~~~~~~~~W~~fnD~~V 292 (311)
T cd02658 226 FQLLENWVPKKLDVPIDVPEEL-------------GPGKYELIAFISHKGTSVHSGHYVAHIKKEIDGEGKWVLFNDEKV 292 (311)
T ss_pred EEecCCCceEeeccccccCCcC-------------CCCcEEEEEEEEccCCCCCCcceEEEEeCCCCCCCCEEEecCcee
Confidence 9995 44567999999999877 235799999999999889999999999985 389999999999
Q ss_pred eEeccccccCCCeEEEEEE
Q 005687 397 TRVEEEFVLSQDAYILFYA 415 (683)
Q Consensus 397 s~vs~eeV~s~~AYiLfY~ 415 (683)
++++..+|.+.+||||||+
T Consensus 293 ~~~~~~~~~~~~~YilfY~ 311 (311)
T cd02658 293 VASQDPPEMKKLGYIYFYQ 311 (311)
T ss_pred EECCcccccCCcceEEEEC
Confidence 9999999999999999996
No 11
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.1e-55 Score=474.72 Aligned_cols=298 Identities=30% Similarity=0.539 Sum_probs=252.7
Q ss_pred CCccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCchhhHHHHHHHHHHHHHhcCCCcccchhHHhhhhhcc
Q 005687 107 GAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSPRKLVDNLNYIS 186 (683)
Q Consensus 107 p~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~ll~~L~~l~~~~~~ss~~~i~P~~fl~~L~~~~ 186 (683)
++||.|+||||||||+||+|+++|+|++++++..... ......+++++|+.+|..+.......+.|..+........
T Consensus 2 ~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~~---~~~~~~~~~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~~~ 78 (334)
T cd02659 2 YVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTE---DDDDNKSVPLALQRLFLFLQLSESPVKTTELTDKTRSFGW 78 (334)
T ss_pred CCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCcc---cCcccccHHHHHHHHHHHHHhCCccccCcchhheeccCCC
Confidence 4899999999999999999999999999999863211 1223457889999999877665555666665542222223
Q ss_pred ccccccccccHHHHHHHHHHHHHHhhccCCCCccccccCCCccceeecceEEEEEEEecCCCCcccccccceeeeeeecc
Q 005687 187 SFFQRYQQEDAHEFLQCLLDRLESCCLDSKTKDESLSSQGDNIVQRVFGGCLISKLQCCNCGSCSDTYEPLIDLSLEIED 266 (683)
Q Consensus 187 ~~f~~~~QQDA~Efl~~LLd~L~~e~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C~~Cg~~S~~~E~F~~LsL~I~~ 266 (683)
..|..+.||||+|||..||+.|++++.. ....++|.++|+|.+...++|..|+..+...++|+.|+|++++
T Consensus 79 ~~~~~~~QqDa~Efl~~ll~~l~~~~~~---------~~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~ 149 (334)
T cd02659 79 DSLNTFEQHDVQEFFRVLFDKLEEKLKG---------TGQEGLIKNLFGGKLVNYIICKECPHESEREEYFLDLQVAVKG 149 (334)
T ss_pred CCCCcccchhHHHHHHHHHHHHHHHhcc---------CcccchhhhhCceEEEeEEEecCCCceecccccceEEEEEcCC
Confidence 4578899999999999999999988653 1234689999999999999999999999999999999999999
Q ss_pred cCChHHHHHhhhhhccccCCCCcccccccCccceeeeeeeeecCCceeEEEEeeeeecC--ceeeeecceeecCcccccc
Q 005687 267 VGSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTDG--SYVVKIDKHVEFPLELDLK 344 (683)
Q Consensus 267 ~~sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K~~~I~~LP~vLiIhLkRF~~d~--~~~~Ki~~~V~FP~~LDLs 344 (683)
..+|+++|+.|+..|.+++ ++.|.|++|++++.+.++..|.++|++|+|||+||.++. ....|+...|.||..|||.
T Consensus 150 ~~~l~~~l~~~~~~e~l~~-~~~~~C~~C~~~~~~~k~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl~ 228 (334)
T cd02659 150 KKNLEESLDAYVQGETLEG-DNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFPLELDME 228 (334)
T ss_pred CCCHHHHHHHhcCeeEecC-CccEecCcCCCcccEEEEEEeecCCCEEEEEeeeeEEccccCcceeCCceEeCCceecCc
Confidence 8999999999999998864 778999999999999999999999999999999999864 3467999999999999999
Q ss_pred ccccCCC---------CCCcceeEEEeEEEEeecCCCCCCcEEEEEEcC-CCeEEEEeCCcceEecccccc---------
Q 005687 345 PYTSGGQ---------NSDVELKYHLYAIVEHMGSSPTCGHYFSYIRSS-PDTWHRLNDSRVTRVEEEFVL--------- 405 (683)
Q Consensus 345 ~y~~~~~---------~~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr~~-~~~Wy~fNDs~Vs~vs~eeV~--------- 405 (683)
+|+.... .......|+|+|||+|.|. .++|||+||||.. +++||+|||+.|+++++++|+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~Y~L~~vI~H~G~-~~~GHY~~~vk~~~~~~W~~~nD~~V~~i~~~~v~~~~~g~~~~ 307 (334)
T cd02659 229 PYTEKGLAKKEGDSEKKDSESYIYELHGVLVHSGD-AHGGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAEEECFGGEET 307 (334)
T ss_pred cccccccccccccccccCCCCeeEEEEEEEEecCC-CCCCCeEEEEECCCCCceEEEeCcccEECCHHHHHHHcCCCccc
Confidence 9987643 2344679999999999995 8999999999985 789999999999999999885
Q ss_pred -------------CCCeEEEEEEEcC
Q 005687 406 -------------SQDAYILFYAKQG 418 (683)
Q Consensus 406 -------------s~~AYiLfY~R~~ 418 (683)
+..||||||+|++
T Consensus 308 ~~~~~~~~~~~~~~~~ay~l~Y~~~~ 333 (334)
T cd02659 308 QKTYDSGPRAFKRTTNAYMLFYERKS 333 (334)
T ss_pred cccccccccccccccceEEEEEEEeC
Confidence 2469999999965
No 12
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1e-54 Score=484.16 Aligned_cols=361 Identities=20% Similarity=0.301 Sum_probs=272.5
Q ss_pred hhhhccCCCCCCcccccCC------CCCCCCCchhHHHhhhcCCCCcc--CCCCCCCCCCCCCCCccCCCCcccCCCCCC
Q 005687 36 TLHDHLHPSNHPLTLTDLD------KDQNNDDDDDYEEIYRDTRPISS--SYGRYNWGSSLLSRPVEKHWPIQIKPTGVG 107 (683)
Q Consensus 36 ~~k~~l~~~~~~~slt~v~------~~~~~~dd~d~~~i~~~~k~~~~--~~g~~~~~~~~l~~p~~~~~~~e~~p~~~p 107 (683)
++..|....+|.+.+.-.. .++....|.+++.|.....|.-+ .+........ +.+.... . .-....
T Consensus 46 ha~~H~~~~~H~~~v~l~t~~~yc~~~~~~v~d~~l~~i~~~~~~~~~~~~i~~~~~~~~-~~~~~~~-~----~~~~G~ 119 (440)
T cd02669 46 HAYTHSLEDNHHVFLNLETLKFYCLPDNYEIIDSSLDDIKYVLNPTYTKEQISDLDRDPK-LSRDLDG-K----PYLPGF 119 (440)
T ss_pred HHHHHhhccCCCEEEECCCCCEEEeCCCCEEeCccHHHHHHHhcCCCCHHHHHHhhhccc-cccccCC-C----CccCCc
Confidence 4445555567777664333 46666778888887544443211 0000000000 0000000 0 012345
Q ss_pred CccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCchhhHHHHHHHHHHHHHhcC--CCcccchhHHhhhhhc
Q 005687 108 AGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASS--GKVLSPRKLVDNLNYI 185 (683)
Q Consensus 108 ~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~ll~~L~~l~~~~~~ss--~~~i~P~~fl~~L~~~ 185 (683)
+||.|+|||||||||||+|+++|+||++++...+.... .....+++++|..++..++... ...++|..|+.+++..
T Consensus 120 vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~--~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~fl~~l~~~ 197 (440)
T cd02669 120 VGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENI--KDRKSELVKRLSELIRKIWNPRNFKGHVSPHELLQAVSKV 197 (440)
T ss_pred cCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccccc--cCCCcHHHHHHHHHHHHHhccccCCCccCHHHHHHHHHhh
Confidence 89999999999999999999999999999976543211 1223478889999998777654 4689999999999876
Q ss_pred c-ccccccccccHHHHHHHHHHHHHHhhccCCCCccccccCCCccceeecceEEEEEEEecCCC---------------C
Q 005687 186 S-SFFQRYQQEDAHEFLQCLLDRLESCCLDSKTKDESLSSQGDNIVQRVFGGCLISKLQCCNCG---------------S 249 (683)
Q Consensus 186 ~-~~f~~~~QQDA~Efl~~LLd~L~~e~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C~~Cg---------------~ 249 (683)
. +.|.+++||||+|||.+|||.||+++... .....++|+++|+|++.++++|..|. .
T Consensus 198 ~~~~f~~~~QqDA~EFl~~LLd~L~~~l~~~-------~~~~~~ii~~~F~G~l~~~~~c~~~~~~~~~~~~~~~~c~~~ 270 (440)
T cd02669 198 SKKKFSITEQSDPVEFLSWLLNTLHKDLGGS-------KKPNSSIIHDCFQGKVQIETQKIKPHAEEEGSKDKFFKDSRV 270 (440)
T ss_pred cccccCCcccCCHHHHHHHHHHHHHHHhccC-------CCCCCCcceeccCceEEEEEEeeccccccccccccccccccc
Confidence 4 56899999999999999999999987542 12457899999999999999987554 2
Q ss_pred cccccccceeeeeeecccCCh-----HHHHHhhhhhccccCCCCcccccccCccceeeeeeeeecCCceeEEEEeeeeec
Q 005687 250 CSDTYEPLIDLSLEIEDVGSL-----GSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTD 324 (683)
Q Consensus 250 ~S~~~E~F~~LsL~I~~~~sL-----~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K~~~I~~LP~vLiIhLkRF~~d 324 (683)
.+.+.++|++|+|+|+....+ ..+|..+...|.++ +|.|+.|.....+.|+.+|++||+||+||||||.++
T Consensus 271 ~s~~~~pF~~LsLdip~~~~~~~~~~~~~l~~~~l~e~L~----ky~~~~c~~~~~a~k~~~I~~LP~vLiihLKRF~~~ 346 (440)
T cd02669 271 KKTSVSPFLLLTLDLPPPPLFKDGNEENIIPQVPLKQLLK----KYDGKTETELKDSLKRYLISRLPKYLIFHIKRFSKN 346 (440)
T ss_pred ceeeeccceEEEecCCCCccccccccccccCcccHHHHHH----hcCCccceecccceEEEEEeeCCcEEEEEEecccCC
Confidence 456689999999999865322 22333344445554 388999999999999999999999999999999998
Q ss_pred CceeeeecceeecCcc-ccccccccCCC-CCCcceeEEEeEEEEeecCCCCCCcEEEEEEcC-CCeEEEEeCCcceEecc
Q 005687 325 GSYVVKIDKHVEFPLE-LDLKPYTSGGQ-NSDVELKYHLYAIVEHMGSSPTCGHYFSYIRSS-PDTWHRLNDSRVTRVEE 401 (683)
Q Consensus 325 ~~~~~Ki~~~V~FP~~-LDLs~y~~~~~-~~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr~~-~~~Wy~fNDs~Vs~vs~ 401 (683)
.....|+.+.|.||.. |||.+|+.... .......|+|+|||+|.|..+++|||+||||.. +|+||+|||+.|+++++
T Consensus 347 ~~~~~K~~t~V~FP~~~LDm~~y~~~~~~~~~~~~~Y~L~avI~H~G~~~~sGHY~a~v~~~~~~~W~~fdD~~V~~v~~ 426 (440)
T cd02669 347 NFFKEKNPTIVNFPIKNLDLSDYVHFDKPSLNLSTKYNLVANIVHEGTPQEDGTWRVQLRHKSTNKWFEIQDLNVKEVLP 426 (440)
T ss_pred CCccccCCCEEECCCCccchhhhhCccccccCCCceEEEEEEEEEeccCCCCeeEEEEEEcCCCCeEEEEECCeeeEcCH
Confidence 7677899999999996 89999996432 123468999999999999855999999999974 78999999999999999
Q ss_pred ccccCCCeEEEEEE
Q 005687 402 EFVLSQDAYILFYA 415 (683)
Q Consensus 402 eeV~s~~AYiLfY~ 415 (683)
++|...+||||||+
T Consensus 427 ~~v~~~eaYll~Y~ 440 (440)
T cd02669 427 QLIFLSESYIQIWE 440 (440)
T ss_pred HHhccCCceEEEeC
Confidence 99999999999995
No 13
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-54 Score=471.13 Aligned_cols=308 Identities=33% Similarity=0.533 Sum_probs=264.9
Q ss_pred CCCccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCCCCC---CCchhhHHHHHHHHHHHHHhcCCCcccchhHHhhh
Q 005687 106 VGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDG---ATEGFCVICALRDHIELSLASSGKVLSPRKLVDNL 182 (683)
Q Consensus 106 ~p~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~---~~~~~~ll~~L~~l~~~~~~ss~~~i~P~~fl~~L 182 (683)
..+||.|+||||||||+||||.|+++|++|+++-......+. ..-...+..++.+|+.+.......+++|..|...+
T Consensus 264 GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~~haf~Ps~fK~tI 343 (823)
T COG5560 264 GTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKKTI 343 (823)
T ss_pred cccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCccccccChHHHHHHH
Confidence 348999999999999999999999999999987544332221 12223466688888887777777899999999999
Q ss_pred hhccccccccccccHHHHHHHHHHHHHHhhccCCCCcc-----------------------ccccCCCccceeecceEEE
Q 005687 183 NYISSFFQRYQQEDAHEFLQCLLDRLESCCLDSKTKDE-----------------------SLSSQGDNIVQRVFGGCLI 239 (683)
Q Consensus 183 ~~~~~~f~~~~QQDA~Efl~~LLd~L~~e~~~~~~~~~-----------------------~~~~~~~s~I~~lF~G~l~ 239 (683)
+.++..|.||.|||++||+.+|||.||+.+.....+.. ....++.++|.++|.|.++
T Consensus 344 G~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiItdLFqgmyK 423 (823)
T COG5560 344 GSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQGMYK 423 (823)
T ss_pred hhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Confidence 99999999999999999999999999998763211110 0123688999999999999
Q ss_pred EEEEecCCCCcccccccceeeeeee-------------------------------------------------------
Q 005687 240 SKLQCCNCGSCSDTYEPLIDLSLEI------------------------------------------------------- 264 (683)
Q Consensus 240 s~i~C~~Cg~~S~~~E~F~~LsL~I------------------------------------------------------- 264 (683)
+++.|+.|+.++.+++||++|+||+
T Consensus 424 STL~Cp~C~~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~pl~iel~~sSt~~~lk~lv~~~~gk~gc~ei~v~~ 503 (823)
T COG5560 424 STLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKIELDASSTIRGLKKLVDAEYGKLGCFEIKVMC 503 (823)
T ss_pred ceeeccCcCceeeeecchhhccccCchhhcccccEEEECCCCCCCceEEEEeccchHHHHHHHHHHHhccCCccceeEEE
Confidence 9999999999999999999999988
Q ss_pred --------------------------------------------------------------------------------
Q 005687 265 -------------------------------------------------------------------------------- 264 (683)
Q Consensus 265 -------------------------------------------------------------------------------- 264 (683)
T Consensus 504 iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe~~~ngi~vpvvh~~~~~gYks~rlFg~pflqlnv~~~~~i~~kLvkE~~ 583 (823)
T COG5560 504 IYYGGNYNMLEPADKVLLQDIPQTDFVYLYETNDNGIEVPVVHLRIEKGYKSKRLFGDPFLQLNVLIKASIYDKLVKEFE 583 (823)
T ss_pred EEeccchhhcchhhHHHHhhcCccceEEEeecCCCCeEEEEEeccccccccchhhhCCcceEEEeecchhhHHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 005687 265 -------------------------------------------------------------------------------- 264 (683)
Q Consensus 265 -------------------------------------------------------------------------------- 264 (683)
T Consensus 584 ell~~v~~k~tdvd~~~~q~~l~r~es~p~~wl~l~teid~kree~veeE~~~n~nd~vvi~cew~ek~y~~lFsy~~lw 663 (823)
T COG5560 584 ELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLKLETEIDTKREEQVEEEGQMNFNDAVVISCEWEEKRYLSLFSYDPLW 663 (823)
T ss_pred HHHHHHhhcchhhhhhhhhccchhcccCcchhhhhhhhccchhhhhhhhhhccCCCcceEEeeeccccchhhhhcCCccc
Confidence
Q ss_pred --------cccCChHHHHHhhhhhccccCCCCcccccccCccceeeeeeeeecCCceeEEEEeeeeecCceeeeecceee
Q 005687 265 --------EDVGSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTDGSYVVKIDKHVE 336 (683)
Q Consensus 265 --------~~~~sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K~~~I~~LP~vLiIhLkRF~~d~~~~~Ki~~~V~ 336 (683)
....+|++||..|.++|.+. ..+.|+|+.|+..+.|+|++.||++|.||+||||||+.......||.+-|+
T Consensus 664 ~~~ei~~~~rtiTL~dCl~eFskpEqLg-l~DswyCpgCkefrqasKqmelwrlP~iLiihLkRFss~rsfrdKiddlVe 742 (823)
T COG5560 664 TIREIGAAERTITLQDCLNEFSKPEQLG-LSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVE 742 (823)
T ss_pred hhHHhhhccCCCcHHHHHHHhccHhhcC-CcccccCCchHhhhhhhhhhhhhcCChheeeehhhhhhcccchhhhhhhhc
Confidence 01237899999999999884 567899999999999999999999999999999999998888899999999
Q ss_pred cCc-cccccccccCCCCCCcceeEEEeEEEEeecCCCCCCcEEEEEEcC-CCeEEEEeCCcceEeccccccCCCeEEEEE
Q 005687 337 FPL-ELDLKPYTSGGQNSDVELKYHLYAIVEHMGSSPTCGHYFSYIRSS-PDTWHRLNDSRVTRVEEEFVLSQDAYILFY 414 (683)
Q Consensus 337 FP~-~LDLs~y~~~~~~~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr~~-~~~Wy~fNDs~Vs~vs~eeV~s~~AYiLfY 414 (683)
||. .|||+.+...-.+ ....|+|+||=+|+|. .++|||+||+|+. +++||+|||++|++|.+++.....||+|||
T Consensus 743 yPiddldLs~~~~~~~~--p~liydlyavDNHygg-lsgGHYtAyarn~~n~~wy~fdDsritevdped~vtssaYvLFy 819 (823)
T COG5560 743 YPIDDLDLSGVEYMVDD--PRLIYDLYAVDNHYGG-LSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTSSAYVLFY 819 (823)
T ss_pred cccccccccceEEeecC--cceEEEeeeccccccc-cCCcceeeeeecccCCceEEecCccccccCccccccceeEEEEE
Confidence 999 6999988755422 3389999999999995 8999999999996 669999999999999999999999999999
Q ss_pred EEc
Q 005687 415 AKQ 417 (683)
Q Consensus 415 ~R~ 417 (683)
+|+
T Consensus 820 rrk 822 (823)
T COG5560 820 RRK 822 (823)
T ss_pred Eec
Confidence 996
No 14
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.3e-50 Score=416.98 Aligned_cols=211 Identities=39% Similarity=0.717 Sum_probs=192.9
Q ss_pred ccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCchhhHHHHHHHHHHHHHhcCCCcccchhHHhhhhhcccc
Q 005687 109 GLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSPRKLVDNLNYISSF 188 (683)
Q Consensus 109 GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~ll~~L~~l~~~~~~ss~~~i~P~~fl~~L~~~~~~ 188 (683)
||.|+||||||||+||+|+++|+|++++....
T Consensus 1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~------------------------------------------------ 32 (240)
T cd02662 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL------------------------------------------------ 32 (240)
T ss_pred CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH------------------------------------------------
Confidence 89999999999999999999999999886421
Q ss_pred ccccccccHHHHHHHHHHHHHHhhccCCCCccccccCCCccceeecceEEEEEEEecCCCCcccc-cccceeeeeeeccc
Q 005687 189 FQRYQQEDAHEFLQCLLDRLESCCLDSKTKDESLSSQGDNIVQRVFGGCLISKLQCCNCGSCSDT-YEPLIDLSLEIEDV 267 (683)
Q Consensus 189 f~~~~QQDA~Efl~~LLd~L~~e~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C~~Cg~~S~~-~E~F~~LsL~I~~~ 267 (683)
+||||+|||..||+.|+. .+.++|.|.+.+.++|..|++.+.. .|+|+.|+|+|+..
T Consensus 33 ----~QqDa~EFl~~ll~~l~~------------------~i~~~F~g~~~~~i~C~~C~~~s~~~~e~f~~LsL~ip~~ 90 (240)
T cd02662 33 ----EQQDAHELFQVLLETLEQ------------------LLKFPFDGLLASRIVCLQCGESSKVRYESFTMLSLPVPNQ 90 (240)
T ss_pred ----hhcCHHHHHHHHHHHHHH------------------hccCccccEEEEEEEeCCCCCccCcceeeeeeeEeccccc
Confidence 899999999999999982 4678999999999999999998764 99999999999865
Q ss_pred -----CChHHHHHhhhhhccccCCCCcccccccCccceeeeeeeeecCCceeEEEEeeeeecC-ceeeeecceeecCccc
Q 005687 268 -----GSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTDG-SYVVKIDKHVEFPLEL 341 (683)
Q Consensus 268 -----~sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K~~~I~~LP~vLiIhLkRF~~d~-~~~~Ki~~~V~FP~~L 341 (683)
.+|+++|+.|+..|.+++ |.|++| +..|.++|+||+|||+||.++. +...|++..|.||.+|
T Consensus 91 ~~~~~~sl~~~L~~~~~~E~l~~----~~C~~C--------~~~i~~lP~vLii~LkRF~~~~~~~~~K~~~~v~fp~~l 158 (240)
T cd02662 91 SSGSGTTLEHCLDDFLSTEIIDD----YKCDRC--------QTVIVRLPQILCIHLSRSVFDGRGTSTKNSCKVSFPERL 158 (240)
T ss_pred CCCCCCCHHHHHHHhcCcccccC----cCCCCC--------eEEeecCCcEEEEEEEEEEEcCCCceeeeccEEECCCcc
Confidence 599999999999999976 999999 5679999999999999999987 6678999999999988
Q ss_pred cccccccCCCCCCcceeEEEeEEEEeecCCCCCCcEEEEEEcC---------------------CCeEEEEeCCcceEec
Q 005687 342 DLKPYTSGGQNSDVELKYHLYAIVEHMGSSPTCGHYFSYIRSS---------------------PDTWHRLNDSRVTRVE 400 (683)
Q Consensus 342 DLs~y~~~~~~~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr~~---------------------~~~Wy~fNDs~Vs~vs 400 (683)
....|+|+|||+|.|. .++|||+||+|.. .++||+|||+.|++++
T Consensus 159 -------------~~~~Y~L~avi~H~G~-~~~GHY~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~ 224 (240)
T cd02662 159 -------------PKVLYRLRAVVVHYGS-HSSGHYVCYRRKPLFSKDKEPGSFVRMREGPSSTSHPWWRISDTTVKEVS 224 (240)
T ss_pred -------------CCceEEEEEEEEEecc-CCCceEEEEEeCCCcccccccccccccccccCccCCCEEEEechheEEeC
Confidence 2468999999999997 4999999999985 3899999999999999
Q ss_pred cccc-cCCCeEEEEEE
Q 005687 401 EEFV-LSQDAYILFYA 415 (683)
Q Consensus 401 ~eeV-~s~~AYiLfY~ 415 (683)
+++| .+.+||||||+
T Consensus 225 ~~~v~~~~~aY~LfYe 240 (240)
T cd02662 225 ESEVLEQKSAYMLFYE 240 (240)
T ss_pred HHHHhhCCCEEEEEeC
Confidence 9999 88999999995
No 15
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-50 Score=404.32 Aligned_cols=307 Identities=28% Similarity=0.417 Sum_probs=237.8
Q ss_pred CCCCccccCCCccchHHHHHHHhCCHHHHHHHHh------CCCCCCCCCCCchhhHHHHHHHHHHHHHhcCCCcccchhH
Q 005687 105 GVGAGLENLGNTCFINAILQCFTHTLPLVQALRS------FDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSPRKL 178 (683)
Q Consensus 105 ~~p~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~------~~~~~~~~~~~~~~~ll~~L~~l~~~~~~ss~~~i~P~~f 178 (683)
-.|.||.|+|||||||++||||+.+..|...|+. .+...+- ...+..+...+..+...+.....+.|+|..|
T Consensus 69 ~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~pr--g~~g~~~~k~F~~l~~~~~~Hg~~sis~~nF 146 (415)
T COG5533 69 LPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPR--GKPGSNAFKQFIALYETPGCHGPKSISPRNF 146 (415)
T ss_pred cCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCC--CCcchhHHHHHHHHHhccccCCCcccchHHH
Confidence 3468999999999999999999999999884433 2222222 2233334445555555566677789999999
Q ss_pred HhhhhhccccccccccccHHHHHHHHHHHHHHhhccCCCCc-------ccc-------------------ccCCCcccee
Q 005687 179 VDNLNYISSFFQRYQQEDAHEFLQCLLDRLESCCLDSKTKD-------ESL-------------------SSQGDNIVQR 232 (683)
Q Consensus 179 l~~L~~~~~~f~~~~QQDA~Efl~~LLd~L~~e~~~~~~~~-------~~~-------------------~~~~~s~I~~ 232 (683)
++.+...++.|++.+|||+|||+.++||.||+.+...+... +.. -..+.++|.+
T Consensus 147 ~~i~~~~n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L~sn~S~v~~ 226 (415)
T COG5533 147 IDILSGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLRSNKSLVAK 226 (415)
T ss_pred HHHHccccccccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhhccchHHHHH
Confidence 99999999999999999999999999999999875532221 000 0135688999
Q ss_pred ecceEEEEEEEecCCCCcccccccceeeeeeecccC--ChHHHHHhhhhhccccCCCCcccccccCccceeeeeeeeecC
Q 005687 233 VFGGCLISKLQCCNCGSCSDTYEPLIDLSLEIEDVG--SLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKV 310 (683)
Q Consensus 233 lF~G~l~s~i~C~~Cg~~S~~~E~F~~LsL~I~~~~--sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K~~~I~~L 310 (683)
.|.|++.++++|..|++.|.++.+|..|.++++... .|++||..|.+.|.+++ .+.|+|++|+++..+.|++.|.+|
T Consensus 227 ~f~gq~~srlqC~~C~~TStT~a~fs~l~vp~~~v~~~~l~eC~~~f~~~e~L~g-~d~W~CpkC~~k~ss~K~~~I~~l 305 (415)
T COG5533 227 TFFGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEVVQLGLQECIDRFYEEEKLEG-KDAWRCPKCGRKESSRKRMEILVL 305 (415)
T ss_pred HHhhhhhhhhhhhhcCCceeEEeccceeeeccchheeecHHHHHHHhhhHHhhcC-cccccCchhcccccchheEEEEec
Confidence 999999999999999999999999999999998654 58999999999999975 788999999999999999999999
Q ss_pred CceeEEEEeeeeecCceeeeeccee----ecCccccccccccCCCCCCcceeEEEeEEEEeecCCCCCCcEEEEEEcCCC
Q 005687 311 PSVAAFHLKRFKTDGSYVVKIDKHV----EFPLELDLKPYTSGGQNSDVELKYHLYAIVEHMGSSPTCGHYFSYIRSSPD 386 (683)
Q Consensus 311 P~vLiIhLkRF~~d~~~~~Ki~~~V----~FP~~LDLs~y~~~~~~~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr~~~~ 386 (683)
|++||||++||.-.-....||.... +||.+..+.+-.... ..-.+..|.|+|||||.|. .++|||+++|+. ++
T Consensus 306 P~~LII~i~RF~i~V~~~~kiD~p~gw~~~~~~e~~v~~~f~~~-~~~~P~~Y~L~gv~Ch~G~-L~gGHY~s~v~~-~~ 382 (415)
T COG5533 306 PDVLIIHISRFHISVMGRKKIDTPQGWKNTASVEVNVTLLFNNG-IGYIPRKYSLLGVVCHNGT-LNGGHYFSEVKR-SG 382 (415)
T ss_pred CceEEEEeeeeeEEeecccccCCCcchhccCCceecccccccCC-CCCCccceeEEEEEeecce-ecCceeEEeeee-cC
Confidence 9999999999984433333433321 122222211111111 1123578999999999995 999999999998 58
Q ss_pred eEEEEeCCcceEeccccc-cCCCeEEEEEEEc
Q 005687 387 TWHRLNDSRVTRVEEEFV-LSQDAYILFYAKQ 417 (683)
Q Consensus 387 ~Wy~fNDs~Vs~vs~eeV-~s~~AYiLfY~R~ 417 (683)
.|+.|||+.|+.++...- ...++|||||.|.
T Consensus 383 ~W~~~dDs~vr~~~~~t~~~~pSsYilFY~r~ 414 (415)
T COG5533 383 TWNVYDDSQVRKGSRTTSGSHPSSYILFYTRS 414 (415)
T ss_pred ceEEechhheeeccceecccCCcceEEEEEec
Confidence 899999999999976443 3468999999985
No 16
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=9.9e-48 Score=390.93 Aligned_cols=222 Identities=44% Similarity=0.798 Sum_probs=204.2
Q ss_pred ccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCchhhHHHHHHHHHHHHHhcCCCcccchhHHhhhhhcccc
Q 005687 109 GLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSPRKLVDNLNYISSF 188 (683)
Q Consensus 109 GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~ll~~L~~l~~~~~~ss~~~i~P~~fl~~L~~~~~~ 188 (683)
||.|.||||||||+||+|++
T Consensus 1 gl~n~~~~cy~n~~~Q~l~~------------------------------------------------------------ 20 (230)
T cd02674 1 GLRNLGNTCYMNSILQCLSA------------------------------------------------------------ 20 (230)
T ss_pred CccccCcchhhhHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999998
Q ss_pred ccccccccHHHHHHHHHHHHHHhhccCCCCccccccCCCccceeecceEEEEEEEecCCCCcccccccceeeeeeecccC
Q 005687 189 FQRYQQEDAHEFLQCLLDRLESCCLDSKTKDESLSSQGDNIVQRVFGGCLISKLQCCNCGSCSDTYEPLIDLSLEIEDVG 268 (683)
Q Consensus 189 f~~~~QQDA~Efl~~LLd~L~~e~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C~~Cg~~S~~~E~F~~LsL~I~~~~ 268 (683)
.||||+||+.+||+.|+ +.|.++|+|.+..+++|..|++.+.+.|+|+.|+|+++...
T Consensus 21 ----~QqDa~Ef~~~ll~~l~------------------~~i~~~F~~~~~~~~~C~~C~~~~~~~e~~~~l~l~ip~~~ 78 (230)
T cd02674 21 ----DQQDAQEFLLFLLDGLH------------------SIIVDLFQGQLKSRLTCLTCGKTSTTFEPFTYLSLPIPSGS 78 (230)
T ss_pred ----hhhhHHHHHHHHHHHHh------------------hhHHheeCCEEeCcEEcCCCcCCcceecceeEEEEeccccc
Confidence 89999999999999997 36889999999999999999999999999999999998644
Q ss_pred ------ChHHHHHhhhhhccccCCCCcccccccCccceeeeeeeeecCCceeEEEEeeeeecCceeeeecceeecCc-cc
Q 005687 269 ------SLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTDGSYVVKIDKHVEFPL-EL 341 (683)
Q Consensus 269 ------sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K~~~I~~LP~vLiIhLkRF~~d~~~~~Ki~~~V~FP~-~L 341 (683)
+|+++|+.|+..+.+++ .++|.|++|++.+.+.++..|.++|++|+|||+||.++.....|+...|.||. .|
T Consensus 79 ~~~~~~sl~~~L~~~~~~e~~~~-~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~~~~~~K~~~~v~~~~~~l 157 (230)
T cd02674 79 GDAPKVTLEDCLRLFTKEETLDG-DNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDL 157 (230)
T ss_pred CCCCCCCHHHHHHHhcCccccCC-CCceeCCCCCCccceEEEEEEecCChhhEeEhhheecCCCCcccCCceEecccccc
Confidence 99999999999998865 67899999999999999999999999999999999998877889999999996 59
Q ss_pred cccccccCCCCCCcceeEEEeEEEEeecCCCCCCcEEEEEEcCC-CeEEEEeCCcceEeccccccCCCeEEEEEE
Q 005687 342 DLKPYTSGGQNSDVELKYHLYAIVEHMGSSPTCGHYFSYIRSSP-DTWHRLNDSRVTRVEEEFVLSQDAYILFYA 415 (683)
Q Consensus 342 DLs~y~~~~~~~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr~~~-~~Wy~fNDs~Vs~vs~eeV~s~~AYiLfY~ 415 (683)
|+.+|+... ......+|+|+|||+|.|.. ++|||+||+|... ++||+|||+.|++++++++...+||||||+
T Consensus 158 ~l~~~~~~~-~~~~~~~Y~L~~vI~H~G~~-~~GHY~~~~~~~~~~~W~~fnD~~V~~i~~~~~~~~~~YlL~Y~ 230 (230)
T cd02674 158 DLTPYVDTR-SFTGPFKYDLYAVVNHYGSL-NGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE 230 (230)
T ss_pred ccccccCcc-cCCCCceEEEEEEEEeeCCC-CCcEEEEEEECCCCCceEEEcCCeEEEcCHHHccCCCceEEEeC
Confidence 999986332 33456799999999999985 9999999999964 899999999999999999988999999996
No 17
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-48 Score=426.55 Aligned_cols=319 Identities=25% Similarity=0.460 Sum_probs=272.9
Q ss_pred CCccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCchhhHHHHHHHHHHHHHhcCCCcccchhHHhhhhhcc
Q 005687 107 GAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSPRKLVDNLNYIS 186 (683)
Q Consensus 107 p~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~ll~~L~~l~~~~~~ss~~~i~P~~fl~~L~~~~ 186 (683)
.+||+|+|.||||||+||+||.+..||+.+.......+. ....+..+|+++|. .++....+++...|...++|..
T Consensus 193 YVGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipTd~p~----grdSValaLQr~Fy-nlq~~~~PvdTteltrsfgWds 267 (1089)
T COG5077 193 YVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPTDHPR----GRDSVALALQRLFY-NLQTGEEPVDTTELTRSFGWDS 267 (1089)
T ss_pred eeeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCCCCCC----ccchHHHHHHHHHH-HHhccCCCcchHHhhhhcCccc
Confidence 499999999999999999999999999999876543322 22345568999997 4556778999999999988764
Q ss_pred ccccccccccHHHHHHHHHHHHHHhhccCCCCccccccCCCccceeecceEEEEEEEecCCCCcccccccceeeeeeecc
Q 005687 187 SFFQRYQQEDAHEFLQCLLDRLESCCLDSKTKDESLSSQGDNIVQRVFGGCLISKLQCCNCGSCSDTYEPLIDLSLEIED 266 (683)
Q Consensus 187 ~~f~~~~QQDA~Efl~~LLd~L~~e~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C~~Cg~~S~~~E~F~~LsL~I~~ 266 (683)
+..++|||.|||.+.|.|.|+....+ ..-.+.+..+|-|++.+.+.|.+-.+++.+.|.||+++|.+++
T Consensus 268 --~dsf~QHDiqEfnrVl~DnLEksmrg---------t~VEnaln~ifVgkmksyikCvnvnyEsarvedfwdiqlNvK~ 336 (1089)
T COG5077 268 --DDSFMQHDIQEFNRVLQDNLEKSMRG---------TVVENALNGIFVGKMKSYIKCVNVNYESARVEDFWDIQLNVKG 336 (1089)
T ss_pred --chHHHHHhHHHHHHHHHHHHHHhhcC---------ChhhhHHhHHHHHHhhceeeEEEechhhhhHHHHHHHHhcccc
Confidence 67899999999999999999985544 2334578889999999999999999999999999999999999
Q ss_pred cCChHHHHHhhhhhccccCCCCcccccccCccceeeeeeeeecCCceeEEEEeeeeec--CceeeeecceeecCcccccc
Q 005687 267 VGSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTD--GSYVVKIDKHVEFPLELDLK 344 (683)
Q Consensus 267 ~~sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K~~~I~~LP~vLiIhLkRF~~d--~~~~~Ki~~~V~FP~~LDLs 344 (683)
..+|+++++.|.+.|.++ |+|+|.|++-|- ++|.|...|.+||+||.+|||||.++ ...+.||+++.+||.++||.
T Consensus 337 ~knLqeSfr~yIqvE~l~-GdN~Y~ae~~Gl-qdAkKGViFeSlPpVlhlqLKRFeyDfe~d~mvKINDryEFP~eiDl~ 414 (1089)
T COG5077 337 MKNLQESFRRYIQVETLD-GDNRYNAEKHGL-QDAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYEFPLEIDLL 414 (1089)
T ss_pred hhhHHHHHHHhhhheecc-CCcccccccccc-hhhccceeeccCchHHHHHHHHhccccccCceeeecccccCcchhccc
Confidence 999999999999999996 599999998664 58999999999999999999999776 45789999999999999999
Q ss_pred ccccCCCCCC--cceeEEEeEEEEeecCCCCCCcEEEEEEcC-CCeEEEEeCCcceEeccccccC---------------
Q 005687 345 PYTSGGQNSD--VELKYHLYAIVEHMGSSPTCGHYFSYIRSS-PDTWHRLNDSRVTRVEEEFVLS--------------- 406 (683)
Q Consensus 345 ~y~~~~~~~~--~~~~YeL~AVV~H~G~s~~sGHY~ayvr~~-~~~Wy~fNDs~Vs~vs~eeV~s--------------- 406 (683)
+|+....+.. .++.|.|+||++|.|. .+.|||+|++|.. +|+||+|||++|+++.+.+|+.
T Consensus 415 pfld~da~ksen~d~vY~LygVlVHsGD-l~~GHyYallKpe~dg~WykfdDtrVtrat~kevleeNfGgd~~~~~k~r~ 493 (1089)
T COG5077 415 PFLDRDADKSENSDAVYVLYGVLVHSGD-LHEGHYYALLKPEKDGRWYKFDDTRVTRATEKEVLEENFGGDHPYKDKIRD 493 (1089)
T ss_pred cccCchhhhhcccCcEEEEEEEEEeccc-cCCceEEEEeccccCCCceeecceehhhHHHHHHHHHhcCCCCCCcccccC
Confidence 9998765533 3489999999999997 8889999999965 8999999999999999998872
Q ss_pred -------CCeEEEEEEEcCCcccchhhhhhhccCCCCCCCCCchhHHHhhhhcc
Q 005687 407 -------QDAYILFYAKQGTEWVSSLLEAESIGMNADISNSSPKSVLDNVENDY 453 (683)
Q Consensus 407 -------~~AYiLfY~R~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 453 (683)
-+||||+|-|++. .+..++|.....+|+++.+.+..+.
T Consensus 494 ~~~~kRfmsAYmLvYlRks~---------~ddLlnPV~a~diP~hv~e~l~eei 538 (1089)
T COG5077 494 HSGIKRFMSAYMLVYLRKSM---------LDDLLNPVAAVDIPPHVEEVLSEEI 538 (1089)
T ss_pred CchhhhhhhhheeeeehHhH---------HHhhhCchhhhhCCHHHHHhhCHHH
Confidence 2789999999764 2344667777789999988776643
No 18
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.3e-47 Score=407.82 Aligned_cols=275 Identities=24% Similarity=0.375 Sum_probs=223.2
Q ss_pred CCccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCC-----------CCCC-------CchhhHHHHHHHHHHHHHhc
Q 005687 107 GAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRP-----------CDGA-------TEGFCVICALRDHIELSLAS 168 (683)
Q Consensus 107 p~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~-----------~~~~-------~~~~~ll~~L~~l~~~~~~s 168 (683)
|+||.|+||||||||+||+|+++|+||++|+.+..... ..+. ....+++.+|+.||..|..+
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999998752211 0000 12346899999999988877
Q ss_pred CCCcccchhHHhhhhhccccccccccccHHHHHHHHHHHHHHhhccCCCCc----cccccCCCccceeecceEEEEEEEe
Q 005687 169 SGKVLSPRKLVDNLNYISSFFQRYQQEDAHEFLQCLLDRLESCCLDSKTKD----ESLSSQGDNIVQRVFGGCLISKLQC 244 (683)
Q Consensus 169 s~~~i~P~~fl~~L~~~~~~f~~~~QQDA~Efl~~LLd~L~~e~~~~~~~~----~~~~~~~~s~I~~lF~G~l~s~i~C 244 (683)
....+.|..|+..+.. .||||+||+..||++|+.++....... ........++|.++|+|++.+.++|
T Consensus 81 ~~~~v~P~~~l~~l~~--------~QQDa~Ef~~~lld~Le~~lk~~~~~~~~~~~~~~~~~~~~I~~lF~G~~~~~i~c 152 (343)
T cd02666 81 NTRSVTPSKELAYLAL--------RQQDVTECIDNVLFQLEVALEPISNAFAGPDTEDDKEQSDLIKRLFSGKTKQQLVP 152 (343)
T ss_pred CCCccCcHHHHHhccc--------cccchHHHHHHHHHHHHHHhcCccccccCcccccccchhhhhhHhceeeEEEEEEe
Confidence 7799999999987763 999999999999999999886533210 1112345689999999999999999
Q ss_pred cCCC---Ccccccccceeeeeeecc----------cCChHHHHHhhhhhccccCCCCcccccccCccceeeeeeeeecCC
Q 005687 245 CNCG---SCSDTYEPLIDLSLEIED----------VGSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVP 311 (683)
Q Consensus 245 ~~Cg---~~S~~~E~F~~LsL~I~~----------~~sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K~~~I~~LP 311 (683)
..|+ ..+.+.|+|++|+|+|.. ..+|.++|+.|+..|. |.++|
T Consensus 153 ~~~~~~~~~s~~~E~F~~L~l~I~~~~~~~~~~~~~~~L~d~L~~~~~~e~------------------------~~~~P 208 (343)
T cd02666 153 ESMGNQPSVRTKTERFLSLLVDVGKKGREIVVLLEPKDLYDALDRYFDYDS------------------------LTKLP 208 (343)
T ss_pred cccCCCCCCccccceeEEEEEecCcccccccccCCCCCHHHHHHHhcChhh------------------------hccCC
Confidence 9997 788999999999999985 6899999999998664 77999
Q ss_pred ceeEEEEeeeeecCceeeeecceeecCccccccccccCCCC--------------------------CCcceeEEEeEEE
Q 005687 312 SVAAFHLKRFKTDGSYVVKIDKHVEFPLELDLKPYTSGGQN--------------------------SDVELKYHLYAIV 365 (683)
Q Consensus 312 ~vLiIhLkRF~~d~~~~~Ki~~~V~FP~~LDLs~y~~~~~~--------------------------~~~~~~YeL~AVV 365 (683)
++|.|||+ +.+......+.+++.+||...|..++...... ......|+|+|||
T Consensus 209 ~vl~~qlq-~~~~~~~~~~~~dry~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Y~L~avv 287 (343)
T cd02666 209 QRSQVQAQ-LAQPLQRELISMDRYELPSSIDDIDELIREAIQSESSLVRQAQNELAELKHEIEKQFDDLKSYGYRLHAVF 287 (343)
T ss_pred HHHHHHHh-hcccccchheeeccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceEEEEEE
Confidence 99999999 54444455677888888887776665432111 1246789999999
Q ss_pred EeecCCCCCCcEEEEEEcC-CCeEEEEeCCcceEeccccccC------CCeEEEEEE
Q 005687 366 EHMGSSPTCGHYFSYIRSS-PDTWHRLNDSRVTRVEEEFVLS------QDAYILFYA 415 (683)
Q Consensus 366 ~H~G~s~~sGHY~ayvr~~-~~~Wy~fNDs~Vs~vs~eeV~s------~~AYiLfY~ 415 (683)
+|.|. .++|||++|+|.. ++.||+|||+.|++++.++|.. .+||||||.
T Consensus 288 ~H~G~-~~~GHY~~~~~~~~~~~W~~~dD~~V~~v~~~ev~~~~~~~~~~pY~l~Yv 343 (343)
T cd02666 288 IHRGE-ASSGHYWVYIKDFEENVWRKYNDETVTVVPASEVFLFTLGNTATPYFLVYV 343 (343)
T ss_pred EeecC-CCCCeEEEEEEECCCCeEEEEECCeeEEecHHHHhhcccCCCCCCEEEEeC
Confidence 99997 5999999999975 5899999999999999988874 589999994
No 19
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.5e-46 Score=378.22 Aligned_cols=219 Identities=29% Similarity=0.461 Sum_probs=188.4
Q ss_pred ccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCchhhHHHHHHHHHHHHHhcCCCcccchhHHhhhhhcccc
Q 005687 109 GLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSPRKLVDNLNYISSF 188 (683)
Q Consensus 109 GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~ll~~L~~l~~~~~~ss~~~i~P~~fl~~L~~~~~~ 188 (683)
||.|.|||||+|++.|+|+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~------------------------------------------------------------ 20 (228)
T cd02665 1 GLKNVGNTCWFSAVIQSLFS------------------------------------------------------------ 20 (228)
T ss_pred CccccCcchhHHHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999986
Q ss_pred ccccccccHHHHHHHHHHHHHHhhccCCCCccccccCCCccceeecceEEEEEEEecCCCCcccccccceeeeeeecccC
Q 005687 189 FQRYQQEDAHEFLQCLLDRLESCCLDSKTKDESLSSQGDNIVQRVFGGCLISKLQCCNCGSCSDTYEPLIDLSLEIEDVG 268 (683)
Q Consensus 189 f~~~~QQDA~Efl~~LLd~L~~e~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C~~Cg~~S~~~E~F~~LsL~I~~~~ 268 (683)
.||||+||+..||+.|++.+...... ........++|.++|+|++.+++.| |+..+.+.|+|++|+|+|.+..
T Consensus 21 ----~QQDa~Ef~~~Lld~Le~~l~~~~~~-~~~~~~~~~~i~~lF~G~~~~~~~~--~~~~s~~~E~F~~L~l~i~~~~ 93 (228)
T cd02665 21 ----QQQDVSEFTHLLLDWLEDAFQAAAEA-ISPGEKSKNPMVQLFYGTFLTEGVL--EGKPFCNCETFGQYPLQVNGYG 93 (228)
T ss_pred ----HHHHHHHHHHHHHHHHHHHhcccccc-ccccccccchHhhceEEEEEEEEEE--CCCcccccCccEEEEEEECCCC
Confidence 79999999999999999987643211 1122356779999999999987777 7888999999999999999999
Q ss_pred ChHHHHHhhhhhccccCCCCcccccccCccceeeeeeeeecCCceeEEEEeeeeecCceeeeecceeecCcccccccccc
Q 005687 269 SLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTDGSYVVKIDKHVEFPLELDLKPYTS 348 (683)
Q Consensus 269 sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K~~~I~~LP~vLiIhLkRF~~d~~~~~Ki~~~V~FP~~LDLs~y~~ 348 (683)
+|++||+.|+.++.+++ + .| .....+.++..|.+||+||+|||+||.++.....|+++.|.||.+|
T Consensus 94 ~L~e~L~~~~~ee~l~~-~---~~---~~~~~~~~~~~i~~lP~vL~i~LkRF~~~~~~~~Ki~~~v~FP~~l------- 159 (228)
T cd02665 94 NLHECLEAAMFEGEVEL-L---PS---DHSVKSGQERWFTELPPVLTFELSRFEFNQGRPEKIHDKLEFPQII------- 159 (228)
T ss_pred CHHHHHHHhhhhccccc-c---cc---cchhhhhhhhhhhhCChhhEEEeEeeEEcCCccEECCEEEEeeCcc-------
Confidence 99999999999888875 2 22 2234456777899999999999999999887788999999999987
Q ss_pred CCCCCCcceeEEEeEEEEeecCCCCCCcEEEEEEcC-CCeEEEEeCCcceEeccccccC--------CCeEEEEEE
Q 005687 349 GGQNSDVELKYHLYAIVEHMGSSPTCGHYFSYIRSS-PDTWHRLNDSRVTRVEEEFVLS--------QDAYILFYA 415 (683)
Q Consensus 349 ~~~~~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr~~-~~~Wy~fNDs~Vs~vs~eeV~s--------~~AYiLfY~ 415 (683)
....|+|+|||+|.|. +++|||+||+|.. +++||+|||+.|+++++++|.. .+||||||.
T Consensus 160 ------~~~~Y~L~aVi~H~G~-~~~GHY~~~i~~~~~~~W~~fdD~~V~~~~~~~v~~~~fGg~~~~~AYiLfYv 228 (228)
T cd02665 160 ------QQVPYELHAVLVHEGQ-ANAGHYWAYIYKQSRQEWEKYNDISVTESSWEEVERDSFGGGRNPSAYCLMYI 228 (228)
T ss_pred ------CCceeEEEEEEEecCC-CCCCEEEEEEEcCCCCEEEEEECCeeEEcCHHHHhhhccCCCCCCceEEEEEC
Confidence 1348999999999997 8999999999864 7899999999999999998863 589999994
No 20
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-46 Score=425.80 Aligned_cols=310 Identities=36% Similarity=0.561 Sum_probs=253.7
Q ss_pred CCCccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCCCC--CCCchhhHHHHHHHHHHHHHhc-CCCcccchhHHhhh
Q 005687 106 VGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCD--GATEGFCVICALRDHIELSLAS-SGKVLSPRKLVDNL 182 (683)
Q Consensus 106 ~p~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~--~~~~~~~ll~~L~~l~~~~~~s-s~~~i~P~~fl~~L 182 (683)
..+||.|+|||||||++||||+.++.|+..+++.......+ .......+..++..++...+.. ....+.|..|+..+
T Consensus 300 ~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~~~~~s~~P~~f~~~~ 379 (653)
T KOG1868|consen 300 GCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHGHGQFSVLPRRFIRVL 379 (653)
T ss_pred CCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccCCCceecCcHHHHHHH
Confidence 45899999999999999999999999996655542221111 1222223444555555444443 56789999999999
Q ss_pred hhccccccccccccHHHHHHHHHHHHHHhhccCCCC------------------ccc--------cccCCCccceeecce
Q 005687 183 NYISSFFQRYQQEDAHEFLQCLLDRLESCCLDSKTK------------------DES--------LSSQGDNIVQRVFGG 236 (683)
Q Consensus 183 ~~~~~~f~~~~QQDA~Efl~~LLd~L~~e~~~~~~~------------------~~~--------~~~~~~s~I~~lF~G 236 (683)
....+.|.++.|||||||+.++++.||+++...... ... .....+..|.++|.|
T Consensus 380 ~~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~~~d~~i~~lf~g 459 (653)
T KOG1868|consen 380 KRYSPNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLEEEDSKIGDLFVG 459 (653)
T ss_pred hhcccccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhccccchHHHHHHHH
Confidence 999999999999999999999999999988663221 000 001234458999999
Q ss_pred EEEEEEEecCCCCcccccccceeeeeeeccc------CChHHHHHhhhhhccccCCCCcccccccCccceee--eeeeee
Q 005687 237 CLISKLQCCNCGSCSDTYEPLIDLSLEIEDV------GSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVE--KQLMLD 308 (683)
Q Consensus 237 ~l~s~i~C~~Cg~~S~~~E~F~~LsL~I~~~------~sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~--K~~~I~ 308 (683)
++.+.++|..||+.+.++++|++|+|+|+.. .+|++|+..|+..|+++ +++.|.|++|++..... |++.|+
T Consensus 460 Q~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~~~~~~L~~C~~~ft~~ekle-~~~~w~Cp~c~~~~~~~~lK~~~i~ 538 (653)
T KOG1868|consen 460 QLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFAGGKVSLEDCLSLFTKEEKLE-GDEAWLCPRCKHKESSKTLKKLTIL 538 (653)
T ss_pred HHHhheehhhcCCcceeeecceeeEEecccccccccccchHhhhccccchhhcc-cccccCCccccCcccccccceeeee
Confidence 9999999999999999999999999999842 35999999999999996 48899999999999885 999999
Q ss_pred cCCceeEEEEeeeeecCceeeeecceeecCc-cccccccccCCCCCCcceeEEEeEEEEeecCCCCCCcEEEEEEcC-CC
Q 005687 309 KVPSVAAFHLKRFKTDGSYVVKIDKHVEFPL-ELDLKPYTSGGQNSDVELKYHLYAIVEHMGSSPTCGHYFSYIRSS-PD 386 (683)
Q Consensus 309 ~LP~vLiIhLkRF~~d~~~~~Ki~~~V~FP~-~LDLs~y~~~~~~~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr~~-~~ 386 (683)
+||++|+|||+||..+.+...|....|+||. .+++.++.....+ ....|+|+|||+|.| +.++|||+|||+.. .+
T Consensus 539 ~lp~iLiihL~Rf~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~~~--~~~~Y~L~aVv~H~G-tl~sGHYta~~~~~~~~ 615 (653)
T KOG1868|consen 539 RLPKILIIHLKRFSSDGNSFNKLSTGVDFPLREADLSPRFAEKGN--NPKSYRLYAVVNHSG-TLNSGHYTAYVYKNEKQ 615 (653)
T ss_pred cCCHHHHHHHHHhccCcccccccceeeccchHhhhhchhccccCC--CccceeeEEEEeccC-cccCCceEEEEeecCCC
Confidence 9999999999999999878889999999999 5777766554433 345699999999999 69999999999764 67
Q ss_pred eEEEEeCCcceEeccccccCCCeEEEEEEEcCC
Q 005687 387 TWHRLNDSRVTRVEEEFVLSQDAYILFYAKQGT 419 (683)
Q Consensus 387 ~Wy~fNDs~Vs~vs~eeV~s~~AYiLfY~R~~~ 419 (683)
.||.|||+.|+.++..++.+..||||||.|.+.
T Consensus 616 ~W~~fdDs~Vs~~~~~~~~~s~aYIlFY~~~~~ 648 (653)
T KOG1868|consen 616 RWFTFDDSEVSPISETDVGSSSAYILFYERLGI 648 (653)
T ss_pred ceEEecCeeeeccccccccCCCceEEEeecCCc
Confidence 899999999999999999999999999999764
No 21
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-47 Score=416.78 Aligned_cols=306 Identities=30% Similarity=0.487 Sum_probs=261.6
Q ss_pred CCCCCCCccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCchhhHHHHHHHHHHHHHhcCCCcccchhHHhh
Q 005687 102 KPTGVGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSPRKLVDN 181 (683)
Q Consensus 102 ~p~~~p~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~ll~~L~~l~~~~~~ss~~~i~P~~fl~~ 181 (683)
.|....+||+|-|+|||||+++|-|.++|.++..+....+........-...++++++.+|..+..+.-+++-|..|...
T Consensus 90 Rpp~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~td~pd~s~~e~vl~~lQ~iF~hL~~s~lQyyVPeg~Wk~ 169 (944)
T KOG1866|consen 90 RPPEGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLPDMSGDEKVLRHLQVIFGHLAASQLQYYVPEGFWKQ 169 (944)
T ss_pred CCCcceeeecCCCchHHHhhhhhhhhhcccccchhhhhcccccchhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHH
Confidence 44455699999999999999999999999999988776554111011112238999999999888777889999999999
Q ss_pred hhhccccccccccccHHHHHHHHHHHHHHhhccCCCCccccccCCCccceeecceEEEEEEEecCCCCcccccccceeee
Q 005687 182 LNYISSFFQRYQQEDAHEFLQCLLDRLESCCLDSKTKDESLSSQGDNIVQRVFGGCLISKLQCCNCGSCSDTYEPLIDLS 261 (683)
Q Consensus 182 L~~~~~~f~~~~QQDA~Efl~~LLd~L~~e~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C~~Cg~~S~~~E~F~~Ls 261 (683)
++.........+||||-|||..|||.+++.+++... .-++.+.|+|.+..+-.|..|-+.....|+|+.|+
T Consensus 170 Fr~~~~pln~reqhDA~eFf~sLld~~De~LKklg~---------p~lf~n~f~G~ysdqKIC~~CpHRY~~eE~F~~l~ 240 (944)
T KOG1866|consen 170 FRLWGEPLNLREQHDALEFFNSLLDSLDEALKKLGH---------PQLFSNTFGGSYSDQKICQGCPHRYECEESFTTLN 240 (944)
T ss_pred hhccCCccchHhhhhHHHHHHHHHHHHHHHHHHhCC---------cHHHHHHhcCccchhhhhccCCcccCccccceeee
Confidence 988777788899999999999999999998876433 34788899999999999999999999999999999
Q ss_pred eeecccCChHHHHHhhhhhccccCCCCcccccccCccceeeeeeeeecCCceeEEEEeeeeec--CceeeeecceeecCc
Q 005687 262 LEIEDVGSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTD--GSYVVKIDKHVEFPL 339 (683)
Q Consensus 262 L~I~~~~sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K~~~I~~LP~vLiIhLkRF~~d--~~~~~Ki~~~V~FP~ 339 (683)
|.|. ..+|+++|++|.+.|.++| .|.|+|++|++++...|+..|.+||++|+|||+||.|| +....|.+..+.||.
T Consensus 241 l~i~-~~nLeesLeqfv~gevlEG-~nAYhCeKCdeK~~TvkRt~ik~LPsvl~IqLkRF~yD~e~~~~iK~n~~frFP~ 318 (944)
T KOG1866|consen 241 LDIR-HQNLEESLEQFVKGEVLEG-ANAYHCEKCDEKVDTVKRTCIKKLPSVLAIQLKRFDYDWERECAIKFNDYFRFPR 318 (944)
T ss_pred eecc-cchHHHHHHHHHHHHHhcC-cchhhhhhhhhhhHhHHHHHHhhCChhheehhhhccchhhhccccccchhcccch
Confidence 9998 7899999999999999986 78899999999999999999999999999999999877 445679999999999
Q ss_pred cccccccccCCCC---------------CCcceeEEEeEEEEeecCCCCCCcEEEEEEcC----CCeEEEEeCCcceEec
Q 005687 340 ELDLKPYTSGGQN---------------SDVELKYHLYAIVEHMGSSPTCGHYFSYIRSS----PDTWHRLNDSRVTRVE 400 (683)
Q Consensus 340 ~LDLs~y~~~~~~---------------~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr~~----~~~Wy~fNDs~Vs~vs 400 (683)
+|||.||+..+.- .....+|+|+|||+|+|. +++|||++||++. .++||+|||..|++..
T Consensus 319 ~ldMePYtvsg~a~~e~~~~~~g~~~e~s~~t~~YeLvGVlvHSGq-AsaGHYySfIk~rr~~~~~kWykfnD~~Vte~~ 397 (944)
T KOG1866|consen 319 ELDMEPYTVSGVAKLEGENVESGQQLEQSAGTTKYELVGVLVHSGQ-ASAGHYYSFIKQRRGEDGNKWYKFNDGDVTECK 397 (944)
T ss_pred hhcCCceeehhhhhhccccCCcCcccccccCcceeEEEEEEEeccc-ccCcchhhhhhhhccCCCCceEeccCccccccc
Confidence 9999999854311 123479999999999996 8999999999752 5699999999999998
Q ss_pred cccccC--------------------CCeEEEEEEEcCC
Q 005687 401 EEFVLS--------------------QDAYILFYAKQGT 419 (683)
Q Consensus 401 ~eeV~s--------------------~~AYiLfY~R~~~ 419 (683)
-.++.. -+||||||+|.+.
T Consensus 398 ~n~me~~cfGGey~q~~~~~~~rrR~WNAYmlFYer~~d 436 (944)
T KOG1866|consen 398 MNEMENECFGGEYMQMMKRMSYRRRWWNAYMLFYERMDD 436 (944)
T ss_pred hhhHHHHhhcchhhhcccccchHHHhhhhHHHHHHHhcC
Confidence 766541 2899999999764
No 22
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=5.1e-45 Score=373.86 Aligned_cols=254 Identities=35% Similarity=0.623 Sum_probs=205.3
Q ss_pred CCccccCCCccchHHHHHHHhCCHHHHHHHHhCCCC---CCCCCCCchhhHHHHHHHHHHHHHhc--CCCcccchhHHhh
Q 005687 107 GAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHP---RPCDGATEGFCVICALRDHIELSLAS--SGKVLSPRKLVDN 181 (683)
Q Consensus 107 p~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~---~~~~~~~~~~~ll~~L~~l~~~~~~s--s~~~i~P~~fl~~ 181 (683)
|+||.|.||||||||+||+|+++|+|+++|.+.... ..........+++++|+.+|..++.. ....+.|..|+.+
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~ 80 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINA 80 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHH
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccc
Confidence 589999999999999999999999999999975110 01111333457899999999988876 5689999999999
Q ss_pred hhhccccccccccccHHHHHHHHHHHHHHhhccCCCC--ccccccCCCccceeecceEEEEEEEecCCCCccccccccee
Q 005687 182 LNYISSFFQRYQQEDAHEFLQCLLDRLESCCLDSKTK--DESLSSQGDNIVQRVFGGCLISKLQCCNCGSCSDTYEPLID 259 (683)
Q Consensus 182 L~~~~~~f~~~~QQDA~Efl~~LLd~L~~e~~~~~~~--~~~~~~~~~s~I~~lF~G~l~s~i~C~~Cg~~S~~~E~F~~ 259 (683)
|+...+.|..+.||||+|||..||+.|++++...... .........+++.++|.+++...+.|..|+..
T Consensus 81 l~~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~c~~c~~~--------- 151 (269)
T PF00443_consen 81 LSSINPSFSNGEQQDAHEFLSFLLDWLDEEFNSSFKRKSWKNTNSSEDSLISDLFGGQFESSIKCSSCKNS--------- 151 (269)
T ss_dssp HHHHCGGGGSSSTEEHHHHHHHHHHHHHHHHTSCSSHHHHHHHHCCEESHHHHHH-EEEEEEEEETTTTCE---------
T ss_pred ccccccccccccccchhhhhcccccccchhhcccccccccccccccccccccccccccccccccccccccc---------
Confidence 9999999999999999999999999999987653220 01122345678899999999999999999975
Q ss_pred eeeeecccCChHHHHHhhhhhccccCCCCcccccccCccceeeeeeeeecCCceeEEEEeeeeecCc--eeeeecceeec
Q 005687 260 LSLEIEDVGSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTDGS--YVVKIDKHVEF 337 (683)
Q Consensus 260 LsL~I~~~~sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K~~~I~~LP~vLiIhLkRF~~d~~--~~~Ki~~~V~F 337 (683)
...|.++|++|+|+|+||.++.. ...|+...|.|
T Consensus 152 --------------------------------------------~~~~~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~ 187 (269)
T PF00443_consen 152 --------------------------------------------QSSISSLPPILIIQLKRFEFDQETGRSKKINNPVEF 187 (269)
T ss_dssp --------------------------------------------EEEEEEBBSEEEEEEE-EEEESTSSEEEE--CEEB-
T ss_pred --------------------------------------------ccccccccceeeeccccceecccccccccccccccc
Confidence 45688999999999999976654 57899999999
Q ss_pred C-ccccccccccCCCC-CCcceeEEEeEEEEeecCCCCCCcEEEEEEcCC-CeEEEEeCCcceEeccccccC---CCeEE
Q 005687 338 P-LELDLKPYTSGGQN-SDVELKYHLYAIVEHMGSSPTCGHYFSYIRSSP-DTWHRLNDSRVTRVEEEFVLS---QDAYI 411 (683)
Q Consensus 338 P-~~LDLs~y~~~~~~-~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr~~~-~~Wy~fNDs~Vs~vs~eeV~s---~~AYi 411 (683)
| .+|||.+|+..... ......|+|+|||+|.| +.++|||+||||..+ ++||+|||+.|+++++++|.. ..|||
T Consensus 188 ~~~~l~l~~~~~~~~~~~~~~~~Y~L~avi~H~G-~~~~GHY~a~v~~~~~~~W~~~dD~~v~~~~~~~v~~~~~~~~yl 266 (269)
T PF00443_consen 188 PLEELDLSPYLEKNNSECQSNVKYRLVAVIVHYG-SADSGHYVAYVRDSDDGKWYKFDDSRVTEVSWEEVIKSSNSTAYL 266 (269)
T ss_dssp -SSEEEGGGGBSSCCCTHTSSSEEEEEEEEEEES-STTSEEEEEEEEETTTTEEEEEETTEEEEESHHHHCCGGSTCEEE
T ss_pred Cchhhhhhhhhccccccccccceeeehhhhcccc-ccccceEEEeeccccCCeEEEeeCCceEECCHHHHhhccCCceEE
Confidence 9 69999999876532 12357999999999999 799999999998864 579999999999999999988 89999
Q ss_pred EEE
Q 005687 412 LFY 414 (683)
Q Consensus 412 LfY 414 (683)
|||
T Consensus 267 l~Y 269 (269)
T PF00443_consen 267 LFY 269 (269)
T ss_dssp EEE
T ss_pred EeC
Confidence 999
No 23
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-44 Score=392.73 Aligned_cols=295 Identities=25% Similarity=0.393 Sum_probs=253.9
Q ss_pred CCCCCccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCchhhHHHHHHHHHHHHHhcC----------CCcc
Q 005687 104 TGVGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASS----------GKVL 173 (683)
Q Consensus 104 ~~~p~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~ll~~L~~l~~~~~~ss----------~~~i 173 (683)
++..+||.|+||+||||||||+|+.+|.|........+...+....+..++-|+|..+...|+... +..|
T Consensus 304 gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p~~~~~~qngI 383 (763)
T KOG0944|consen 304 GPGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQERIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKPLMDPSNQNGI 383 (763)
T ss_pred CCCccceeecCcchhHHHHHHHheecccHHHhhccccceeecCCCCcchhHHHHHHHHHHHhhcCcccCccCCccccCCc
Confidence 445699999999999999999999999999877665444455556777899999999998777532 2479
Q ss_pred cchhHHhhhhhccccccccccccHHHHHHHHHHHHHHhhccCCCCccccccCCCccceeecceEEEEEEEecCCCCcccc
Q 005687 174 SPRKLVDNLNYISSFFQRYQQEDAHEFLQCLLDRLESCCLDSKTKDESLSSQGDNIVQRVFGGCLISKLQCCNCGSCSDT 253 (683)
Q Consensus 174 ~P~~fl~~L~~~~~~f~~~~QQDA~Efl~~LLd~L~~e~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C~~Cg~~S~~ 253 (683)
.|..|+..+++-.+.|+..+||||+|||.+||+.|++..... ...+.++|...+..++.|..|.+++++
T Consensus 384 sP~mFK~~igknHpeFst~~QQDA~EFllfLl~ki~~n~rs~-----------~~nptd~frF~ve~Rv~C~~c~kVrYs 452 (763)
T KOG0944|consen 384 SPLMFKALIGKNHPEFSTNRQQDAQEFLLFLLEKIRENSRSS-----------LPNPTDLFRFEVEDRVSCLGCRKVRYS 452 (763)
T ss_pred CHHHHHHHHcCCCccccchhhhhHHHHHHHHHHHHhhccccc-----------CCCHHHHHHhhhhhhhhhhcccccccc
Confidence 999999999999999999999999999999999998753321 146788999999999999999999999
Q ss_pred cccceeeeeeeccc------CChHHHHHhhhhhccccCCCCcccccccCccceeeeeeeeecCCceeEEEEeeeeecCce
Q 005687 254 YEPLIDLSLEIEDV------GSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTDGSY 327 (683)
Q Consensus 254 ~E~F~~LsL~I~~~------~sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K~~~I~~LP~vLiIhLkRF~~d~~~ 327 (683)
.+.-+.|.|+|+.. ..+..||+.|+.+ .+++ |.|..|+.+..|.|...|.++|+||+||+.||.+....
T Consensus 453 ~~~~~~i~lpv~~~~~v~~~v~~~~cleaff~p-q~~d----f~s~ac~~K~~a~kt~~~ksfP~yLiiqv~rf~~~dw~ 527 (763)
T KOG0944|consen 453 YESEYLIQLPVPMTNEVREKVPISACLEAFFEP-QVDD----FWSTACGEKKGATKTTRFKSFPDYLIIQVGRFTLQDWV 527 (763)
T ss_pred chhheeeEeeccccccccccCCHHHHHHHhcCC-cchh----hhhHhhcCccccccccccccCCceEEEEeeEEEecCce
Confidence 99999999999753 3899999999998 5544 99999999999999999999999999999999998888
Q ss_pred eeeecceeecCccccccccccCCC-------------------C------------------------------------
Q 005687 328 VVKIDKHVEFPLELDLKPYTSGGQ-------------------N------------------------------------ 352 (683)
Q Consensus 328 ~~Ki~~~V~FP~~LDLs~y~~~~~-------------------~------------------------------------ 352 (683)
.+|+...|+.|+.||++.|..... +
T Consensus 528 pkKld~~iempe~ldls~~rs~g~~p~ee~lpde~~~~~~~~~d~s~i~qL~~MGFp~eac~rAly~tgN~~aEaA~NWl 607 (763)
T KOG0944|consen 528 PKKLDVSIEMPEELDLSSYRSKGLQPGEEALPDEAPETSEFAADRSVISQLVEMGFPEEACRRALYYTGNSGAEAASNWL 607 (763)
T ss_pred eeeeccceecchhhchhhhhhcCCCCcccccCCcCcccCccchhHHHHHHHHHcCCCHHHHHHHHhhhcCccHHHHHHHH
Confidence 899999999999999999875441 0
Q ss_pred --------------------------------------------------------------------------------
Q 005687 353 -------------------------------------------------------------------------------- 352 (683)
Q Consensus 353 -------------------------------------------------------------------------------- 352 (683)
T Consensus 608 ~~HMdDpd~~~p~vvp~~~~~a~~~~~~e~~v~si~smGf~~~qa~~aL~~~n~nveravDWif~h~d~~~ed~~~~~s~ 687 (763)
T KOG0944|consen 608 MEHMDDPDIDDPFVVPGNSPKADAREVDEESVASIVSMGFSRNQAIKALKATNNNVERAVDWIFSHMDIPVEDAAEGESS 687 (763)
T ss_pred HHhccCcccCCceecCCCCCccccCCCChhHheeeeeecCcHHHHHHHHHhcCccHHHHHHHHHhcccccccccCcCCCC
Confidence
Q ss_pred -------------CCcceeEEEeEEEEeecCCCCCCcEEEEEEcCCCeEEEEeCCcceEeccccccCCCeEEEEEEEc
Q 005687 353 -------------SDVELKYHLYAIVEHMGSSPTCGHYFSYIRSSPDTWHRLNDSRVTRVEEEFVLSQDAYILFYAKQ 417 (683)
Q Consensus 353 -------------~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr~~~~~Wy~fNDs~Vs~vs~eeV~s~~AYiLfY~R~ 417 (683)
.+.+.+|.|+|+|.|.|+++++|||+||+|. .|+|..|||++|- .+. +-.+..+||+||+|.
T Consensus 688 ~~~~~~~~~~~~~~dg~~~Y~L~a~IsHmGts~~sGHYV~hirK-egkWVlfNDeKv~-~S~-~ppK~lgYvY~y~R~ 762 (763)
T KOG0944|consen 688 SAIESESTPSGTGKDGPGKYALFAFISHMGTSAHSGHYVCHIRK-EGKWVLFNDEKVA-ASQ-EPPKDLGYVYLYTRI 762 (763)
T ss_pred CcchhhcCCcccCCCCCcceeEEEEEecCCCCCCCcceEEEEee-cCcEEEEcchhhh-hcc-CChhhcceEEEEEec
Confidence 0334689999999999999999999999999 5999999999998 222 234678999999995
No 24
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-44 Score=401.26 Aligned_cols=307 Identities=38% Similarity=0.616 Sum_probs=265.6
Q ss_pred CCccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCchhhHHHHHHHHHHHHHhcC-CCcccchhHHhhhhhc
Q 005687 107 GAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASS-GKVLSPRKLVDNLNYI 185 (683)
Q Consensus 107 p~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~ll~~L~~l~~~~~~ss-~~~i~P~~fl~~L~~~ 185 (683)
..||.|+|||||||++||+|.+.+..+...+...+.... ......|+.+++.+++..++... +..+.|..+++.++..
T Consensus 161 l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~-~~~~~~~l~~~~~~~~~~~~s~~~~~~~sp~~~l~~~~k~ 239 (492)
T KOG1867|consen 161 LRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKEP-SSSGSSCLVCDLDRLFQALYSGHNRTPYSPFELLNLVWKH 239 (492)
T ss_pred ccccccccHHHHHHHHHHHhhccchhhccchhhhcccCC-CCCCCcchhhhhhhhhhHhhcCCCCCCcChHHHHHHHHHh
Confidence 479999999999999999999999988887776665221 12336789999999999888888 8899999999999999
Q ss_pred cccccccccccHHHHHHHHHHHHHHhhccCCCCccccc---cCCCccceeecceEEEEEEEecCCCCcccccccceeeee
Q 005687 186 SSFFQRYQQEDAHEFLQCLLDRLESCCLDSKTKDESLS---SQGDNIVQRVFGGCLISKLQCCNCGSCSDTYEPLIDLSL 262 (683)
Q Consensus 186 ~~~f~~~~QQDA~Efl~~LLd~L~~e~~~~~~~~~~~~---~~~~s~I~~lF~G~l~s~i~C~~Cg~~S~~~E~F~~LsL 262 (683)
.+.+.++.||||+||+..+++.++... +......... ....++++..|.|.+.+.++|..|+..+.++++|++|+|
T Consensus 240 ~~~~~g~~Qqda~eF~~~~~~~~~~~~-~~~~k~~~~~~~~~~c~~iv~~~F~G~L~~~v~c~~c~~~S~~~dpf~disL 318 (492)
T KOG1867|consen 240 SPNLAGYEQQDAHEFLIALLDRLHREK-DDCGKSLIASQSNKQCPCIVHTIFSGTLQSDVTCQTCGSKSTTYDPFMDISL 318 (492)
T ss_pred CcccccccccchHHHHHHhcccccccc-cccccccccccCCcccccccceeecceeccceeehhhcceeeeccCccceee
Confidence 999999999999999999999999876 1111111111 144789999999999999999999999999999999999
Q ss_pred eeccc----------CChHHHHHhhhhhccccCCCCcccccccCccceeeeeeeeecCCceeEEEEeeeeecCceee-ee
Q 005687 263 EIEDV----------GSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTDGSYVV-KI 331 (683)
Q Consensus 263 ~I~~~----------~sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K~~~I~~LP~vLiIhLkRF~~d~~~~~-Ki 331 (683)
+|+.. .++.+++..+...+.... ..++.|..|+.+..++|++.|.++|.+|.+|++||.+...... |+
T Consensus 319 ~i~~~~~~~~~~~~~~~~~~cl~~~~~~~~~~~-~~~~~c~~c~~~~~~~kql~~~~lP~~l~~~lkRfe~~~~~~~~ki 397 (492)
T KOG1867|consen 319 DIPDQFTSSSVRSPELTLLDCLDRFTRSEQLGK-DSKYKCSSCKSKQESTKQLTIRKLPAVLCLHLKRFEHSATGAREKI 397 (492)
T ss_pred ecchhccCcccccchhhhhhhhhhhhhhhhcCc-ccccccCCcccccccccccccccCCceeeeeecccccccccccccc
Confidence 99743 568999999998887754 6779999999999999999999999999999999998865444 99
Q ss_pred cceeecCccccccccccCCCC---CCcceeEEEeEEEEeecCCCCCCcEEEEEEcCCCeEEEEeCCcceEeccccccCCC
Q 005687 332 DKHVEFPLELDLKPYTSGGQN---SDVELKYHLYAIVEHMGSSPTCGHYFSYIRSSPDTWHRLNDSRVTRVEEEFVLSQD 408 (683)
Q Consensus 332 ~~~V~FP~~LDLs~y~~~~~~---~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr~~~~~Wy~fNDs~Vs~vs~eeV~s~~ 408 (683)
...|.||..|+|.+|+..+.. +.....|+|+|||+|+|. .++|||+||+|. .+.||+|||+.|+.+++++|++..
T Consensus 398 ~~~v~fp~~l~m~p~~~~~~~~~~~~~~~~Y~L~AVV~H~G~-~~SGHY~aY~r~-~~~~~~~dDs~v~~~s~~eVl~~~ 475 (492)
T KOG1867|consen 398 DSYVSFPVLLNMKPYCSSEKLKSQDNPDHLYELRAVVVHHGT-VGSGHYVAYRRQ-SGGWFKCDDSTVTKVSEEEVLSSQ 475 (492)
T ss_pred CcccccchhhcCCccccccccccCCCCCceEEEEEEEEeccC-CCCCceEEEEEe-CCCcEEEcCeEEEEeeHHHhhhch
Confidence 999999999999999986322 234689999999999997 999999999998 677999999999999999999999
Q ss_pred eEEEEEEEcC
Q 005687 409 AYILFYAKQG 418 (683)
Q Consensus 409 AYiLfY~R~~ 418 (683)
||+|||.+..
T Consensus 476 aylLFY~~~~ 485 (492)
T KOG1867|consen 476 AYLLFYTQEQ 485 (492)
T ss_pred hhheehhHHh
Confidence 9999999864
No 25
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.3e-44 Score=367.44 Aligned_cols=236 Identities=25% Similarity=0.392 Sum_probs=188.5
Q ss_pred cccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCchhhHHHHHHHHHHHHHhcCCCcccchhHHhhhhhccccc
Q 005687 110 LENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSPRKLVDNLNYISSFF 189 (683)
Q Consensus 110 L~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~ll~~L~~l~~~~~~ss~~~i~P~~fl~~L~~~~~~f 189 (683)
|.|.||.||+||++|+|..+ +...+.|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i-----------------------------------------------------~~~~~~F 28 (245)
T cd02673 2 LVNTGNSCYFNSTMQALSSI-----------------------------------------------------GKINTEF 28 (245)
T ss_pred ceecCCeeeehhHHHHHHHH-----------------------------------------------------hhhhhhc
Confidence 78999999999999998643 1123458
Q ss_pred cccccccHHHHHHHHHHHHHHhhccCCCCccc-cccCCCccceeecceEEEEEEEecCCCCcccccccceeeeeeeccc-
Q 005687 190 QRYQQEDAHEFLQCLLDRLESCCLDSKTKDES-LSSQGDNIVQRVFGGCLISKLQCCNCGSCSDTYEPLIDLSLEIEDV- 267 (683)
Q Consensus 190 ~~~~QQDA~Efl~~LLd~L~~e~~~~~~~~~~-~~~~~~s~I~~lF~G~l~s~i~C~~Cg~~S~~~E~F~~LsL~I~~~- 267 (683)
.+++||||||||++|||.|++++......... ..........++|+|++.+.++|..|++++.+.|+|++|+|+++..
T Consensus 29 ~~~~QQDAhEFL~~LLd~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~l~s~i~C~~C~~~s~~~e~~~~L~L~i~~~~ 108 (245)
T cd02673 29 DNDDQQDAHEFLLTLLEAIDDIMQVNRTNVPPSNIEIKRLNPLEAFKYTIESSYVCIGCSFEENVSDVGNFLDVSMIDNK 108 (245)
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHhhcccCCCCcccccccCHhHheeeEEEeEEEecCCCCeeeeccccceeccccccCC
Confidence 89999999999999999999876442111110 0111112345789999999999999999999999999999999863
Q ss_pred -CChHHHHHhhhhhccccCCCCcccccccCccceeeeeeeeecCCceeEEEEeeeeecCceeeeecceeecCcccccccc
Q 005687 268 -GSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTDGSYVVKIDKHVEFPLELDLKPY 346 (683)
Q Consensus 268 -~sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K~~~I~~LP~vLiIhLkRF~~d~~~~~Ki~~~V~FP~~LDLs~y 346 (683)
..|++++..|...+.++ |.|++|+.. .+.++.+|.++|+||+|||+||.+... +...+.+. .+++.+|
T Consensus 109 ~~~le~l~~~~~~~~~~e-----~~C~~C~~~-~a~k~~~i~~~P~vL~i~lkRf~~~~~----~~~~~~~~-~~~~~~~ 177 (245)
T cd02673 109 LDIDELLISNFKTWSPIE-----KDCSSCKCE-SAISSERIMTFPECLSINLKRYKLRIA----TSDYLKKN-EEIMKKY 177 (245)
T ss_pred cchHHHHHHHhhcccccC-----ccCCCCCCc-cceeechhhhCChhhEEeeEeeeeccc----cccccccc-ccccccc
Confidence 56788888888776664 899999986 788889999999999999999976542 22222222 4567777
Q ss_pred ccCCCCCCcceeEEEeEEEEeecCCCCCCcEEEEEEcC--CCeEEEEeCCcceEecccccc---CCCeEEEEEE
Q 005687 347 TSGGQNSDVELKYHLYAIVEHMGSSPTCGHYFSYIRSS--PDTWHRLNDSRVTRVEEEFVL---SQDAYILFYA 415 (683)
Q Consensus 347 ~~~~~~~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr~~--~~~Wy~fNDs~Vs~vs~eeV~---s~~AYiLfY~ 415 (683)
+. ....|+|+|||+|.|.++++|||+||+|.. .++||.|||+.|+++++++|. +..||||||+
T Consensus 178 ~~------~~~~Y~L~~VV~H~G~~~~~GHY~a~vk~~~~~~~Wy~fnD~~V~~v~~~~v~~~~~~~aYiLFY~ 245 (245)
T cd02673 178 CG------TDAKYSLVAVICHLGESPYDGHYIAYTKELYNGSSWLYCSDDEIRPVSKNDVSTNARSSGYLIFYD 245 (245)
T ss_pred cC------CCceEEEEEEEEECCCCCCCceEEEEEEcCCCCCeEEEeeCceeeEcCHHHHhhccCCceEEEEEC
Confidence 64 245799999999999888999999999985 579999999999999999998 5799999995
No 26
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.3e-42 Score=348.66 Aligned_cols=238 Identities=43% Similarity=0.701 Sum_probs=206.1
Q ss_pred ccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCchhhHHHHHHHHHHHHHhcCCCcccchhHHhhhhhcccc
Q 005687 109 GLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSPRKLVDNLNYISSF 188 (683)
Q Consensus 109 GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~ll~~L~~l~~~~~~ss~~~i~P~~fl~~L~~~~~~ 188 (683)
||.|.|||||+||+||+|++
T Consensus 1 Gl~N~~n~Cy~ns~lq~l~~------------------------------------------------------------ 20 (255)
T cd02257 1 GLNNLGNTCYLNSVLQALFS------------------------------------------------------------ 20 (255)
T ss_pred CccccCcchHHhHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999998
Q ss_pred ccccccccHHHHHHHHHHHHHHhhccCCCCccccccCCCccceeecceEEEEEEEecCCCCcccccccceeeeeeecc--
Q 005687 189 FQRYQQEDAHEFLQCLLDRLESCCLDSKTKDESLSSQGDNIVQRVFGGCLISKLQCCNCGSCSDTYEPLIDLSLEIED-- 266 (683)
Q Consensus 189 f~~~~QQDA~Efl~~LLd~L~~e~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C~~Cg~~S~~~E~F~~LsL~I~~-- 266 (683)
.||||+|||..||+.|+.++...... ........+.+.++|.|.+...+.|..|+..+.....+..+.|+++.
T Consensus 21 ----~q~Da~E~l~~ll~~l~~~~~~~~~~-~~~~~~~~~~i~~~F~~~~~~~~~c~~c~~~~~~~~~~~~l~l~~~~~~ 95 (255)
T cd02257 21 ----EQQDAHEFLLFLLDKLHEELKKSSKR-TSDSSSLKSLIHDLFGGKLESTIVCLECGHESVSTEPELFLSLPLPVKG 95 (255)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHhhccc-ccccccCCchhhhhcccEEeeEEECCCCCCCccCcccceeEEeeccCCC
Confidence 89999999999999999887652211 11123445789999999999999999999887777777777777774
Q ss_pred --cCChHHHHHhhhhhccccCCCCcccccccC--ccceeeeeeeeecCCceeEEEEeeeeecC-ceeeeecceeecCccc
Q 005687 267 --VGSLGSALESFTKLEKIEDPETKFTCEKCK--EQVSVEKQLMLDKVPSVAAFHLKRFKTDG-SYVVKIDKHVEFPLEL 341 (683)
Q Consensus 267 --~~sL~~~L~~~~~~E~ie~~dn~y~C~~C~--~~~~a~K~~~I~~LP~vLiIhLkRF~~d~-~~~~Ki~~~V~FP~~L 341 (683)
..+|+++|+.++..+.+.+ +.|..|+ +...+.++..|.++|++|+|+++||.++. ....|+...|.||.+|
T Consensus 96 ~~~~~l~~~l~~~~~~e~~~~----~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~k~~~~v~~~~~l 171 (255)
T cd02257 96 LPQVSLEDCLEKFFKEEILEG----DNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNEDGTKEKLNTKVSFPLEL 171 (255)
T ss_pred CCCCcHHHHHHHhhhhhccCC----CCcccCCCCcccceeEEEecccCCceeEEEeeceeeccccccccCCCeEeCCCcc
Confidence 4799999999999998876 7899998 68888999999999999999999999887 6677999999999999
Q ss_pred cccccccC----CCCCCcceeEEEeEEEEeecCCCCCCcEEEEEEcCC-CeEEEEeCCcceEeccccc-----cCCCeEE
Q 005687 342 DLKPYTSG----GQNSDVELKYHLYAIVEHMGSSPTCGHYFSYIRSSP-DTWHRLNDSRVTRVEEEFV-----LSQDAYI 411 (683)
Q Consensus 342 DLs~y~~~----~~~~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr~~~-~~Wy~fNDs~Vs~vs~eeV-----~s~~AYi 411 (683)
++..++.. .........|+|+|||+|.|.+.++|||+||+|... ++||+|||..|++++++++ ....|||
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~~~~~~~~~~~~yl 251 (255)
T cd02257 172 DLSPYLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVLEFGSLSSSAYI 251 (255)
T ss_pred cCccccccccccccccCCCccEEEEEEEEEecCCCCCcCeEEEEeCCCCCceEEEeccccEEcCHHHhhhccCCCCceEE
Confidence 99988753 223345679999999999998779999999999975 8999999999999999998 4689999
Q ss_pred EEEE
Q 005687 412 LFYA 415 (683)
Q Consensus 412 LfY~ 415 (683)
|||+
T Consensus 252 l~Y~ 255 (255)
T cd02257 252 LFYE 255 (255)
T ss_pred EEEC
Confidence 9995
No 27
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-43 Score=373.72 Aligned_cols=381 Identities=23% Similarity=0.300 Sum_probs=302.6
Q ss_pred hhhhhcceeeEeeecCCCCCChhhhhhccCCCCCCcccccCC--------CCCCCCCchhHHHhhhcCCCCcc--CCCCC
Q 005687 13 TDLVFAREIVDEKTLDPSWSSPETLHDHLHPSNHPLTLTDLD--------KDQNNDDDDDYEEIYRDTRPISS--SYGRY 82 (683)
Q Consensus 13 ~~~~~~~~i~~ev~ld~~~~~~~~~k~~l~~~~~~~slt~v~--------~~~~~~dd~d~~~i~~~~k~~~~--~~g~~ 82 (683)
.+++|-.++..-.+|+++ ++|.+||+||+ +||||+ |||.++||.+|..| ..||+.. |||+.
T Consensus 6 v~VKW~gk~y~v~~l~~d-~t~~vlKaqlf------~LTgV~PeRQKv~vKGg~a~dd~~~~al--~iKpn~~lmMmGt~ 76 (473)
T KOG1872|consen 6 VIVKWGGKKYPVETLSTD-ETPSVLKAQLF------ALTGVPPERQKVMVKGGLAKDDVDWGAL--QIKPNETLMMMGTA 76 (473)
T ss_pred EeeeecCccccceeccCC-CchHHHHHHHH------HhcCCCccceeEEEeccccccccccccc--ccCCCCEEEeeccc
Confidence 678899999999899999 99999999999 999999 79999999988877 6799888 55655
Q ss_pred CCCCCCCCCCccCCCCcccCC-------CCCCCccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCCCCC-CCchhhH
Q 005687 83 NWGSSLLSRPVEKHWPIQIKP-------TGVGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDG-ATEGFCV 154 (683)
Q Consensus 83 ~~~~~~l~~p~~~~~~~e~~p-------~~~p~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~-~~~~~~l 154 (683)
.. .+..|.....++++.+ -.+|+||.|+|||||||+.+|||..+|+++..+..+......+. ......+
T Consensus 77 e~---~~e~p~~~~~~~ed~~e~~~~~~~~lp~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t~~~a~~i 153 (473)
T KOG1872|consen 77 EA---GLEPPSLPPTFIEDSAEQFASAALPLPVGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDTWERRRRI 153 (473)
T ss_pred cc---cccCcccCCcchhhhhHHHHHhhccCCccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCCchhhhhhhH
Confidence 43 3445555566666552 56789999999999999999999999999988876653322211 1113456
Q ss_pred HHHHHHHHHHHHhcCCCcccchhHHhhhhhccccccc------cccccHHHHHHHHHHHHHHhhccCCCCccccccCCCc
Q 005687 155 ICALRDHIELSLASSGKVLSPRKLVDNLNYISSFFQR------YQQEDAHEFLQCLLDRLESCCLDSKTKDESLSSQGDN 228 (683)
Q Consensus 155 l~~L~~l~~~~~~ss~~~i~P~~fl~~L~~~~~~f~~------~~QQDA~Efl~~LLd~L~~e~~~~~~~~~~~~~~~~s 228 (683)
..+++.+|..+..+ ..+.|..+++.|...+|+|.. +.||||.|++..++-.+++.+...... .....
T Consensus 154 ~~~mR~~f~~~~~~--~~v~pi~llqtl~~~~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~~-----~~~~~ 226 (473)
T KOG1872|consen 154 SIETRTCFRPLCEK--GAVAPINLLQTLSSQYPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATEA-----PCLEA 226 (473)
T ss_pred HHHHHHHHHhhhcc--CCcchHHHHHHHHHHhHHHHHHhhhhhHHHHHHhHhHHHhhhheeccccccccc-----cchhH
Confidence 77889999866654 899999999999999999966 999999999999999998765442221 14556
Q ss_pred cceeecceEEEEEEEecCCCCcccc--cccceeeeeeec-ccCChHHHHHhhhhhccccCCCCcccccccCccceeeeee
Q 005687 229 IVQRVFGGCLISKLQCCNCGSCSDT--YEPLIDLSLEIE-DVGSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQL 305 (683)
Q Consensus 229 ~I~~lF~G~l~s~i~C~~Cg~~S~~--~E~F~~LsL~I~-~~~sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K~~ 305 (683)
+++.+|++.+..+..|.+-...... .|.|..|.+.|. ....+...|..-++++ |+. .-+.-|......|..
T Consensus 227 ~~d~~f~~~~~~t~~~~e~e~~~~~~~~E~~~~L~c~i~~~~~~~k~Gl~~~~~e~-~~K-----~s~~lgr~a~y~k~~ 300 (473)
T KOG1872|consen 227 EAAAGFGAEFSTTMSCSEGEDEGGGAGRELVDQLKCIINKTVHDMRFGLKSGLSEE-IQK-----ISSILGRPAAYQKVM 300 (473)
T ss_pred HHHHhhccccccceeeccCcccccccccccccccceEEeeeechhhhhhhhhhhhh-hhc-----cCcccCCChHHHHHh
Confidence 8899999999999999886654433 788999999886 4456677776666533 221 223334444556888
Q ss_pred eeecCCceeEEEEeeeeecCc--eeeeecceeecCccccccccccCCCC-------------------------------
Q 005687 306 MLDKVPSVAAFHLKRFKTDGS--YVVKIDKHVEFPLELDLKPYTSGGQN------------------------------- 352 (683)
Q Consensus 306 ~I~~LP~vLiIhLkRF~~d~~--~~~Ki~~~V~FP~~LDLs~y~~~~~~------------------------------- 352 (683)
.|.+||.+|+|++.||.|... ...||.+.|.||..||...+|..+..
T Consensus 301 ~isrlP~ylTvq~vrf~~k~k~~~~akil~~V~fP~~ld~~d~ct~el~~k~~~~r~k~r~~edkk~~~~~~~k~~~~~~ 380 (473)
T KOG1872|consen 301 YISRLPEYLTVQEVRFFSKAKIMVVAKILNAVNFPKDLDQQDLCTPELKKKLLCRRKKHRKVEDKKKEEDVMPKVKGAQE 380 (473)
T ss_pred HhhcCcccceEEEEEEEeccccchHHHHHHhccChhhhhHHHhhCHHhhcCccchHHHHHHHHhcCCchhhcccccCcCc
Confidence 999999999999999988754 34699999999999999988854321
Q ss_pred -----------------CCcceeEEEeEEEEeecCCCCCCcEEEEEEcCCCeEEEEeCCcceEeccccccC-------CC
Q 005687 353 -----------------SDVELKYHLYAIVEHMGSSPTCGHYFSYIRSSPDTWHRLNDSRVTRVEEEFVLS-------QD 408 (683)
Q Consensus 353 -----------------~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr~~~~~Wy~fNDs~Vs~vs~eeV~s-------~~ 408 (683)
......|+|.|||.|.|.+..+|||++|+|...++|++|||+.|+-+..+.+.+ +.
T Consensus 381 ~~~~~~~e~~~~~~~~~s~~~g~y~l~~vithkgrss~sghy~aw~r~s~~~w~~fdd~~vs~v~~e~i~~lsgggd~~~ 460 (473)
T KOG1872|consen 381 RLKEVPLEGMYNKSGGKSRNSGLYDLQLVITHKGRSSKSGHYVAWNRVSEDKWGHFDDDMVSFVLGETILSLSGGGDWHS 460 (473)
T ss_pred ccccccccchhccccccccccceeeeeEeeeccccccCCCcceEEEeccCCceeeccccccccccccceeeecCCCccch
Confidence 022468999999999999999999999999998999999999999999999874 68
Q ss_pred eEEEEEEEcC
Q 005687 409 AYILFYAKQG 418 (683)
Q Consensus 409 AYiLfY~R~~ 418 (683)
||||+|.-+.
T Consensus 461 ayvllyk~~~ 470 (473)
T KOG1872|consen 461 AYVLLYKARV 470 (473)
T ss_pred hhheeecccc
Confidence 9999998653
No 28
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-42 Score=375.47 Aligned_cols=271 Identities=24% Similarity=0.466 Sum_probs=232.8
Q ss_pred CCccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCchhhHHHHHHHHHHHHHhcCCCcccchhHHhhhhhcc
Q 005687 107 GAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSPRKLVDNLNYIS 186 (683)
Q Consensus 107 p~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~ll~~L~~l~~~~~~ss~~~i~P~~fl~~L~~~~ 186 (683)
.+||.|..-|||||+.+|+|+..|+|++.+... ....+....|.+.++|..
T Consensus 87 yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts-----------------------------~~~~~et~dlt~sfgw~s 137 (1203)
T KOG4598|consen 87 YVGLVNQASNDLLFEQSCAISLHDSGISKCYTS-----------------------------ENDSLETKDLTQSFGWTS 137 (1203)
T ss_pred eEeehhhHHHHHHHHHhhhhccChhhhhhhhCC-----------------------------CcccccchhhHhhcCCCc
Confidence 499999999999999999999999999877521 122334455556666554
Q ss_pred ccccccccccHHHHHHHHHHHHHHhhccCCCCccccccCCCccceeecceEEEEEEEecCCCCcccccccceeeeeeecc
Q 005687 187 SFFQRYQQEDAHEFLQCLLDRLESCCLDSKTKDESLSSQGDNIVQRVFGGCLISKLQCCNCGSCSDTYEPLIDLSLEIED 266 (683)
Q Consensus 187 ~~f~~~~QQDA~Efl~~LLd~L~~e~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C~~Cg~~S~~~E~F~~LsL~I~~ 266 (683)
. ..|+|||.||+.+.++|+|+..++. +....+|.+++.|++...+.|.+|+.++.+.+.|++|.|++..
T Consensus 138 ~--ea~~qhdiqelcr~mfdalehk~k~---------t~~~~li~~ly~g~m~d~v~cl~c~~e~~~~d~fld~pl~v~p 206 (1203)
T KOG4598|consen 138 N--EAYDQHDVQELCRLMFDALEHKWKG---------TEHEKLIQDLYRGTMEDFVACLKCGRESVKTDYFLDLPLAVKP 206 (1203)
T ss_pred c--hhhhhhhHHHHHHHHHHHHHhhhcC---------chHHHHHHHHhcchHHHHHHHHHcCccccccceeecccccccC
Confidence 3 5799999999999999999987655 3445799999999999999999999999999999999999975
Q ss_pred c------CChHHHHHhhhhhccccCCCCcccccccCccceeeeeeeeecCCceeEEEEeeeeecCce--eeeecceeecC
Q 005687 267 V------GSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTDGSY--VVKIDKHVEFP 338 (683)
Q Consensus 267 ~------~sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K~~~I~~LP~vLiIhLkRF~~d~~~--~~Ki~~~V~FP 338 (683)
. .+++++|..|..+|.++ |+|+|.|++|+++++|-|.+.|+.+|-+|+||||||.|+.+. ..|++++++||
T Consensus 207 fg~~~ay~sieeal~afvqpe~ld-g~nqy~ce~ck~k~dahkgl~~~~fpy~lt~~lkrfdfdy~tmhriklnd~~tfp 285 (1203)
T KOG4598|consen 207 FGAIHAYKSVEEALTAFVQPELLD-GSNQYMCENCKSKQDAHKGLRITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMTFP 285 (1203)
T ss_pred CcchhhhhhHHHHHHHhcChhhcC-CccHHHHhhhhhhhhhhcCceeeccceeeEEeeecccccchheeeeeecccccCc
Confidence 4 48999999999999995 589999999999999999999999999999999999888664 46999999999
Q ss_pred ccccccccccCCCC----------------------------------------------------------------CC
Q 005687 339 LELDLKPYTSGGQN----------------------------------------------------------------SD 354 (683)
Q Consensus 339 ~~LDLs~y~~~~~~----------------------------------------------------------------~~ 354 (683)
..|||..|+..+.. ..
T Consensus 286 ~~l~ln~~in~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~n~~~g~~~~~~~~~~~~~~s 365 (1203)
T KOG4598|consen 286 DVLDLNDYVNKEKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKRCTPGVQSPNRYQGSENVCVGQPIDHAAVDDIVKTS 365 (1203)
T ss_pred ccccHHHhhhhccCCcchhHhhhcccccccccccccccCCCCcccCcccccCcccccCccccccCCcCchhhhhhHhhcC
Confidence 99999999843221 02
Q ss_pred cceeEEEeEEEEeecCCCCCCcEEEEEEcC-CCeEEEEeCCcceEecccccc-------------CCCeEEEEEEEcCC
Q 005687 355 VELKYHLYAIVEHMGSSPTCGHYFSYIRSS-PDTWHRLNDSRVTRVEEEFVL-------------SQDAYILFYAKQGT 419 (683)
Q Consensus 355 ~~~~YeL~AVV~H~G~s~~sGHY~ayvr~~-~~~Wy~fNDs~Vs~vs~eeV~-------------s~~AYiLfY~R~~~ 419 (683)
.+..|+|++|.+|.|. +.+|||+||||+. +++||.|||.+|+-++.++|. +.+||||+|+|.+.
T Consensus 366 g~~~yelf~imihsg~-a~gghy~ayik~~d~~~w~~fnd~~v~~~t~~~i~~sfgg~~~~~~~s~tnaymlmyr~id~ 443 (1203)
T KOG4598|consen 366 GDNVYELFSVMVHSGN-AAGGHYFAYIKNLDQDRWYVFNDTRVDFATPLEIEKSFGGHPSGWNQSNTNAYMLMYRRIDP 443 (1203)
T ss_pred CccHHHhhhhheecCC-CCCceeeeeecccCcCceEEecCccccccCHHHHHHhhCCCCCCccccCcchhhhhhhhcCc
Confidence 3468999999999995 8889999999985 679999999999999998886 25899999999864
No 29
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.8e-42 Score=377.23 Aligned_cols=308 Identities=32% Similarity=0.533 Sum_probs=240.2
Q ss_pred CCCccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCC-------CCC--------CCCchhhHHHHHHHHHHHHHhcCC
Q 005687 106 VGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPR-------PCD--------GATEGFCVICALRDHIELSLASSG 170 (683)
Q Consensus 106 ~p~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~-------~~~--------~~~~~~~ll~~L~~l~~~~~~ss~ 170 (683)
.-+||.|+|||||+|||+|+|..+|.|++.|....... +.. .......++.+|..+. .|.....
T Consensus 204 ~VrGL~NLGNTCFFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~~~-e~~e~~k 282 (877)
T KOG1873|consen 204 IVRGLTNLGNTCFFNAVMQNLAQTPALRDVLKEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALANLL-EMSETTK 282 (877)
T ss_pred cccccccccchhhHHHHHHHHhhcHHHHHHHHhhccCCceeEecCccccchhhHHHhccCCcchhHHHHhhh-hhhhccC
Confidence 34799999999999999999999999999998754331 000 0111123455665544 3666677
Q ss_pred CcccchhHHhhhhhccccccccccccHHHHHHHHHHHHHHhhccC-------CCCcc-----------------ccccCC
Q 005687 171 KVLSPRKLVDNLNYISSFFQRYQQEDAHEFLQCLLDRLESCCLDS-------KTKDE-----------------SLSSQG 226 (683)
Q Consensus 171 ~~i~P~~fl~~L~~~~~~f~~~~QQDA~Efl~~LLd~L~~e~~~~-------~~~~~-----------------~~~~~~ 226 (683)
.+++|..|...+....++|.+|+||||||+|++|||.|..+-... ....+ ......
T Consensus 283 sv~~Pr~lF~~~C~k~pqF~g~~QhDsHELLR~LLD~l~~EE~~~~kk~Il~~fG~~t~~l~scle~~q~sKvYe~f~~~ 362 (877)
T KOG1873|consen 283 SVITPRTLFGQFCSKAPQFRGYDQHDSHELLRCLLDSLRSEESRRRKKNILSNFGGETSSLVSCLECGQKSKVYEPFKDL 362 (877)
T ss_pred CccCHHHHHHHHHHhCCcccccccccHHHHHHHHHHhhhHHHHHHHHHhHHHhhCccccchhhhhhccchhhcccccccC
Confidence 899999999999999999999999999999999999986542110 00000 001123
Q ss_pred CccceeecceEEEEEEEecCCCCcccccccceeeeeee------------------------------------------
Q 005687 227 DNIVQRVFGGCLISKLQCCNCGSCSDTYEPLIDLSLEI------------------------------------------ 264 (683)
Q Consensus 227 ~s~I~~lF~G~l~s~i~C~~Cg~~S~~~E~F~~LsL~I------------------------------------------ 264 (683)
..++..+|.|-+.+.+.|..|. ++...+.|.+.+++|
T Consensus 363 ~~~vp~~~~~~~~s~~~~~~~~-vss~~~s~~~~t~pv~~~~~~~qs~~~s~~~~~tsd~sd~spst~~~t~n~~~~e~~ 441 (877)
T KOG1873|consen 363 SLPVPLSFNGPLTSQIECQACD-VSSVHESFLSETLPVLPSQSLSQSSDSSQHLHLTSDSSDTSPSTEAPTKNLPSSELL 441 (877)
T ss_pred CcccccccCCCcccchhhhccc-eeccchhhcccccccccCccccccCCCcccceeccccccCCccccCcccCccccccc
Confidence 3455678888888888888888 566677787777777
Q ss_pred --------------------------------------------------------------------------------
Q 005687 265 -------------------------------------------------------------------------------- 264 (683)
Q Consensus 265 -------------------------------------------------------------------------------- 264 (683)
T Consensus 442 ~~~t~dn~~~~k~qS~~~~~~S~~~~~~~k~~a~s~n~n~~~~g~~~~~a~~v~~~~~~~~p~gD~e~s~Ad~~lde~n~ 521 (877)
T KOG1873|consen 442 DSLTDDNDQVFKGQSDVAGTNSKEDQNKAKNQAKSQNLNEASQGKDNEKALQVNDRQLDILPLGDGELSKADMSLDEANM 521 (877)
T ss_pred ccccccCchhhccccccccCccccccchhhhhhhhhccccccccccchhhhhhchhhccccccCcccccccccccccccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 005687 265 -------------------------------------------------------------------------------- 264 (683)
Q Consensus 265 -------------------------------------------------------------------------------- 264 (683)
T Consensus 522 ~~~sss~~~~~~~~~~~s~v~~~s~~ed~n~~~~~~~~~~~a~~Ss~~~d~~~~~~~v~~S~~s~sp~~se~~~vs~n~~ 601 (877)
T KOG1873|consen 522 DEFSSSLEKGIFRGRSTSEVSQASCNEDCNDPEPIQDGSGEASSSSSSVDREHNNHRVARSRFSRSPKKSEVKIVSGNDK 601 (877)
T ss_pred cccccccCCcccCCccHHHhhhhhhhcccCCcccccCCCCcccCCCcccccccccchhhhhhhcCCCcccceeeeccccc
Confidence
Q ss_pred -------------------------------------------------------------------------cccCChH
Q 005687 265 -------------------------------------------------------------------------EDVGSLG 271 (683)
Q Consensus 265 -------------------------------------------------------------------------~~~~sL~ 271 (683)
....+++
T Consensus 602 ~~g~~g~~~~Sssf~~g~~~g~~~d~d~~~~e~~~~~~T~~~~~~g~~s~~kvs~~~f~a~~S~s~~~~~~~~D~p~Svq 681 (877)
T KOG1873|consen 602 TVGDQGETENSSSFNEGDLNGHASDNDEFLIEIPDDKLTRELPVFGPPSKAKVSEQGFDAFSSISDPEVLDSSDEPCSVQ 681 (877)
T ss_pred cccccceeeechhhhccCccccccchHHhhhcCcccCCCccccccCCCccceeccCCccccccccChhhccCCCCCccHH
Confidence 0123678
Q ss_pred HHHHhhhhhccccCCCCcccccccCcc---------------------------ceeeeeeeeecCCceeEEEEeeeeec
Q 005687 272 SALESFTKLEKIEDPETKFTCEKCKEQ---------------------------VSVEKQLMLDKVPSVAAFHLKRFKTD 324 (683)
Q Consensus 272 ~~L~~~~~~E~ie~~dn~y~C~~C~~~---------------------------~~a~K~~~I~~LP~vLiIhLkRF~~d 324 (683)
.||.+|++.|.+.+ +|+|.|++|-+. ..|.|++.|..+|+||+|||+||..+
T Consensus 682 ~CL~nFT~~E~Ls~-~N~~~CEnCtk~~n~~~r~k~~~n~~~sk~s~~es~~~~t~akk~~li~~aPpVltihlKrf~q~ 760 (877)
T KOG1873|consen 682 RCLKNFTKVEILSG-DNKWACENCTKNLNLQRREKRGLNEDNSKYSFNESEYRNTYAKKKVLINKAPPVLTIHLKRFFQD 760 (877)
T ss_pred HHHHhhhhhhhccc-ccchhhhhhhccccccchhhccCCCCcccccccchhhhhhhhheeeecccCCceeeehHhhhhhh
Confidence 99999999999975 899999999651 12567888999999999999999776
Q ss_pred Cc-eeeeecceeecCccccccccccCC---CCCCcceeEEEeEEEEeecCCCCCCcEEEEEEc-----------------
Q 005687 325 GS-YVVKIDKHVEFPLELDLKPYTSGG---QNSDVELKYHLYAIVEHMGSSPTCGHYFSYIRS----------------- 383 (683)
Q Consensus 325 ~~-~~~Ki~~~V~FP~~LDLs~y~~~~---~~~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr~----------------- 383 (683)
.. ...|.+..+.|++.+||.+|+... .+......|+|+|||.|.|. +..|||++|+|.
T Consensus 761 ~~~~~~k~~~h~~f~E~~dL~~~~~~rc~~l~~~~s~~Yrl~gvvehsgt-m~~ghyvayv~~~t~~~~~~~~~~~~~~s 839 (877)
T KOG1873|consen 761 IRGRLSKLNKHVDFKEFEDLLDYMDFRCSHLDEPSSFVYRLAGVVEHSGT-MSYGHYVAYVRGGTFLDLSAPSNSKDFES 839 (877)
T ss_pred hhchhhcccccchHHHHHHHHHHhhhhccccCCcchhhhhhccceecccc-ccCCcchhhhhccchhhccCccccccchh
Confidence 54 478999999999999999998642 22334679999999999996 999999999972
Q ss_pred ----CCCeEEEEeCCcceEeccccccCCCeEEEEEEEc
Q 005687 384 ----SPDTWHRLNDSRVTRVEEEFVLSQDAYILFYAKQ 417 (683)
Q Consensus 384 ----~~~~Wy~fNDs~Vs~vs~eeV~s~~AYiLfY~R~ 417 (683)
+.++||...|++|.+|++++|+..+||||||+|.
T Consensus 840 d~~~~~~~Wy~iSDs~VrevS~d~vLkseAYlLFYERI 877 (877)
T KOG1873|consen 840 DAGIPSGRWYYISDSIVREVSLDEVLKSEAYLLFYERI 877 (877)
T ss_pred ccCCCCcceEEecchheecccHHHHhhhhhhhhheecC
Confidence 2479999999999999999999999999999984
No 30
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-40 Score=402.63 Aligned_cols=324 Identities=29% Similarity=0.449 Sum_probs=272.5
Q ss_pred CCCCCCccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCchhhHHHHHHHHHHHHHhcCCCcccchhHHhhh
Q 005687 103 PTGVGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSPRKLVDNL 182 (683)
Q Consensus 103 p~~~p~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~ll~~L~~l~~~~~~ss~~~i~P~~fl~~L 182 (683)
.++.|+||.|+||||||||+||+||.++.||+.+..+.... ........++.+|+.+|..+..+..+++++..|...+
T Consensus 166 ~tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~~~--~~~~~~~~v~~~lq~lF~~LQ~s~~k~Vdt~~~~~~~ 243 (1093)
T KOG1863|consen 166 LTGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPPFT--GHEDPRRSIPLALQRLFYELQMSKRKYVDTSELTKSL 243 (1093)
T ss_pred cCCCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCCCC--CcccccchHHHHHHHHHHHHhhcCCCCcCchhhhhhh
Confidence 36778999999999999999999999999999999886422 1233334478899999998887788899999999999
Q ss_pred hhccccccccccccHHHHHHHHHHHHHHhhccCCCCccccccCCCccceeecceEEEEEEEecCCCCcccccccceeeee
Q 005687 183 NYISSFFQRYQQEDAHEFLQCLLDRLESCCLDSKTKDESLSSQGDNIVQRVFGGCLISKLQCCNCGSCSDTYEPLIDLSL 262 (683)
Q Consensus 183 ~~~~~~f~~~~QQDA~Efl~~LLd~L~~e~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C~~Cg~~S~~~E~F~~LsL 262 (683)
.+.. ...++|||++||++.|+|+|++.+.... ....|.++|.|.+.+.+.|..|+..+.+.|.|+++.|
T Consensus 244 ~~~~--~~~~~QqDvqEf~~~l~d~LE~~~~~~~---------~~~~l~~lf~g~~~~~i~c~~~~~~s~r~e~f~d~ql 312 (1093)
T KOG1863|consen 244 GWDS--NDSFEQQDVQEFLTKLLDWLEDSMIDAK---------VENTLQDLFTGKMKSVIKCIDVDFESSRSESFLDLQL 312 (1093)
T ss_pred hccc--ccHHhhhhHHHHHHHHHHHHHhhccchh---------hhhhhhhhhcCCcceEEEEEeeeeeccccccccCccc
Confidence 9876 5678999999999999999998876632 3568999999999999999999999999999999999
Q ss_pred eecccCChHHHHHhhhhhccccCCCCcccccccCccceeeeeeeeecCCceeEEEEeeeeec--CceeeeecceeecCcc
Q 005687 263 EIEDVGSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTD--GSYVVKIDKHVEFPLE 340 (683)
Q Consensus 263 ~I~~~~sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K~~~I~~LP~vLiIhLkRF~~d--~~~~~Ki~~~V~FP~~ 340 (683)
.+.+..+|.++|..|+..|.+++ +++ .|..|...+.|.+..++..||++|.|+|+||.++ .+...|+++.+.||..
T Consensus 313 ~~~g~~nl~~sf~~y~~~E~l~g-dn~-~~~~~~~~~~a~k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~Ki~d~~~fp~~ 390 (1093)
T KOG1863|consen 313 NGKGVKNLEDSLHLYFEAEILLG-DNK-YDAECHGLQDAKKGVLFDSLPPVLFIQLMRFEYDFSTGQKIKINDKFEFPLI 390 (1093)
T ss_pred cccchhhHHHHHHHhhhHHHhcC-Ccc-ccccccchhhhhcceeeccCCchhhhhhhheeeeccCCceeehhhccCCccc
Confidence 99999999999999999998865 777 7999999999999999999999999999999997 5567899999999999
Q ss_pred ccccccccC--CCCCCcceeEEEeEEEEeecCCCCCCcEEEEEEcC-CCeEEEEeCCcceEeccccccC-----------
Q 005687 341 LDLKPYTSG--GQNSDVELKYHLYAIVEHMGSSPTCGHYFSYIRSS-PDTWHRLNDSRVTRVEEEFVLS----------- 406 (683)
Q Consensus 341 LDLs~y~~~--~~~~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr~~-~~~Wy~fNDs~Vs~vs~eeV~s----------- 406 (683)
|+|.+|+.. .........|.|+||++|.| ..++|||++|++.. .++|++|||..|+.++..+++.
T Consensus 391 i~~d~~~~~~~~~~~~~~~~y~l~~v~vh~g-~~~~ghy~~~i~~~~~~~w~kfdd~~v~~~~~~~~l~~~~g~~~~~~~ 469 (1093)
T KOG1863|consen 391 IDMDRYLSRFKAEESERSAVYSLHAVLVHSG-DAHSGHYVAYINPKLDGKWVKFDDLVVTVVSEKEALEQNYGTEEIELS 469 (1093)
T ss_pred cccchhccccchhhhhccceeccchhhcccc-cccCccceeeecchhhccceeccCceeeeccHHHHHHhhCCCcchhhh
Confidence 999999874 22222235999999999977 59999999999954 7899999999999999877652
Q ss_pred -----CCeEEEEEEEcCCcccchhhhhhhccCCCCCCCCCchhHHHhhhh
Q 005687 407 -----QDAYILFYAKQGTEWVSSLLEAESIGMNADISNSSPKSVLDNVEN 451 (683)
Q Consensus 407 -----~~AYiLfY~R~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 451 (683)
..||+|+|.|.+.. .....+..+.++|.++.+....
T Consensus 470 ~~~~~~~~~~lv~~~~s~~---------~~~~~~v~e~~i~~~l~~~~~~ 510 (1093)
T KOG1863|consen 470 STADFKNAYMLVYIRDSCE---------SKILKDISESSIPYHLSETLQK 510 (1093)
T ss_pred cccccCCcceEEEEecCcH---------HhhhcccchhhccHHHHHHhhh
Confidence 12899999998652 1122224445566666665553
No 31
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-40 Score=392.08 Aligned_cols=306 Identities=32% Similarity=0.540 Sum_probs=260.7
Q ss_pred CCccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCCC---CCCCchhhHHHHHHHHHHHHHhcCCCcccchhHHhhhh
Q 005687 107 GAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPC---DGATEGFCVICALRDHIELSLASSGKVLSPRKLVDNLN 183 (683)
Q Consensus 107 p~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~---~~~~~~~~ll~~L~~l~~~~~~ss~~~i~P~~fl~~L~ 183 (683)
.+||.|+|||||||+.+|||.+.++++++++........ +.......+...+..++..++......+.|..+...+.
T Consensus 246 ~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~~~~v~~~~~~~~~~ 325 (842)
T KOG1870|consen 246 ETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSGNKSAVAPTSFRTSLA 325 (842)
T ss_pred ccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccCCccccCchhhhhhhh
Confidence 389999999999999999999999999998765333211 11112223344556666656655555899999999999
Q ss_pred hccccccccccccHHHHHHHHHHHHHHhhccCCCCc--------------------cccccCCCccceeecceEEEEEEE
Q 005687 184 YISSFFQRYQQEDAHEFLQCLLDRLESCCLDSKTKD--------------------ESLSSQGDNIVQRVFGGCLISKLQ 243 (683)
Q Consensus 184 ~~~~~f~~~~QQDA~Efl~~LLd~L~~e~~~~~~~~--------------------~~~~~~~~s~I~~lF~G~l~s~i~ 243 (683)
...+.|.++.|||.+||+.+|+|.||+.+....... ......+.++|.++|.|.+.+.+.
T Consensus 326 ~~a~~~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~~~~~~~~~~~s~i~d~~~~~~~S~~~ 405 (842)
T KOG1870|consen 326 SFASEFSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAEVWDYHLKRNRSVIVDLFDGTYKSTLQ 405 (842)
T ss_pred hccccccCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHHHHHhhhhhccceeeeeecceeccccc
Confidence 999999999999999999999999999876543330 012235678999999999999999
Q ss_pred ecCCCCcccccccceeeeeee-----------------------------------------------------------
Q 005687 244 CCNCGSCSDTYEPLIDLSLEI----------------------------------------------------------- 264 (683)
Q Consensus 244 C~~Cg~~S~~~E~F~~LsL~I----------------------------------------------------------- 264 (683)
|..|+.++.++++|.+|+|++
T Consensus 406 c~~C~~~svt~d~f~~Lslp~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~i~~ 485 (842)
T KOG1870|consen 406 CPTCGKVSVTFDPFGYLSLPLPGKEIQKLEVTVPHGDGFRKPGALGVSVAKNGRIRDLLEYLSRTVGLLSWELKPVEILF 485 (842)
T ss_pred CccCCCceEEeeccccccccCCCCcccceeEEEecCCCCCChhheeeeccccchHHHHHHHHHHHhccchhhcccceecc
Confidence 999999999999999999977
Q ss_pred --------------------------------------------------------------------------------
Q 005687 265 -------------------------------------------------------------------------------- 264 (683)
Q Consensus 265 -------------------------------------------------------------------------------- 264 (683)
T Consensus 486 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~t~ 565 (842)
T KOG1870|consen 486 DCFNKIFAADELKLDSIYSDEELFDYELGVLKVQGSIYAIIVVRFRSRLPRSKGIRSHVSSKLFGLPLLVSVLSGAQSTE 565 (842)
T ss_pred chhhhhhccCccccccccCCcceEEeecccccccccceEEEEEeeccccccccCcccCCCccccCCcceeeccCCCcccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 005687 265 -------------------------------------------------------------------------------- 264 (683)
Q Consensus 265 -------------------------------------------------------------------------------- 264 (683)
T Consensus 566 ~~l~~~~~~~~s~~~~~~~~~v~~~~~~~~~~~~~e~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (842)
T KOG1870|consen 566 EDLLSVICHRTSRYSREPPLNVGYGVDDQSLKEVSEQSAESSSSVSRDPSEDDNSDQDLSLECLSEESALRFFQSLESRN 645 (842)
T ss_pred cchhhHHhhcccccCCcCccccccCCCcccccccccccccccccccCCChhHhccccccchhhccCcccccccccccccc
Confidence
Q ss_pred -----------------------------------------------cccCChHHHHHhhhhhccccCCCCcccccccCc
Q 005687 265 -----------------------------------------------EDVGSLGSALESFTKLEKIEDPETKFTCEKCKE 297 (683)
Q Consensus 265 -----------------------------------------------~~~~sL~~~L~~~~~~E~ie~~dn~y~C~~C~~ 297 (683)
+...+|++||+.|+..|.|. .++.|.|++|++
T Consensus 646 ~~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cl~~F~~~E~L~-~~~~w~C~~Cke 724 (842)
T KOG1870|consen 646 KSDSEFEPGSTSIAVDWSPSAKYKYSSSLVSQPPEVEPRGASRSKGSPAPNSLESCLELFSEPETLG-KDDRWYCPQCKE 724 (842)
T ss_pred cccccccCCCceeecccChhhccccccccccccccccccccccccCCCCcccHHHHHHhhcchhcCC-ccccccChHHHH
Confidence 01225788899999999885 578999999999
Q ss_pred cceeeeeeeeecCCceeEEEEeeeeecCceeeeecceeecCc-cccccccccCCCCCCcceeEEEeEEEEeecCCCCCCc
Q 005687 298 QVSVEKQLMLDKVPSVAAFHLKRFKTDGSYVVKIDKHVEFPL-ELDLKPYTSGGQNSDVELKYHLYAIVEHMGSSPTCGH 376 (683)
Q Consensus 298 ~~~a~K~~~I~~LP~vLiIhLkRF~~d~~~~~Ki~~~V~FP~-~LDLs~y~~~~~~~~~~~~YeL~AVV~H~G~s~~sGH 376 (683)
++.|.|+..+++||+||+||||||.+.+....|+...|+||. .||+++|+...+. ..|+|+||++|+|. +.+||
T Consensus 725 ~~~A~Kk~~lwrlPeiLiihLKrF~~~r~~~~k~~~~v~fPi~~ld~s~~~~~~~~----~~Y~l~av~nHyG~-l~~GH 799 (842)
T KOG1870|consen 725 LRQATKKLDLWRLPEILIIHLKRFQYSRESSSKVKTKVEFPLGSLDLSEFVVNKEQ----VLYDLYAVGNHYGQ-LSGGH 799 (842)
T ss_pred HHHHhhhhhhhhCCceEEEEeecceeechhhhhhCccccCCCcCCCcchhhccCcc----ceeeeeeeecccCC-cCCcc
Confidence 999999999999999999999999999988899999999999 6999999977632 89999999999997 99999
Q ss_pred EEEEEEc-CCCeEEEEeCCcceEeccccccCCCeEEEEEEEcC
Q 005687 377 YFSYIRS-SPDTWHRLNDSRVTRVEEEFVLSQDAYILFYAKQG 418 (683)
Q Consensus 377 Y~ayvr~-~~~~Wy~fNDs~Vs~vs~eeV~s~~AYiLfY~R~~ 418 (683)
|+||+|. .+++||.|||+.|.+++++++.+..||+|||+|++
T Consensus 800 Yta~~k~~~~~~w~~fdDs~v~~~~~~~i~t~~aY~Lfy~r~~ 842 (842)
T KOG1870|consen 800 YTAYAKNVGDGKWYLFDDSSVSEVDEDEIDTEAAYVLFYRRLD 842 (842)
T ss_pred hhhhhhcCCCCceEEeccccCCCCChhhcccccceEEEEEecC
Confidence 9999999 58899999999999999999999999999999964
No 32
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-39 Score=342.37 Aligned_cols=295 Identities=23% Similarity=0.396 Sum_probs=251.9
Q ss_pred CCccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCchhhHHHHHHHHHHHHHhcC----CCcccchhHHhhh
Q 005687 107 GAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASS----GKVLSPRKLVDNL 182 (683)
Q Consensus 107 p~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~ll~~L~~l~~~~~~ss----~~~i~P~~fl~~L 182 (683)
.+||.|+||+||+||+||.|+....+...+....+..++.-..+..++.|+|..++..|.... ...|.|..|...+
T Consensus 303 ~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P~~~l~CQl~kll~~mk~~p~~~y~ngi~p~~fk~~i 382 (749)
T COG5207 303 YVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNPLECLFCQLMKLLSKMKETPDNEYVNGISPLDFKMLI 382 (749)
T ss_pred ccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeecCCchhHHHHHHHHHhhccCCCCccccCCcChhhHHHHH
Confidence 589999999999999999999998887766655555555446677899999999998666544 2479999999999
Q ss_pred hhccccccccccccHHHHHHHHHHHHHHhhccCCCCccccccCCCccceeecceEEEEEEEecCCCCcccccccceeeee
Q 005687 183 NYISSFFQRYQQEDAHEFLQCLLDRLESCCLDSKTKDESLSSQGDNIVQRVFGGCLISKLQCCNCGSCSDTYEPLIDLSL 262 (683)
Q Consensus 183 ~~~~~~f~~~~QQDA~Efl~~LLd~L~~e~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C~~Cg~~S~~~E~F~~LsL 262 (683)
++-.+.|..++||||+|||.+||+.|++... +...+.|.++|...+..++.|..|+.++..+++...+.+
T Consensus 383 gq~h~eFg~~~QQDA~EFLlfLL~kirk~~~----------S~~~~~It~lf~Fe~e~rlsC~~C~~v~ySye~~~~i~i 452 (749)
T COG5207 383 GQDHPEFGKFAQQDAHEFLLFLLEKIRKGER----------SYLIPPITSLFEFEVERRLSCSGCMDVSYSYESMLMICI 452 (749)
T ss_pred cCCchhhhhhhhhhHHHHHHHHHHHHhhccc----------hhcCCCcchhhhhhhcceecccccccccccccceEEEEe
Confidence 9999999999999999999999999986322 223457889999999999999999999999999999988
Q ss_pred eeccc---CChHHHHHhhhhhccccCCCCcccccccCccceeeeeeeeecCCceeEEEEeeeeecCceeeeecceeecCc
Q 005687 263 EIEDV---GSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTDGSYVVKIDKHVEFPL 339 (683)
Q Consensus 263 ~I~~~---~sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K~~~I~~LP~vLiIhLkRF~~d~~~~~Ki~~~V~FP~ 339 (683)
++.+. .++.++++.|+.+..|+ |.|+.|+.+..|.++..|..||++||++..||...+....|+..++.+..
T Consensus 453 ~le~n~E~~di~~~v~a~f~pdtiE-----~~CenCk~K~~a~~k~~~kslPk~LIlq~~R~~lqny~v~kls~pi~~~~ 527 (749)
T COG5207 453 FLEGNDEPQDIRKSVEAFFLPDTIE-----WSCENCKGKKKASRKPFIKSLPKYLILQVGRYSLQNYKVEKLSDPIEMRS 527 (749)
T ss_pred ecccCcchhhHHHHHHheECcccee-----eehhhhcCcccccccchhhccCceeEEecceeeccceeehhccCceEEcc
Confidence 88754 47999999999999998 99999999999999999999999999999999998888888888888876
Q ss_pred --cccccccccCCC----------C-------------------------------------------------------
Q 005687 340 --ELDLKPYTSGGQ----------N------------------------------------------------------- 352 (683)
Q Consensus 340 --~LDLs~y~~~~~----------~------------------------------------------------------- 352 (683)
.++++.|+.... +
T Consensus 528 D~m~~~~s~msk~~PqtEn~LPdedE~~t~Nqs~I~qL~~mGfp~~~~~rAL~~tgNqDaEsAMNWLFqHMdDPdlndP~ 607 (749)
T COG5207 528 DDMIKLGSFMSKFDPQTENLLPDEDEAFTDNQSLIRQLVDMGFPEEDAARALGITGNQDAESAMNWLFQHMDDPDLNDPF 607 (749)
T ss_pred ccccchhhHhhccCCcccccCCccccccCchHHHHHHHHHcCCCHHHHHHHHhhccCcchHHHHHHHHhhccCcccCCCC
Confidence 388888875410 0
Q ss_pred --------------------------------------------------C------------------------Cccee
Q 005687 353 --------------------------------------------------S------------------------DVELK 358 (683)
Q Consensus 353 --------------------------------------------------~------------------------~~~~~ 358 (683)
+ .....
T Consensus 608 ~~~~~vPKkDkeVdE~~~~Slle~Gln~n~~Rkal~~~n~d~~r~V~w~~N~~D~tF~EP~v~~eeqqqk~~~~~STa~P 687 (749)
T COG5207 608 VPPPNVPKKDKEVDESKARSLLENGLNPNLCRKALMDMNTDSKRRVVWCINDDDGTFPEPEVPNEEQQQKKDLGYSTAKP 687 (749)
T ss_pred CCCCCCCcccccccHHHHHHHHHcCCCHHHHHHHHHHccCCchheEEEEEeCCCCCCCCCCCCchhhhhcccccccccCc
Confidence 0 01135
Q ss_pred EEEeEEEEeecCCCCCCcEEEEEEcC-C--CeEEEEeCCcceEeccccccCCCeEEEEEEE
Q 005687 359 YHLYAIVEHMGSSPTCGHYFSYIRSS-P--DTWHRLNDSRVTRVEEEFVLSQDAYILFYAK 416 (683)
Q Consensus 359 YeL~AVV~H~G~s~~sGHY~ayvr~~-~--~~Wy~fNDs~Vs~vs~eeV~s~~AYiLfY~R 416 (683)
|.|.|||+|.|+++++|||++|||.. . -+|..|||+++..++.=+++..+.||+||.|
T Consensus 688 YaLtAvI~HkG~s~haGHYv~fIrk~~~~K~kWvl~nDek~v~~~svE~~k~nGYiylf~R 748 (749)
T COG5207 688 YALTAVICHKGDSIHAGHYVWFIRKNGKDKWKWVLKNDEKTVLNSSVEVLKDNGYIYLFKR 748 (749)
T ss_pred ccceeEEeccCCcccccceEEEEecccCcceeEEEEccchheehhhHHHHhhCCeEEEEec
Confidence 99999999999999999999999984 2 3799999999999887778889999999998
No 33
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.8e-38 Score=331.61 Aligned_cols=234 Identities=24% Similarity=0.309 Sum_probs=192.3
Q ss_pred CCCccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCchhhHHHHHHHHHHHHHhcCCCcccchhHHhhhhhc
Q 005687 106 VGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSPRKLVDNLNYI 185 (683)
Q Consensus 106 ~p~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~ll~~L~~l~~~~~~ss~~~i~P~~fl~~L~~~ 185 (683)
..+||.|.|.|||+||+||+|+++|+||+++....+ ......|++|+|..||. .
T Consensus 14 ~~~gl~~~~~~~y~n~~lq~~~~~~~~~~~~~~~~~-----~~~~~~~l~~el~~lfs-------------~-------- 67 (268)
T cd02672 14 NYAGLENHITNSYCNSLLQLLYFIPPFRNFTAIILV-----ACPKESCLLCELGYLFS-------------T-------- 67 (268)
T ss_pred cccccccCCccchHHHHHHHHHhcHHHHHHHHhhcc-----cCCcCccHHHHHHHHHH-------------H--------
Confidence 358999999999999999999999999998432211 14556799999999981 0
Q ss_pred cccccccccccHHHHHHHHHHHHHHhhccCCCCccccccCCCccceeecceEEEEEEEecCCCCcccccccceeeeeeec
Q 005687 186 SSFFQRYQQEDAHEFLQCLLDRLESCCLDSKTKDESLSSQGDNIVQRVFGGCLISKLQCCNCGSCSDTYEPLIDLSLEIE 265 (683)
Q Consensus 186 ~~~f~~~~QQDA~Efl~~LLd~L~~e~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C~~Cg~~S~~~E~F~~LsL~I~ 265 (683)
=.+-|.++|++.+..+.... + ..|++++.+.++|+.|+|+++
T Consensus 68 ----------~iq~F~~fll~~i~~~~~~~------------------~----------~~C~~~s~~~~~~~~LsLpip 109 (268)
T cd02672 68 ----------LIQNFTRFLLETISQDQLGT------------------P----------FSCGTSRNSVSLLYTLSLPLG 109 (268)
T ss_pred ----------HHHHHHHHHHHHHHHHhccc------------------C----------CCCCceeeccccceeeeeecC
Confidence 12457788899887543220 0 579999999999999999998
Q ss_pred c-----cCChHHHHHhhhhhccccCCCCcccccccCccceeeeeeeeecCCc----eeEEEEeeeeecCc-------eee
Q 005687 266 D-----VGSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPS----VAAFHLKRFKTDGS-------YVV 329 (683)
Q Consensus 266 ~-----~~sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K~~~I~~LP~----vLiIhLkRF~~d~~-------~~~ 329 (683)
. ..+|.++|+.|+..|.+ +++.|++|++.+.+.|+..|+++|+ ||+|||+||.+... ...
T Consensus 110 ~~~~~~~~sl~~cL~~~~~~E~~----~~~~C~~C~~~~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~~~~~~~~~~~~~ 185 (268)
T cd02672 110 STKTSKESTFLQLLKRSLDLEKV----TKAWCDTCCKYQPLEQTTSIRHLPDILLLVLVINLSVTNGEFDDINVVLPSGK 185 (268)
T ss_pred ccccccCCCHHHHHHHHhhhhhc----ccccccccCcccccEEEEEeecCCCcccceEEEEEeccChhhcccCcceeEEE
Confidence 4 35999999999998865 3489999999999999999999999 99999999986532 245
Q ss_pred eecceeecCccccccccccCCCCCCcceeEEEeEEEEeecCCCCCCcEEEEEEcC-----CCeEEEEeCCcceEeccccc
Q 005687 330 KIDKHVEFPLELDLKPYTSGGQNSDVELKYHLYAIVEHMGSSPTCGHYFSYIRSS-----PDTWHRLNDSRVTRVEEEFV 404 (683)
Q Consensus 330 Ki~~~V~FP~~LDLs~y~~~~~~~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr~~-----~~~Wy~fNDs~Vs~vs~eeV 404 (683)
|+...|.||..+++..+..... ....+|+|+|||+|.|.+.++|||+||||.. .++||.|||..|++|++
T Consensus 186 ~~~~~v~f~~~~~~~~~~~~~~--~~~~~Y~L~gvV~hig~~~~~GHyva~vk~~~~~~~~~~WylFND~~V~~vs~--- 260 (268)
T cd02672 186 VMQNKVSPKAIDHDKLVKNRGQ--ESIYKYELVGYVCEINDSSRGQHNVVFVIKVNEESTHGRWYLFNDFLVTPVSE--- 260 (268)
T ss_pred ecCCeecccccccchhhhccCC--CCCceEEEEEEEEEecCCCCCCcEEEEEEccCCCCCCCcEEEecCeEEEEcCc---
Confidence 7888999999887766654332 3457999999999999866899999999985 57899999999999998
Q ss_pred cCCCeEEEEEE
Q 005687 405 LSQDAYILFYA 415 (683)
Q Consensus 405 ~s~~AYiLfY~ 415 (683)
.||||||+
T Consensus 261 ---~aYiLfY~ 268 (268)
T cd02672 261 ---LAYILLYQ 268 (268)
T ss_pred ---hheeeecC
Confidence 89999995
No 34
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=100.00 E-value=7.4e-35 Score=308.80 Aligned_cols=279 Identities=24% Similarity=0.367 Sum_probs=241.1
Q ss_pred CccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCchhhHHHHHHHHHHHHH-hcCCCcccchhHHhhhhhcc
Q 005687 108 AGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSL-ASSGKVLSPRKLVDNLNYIS 186 (683)
Q Consensus 108 ~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~ll~~L~~l~~~~~-~ss~~~i~P~~fl~~L~~~~ 186 (683)
+||.|.+++||+||+||+|+++|++++.++.+. . ....+|++|+|+-+|.++. .+.+..+.+..|+.+|++..
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~---~---c~~e~cL~cELgfLf~ml~~~~~g~~cq~sNflr~l~~~~ 74 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL---E---CPKEFCLLCELGFLFDMLDSKAKGINCQASNFLRALSWIP 74 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc---C---CCccccHHHHHHHHHHHhhhhcCCCcChHHHHHHHHhcCH
Confidence 599999999999999999999999999998865 1 4567899999999999877 77788999999999999987
Q ss_pred ccccccccccHHHHHHHHHHHHHHhhccCCCC----ccccccCCCccceeecceEEEEEEEecCCCCcccccccceeeee
Q 005687 187 SFFQRYQQEDAHEFLQCLLDRLESCCLDSKTK----DESLSSQGDNIVQRVFGGCLISKLQCCNCGSCSDTYEPLIDLSL 262 (683)
Q Consensus 187 ~~f~~~~QQDA~Efl~~LLd~L~~e~~~~~~~----~~~~~~~~~s~I~~lF~G~l~s~i~C~~Cg~~S~~~E~F~~LsL 262 (683)
.....+.|+|.++|+++||++|+.++...... .+.......+.|.++|+..+....+|..|+..+.+.+....+.|
T Consensus 75 ~a~~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~c~~c~~~~~~~~~~~~~~l 154 (295)
T PF13423_consen 75 EAAALGLQQDIQSLNRFLLEQLSMELLTFKPDIFHTSENSSSSPESSISQLFGTSFETTIRCTSCGHESVKESSTLVLDL 154 (295)
T ss_pred HHHhcchhHHHHHHHHHHHHHHhHHHHhcCcccccccccccCCCcchHHHHhCcceeeeecccccCCeEEeecceeeeec
Confidence 65667789999999999999999987664431 22233456678999999999999999999999998888888888
Q ss_pred eecc---cCChHHHHHhhhhhccccCCCCcccccccCccceeeeeeeeecCCceeEEEEeeeeecCceeeeecceeecCc
Q 005687 263 EIED---VGSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTDGSYVVKIDKHVEFPL 339 (683)
Q Consensus 263 ~I~~---~~sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K~~~I~~LP~vLiIhLkRF~~d~~~~~Ki~~~V~FP~ 339 (683)
..+. ..++.+.|+.++..+.... ..|++|++......+..|.+||+||.|.++|+..+..+..|....+.+|.
T Consensus 155 ~yp~~~~~~tf~~~Le~sl~~e~~~~----a~C~~C~~~~~~~~~r~i~~LPpVL~In~~~~~~~~~w~~~~~~~~~ip~ 230 (295)
T PF13423_consen 155 PYPPSNSNVTFSQVLEHSLNREQQTR----AWCEKCNKYQPTEQRRTIRSLPPVLSINLNRYSEEEFWPKKNWLKIWIPP 230 (295)
T ss_pred cCCCCCccchHHHHHHHHHhhccccc----ccccccccccceeeeeeccCCCcEEEEEccCCCcccccccccCCceecce
Confidence 7765 4699999999999887764 78999999999999999999999999999999777545678999999999
Q ss_pred cccccccccCCC-----CCCcceeEEEeEEEEeecCCCCCCcEEEEEEcC---CCeEEEEeCCcc
Q 005687 340 ELDLKPYTSGGQ-----NSDVELKYHLYAIVEHMGSSPTCGHYFSYIRSS---PDTWHRLNDSRV 396 (683)
Q Consensus 340 ~LDLs~y~~~~~-----~~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr~~---~~~Wy~fNDs~V 396 (683)
.+++..++.... ......+|+|.|+|+|.|.+.++|||+||||.. +++||.|||..|
T Consensus 231 ~i~~~~~~~~~~~~~~~~~~~~~~Y~L~~~V~~i~~~~~~~HlVs~vrv~~~~~~~W~lFNDflV 295 (295)
T PF13423_consen 231 SINLPHFIADDSQSDLEGESGIFKYELRSMVCHIGDSIESGHLVSLVRVGPSDDSQWYLFNDFLV 295 (295)
T ss_pred eeeccccccccccccccCCCCceEEEEEEEEEEecCCCCCCceEEEEEcCCCCCCcEEEECcEeC
Confidence 999998886543 244568999999999999999999999999985 469999999765
No 35
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.1e-34 Score=295.22 Aligned_cols=198 Identities=24% Similarity=0.380 Sum_probs=157.7
Q ss_pred ccccCCC-ccchHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCchhhHHHHHHHHHHHHHhcCCCcccchhHHhhhhhccc
Q 005687 109 GLENLGN-TCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSPRKLVDNLNYISS 187 (683)
Q Consensus 109 GL~NlGN-TCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~ll~~L~~l~~~~~~ss~~~i~P~~fl~~L~~~~~ 187 (683)
|+.|.+| +|||-|+|-+||.
T Consensus 1 g~~~~~~~~cy~d~~~~~~f~----------------------------------------------------------- 21 (241)
T cd02670 1 GAQNHCNVSCYLDALLFAMFA----------------------------------------------------------- 21 (241)
T ss_pred CCccccCceeehHHHHHHHHH-----------------------------------------------------------
Confidence 7899999 9999999999986
Q ss_pred cccccccccHHHHHHHHHHHHHHhhccCCCCccccccCCCccceeecceE-EEEEEEecCCCCcccccccceeeeeeec-
Q 005687 188 FFQRYQQEDAHEFLQCLLDRLESCCLDSKTKDESLSSQGDNIVQRVFGGC-LISKLQCCNCGSCSDTYEPLIDLSLEIE- 265 (683)
Q Consensus 188 ~f~~~~QQDA~Efl~~LLd~L~~e~~~~~~~~~~~~~~~~s~I~~lF~G~-l~s~i~C~~Cg~~S~~~E~F~~LsL~I~- 265 (683)
+|||+.||+.+|+++|+..+.. +.-++|.|- ...... +.-.|.|+.|.++..
T Consensus 22 -----~q~D~~e~~~~l~~~~~~~~~~--------------~~~~~~~~g~~~~~~~-------~~~~e~~l~l~ip~~~ 75 (241)
T cd02670 22 -----EQQDPEEFFNFITDKLLMPLLE--------------PKVDIIHGGKKDQDDD-------KLVNERLLQIPVPDDD 75 (241)
T ss_pred -----HhcCHHHHHHHHHHHHhhhhhh--------------HHHHHHhcCccccccc-------cccccceEEeecccCC
Confidence 8999999999999999764432 233444442 221110 223467777777654
Q ss_pred --ccCChHHHHHhhhhhccccCCCCcccccccCccceeeeeeeeecCCceeEEEEeeeeecCceeeeecceeecCccccc
Q 005687 266 --DVGSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTDGSYVVKIDKHVEFPLELDL 343 (683)
Q Consensus 266 --~~~sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K~~~I~~LP~vLiIhLkRF~~d~~~~~Ki~~~V~FP~~LDL 343 (683)
...+|++||+.|++.|. |.++|++|+||||||.++.+...|+.+.|.||..|||
T Consensus 76 ~~~~~tLedcLe~~~~~e~------------------------i~~lP~vLiIhLKRF~~~~~~~~Kl~~~I~fP~~Ldl 131 (241)
T cd02670 76 DGGGITLEQCLEQYFNNSV------------------------FAKAPSCLIICLKRYGKTEGKAQKMFKKILIPDEIDI 131 (241)
T ss_pred CCCcCCHHHHHHHHhchhh------------------------hhhCCCeEEEEEEccccCCCcceeCCcEECCCCcCCc
Confidence 34699999999999764 7899999999999999988667899999999999999
Q ss_pred cccccCCC--------------------CCCcceeEEEeEEEEeecCCCCCCcEEEEEEcCC------------CeEEEE
Q 005687 344 KPYTSGGQ--------------------NSDVELKYHLYAIVEHMGSSPTCGHYFSYIRSSP------------DTWHRL 391 (683)
Q Consensus 344 s~y~~~~~--------------------~~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr~~~------------~~Wy~f 391 (683)
.+|+.... .......|+|+|||+|.|.++++|||+||||... +.||+|
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~s~~sGHYva~vr~~~~~~~~~~~~~~~~~W~~F 211 (241)
T cd02670 132 PDFVADDPRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGTSLETGHYVAFVRYGSYSLTETDNEAYNAQWVFF 211 (241)
T ss_pred hhhcccccccccccccccccccccccccCCCCCeEEEEEEEEEeCCCCCCCcCeEEEEECCcccccccccCCCCCeEEEe
Confidence 99986541 1123478999999999998899999999999864 799999
Q ss_pred eCCcceEeccc------cccCCCeEEEEEE
Q 005687 392 NDSRVTRVEEE------FVLSQDAYILFYA 415 (683)
Q Consensus 392 NDs~Vs~vs~e------eV~s~~AYiLfY~ 415 (683)
||..|+.+... .+...+||||||+
T Consensus 212 DD~~v~~~~~~~~~~~~~~~~~~aYmLFYq 241 (241)
T cd02670 212 DDMADRDGVSNGFNIPAARLLEDPYMLFYQ 241 (241)
T ss_pred cCcccccccccccccchhcccCCceEEEeC
Confidence 99998877532 4567899999996
No 36
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-33 Score=316.60 Aligned_cols=308 Identities=30% Similarity=0.462 Sum_probs=247.0
Q ss_pred CCccccCCCccchH--HHHHHHhCCHHHHHHHHhCCCCCCCCCCCchhhHHHHHHHHHHHHHhc--CCCcccchhHHhhh
Q 005687 107 GAGLENLGNTCFIN--AILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLAS--SGKVLSPRKLVDNL 182 (683)
Q Consensus 107 p~GL~NlGNTCYlN--SvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~ll~~L~~l~~~~~~s--s~~~i~P~~fl~~L 182 (683)
--|..|.+++|+-| ++.|.+..+..+++....+....... ......++..+.+++...... ....+.|..|+..+
T Consensus 232 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~i~p~~~~~~~ 310 (587)
T KOG1864|consen 232 VFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTSLKRS-YIIKEELLTCLLDLFSSISSRKKLVGRISPTRFISDL 310 (587)
T ss_pred ccCccccCccccccchhhHHHHHhhhhhcccccchhhcccch-hhhhHHHHHHhhhhccchhhhcccccccCcchhhhhh
Confidence 36899999999999 99999999988886554433222111 111223333444444322221 22478999999999
Q ss_pred hhccccccccccccHHHHHHHHHHHHHHhhccCCCC-----------ccccc------------cCCCccceeecceEEE
Q 005687 183 NYISSFFQRYQQEDAHEFLQCLLDRLESCCLDSKTK-----------DESLS------------SQGDNIVQRVFGGCLI 239 (683)
Q Consensus 183 ~~~~~~f~~~~QQDA~Efl~~LLd~L~~e~~~~~~~-----------~~~~~------------~~~~s~I~~lF~G~l~ 239 (683)
+.....|..+.||||+||+.++++.+++.+...... +.... .....+++.+|.|++.
T Consensus 311 ~~~~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~v~~lf~g~l~ 390 (587)
T KOG1864|consen 311 IKENELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAASWTNKGHHKSLRENWVSKLFQGILT 390 (587)
T ss_pred hhcCCccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccccccccccccccccchhHHHHhhcCeee
Confidence 999999999999999999999999998765432210 11111 1246789999999999
Q ss_pred EEEEecCCCCcccccccceeeeeeec--ccCChHHHHHhhhhhccccCCCCcccccccCccceeeeeeeeecCCceeEEE
Q 005687 240 SKLQCCNCGSCSDTYEPLIDLSLEIE--DVGSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFH 317 (683)
Q Consensus 240 s~i~C~~Cg~~S~~~E~F~~LsL~I~--~~~sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K~~~I~~LP~vLiIh 317 (683)
.+..|..|+..+...+.|.+++++++ ...++..+|..|...|.+. ++++|.|++|...+.|++.+.++++|.+|+||
T Consensus 391 ~et~Clsc~t~T~~de~f~D~~~~v~~de~~si~~~l~~~~~~e~l~-g~nky~c~~c~s~qeae~~l~~k~lp~~L~l~ 469 (587)
T KOG1864|consen 391 NETRCLSCETITSRDEGFLDLSVAVEIDENTSITNLLKSFSSTETLS-GENKYSCENCCSLQEAERRLKIKKLPYVLTLH 469 (587)
T ss_pred eeeeeccccccccccccccccceeccccccccHHHHHHHhcchhhcc-CCCcccccccCchhhHHHhccccCCcceeeee
Confidence 99999999999999999999999998 6889999999999999986 59999999999999999999999999999999
Q ss_pred EeeeeecCce--eeeecceeecCccccccccccCCCCCCcceeEEEeEEEEeecCCCCCCcEEEEEEcCCCeEEEEeCCc
Q 005687 318 LKRFKTDGSY--VVKIDKHVEFPLELDLKPYTSGGQNSDVELKYHLYAIVEHMGSSPTCGHYFSYIRSSPDTWHRLNDSR 395 (683)
Q Consensus 318 LkRF~~d~~~--~~Ki~~~V~FP~~LDLs~y~~~~~~~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr~~~~~Wy~fNDs~ 395 (683)
|+||++.... ..|+...|.||.+|.+.....+.. ....+|.|+|||+|.|.+.+.|||+||+|...-.|+.|||+.
T Consensus 470 Lkrfk~~~~~~~~~kl~~~v~~plel~l~~~~~~~~--~~~~~Y~L~avVvH~G~~p~~GHYia~~r~~~~nWl~fdD~~ 547 (587)
T KOG1864|consen 470 LKRFKYSEQQNRYTKLLYRVVFPLELRLKDTLKDDN--NPDRKYDLVAVVVHLGSTPNRGHYVAYVKSLDFNWLLFDDDN 547 (587)
T ss_pred hhccccccccccccccccccccccceeecccccccc--CccceeeEEEEEEeccCCCCCcceEEEEeeCCCCceeccccc
Confidence 9999998533 369999999999999876654442 124699999999999999999999999999655599999999
Q ss_pred ceEeccccccC---CCeEEEEEEEcC
Q 005687 396 VTRVEEEFVLS---QDAYILFYAKQG 418 (683)
Q Consensus 396 Vs~vs~eeV~s---~~AYiLfY~R~~ 418 (683)
|..++.++|.. ...|+++|....
T Consensus 548 V~~~s~~~v~~~~~~s~~~~~~~~~~ 573 (587)
T KOG1864|consen 548 VEPISEEPVSEFTGSSGDTLFYYVQV 573 (587)
T ss_pred ccccCcchhhhccCCCccceeeeEEe
Confidence 99999998873 678888887754
No 37
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.5e-30 Score=270.22 Aligned_cols=306 Identities=28% Similarity=0.366 Sum_probs=226.2
Q ss_pred CCCCccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCchhhHHHHHHHHHHHHHh-----------------
Q 005687 105 GVGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLA----------------- 167 (683)
Q Consensus 105 ~~p~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~ll~~L~~l~~~~~~----------------- 167 (683)
-.|+|+.|-||-|||||+||+|..|++|.+.+........... .....++.+++.+....-.
T Consensus 26 i~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~~~~~~~~-~~stp~lda~~~~~~df~n~~~~k~~r~N~~~~~~~ 104 (420)
T KOG1871|consen 26 IDPRGSINKCNICFMNSILQALLYCSPFYNLLELIKRADGTVK-EGSTPLLDASRPASSDFNNDSDAKLPRKNSLRVPEH 104 (420)
T ss_pred cCCccccccceeEeeHHHHHHHHhCccHHHHHHhhhhhcCcee-cccchhHHHHHHHHhhccccchhhhhhhccCCcccc
Confidence 4579999999999999999999999999998876542222111 1111233333333221110
Q ss_pred -----------cCCCcccchhHHhhhhhccc--cccccccccHHHHHHHHHHHHHHhhccCCCC----------------
Q 005687 168 -----------SSGKVLSPRKLVDNLNYISS--FFQRYQQEDAHEFLQCLLDRLESCCLDSKTK---------------- 218 (683)
Q Consensus 168 -----------ss~~~i~P~~fl~~L~~~~~--~f~~~~QQDA~Efl~~LLd~L~~e~~~~~~~---------------- 218 (683)
..+.++-|..+...+..... ....|.|+||+||+..+||.||+++......
T Consensus 105 ~~~~ses~~~d~~~dav~~d~~~~~l~t~~~~e~~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~~~~i~~ 184 (420)
T KOG1871|consen 105 VVEKSESNKSDLQGDAVKPDPIYLDLLTMSRFESLQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTPRGLINN 184 (420)
T ss_pred ccchhhhhhhcccCccccCCchhhhcccCCchhhccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCcccccccccccc
Confidence 01123334444444443322 2356999999999999999999986431100
Q ss_pred -----ccc-------------------------cccCCCccceeecceEEEEEEEecCCCCcccccccceeeeeee--cc
Q 005687 219 -----DES-------------------------LSSQGDNIVQRVFGGCLISKLQCCNCGSCSDTYEPLIDLSLEI--ED 266 (683)
Q Consensus 219 -----~~~-------------------------~~~~~~s~I~~lF~G~l~s~i~C~~Cg~~S~~~E~F~~LsL~I--~~ 266 (683)
.+. ......+.|.++|+|++++.+.-.. .+++.+.+||..|+|+| ..
T Consensus 185 ~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~~-nkeS~tlqPF~tlqldiq~~~ 263 (420)
T KOG1871|consen 185 GNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQPS-NKESATLQPFFTLQLDIQSEK 263 (420)
T ss_pred cccccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceeccc-cccccccCccceeeeeeeccc
Confidence 000 0012346789999999999887544 55679999999999999 47
Q ss_pred cCChHHHHHhhhhhccccCCCCcccccccCccceeeeeeeeecCCceeEEEEeeeeec-CceeeeecceeecCccccccc
Q 005687 267 VGSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTD-GSYVVKIDKHVEFPLELDLKP 345 (683)
Q Consensus 267 ~~sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K~~~I~~LP~vLiIhLkRF~~d-~~~~~Ki~~~V~FP~~LDLs~ 345 (683)
..+++++|+.+...|.+.+ |.-. -+..+.+.++..+.+||++|++|++||.|. .+...|+.+.++||-+|.+..
T Consensus 264 i~sv~~ales~~~re~lp~----~st~-s~~eV~~s~q~~leklp~vlilhlkrF~ye~tgg~~k~~K~i~~~~~l~i~~ 338 (420)
T KOG1871|consen 264 IHSVQDALESLVARESLPG----YSTK-SGQEVEASSQTTLEKLPPVLILHLKRFVYEKTGGARKLGKKIEYPWTLKISK 338 (420)
T ss_pred cCCHHHHhhccChhhcccc----eecC-CCCeechhhhhhHhhcchhhhhhhhHHHHHhccchhhhchhhhccceeeech
Confidence 7899999999999998875 5433 677889999999999999999999999887 566789999999999888765
Q ss_pred cccCC-C---CCCcceeEEEeEEEEeecCCCCCCcEEEEEEc-CCCeEEEEeCCcceEeccccccC----CCeEEEEEEE
Q 005687 346 YTSGG-Q---NSDVELKYHLYAIVEHMGSSPTCGHYFSYIRS-SPDTWHRLNDSRVTRVEEEFVLS----QDAYILFYAK 416 (683)
Q Consensus 346 y~~~~-~---~~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr~-~~~~Wy~fNDs~Vs~vs~eeV~s----~~AYiLfY~R 416 (683)
-+-.. . -......|.|.|||.|.|.++..|||++-+.. ..+.|+.+||..|..+..++|+. ..||+|+|++
T Consensus 339 ~~~s~gvk~~~~~~~~~yks~~vvyhtgtsatvghYl~dv~~s~~~gw~rIDD~~i~~v~q~dv~~~t~~r~~yllyY~~ 418 (420)
T KOG1871|consen 339 NCFSQGLKIRILIATRPYKSLAVVYHTGTSATVGHYLEDVSRSVPSGWQRIDDALILFVAQEDVEKVTGSRTPYLLYYIE 418 (420)
T ss_pred hhhccccchhhhccccccceEEEEEecccccccCceEEeeeecccCceeEeccceeeeccHhhhccccCccchheeEeee
Confidence 44321 0 12345689999999999999999999998865 46789999999999999999984 6899999998
Q ss_pred c
Q 005687 417 Q 417 (683)
Q Consensus 417 ~ 417 (683)
.
T Consensus 419 ~ 419 (420)
T KOG1871|consen 419 A 419 (420)
T ss_pred c
Confidence 5
No 38
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=99.87 E-value=1.8e-22 Score=210.65 Aligned_cols=285 Identities=24% Similarity=0.301 Sum_probs=216.3
Q ss_pred CCCccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCchhhHHHHHHHHHHHHHhcCC--CcccchhHHhhhh
Q 005687 106 VGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSG--KVLSPRKLVDNLN 183 (683)
Q Consensus 106 ~p~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~ll~~L~~l~~~~~~ss~--~~i~P~~fl~~L~ 183 (683)
..+||.|+-++=|.|++||+|.+.+++|+|++..... ......++..|..+++.+|.... .-++|.+|++++-
T Consensus 133 G~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~~n~-----~d~~~~lv~rl~~l~rklw~~r~fk~hvSphe~lqaV~ 207 (442)
T KOG2026|consen 133 GFVGLNNIKANDYANAVLQALSHVVPLRNYFLLEENY-----FDNLTELVQRLGELIRKLWNPRNFKGHVSPHEFLQAVM 207 (442)
T ss_pred eeeccchhhhHHHHHHHHHHHhccchhhhhhcccccc-----cchhHHHHHHHHHHHHHhcChhhhcccCCHHHHHHHHH
Confidence 3489999999999999999999999999999865321 33345677788888887776553 4699999999876
Q ss_pred hcc-ccccccccccHHHHHHHHHHHHHHhhccCCCCccccccCCCccceeecceEEEEEEEecC----CCCcccccccce
Q 005687 184 YIS-SFFQRYQQEDAHEFLQCLLDRLESCCLDSKTKDESLSSQGDNIVQRVFGGCLISKLQCCN----CGSCSDTYEPLI 258 (683)
Q Consensus 184 ~~~-~~f~~~~QQDA~Efl~~LLd~L~~e~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C~~----Cg~~S~~~E~F~ 258 (683)
... ..|..++|-|+-||+.+||+.||..+...+ ...++|+..|+|.++...+=.. -.......-+|+
T Consensus 208 ~~s~k~f~i~~q~DpveFlswllntlhs~l~~~k--------~~~SIi~~~fqG~~ri~k~~~~~~~~~~~~~i~~~~Fl 279 (442)
T KOG2026|consen 208 KLSKKRFRIGQQSDPVEFLSWLLNTLHSDLRGSK--------KASSIIHKSFQGEVRIVKEKQGEASENENKEISVMPFL 279 (442)
T ss_pred HHhhhheecCCCCCHHHHHHHHHHHHHHHhCCCC--------CchhHhhHhhcceEEeeeeccccccccccceEEEEeeE
Confidence 654 458999999999999999999998876643 3458999999999976544322 111233466899
Q ss_pred eeeeeecccC--------------ChHHHHHhhhhhccccCCCCcccccccCccceeeeeeeeecCCceeEEEEeeeeec
Q 005687 259 DLSLEIEDVG--------------SLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTD 324 (683)
Q Consensus 259 ~LsL~I~~~~--------------sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K~~~I~~LP~vLiIhLkRF~~d 324 (683)
.|.|++|... .|-+.|..|.....-+ +. ....+ ++..+.++|++|+||++||..+
T Consensus 280 ~LtLDLP~~plfkD~~e~niiPQV~l~~lL~Kf~g~t~~e-----~~-----~~~~~-~rf~l~k~P~ylifh~~rF~kN 348 (442)
T KOG2026|consen 280 YLTLDLPPPPLFKDVMEKNIIPQVALFDLLKKFDGETVTE-----VV-----TPKLA-MRFRLTKLPRYLIFHMKRFKKN 348 (442)
T ss_pred EEEecCCCCCcccchhhhcccccchHHHHHHHhcCceeee-----ec-----chhhh-hheeeecCCceEEEEeeecccc
Confidence 9999998543 4455566665432221 11 11122 7888999999999999999999
Q ss_pred CceeeeecceeecC-ccccccccccCCCC-CCcceeEEEeEEEEeecCCCCCCcEEEEEEcC-CCeEEEEeCCcceEecc
Q 005687 325 GSYVVKIDKHVEFP-LELDLKPYTSGGQN-SDVELKYHLYAIVEHMGSSPTCGHYFSYIRSS-PDTWHRLNDSRVTRVEE 401 (683)
Q Consensus 325 ~~~~~Ki~~~V~FP-~~LDLs~y~~~~~~-~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr~~-~~~Wy~fNDs~Vs~vs~ 401 (683)
+...+|+.+-++|| ..+|+.++...... ...-..|.|.|-++|. ..-|||..++++. .++||.++|-.|++...
T Consensus 349 n~f~ekNpTl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~i~~---~e~~~~riqi~~~~s~kW~eiqdl~v~e~~~ 425 (442)
T KOG2026|consen 349 NFFKEKNPTLVEFPYSEVDILHVLDRLKAVNHKVTQYSLVANAIHE---DEDGNFRIQIYDNSSEKWYEIQDLHVTERLP 425 (442)
T ss_pred CcccccCCceeeccCCccchhhhhhhcccccCccccccchhhhhcC---cccCceEEEEEeCCCcceEEecccchhhhhh
Confidence 88899999999999 46776655432211 1122689999999997 3469999999874 78999999999999999
Q ss_pred ccccCCCeEEEEEEEc
Q 005687 402 EFVLSQDAYILFYAKQ 417 (683)
Q Consensus 402 eeV~s~~AYiLfY~R~ 417 (683)
+-|.-..+||-+|+++
T Consensus 426 qmi~L~Es~iQiwe~~ 441 (442)
T KOG2026|consen 426 QMIFLKESFIQIWEKQ 441 (442)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 8888888898888774
No 39
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.78 E-value=1.3e-18 Score=196.70 Aligned_cols=300 Identities=19% Similarity=0.247 Sum_probs=212.5
Q ss_pred CCCCCccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCchhhHHHHHHHHHHHHHhcCCCcccchhHHhhhh
Q 005687 104 TGVGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSPRKLVDNLN 183 (683)
Q Consensus 104 ~~~p~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~ll~~L~~l~~~~~~ss~~~i~P~~fl~~L~ 183 (683)
....+||.-.+-+-|-|++||.|+.+|++|.+++.+. ....+|++|+|.-||.++-.+.+..+....|+.+|+
T Consensus 496 qT~yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~H~-------C~~e~CL~CELGFLF~Ml~~S~G~~Cqa~NFlraf~ 568 (1118)
T KOG1275|consen 496 QTTYAGLETDIPNSYCNAMIQLLYFLPPIRSIVLRHI-------CTKEFCLLCELGFLFTMLDSSTGDPCQANNFLRAFR 568 (1118)
T ss_pred cceeeccCCCCchHHHHHHHHHHHhccHHHHHHHcCc-------cchhHHHHHHHHHHHHHHhhhcCCccchhHHHHHHh
Confidence 3456899999988899999999999999999998762 566789999999999977778888999999999987
Q ss_pred hccccccc----------------cccccHHHHHHHHHHHHHHh-----hc-cCCCCccccccCCCccceeecceEEEEE
Q 005687 184 YISSFFQR----------------YQQEDAHEFLQCLLDRLESC-----CL-DSKTKDESLSSQGDNIVQRVFGGCLISK 241 (683)
Q Consensus 184 ~~~~~f~~----------------~~QQDA~Efl~~LLd~L~~e-----~~-~~~~~~~~~~~~~~s~I~~lF~G~l~s~ 241 (683)
.....-.. ..-|||.-|.....++..+. +. .....++........++.+.|+-.....
T Consensus 569 t~~~a~~LG~vl~d~~~~~~~~~~~liq~~~~~~~set~~~~d~~~~~~~~~s~~~~~~~~~vn~~~~l~q~F~~~~e~~ 648 (1118)
T KOG1275|consen 569 TNPEASALGLVLSDTQISGTVNDDVLIQDAEGFISSETSRHLDCQDCRGLQQSESVDGESFKVNYAPVLQQSFCQEIEKS 648 (1118)
T ss_pred hChHhhhhcccccchhhccccchHHHhhhhhhccchhhhhhhhHHHhhhhhhhhcccCceeeecchhHHHHHhhhHHHHh
Confidence 65432111 11234444433333222110 00 0111222333455678999999999999
Q ss_pred EEecCCCCcccccccceeeeeeecccC---------ChHHHHHhhhhhccccCCCCcccccccCccceeeeeeeeecCCc
Q 005687 242 LQCCNCGSCSDTYEPLIDLSLEIEDVG---------SLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPS 312 (683)
Q Consensus 242 i~C~~Cg~~S~~~E~F~~LsL~I~~~~---------sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K~~~I~~LP~ 312 (683)
..|..|+.+..+.-....+.+..++.. ...+.|+.-.... .+-+-.|+.|++......+..+..||.
T Consensus 649 ~~Cg~C~~~~~~~k~l~~~~lsyp~~~~id~~~~~~~F~~iL~R~l~l~----kn~~~~C~~C~k~ep~~q~~~vr~LPd 724 (1118)
T KOG1275|consen 649 LRCGECGDEKQKSKSLLRKVLSYPNVLLIDTLAKSNNFVEILKRSLSLF----KNKQAWCETCTKPEPTSQKKNVRSLPD 724 (1118)
T ss_pred hhcccccchhhhhhhhhheeecCCCccchhhcccccchHHHhhhhhhcc----cccccccccccCCCCcccccccccCcc
Confidence 999999987777655555555554321 2223333222211 122257999999999999999999999
Q ss_pred eeEEEEeeeeecCc----eeeeecceeecCccccccccccCC----------------CCCCcceeEEEeEEEEeecCCC
Q 005687 313 VAAFHLKRFKTDGS----YVVKIDKHVEFPLELDLKPYTSGG----------------QNSDVELKYHLYAIVEHMGSSP 372 (683)
Q Consensus 313 vLiIhLkRF~~d~~----~~~Ki~~~V~FP~~LDLs~y~~~~----------------~~~~~~~~YeL~AVV~H~G~s~ 372 (683)
+|.|...-+..... ...|....|.+|..+-|..--... .+...-.+|+|.|+|+|.|++.
T Consensus 725 ~L~in~~~~~~~~~~~~a~q~~~~~~vWLP~~~~~~~~k~~~~~v~~~s~~~~~~~~~~d~~~~~vYeL~a~V~~I~d~~ 804 (1118)
T KOG1275|consen 725 CLSINTCLNVHELVDFWARQNKLLEDVWLPEWFHMIISKNKAQLVSTISDLDVSPLPDYDEPSAVVYELDAMVHAIGDNE 804 (1118)
T ss_pred eeeeeeeccchhhhhhHHHhhccccccccchheeEEEecccceeeeeeccccCCCCccccCCceEEEEeeeEEEEeccCC
Confidence 99999887644321 234677888899887665332111 1123338999999999999988
Q ss_pred CCCcEEEEEEcC---------CCeEEEEeCCcceEeccccccC-----CCeEEEEE
Q 005687 373 TCGHYFSYIRSS---------PDTWHRLNDSRVTRVEEEFVLS-----QDAYILFY 414 (683)
Q Consensus 373 ~sGHY~ayvr~~---------~~~Wy~fNDs~Vs~vs~eeV~s-----~~AYiLfY 414 (683)
+.+|++++|+.. +.+||.|||..|++|+++|++. ..+-||+|
T Consensus 805 ~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV~~ite~EAl~~~~~WKvP~Il~Y 860 (1118)
T KOG1275|consen 805 NEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLVSEITEEEALHFDGPWKVPAILYY 860 (1118)
T ss_pred CccceEEEEEccCcccccCcCcceeEEEcceeeeeCChHHheEeccCccCcEEEEE
Confidence 999999999741 3599999999999999999874 67999999
No 40
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=98.73 E-value=9.9e-08 Score=96.76 Aligned_cols=131 Identities=21% Similarity=0.440 Sum_probs=87.9
Q ss_pred CCCccceeecceEEEEEEEecCCCCcccc-----cccceeeeeeecccCChHHHHHhhhhhccccCCCCcccccccCccc
Q 005687 225 QGDNIVQRVFGGCLISKLQCCNCGSCSDT-----YEPLIDLSLEIEDVGSLGSALESFTKLEKIEDPETKFTCEKCKEQV 299 (683)
Q Consensus 225 ~~~s~I~~lF~G~l~s~i~C~~Cg~~S~~-----~E~F~~LsL~I~~~~sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~ 299 (683)
+.+..|+++|.-.+.=...|..||+.... ...|..+ +++..-|.. ..--.|.+|+.+.
T Consensus 118 k~d~~~E~lF~~sf~WeFeC~~Cg~~~~~R~~K~L~TFtnv---~pdwhPLnA--------------~h~~pCn~C~~ks 180 (275)
T PF15499_consen 118 KLDPWIEKLFLYSFSWEFECSQCGHKYQNRCTKTLVTFTNV---IPDWHPLNA--------------VHFGPCNSCNSKS 180 (275)
T ss_pred hcchHHHhHhheeeEEEEEccccCChhhhhheeeecccCCC---CCCCCcccc--------------cccCCCcccCChH
Confidence 34567899999999999999999974322 2223222 233222211 1113699998873
Q ss_pred eeeeeeeeecCCceeEEEEeeeeecCceeeeecceeecCccccccccccCCCCCCcceeEEEeEEEEeecCCCCCCcEEE
Q 005687 300 SVEKQLMLDKVPSVAAFHLKRFKTDGSYVVKIDKHVEFPLELDLKPYTSGGQNSDVELKYHLYAIVEHMGSSPTCGHYFS 379 (683)
Q Consensus 300 ~a~K~~~I~~LP~vLiIhLkRF~~d~~~~~Ki~~~V~FP~~LDLs~y~~~~~~~~~~~~YeL~AVV~H~G~s~~sGHY~a 379 (683)
..+++.+.++|+|+.+|+.- + .|.. |+..|--.- .+..|.+.+||-+.-. . -|+++
T Consensus 181 -Q~rkMvlekv~~vfmLHFVe-----G----------LP~n-dl~~ysF~f----eg~~Y~Vt~VIQY~~~-~--~HFvt 236 (275)
T PF15499_consen 181 -QRRKMVLEKVPPVFMLHFVE-----G----------LPHN-DLQHYSFHF----EGCLYQVTSVIQYQAN-L--NHFVT 236 (275)
T ss_pred -HhHhhhhhcCchhhhhhhhc-----c----------CCcc-CCCccceee----cCeeEEEEEEEEEecc-C--ceeEE
Confidence 45677889999999999652 1 2222 222222111 2568999999998774 3 49999
Q ss_pred EEEcCCCeEEEEeCCcc
Q 005687 380 YIRSSPDTWHRLNDSRV 396 (683)
Q Consensus 380 yvr~~~~~Wy~fNDs~V 396 (683)
|+++.+|.|..+||-+=
T Consensus 237 Wi~~~dGsWLecDDLkg 253 (275)
T PF15499_consen 237 WIRDSDGSWLECDDLKG 253 (275)
T ss_pred EEEcCCCCeEeeccCCC
Confidence 99999999999999653
No 41
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only]
Probab=96.82 E-value=0.00067 Score=74.80 Aligned_cols=35 Identities=17% Similarity=0.379 Sum_probs=26.5
Q ss_pred eeeecCCceeEEEEeeeeecCceeeeecceeecCc
Q 005687 305 LMLDKVPSVAAFHLKRFKTDGSYVVKIDKHVEFPL 339 (683)
Q Consensus 305 ~~I~~LP~vLiIhLkRF~~d~~~~~Ki~~~V~FP~ 339 (683)
++++..|..++|+.-||..+.....+|...+..|.
T Consensus 516 ik~~e~pSc~iiqmprfgk~~km~~~i~pS~~l~V 550 (724)
T KOG3556|consen 516 IKSTETPSCQIIQMPRFGKSQKMPAAIGPSISLPV 550 (724)
T ss_pred cccccCcchhheeccccCcccccchhcCCceEeec
Confidence 34678999999999999877766667766666554
No 42
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.0038 Score=72.32 Aligned_cols=102 Identities=25% Similarity=0.323 Sum_probs=55.8
Q ss_pred cccCCCccchHHHHHHHhCCHHHHHHHHhCCCC-------CCC--CCCCchhhHHHHHHH---HHHHHHhcCCCc--ccc
Q 005687 110 LENLGNTCFINAILQCFTHTLPLVQALRSFDHP-------RPC--DGATEGFCVICALRD---HIELSLASSGKV--LSP 175 (683)
Q Consensus 110 L~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~-------~~~--~~~~~~~~ll~~L~~---l~~~~~~ss~~~--i~P 175 (683)
|.|.||+||.||+||+|..+|+|+--+...... ... .......+-.+.+.. .+... .+..+. ..-
T Consensus 34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~ 112 (587)
T KOG1864|consen 34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKN-SSSNESFNLSV 112 (587)
T ss_pred EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhcc-CCccccccchH
Confidence 999999999999999999999998766543210 000 001111111111111 11100 111111 122
Q ss_pred hhHHhhhhh---ccccccccccccHHHHHHHHHHHHHHhh
Q 005687 176 RKLVDNLNY---ISSFFQRYQQEDAHEFLQCLLDRLESCC 212 (683)
Q Consensus 176 ~~fl~~L~~---~~~~f~~~~QQDA~Efl~~LLd~L~~e~ 212 (683)
..+...+.. ....|....|+||++++.-++-.+....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~~~ 152 (587)
T KOG1864|consen 113 TQLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMAMVDDVM 152 (587)
T ss_pred HHHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhHHHhhhc
Confidence 222332222 2234777899999999999888877644
No 43
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=94.19 E-value=0.0091 Score=69.79 Aligned_cols=218 Identities=20% Similarity=0.307 Sum_probs=125.1
Q ss_pred cccccHHHHHHHHHHHHHHhhccCCCCccc-----------cccCCCccceeecceEEEEEEEecCCCCccccccccee-
Q 005687 192 YQQEDAHEFLQCLLDRLESCCLDSKTKDES-----------LSSQGDNIVQRVFGGCLISKLQCCNCGSCSDTYEPLID- 259 (683)
Q Consensus 192 ~~QQDA~Efl~~LLd~L~~e~~~~~~~~~~-----------~~~~~~s~I~~lF~G~l~s~i~C~~Cg~~S~~~E~F~~- 259 (683)
...-++.++|..++..|++....+....+. ......+++.++|+-....+..|..|.......+.-..
T Consensus 547 ~~~~~~S~lL~~ll~~l~~~~~~ss~~~~v~~aile~~~~Wk~~er~~l~~~lf~l~~~e~~Sc~~cr~~~n~peqsS~~ 626 (806)
T KOG1887|consen 547 KHEGVYSELLSDLLLSLEEVHNASSSAADVVVAILEFWQCWKNPERESLVNRLFTLEEKERMSCSKCRRDLNYPEQSSYG 626 (806)
T ss_pred HhhhhHHHHHHHHHhhhHHHhhhcchhhHHHHHHHhcccccccHHHHHHHHhhhhhhhhhhccccccccCCCCcchhhhh
Confidence 445578889999999998765432111000 11233567888999999999999999975544322111
Q ss_pred eeeeecccCChHHHHHhhhhhccccC--CCCccccc----ccCccceeeeeeeeecCCceeEEEEeeeeecCceeeeecc
Q 005687 260 LSLEIEDVGSLGSALESFTKLEKIED--PETKFTCE----KCKEQVSVEKQLMLDKVPSVAAFHLKRFKTDGSYVVKIDK 333 (683)
Q Consensus 260 LsL~I~~~~sL~~~L~~~~~~E~ie~--~dn~y~C~----~C~~~~~a~K~~~I~~LP~vLiIhLkRF~~d~~~~~Ki~~ 333 (683)
+.+.......+..++..++-.+.|.. -+.+..|+ +||+..- -.-.|.+.|+|.+|.+.+=...+..-. -.+
T Consensus 627 ~~~~a~slr~~k~a~~n~~f~~ilk~i~m~~~m~cD~~~gGCgk~n~--v~h~is~~P~vftIvlewEk~ETe~eI-~~T 703 (806)
T KOG1887|consen 627 IVIAADSLRQLKCAFQNITFEDILKNIRMNDKMLCDKETGGCGKANL--VHHILSPCPPVFTIVLEWEKSETEKEI-SET 703 (806)
T ss_pred hhccchhhhhHHHHhhhhhHHHHHHHhhhhhhhcccccCCCCcchhh--hhhhcCCCCCeeEeeeehhcccchHHH-HHH
Confidence 11111122233333322222111110 12234454 4665422 233578899999997665433321111 122
Q ss_pred eeecCccccccccccCCCCCCcceeEEEeEEEEeecCCCCCCcEEEEEEcCCCeEE--EEeCCcceEe-ccccccC----
Q 005687 334 HVEFPLELDLKPYTSGGQNSDVELKYHLYAIVEHMGSSPTCGHYFSYIRSSPDTWH--RLNDSRVTRV-EEEFVLS---- 406 (683)
Q Consensus 334 ~V~FP~~LDLs~y~~~~~~~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr~~~~~Wy--~fNDs~Vs~v-s~eeV~s---- 406 (683)
...+-.++|++...... ......|.|+++|.-... .++|.|+... .++|. ..+|..+..+ +|.+|.+
T Consensus 704 ~~aL~teidis~~y~~g--~ep~t~yrLVSmv~~~e~---~~~~~C~Aye-~Nrwvs~r~~~~~~e~iG~w~dvvr~c~e 777 (806)
T KOG1887|consen 704 TKALATEIDISRLYREG--LEPNTKYRLVSMVGNHEE---GEEYICFAYE-PNRWVSLRHEDSQGEVVGDWKDVVRFCGE 777 (806)
T ss_pred HHHHHhhhhHHHHhhhc--cCcCceeEEEEEeeeccc---cceEEEeecc-CCcchhhHHHHHHhhhccchHHHHHHHhc
Confidence 23344567776544322 234568999999977642 5799999987 67787 8999888877 5666653
Q ss_pred --CCeEEEEEEEcC
Q 005687 407 --QDAYILFYAKQG 418 (683)
Q Consensus 407 --~~AYiLfY~R~~ 418 (683)
..+-||||++..
T Consensus 778 ~~vrpeil~ye~~~ 791 (806)
T KOG1887|consen 778 RKVRPEILFYEAQQ 791 (806)
T ss_pred ccccHHHHHHHHHH
Confidence 346777777643
No 44
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=91.10 E-value=0.16 Score=42.87 Aligned_cols=54 Identities=17% Similarity=0.191 Sum_probs=43.3
Q ss_pred hhhhcceeeEeeecCCCCCChhhhhhccCCCCCCcccccCC-----------CCCCCCCchhHHHhhhcCCCCcc
Q 005687 14 DLVFAREIVDEKTLDPSWSSPETLHDHLHPSNHPLTLTDLD-----------KDQNNDDDDDYEEIYRDTRPISS 77 (683)
Q Consensus 14 ~~~~~~~i~~ev~ld~~~~~~~~~k~~l~~~~~~~slt~v~-----------~~~~~~dd~d~~~i~~~~k~~~~ 77 (683)
.++|....+ +|+++++ .+...||.+++ ++|||| +|+.++|+..++.+ +.++++.
T Consensus 4 ~vk~~g~~~-~v~v~~~-~Tv~~lK~~i~------~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~--~i~~g~~ 68 (74)
T cd01813 4 IVKWGGQEY-SVTTLSE-DTVLDLKQFIK------TLTGVLPERQKLLGLKVKGKPAEDDVKISAL--KLKPNTK 68 (74)
T ss_pred EEEECCEEE-EEEECCC-CCHHHHHHHHH------HHHCCCHHHEEEEeecccCCcCCCCcCHHHc--CCCCCCE
Confidence 467888887 5888888 99999999999 999999 35678888888888 5555544
No 45
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=89.29 E-value=0.18 Score=49.48 Aligned_cols=47 Identities=15% Similarity=0.139 Sum_probs=30.6
Q ss_pred eEEEEeecCCCCCCcEEEEEEcCCCeEEEEeCCcceEeccccccCCCeEEEEEEEcC
Q 005687 362 YAIVEHMGSSPTCGHYFSYIRSSPDTWHRLNDSRVTRVEEEFVLSQDAYILFYAKQG 418 (683)
Q Consensus 362 ~AVV~H~G~s~~sGHY~ayvr~~~~~Wy~fNDs~Vs~vs~eeV~s~~AYiLfY~R~~ 418 (683)
.|-|.-.|. ||.+.+++. .+.||.+||+.+.+....-. -+|.|+.-+
T Consensus 130 ~agi~~~g~----~Havfa~~t-s~gWy~iDDe~~y~~tPdp~-----~VLvfvp~D 176 (193)
T PF05408_consen 130 HAGIFLKGQ----EHAVFACVT-SDGWYAIDDEDFYPWTPDPS-----DVLVFVPYD 176 (193)
T ss_dssp EEEEEEEST----TEEEEEEEE-TTCEEEEETTEEEE----GG-----GEEEEEESS
T ss_pred hhHheecCC----cceEEEEEe-eCcEEEecCCeeeeCCCChh-----heEEEcccC
Confidence 444555554 899999887 56799999999998865321 236676643
No 46
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=68.50 E-value=9 Score=37.92 Aligned_cols=22 Identities=41% Similarity=0.750 Sum_probs=15.7
Q ss_pred CccccCCCccchHHHHHHHhCC
Q 005687 108 AGLENLGNTCFINAILQCFTHT 129 (683)
Q Consensus 108 ~GL~NlGNTCYlNSvLQ~L~~~ 129 (683)
.|+.|.+|+||+||++|.+...
T Consensus 34 t~~PN~~dnCWlNaL~QL~~~~ 55 (193)
T PF05408_consen 34 TGLPNNHDNCWLNALLQLFRYV 55 (193)
T ss_dssp E----SSSTHHHHHHHHHHHHH
T ss_pred ecCCCCCCChHHHHHHHHHHHc
Confidence 5999999999999999998643
No 47
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=65.80 E-value=11 Score=40.80 Aligned_cols=74 Identities=19% Similarity=0.175 Sum_probs=36.6
Q ss_pred ccccCCCccchHHHHHHHhCCHH-HHHHHHhCCCCCCCCCCCchhhHHHHHHHHHHHHHhcCCCcccchhHHhhhhhccc
Q 005687 109 GLENLGNTCFINAILQCFTHTLP-LVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSPRKLVDNLNYISS 187 (683)
Q Consensus 109 GL~NlGNTCYlNSvLQ~L~~~p~-fr~~L~~~~~~~~~~~~~~~~~ll~~L~~l~~~~~~ss~~~i~P~~fl~~L~~~~~ 187 (683)
=|.=.-|+||+||++=.|=++.. |+- . .+.+++.... .+ +|..|...+-....
T Consensus 104 ~Lkq~dNNCwVna~~~~LQ~~~~~f~~------------------~---~l~~aw~~f~--~G---~~~~fVa~~Ya~~~ 157 (320)
T PF08715_consen 104 VLKQSDNNCWVNAACLQLQALKIKFKS------------------P---GLDEAWNEFK--AG---DPAPFVAWCYASTN 157 (320)
T ss_dssp EE---TTTHHHHHHHHHHTTST--BSS------------------H---HHHHHHHHHH--TT-----HHHHHHHHHHTT
T ss_pred EEEecCCCcHHHHHHHHHHhcCCccCC------------------H---HHHHHHHHHh--CC---ChHHHHHHHHHHcC
Confidence 35555799999999876654421 110 0 1222222222 22 45666665544322
Q ss_pred cccccccccHHHHHHHHHHHHH
Q 005687 188 FFQRYQQEDAHEFLQCLLDRLE 209 (683)
Q Consensus 188 ~f~~~~QQDA~Efl~~LLd~L~ 209 (683)
...|+.-||+++|..||..++
T Consensus 158 -~~~G~~gDa~~~L~~ll~~~~ 178 (320)
T PF08715_consen 158 -AKKGDPGDAEYVLSKLLKDAD 178 (320)
T ss_dssp ---TTS---HHHHHHHHHTTB-
T ss_pred -CCCCCCcCHHHHHHHHHHhcc
Confidence 456788899999999997664
No 48
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=60.72 E-value=7 Score=32.02 Aligned_cols=36 Identities=19% Similarity=0.413 Sum_probs=28.3
Q ss_pred CcccccccCccceeeeeeeee--cCCceeEEEEeeeee
Q 005687 288 TKFTCEKCKEQVSVEKQLMLD--KVPSVAAFHLKRFKT 323 (683)
Q Consensus 288 n~y~C~~C~~~~~a~K~~~I~--~LP~vLiIhLkRF~~ 323 (683)
+.+.|++|+...-.++++... .+.+++-||.++|-.
T Consensus 3 ~~~kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~~ 40 (68)
T COG3478 3 NAFKCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFIV 40 (68)
T ss_pred ccccCCCcCCcchhhceeeccCCCcceeEEecccEEEE
Confidence 457899999987777776553 688999999999843
No 49
>PF14353 CpXC: CpXC protein
Probab=59.40 E-value=5.5 Score=37.01 Aligned_cols=49 Identities=20% Similarity=0.450 Sum_probs=25.0
Q ss_pred EEEecCCCCcccccccceeeeeeecccCChHHHHHhhhhhccccCCCCcccccccCccce
Q 005687 241 KLQCCNCGSCSDTYEPLIDLSLEIEDVGSLGSALESFTKLEKIEDPETKFTCEKCKEQVS 300 (683)
Q Consensus 241 ~i~C~~Cg~~S~~~E~F~~LsL~I~~~~sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~ 300 (683)
+++|+.|++.... +.+. ++.......|.+.| +. +.-+.+.|++||....
T Consensus 1 ~itCP~C~~~~~~-~v~~--~I~~~~~p~l~e~i---l~-----g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 1 EITCPHCGHEFEF-EVWT--SINADEDPELKEKI---LD-----GSLFSFTCPSCGHKFR 49 (128)
T ss_pred CcCCCCCCCeeEE-EEEe--EEcCcCCHHHHHHH---Hc-----CCcCEEECCCCCCcee
Confidence 3689999973322 1222 22222222333332 22 2233499999998753
No 50
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=48.65 E-value=14 Score=30.94 Aligned_cols=50 Identities=14% Similarity=0.102 Sum_probs=35.8
Q ss_pred cceeeEeeecCCCCCChhhhhhccCCCCCCcccccCC--------CCCCCCCchhHHHhhhcCCCCcc
Q 005687 18 AREIVDEKTLDPSWSSPETLHDHLHPSNHPLTLTDLD--------KDQNNDDDDDYEEIYRDTRPISS 77 (683)
Q Consensus 18 ~~~i~~ev~ld~~~~~~~~~k~~l~~~~~~~slt~v~--------~~~~~~dd~d~~~i~~~~k~~~~ 77 (683)
+.+++ +++++++ .+...+|.+++ +.+|+| +|..++|+..++.. +..++..
T Consensus 6 ~g~~~-~l~v~~~-~TV~~lK~~i~------~~~gip~~~q~L~~~G~~L~d~~tL~~~--~i~~g~~ 63 (76)
T cd01800 6 NGQML-NFTLQLS-DPVSVLKVKIH------EETGMPAGKQKLQYEGIFIKDSNSLAYY--NLANGTI 63 (76)
T ss_pred CCeEE-EEEECCC-CcHHHHHHHHH------HHHCCCHHHEEEEECCEEcCCCCcHHHc--CCCCCCE
Confidence 44433 3667777 78999999999 889999 57778888777766 4444433
No 51
>PF02099 Josephin: Josephin; InterPro: IPR006155 Human genes containing triplet repeats can markedly expand in length, leading to neuropsychiatric disease. Expansion of triplet repeats explains the phenomenon of anticipation, i.e. the increasing severity or earlier age of onset in successive generations in a pedigree []. A novel gene containing CAG repeats has been identified and mapped to chromosome 14q32.1, the genetic locus for Machado-Joseph disease (MJD). Normally, the gene contains 13-36 CAG repeats, but most clinically diagnosed patients and all affected members of a family with the clinical and pathological diagnosis of MJD show expansion of the repeat number, from 68-79 []. Similar abnormalities in related genes may give rise to diseases similar to MJD. MJD is a neurodegenerative disorder characterised by cerebellar ataxia, pyramidal and extra-pyramidal signs, peripheral nerve palsy, external ophtalmoplegia, facial and lingual fasciculation and bulging. The disease is autosomal dominant, with late onset of symptoms, generally after the fourth decade.; GO: 0008242 omega peptidase activity; PDB: 3O65_G 1YZB_A 2JRI_A 2DOS_A 2AGA_A.
Probab=41.49 E-value=32 Score=33.49 Aligned_cols=33 Identities=12% Similarity=0.354 Sum_probs=25.8
Q ss_pred EeEEEEeecCCCCCCcEEEEEEcCCCeEEEEeCCcceEe
Q 005687 361 LYAIVEHMGSSPTCGHYFSYIRSSPDTWHRLNDSRVTRV 399 (683)
Q Consensus 361 L~AVV~H~G~s~~sGHY~ayvr~~~~~Wy~fNDs~Vs~v 399 (683)
..|+|++.+. |++|..|- +|.||.+|-..-.+.
T Consensus 99 ~~gfI~N~~~-----HWf~iRki-~~~wyNLDS~l~~P~ 131 (157)
T PF02099_consen 99 EFGFICNLSR-----HWFAIRKI-GGQWYNLDSKLKEPE 131 (157)
T ss_dssp SSEEEEECTT-----EEEEEEEE-TTEEEEECTTTSS-E
T ss_pred ceEEEeccCc-----ceEEEEee-CCeeEeccCCCCCCc
Confidence 6789999664 99999776 899999997655433
No 52
>PHA02998 RNA polymerase subunit; Provisional
Probab=37.86 E-value=36 Score=33.65 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=13.3
Q ss_pred eeecceEEE-EEEEecCCCC
Q 005687 231 QRVFGGCLI-SKLQCCNCGS 249 (683)
Q Consensus 231 ~~lF~G~l~-s~i~C~~Cg~ 249 (683)
+.+|...-. ..+.|..|++
T Consensus 132 ~~yfnvlpkkt~v~CPkCg~ 151 (195)
T PHA02998 132 DDYFNVLDEKYNTPCPNCKS 151 (195)
T ss_pred hhheeccCcccCCCCCCCCC
Confidence 456655444 6788999996
No 53
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=33.58 E-value=43 Score=27.14 Aligned_cols=39 Identities=15% Similarity=0.319 Sum_probs=28.9
Q ss_pred EeeecCCCCCChhhhhhccCCCCCCcccccCC--------CCCCCCCchhHHHh
Q 005687 23 DEKTLDPSWSSPETLHDHLHPSNHPLTLTDLD--------KDQNNDDDDDYEEI 68 (683)
Q Consensus 23 ~ev~ld~~~~~~~~~k~~l~~~~~~~slt~v~--------~~~~~~dd~d~~~i 68 (683)
.+++++++ .+-..+|.+++ ..+|+| +|..+.|+..++..
T Consensus 12 ~~i~v~~~-~tv~~lK~~i~------~~~gi~~~~q~L~~~g~~l~d~~~L~~~ 58 (71)
T cd01812 12 HDLSISSQ-ATFGDLKKMLA------PVTGVEPRDQKLIFKGKERDDAETLDMS 58 (71)
T ss_pred EEEEECCC-CcHHHHHHHHH------HhhCCChHHeEEeeCCcccCccCcHHHc
Confidence 46778888 88999999999 888988 45556555444444
No 54
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=27.70 E-value=65 Score=19.61 Aligned_cols=15 Identities=7% Similarity=0.550 Sum_probs=11.2
Q ss_pred EEEEcCCCeEEEEeCC
Q 005687 379 SYIRSSPDTWHRLNDS 394 (683)
Q Consensus 379 ayvr~~~~~Wy~fNDs 394 (683)
.+++. ++.||.|++.
T Consensus 2 ~W~~~-~~~wYy~~~~ 16 (19)
T PF01473_consen 2 GWVQD-NGNWYYFDSD 16 (19)
T ss_dssp EEEEE-TTEEEEETTT
T ss_pred cCEEE-CCEEEEeCCC
Confidence 35666 6899999875
No 55
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=26.66 E-value=20 Score=41.32 Aligned_cols=29 Identities=17% Similarity=0.033 Sum_probs=24.9
Q ss_pred CCCccccCCCccchHHHHHHHhCCHHHHH
Q 005687 106 VGAGLENLGNTCFINAILQCFTHTLPLVQ 134 (683)
Q Consensus 106 ~p~GL~NlGNTCYlNSvLQ~L~~~p~fr~ 134 (683)
...|+.+.+|||+||+.+|.++.++.|.-
T Consensus 76 ~~~~~~~~~~~~~~~~g~~~~~~c~~~i~ 104 (492)
T KOG1867|consen 76 EHSGNKKHNNTIDVNNGLLYCFACPDFIY 104 (492)
T ss_pred cccccccccccceeehhhheeccCCcEee
Confidence 34799999999999999999999986543
No 56
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=24.08 E-value=54 Score=27.04 Aligned_cols=32 Identities=16% Similarity=0.410 Sum_probs=18.0
Q ss_pred ccccccCccceeeeeeeee--cCCceeEEEEeee
Q 005687 290 FTCEKCKEQVSVEKQLMLD--KVPSVAAFHLKRF 321 (683)
Q Consensus 290 y~C~~C~~~~~a~K~~~I~--~LP~vLiIhLkRF 321 (683)
|.|++|+...-..+++... .+-.++-|+.++|
T Consensus 1 y~C~KCg~~~~e~~~v~~tgg~~skiFdvq~~~f 34 (64)
T PF09855_consen 1 YKCPKCGNEEYESGEVRATGGGLSKIFDVQNKKF 34 (64)
T ss_pred CCCCCCCCcceecceEEccCCeeEEEEEecCcEE
Confidence 7899999875444443322 2334455555555
No 57
>PF10748 DUF2531: Protein of unknown function (DUF2531); InterPro: IPR019684 This entry represents proteins with unknown function and appears to be restricted to Enterobacteriaceae.
Probab=23.00 E-value=1.1e+02 Score=29.01 Aligned_cols=34 Identities=18% Similarity=0.525 Sum_probs=27.3
Q ss_pred eeEEEeEEEEeecCCCCCCcEEEEEEcCCCeEEEEeCCcc
Q 005687 357 LKYHLYAIVEHMGSSPTCGHYFSYIRSSPDTWHRLNDSRV 396 (683)
Q Consensus 357 ~~YeL~AVV~H~G~s~~sGHY~ayvr~~~~~Wy~fNDs~V 396 (683)
..++|.|||-. +++|++++..+.++|.+.=...+
T Consensus 34 s~WrlqGiVg~------~~~~~gwl~~p~g~W~Rv~~g~~ 67 (132)
T PF10748_consen 34 SQWRLQGIVGQ------GDRWIGWLQDPQGKWLRVRQGQV 67 (132)
T ss_pred ccceEccEECC------CCcEEEEEECCCCCeEEeccCCC
Confidence 47999999933 36999999999999998765543
No 58
>PF03292 Pox_P4B: Poxvirus P4B major core protein; InterPro: IPR004972 This family is the Poxvirus P4B major core protein. It is a precursor for one of the two most abundant structural components of the virion (major core proteins 4A and 4B).
Probab=21.44 E-value=1.2e+02 Score=35.45 Aligned_cols=79 Identities=14% Similarity=0.082 Sum_probs=44.3
Q ss_pred ceeEEEEeeeee----cCc-----eeeeecceeecCccccccccccCCCCCCcceeEEEeEEEEeec-CCCC--------
Q 005687 312 SVAAFHLKRFKT----DGS-----YVVKIDKHVEFPLELDLKPYTSGGQNSDVELKYHLYAIVEHMG-SSPT-------- 373 (683)
Q Consensus 312 ~vLiIhLkRF~~----d~~-----~~~Ki~~~V~FP~~LDLs~y~~~~~~~~~~~~YeL~AVV~H~G-~s~~-------- 373 (683)
.+|++-+.|=.. .+. ...-....+++..++-+. +..|+|.+.|||.- ....
T Consensus 479 GvLIfyVeRRq~k~~~~Gec~tg~rs~ind~pidv~q~i~in-----------gimyrL~SAVCYK~~d~~~d~C~~~di 547 (666)
T PF03292_consen 479 GVLIFYVERRQNKNTFSGECYTGFRSRINDSPIDVSQEITIN-----------GIMYRLKSAVCYKIGDQFFDGCNGNDI 547 (666)
T ss_pred ceEEEEEeehhccceeccccccchhhhhcCcccccccceeec-----------ceeeeeehhheeeccccccCCCCCCcc
Confidence 788888887422 111 111233344444444333 56899999999853 2221
Q ss_pred --CCcEEEEEEcCCCeEEEEeCCcceEecccc
Q 005687 374 --CGHYFSYIRSSPDTWHRLNDSRVTRVEEEF 403 (683)
Q Consensus 374 --sGHY~ayvr~~~~~Wy~fNDs~Vs~vs~ee 403 (683)
-|||+- ++.+. .||.||-..|-..+..+
T Consensus 548 flkG~ytI-lfTe~-Gpw~YDP~s~~s~~sr~ 577 (666)
T PF03292_consen 548 FLKGYYTI-LFTEM-GPWMYDPLSIFSKNSRE 577 (666)
T ss_pred eeceeEEE-EEecC-CceeeCchhhcCcchhH
Confidence 277764 45434 48889877665554433
No 59
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=20.69 E-value=53 Score=37.91 Aligned_cols=54 Identities=28% Similarity=0.348 Sum_probs=31.8
Q ss_pred cCCCCCCCCCCCCCCCCCCCccccCccchhcccccccccchhccCC---chhHHHHHHHHHhcCchhhHHHHHHHh
Q 005687 572 HPLTPPRSPSPDIHSGKPRETYQVPREHLKLESKGACKTQLERNGK---DLERQEAVRCIKKTMTGERYMKLMAAV 644 (683)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (683)
.=+|+||+|++ |-.|.+.--||-+++-.. .-.+.|+.|+-+.- ..||.+||++.
T Consensus 587 qF~WRPRPps~-----------------LS~e~~KkIkKnLKky~a~FeeqD~~e~~~AsrEl--vekrRqlm~~f 643 (698)
T KOG2314|consen 587 QFLWRPRPPSL-----------------LSEEKQKKIKKNLKKYSAQFEEQDRLEQSRASREL--VEKRRQLMEQF 643 (698)
T ss_pred hhccCCCCCcc-----------------cCHHHHHHHHHHHHHHHHHHhhhhhHhhhhhHHHH--HHHHHHHHHHH
Confidence 45899999998 333444444444444222 22455666665543 56777888876
Done!