Query 005687
Match_columns 683
No_of_seqs 401 out of 1556
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 04:37:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005687.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005687hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y6e_A Ubiquitin carboxyl-term 100.0 7.3E-64 2.5E-68 542.9 31.6 310 106-419 7-360 (367)
2 3nhe_A Ubiquitin carboxyl-term 100.0 8.5E-63 2.9E-67 527.7 29.4 311 105-420 7-345 (348)
3 2gfo_A Ubiquitin carboxyl-term 100.0 2.4E-62 8.4E-67 537.5 28.8 310 105-418 60-396 (396)
4 3i3t_A Ubiquitin carboxyl-term 100.0 9.1E-63 3.1E-67 528.8 22.2 308 107-420 3-353 (355)
5 1nb8_A Ubiquitin carboxyl-term 100.0 5.1E-61 1.8E-65 519.0 28.7 320 106-454 5-342 (353)
6 2ayn_A Ubiquitin carboxyl-term 100.0 3.2E-61 1.1E-65 527.8 27.2 310 104-420 11-396 (404)
7 1vjv_A Ubiquitin carboxyl-term 100.0 6.3E-60 2.2E-64 520.4 27.3 295 104-418 21-414 (415)
8 3mhs_A Ubiquitin carboxyl-term 100.0 4.3E-59 1.5E-63 522.7 26.2 310 106-418 140-474 (476)
9 2f1z_A Ubiquitin carboxyl-term 100.0 4.6E-58 1.6E-62 520.6 31.3 321 105-454 173-511 (522)
10 3ihp_A Ubiquitin carboxyl-term 100.0 5.4E-55 1.9E-59 518.6 25.6 296 104-418 341-853 (854)
11 2vhf_A Ubiquitin carboxyl-term 100.0 1.6E-33 5.6E-38 299.1 12.3 228 104-394 6-309 (374)
12 3mp2_A Non-structural protein 96.5 0.017 5.8E-07 56.9 11.4 34 363-400 162-195 (211)
13 2fe8_A PP1AB, ORF1AB, replicas 94.9 0.51 1.7E-05 49.3 15.3 37 362-401 260-296 (315)
14 3shq_A UBLCP1; phosphatase, hy 84.6 0.25 8.4E-06 52.0 0.9 81 14-104 9-103 (320)
15 1qmy_A Protease, leader protea 70.2 1.8 6.3E-05 39.6 2.0 37 361-402 109-145 (167)
16 1wgg_A Ubiquitin carboxyl-term 68.9 1.6 5.6E-05 37.2 1.3 53 15-77 12-72 (96)
17 2dzm_A FAS-associated factor 1 65.7 1.7 5.9E-05 37.6 0.9 52 16-77 15-75 (100)
18 2lxa_A Ubiquitin-like protein 42.7 9.6 0.00033 31.9 1.7 43 19-68 12-63 (87)
19 1v5t_A 8430435I17RIK protein; 41.4 9.9 0.00034 31.7 1.6 53 15-77 12-76 (90)
20 1v86_A DNA segment, CHR 7, way 35.8 21 0.00072 30.0 2.8 51 16-77 23-81 (95)
21 3o65_A Putative ataxin-3-like 32.4 58 0.002 31.4 5.5 55 361-421 110-172 (191)
22 1qmy_A Protease, leader protea 27.1 70 0.0024 29.3 4.7 31 107-137 13-44 (167)
23 4a20_A Ubiquitin-like protein 25.2 24 0.00083 30.1 1.3 43 19-68 30-81 (98)
24 2oxg_Z SOXZ protein; immunoglo 22.8 1.3E+02 0.0045 26.0 5.7 56 357-418 18-82 (108)
25 2kk8_A Uncharacterized protein 22.0 33 0.0011 28.1 1.5 38 24-68 24-70 (84)
26 1v8h_A Sulfur oxidation protei 21.8 1.5E+02 0.0051 25.6 5.8 56 357-418 17-81 (107)
27 3a43_A HYPD, hydrogenase nicke 20.9 67 0.0023 29.1 3.5 17 239-255 68-84 (139)
28 2kd0_A LRR repeats and ubiquit 20.5 23 0.00078 29.1 0.2 38 24-68 25-70 (85)
No 1
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=7.3e-64 Score=542.94 Aligned_cols=310 Identities=28% Similarity=0.486 Sum_probs=268.8
Q ss_pred CCCccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCCC---CCCCchhhHHHHHHHHHHHHHhcCCCcccchhHHhhh
Q 005687 106 VGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPC---DGATEGFCVICALRDHIELSLASSGKVLSPRKLVDNL 182 (683)
Q Consensus 106 ~p~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~---~~~~~~~~ll~~L~~l~~~~~~ss~~~i~P~~fl~~L 182 (683)
.++||.|+||||||||+||+|+++|+|+++|+...+.... .......+++++|+.+|..++......++|..|+.++
T Consensus 7 g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~~~l 86 (367)
T 2y6e_A 7 GLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFKTQV 86 (367)
T ss_dssp TCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHHHHHH
T ss_pred CCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHHHHHHHH
Confidence 3589999999999999999999999999999875432211 1112234788899999998887777899999999999
Q ss_pred hhccccccccccccHHHHHHHHHHHHHHhhccCCCCcc-----cc---------------ccCCCccceeecceEEEEEE
Q 005687 183 NYISSFFQRYQQEDAHEFLQCLLDRLESCCLDSKTKDE-----SL---------------SSQGDNIVQRVFGGCLISKL 242 (683)
Q Consensus 183 ~~~~~~f~~~~QQDA~Efl~~LLd~L~~e~~~~~~~~~-----~~---------------~~~~~s~I~~lF~G~l~s~i 242 (683)
++..+.|.+++||||||||.+|||.|++++........ .. .....++|.++|+|++.+++
T Consensus 87 ~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~l~s~~ 166 (367)
T 2y6e_A 87 GRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTL 166 (367)
T ss_dssp HHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEEEEEEE
T ss_pred HHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCccccccCcEEeeeE
Confidence 99999999999999999999999999998754322110 00 01246789999999999999
Q ss_pred EecCCCCcccccccceeeeeeeccc-------------------CChHHHHHhhhhhccccCCCCcccccccCccceeee
Q 005687 243 QCCNCGSCSDTYEPLIDLSLEIEDV-------------------GSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEK 303 (683)
Q Consensus 243 ~C~~Cg~~S~~~E~F~~LsL~I~~~-------------------~sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K 303 (683)
+|..|++++.++|+|++|+|+|+.. .+|++||+.|+..|.+++ +++|.|++|++.+.+.|
T Consensus 167 ~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~-~~~~~C~~C~~~~~a~K 245 (367)
T 2y6e_A 167 VCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGE-HDPWYCPNCKKHQQATK 245 (367)
T ss_dssp ECTTTCCEEEEEEEESSEEEECCC-------------------CEEHHHHHHHHTSCEECCC--CCEEETTTTEEECCEE
T ss_pred EeCCCCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHHHHHhcccccCCC-CCCccCCCCCCCceEEE
Confidence 9999999999999999999999742 489999999999999964 78899999999999999
Q ss_pred eeeeecCCceeEEEEeeeeecCceeeeecceeecCc-cccccccccCCCCCCcceeEEEeEEEEeecCCCCCCcEEEEEE
Q 005687 304 QLMLDKVPSVAAFHLKRFKTDGSYVVKIDKHVEFPL-ELDLKPYTSGGQNSDVELKYHLYAIVEHMGSSPTCGHYFSYIR 382 (683)
Q Consensus 304 ~~~I~~LP~vLiIhLkRF~~d~~~~~Ki~~~V~FP~-~LDLs~y~~~~~~~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr 382 (683)
+..|++||+||+|||+||.++.....|+.+.|.||. .|||.+|+..... ....|+|+|||+|.|. +++|||+||||
T Consensus 246 ~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~--~~~~Y~L~avv~H~G~-~~~GHY~a~~~ 322 (367)
T 2y6e_A 246 KFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSA--RPYVYDLIAVSNHYGA-MGVGHYTAYAK 322 (367)
T ss_dssp EEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCSSS--CCCEEEEEEEEEEECS-SSSCEEEEEEE
T ss_pred EEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhhccCCCC--CCceEEEEEEeecCCC-CCCCeeeEEEE
Confidence 999999999999999999998777889999999997 7999999976532 3579999999999996 89999999999
Q ss_pred cC-CCeEEEEeCCcceEeccccccCCCeEEEEEEEcCC
Q 005687 383 SS-PDTWHRLNDSRVTRVEEEFVLSQDAYILFYAKQGT 419 (683)
Q Consensus 383 ~~-~~~Wy~fNDs~Vs~vs~eeV~s~~AYiLfY~R~~~ 419 (683)
.. +++||+|||+.|+++++++|.+..||||||+|++.
T Consensus 323 ~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~ 360 (367)
T 2y6e_A 323 NKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDD 360 (367)
T ss_dssp CTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEECCC
T ss_pred cCCCCeEEEECCCCceECCHHHcCCCCcEEEEEEEcCC
Confidence 86 78999999999999999999999999999999875
No 2
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=8.5e-63 Score=527.67 Aligned_cols=311 Identities=34% Similarity=0.574 Sum_probs=269.7
Q ss_pred CCCCccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCCC-CCCCchhhHHHHHHHHHHHHH-hcCCCcccchhHHhhh
Q 005687 105 GVGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPC-DGATEGFCVICALRDHIELSL-ASSGKVLSPRKLVDNL 182 (683)
Q Consensus 105 ~~p~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~-~~~~~~~~ll~~L~~l~~~~~-~ss~~~i~P~~fl~~L 182 (683)
..++||.|+||||||||+||+|+++|+|+++++...+.... .......+++++|..+|..++ ......++|..|+.++
T Consensus 7 ~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~p~~~~~~l 86 (348)
T 3nhe_A 7 QGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFKTQI 86 (348)
T ss_dssp CSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSSCCTTHHHHHHHHHHHHHHTTCCTTCEECCHHHHHHH
T ss_pred CCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhccCCCcccHHHHHHHHHHHHHHcCCCCCccCHHHHHHHH
Confidence 34589999999999999999999999999999875332211 123345789999999998777 4566799999999999
Q ss_pred hhccccccccccccHHHHHHHHHHHHHHhhccCCCCcccc--------------------ccCCCccceeecceEEEEEE
Q 005687 183 NYISSFFQRYQQEDAHEFLQCLLDRLESCCLDSKTKDESL--------------------SSQGDNIVQRVFGGCLISKL 242 (683)
Q Consensus 183 ~~~~~~f~~~~QQDA~Efl~~LLd~L~~e~~~~~~~~~~~--------------------~~~~~s~I~~lF~G~l~s~i 242 (683)
+...+.|.+++||||+|||.+||+.|++++.......... .....++|.++|+|++.+++
T Consensus 87 ~~~~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~ 166 (348)
T 3nhe_A 87 QRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSL 166 (348)
T ss_dssp HHHSGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCCCHHHHHHCEEEEEEE
T ss_pred HHhhhhhCCCCccCHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHhhcCCccccccceEEEEEE
Confidence 9999999999999999999999999999886532211110 02345789999999999999
Q ss_pred EecCCCCcccccccceeeeeeecccC----ChHHHHHhhhhhccccCCCCcccccccCccceeeeeeeeecCCceeEEEE
Q 005687 243 QCCNCGSCSDTYEPLIDLSLEIEDVG----SLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHL 318 (683)
Q Consensus 243 ~C~~Cg~~S~~~E~F~~LsL~I~~~~----sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K~~~I~~LP~vLiIhL 318 (683)
+|..|++.+.+.|+|+.|+|+|+... +|+++|+.|+..|.+++ +++|.|++|+..+.+.|+..|.++|+||+|||
T Consensus 167 ~C~~C~~~s~~~e~f~~LsL~i~~~~~~~~sl~~~L~~~~~~e~l~~-~~~~~C~~C~~~~~~~k~~~i~~lP~vL~i~l 245 (348)
T 3nhe_A 167 TCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDG-DEKPTCCRCRGRKRCIKKFSIQRFPKILVLHL 245 (348)
T ss_dssp EETTTCCEEEEEEEESSEEECCCSSCSSCEEHHHHHHHHHSCEEECG-GGCCEETTTTEECCEEEEEEEEECCSEEEEEE
T ss_pred EcCCCCCEeeeeccceEEeeeCCCcccCCCCHHHHHHHhcCceEecC-CCceECCCCCCcccEEEEEEeecCCceEEEEE
Confidence 99999999999999999999998643 99999999999999864 78899999999999999999999999999999
Q ss_pred eeeeecCceeeeecceeecCc-cccccccccCCCCCCcceeEEEeEEEEeecCCCCCCcEEEEEEcC-CCeEEEEeCCcc
Q 005687 319 KRFKTDGSYVVKIDKHVEFPL-ELDLKPYTSGGQNSDVELKYHLYAIVEHMGSSPTCGHYFSYIRSS-PDTWHRLNDSRV 396 (683)
Q Consensus 319 kRF~~d~~~~~Ki~~~V~FP~-~LDLs~y~~~~~~~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr~~-~~~Wy~fNDs~V 396 (683)
+||.++.....|+...|.||. .|||.+|+.... ....|+|+|||+|.| ++++|||+||||.. +++||+|||+.|
T Consensus 246 kRf~~~~~~~~K~~~~v~fp~~~ldl~~~~~~~~---~~~~Y~L~avv~H~G-~~~~GHY~~~~~~~~~~~W~~~nD~~V 321 (348)
T 3nhe_A 246 KRFSESRIRTSKLTTFVNFPLRDLDLREFASENT---NHAVYNLYAVSNHSG-TTMGGHYTAYCRSPGTGEWHTFNDSSV 321 (348)
T ss_dssp CCBCCCSSCCCBCCCCEECCSSCEECGGGBCTTC---CCCEEEEEEEEEEEE-CSSCEEEEEEEECTTTCCEEEEETTEE
T ss_pred EcccccCCceeecCcceeccCCcCCHhhhcCCCC---CCCcEEEEEEEEccC-CCCCcccEEEEccCCCCcEEEEeCCCc
Confidence 999998877889999999995 799999996553 356899999999999 58899999999985 789999999999
Q ss_pred eEeccccccCCCeEEEEEEEcCCc
Q 005687 397 TRVEEEFVLSQDAYILFYAKQGTE 420 (683)
Q Consensus 397 s~vs~eeV~s~~AYiLfY~R~~~~ 420 (683)
+++++++|.+.+||||||+|++.+
T Consensus 322 ~~v~~~~v~~~~aY~LfY~r~~~~ 345 (348)
T 3nhe_A 322 TPMSSSQVRTSDAYLLFYELASPP 345 (348)
T ss_dssp EEECGGGTCCTTEEEEEEEECC--
T ss_pred eECCHHHcCCCCceEEEEEecCCC
Confidence 999999999999999999998753
No 3
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=2.4e-62 Score=537.47 Aligned_cols=310 Identities=30% Similarity=0.517 Sum_probs=267.5
Q ss_pred CCCCccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCC---CCCCCCchhhHHHHHHHHHHHHHhcCCCcccchhHHhh
Q 005687 105 GVGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPR---PCDGATEGFCVICALRDHIELSLASSGKVLSPRKLVDN 181 (683)
Q Consensus 105 ~~p~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~---~~~~~~~~~~ll~~L~~l~~~~~~ss~~~i~P~~fl~~ 181 (683)
..++||.|+||||||||+||||+++|+|+++|+...... .........++.++|..++..++......++|..|+.+
T Consensus 60 ~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~i~P~~f~~~ 139 (396)
T 2gfo_A 60 PALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKIT 139 (396)
T ss_dssp TTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCEEEECCHHHHHH
T ss_pred CCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcCCCceECHHHHHHH
Confidence 346899999999999999999999999999998743211 01111223467788899998888777789999999999
Q ss_pred hhhccccccccccccHHHHHHHHHHHHHHhhccCCCCcccc--------------------ccCCCccceeecceEEEEE
Q 005687 182 LNYISSFFQRYQQEDAHEFLQCLLDRLESCCLDSKTKDESL--------------------SSQGDNIVQRVFGGCLISK 241 (683)
Q Consensus 182 L~~~~~~f~~~~QQDA~Efl~~LLd~L~~e~~~~~~~~~~~--------------------~~~~~s~I~~lF~G~l~s~ 241 (683)
++...+.|.+++||||+|||.+|||.|++++.......... .....++|.++|+|++.++
T Consensus 140 l~~~~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~l~s~ 219 (396)
T 2gfo_A 140 IGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKST 219 (396)
T ss_dssp HHHHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHHHHHHCCSHHHHHHCEEEEEE
T ss_pred HHHhchhhcCCCCCChHHHHHHHHHHHHHHHhhhccccccccccccccchhhHHHHHHHHhhhccCCccchhhCcEEEEE
Confidence 99999999999999999999999999999876532111000 0124678999999999999
Q ss_pred EEecCCCCcccccccceeeeeeecc--cCChHHHHHhhhhhccccCCCCcccccccCccceeeeeeeeecCCceeEEEEe
Q 005687 242 LQCCNCGSCSDTYEPLIDLSLEIED--VGSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLK 319 (683)
Q Consensus 242 i~C~~Cg~~S~~~E~F~~LsL~I~~--~~sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K~~~I~~LP~vLiIhLk 319 (683)
++|..|++++.+.|+|++|+|+|+. ..+|++||+.|+..|.+++ +++|.|++|+..+.+.|+..|++||+||+|||+
T Consensus 220 i~C~~C~~~s~~~e~f~~LsL~ip~~~~~sL~~~L~~f~~~E~l~~-~n~~~C~~C~~~~~a~k~~~i~~lP~vLiihLk 298 (396)
T 2gfo_A 220 VQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTD-NNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLK 298 (396)
T ss_dssp EEETTTCCEEEEEEEESSEEECCSCSSEEEHHHHHHHHTSCEEECS-TTCEEETTTTEEECEEEEEEEEECCSEEEEEEC
T ss_pred EEeCCCCceecccccceeeeecccccccCCHHHHHHHhCCcccccC-CcccccCCcccccceEEEEEEecCCcEEEEEec
Confidence 9999999999999999999999986 4589999999999999975 788999999999999999999999999999999
Q ss_pred eeeecCceeeeecceeecCc-cccccccccCCCCCCcceeEEEeEEEEeecCCCCCCcEEEEEEcC-CCeEEEEeCCcce
Q 005687 320 RFKTDGSYVVKIDKHVEFPL-ELDLKPYTSGGQNSDVELKYHLYAIVEHMGSSPTCGHYFSYIRSS-PDTWHRLNDSRVT 397 (683)
Q Consensus 320 RF~~d~~~~~Ki~~~V~FP~-~LDLs~y~~~~~~~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr~~-~~~Wy~fNDs~Vs 397 (683)
||.++.....|+...|.||. .|||.+|+..... ....|+|+|||+|.| ++++|||+||||.. +++||+|||+.|+
T Consensus 299 RF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~--~~~~Y~L~avv~H~G-~~~~GHY~a~v~~~~~~~W~~fnD~~V~ 375 (396)
T 2gfo_A 299 RFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKN--NLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVS 375 (396)
T ss_dssp CEEECSSSEEECCCEEECCSSCBCCGGGBCSCCS--SCCCBEEEEEEEEES-CTTTCEEEEEEEETTTTEEEEEETTEEE
T ss_pred ceeccCccceecCceEecchhhccccccccCCCC--CCceEEEEEEEEecC-CCCCCceEEEEcCCCCCCEEEEeCCCeE
Confidence 99999877889999999996 6999999976432 356899999999999 79999999999985 7899999999999
Q ss_pred EeccccccCCCeEEEEEEEcC
Q 005687 398 RVEEEFVLSQDAYILFYAKQG 418 (683)
Q Consensus 398 ~vs~eeV~s~~AYiLfY~R~~ 418 (683)
+|++++|.+..||||||+|.+
T Consensus 376 ~v~~~~v~~~~aYiLfY~r~~ 396 (396)
T 2gfo_A 376 DISVSSVKSSAAYILFYTSLG 396 (396)
T ss_dssp ECCHHHHSCTTEEEEEEECC-
T ss_pred ECCHHHcCCCCceEEEEEEcC
Confidence 999999999999999999864
No 4
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=100.00 E-value=9.1e-63 Score=528.84 Aligned_cols=308 Identities=33% Similarity=0.541 Sum_probs=260.2
Q ss_pred CCccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCchhhHHHHHHHHHHHHHhcCC-CcccchhHHhhhhhc
Q 005687 107 GAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSG-KVLSPRKLVDNLNYI 185 (683)
Q Consensus 107 p~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~ll~~L~~l~~~~~~ss~-~~i~P~~fl~~L~~~ 185 (683)
.+||.|+||||||||+||+|+++|+|+++++...............+++++|+.+|..++.... ..++|..|+.+|+..
T Consensus 3 ~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~v~p~~~~~~l~~~ 82 (355)
T 3i3t_A 3 HVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHPDSCEAVNPTRFRAVFQKY 82 (355)
T ss_dssp CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC------CHHHHHHHHHHHHTSSCSSCCCBCCHHHHHHHHHH
T ss_pred CcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcCCCCchhHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh
Confidence 4899999999999999999999999999998753321111122345788999999987766543 789999999999999
Q ss_pred cccccccccccHHHHHHHHHHHHHHhhccCCCCcccc-----------------------------------ccCCCccc
Q 005687 186 SSFFQRYQQEDAHEFLQCLLDRLESCCLDSKTKDESL-----------------------------------SSQGDNIV 230 (683)
Q Consensus 186 ~~~f~~~~QQDA~Efl~~LLd~L~~e~~~~~~~~~~~-----------------------------------~~~~~s~I 230 (683)
.+.|.+++||||+|||.+|||.|++++.......... .....++|
T Consensus 83 ~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i 162 (355)
T 3i3t_A 83 VPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDSKI 162 (355)
T ss_dssp CGGGCSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHHHHCCSHH
T ss_pred ChhhCCCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCccccccccccCCCCCHHHHHHHHHHHhhhccCCcc
Confidence 9999999999999999999999999876532111000 01245779
Q ss_pred eeecceEEEEEEEecCCCCcccccccceeeeeeeccc------CChHHHHHhhhhhccccCCCCcccccccCccceeeee
Q 005687 231 QRVFGGCLISKLQCCNCGSCSDTYEPLIDLSLEIEDV------GSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQ 304 (683)
Q Consensus 231 ~~lF~G~l~s~i~C~~Cg~~S~~~E~F~~LsL~I~~~------~sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K~ 304 (683)
.++|+|++.+.++|..|++.+.+.|+|++|+|+|+.. .+|+++|+.|+..|.+++ +++|.|++|++++.+.|+
T Consensus 163 ~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~~~~~sl~~~L~~~~~~e~l~~-~n~~~C~~C~~~~~a~k~ 241 (355)
T 3i3t_A 163 VDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELES-ENAPVCDRCRQKTRSTKK 241 (355)
T ss_dssp HHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC-------CBHHHHHHHHHCCEEECG-GGCCCCSSSCCCCCEEEE
T ss_pred cccccEEEEeeEEeCCCCCCceeeccceeecccCCccccccCccCHHHHHHHhCCccccCC-CCCeeCCCCCCccceEEE
Confidence 9999999999999999999999999999999999753 499999999999999975 788999999999999999
Q ss_pred eeeecCCceeEEEEeeeeecCceeeeecceeecCc-cccccccccCCCCCCcceeEEEeEEEEeecCCCCCCcEEEEEEc
Q 005687 305 LMLDKVPSVAAFHLKRFKTDGSYVVKIDKHVEFPL-ELDLKPYTSGGQNSDVELKYHLYAIVEHMGSSPTCGHYFSYIRS 383 (683)
Q Consensus 305 ~~I~~LP~vLiIhLkRF~~d~~~~~Ki~~~V~FP~-~LDLs~y~~~~~~~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr~ 383 (683)
..|.++|+||+|||+||.++.....|+...|.||. .|||.+|+.... ....|+|+|||+|.| ++++|||+||+|.
T Consensus 242 ~~i~~lP~vL~i~lkRF~~~~~~~~K~~~~v~fp~~~l~l~~~~~~~~---~~~~Y~L~avv~H~G-~~~~GHY~~~~~~ 317 (355)
T 3i3t_A 242 LTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASDKA---GSPVYQLYALCNHSG-SVHYGHYTALCRC 317 (355)
T ss_dssp EEEEECCSEEEEEECCEECCSSCCEECCCCCBCCSSCEECGGGBC-------CCEEEEEEEEEEEE-ETTEEEEEEEEEE
T ss_pred EEcccCChheEEEhhheecCCCCceECCcceeCCccccCchhhccCCC---CCcceEEEEEEEecC-CCCCCeEEEEEEc
Confidence 99999999999999999999888899999999995 599999986542 356899999999999 5999999999998
Q ss_pred CCCeEEEEeCCcceEeccccccCCCeEEEEEEEcCCc
Q 005687 384 SPDTWHRLNDSRVTRVEEEFVLSQDAYILFYAKQGTE 420 (683)
Q Consensus 384 ~~~~Wy~fNDs~Vs~vs~eeV~s~~AYiLfY~R~~~~ 420 (683)
.+.||+|||+.|+++++++|.+.+||||||+|.+.|
T Consensus 318 -~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~~~~ 353 (355)
T 3i3t_A 318 -QTGWHVYNDSRVSPVSENQVASSEGYVLFYQLMQEP 353 (355)
T ss_dssp -TTEEEEEETTEEEEECHHHHHTSCCSEEEEEEC---
T ss_pred -CCeEEEEcCCCcEECCHHHcCCCCcEEEEEEeccCC
Confidence 577999999999999999999999999999998653
No 5
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=100.00 E-value=5.1e-61 Score=519.04 Aligned_cols=320 Identities=23% Similarity=0.398 Sum_probs=267.1
Q ss_pred CCCccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCchhhHHHHHHHHHHHHHhcCCCcccchhHHhhhhhc
Q 005687 106 VGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSPRKLVDNLNYI 185 (683)
Q Consensus 106 ~p~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~ll~~L~~l~~~~~~ss~~~i~P~~fl~~L~~~ 185 (683)
.++||.|+||||||||+||+|+++|+|+++++...... .....++.++|+.+|..++. +...+.|..|+.++++
T Consensus 5 g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~~----~~~~~~~~~~l~~lf~~l~~-~~~~~~~~~l~~~~~~- 78 (353)
T 1nb8_A 5 GYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG----DDSSKSVPLALQRVFYELQH-SDKPVGTKKLTKSFGW- 78 (353)
T ss_dssp SCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCTT----SCTTTCHHHHHHHHHHHHHH-CSSCBCCHHHHHHHTC-
T ss_pred CCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCCC----CcccccHHHHHHHHHHHHhh-cCCCCCCHHHHhhcCC-
Confidence 35899999999999999999999999999998653221 22334688899999986665 4568899999988864
Q ss_pred cccccccccccHHHHHHHHHHHHHHhhccCCCCccccccCCCccceeecceEEEEEEEecCCCCcccccccceeeeeeec
Q 005687 186 SSFFQRYQQEDAHEFLQCLLDRLESCCLDSKTKDESLSSQGDNIVQRVFGGCLISKLQCCNCGSCSDTYEPLIDLSLEIE 265 (683)
Q Consensus 186 ~~~f~~~~QQDA~Efl~~LLd~L~~e~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C~~Cg~~S~~~E~F~~LsL~I~ 265 (683)
+.|.+++||||+|||.+||+.|++++.. ....++|.++|+|++.+.++|..|++.+.+.|+|++|+|+|+
T Consensus 79 -~~~~~~~QqDA~EFl~~LLd~L~~~~~~---------~~~~s~i~~~F~g~~~~~i~C~~C~~~s~~~e~f~~LsL~i~ 148 (353)
T 1nb8_A 79 -ETLDSFMQHDVQELCRVLLDNVENKMKG---------TCVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIK 148 (353)
T ss_dssp -CBTTTTTTSCHHHHHHHHHHHHHHHTTT---------STTTTHHHHHHCEEEEEEEEESSSCCEEEEEEEESCEEECCT
T ss_pred -CCCCcccchhHHHHHHHHHHHHHHHhcC---------CCccchhhhhceeEEEEEEEeccCCCeeceeeeeEEEEEEEC
Confidence 5689999999999999999999988643 124568999999999999999999999999999999999999
Q ss_pred ccCChHHHHHhhhhhccccCCCCcccccccCccceeeeeeeeecCCceeEEEEeeeeecCc--eeeeecceeecCccccc
Q 005687 266 DVGSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTDGS--YVVKIDKHVEFPLELDL 343 (683)
Q Consensus 266 ~~~sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K~~~I~~LP~vLiIhLkRF~~d~~--~~~Ki~~~V~FP~~LDL 343 (683)
...+|.++|..|+..|.+++ +++|.|+.|+ .+.+.|+..|++||+||+|||+||.++.. ...|+.+.|.||..|||
T Consensus 149 ~~~~l~~~L~~~~~~E~l~~-~~~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~fp~~Ldl 226 (353)
T 1nb8_A 149 GKKNIFESFVDYVAVEQLDG-DNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPL 226 (353)
T ss_dssp TCSBHHHHHHHHTCCEEECT-TTCEECGGGC-EECEEEEEEESCCCSEEEEEECCCC--------CCCCCCCBCCSEEEC
T ss_pred CCcchHHHHHHhhCccccCC-CccccCCcCc-cEeeEEEEEhhcCCCceEEEEecEEEecccCceEecCcEEECCCeeeh
Confidence 99999999999999999964 7889999996 56789999999999999999999998753 46799999999999999
Q ss_pred cccccCCCCCCcceeEEEeEEEEeecCCCCCCcEEEEEEc-CCCeEEEEeCCcceEeccccccC---------------C
Q 005687 344 KPYTSGGQNSDVELKYHLYAIVEHMGSSPTCGHYFSYIRS-SPDTWHRLNDSRVTRVEEEFVLS---------------Q 407 (683)
Q Consensus 344 s~y~~~~~~~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr~-~~~~Wy~fNDs~Vs~vs~eeV~s---------------~ 407 (683)
.+|+.... ......|+|+|||+|.|. +++|||+||||. .+++||+|||+.|+++++++|.. .
T Consensus 227 ~~~~~~~~-~~~~~~Y~L~avv~H~G~-~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~gg~~~~~~~~~~~ 304 (353)
T 1nb8_A 227 DEFLQKTD-PKDPANYILHAVLVHSGD-NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCT 304 (353)
T ss_dssp GGGBSSCC-TTSCCEEEEEEEEEEESS-TTCCCEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCC-------CCE
T ss_pred hhhhcccC-CCCCceEEEEEEEEEeCC-CCCcEEEEEEecCCCCCEEEEECcceEECCHHHHHHHhcCCCccccccCcCC
Confidence 99997642 234579999999999997 799999999996 47899999999999999998863 5
Q ss_pred CeEEEEEEEcCCcccchhhhhhhccCCCCCCCCCchhHHHhhhhccC
Q 005687 408 DAYILFYAKQGTEWVSSLLEAESIGMNADISNSSPKSVLDNVENDYT 454 (683)
Q Consensus 408 ~AYiLfY~R~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 454 (683)
+||||||+|++... . ...+.....+|.++.+.+.+++.
T Consensus 305 ~aYiLfY~r~~~~~--~-------~~~~~~~~~~p~~~~~~~~~~~~ 342 (353)
T 1nb8_A 305 NAYMLVYIRESKLS--E-------VLQAVTDHDIPQQLVERLQEEKR 342 (353)
T ss_dssp EEEEEEEEETTTHH--H-------HTCCCCGGGSCHHHHHHHHHHHH
T ss_pred eEEEEEEEECchhh--h-------hhcccCccccCHHHHHHHHHHHH
Confidence 79999999987521 1 11233445689999998876643
No 6
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=100.00 E-value=3.2e-61 Score=527.78 Aligned_cols=310 Identities=25% Similarity=0.380 Sum_probs=259.2
Q ss_pred CCCCCccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCCC-CCCCchhhHHHHHHHHHHHHHhcCCCcccchhHHhhh
Q 005687 104 TGVGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPC-DGATEGFCVICALRDHIELSLASSGKVLSPRKLVDNL 182 (683)
Q Consensus 104 ~~~p~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~-~~~~~~~~ll~~L~~l~~~~~~ss~~~i~P~~fl~~L 182 (683)
...++||.|+||||||||+||+|+++|+|+++|+.+...... .......+++++|+.+|..++.+. ..+.|..|+.+|
T Consensus 11 ~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~-~~v~P~~~~~~l 89 (404)
T 2ayn_A 11 MELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTS-SSIPPIILLQFL 89 (404)
T ss_dssp CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHHC-SEECCHHHHHHH
T ss_pred cCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCCCCcccHHHHHHHHHHHHHhcCC-CcCChHHHHHHH
Confidence 456799999999999999999999999999999987544211 112346789999999998777654 899999999999
Q ss_pred hhcccccc------ccccccHHHHHHHHHHHHHHhhccCCCCccc----------cccCCCccceeecceEEEEEEEecC
Q 005687 183 NYISSFFQ------RYQQEDAHEFLQCLLDRLESCCLDSKTKDES----------LSSQGDNIVQRVFGGCLISKLQCCN 246 (683)
Q Consensus 183 ~~~~~~f~------~~~QQDA~Efl~~LLd~L~~e~~~~~~~~~~----------~~~~~~s~I~~lF~G~l~s~i~C~~ 246 (683)
+...+.|. ++.||||+|||.+||+.|++++......... ......++|.++|+|++.++++|..
T Consensus 90 ~~~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~e~~~~~~~~~~~~~~~s~i~~~F~G~l~s~i~C~~ 169 (404)
T 2ayn_A 90 HMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTMKCTE 169 (404)
T ss_dssp HHHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC------------------CCHHHHHTCEEEEEEEEESS
T ss_pred HHhCchhhccccCCCccccCHHHHHHHHHHHHHHHhccccCCcccccchhhhhhhhccccCchhhhhccEEEEEEEEecC
Confidence 99999887 5999999999999999999987543211000 0123457999999999999999999
Q ss_pred CCCcc--cccccceeeeeeeccc-CChHHHHHhhhhhccccCCCCcccccccCccceeeeeeeeecCCceeEEEEeeeee
Q 005687 247 CGSCS--DTYEPLIDLSLEIEDV-GSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKT 323 (683)
Q Consensus 247 Cg~~S--~~~E~F~~LsL~I~~~-~sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K~~~I~~LP~vLiIhLkRF~~ 323 (683)
|++.+ .+.|+|++|+|+|+.. .+|+++|+.|+. |.++ |.|++|++.+.+.|+..|.+||+||+|||+||.+
T Consensus 170 C~~~s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~-e~l~-----~~c~~c~~~~~~~k~~~i~~lP~vL~i~LkRF~~ 243 (404)
T 2ayn_A 170 SEEEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQ-EEIT-----KQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFY 243 (404)
T ss_dssp SCCCCCBCCEEEESSEEEECSSSCCBHHHHHHHTTE-ECCC-----CEETTTTEECCEEEEEEEEECCSSEEEEEECBCC
T ss_pred CCCccCceeeccCceEEeecCCCcccHHHHHHHhcc-ccee-----ecchhhCCccceeeeeeHhhCCCceEEEEEEEEE
Confidence 99985 7899999999999864 689999999997 4454 8999999999999999999999999999999998
Q ss_pred cCc--eeeeecceeecCccccccccccCCC-----------------------------------------------CCC
Q 005687 324 DGS--YVVKIDKHVEFPLELDLKPYTSGGQ-----------------------------------------------NSD 354 (683)
Q Consensus 324 d~~--~~~Ki~~~V~FP~~LDLs~y~~~~~-----------------------------------------------~~~ 354 (683)
+.. ...|+.+.|.||..|||.+|+.... ...
T Consensus 244 ~~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 323 (404)
T 2ayn_A 244 KEKESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSN 323 (404)
T ss_dssp CCSSSSCCBCCCCCBCCSEEECGGGBCHHHHHHTTTTTGGGTCTTC----------------------CCCCCSCTTTTC
T ss_pred ecccCceeccCceeccCceeEHhHhcChhhhhhcchhhhHHhhhhcccchhhhhhccccccccccccccccccccccCcC
Confidence 853 4689999999999999999986310 012
Q ss_pred cceeEEEeEEEEeecCCCCCCcEEEEEEcCCCeEEEEeCCcceEeccccccCCC-------eEEEEEEEcCCc
Q 005687 355 VELKYHLYAIVEHMGSSPTCGHYFSYIRSSPDTWHRLNDSRVTRVEEEFVLSQD-------AYILFYAKQGTE 420 (683)
Q Consensus 355 ~~~~YeL~AVV~H~G~s~~sGHY~ayvr~~~~~Wy~fNDs~Vs~vs~eeV~s~~-------AYiLfY~R~~~~ 420 (683)
....|+|+|||+|.|.++++|||+||||..+++||+|||+.|+++++++|.... ||||||+|++.+
T Consensus 324 ~~~~Y~L~avv~H~G~s~~~GHY~a~v~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~aYiLfY~r~~~~ 396 (404)
T 2ayn_A 324 NCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYGPRRVE 396 (404)
T ss_dssp CCSEEEEEEEEEEESSSTTSSEEEEEEEEETTEEEEEBTTBCCCBCHHHHGGGGSSSSSCEEEEEEEECC---
T ss_pred CCceEEEEEEEEecCCCCCCCCeEEEEECCCCeEEEeecccceecCHHHHHhhhCCCCCceEEEEEEEecCCC
Confidence 347899999999999889999999999987899999999999999999998655 999999998753
No 7
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=100.00 E-value=6.3e-60 Score=520.42 Aligned_cols=295 Identities=22% Similarity=0.321 Sum_probs=249.9
Q ss_pred CCCCCccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCCCCCC-----CchhhHHHHHHHHHHHHHhcCCCcccchhH
Q 005687 104 TGVGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGA-----TEGFCVICALRDHIELSLASSGKVLSPRKL 178 (683)
Q Consensus 104 ~~~p~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~-----~~~~~ll~~L~~l~~~~~~ss~~~i~P~~f 178 (683)
...++||.|+||||||||+||+|+++|+|+++|+.+......... ....+++++|+.+|..++.+....++|..|
T Consensus 21 ~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~v~p~~~ 100 (415)
T 1vjv_A 21 AQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLPVVL 100 (415)
T ss_dssp CCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEECCHHH
T ss_pred CCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCcccccccchhHHHHHHHHHHHHHhcCCCCccCHHHH
Confidence 456799999999999999999999999999999987543322111 025689999999999887766689999999
Q ss_pred Hhhhhhcccccc-------ccccccHHHHHHHHHHHHHHhhccCCCCccccccCCCccceeecceEEEEEEEecCCCCcc
Q 005687 179 VDNLNYISSFFQ-------RYQQEDAHEFLQCLLDRLESCCLDSKTKDESLSSQGDNIVQRVFGGCLISKLQCCNCGSCS 251 (683)
Q Consensus 179 l~~L~~~~~~f~-------~~~QQDA~Efl~~LLd~L~~e~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C~~Cg~~S 251 (683)
+.+|+...+.|. ++.||||+|||.+||+.|++++.. ++|.++|+ ++.++++|..|++.+
T Consensus 101 ~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~-------------~~i~~~F~-~~~~~~~C~~C~~~s 166 (415)
T 1vjv_A 101 LNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD-------------KFSEDFRI-QFKTTIKDTANDNDI 166 (415)
T ss_dssp HHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH-------------HHHTTTCE-EEEEEEEETTEEEEE
T ss_pred HHHHHHhCchhhccccCCCCccccCHHHHHHHHHHHHHHHhcc-------------chHHHHHH-hheEEEEECCCCCCc
Confidence 999999999998 899999999999999999998642 68999999 999999999999986
Q ss_pred --cccccceeeeeeeccc-CChHHHHHhhhhhccccCCCCcccccccCccceeeeeeeeecCCceeEEEEeeeeecCc--
Q 005687 252 --DTYEPLIDLSLEIEDV-GSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTDGS-- 326 (683)
Q Consensus 252 --~~~E~F~~LsL~I~~~-~sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K~~~I~~LP~vLiIhLkRF~~d~~-- 326 (683)
.+.|+|++|+|+|+.. .+|+++|+.|+. +.++ |.|++|+....+.|+..|.+||+||+|||+||.++..
T Consensus 167 ~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~-e~i~-----~~c~~c~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~ 240 (415)
T 1vjv_A 167 TVKENESDSKLQCHISGTTNFMRNGLLEGLN-EKIE-----KRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTN 240 (415)
T ss_dssp EEECCCEESCEEECCCTTCCBHHHHHHHHHE-EC--------------CCCCEEEEEEEEECBSEEEEEECCEEEETTTT
T ss_pred cccccccceeeeeccccccchHHHHHHHHhh-hhhh-----hcccccCCcccEEEEEEcccCCCeeEEEEEEEEEeCCCC
Confidence 5899999999999865 589999999997 4453 8899999999999999999999999999999999854
Q ss_pred eeeeecceeecCccccccccccCCC-------------------------------------------------------
Q 005687 327 YVVKIDKHVEFPLELDLKPYTSGGQ------------------------------------------------------- 351 (683)
Q Consensus 327 ~~~Ki~~~V~FP~~LDLs~y~~~~~------------------------------------------------------- 351 (683)
...|+++.|.||.+|||.+|+....
T Consensus 241 ~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 320 (415)
T 1vjv_A 241 KKSKILRKVVFPFQLDVADMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESE 320 (415)
T ss_dssp EEEECCCCCBCCSEEECGGGBCHHHHHHHHHHHHHHHHHHHHHHHC----------------CCCHHHHHHHHHHHHHHH
T ss_pred cchhhcCccCCCcEeEhHHhcChhhhhhhhhhHHHHHHHhhhhhhhhhhhhhccccccccccccccchhhhhchhhHHhh
Confidence 5689999999999999999985310
Q ss_pred ------------------CCCcceeEEEeEEEEeecCCCCCCcEEEEEEc--CCCeEEEEeCCcceEeccccccCCC---
Q 005687 352 ------------------NSDVELKYHLYAIVEHMGSSPTCGHYFSYIRS--SPDTWHRLNDSRVTRVEEEFVLSQD--- 408 (683)
Q Consensus 352 ------------------~~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr~--~~~~Wy~fNDs~Vs~vs~eeV~s~~--- 408 (683)
.......|+|+|||+|.|.++++|||+||||. .+++||+|||+.|+++++++|....
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~s~~~GHY~a~vr~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~ 400 (415)
T 1vjv_A 321 KDQWLEEYKKHFPPNLEKGENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGG 400 (415)
T ss_dssp HHHHHHHHHTTSCTTCCTTBCSSSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEECHHHHHGGGCCT
T ss_pred hhhhhhhcccccccccccccCCCceEEEEEEEEecCCCCCCCCEEEEEeCCCCCCcEEEeECCcCeEcCHHHHhhhcCCC
Confidence 01234789999999999988999999999998 5889999999999999999998754
Q ss_pred ----eEEEEEEEcC
Q 005687 409 ----AYILFYAKQG 418 (683)
Q Consensus 409 ----AYiLfY~R~~ 418 (683)
||||||+|++
T Consensus 401 ~~~~aYiLfY~r~~ 414 (415)
T 1vjv_A 401 ESDSALILMYKGFG 414 (415)
T ss_dssp TSCEEEEEEEEETT
T ss_pred CcceEEEEEEEecC
Confidence 9999999975
No 8
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=100.00 E-value=4.3e-59 Score=522.74 Aligned_cols=310 Identities=32% Similarity=0.548 Sum_probs=262.9
Q ss_pred CCCccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCchhhHHHHHHHHHHHHHhcCC---------Ccccch
Q 005687 106 VGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSG---------KVLSPR 176 (683)
Q Consensus 106 ~p~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~ll~~L~~l~~~~~~ss~---------~~i~P~ 176 (683)
..+||.|+||||||||+||+|+++|+|+++++...+...+.......++.++|..++..++.... ..+.|.
T Consensus 140 G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~ 219 (476)
T 3mhs_A 140 GLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQASSSSTSTNRQT 219 (476)
T ss_dssp CCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSCCTTTCHHHHHHHHHHHHHSCCCC--------CCCSCH
T ss_pred CCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhccCCCcccchHHHHHHHHHHHhhcccccccccccccccCcc
Confidence 45899999999999999999999999999998654332232234456889999999987775322 245666
Q ss_pred hHHhhh---hhccccccccccccHHHHHHHHHHHHHHhhccCCCC----ccccccCCCccceeecceEEEEEEEecCCCC
Q 005687 177 KLVDNL---NYISSFFQRYQQEDAHEFLQCLLDRLESCCLDSKTK----DESLSSQGDNIVQRVFGGCLISKLQCCNCGS 249 (683)
Q Consensus 177 ~fl~~L---~~~~~~f~~~~QQDA~Efl~~LLd~L~~e~~~~~~~----~~~~~~~~~s~I~~lF~G~l~s~i~C~~Cg~ 249 (683)
.|+..+ +...+.|.+++||||+|||.+||+.|++++...... .........++|.++|+|++.++++|..|++
T Consensus 220 ~~~~~l~~~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~G~l~~~~~C~~C~~ 299 (476)
T 3mhs_A 220 GFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQN 299 (476)
T ss_dssp HHHHHHHHHHHHCGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC-------CCCSCCSHHHHHSCEEEEEEEECTTTCC
T ss_pred hHHHHHHHHHHhccccCCCCCcCHHHHHHHHHHHHHHHHhhcccccccccccccccCCCcceeecceEEEEEEEECCCCC
Confidence 655554 477889999999999999999999999987543221 1122334578999999999999999999999
Q ss_pred cccc-cccceeeeeeecccCChHHHHHhhhhhccccCCCCcccccccCccceeeeeeeeecCCceeEEEEeeeeecC-ce
Q 005687 250 CSDT-YEPLIDLSLEIEDVGSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTDG-SY 327 (683)
Q Consensus 250 ~S~~-~E~F~~LsL~I~~~~sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K~~~I~~LP~vLiIhLkRF~~d~-~~ 327 (683)
++.+ .|+|++|+|+|++..+|+++|+.|+..|.+++ +.|.|++|+..+.+.|+..|.+||+||+|||+||.++. +.
T Consensus 300 ~s~~~~e~f~~LsL~i~~~~sl~~~L~~~~~~E~l~~--~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~ 377 (476)
T 3mhs_A 300 NSKTTIDPFLDLSLDIKDKKKLYECLDSFHKKEQLKD--FNYHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGS 377 (476)
T ss_dssp CCEEEEEEESCEEECCTTCCBHHHHHHHHHCCEECSS--CCCEETTTTEECCCEEEEEEEEBCSEEEEEECCEEECTTSC
T ss_pred eeCCcccchhhhccchhhhhHHHHHHHHhcChhhccC--CCCcCCccCCcccEEEEEEcccCCcceEEEeeeccccCCCC
Confidence 8755 99999999999999999999999999999974 34999999999999999999999999999999999864 45
Q ss_pred eeeecceeecCccccccccccCCCC-------CCcceeEEEeEEEEeecCCCCCCcEEEEEEcCCCeEEEEeCCcceEec
Q 005687 328 VVKIDKHVEFPLELDLKPYTSGGQN-------SDVELKYHLYAIVEHMGSSPTCGHYFSYIRSSPDTWHRLNDSRVTRVE 400 (683)
Q Consensus 328 ~~Ki~~~V~FP~~LDLs~y~~~~~~-------~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr~~~~~Wy~fNDs~Vs~vs 400 (683)
..|+.+.|.||.+|||.+|+..... ......|+|+|||+|.|. +++|||+||+|..+++||+|||+.|++++
T Consensus 378 ~~K~~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY~a~vr~~~~~W~~fnD~~V~~v~ 456 (476)
T 3mhs_A 378 NRKLDDFIEFPTYLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGT-VNEGHYIAFCKISGGQWFKFNDSMVSSIS 456 (476)
T ss_dssp EEECCCCCBCCSEEECGGGBSCCBCCC--CCCBCCCEEEEEEEEEEEEEC-SSSEEEEEEEECTTSCEEEEETTEEEEEC
T ss_pred eEECCEEEcCCCeeechhhcCcccccccccccCCCCCcEEEEEEEEeCCC-CCCCceEEEEECCCCcEEEEeCCceEECC
Confidence 7899999999999999999976543 234578999999999995 99999999999888999999999999999
Q ss_pred cccccCCCeEEEEEEEcC
Q 005687 401 EEFVLSQDAYILFYAKQG 418 (683)
Q Consensus 401 ~eeV~s~~AYiLfY~R~~ 418 (683)
+++|.+.+||||||+|++
T Consensus 457 ~~~v~~~~aYiLfY~r~~ 474 (476)
T 3mhs_A 457 QEEVLKEQAYLLFYTIRQ 474 (476)
T ss_dssp HHHHTTSCEEEEEEEEEE
T ss_pred HHHhccCCcEEEEEEEec
Confidence 999999999999999975
No 9
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=100.00 E-value=4.6e-58 Score=520.56 Aligned_cols=321 Identities=23% Similarity=0.393 Sum_probs=271.3
Q ss_pred CCCCccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCchhhHHHHHHHHHHHHHhcCCCcccchhHHhhhhh
Q 005687 105 GVGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICALRDHIELSLASSGKVLSPRKLVDNLNY 184 (683)
Q Consensus 105 ~~p~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~ll~~L~~l~~~~~~ss~~~i~P~~fl~~L~~ 184 (683)
..++||.|+||||||||+||+|+++|+|+++++...... .....+++++|+.+|..++. +...+.|..|+..+++
T Consensus 173 ~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~~----~~~~~~~~~~l~~lf~~l~~-~~~~~~~~~l~~~~~~ 247 (522)
T 2f1z_A 173 TGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG----DDSSKSVPLALQRVFYELQH-SDKPVGTKKLTKSFGW 247 (522)
T ss_dssp TSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCCS----SCTTTCHHHHHHHHHHHHHH-CSSCBCCTTHHHHTCC
T ss_pred CCccceecCcccHHHHHHHHHHhccHHHHHHHhhccccC----CcccchHHHHHHHHHHHHhc-CCCccCcHHHHhhcCC
Confidence 345899999999999999999999999999997653211 22334688899999986665 4568899999988764
Q ss_pred ccccccccccccHHHHHHHHHHHHHHhhccCCCCccccccCCCccceeecceEEEEEEEecCCCCcccccccceeeeeee
Q 005687 185 ISSFFQRYQQEDAHEFLQCLLDRLESCCLDSKTKDESLSSQGDNIVQRVFGGCLISKLQCCNCGSCSDTYEPLIDLSLEI 264 (683)
Q Consensus 185 ~~~~f~~~~QQDA~Efl~~LLd~L~~e~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C~~Cg~~S~~~E~F~~LsL~I 264 (683)
+.|.+++||||+|||.+||+.|++++... ...++|.++|+|++.+.++|..|++.+.+.|+|++|+|+|
T Consensus 248 --~~~~~~~QqDa~Efl~~LLd~L~~~l~~~---------~~~s~i~~lF~G~~~s~i~C~~C~~~s~~~e~f~~LsL~i 316 (522)
T 2f1z_A 248 --ETLDSFMQHDVQELCRVLLDNVENKMKGT---------CVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSI 316 (522)
T ss_dssp --CTTTSSTTSCHHHHHHHHHHHHHHHHTTS---------TTTTHHHHHHCEEEEEEECCSSSCCCCCEEEEESCEEECC
T ss_pred --ccCCCcccccHHHHHHHHHHHHHhhccCC---------ccccchhhheeEEEEEEEEcCCCCceeeeeeeeEEEEEEe
Confidence 56899999999999999999999987542 2356899999999999999999999999999999999999
Q ss_pred cccCChHHHHHhhhhhccccCCCCcccccccCccceeeeeeeeecCCceeEEEEeeeeecC--ceeeeecceeecCcccc
Q 005687 265 EDVGSLGSALESFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTDG--SYVVKIDKHVEFPLELD 342 (683)
Q Consensus 265 ~~~~sL~~~L~~~~~~E~ie~~dn~y~C~~C~~~~~a~K~~~I~~LP~vLiIhLkRF~~d~--~~~~Ki~~~V~FP~~LD 342 (683)
+...+|.++|..|+..|.+++ +++|.|+.|+ .+.+.|+..|.+||+||+|||+||.++. ....|+++.|.||..||
T Consensus 317 ~~~~~l~~~L~~~~~~E~l~~-~n~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fp~~Ld 394 (522)
T 2f1z_A 317 KGKKNIFESFVDYVAVEQLDG-DNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLP 394 (522)
T ss_dssp TTCCBHHHHHHHHTCEEEECT-TSCBCCGGGC-SBCEEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCCCBCCSEEE
T ss_pred CCcccchHHHHHhhceeecCC-cceeecCcCC-ccceEEEEEeecCCceEEEEEEeEEEcccCCcceEcCcEEeCCCeec
Confidence 999999999999999999964 7899999996 4688999999999999999999999985 35689999999999999
Q ss_pred ccccccCCCCCCcceeEEEeEEEEeecCCCCCCcEEEEEEc-CCCeEEEEeCCcceEeccccccC---------------
Q 005687 343 LKPYTSGGQNSDVELKYHLYAIVEHMGSSPTCGHYFSYIRS-SPDTWHRLNDSRVTRVEEEFVLS--------------- 406 (683)
Q Consensus 343 Ls~y~~~~~~~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr~-~~~~Wy~fNDs~Vs~vs~eeV~s--------------- 406 (683)
|.+|+.... ......|+|+|||+|.|. +++|||+||||. .+++||+|||+.|+++++++|+.
T Consensus 395 l~~~~~~~~-~~~~~~Y~L~avv~H~G~-~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~ 472 (522)
T 2f1z_A 395 LDEFLQKTD-PKDPANYILHAVLVHSGD-NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHC 472 (522)
T ss_dssp CGGGBSSCC-TTSCCEEEEEEEEEEECS-SSCSEEEEEECTTSSSCCEEEETTEEEECCHHHHSTTSSCCC--------C
T ss_pred chhhhcccc-CCCCcEEEEEEEEEeccc-CCCceEEEEEecCCCCCEEEEECceeEECCHHHHHHhhcCCCccccccCcC
Confidence 999997642 234579999999999997 799999999996 47899999999999999998863
Q ss_pred CCeEEEEEEEcCCcccchhhhhhhccCCCCCCCCCchhHHHhhhhccC
Q 005687 407 QDAYILFYAKQGTEWVSSLLEAESIGMNADISNSSPKSVLDNVENDYT 454 (683)
Q Consensus 407 ~~AYiLfY~R~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 454 (683)
.+||||||+|++... ..+.+....++|.++.+.+..+..
T Consensus 473 ~~aYiLfY~r~~~~~---------~~~~~~~~~~ip~~~~~~~~~e~~ 511 (522)
T 2f1z_A 473 TNAYMLVYIRESKLS---------EVLQAVTDHDIPQQLVERLQEEKR 511 (522)
T ss_dssp EEEEEEEEEETTSHH---------HHTCCCCTTTSCSHHHHHHHHTTT
T ss_pred CceEEEEEEECCchH---------HhhcccCccCCCHHHHHHHHHHHH
Confidence 579999999987521 112334556789999999988765
No 10
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.4e-55 Score=518.60 Aligned_cols=296 Identities=23% Similarity=0.321 Sum_probs=254.0
Q ss_pred CCCCCccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCchhhHHHHHHHHHHHHHhc--------------
Q 005687 104 TGVGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPR-PCDGATEGFCVICALRDHIELSLAS-------------- 168 (683)
Q Consensus 104 ~~~p~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~-~~~~~~~~~~ll~~L~~l~~~~~~s-------------- 168 (683)
....+||.|+||||||||+||+|+++|+|+++|+...+.. .........+++++|+.+|..++..
T Consensus 341 ~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~~~~~ 420 (854)
T 3ihp_A 341 GPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDGER 420 (854)
T ss_dssp STTCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHHHHHHCCSCGGGCHHHHHHHHHHHHHSCC-------------
T ss_pred CCCccceEecCCceehhHHHHHHhCcHHHHHHHHhhhhhhhccccCCccccHHHHHHHHHHHHhcccccccccccccccc
Confidence 3455999999999999999999999999999997432110 0011344568999999999877642
Q ss_pred ------CCCcccchhHHhhhhhccccccccccccHHHHHHHHHHHHHHhhccCCCCccccccCCCccceeecceEEEEEE
Q 005687 169 ------SGKVLSPRKLVDNLNYISSFFQRYQQEDAHEFLQCLLDRLESCCLDSKTKDESLSSQGDNIVQRVFGGCLISKL 242 (683)
Q Consensus 169 ------s~~~i~P~~fl~~L~~~~~~f~~~~QQDA~Efl~~LLd~L~~e~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i 242 (683)
....+.|..|+.+++...+.|.+++||||+|||.+||+.|++++.. .+.|.++|+|++.+++
T Consensus 421 ~~~~~~~~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFl~~LLd~L~~el~~------------~s~i~~lF~G~l~s~i 488 (854)
T 3ihp_A 421 VPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNCRS------------SENPNEVFRFLVEEKI 488 (854)
T ss_dssp --------CCBCCHHHHHHHTTTCTTTTSSSCCBHHHHHHHHHHHHHHTCTT------------SCCGGGGTCEEEEEEE
T ss_pred ccccccCCCccChHHHHHHHhhhccccccccccCHHHHHHHHHHHHHHHhcc------------cCCchhhcCceEEEEE
Confidence 3458999999999999999999999999999999999999987632 3578999999999999
Q ss_pred EecCCCCcccccccceeeeeeeccc--------------------------------CChHHHHHhhhhhccccCCCCcc
Q 005687 243 QCCNCGSCSDTYEPLIDLSLEIEDV--------------------------------GSLGSALESFTKLEKIEDPETKF 290 (683)
Q Consensus 243 ~C~~Cg~~S~~~E~F~~LsL~I~~~--------------------------------~sL~~~L~~~~~~E~ie~~dn~y 290 (683)
+|..|++++.+.++|++|+|+|+.. .+|++||+.|+..|.|++ |
T Consensus 489 ~C~~C~~vs~t~e~F~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~sL~dcL~~f~~~E~Le~----y 564 (854)
T 3ihp_A 489 KCLATEKVKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKMALPELVRAQVPFSSCLEAYGAPEQVDD----F 564 (854)
T ss_dssp EETTTTEEEEEEEEESEEEECCCGGGCTTHHHHHHHHHHHHHHHHTTCCCCCCCCEECCHHHHHHHHHSCEEEEE----E
T ss_pred EecCCCCEeEEeeeceEEEeeCCccccccccchhhhcccccccccccccccccccCCCCHHHHHHHhcCceEeee----e
Confidence 9999999999999999999999852 489999999999999986 9
Q ss_pred cccccCccceeeeeeeeecCCceeEEEEeeeeecC-ceeeeecceeecCccccccccccCCCC-----------------
Q 005687 291 TCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTDG-SYVVKIDKHVEFPLELDLKPYTSGGQN----------------- 352 (683)
Q Consensus 291 ~C~~C~~~~~a~K~~~I~~LP~vLiIhLkRF~~d~-~~~~Ki~~~V~FP~~LDLs~y~~~~~~----------------- 352 (683)
.|++|+.++.+.|+..|.+||+||+|||+||.++. ....|+...|.||..|||.+|+.....
T Consensus 565 ~C~~C~~k~~a~K~~~i~~lP~vLiihLkRF~~d~~~~~~Ki~~~V~FP~~LDl~~y~~~~~q~~E~~lp~~~~~~~~~~ 644 (854)
T 3ihp_A 565 WSTALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLRGTGLQPGEEELPDIAPPLVTPD 644 (854)
T ss_dssp EETTTTEEEEEEEEEEESSCCSEEEEEECCEEECGGGCEEECCEECCCCSEEECGGGBCCCSCTTCCBCCCC--------
T ss_pred eccccCCcceeeEEEEeeeCCceEEEEeehheecCCCceEECCeEEecCCcEehHHhccCCCCCCceecccccccccccc
Confidence 99999999999999999999999999999999964 456799999999999999999763110
Q ss_pred --------------------------------------------------------------------------------
Q 005687 353 -------------------------------------------------------------------------------- 352 (683)
Q Consensus 353 -------------------------------------------------------------------------------- 352 (683)
T Consensus 645 ~~~~~~~d~~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~hmdd~di~~p~~~~~~~~~~s~~~~~~~~~~e~i 724 (854)
T 3ihp_A 645 EPKAPMLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSSGPGSTSAAADPPPEDCV 724 (854)
T ss_dssp --------CHHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHHTTSCGGGSCCCCC--------------CCHHHH
T ss_pred cccccCcCHHHHHHHHhcCCCHHHHHHHHhhcCCCchHHHhHHHhhccCcccccccccccccccccccccccCCCCHHHH
Confidence
Q ss_pred ------------------------------------------------------------------CCcceeEEEeEEEE
Q 005687 353 ------------------------------------------------------------------SDVELKYHLYAIVE 366 (683)
Q Consensus 353 ------------------------------------------------------------------~~~~~~YeL~AVV~ 366 (683)
......|+|+|||+
T Consensus 725 ~~l~~mGf~~~~a~~aL~~t~~~~eraidwlfs~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~ 804 (854)
T 3ihp_A 725 TTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDLDAEAAMDISEGRSAADSISESVPVGPKVRDGPGKYQLFAFIS 804 (854)
T ss_dssp HHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC------------------CCCCCCCSEEEEEEEEE
T ss_pred HHHHHcCCCHHHHHHHHHhhcCcHHHHHHhhhcCcccccccccccccccccccccccccccccCCCCCCCceEEEEEEEE
Confidence 00112799999999
Q ss_pred eecCCCCCCcEEEEEEcCCCeEEEEeCCcceEeccccccCCCeEEEEEEEcC
Q 005687 367 HMGSSPTCGHYFSYIRSSPDTWHRLNDSRVTRVEEEFVLSQDAYILFYAKQG 418 (683)
Q Consensus 367 H~G~s~~sGHY~ayvr~~~~~Wy~fNDs~Vs~vs~eeV~s~~AYiLfY~R~~ 418 (683)
|.|.++++|||+||||. +++||+|||+.|+++ +++....||||||+|.+
T Consensus 805 H~G~~~~~GHY~~~~~~-~~~W~~~nD~~V~~~--~~~~~~~aYilfY~R~~ 853 (854)
T 3ihp_A 805 HMGTSTMCGHYVCHIKK-EGRWVIYNDQKVCAS--EKPPKDLGYIYFYQRVA 853 (854)
T ss_dssp EESSCSSCCEEEEEEEE-TTEEEEEETTEEEEC--SSCCTTSCSEEEEEECC
T ss_pred eecCCCCCcCeEEEEEe-CCEEEEEECCeeEEc--cccCCCcceEEEEEecC
Confidence 99998999999999999 799999999999997 45577899999999975
No 11
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=100.00 E-value=1.6e-33 Score=299.07 Aligned_cols=228 Identities=17% Similarity=0.229 Sum_probs=161.0
Q ss_pred CCCCCccccCCCccchHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCchhhHHHHH-HHHHHHHHhcCCCcccchhHHhhh
Q 005687 104 TGVGAGLENLGNTCFINAILQCFTHTLPLVQALRSFDHPRPCDGATEGFCVICAL-RDHIELSLASSGKVLSPRKLVDNL 182 (683)
Q Consensus 104 ~~~p~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~ll~~L-~~l~~~~~~ss~~~i~P~~fl~~L 182 (683)
.+.|+||+|+||||||||+||+||.+|++++.|+.+...... ......+..+| +++|..+-. ..+.|..|+..|
T Consensus 6 ~g~p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~--~~~~~~l~~~L~r~i~~~Lrk---~~~~P~~~l~~L 80 (374)
T 2vhf_A 6 IGKKKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKND--VEYYSETQELLRTEIVNPLRI---YGYVCATKIMKL 80 (374)
T ss_dssp SEESCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTTS--CTTHHHHHHHHHHTTHHHHHH---TSEECHHHHHHH
T ss_pred cCCCccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCCc--chhHHHHHHHHHHHHHHHHhh---cCCCcHHHHHHH
Confidence 356799999999999999999999999999999988543322 22334577788 788875543 889999999999
Q ss_pred hhcccccc-----ccccccHHHHHHHHHHHHHHh-hccCCCCccccccCCCccceeecceEEEEEEEecCCCCccccccc
Q 005687 183 NYISSFFQ-----RYQQEDAHEFLQCLLDRLESC-CLDSKTKDESLSSQGDNIVQRVFGGCLISKLQCCNCGSCSDTYEP 256 (683)
Q Consensus 183 ~~~~~~f~-----~~~QQDA~Efl~~LLd~L~~e-~~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C~~Cg~~S~~~E~ 256 (683)
+...|+|. +++||||+|||.+||..|... +.- +.. ........+++.++|. + ..+.
T Consensus 81 R~~~pQfae~~G~~~~QQDaEE~~t~Ll~~L~~~ep~l-kl~-s~~~~~~~~~~~q~f~----------E------~~e~ 142 (374)
T 2vhf_A 81 RKILEKVEAASGFTSEEKDPEEFLNILFHHILRVEPLL-KIR-SAGQKVQDCYFYQIFM----------E------KNEK 142 (374)
T ss_dssp HHHHHHHC--------CCCHHHHHHHHHTTTTCCCCSE-EEE-ETTCCCEEESCEECCC----------C------CC--
T ss_pred HHHhHHHhcccCCCccccCHHHHHHHHHHHHhhccccc-ccc-cccccccccHHHHHhc----------C------cccc
Confidence 99999885 489999999999999999754 210 000 0011112357777776 0 0000
Q ss_pred ceeeeeeecccCChHHHHH-hhhhhccccCCCCcccccccCccceeeeeeeeecCCceeEEEEeeeeecCceeeeeccee
Q 005687 257 LIDLSLEIEDVGSLGSALE-SFTKLEKIEDPETKFTCEKCKEQVSVEKQLMLDKVPSVAAFHLKRFKTDGSYVVKIDKHV 335 (683)
Q Consensus 257 F~~LsL~I~~~~sL~~~L~-~~~~~E~ie~~dn~y~C~~C~~~~~a~K~~~I~~LP~vLiIhLkRF~~d~~~~~Ki~~~V 335 (683)
. . ..++...++ +|+. . .++|.+||+||+||+.|| +++.||.++|
T Consensus 143 ~---~-----~e~~~qL~e~nfl~-~----------------------gikisrLP~yLtVq~vRF----gKkaKIlrkV 187 (374)
T 2vhf_A 143 V---G-----VPTIQQLLEWSFIN-S----------------------NLKFAEAPSCLIIQMPRF----GKDFKLFKKI 187 (374)
T ss_dssp C---C-----CCBHHHHHHHHHHH-H----------------------TEEESSCCSEEEEECCCC----SSSSSCCCCC
T ss_pred c---C-----CcHHHHhhhHHHHH-c----------------------CCeeecCCcceEEeeecc----CccccccCCC
Confidence 0 0 122333332 2222 1 123999999999999999 5677999999
Q ss_pred ecCccccccccccCCCC---------------------------------------------------------------
Q 005687 336 EFPLELDLKPYTSGGQN--------------------------------------------------------------- 352 (683)
Q Consensus 336 ~FP~~LDLs~y~~~~~~--------------------------------------------------------------- 352 (683)
.||.+||+.+++.++..
T Consensus 188 ~fp~eLDvtdl~tdelr~~~vr~kl~e~e~~~~~k~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (374)
T 2vhf_A 188 FPSLELNITDLLEDTPRQCRICGGLAMYECRECYDDPDISAGKIKQFCKTCNTQVHLHPKRLNHKYNPVSLPKDLPDWDW 267 (374)
T ss_dssp BCCSEECCGGGBSSSCCBCTTTSCBCCEECGGGTTCTTTTTTSCCEECHHHHHHHTTSGGGTTCCCEECCC---------
T ss_pred CCcchhccHhhcCcchhhccHhHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhhhhcccccccccCcccccccc
Confidence 99999999988753210
Q ss_pred ---CCcceeEEEeEEEEeecCCCCCCcEEEEEEc--CCCeEEEEeCC
Q 005687 353 ---SDVELKYHLYAIVEHMGSSPTCGHYFSYIRS--SPDTWHRLNDS 394 (683)
Q Consensus 353 ---~~~~~~YeL~AVV~H~G~s~~sGHY~ayvr~--~~~~Wy~fNDs 394 (683)
......|+|+|||+ +++|||+||||. .+++||+||-.
T Consensus 268 ~~g~~psg~yeL~aVlt-----adsgHYvafVK~~~~d~~W~~FDsm 309 (374)
T 2vhf_A 268 RHGCIPCQNMELFAVLC-----IETSHYVAFVKYGKDDSAWLFFDSM 309 (374)
T ss_dssp -------CCEEEEEEEE-----EETTEEEEEEECSSSTTCEEEEETT
T ss_pred ccCCCCceeEEEEEEEE-----ccCCceEEEEEecCCCCCeEEEech
Confidence 01126899999999 678999999997 47899999863
No 12
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=96.50 E-value=0.017 Score=56.93 Aligned_cols=34 Identities=12% Similarity=0.127 Sum_probs=27.0
Q ss_pred EEEEeecCCCCCCcEEEEEEcCCCeEEEEeCCcceEec
Q 005687 363 AIVEHMGSSPTCGHYFSYIRSSPDTWHRLNDSRVTRVE 400 (683)
Q Consensus 363 AVV~H~G~s~~sGHY~ayvr~~~~~Wy~fNDs~Vs~vs 400 (683)
+-++..|. .++|||+.+... .+ +.+|-..+.+++
T Consensus 162 ~~~vF~G~-~~~GHY~~~~~~-~~--~~vDG~~~~~~~ 195 (211)
T 3mp2_A 162 MHAVYTGT-TQNGHYMVDDIE-HG--YCVDGMGIKPLK 195 (211)
T ss_dssp EEEEEESC-TTTCEEEEEETT-TT--EEEETTEEECCC
T ss_pred eEEEEEcC-CCCceEEEEecc-cc--eEEeCCceeEcc
Confidence 45666995 889999999765 23 889999998886
No 13
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=94.86 E-value=0.51 Score=49.29 Aligned_cols=37 Identities=24% Similarity=0.454 Sum_probs=28.2
Q ss_pred eEEEEeecCCCCCCcEEEEEEcCCCeEEEEeCCcceEecc
Q 005687 362 YAIVEHMGSSPTCGHYFSYIRSSPDTWHRLNDSRVTRVEE 401 (683)
Q Consensus 362 ~AVV~H~G~s~~sGHY~ayvr~~~~~Wy~fNDs~Vs~vs~ 401 (683)
++..+..|. .++|||+.+... ... |.||-..+.+++.
T Consensus 260 ~~a~vF~G~-~~~GHYt~~~~~-~~~-~~~Dg~~~~~~~~ 296 (315)
T 2fe8_A 260 LCANEYTGN-YQCGHYTHITAK-ETL-YRIDGAHLTKMSE 296 (315)
T ss_dssp SEEEEEESC-GGGCEEEEEEES-SSE-EEEETTEEEEESE
T ss_pred EEEEEEECC-CCccceEEEecC-Cce-eEEeCCcceeccc
Confidence 455556895 679999999864 233 8999999999875
No 14
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=84.60 E-value=0.25 Score=52.04 Aligned_cols=81 Identities=12% Similarity=0.078 Sum_probs=55.2
Q ss_pred hhhhcceeeEeeecCCCCCChhhhhhccCCCCCCcccccCC-----------CCCCCCCchhHHHhhhcCCCCcc--CCC
Q 005687 14 DLVFAREIVDEKTLDPSWSSPETLHDHLHPSNHPLTLTDLD-----------KDQNNDDDDDYEEIYRDTRPISS--SYG 80 (683)
Q Consensus 14 ~~~~~~~i~~ev~ld~~~~~~~~~k~~l~~~~~~~slt~v~-----------~~~~~~dd~d~~~i~~~~k~~~~--~~g 80 (683)
.++|....+. |+++++ ++...||.+++ ++|||| +|++++|+..++.+ +.++++. ++|
T Consensus 9 ~Vk~~g~~~~-v~v~~~-~Tv~~lK~~I~------~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~--~ik~g~~l~L~g 78 (320)
T 3shq_A 9 IVKWSGKEYP-VDLTDQ-DTVEVLRHEIF------RKTQVRPERQKLLNLKYKGKTAADNVKISAL--ELKPNFKLMMVG 78 (320)
T ss_dssp EEEETTEEEE-EEEETT-SBHHHHHHHHH------HHHCCCGGGCEETTCBSSSSBCCTTSBTTSS--CCC--CEEEEEC
T ss_pred EEEECCEEEE-EEECCC-CcHHHHHHHHH------HHHCcCHHHeEEeecccCCcccCccccHHHc--CCCCCCEEEEEc
Confidence 3556666554 788888 89999999999 999998 37889999888887 6788877 556
Q ss_pred CCCCCC-CCCCCCccCCCCcccCCC
Q 005687 81 RYNWGS-SLLSRPVEKHWPIQIKPT 104 (683)
Q Consensus 81 ~~~~~~-~~l~~p~~~~~~~e~~p~ 104 (683)
+....- ..+..|.+...|++++..
T Consensus 79 s~~~~i~~~~~~p~~~~~~~eD~~~ 103 (320)
T 3shq_A 79 STEADIEDACSLPDNIGEVVDDFDD 103 (320)
T ss_dssp CCC----------CCCSCCCCTTCC
T ss_pred cchhhhcccccCCCcCCcccccCCC
Confidence 654321 112567788888988763
No 15
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=70.17 E-value=1.8 Score=39.59 Aligned_cols=37 Identities=14% Similarity=0.148 Sum_probs=28.6
Q ss_pred EeEEEEeecCCCCCCcEEEEEEcCCCeEEEEeCCcceEeccc
Q 005687 361 LYAIVEHMGSSPTCGHYFSYIRSSPDTWHRLNDSRVTRVEEE 402 (683)
Q Consensus 361 L~AVV~H~G~s~~sGHY~ayvr~~~~~Wy~fNDs~Vs~vs~e 402 (683)
.+|-|.-.|. +|-+-++-. ...||.+||+.+.+...+
T Consensus 109 fhAgIflkg~----eHAVFa~~T-S~GWyaiDDe~fypwtPd 145 (167)
T 1qmy_A 109 FHAGIFLKGQ----EHAVFACVT-SNGWYAIDDEDFYPWTPD 145 (167)
T ss_dssp EEEEEEEETT----TEEEEEECC-TTSSEEEETTEEEECCCC
T ss_pred hhhheeecCC----CceEEEEEc-cCceEEecccccccCCCC
Confidence 5566666776 799988876 455999999999998653
No 16
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=68.86 E-value=1.6 Score=37.24 Aligned_cols=53 Identities=21% Similarity=0.371 Sum_probs=38.6
Q ss_pred hhhcceeeEeeecCCCCCChhhhhhccCCCCCCcccccCC--------CCCCCCCchhHHHhhhcCCCCcc
Q 005687 15 LVFAREIVDEKTLDPSWSSPETLHDHLHPSNHPLTLTDLD--------KDQNNDDDDDYEEIYRDTRPISS 77 (683)
Q Consensus 15 ~~~~~~i~~ev~ld~~~~~~~~~k~~l~~~~~~~slt~v~--------~~~~~~dd~d~~~i~~~~k~~~~ 77 (683)
++|....+.+++++++ .+...||.+++ .++|+| +|..++|+ .++.. +.+++..
T Consensus 12 Vk~~g~~~~~l~v~~~-~TV~~lK~~I~------~~tgip~~~QkLi~~Gk~L~D~-tL~~~--~I~~g~~ 72 (96)
T 1wgg_A 12 VKWGKEKFEGVELNTD-EPPMVFKAQLF------ALTGVQPARQKVMVKGGTLKDD-DWGNI--KMKNGMT 72 (96)
T ss_dssp EEETTEEEEEEEEESS-SCHHHHHHHHH------HHTCCCTTTSCCEETTEECCSS-CCCSC--CCCSSCE
T ss_pred EEECCEEEEEEEECCC-CcHHHHHHHHH------HHHCcCHHHeEEEECCcCCCCC-CHHHC--CCCCCCE
Confidence 3445555545667777 78999999999 999999 57788887 66665 4556655
No 17
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.69 E-value=1.7 Score=37.63 Aligned_cols=52 Identities=12% Similarity=0.168 Sum_probs=38.6
Q ss_pred hhcceeeEeeecCCCCCChhhhhhccCCCCCCcccccCC---------CCCCCCCchhHHHhhhcCCCCcc
Q 005687 16 VFAREIVDEKTLDPSWSSPETLHDHLHPSNHPLTLTDLD---------KDQNNDDDDDYEEIYRDTRPISS 77 (683)
Q Consensus 16 ~~~~~i~~ev~ld~~~~~~~~~k~~l~~~~~~~slt~v~---------~~~~~~dd~d~~~i~~~~k~~~~ 77 (683)
+|....+ .|+++++ .+...||.+++ .+|||| +++.++|+..++.+ +.++++.
T Consensus 15 k~~Gk~~-~v~v~~~-~TV~~LK~~I~------~~tgIpp~~QkLi~~~~gkL~D~~tLs~~--~I~~gst 75 (100)
T 2dzm_A 15 EYRDRNV-DVVLEDT-CTVGEIKQILE------NELQIPVSKMLLKGWKTGDVEDSTVLKSL--HLPKNNS 75 (100)
T ss_dssp ECSSCEE-EEEEETT-SBHHHHHHHHH------HHHCCCTTTCCEECCSSSCCCTTSBHHHH--CCCSEEE
T ss_pred EeCCeEE-EEEECCC-CcHHHHHHHHH------HHHCCChhHeEEEccCCCCCCCcCCHHHc--CCCCCCE
Confidence 3443333 4567777 88999999999 999998 35667888888888 6667655
No 18
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=42.67 E-value=9.6 Score=31.88 Aligned_cols=43 Identities=16% Similarity=0.180 Sum_probs=36.1
Q ss_pred ceeeEeeecCCCCCChhhhhhcc-CCCCCCcccccCC--------CCCCCCCchhHHHh
Q 005687 19 REIVDEKTLDPSWSSPETLHDHL-HPSNHPLTLTDLD--------KDQNNDDDDDYEEI 68 (683)
Q Consensus 19 ~~i~~ev~ld~~~~~~~~~k~~l-~~~~~~~slt~v~--------~~~~~~dd~d~~~i 68 (683)
+.+-++|+++++ .+...+|.++ . ..+|+| +|..++|+..++..
T Consensus 12 ~~~~i~v~v~~~-~TV~~lK~~I~~------~~~gip~~~QrLi~~Gk~L~D~~tL~~y 63 (87)
T 2lxa_A 12 PKFSIEHDFSPS-DTILQIKQHLIS------EEKASHISEIKLLLKGKVLHDNLFLSDL 63 (87)
T ss_dssp SCEECCEECCTT-CBHHHHHHHHHH------TTSCSSSTTEEEEETTEECCTTCBHHHH
T ss_pred CEEEEEEcCCCC-CcHHHHHHHHHH------HhcCCChHHEEEEECCEECcCcCCHHHc
Confidence 456677778788 8999999999 8 777888 68899999988887
No 19
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=41.40 E-value=9.9 Score=31.67 Aligned_cols=53 Identities=19% Similarity=0.266 Sum_probs=38.2
Q ss_pred hhhcceeeEee-ecCCCCCChhhhhhccCCCCCCcccccCC-----------CCCCCCCchhHHHhhhcCCCCcc
Q 005687 15 LVFAREIVDEK-TLDPSWSSPETLHDHLHPSNHPLTLTDLD-----------KDQNNDDDDDYEEIYRDTRPISS 77 (683)
Q Consensus 15 ~~~~~~i~~ev-~ld~~~~~~~~~k~~l~~~~~~~slt~v~-----------~~~~~~dd~d~~~i~~~~k~~~~ 77 (683)
++|....+ .+ +++++ ++...||.+++ ..+|+| +|..++|+..++.. +.+++..
T Consensus 12 Vk~~g~~~-~i~~v~~~-~TV~~lK~~I~------~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~--~i~~g~~ 76 (90)
T 1v5t_A 12 VKWGGQEY-SVTTLSED-DTVLDLKQFLK------TLTGVLPERQKLLGLKVKGKPAENDVKLGAL--KLKPNTK 76 (90)
T ss_dssp EEETTEEE-EECSCCSS-SBHHHHHHHHH------HHTCCCTTTCEEESCEETTEECCTTSBHHHH--TCCTTEE
T ss_pred EEECCEEE-EEEEeCCC-CCHHHHHHHHH------HHHCcCHHHeEEEeeccCCcCcCCCCCHHHc--CCCCCCE
Confidence 34444444 46 78888 88999999999 888887 36677888778877 5556555
No 20
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=35.76 E-value=21 Score=30.01 Aligned_cols=51 Identities=18% Similarity=0.292 Sum_probs=35.7
Q ss_pred hhcceeeEeeecCCCCCChhhhhhccCCCCCCcccccCC--------CCCCCCCchhHHHhhhcCCCCcc
Q 005687 16 VFAREIVDEKTLDPSWSSPETLHDHLHPSNHPLTLTDLD--------KDQNNDDDDDYEEIYRDTRPISS 77 (683)
Q Consensus 16 ~~~~~i~~ev~ld~~~~~~~~~k~~l~~~~~~~slt~v~--------~~~~~~dd~d~~~i~~~~k~~~~ 77 (683)
++....+ +++++++ .+...||.+++ ..+|+| +|..+ ||..++.. +.+.+..
T Consensus 23 k~~g~~~-~i~v~~~-~TV~~LK~~I~------~~tgip~~~QrL~~~Gk~L-dd~tL~~~--~i~~g~~ 81 (95)
T 1v86_A 23 IWNKTKH-DVKVPLD-STGSELKQKIH------SITGLPPAMQKVMYKGLVP-EDKTLREI--KVTSGAK 81 (95)
T ss_dssp EETTEEE-EEEECTT-SBHHHHHHHHH------HHHCSCSTTCCCBSSSBCC-SSSBHHHH--CCCTTEE
T ss_pred EECCEEE-EEEECCC-CcHHHHHHHHH------HHHCcCHHHeEEEECCeeC-CcCcHHHC--CCCCCCE
Confidence 3444433 5678888 88999999999 999998 56677 44467666 4455544
No 21
>3o65_A Putative ataxin-3-like protein; papain-like fold, hydrolase-protein complex; 2.70A {Homo sapiens} PDB: 2aga_A 1yzb_A 2jri_A 2dos_A
Probab=32.38 E-value=58 Score=31.38 Aligned_cols=55 Identities=20% Similarity=0.230 Sum_probs=39.2
Q ss_pred EeEEEEeecCCCCCCcEEEEEEcCCCeEEEEeCCcceEecccc--c------cCCCeEEEEEEEcCCcc
Q 005687 361 LYAIVEHMGSSPTCGHYFSYIRSSPDTWHRLNDSRVTRVEEEF--V------LSQDAYILFYAKQGTEW 421 (683)
Q Consensus 361 L~AVV~H~G~s~~sGHY~ayvr~~~~~Wy~fNDs~Vs~vs~ee--V------~s~~AYiLfY~R~~~~~ 421 (683)
..|+|++... |++|..|- +|.||.+|-..-.+.-..+ + +....|-+|-.+-+.|.
T Consensus 110 ~~~FI~N~~~-----HWfaiRki-gg~WyNLdS~l~~P~~i~~~yL~~fL~ql~~eg~siFvV~g~lP~ 172 (191)
T 3o65_A 110 ERSFICNYKQ-----HWFTIRKF-GKHWFNLNSLLAGPELISDTCLANFLARLQQQAYSVFVVKGDLPD 172 (191)
T ss_dssp CCEEEEEESS-----CEEEEEEE-TTEEEECCTTSSSCEEECHHHHHHHHGGGGSTTEEEEEEESCCCC
T ss_pred hhhhhhcccc-----ceeeEEec-CCEEEEccCCCCCCCCcChHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence 5688988864 99999876 8899999986554443222 1 13678999988866553
No 22
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=27.14 E-value=70 Score=29.32 Aligned_cols=31 Identities=26% Similarity=0.254 Sum_probs=23.4
Q ss_pred CCccccCCCccchHHHHHHHhCCH-HHHHHHH
Q 005687 107 GAGLENLGNTCFINAILQCFTHTL-PLVQALR 137 (683)
Q Consensus 107 p~GL~NlGNTCYlNSvLQ~L~~~p-~fr~~L~ 137 (683)
+.|+.|--++||+|++||....+. +|.+...
T Consensus 13 fys~pN~hdncWLNtilQLfryvdepfFd~~y 44 (167)
T 1qmy_A 13 FYSRPNNHDNAWLNAILQLFRYVEEPFFDWVY 44 (167)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCCTTHHHH
T ss_pred cccCCCCCcchHHHHHHHHHHHcCccchhhcc
Confidence 468999999999999999886542 3445444
No 23
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=25.22 E-value=24 Score=30.10 Aligned_cols=43 Identities=16% Similarity=0.180 Sum_probs=33.6
Q ss_pred ceeeEeeecCCCCCChhhhhhcc-CCCCCCcccccCC--------CCCCCCCchhHHHh
Q 005687 19 REIVDEKTLDPSWSSPETLHDHL-HPSNHPLTLTDLD--------KDQNNDDDDDYEEI 68 (683)
Q Consensus 19 ~~i~~ev~ld~~~~~~~~~k~~l-~~~~~~~slt~v~--------~~~~~~dd~d~~~i 68 (683)
+.+-.+|+++++ .+...+|.++ . ..+|+| +|..++|+..++..
T Consensus 30 ~~~~i~v~v~~~-~TV~~lK~~I~~------~~~gip~~~QrLi~~Gk~L~D~~tL~dy 81 (98)
T 4a20_A 30 PKFSIEHDFSPS-DTILQIKQHLIS------EEKASHISEIKLLLKGKVLHDNLFLSDL 81 (98)
T ss_dssp SCEEEEEEECTT-CBHHHHHHHHHH------TTSCSCGGGEEEEETTEEECTTCBGGGS
T ss_pred CEEEEEEecCCC-ChHHHHHHHHHH------HhcCCChhhEEEEECCEECcCcCCHHHc
Confidence 344566777788 8899999999 7 667777 68888888877776
No 24
>2oxg_Z SOXZ protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2ox5_Z 2oxh_Z*
Probab=22.79 E-value=1.3e+02 Score=25.99 Aligned_cols=56 Identities=21% Similarity=0.206 Sum_probs=42.6
Q ss_pred eeEEEeEEEEeecCC---CC------CCcEEEEEEcCCCeEEEEeCCcceEeccccccCCCeEEEEEEEcC
Q 005687 357 LKYHLYAIVEHMGSS---PT------CGHYFSYIRSSPDTWHRLNDSRVTRVEEEFVLSQDAYILFYAKQG 418 (683)
Q Consensus 357 ~~YeL~AVV~H~G~s---~~------sGHY~ayvr~~~~~Wy~fNDs~Vs~vs~eeV~s~~AYiLfY~R~~ 418 (683)
...++...|.|-=.+ .+ -.||+..+.- .+||..|-.+++....+.++|+=|+-+-.
T Consensus 18 ~~~~vk~~I~HPMetGl~~d~~g~~IPa~~I~~v~~------~~ng~~v~~~~~~~~iS~NP~~~F~~~~~ 82 (108)
T 2oxg_Z 18 ETVTVKALISHKMESGQRKDADGKLIPRSIINRFTC------ELNGVNVVDVAIDPAVSTNPYFEFDAKVD 82 (108)
T ss_dssp EEEEEEEEECCCCBCSCCBCTTSCBCCCBCEEEEEE------EETTEEEEEEEECTTBCSSCEEEEEEEEC
T ss_pred CCEEEEEEeECCCccccccCcCCCccchHheEEEEE------EECCEEEEEEEeCCccccCCeEEEEEecC
Confidence 356677778874322 11 1699988875 48999999999999999999999998854
No 25
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=22.04 E-value=33 Score=28.09 Aligned_cols=38 Identities=11% Similarity=0.077 Sum_probs=30.1
Q ss_pred eeecCCCCCChhhhhhccCCCCCCcccccCC--------CCCC-CCCchhHHHh
Q 005687 24 EKTLDPSWSSPETLHDHLHPSNHPLTLTDLD--------KDQN-NDDDDDYEEI 68 (683)
Q Consensus 24 ev~ld~~~~~~~~~k~~l~~~~~~~slt~v~--------~~~~-~~dd~d~~~i 68 (683)
+++++++ .+...+|.+++ ..+|+| +|.. ++|+..++..
T Consensus 24 ~l~v~~~-~TV~~LK~~I~------~~~gip~~~QrLi~~Gk~lL~D~~tL~~y 70 (84)
T 2kk8_A 24 ELEVDYR-DTLLVVKQKIE------RSQHIPVSKQTLIVDGIVILREDLTVEQC 70 (84)
T ss_dssp EEEECTT-SBHHHHHHHHH------HHHTCCGGGEEEEETTEECCCSSSBHHHH
T ss_pred EEEECCC-ChHHHHHHHHH------HHHCcChHHEEEEECCEEecCCcCCHHHc
Confidence 3557777 78999999999 889998 4666 7888777766
No 26
>1v8h_A Sulfur oxidation protein SOXZ; lithotrophic sulfur oxidation, unknown function, structural genomics; 1.20A {Thermus thermophilus HB8} SCOP: b.1.18.19
Probab=21.84 E-value=1.5e+02 Score=25.58 Aligned_cols=56 Identities=13% Similarity=0.194 Sum_probs=43.1
Q ss_pred eeEEEeEEEEeecCC---------CCCCcEEEEEEcCCCeEEEEeCCcceEeccccccCCCeEEEEEEEcC
Q 005687 357 LKYHLYAIVEHMGSS---------PTCGHYFSYIRSSPDTWHRLNDSRVTRVEEEFVLSQDAYILFYAKQG 418 (683)
Q Consensus 357 ~~YeL~AVV~H~G~s---------~~sGHY~ayvr~~~~~Wy~fNDs~Vs~vs~eeV~s~~AYiLfY~R~~ 418 (683)
...++...|.|-=.+ .--.||+..+.- .+||..|-.+++....+.++|+=|+-+-.
T Consensus 17 ~~~~vk~~I~HPmetGl~~D~~g~~iPa~~I~~v~~------~~ng~~v~~~~~~~~iS~nP~~~F~~~~~ 81 (107)
T 1v8h_A 17 EEFRLQVVAQHPNEPGTRRDAEGKLIPAKYINLVEV------YFEGEKVAEARPGPSTSANPLYAFKFKAE 81 (107)
T ss_dssp CEEEEEEEECCCCBCSCCBCTTSCBCCCBCEEEEEE------EETTEEEEEECCCSSCCSSCEEEEEEECC
T ss_pred CcEEEEEEeECCCCccccccccCCcCchHheEEEEE------EECCEEEEEEEeCCccccCCeEEEEEecC
Confidence 356777788884332 011699988875 48999999999999999999999998853
No 27
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=20.86 E-value=67 Score=29.12 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=11.8
Q ss_pred EEEEEecCCCCcccccc
Q 005687 239 ISKLQCCNCGSCSDTYE 255 (683)
Q Consensus 239 ~s~i~C~~Cg~~S~~~E 255 (683)
.-...|.+||+.....+
T Consensus 68 p~~~~C~~CG~~~~~~~ 84 (139)
T 3a43_A 68 EAVFKCRNCNYEWKLKE 84 (139)
T ss_dssp CCEEEETTTCCEEEGGG
T ss_pred CCcEECCCCCCEEeccc
Confidence 34678999998655443
No 28
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=20.54 E-value=23 Score=29.08 Aligned_cols=38 Identities=13% Similarity=0.249 Sum_probs=26.5
Q ss_pred eeecCCCCCChhhhhhccCCCCCCcccccCC--------CCCCCCCchhHHHh
Q 005687 24 EKTLDPSWSSPETLHDHLHPSNHPLTLTDLD--------KDQNNDDDDDYEEI 68 (683)
Q Consensus 24 ev~ld~~~~~~~~~k~~l~~~~~~~slt~v~--------~~~~~~dd~d~~~i 68 (683)
+++++++ .+...+|.+++ ..+|+| +|..++|+..++..
T Consensus 25 ~l~v~~~-~TV~~LK~~I~------~~~gip~~~qrL~~~Gk~L~D~~tL~~~ 70 (85)
T 2kd0_A 25 PLSVSPD-CTVKDLKSQLQ------PITNVLPRGQKLIFKGKVLVETSTLKQS 70 (85)
T ss_dssp EEEECTT-SBHHHHHHHHH------HHHCCCTTTCEEEETTEECCTTCBTTTT
T ss_pred EEEECCC-CcHHHHHHHHH------HHHCcChHHEEEEECCeECCCcCCHHHC
Confidence 4567777 78999999999 888888 34455555444433
Done!