Query 005688
Match_columns 683
No_of_seqs 461 out of 2501
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 12:14:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005688.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005688hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03016 Exostosin: Exostosin 100.0 1.2E-43 2.6E-48 375.5 19.2 272 348-676 2-278 (302)
2 KOG1021 Acetylglucosaminyltran 100.0 3E-38 6.5E-43 350.2 18.4 280 349-672 71-379 (464)
3 KOG2264 Exostosin EXT1L [Signa 99.6 5.3E-16 1.1E-20 164.8 10.4 216 398-672 218-458 (907)
4 KOG1225 Teneurin-1 and related 99.6 7.8E-16 1.7E-20 168.9 10.6 121 116-305 245-365 (525)
5 KOG1225 Teneurin-1 and related 99.5 2.1E-14 4.6E-19 157.7 11.2 171 111-309 167-343 (525)
6 KOG1226 Integrin beta subunit 99.4 2E-13 4.3E-18 152.0 10.1 143 126-308 468-621 (783)
7 KOG0994 Extracellular matrix g 99.1 5.2E-10 1.1E-14 127.6 11.0 200 97-308 882-1147(1758)
8 KOG1226 Integrin beta subunit 99.1 3.8E-10 8.3E-15 126.1 9.1 134 126-309 515-653 (783)
9 KOG1219 Uncharacterized conser 99.0 6.8E-10 1.5E-14 132.8 6.8 107 121-310 3865-3980(4289)
10 KOG0994 Extracellular matrix g 98.9 7.9E-09 1.7E-13 118.2 12.2 80 96-189 789-876 (1758)
11 KOG1022 Acetylglucosaminyltran 98.6 2.7E-07 5.9E-12 99.2 11.3 210 398-672 126-340 (691)
12 KOG1836 Extracellular matrix g 98.5 7.6E-07 1.6E-11 110.5 14.7 106 92-202 698-814 (1705)
13 KOG4289 Cadherin EGF LAG seven 98.3 1E-06 2.2E-11 103.2 8.2 72 121-195 1717-1799(2531)
14 KOG4289 Cadherin EGF LAG seven 98.3 8.2E-07 1.8E-11 103.9 5.7 94 137-275 1220-1318(2531)
15 KOG1219 Uncharacterized conser 98.0 4.6E-06 1E-10 101.4 4.7 68 233-309 3869-3940(4289)
16 PF07974 EGF_2: EGF-like domai 98.0 7.6E-06 1.7E-10 55.7 3.3 27 125-151 6-32 (32)
17 KOG1217 Fibrillins and related 97.8 0.00013 2.8E-09 81.8 12.7 65 236-310 280-356 (487)
18 KOG1836 Extracellular matrix g 97.7 0.00019 4.1E-09 89.9 12.6 185 95-308 804-1022(1705)
19 KOG4260 Uncharacterized conser 97.7 5.9E-05 1.3E-09 75.2 6.1 130 142-301 132-303 (350)
20 PF07974 EGF_2: EGF-like domai 97.6 4.9E-05 1.1E-09 51.8 2.8 25 282-306 6-32 (32)
21 KOG3512 Netrin, axonal chemotr 97.5 0.00063 1.4E-08 72.9 11.0 55 257-312 413-483 (592)
22 KOG1217 Fibrillins and related 97.3 0.0028 6E-08 71.0 13.6 150 127-306 136-306 (487)
23 KOG1214 Nidogen and related ba 97.2 0.0013 2.9E-08 74.6 8.8 140 124-305 699-860 (1289)
24 smart00051 DSL delta serrate l 97.1 0.00047 1E-08 54.9 3.4 46 258-306 17-63 (63)
25 KOG1214 Nidogen and related ba 97.1 0.0017 3.7E-08 73.8 8.4 137 122-303 739-908 (1289)
26 PF00008 EGF: EGF-like domain 96.9 0.00064 1.4E-08 46.4 1.9 27 124-150 3-32 (32)
27 KOG1218 Proteins containing Ca 96.3 0.048 1E-06 57.9 12.8 155 134-303 45-209 (316)
28 PF12661 hEGF: Human growth fa 96.2 0.0022 4.7E-08 34.4 0.9 13 139-151 1-13 (13)
29 KOG3512 Netrin, axonal chemotr 96.0 0.026 5.5E-07 60.9 8.7 103 95-202 301-430 (592)
30 PF12661 hEGF: Human growth fa 96.0 0.0034 7.3E-08 33.7 1.0 13 294-306 1-13 (13)
31 smart00179 EGF_CA Calcium-bind 95.8 0.012 2.7E-07 41.5 3.6 32 121-152 3-39 (39)
32 smart00051 DSL delta serrate l 95.7 0.01 2.2E-07 47.4 3.2 30 121-151 32-63 (63)
33 PF00053 Laminin_EGF: Laminin 95.6 0.0072 1.6E-07 45.6 2.0 27 127-153 3-33 (49)
34 PF00008 EGF: EGF-like domain 95.2 0.0091 2E-07 40.7 1.2 24 282-305 4-32 (32)
35 cd00054 EGF_CA Calcium-binding 95.1 0.027 5.9E-07 39.2 3.5 32 121-152 3-38 (38)
36 KOG4260 Uncharacterized conser 95.0 0.018 3.9E-07 57.9 3.1 41 262-308 132-183 (350)
37 cd00055 EGF_Lam Laminin-type e 94.9 0.025 5.4E-07 42.9 3.1 28 126-153 3-34 (50)
38 PF00852 Glyco_transf_10: Glyc 94.7 0.058 1.3E-06 58.5 6.4 115 536-667 141-261 (349)
39 PF01414 DSL: Delta serrate li 94.6 0.012 2.6E-07 46.9 0.5 45 257-306 16-63 (63)
40 KOG1218 Proteins containing Ca 94.6 0.42 9.1E-06 50.7 12.5 151 130-310 7-179 (316)
41 smart00180 EGF_Lam Laminin-typ 94.4 0.041 8.8E-07 40.9 3.1 23 131-153 11-33 (46)
42 cd00053 EGF Epidermal growth f 93.9 0.068 1.5E-06 36.5 3.2 29 124-152 5-36 (36)
43 smart00181 EGF Epidermal growt 93.7 0.084 1.8E-06 36.3 3.4 27 125-152 6-35 (35)
44 PHA02887 EGF-like protein; Pro 93.0 0.11 2.3E-06 45.9 3.5 33 121-154 84-124 (126)
45 smart00179 EGF_CA Calcium-bind 90.8 0.24 5.3E-06 34.6 2.8 26 282-307 9-39 (39)
46 PF07645 EGF_CA: Calcium-bindi 90.5 0.18 4E-06 36.6 1.9 27 121-147 3-34 (42)
47 PF04863 EGF_alliinase: Alliin 90.4 0.16 3.4E-06 38.6 1.6 30 125-154 17-52 (56)
48 cd00054 EGF_CA Calcium-binding 90.0 0.31 6.7E-06 33.6 2.8 26 282-307 9-38 (38)
49 cd00055 EGF_Lam Laminin-type e 88.6 0.36 7.8E-06 36.5 2.4 20 289-308 13-34 (50)
50 PF01414 DSL: Delta serrate li 88.1 0.24 5.1E-06 39.5 1.1 46 139-199 18-63 (63)
51 cd00053 EGF Epidermal growth f 88.1 0.46 1E-05 32.1 2.5 26 282-307 6-36 (36)
52 KOG3607 Meltrins, fertilins an 86.6 0.44 9.6E-06 56.0 2.8 33 121-154 626-658 (716)
53 KOG3607 Meltrins, fertilins an 86.6 0.6 1.3E-05 54.9 3.8 34 279-312 627-661 (716)
54 KOG2619 Fucosyltransferase [Ca 86.6 1.1 2.4E-05 48.4 5.5 100 565-680 193-296 (372)
55 PF00053 Laminin_EGF: Laminin 86.3 0.38 8.3E-06 36.1 1.4 21 288-308 11-33 (49)
56 PF12947 EGF_3: EGF domain; I 85.2 0.5 1.1E-05 33.2 1.4 25 125-149 6-32 (36)
57 PF12955 DUF3844: Domain of un 83.0 0.68 1.5E-05 40.5 1.6 38 282-324 13-72 (103)
58 PF12955 DUF3844: Domain of un 82.6 0.98 2.1E-05 39.5 2.4 31 124-154 12-62 (103)
59 PHA02887 EGF-like protein; Pro 82.5 0.86 1.9E-05 40.3 2.0 25 284-309 94-124 (126)
60 PF04863 EGF_alliinase: Alliin 81.8 0.71 1.5E-05 35.2 1.1 29 282-310 17-53 (56)
61 smart00181 EGF Epidermal growt 81.7 1.3 2.8E-05 30.3 2.3 25 282-307 6-35 (35)
62 smart00180 EGF_Lam Laminin-typ 78.5 2.4 5.1E-05 31.4 3.0 17 292-308 17-33 (46)
63 PF09064 Tme5_EGF_like: Thromb 78.3 1.6 3.4E-05 30.0 1.7 22 175-196 6-28 (34)
64 PF01683 EB: EB module; Inter 77.5 3.3 7.2E-05 31.4 3.7 38 257-302 9-46 (52)
65 PHA03099 epidermal growth fact 75.7 1.8 4E-05 39.0 2.0 29 125-154 51-83 (139)
66 PF00534 Glycos_transf_1: Glyc 73.6 3 6.5E-05 39.4 3.1 48 628-676 83-131 (172)
67 cd03814 GT1_like_2 This family 67.0 5.8 0.00013 41.8 3.9 50 627-677 256-306 (364)
68 cd03802 GT1_AviGT4_like This f 66.0 6.9 0.00015 41.1 4.2 50 628-678 234-285 (335)
69 PHA03099 epidermal growth fact 66.0 5.1 0.00011 36.2 2.6 26 284-310 53-84 (139)
70 PF06247 Plasmod_Pvs28: Plasmo 63.8 2.1 4.6E-05 41.4 -0.2 133 130-305 10-163 (197)
71 cd03823 GT1_ExpE7_like This fa 62.7 6.8 0.00015 41.1 3.4 48 628-676 253-302 (359)
72 cd03808 GT1_cap1E_like This fa 60.5 8.5 0.00018 40.0 3.6 48 628-676 254-302 (359)
73 PF01683 EB: EB module; Inter 60.5 8.4 0.00018 29.1 2.6 25 121-147 20-46 (52)
74 PF12947 EGF_3: EGF domain; I 57.6 3.1 6.6E-05 29.2 -0.2 26 235-270 7-32 (36)
75 PF07645 EGF_CA: Calcium-bindi 56.0 5.7 0.00012 28.7 1.0 21 282-302 10-34 (42)
76 cd03798 GT1_wlbH_like This fam 55.5 10 0.00022 39.6 3.2 46 628-674 269-315 (377)
77 KOG1388 Attractin and platelet 54.9 7.4 0.00016 38.6 1.8 73 126-204 53-130 (217)
78 cd03821 GT1_Bme6_like This fam 50.7 14 0.0003 38.8 3.3 47 629-676 273-320 (375)
79 cd04951 GT1_WbdM_like This fam 50.6 17 0.00036 38.4 4.0 48 629-677 254-302 (360)
80 cd03801 GT1_YqgM_like This fam 49.3 17 0.00036 37.7 3.7 49 628-677 266-315 (374)
81 cd03822 GT1_ecORF704_like This 48.2 18 0.00039 38.1 3.7 42 628-670 258-302 (366)
82 cd03807 GT1_WbnK_like This fam 47.7 16 0.00035 38.0 3.3 45 628-673 259-304 (365)
83 PF05686 Glyco_transf_90: Glyc 47.2 27 0.00058 38.6 4.9 100 565-678 154-257 (395)
84 KOG3514 Neurexin III-alpha [Si 46.0 12 0.00025 45.2 1.9 34 121-154 624-661 (1591)
85 PF00954 S_locus_glycop: S-loc 45.2 21 0.00045 31.6 3.1 28 121-148 78-108 (110)
86 cd03818 GT1_ExpC_like This fam 45.1 69 0.0015 34.9 7.8 49 628-677 291-340 (396)
87 cd03819 GT1_WavL_like This fam 43.1 24 0.00051 37.3 3.7 48 628-676 254-303 (355)
88 KOG0196 Tyrosine kinase, EPH ( 41.6 53 0.0011 39.0 6.1 65 127-198 248-320 (996)
89 cd03804 GT1_wbaZ_like This fam 40.6 32 0.00069 36.6 4.2 44 628-672 252-295 (351)
90 PLN02871 UDP-sulfoquinovose:DA 40.5 25 0.00055 39.5 3.5 48 629-677 323-371 (465)
91 PF13524 Glyco_trans_1_2: Glyc 40.3 18 0.0004 30.4 1.8 32 647-679 9-40 (92)
92 cd03811 GT1_WabH_like This fam 39.9 28 0.00062 35.8 3.6 47 629-676 255-302 (353)
93 cd03799 GT1_amsK_like This is 38.9 31 0.00067 36.3 3.7 49 628-677 246-301 (355)
94 cd03800 GT1_Sucrose_synthase T 38.9 27 0.00058 37.6 3.3 47 629-676 294-341 (398)
95 KOG3516 Neurexin IV [Signal tr 38.7 19 0.00041 44.1 2.1 34 121-155 546-584 (1306)
96 cd03794 GT1_wbuB_like This fam 38.5 28 0.00061 36.5 3.4 48 628-676 285-338 (394)
97 PRK15484 lipopolysaccharide 1, 38.3 34 0.00073 37.3 4.0 47 628-675 267-315 (380)
98 PF12662 cEGF: Complement Clr- 37.2 21 0.00045 22.7 1.2 14 139-152 3-20 (24)
99 cd03809 GT1_mtfB_like This fam 36.8 25 0.00054 36.9 2.6 47 628-675 263-310 (365)
100 cd05844 GT1_like_7 Glycosyltra 36.5 40 0.00086 35.9 4.2 46 629-675 256-308 (367)
101 PF13692 Glyco_trans_1_4: Glyc 36.4 36 0.00078 30.5 3.3 40 629-669 62-103 (135)
102 PF00919 UPF0004: Uncharacteri 36.3 33 0.00071 29.9 2.8 32 392-424 12-44 (98)
103 cd03805 GT1_ALG2_like This fam 35.6 39 0.00085 36.4 4.0 45 628-673 290-335 (392)
104 cd03792 GT1_Trehalose_phosphor 33.0 47 0.001 35.8 4.0 48 628-676 264-312 (372)
105 cd03825 GT1_wcfI_like This fam 32.7 49 0.0011 34.9 4.1 48 628-676 255-303 (365)
106 TIGR03088 stp2 sugar transfera 31.3 45 0.00097 35.9 3.5 47 629-676 264-311 (374)
107 cd04962 GT1_like_5 This family 30.7 53 0.0011 34.9 3.9 47 629-676 262-309 (371)
108 cd03806 GT1_ALG11_like This fa 30.7 56 0.0012 36.2 4.2 50 628-677 315-365 (419)
109 TIGR03087 stp1 sugar transfera 27.6 59 0.0013 35.5 3.7 39 630-669 290-330 (397)
110 PRK15427 colanic acid biosynth 27.4 67 0.0014 35.5 4.1 48 628-676 289-343 (406)
111 cd03816 GT1_ALG1_like This fam 26.7 64 0.0014 35.7 3.8 50 627-677 304-357 (415)
112 PRK09922 UDP-D-galactose:(gluc 26.7 68 0.0015 34.4 4.0 48 629-677 249-298 (359)
113 cd03812 GT1_CapH_like This fam 26.5 89 0.0019 32.9 4.8 44 628-672 257-301 (358)
114 cd04955 GT1_like_6 This family 26.5 77 0.0017 33.4 4.3 44 628-672 258-303 (363)
115 KOG3516 Neurexin IV [Signal tr 25.7 42 0.00092 41.3 2.1 37 278-314 546-588 (1306)
116 PF06247 Plasmod_Pvs28: Plasmo 24.9 21 0.00045 34.7 -0.4 60 234-302 50-119 (197)
117 cd03820 GT1_amsD_like This fam 24.3 84 0.0018 32.2 4.0 41 628-669 243-284 (348)
118 KOG3514 Neurexin III-alpha [Si 24.1 51 0.0011 40.1 2.4 34 233-275 628-661 (1591)
119 smart00672 CAP10 Putative lipo 23.5 1.6E+02 0.0035 30.4 5.7 104 564-679 79-189 (256)
120 TIGR02149 glgA_Coryne glycogen 23.5 82 0.0018 33.8 3.8 48 628-676 271-319 (388)
121 cd03795 GT1_like_4 This family 23.4 74 0.0016 33.4 3.4 45 628-673 254-301 (357)
122 TIGR03449 mycothiol_MshA UDP-N 21.7 97 0.0021 33.7 4.0 42 628-670 293-335 (405)
123 PHA01630 putative group 1 glyc 21.7 1.1E+02 0.0024 32.8 4.3 49 628-677 200-249 (331)
124 KOG2492 CDK5 activator-binding 20.8 1E+02 0.0022 33.8 3.6 62 354-424 55-117 (552)
125 PHA01633 putative glycosyl tra 20.6 1.1E+02 0.0025 32.9 4.1 43 629-672 215-258 (335)
126 cd03796 GT1_PIG-A_like This fa 20.6 1E+02 0.0022 33.6 3.9 48 628-676 260-308 (398)
127 PLN02949 transferase, transfer 20.2 1.2E+02 0.0026 34.3 4.3 40 629-668 346-386 (463)
128 cd03817 GT1_UGDG_like This fam 20.0 1.1E+02 0.0023 31.9 3.8 50 628-678 269-319 (374)
No 1
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=100.00 E-value=1.2e-43 Score=375.48 Aligned_cols=272 Identities=33% Similarity=0.604 Sum_probs=195.0
Q ss_pred cCCceEEEecCChhhhHHHhhccccccccccccccCcCccccccccchhHHHHHHHHhcCCCccCCcCCCceEEEeccce
Q 005688 348 KKRPLLYVYDLPPEFNSLLLEGRHYKLECVNRIYNEKNETLWTDMLYGSQMAFYESILASPHRTLNGEEADFFFVPVLDS 427 (683)
Q Consensus 348 ~~~p~IYvYdLP~~fn~~ll~~~~~~~~c~~~~~~~~~~~~w~~~~y~~E~~~~e~L~~s~~rT~dP~eAdlFyVP~~~~ 427 (683)
.++++|||||||++||.+++... .........+.+|++|.+||++|++|++||.||+|||+||||++.+
T Consensus 2 ~~~lkVYVY~lp~~~~~~~~~~~-----------~~~~~~~~~~~~~~~e~~l~~~l~~s~~~T~dp~eAdlF~vP~~~~ 70 (302)
T PF03016_consen 2 HRGLKVYVYPLPPKFNKDLLDPR-----------EDEQCSWYETSQYALEVILHEALLNSPFRTDDPEEADLFFVPFYSS 70 (302)
T ss_pred CCCCEEEEEeCCccccccceecc-----------ccccCCCcccccchHHHHHHHHHHhCCcEeCCHHHCeEEEEEcccc
Confidence 45789999999999999888321 1122333456799999999999999999999999999999999998
Q ss_pred eeeeecCCCCcccccccccccchhHHHHHHHHHHHHHHcCcccccCCCccEEEEeccCCCCccCCcc--cccceEEeecc
Q 005688 428 CIITRADDAPHLSAQEHRGLRSSLTLEFYKKAYEHIIEHYPYWNRTSGRDHIWFFSWDEGACYAPKE--IWNSMMLVHWG 505 (683)
Q Consensus 428 ~~~~~~~~~p~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~PyWnR~~GrDH~~v~~~d~g~~~~~~~--~~~~~~l~~~g 505 (683)
+...... .........+.+..++.++++++|||||++|+||||++++|+|.+..... +.+...++...
T Consensus 71 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~w~r~~G~dH~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 140 (302)
T PF03016_consen 71 CYFHHWW----------GSPNSGADRDSLSDALRHLLASYPYWNRSGGRDHFFVNSHDRGGCSFDRNPRLMNNSIRAVVA 140 (302)
T ss_pred ccccccc----------CCccchhhHHHHHHHHHHHHhcCchhhccCCCCeEEEeccccccccccccHhhhccchhheec
Confidence 8741110 01111123445567778888899999999999999999999888864321 11111111100
Q ss_pred CCccCCCcccceeccCCccccCcCCCCCCCccCCCCceeecCccCCChhhhhccccCCCCCCCceeEEeccCCCCCCCCC
Q 005688 506 NTNSKHNHSTTAYWADNWDRISSSRRGNHSCFDPEKDLVLPAWKAPDAFVLRSKLWASPREKRKTLFYFNGNLGSAYPNG 585 (683)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~kDvviP~~~~~~~~~~~~~~~~~~~~~R~~L~~F~G~~~~~~~~~ 585 (683)
... ....+|+|++||++|++............+..+..+|++|++|+|++...
T Consensus 141 --------------~~~---------~~~~~~~~~~Di~~P~~~~~~~~~~~~~~~~~~~~~R~~l~~f~g~~~~~---- 193 (302)
T PF03016_consen 141 --------------FSS---------FSSSCFRPGFDIVIPPFVPPSSLPDWRPWPQRPPARRPYLLFFAGTIRPS---- 193 (302)
T ss_pred --------------cCC---------CCcCcccCCCCeeccccccccccCCccccccCCccCCceEEEEeeecccc----
Confidence 000 12358999999999998766543322222345678999999999998641
Q ss_pred CCCCCccHHHHHHHHHHhcCCCCCccccCcccCcceEEecCCchhHHHHhhcCceecccCCCC-CchhHHHHHhcCceeE
Q 005688 586 RPESSYSMGVRQKLAEEYGSSPNKEGKLGKQHAEDVIVTSLRSENYHEDLSSSVFCGVLPGDG-WSGRMEDSILQGCIPV 664 (683)
Q Consensus 586 ~~~~~ys~~iR~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~y~~~m~~S~FCL~p~Gd~-~s~Rl~dAi~~GCIPV 664 (683)
...|+.++|+.|++.|++.++.....+ ........+|.+.|++|||||+|+|++ +++||+|||++|||||
T Consensus 194 --~~~~~~~~r~~l~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~S~FCL~p~G~~~~s~Rl~eal~~GcIPV 264 (302)
T PF03016_consen 194 --SNDYSGGVRQRLLDECKSDPDFRCSDG-------SETCPSPSEYMELLRNSKFCLCPRGDGPWSRRLYEALAAGCIPV 264 (302)
T ss_pred --ccccchhhhhHHHHhcccCCcceeeec-------ccccccchHHHHhcccCeEEEECCCCCcccchHHHHhhhceeeE
Confidence 111678999999999987654321100 011245577999999999999999997 6899999999999999
Q ss_pred EeeCCeee--cccc
Q 005688 665 VIQCKFIF--STTL 676 (683)
Q Consensus 665 iisD~~~l--~~~~ 676 (683)
||+|++.| +++|
T Consensus 265 ii~d~~~lPf~~~l 278 (302)
T PF03016_consen 265 IISDDYVLPFEDVL 278 (302)
T ss_pred EecCcccCCccccc
Confidence 99999986 5544
No 2
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=100.00 E-value=3e-38 Score=350.17 Aligned_cols=280 Identities=29% Similarity=0.412 Sum_probs=194.2
Q ss_pred CCceEEEecCChhhhHHHhhcccccc--------cccc-------c--cccCc-----Ccccc-ccccchhHHHHHHHHh
Q 005688 349 KRPLLYVYDLPPEFNSLLLEGRHYKL--------ECVN-------R--IYNEK-----NETLW-TDMLYGSQMAFYESIL 405 (683)
Q Consensus 349 ~~p~IYvYdLP~~fn~~ll~~~~~~~--------~c~~-------~--~~~~~-----~~~~w-~~~~y~~E~~~~e~L~ 405 (683)
....||+|++|+.|+..++..+.... .|.. . .+..+ ....| .++||+.|.+||.+|+
T Consensus 71 ~~~~v~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~E~~~~~~~~ 150 (464)
T KOG1021|consen 71 AGASVYVYNLPSGFDVSLLLFHKQIPTSPNNKKFMCSYKLNEKRGKVYVYHEGNKPLFHTPSWCLTDQYASEGIFHNRML 150 (464)
T ss_pred cCcceeeeccchhhhhhhhccCccccccCcchhhhhhhhhhcccCceEEecCCCCccccCCCcccccchhHHHHHHHHHh
Confidence 34578999999999999988764332 2221 0 11111 12234 5689999999999995
Q ss_pred --cCCCccCCcCCCceEEEeccceeeeeecCCCCcccccccccccchhHHHHHHHHHHHHHHcCcccccCCCccEEEEec
Q 005688 406 --ASPHRTLNGEEADFFFVPVLDSCIITRADDAPHLSAQEHRGLRSSLTLEFYKKAYEHIIEHYPYWNRTSGRDHIWFFS 483 (683)
Q Consensus 406 --~s~~rT~dP~eAdlFyVP~~~~~~~~~~~~~p~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~PyWnR~~GrDH~~v~~ 483 (683)
.+++||.||+|||+||||||+++.+.+....+.-+ .+ ....+++++.+.-+++++|||||+.|+|||||+.
T Consensus 151 ~~~~~~Rt~dp~~Ad~f~vPf~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~i~~~~~~~p~W~Rs~G~DH~~v~~ 223 (464)
T KOG1021|consen 151 RRESAFRTLDPLEADAFYVPFYASLDYNRALLWPDER------VN-AILRSILQDYIVALLSKQPYWNRSSGRDHFFVAC 223 (464)
T ss_pred cccCceecCChhhCcEEEEcceeeEehhhhcccCCcc------cc-hHHHHHHHHHHHHHHhcCchhhccCCCceEEEeC
Confidence 78999999999999999999999887654433210 01 1123344455555578999999999999999999
Q ss_pred cCCCCccCCcccccceEEeeccCCccCCCcccceeccCCccccCcCCCCCCCccCCC-CceeecCccCCChhhhh--ccc
Q 005688 484 WDEGACYAPKEIWNSMMLVHWGNTNSKHNHSTTAYWADNWDRISSSRRGNHSCFDPE-KDLVLPAWKAPDAFVLR--SKL 560 (683)
Q Consensus 484 ~d~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~-kDvviP~~~~~~~~~~~--~~~ 560 (683)
+|++...... .++++++..+...+ .+. + ...|.+. +||+||++..++..... ...
T Consensus 224 ~~~~~~~~~~-~~~~~~~~i~~~~n----~a~----------l-------s~~~~~~~~dv~iP~~~~~~~~~~~~~~~~ 281 (464)
T KOG1021|consen 224 HDWGDFRRRS-DWGASISLIPEFCN----GAL----------L-------SLEFFPWNKDVAIPYPTIPHPLSPPENSWQ 281 (464)
T ss_pred Ccchheeecc-chhhHHHHHHhhCC----cce----------e-------ecccccCCCcccCCCccCcCccCccccccc
Confidence 9998775432 22222211111111 000 0 1246777 99999998766554322 123
Q ss_pred cCCCCCCCceeEEeccCCCCCCCCCCCCCCccHHHHHHHHHHhcCCCCCccccCcccCcceEEecCCchhHHHHhhcCce
Q 005688 561 WASPREKRKTLFYFNGNLGSAYPNGRPESSYSMGVRQKLAEEYGSSPNKEGKLGKQHAEDVIVTSLRSENYHEDLSSSVF 640 (683)
Q Consensus 561 ~~~~~~~R~~L~~F~G~~~~~~~~~~~~~~ys~~iR~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~y~~~m~~S~F 640 (683)
...+..+|++|+||+|+. .++.||+.|+++|+++++.+..+.+. +....+.+...|++.|++|+|
T Consensus 282 ~~~~~~~R~~L~~F~G~~------------~~~~iR~~L~~~~~~~~~~~~~~~~~---~g~~~~~~~~~y~~~m~~S~F 346 (464)
T KOG1021|consen 282 GGVPFSNRPILAFFAGAP------------AGGQIRSILLDLWKKDPDTEVFVNCP---RGKVSCDRPLNYMEGMQDSKF 346 (464)
T ss_pred cCCCCCCCceEEEEeccc------------cCCcHHHHHHHHhhcCcCccccccCC---CCccccCCcchHHHHhhcCeE
Confidence 345668999999999984 14669999999999844433222221 111235677999999999999
Q ss_pred ecccCCCCC-chhHHHHHhcCceeEEeeCCeee
Q 005688 641 CGVLPGDGW-SGRMEDSILQGCIPVVIQCKFIF 672 (683)
Q Consensus 641 CL~p~Gd~~-s~Rl~dAi~~GCIPViisD~~~l 672 (683)
||+|+||++ ++|+||||++|||||||+|+++|
T Consensus 347 CL~p~Gd~~ts~R~fdai~~gCvPViisd~~~l 379 (464)
T KOG1021|consen 347 CLCPPGDTPTSPRLFDAIVSGCVPVIISDGIQL 379 (464)
T ss_pred EECCCCCCcccHhHHHHHHhCCccEEEcCCccc
Confidence 999999975 88999999999999999999886
No 3
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=99.64 E-value=5.3e-16 Score=164.78 Aligned_cols=216 Identities=21% Similarity=0.227 Sum_probs=130.1
Q ss_pred HHHHHHHhcCCCccCCcCCCceEEEeccceeeeeecCCCCcccccccccccchhHHHHHHHHHHHHHHcCcccccCCCcc
Q 005688 398 MAFYESILASPHRTLNGEEADFFFVPVLDSCIITRADDAPHLSAQEHRGLRSSLTLEFYKKAYEHIIEHYPYWNRTSGRD 477 (683)
Q Consensus 398 ~~~~e~L~~s~~rT~dP~eAdlFyVP~~~~~~~~~~~~~p~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~PyWnR~~GrD 477 (683)
..|.+.+.+..|.|+||+.|+++++-+= -.. .| ..++. .+ ++- +-++||| |++|+|
T Consensus 218 ~~fq~t~~~n~~~ve~pd~ACiyi~lvg------e~q-~P-------~~l~p---~e-----lek-lyslp~w-~~dg~N 273 (907)
T KOG2264|consen 218 QVFQETIPNNVYLVETPDKACIYIHLVG------EIQ-SP-------VVLTP---AE-----LEK-LYSLPHW-RTDGFN 273 (907)
T ss_pred HHHHHhcccceeEeeCCCccEEEEEEec------ccc-CC-------CcCCh---Hh-----hhh-hhcCccc-cCCCcc
Confidence 4677778888999999999999998871 111 11 11222 11 122 2478999 789999
Q ss_pred EEEEeccCCCCccCCcccccceEEeeccCCccCCCcccceeccCCccccCcCCCCCCCccCCCCceeecCccCCChhhhh
Q 005688 478 HIWFFSWDEGACYAPKEIWNSMMLVHWGNTNSKHNHSTTAYWADNWDRISSSRRGNHSCFDPEKDLVLPAWKAPDAFVLR 557 (683)
Q Consensus 478 H~~v~~~d~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~kDvviP~~~~~~~~~~~ 557 (683)
|++++.....- ..|.+.-+.-|++-. + +... .-..|||++|+++++...+.....+
T Consensus 274 hvl~Nl~r~s~------~~n~lyn~~t~raiv-------v--Qssf---------~~~q~RpgfDl~V~pv~h~~~e~~~ 329 (907)
T KOG2264|consen 274 HVLFNLGRPSD------TQNLLYNFQTGRAIV-------V--QSSF---------YTVQIRPGFDLPVDPVNHIAVEKNF 329 (907)
T ss_pred eEEEEccCccc------cccceeEeccCceEE-------E--eecc---------eeeeeccCCCcccCcccccccCccc
Confidence 99996544311 111111111121100 0 0000 0126999999999987776655555
Q ss_pred ccccCCCCCCCceeEEeccCCCCCCCCCCCCCCccHHHHHHHHHHhcCCCCCccccCcccCcceEEe-------------
Q 005688 558 SKLWASPREKRKTLFYFNGNLGSAYPNGRPESSYSMGVRQKLAEEYGSSPNKEGKLGKQHAEDVIVT------------- 624 (683)
Q Consensus 558 ~~~~~~~~~~R~~L~~F~G~~~~~~~~~~~~~~ys~~iR~~L~~~~~~~~~~~~~~g~~~~~~~~~~------------- 624 (683)
.++....+.+|++|+.|+|++++. +.. -...++...+ +..++.+.. -+..+-+++.
T Consensus 330 ~e~~p~vP~~RkyL~t~qgki~~~----~ss---Ln~~~aF~~e-~~adp~~~a---~qds~i~qv~c~~t~k~Qe~~SL 398 (907)
T KOG2264|consen 330 VELTPLVPFQRKYLITLQGKIESD----NSS---LNEFSAFSEE-LSADPSRRA---VQDSPIVQVKCSFTCKNQENCSL 398 (907)
T ss_pred eecCcccchhhheeEEEEeeeccc----ccc---cchhhhhHHH-hccCCcccc---cccCceEEEEEeeccccCCCCCc
Confidence 556566688999999999988652 100 1123333323 333332210 0111112221
Q ss_pred -----cCCchhHHHHhhcCceec-ccCCCCC------chhHHHHHhcCceeEEeeCCeee
Q 005688 625 -----SLRSENYHEDLSSSVFCG-VLPGDGW------SGRMEDSILQGCIPVVIQCKFIF 672 (683)
Q Consensus 625 -----~~~~~~y~~~m~~S~FCL-~p~Gd~~------s~Rl~dAi~~GCIPViisD~~~l 672 (683)
|...+.-.+++++|+||| .||||+- -.|+++|+..||||||++|...|
T Consensus 399 pewalcg~~~~RrqLlk~STF~lilpp~d~rv~S~~~~~r~~eaL~~GavPviLg~~~~L 458 (907)
T KOG2264|consen 399 PEWALCGERERRRQLLKSSTFCLILPPGDPRVISEMFFQRFLEALQLGAVPVILGNSQLL 458 (907)
T ss_pred chhhhccchHHHHHHhccceeEEEecCCCcchhhHHHHHHHHHHHhcCCeeEEecccccc
Confidence 222345679999999999 6889864 47999999999999999988765
No 4
>KOG1225 consensus Teneurin-1 and related extracellular matrix proteins, contain EGF-like repeats [Signal transduction mechanisms; Extracellular structures]
Probab=99.63 E-value=7.8e-16 Score=168.94 Aligned_cols=121 Identities=33% Similarity=0.841 Sum_probs=98.4
Q ss_pred CcccCCCCCCCCCCCCEEeCCCCceeeCCCCcCCCCCccccCCCCCCCCCCCCCCCcccccCCCcccCCCceEeeCCCcc
Q 005688 116 EMIGGKSCKSDCSGQGVCNHELGQCRCFHGFRGKGCSERIHFQCNFPKTPELPYGRWVVSICPTHCDTTRAMCFCGEGTK 195 (683)
Q Consensus 116 ~~~~~~~C~~~C~~~G~C~~~~G~C~C~~G~~G~~Ce~~~~~~C~~~~~~~~~~g~~~~~~C~~~C~~~~g~C~C~~G~~ 195 (683)
+.+....|+..|+++|.|+ .|+|+|++||+|.+|++. .|.. .|+++..+.+|+|+|++||+
T Consensus 245 ~~c~~~~C~~~c~~~g~c~--~G~CIC~~Gf~G~dC~e~---~Cp~--------------~cs~~g~~~~g~CiC~~g~~ 305 (525)
T KOG1225|consen 245 PLCSTIYCPGGCTGRGQCV--EGRCICPPGFTGDDCDEL---VCPV--------------DCSGGGVCVDGECICNPGYS 305 (525)
T ss_pred CccccccCCCCCcccceEe--CCeEeCCCCCcCCCCCcc---cCCc--------------ccCCCceecCCEeecCCCcc
Confidence 3445567888899999998 899999999999999874 3543 35566666778999999999
Q ss_pred cCCCCCCCCCCCcccCCCCCCCCCCCCCccCCCCCccCCCCCCCccccCCcccccccccccccccccCCCCCCCCCcccc
Q 005688 196 YPNRPVAEACGFQVNLPSQPGAPKSTDWAKADLDNIFTTNGSKPGWCNVDPEEAYALKVQFKEECDCKYDGLLGQFCEVP 275 (683)
Q Consensus 196 G~~C~~~~~C~~~~~~~~~~~~~C~~gw~g~~c~~~~~~~C~~~G~C~~~~~~~~~~g~c~~g~C~C~~~G~~G~~C~~~ 275 (683)
|..|+... | +.+|+++|.| +.++|.|. +||+|..|++.
T Consensus 306 G~dCs~~~-c---------------------------padC~g~G~C-------------i~G~C~C~-~Gy~G~~C~~~ 343 (525)
T KOG1225|consen 306 GKDCSIRR-C---------------------------PADCSGHGKC-------------IDGECLCD-EGYTGELCIQR 343 (525)
T ss_pred cccccccc-C---------------------------CccCCCCCcc-------------cCCceEeC-CCCcCCccccc
Confidence 88885431 1 4578888888 47899998 99999999974
Q ss_pred CCCCcCCCCCCCceecCCeeecCCCcccCC
Q 005688 276 VSSTCVNQCSGHGHCRGGFCQCDSGWYGVD 305 (683)
Q Consensus 276 ~~~~C~~~C~~~G~C~~g~C~C~~G~~G~~ 305 (683)
.|+++|.|++| |+|+.||.|.+
T Consensus 344 -------~C~~~g~cv~g-C~C~~Gw~G~d 365 (525)
T KOG1225|consen 344 -------ACSGGGQCVNG-CKCKKGWRGPD 365 (525)
T ss_pred -------ccCCCceeccC-ceeccCccCCC
Confidence 39999999999 99999999999
No 5
>KOG1225 consensus Teneurin-1 and related extracellular matrix proteins, contain EGF-like repeats [Signal transduction mechanisms; Extracellular structures]
Probab=99.54 E-value=2.1e-14 Score=157.69 Aligned_cols=171 Identities=26% Similarity=0.469 Sum_probs=123.2
Q ss_pred cccccCcccCCCCCCCCCCCCEEeCCCCceeeCCCCcCCCCCccccCCCCCCCCCCCCCCCcccccCCCcccC--CCceE
Q 005688 111 EVDLVEMIGGKSCKSDCSGQGVCNHELGQCRCFHGFRGKGCSERIHFQCNFPKTPELPYGRWVVSICPTHCDT--TRAMC 188 (683)
Q Consensus 111 ~~~~~~~~~~~~C~~~C~~~G~C~~~~G~C~C~~G~~G~~Ce~~~~~~C~~~~~~~~~~g~~~~~~C~~~C~~--~~g~C 188 (683)
..+.++.++...|+++|+.||.+. .+.|.+..+++|..|... .|+.. ++....-..++..|.. ..+.|
T Consensus 167 ~~~~~~~~g~~~~~~~~~~hg~~~--~~~~l~~~~~s~~~~~~~---~~~~~-----~~~~~r~~~~~~~~~~~~~~~ic 236 (525)
T KOG1225|consen 167 PNPFGAECGQYKCPNDGSGHGRYY--FGNCLSGISASGETCNQL---GCNDD-----CFRTGRCREGRCFCTAGFFDGIC 236 (525)
T ss_pred CCccccccceecCCcCCCCCccce--ecccccccCcchhhhhcc---cCCcc-----ceeccccccCcccccccccCcee
Confidence 344556677788899999999998 899999999999999753 22211 0100000011122221 24589
Q ss_pred eeCCCcccCCCCCCCCCCCc-ccCCCCC--CCCCCCCCccCCCCCc-cCCCCCCCccccCCcccccccccccccccccCC
Q 005688 189 FCGEGTKYPNRPVAEACGFQ-VNLPSQP--GAPKSTDWAKADLDNI-FTTNGSKPGWCNVDPEEAYALKVQFKEECDCKY 264 (683)
Q Consensus 189 ~C~~G~~G~~C~~~~~C~~~-~~~~~~~--~~~C~~gw~g~~c~~~-~~~~C~~~G~C~~~~~~~~~~g~c~~g~C~C~~ 264 (683)
.|..+|+|+.|.. ..|... .....|. .|.|++||+|.+|+.. ++.+|++++.| ++++|+|.
T Consensus 237 ~c~~~~~g~~c~~-~~C~~~c~~~g~c~~G~CIC~~Gf~G~dC~e~~Cp~~cs~~g~~-------------~~g~CiC~- 301 (525)
T KOG1225|consen 237 ECPEGYFGPLCST-IYCPGGCTGRGQCVEGRCICPPGFTGDDCDELVCPVDCSGGGVC-------------VDGECICN- 301 (525)
T ss_pred ecCCceeCCcccc-ccCCCCCcccceEeCCeEeCCCCCcCCCCCcccCCcccCCCcee-------------cCCEeecC-
Confidence 9999999999863 233221 1112232 3458999999999963 35557676666 57899999
Q ss_pred CCCCCCCccccCCCCcCCCCCCCceecCCeeecCCCcccCCCCCC
Q 005688 265 DGLLGQFCEVPVSSTCVNQCSGHGHCRGGFCQCDSGWYGVDCSIP 309 (683)
Q Consensus 265 ~G~~G~~C~~~~~~~C~~~C~~~G~C~~g~C~C~~G~~G~~C~~~ 309 (683)
+||+|..|++. .|+.+|+++|.|++|+|+|.+||+|..|+++
T Consensus 302 ~g~~G~dCs~~---~cpadC~g~G~Ci~G~C~C~~Gy~G~~C~~~ 343 (525)
T KOG1225|consen 302 PGYSGKDCSIR---RCPADCSGHGKCIDGECLCDEGYTGELCIQR 343 (525)
T ss_pred CCccccccccc---cCCccCCCCCcccCCceEeCCCCcCCccccc
Confidence 99999999986 7999999999999999999999999999998
No 6
>KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures]
Probab=99.45 E-value=2e-13 Score=151.96 Aligned_cols=143 Identities=25% Similarity=0.517 Sum_probs=102.6
Q ss_pred CCCCCCEEeCCCCceeeCCCCcCCCCCccccCCCCCCCC-CCCCCCCcccccCCCcccCCCceEeeCCCcc----cCCCC
Q 005688 126 DCSGQGVCNHELGQCRCFHGFRGKGCSERIHFQCNFPKT-PELPYGRWVVSICPTHCDTTRAMCFCGEGTK----YPNRP 200 (683)
Q Consensus 126 ~C~~~G~C~~~~G~C~C~~G~~G~~Ce~~~~~~C~~~~~-~~~~~g~~~~~~C~~~C~~~~g~C~C~~G~~----G~~C~ 200 (683)
.|++||+++ .|+|.|.+||.|..||-.. ++.+... .+.|-..-....|+|.++|.-|+|.|..... |+.|+
T Consensus 468 ~C~g~G~~~--CG~C~C~~G~~G~~CEC~~--~~~ss~~~~~~Cr~~~~~~vCSgrG~C~CGqC~C~~~~~~~i~G~fCE 543 (783)
T KOG1226|consen 468 LCHGNGTFV--CGQCRCDEGWLGKKCECST--DELSSSEEEDKCRENSDSPVCSGRGDCVCGQCVCHKPDNGKIYGKFCE 543 (783)
T ss_pred ccCCCCcEE--ecceecCCCCCCCcccCCc--cccCcHhHHhhccCCCCCCCcCCCCcEeCCceEecCCCCCceeeeeee
Confidence 599999999 9999999999999999531 1211100 0011111122379999999999999998776 77774
Q ss_pred CCCCCCCcccCCCCCCCCCCCCCccCCCCCccCCCCCCCccccCCcccccccccccccccccCCCCCCCCCccccC-CCC
Q 005688 201 VAEACGFQVNLPSQPGAPKSTDWAKADLDNIFTTNGSKPGWCNVDPEEAYALKVQFKEECDCKYDGLLGQFCEVPV-SST 279 (683)
Q Consensus 201 ~~~~C~~~~~~~~~~~~~C~~gw~g~~c~~~~~~~C~~~G~C~~~~~~~~~~g~c~~g~C~C~~~G~~G~~C~~~~-~~~ 279 (683)
-.+. .|+...+.-|.++|.|. .|+|.|. +||+|..|+.+. .+.
T Consensus 544 CDnf----------------------sC~r~~g~lC~g~G~C~-------------CG~CvC~-~GwtG~~C~C~~std~ 587 (783)
T KOG1226|consen 544 CDNF----------------------SCERHKGVLCGGHGRCE-------------CGRCVCN-PGWTGSACNCPLSTDT 587 (783)
T ss_pred ccCc----------------------ccccccCcccCCCCeEe-------------CCcEEcC-CCCccCCCCCCCCCcc
Confidence 3211 12222245577888873 7899998 999999998763 345
Q ss_pred cCC----CCCCCceecCCeeecCCC-cccCCCCC
Q 005688 280 CVN----QCSGHGHCRGGFCQCDSG-WYGVDCSI 308 (683)
Q Consensus 280 C~~----~C~~~G~C~~g~C~C~~G-~~G~~C~~ 308 (683)
|.+ .|+++|+|.-|+|+|... |+|..|+.
T Consensus 588 C~~~~G~iCSGrG~C~Cg~C~C~~~~~sG~~CE~ 621 (783)
T KOG1226|consen 588 CESSDGQICSGRGTCECGRCKCTDPPYSGEFCEK 621 (783)
T ss_pred ccCCCCceeCCCceeeCCceEcCCCCcCcchhhc
Confidence 643 599999999999999776 99999997
No 7
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=99.07 E-value=5.2e-10 Score=127.57 Aligned_cols=200 Identities=23% Similarity=0.441 Sum_probs=121.6
Q ss_pred ccccccccCCCCcccccccCcccCCCC-CCCCCCC--------CEEeCCCC----ceeeCCCCcCCCCCccccCCCCCCC
Q 005688 97 EIGRWLSGCDSVAKEVDLVEMIGGKSC-KSDCSGQ--------GVCNHELG----QCRCFHGFRGKGCSERIHFQCNFPK 163 (683)
Q Consensus 97 ~~g~~~~~c~~~~~~~~~~~~~~~~~C-~~~C~~~--------G~C~~~~G----~C~C~~G~~G~~Ce~~~~~~C~~~~ 163 (683)
+.|.++.+|..++.+.+.... +..| |.+|-.+ -.|...+. .|+|.+||+|..|++ |..+.
T Consensus 882 T~G~~CdrCl~GyyGdP~lg~--g~~CrPCpCP~gp~Sg~~~A~sC~~d~~t~~ivC~C~~GY~G~RCe~-----CA~~~ 954 (1758)
T KOG0994|consen 882 TTGHSCDRCLDGYYGDPRLGS--GIGCRPCPCPDGPASGRQHADSCYLDTRTQQIVCHCQEGYSGSRCEI-----CADNH 954 (1758)
T ss_pred ccccchhhhhccccCCcccCC--CCCCCCCCCCCCCccchhccccccccccccceeeecccCccccchhh-----hcccc
Confidence 588899999888887765432 2445 4445221 24632222 799999999999997 77653
Q ss_pred CCCCC-CCCcccccCC--------CcccCCCceEe-------------eCCCcccC----CCCCCCCC------CCcccC
Q 005688 164 TPELP-YGRWVVSICP--------THCDTTRAMCF-------------CGEGTKYP----NRPVAEAC------GFQVNL 211 (683)
Q Consensus 164 ~~~~~-~g~~~~~~C~--------~~C~~~~g~C~-------------C~~G~~G~----~C~~~~~C------~~~~~~ 211 (683)
-++.. .|.|....|+ +.|+-.+|.|. |..||.|. +|..+. | ..+-++
T Consensus 955 fGnP~~GGtCq~CeC~~NiD~~d~~aCD~~TG~CLkCL~hTeG~hCe~Ck~Gf~GdA~~q~CqrC~-Cn~LGTn~~~~CD 1033 (1758)
T KOG0994|consen 955 FGNPSEGGTCQKCECSNNIDLYDPGACDVATGACLKCLYHTEGDHCEHCKDGFYGDALRQNCQRCV-CNFLGTNSTCHCD 1033 (1758)
T ss_pred cCCcccCCccccccccCCcCccCCCccchhhchhhhhhhcccccchhhccccchhHHHHhhhhhhe-ccccccCCccccc
Confidence 33221 4456666664 56777777653 66777765 221110 1 112233
Q ss_pred CCCCCCCCCCCCccCCCCCccCCC---CCCCc--cccCCcccccccccc--cccccccCCCCCCCCCccccCC-------
Q 005688 212 PSQPGAPKSTDWAKADLDNIFTTN---GSKPG--WCNVDPEEAYALKVQ--FKEECDCKYDGLLGQFCEVPVS------- 277 (683)
Q Consensus 212 ~~~~~~~C~~gw~g~~c~~~~~~~---C~~~G--~C~~~~~~~~~~g~c--~~g~C~C~~~G~~G~~C~~~~~------- 277 (683)
....+|+|.++-.|..|+.+-++. =+++| .|+.++. .+-.| .+|+|+|. +||.|..|++..+
T Consensus 1034 r~tGQCpClpNv~G~~CDqCA~N~w~laSG~GCe~C~Cd~~---~~pqCN~ftGQCqCk-pGfGGR~C~qCqel~WGdP~ 1109 (1758)
T KOG0994|consen 1034 RFTGQCPCLPNVQGVRCDQCAENHWNLASGEGCEPCNCDPI---GGPQCNEFTGQCQCK-PGFGGRTCSQCQELYWGDPN 1109 (1758)
T ss_pred cccCcCCCCcccccccccccccchhccccCCCCCccCCCcc---CCccccccccceecc-CCCCCcchhHHHHhhcCCCC
Confidence 445567899999999998654221 01111 1222221 11122 58999999 9999999987521
Q ss_pred CCcC-CCCCCCc----eec--CCeeecCCCcccCCCCC
Q 005688 278 STCV-NQCSGHG----HCR--GGFCQCDSGWYGVDCSI 308 (683)
Q Consensus 278 ~~C~-~~C~~~G----~C~--~g~C~C~~G~~G~~C~~ 308 (683)
..|. -.|...| .|. +|+|.|.+|-.|..|..
T Consensus 1110 ~~C~aCdCd~rG~~tpQCdr~tG~C~C~~Gv~G~rCdq 1147 (1758)
T KOG0994|consen 1110 EKCRACDCDPRGIETPQCDRATGRCVCRPGVGGPRCDQ 1147 (1758)
T ss_pred CCceecCCCCCCCCCCCccccCCceeecCCCCCcchhh
Confidence 1222 1455444 375 89999999999999986
No 8
>KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures]
Probab=99.05 E-value=3.8e-10 Score=126.14 Aligned_cols=134 Identities=26% Similarity=0.476 Sum_probs=97.3
Q ss_pred CCCCCCEEeCCCCceeeCCCCc----CCCCCccccCCCCCCCCCCCCCCCcccccCCCcccCCCceEeeCCCcccCCCCC
Q 005688 126 DCSGQGVCNHELGQCRCFHGFR----GKGCSERIHFQCNFPKTPELPYGRWVVSICPTHCDTTRAMCFCGEGTKYPNRPV 201 (683)
Q Consensus 126 ~C~~~G~C~~~~G~C~C~~G~~----G~~Ce~~~~~~C~~~~~~~~~~g~~~~~~C~~~C~~~~g~C~C~~G~~G~~C~~ 201 (683)
.|||+|.|. .|+|.|.+... |+.||-+ ...|... .+..|.++..|.-|+|+|.+||+|..|.-
T Consensus 515 vCSgrG~C~--CGqC~C~~~~~~~i~G~fCECD-nfsC~r~----------~g~lC~g~G~C~CG~CvC~~GwtG~~C~C 581 (783)
T KOG1226|consen 515 VCSGRGDCV--CGQCVCHKPDNGKIYGKFCECD-NFSCERH----------KGVLCGGHGRCECGRCVCNPGWTGSACNC 581 (783)
T ss_pred CcCCCCcEe--CCceEecCCCCCceeeeeeecc-Ccccccc----------cCcccCCCCeEeCCcEEcCCCCccCCCCC
Confidence 699999999 99999999887 9999964 3334432 23478888888889999999999998843
Q ss_pred CCCCCCcccCCCCCCCCCCCCCccCCCCCccCCCCCCCccccCCcccccccccccccccccCCCCCCCCCccccCCCCcC
Q 005688 202 AEACGFQVNLPSQPGAPKSTDWAKADLDNIFTTNGSKPGWCNVDPEEAYALKVQFKEECDCKYDGLLGQFCEVPVSSTCV 281 (683)
Q Consensus 202 ~~~C~~~~~~~~~~~~~C~~gw~g~~c~~~~~~~C~~~G~C~~~~~~~~~~g~c~~g~C~C~~~G~~G~~C~~~~~~~C~ 281 (683)
.. +.. .|....+..|+++|.| ..|+|.|.-++|.|.+||.. ..|+
T Consensus 582 ~~------std--------------~C~~~~G~iCSGrG~C-------------~Cg~C~C~~~~~sG~~CE~c--ptc~ 626 (783)
T KOG1226|consen 582 PL------STD--------------TCESSDGQICSGRGTC-------------ECGRCKCTDPPYSGEFCEKC--PTCP 626 (783)
T ss_pred CC------CCc--------------cccCCCCceeCCCcee-------------eCCceEcCCCCcCcchhhcC--CCCC
Confidence 21 111 2222224456777777 57899998344999999985 6888
Q ss_pred CCCCCCceec-CCeeecCCCcccCCCCCC
Q 005688 282 NQCSGHGHCR-GGFCQCDSGWYGVDCSIP 309 (683)
Q Consensus 282 ~~C~~~G~C~-~g~C~C~~G~~G~~C~~~ 309 (683)
..|..+..|+ -.. +..|+.+..|.+.
T Consensus 627 ~~C~~~~~CveC~~--~~~g~~~~~C~~~ 653 (783)
T KOG1226|consen 627 DPCAENKSCVECQA--FETGPVGDTCVEE 653 (783)
T ss_pred Ccccccccchhhcc--cccccccchHHHH
Confidence 8899988886 222 3445788887653
No 9
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=98.96 E-value=6.8e-10 Score=132.79 Aligned_cols=107 Identities=27% Similarity=0.654 Sum_probs=82.8
Q ss_pred CCC-CCCCCCCCEEeCCCC---ceeeCCCCcCCCCCccccCCCCCCCCCCCCCCCcccccCCCcccCCCceEeeCCCccc
Q 005688 121 KSC-KSDCSGQGVCNHELG---QCRCFHGFRGKGCSERIHFQCNFPKTPELPYGRWVVSICPTHCDTTRAMCFCGEGTKY 196 (683)
Q Consensus 121 ~~C-~~~C~~~G~C~~~~G---~C~C~~G~~G~~Ce~~~~~~C~~~~~~~~~~g~~~~~~C~~~C~~~~g~C~C~~G~~G 196 (683)
..| .++|+++|+|+...+ +|.|++-|.|..||.. ..+|.
T Consensus 3865 d~C~~npCqhgG~C~~~~~ggy~CkCpsqysG~~CEi~-~epC~------------------------------------ 3907 (4289)
T KOG1219|consen 3865 DPCNDNPCQHGGTCISQPKGGYKCKCPSQYSGNHCEID-LEPCA------------------------------------ 3907 (4289)
T ss_pred cccccCcccCCCEecCCCCCceEEeCcccccCcccccc-ccccc------------------------------------
Confidence 667 788999999986543 7999999999988874 22222
Q ss_pred CCCCCCCCCCCcccCCCCCCCCCCCCCccCCCCCccCCCCCCCccccCCcccccccccccccccccCCCCCCCCCccccC
Q 005688 197 PNRPVAEACGFQVNLPSQPGAPKSTDWAKADLDNIFTTNGSKPGWCNVDPEEAYALKVQFKEECDCKYDGLLGQFCEVPV 276 (683)
Q Consensus 197 ~~C~~~~~C~~~~~~~~~~~~~C~~gw~g~~c~~~~~~~C~~~G~C~~~~~~~~~~g~c~~g~C~C~~~G~~G~~C~~~~ 276 (683)
+++|..+|+|....+ ++.|.|+ .||+|..||..-
T Consensus 3908 ------------------------------------snPC~~GgtCip~~n---------~f~CnC~-~gyTG~~Ce~~G 3941 (4289)
T KOG1219|consen 3908 ------------------------------------SNPCLTGGTCIPFYN---------GFLCNCP-NGYTGKRCEARG 3941 (4289)
T ss_pred ------------------------------------CCCCCCCCEEEecCC---------CeeEeCC-CCccCceeeccc
Confidence 456677888866543 5689999 999999999874
Q ss_pred CCCcC-CCCCCCceec--CC--eeecCCCcccCCCCCCc
Q 005688 277 SSTCV-NQCSGHGHCR--GG--FCQCDSGWYGVDCSIPS 310 (683)
Q Consensus 277 ~~~C~-~~C~~~G~C~--~g--~C~C~~G~~G~~C~~~~ 310 (683)
...|. +.|.++|.|+ .| .|.|.+||.|..|...+
T Consensus 3942 i~eCs~n~C~~gg~C~n~~gsf~CncT~g~~gr~c~~~~ 3980 (4289)
T KOG1219|consen 3942 ISECSKNVCGTGGQCINIPGSFHCNCTPGILGRTCCAEK 3980 (4289)
T ss_pred ccccccccccCCceeeccCCceEeccChhHhcccCcccc
Confidence 45687 7899999997 44 89999999999995433
No 10
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.90 E-value=7.9e-09 Score=118.21 Aligned_cols=80 Identities=25% Similarity=0.630 Sum_probs=52.2
Q ss_pred cccccccccCCCCcccccccCcccCCCC-CCCCCC----CCEEeCCCCceeeCCCCcCCCCCccccCCCCCCCCCCCCCC
Q 005688 96 AEIGRWLSGCDSVAKEVDLVEMIGGKSC-KSDCSG----QGVCNHELGQCRCFHGFRGKGCSERIHFQCNFPKTPELPYG 170 (683)
Q Consensus 96 ~~~g~~~~~c~~~~~~~~~~~~~~~~~C-~~~C~~----~G~C~~~~G~C~C~~G~~G~~Ce~~~~~~C~~~~~~~~~~g 170 (683)
..+|.-+.+|..++++ .+...| +.+|+. +..|+..+|+|.|.+|-.|..|.. |..+. +-+.
T Consensus 789 nVVGR~CdqCApGtyG------FGPsGCk~CdC~~~Gs~~~~Cd~~tGQC~C~~g~ygrqCnq-----CqpG~---WgFP 854 (1758)
T KOG0994|consen 789 NVVGRRCDQCAPGTYG------FGPSGCKACDCNSIGSLDKYCDKITGQCQCRPGTYGRQCNQ-----CQPGY---WGFP 854 (1758)
T ss_pred ccccccccccCCcccC------cCCccCccccccccccccccccccccceeeccccchhhccc-----cCCCc---cCCC
Confidence 3478888888777764 233445 445554 446999999999999999999986 55432 2234
Q ss_pred CcccccCC---CcccCCCceEe
Q 005688 171 RWVVSICP---THCDTTRAMCF 189 (683)
Q Consensus 171 ~~~~~~C~---~~C~~~~g~C~ 189 (683)
.|....|+ ..|+..+|.|+
T Consensus 855 eCr~CqCNgHA~~Cd~~tGaCi 876 (1758)
T KOG0994|consen 855 ECRPCQCNGHADTCDPITGACI 876 (1758)
T ss_pred cCccccccCcccccCccccccc
Confidence 44455555 34666666554
No 11
>KOG1022 consensus Acetylglucosaminyltransferase EXT2/exostosin 2 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.59 E-value=2.7e-07 Score=99.19 Aligned_cols=210 Identities=16% Similarity=0.148 Sum_probs=122.6
Q ss_pred HHHHHHHhcCCCccCCcCCCceEEEeccceeeeeecCCCCcccccccccccchhHHHHHHHHHHHHHHcCcccccCCCcc
Q 005688 398 MAFYESILASPHRTLNGEEADFFFVPVLDSCIITRADDAPHLSAQEHRGLRSSLTLEFYKKAYEHIIEHYPYWNRTSGRD 477 (683)
Q Consensus 398 ~~~~e~L~~s~~rT~dP~eAdlFyVP~~~~~~~~~~~~~p~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~PyWnR~~GrD 477 (683)
..+.|+...|.+.|.|+.+|++|.--. .- +++ + .+ ..++ -..++++.-.|.| |.+
T Consensus 126 ~~lleA~~~S~yyt~n~N~aclf~Ps~-d~--lnQ----------n--~l----~~kl----~~~ala~l~~wdr--g~n 180 (691)
T KOG1022|consen 126 IALLEAWHLSFYYTFNYNGACLFMPSS-DE--LNQ----------N--PL----SWKL----EKVALAKLLVWDR--GVN 180 (691)
T ss_pred HHHHHHHHhccceecCCCceEEEecch-hh--hcc----------C--cc----hHHH----HHHHHhcccchhc--ccc
Confidence 457778888999999999999985433 11 111 1 11 1222 1233456678986 999
Q ss_pred EEEEeccCCCCccCCcccccceEEeeccCCccCCCcccceeccCCccccCcCCCCCCCccCCCCceeecCccCCChhhhh
Q 005688 478 HIWFFSWDEGACYAPKEIWNSMMLVHWGNTNSKHNHSTTAYWADNWDRISSSRRGNHSCFDPEKDLVLPAWKAPDAFVLR 557 (683)
Q Consensus 478 H~~v~~~d~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~kDvviP~~~~~~~~~~~ 557 (683)
|+.+.-=.-|.-. .|..+ +.|+.+. ....--.+.| .||++.||.||.|......
T Consensus 181 H~~fnmLpGg~p~-----yntal--dv~~d~a----~~~gggf~tW------------~yr~g~dv~ipv~Sp~~v~--- 234 (691)
T KOG1022|consen 181 HEGFNMLPGGDPT-----YNTAL--DVGQDEA----WYSGGGFGTW------------KYRKGNDVYIPVRSPGNVG--- 234 (691)
T ss_pred eeeEeeccCCCCC-----ccccc--cCCccee----EEecCCcCcc------------cccCCCccccccccccccC---
Confidence 9998322222111 11111 1111100 0000001223 6899999999998865211
Q ss_pred ccccCCCCCCCceeEEeccCCCCCCCCCCCCCCccHHHHHHHHHHhcCCCCCccccCcccCcceEEe--c--CCchhHHH
Q 005688 558 SKLWASPREKRKTLFYFNGNLGSAYPNGRPESSYSMGVRQKLAEEYGSSPNKEGKLGKQHAEDVIVT--S--LRSENYHE 633 (683)
Q Consensus 558 ~~~~~~~~~~R~~L~~F~G~~~~~~~~~~~~~~ys~~iR~~L~~~~~~~~~~~~~~g~~~~~~~~~~--~--~~~~~y~~ 633 (683)
.....+.+|..++.-.+. .|...+|..|.++........-.++.+..-+.... + +..-+|.+
T Consensus 235 --~~~~~~g~r~~~l~~~q~------------n~~pr~r~~l~el~~kh~e~~l~l~~c~nlsl~~r~~~qhH~~~~yp~ 300 (691)
T KOG1022|consen 235 --RAFLYDGSRYRVLQDCQE------------NYGPRIRVSLIELLSKHEERELELPFCLNLSLNSRGVRQHHFDVKYPS 300 (691)
T ss_pred --ccccCCccceeeeecccc------------ccchHhHHhHHHHHhhccceEEecchhccccccccchhhccccccccc
Confidence 112334566655443331 35667899888877665544444444332221111 1 23467999
Q ss_pred HhhcCceecccCCCCC-chhHHHHHhcCceeEEeeCCeee
Q 005688 634 DLSSSVFCGVLPGDGW-SGRMEDSILQGCIPVVIQCKFIF 672 (683)
Q Consensus 634 ~m~~S~FCL~p~Gd~~-s~Rl~dAi~~GCIPViisD~~~l 672 (683)
.+...+||+.-++..- ..-+.+-+.++|||||+.|.+.|
T Consensus 301 ~l~~~~fc~~~R~~r~gq~~lv~~~~a~c~pvi~vd~y~l 340 (691)
T KOG1022|consen 301 SLEFIGFCDGDRVTRGGQFHLVILGYASCAPVISVDIYLL 340 (691)
T ss_pred ccceeeeEeccccccCCccceehhhhcccceeeeeehhhh
Confidence 9999999998888654 34599999999999999998864
No 12
>KOG1836 consensus Extracellular matrix glycoprotein Laminin subunits alpha and gamma [Extracellular structures]
Probab=98.53 E-value=7.6e-07 Score=110.52 Aligned_cols=106 Identities=19% Similarity=0.316 Sum_probs=77.9
Q ss_pred CccccccccccccCCCCcccccccCcccCCCCCCCCCCC-CEEeCCCCceeeCCCCcCCCCCccccCCCCCCCCCCC---
Q 005688 92 APWKAEIGRWLSGCDSVAKEVDLVEMIGGKSCKSDCSGQ-GVCNHELGQCRCFHGFRGKGCSERIHFQCNFPKTPEL--- 167 (683)
Q Consensus 92 ~~~~~~~g~~~~~c~~~~~~~~~~~~~~~~~C~~~C~~~-G~C~~~~G~C~C~~G~~G~~Ce~~~~~~C~~~~~~~~--- 167 (683)
.......|+++++|..+++.+.-...-...-|+.+|++| .+|+..+|+|.|.+.-.|..|+. |..+..+..
T Consensus 698 ~C~~g~tG~~Ce~C~~gfrr~~~~~~~~~~c~~C~cngh~~~Cd~~tG~C~C~~~t~G~~C~~-----C~~GfYg~~~~~ 772 (1705)
T KOG1836|consen 698 TCPVGYTGQFCESCAPGFRRLSPQLGPFCPCIPCDCNGHSNICDPRTGQCKCKHNTFGGQCAQ-----CVDGFYGLPDLG 772 (1705)
T ss_pred cCCCCcccchhhhcchhhhcccccCCCCCcccccccCCccccccCCCCceecccCCCCCchhh-----hcCCCCCccccC
Confidence 344677999999999888765543222123337789997 79999999999999999999997 787766543
Q ss_pred CCCCcccccCCC------cccCCCceEe-eCCCcccCCCCCC
Q 005688 168 PYGRWVVSICPT------HCDTTRAMCF-CGEGTKYPNRPVA 202 (683)
Q Consensus 168 ~~g~~~~~~C~~------~C~~~~g~C~-C~~G~~G~~C~~~ 202 (683)
.+++|....|++ .++...+.|. |++||+|..|+.+
T Consensus 773 ~~~dC~~C~Cp~~~~~~~~~~~~~~iCk~Cp~gytG~rCe~c 814 (1705)
T KOG1836|consen 773 TSGDCQPCPCPNGGACGQTPEILEVVCKNCPPGYTGLRCEEC 814 (1705)
T ss_pred CCCCCccCCCCCChhhcCcCcccceecCCCCCCCcccccccC
Confidence 233466667763 3334457999 9999999999654
No 13
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=98.33 E-value=1e-06 Score=103.16 Aligned_cols=72 Identities=26% Similarity=0.595 Sum_probs=53.6
Q ss_pred CCC-CCCCCCCCEEeCCCC----ceeeCCCCcCCCCCccccCCCCCCCCCCCCCCCcccccCC------CcccCCCceEe
Q 005688 121 KSC-KSDCSGQGVCNHELG----QCRCFHGFRGKGCSERIHFQCNFPKTPELPYGRWVVSICP------THCDTTRAMCF 189 (683)
Q Consensus 121 ~~C-~~~C~~~G~C~~~~G----~C~C~~G~~G~~Ce~~~~~~C~~~~~~~~~~g~~~~~~C~------~~C~~~~g~C~ 189 (683)
+.| -++|.+.|+|....| +|+|++||+|++||.....+|+.+=-+ +..|..+.|. ..|+.++|+|.
T Consensus 1717 ~vC~lnpc~~~g~Cv~sp~a~GY~C~C~~g~~G~~Ce~~~dq~CPrGWWG---~P~CgpC~CavsKgfdp~CnKt~G~Cq 1793 (2531)
T KOG4289|consen 1717 DVCSLNPCENQGTCVRSPGAHGYTCECPPGYTGPYCELRADQPCPRGWWG---FPTCGPCNCAVSKGFDPDCNKTNGQCQ 1793 (2531)
T ss_pred chhcccccccCceeecCCCCCceeEECCCcccCcchhhhccCCCCCcccC---CCCccCccccccCCCCCCccccCccee
Confidence 556 578999999987665 899999999999998877788764221 2334444453 46888889999
Q ss_pred eCCCcc
Q 005688 190 CGEGTK 195 (683)
Q Consensus 190 C~~G~~ 195 (683)
|.+.++
T Consensus 1794 CKe~hy 1799 (2531)
T KOG4289|consen 1794 CKENHY 1799 (2531)
T ss_pred eccccc
Confidence 988765
No 14
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=98.27 E-value=8.2e-07 Score=103.86 Aligned_cols=94 Identities=26% Similarity=0.449 Sum_probs=65.6
Q ss_pred CC-ceeeCCCCcCCCCCccccCCCCCCCCCCCCCCCcccccCC--CcccCCC--ceEeeCCCcccCCCCCCCCCCCcccC
Q 005688 137 LG-QCRCFHGFRGKGCSERIHFQCNFPKTPELPYGRWVVSICP--THCDTTR--AMCFCGEGTKYPNRPVAEACGFQVNL 211 (683)
Q Consensus 137 ~G-~C~C~~G~~G~~Ce~~~~~~C~~~~~~~~~~g~~~~~~C~--~~C~~~~--g~C~C~~G~~G~~C~~~~~C~~~~~~ 211 (683)
.| .|+|++||+|++||.. .+.|-.+ +|. +.|--.. .+|.|.+||+|..|+....-+.
T Consensus 1220 nglrCrCPpGFTgd~CeTe-iDlCYs~-------------pC~nng~C~srEggYtCeCrpg~tGehCEvs~~agr---- 1281 (2531)
T KOG4289|consen 1220 NGLRCRCPPGFTGDYCETE-IDLCYSG-------------PCGNNGRCRSREGGYTCECRPGFTGEHCEVSARAGR---- 1281 (2531)
T ss_pred CceeEeCCCCCCcccccch-hHhhhcC-------------CCCCCCceEEecCceeEEecCCccccceeeecccCc----
Confidence 45 7999999999999875 5566553 454 3343333 3899999999988876543221
Q ss_pred CCCCCCCCCCCCccCCCCCccCCCCCCCccccCCcccccccccccccccccCCCCCCCCCcccc
Q 005688 212 PSQPGAPKSTDWAKADLDNIFTTNGSKPGWCNVDPEEAYALKVQFKEECDCKYDGLLGQFCEVP 275 (683)
Q Consensus 212 ~~~~~~~C~~gw~g~~c~~~~~~~C~~~G~C~~~~~~~~~~g~c~~g~C~C~~~G~~G~~C~~~ 275 (683)
| .+..|.|+|+|.+..+. ...|.|++..|+++.|+..
T Consensus 1282 -------C------------vpGvC~nggtC~~~~ng--------gf~c~Cp~ge~e~prC~v~ 1318 (2531)
T KOG4289|consen 1282 -------C------------VPGVCKNGGTCVNLLNG--------GFCCHCPYGEFEDPRCEVT 1318 (2531)
T ss_pred -------c------------ccceecCCCEEeecCCC--------ceeccCCCcccCCCceEEE
Confidence 1 15568889999776541 4589999777899999863
No 15
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=98.00 E-value=4.6e-06 Score=101.36 Aligned_cols=68 Identities=26% Similarity=0.650 Sum_probs=57.6
Q ss_pred CCCCCCCccccCCcccccccccccccccccCCCCCCCCCccccCCCCcCCCCCCCceec----CCeeecCCCcccCCCCC
Q 005688 233 TTNGSKPGWCNVDPEEAYALKVQFKEECDCKYDGLLGQFCEVPVSSTCVNQCSGHGHCR----GGFCQCDSGWYGVDCSI 308 (683)
Q Consensus 233 ~~~C~~~G~C~~~~~~~~~~g~c~~g~C~C~~~G~~G~~C~~~~~~~C~~~C~~~G~C~----~g~C~C~~G~~G~~C~~ 308 (683)
.++|+++|.|+..+. ..++|.|+ +-|+|..||+..+.+-+++|..+|+|+ +..|.|+.||+|..|+.
T Consensus 3869 ~npCqhgG~C~~~~~--------ggy~CkCp-sqysG~~CEi~~epC~snPC~~GgtCip~~n~f~CnC~~gyTG~~Ce~ 3939 (4289)
T KOG1219|consen 3869 DNPCQHGGTCISQPK--------GGYKCKCP-SQYSGNHCEIDLEPCASNPCLTGGTCIPFYNGFLCNCPNGYTGKRCEA 3939 (4289)
T ss_pred cCcccCCCEecCCCC--------CceEEeCc-ccccCcccccccccccCCCCCCCCEEEecCCCeeEeCCCCccCceeec
Confidence 678999999987654 25699999 999999999985544468999999997 34899999999999997
Q ss_pred C
Q 005688 309 P 309 (683)
Q Consensus 309 ~ 309 (683)
.
T Consensus 3940 ~ 3940 (4289)
T KOG1219|consen 3940 R 3940 (4289)
T ss_pred c
Confidence 6
No 16
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=97.96 E-value=7.6e-06 Score=55.74 Aligned_cols=27 Identities=41% Similarity=1.058 Sum_probs=24.8
Q ss_pred CCCCCCCEEeCCCCceeeCCCCcCCCC
Q 005688 125 SDCSGQGVCNHELGQCRCFHGFRGKGC 151 (683)
Q Consensus 125 ~~C~~~G~C~~~~G~C~C~~G~~G~~C 151 (683)
..|++||+|+...|+|.|++||+|++|
T Consensus 6 ~~C~~~G~C~~~~g~C~C~~g~~G~~C 32 (32)
T PF07974_consen 6 NICSGHGTCVSPCGRCVCDSGYTGPDC 32 (32)
T ss_pred CccCCCCEEeCCCCEEECCCCCcCCCC
Confidence 469999999987799999999999987
No 17
>KOG1217 consensus Fibrillins and related proteins containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=97.84 E-value=0.00013 Score=81.82 Aligned_cols=65 Identities=29% Similarity=0.729 Sum_probs=46.9
Q ss_pred CCCCccccCCcccccccccccccccccCCCCCCCCCc-cccCCCCcC-----CCCCCCceec------CCeeecCCCccc
Q 005688 236 GSKPGWCNVDPEEAYALKVQFKEECDCKYDGLLGQFC-EVPVSSTCV-----NQCSGHGHCR------GGFCQCDSGWYG 303 (683)
Q Consensus 236 C~~~G~C~~~~~~~~~~g~c~~g~C~C~~~G~~G~~C-~~~~~~~C~-----~~C~~~G~C~------~g~C~C~~G~~G 303 (683)
|.+++.|..... .+.|.|+ +||+|..| +......|. ..|.++++|. ...|.|.+||.|
T Consensus 280 c~~~~~C~~~~~---------~~~C~C~-~g~~g~~~~~~~~~~~C~~~~~~~~c~~g~~C~~~~~~~~~~C~c~~~~~g 349 (487)
T KOG1217|consen 280 CPNGGTCVNVPG---------SYRCTCP-PGFTGRLCTECVDVDECSPRNAGGPCANGGTCNTLGSFGGFRCACGPGFTG 349 (487)
T ss_pred cCCCCeeecCCC---------cceeeCC-CCCCCCCCccccccccccccccCCcCCCCcccccCCCCCCCCcCCCCCCCC
Confidence 667777765432 3789999 99999998 221123553 3588888993 225999999999
Q ss_pred CCCCCCc
Q 005688 304 VDCSIPS 310 (683)
Q Consensus 304 ~~C~~~~ 310 (683)
..|+...
T Consensus 350 ~~C~~~~ 356 (487)
T KOG1217|consen 350 RRCEDSN 356 (487)
T ss_pred CccccCC
Confidence 9999874
No 18
>KOG1836 consensus Extracellular matrix glycoprotein Laminin subunits alpha and gamma [Extracellular structures]
Probab=97.74 E-value=0.00019 Score=89.88 Aligned_cols=185 Identities=22% Similarity=0.447 Sum_probs=119.3
Q ss_pred ccccccccccCCCCcccccccCcccCCCC-CCCCCCC------CEEeCCCCce-eeCCCCcCCCCCccccCCCCCCCCCC
Q 005688 95 KAEIGRWLSGCDSVAKEVDLVEMIGGKSC-KSDCSGQ------GVCNHELGQC-RCFHGFRGKGCSERIHFQCNFPKTPE 166 (683)
Q Consensus 95 ~~~~g~~~~~c~~~~~~~~~~~~~~~~~C-~~~C~~~------G~C~~~~G~C-~C~~G~~G~~Ce~~~~~~C~~~~~~~ 166 (683)
++.+|.-+..|..+++..+.........| +.+|+++ |.|+..+|.| .|-.+.+|..|+. |..+...+
T Consensus 804 ~gytG~rCe~c~dgyfg~p~~~~~~~~~c~~c~c~~n~dp~~~g~c~~~tg~c~~ci~nT~g~~cd~-----c~~g~~gd 878 (1705)
T KOG1836|consen 804 PGYTGLRCEECADGYFGNPLGHDGDVRPCQSCQCNFNVDPNAFGNCNRLTGECLKCIHNTAGEYCDL-----CKEGYFGD 878 (1705)
T ss_pred CCCcccccccCCCccccCCCCCCCCcccCccceeccccCccccccccccccceeeccCCcccccccc-----cccCcccc
Confidence 45688899999888887776655444567 6678764 7899999999 8999999999987 55443322
Q ss_pred ----CCCCCcccccC--------CCcccCCCceEeeCCCcccCCCCCCCCCCCcccCCCCCCCCCCCCCccCCCCCccCC
Q 005688 167 ----LPYGRWVVSIC--------PTHCDTTRAMCFCGEGTKYPNRPVAEACGFQVNLPSQPGAPKSTDWAKADLDNIFTT 234 (683)
Q Consensus 167 ----~~~g~~~~~~C--------~~~C~~~~g~C~C~~G~~G~~C~~~~~C~~~~~~~~~~~~~C~~gw~g~~c~~~~~~ 234 (683)
.+.+.+....| ...|+..+|+|.|.+.-.|..|..+..-.+... .+..|+ ..
T Consensus 879 ~l~~~p~~~c~~c~c~p~gs~~~~~~c~~~tGQcec~~~v~g~~c~~c~~g~fnl~-------------s~~gC~---~c 942 (1705)
T KOG1836|consen 879 PLAPNPEDKCFACGCVPAGSELPSLTCNPVTGQCECKPNVEGRDCLYCFKGFFNLN-------------SGVGCE---PC 942 (1705)
T ss_pred ccCCCcCCccccccCccCCcccccccCCCcccceeccCCCCccccccccccccccC-------------CCCCcc---cc
Confidence 12233333334 145888999999999999888744322111111 112233 33
Q ss_pred CCCCCccccCCcccccccccccccccccCCCCCCCCCccccCC-------CCcC-CCCCCCc----eec--CCeeecCCC
Q 005688 235 NGSKPGWCNVDPEEAYALKVQFKEECDCKYDGLLGQFCEVPVS-------STCV-NQCSGHG----HCR--GGFCQCDSG 300 (683)
Q Consensus 235 ~C~~~G~C~~~~~~~~~~g~c~~g~C~C~~~G~~G~~C~~~~~-------~~C~-~~C~~~G----~C~--~g~C~C~~G 300 (683)
+|...|.=+.++. ..+|+|.|. +|.+|..|+.... ..|- -.|...| .|+ +|+|.|.++
T Consensus 943 ~c~~~gs~~~~c~-------~~tGqc~c~-~gVtgqrc~qc~~~~~~~~~~gc~~c~c~~~Gs~~~qc~~~~G~c~c~~~ 1014 (1705)
T KOG1836|consen 943 NCDPTGSESSDCD-------VGTGQCYCR-PGVTGQRCDQCETYHFGFQTEGCGLCECDPLGSRGFQCDPEDGQCPCRPG 1014 (1705)
T ss_pred ccccccccccccc-------ccCCceeee-cCccccccCccccCcccccccCCcceecccCCcccceecccCCeeeecCC
Confidence 3444443211111 037899998 9999999986420 1111 1355555 586 899999999
Q ss_pred cccCCCCC
Q 005688 301 WYGVDCSI 308 (683)
Q Consensus 301 ~~G~~C~~ 308 (683)
+.|..|..
T Consensus 1015 ~~g~~c~~ 1022 (1705)
T KOG1836|consen 1015 FEGRRCDQ 1022 (1705)
T ss_pred CCCccccc
Confidence 99987765
No 19
>KOG4260 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=5.9e-05 Score=75.18 Aligned_cols=130 Identities=20% Similarity=0.368 Sum_probs=71.4
Q ss_pred eCCCCcCCCCCccccCCCCCCCCCCCCCCCcccccCCCcccCC-------CceEeeCCCcccCCCCCCC-----------
Q 005688 142 CFHGFRGKGCSERIHFQCNFPKTPELPYGRWVVSICPTHCDTT-------RAMCFCGEGTKYPNRPVAE----------- 203 (683)
Q Consensus 142 C~~G~~G~~Ce~~~~~~C~~~~~~~~~~g~~~~~~C~~~C~~~-------~g~C~C~~G~~G~~C~~~~----------- 203 (683)
|++|..|++|.. |+.+.- ..|.|+..|. .|.|.|..||.|+.|..+.
T Consensus 132 Cp~gtyGpdCl~-----Cpggse----------r~C~GnG~C~GdGsR~GsGkCkC~~GY~Gp~C~~Cg~eyfes~Rne~ 196 (350)
T KOG4260|consen 132 CPDGTYGPDCLQ-----CPGGSE----------RPCFGNGSCHGDGSREGSGKCKCETGYTGPLCRYCGIEYFESSRNEQ 196 (350)
T ss_pred cCCCCcCCcccc-----CCCCCc----------CCcCCCCcccCCCCCCCCCcccccCCCCCccccccchHHHHhhcccc
Confidence 899999999986 543321 1354333221 5799999999999984321
Q ss_pred ---------CCCCcccCCCCCCC-CCCCCCccC--CCCCcc-----CCCCCCCccccCCcccccccccccccccccCCCC
Q 005688 204 ---------ACGFQVNLPSQPGA-PKSTDWAKA--DLDNIF-----TTNGSKPGWCNVDPEEAYALKVQFKEECDCKYDG 266 (683)
Q Consensus 204 ---------~C~~~~~~~~~~~~-~C~~gw~g~--~c~~~~-----~~~C~~~G~C~~~~~~~~~~g~c~~g~C~C~~~G 266 (683)
.|...++.....+| .|..||.-. .|-++. +.+|..+..|.+..+ .++|.++ +|
T Consensus 197 ~lvCt~Ch~~C~~~Csg~~~k~C~kCkkGW~lde~gCvDvnEC~~ep~~c~~~qfCvNteG---------Sf~C~dk-~G 266 (350)
T KOG4260|consen 197 HLVCTACHEGCLGVCSGESSKGCSKCKKGWKLDEEGCVDVNECQNEPAPCKAHQFCVNTEG---------SFKCEDK-EG 266 (350)
T ss_pred cchhhhhhhhhhcccCCCCCCChhhhcccceecccccccHHHHhcCCCCCChhheeecCCC---------ceEeccc-cc
Confidence 12111111111222 267888543 221111 344444444543322 4689998 99
Q ss_pred CCCC--CccccCCCCcCCCCC-CCceec----CCeeecCCCc
Q 005688 267 LLGQ--FCEVPVSSTCVNQCS-GHGHCR----GGFCQCDSGW 301 (683)
Q Consensus 267 ~~G~--~C~~~~~~~C~~~C~-~~G~C~----~g~C~C~~G~ 301 (683)
|.+. .|+ .|...|. .++.|. ..+|+|..|.
T Consensus 267 y~~g~d~C~-----~~~d~~~~kn~~c~ni~~~~r~v~f~~~ 303 (350)
T KOG4260|consen 267 YKKGVDECQ-----FCADVCASKNRPCMNIDGQYRCVCFSGL 303 (350)
T ss_pred ccCChHHhh-----hhhhhcccCCCCcccCCccEEEEecccc
Confidence 9872 233 3334443 356674 3378887775
No 20
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=97.61 E-value=4.9e-05 Score=51.81 Aligned_cols=25 Identities=64% Similarity=1.379 Sum_probs=22.9
Q ss_pred CCCCCCceec--CCeeecCCCcccCCC
Q 005688 282 NQCSGHGHCR--GGFCQCDSGWYGVDC 306 (683)
Q Consensus 282 ~~C~~~G~C~--~g~C~C~~G~~G~~C 306 (683)
..|++||+|+ .++|+|.+||+|.+|
T Consensus 6 ~~C~~~G~C~~~~g~C~C~~g~~G~~C 32 (32)
T PF07974_consen 6 NICSGHGTCVSPCGRCVCDSGYTGPDC 32 (32)
T ss_pred CccCCCCEEeCCCCEEECCCCCcCCCC
Confidence 4699999999 799999999999987
No 21
>KOG3512 consensus Netrin, axonal chemotropic factor [Signal transduction mechanisms]
Probab=97.52 E-value=0.00063 Score=72.85 Aligned_cols=55 Identities=18% Similarity=0.365 Sum_probs=40.6
Q ss_pred ccccccCCCCCCCCCccccC---------CCCcC-------CCCCCCceecCCeeecCCCcccCCCCCCccC
Q 005688 257 KEECDCKYDGLLGQFCEVPV---------SSTCV-------NQCSGHGHCRGGFCQCDSGWYGVDCSIPSVM 312 (683)
Q Consensus 257 ~g~C~C~~~G~~G~~C~~~~---------~~~C~-------~~C~~~G~C~~g~C~C~~G~~G~~C~~~~~~ 312 (683)
+|+|.|+ +|.+|..|+.+. ...|. ..|+++++=.+-.|.|+.++.|..|+++..-
T Consensus 413 tGqCpCk-eGvtG~tCnrCa~gyqqsrs~vapcik~p~~~~~~~~s~ve~qd~~s~Ck~~~~~~r~n~kkfc 483 (592)
T KOG3512|consen 413 TGQCPCK-EGVTGLTCNRCAPGYQQSRSPVAPCIKIPTDAPTLGSSGVEPQDQCSKCKASPGGKRLNQKKFC 483 (592)
T ss_pred CCcccCC-CCCcccccccccchhhcccCCCcCceecCCCCccccCCCCcchhccccCCCCCcceeccccccC
Confidence 8999999 999999998542 11221 2466666633557899999999999998754
No 22
>KOG1217 consensus Fibrillins and related proteins containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=97.29 E-value=0.0028 Score=70.99 Aligned_cols=150 Identities=22% Similarity=0.511 Sum_probs=96.8
Q ss_pred CCCCCEEeCC-----CCceeeCCCCcCCCCCccccCCCCCCCCCCCCCCCcccccCC--CcccCCC--ceEeeCCCcccC
Q 005688 127 CSGQGVCNHE-----LGQCRCFHGFRGKGCSERIHFQCNFPKTPELPYGRWVVSICP--THCDTTR--AMCFCGEGTKYP 197 (683)
Q Consensus 127 C~~~G~C~~~-----~G~C~C~~G~~G~~Ce~~~~~~C~~~~~~~~~~g~~~~~~C~--~~C~~~~--g~C~C~~G~~G~ 197 (683)
+..++.|... .-.|.|..||.|..|+.. .+.|..... .|. +.|.... ..|.|..||.|.
T Consensus 136 ~~~~~~c~~~~~~~~~~~c~C~~g~~~~~~~~~-~~~C~~~~~-----------~c~~~~~C~~~~~~~~C~c~~~~~~~ 203 (487)
T KOG1217|consen 136 CCIDGSCSNGPGSVGPFRCSCTEGYEGEPCETD-LDECIQYSS-----------PCQNGGTCVNTGGSYLCSCPPGYTGS 203 (487)
T ss_pred eeCchhhcCCCCCCCceeeeeCCCccccccccc-ccccccCCC-----------CcCCCcccccCCCCeeEeCCCCccCC
Confidence 4567777643 237999999999999874 245653221 233 4455544 379999999999
Q ss_pred CCCCC---CCCCCcccCCCCCCCCCCCCCccCCCCCccCCCCCCC-ccccCCcccccccccccccccccCCCCCCCCCc-
Q 005688 198 NRPVA---EACGFQVNLPSQPGAPKSTDWAKADLDNIFTTNGSKP-GWCNVDPEEAYALKVQFKEECDCKYDGLLGQFC- 272 (683)
Q Consensus 198 ~C~~~---~~C~~~~~~~~~~~~~C~~gw~g~~c~~~~~~~C~~~-G~C~~~~~~~~~~g~c~~g~C~C~~~G~~G~~C- 272 (683)
.|... ..|. .. ..+.+..++.+..|+.. ...|... +.|..... ..+|.|+ +||++..+
T Consensus 204 ~~~~~~~~~~c~---~~---~~~~~~~g~~~~~c~~~-~~~~~~~~~~c~~~~~---------~~~C~~~-~g~~~~~~~ 266 (487)
T KOG1217|consen 204 TCETTGNGGTCV---DS---VACSCPPGARGPECEVS-IVECASGDGTCVNTVG---------SYTCRCP-EGYTGDACV 266 (487)
T ss_pred cCcCCCCCceEe---cc---eeccCCCCCCCCCcccc-cccccCCCCcccccCC---------ceeeeCC-CCccccccc
Confidence 88654 1111 10 22446677777777632 1223322 77755432 4689998 99999984
Q ss_pred -cccCCCCcCC--CCCCCceecC----CeeecCCCcccCCC
Q 005688 273 -EVPVSSTCVN--QCSGHGHCRG----GFCQCDSGWYGVDC 306 (683)
Q Consensus 273 -~~~~~~~C~~--~C~~~G~C~~----g~C~C~~G~~G~~C 306 (683)
... ...|.. .|.++++|.. ..|.|++||+|..|
T Consensus 267 ~~~~-~~~C~~~~~c~~~~~C~~~~~~~~C~C~~g~~g~~~ 306 (487)
T KOG1217|consen 267 TCVD-VDSCALIASCPNGGTCVNVPGSYRCTCPPGFTGRLC 306 (487)
T ss_pred eeee-ccccCCCCccCCCCeeecCCCcceeeCCCCCCCCCC
Confidence 111 235653 3899999972 58999999999999
No 23
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=97.16 E-value=0.0013 Score=74.56 Aligned_cols=140 Identities=21% Similarity=0.558 Sum_probs=82.4
Q ss_pred CCCCCCCCEEeCCCC---ceeeCCCCcC--CCCCccccCCCCCCCCCCCCCCCcccccCC--CcccCCCc--eEeeCCCc
Q 005688 124 KSDCSGQGVCNHELG---QCRCFHGFRG--KGCSERIHFQCNFPKTPELPYGRWVVSICP--THCDTTRA--MCFCGEGT 194 (683)
Q Consensus 124 ~~~C~~~G~C~~~~G---~C~C~~G~~G--~~Ce~~~~~~C~~~~~~~~~~g~~~~~~C~--~~C~~~~g--~C~C~~G~ 194 (683)
+.-|..+..|...+| +|.|..||.| .+|... ++|.... .+|. ..|....| +|.|..||
T Consensus 699 sh~cdt~a~C~pg~~~~~tcecs~g~~gdgr~c~d~--~eca~~~-----------~~CGp~s~Cin~pg~~rceC~~gy 765 (1289)
T KOG1214|consen 699 SHMCDTTARCHPGTGVDYTCECSSGYQGDGRNCVDE--NECATGF-----------HRCGPNSVCINLPGSYRCECRSGY 765 (1289)
T ss_pred CcccCCCccccCCCCcceEEEEeeccCCCCCCCCCh--hhhccCC-----------CCCCCCceeecCCCceeEEEeecc
Confidence 344666778885444 8999999975 568763 4666532 2454 45666655 78877776
Q ss_pred ccC----CCCCCCCCCCcccCCCCCCCCCCCCCccCCCCCccCCCCCCCccc--cCCcccccccccccccccccCCCCCC
Q 005688 195 KYP----NRPVAEACGFQVNLPSQPGAPKSTDWAKADLDNIFTTNGSKPGWC--NVDPEEAYALKVQFKEECDCKYDGLL 268 (683)
Q Consensus 195 ~G~----~C~~~~~C~~~~~~~~~~~~~C~~gw~g~~c~~~~~~~C~~~G~C--~~~~~~~~~~g~c~~g~C~C~~~G~~ 268 (683)
... +|-.- ..+ -+ -..|++. ..+|.-.|.| +.... ..+.|.|. +||.
T Consensus 766 ~F~dd~~tCV~i-------~~p-ap---------~n~Ce~g-~h~C~i~g~a~c~~hGg--------s~y~C~CL-PGfs 818 (1289)
T KOG1214|consen 766 EFADDRHTCVLI-------TPP-AP---------ANPCEDG-SHTCAIAGQARCVHHGG--------STYSCACL-PGFS 818 (1289)
T ss_pred eeccCCcceEEe-------cCC-CC---------CCccccC-ccccCcCCceEEEecCC--------ceEEEeec-CCcc
Confidence 422 22100 000 00 0112210 2344444444 22111 25799998 9999
Q ss_pred CC--CccccCCCCc-CCCCCCCceec----CCeeecCCCcccCC
Q 005688 269 GQ--FCEVPVSSTC-VNQCSGHGHCR----GGFCQCDSGWYGVD 305 (683)
Q Consensus 269 G~--~C~~~~~~~C-~~~C~~~G~C~----~g~C~C~~G~~G~~ 305 (683)
|+ .|.. .+.| ++.|..+.+|. ...|+|.+||+|..
T Consensus 819 GDG~~c~d--vDeC~psrChp~A~CyntpgsfsC~C~pGy~GDG 860 (1289)
T KOG1214|consen 819 GDGHQCTD--VDECSPSRCHPAATCYNTPGSFSCRCQPGYYGDG 860 (1289)
T ss_pred CCcccccc--ccccCccccCCCceEecCCCcceeecccCccCCC
Confidence 75 3443 2455 47899999996 34899999999874
No 24
>smart00051 DSL delta serrate ligand.
Probab=97.10 E-value=0.00047 Score=54.93 Aligned_cols=46 Identities=26% Similarity=0.569 Sum_probs=37.1
Q ss_pred cccccCCCCCCCCCccccCCCCcCCCCCCCceec-CCeeecCCCcccCCC
Q 005688 258 EECDCKYDGLLGQFCEVPVSSTCVNQCSGHGHCR-GGFCQCDSGWYGVDC 306 (683)
Q Consensus 258 g~C~C~~~G~~G~~C~~~~~~~C~~~C~~~G~C~-~g~C~C~~G~~G~~C 306 (683)
.+-.|+ ++|.|..|+.. ..+.+++.++.+|. .|.|.|.+||+|.+|
T Consensus 17 ~rv~C~-~~~yG~~C~~~--C~~~~d~~~~~~Cd~~G~~~C~~Gw~G~~C 63 (63)
T smart00051 17 IRVTCD-ENYYGEGCNKF--CRPRDDFFGHYTCDENGNKGCLEGWMGPYC 63 (63)
T ss_pred EEeeCC-CCCcCCccCCE--eCcCccccCCccCCcCCCEecCCCCcCCCC
Confidence 355788 99999999862 22235688999997 889999999999988
No 25
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=97.06 E-value=0.0017 Score=73.77 Aligned_cols=137 Identities=21% Similarity=0.407 Sum_probs=80.8
Q ss_pred CCCCCCCCCCEEeCCCC--ceeeCCCC--cCC--CCCccc----cCCCCCCCCCCCCCCCcccccCC--CcccCC-----
Q 005688 122 SCKSDCSGQGVCNHELG--QCRCFHGF--RGK--GCSERI----HFQCNFPKTPELPYGRWVVSICP--THCDTT----- 184 (683)
Q Consensus 122 ~C~~~C~~~G~C~~~~G--~C~C~~G~--~G~--~Ce~~~----~~~C~~~~~~~~~~g~~~~~~C~--~~C~~~----- 184 (683)
+|...|..+.+|++..| +|+|..|| .|+ +|-... .++|..+. ..|. +.|.++
T Consensus 739 ~~~~~CGp~s~Cin~pg~~rceC~~gy~F~dd~~tCV~i~~pap~n~Ce~g~-----------h~C~i~g~a~c~~hGgs 807 (1289)
T KOG1214|consen 739 TGFHRCGPNSVCINLPGSYRCECRSGYEFADDRHTCVLITPPAPANPCEDGS-----------HTCAIAGQARCVHHGGS 807 (1289)
T ss_pred cCCCCCCCCceeecCCCceeEEEeecceeccCCcceEEecCCCCCCccccCc-----------cccCcCCceEEEecCCc
Confidence 34678999999998888 67777775 443 565421 23444332 2453 444433
Q ss_pred CceEeeCCCcccCCCCCCCCCCCcccCCCCCCCCCCCCCccCCCCCccCCCCCCCccccCCcccccccccccccccccCC
Q 005688 185 RAMCFCGEGTKYPNRPVAEACGFQVNLPSQPGAPKSTDWAKADLDNIFTTNGSKPGWCNVDPEEAYALKVQFKEECDCKY 264 (683)
Q Consensus 185 ~g~C~C~~G~~G~~C~~~~~C~~~~~~~~~~~~~C~~gw~g~~c~~~~~~~C~~~G~C~~~~~~~~~~g~c~~g~C~C~~ 264 (683)
...|.|.+||.|..= .|. +-+++.++-|...+.|.++++ ...|.|.
T Consensus 808 ~y~C~CLPGfsGDG~----~c~--------------------dvDeC~psrChp~A~Cyntpg---------sfsC~C~- 853 (1289)
T KOG1214|consen 808 TYSCACLPGFSGDGH----QCT--------------------DVDECSPSRCHPAATCYNTPG---------SFSCRCQ- 853 (1289)
T ss_pred eEEEeecCCccCCcc----ccc--------------------cccccCccccCCCceEecCCC---------cceeecc-
Confidence 238999999988641 010 011122566788888877664 6799999
Q ss_pred CCCCCCC--cccc--CCCCc------CCCCCCCcee---c---CCeeecCCCccc
Q 005688 265 DGLLGQF--CEVP--VSSTC------VNQCSGHGHC---R---GGFCQCDSGWYG 303 (683)
Q Consensus 265 ~G~~G~~--C~~~--~~~~C------~~~C~~~G~C---~---~g~C~C~~G~~G 303 (683)
+||.|+. |--. ....| +..|.++..| + ..+|.|.++-.|
T Consensus 854 pGy~GDGf~CVP~~~~~T~C~~er~hpl~chg~t~~~~~~Dp~~~e~p~~~~ppG 908 (1289)
T KOG1214|consen 854 PGYYGDGFQCVPDTSSLTPCEQERFHPLQCHGSTGFCWCVDPDGHEVPGTQTPPG 908 (1289)
T ss_pred cCccCCCceecCCCccCCccccccccceeeccccceeEeeCCCcccCCCCCCCCC
Confidence 9999753 4211 01223 2346555433 2 237888777666
No 26
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=96.85 E-value=0.00064 Score=46.44 Aligned_cols=27 Identities=33% Similarity=0.832 Sum_probs=23.0
Q ss_pred CCCCCCCCEEeCCC-C--ceeeCCCCcCCC
Q 005688 124 KSDCSGQGVCNHEL-G--QCRCFHGFRGKG 150 (683)
Q Consensus 124 ~~~C~~~G~C~~~~-G--~C~C~~G~~G~~ 150 (683)
+++|.++|+|.... + .|.|++||+|++
T Consensus 3 ~~~C~n~g~C~~~~~~~y~C~C~~G~~G~~ 32 (32)
T PF00008_consen 3 SNPCQNGGTCIDLPGGGYTCECPPGYTGKR 32 (32)
T ss_dssp TTSSTTTEEEEEESTSEEEEEEBTTEESTT
T ss_pred CCcCCCCeEEEeCCCCCEEeECCCCCccCC
Confidence 56899999998755 4 899999999974
No 27
>KOG1218 consensus Proteins containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=96.29 E-value=0.048 Score=57.91 Aligned_cols=155 Identities=19% Similarity=0.318 Sum_probs=83.1
Q ss_pred eCCCCceeeCCCCcCCCCCccccCCCCCCCCCCCCCCCcccccCC--CcccCCCceEeeCCCcccCCCCCCCCCCCc---
Q 005688 134 NHELGQCRCFHGFRGKGCSERIHFQCNFPKTPELPYGRWVVSICP--THCDTTRAMCFCGEGTKYPNRPVAEACGFQ--- 208 (683)
Q Consensus 134 ~~~~G~C~C~~G~~G~~Ce~~~~~~C~~~~~~~~~~g~~~~~~C~--~~C~~~~g~C~C~~G~~G~~C~~~~~C~~~--- 208 (683)
....+.|.+..+|.|..|+...........+ ... ..|. ..++..++.|. ..+|.|..|.....|+..
T Consensus 45 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c----~~~---~~c~~~~~~~~~~~~~~-~~~~~g~~C~~~~~~~~~c~~ 116 (316)
T KOG1218|consen 45 EVNSGECGLGYGFVGSVCRIECVCGNAGGGC----SQP---CRCKNGGTCVSSTGYCH-LNGYEGPQCESPCPCGDGCAE 116 (316)
T ss_pred cCCceeEecccccCCCccccccccCCCCCcc----cCc---cccCCCCcccCCCCccc-CCCCCcccccCCCCcCCcccc
Confidence 4457899999999999998752211111110 000 0121 22222334444 688888888766554432
Q ss_pred -ccCCCCCCCCCCCCCccCCCCCccCCCCCCCccccCCcccccccccccccccccCCCCCCCCCccccCCCCcC--CCCC
Q 005688 209 -VNLPSQPGAPKSTDWAKADLDNIFTTNGSKPGWCNVDPEEAYALKVQFKEECDCKYDGLLGQFCEVPVSSTCV--NQCS 285 (683)
Q Consensus 209 -~~~~~~~~~~C~~gw~g~~c~~~~~~~C~~~G~C~~~~~~~~~~g~c~~g~C~C~~~G~~G~~C~~~~~~~C~--~~C~ 285 (683)
.+.+....+.+..+|.+..|... ......|.... .+..+..+.++.|.|. +||.|.+|.... ..|. ..|.
T Consensus 117 ~~C~~~~~~c~~~~~~~~~~C~~~----~~~g~~C~~~c-~~~~~~~~~~~~c~c~-~g~~g~~~~~~~-~~c~~~~~~~ 189 (316)
T KOG1218|consen 117 KTCANPRRECRCGGGYIGEQCGEE----NLVGLKCQRDC-QCTGGCDCKNGICTCQ-PGFVGVFCVESC-SGCSPLTACE 189 (316)
T ss_pred cccCCCccceecCCcCcccccccc----CCCCCCccCCC-CCccccCCCCCceecc-CCcccccccccC-CCcCCCcccC
Confidence 11111112334556666666530 00112222221 1111222347899998 999999998752 2254 3566
Q ss_pred CCceec--CCeeecCCCccc
Q 005688 286 GHGHCR--GGFCQCDSGWYG 303 (683)
Q Consensus 286 ~~G~C~--~g~C~C~~G~~G 303 (683)
+++.|. .+.|.|.+++.+
T Consensus 190 ~g~~C~~~~~~~~~~~~~~~ 209 (316)
T KOG1218|consen 190 NGAKCNRSTGSCLCYPGPSG 209 (316)
T ss_pred CCCeeeccccccccCCCCcc
Confidence 777896 678888888765
No 28
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=96.20 E-value=0.0022 Score=34.40 Aligned_cols=13 Identities=38% Similarity=1.216 Sum_probs=11.0
Q ss_pred ceeeCCCCcCCCC
Q 005688 139 QCRCFHGFRGKGC 151 (683)
Q Consensus 139 ~C~C~~G~~G~~C 151 (683)
+|.|++||+|++|
T Consensus 1 ~C~C~~G~~G~~C 13 (13)
T PF12661_consen 1 TCQCPPGWTGPNC 13 (13)
T ss_dssp EEEE-TTEETTTT
T ss_pred CccCcCCCcCCCC
Confidence 5999999999988
No 29
>KOG3512 consensus Netrin, axonal chemotropic factor [Signal transduction mechanisms]
Probab=96.02 E-value=0.026 Score=60.95 Aligned_cols=103 Identities=19% Similarity=0.386 Sum_probs=65.8
Q ss_pred ccccccccccCCCCcccccccCc--ccCCCC-CCCCCCCCE-EeC------C-----CCce-eeCCCCcCCCCCccccCC
Q 005688 95 KAEIGRWLSGCDSVAKEVDLVEM--IGGKSC-KSDCSGQGV-CNH------E-----LGQC-RCFHGFRGKGCSERIHFQ 158 (683)
Q Consensus 95 ~~~~g~~~~~c~~~~~~~~~~~~--~~~~~C-~~~C~~~G~-C~~------~-----~G~C-~C~~G~~G~~Ce~~~~~~ 158 (683)
+.+.|.=|..|...+..-+++.. ...++| .+.|++|+. |.. . -|.| .|.++..|.+|.-
T Consensus 301 HNTaGPdCgrCKpfy~dRPW~raT~~~a~~c~ac~Cn~harrcrfn~Ely~lSgr~SggvClnCrHnTaGrhChy----- 375 (592)
T KOG3512|consen 301 HNTAGPDCGRCKPFYYDRPWGRATALPANECVACNCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHY----- 375 (592)
T ss_pred cCCCCCCcccccccccCCCccccccCCCccccccccchhhhhcccchhhhcccCccccceEeecccCCCCccccc-----
Confidence 34456666666666666665532 345778 677877764 321 1 2467 5999999999986
Q ss_pred CCCCCCCCC-----CCCCcccccCC------CcccCCCceEeeCCCcccCCCCCC
Q 005688 159 CNFPKTPEL-----PYGRWVVSICP------THCDTTRAMCFCGEGTKYPNRPVA 202 (683)
Q Consensus 159 C~~~~~~~~-----~~g~~~~~~C~------~~C~~~~g~C~C~~G~~G~~C~~~ 202 (683)
|..+...+. ....|....|. ..|+..+|+|.|.+|-+|..|+.+
T Consensus 376 CreGyyRd~s~pl~hrkaCk~CdChpVGs~gktCNq~tGqCpCkeGvtG~tCnrC 430 (592)
T KOG3512|consen 376 CREGYYRDGSKPLTHRKACKACDCHPVGSAGKTCNQTTGQCPCKEGVTGLTCNRC 430 (592)
T ss_pred ccCccccCCCCCCchhhhhhhcCCcccccccccccccCCcccCCCCCcccccccc
Confidence 554433221 11234444553 578889999999999999998543
No 30
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=95.97 E-value=0.0034 Score=33.69 Aligned_cols=13 Identities=54% Similarity=1.551 Sum_probs=8.3
Q ss_pred eeecCCCcccCCC
Q 005688 294 FCQCDSGWYGVDC 306 (683)
Q Consensus 294 ~C~C~~G~~G~~C 306 (683)
.|+|++||+|.+|
T Consensus 1 ~C~C~~G~~G~~C 13 (13)
T PF12661_consen 1 TCQCPPGWTGPNC 13 (13)
T ss_dssp EEEE-TTEETTTT
T ss_pred CccCcCCCcCCCC
Confidence 3677777777766
No 31
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=95.76 E-value=0.012 Score=41.48 Aligned_cols=32 Identities=31% Similarity=1.060 Sum_probs=26.7
Q ss_pred CCC-C-CCCCCCCEEeCCCC--ceeeCCCCc-CCCCC
Q 005688 121 KSC-K-SDCSGQGVCNHELG--QCRCFHGFR-GKGCS 152 (683)
Q Consensus 121 ~~C-~-~~C~~~G~C~~~~G--~C~C~~G~~-G~~Ce 152 (683)
++| . .+|.++|+|....| .|.|++||. |..|+
T Consensus 3 ~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~~g~~C~ 39 (39)
T smart00179 3 DECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNCE 39 (39)
T ss_pred ccCcCCCCcCCCCEeECCCCCeEeECCCCCccCCcCC
Confidence 567 3 57999999987676 799999999 98885
No 32
>smart00051 DSL delta serrate ligand.
Probab=95.72 E-value=0.01 Score=47.37 Aligned_cols=30 Identities=33% Similarity=0.783 Sum_probs=25.4
Q ss_pred CCC--CCCCCCCCEEeCCCCceeeCCCCcCCCC
Q 005688 121 KSC--KSDCSGQGVCNHELGQCRCFHGFRGKGC 151 (683)
Q Consensus 121 ~~C--~~~C~~~G~C~~~~G~C~C~~G~~G~~C 151 (683)
+.| .+++.+|.+|+. .|.|+|.+||+|++|
T Consensus 32 ~~C~~~~d~~~~~~Cd~-~G~~~C~~Gw~G~~C 63 (63)
T smart00051 32 KFCRPRDDFFGHYTCDE-NGNKGCLEGWMGPYC 63 (63)
T ss_pred CEeCcCccccCCccCCc-CCCEecCCCCcCCCC
Confidence 445 356889999986 799999999999988
No 33
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=95.61 E-value=0.0072 Score=45.58 Aligned_cols=27 Identities=37% Similarity=0.973 Sum_probs=21.6
Q ss_pred CCCCC----EEeCCCCceeeCCCCcCCCCCc
Q 005688 127 CSGQG----VCNHELGQCRCFHGFRGKGCSE 153 (683)
Q Consensus 127 C~~~G----~C~~~~G~C~C~~G~~G~~Ce~ 153 (683)
|.++| +|+..+|+|.|.++|+|+.|++
T Consensus 3 C~~~~~~~~~C~~~~G~C~C~~~~~G~~C~~ 33 (49)
T PF00053_consen 3 CNPHGSSSQTCDPSTGQCVCKPGTTGPRCDQ 33 (49)
T ss_dssp STTCCBCCSSEEETCEEESBSTTEESTTS-E
T ss_pred CcCCCCCCCcccCCCCEEeccccccCCcCcC
Confidence 44554 8988899999999999999985
No 34
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=95.20 E-value=0.0091 Score=40.74 Aligned_cols=24 Identities=38% Similarity=0.942 Sum_probs=20.1
Q ss_pred CCCCCCceec-----CCeeecCCCcccCC
Q 005688 282 NQCSGHGHCR-----GGFCQCDSGWYGVD 305 (683)
Q Consensus 282 ~~C~~~G~C~-----~g~C~C~~G~~G~~ 305 (683)
++|.++|+|+ +..|+|++||+|..
T Consensus 4 ~~C~n~g~C~~~~~~~y~C~C~~G~~G~~ 32 (32)
T PF00008_consen 4 NPCQNGGTCIDLPGGGYTCECPPGYTGKR 32 (32)
T ss_dssp TSSTTTEEEEEESTSEEEEEEBTTEESTT
T ss_pred CcCCCCeEEEeCCCCCEEeECCCCCccCC
Confidence 5899999997 23899999999974
No 35
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=95.11 E-value=0.027 Score=39.16 Aligned_cols=32 Identities=31% Similarity=1.049 Sum_probs=26.1
Q ss_pred CCCC--CCCCCCCEEeCCCC--ceeeCCCCcCCCCC
Q 005688 121 KSCK--SDCSGQGVCNHELG--QCRCFHGFRGKGCS 152 (683)
Q Consensus 121 ~~C~--~~C~~~G~C~~~~G--~C~C~~G~~G~~Ce 152 (683)
++|. .+|.++|.|....+ .|.|+.||.|..|+
T Consensus 3 ~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~ 38 (38)
T cd00054 3 DECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNCE 38 (38)
T ss_pred ccCCCCCCcCCCCEeECCCCCeEeECCCCCcCCcCC
Confidence 5663 57999999987666 79999999998885
No 36
>KOG4260 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.00 E-value=0.018 Score=57.94 Aligned_cols=41 Identities=39% Similarity=1.047 Sum_probs=35.1
Q ss_pred cCCCCCCCCCccccCCCCcC----CCCCCCceec-------CCeeecCCCcccCCCCC
Q 005688 262 CKYDGLLGQFCEVPVSSTCV----NQCSGHGHCR-------GGFCQCDSGWYGVDCSI 308 (683)
Q Consensus 262 C~~~G~~G~~C~~~~~~~C~----~~C~~~G~C~-------~g~C~C~~G~~G~~C~~ 308 (683)
|+ +|-.|++|. .|+ .+|.++|.|. +|.|.|++||+|+.|..
T Consensus 132 Cp-~gtyGpdCl-----~Cpggser~C~GnG~C~GdGsR~GsGkCkC~~GY~Gp~C~~ 183 (350)
T KOG4260|consen 132 CP-DGTYGPDCL-----QCPGGSERPCFGNGSCHGDGSREGSGKCKCETGYTGPLCRY 183 (350)
T ss_pred cC-CCCcCCccc-----cCCCCCcCCcCCCCcccCCCCCCCCCcccccCCCCCccccc
Confidence 77 899999998 455 4799999996 57999999999999865
No 37
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=94.94 E-value=0.025 Score=42.88 Aligned_cols=28 Identities=39% Similarity=1.047 Sum_probs=23.5
Q ss_pred CCCCCCE----EeCCCCceeeCCCCcCCCCCc
Q 005688 126 DCSGQGV----CNHELGQCRCFHGFRGKGCSE 153 (683)
Q Consensus 126 ~C~~~G~----C~~~~G~C~C~~G~~G~~Ce~ 153 (683)
.|+++|. |+..+|+|.|.+||+|..|+.
T Consensus 3 ~C~~~g~~~~~C~~~~G~C~C~~~~~G~~C~~ 34 (50)
T cd00055 3 DCNGHGSLSGQCDPGTGQCECKPNTTGRRCDR 34 (50)
T ss_pred cCcCCCCCCccccCCCCEEeCCCcCCCCCCCC
Confidence 3555555 998899999999999999985
No 38
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=94.71 E-value=0.058 Score=58.46 Aligned_cols=115 Identities=16% Similarity=0.137 Sum_probs=50.4
Q ss_pred ccCCCCceeecCccCCChhhhhc--cccCCCCCCCceeEEeccCCCCCCCCCCCCCCccHHHHHHHHHHhcCCCCCcccc
Q 005688 536 CFDPEKDLVLPAWKAPDAFVLRS--KLWASPREKRKTLFYFNGNLGSAYPNGRPESSYSMGVRQKLAEEYGSSPNKEGKL 613 (683)
Q Consensus 536 ~f~p~kDvviP~~~~~~~~~~~~--~~~~~~~~~R~~L~~F~G~~~~~~~~~~~~~~ys~~iR~~L~~~~~~~~~~~~~~ 613 (683)
.||...||.+|+........... .+......+++..++++.+.. ....|..+++++...- .....
T Consensus 141 TYr~dSDi~~py~~~~~~~~~~~~~~~~~~~~~K~~~~~w~~Snc~------------~~~~R~~~~~~L~~~~-~vd~y 207 (349)
T PF00852_consen 141 TYRRDSDIPLPYGYFSPRESPSEKDDLPNILKKKTKLAAWIVSNCN------------PHSGREEYVRELSKYI-PVDSY 207 (349)
T ss_dssp --------------------------------TSSEEEEE--S-S--------------H-HHHHHHHHHHTTS--EEE-
T ss_pred ccccccccccccccccccccccccccccccccCCCceEEEEeeCcC------------CcccHHHHHHHHHhhc-CeEcc
Confidence 57888999999754322111110 111112334455667776642 2334999999887752 23445
Q ss_pred CcccCcceEEecCCchhHHHHhhcCceecccCCC---C-CchhHHHHHhcCceeEEee
Q 005688 614 GKQHAEDVIVTSLRSENYHEDLSSSVFCGVLPGD---G-WSGRMEDSILQGCIPVVIQ 667 (683)
Q Consensus 614 g~~~~~~~~~~~~~~~~y~~~m~~S~FCL~p~Gd---~-~s~Rl~dAi~~GCIPViis 667 (683)
|++... .......+.+.|++-||-|+.--. . .|-++++|+.+|+|||+++
T Consensus 208 G~c~~~----~~~~~~~~~~~~~~ykF~lafENs~c~dYiTEK~~~al~~g~VPI~~G 261 (349)
T PF00852_consen 208 GKCGNN----NPCPRDCKLELLSKYKFYLAFENSNCPDYITEKFWNALLAGTVPIYWG 261 (349)
T ss_dssp SSTT------SSS--S-HHHHHHTEEEEEEE-SS--TT---HHHHHHHHTTSEEEEES
T ss_pred CCCCCC----CCcccccccccccCcEEEEEecCCCCCCCCCHHHHHHHHCCeEEEEEC
Confidence 555110 012234588999999999987652 2 2888999999999999999
No 39
>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates. In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.
Probab=94.58 E-value=0.012 Score=46.95 Aligned_cols=45 Identities=29% Similarity=0.705 Sum_probs=25.6
Q ss_pred ccccccCCCCCCCCCccccCCCCcCC--CCCCCceec-CCeeecCCCcccCCC
Q 005688 257 KEECDCKYDGLLGQFCEVPVSSTCVN--QCSGHGHCR-GGFCQCDSGWYGVDC 306 (683)
Q Consensus 257 ~g~C~C~~~G~~G~~C~~~~~~~C~~--~C~~~G~C~-~g~C~C~~G~~G~~C 306 (683)
..+-.|. +.|.|..|+. .|.+ .-.+|-+|. +|.-.|.+||+|++|
T Consensus 16 ~~rv~C~-~nyyG~~C~~----~C~~~~d~~ghy~Cd~~G~~~C~~Gw~G~~C 63 (63)
T PF01414_consen 16 RIRVVCD-ENYYGPNCSK----FCKPRDDSFGHYTCDSNGNKVCLPGWTGPNC 63 (63)
T ss_dssp --------TTEETTTT-E----E---EEETTEEEEE-SS--EEE-TTEESTTS
T ss_pred EEEEECC-CCCCCccccC----CcCCCcCCcCCcccCCCCCCCCCCCCcCCCC
Confidence 4578898 9999999987 5653 245677786 889999999999998
No 40
>KOG1218 consensus Proteins containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=94.55 E-value=0.42 Score=50.69 Aligned_cols=151 Identities=25% Similarity=0.517 Sum_probs=81.6
Q ss_pred CCEEeCCCCceeeCCCCcCC-CCCccccCCCCCCCCCCCCCCCcccccCCCcc--cCCCceEeeCCCcccCCCCCCCCCC
Q 005688 130 QGVCNHELGQCRCFHGFRGK-GCSERIHFQCNFPKTPELPYGRWVVSICPTHC--DTTRAMCFCGEGTKYPNRPVAEACG 206 (683)
Q Consensus 130 ~G~C~~~~G~C~C~~G~~G~-~Ce~~~~~~C~~~~~~~~~~g~~~~~~C~~~C--~~~~g~C~C~~G~~G~~C~~~~~C~ 206 (683)
...+....+.|.|.+||+|. .|.. . ..+ ..|...| ....+.|.+..++.|..|.....+.
T Consensus 7 ~~~~~~~~~~c~c~~~~~g~~~~~~-~-~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~ 69 (316)
T KOG1218|consen 7 DLKCLGGSGQCFCDPGYTGRLQCEH-Q-AVT---------------SACSGICPCEVNSGECGLGYGFVGSVCRIECVCG 69 (316)
T ss_pred CcccCCCCCceecCCCccccccccC-C-CCC---------------ccccccCCccCCceeEecccccCCCccccccccC
Confidence 34556567899999999996 2221 0 000 1122222 3356788888888888764432211
Q ss_pred Cc----------cc--CCCCCCCCC-CCCCccCCCCCccCCCCCCCccccCCcccccccccccc-c-ccccCCCCCCCCC
Q 005688 207 FQ----------VN--LPSQPGAPK-STDWAKADLDNIFTTNGSKPGWCNVDPEEAYALKVQFK-E-ECDCKYDGLLGQF 271 (683)
Q Consensus 207 ~~----------~~--~~~~~~~~C-~~gw~g~~c~~~~~~~C~~~G~C~~~~~~~~~~g~c~~-g-~C~C~~~G~~G~~ 271 (683)
.. .. ......+.| ..+|.|..|+... +|... |.. .+|.+ . .|.|. .+|.+..
T Consensus 70 ~~~~~c~~~~~c~~~~~~~~~~~~~~~~~~~g~~C~~~~--~~~~~--c~~--------~~C~~~~~~c~~~-~~~~~~~ 136 (316)
T KOG1218|consen 70 NAGGGCSQPCRCKNGGTCVSSTGYCHLNGYEGPQCESPC--PCGDG--CAE--------KTCANPRRECRCG-GGYIGEQ 136 (316)
T ss_pred CCCCcccCccccCCCCcccCCCCcccCCCCCcccccCCC--CcCCc--ccc--------cccCCCccceecC-CcCcccc
Confidence 10 00 000111223 4566666666422 11111 111 11222 2 47776 7777777
Q ss_pred cccc--CCCCcCCCC--CCCceecCCeeecCCCcccCCCCCCc
Q 005688 272 CEVP--VSSTCVNQC--SGHGHCRGGFCQCDSGWYGVDCSIPS 310 (683)
Q Consensus 272 C~~~--~~~~C~~~C--~~~G~C~~g~C~C~~G~~G~~C~~~~ 310 (683)
|... ....|...| ..+..+..+.|.|.+||.|..|....
T Consensus 137 C~~~~~~g~~C~~~c~~~~~~~~~~~~c~c~~g~~g~~~~~~~ 179 (316)
T KOG1218|consen 137 CGEENLVGLKCQRDCQCTGGCDCKNGICTCQPGFVGVFCVESC 179 (316)
T ss_pred ccccCCCCCCccCCCCCccccCCCCCceeccCCcccccccccC
Confidence 7661 134555555 33444568999999999999998765
No 41
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=94.43 E-value=0.041 Score=40.95 Aligned_cols=23 Identities=35% Similarity=1.012 Sum_probs=20.8
Q ss_pred CEEeCCCCceeeCCCCcCCCCCc
Q 005688 131 GVCNHELGQCRCFHGFRGKGCSE 153 (683)
Q Consensus 131 G~C~~~~G~C~C~~G~~G~~Ce~ 153 (683)
..|+..+|+|.|.+|++|..|+.
T Consensus 11 ~~C~~~~G~C~C~~~~~G~~C~~ 33 (46)
T smart00180 11 GTCDPDTGQCECKPNVTGRRCDR 33 (46)
T ss_pred CcccCCCCEEECCCCCCCCCCCc
Confidence 57888899999999999999985
No 42
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=93.92 E-value=0.068 Score=36.46 Aligned_cols=29 Identities=34% Similarity=0.953 Sum_probs=23.5
Q ss_pred CCCCCCCCEEeCCCC--ceeeCCCCcCC-CCC
Q 005688 124 KSDCSGQGVCNHELG--QCRCFHGFRGK-GCS 152 (683)
Q Consensus 124 ~~~C~~~G~C~~~~G--~C~C~~G~~G~-~Ce 152 (683)
...|.+++.|....+ +|.|+.||.|. .|+
T Consensus 5 ~~~C~~~~~C~~~~~~~~C~C~~g~~g~~~C~ 36 (36)
T cd00053 5 SNPCSNGGTCVNTPGSYRCVCPPGYTGDRSCE 36 (36)
T ss_pred CCCCCCCCEEecCCCCeEeECCCCCcccCCcC
Confidence 357888999986544 89999999998 664
No 43
>smart00181 EGF Epidermal growth factor-like domain.
Probab=93.70 E-value=0.084 Score=36.32 Aligned_cols=27 Identities=37% Similarity=0.947 Sum_probs=21.9
Q ss_pred CCCCCCCEEeCCCC--ceeeCCCCcC-CCCC
Q 005688 125 SDCSGQGVCNHELG--QCRCFHGFRG-KGCS 152 (683)
Q Consensus 125 ~~C~~~G~C~~~~G--~C~C~~G~~G-~~Ce 152 (683)
.+|.++ +|....+ +|.|++||.| ..|+
T Consensus 6 ~~C~~~-~C~~~~~~~~C~C~~g~~g~~~C~ 35 (35)
T smart00181 6 GPCSNG-TCINTPGSYTCSCPPGYTGDKRCE 35 (35)
T ss_pred CCCCCC-EEECCCCCeEeECCCCCccCCccC
Confidence 468888 9986544 8999999999 7774
No 44
>PHA02887 EGF-like protein; Provisional
Probab=92.99 E-value=0.11 Score=45.87 Aligned_cols=33 Identities=33% Similarity=0.827 Sum_probs=25.4
Q ss_pred CCCC----CCCCCCCEEeCCCC----ceeeCCCCcCCCCCcc
Q 005688 121 KSCK----SDCSGQGVCNHELG----QCRCFHGFRGKGCSER 154 (683)
Q Consensus 121 ~~C~----~~C~~~G~C~~~~G----~C~C~~G~~G~~Ce~~ 154 (683)
..|+ +-|- ||+|..... .|.|+.||+|..|+..
T Consensus 84 ~pC~~eyk~YCi-HG~C~yI~dL~epsCrC~~GYtG~RCE~v 124 (126)
T PHA02887 84 EKCKNDFNDFCI-NGECMNIIDLDEKFCICNKGYTGIRCDEV 124 (126)
T ss_pred cccChHhhCEee-CCEEEccccCCCceeECCCCcccCCCCcc
Confidence 5663 3487 789965433 7999999999999974
No 45
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=90.80 E-value=0.24 Score=34.64 Aligned_cols=26 Identities=35% Similarity=0.961 Sum_probs=21.0
Q ss_pred CCCCCCceec----CCeeecCCCcc-cCCCC
Q 005688 282 NQCSGHGHCR----GGFCQCDSGWY-GVDCS 307 (683)
Q Consensus 282 ~~C~~~G~C~----~g~C~C~~G~~-G~~C~ 307 (683)
.+|.++|+|+ ...|.|.+||. |..|+
T Consensus 9 ~~C~~~~~C~~~~g~~~C~C~~g~~~g~~C~ 39 (39)
T smart00179 9 NPCQNGGTCVNTVGSYRCECPPGYTDGRNCE 39 (39)
T ss_pred CCcCCCCEeECCCCCeEeECCCCCccCCcCC
Confidence 4688888996 23799999999 98885
No 46
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=90.48 E-value=0.18 Score=36.58 Aligned_cols=27 Identities=30% Similarity=0.943 Sum_probs=23.1
Q ss_pred CCC---CCCCCCCCEEeCCCC--ceeeCCCCc
Q 005688 121 KSC---KSDCSGQGVCNHELG--QCRCFHGFR 147 (683)
Q Consensus 121 ~~C---~~~C~~~G~C~~~~G--~C~C~~G~~ 147 (683)
++| +..|..++.|.+..| .|.|++||.
T Consensus 3 dEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~ 34 (42)
T PF07645_consen 3 DECAEGPHNCPENGTCVNTEGSYSCSCPPGYE 34 (42)
T ss_dssp STTTTTSSSSSTTSEEEEETTEEEEEESTTEE
T ss_pred cccCCCCCcCCCCCEEEcCCCCEEeeCCCCcE
Confidence 677 346988999998888 899999998
No 47
>PF04863 EGF_alliinase: Alliinase EGF-like domain; InterPro: IPR006947 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A.
Probab=90.41 E-value=0.16 Score=38.58 Aligned_cols=30 Identities=33% Similarity=0.679 Sum_probs=17.6
Q ss_pred CCCCCCCEEeC----CCC--ceeeCCCCcCCCCCcc
Q 005688 125 SDCSGQGVCNH----ELG--QCRCFHGFRGKGCSER 154 (683)
Q Consensus 125 ~~C~~~G~C~~----~~G--~C~C~~G~~G~~Ce~~ 154 (683)
-.|++||..-. ..| .|.|+.-|.|++|++.
T Consensus 17 i~CSGHGr~flDg~~~dG~p~CECn~Cy~GpdCS~~ 52 (56)
T PF04863_consen 17 ISCSGHGRAFLDGLIADGSPVCECNSCYGGPDCSTL 52 (56)
T ss_dssp S--TTSEE--TTS-EETTEE--EE-TTEESTTS-EE
T ss_pred CCcCCCCeeeeccccccCCccccccCCcCCCCcccC
Confidence 36999998842 134 7999999999999985
No 48
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=90.03 E-value=0.31 Score=33.62 Aligned_cols=26 Identities=35% Similarity=0.942 Sum_probs=20.7
Q ss_pred CCCCCCceec----CCeeecCCCcccCCCC
Q 005688 282 NQCSGHGHCR----GGFCQCDSGWYGVDCS 307 (683)
Q Consensus 282 ~~C~~~G~C~----~g~C~C~~G~~G~~C~ 307 (683)
.+|.+++.|. ...|.|.+||.|..|+
T Consensus 9 ~~C~~~~~C~~~~~~~~C~C~~g~~g~~C~ 38 (38)
T cd00054 9 NPCQNGGTCVNTVGSYRCSCPPGYTGRNCE 38 (38)
T ss_pred CCcCCCCEeECCCCCeEeECCCCCcCCcCC
Confidence 3688888886 2379999999998875
No 49
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=88.61 E-value=0.36 Score=36.49 Aligned_cols=20 Identities=30% Similarity=0.830 Sum_probs=17.1
Q ss_pred eec--CCeeecCCCcccCCCCC
Q 005688 289 HCR--GGFCQCDSGWYGVDCSI 308 (683)
Q Consensus 289 ~C~--~g~C~C~~G~~G~~C~~ 308 (683)
.|+ +|+|.|+++|+|..|+.
T Consensus 13 ~C~~~~G~C~C~~~~~G~~C~~ 34 (50)
T cd00055 13 QCDPGTGQCECKPNTTGRRCDR 34 (50)
T ss_pred cccCCCCEEeCCCcCCCCCCCC
Confidence 364 78999999999999984
No 50
>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates. In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.
Probab=88.09 E-value=0.24 Score=39.53 Aligned_cols=46 Identities=26% Similarity=0.538 Sum_probs=21.8
Q ss_pred ceeeCCCCcCCCCCccccCCCCCCCCCCCCCCCcccccCCCcccCCCceEeeCCCcccCCC
Q 005688 139 QCRCFHGFRGKGCSERIHFQCNFPKTPELPYGRWVVSICPTHCDTTRAMCFCGEGTKYPNR 199 (683)
Q Consensus 139 ~C~C~~G~~G~~Ce~~~~~~C~~~~~~~~~~g~~~~~~C~~~C~~~~g~C~C~~G~~G~~C 199 (683)
.-.|..+|.|+.|+.. |..... ..+ .-.|+ ..|.=.|.+||+|++|
T Consensus 18 rv~C~~nyyG~~C~~~----C~~~~d---~~g-------hy~Cd-~~G~~~C~~Gw~G~~C 63 (63)
T PF01414_consen 18 RVVCDENYYGPNCSKF----CKPRDD---SFG-------HYTCD-SNGNKVCLPGWTGPNC 63 (63)
T ss_dssp -----TTEETTTT-EE-------EEE---TTE-------EEEE--SS--EEE-TTEESTTS
T ss_pred EEECCCCCCCccccCC----cCCCcC---CcC-------CcccC-CCCCCCCCCCCcCCCC
Confidence 5689999999999985 432100 000 02356 4688889999999876
No 51
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=88.09 E-value=0.46 Score=32.13 Aligned_cols=26 Identities=38% Similarity=0.912 Sum_probs=20.3
Q ss_pred CCCCCCceec----CCeeecCCCcccC-CCC
Q 005688 282 NQCSGHGHCR----GGFCQCDSGWYGV-DCS 307 (683)
Q Consensus 282 ~~C~~~G~C~----~g~C~C~~G~~G~-~C~ 307 (683)
.+|.+++.|+ ...|.|+.||.|. .|+
T Consensus 6 ~~C~~~~~C~~~~~~~~C~C~~g~~g~~~C~ 36 (36)
T cd00053 6 NPCSNGGTCVNTPGSYRCVCPPGYTGDRSCE 36 (36)
T ss_pred CCCCCCCEEecCCCCeEeECCCCCcccCCcC
Confidence 4677788886 3489999999998 663
No 52
>KOG3607 consensus Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family [Posttranslational modification, protein turnover, chaperones]
Probab=86.64 E-value=0.44 Score=56.02 Aligned_cols=33 Identities=33% Similarity=0.772 Sum_probs=29.1
Q ss_pred CCCCCCCCCCCEEeCCCCceeeCCCCcCCCCCcc
Q 005688 121 KSCKSDCSGQGVCNHELGQCRCFHGFRGKGCSER 154 (683)
Q Consensus 121 ~~C~~~C~~~G~C~~~~G~C~C~~G~~G~~Ce~~ 154 (683)
..|+..|++||+|++ ...|+|.+||.+++|+..
T Consensus 626 ~~~~~~C~g~GVCnn-~~~ChC~~gwapp~C~~~ 658 (716)
T KOG3607|consen 626 SCCPTTCNGHGVCNN-ELNCHCEPGWAPPFCFIF 658 (716)
T ss_pred cccccccCCCcccCC-CcceeeCCCCCCCccccc
Confidence 445778999999995 779999999999999985
No 53
>KOG3607 consensus Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family [Posttranslational modification, protein turnover, chaperones]
Probab=86.56 E-value=0.6 Score=54.95 Aligned_cols=34 Identities=35% Similarity=0.838 Sum_probs=29.9
Q ss_pred CcCCCCCCCceec-CCeeecCCCcccCCCCCCccC
Q 005688 279 TCVNQCSGHGHCR-GGFCQCDSGWYGVDCSIPSVM 312 (683)
Q Consensus 279 ~C~~~C~~~G~C~-~g~C~C~~G~~G~~C~~~~~~ 312 (683)
.|+..|+++|.|+ ...|+|.+||.+++|++....
T Consensus 627 ~~~~~C~g~GVCnn~~~ChC~~gwapp~C~~~~~~ 661 (716)
T KOG3607|consen 627 CCPTTCNGHGVCNNELNCHCEPGWAPPFCFIFGYG 661 (716)
T ss_pred ccccccCCCcccCCCcceeeCCCCCCCccccccCC
Confidence 5667799999998 679999999999999997755
No 54
>KOG2619 consensus Fucosyltransferase [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=86.56 E-value=1.1 Score=48.40 Aligned_cols=100 Identities=16% Similarity=0.126 Sum_probs=64.0
Q ss_pred CCCCceeEEeccCCCCCCCCCCCCCCccHHHHHHHHHHhcCCCCCccccCcccCcceEEecCCchhHHHHhhcCceeccc
Q 005688 565 REKRKTLFYFNGNLGSAYPNGRPESSYSMGVRQKLAEEYGSSPNKEGKLGKQHAEDVIVTSLRSENYHEDLSSSVFCGVL 644 (683)
Q Consensus 565 ~~~R~~L~~F~G~~~~~~~~~~~~~~ys~~iR~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~y~~~m~~S~FCL~p 644 (683)
..+++.++++.-+..+ ..-|..+++++... -.....|.+..+.. ........++.++.=||=|+.
T Consensus 193 ~~k~~~~aw~vSnc~~------------~~~R~~~~~~L~k~-l~iD~YG~c~~~~~--~~~~~~~~~~~~s~YKFyLAf 257 (372)
T KOG2619|consen 193 SAKTKLAAWLVSNCIP------------RSARLDYYKELMKH-LEIDSYGECLRKNA--NRDPSDCLLETLSHYKFYLAF 257 (372)
T ss_pred ccccceeeeeccccCc------------chHHHHHHHHHHhh-Cceeeccccccccc--cCCCCCcceeecccceEEEEe
Confidence 4567788888776643 33576777766554 22334444443211 122334566888899999986
Q ss_pred CCC----CCchhHHHHHhcCceeEEeeCCeeecccccCcc
Q 005688 645 PGD----GWSGRMEDSILQGCIPVVIQCKFIFSTTLCPEL 680 (683)
Q Consensus 645 ~Gd----~~s~Rl~dAi~~GCIPViisD~~~l~~~~~~~~ 680 (683)
--. =-|-+|+-|+.+|-|||+++. ..+|..+-|..
T Consensus 258 ENS~c~DYVTEKfw~al~~gsVPVvlg~-~n~e~fvP~~S 296 (372)
T KOG2619|consen 258 ENSNCEDYVTEKFWNALDAGSVPVVLGP-PNYENFVPPDS 296 (372)
T ss_pred cccCCcccccHHHHhhhhcCcccEEECC-ccccccCCCcc
Confidence 652 228899999999999999998 44566555543
No 55
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=86.35 E-value=0.38 Score=36.10 Aligned_cols=21 Identities=33% Similarity=0.809 Sum_probs=16.5
Q ss_pred ceec--CCeeecCCCcccCCCCC
Q 005688 288 GHCR--GGFCQCDSGWYGVDCSI 308 (683)
Q Consensus 288 G~C~--~g~C~C~~G~~G~~C~~ 308 (683)
..|. +|+|.|+++|+|..|++
T Consensus 11 ~~C~~~~G~C~C~~~~~G~~C~~ 33 (49)
T PF00053_consen 11 QTCDPSTGQCVCKPGTTGPRCDQ 33 (49)
T ss_dssp SSEEETCEEESBSTTEESTTS-E
T ss_pred CcccCCCCEEeccccccCCcCcC
Confidence 3564 78999999999999986
No 56
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=85.19 E-value=0.5 Score=33.18 Aligned_cols=25 Identities=28% Similarity=0.857 Sum_probs=18.6
Q ss_pred CCCCCCCEEeCCCC--ceeeCCCCcCC
Q 005688 125 SDCSGQGVCNHELG--QCRCFHGFRGK 149 (683)
Q Consensus 125 ~~C~~~G~C~~~~G--~C~C~~G~~G~ 149 (683)
..|+.+.+|....+ .|.|++||.|+
T Consensus 6 ~~C~~nA~C~~~~~~~~C~C~~Gy~Gd 32 (36)
T PF12947_consen 6 GGCHPNATCTNTGGSYTCTCKPGYEGD 32 (36)
T ss_dssp GGS-TTCEEEE-TTSEEEEE-CEEECC
T ss_pred CCCCCCcEeecCCCCEEeECCCCCccC
Confidence 35889999987666 89999999986
No 57
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=83.01 E-value=0.68 Score=40.50 Aligned_cols=38 Identities=42% Similarity=0.979 Sum_probs=27.6
Q ss_pred CCCCCCceecCC---------eeecCC-------------CcccCCCCCCccCCCCCCCCCCCCc
Q 005688 282 NQCSGHGHCRGG---------FCQCDS-------------GWYGVDCSIPSVMSSMSEWPQWLRP 324 (683)
Q Consensus 282 ~~C~~~G~C~~g---------~C~C~~-------------G~~G~~C~~~~~~~~~~~~p~~l~~ 324 (683)
+.|++||.|... .|+|.+ .|.|..|+...... |.||-.
T Consensus 13 n~CsgHG~C~~~~~~~~~~C~~C~C~~T~~~~~~~~~ktt~W~G~aCqKkDvS~-----~F~L~~ 72 (103)
T PF12955_consen 13 NNCSGHGSCVKKYGSGGGDCFACKCKPTVVKTGSGKGKTTHWGGPACQKKDVSV-----PFWLFA 72 (103)
T ss_pred cCCCCCceEeeccCCCccceEEEEeeccccccccccCceeeecccccccccccc-----hhhHHH
Confidence 679999999621 689987 68889998766554 456544
No 58
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=82.61 E-value=0.98 Score=39.53 Aligned_cols=31 Identities=32% Similarity=0.993 Sum_probs=23.7
Q ss_pred CCCCCCCCEEeCCC----C---ceeeCC-------------CCcCCCCCcc
Q 005688 124 KSDCSGQGVCNHEL----G---QCRCFH-------------GFRGKGCSER 154 (683)
Q Consensus 124 ~~~C~~~G~C~~~~----G---~C~C~~-------------G~~G~~Ce~~ 154 (683)
.++|++||.|.... + .|.|.+ .|.|..|+..
T Consensus 12 Tn~CsgHG~C~~~~~~~~~~C~~C~C~~T~~~~~~~~~ktt~W~G~aCqKk 62 (103)
T PF12955_consen 12 TNNCSGHGSCVKKYGSGGGDCFACKCKPTVVKTGSGKGKTTHWGGPACQKK 62 (103)
T ss_pred ccCCCCCceEeeccCCCccceEEEEeeccccccccccCceeeecccccccc
Confidence 47899999998642 1 689998 5777788764
No 59
>PHA02887 EGF-like protein; Provisional
Probab=82.46 E-value=0.86 Score=40.32 Aligned_cols=25 Identities=36% Similarity=1.091 Sum_probs=20.4
Q ss_pred CCCCceec------CCeeecCCCcccCCCCCC
Q 005688 284 CSGHGHCR------GGFCQCDSGWYGVDCSIP 309 (683)
Q Consensus 284 C~~~G~C~------~g~C~C~~G~~G~~C~~~ 309 (683)
|- ||+|. ...|.|+.||+|..|+.-
T Consensus 94 Ci-HG~C~yI~dL~epsCrC~~GYtG~RCE~v 124 (126)
T PHA02887 94 CI-NGECMNIIDLDEKFCICNKGYTGIRCDEV 124 (126)
T ss_pred ee-CCEEEccccCCCceeECCCCcccCCCCcc
Confidence 55 67895 458999999999999863
No 60
>PF04863 EGF_alliinase: Alliinase EGF-like domain; InterPro: IPR006947 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A.
Probab=81.77 E-value=0.71 Score=35.16 Aligned_cols=29 Identities=45% Similarity=0.927 Sum_probs=17.0
Q ss_pred CCCCCCceec------CC--eeecCCCcccCCCCCCc
Q 005688 282 NQCSGHGHCR------GG--FCQCDSGWYGVDCSIPS 310 (683)
Q Consensus 282 ~~C~~~G~C~------~g--~C~C~~G~~G~~C~~~~ 310 (683)
-.|++||..- +| .|.|..-|.|++|++..
T Consensus 17 i~CSGHGr~flDg~~~dG~p~CECn~Cy~GpdCS~~~ 53 (56)
T PF04863_consen 17 ISCSGHGRAFLDGLIADGSPVCECNSCYGGPDCSTLI 53 (56)
T ss_dssp S--TTSEE--TTS-EETTEE--EE-TTEESTTS-EE-
T ss_pred CCcCCCCeeeeccccccCCccccccCCcCCCCcccCC
Confidence 3699999974 33 79999999999999754
No 61
>smart00181 EGF Epidermal growth factor-like domain.
Probab=81.67 E-value=1.3 Score=30.26 Aligned_cols=25 Identities=32% Similarity=0.852 Sum_probs=18.3
Q ss_pred CCCCCCceec----CCeeecCCCccc-CCCC
Q 005688 282 NQCSGHGHCR----GGFCQCDSGWYG-VDCS 307 (683)
Q Consensus 282 ~~C~~~G~C~----~g~C~C~~G~~G-~~C~ 307 (683)
.+|.++ +|. ...|.|.+||.| ..|+
T Consensus 6 ~~C~~~-~C~~~~~~~~C~C~~g~~g~~~C~ 35 (35)
T smart00181 6 GPCSNG-TCINTPGSYTCSCPPGYTGDKRCE 35 (35)
T ss_pred CCCCCC-EEECCCCCeEeECCCCCccCCccC
Confidence 356666 775 348999999999 7664
No 62
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=78.51 E-value=2.4 Score=31.44 Aligned_cols=17 Identities=29% Similarity=0.751 Sum_probs=13.3
Q ss_pred CCeeecCCCcccCCCCC
Q 005688 292 GGFCQCDSGWYGVDCSI 308 (683)
Q Consensus 292 ~g~C~C~~G~~G~~C~~ 308 (683)
+|+|.|+++++|..|+.
T Consensus 17 ~G~C~C~~~~~G~~C~~ 33 (46)
T smart00180 17 TGQCECKPNVTGRRCDR 33 (46)
T ss_pred CCEEECCCCCCCCCCCc
Confidence 57888888888888874
No 63
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=78.34 E-value=1.6 Score=29.97 Aligned_cols=22 Identities=41% Similarity=1.043 Sum_probs=18.2
Q ss_pred ccCCCcccCC-CceEeeCCCccc
Q 005688 175 SICPTHCDTT-RAMCFCGEGTKY 196 (683)
Q Consensus 175 ~~C~~~C~~~-~g~C~C~~G~~G 196 (683)
..|+..|+.. .++|.|++||.-
T Consensus 6 t~CpA~CDpn~~~~C~CPeGyIl 28 (34)
T PF09064_consen 6 TECPADCDPNSPGQCFCPEGYIL 28 (34)
T ss_pred ccCCCccCCCCCCceeCCCceEe
Confidence 4788999985 679999999973
No 64
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=77.53 E-value=3.3 Score=31.35 Aligned_cols=38 Identities=34% Similarity=0.761 Sum_probs=26.1
Q ss_pred ccccccCCCCCCCCCccccCCCCcCCCCCCCceecCCeeecCCCcc
Q 005688 257 KEECDCKYDGLLGQFCEVPVSSTCVNQCSGHGHCRGGFCQCDSGWY 302 (683)
Q Consensus 257 ~g~C~C~~~G~~G~~C~~~~~~~C~~~C~~~G~C~~g~C~C~~G~~ 302 (683)
.++|.=. -..|..|+.. .+|..+..|++|+|.|.+||.
T Consensus 9 ~~~C~~~--~~~g~~C~~~------~qC~~~s~C~~g~C~C~~g~~ 46 (52)
T PF01683_consen 9 NGQCVPR--VQPGESCESD------EQCIGGSVCVNGRCQCPPGYV 46 (52)
T ss_pred CCEECcc--CCCCCCCCCc------CCCCCcCEEcCCEeECCCCCE
Confidence 4444432 3456667653 356688899999999999974
No 65
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=75.70 E-value=1.8 Score=38.96 Aligned_cols=29 Identities=38% Similarity=0.834 Sum_probs=22.1
Q ss_pred CCCCCCCEEeCCC----CceeeCCCCcCCCCCcc
Q 005688 125 SDCSGQGVCNHEL----GQCRCFHGFRGKGCSER 154 (683)
Q Consensus 125 ~~C~~~G~C~~~~----G~C~C~~G~~G~~Ce~~ 154 (683)
+-|-+ |+|.... -.|.|..||+|..||..
T Consensus 51 ~YClH-G~C~yI~dl~~~~CrC~~GYtGeRCEh~ 83 (139)
T PHA03099 51 GYCLH-GDCIHARDIDGMYCRCSHGYTGIRCQHV 83 (139)
T ss_pred CEeEC-CEEEeeccCCCceeECCCCcccccccce
Confidence 34765 5996433 27999999999999975
No 66
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=73.55 E-value=3 Score=39.45 Aligned_cols=48 Identities=17% Similarity=0.183 Sum_probs=35.1
Q ss_pred chhHHHHhhcCceecccCCC-CCchhHHHHHhcCceeEEeeCCeeecccc
Q 005688 628 SENYHEDLSSSVFCGVLPGD-GWSGRMEDSILQGCIPVVIQCKFIFSTTL 676 (683)
Q Consensus 628 ~~~y~~~m~~S~FCL~p~Gd-~~s~Rl~dAi~~GCIPViisD~~~l~~~~ 676 (683)
..++.+.++.|.+-+.|.-. +++.-++|||.+|| |||+++.-....++
T Consensus 83 ~~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~-pvI~~~~~~~~e~~ 131 (172)
T PF00534_consen 83 DDELDELYKSSDIFVSPSRNEGFGLSLLEAMACGC-PVIASDIGGNNEII 131 (172)
T ss_dssp HHHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT--EEEEESSTHHHHHS
T ss_pred ccccccccccceecccccccccccccccccccccc-ceeeccccCCceee
Confidence 46788999999999999874 77888999999999 77777744443333
No 67
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=67.04 E-value=5.8 Score=41.78 Aligned_cols=50 Identities=12% Similarity=0.016 Sum_probs=40.0
Q ss_pred CchhHHHHhhcCceecccCCC-CCchhHHHHHhcCceeEEeeCCeeeccccc
Q 005688 627 RSENYHEDLSSSVFCGVLPGD-GWSGRMEDSILQGCIPVVIQCKFIFSTTLC 677 (683)
Q Consensus 627 ~~~~y~~~m~~S~FCL~p~Gd-~~s~Rl~dAi~~GCIPViisD~~~l~~~~~ 677 (683)
...++.+.|+.|.+++.|... +.+..++|||.+|+ |||.+|.-.+..++.
T Consensus 256 ~~~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~-PvI~~~~~~~~~~i~ 306 (364)
T cd03814 256 DGEELAAAYASADVFVFPSRTETFGLVVLEAMASGL-PVVAPDAGGPADIVT 306 (364)
T ss_pred CHHHHHHHHHhCCEEEECcccccCCcHHHHHHHcCC-CEEEcCCCCchhhhc
Confidence 346678999999999998874 66778999999998 888888766555443
No 68
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=66.01 E-value=6.9 Score=41.08 Aligned_cols=50 Identities=12% Similarity=-0.012 Sum_probs=39.2
Q ss_pred chhHHHHhhcCceecccCC--CCCchhHHHHHhcCceeEEeeCCeeecccccC
Q 005688 628 SENYHEDLSSSVFCGVLPG--DGWSGRMEDSILQGCIPVVIQCKFIFSTTLCP 678 (683)
Q Consensus 628 ~~~y~~~m~~S~FCL~p~G--d~~s~Rl~dAi~~GCIPViisD~~~l~~~~~~ 678 (683)
..+..+.|+.+.+.+.|.- .+++.-++|||.+|+ |||.+|.-.+.+++..
T Consensus 234 ~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~-PvI~~~~~~~~e~i~~ 285 (335)
T cd03802 234 GAEKAELLGNARALLFPILWEEPFGLVMIEAMACGT-PVIAFRRGAVPEVVED 285 (335)
T ss_pred HHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCC-CEEEeCCCCchhheeC
Confidence 3456789999999999864 466777999999996 9999987666555554
No 69
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=65.96 E-value=5.1 Score=36.21 Aligned_cols=26 Identities=35% Similarity=1.050 Sum_probs=20.8
Q ss_pred CCCCceec------CCeeecCCCcccCCCCCCc
Q 005688 284 CSGHGHCR------GGFCQCDSGWYGVDCSIPS 310 (683)
Q Consensus 284 C~~~G~C~------~g~C~C~~G~~G~~C~~~~ 310 (683)
|-+ |+|. ...|.|..||+|..|+...
T Consensus 53 ClH-G~C~yI~dl~~~~CrC~~GYtGeRCEh~d 84 (139)
T PHA03099 53 CLH-GDCIHARDIDGMYCRCSHGYTGIRCQHVV 84 (139)
T ss_pred eEC-CEEEeeccCCCceeECCCCccccccccee
Confidence 554 4885 4589999999999998754
No 70
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=63.78 E-value=2.1 Score=41.39 Aligned_cols=133 Identities=23% Similarity=0.569 Sum_probs=65.3
Q ss_pred CCEEeCCCC--ceeeCCCCc---CCCCCccccCCCCCCCCCCCCCCCcccccCC--Ccc-------cCCCceEeeCCCcc
Q 005688 130 QGVCNHELG--QCRCFHGFR---GKGCSERIHFQCNFPKTPELPYGRWVVSICP--THC-------DTTRAMCFCGEGTK 195 (683)
Q Consensus 130 ~G~C~~~~G--~C~C~~G~~---G~~Ce~~~~~~C~~~~~~~~~~g~~~~~~C~--~~C-------~~~~g~C~C~~G~~ 195 (683)
+|......+ +|.|++||. -..||.. ..|..... ....|. +.| ......|.|..||.
T Consensus 10 NG~LiQMSNHfEC~Cnegfvl~~EntCE~k--v~C~~~e~--------~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~ 79 (197)
T PF06247_consen 10 NGYLIQMSNHFECKCNEGFVLKNENTCEEK--VECDKLEN--------VNKPCGDYAKCINQANKGEERAYKCDCINGYI 79 (197)
T ss_dssp TEEEEEESSEEEEEESTTEEEEETTEEEE------SG-GG--------TTSEEETTEEEEE-SSTTSSTSEEEEE-TTEE
T ss_pred CCEEEEccCceEEEcCCCcEEccccccccc--eecCcccc--------cCccccchhhhhcCCCcccceeEEEecccCce
Confidence 455554444 899999995 4567763 35553110 011332 122 12345899999997
Q ss_pred cCCCCCCCCCCCcccCCCCCCCCCCCCCccCCCCCccCCCCCCCccccCCcccccccccccccccccCCCCCC---CCCc
Q 005688 196 YPNRPVAEACGFQVNLPSQPGAPKSTDWAKADLDNIFTTNGSKPGWCNVDPEEAYALKVQFKEECDCKYDGLL---GQFC 272 (683)
Q Consensus 196 G~~C~~~~~C~~~~~~~~~~~~~C~~gw~g~~c~~~~~~~C~~~G~C~~~~~~~~~~g~c~~g~C~C~~~G~~---G~~C 272 (683)
-.. ..|.. ..|. ...| +.|.|..++.. -....|.|. -|+. +..|
T Consensus 80 ~~~----~vCvp------------------~~C~---~~~C-g~GKCI~d~~~------~~~~~CSC~-IGkV~~dn~kC 126 (197)
T PF06247_consen 80 LKQ----GVCVP------------------NKCN---NKDC-GSGKCILDPDN------PNNPTCSCN-IGKVPDDNKKC 126 (197)
T ss_dssp ESS----SSEEE------------------GGGS---S----TTEEEEEEEGG------GSEEEEEE--TEEETTTTTES
T ss_pred eeC----CeEch------------------hhcC---ceec-CCCeEEecCCC------CCCceeEee-eceEeccCCcc
Confidence 432 11110 0111 2233 36888655431 013389998 8887 4567
Q ss_pred cccCCCCcCCCCCCCceec--C--CeeecCCCcccCC
Q 005688 273 EVPVSSTCVNQCSGHGHCR--G--GFCQCDSGWYGVD 305 (683)
Q Consensus 273 ~~~~~~~C~~~C~~~G~C~--~--g~C~C~~G~~G~~ 305 (683)
...-+..|..-|..+-.|. + ++|.|+.|+.|..
T Consensus 127 tk~G~T~C~LKCk~nE~CK~~~~~Y~C~~~~~~~~~~ 163 (197)
T PF06247_consen 127 TKTGETKCSLKCKENEECKLVDGYYKCVCKEGFPGDG 163 (197)
T ss_dssp EEEE--------TTTEEEEEETTEEEEEE-TT-EEET
T ss_pred cCCCccceeeecCCCcceeeeCcEEEeecCCCCCCCC
Confidence 7665678888898899996 3 3899999997654
No 71
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=62.66 E-value=6.8 Score=41.08 Aligned_cols=48 Identities=10% Similarity=0.103 Sum_probs=38.1
Q ss_pred chhHHHHhhcCceecccC--CCCCchhHHHHHhcCceeEEeeCCeeecccc
Q 005688 628 SENYHEDLSSSVFCGVLP--GDGWSGRMEDSILQGCIPVVIQCKFIFSTTL 676 (683)
Q Consensus 628 ~~~y~~~m~~S~FCL~p~--Gd~~s~Rl~dAi~~GCIPViisD~~~l~~~~ 676 (683)
..++.+.|+.|.+.+.|. +.+++..++|||.+| +|||.++.-.+..++
T Consensus 253 ~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G-~Pvi~~~~~~~~e~i 302 (359)
T cd03823 253 QEEIDDFYAEIDVLVVPSIWPENFPLVIREALAAG-VPVIASDIGGMAELV 302 (359)
T ss_pred HHHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCC-CCEEECCCCCHHHHh
Confidence 467889999999999986 456777899999999 888888765444443
No 72
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=60.48 E-value=8.5 Score=40.04 Aligned_cols=48 Identities=13% Similarity=0.079 Sum_probs=37.6
Q ss_pred chhHHHHhhcCceecccCCC-CCchhHHHHHhcCceeEEeeCCeeecccc
Q 005688 628 SENYHEDLSSSVFCGVLPGD-GWSGRMEDSILQGCIPVVIQCKFIFSTTL 676 (683)
Q Consensus 628 ~~~y~~~m~~S~FCL~p~Gd-~~s~Rl~dAi~~GCIPViisD~~~l~~~~ 676 (683)
..+..+.|+.|.+.+.|... +.+..++|||.+| +|||.+|.-....++
T Consensus 254 ~~~~~~~~~~adi~i~ps~~e~~~~~~~Ea~~~G-~Pvi~s~~~~~~~~i 302 (359)
T cd03808 254 RDDVPELLAAADVFVLPSYREGLPRVLLEAMAMG-RPVIATDVPGCREAV 302 (359)
T ss_pred cccHHHHHHhccEEEecCcccCcchHHHHHHHcC-CCEEEecCCCchhhh
Confidence 45678999999999988763 6677799999999 588888865554444
No 73
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=60.48 E-value=8.4 Score=29.10 Aligned_cols=25 Identities=40% Similarity=1.056 Sum_probs=20.3
Q ss_pred CCC--CCCCCCCCEEeCCCCceeeCCCCc
Q 005688 121 KSC--KSDCSGQGVCNHELGQCRCFHGFR 147 (683)
Q Consensus 121 ~~C--~~~C~~~G~C~~~~G~C~C~~G~~ 147 (683)
..| ...|.++..|. .|.|.|++||.
T Consensus 20 ~~C~~~~qC~~~s~C~--~g~C~C~~g~~ 46 (52)
T PF01683_consen 20 ESCESDEQCIGGSVCV--NGRCQCPPGYV 46 (52)
T ss_pred CCCCCcCCCCCcCEEc--CCEeECCCCCE
Confidence 446 45688999997 89999999974
No 74
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=57.59 E-value=3.1 Score=29.21 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=16.9
Q ss_pred CCCCCccccCCcccccccccccccccccCCCCCCCC
Q 005688 235 NGSKPGWCNVDPEEAYALKVQFKEECDCKYDGLLGQ 270 (683)
Q Consensus 235 ~C~~~G~C~~~~~~~~~~g~c~~g~C~C~~~G~~G~ 270 (683)
.|+.++.|..... ...|.|+ +||.|.
T Consensus 7 ~C~~nA~C~~~~~---------~~~C~C~-~Gy~Gd 32 (36)
T PF12947_consen 7 GCHPNATCTNTGG---------SYTCTCK-PGYEGD 32 (36)
T ss_dssp GS-TTCEEEE-TT---------SEEEEE--CEEECC
T ss_pred CCCCCcEeecCCC---------CEEeECC-CCCccC
Confidence 4667777765433 5789999 999975
No 75
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=55.95 E-value=5.7 Score=28.66 Aligned_cols=21 Identities=29% Similarity=0.865 Sum_probs=17.1
Q ss_pred CCCCCCceec----CCeeecCCCcc
Q 005688 282 NQCSGHGHCR----GGFCQCDSGWY 302 (683)
Q Consensus 282 ~~C~~~G~C~----~g~C~C~~G~~ 302 (683)
+.|..++.|+ ..+|.|++||.
T Consensus 10 ~~C~~~~~C~N~~Gsy~C~C~~Gy~ 34 (42)
T PF07645_consen 10 HNCPENGTCVNTEGSYSCSCPPGYE 34 (42)
T ss_dssp SSSSTTSEEEEETTEEEEEESTTEE
T ss_pred CcCCCCCEEEcCCCCEEeeCCCCcE
Confidence 4688889997 34899999997
No 76
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=55.47 E-value=10 Score=39.56 Aligned_cols=46 Identities=13% Similarity=0.047 Sum_probs=36.7
Q ss_pred chhHHHHhhcCceecccCC-CCCchhHHHHHhcCceeEEeeCCeeecc
Q 005688 628 SENYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQCKFIFST 674 (683)
Q Consensus 628 ~~~y~~~m~~S~FCL~p~G-d~~s~Rl~dAi~~GCIPViisD~~~l~~ 674 (683)
..++.+.|++|.+.+.|.- ++++..++||+.+|+ |||.++.-.+..
T Consensus 269 ~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~-pvI~~~~~~~~~ 315 (377)
T cd03798 269 HEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGL-PVVATDVGGIPE 315 (377)
T ss_pred HHHHHHHHHhcCeeecchhhccCChHHHHHHhcCC-CEEEecCCChHH
Confidence 3667899999999998876 467788999999998 788877554433
No 77
>KOG1388 consensus Attractin and platelet-activating factor acetylhydrolase [Signal transduction mechanisms; Defense mechanisms]
Probab=54.90 E-value=7.4 Score=38.56 Aligned_cols=73 Identities=29% Similarity=0.606 Sum_probs=40.7
Q ss_pred CCCCCCEEeCCCCce-eeCCCCcCCCCCccccCCCCCCCCCCCCCCCcccccCC---CcccCCCceEee-CCCcccCCCC
Q 005688 126 DCSGQGVCNHELGQC-RCFHGFRGKGCSERIHFQCNFPKTPELPYGRWVVSICP---THCDTTRAMCFC-GEGTKYPNRP 200 (683)
Q Consensus 126 ~C~~~G~C~~~~G~C-~C~~G~~G~~Ce~~~~~~C~~~~~~~~~~g~~~~~~C~---~~C~~~~g~C~C-~~G~~G~~C~ 200 (683)
.|++++.|+.. -.| .|..|-+|..|+. |..+-.++...+.+....|. ..|....++|+| .-|..|..|+
T Consensus 53 ~cNGh~~c~t~-~v~~~~~N~~~g~~c~k-----c~~g~~GdtN~g~c~~~~~~g~~~~~~~~~~~c~c~~kgvvgd~c~ 126 (217)
T KOG1388|consen 53 QCNGHSDCNTQ-HVCWRCENGTTGAHCEK-----CIVGFYGDTNGGKCQPCDCNGGASACVTLTGKCFCTTKGVVGDLCP 126 (217)
T ss_pred HhcCCCCcccc-eeeeeccCccccccCCc-----eEEEEEecCCCCccCHhhhcCCeeeeeccCCccccccceEecccCc
Confidence 46677777642 233 4666666666664 22221111112223333343 346667899999 5689998887
Q ss_pred CCCC
Q 005688 201 VAEA 204 (683)
Q Consensus 201 ~~~~ 204 (683)
.++.
T Consensus 127 ~~e~ 130 (217)
T KOG1388|consen 127 KCEV 130 (217)
T ss_pred cccc
Confidence 6543
No 78
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=50.69 E-value=14 Score=38.75 Aligned_cols=47 Identities=15% Similarity=0.219 Sum_probs=37.4
Q ss_pred hhHHHHhhcCceecccCC-CCCchhHHHHHhcCceeEEeeCCeeecccc
Q 005688 629 ENYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQCKFIFSTTL 676 (683)
Q Consensus 629 ~~y~~~m~~S~FCL~p~G-d~~s~Rl~dAi~~GCIPViisD~~~l~~~~ 676 (683)
.++.+.|+.+.+.+.|.- .+++.-++|||.+|+ |||.+|...+.+++
T Consensus 273 ~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~-PvI~~~~~~~~~~~ 320 (375)
T cd03821 273 EDKAAALADADLFVLPSHSENFGIVVAEALACGT-PVVTTDKVPWQELI 320 (375)
T ss_pred HHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCC-CEEEcCCCCHHHHh
Confidence 567789999999988876 466777999999995 88988866554444
No 79
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=50.58 E-value=17 Score=38.44 Aligned_cols=48 Identities=8% Similarity=0.059 Sum_probs=36.7
Q ss_pred hhHHHHhhcCceecccCC-CCCchhHHHHHhcCceeEEeeCCeeeccccc
Q 005688 629 ENYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQCKFIFSTTLC 677 (683)
Q Consensus 629 ~~y~~~m~~S~FCL~p~G-d~~s~Rl~dAi~~GCIPViisD~~~l~~~~~ 677 (683)
.+..+.|+.+.+-+.|.. .+++.-++|||.+|+ |||.+|.-.+.+++.
T Consensus 254 ~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~-PvI~~~~~~~~e~i~ 302 (360)
T cd04951 254 DDIAAYYNAADLFVLSSAWEGFGLVVAEAMACEL-PVVATDAGGVREVVG 302 (360)
T ss_pred ccHHHHHHhhceEEecccccCCChHHHHHHHcCC-CEEEecCCChhhEec
Confidence 456788999999888776 466777999999999 888888655544443
No 80
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=49.34 E-value=17 Score=37.71 Aligned_cols=49 Identities=12% Similarity=0.066 Sum_probs=38.1
Q ss_pred chhHHHHhhcCceecccCC-CCCchhHHHHHhcCceeEEeeCCeeeccccc
Q 005688 628 SENYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQCKFIFSTTLC 677 (683)
Q Consensus 628 ~~~y~~~m~~S~FCL~p~G-d~~s~Rl~dAi~~GCIPViisD~~~l~~~~~ 677 (683)
..++.+.|+.|.+-+.|.- ++.+..++||+.+|+ |||.+|.-.+.+++.
T Consensus 266 ~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~-pvI~~~~~~~~~~~~ 315 (374)
T cd03801 266 DEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGL-PVVASDVGGIPEVVE 315 (374)
T ss_pred hhhHHHHHHhcCEEEecchhccccchHHHHHHcCC-cEEEeCCCChhHHhc
Confidence 4778899999999998875 366778999999996 788888655544443
No 81
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=48.15 E-value=18 Score=38.05 Aligned_cols=42 Identities=21% Similarity=0.051 Sum_probs=34.9
Q ss_pred chhHHHHhhcCceecccCC-C--CCchhHHHHHhcCceeEEeeCCe
Q 005688 628 SENYHEDLSSSVFCGVLPG-D--GWSGRMEDSILQGCIPVVIQCKF 670 (683)
Q Consensus 628 ~~~y~~~m~~S~FCL~p~G-d--~~s~Rl~dAi~~GCIPViisD~~ 670 (683)
..++.+.|+.|.+.+.|.- . +++.-+.|||.+|+ |||.+|.-
T Consensus 258 ~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~-PvI~~~~~ 302 (366)
T cd03822 258 DEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGK-PVISTPVG 302 (366)
T ss_pred HHHHHHHHhhcCEEEecccccccccchHHHHHHHcCC-CEEecCCC
Confidence 4678899999999998876 4 56777999999999 99998853
No 82
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=47.72 E-value=16 Score=38.01 Aligned_cols=45 Identities=13% Similarity=0.062 Sum_probs=35.8
Q ss_pred chhHHHHhhcCceecccCCC-CCchhHHHHHhcCceeEEeeCCeeec
Q 005688 628 SENYHEDLSSSVFCGVLPGD-GWSGRMEDSILQGCIPVVIQCKFIFS 673 (683)
Q Consensus 628 ~~~y~~~m~~S~FCL~p~Gd-~~s~Rl~dAi~~GCIPViisD~~~l~ 673 (683)
..+..+.|+.+.+.+.|... +++.-++|||.+| +|||.+|.-...
T Consensus 259 ~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g-~PvI~~~~~~~~ 304 (365)
T cd03807 259 RSDVPALLNALDVFVLSSLSEGFPNVLLEAMACG-LPVVATDVGDNA 304 (365)
T ss_pred cccHHHHHHhCCEEEeCCccccCCcHHHHHHhcC-CCEEEcCCCChH
Confidence 35577999999999988774 6777899999999 588888755443
No 83
>PF05686 Glyco_transf_90: Glycosyl transferase family 90; InterPro: IPR006598 Cryptococcus neoformans is a pathogenic fungus which most commonly affects the central nervous system and causes fatal meningoencephalitis primarily in patients with AIDS. This fungus produces a thick extracellular polysaccharide capsule which is well recognised as a virulence factor. CAP10 is required for capsule formation and virulence [].
Probab=47.16 E-value=27 Score=38.58 Aligned_cols=100 Identities=19% Similarity=0.259 Sum_probs=58.7
Q ss_pred CCCCceeEEeccCCCCCCCCCCCCCCccHHHHHHHHHHhcCCCCCccccCcccCcceE--EecCCchhHHHHhhcCceec
Q 005688 565 REKRKTLFYFNGNLGSAYPNGRPESSYSMGVRQKLAEEYGSSPNKEGKLGKQHAEDVI--VTSLRSENYHEDLSSSVFCG 642 (683)
Q Consensus 565 ~~~R~~L~~F~G~~~~~~~~~~~~~~ys~~iR~~L~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~y~~~m~~S~FCL 642 (683)
=++|.-.+||+|+... +.+|+.|++.-.+.++.... .-...+.. ........=++...+-||=+
T Consensus 154 W~~K~p~afWRG~~~~------------~~~R~~L~~~~~~~~~~~~a--~i~~~d~~~~~~~~~~~~~l~~~~~yKYli 219 (395)
T PF05686_consen 154 WEDKKPKAFWRGSPTV------------AETRQRLVRCSRSHPDLWDA--RITKQDWDKEYKPGFKHVPLEDQCKYKYLI 219 (395)
T ss_pred hhhcccceEECCCcCC------------CcchhHHHHHhccCCcccee--eechhhhhhhccccccccCHHHHhhhheee
Confidence 3457788999998632 23799988765443321100 00000000 00011112246677888989
Q ss_pred ccCCCCCchhHHHHHhcCceeEEeeCCee--ecccccC
Q 005688 643 VLPGDGWSGRMEDSILQGCIPVVIQCKFI--FSTTLCP 678 (683)
Q Consensus 643 ~p~Gd~~s~Rl~dAi~~GCIPViisD~~~--l~~~~~~ 678 (683)
..-|.+||.|+.=-+.+|.|.+.+...+. +...|.|
T Consensus 220 ~idG~~~S~RlkylL~c~SvVl~~~~~~~e~f~~~L~P 257 (395)
T PF05686_consen 220 YIDGNAWSGRLKYLLACNSVVLKVKSPYYEFFYRALKP 257 (395)
T ss_pred cCCCceeehhHHHHHcCCceEEEeCCcHHHHHHhhhcc
Confidence 99999999999888999999888754442 3444544
No 84
>KOG3514 consensus Neurexin III-alpha [Signal transduction mechanisms]
Probab=46.04 E-value=12 Score=45.19 Aligned_cols=34 Identities=32% Similarity=0.914 Sum_probs=27.7
Q ss_pred CCC-CCCCCCCCEEeCCCC--ceeeC-CCCcCCCCCcc
Q 005688 121 KSC-KSDCSGQGVCNHELG--QCRCF-HGFRGKGCSER 154 (683)
Q Consensus 121 ~~C-~~~C~~~G~C~~~~G--~C~C~-~G~~G~~Ce~~ 154 (683)
+.| +++|.|+|+|...-+ .|.|. .||.|+.||..
T Consensus 624 ~~C~~nPC~N~g~C~egwNrfiCDCs~T~~~G~~CerE 661 (1591)
T KOG3514|consen 624 KICESNPCQNGGKCSEGWNRFICDCSGTGFEGRTCERE 661 (1591)
T ss_pred cccCCCcccCCCCccccccccccccccCcccCccccce
Confidence 589 899999999984322 79997 58999999964
No 85
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=45.22 E-value=21 Score=31.57 Aligned_cols=28 Identities=32% Similarity=0.924 Sum_probs=22.0
Q ss_pred CCC--CCCCCCCCEEeCCCC-ceeeCCCCcC
Q 005688 121 KSC--KSDCSGQGVCNHELG-QCRCFHGFRG 148 (683)
Q Consensus 121 ~~C--~~~C~~~G~C~~~~G-~C~C~~G~~G 148 (683)
++| ...|..+|.|+.... .|.|.+||.-
T Consensus 78 d~Cd~y~~CG~~g~C~~~~~~~C~Cl~GF~P 108 (110)
T PF00954_consen 78 DQCDVYGFCGPNGICNSNNSPKCSCLPGFEP 108 (110)
T ss_pred cCCCCccccCCccEeCCCCCCceECCCCcCC
Confidence 577 467999999985433 8999999964
No 86
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=45.12 E-value=69 Score=34.92 Aligned_cols=49 Identities=18% Similarity=0.036 Sum_probs=35.4
Q ss_pred chhHHHHhhcCceecccCC-CCCchhHHHHHhcCceeEEeeCCeeeccccc
Q 005688 628 SENYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQCKFIFSTTLC 677 (683)
Q Consensus 628 ~~~y~~~m~~S~FCL~p~G-d~~s~Rl~dAi~~GCIPViisD~~~l~~~~~ 677 (683)
..++.+.|+.|...+.|.- .+.+.-++|||.+|+ |||.+|.-.+.+++.
T Consensus 291 ~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~-PVIas~~~g~~e~i~ 340 (396)
T cd03818 291 YDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGC-LVVGSDTAPVREVIT 340 (396)
T ss_pred HHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCC-CEEEcCCCCchhhcc
Confidence 3567789999998887654 244556999999998 888887554444443
No 87
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=43.07 E-value=24 Score=37.30 Aligned_cols=48 Identities=8% Similarity=0.022 Sum_probs=36.4
Q ss_pred chhHHHHhhcCceecccC--CCCCchhHHHHHhcCceeEEeeCCeeecccc
Q 005688 628 SENYHEDLSSSVFCGVLP--GDGWSGRMEDSILQGCIPVVIQCKFIFSTTL 676 (683)
Q Consensus 628 ~~~y~~~m~~S~FCL~p~--Gd~~s~Rl~dAi~~GCIPViisD~~~l~~~~ 676 (683)
..++.+.|+.|...+.|. ..+++.-++|||.+|+ |||++|.-...+++
T Consensus 254 ~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~-PvI~~~~~~~~e~i 303 (355)
T cd03819 254 CSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGR-PVIASDHGGARETV 303 (355)
T ss_pred cccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCC-CEEEcCCCCcHHHH
Confidence 456789999999988876 3466777999999998 88888754444333
No 88
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=41.60 E-value=53 Score=39.04 Aligned_cols=65 Identities=26% Similarity=0.591 Sum_probs=36.8
Q ss_pred CCCCCEEeCCCCceeeCCCCc----CCCCCccccCCCCCCCCCCC-CCCCcccccCCCcccC-CCc--eEeeCCCcccCC
Q 005688 127 CSGQGVCNHELGQCRCFHGFR----GKGCSERIHFQCNFPKTPEL-PYGRWVVSICPTHCDT-TRA--MCFCGEGTKYPN 198 (683)
Q Consensus 127 C~~~G~C~~~~G~C~C~~G~~----G~~Ce~~~~~~C~~~~~~~~-~~g~~~~~~C~~~C~~-~~g--~C~C~~G~~G~~ 198 (683)
|++-|.=.--.|.|.|.+||. |..|+. |..+...-. -...| ..||.+-.. ..| .|.|..||+-..
T Consensus 248 C~~dGeWlvpiG~C~C~aGye~~~~~~~C~a-----Cp~G~yK~~~~~~~C--~~CP~~S~s~~ega~~C~C~~gyyRA~ 320 (996)
T KOG0196|consen 248 CSGDGEWLVPIGGCVCKAGYEEAENGKACQA-----CPPGTYKASQGDSLC--LPCPPNSHSSSEGATSCTCENGYYRAD 320 (996)
T ss_pred EcCCCcEEEEcCceeecCCCCcccCCCccee-----CCCCcccCCCCCCCC--CCCCCCCCCCCCCCCcccccCCcccCC
Confidence 766665544478999999995 566764 665422100 00111 245533322 223 799999987543
No 89
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=40.56 E-value=32 Score=36.61 Aligned_cols=44 Identities=11% Similarity=0.020 Sum_probs=34.6
Q ss_pred chhHHHHhhcCceecccCCCCCchhHHHHHhcCceeEEeeCCeee
Q 005688 628 SENYHEDLSSSVFCGVLPGDGWSGRMEDSILQGCIPVVIQCKFIF 672 (683)
Q Consensus 628 ~~~y~~~m~~S~FCL~p~Gd~~s~Rl~dAi~~GCIPViisD~~~l 672 (683)
..++.+.|+.+...+.|.=.+++.-++|||.+|+ |||.++.-..
T Consensus 252 ~~~~~~~~~~ad~~v~ps~e~~g~~~~Eama~G~-Pvi~~~~~~~ 295 (351)
T cd03804 252 DEELRDLYARARAFLFPAEEDFGIVPVEAMASGT-PVIAYGKGGA 295 (351)
T ss_pred HHHHHHHHHhCCEEEECCcCCCCchHHHHHHcCC-CEEEeCCCCC
Confidence 4567899999999888754666666899999997 9998875433
No 90
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=40.48 E-value=25 Score=39.47 Aligned_cols=48 Identities=10% Similarity=0.056 Sum_probs=38.3
Q ss_pred hhHHHHhhcCceecccCCC-CCchhHHHHHhcCceeEEeeCCeeeccccc
Q 005688 629 ENYHEDLSSSVFCGVLPGD-GWSGRMEDSILQGCIPVVIQCKFIFSTTLC 677 (683)
Q Consensus 629 ~~y~~~m~~S~FCL~p~Gd-~~s~Rl~dAi~~GCIPViisD~~~l~~~~~ 677 (683)
.++.+.|+.+...+.|... +++.-++|||.+| +|||.++.--+.+++.
T Consensus 323 ~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G-~PVI~s~~gg~~eiv~ 371 (465)
T PLN02871 323 DELSQAYASGDVFVMPSESETLGFVVLEAMASG-VPVVAARAGGIPDIIP 371 (465)
T ss_pred HHHHHHHHHCCEEEECCcccccCcHHHHHHHcC-CCEEEcCCCCcHhhhh
Confidence 6788999999999988764 5666799999999 9999987554544444
No 91
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=40.30 E-value=18 Score=30.39 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=22.5
Q ss_pred CCCchhHHHHHhcCceeEEeeCCeeecccccCc
Q 005688 647 DGWSGRMEDSILQGCIPVVIQCKFIFSTTLCPE 679 (683)
Q Consensus 647 d~~s~Rl~dAi~~GCIPViisD~~~l~~~~~~~ 679 (683)
++++.|+||+|.+|+ |||..+.-.+..++.+.
T Consensus 9 ~~~~~r~~E~~a~G~-~vi~~~~~~~~~~~~~~ 40 (92)
T PF13524_consen 9 DGPNMRIFEAMACGT-PVISDDSPGLREIFEDG 40 (92)
T ss_pred CCCchHHHHHHHCCC-eEEECChHHHHHHcCCC
Confidence 578899999999997 45555555555555443
No 92
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=39.85 E-value=28 Score=35.81 Aligned_cols=47 Identities=17% Similarity=0.113 Sum_probs=34.6
Q ss_pred hhHHHHhhcCceecccCC-CCCchhHHHHHhcCceeEEeeCCeeecccc
Q 005688 629 ENYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQCKFIFSTTL 676 (683)
Q Consensus 629 ~~y~~~m~~S~FCL~p~G-d~~s~Rl~dAi~~GCIPViisD~~~l~~~~ 676 (683)
.+..+.|+.|.+.+.|.- ++.+..++|||.+|+ |||.+|.-.+..++
T Consensus 255 ~~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~-PvI~~~~~~~~e~i 302 (353)
T cd03811 255 SNPYPYLKAADLFVLSSRYEGFPNVLLEAMALGT-PVVATDCPGPREIL 302 (353)
T ss_pred CCHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCC-CEEEcCCCChHHHh
Confidence 446689999999998865 466777999999997 56666654444433
No 93
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=38.94 E-value=31 Score=36.30 Aligned_cols=49 Identities=14% Similarity=0.097 Sum_probs=35.3
Q ss_pred chhHHHHhhcCceecccCC-------CCCchhHHHHHhcCceeEEeeCCeeeccccc
Q 005688 628 SENYHEDLSSSVFCGVLPG-------DGWSGRMEDSILQGCIPVVIQCKFIFSTTLC 677 (683)
Q Consensus 628 ~~~y~~~m~~S~FCL~p~G-------d~~s~Rl~dAi~~GCIPViisD~~~l~~~~~ 677 (683)
..++.+.|+++.+.+.|.- .+.+..++|||.+|+ |||.+|.-....++.
T Consensus 246 ~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~-Pvi~~~~~~~~~~i~ 301 (355)
T cd03799 246 QEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGL-PVISTDVSGIPELVE 301 (355)
T ss_pred hHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCC-CEEecCCCCcchhhh
Confidence 3678899999999998754 455677999999997 555566544444443
No 94
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=38.86 E-value=27 Score=37.60 Aligned_cols=47 Identities=11% Similarity=-0.063 Sum_probs=35.5
Q ss_pred hhHHHHhhcCceecccCCC-CCchhHHHHHhcCceeEEeeCCeeecccc
Q 005688 629 ENYHEDLSSSVFCGVLPGD-GWSGRMEDSILQGCIPVVIQCKFIFSTTL 676 (683)
Q Consensus 629 ~~y~~~m~~S~FCL~p~Gd-~~s~Rl~dAi~~GCIPViisD~~~l~~~~ 676 (683)
.++.+.|+.|...+.|.-. +++.-++|||.+| +|||.++.-....++
T Consensus 294 ~~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G-~Pvi~s~~~~~~e~i 341 (398)
T cd03800 294 EDLPALYRAADVFVNPALYEPFGLTALEAMACG-LPVVATAVGGPRDIV 341 (398)
T ss_pred HHHHHHHHhCCEEEecccccccCcHHHHHHhcC-CCEEECCCCCHHHHc
Confidence 5677889999999888653 5556699999999 699998754443333
No 95
>KOG3516 consensus Neurexin IV [Signal transduction mechanisms]
Probab=38.69 E-value=19 Score=44.14 Aligned_cols=34 Identities=29% Similarity=0.866 Sum_probs=28.8
Q ss_pred CCC-CCCCCCCCEEeCCCC---ceeeC-CCCcCCCCCccc
Q 005688 121 KSC-KSDCSGQGVCNHELG---QCRCF-HGFRGKGCSERI 155 (683)
Q Consensus 121 ~~C-~~~C~~~G~C~~~~G---~C~C~-~G~~G~~Ce~~~ 155 (683)
..| |+.|.++|.|+. .+ .|.|. .||+|..|+..+
T Consensus 546 drClPN~CehgG~C~Q-s~~~f~C~C~~TGY~GatCHtsi 584 (1306)
T KOG3516|consen 546 DRCLPNPCEHGGKCSQ-SWDDFECNCELTGYKGATCHTSI 584 (1306)
T ss_pred cccCCccccCCCcccc-cccceeEeccccccccccccCCC
Confidence 567 899999999985 44 89999 999999998653
No 96
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=38.55 E-value=28 Score=36.51 Aligned_cols=48 Identities=15% Similarity=0.034 Sum_probs=36.0
Q ss_pred chhHHHHhhcCceecccCCC-CC-----chhHHHHHhcCceeEEeeCCeeecccc
Q 005688 628 SENYHEDLSSSVFCGVLPGD-GW-----SGRMEDSILQGCIPVVIQCKFIFSTTL 676 (683)
Q Consensus 628 ~~~y~~~m~~S~FCL~p~Gd-~~-----s~Rl~dAi~~GCIPViisD~~~l~~~~ 676 (683)
..++.+.|+.+.+.+.|... ++ ..+++||+.+|+ |||.++.-....++
T Consensus 285 ~~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~-pvi~~~~~~~~~~~ 338 (394)
T cd03794 285 KEELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGK-PVLASVDGESAELV 338 (394)
T ss_pred hHHHHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCC-cEEEecCCCchhhh
Confidence 36788999999999988774 22 445999999995 88888766544333
No 97
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=38.28 E-value=34 Score=37.34 Aligned_cols=47 Identities=15% Similarity=0.130 Sum_probs=36.1
Q ss_pred chhHHHHhhcCceecccCC--CCCchhHHHHHhcCceeEEeeCCeeeccc
Q 005688 628 SENYHEDLSSSVFCGVLPG--DGWSGRMEDSILQGCIPVVIQCKFIFSTT 675 (683)
Q Consensus 628 ~~~y~~~m~~S~FCL~p~G--d~~s~Rl~dAi~~GCIPViisD~~~l~~~ 675 (683)
..+..+.|+.|...+.|.. .+++.-++|||.+| +|||.++.-...++
T Consensus 267 ~~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G-~PVI~s~~gg~~Ei 315 (380)
T PRK15484 267 PEKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAG-KPVLASTKGGITEF 315 (380)
T ss_pred HHHHHHHHHhCCEEEeCCCCccccccHHHHHHHcC-CCEEEeCCCCcHhh
Confidence 3567789999999998874 35566699999999 89999985444333
No 98
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=37.18 E-value=21 Score=22.70 Aligned_cols=14 Identities=36% Similarity=1.248 Sum_probs=10.4
Q ss_pred ceeeCCCCc----CCCCC
Q 005688 139 QCRCFHGFR----GKGCS 152 (683)
Q Consensus 139 ~C~C~~G~~----G~~Ce 152 (683)
+|.|++||. |..|+
T Consensus 3 ~C~C~~Gy~l~~d~~~C~ 20 (24)
T PF12662_consen 3 TCSCPPGYQLSPDGRSCE 20 (24)
T ss_pred EeeCCCCCcCCCCCCccc
Confidence 689999996 44554
No 99
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=36.85 E-value=25 Score=36.94 Aligned_cols=47 Identities=11% Similarity=0.072 Sum_probs=35.7
Q ss_pred chhHHHHhhcCceecccCC-CCCchhHHHHHhcCceeEEeeCCeeeccc
Q 005688 628 SENYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQCKFIFSTT 675 (683)
Q Consensus 628 ~~~y~~~m~~S~FCL~p~G-d~~s~Rl~dAi~~GCIPViisD~~~l~~~ 675 (683)
..++.+.|+.+.+.+.|.- ++++.-++|||.+|+ |||.++.-.+.++
T Consensus 263 ~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~-pvI~~~~~~~~e~ 310 (365)
T cd03809 263 DEELAALYRGARAFVFPSLYEGFGLPVLEAMACGT-PVIASNISSLPEV 310 (365)
T ss_pred hhHHHHHHhhhhhhcccchhccCCCCHHHHhcCCC-cEEecCCCCccce
Confidence 4567899999999988754 466667999999995 8888876444333
No 100
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=36.53 E-value=40 Score=35.86 Aligned_cols=46 Identities=13% Similarity=0.046 Sum_probs=34.1
Q ss_pred hhHHHHhhcCceecccCC-------CCCchhHHHHHhcCceeEEeeCCeeeccc
Q 005688 629 ENYHEDLSSSVFCGVLPG-------DGWSGRMEDSILQGCIPVVIQCKFIFSTT 675 (683)
Q Consensus 629 ~~y~~~m~~S~FCL~p~G-------d~~s~Rl~dAi~~GCIPViisD~~~l~~~ 675 (683)
.+..+.|+.|...+.|.- .+++..++|||.+|+ |||.+|.-....+
T Consensus 256 ~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~-PvI~s~~~~~~e~ 308 (367)
T cd05844 256 AEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGV-PVVATRHGGIPEA 308 (367)
T ss_pred HHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCC-CEEEeCCCCchhh
Confidence 567788999998776642 245677999999995 9999987654333
No 101
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=36.43 E-value=36 Score=30.47 Aligned_cols=40 Identities=18% Similarity=0.327 Sum_probs=28.0
Q ss_pred hhHHHHhhcCceecccC--CCCCchhHHHHHhcCceeEEeeCC
Q 005688 629 ENYHEDLSSSVFCGVLP--GDGWSGRMEDSILQGCIPVVIQCK 669 (683)
Q Consensus 629 ~~y~~~m~~S~FCL~p~--Gd~~s~Rl~dAi~~GCIPViisD~ 669 (683)
.++.+.|+++.+.+.|. +.+.+.+++|++.+|+ |||.++.
T Consensus 62 ~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~-pvi~~~~ 103 (135)
T PF13692_consen 62 EELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGK-PVIASDN 103 (135)
T ss_dssp HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT---EEEEHH
T ss_pred HHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCC-CEEECCc
Confidence 57899999999999886 4456778999999997 5555655
No 102
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=36.28 E-value=33 Score=29.90 Aligned_cols=32 Identities=22% Similarity=0.181 Sum_probs=22.6
Q ss_pred ccchhHHHHHHHHhcCCC-ccCCcCCCceEEEec
Q 005688 392 MLYGSQMAFYESILASPH-RTLNGEEADFFFVPV 424 (683)
Q Consensus 392 ~~y~~E~~~~e~L~~s~~-rT~dP~eAdlFyVP~ 424 (683)
++|..|. +...|.+..+ .|.+|++||+++|-.
T Consensus 12 N~~Dse~-i~~~l~~~G~~~~~~~e~AD~iiiNT 44 (98)
T PF00919_consen 12 NQYDSER-IASILQAAGYEIVDDPEEADVIIINT 44 (98)
T ss_pred cHHHHHH-HHHHHHhcCCeeecccccCCEEEEEc
Confidence 4555554 3345555555 899999999998875
No 103
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=35.64 E-value=39 Score=36.44 Aligned_cols=45 Identities=16% Similarity=-0.034 Sum_probs=34.0
Q ss_pred chhHHHHhhcCceecccCCC-CCchhHHHHHhcCceeEEeeCCeeec
Q 005688 628 SENYHEDLSSSVFCGVLPGD-GWSGRMEDSILQGCIPVVIQCKFIFS 673 (683)
Q Consensus 628 ~~~y~~~m~~S~FCL~p~Gd-~~s~Rl~dAi~~GCIPViisD~~~l~ 673 (683)
.....+.|+.|.+.+.|... +++.-++|||.+| +|||.+|.-...
T Consensus 290 ~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G-~PvI~s~~~~~~ 335 (392)
T cd03805 290 DSQKELLLSSARALLYTPSNEHFGIVPLEAMYAG-KPVIACNSGGPL 335 (392)
T ss_pred hHHHHHHHhhCeEEEECCCcCCCCchHHHHHHcC-CCEEEECCCCcH
Confidence 34556889999999987664 5555589999999 788888754443
No 104
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=32.97 E-value=47 Score=35.83 Aligned_cols=48 Identities=10% Similarity=0.051 Sum_probs=37.4
Q ss_pred chhHHHHhhcCceecccCC-CCCchhHHHHHhcCceeEEeeCCeeecccc
Q 005688 628 SENYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQCKFIFSTTL 676 (683)
Q Consensus 628 ~~~y~~~m~~S~FCL~p~G-d~~s~Rl~dAi~~GCIPViisD~~~l~~~~ 676 (683)
.....+.|+.+...+.|.- .++..-+.|||.+| +|||.+|.-.+..++
T Consensus 264 ~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G-~Pvv~s~~~~~~~~i 312 (372)
T cd03792 264 DLEVNALQRASTVVLQKSIREGFGLTVTEALWKG-KPVIAGPVGGIPLQI 312 (372)
T ss_pred HHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcC-CCEEEcCCCCchhhc
Confidence 4566788999999888765 46777799999999 799999865554444
No 105
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=32.73 E-value=49 Score=34.90 Aligned_cols=48 Identities=15% Similarity=0.019 Sum_probs=35.9
Q ss_pred chhHHHHhhcCceecccCCC-CCchhHHHHHhcCceeEEeeCCeeecccc
Q 005688 628 SENYHEDLSSSVFCGVLPGD-GWSGRMEDSILQGCIPVVIQCKFIFSTTL 676 (683)
Q Consensus 628 ~~~y~~~m~~S~FCL~p~Gd-~~s~Rl~dAi~~GCIPViisD~~~l~~~~ 676 (683)
...+.+.|+.|.+.+.|... +.+.-++|||.+|+ |||.+|.-.+.+++
T Consensus 255 ~~~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~g~-PvI~~~~~~~~e~~ 303 (365)
T cd03825 255 DESLALIYSAADVFVVPSLQENFPNTAIEALACGT-PVVAFDVGGIPDIV 303 (365)
T ss_pred HHHHHHHHHhCCEEEeccccccccHHHHHHHhcCC-CEEEecCCCChhhe
Confidence 34577899999999998773 66777999999997 57777654444444
No 106
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=31.35 E-value=45 Score=35.85 Aligned_cols=47 Identities=11% Similarity=0.113 Sum_probs=34.9
Q ss_pred hhHHHHhhcCceecccCC-CCCchhHHHHHhcCceeEEeeCCeeecccc
Q 005688 629 ENYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQCKFIFSTTL 676 (683)
Q Consensus 629 ~~y~~~m~~S~FCL~p~G-d~~s~Rl~dAi~~GCIPViisD~~~l~~~~ 676 (683)
.+..+.|+.|.+.+.|.- .+.+.-++|||.+| +|||.+|--....++
T Consensus 264 ~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G-~Pvv~s~~~g~~e~i 311 (374)
T TIGR03088 264 DDVPALMQALDLFVLPSLAEGISNTILEAMASG-LPVIATAVGGNPELV 311 (374)
T ss_pred CCHHHHHHhcCEEEeccccccCchHHHHHHHcC-CCEEEcCCCCcHHHh
Confidence 457788999998877754 35566699999999 599999865444443
No 107
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=30.71 E-value=53 Score=34.95 Aligned_cols=47 Identities=15% Similarity=0.125 Sum_probs=35.8
Q ss_pred hhHHHHhhcCceecccCC-CCCchhHHHHHhcCceeEEeeCCeeecccc
Q 005688 629 ENYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQCKFIFSTTL 676 (683)
Q Consensus 629 ~~y~~~m~~S~FCL~p~G-d~~s~Rl~dAi~~GCIPViisD~~~l~~~~ 676 (683)
.+..+.|+.+...+.|.- .+.+.-+.|||.+| +|||.+|.-.+.+++
T Consensus 262 ~~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g-~PvI~s~~~~~~e~i 309 (371)
T cd04962 262 DHVEELLSIADLFLLPSEKESFGLAALEAMACG-VPVVASNAGGIPEVV 309 (371)
T ss_pred ccHHHHHHhcCEEEeCCCcCCCccHHHHHHHcC-CCEEEeCCCCchhhh
Confidence 457799999999998864 35566699999999 899998765443333
No 108
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=30.70 E-value=56 Score=36.22 Aligned_cols=50 Identities=14% Similarity=0.057 Sum_probs=35.7
Q ss_pred chhHHHHhhcCceecccCCC-CCchhHHHHHhcCceeEEeeCCeeeccccc
Q 005688 628 SENYHEDLSSSVFCGVLPGD-GWSGRMEDSILQGCIPVVIQCKFIFSTTLC 677 (683)
Q Consensus 628 ~~~y~~~m~~S~FCL~p~Gd-~~s~Rl~dAi~~GCIPViisD~~~l~~~~~ 677 (683)
..++.+.|+.|...+.|.=+ +++.=++|||.+||+||.-..+=..++++.
T Consensus 315 ~~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~~~iv~ 365 (419)
T cd03806 315 FEELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPLLDIVV 365 (419)
T ss_pred HHHHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcEEEEcCCCCchheee
Confidence 46778999999999887653 566668999999996664432333456665
No 109
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=27.64 E-value=59 Score=35.51 Aligned_cols=39 Identities=13% Similarity=0.157 Sum_probs=31.6
Q ss_pred hHHHHhhcCceecccC--CCCCchhHHHHHhcCceeEEeeCC
Q 005688 630 NYHEDLSSSVFCGVLP--GDGWSGRMEDSILQGCIPVVIQCK 669 (683)
Q Consensus 630 ~y~~~m~~S~FCL~p~--Gd~~s~Rl~dAi~~GCIPViisD~ 669 (683)
+..+.|+.+...+.|. +.|....++|||.+|+ |||.++.
T Consensus 290 ~~~~~~~~adv~v~Ps~~~eG~~~~~lEAma~G~-PVV~t~~ 330 (397)
T TIGR03087 290 DVRPYLAHAAVAVAPLRIARGIQNKVLEAMAMAK-PVVASPE 330 (397)
T ss_pred CHHHHHHhCCEEEecccccCCcccHHHHHHHcCC-CEEecCc
Confidence 4668899999988884 4566667999999997 9999873
No 110
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=27.37 E-value=67 Score=35.46 Aligned_cols=48 Identities=19% Similarity=0.209 Sum_probs=35.6
Q ss_pred chhHHHHhhcCceecccC-----C--CCCchhHHHHHhcCceeEEeeCCeeecccc
Q 005688 628 SENYHEDLSSSVFCGVLP-----G--DGWSGRMEDSILQGCIPVVIQCKFIFSTTL 676 (683)
Q Consensus 628 ~~~y~~~m~~S~FCL~p~-----G--d~~s~Rl~dAi~~GCIPViisD~~~l~~~~ 676 (683)
..+..+.|+.+...+.|. | +|...-++|||.+| +|||.+|.--...++
T Consensus 289 ~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G-~PVI~t~~~g~~E~v 343 (406)
T PRK15427 289 SHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVG-IPVVSTLHSGIPELV 343 (406)
T ss_pred HHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCC-CCEEEeCCCCchhhh
Confidence 356789999999988874 2 35556699999999 599998755444333
No 111
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=26.75 E-value=64 Score=35.65 Aligned_cols=50 Identities=20% Similarity=0.105 Sum_probs=36.2
Q ss_pred CchhHHHHhhcCceecccC----CCCCchhHHHHHhcCceeEEeeCCeeeccccc
Q 005688 627 RSENYHEDLSSSVFCGVLP----GDGWSGRMEDSILQGCIPVVIQCKFIFSTTLC 677 (683)
Q Consensus 627 ~~~~y~~~m~~S~FCL~p~----Gd~~s~Rl~dAi~~GCIPViisD~~~l~~~~~ 677 (683)
...++.+.|+.|...+.|. |-+....++|||.+|. |||.++.-...++++
T Consensus 304 ~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~-PVI~s~~~~~~eiv~ 357 (415)
T cd03816 304 SAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGL-PVCALDFKCIDELVK 357 (415)
T ss_pred CHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCC-CEEEeCCCCHHHHhc
Confidence 3567888999999887532 3345566999999998 999988655554543
No 112
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=26.73 E-value=68 Score=34.43 Aligned_cols=48 Identities=10% Similarity=0.038 Sum_probs=34.1
Q ss_pred hhHHHHhhcCceecccCCC-CCchhHHHHHhcCceeEEeeC-Ceeeccccc
Q 005688 629 ENYHEDLSSSVFCGVLPGD-GWSGRMEDSILQGCIPVVIQC-KFIFSTTLC 677 (683)
Q Consensus 629 ~~y~~~m~~S~FCL~p~Gd-~~s~Rl~dAi~~GCIPViisD-~~~l~~~~~ 677 (683)
..+.+.++.+...+.|.-. +++.-++|||.+| +|||.+| .-.+.+++.
T Consensus 249 ~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G-~Pvv~s~~~~g~~eiv~ 298 (359)
T PRK09922 249 EVVQQKIKNVSALLLTSKFEGFPMTLLEAMSYG-IPCISSDCMSGPRDIIK 298 (359)
T ss_pred HHHHHHHhcCcEEEECCcccCcChHHHHHHHcC-CCEEEeCCCCChHHHcc
Confidence 3445667788888877653 6677799999999 7999998 333444443
No 113
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=26.53 E-value=89 Score=32.87 Aligned_cols=44 Identities=11% Similarity=0.051 Sum_probs=33.3
Q ss_pred chhHHHHhhcCceecccCC-CCCchhHHHHHhcCceeEEeeCCeee
Q 005688 628 SENYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQCKFIF 672 (683)
Q Consensus 628 ~~~y~~~m~~S~FCL~p~G-d~~s~Rl~dAi~~GCIPViisD~~~l 672 (683)
..+..+.++++.+.+.|.- .+++.-++|||.+|+ |||.+|.-..
T Consensus 257 ~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~-PvI~s~~~~~ 301 (358)
T cd03812 257 RNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGL-PCILSDTITK 301 (358)
T ss_pred cCCHHHHHHhcCEEEecccccCCCHHHHHHHHhCC-CEEEEcCCch
Confidence 4556789999999998875 366777999999997 5566664333
No 114
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=26.48 E-value=77 Score=33.39 Aligned_cols=44 Identities=16% Similarity=0.200 Sum_probs=32.0
Q ss_pred chhHHHHhhcCceecccCCC--CCchhHHHHHhcCceeEEeeCCeee
Q 005688 628 SENYHEDLSSSVFCGVLPGD--GWSGRMEDSILQGCIPVVIQCKFIF 672 (683)
Q Consensus 628 ~~~y~~~m~~S~FCL~p~Gd--~~s~Rl~dAi~~GCIPViisD~~~l 672 (683)
..+..+.++.+...+.|.-. +++.-++|||.+|+ |||.+|.-.+
T Consensus 258 ~~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~-PvI~s~~~~~ 303 (363)
T cd04955 258 DQELLELLRYAALFYLHGHSVGGTNPSLLEAMAYGC-PVLASDNPFN 303 (363)
T ss_pred hHHHHHHHHhCCEEEeCCccCCCCChHHHHHHHcCC-CEEEecCCcc
Confidence 45567888888888776543 45566999999999 7887764433
No 115
>KOG3516 consensus Neurexin IV [Signal transduction mechanisms]
Probab=25.70 E-value=42 Score=41.28 Aligned_cols=37 Identities=30% Similarity=0.734 Sum_probs=30.0
Q ss_pred CCc-CCCCCCCceec----CCeeecC-CCcccCCCCCCccCCC
Q 005688 278 STC-VNQCSGHGHCR----GGFCQCD-SGWYGVDCSIPSVMSS 314 (683)
Q Consensus 278 ~~C-~~~C~~~G~C~----~g~C~C~-~G~~G~~C~~~~~~~~ 314 (683)
+.| |+.|.++|.|. +..|.|. .||.|..|..+.....
T Consensus 546 drClPN~CehgG~C~Qs~~~f~C~C~~TGY~GatCHtsi~e~S 588 (1306)
T KOG3516|consen 546 DRCLPNPCEHGGKCSQSWDDFECNCELTGYKGATCHTSIYELS 588 (1306)
T ss_pred cccCCccccCCCcccccccceeEeccccccccccccCCCcchh
Confidence 466 47899999996 5699998 8999999998765544
No 116
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=24.94 E-value=21 Score=34.74 Aligned_cols=60 Identities=23% Similarity=0.540 Sum_probs=34.9
Q ss_pred CCCCCCccccCCcccccccccccccccccCCCCCCC--CCccccCCCCcCC-CCCCCceec-------CCeeecCCCcc
Q 005688 234 TNGSKPGWCNVDPEEAYALKVQFKEECDCKYDGLLG--QFCEVPVSSTCVN-QCSGHGHCR-------GGFCQCDSGWY 302 (683)
Q Consensus 234 ~~C~~~G~C~~~~~~~~~~g~c~~g~C~C~~~G~~G--~~C~~~~~~~C~~-~C~~~G~C~-------~g~C~C~~G~~ 302 (683)
..|.+.+.|..... .+......|.|. +||+- ..|-. ..|.+ .|. .|.|+ ...|.|.-|+.
T Consensus 50 K~Cgdya~C~~~~~----~~~~~~~~C~C~-~gY~~~~~vCvp---~~C~~~~Cg-~GKCI~d~~~~~~~~CSC~IGkV 119 (197)
T PF06247_consen 50 KPCGDYAKCINQAN----KGEERAYKCDCI-NGYILKQGVCVP---NKCNNKDCG-SGKCILDPDNPNNPTCSCNIGKV 119 (197)
T ss_dssp SEEETTEEEEE-SS----TTSSTSEEEEE--TTEEESSSSEEE---GGGSS---T-TEEEEEEEGGGSEEEEEE-TEEE
T ss_pred ccccchhhhhcCCC----cccceeEEEecc-cCceeeCCeEch---hhcCceecC-CCeEEecCCCCCCceeEeeeceE
Confidence 45667788854432 112246799998 99973 23432 25553 455 88997 22899999987
No 117
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=24.26 E-value=84 Score=32.19 Aligned_cols=41 Identities=12% Similarity=0.116 Sum_probs=32.8
Q ss_pred chhHHHHhhcCceecccCC-CCCchhHHHHHhcCceeEEeeCC
Q 005688 628 SENYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQCK 669 (683)
Q Consensus 628 ~~~y~~~m~~S~FCL~p~G-d~~s~Rl~dAi~~GCIPViisD~ 669 (683)
..+..+.|+++.+.+.|.. ++++..++|||.+|+. ||.+|.
T Consensus 243 ~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~P-vi~~~~ 284 (348)
T cd03820 243 TKNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLP-VISFDC 284 (348)
T ss_pred cchHHHHHHhCCEEEeCccccccCHHHHHHHHcCCC-EEEecC
Confidence 4677899999999998876 4667779999999975 556653
No 118
>KOG3514 consensus Neurexin III-alpha [Signal transduction mechanisms]
Probab=24.15 E-value=51 Score=40.12 Aligned_cols=34 Identities=26% Similarity=0.591 Sum_probs=23.3
Q ss_pred CCCCCCCccccCCcccccccccccccccccCCCCCCCCCcccc
Q 005688 233 TTNGSKPGWCNVDPEEAYALKVQFKEECDCKYDGLLGQFCEVP 275 (683)
Q Consensus 233 ~~~C~~~G~C~~~~~~~~~~g~c~~g~C~C~~~G~~G~~C~~~ 275 (683)
+++|.|+|.|... ++ ...|.|.-.||.|..|+..
T Consensus 628 ~nPC~N~g~C~eg----wN-----rfiCDCs~T~~~G~~CerE 661 (1591)
T KOG3514|consen 628 SNPCQNGGKCSEG----WN-----RFICDCSGTGFEGRTCERE 661 (1591)
T ss_pred CCcccCCCCcccc----cc-----ccccccccCcccCccccce
Confidence 5666777766432 11 3589998678999999864
No 119
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=23.53 E-value=1.6e+02 Score=30.43 Aligned_cols=104 Identities=16% Similarity=0.173 Sum_probs=63.1
Q ss_pred CCCCCceeEEeccCCCCCCCCCCCCCCccHHHHHHHHHHhcCCCCCc--cccCcccCcce--EEecCC-chhHHHHhhcC
Q 005688 564 PREKRKTLFYFNGNLGSAYPNGRPESSYSMGVRQKLAEEYGSSPNKE--GKLGKQHAEDV--IVTSLR-SENYHEDLSSS 638 (683)
Q Consensus 564 ~~~~R~~L~~F~G~~~~~~~~~~~~~~ys~~iR~~L~~~~~~~~~~~--~~~g~~~~~~~--~~~~~~-~~~y~~~m~~S 638 (683)
+=++|.-.++|+|+... +..|++|++...+.+... +....+..++. ...... ...=++...+-
T Consensus 79 pW~~K~~~a~WRG~~~~------------~~~R~~Lv~~~~~~p~~~da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 146 (256)
T smart00672 79 KWSDKNAYAYWRGNPTV------------ASERLDLIKCNQSSPELVNARITIQDWPGKCDGEEDAPGFKKSPLEEQCKH 146 (256)
T ss_pred CccccCcCccccCCCCC------------CcchHHHHHHhcCCcccceeEEEEecCCCCChHHhcccCcCCCCHHHHhhc
Confidence 44567788999998632 227999998876654321 00000000000 000000 11124666788
Q ss_pred ceecccCCCCCchhHHHHHhcCceeEEeeCCee--ecccccCc
Q 005688 639 VFCGVLPGDGWSGRMEDSILQGCIPVVIQCKFI--FSTTLCPE 679 (683)
Q Consensus 639 ~FCL~p~Gd~~s~Rl~dAi~~GCIPViisD~~~--l~~~~~~~ 679 (683)
||=+..-|.++|.||.=-+.++.|++.....+. +...|.|.
T Consensus 147 Kyli~~dG~~~S~rl~~~l~~~Svvl~~~~~~~~~~~~~L~P~ 189 (256)
T smart00672 147 KYKINIEGVAWSVRLKYILACDSVVLKVKPEYYEFFSRGLQPW 189 (256)
T ss_pred ceEEecCCccchhhHHHHHhcCceEEEeCCchhHHHHhcccCc
Confidence 999999999999999999999999998885443 35555553
No 120
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=23.51 E-value=82 Score=33.85 Aligned_cols=48 Identities=17% Similarity=0.030 Sum_probs=35.5
Q ss_pred chhHHHHhhcCceecccCC-CCCchhHHHHHhcCceeEEeeCCeeecccc
Q 005688 628 SENYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQCKFIFSTTL 676 (683)
Q Consensus 628 ~~~y~~~m~~S~FCL~p~G-d~~s~Rl~dAi~~GCIPViisD~~~l~~~~ 676 (683)
..+..+.|+.|...+.|.- ++.+.=++|||.+|+ |||.+|.-...+++
T Consensus 271 ~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~-PvI~s~~~~~~e~i 319 (388)
T TIGR02149 271 KEELVELLSNAEVFVCPSIYEPLGIVNLEAMACGT-PVVASATGGIPEVV 319 (388)
T ss_pred HHHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCC-CEEEeCCCCHHHHh
Confidence 4567789999999888754 344555899999998 89998755444444
No 121
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=23.43 E-value=74 Score=33.37 Aligned_cols=45 Identities=11% Similarity=0.005 Sum_probs=33.9
Q ss_pred chhHHHHhhcCceecccC---CCCCchhHHHHHhcCceeEEeeCCeeec
Q 005688 628 SENYHEDLSSSVFCGVLP---GDGWSGRMEDSILQGCIPVVIQCKFIFS 673 (683)
Q Consensus 628 ~~~y~~~m~~S~FCL~p~---Gd~~s~Rl~dAi~~GCIPViisD~~~l~ 673 (683)
..++.+.++.+...+.|. +.+++.-+.|||.+| +|||.+|.-...
T Consensus 254 ~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g-~Pvi~~~~~~~~ 301 (357)
T cd03795 254 DEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFG-KPVISTEIGTGG 301 (357)
T ss_pred HHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcC-CCEEecCCCCch
Confidence 355778999999998874 345666799999997 688888755443
No 122
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=21.74 E-value=97 Score=33.67 Aligned_cols=42 Identities=14% Similarity=0.037 Sum_probs=32.8
Q ss_pred chhHHHHhhcCceecccCC-CCCchhHHHHHhcCceeEEeeCCe
Q 005688 628 SENYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQCKF 670 (683)
Q Consensus 628 ~~~y~~~m~~S~FCL~p~G-d~~s~Rl~dAi~~GCIPViisD~~ 670 (683)
..+..+.|+.+...+.|.= .+++.-++|||.+|+ |||.++.-
T Consensus 293 ~~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~-Pvi~~~~~ 335 (405)
T TIGR03449 293 PEELVHVYRAADVVAVPSYNESFGLVAMEAQACGT-PVVAARVG 335 (405)
T ss_pred HHHHHHHHHhCCEEEECCCCCCcChHHHHHHHcCC-CEEEecCC
Confidence 3567789999998887753 255667999999995 99988743
No 123
>PHA01630 putative group 1 glycosyl transferase
Probab=21.69 E-value=1.1e+02 Score=32.81 Aligned_cols=49 Identities=10% Similarity=0.004 Sum_probs=35.5
Q ss_pred chhHHHHhhcCceecccCC-CCCchhHHHHHhcCceeEEeeCCeeeccccc
Q 005688 628 SENYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQCKFIFSTTLC 677 (683)
Q Consensus 628 ~~~y~~~m~~S~FCL~p~G-d~~s~Rl~dAi~~GCIPViisD~~~l~~~~~ 677 (683)
..+..+.|+.+...+.|.= .+++.=+.|||.+|+ |||.+|.-.+.+++.
T Consensus 200 ~~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~-PVIas~~gg~~E~i~ 249 (331)
T PHA01630 200 DDDIYSLFAGCDILFYPVRGGAFEIPVIEALALGL-DVVVTEKGAWSEWVL 249 (331)
T ss_pred HHHHHHHHHhCCEEEECCccccCChHHHHHHHcCC-CEEEeCCCCchhhcc
Confidence 3667789999999988765 356555999999996 777777544444443
No 124
>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=20.77 E-value=1e+02 Score=33.77 Aligned_cols=62 Identities=26% Similarity=0.212 Sum_probs=35.5
Q ss_pred EEecCChhhhHHHhhccccccccccccccCcCccccccccchhHHHHHHHHhcCCC-ccCCcCCCceEEEec
Q 005688 354 YVYDLPPEFNSLLLEGRHYKLECVNRIYNEKNETLWTDMLYGSQMAFYESILASPH-RTLNGEEADFFFVPV 424 (683)
Q Consensus 354 YvYdLP~~fn~~ll~~~~~~~~c~~~~~~~~~~~~w~~~~y~~E~~~~e~L~~s~~-rT~dP~eAdlFyVP~ 424 (683)
.|-|.|+-.|++-|.++.-+.... .|.- ..+.-..| +.+.-|.+|+| |+.+|++||++++-.
T Consensus 55 ~v~~~~~yL~~~dl~g~gRkv~~e--tYGC------QMNvnD~E-iv~sIl~~~Gy~~~~~~e~Advill~T 117 (552)
T KOG2492|consen 55 EVEDPPPYLNSDDLLGNGRKVYLE--TYGC------QMNVNDTE-IVWSILKKSGYLRSDKPEEADVILLVT 117 (552)
T ss_pred cccCCccccCHHHhccCCcEEEEE--Eeee------eeccchHH-HHHHHHHhcCccccCCcccCcEEEEEE
Confidence 577888888886666543322100 0100 00011123 34445667876 888999999999875
No 125
>PHA01633 putative glycosyl transferase group 1
Probab=20.60 E-value=1.1e+02 Score=32.86 Aligned_cols=43 Identities=23% Similarity=0.238 Sum_probs=33.7
Q ss_pred hhHHHHhhcCceecccCC-CCCchhHHHHHhcCceeEEeeCCeee
Q 005688 629 ENYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQCKFIF 672 (683)
Q Consensus 629 ~~y~~~m~~S~FCL~p~G-d~~s~Rl~dAi~~GCIPViisD~~~l 672 (683)
.+..+.++.|.+-+.|.- .+++.=+.|||.+|+ |||.+|--.+
T Consensus 215 ~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~-PVVas~~~~l 258 (335)
T PHA01633 215 EYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGT-PVIHQLMPPL 258 (335)
T ss_pred HHHHHHHHhCCEEEECCccccCCHHHHHHHHcCC-CEEEccCCCc
Confidence 556788999998887754 356666999999999 9999865444
No 126
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=20.58 E-value=1e+02 Score=33.62 Aligned_cols=48 Identities=13% Similarity=-0.044 Sum_probs=35.6
Q ss_pred chhHHHHhhcCceecccCC-CCCchhHHHHHhcCceeEEeeCCeeecccc
Q 005688 628 SENYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQCKFIFSTTL 676 (683)
Q Consensus 628 ~~~y~~~m~~S~FCL~p~G-d~~s~Rl~dAi~~GCIPViisD~~~l~~~~ 676 (683)
..++.+.|+.+...+.|.- .+++.-+.|||.+|+ |||.+|.-.+.+++
T Consensus 260 ~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~-PVI~s~~gg~~e~i 308 (398)
T cd03796 260 HERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGL-LVVSTRVGGIPEVL 308 (398)
T ss_pred HHHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCC-CEEECCCCCchhhe
Confidence 4678899999999888764 366667999999997 67777654444444
No 127
>PLN02949 transferase, transferring glycosyl groups
Probab=20.16 E-value=1.2e+02 Score=34.30 Aligned_cols=40 Identities=10% Similarity=0.072 Sum_probs=30.7
Q ss_pred hhHHHHhhcCceecccCC-CCCchhHHHHHhcCceeEEeeC
Q 005688 629 ENYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQC 668 (683)
Q Consensus 629 ~~y~~~m~~S~FCL~p~G-d~~s~Rl~dAi~~GCIPViisD 668 (683)
.+..+.|++|.+.+.|+- .+++.=+.|||.+|++||.-..
T Consensus 346 ~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~ 386 (463)
T PLN02949 346 RDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNS 386 (463)
T ss_pred HHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCC
Confidence 566788999998887664 3667779999999977666543
No 128
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=20.05 E-value=1.1e+02 Score=31.90 Aligned_cols=50 Identities=10% Similarity=0.032 Sum_probs=37.7
Q ss_pred chhHHHHhhcCceecccCC-CCCchhHHHHHhcCceeEEeeCCeeecccccC
Q 005688 628 SENYHEDLSSSVFCGVLPG-DGWSGRMEDSILQGCIPVVIQCKFIFSTTLCP 678 (683)
Q Consensus 628 ~~~y~~~m~~S~FCL~p~G-d~~s~Rl~dAi~~GCIPViisD~~~l~~~~~~ 678 (683)
..++.+.|+.|.+-+.|.. ++.+..++|||.+|+ |||.+|.-.+..++..
T Consensus 269 ~~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~-PvI~~~~~~~~~~i~~ 319 (374)
T cd03817 269 REELPDYYKAADLFVFASTTETQGLVLLEAMAAGL-PVVAVDAPGLPDLVAD 319 (374)
T ss_pred hHHHHHHHHHcCEEEecccccCcChHHHHHHHcCC-cEEEeCCCChhhheec
Confidence 3667899999999998876 456777999999975 7777776655554443
Done!