BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005690
(683 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D3A|A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides
Thetaiotaomicron
Length = 612
Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 102/297 (34%), Positives = 149/297 (50%), Gaps = 26/297 (8%)
Query: 14 QMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 73
+ W I+ K G + I YVFWN HEP +G Y F + D+ F +L Q+ G YV +R
Sbjct: 37 EYWEHRIKXCKALGXNTICLYVFWNFHEPEEGRYDFAGQKDIAAFCRLAQENGXYVIVRP 96
Query: 74 GPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPI 133
GPYVCAEW GG P WL I+ R + + + F ++ + ++ ++GG I
Sbjct: 97 GPYVCAEWEXGGLPWWLLKKKDIKLREQDPYYXERVKLFLNEVGKQLADLQI--SKGGNI 154
Query: 134 ILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCK-----QDDAPDPVINT 188
I Q+ENE+G + I P + + + A G TGVP C +++A D ++ T
Sbjct: 155 IXVQVENEYGA--FGIDKPYISEIRDXVKQA-GF-TGVPLFQCDWNSNFENNALDDLLWT 210
Query: 189 CN----GFYCEKFVPNQNYKPKM---WTEAWTGWFTEFGSAVPTRPAEDLVFSVARFIQS 241
N E+F + +P +E W+GWF +G+ TR AE+LV +
Sbjct: 211 INFGTGANIDEQFKRLKELRPDTPLXCSEFWSGWFDHWGAKHETRSAEELVKGXKEXLDR 270
Query: 242 GGSFINYYMYHGGTNFGRTSGGF------VATSYDYDAPIDEYGLLNEPKWGHLRDL 292
SF + Y HGGT+FG G TSYDYDAPI+E G + PK+ +R+L
Sbjct: 271 NISF-SLYXTHGGTSFGHWGGANFPNFSPTCTSYDYDAPINESGKVT-PKYLEVRNL 325
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 91/227 (40%), Gaps = 49/227 (21%)
Query: 446 QDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRP--GVNKISLLSTSVG 503
++ L I A QVF+NG+ T+ +L VKL P +++ +L + G
Sbjct: 396 KEQTLLITEAHDWAQVFLNGKKLATL------SRLKGEGVVKLPPLKEGDRLDILVEAXG 449
Query: 504 LPNVGTHFEKWNAGVLGPVTLKGLNEGTRDISKQKWTYKIGLKGEALSLHTVSGSSSVEW 563
N G W G+ V L+ ++ ++ K Y I + S + ++
Sbjct: 450 RXNFGKGIYDWK-GITEKVELQ--SDKGVELVKDWQVYTIPVD--------YSFARDKQY 498
Query: 564 AQGASLAQKQPMTWYKTTFNVPPGNDPLALDMGAMGKGMVWINGQSIGRHWPXXXXXXXX 623
Q + A+ QP +Y++TFN+ D L+ KG VW+NG +IGR+W
Sbjct: 499 KQQEN-AENQP-AYYRSTFNLNELGDTF-LNXXNWSKGXVWVNGHAIGRYWEIG------ 549
Query: 624 XXXXXXXTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWG 670
P Q Y VP WLK N +++ + G
Sbjct: 550 --------------------PQQTLY-VPGCWLKKGENEIIILDXAG 575
>pdb|3THC|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THD|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
Length = 654
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 146/298 (48%), Gaps = 30/298 (10%)
Query: 16 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 75
W D + K K GL+ IQTYV WN HEP G Y F + +D+ F++L + GL V LR GP
Sbjct: 42 WKDRLLKMKMAGLNAIQTYVPWNFHEPWPGQYQFSEDHDVEYFLRLAHELGLLVILRPGP 101
Query: 76 YVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIIL 135
Y+CAEW GG P WL I R+ + + AA+ K+ ++ MK L GGP+I
Sbjct: 102 YICAEWEMGGLPAWLLEKESILLRSSDPDYLAAVDKWLGVLLPKMKP--LLYQNGGPVIT 159
Query: 136 SQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQDDAPDPVIN--TCNGFY 193
Q+ENE+G A Y ++ Q + G V+ D A + G Y
Sbjct: 160 VQVENEYG----SYFACDFDYLRF-LQKRFRHHLGDDVVLFTTDGAHKTFLKCGALQGLY 214
Query: 194 -----------CEKFVPNQNYKPK---MWTEAWTGWFTEFGSAVPTRPAEDLVFSVARFI 239
+ F+ + +PK + +E +TGW +G T E + S+ +
Sbjct: 215 TTVDFGTGSNITDAFLSQRKCEPKGPLINSEFYTGWLDHWGQPHSTIKTEAVASSLYDIL 274
Query: 240 QSGGSFINYYMYHGGTNFGRTSGG---FVA--TSYDYDAPIDEYGLLNEPKWGHLRDL 292
G S +N YM+ GGTNF +G + A TSYDYDAP+ E G L E K+ LR++
Sbjct: 275 ARGAS-VNLYMFIGGTNFAYWNGANSPYAAQPTSYDYDAPLSEAGDLTE-KYFALRNI 330
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 553 HTVSGSSSVEWAQGASLAQKQPMTWYKTTFNVPPGNDPLALDMGAM----GKGMVWINGQ 608
H SG WA +S +Y F++P G L D KG VWING
Sbjct: 506 HRDSGHHDEAWAHNSS--NYTLPAFYMGNFSIPSGIPDLPQDTFIQFPGWTKGQVWINGF 563
Query: 609 SIGRHWP 615
++GR+WP
Sbjct: 564 NLGRYWP 570
>pdb|4E8C|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8C|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8D|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase
pdb|4E8D|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase
Length = 595
Score = 129 bits (324), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 86/301 (28%), Positives = 134/301 (44%), Gaps = 42/301 (13%)
Query: 8 FFFIWLQMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGL 67
+F + + W + K G + ++TYV WN HEP +G ++F+ DL +F+++ Q GL
Sbjct: 26 YFRVPPEDWYHSLYNLKALGFNTVETYVAWNLHEPCEGEFHFEGDLDLEKFLQIAQDLGL 85
Query: 68 YVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQ 127
Y +R P++CAEW +GG P WL + R+ + + A+ ++ ++++ +
Sbjct: 86 YAIVRPSPFICAEWEFGGLPAWL-LTKNMRIRSSDPAYIEAVGRYYDQLLPRLVPRL--L 142
Query: 128 TQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQDDAPDPVIN 187
GG I++ Q+ENE+G D KAY + Q+ P D P
Sbjct: 143 DNGGNILMMQVENEYGSYGED-----KAYLRAIRQLMEECGVTCPLFTS---DGPWRATL 194
Query: 188 TCNGFYCEKFVPNQNYK---------------------PKMWTEAWTGWFTEFGSAVPTR 226
E N+ P M E W GWF + + TR
Sbjct: 195 KAGTLIEEDLFVTGNFGSKAPYNFSQMQEFFDEHGKKWPLMCMEFWDGWFNRWKEPIITR 254
Query: 227 PAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGGFV--------ATSYDYDAPIDEY 278
++L +V ++ G IN YM+HGGTNFG +G TSYDYDA +DE
Sbjct: 255 DPKELADAVREVLEQGS--INLYMFHGGTNFGFMNGCSARGTLDLPQVTSYDYDALLDEE 312
Query: 279 G 279
G
Sbjct: 313 G 313
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 104/259 (40%), Gaps = 58/259 (22%)
Query: 426 YLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKN 485
YL Y T+ N D+ E L+ I Q++++GQ T Y + + +
Sbjct: 385 YLLYRTETNWDAEEERLR--------IIDGRDRAQLYVDGQWVKTQYQTEIGEDIFYQGK 436
Query: 486 VKLRPGVNKISLLSTSVGLPNVGTHFEKWNAGVLGPVTLKGLNEGT-RDISKQKWTYKIG 544
K G++++ +L ++G N G F L KG+ G +D+ + +
Sbjct: 437 KK---GLSRLDILIENMGRVNYGHKF-------LADTQRKGIRTGVCKDLH-----FLLN 481
Query: 545 LKGEALSLHTVSGSSSVEWAQGASLAQKQPMTWYKTTFNVPPGNDPLALDMGAMGKGMVW 604
K L L +++++G + Q QP +Y F V D LD+ GKG+ +
Sbjct: 482 WKHYPLPL---DNPEKIDFSKGWT--QGQP-AFYAYDFTVEEPKDTY-LDLSEFGKGVAF 534
Query: 605 INGQSIGRHWPXXXXXXXXXXXXXXXTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLV 664
+NGQ++GR W P+ Y +P S+LK N ++
Sbjct: 535 VNGQNLGRFWNVG--------------------------PTLSLY-IPHSYLKEGANRII 567
Query: 665 VFEEWGGEPHWISLLKRTT 683
+FE G I L ++ T
Sbjct: 568 IFETEGQYKEEIHLTRKPT 586
>pdb|1TG7|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp.
pdb|1XC6|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp. In Complex With Galactose
Length = 971
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 93/328 (28%), Positives = 137/328 (41%), Gaps = 42/328 (12%)
Query: 15 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 74
++ D+ +K K G + + YV W E G+Y + +DL F ++AG+Y+ R G
Sbjct: 37 LYIDIFEKVKALGFNCVSFYVDWALLEGNPGHYSAEGIFDLQPFFDAAKEAGIYLLARPG 96
Query: 75 PYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPII 134
PY+ AE + GGFP WL+ V GI RT + + A + I + + ++ T GGPII
Sbjct: 97 PYINAEVSGGGFPGWLQRVDGI-LRTSDEAYLKATDNYASNIAATIAKAQI--TNGGPII 153
Query: 135 LSQIENEF-GPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVM----CKQDDAPDPVINTC 189
L Q ENE+ G G P +Y ++ A VP++ +AP
Sbjct: 154 LYQPENEYSGACCGYNGFPDGSYMQYIEDHARDAGIVVPFISNDAWAAGHNAPGTGAGAV 213
Query: 190 N---------GFYCEKFV--PNQNY--------------KPKMWTEAWTGWFTEFGSAVP 224
+ GF C P+ N P E G F +G
Sbjct: 214 DIYGHDSYPLGFDCANPSTWPSGNLPTYFHTSHEQQSPSTPYSLVEFQGGAFDPWGGVGF 273
Query: 225 TRPAEDLVFSVARFIQS-----GGSFINYYMYHGGTNFGRTS--GGFVATSYDYDAPIDE 277
+ A L R G +F+N YM GGTN+G GG+ TSYDY + I E
Sbjct: 274 AKCAALLNHEFERVFYKNDFSFGVAFLNLYMIFGGTNWGNLGHPGGY--TSYDYGSAISE 331
Query: 278 YGLLNEPKWGHLRDLHKAIKLCEPALVS 305
+ K+ L+ L K+ LV+
Sbjct: 332 SRNITREKYSELKLLGNFAKVSPGYLVA 359
>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
Beta-Galactosidase
pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Galactose
pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Iptg
pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Petg
Length = 1003
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 90/339 (26%), Positives = 137/339 (40%), Gaps = 46/339 (13%)
Query: 14 QMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 73
++ D+ K K G + + YV W E G + + L F + +AG+Y+ R
Sbjct: 56 SLYLDVFHKIKALGFNTVSFYVDWALLEGKPGRFRADGIFSLEPFFEAATKAGIYLLARP 115
Query: 74 GPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPI 133
GPY+ AE + GGFP WL+ V G + RTD + A + I S++ ++ T GGP+
Sbjct: 116 GPYINAEVSGGGFPGWLQRVKG-KLRTDAPDYLHATDNYVAHIASIIAKAQI--TNGGPV 172
Query: 134 ILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWV------------------- 174
IL Q ENE+ + P K Y ++ A VP +
Sbjct: 173 ILYQPENEYSGAAEGVLFPNKPYMQYVIDQARNAGIIVPLINNDAFPGGTGAPGTGLGSV 232
Query: 175 -MCKQD------DAPDPVINTCNGFYCEKFVPNQNYKPKM---WTEAWTGWFTEFG---- 220
+ D D P NG + N P E G F FG
Sbjct: 233 DIYGHDGYPLGFDCAHPSAWPDNGLPTTWRQDHLNISPSTPFSLVEFQGGAFDPFGGWGF 292
Query: 221 ---SAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTS--GGFVATSYDYDAPI 275
SA+ E + + + +G + N YM GGTN+G GG+ TSYDY A I
Sbjct: 293 EQCSALVNHEFERVFYK--NNMAAGVTIFNIYMTFGGTNWGNLGHPGGY--TSYDYGASI 348
Query: 276 DEYGLLNEPKWGHLRDLHKAIKLCEPALVSVDPTVKSLG 314
E ++ K+ L+ + +K+ P ++ P + G
Sbjct: 349 REDRRIDREKYSELKLQGQFLKVS-PGYITATPENATQG 386
>pdb|2WCD|A Chain A, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|B Chain B, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|C Chain C, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|D Chain D, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|E Chain E, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|F Chain F, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|G Chain G, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|H Chain H, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|I Chain I, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|J Chain J, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|K Chain K, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|L Chain L, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|M Chain M, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|N Chain N, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|O Chain O, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|P Chain P, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|Q Chain Q, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|R Chain R, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|S Chain S, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|T Chain T, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|U Chain U, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|V Chain V, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|W Chain W, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|X Chain X, Crystal Structure Of The Assembled Cytolysin A Pore
Length = 309
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 276 DEYGLLNEPKWGHLRDLHKAIKLCEPALVSVDPTVKSLGKNQEAHVFNSKSGKCAAFLAN 335
DEY NE K +D+ IK+ + + ++ KSL + ++ FN+ SGK A +
Sbjct: 108 DEY---NEKKASAQKDI--LIKVLDDGITKLNEAQKSLLVSSQS--FNNASGKLLALDSQ 160
Query: 336 YDTTFSAKVSFGNAQYD 352
FS K S+ +Q D
Sbjct: 161 LTNDFSEKSSYFQSQVD 177
>pdb|1QOY|A Chain A, E.Coli Hemolysin E (Hlye, Clya, Shea)
Length = 318
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 276 DEYGLLNEPKWGHLRDLHKAIKLCEPALVSVDPTVKSLGKNQEAHVFNSKSGKCAAFLAN 335
DEY NE K +D+ IK+ + + ++ KSL + ++ FN+ SGK A +
Sbjct: 117 DEY---NEKKASAQKDI--LIKVLDDGITKLNEAQKSLLVSSQS--FNNASGKLLALDSQ 169
Query: 336 YDTTFSAKVSFGNAQYD 352
FS K S+ +Q D
Sbjct: 170 LTNDFSEKSSYFQSQVD 186
>pdb|3U43|A Chain A, Crystal Structure Of The Colicin E2 Dnase-Im2 Complex
Length = 94
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 398 ETASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGH 457
E A+ DDN ++ +E++ D SD ++Y D DS EG +K ++ W A +
Sbjct: 26 EGATEEDDNKLVRE--FERLTEHPDGSDLIYYPRDDREDSPEGIVKEIKE-----WRAAN 78
Query: 458 ALQVFING 465
F G
Sbjct: 79 GKSGFKQG 86
>pdb|2WPT|A Chain A, The Crystal Structure Of Im2 In Complex With Colicin E9
Dnase
Length = 86
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 398 ETASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGH 457
E A+ DDN ++ +E++ D SD ++Y D DS EG +K ++ W A +
Sbjct: 26 EGATECDDNKLVRE--FERLTEHPDGSDLIYYPRDDREDSPEGIVKEIKE-----WRAAN 78
Query: 458 ALQVFING 465
F G
Sbjct: 79 GKSGFKQG 86
>pdb|2NO8|A Chain A, Nmr Structure Analysis Of The Colicin Immuntiy Protein Im2
Length = 86
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 398 ETASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGH 457
E A+ DDN ++ +E++ D SD ++Y D DS EG +K ++ W A +
Sbjct: 26 EGATEEDDNKLVRE--FERLTEHPDGSDLIYYPRDDREDSPEGIVKEIKE-----WRAAN 78
Query: 458 ALQVFING 465
F G
Sbjct: 79 GKSGFKQG 86
>pdb|1ULI|A Chain A, Biphenyl Dioxygenase (bpha1a2) Derived From Rhodococcus
Sp. Strain Rha1
pdb|1ULI|C Chain C, Biphenyl Dioxygenase (bpha1a2) Derived From Rhodococcus
Sp. Strain Rha1
pdb|1ULI|E Chain E, Biphenyl Dioxygenase (bpha1a2) Derived From Rhodococcus
Sp. Strain Rha1
pdb|1ULJ|A Chain A, Biphenyl Dioxygenase (Bpha1a2) In Complex With The
Substrate
pdb|1ULJ|C Chain C, Biphenyl Dioxygenase (Bpha1a2) In Complex With The
Substrate
pdb|1ULJ|E Chain E, Biphenyl Dioxygenase (Bpha1a2) In Complex With The
Substrate
Length = 460
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 396 IEETASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNEGFLKN--GQDPLLTIW 453
++E D +T + L+EQ +L + I F+ N G+DP++ +
Sbjct: 26 VDERTGRLDPRIYTDEALYEQELERIFGRSWLLMGHETQIPKAGDFMTNYMGEDPVMVVR 85
Query: 454 SAGHALQVFIN 464
++VF+N
Sbjct: 86 QKNGEIRVFLN 96
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 13/86 (15%)
Query: 389 AFSWQSYIE------ETASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNEGFL 442
+F W Y+E ST NTFT GL YL+ + T + +NE F+
Sbjct: 324 SFQWLKYLEYLNMDDNNIPSTKSNTFT--GLVSLKYLSLSKT-----FTSLQTLTNETFV 376
Query: 443 KNGQDPLLTIWSAGHALQVFINGQLS 468
PLLT+ + + NG S
Sbjct: 377 SLAHSPLLTLNLTKNHISKIANGTFS 402
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,219,881
Number of Sequences: 62578
Number of extensions: 1042567
Number of successful extensions: 2268
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2222
Number of HSP's gapped (non-prelim): 52
length of query: 683
length of database: 14,973,337
effective HSP length: 105
effective length of query: 578
effective length of database: 8,402,647
effective search space: 4856729966
effective search space used: 4856729966
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)