Query 005690
Match_columns 683
No_of_seqs 233 out of 1530
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 12:16:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005690.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005690hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 3E-185 7E-190 1576.2 60.5 679 1-683 48-728 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 2E-147 4E-152 1220.8 40.6 598 2-683 39-639 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 2.3E-86 5E-91 707.7 16.7 284 1-295 13-318 (319)
4 COG1874 LacA Beta-galactosidas 100.0 6.2E-34 1.3E-38 324.4 11.7 267 6-281 22-332 (673)
5 PF02449 Glyco_hydro_42: Beta- 99.8 8.8E-21 1.9E-25 207.6 14.5 257 12-298 8-373 (374)
6 PF13364 BetaGal_dom4_5: Beta- 99.0 5.9E-10 1.3E-14 102.1 6.5 72 572-670 33-109 (111)
7 PF13364 BetaGal_dom4_5: Beta- 98.7 8.3E-08 1.8E-12 87.9 9.1 84 414-504 24-110 (111)
8 PF00150 Cellulase: Cellulase 98.5 1E-06 2.2E-11 91.7 12.2 141 15-175 22-170 (281)
9 PF02836 Glyco_hydro_2_C: Glyc 98.2 1.6E-05 3.4E-10 84.7 13.7 166 10-217 32-212 (298)
10 PF02837 Glyco_hydro_2_N: Glyc 98.1 1.3E-05 2.8E-10 77.8 10.3 99 421-525 64-164 (167)
11 PRK10150 beta-D-glucuronidase; 98.0 0.0003 6.5E-09 82.4 20.1 131 11-176 310-448 (604)
12 smart00633 Glyco_10 Glycosyl h 98.0 1.8E-05 3.9E-10 82.6 8.5 117 37-178 3-126 (254)
13 TIGR03356 BGL beta-galactosida 97.6 5.8E-05 1.3E-09 84.7 5.1 97 14-122 54-151 (427)
14 PRK10340 ebgA cryptic beta-D-g 97.5 0.00071 1.5E-08 83.6 13.6 158 11-211 352-513 (1021)
15 PLN02161 beta-amylase 97.5 0.00033 7.1E-09 78.4 9.0 117 13-138 116-262 (531)
16 PRK09525 lacZ beta-D-galactosi 97.4 0.0015 3.3E-08 80.7 14.3 122 10-176 367-488 (1027)
17 PLN00197 beta-amylase; Provisi 97.4 0.00057 1.2E-08 77.1 9.3 115 13-138 126-272 (573)
18 PLN02803 beta-amylase 97.4 0.00081 1.8E-08 75.7 9.9 115 13-138 106-252 (548)
19 PLN02705 beta-amylase 97.3 0.00051 1.1E-08 78.0 8.3 116 13-138 267-414 (681)
20 PLN02801 beta-amylase 97.3 0.00055 1.2E-08 76.6 8.4 146 13-168 36-229 (517)
21 PF01373 Glyco_hydro_14: Glyco 97.3 0.00034 7.5E-09 76.8 5.8 114 15-138 17-152 (402)
22 PLN02905 beta-amylase 97.2 0.00087 1.9E-08 76.4 8.7 116 13-138 285-432 (702)
23 COG3693 XynA Beta-1,4-xylanase 97.1 0.002 4.4E-08 68.5 9.4 129 28-179 58-195 (345)
24 PF03198 Glyco_hydro_72: Gluca 97.0 0.004 8.8E-08 66.5 10.6 123 9-169 48-174 (314)
25 COG3250 LacZ Beta-galactosidas 97.0 0.0063 1.4E-07 73.1 13.1 103 14-163 321-423 (808)
26 PF13204 DUF4038: Protein of u 96.5 0.069 1.5E-06 57.1 15.2 204 10-243 26-274 (289)
27 PRK10150 beta-D-glucuronidase; 96.4 0.015 3.1E-07 68.4 10.5 100 422-527 62-179 (604)
28 PF02837 Glyco_hydro_2_N: Glyc 96.3 0.0053 1.2E-07 59.4 5.0 66 573-666 67-136 (167)
29 PF00232 Glyco_hydro_1: Glycos 96.3 0.0013 2.9E-08 74.4 0.8 97 14-122 58-156 (455)
30 COG2730 BglC Endoglucanase [Ca 96.1 0.015 3.3E-07 65.0 8.4 114 17-144 76-193 (407)
31 PF07745 Glyco_hydro_53: Glyco 96.1 0.015 3.2E-07 63.3 7.8 104 17-143 27-136 (332)
32 PF00331 Glyco_hydro_10: Glyco 96.1 0.008 1.7E-07 65.1 5.4 144 19-179 26-180 (320)
33 PF14488 DUF4434: Domain of un 96.0 0.09 1.9E-06 51.7 12.1 135 10-175 16-159 (166)
34 PLN02998 beta-glucosidase 96.0 0.0064 1.4E-07 69.6 4.5 100 14-121 82-183 (497)
35 PRK09852 cryptic 6-phospho-bet 96.0 0.006 1.3E-07 69.5 4.1 96 14-121 71-169 (474)
36 PLN02814 beta-glucosidase 95.9 0.0069 1.5E-07 69.5 4.4 100 14-121 77-178 (504)
37 PRK10340 ebgA cryptic beta-D-g 95.8 0.033 7.2E-07 69.2 9.8 97 425-527 109-206 (1021)
38 PRK15014 6-phospho-beta-glucos 95.8 0.011 2.4E-07 67.4 5.2 95 15-121 70-167 (477)
39 PRK13511 6-phospho-beta-galact 95.6 0.011 2.3E-07 67.4 4.3 97 14-118 54-151 (469)
40 PRK09593 arb 6-phospho-beta-gl 95.6 0.014 3E-07 66.7 5.2 100 14-121 73-175 (478)
41 TIGR01233 lacG 6-phospho-beta- 95.6 0.013 2.8E-07 66.8 4.8 103 14-128 53-156 (467)
42 PLN02849 beta-glucosidase 95.6 0.012 2.5E-07 67.6 4.5 100 14-121 79-180 (503)
43 PRK09589 celA 6-phospho-beta-g 95.5 0.015 3.2E-07 66.4 4.8 99 15-121 68-169 (476)
44 PRK09525 lacZ beta-D-galactosi 95.3 0.061 1.3E-06 66.9 9.8 98 424-527 119-218 (1027)
45 COG3867 Arabinogalactan endo-1 95.0 0.1 2.2E-06 55.2 8.7 120 14-151 63-191 (403)
46 PF14871 GHL6: Hypothetical gl 94.4 0.25 5.4E-06 46.8 9.0 98 18-120 4-123 (132)
47 PF02638 DUF187: Glycosyl hydr 93.9 0.21 4.6E-06 53.9 8.5 118 12-140 17-162 (311)
48 COG2723 BglB Beta-glucosidase/ 93.3 0.087 1.9E-06 59.3 4.4 96 14-121 59-157 (460)
49 TIGR01515 branching_enzym alph 92.0 2.2 4.9E-05 50.4 14.1 53 21-73 164-226 (613)
50 smart00642 Aamy Alpha-amylase 91.9 0.42 9.1E-06 46.9 6.7 60 16-75 21-92 (166)
51 TIGR00542 hxl6Piso_put hexulos 91.0 3.7 8E-05 43.2 13.2 132 12-171 14-149 (279)
52 PRK09936 hypothetical protein; 90.4 0.49 1.1E-05 50.3 5.7 57 10-72 34-91 (296)
53 PRK05402 glycogen branching en 89.5 5 0.00011 48.5 14.2 52 21-72 273-334 (726)
54 PLN02447 1,4-alpha-glucan-bran 88.9 0.9 2E-05 54.6 7.2 71 3-73 234-320 (758)
55 PRK14706 glycogen branching en 88.5 6.8 0.00015 46.6 14.1 53 21-73 175-237 (639)
56 PRK12568 glycogen branching en 86.5 13 0.00028 44.9 14.8 69 3-73 251-339 (730)
57 PRK01060 endonuclease IV; Prov 85.8 13 0.00028 38.9 13.1 96 14-137 12-109 (281)
58 PF14307 Glyco_tran_WbsX: Glyc 85.6 7.6 0.00016 42.6 11.6 139 11-178 55-198 (345)
59 PRK09441 cytoplasmic alpha-amy 85.5 1.8 3.9E-05 49.5 6.9 61 13-73 18-101 (479)
60 COG1649 Uncharacterized protei 85.1 4.1 8.9E-05 45.8 9.2 123 12-143 62-210 (418)
61 PRK13210 putative L-xylulose 5 84.9 6 0.00013 41.4 10.1 132 14-171 16-149 (284)
62 smart00812 Alpha_L_fucos Alpha 84.4 75 0.0016 35.6 22.2 241 12-303 82-337 (384)
63 PRK14705 glycogen branching en 84.0 21 0.00045 45.6 15.5 54 19-72 771-834 (1224)
64 PRK12313 glycogen branching en 83.6 2.2 4.7E-05 50.7 6.7 53 20-72 177-239 (633)
65 PF00128 Alpha-amylase: Alpha 83.4 1.1 2.5E-05 46.6 3.8 57 17-73 7-72 (316)
66 PF13200 DUF4015: Putative gly 82.6 3.8 8.1E-05 44.6 7.4 110 13-123 12-136 (316)
67 TIGR02402 trehalose_TreZ malto 80.4 3.1 6.7E-05 48.5 6.2 56 18-73 115-180 (542)
68 PLN02960 alpha-amylase 80.0 4.2 9E-05 49.6 7.2 71 3-73 400-486 (897)
69 COG0296 GlgB 1,4-alpha-glucan 79.8 2.7 5.9E-05 49.5 5.5 68 3-72 149-233 (628)
70 PF01229 Glyco_hydro_39: Glyco 79.7 6.2 0.00014 45.3 8.4 61 12-75 37-106 (486)
71 cd00019 AP2Ec AP endonuclease 79.1 16 0.00035 38.2 10.7 54 14-71 10-64 (279)
72 TIGR03234 OH-pyruv-isom hydrox 78.0 39 0.00085 34.8 13.0 44 14-71 14-57 (254)
73 PRK13209 L-xylulose 5-phosphat 77.8 12 0.00027 39.1 9.4 126 14-171 21-154 (283)
74 TIGR02403 trehalose_treC alpha 77.3 3.7 8E-05 47.9 5.6 58 16-73 29-95 (543)
75 TIGR02631 xylA_Arthro xylose i 76.9 41 0.00088 37.6 13.5 90 13-121 31-125 (382)
76 PRK10785 maltodextrin glucosid 75.9 5.5 0.00012 47.0 6.6 57 17-73 182-246 (598)
77 PF01261 AP_endonuc_2: Xylose 75.8 3.5 7.5E-05 40.4 4.3 125 20-171 1-128 (213)
78 PRK09856 fructoselysine 3-epim 74.8 36 0.00077 35.4 11.8 130 14-171 13-145 (275)
79 TIGR02104 pulA_typeI pullulana 74.7 5.3 0.00011 47.2 6.1 55 18-73 168-249 (605)
80 PRK10933 trehalose-6-phosphate 73.8 6.6 0.00014 45.9 6.5 55 16-73 35-101 (551)
81 PRK09505 malS alpha-amylase; R 72.2 7.2 0.00016 46.8 6.4 58 16-73 232-312 (683)
82 PRK09997 hydroxypyruvate isome 71.4 60 0.0013 33.6 12.5 43 15-71 16-58 (258)
83 TIGR01531 glyc_debranch glycog 70.9 11 0.00024 48.1 7.8 91 14-110 132-237 (1464)
84 PF13199 Glyco_hydro_66: Glyco 70.6 8.8 0.00019 44.9 6.5 80 13-92 117-211 (559)
85 PF14683 CBM-like: Polysacchar 70.2 4.3 9.3E-05 40.0 3.3 63 597-670 91-153 (167)
86 TIGR02456 treS_nterm trehalose 68.9 7.2 0.00016 45.4 5.4 58 15-72 29-95 (539)
87 COG3934 Endo-beta-mannanase [C 68.6 6 0.00013 44.9 4.4 133 15-165 27-168 (587)
88 PLN02361 alpha-amylase 68.2 14 0.0003 41.5 7.3 56 18-73 33-96 (401)
89 cd04908 ACT_Bt0572_1 N-termina 64.6 25 0.00054 28.5 6.4 55 13-71 12-66 (66)
90 KOG0496 Beta-galactosidase [Ca 64.3 4 8.8E-05 47.8 2.1 35 264-298 324-359 (649)
91 PF11324 DUF3126: Protein of u 63.7 22 0.00048 29.5 5.7 31 454-484 25-57 (63)
92 PF02065 Melibiase: Melibiase; 62.9 88 0.0019 35.2 12.2 88 8-95 52-148 (394)
93 TIGR02401 trehalose_TreY malto 62.9 15 0.00033 44.8 6.6 60 14-73 16-85 (825)
94 PF01791 DeoC: DeoC/LacD famil 61.9 4.1 9E-05 42.0 1.5 53 17-72 79-131 (236)
95 PF06832 BiPBP_C: Penicillin-B 61.8 14 0.0003 32.1 4.6 49 449-505 35-84 (89)
96 PF08531 Bac_rhamnosid_N: Alph 61.3 47 0.001 32.7 8.8 56 448-504 6-68 (172)
97 PRK14582 pgaB outer membrane N 61.0 37 0.00081 40.7 9.3 111 14-142 334-468 (671)
98 PLN00196 alpha-amylase; Provis 60.7 26 0.00056 39.8 7.6 57 17-73 47-112 (428)
99 cd06593 GH31_xylosidase_YicI Y 60.0 25 0.00054 37.7 7.1 69 11-79 21-92 (308)
100 COG1306 Uncharacterized conser 59.6 17 0.00036 39.1 5.4 59 12-73 75-144 (400)
101 PF03659 Glyco_hydro_71: Glyco 59.4 29 0.00064 38.8 7.7 53 12-73 15-67 (386)
102 smart00518 AP2Ec AP endonuclea 58.9 65 0.0014 33.5 9.9 92 16-137 12-104 (273)
103 PRK14511 maltooligosyl trehalo 57.6 22 0.00047 43.8 6.7 62 14-75 20-91 (879)
104 TIGR02100 glgX_debranch glycog 57.6 16 0.00035 43.9 5.6 55 19-73 189-265 (688)
105 PRK14507 putative bifunctional 57.3 20 0.00044 47.0 6.7 57 14-73 758-827 (1693)
106 PRK14510 putative bifunctional 56.9 16 0.00036 46.7 5.8 56 18-73 191-267 (1221)
107 PRK12677 xylose isomerase; Pro 56.7 94 0.002 34.8 11.1 90 14-121 31-124 (384)
108 PF05913 DUF871: Bacterial pro 56.3 11 0.00025 41.6 3.8 62 12-79 12-73 (357)
109 PF08308 PEGA: PEGA domain; I 55.2 12 0.00026 30.8 3.0 39 449-497 3-41 (71)
110 PF02679 ComA: (2R)-phospho-3- 54.5 17 0.00038 38.0 4.6 52 13-74 83-134 (244)
111 cd06592 GH31_glucosidase_KIAA1 54.5 33 0.00071 36.9 6.9 68 9-79 25-96 (303)
112 cd06565 GH20_GcnA-like Glycosy 51.2 86 0.0019 33.7 9.4 59 12-73 15-80 (301)
113 TIGR02102 pullulan_Gpos pullul 50.8 26 0.00056 44.4 6.0 21 53-73 555-575 (1111)
114 PRK03705 glycogen debranching 50.0 27 0.00058 41.9 5.8 55 19-73 184-262 (658)
115 TIGR02455 TreS_stutzeri trehal 50.0 34 0.00073 40.8 6.4 76 12-91 76-176 (688)
116 PLN03059 beta-galactosidase; P 49.4 51 0.0011 40.4 7.9 70 573-670 469-548 (840)
117 PF02228 Gag_p19: Major core p 47.6 7.8 0.00017 33.3 0.6 36 13-65 21-56 (92)
118 cd06545 GH18_3CO4_chitinase Th 47.5 85 0.0018 32.6 8.5 114 23-168 18-132 (253)
119 PF04914 DltD_C: DltD C-termin 47.3 39 0.00084 32.0 5.3 52 53-123 36-88 (130)
120 KOG0626 Beta-glucosidase, lact 46.7 31 0.00068 39.8 5.4 113 15-137 92-208 (524)
121 KOG4039 Serine/threonine kinas 45.3 20 0.00042 36.1 3.0 66 8-78 103-171 (238)
122 cd06589 GH31 The enzymes of gl 44.9 75 0.0016 33.3 7.7 65 12-77 22-90 (265)
123 smart00481 POLIIIAc DNA polyme 41.9 1E+02 0.0022 24.9 6.4 56 3-71 1-59 (67)
124 TIGR03849 arch_ComA phosphosul 41.6 50 0.0011 34.5 5.5 52 14-75 71-122 (237)
125 PF08531 Bac_rhamnosid_N: Alph 40.7 23 0.00051 34.8 2.9 53 592-666 7-62 (172)
126 COG3589 Uncharacterized conser 40.4 45 0.00098 36.5 5.1 73 1-80 1-76 (360)
127 PRK09989 hypothetical protein; 39.4 58 0.0013 33.7 5.8 43 15-71 16-58 (258)
128 PF14587 Glyco_hydr_30_2: O-Gl 39.3 1.7E+02 0.0036 32.9 9.4 140 24-178 57-227 (384)
129 cd06591 GH31_xylosidase_XylS X 38.5 71 0.0015 34.6 6.4 66 12-78 22-91 (319)
130 COG1891 Uncharacterized protei 38.2 11 0.00023 37.5 0.1 27 46-72 160-186 (235)
131 cd06598 GH31_transferase_CtsZ 37.8 70 0.0015 34.6 6.2 67 12-78 22-95 (317)
132 PF02055 Glyco_hydro_30: O-Gly 37.6 2E+02 0.0043 33.4 10.1 247 24-297 110-424 (496)
133 COG0366 AmyA Glycosidases [Car 37.0 56 0.0012 36.9 5.6 55 18-72 33-96 (505)
134 KOG2230 Predicted beta-mannosi 36.7 2.5E+02 0.0054 33.1 10.3 125 14-178 357-494 (867)
135 cd06601 GH31_lyase_GLase GLase 36.1 1.6E+02 0.0034 32.3 8.7 66 12-78 22-89 (332)
136 COG3320 Putative dehydrogenase 35.9 23 0.00049 39.4 2.1 36 56-92 176-214 (382)
137 PF01261 AP_endonuc_2: Xylose 35.9 37 0.00079 33.1 3.4 63 13-76 70-135 (213)
138 PRK10076 pyruvate formate lyas 35.6 1.5E+02 0.0033 30.3 8.0 127 13-171 53-209 (213)
139 PF14701 hDGE_amylase: glucano 35.2 1.3E+02 0.0028 34.2 7.9 93 12-110 20-129 (423)
140 PF01055 Glyco_hydro_31: Glyco 35.0 69 0.0015 36.0 5.9 70 12-82 41-112 (441)
141 PLN02784 alpha-amylase 34.8 83 0.0018 38.8 6.7 57 17-73 524-588 (894)
142 PF07691 PA14: PA14 domain; I 34.7 2E+02 0.0043 26.4 8.1 71 426-504 47-123 (145)
143 TIGR00433 bioB biotin syntheta 34.4 60 0.0013 34.3 5.0 51 17-71 123-176 (296)
144 KOG0805 Carbon-nitrogen hydrol 34.2 1E+02 0.0022 32.5 6.2 53 54-114 38-90 (337)
145 cd08560 GDPD_EcGlpQ_like_1 Gly 33.8 1.1E+02 0.0025 33.8 7.2 53 15-73 246-298 (356)
146 TIGR00677 fadh2_euk methylenet 32.4 75 0.0016 33.9 5.3 89 19-121 153-250 (281)
147 cd06599 GH31_glycosidase_Aec37 32.0 1.1E+02 0.0025 33.0 6.7 66 13-78 28-98 (317)
148 PLN02877 alpha-amylase/limit d 31.8 85 0.0018 39.3 6.2 21 53-73 466-486 (970)
149 cd06602 GH31_MGAM_SI_GAA This 31.8 87 0.0019 34.3 5.8 68 12-80 22-93 (339)
150 cd02742 GH20_hexosaminidase Be 31.5 1.6E+02 0.0034 31.7 7.6 59 11-72 13-91 (303)
151 cd06418 GH25_BacA-like BacA is 31.4 2E+02 0.0043 29.5 8.0 90 12-123 50-140 (212)
152 COG1735 Php Predicted metal-de 30.7 2.4E+02 0.0051 30.8 8.5 121 18-178 52-173 (316)
153 cd06603 GH31_GANC_GANAB_alpha 30.4 1E+02 0.0022 33.6 6.1 68 12-80 22-91 (339)
154 KOG3833 Uncharacterized conser 30.4 52 0.0011 35.8 3.6 54 14-73 443-499 (505)
155 cd01299 Met_dep_hydrolase_A Me 28.5 1.1E+02 0.0024 32.8 5.9 61 12-73 118-180 (342)
156 COG2108 Uncharacterized conser 28.3 91 0.002 34.1 5.0 61 3-72 110-170 (353)
157 TIGR00587 nfo apurinic endonuc 28.2 7.1E+02 0.015 26.1 12.4 83 17-121 14-98 (274)
158 cd06563 GH20_chitobiase-like T 28.0 2.1E+02 0.0045 31.5 8.0 58 12-72 16-105 (357)
159 cd06600 GH31_MGAM-like This fa 28.0 1.1E+02 0.0023 33.2 5.6 66 12-78 22-89 (317)
160 TIGR02103 pullul_strch alpha-1 27.0 1.1E+02 0.0024 38.0 6.1 21 53-73 404-424 (898)
161 COG1523 PulA Type II secretory 26.9 93 0.002 37.6 5.3 54 20-73 206-285 (697)
162 PRK09856 fructoselysine 3-epim 26.6 79 0.0017 32.8 4.2 55 15-73 91-149 (275)
163 PRK13398 3-deoxy-7-phosphohept 26.1 1.2E+02 0.0026 32.2 5.5 57 13-73 40-98 (266)
164 cd06597 GH31_transferase_CtsY 26.0 1.4E+02 0.0031 32.6 6.3 66 13-78 23-110 (340)
165 KOG0470 1,4-alpha-glucan branc 26.0 69 0.0015 38.5 3.9 57 17-73 258-331 (757)
166 PF10566 Glyco_hydro_97: Glyco 25.8 2.4E+02 0.0051 30.2 7.6 115 13-133 31-159 (273)
167 cd06416 GH25_Lys1-like Lys-1 i 25.6 1.4E+02 0.0031 29.6 5.8 90 2-94 56-158 (196)
168 PLN02389 biotin synthase 25.2 90 0.002 34.9 4.5 50 17-69 178-229 (379)
169 PRK09875 putative hydrolase; P 25.2 4E+02 0.0087 28.7 9.3 60 16-92 36-95 (292)
170 PF00728 Glyco_hydro_20: Glyco 25.1 1.1E+02 0.0024 33.1 5.2 58 12-72 16-92 (351)
171 PRK05265 pyridoxine 5'-phospha 24.9 78 0.0017 33.1 3.7 48 14-79 113-161 (239)
172 TIGR03700 mena_SCO4494 putativ 24.6 56 0.0012 35.9 2.8 53 14-69 147-204 (351)
173 PF13380 CoA_binding_2: CoA bi 24.6 1.2E+02 0.0027 27.7 4.6 45 10-70 62-106 (116)
174 PRK00042 tpiA triosephosphate 24.5 1.2E+02 0.0026 32.0 5.0 49 20-74 79-127 (250)
175 cd06604 GH31_glucosidase_II_Ma 23.7 1.5E+02 0.0033 32.3 5.9 67 12-79 22-90 (339)
176 KOG2024 Beta-Glucuronidase GUS 23.2 1E+02 0.0022 32.8 4.1 52 421-473 84-135 (297)
177 cd06595 GH31_xylosidase_XylS-l 23.0 2.1E+02 0.0045 30.6 6.7 65 12-76 23-97 (292)
178 PRK13210 putative L-xylulose 5 22.6 1.1E+02 0.0024 31.8 4.5 59 14-73 94-153 (284)
179 PRK09997 hydroxypyruvate isome 22.2 1.1E+02 0.0024 31.7 4.3 60 14-73 85-144 (258)
180 cd00311 TIM Triosephosphate is 22.0 1.7E+02 0.0038 30.6 5.7 49 20-74 77-125 (242)
181 cd04882 ACT_Bt0572_2 C-termina 21.8 1.8E+02 0.004 22.6 4.6 55 13-69 10-64 (65)
182 PF08924 DUF1906: Domain of un 21.7 2E+02 0.0044 27.3 5.6 91 12-122 36-127 (136)
183 PRK13209 L-xylulose 5-phosphat 21.6 4.2E+02 0.0092 27.5 8.6 102 13-143 56-161 (283)
184 cd07944 DRE_TIM_HOA_like 4-hyd 21.5 1.5E+02 0.0032 31.4 5.1 45 17-73 85-129 (266)
185 PRK12331 oxaloacetate decarbox 21.4 1.9E+02 0.004 33.2 6.2 52 9-72 91-142 (448)
186 cd06568 GH20_SpHex_like A subg 21.2 1.6E+02 0.0034 32.2 5.4 61 12-72 16-94 (329)
187 TIGR03551 F420_cofH 7,8-dideme 21.0 61 0.0013 35.4 2.2 50 17-69 141-195 (343)
188 cd07944 DRE_TIM_HOA_like 4-hyd 20.8 1.9E+02 0.004 30.6 5.7 141 11-179 17-161 (266)
189 PF12876 Cellulase-like: Sugar 20.8 1.3E+02 0.0028 26.0 3.7 47 129-175 7-62 (88)
190 PLN02540 methylenetetrahydrofo 20.7 2.1E+02 0.0046 33.7 6.5 89 19-121 161-258 (565)
191 PF02811 PHP: PHP domain; Int 20.6 3E+02 0.0066 25.8 6.7 57 3-72 2-61 (175)
192 smart00854 PGA_cap Bacterial c 20.6 8.2E+02 0.018 24.9 10.4 122 17-171 63-208 (239)
193 KOG0259 Tyrosine aminotransfer 20.6 1.3E+02 0.0028 33.7 4.5 61 8-72 177-238 (447)
194 cd02848 Chitinase_N_term Chiti 20.3 4.1E+02 0.009 24.4 6.9 47 454-503 46-93 (106)
195 PRK07094 biotin synthase; Prov 20.2 89 0.0019 33.6 3.2 50 17-69 129-181 (323)
196 TIGR00419 tim triosephosphate 20.2 2E+02 0.0043 29.4 5.5 44 20-73 74-117 (205)
197 cd07937 DRE_TIM_PC_TC_5S Pyruv 20.1 2.4E+02 0.0052 29.8 6.4 46 14-71 91-136 (275)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=3.1e-185 Score=1576.15 Aligned_cols=679 Identities=81% Similarity=1.418 Sum_probs=630.5
Q ss_pred CcceecccCCCCcccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEEeecCceeccc
Q 005690 1 MGSFYFSFFFIWLQMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAE 80 (683)
Q Consensus 1 ~~e~~~~~~r~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~VilrpGPyi~aE 80 (683)
.|||| |||++|++|+|||+||||+|+|||+||||||+|||+||+|||+|++||++||++|+|+|||||||||||||||
T Consensus 48 sG~iH--Y~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAE 125 (840)
T PLN03059 48 SGSIH--YPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAE 125 (840)
T ss_pred EeCcc--cCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeee
Confidence 48998 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccccccCCeEeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccCCCccccCCCCcHHHHHHH
Q 005690 81 WNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWA 160 (683)
Q Consensus 81 w~~GG~P~WL~~~p~~~~Rt~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l 160 (683)
|++||||.||+++|+|++||+|++|+++|++|+++|+++|+++++++++||||||+|||||||++...++.+|++||+||
T Consensus 126 w~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l 205 (840)
T PLN03059 126 WNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGPVEWEIGAPGKAYTKWA 205 (840)
T ss_pred ecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccccceecccCcchHHHHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999998777777899999999
Q ss_pred HHHHhhCCCCcceeeecCCCCCCccccCCCCccccccCCCCCCCCceeeeccccccCccCCCCCCCChHHHHHHHHHHHH
Q 005690 161 AQMAVGLNTGVPWVMCKQDDAPDPVINTCNGFYCEKFVPNQNYKPKMWTEAWTGWFTEFGSAVPTRPAEDLVFSVARFIQ 240 (683)
Q Consensus 161 ~~~~~~~g~~vp~~~~~~~~~~~~~~~t~~g~~~~~~~~~~p~~P~~~~E~~~Gwf~~wG~~~~~~~~~~~~~~~~~~l~ 240 (683)
+++++++|++|||+||++.++++++++||||.+|+.|.+.++.+|+|+||||+|||++||++++.|+++|++.+++++|+
T Consensus 206 ~~~~~~~Gi~VPl~t~dg~~~~~~v~~t~Ng~~~~~f~~~~~~~P~m~tE~w~GWf~~wG~~~~~r~~~d~a~~~~~~l~ 285 (840)
T PLN03059 206 ADMAVKLGTGVPWVMCKQEDAPDPVIDTCNGFYCENFKPNKDYKPKMWTEAWTGWYTEFGGAVPNRPAEDLAFSVARFIQ 285 (840)
T ss_pred HHHHHHcCCCcceEECCCCCCCccceecCCCchhhhcccCCCCCCcEEeccCchhHhhcCCCCCcCCHHHHHHHHHHHHH
Confidence 99999999999999999988888899999999999998887889999999999999999999999999999999999999
Q ss_pred cCCeeeeeeeeccCCCCCCCCCC-CcccccCCCCCcCccCCCCchhHHHHHHHHHHHHhhcCCCCCCCCccccCCCCcce
Q 005690 241 SGGSFINYYMYHGGTNFGRTSGG-FVATSYDYDAPIDEYGLLNEPKWGHLRDLHKAIKLCEPALVSVDPTVKSLGKNQEA 319 (683)
Q Consensus 241 ~g~s~~n~YM~hGGTNfG~~~g~-~~~tSYDy~Apl~E~G~~~t~Ky~~lr~l~~~~~~~~~~l~~~~p~~~~~~~~~~~ 319 (683)
+|+|++||||||||||||||+|+ +++|||||||||+|+|++++|||.+||++|++++.+++.++..+|....+|+.+++
T Consensus 286 ~g~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAPL~E~G~~t~pKy~~lr~l~~~~~~~~~~l~~~~p~~~~lg~~~ea 365 (840)
T PLN03059 286 NGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLPREPKWGHLRDLHKAIKLCEPALVSVDPTVTSLGSNQEA 365 (840)
T ss_pred cCCeeEEeeeccCcCCcccccCCCccccccccCCccccccCcchhHHHHHHHHHHHHHhcCccccCCCCceeccCCceeE
Confidence 99998899999999999999998 59999999999999999966799999999999999988888888877789999999
Q ss_pred eEeccCCCccceeecccCCccceeEeecCccccCCCcceeecCCcccccccccccccccccceeeecccccccccccccc
Q 005690 320 HVFNSKSGKCAAFLANYDTTFSAKVSFGNAQYDLPPWSISVLPDCKTAVFNTARVGVQSSQKKFVPVINAFSWQSYIEET 399 (683)
Q Consensus 320 ~~~~~~~~~~~~fl~n~~~~~~~~v~~~~~~~~~~~~~v~il~~~~~~~~~t~~v~~~~~~~~~~~~~~~~~~~~~~e~~ 399 (683)
.+|.... .|++|+.|++.+...+|.|++++|.+|+|||||||||+.++|+|+++..|++.+.+++....+.|++++|++
T Consensus 366 ~~y~~~~-~caaFl~n~~~~~~~~v~f~g~~y~lp~~Svsilpd~~~~lfnta~v~~q~~~~~~~~~~~~~~w~~~~e~~ 444 (840)
T PLN03059 366 HVFKSKS-ACAAFLANYDTKYSVKVTFGNGQYDLPPWSVSILPDCKTAVFNTARLGAQSSQMKMNPVGSTFSWQSYNEET 444 (840)
T ss_pred EEccCcc-chhhheeccCCCCceeEEECCcccccCccceeecccccceeeeccccccccceeecccccccccceeecccc
Confidence 9998766 799999999989999999999999999999999999999999999998887666555554457899999984
Q ss_pred -cCCCCCCCcccCchhhhhcccCCCcceEEEEEEecCCCCcccccCCCCCceEecCcceEEEEEECCEEEEEEEcccCCC
Q 005690 400 -ASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENP 478 (683)
Q Consensus 400 -~~~~~~~~~~~~~~~Eql~~t~d~~Gyl~Yrt~i~~~~~~~~~~~g~~~~L~i~~~~d~a~vfvng~~~G~~~~~~~~~ 478 (683)
+...+ .+++.++++||+++|+|.+||+||||+|..+.++..++++.+++|+|.+++|++||||||+++|+.+++....
T Consensus 445 ~~~~~~-~~~~~e~l~e~~n~t~d~~dYlwY~t~i~~~~~~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~~~~~~~ 523 (840)
T PLN03059 445 ASAYTD-DTTTMDGLWEQINVTRDATDYLWYMTEVHIDPDEGFLKTGQYPVLTIFSAGHALHVFINGQLAGTVYGELSNP 523 (840)
T ss_pred cccccC-CCcchhhHHHhhcccCCCCceEEEEEEEeecCCccccccCCCceEEEcccCcEEEEEECCEEEEEEEeecCCc
Confidence 43333 3788899999999999999999999999886655445667788999999999999999999999999987777
Q ss_pred eeEEeeeeecCCCccEEEEEEecCCcccccccccccccceeccEEEccccCcceecccCeeEEEecCccccccccccCCC
Q 005690 479 KLTFSKNVKLRPGVNKISLLSTSVGLPNVGTHFEKWNAGVLGPVTLKGLNEGTRDISKQKWTYKIGLKGEALSLHTVSGS 558 (683)
Q Consensus 479 ~~~~~~~~~l~~g~~~L~ILven~Gr~NyG~~~~~~~kGI~g~V~l~g~~~g~~~L~~~~W~~~~~l~ge~~~~~~~~~~ 558 (683)
.++++.+++++.|.|+|+||||||||+|||++|+++.|||+|+|+|+|.+.+..+|++|.|.|+++|.||.++++..++.
T Consensus 524 ~~~~~~~v~l~~g~n~L~iLse~vG~~NyG~~le~~~kGI~g~V~i~g~~~g~~dls~~~W~y~lgL~GE~~~i~~~~~~ 603 (840)
T PLN03059 524 KLTFSQNVKLTVGINKISLLSVAVGLPNVGLHFETWNAGVLGPVTLKGLNEGTRDLSGWKWSYKIGLKGEALSLHTITGS 603 (840)
T ss_pred ceEEecccccCCCceEEEEEEEeCCCCccCcccccccccccccEEEecccCCceecccCccccccCccceeccccccCCC
Confidence 88998888899999999999999999999999999999999999999988888899999999999999999999987656
Q ss_pred CCccccccCccCCCCCceEEEEEEECCCCCCCeEEecCCCceEEEEEcCccccccccCCCCCCCCCCCCCCCcccccccc
Q 005690 559 SSVEWAQGASLAQKQPMTWYKTTFNVPPGNDPLALDMGAMGKGMVWINGQSIGRHWPGYIGNGNCGGCNYAGTYTEKKCR 638 (683)
Q Consensus 559 ~~~~w~~~~~~~~~~~~~fYk~~F~~~~~~d~~~Ld~~g~gKG~vwVNG~nlGRYW~~~~~~G~~~~~~~~g~~~~~~~~ 638 (683)
.+++|++.+..+..+||+|||++|++|++.|||||||++||||+|||||+||||||+.+...++|+.|+|+|.|++.||+
T Consensus 604 ~~~~W~~~~~~~~~~p~twYK~~Fd~p~g~Dpv~LDm~gmGKG~aWVNG~nIGRYW~~~a~~~gC~~c~y~g~~~~~kc~ 683 (840)
T PLN03059 604 SSVEWVEGSLLAQKQPLTWYKTTFDAPGGNDPLALDMSSMGKGQIWINGQSIGRHWPAYTAHGSCNGCNYAGTFDDKKCR 683 (840)
T ss_pred CCccccccccccCCCCceEEEEEEeCCCCCCCEEEecccCCCeeEEECCcccccccccccccCCCccccccccccchhhh
Confidence 67889776544445679999999999999999999999999999999999999999752224678999999999999999
Q ss_pred cCCCCCeeeEeecCcccccCCCcEEEEEEecCCCCccEEEEEEeC
Q 005690 639 TYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWGGEPHWISLLKRTT 683 (683)
Q Consensus 639 ~~~g~PqqtlYhVP~~~Lk~g~N~IvvfEe~g~~p~~i~l~~~~~ 683 (683)
||||+|||||||||++|||+|+|+||||||+|++|..|+|+++++
T Consensus 684 ~~cggP~q~lYHVPr~~Lk~g~N~lViFEe~gg~p~~I~~~~~~~ 728 (840)
T PLN03059 684 TNCGEPSQRWYHVPRSWLKPSGNLLIVFEEWGGNPAGISLVKRTT 728 (840)
T ss_pred ccCCCceeEEEeCcHHHhccCCceEEEEEecCCCCCceEEEEeec
Confidence 999999999999999999999999999999999999999999864
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-147 Score=1220.80 Aligned_cols=598 Identities=60% Similarity=1.085 Sum_probs=551.0
Q ss_pred cceecccCCCCcccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEEeecCceecccc
Q 005690 2 GSFYFSFFFIWLQMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEW 81 (683)
Q Consensus 2 ~e~~~~~~r~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~VilrpGPyi~aEw 81 (683)
|++| |||++|++|+|+|+|+|++|+|+|+||||||+|||.||+|||+|+.||++||++|++.|||||||+||||||||
T Consensus 39 GsIH--Y~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw 116 (649)
T KOG0496|consen 39 GSIH--YPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEW 116 (649)
T ss_pred eccc--cccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecc
Confidence 5666 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCCeEeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccCCCccccCCCCcHHHHHHHH
Q 005690 82 NYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAA 161 (683)
Q Consensus 82 ~~GG~P~WL~~~p~~~~Rt~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~ 161 (683)
++||+|.||...|+|.+||+|++|+++|++|+++|++++| +|+++|||||||+|||||||.+...+++..+.|+.|-.
T Consensus 117 ~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk--~L~~~qGGPIIl~QIENEYG~~~~~~~~~~k~y~~w~a 194 (649)
T KOG0496|consen 117 NFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMK--KLFASQGGPIILVQIENEYGNYLRALGAEGKSYLKWAA 194 (649)
T ss_pred cCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHH--HHHhhcCCCEEEEEeechhhHHHHHHHHHHHHhhccce
Confidence 9999999999999999999999999999999999999999 99999999999999999999887777788899999999
Q ss_pred HHHhhCCCCcceeeecCCCCCCccccCCCCccc-cccC-CCCCCCCceeeeccccccCccCCCCCCCChHHHHHHHHHHH
Q 005690 162 QMAVGLNTGVPWVMCKQDDAPDPVINTCNGFYC-EKFV-PNQNYKPKMWTEAWTGWFTEFGSAVPTRPAEDLVFSVARFI 239 (683)
Q Consensus 162 ~~~~~~g~~vp~~~~~~~~~~~~~~~t~~g~~~-~~~~-~~~p~~P~~~~E~~~Gwf~~wG~~~~~~~~~~~~~~~~~~l 239 (683)
.++...+.++||+||.+.++|++++++|||++| +.|. +++|++|+||||||+|||++||++++.|++++++..+++++
T Consensus 195 ~m~~~l~~gvpw~mCk~~dapd~~in~cng~~c~~~f~~pn~~~kP~~wtE~wtgwf~~wGg~~~~R~~e~ia~~va~fl 274 (649)
T KOG0496|consen 195 VLATSLGTGVPWVMCKQDDAPDPGINTCNGFYCGDTFKRPNSPNKPLVWTENWTGWFTHWGGPHPCRPVEDIALSVARFL 274 (649)
T ss_pred EEEEecCCCCceeEecCCCCCCccccccCCccchhhhccCCCCCCCceecccccchhhhhCCCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 9998 89999999999999999999999999999999999999999
Q ss_pred HcCCeeeeeeeeccCCCCCCCCCCCcccccCCCCCcCccCCCCchhHHHHHHHHHHHHhhcCCCCCCCCccccCCCCcce
Q 005690 240 QSGGSFINYYMYHGGTNFGRTSGGFVATSYDYDAPIDEYGLLNEPKWGHLRDLHKAIKLCEPALVSVDPTVKSLGKNQEA 319 (683)
Q Consensus 240 ~~g~s~~n~YM~hGGTNfG~~~g~~~~tSYDy~Apl~E~G~~~t~Ky~~lr~l~~~~~~~~~~l~~~~p~~~~~~~~~~~ 319 (683)
++|+|++||||+|||||||++||.+.+|||||||||| |..++|||.|+|.+|..++.+++.+...++...++++.++
T Consensus 275 s~ggs~vNyYM~hGGTNFGrt~G~~~atsy~~dap~d--gl~~~pk~ghlk~~hts~d~~ep~lv~gd~~~~kyg~~~~- 351 (649)
T KOG0496|consen 275 SKGGSSVNYYMYHGGTNFGRTNGPFIATSYDYDAPLD--GLLRQPKYGHLKPLHTSYDYCEPALVAGDITTAKYGNLRE- 351 (649)
T ss_pred hcCccceEEEEeecccCCCcccCcccccccccccccc--hhhcCCCccccccchhhhhhcCccccccCcccccccchhh-
Confidence 9999999999999999999999999999999999999 9999999999999999999999988888876666665543
Q ss_pred eEeccCCCccceeecccCCccceeEeecCccccCCCcceeecCCcccccccccccccccccceeeecccccccccccccc
Q 005690 320 HVFNSKSGKCAAFLANYDTTFSAKVSFGNAQYDLPPWSISVLPDCKTAVFNTARVGVQSSQKKFVPVINAFSWQSYIEET 399 (683)
Q Consensus 320 ~~~~~~~~~~~~fl~n~~~~~~~~v~~~~~~~~~~~~~v~il~~~~~~~~~t~~v~~~~~~~~~~~~~~~~~~~~~~e~~ 399 (683)
.|.+|+.|++......+.|++.++.+|+|+++|+|||++++|+|+++.. .|....|++
T Consensus 352 --------~C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck~~~~nta~~~~--------------~~~~~~e~~ 409 (649)
T KOG0496|consen 352 --------ACAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCKTVVYNTAKVMA--------------QWISFTEPI 409 (649)
T ss_pred --------HHHHHHhcCCCCCCCccccCCCccccCceeEEechhhcchhhhcccccc--------------ccccccCCC
Confidence 4999999999989999999999999999999999999999999998742 155555654
Q ss_pred cCCCCCCCcccCchhhhhcccCCCcceEEEEEEecCCCCcccccCCCCCceEec-CcceEEEEEECCEEEEEEEcccCCC
Q 005690 400 ASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIW-SAGHALQVFINGQLSGTVYGSLENP 478 (683)
Q Consensus 400 ~~~~~~~~~~~~~~~Eql~~t~d~~Gyl~Yrt~i~~~~~~~~~~~g~~~~L~i~-~~~d~a~vfvng~~~G~~~~~~~~~ 478 (683)
+ +|..+ |.+||++|+|.++.+.++ ...|+|. +++|++||||||+++|+++++....
T Consensus 410 ~-------------~~~~~---~~~~~ll~~~~~t~d~sd-------~t~~~i~ls~g~~~hVfvNg~~~G~~~g~~~~~ 466 (649)
T KOG0496|consen 410 P-------------SEAVG---QSFGGLLEQTNLTKDKSD-------TTSLKIPLSLGHALHVFVNGEFAGSLHGNNEKI 466 (649)
T ss_pred c-------------ccccc---CcceEEEEEEeeccccCC-------CceEeecccccceEEEEECCEEeeeEeccccce
Confidence 4 34443 478899999999866543 1468888 9999999999999999999987777
Q ss_pred eeEEeeeeecCCCccEEEEEEecCCcccccccccccccceeccEEEccccCcceecccCeeEEEecCccccccccccCCC
Q 005690 479 KLTFSKNVKLRPGVNKISLLSTSVGLPNVGTHFEKWNAGVLGPVTLKGLNEGTRDISKQKWTYKIGLKGEALSLHTVSGS 558 (683)
Q Consensus 479 ~~~~~~~~~l~~g~~~L~ILven~Gr~NyG~~~~~~~kGI~g~V~l~g~~~g~~~L~~~~W~~~~~l~ge~~~~~~~~~~ 558 (683)
.+.+..++.|..|.|+|+|||||+||+||| +++++.|||+|+|+|+|. ++++.++|.|+++|.||....|+.++.
T Consensus 467 ~~~~~~~~~l~~g~n~l~iL~~~~G~~n~G-~~e~~~~Gi~g~v~l~g~----~~l~~~~w~~~~gl~ge~~~~~~~~~~ 541 (649)
T KOG0496|consen 467 KLNLSQPVGLKAGENKLALLSENVGLPNYG-HFENDFKGILGPVYLNGL----IDLTWTKWPYKVGLKGEKLGLHTEEGS 541 (649)
T ss_pred eEEeecccccccCcceEEEEEEecCCCCcC-cccccccccccceEEeee----eccceeecceecccccchhhccccccc
Confidence 888888888999999999999999999999 889999999999999997 578877899999999999999999888
Q ss_pred CCccccccCccCCCCCceEEEEEEECCCCCCCeEEecCCCceEEEEEcCccccccccCCCCCCCCCCCCCCCcccccccc
Q 005690 559 SSVEWAQGASLAQKQPMTWYKTTFNVPPGNDPLALDMGAMGKGMVWINGQSIGRHWPGYIGNGNCGGCNYAGTYTEKKCR 638 (683)
Q Consensus 559 ~~~~w~~~~~~~~~~~~~fYk~~F~~~~~~d~~~Ld~~g~gKG~vwVNG~nlGRYW~~~~~~G~~~~~~~~g~~~~~~~~ 638 (683)
.+++|......+..+|.+||+ +|++|++.+|++|||.|||||+|||||+||||||++ .|
T Consensus 542 ~~v~w~~~~~~~~k~P~~w~k-~f~~p~g~~~t~Ldm~g~GKG~vwVNG~niGRYW~~---~G----------------- 600 (649)
T KOG0496|consen 542 SKVKWKKLSNTATKQPLTWYK-TFDIPSGSEPTALDMNGWGKGQVWVNGQNIGRYWPS---FG----------------- 600 (649)
T ss_pred cccceeeccCcccCCCeEEEE-EecCCCCCCCeEEecCCCcceEEEECCcccccccCC---CC-----------------
Confidence 889998765544347889999 999999999999999999999999999999999997 59
Q ss_pred cCCCCCeeeEeecCcccccCCCcEEEEEEecCCCCccEEEEEEeC
Q 005690 639 TYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWGGEPHWISLLKRTT 683 (683)
Q Consensus 639 ~~~g~PqqtlYhVP~~~Lk~g~N~IvvfEe~g~~p~~i~l~~~~~ 683 (683)
||+++ |||++|||++.|+||||||+|++|..|+|+++.+
T Consensus 601 -----~Q~~y-hvPr~~Lk~~~N~lvvfEee~~~p~~i~~~~~~~ 639 (649)
T KOG0496|consen 601 -----PQRTY-HVPRSWLKPSGNLLVVFEEEGGDPNGISFVTRPV 639 (649)
T ss_pred -----CceEE-ECcHHHhCcCCceEEEEEeccCCCccceEEEeEe
Confidence 97775 5999999999999999999999999999998863
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=2.3e-86 Score=707.74 Aligned_cols=284 Identities=43% Similarity=0.783 Sum_probs=219.2
Q ss_pred CcceecccCCCCcccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEEeecCceeccc
Q 005690 1 MGSFYFSFFFIWLQMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAE 80 (683)
Q Consensus 1 ~~e~~~~~~r~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~VilrpGPyi~aE 80 (683)
+|||| |||+||++|+|+|+||||+|+|||++|||||+|||+||+|||+|.+||++||++|+|+||+||||||||||||
T Consensus 13 ~Ge~h--y~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE 90 (319)
T PF01301_consen 13 SGEFH--YFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAE 90 (319)
T ss_dssp EEEE---GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEEEEEES---TT
T ss_pred Eeeec--cccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEEecccceeccc
Confidence 58999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccccccCCeEeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccCCCccccCCCCcHHHHHHH
Q 005690 81 WNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWA 160 (683)
Q Consensus 81 w~~GG~P~WL~~~p~~~~Rt~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l 160 (683)
|++||+|.||++++++++||+|+.|+++|++|+++|+++++ ++++++||||||+|||||||.. .++++||+.|
T Consensus 91 ~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~GGpII~vQvENEyg~~-----~~~~~Y~~~l 163 (319)
T PF01301_consen 91 WDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIK--PLQYTNGGPIIMVQVENEYGSY-----GTDRAYMEAL 163 (319)
T ss_dssp BGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHG--GGBGGGTSSEEEEEESSSGGCT-----SS-HHHHHHH
T ss_pred ccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHH--hhhhcCCCceehhhhhhhhCCC-----cccHhHHHHH
Confidence 99999999999999999999999999999999999999999 8999999999999999999954 4699999999
Q ss_pred HHHHhhCCCC-cceeeecCC--------CCCCccccCCCCccc-cc-------cCCCCCCCCceeeeccccccCccCCCC
Q 005690 161 AQMAVGLNTG-VPWVMCKQD--------DAPDPVINTCNGFYC-EK-------FVPNQNYKPKMWTEAWTGWFTEFGSAV 223 (683)
Q Consensus 161 ~~~~~~~g~~-vp~~~~~~~--------~~~~~~~~t~~g~~~-~~-------~~~~~p~~P~~~~E~~~Gwf~~wG~~~ 223 (683)
++++++.+++ +++++++.. +.++..+.+++++.| +. ....+|++|+|++|||+|||++||+++
T Consensus 164 ~~~~~~~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~E~~~Gwf~~WG~~~ 243 (319)
T PF01301_consen 164 KDAYRDWGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQPNQPLMCTEFWGGWFDHWGGPH 243 (319)
T ss_dssp HHHHHHTT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHTTS--EEEEEESS---BTTS--
T ss_pred HHHHHHhhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCCCCCeEEEEeccccccccCCCC
Confidence 9999999998 666666542 123323444445555 21 135578899999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCeeeeeeeeccCCCCCCCCCCCc-----ccccCCCCCcCccCCCCchhHHHHHHHHHH
Q 005690 224 PTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGGFV-----ATSYDYDAPIDEYGLLNEPKWGHLRDLHKA 295 (683)
Q Consensus 224 ~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~~~-----~tSYDy~Apl~E~G~~~t~Ky~~lr~l~~~ 295 (683)
+.+++++++..+.+++++|.+ +||||||||||||+++|+.. +|||||+|||+|+|++ ||||.+||+||.+
T Consensus 244 ~~~~~~~~~~~l~~~l~~g~~-~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI~E~G~~-~~Ky~~lr~l~~~ 318 (319)
T PF01301_consen 244 YTRPAEDVAADLARMLSKGNS-LNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPIDEYGQL-TPKYYELRRLHQK 318 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHCSE-EEEEECE--B--TT-B-EETTTEEB-SB--TT-SB-TTS-B--HHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHHhhcc-cceeeccccCCccccccCCCCCCCCcccCCcCCccCcCCCc-CHHHHHHHHHHhc
Confidence 999999999999999999955 89999999999999999843 4999999999999999 5999999999874
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.2e-34 Score=324.36 Aligned_cols=267 Identities=20% Similarity=0.262 Sum_probs=192.8
Q ss_pred cccCCCCcccHHHHHHHHHHCCCCEEEE-cccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEEeecCc-eeccccCC
Q 005690 6 FSFFFIWLQMWPDLIQKAKDGGLDVIQT-YVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP-YVCAEWNY 83 (683)
Q Consensus 6 ~~~~r~~~~~W~d~l~k~ka~G~N~V~~-yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~VilrpGP-yi~aEw~~ 83 (683)
|+|+|.+++.|.|||+|||++|+|+|++ |+.||+|||++|+|||+ .+|++ ||++|++.||+||||||| .+|.+|..
T Consensus 22 y~p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~-~~D~~-~l~~a~~~Gl~vil~t~P~g~~P~Wl~ 99 (673)
T COG1874 22 YYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT-WLDEI-FLERAYKAGLYVILRTGPTGAPPAWLA 99 (673)
T ss_pred cChHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc-cchHH-HHHHHHhcCceEEEecCCCCCCchHHh
Confidence 4599999999999999999999999999 99999999999999999 88998 999999999999999999 99999999
Q ss_pred CCCCccccccCCeEee---------cCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccCCCccccCCCCcH
Q 005690 84 GGFPVWLKYVPGIEFR---------TDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGK 154 (683)
Q Consensus 84 GG~P~WL~~~p~~~~R---------t~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~ 154 (683)
+++|.||..++.-..| .+++.|++++++ |+++|+ ++++++|++||+||++||||++.+.+..|..
T Consensus 100 ~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~----i~~~ir--er~~~~~~~v~~w~~dneY~~~~~~~~~~~~ 173 (673)
T COG1874 100 KKYPEILAVDENGRVRSDGARENICPVSPVYREYLDR----ILQQIR--ERLYGNGPAVITWQNDNEYGGHPCYCDYCQA 173 (673)
T ss_pred cCChhheEecCCCcccCCCcccccccccHHHHHHHHH----HHHHHH--HHHhccCCceeEEEccCccCCccccccccHH
Confidence 9999999876653332 346668888877 445555 3345899999999999999997666777899
Q ss_pred HHHHHHHHHHhhC-CCCcceeeecCC-CCC-CccccCCC-----Cccc--cccCCCCCCC----Cceeeecccccc-Ccc
Q 005690 155 AYAKWAAQMAVGL-NTGVPWVMCKQD-DAP-DPVINTCN-----GFYC--EKFVPNQNYK----PKMWTEAWTGWF-TEF 219 (683)
Q Consensus 155 ~y~~~l~~~~~~~-g~~vp~~~~~~~-~~~-~~~~~t~~-----g~~~--~~~~~~~p~~----P~~~~E~~~Gwf-~~w 219 (683)
.+..||++.+-.+ ..+.+|=+..-+ +.. -..+.+.+ .... -++......+ +....|.+-+|| +.|
T Consensus 174 ~f~~wLk~~yg~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e~~~~~~~ld~~~f~~e~~~~~~~~~~~~~~~~~P~~p 253 (673)
T COG1874 174 AFRLWLKKGYGSLDNLNEAWGTSFWSHTYKDFDEIMSPNPFGELPLPGLYLDYRRFESEQILEFVREEGEAIKAYFPNRP 253 (673)
T ss_pred HHHHHHHhCcchHHhhhhhhhhhhcccccccHHhhcCCCCccccCCccchhhHhhhhhhhhHHHHHHHHHHHHHhCCCCC
Confidence 9999999987322 222333221100 000 00011111 0000 0111111222 556667788888 666
Q ss_pred CCCCCCCC-hHHHHHHHHHHHHcCCeeeeeeeeccCCCCC------CCCCC-----------CcccccCCCCCcCccCCC
Q 005690 220 GSAVPTRP-AEDLVFSVARFIQSGGSFINYYMYHGGTNFG------RTSGG-----------FVATSYDYDAPIDEYGLL 281 (683)
Q Consensus 220 G~~~~~~~-~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG------~~~g~-----------~~~tSYDy~Apl~E~G~~ 281 (683)
..+.-... .+.-++.+.+.+..... -||||||+|++|+ +.+++ ...|++++++.+.+.|..
T Consensus 254 vt~nl~~~~~~~~~~~~~~~ld~~sw-dny~~~~~~~~~~~~~h~l~r~~~~~~~~~~me~~P~~vn~~~~n~~~~~G~~ 332 (673)
T COG1874 254 VTPNLLAAFKKFDAYKWEKVLDFASW-DNYPAWHRGRDFTKFIHDLFRNGKQGQPFWLMEQLPSVVNWALYNKLKRPGAL 332 (673)
T ss_pred CChhHhhhhhhcchHHHHHhcChhhh-hhhhhhccccchhhhhHHHHHhhccCCceeeccCCcchhhhhhccCCCCCccc
Confidence 65443222 22233455566766655 6999999999999 66655 257999999999999984
No 5
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.84 E-value=8.8e-21 Score=207.61 Aligned_cols=257 Identities=20% Similarity=0.277 Sum_probs=157.5
Q ss_pred CcccHHHHHHHHHHCCCCEEEE-cccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEEeecCceeccccCCCCCCccc
Q 005690 12 WLQMWPDLIQKAKDGGLDVIQT-YVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWL 90 (683)
Q Consensus 12 ~~~~W~d~l~k~ka~G~N~V~~-yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~WL 90 (683)
+++.|+++|++||++|+|+|++ .+.|+..||+||+|||+ .|+++|++|+++||+|||+.. .+..|.||
T Consensus 8 ~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~---~lD~~l~~a~~~Gi~viL~~~--------~~~~P~Wl 76 (374)
T PF02449_consen 8 PEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFS---WLDRVLDLAAKHGIKVILGTP--------TAAPPAWL 76 (374)
T ss_dssp -CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---H---HHHHHHHHHHCTT-EEEEEEC--------TTTS-HHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecH---HHHHHHHHHHhccCeEEEEec--------ccccccch
Confidence 5699999999999999999996 68899999999999999 899999999999999999975 46789999
Q ss_pred cc-cCCeEe----------------ecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccCCCccccCCCCc
Q 005690 91 KY-VPGIEF----------------RTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPG 153 (683)
Q Consensus 91 ~~-~p~~~~----------------Rt~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~ 153 (683)
.+ .|++.. ..++|.|++++++++++|+++++++ ..||++||+||++...+.+..+.
T Consensus 77 ~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~-------p~vi~~~i~NE~~~~~~~~~~~~ 149 (374)
T PF02449_consen 77 YDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDH-------PAVIGWQIDNEPGYHRCYSPACQ 149 (374)
T ss_dssp HCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTT-------TTEEEEEECCSTTCTS--SHHHH
T ss_pred hhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhcccc-------ceEEEEEeccccCcCcCCChHHH
Confidence 64 566432 1346789999999999999888854 47999999999987533334567
Q ss_pred HHHHHHHHHHHhhC-------CC-------------CcceeeecCC-----------------------------CCCCc
Q 005690 154 KAYAKWAAQMAVGL-------NT-------------GVPWVMCKQD-----------------------------DAPDP 184 (683)
Q Consensus 154 ~~y~~~l~~~~~~~-------g~-------------~vp~~~~~~~-----------------------------~~~~~ 184 (683)
++|.+||++++... |. ..|..+.... ..|+-
T Consensus 150 ~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~ir~~~p~~ 229 (374)
T PF02449_consen 150 AAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADIIREYDPDH 229 (374)
T ss_dssp HHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 89999999987531 11 1122211000 00110
Q ss_pred cccCCC-------Cc-------cc-----ccc----------------------CCCCCCCCceeeeccccccCccCCCC
Q 005690 185 VINTCN-------GF-------YC-----EKF----------------------VPNQNYKPKMWTEAWTGWFTEFGSAV 223 (683)
Q Consensus 185 ~~~t~~-------g~-------~~-----~~~----------------------~~~~p~~P~~~~E~~~Gwf~~wG~~~ 223 (683)
.-+.| +. .+ +.+ ....+++|.+++|.++| -..|+...
T Consensus 230 -~vt~n~~~~~~~~~d~~~~a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~~~~kpf~v~E~~~g-~~~~~~~~ 307 (374)
T PF02449_consen 230 -PVTTNFMGSWFNGIDYFKWAKYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRSLAKGKPFWVMEQQPG-PVNWRPYN 307 (374)
T ss_dssp -EEE-EE-TT---SS-HHHHGGGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHHHTTT--EEEEEE--S---SSSSS-
T ss_pred -eEEeCccccccCcCCHHHHHhhCCcceeccccCcccCCCCCCHHHHHHHHHHHHhhcCCCceEeecCCCC-CCCCccCC
Confidence 00101 00 00 000 01247899999999999 55676554
Q ss_pred CCCChHHHHHHHHHHHHcCCeeeeeeeeccCCCCCCCCCCCcccccCCCCCcCccC-CCCchhHHHHHHHHHHHHh
Q 005690 224 PTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGGFVATSYDYDAPIDEYG-LLNEPKWGHLRDLHKAIKL 298 (683)
Q Consensus 224 ~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~~~~tSYDy~Apl~E~G-~~~t~Ky~~lr~l~~~~~~ 298 (683)
....+..+....-..++.|+..+.|+-+ ....+|.=.. ..+.|+-+| .+ +++|.+++++.+.|+.
T Consensus 308 ~~~~pg~~~~~~~~~~A~Ga~~i~~~~w-r~~~~g~E~~--------~~g~~~~dg~~~-~~~~~e~~~~~~~l~~ 373 (374)
T PF02449_consen 308 RPPRPGELRLWSWQAIAHGADGILFWQW-RQSRFGAEQF--------HGGLVDHDGREP-TRRYREVAQLGRELKK 373 (374)
T ss_dssp ----TTHHHHHHHHHHHTT-S-EEEC-S-B--SSSTTTT--------S--SB-TTS--B--HHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHhCCeeEeeec-cCCCCCchhh--------hcccCCccCCCC-CcHHHHHHHHHHHHhc
Confidence 4445566666666778999988877765 3333342211 136778889 66 7899999999887764
No 6
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=99.00 E-value=5.9e-10 Score=102.05 Aligned_cols=72 Identities=38% Similarity=0.755 Sum_probs=52.1
Q ss_pred CCCceEEEEEEECCCCCC-CeE-Eec--CCCceEEEEEcCccccccccCCCCCCCCCCCCCCCcccccccccCCCCCeee
Q 005690 572 KQPMTWYKTTFNVPPGND-PLA-LDM--GAMGKGMVWINGQSIGRHWPGYIGNGNCGGCNYAGTYTEKKCRTYCGKPSQR 647 (683)
Q Consensus 572 ~~~~~fYk~~F~~~~~~d-~~~-Ld~--~g~gKG~vwVNG~nlGRYW~~~~~~G~~~~~~~~g~~~~~~~~~~~g~Pqqt 647 (683)
..+..|||++|+... .| .+. |+. ....+++|||||++|||||+. +| ||++
T Consensus 33 ~~g~~~Yrg~F~~~~-~~~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~---~g----------------------~q~t 86 (111)
T PF13364_consen 33 HAGYLWYRGTFTGTG-QDTSLTPLNIQGGNAFRASVWVNGWFLGSYWPG---IG----------------------PQTT 86 (111)
T ss_dssp SSCEEEEEEEEETTT-EEEEEE-EEECSSTTEEEEEEETTEEEEEEETT---TE----------------------CCEE
T ss_pred CCCCEEEEEEEeCCC-cceeEEEEeccCCCceEEEEEECCEEeeeecCC---CC----------------------ccEE
Confidence 357899999997422 22 223 333 457799999999999999975 79 9999
Q ss_pred EeecCcccccCCCcEEEEE-EecC
Q 005690 648 WYHVPRSWLKPSGNLLVVF-EEWG 670 (683)
Q Consensus 648 lYhVP~~~Lk~g~N~Ivvf-Ee~g 670 (683)
++ ||+++|+.++|.|+|+ +..|
T Consensus 87 f~-~p~~il~~~n~v~~vl~~~~g 109 (111)
T PF13364_consen 87 FS-VPAGILKYGNNVLVVLWDNMG 109 (111)
T ss_dssp EE-E-BTTBTTCEEEEEEEEE-ST
T ss_pred EE-eCceeecCCCEEEEEEEeCCC
Confidence 88 9999999885555554 5444
No 7
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.68 E-value=8.3e-08 Score=87.91 Aligned_cols=84 Identities=23% Similarity=0.319 Sum_probs=58.6
Q ss_pred hhhhcccCCCcceEEEEEEecCCCCcccccCCCCCc-eEec-CcceEEEEEECCEEEEEEEcccCCCeeEEeeeee-cCC
Q 005690 414 WEQVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPL-LTIW-SAGHALQVFINGQLSGTVYGSLENPKLTFSKNVK-LRP 490 (683)
Q Consensus 414 ~Eql~~t~d~~Gyl~Yrt~i~~~~~~~~~~~g~~~~-L~i~-~~~d~a~vfvng~~~G~~~~~~~~~~~~~~~~~~-l~~ 490 (683)
.+..+.+++.+|++||||+|.....+. ... |.+. +.+++++|||||+++|+.....+ .+.+|+.|.. |+.
T Consensus 24 ~l~~~~~g~~~g~~~Yrg~F~~~~~~~------~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~g-~q~tf~~p~~il~~ 96 (111)
T PF13364_consen 24 VLYASDYGFHAGYLWYRGTFTGTGQDT------SLTPLNIQGGNAFRASVWVNGWFLGSYWPGIG-PQTTFSVPAGILKY 96 (111)
T ss_dssp STCCGCGTSSSCEEEEEEEEETTTEEE------EEE-EEECSSTTEEEEEEETTEEEEEEETTTE-CCEEEEE-BTTBTT
T ss_pred eeccCccccCCCCEEEEEEEeCCCcce------eEEEEeccCCCceEEEEEECCEEeeeecCCCC-ccEEEEeCceeecC
Confidence 556666778999999999997533221 123 4444 67899999999999999883222 2345555543 666
Q ss_pred CccEEEEEEecCCc
Q 005690 491 GVNKISLLSTSVGL 504 (683)
Q Consensus 491 g~~~L~ILven~Gr 504 (683)
+.++|.+|+++||+
T Consensus 97 ~n~v~~vl~~~~g~ 110 (111)
T PF13364_consen 97 GNNVLVVLWDNMGH 110 (111)
T ss_dssp CEEEEEEEEE-STT
T ss_pred CCEEEEEEEeCCCC
Confidence 77899999999996
No 8
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.49 E-value=1e-06 Score=91.67 Aligned_cols=141 Identities=19% Similarity=0.215 Sum_probs=93.3
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCccC-CcCCe-eeeccchhHHHHHHHHHHcCcEEEeecCceeccccCCCCCCccccc
Q 005690 15 MWPDLIQKAKDGGLDVIQTYVFWNGHE-PTQGN-YYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 92 (683)
Q Consensus 15 ~W~d~l~k~ka~G~N~V~~yv~Wn~hE-p~~G~-~dF~G~~dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~WL~~ 92 (683)
.-++.++.||++|+|+|++.+.|...+ +.|+. ++=+.-..|+++|+.|+++||+|||.+=. .|.|...
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~----------~~~w~~~ 91 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHN----------APGWANG 91 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEE----------STTCSSS
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEecc----------Ccccccc
Confidence 678999999999999999999995555 67764 66556679999999999999999987522 2677432
Q ss_pred cCCeEeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccCCCcccc--CC----CCcHHHHHHHHHHHhh
Q 005690 93 VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWD--IG----APGKAYAKWAAQMAVG 166 (683)
Q Consensus 93 ~p~~~~Rt~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~--~~----~~~~~y~~~l~~~~~~ 166 (683)
.... ...+...+....+.+.|+++++ +..+|++++|=||....... .. ..-.++++.+.+..|+
T Consensus 92 ~~~~---~~~~~~~~~~~~~~~~la~~y~-------~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~ 161 (281)
T PF00150_consen 92 GDGY---GNNDTAQAWFKSFWRALAKRYK-------DNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRA 161 (281)
T ss_dssp TSTT---TTHHHHHHHHHHHHHHHHHHHT-------TTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHH
T ss_pred cccc---ccchhhHHHHHhhhhhhccccC-------CCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHh
Confidence 1110 1112233444455556666665 23479999999999764211 00 0113555666667788
Q ss_pred CCCCcceee
Q 005690 167 LNTGVPWVM 175 (683)
Q Consensus 167 ~g~~vp~~~ 175 (683)
.+.+.+++.
T Consensus 162 ~~~~~~i~~ 170 (281)
T PF00150_consen 162 ADPNHLIIV 170 (281)
T ss_dssp TTSSSEEEE
T ss_pred cCCcceeec
Confidence 887766554
No 9
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=98.22 E-value=1.6e-05 Score=84.74 Aligned_cols=166 Identities=21% Similarity=0.299 Sum_probs=102.6
Q ss_pred CCCcccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEEeecCce-eccccCCCCCCc
Q 005690 10 FIWLQMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPY-VCAEWNYGGFPV 88 (683)
Q Consensus 10 r~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~VilrpGPy-i~aEw~~GG~P~ 88 (683)
..+++.|+++|+.||++|+|+|++ .|-|. =.+|+++|-++||.|+.-+ |. -++.|..-|.
T Consensus 32 a~~~~~~~~d~~l~k~~G~N~iR~-----~h~p~-----------~~~~~~~cD~~GilV~~e~-~~~~~~~~~~~~~-- 92 (298)
T PF02836_consen 32 AMPDEAMERDLELMKEMGFNAIRT-----HHYPP-----------SPRFYDLCDELGILVWQEI-PLEGHGSWQDFGN-- 92 (298)
T ss_dssp ---HHHHHHHHHHHHHTT-SEEEE-----TTS-------------SHHHHHHHHHHT-EEEEE--S-BSCTSSSSTSC--
T ss_pred cCCHHHHHHHHHHHHhcCcceEEc-----ccccC-----------cHHHHHHHhhcCCEEEEec-cccccCccccCCc--
Confidence 357899999999999999999999 34432 1489999999999998754 21 1122221111
Q ss_pred cccccCCeEeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccCCCccccCCCCcHHHHHHHHHHHhhCC
Q 005690 89 WLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLN 168 (683)
Q Consensus 89 WL~~~p~~~~Rt~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g 168 (683)
......++.+.+.+.+-++.++.+.+.| ..|||+=+-||-. ...+++.|.+++++.+
T Consensus 93 -------~~~~~~~~~~~~~~~~~~~~~v~~~~NH-------PSIi~W~~gNE~~---------~~~~~~~l~~~~k~~D 149 (298)
T PF02836_consen 93 -------CNYDADDPEFRENAEQELREMVRRDRNH-------PSIIMWSLGNESD---------YREFLKELYDLVKKLD 149 (298)
T ss_dssp -------TSCTTTSGGHHHHHHHHHHHHHHHHTT--------TTEEEEEEEESSH---------HHHHHHHHHHHHHHH-
T ss_pred -------cccCCCCHHHHHHHHHHHHHHHHcCcCc-------CchheeecCccCc---------cccchhHHHHHHHhcC
Confidence 1234568889888888888888888755 4899999999982 4678889999999988
Q ss_pred CCcceeeecCC-C-CCCccc-cCCCCccc-----cccC----C--CCCCCCceeeeccccccC
Q 005690 169 TGVPWVMCKQD-D-APDPVI-NTCNGFYC-----EKFV----P--NQNYKPKMWTEAWTGWFT 217 (683)
Q Consensus 169 ~~vp~~~~~~~-~-~~~~~~-~t~~g~~~-----~~~~----~--~~p~~P~~~~E~~~Gwf~ 217 (683)
..-|....... . ..+... +...+.+. +.+. . ..+++|++.+||-...+.
T Consensus 150 ptRpv~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~kP~i~sEyg~~~~~ 212 (298)
T PF02836_consen 150 PTRPVTYASNGWDPYVDDIIFDIYSGWYNGYGDPEDFEKYLEDWYKYPDKPIIISEYGADAYN 212 (298)
T ss_dssp TTSEEEEETGTSGGSTSSCEECSETTTSSSCCHHHHHHHHHHHHHHHCTS-EEEEEESEBBSS
T ss_pred CCCceeecccccccccccccccccccccCCcccHHHHHHHHHhccccCCCCeEehhccccccc
Confidence 88776544431 0 111111 11111110 1111 1 357899999999655444
No 10
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=98.15 E-value=1.3e-05 Score=77.76 Aligned_cols=99 Identities=25% Similarity=0.372 Sum_probs=69.2
Q ss_pred CCCcceEEEEEEecCCCCcccccCCCCCceEecCcceEEEEEECCEEEEEEEcccCCCeeEEeeeeecCCCc-cEEEEEE
Q 005690 421 ADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGV-NKISLLS 499 (683)
Q Consensus 421 ~d~~Gyl~Yrt~i~~~~~~~~~~~g~~~~L~i~~~~d~a~vfvng~~~G~~~~~~~~~~~~~~~~~~l~~g~-~~L~ILv 499 (683)
....|+.|||++|.++... .+....|.+.++.+.+.|||||+++|...+.. ..+.+.++..|+.|. |+|.|.|
T Consensus 64 ~~~~~~~wYr~~f~lp~~~----~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~--~~~~~dIt~~l~~g~~N~l~V~v 137 (167)
T PF02837_consen 64 WDYSGYAWYRRTFTLPADW----KGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGY--TPFEFDITDYLKPGEENTLAVRV 137 (167)
T ss_dssp STCCSEEEEEEEEEESGGG----TTSEEEEEESEEESEEEEEETTEEEEEEESTT--S-EEEECGGGSSSEEEEEEEEEE
T ss_pred cccCceEEEEEEEEeCchh----cCceEEEEeccceEeeEEEeCCeEEeeeCCCc--CCeEEeChhhccCCCCEEEEEEE
Confidence 4578999999999886432 23445688899999999999999999987643 345555554578887 9999999
Q ss_pred ecCCcccccccc-cccccceeccEEEc
Q 005690 500 TSVGLPNVGTHF-EKWNAGVLGPVTLK 525 (683)
Q Consensus 500 en~Gr~NyG~~~-~~~~kGI~g~V~l~ 525 (683)
.+.....+-+.+ .....||.++|.|-
T Consensus 138 ~~~~~~~~~~~~~~~~~~GI~r~V~L~ 164 (167)
T PF02837_consen 138 DNWPDGSTIPGFDYFNYAGIWRPVWLE 164 (167)
T ss_dssp ESSSGGGCGBSSSEEE--EEESEEEEE
T ss_pred eecCCCceeecCcCCccCccccEEEEE
Confidence 865543321111 13578999998873
No 11
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.02 E-value=0.0003 Score=82.40 Aligned_cols=131 Identities=15% Similarity=0.079 Sum_probs=86.7
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEEeecCceeccccCCCCCCccc
Q 005690 11 IWLQMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWL 90 (683)
Q Consensus 11 ~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~WL 90 (683)
.+++.|+.+|+.||++|+|+|++- |-|. =.+|+++|-++||+|+--.. .-|+..|+
T Consensus 310 ~~~~~~~~d~~l~K~~G~N~vR~s-----h~p~-----------~~~~~~~cD~~GllV~~E~p--------~~~~~~~~ 365 (604)
T PRK10150 310 LDEVLNVHDHNLMKWIGANSFRTS-----HYPY-----------SEEMLDLADRHGIVVIDETP--------AVGLNLSF 365 (604)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEec-----cCCC-----------CHHHHHHHHhcCcEEEEecc--------cccccccc
Confidence 567889999999999999999992 4432 13899999999999997642 11222222
Q ss_pred c--------ccCCeEeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccCCCccccCCCCcHHHHHHHHH
Q 005690 91 K--------YVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQ 162 (683)
Q Consensus 91 ~--------~~p~~~~Rt~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~ 162 (683)
. ..+....-..+|.+.++..+-++.++.+.+ |...|||+-|-||-... ......|++.|.+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~-------NHPSIi~Ws~gNE~~~~----~~~~~~~~~~l~~ 434 (604)
T PRK10150 366 GAGLEAGNKPKETYSEEAVNGETQQAHLQAIRELIARDK-------NHPSVVMWSIANEPASR----EQGAREYFAPLAE 434 (604)
T ss_pred cccccccccccccccccccchhHHHHHHHHHHHHHHhcc-------CCceEEEEeeccCCCcc----chhHHHHHHHHHH
Confidence 1 011111112345666666655666655555 45699999999997532 1224578888889
Q ss_pred HHhhCCCCcceeee
Q 005690 163 MAVGLNTGVPWVMC 176 (683)
Q Consensus 163 ~~~~~g~~vp~~~~ 176 (683)
.+++++..-|...+
T Consensus 435 ~~k~~DptR~vt~~ 448 (604)
T PRK10150 435 LTRKLDPTRPVTCV 448 (604)
T ss_pred HHHhhCCCCceEEE
Confidence 99998877776544
No 12
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.99 E-value=1.8e-05 Score=82.60 Aligned_cols=117 Identities=20% Similarity=0.321 Sum_probs=87.6
Q ss_pred CCccCCcCCeeeeccchhHHHHHHHHHHcCcEEEeecCceeccccCCCCCCccccccCCeEeecCChhhHHHHHHHHHHH
Q 005690 37 WNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKI 116 (683)
Q Consensus 37 Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~WL~~~p~~~~Rt~~~~y~~~~~~~~~~l 116 (683)
|...||++|+|||+ .++++++.|+++||.| |..+.+ |.. ..|.|+...+ .+..++++.+|++.+
T Consensus 3 W~~~ep~~G~~n~~---~~D~~~~~a~~~gi~v--~gH~l~---W~~-~~P~W~~~~~-------~~~~~~~~~~~i~~v 66 (254)
T smart00633 3 WDSTEPSRGQFNFS---GADAIVNFAKENGIKV--RGHTLV---WHS-QTPDWVFNLS-------KETLLARLENHIKTV 66 (254)
T ss_pred cccccCCCCccChH---HHHHHHHHHHHCCCEE--EEEEEe---ecc-cCCHhhhcCC-------HHHHHHHHHHHHHHH
Confidence 89999999999999 8999999999999998 433333 533 6899997533 245578888888888
Q ss_pred HHHHhhcccccccCCceEeccccccCCCcc-------ccCCCCcHHHHHHHHHHHhhCCCCcceeeecC
Q 005690 117 VSMMKAEKLFQTQGGPIILSQIENEFGPVE-------WDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQ 178 (683)
Q Consensus 117 ~~~l~~~~~~~~~gGpII~~QiENEyg~~~-------~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~ 178 (683)
+.+++ |.|..++|=||--+.. ......+.+|+...-+.+++...++.++.++.
T Consensus 67 ~~ry~---------g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Ndy 126 (254)
T smart00633 67 VGRYK---------GKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYNDY 126 (254)
T ss_pred HHHhC---------CcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEecc
Confidence 88776 5689999999954321 00112345788888888888888888888654
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=97.61 E-value=5.8e-05 Score=84.74 Aligned_cols=97 Identities=13% Similarity=0.131 Sum_probs=78.5
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCc-CCeeeeccchhHHHHHHHHHHcCcEEEeecCceeccccCCCCCCccccc
Q 005690 14 QMWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 92 (683)
Q Consensus 14 ~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~dF~G~~dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~WL~~ 92 (683)
..|+++|+.||++|+|++++-|.|...+|. +|++|.+|....+++|+.|.++||.+|+--=. =.+|.||.+
T Consensus 54 ~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~H--------fd~P~~l~~ 125 (427)
T TIGR03356 54 HRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYH--------WDLPQALED 125 (427)
T ss_pred HhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeecc--------CCccHHHHh
Confidence 479999999999999999999999999999 78999888889999999999999998865422 248999876
Q ss_pred cCCeEeecCChhhHHHHHHHHHHHHHHHhh
Q 005690 93 VPGIEFRTDNGPFKAAMHKFTEKIVSMMKA 122 (683)
Q Consensus 93 ~p~~~~Rt~~~~y~~~~~~~~~~l~~~l~~ 122 (683)
..+- .++...++..+|.+.+++++++
T Consensus 126 ~gGw----~~~~~~~~f~~ya~~~~~~~~d 151 (427)
T TIGR03356 126 RGGW----LNRDTAEWFAEYAAVVAERLGD 151 (427)
T ss_pred cCCC----CChHHHHHHHHHHHHHHHHhCC
Confidence 5442 2355566666677777776663
No 14
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=97.54 E-value=0.00071 Score=83.64 Aligned_cols=158 Identities=21% Similarity=0.186 Sum_probs=94.9
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEEeecCceeccccCCCCCCccc
Q 005690 11 IWLQMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWL 90 (683)
Q Consensus 11 ~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~WL 90 (683)
++++.|+++|+.||++|+|+|++- |-|. =.+|+++|-+.||+|+--. |..|..|...+
T Consensus 352 ~~~e~~~~dl~lmK~~g~NavR~s-----HyP~-----------~~~fydlcDe~GllV~dE~-~~e~~g~~~~~----- 409 (1021)
T PRK10340 352 VGMDRVEKDIQLMKQHNINSVRTA-----HYPN-----------DPRFYELCDIYGLFVMAET-DVESHGFANVG----- 409 (1021)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEec-----CCCC-----------CHHHHHHHHHCCCEEEECC-cccccCccccc-----
Confidence 467899999999999999999983 4332 2389999999999999764 33332221100
Q ss_pred cccCCeEeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccCCCccccCCCCcHHHHHHHHHHHhhCCCC
Q 005690 91 KYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTG 170 (683)
Q Consensus 91 ~~~p~~~~Rt~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~ 170 (683)
+...-+++|.+.++..+=++.++.+.+ |...||||=+-||-+. +. .++.+.+.+++++..
T Consensus 410 ----~~~~~~~~p~~~~~~~~~~~~mV~Rdr-------NHPSIi~WslGNE~~~--------g~-~~~~~~~~~k~~Dpt 469 (1021)
T PRK10340 410 ----DISRITDDPQWEKVYVDRIVRHIHAQK-------NHPSIIIWSLGNESGY--------GC-NIRAMYHAAKALDDT 469 (1021)
T ss_pred ----ccccccCCHHHHHHHHHHHHHHHHhCC-------CCCEEEEEECccCccc--------cH-HHHHHHHHHHHhCCC
Confidence 001123566666554444455555544 5569999999999753 12 235677777877766
Q ss_pred cceeeecCCCC--CCccccCCCCcc--ccccCCCCCCCCceeeec
Q 005690 171 VPWVMCKQDDA--PDPVINTCNGFY--CEKFVPNQNYKPKMWTEA 211 (683)
Q Consensus 171 vp~~~~~~~~~--~~~~~~t~~g~~--~~~~~~~~p~~P~~~~E~ 211 (683)
.|. +..+... ..+++...-+.. ++.+....+++|++.+||
T Consensus 470 R~v-~~~~~~~~~~~Dv~~~~Y~~~~~~~~~~~~~~~kP~i~~Ey 513 (1021)
T PRK10340 470 RLV-HYEEDRDAEVVDVISTMYTRVELMNEFGEYPHPKPRILCEY 513 (1021)
T ss_pred ceE-EeCCCcCccccceeccccCCHHHHHHHHhCCCCCcEEEEch
Confidence 654 3333211 112222111111 122333345799999999
No 15
>PLN02161 beta-amylase
Probab=97.50 E-value=0.00033 Score=78.36 Aligned_cols=117 Identities=20% Similarity=0.338 Sum_probs=81.8
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCccCC-cCCeeeeccchhHHHHHHHHHHcCcEEEeecCceeccccCCC-----CC
Q 005690 13 LQMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYG-----GF 86 (683)
Q Consensus 13 ~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~dF~G~~dl~~fl~~a~~~GL~VilrpGPyi~aEw~~G-----G~ 86 (683)
+..-+..|+++|++|+..|.+=|-|.+.|. .|++|||+| ..++++++++.||++.+---=.-|+-- -| -|
T Consensus 116 ~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGGN-vGd~~~IpL 191 (531)
T PLN02161 116 LKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCFHSNMHL-FGGKGGISL 191 (531)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCCC-CCCccCccC
Confidence 345677899999999999999999999998 899999994 668899999999996433222444331 12 28
Q ss_pred Cccccc----cCCeEeec--------------CChh------hHHHHHHHHHHHHHHHhhcccccccCCceEeccc
Q 005690 87 PVWLKY----VPGIEFRT--------------DNGP------FKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQI 138 (683)
Q Consensus 87 P~WL~~----~p~~~~Rt--------------~~~~------y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi 138 (683)
|.|+.+ +|+|.+.. ++.+ =++..+.|++.....++ +++ |+.|.-|||
T Consensus 192 P~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~--~~~---~~~I~eI~V 262 (531)
T PLN02161 192 PLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFE--PYI---GNVIEEISI 262 (531)
T ss_pred CHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHH--HHh---cCceEEEEe
Confidence 999975 57764321 1111 12445556666666666 443 578889988
No 16
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=97.41 E-value=0.0015 Score=80.69 Aligned_cols=122 Identities=20% Similarity=0.184 Sum_probs=80.5
Q ss_pred CCCcccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEEeecCceeccccCCCCCCcc
Q 005690 10 FIWLQMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVW 89 (683)
Q Consensus 10 r~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~W 89 (683)
.++++.++++|+.||++|+|+|++ .|-|.. .+|+++|-+.||+|+--. |. |. .|-.|..
T Consensus 367 a~t~e~~~~di~lmK~~g~NaVR~-----sHyP~~-----------p~fydlcDe~GilV~dE~-~~---e~-hg~~~~~ 425 (1027)
T PRK09525 367 VMDEETMVQDILLMKQHNFNAVRC-----SHYPNH-----------PLWYELCDRYGLYVVDEA-NI---ET-HGMVPMN 425 (1027)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEe-----cCCCCC-----------HHHHHHHHHcCCEEEEec-Cc---cc-cCCcccc
Confidence 467899999999999999999999 244321 488999999999999764 21 11 1111210
Q ss_pred ccccCCeEeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccCCCccccCCCCcHHHHHHHHHHHhhCCC
Q 005690 90 LKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNT 169 (683)
Q Consensus 90 L~~~p~~~~Rt~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~ 169 (683)
.-.++|.|.+++.+=+++++.+.+ |...||||=+-||-+. + ...+.+.+.++++..
T Consensus 426 --------~~~~dp~~~~~~~~~~~~mV~Rdr-------NHPSIi~WSlgNE~~~-----g----~~~~~l~~~~k~~Dp 481 (1027)
T PRK09525 426 --------RLSDDPRWLPAMSERVTRMVQRDR-------NHPSIIIWSLGNESGH-----G----ANHDALYRWIKSNDP 481 (1027)
T ss_pred --------CCCCCHHHHHHHHHHHHHHHHhCC-------CCCEEEEEeCccCCCc-----C----hhHHHHHHHHHhhCC
Confidence 013567777665554555555555 5569999999999753 1 123456666677666
Q ss_pred Ccceeee
Q 005690 170 GVPWVMC 176 (683)
Q Consensus 170 ~vp~~~~ 176 (683)
..|....
T Consensus 482 tRpV~y~ 488 (1027)
T PRK09525 482 SRPVQYE 488 (1027)
T ss_pred CCcEEEC
Confidence 6665443
No 17
>PLN00197 beta-amylase; Provisional
Probab=97.40 E-value=0.00057 Score=77.10 Aligned_cols=115 Identities=23% Similarity=0.425 Sum_probs=81.7
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCccCC-cCCeeeeccchhHHHHHHHHHHcCcEE--EeecCceeccccCCC-----
Q 005690 13 LQMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYV--HLRIGPYVCAEWNYG----- 84 (683)
Q Consensus 13 ~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~dF~G~~dl~~fl~~a~~~GL~V--ilrpGPyi~aEw~~G----- 84 (683)
++.-+..|+++|++|+..|.+=|-|.+.|. .|++|||+| ..+++++++++||++ |+.. .-|+- +-|
T Consensus 126 ~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSF--HqCGG-NVGD~~~I 199 (573)
T PLN00197 126 RKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSF--HQCGG-NVGDSCTI 199 (573)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCcccc
Confidence 456788899999999999999999999998 899999995 667899999999996 4554 34443 122
Q ss_pred CCCccccc----cCCeEee--c------------CChhh------HHHHHHHHHHHHHHHhhcccccccCCceEeccc
Q 005690 85 GFPVWLKY----VPGIEFR--T------------DNGPF------KAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQI 138 (683)
Q Consensus 85 G~P~WL~~----~p~~~~R--t------------~~~~y------~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi 138 (683)
-||.|+.+ +|+|.+- + ++.+- ++..+.|++.....++ +++ ++.|.-|||
T Consensus 200 pLP~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~--~~l---~~~I~eI~V 272 (573)
T PLN00197 200 PLPKWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFK--HLL---GDTIVEIQV 272 (573)
T ss_pred cCCHHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHH--HHh---cCceeEEEe
Confidence 28999975 5776431 1 11111 2445556666666666 443 357989998
No 18
>PLN02803 beta-amylase
Probab=97.35 E-value=0.00081 Score=75.67 Aligned_cols=115 Identities=18% Similarity=0.389 Sum_probs=82.0
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCccCC-cCCeeeeccchhHHHHHHHHHHcCcEEE--eecCceeccccCCC-----
Q 005690 13 LQMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYVH--LRIGPYVCAEWNYG----- 84 (683)
Q Consensus 13 ~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~dF~G~~dl~~fl~~a~~~GL~Vi--lrpGPyi~aEw~~G----- 84 (683)
++.-+..|+++|++|+..|.+=|-|.+.|. .|++|||+| ..++++++++.||++. +.. .-|+- +-|
T Consensus 106 ~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~I 179 (548)
T PLN02803 106 PRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSF--HQCGG-NVGDSCSI 179 (548)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCcccc
Confidence 345677899999999999999999999998 599999995 6678999999999964 553 33443 112
Q ss_pred CCCccccc----cCCeEeec--------------CChh------hHHHHHHHHHHHHHHHhhcccccccCCceEeccc
Q 005690 85 GFPVWLKY----VPGIEFRT--------------DNGP------FKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQI 138 (683)
Q Consensus 85 G~P~WL~~----~p~~~~Rt--------------~~~~------y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi 138 (683)
-||.|+.+ +|+|.+-. ++.+ =++..+.|++.....++ +++ ||.|.-|||
T Consensus 180 pLP~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~--~~l---~~~I~eI~V 252 (548)
T PLN02803 180 PLPPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFK--DYL---GGVIAEIQV 252 (548)
T ss_pred cCCHHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHH--HHh---cCceEEEEe
Confidence 28999875 57764311 1111 12445556666666666 543 479999998
No 19
>PLN02705 beta-amylase
Probab=97.35 E-value=0.00051 Score=77.97 Aligned_cols=116 Identities=16% Similarity=0.230 Sum_probs=82.3
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCccCC-cCCeeeeccchhHHHHHHHHHHcCcEE--EeecCceeccccCCC-----
Q 005690 13 LQMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYV--HLRIGPYVCAEWNYG----- 84 (683)
Q Consensus 13 ~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~dF~G~~dl~~fl~~a~~~GL~V--ilrpGPyi~aEw~~G----- 84 (683)
++.-+..|+++|++|+..|.+=|-|.+.|. .|++|||+| ..++++++++.||++ ||.. .-|+- +-|
T Consensus 267 ~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSF--HqCGG-NVGD~~~I 340 (681)
T PLN02705 267 PEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAF--HEYGG-NASGNVMI 340 (681)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--eccCC-CCCCcccc
Confidence 456788899999999999999999999998 699999995 667899999999996 4554 44544 222
Q ss_pred CCCccccc----cCCeEee--------------cCCh------hhHHHHHHHHHHHHHHHhhcccccccCCceEeccc
Q 005690 85 GFPVWLKY----VPGIEFR--------------TDNG------PFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQI 138 (683)
Q Consensus 85 G~P~WL~~----~p~~~~R--------------t~~~------~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi 138 (683)
-||.|+.+ +|+|.+- .++. .-++....|++.....++ +++ .+|.|.-|||
T Consensus 341 PLP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~--~fl--~~g~I~eI~V 414 (681)
T PLN02705 341 SLPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFD--DLF--VEGLITAVEI 414 (681)
T ss_pred cCCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHH--Hhc--cCCceeEEEe
Confidence 28999975 5675321 1111 123445555555555666 433 3478888988
No 20
>PLN02801 beta-amylase
Probab=97.34 E-value=0.00055 Score=76.63 Aligned_cols=146 Identities=20% Similarity=0.350 Sum_probs=95.1
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCccCC-cCCeeeeccchhHHHHHHHHHHcCcEE--EeecCceeccccCCC-----
Q 005690 13 LQMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYV--HLRIGPYVCAEWNYG----- 84 (683)
Q Consensus 13 ~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~dF~G~~dl~~fl~~a~~~GL~V--ilrpGPyi~aEw~~G----- 84 (683)
++.-+..|+++|++|+..|.+-|-|.+.|. .|++|||+| ..+++++++++||++ |+.. .-|+- +-|
T Consensus 36 ~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~I 109 (517)
T PLN02801 36 EEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSF--HQCGG-NVGDAVNI 109 (517)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCcccc
Confidence 455788899999999999999999999998 699999994 667899999999996 4554 33443 112
Q ss_pred CCCccccc----cCCeEe--ecC--Chhh----------------HHHHHHHHHHHHHHHhhcccccccCCceEeccc--
Q 005690 85 GFPVWLKY----VPGIEF--RTD--NGPF----------------KAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQI-- 138 (683)
Q Consensus 85 G~P~WL~~----~p~~~~--Rt~--~~~y----------------~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi-- 138 (683)
-||.|+.+ +|+|.. |+- |..| ++..+.|++.....++ +++ .+|.|.-|||
T Consensus 110 pLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~--~~l--~~~~I~eI~VGl 185 (517)
T PLN02801 110 PIPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMA--DFL--EAGVIIDIEVGL 185 (517)
T ss_pred cCCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHH--Hhc--cCCeeEEEEEcc
Confidence 28999975 566632 110 1111 2444455555556666 432 3478999998
Q ss_pred ----cccCCCcc----ccCC-----CC-cHHHHHHHHHHHhhCC
Q 005690 139 ----ENEFGPVE----WDIG-----AP-GKAYAKWAAQMAVGLN 168 (683)
Q Consensus 139 ----ENEyg~~~----~~~~-----~~-~~~y~~~l~~~~~~~g 168 (683)
|==|=+|. +.+. .| |+--+..|++.+.+.|
T Consensus 186 GP~GELRYPSYp~~~gW~fpGiGEFQCYDky~~~~l~~aA~~~G 229 (517)
T PLN02801 186 GPAGELRYPSYPETQGWVFPGIGEFQCYDKYLKADFKEAATEAG 229 (517)
T ss_pred cccccccCCCCcCCCCCCCCCcceeeeccHHHHHHHHHHHHhcC
Confidence 43344542 1111 13 4433456677776664
No 21
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.28 E-value=0.00034 Score=76.80 Aligned_cols=114 Identities=17% Similarity=0.274 Sum_probs=75.5
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCccCCc-CCeeeeccchhHHHHHHHHHHcCcEEEeecCceeccc----cCCCCCCcc
Q 005690 15 MWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAE----WNYGGFPVW 89 (683)
Q Consensus 15 ~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~dF~G~~dl~~fl~~a~~~GL~VilrpGPyi~aE----w~~GG~P~W 89 (683)
.-+..|+++|++|+..|.+.|-|.+.|.. |++|||+ -.+++.+++++.||++.+-.-=.-|+- .-+=-||.|
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs---~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP~W 93 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWS---GYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLPSW 93 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---H---HHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-HH
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcH---HHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCCHH
Confidence 34678999999999999999999999997 9999999 577889999999999754322233421 111137999
Q ss_pred ccc---cCCeEee--c------------CChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccc
Q 005690 90 LKY---VPGIEFR--T------------DNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQI 138 (683)
Q Consensus 90 L~~---~p~~~~R--t------------~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi 138 (683)
+.. ..+|... + .... ++..+.|++.....++ .+. +.|..|||
T Consensus 94 v~~~~~~~di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~f~--~~~----~~I~~I~v 152 (402)
T PF01373_consen 94 VWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDNFS--DYL----STITEIQV 152 (402)
T ss_dssp HHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHHCH--HHH----TGEEEEEE
T ss_pred HHhccccCCcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHHHH--HHH----hhheEEEe
Confidence 974 2244221 1 1123 6777778888888887 443 68888887
No 22
>PLN02905 beta-amylase
Probab=97.25 E-value=0.00087 Score=76.39 Aligned_cols=116 Identities=17% Similarity=0.345 Sum_probs=81.2
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCccCC-cCCeeeeccchhHHHHHHHHHHcCcEE--EeecCceeccccCCC-----
Q 005690 13 LQMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYV--HLRIGPYVCAEWNYG----- 84 (683)
Q Consensus 13 ~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~dF~G~~dl~~fl~~a~~~GL~V--ilrpGPyi~aEw~~G----- 84 (683)
++.-+..|+++|++|+..|.+=|-|.+.|. .|++|||+| ..++++++++.||++ |+.. .-|+- +-|
T Consensus 285 ~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSF--HqCGG-NVGD~~~I 358 (702)
T PLN02905 285 PDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSF--HECGG-NVGDDVCI 358 (702)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCcccc
Confidence 445678899999999999999999999998 899999994 667899999999996 4554 44543 122
Q ss_pred CCCccccc----cCCeEee--------------cCCh------hhHHHHHHHHHHHHHHHhhcccccccCCceEeccc
Q 005690 85 GFPVWLKY----VPGIEFR--------------TDNG------PFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQI 138 (683)
Q Consensus 85 G~P~WL~~----~p~~~~R--------------t~~~------~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi 138 (683)
-||.|+.+ +|+|.+- .++. .-++....|++.....++ +++ .+|.|.-|||
T Consensus 359 PLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~--~fl--~~g~I~eI~V 432 (702)
T PLN02905 359 PLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFD--EFF--EDGVISMVEV 432 (702)
T ss_pred cCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHH--HHh--cCCceEEEEe
Confidence 38999975 5776431 1111 123444455555555555 432 3478988988
No 23
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=97.12 E-value=0.002 Score=68.53 Aligned_cols=129 Identities=19% Similarity=0.323 Sum_probs=97.5
Q ss_pred CCEEE--EcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEEeecCceeccccCCCCCCccccccCCeEeecCChhh
Q 005690 28 LDVIQ--TYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPF 105 (683)
Q Consensus 28 ~N~V~--~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~WL~~~p~~~~Rt~~~~y 105 (683)
+|.|. .-.=|+..||++|.|+|+ --++..+.|+++||.+ |-=+.| |-+ -.|.||..+. -+-++.
T Consensus 58 ~n~iTpenemKwe~i~p~~G~f~Fe---~AD~ia~FAr~h~m~l--hGHtLv---W~~-q~P~W~~~~e-----~~~~~~ 123 (345)
T COG3693 58 CNQITPENEMKWEAIEPERGRFNFE---AADAIANFARKHNMPL--HGHTLV---WHS-QVPDWLFGDE-----LSKEAL 123 (345)
T ss_pred hcccccccccccccccCCCCccCcc---chHHHHHHHHHcCCee--ccceee---ecc-cCCchhhccc-----cChHHH
Confidence 44443 345699999999999999 6788999999999954 433343 433 6899997643 234678
Q ss_pred HHHHHHHHHHHHHHHhhcccccccCCceEeccccccCCCcc-------ccCCCCcHHHHHHHHHHHhhCCCCcceeeecC
Q 005690 106 KAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVE-------WDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQ 178 (683)
Q Consensus 106 ~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~-------~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~ 178 (683)
++.+++++..++.+.+ |-|+.|-|=||-=.-. +..+..+.+|+++.-+.+++.+.+.-++.++.
T Consensus 124 ~~~~e~hI~tV~~rYk---------g~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~NDY 194 (345)
T COG3693 124 AKMVEEHIKTVVGRYK---------GSVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVINDY 194 (345)
T ss_pred HHHHHHHHHHHHHhcc---------CceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEeecc
Confidence 9999999999999988 4589999999963211 11224578999999999999888877888776
Q ss_pred C
Q 005690 179 D 179 (683)
Q Consensus 179 ~ 179 (683)
.
T Consensus 195 ~ 195 (345)
T COG3693 195 S 195 (345)
T ss_pred c
Confidence 3
No 24
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=97.02 E-value=0.004 Score=66.45 Aligned_cols=123 Identities=12% Similarity=0.053 Sum_probs=70.4
Q ss_pred CCCCcccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEEeecCceeccccCCCCCCc
Q 005690 9 FFIWLQMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPV 88 (683)
Q Consensus 9 ~r~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~ 88 (683)
+...++.|++++..||++|+|||++|-. +-..|=+++.++.++.|+||||-.+.
T Consensus 48 PLad~~~C~rDi~~l~~LgiNtIRVY~v-------------dp~~nHd~CM~~~~~aGIYvi~Dl~~------------- 101 (314)
T PF03198_consen 48 PLADPEACKRDIPLLKELGINTIRVYSV-------------DPSKNHDECMSAFADAGIYVILDLNT------------- 101 (314)
T ss_dssp GGG-HHHHHHHHHHHHHHT-SEEEES----------------TTS--HHHHHHHHHTT-EEEEES-B-------------
T ss_pred cccCHHHHHHhHHHHHHcCCCEEEEEEe-------------CCCCCHHHHHHHHHhCCCEEEEecCC-------------
Confidence 3456789999999999999999999842 23357889999999999999998643
Q ss_pred cccccCCeEeecCCh--hhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccCCCccccC--CCCcHHHHHHHHHHH
Q 005690 89 WLKYVPGIEFRTDNG--PFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDI--GAPGKAYAKWAAQMA 164 (683)
Q Consensus 89 WL~~~p~~~~Rt~~~--~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~--~~~~~~y~~~l~~~~ 164 (683)
|...+-..+| .|-...-.-+.++++.++.+ -+++++=+-||--.-...- ..+-|+.++-+|+-.
T Consensus 102 -----p~~sI~r~~P~~sw~~~l~~~~~~vid~fa~Y-------~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi 169 (314)
T PF03198_consen 102 -----PNGSINRSDPAPSWNTDLLDRYFAVIDAFAKY-------DNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYI 169 (314)
T ss_dssp -----TTBS--TTS------HHHHHHHHHHHHHHTT--------TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHH
T ss_pred -----CCccccCCCCcCCCCHHHHHHHHHHHHHhccC-------CceEEEEecceeecCCCCcccHHHHHHHHHHHHHHH
Confidence 2222333444 55433333344555777733 3899999999986432100 112344444455545
Q ss_pred hhCCC
Q 005690 165 VGLNT 169 (683)
Q Consensus 165 ~~~g~ 169 (683)
++.+.
T Consensus 170 ~~~~~ 174 (314)
T PF03198_consen 170 KSKGY 174 (314)
T ss_dssp HHSSS
T ss_pred HhcCC
Confidence 55444
No 25
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=96.99 E-value=0.0063 Score=73.13 Aligned_cols=103 Identities=21% Similarity=0.343 Sum_probs=75.6
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEEeecCceeccccCCCCCCcccccc
Q 005690 14 QMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYV 93 (683)
Q Consensus 14 ~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~WL~~~ 93 (683)
+.-+++|+.||++|+|+|+|- |-|+. .+|+++|-+.||+||--+ + .||- |+|
T Consensus 321 ~~~~~dl~lmk~~n~N~vRts-----HyP~~-----------~~~ydLcDelGllV~~Ea-~---~~~~--~~~------ 372 (808)
T COG3250 321 DAMERDLKLMKEANMNSVRTS-----HYPNS-----------EEFYDLCDELGLLVIDEA-M---IETH--GMP------ 372 (808)
T ss_pred HHHHHHHHHHHHcCCCEEEec-----CCCCC-----------HHHHHHHHHhCcEEEEec-c---hhhc--CCC------
Confidence 447899999999999999996 55532 579999999999999875 2 2232 222
Q ss_pred CCeEeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccCCCccccCCCCcHHHHHHHHHH
Q 005690 94 PGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQM 163 (683)
Q Consensus 94 p~~~~Rt~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~ 163 (683)
+++.|++.+..=+++++.+.+.| ..|||+=+-||-|. ++....-.+|.++.
T Consensus 373 -------~~~~~~k~~~~~i~~mver~knH-------PSIiiWs~gNE~~~-----g~~~~~~~~~~k~~ 423 (808)
T COG3250 373 -------DDPEWRKEVSEEVRRMVERDRNH-------PSIIIWSLGNESGH-----GSNHWALYRWFKAS 423 (808)
T ss_pred -------CCcchhHHHHHHHHHHHHhccCC-------CcEEEEeccccccC-----ccccHHHHHHHhhc
Confidence 67888888887777887777755 48999999999874 22334444555554
No 26
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=96.48 E-value=0.069 Score=57.09 Aligned_cols=204 Identities=20% Similarity=0.264 Sum_probs=99.5
Q ss_pred CCCcccHHHHHHHHHHCCCCEEEEccc--CCcc--------CC----cCCeeeeccc-----hhHHHHHHHHHHcCcEEE
Q 005690 10 FIWLQMWPDLIQKAKDGGLDVIQTYVF--WNGH--------EP----TQGNYYFQDR-----YDLVRFIKLVQQAGLYVH 70 (683)
Q Consensus 10 r~~~~~W~d~l~k~ka~G~N~V~~yv~--Wn~h--------Ep----~~G~~dF~G~-----~dl~~fl~~a~~~GL~Vi 70 (683)
+...+.|+.-|+..|+-|||+|++=++ |.-+ .| .++.+||+.- ..+++.|+.|.+.||.+.
T Consensus 26 ~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~ 105 (289)
T PF13204_consen 26 RLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAA 105 (289)
T ss_dssp H--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEE
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEE
Confidence 567789999999999999999998765 3322 11 2233777753 478999999999999985
Q ss_pred eec---CceeccccCCCCCCccccccCCeEeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccCCCccc
Q 005690 71 LRI---GPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEW 147 (683)
Q Consensus 71 lrp---GPyi~aEw~~GG~P~WL~~~p~~~~Rt~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~ 147 (683)
|-| +||.-+-|-.| | ..| =.+.+++|.+.|++++++.+ +|| +=|-||+ .
T Consensus 106 lv~~wg~~~~~~~Wg~~--~------~~m--------~~e~~~~Y~~yv~~Ry~~~~-------Nvi-W~l~gd~-~--- 157 (289)
T PF13204_consen 106 LVPFWGCPYVPGTWGFG--P------NIM--------PPENAERYGRYVVARYGAYP-------NVI-WILGGDY-F--- 157 (289)
T ss_dssp EESS-HHHHH---------T------TSS---------HHHHHHHHHHHHHHHTT-S-------SEE-EEEESSS-----
T ss_pred EEEEECCcccccccccc--c------cCC--------CHHHHHHHHHHHHHHHhcCC-------CCE-EEecCcc-C---
Confidence 432 33333334332 1 111 13788999999999999553 465 4488888 1
Q ss_pred cCCCCcHHHHHHHHHHHhhCCCCcceeeecCC-C--CC-----Cc-----cccCCCCcc---c-c----ccC-CCCCCCC
Q 005690 148 DIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQD-D--AP-----DP-----VINTCNGFY---C-E----KFV-PNQNYKP 205 (683)
Q Consensus 148 ~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~-~--~~-----~~-----~~~t~~g~~---~-~----~~~-~~~p~~P 205 (683)
......++.+.+.+.+++..-.- +++.-.. . .+ .+ .+.+..... + + .+. ...|.+|
T Consensus 158 -~~~~~~~~w~~~~~~i~~~dp~~-L~T~H~~~~~~~~~~~~~~~Wldf~~~Qsgh~~~~~~~~~~~~~~~~~~~~p~KP 235 (289)
T PF13204_consen 158 -DTEKTRADWDAMARGIKENDPYQ-LITIHPCGRTSSPDWFHDEPWLDFNMYQSGHNRYDQDNWYYLPEEFDYRRKPVKP 235 (289)
T ss_dssp --TTSSHHHHHHHHHHHHHH--SS--EEEEE-BTEBTHHHHTT-TT--SEEEB--S--TT--THHHH--HHHHTSSS---
T ss_pred -CCCcCHHHHHHHHHHHHhhCCCC-cEEEeCCCCCCcchhhcCCCcceEEEeecCCCcccchHHHHHhhhhhhhhCCCCC
Confidence 12456778888888777665433 3332211 0 10 00 011111000 0 0 111 4568999
Q ss_pred ceeeec-cccccCccCCCCCCCChHHHHHHHHHHHHcCC
Q 005690 206 KMWTEA-WTGWFTEFGSAVPTRPAEDLVFSVARFIQSGG 243 (683)
Q Consensus 206 ~~~~E~-~~Gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~ 243 (683)
.++.|- |.|--..+.+.....+++++...+=+-+-+|+
T Consensus 236 vin~Ep~YEg~~~~~~~~~~~~~~~dvrr~aw~svlaGa 274 (289)
T PF13204_consen 236 VINGEPCYEGIPYSRWGYNGRFSAEDVRRRAWWSVLAGA 274 (289)
T ss_dssp EEESS---BT-BTTSS-TS-B--HHHHHHHHHHHHHCT-
T ss_pred EEcCcccccCCCCCcCcccCCCCHHHHHHHHHHHHhcCC
Confidence 999995 45544333322334567777665434454565
No 27
>PRK10150 beta-D-glucuronidase; Provisional
Probab=96.42 E-value=0.015 Score=68.38 Aligned_cols=100 Identities=22% Similarity=0.216 Sum_probs=67.6
Q ss_pred CCcceEEEEEEecCCCCcccccCCCCCceEecCcceEEEEEECCEEEEEEEcccCCCeeEEeeeeecCCCc-cEEEEEEe
Q 005690 422 DASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGV-NKISLLST 500 (683)
Q Consensus 422 d~~Gyl~Yrt~i~~~~~~~~~~~g~~~~L~i~~~~d~a~vfvng~~~G~~~~~~~~~~~~~~~~~~l~~g~-~~L~ILve 500 (683)
+..|..|||++|.++... .|....|.+.++...+.|||||++||...+.. ..+.|.+...|+.|. |+|.|.|.
T Consensus 62 ~~~G~~WYrr~f~lp~~~----~gk~v~L~Fegv~~~a~V~lNG~~vg~~~~~~--~~f~~DIT~~l~~G~~n~L~V~v~ 135 (604)
T PRK10150 62 NYVGDVWYQREVFIPKGW----AGQRIVLRFGSVTHYAKVWVNGQEVMEHKGGY--TPFEADITPYVYAGKSVRITVCVN 135 (604)
T ss_pred CCcccEEEEEEEECCccc----CCCEEEEEECcccceEEEEECCEEeeeEcCCc--cceEEeCchhccCCCceEEEEEEe
Confidence 356889999999875431 24456789999999999999999999986633 344555444466675 49999997
Q ss_pred cCCccc---ccccc-------------c-ccccceeccEEEccc
Q 005690 501 SVGLPN---VGTHF-------------E-KWNAGVLGPVTLKGL 527 (683)
Q Consensus 501 n~Gr~N---yG~~~-------------~-~~~kGI~g~V~l~g~ 527 (683)
|.-+.. .|... + ....||..+|.|.-.
T Consensus 136 n~~~~~~~p~g~~~~~~~~~~k~~~~~d~~~~~GI~r~V~L~~~ 179 (604)
T PRK10150 136 NELNWQTLPPGNVIEDGNGKKKQKYNFDFFNYAGIHRPVMLYTT 179 (604)
T ss_pred cCCCcccCCCCccccCCccccccccccccccccCCCceEEEEEc
Confidence 742110 11100 0 236799999998543
No 28
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=96.30 E-value=0.0053 Score=59.39 Aligned_cols=66 Identities=29% Similarity=0.586 Sum_probs=50.3
Q ss_pred CCceEEEEEEECCCCC--CCeEEecCCC-ceEEEEEcCccccccccCCCCCCCCCCCCCCCcccccccccCCCCCeeeEe
Q 005690 573 QPMTWYKTTFNVPPGN--DPLALDMGAM-GKGMVWINGQSIGRHWPGYIGNGNCGGCNYAGTYTEKKCRTYCGKPSQRWY 649 (683)
Q Consensus 573 ~~~~fYk~~F~~~~~~--d~~~Ld~~g~-gKG~vwVNG~nlGRYW~~~~~~G~~~~~~~~g~~~~~~~~~~~g~PqqtlY 649 (683)
.+..|||.+|++|... ..++|.+.+. ....|||||+.+|+-...+ ..-+ +
T Consensus 67 ~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~--------------------------~~~~-~ 119 (167)
T PF02837_consen 67 SGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGY--------------------------TPFE-F 119 (167)
T ss_dssp CSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEESTT--------------------------S-EE-E
T ss_pred CceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCCCc--------------------------CCeE-E
Confidence 4679999999998632 3579999886 5999999999999976421 2233 5
Q ss_pred ecCcccccCCC-cEEEEE
Q 005690 650 HVPRSWLKPSG-NLLVVF 666 (683)
Q Consensus 650 hVP~~~Lk~g~-N~Ivvf 666 (683)
.|+. .|++|+ |+|.|.
T Consensus 120 dIt~-~l~~g~~N~l~V~ 136 (167)
T PF02837_consen 120 DITD-YLKPGEENTLAVR 136 (167)
T ss_dssp ECGG-GSSSEEEEEEEEE
T ss_pred eChh-hccCCCCEEEEEE
Confidence 6864 799988 998874
No 29
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=96.28 E-value=0.0013 Score=74.44 Aligned_cols=97 Identities=14% Similarity=0.194 Sum_probs=72.5
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCc--CCeeeeccchhHHHHHHHHHHcCcEEEeecCceeccccCCCCCCcccc
Q 005690 14 QMWPDLIQKAKDGGLDVIQTYVFWNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 91 (683)
Q Consensus 14 ~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~~dF~G~~dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~WL~ 91 (683)
..|+++|+.||++|+|+.++-+-|...+|. +|++|-+|....+++|+.++++||..|+-- -.-.+|.||.
T Consensus 58 ~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL--------~H~~~P~~l~ 129 (455)
T PF00232_consen 58 HRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTL--------YHFDLPLWLE 129 (455)
T ss_dssp HHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEE--------ESS--BHHHH
T ss_pred hhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeee--------eeccccccee
Confidence 469999999999999999999999999999 699999999999999999999999977653 2356899998
Q ss_pred ccCCeEeecCChhhHHHHHHHHHHHHHHHhh
Q 005690 92 YVPGIEFRTDNGPFKAAMHKFTEKIVSMMKA 122 (683)
Q Consensus 92 ~~p~~~~Rt~~~~y~~~~~~~~~~l~~~l~~ 122 (683)
+.-+- .++...+.-.+|.+.+++.+.+
T Consensus 130 ~~ggw----~~~~~~~~F~~Ya~~~~~~~gd 156 (455)
T PF00232_consen 130 DYGGW----LNRETVDWFARYAEFVFERFGD 156 (455)
T ss_dssp HHTGG----GSTHHHHHHHHHHHHHHHHHTT
T ss_pred ecccc----cCHHHHHHHHHHHHHHHHHhCC
Confidence 74332 2355566666777777777763
No 30
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=96.15 E-value=0.015 Score=64.98 Aligned_cols=114 Identities=15% Similarity=0.098 Sum_probs=68.9
Q ss_pred HHHHHHHHHCCCCEEEEcccCCccCCcC----CeeeeccchhHHHHHHHHHHcCcEEEeecCceeccccCCCCCCccccc
Q 005690 17 PDLIQKAKDGGLDVIQTYVFWNGHEPTQ----GNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 92 (683)
Q Consensus 17 ~d~l~k~ka~G~N~V~~yv~Wn~hEp~~----G~~dF~G~~dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~WL~~ 92 (683)
++.+..||.+|||+|++++.|..+++.. ...+=+--.-|++.|+.|++.||+|+|-.-=|-+. .++-=..|...
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~--~~~~~~s~~~~ 153 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGG--NNGHEHSGYTS 153 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCC--CCCcCcccccc
Confidence 8899999999999999999944446543 22211211378899999999999999873211100 00011122211
Q ss_pred cCCeEeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccCCC
Q 005690 93 VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGP 144 (683)
Q Consensus 93 ~p~~~~Rt~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~ 144 (683)
... .....+++..+-+..|+.+.+ +.-.||++|+=||--.
T Consensus 154 --~~~---~~~~~~~~~~~~w~~ia~~f~-------~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 154 --DYK---EENENVEATIDIWKFIANRFK-------NYDTVIGFELINEPNG 193 (407)
T ss_pred --ccc---ccchhHHHHHHHHHHHHHhcc-------CCCceeeeeeecCCcc
Confidence 000 022334445555555555555 3458999999999863
No 31
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=96.14 E-value=0.015 Score=63.31 Aligned_cols=104 Identities=26% Similarity=0.425 Sum_probs=64.4
Q ss_pred HHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEEeecCceeccccCCCCCCccccccCCe
Q 005690 17 PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGI 96 (683)
Q Consensus 17 ~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~WL~~~p~~ 96 (683)
+|.|+-+|+.|+|.|+.=| |+--.. .|..|.+ +..+..+.|+++||.|+|-.- |- -.|- +|+-
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv~P~~-~g~~~~~---~~~~~akrak~~Gm~vlldfH-YS---------D~Wa--DPg~ 89 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WVNPYD-GGYNDLE---DVIALAKRAKAAGMKVLLDFH-YS---------DFWA--DPGK 89 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--SS-TT-TTTTSHH---HHHHHHHHHHHTT-EEEEEE--SS---------SS----BTTB
T ss_pred CCHHHHHHhcCCCeEEEEe-ccCCcc-cccCCHH---HHHHHHHHHHHCCCeEEEeec-cc---------CCCC--CCCC
Confidence 6899999999999999988 554333 2555555 666666667889999999752 21 1121 2221
Q ss_pred E----e-ec-CChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccCC
Q 005690 97 E----F-RT-DNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFG 143 (683)
Q Consensus 97 ~----~-Rt-~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg 143 (683)
. . +. +-..-.++|..|.+.++..|++ +|=.+=||||-||..
T Consensus 90 Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~------~G~~pd~VQVGNEin 136 (332)
T PF07745_consen 90 QNKPAAWANLSFDQLAKAVYDYTKDVLQALKA------AGVTPDMVQVGNEIN 136 (332)
T ss_dssp -B--TTCTSSSHHHHHHHHHHHHHHHHHHHHH------TT--ESEEEESSSGG
T ss_pred CCCCccCCCCCHHHHHHHHHHHHHHHHHHHHH------CCCCccEEEeCcccc
Confidence 1 0 11 2245578999999999999994 455788999999974
No 32
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=96.06 E-value=0.008 Score=65.10 Aligned_cols=144 Identities=16% Similarity=0.235 Sum_probs=98.7
Q ss_pred HHHHHHHCCCCEEEEc--ccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEEeecCceeccccCCCCCCccccccCCe
Q 005690 19 LIQKAKDGGLDVIQTY--VFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGI 96 (683)
Q Consensus 19 ~l~k~ka~G~N~V~~y--v~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~WL~~~p~~ 96 (683)
..+.+-..-||.|..- .-|...||.+|+|+|+ ..+++++.|+++||.|---+ -+ |.. ..|.|+...+..
T Consensus 26 ~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~---~~D~~~~~a~~~g~~vrGH~--Lv---W~~-~~P~w~~~~~~~ 96 (320)
T PF00331_consen 26 RYRELFAKHFNSVTPENEMKWGSIEPEPGRFNFE---SADAILDWARENGIKVRGHT--LV---WHS-QTPDWVFNLANG 96 (320)
T ss_dssp HHHHHHHHH-SEEEESSTTSHHHHESBTTBEE-H---HHHHHHHHHHHTT-EEEEEE--EE---ESS-SS-HHHHTSTTS
T ss_pred HHHHHHHHhCCeeeeccccchhhhcCCCCccCcc---chhHHHHHHHhcCcceeeee--EE---Ecc-cccceeeeccCC
Confidence 3555556679999875 6799999999999999 89999999999999874221 11 433 789999874110
Q ss_pred EeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccCCCccc---------cCCCCcHHHHHHHHHHHhhC
Q 005690 97 EFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEW---------DIGAPGKAYAKWAAQMAVGL 167 (683)
Q Consensus 97 ~~Rt~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~---------~~~~~~~~y~~~l~~~~~~~ 167 (683)
. ....+...++++++++.++.++++. |.|.++-|=||-=.-.. .+...+.+|++..-+.+++.
T Consensus 97 ~-~~~~~~~~~~l~~~I~~v~~~y~~~-------g~i~~WDVvNE~i~~~~~~~~~r~~~~~~~lG~~yi~~aF~~A~~~ 168 (320)
T PF00331_consen 97 S-PDEKEELRARLENHIKTVVTRYKDK-------GRIYAWDVVNEAIDDDGNPGGLRDSPWYDALGPDYIADAFRAAREA 168 (320)
T ss_dssp S-BHHHHHHHHHHHHHHHHHHHHTTTT-------TTESEEEEEES-B-TTSSSSSBCTSHHHHHHTTCHHHHHHHHHHHH
T ss_pred C-cccHHHHHHHHHHHHHHHHhHhccc-------cceEEEEEeeecccCCCccccccCChhhhcccHhHHHHHHHHHHHh
Confidence 0 0001237888999999998887721 89999999999643211 01122457888888888888
Q ss_pred CCCcceeeecCC
Q 005690 168 NTGVPWVMCKQD 179 (683)
Q Consensus 168 g~~vp~~~~~~~ 179 (683)
..++.++.++..
T Consensus 169 ~P~a~L~~NDy~ 180 (320)
T PF00331_consen 169 DPNAKLFYNDYN 180 (320)
T ss_dssp HTTSEEEEEESS
T ss_pred CCCcEEEecccc
Confidence 888889988764
No 33
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.02 E-value=0.09 Score=51.73 Aligned_cols=135 Identities=13% Similarity=0.166 Sum_probs=76.2
Q ss_pred CCCcccHHHHHHHHHHCCCCEEEEcccCCccC-----C---cCCeeeeccchhHHHHHHHHHHcCcEEEeecCceecccc
Q 005690 10 FIWLQMWPDLIQKAKDGGLDVIQTYVFWNGHE-----P---TQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEW 81 (683)
Q Consensus 10 r~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hE-----p---~~G~~dF~G~~dl~~fl~~a~~~GL~VilrpGPyi~aEw 81 (683)
.-.++.|++.++.||++|++||=.= |...+ | .++.|.-....-|+.+|++|++.||.|++-.+-
T Consensus 16 ~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~------ 87 (166)
T PF14488_consen 16 NWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF------ 87 (166)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC------
Confidence 4578999999999999999998421 22111 1 122333334458999999999999999987532
Q ss_pred CCCCCCccccccCCeEeecCChhh-HHHHHHHHHHHHHHHhhcccccccCCceEeccccccCCCccccCCCCcHHHHHHH
Q 005690 82 NYGGFPVWLKYVPGIEFRTDNGPF-KAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWA 160 (683)
Q Consensus 82 ~~GG~P~WL~~~p~~~~Rt~~~~y-~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l 160 (683)
-|.|..+ .|+.. .+.-++..+.|..... +....=++=|=.|..... ....++.+.|
T Consensus 88 ----~~~~w~~--------~~~~~~~~~~~~v~~el~~~yg-------~h~sf~GWYip~E~~~~~----~~~~~~~~~l 144 (166)
T PF14488_consen 88 ----DPDYWDQ--------GDLDWEAERNKQVADELWQRYG-------HHPSFYGWYIPYEIDDYN----WNAPERFALL 144 (166)
T ss_pred ----Cchhhhc--------cCHHHHHHHHHHHHHHHHHHHc-------CCCCCceEEEecccCCcc----cchHHHHHHH
Confidence 2344431 22222 1122233344444333 233555666777765432 2245555555
Q ss_pred HHHHhhCCCCcceee
Q 005690 161 AQMAVGLNTGVPWVM 175 (683)
Q Consensus 161 ~~~~~~~g~~vp~~~ 175 (683)
.+.+++.--+-|...
T Consensus 145 ~~~lk~~s~~~Pv~I 159 (166)
T PF14488_consen 145 GKYLKQISPGKPVMI 159 (166)
T ss_pred HHHHHHhCCCCCeEE
Confidence 555554432444443
No 34
>PLN02998 beta-glucosidase
Probab=95.99 E-value=0.0064 Score=69.64 Aligned_cols=100 Identities=14% Similarity=0.166 Sum_probs=76.5
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCc-CCeeeeccchhHHHHHHHHHHcCcEEEeecCceeccccCCCCCCccccc
Q 005690 14 QMWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 92 (683)
Q Consensus 14 ~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~dF~G~~dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~WL~~ 92 (683)
..|+++++.||++|+|+-++-|-|...+|. .|.+|=+|...-+++|+.+.++||..++--=- | -+|.||.+
T Consensus 82 hry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H-----~---dlP~~L~~ 153 (497)
T PLN02998 82 HKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHH-----F---DLPQALED 153 (497)
T ss_pred HhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecC-----C---CCCHHHHH
Confidence 368999999999999999999999999996 57788889999999999999999987654311 2 47999976
Q ss_pred c-CCeEeecCChhhHHHHHHHHHHHHHHHh
Q 005690 93 V-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 121 (683)
Q Consensus 93 ~-p~~~~Rt~~~~y~~~~~~~~~~l~~~l~ 121 (683)
. -+-.-|..=..|.++++.-++++..+++
T Consensus 154 ~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk 183 (497)
T PLN02998 154 EYGGWLSQEIVRDFTAYADTCFKEFGDRVS 183 (497)
T ss_pred hhCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 3 4432233234566666666666666665
No 35
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=95.97 E-value=0.006 Score=69.48 Aligned_cols=96 Identities=11% Similarity=0.103 Sum_probs=70.5
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCc--CCeeeeccchhHHHHHHHHHHcCcEEEeecCceeccccCCCCCCcccc
Q 005690 14 QMWPDLIQKAKDGGLDVIQTYVFWNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 91 (683)
Q Consensus 14 ~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~~dF~G~~dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~WL~ 91 (683)
..|+++++.||++|+|+.++-+-|...+|. +++++=+|....+++|+.+.++||..++-- -.=.+|.||.
T Consensus 71 hry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL--------~H~~~P~~l~ 142 (474)
T PRK09852 71 HRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTL--------CHFDVPMHLV 142 (474)
T ss_pred hhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH
Confidence 346999999999999999999999999997 556777788899999999999999987653 1235899987
Q ss_pred cc-CCeEeecCChhhHHHHHHHHHHHHHHHh
Q 005690 92 YV-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 121 (683)
Q Consensus 92 ~~-p~~~~Rt~~~~y~~~~~~~~~~l~~~l~ 121 (683)
.. -+- .++...++-.+|.+.++++++
T Consensus 143 ~~~GGW----~~~~~~~~F~~ya~~~~~~fg 169 (474)
T PRK09852 143 TEYGSW----RNRKMVEFFSRYARTCFEAFD 169 (474)
T ss_pred HhcCCC----CCHHHHHHHHHHHHHHHHHhc
Confidence 53 332 233334444444444444444
No 36
>PLN02814 beta-glucosidase
Probab=95.92 E-value=0.0069 Score=69.47 Aligned_cols=100 Identities=16% Similarity=0.175 Sum_probs=76.0
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCc-CCeeeeccchhHHHHHHHHHHcCcEEEeecCceeccccCCCCCCccccc
Q 005690 14 QMWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 92 (683)
Q Consensus 14 ~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~dF~G~~dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~WL~~ 92 (683)
..|+++++.||++|+|+-++-|-|...+|. +|+++-+|...-+++|+.+.++|+..++--= =| -+|.||.+
T Consensus 77 hry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~-----H~---dlP~~L~~ 148 (504)
T PLN02814 77 HKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLY-----HY---DLPQSLED 148 (504)
T ss_pred HhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEec-----CC---CCCHHHHH
Confidence 368999999999999999999999999996 6788888999999999999999998766531 13 37999976
Q ss_pred c-CCeEeecCChhhHHHHHHHHHHHHHHHh
Q 005690 93 V-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 121 (683)
Q Consensus 93 ~-p~~~~Rt~~~~y~~~~~~~~~~l~~~l~ 121 (683)
. -+-.-|..-..|.++++.-++++..+++
T Consensus 149 ~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 178 (504)
T PLN02814 149 EYGGWINRKIIEDFTAFADVCFREFGEDVK 178 (504)
T ss_pred hcCCcCChhHHHHHHHHHHHHHHHhCCcCC
Confidence 3 4422222223466666666666666665
No 37
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=95.80 E-value=0.033 Score=69.20 Aligned_cols=97 Identities=19% Similarity=0.230 Sum_probs=66.0
Q ss_pred ceEEEEEEecCCCCcccccCCCCCceEecCcceEEEEEECCEEEEEEEcccCCCeeEEeeeeecCCCccEEEEEEecCCc
Q 005690 425 DYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSVGL 504 (683)
Q Consensus 425 Gyl~Yrt~i~~~~~~~~~~~g~~~~L~i~~~~d~a~vfvng~~~G~~~~~~~~~~~~~~~~~~l~~g~~~L~ILven~Gr 504 (683)
+--|||++|.++... .|....|...++...+.|||||++||...+.. ..+.|.+.-.|+.|.|+|.|.|.+...
T Consensus 109 ~~g~Yrr~F~lp~~~----~gkrv~L~FeGV~s~a~VwvNG~~VG~~~g~~--~pfefDIT~~l~~G~N~LaV~V~~~~d 182 (1021)
T PRK10340 109 PTGAYQRTFTLSDGW----QGKQTIIKFDGVETYFEVYVNGQYVGFSKGSR--LTAEFDISAMVKTGDNLLCVRVMQWAD 182 (1021)
T ss_pred CeEEEEEEEEeCccc----ccCcEEEEECccceEEEEEECCEEeccccCCC--ccEEEEcchhhCCCccEEEEEEEecCC
Confidence 567999999876432 24456789999999999999999999876533 334454443467788999999975332
Q ss_pred ccccccc-cccccceeccEEEccc
Q 005690 505 PNVGTHF-EKWNAGVLGPVTLKGL 527 (683)
Q Consensus 505 ~NyG~~~-~~~~kGI~g~V~l~g~ 527 (683)
-.|-... .-...||..+|.|--.
T Consensus 183 ~s~le~qd~w~~sGI~R~V~L~~~ 206 (1021)
T PRK10340 183 STYLEDQDMWWLAGIFRDVYLVGK 206 (1021)
T ss_pred CCccccCCccccccccceEEEEEe
Confidence 2221100 0124799988888654
No 38
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=95.77 E-value=0.011 Score=67.36 Aligned_cols=95 Identities=12% Similarity=0.101 Sum_probs=72.7
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCccCCc--CCeeeeccchhHHHHHHHHHHcCcEEEeecCceeccccCCCCCCccccc
Q 005690 15 MWPDLIQKAKDGGLDVIQTYVFWNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 92 (683)
Q Consensus 15 ~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~~dF~G~~dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~WL~~ 92 (683)
.|+++++.||++|+|+-++-|-|....|. +|+++=.|....+++|+.+.++||..++--= .=.+|.||..
T Consensus 70 ry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~--------H~dlP~~L~~ 141 (477)
T PRK15014 70 HYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLS--------HFEMPLHLVQ 141 (477)
T ss_pred ccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEee--------CCCCCHHHHH
Confidence 69999999999999999999999999997 5678888889999999999999999876531 2258999975
Q ss_pred c-CCeEeecCChhhHHHHHHHHHHHHHHHh
Q 005690 93 V-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 121 (683)
Q Consensus 93 ~-p~~~~Rt~~~~y~~~~~~~~~~l~~~l~ 121 (683)
. -+- .++...++-.+|.+.+++.++
T Consensus 142 ~yGGW----~n~~~~~~F~~Ya~~~f~~fg 167 (477)
T PRK15014 142 QYGSW----TNRKVVDFFVRFAEVVFERYK 167 (477)
T ss_pred hcCCC----CChHHHHHHHHHHHHHHHHhc
Confidence 3 332 234444555555555555554
No 39
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=95.62 E-value=0.011 Score=67.42 Aligned_cols=97 Identities=13% Similarity=0.084 Sum_probs=71.9
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCc-CCeeeeccchhHHHHHHHHHHcCcEEEeecCceeccccCCCCCCccccc
Q 005690 14 QMWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 92 (683)
Q Consensus 14 ~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~dF~G~~dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~WL~~ 92 (683)
..|+++++.||++|+|+-++-|-|...+|. .|.++=.|...-+++|+.+.++||.-++--= .=.+|.||.+
T Consensus 54 ~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~--------H~dlP~~L~~ 125 (469)
T PRK13511 54 HRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLH--------HFDTPEALHS 125 (469)
T ss_pred hhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec--------CCCCcHHHHH
Confidence 368999999999999999999999999997 5778888999999999999999998665431 1248999986
Q ss_pred cCCeEeecCChhhHHHHHHHHHHHHH
Q 005690 93 VPGIEFRTDNGPFKAAMHKFTEKIVS 118 (683)
Q Consensus 93 ~p~~~~Rt~~~~y~~~~~~~~~~l~~ 118 (683)
.-+-.-|..-..|.++++..++++..
T Consensus 126 ~GGW~n~~~v~~F~~YA~~~~~~fgd 151 (469)
T PRK13511 126 NGDWLNRENIDHFVRYAEFCFEEFPE 151 (469)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 53321121123455555555555555
No 40
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=95.62 E-value=0.014 Score=66.72 Aligned_cols=100 Identities=13% Similarity=0.089 Sum_probs=75.3
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCc--CCeeeeccchhHHHHHHHHHHcCcEEEeecCceeccccCCCCCCcccc
Q 005690 14 QMWPDLIQKAKDGGLDVIQTYVFWNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 91 (683)
Q Consensus 14 ~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~~dF~G~~dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~WL~ 91 (683)
..|+++++.||++|+|+-++-|-|...+|. +|+++=.|...-+++|+.+.++||..++--= .=-+|.||.
T Consensus 73 hry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~--------H~dlP~~L~ 144 (478)
T PRK09593 73 HHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTIT--------HFDCPMHLI 144 (478)
T ss_pred HhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec--------ccCCCHHHH
Confidence 469999999999999999999999999997 6677878889999999999999998665431 124799997
Q ss_pred cc-CCeEeecCChhhHHHHHHHHHHHHHHHh
Q 005690 92 YV-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 121 (683)
Q Consensus 92 ~~-p~~~~Rt~~~~y~~~~~~~~~~l~~~l~ 121 (683)
+. -+-.-|..=..|.++++..++++..+++
T Consensus 145 ~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk 175 (478)
T PRK09593 145 EEYGGWRNRKMVGFYERLCRTLFTRYKGLVK 175 (478)
T ss_pred hhcCCCCChHHHHHHHHHHHHHHHHhcCcCC
Confidence 53 4432222223566666666666666665
No 41
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=95.59 E-value=0.013 Score=66.79 Aligned_cols=103 Identities=12% Similarity=0.106 Sum_probs=74.7
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCc-CCeeeeccchhHHHHHHHHHHcCcEEEeecCceeccccCCCCCCccccc
Q 005690 14 QMWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 92 (683)
Q Consensus 14 ~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~dF~G~~dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~WL~~ 92 (683)
..|+++++.||++|+|+-++-|-|...+|. +|+++=+|...-+++|+.+.++||..++--=- | -+|.||.+
T Consensus 53 hry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H-----~---dlP~~L~~ 124 (467)
T TIGR01233 53 HKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHH-----F---DTPEALHS 124 (467)
T ss_pred hhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccC-----C---CCcHHHHH
Confidence 468999999999999999999999999996 57777788899999999999999997765421 2 48999976
Q ss_pred cCCeEeecCChhhHHHHHHHHHHHHHHHhhcccccc
Q 005690 93 VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQT 128 (683)
Q Consensus 93 ~p~~~~Rt~~~~y~~~~~~~~~~l~~~l~~~~~~~~ 128 (683)
.-+- .++...++-.+|.+.+++.+++-++.++
T Consensus 125 ~GGW----~n~~~v~~F~~YA~~~f~~fgdVk~WiT 156 (467)
T TIGR01233 125 NGDF----LNRENIEHFIDYAAFCFEEFPEVNYWTT 156 (467)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 5442 2333334444444444444443344444
No 42
>PLN02849 beta-glucosidase
Probab=95.58 E-value=0.012 Score=67.62 Aligned_cols=100 Identities=17% Similarity=0.203 Sum_probs=75.3
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCcC-CeeeeccchhHHHHHHHHHHcCcEEEeecCceeccccCCCCCCccccc
Q 005690 14 QMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQ-GNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 92 (683)
Q Consensus 14 ~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~-G~~dF~G~~dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~WL~~ 92 (683)
..|+++++.||++|+|+-++-|-|...+|.. |+++=.|...-+++|+.+.++||.-++--=- | -+|.||.+
T Consensus 79 hrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H-----~---dlP~~L~~ 150 (503)
T PLN02849 79 HKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFH-----Y---DHPQYLED 150 (503)
T ss_pred HhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecC-----C---CCcHHHHH
Confidence 3589999999999999999999999999974 7788888899999999999999987654311 2 47999976
Q ss_pred c-CCeEeecCChhhHHHHHHHHHHHHHHHh
Q 005690 93 V-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 121 (683)
Q Consensus 93 ~-p~~~~Rt~~~~y~~~~~~~~~~l~~~l~ 121 (683)
. -+-.-|..-..|.++++..++++..+++
T Consensus 151 ~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk 180 (503)
T PLN02849 151 DYGGWINRRIIKDFTAYADVCFREFGNHVK 180 (503)
T ss_pred hcCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 3 4422222224566666666666666665
No 43
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=95.47 E-value=0.015 Score=66.38 Aligned_cols=99 Identities=12% Similarity=0.069 Sum_probs=74.8
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCccCCc--CCeeeeccchhHHHHHHHHHHcCcEEEeecCceeccccCCCCCCccccc
Q 005690 15 MWPDLIQKAKDGGLDVIQTYVFWNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 92 (683)
Q Consensus 15 ~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~~dF~G~~dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~WL~~ 92 (683)
.|+++++.||++|+|+-++-|-|...+|. +|+++=.|...-+++|+.+.++||.-++--=- | -+|.||..
T Consensus 68 ry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H-----~---dlP~~L~~ 139 (476)
T PRK09589 68 RYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSH-----F---EMPYHLVT 139 (476)
T ss_pred hhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecC-----C---CCCHHHHH
Confidence 49999999999999999999999999997 56678788889999999999999987655311 2 47999965
Q ss_pred c-CCeEeecCChhhHHHHHHHHHHHHHHHh
Q 005690 93 V-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 121 (683)
Q Consensus 93 ~-p~~~~Rt~~~~y~~~~~~~~~~l~~~l~ 121 (683)
. -+-.-|..-..|.++++.-++++..+++
T Consensus 140 ~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 169 (476)
T PRK09589 140 EYGGWRNRKLIDFFVRFAEVVFTRYKDKVK 169 (476)
T ss_pred hcCCcCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 3 4432232224566666666666666665
No 44
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=95.34 E-value=0.061 Score=66.90 Aligned_cols=98 Identities=15% Similarity=0.129 Sum_probs=64.0
Q ss_pred cceEEEEEEecCCCCcccccCCC-CCceEecCcceEEEEEECCEEEEEEEcccCCCeeEEeeeeecCCCccEEEEEEecC
Q 005690 424 SDYLWYMTDVNIDSNEGFLKNGQ-DPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSV 502 (683)
Q Consensus 424 ~Gyl~Yrt~i~~~~~~~~~~~g~-~~~L~i~~~~d~a~vfvng~~~G~~~~~~~~~~~~~~~~~~l~~g~~~L~ILven~ 502 (683)
.+-.|||++|.++... .+. ...|...++...+.|||||+++|...+.. ..+.|.+.-.|+.|.|+|.|.|..-
T Consensus 119 n~~gwYrr~F~vp~~w----~~~~rv~L~FeGV~~~a~VwvNG~~VG~~~g~~--~pfefDIT~~l~~G~N~L~V~V~~~ 192 (1027)
T PRK09525 119 NPTGCYSLTFTVDESW----LQSGQTRIIFDGVNSAFHLWCNGRWVGYSQDSR--LPAEFDLSPFLRAGENRLAVMVLRW 192 (1027)
T ss_pred CCeEEEEEEEEeChhh----cCCCeEEEEECeeccEEEEEECCEEEEeecCCC--ceEEEEChhhhcCCccEEEEEEEec
Confidence 3578999999876431 122 35788999999999999999999876532 3345554444778889999988432
Q ss_pred Cccccccccc-ccccceeccEEEccc
Q 005690 503 GLPNVGTHFE-KWNAGVLGPVTLKGL 527 (683)
Q Consensus 503 Gr~NyG~~~~-~~~kGI~g~V~l~g~ 527 (683)
-.-+|-...+ -...||..+|.|--.
T Consensus 193 sdgs~~e~qd~w~~sGI~R~V~L~~~ 218 (1027)
T PRK09525 193 SDGSYLEDQDMWRMSGIFRDVSLLHK 218 (1027)
T ss_pred CCCCccccCCceeeccccceEEEEEc
Confidence 1111211000 124699998988543
No 45
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.97 E-value=0.1 Score=55.19 Aligned_cols=120 Identities=24% Similarity=0.329 Sum_probs=79.0
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHH---cCcEEEeecCceeccccCCCCCCccc
Q 005690 14 QMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQ---AGLYVHLRIGPYVCAEWNYGGFPVWL 90 (683)
Q Consensus 14 ~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~---~GL~VilrpGPyi~aEw~~GG~P~WL 90 (683)
..=.|.|+-+|++|+|.|+.-| ||..--.-|.=-=.|+.|+.+.|++|+. .||+|++..= +-.|.
T Consensus 63 g~~qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFH-----------YSDfw 130 (403)
T COG3867 63 GVRQDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFH-----------YSDFW 130 (403)
T ss_pred ChHHHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeecc-----------chhhc
Confidence 3447899999999999999865 6665444454334577899999988854 6999999851 11222
Q ss_pred cc-----cCCeEeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccCC-CccccCCC
Q 005690 91 KY-----VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFG-PVEWDIGA 151 (683)
Q Consensus 91 ~~-----~p~~~~Rt~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg-~~~~~~~~ 151 (683)
.+ .|....--+-..-.+++-.|.+..+..++++ |=-+=||||-||-. .+.+..++
T Consensus 131 aDPakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~e------Gi~pdmVQVGNEtn~gflwp~Ge 191 (403)
T COG3867 131 ADPAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKE------GILPDMVQVGNETNGGFLWPDGE 191 (403)
T ss_pred cChhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHc------CCCccceEeccccCCceeccCCC
Confidence 11 1211111222344678888999999988844 44667999999974 34343343
No 46
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=94.37 E-value=0.25 Score=46.83 Aligned_cols=98 Identities=13% Similarity=0.150 Sum_probs=63.1
Q ss_pred HHHHHHHHCCCCEEEEccc----C-----CccCCcCCeeeeccchhHHHHHHHHHHcCcEEEeecCceeccccCCCCCCc
Q 005690 18 DLIQKAKDGGLDVIQTYVF----W-----NGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPV 88 (683)
Q Consensus 18 d~l~k~ka~G~N~V~~yv~----W-----n~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~ 88 (683)
+-++.+|++|+|+|.++.- | .+|.+.|+- ++.-|.+++++|++.||.|++|...- --|+..---|.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L----~~Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPe 78 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL----KRDLLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC----CcCHHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCc
Confidence 3467889999999988542 2 334444543 12256899999999999999997654 33444445699
Q ss_pred cccccCCeE-------------eecCChhhHHHHHHHHHHHHHHH
Q 005690 89 WLKYVPGIE-------------FRTDNGPFKAAMHKFTEKIVSMM 120 (683)
Q Consensus 89 WL~~~p~~~-------------~Rt~~~~y~~~~~~~~~~l~~~l 120 (683)
|+..+++-+ .-+.|.+|++.+.+-+++|+...
T Consensus 79 W~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 79 WFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY 123 (132)
T ss_pred eeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC
Confidence 997654321 11234567776666666655443
No 47
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=93.88 E-value=0.21 Score=53.95 Aligned_cols=118 Identities=17% Similarity=0.239 Sum_probs=72.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcc-------------cCCccCC-cCCe-eeeccchhHHHHHHHHHHcCcEEEeecCce
Q 005690 12 WLQMWPDLIQKAKDGGLDVIQTYV-------------FWNGHEP-TQGN-YYFQDRYDLVRFIKLVQQAGLYVHLRIGPY 76 (683)
Q Consensus 12 ~~~~W~d~l~k~ka~G~N~V~~yv-------------~Wn~hEp-~~G~-~dF~G~~dl~~fl~~a~~~GL~VilrpGPy 76 (683)
.++.-++.|++++++|||+|-.=| +|.---+ .+|. -.|+ -|..+|+.|++.||.|..+. .+
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~D---pL~~~I~eaHkrGlevHAW~-~~ 92 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFD---PLEFMIEEAHKRGLEVHAWF-RV 92 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCcc---HHHHHHHHHHHcCCEEEEEE-Ee
Confidence 567788999999999999996544 3432111 1121 0133 79999999999999998765 11
Q ss_pred eccccCC----CCCCcccc-ccCCeEeec----CChhh----HHHHHHHHHHHHHHHhhcccccccCCceEeccccc
Q 005690 77 VCAEWNY----GGFPVWLK-YVPGIEFRT----DNGPF----KAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIEN 140 (683)
Q Consensus 77 i~aEw~~----GG~P~WL~-~~p~~~~Rt----~~~~y----~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiEN 140 (683)
-...-.. -.-|.|+. +.++..... .+..| ..+|+.|+..++..|.+ .+ +|=++|++-
T Consensus 93 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~-~Y------dvDGIhlDd 162 (311)
T PF02638_consen 93 GFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVK-NY------DVDGIHLDD 162 (311)
T ss_pred ecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHh-cC------CCCeEEecc
Confidence 1110011 12478875 455543332 11122 47888888888777652 22 577888873
No 48
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=93.31 E-value=0.087 Score=59.35 Aligned_cols=96 Identities=18% Similarity=0.300 Sum_probs=70.6
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCcCCe--eeeccchhHHHHHHHHHHcCcEEEeecCceeccccCCCCCCcccc
Q 005690 14 QMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGN--YYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 91 (683)
Q Consensus 14 ~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~--~dF~G~~dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~WL~ 91 (683)
..++++++.||+||+|+.++-|-|...-|..+. .+=.|....++.++.|.++|+.-++--=- | -+|.||.
T Consensus 59 hrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~H-----f---d~P~~L~ 130 (460)
T COG2723 59 HRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYH-----F---DLPLWLQ 130 (460)
T ss_pred hhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecc-----c---CCcHHHh
Confidence 358999999999999999999999999997655 77778889999999999999997765422 2 3699998
Q ss_pred cc-CCeEeecCChhhHHHHHHHHHHHHHHHh
Q 005690 92 YV-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 121 (683)
Q Consensus 92 ~~-p~~~~Rt~~~~y~~~~~~~~~~l~~~l~ 121 (683)
+. -+-.-|.. .++-.+|.+.++.+++
T Consensus 131 ~~ygGW~nR~~----i~~F~~ya~~vf~~f~ 157 (460)
T COG2723 131 KPYGGWENRET----VDAFARYAATVFERFG 157 (460)
T ss_pred hccCCccCHHH----HHHHHHHHHHHHHHhc
Confidence 75 34322322 3344444444444444
No 49
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=92.02 E-value=2.2 Score=50.40 Aligned_cols=53 Identities=23% Similarity=0.192 Sum_probs=38.1
Q ss_pred HHHHHCCCCEEEE-cccCCccC----CcCC-----eeeeccchhHHHHHHHHHHcCcEEEeec
Q 005690 21 QKAKDGGLDVIQT-YVFWNGHE----PTQG-----NYYFQDRYDLVRFIKLVQQAGLYVHLRI 73 (683)
Q Consensus 21 ~k~ka~G~N~V~~-yv~Wn~hE----p~~G-----~~dF~G~~dl~~fl~~a~~~GL~Vilrp 73 (683)
.-+|++|+|+|.. .|+..-.. -.+- .-.|.+..||.+|++.|+++||.|||-.
T Consensus 164 dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~ 226 (613)
T TIGR01515 164 PYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDW 226 (613)
T ss_pred HHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 6679999999998 67643211 1110 1135556799999999999999999873
No 50
>smart00642 Aamy Alpha-amylase domain.
Probab=91.91 E-value=0.42 Score=46.93 Aligned_cols=60 Identities=17% Similarity=0.190 Sum_probs=42.1
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCcc-------CCcCCee-----eeccchhHHHHHHHHHHcCcEEEeecCc
Q 005690 16 WPDLIQKAKDGGLDVIQTYVFWNGH-------EPTQGNY-----YFQDRYDLVRFIKLVQQAGLYVHLRIGP 75 (683)
Q Consensus 16 W~d~l~k~ka~G~N~V~~yv~Wn~h-------Ep~~G~~-----dF~G~~dl~~fl~~a~~~GL~VilrpGP 75 (683)
+.+.|.-+|++|+|+|.+-=++... .-.+..| .|....+|.+|++.|+++||.||+-.=|
T Consensus 21 i~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~ 92 (166)
T smart00642 21 IIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVI 92 (166)
T ss_pred HHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 4556666999999999874332222 1122222 4556689999999999999999988644
No 51
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=90.96 E-value=3.7 Score=43.18 Aligned_cols=132 Identities=15% Similarity=0.181 Sum_probs=76.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEE-eecCceeccccCCCCCCccc
Q 005690 12 WLQMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCAEWNYGGFPVWL 90 (683)
Q Consensus 12 ~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~Vi-lrpGPyi~aEw~~GG~P~WL 90 (683)
+..-|++.|+.++++|++.|+.-+ +..| ..+...+++ ..++.++.+++++.||.|. +.+++ .+.+|
T Consensus 14 ~~~~~~e~l~~~~~~G~~~VEl~~-~~~~-~~~~~~~~~-~~~~~~~~~~l~~~gl~i~~~~~~~-------~~~~~--- 80 (279)
T TIGR00542 14 KGECWLERLQLAKTCGFDFVEMSV-DETD-DRLSRLDWS-REQRLALVNAIIETGVRIPSMCLSA-------HRRFP--- 80 (279)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEec-CCcc-chhhccCCC-HHHHHHHHHHHHHcCCCceeeecCC-------CccCc---
Confidence 357899999999999999999943 2222 223444554 3578899999999999975 44432 11111
Q ss_pred cccCCeEeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccCCCccccCCC---CcHHHHHHHHHHHhhC
Q 005690 91 KYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGA---PGKAYAKWAAQMAVGL 167 (683)
Q Consensus 91 ~~~p~~~~Rt~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~---~~~~y~~~l~~~~~~~ 167 (683)
+-..|+.-+++..+.+++.++..+ .+ |.++|.+- ..++. ....... .-.+.++.+.+.+++.
T Consensus 81 -------l~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~-~~~~~-~~~~~~~~~~~~~~~l~~l~~~A~~~ 145 (279)
T TIGR00542 81 -------LGSKDKAVRQQGLEIMEKAIQLAR--DL----GIRTIQLA-GYDVY-YEEHDEETRRRFREGLKEAVELAARA 145 (279)
T ss_pred -------CCCcCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEec-Ccccc-cCcCCHHHHHHHHHHHHHHHHHHHHc
Confidence 112245555666667777777777 33 56777552 11110 0000000 0124556666677777
Q ss_pred CCCc
Q 005690 168 NTGV 171 (683)
Q Consensus 168 g~~v 171 (683)
|+.+
T Consensus 146 Gv~l 149 (279)
T TIGR00542 146 QVTL 149 (279)
T ss_pred CCEE
Confidence 7754
No 52
>PRK09936 hypothetical protein; Provisional
Probab=90.35 E-value=0.49 Score=50.33 Aligned_cols=57 Identities=23% Similarity=0.293 Sum_probs=46.3
Q ss_pred CCCcccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccc-hhHHHHHHHHHHcCcEEEee
Q 005690 10 FIWLQMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR-YDLVRFIKLVQQAGLYVHLR 72 (683)
Q Consensus 10 r~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~-~dl~~fl~~a~~~GL~Vilr 72 (683)
+.+++.|+++++.+|+.||+|+- |-|..--.. ||.+. ..|.+.++.|++.||.|++-
T Consensus 34 ~~~~~qWq~~~~~~~~~G~~tLi--vQWt~yG~~----~fg~~~g~La~~l~~A~~~Gl~v~vG 91 (296)
T PRK09936 34 QVTDTQWQGLWSQLRLQGFDTLV--VQWTRYGDA----DFGGQRGWLAKRLAAAQQAGLKLVVG 91 (296)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEE--EEeeeccCC----CcccchHHHHHHHHHHHHcCCEEEEc
Confidence 56789999999999999999874 456544111 88764 58999999999999999874
No 53
>PRK05402 glycogen branching enzyme; Provisional
Probab=89.55 E-value=5 Score=48.52 Aligned_cols=52 Identities=21% Similarity=0.233 Sum_probs=36.5
Q ss_pred HHHHHCCCCEEEE-cccC----CccCCcCCee-----eeccchhHHHHHHHHHHcCcEEEee
Q 005690 21 QKAKDGGLDVIQT-YVFW----NGHEPTQGNY-----YFQDRYDLVRFIKLVQQAGLYVHLR 72 (683)
Q Consensus 21 ~k~ka~G~N~V~~-yv~W----n~hEp~~G~~-----dF~G~~dl~~fl~~a~~~GL~Vilr 72 (683)
.-+|++|+|+|.. .|+= ..|--.+..| .|.+..||.+|++.|+++||.|||-
T Consensus 273 ~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD 334 (726)
T PRK05402 273 PYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILD 334 (726)
T ss_pred HHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 6669999999996 4531 0111111111 2455689999999999999999987
No 54
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=88.92 E-value=0.9 Score=54.62 Aligned_cols=71 Identities=15% Similarity=0.076 Sum_probs=48.7
Q ss_pred ceecccCCCC------cccHHHHHHHHHHCCCCEEEE-ccc-------CCccCCcCC--eeeeccchhHHHHHHHHHHcC
Q 005690 3 SFYFSFFFIW------LQMWPDLIQKAKDGGLDVIQT-YVF-------WNGHEPTQG--NYYFQDRYDLVRFIKLVQQAG 66 (683)
Q Consensus 3 e~~~~~~r~~------~~~W~d~l~k~ka~G~N~V~~-yv~-------Wn~hEp~~G--~~dF~G~~dl~~fl~~a~~~G 66 (683)
|+|...+... .+.|++.|..+|++|+|+|+. .|+ |.++-...= .-.|....||.+|++.|+++|
T Consensus 234 E~Hvg~~~~~~~~gty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd~aH~~G 313 (758)
T PLN02447 234 EAHVGMSSEEPKVNSYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLG 313 (758)
T ss_pred EEeCCcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHHHHHHHHCC
Confidence 5665544322 245888999999999999986 232 444321100 113555679999999999999
Q ss_pred cEEEeec
Q 005690 67 LYVHLRI 73 (683)
Q Consensus 67 L~Vilrp 73 (683)
|.|||-.
T Consensus 314 I~VilDv 320 (758)
T PLN02447 314 LRVLMDV 320 (758)
T ss_pred CEEEEEe
Confidence 9999874
No 55
>PRK14706 glycogen branching enzyme; Provisional
Probab=88.50 E-value=6.8 Score=46.64 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=36.2
Q ss_pred HHHHHCCCCEEEE-ccc-------CCccCCc--CCeeeeccchhHHHHHHHHHHcCcEEEeec
Q 005690 21 QKAKDGGLDVIQT-YVF-------WNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 73 (683)
Q Consensus 21 ~k~ka~G~N~V~~-yv~-------Wn~hEp~--~G~~dF~G~~dl~~fl~~a~~~GL~Vilrp 73 (683)
.-+|++|+|+|+. .|. |.+.-.. .=.-.|....||.+|++.|+++||.|||-.
T Consensus 175 ~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 175 EYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred HHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 5689999999995 331 4332110 001123456799999999999999999873
No 56
>PRK12568 glycogen branching enzyme; Provisional
Probab=86.48 E-value=13 Score=44.91 Aligned_cols=69 Identities=20% Similarity=0.277 Sum_probs=45.4
Q ss_pred ceecccCCCCcc----cHH----HHHHHHHHCCCCEEEE-ccc-------CCccCCcCCee----eeccchhHHHHHHHH
Q 005690 3 SFYFSFFFIWLQ----MWP----DLIQKAKDGGLDVIQT-YVF-------WNGHEPTQGNY----YFQDRYDLVRFIKLV 62 (683)
Q Consensus 3 e~~~~~~r~~~~----~W~----d~l~k~ka~G~N~V~~-yv~-------Wn~hEp~~G~~----dF~G~~dl~~fl~~a 62 (683)
|+|.--|+...+ .|+ +.|.-+|++|+|+|+. .|+ |.+.-. |-| .|....+|.+|++.|
T Consensus 251 EvHvgsf~~~~~~~~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~--~~~a~~~~~G~~~dfk~lV~~~ 328 (730)
T PRK12568 251 EVHAASWRRDGHNQPLDWPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPL--GLYAPTARHGSPDGFAQFVDAC 328 (730)
T ss_pred EEEhHHhcCCCCCCCCCHHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCC--cCCccCcccCCHHHHHHHHHHH
Confidence 566655554221 233 3357789999999986 342 433210 111 355567999999999
Q ss_pred HHcCcEEEeec
Q 005690 63 QQAGLYVHLRI 73 (683)
Q Consensus 63 ~~~GL~Vilrp 73 (683)
+++||.|||-.
T Consensus 329 H~~Gi~VIlD~ 339 (730)
T PRK12568 329 HRAGIGVILDW 339 (730)
T ss_pred HHCCCEEEEEe
Confidence 99999999874
No 57
>PRK01060 endonuclease IV; Provisional
Probab=85.76 E-value=13 Score=38.93 Aligned_cols=96 Identities=14% Similarity=0.174 Sum_probs=61.0
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEE--EeecCceeccccCCCCCCcccc
Q 005690 14 QMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV--HLRIGPYVCAEWNYGGFPVWLK 91 (683)
Q Consensus 14 ~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~V--ilrpGPyi~aEw~~GG~P~WL~ 91 (683)
.-+++.|++++++|++.|+..+. +-|.-..+.++- .++.++-+++++.||.+ +.--+||.
T Consensus 12 ~~~~~~l~~~~~~G~d~vEl~~~-~p~~~~~~~~~~---~~~~~lk~~~~~~gl~~~~~~~h~~~~-------------- 73 (281)
T PRK01060 12 GGLEGAVAEAAEIGANAFMIFTG-NPQQWKRKPLEE---LNIEAFKAACEKYGISPEDILVHAPYL-------------- 73 (281)
T ss_pred CCHHHHHHHHHHcCCCEEEEECC-CCCCCcCCCCCH---HHHHHHHHHHHHcCCCCCceEEecceE--------------
Confidence 44899999999999999998653 112222222222 36888999999999973 21133432
Q ss_pred ccCCeEeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEecc
Q 005690 92 YVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQ 137 (683)
Q Consensus 92 ~~p~~~~Rt~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 137 (683)
+.+-+.|+..+++..+.+++.++..+ .+ |-++|-+.
T Consensus 74 ----~nl~~~d~~~r~~s~~~~~~~i~~A~--~l----ga~~vv~h 109 (281)
T PRK01060 74 ----INLGNPNKEILEKSRDFLIQEIERCA--AL----GAKLLVFH 109 (281)
T ss_pred ----ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 11234466777777777777777766 33 44555554
No 58
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=85.58 E-value=7.6 Score=42.58 Aligned_cols=139 Identities=14% Similarity=0.199 Sum_probs=93.5
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHH---HcCcEEEeecCceeccccCCCCCC
Q 005690 11 IWLQMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQ---QAGLYVHLRIGPYVCAEWNYGGFP 87 (683)
Q Consensus 11 ~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~---~~GL~VilrpGPyi~aEw~~GG~P 87 (683)
..|+..+.-++.+|+.|++.-..|-.| |.|.+-|++-++..- +.+|...|+ +.+-.|..
T Consensus 55 ~~p~v~~~Q~~lA~~~GI~gF~~~~Yw-----------f~gk~lLe~p~~~~l~~~~~d~pFcl~---WAN~~w~~---- 116 (345)
T PF14307_consen 55 RDPEVMEKQAELAKEYGIDGFCFYHYW-----------FNGKRLLEKPLENLLASKEPDFPFCLC---WANENWTR---- 116 (345)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEeee-----------cCCchHHHHHHHHHHhcCCCCCcEEEE---ECCChhhh----
Confidence 467889999999999999999999888 557777776665553 345655555 33333411
Q ss_pred ccccccCCeEeecCChhhH--HHHHHHHHHHHHHHhhcccccccCCceEeccccccCCCccccCCCCcHHHHHHHHHHHh
Q 005690 88 VWLKYVPGIEFRTDNGPFK--AAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAV 165 (683)
Q Consensus 88 ~WL~~~p~~~~Rt~~~~y~--~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~ 165 (683)
.|-.....+.+- ..|. +..++.++.|++.+++..++--+|=||+++=--.+. ..-+++++.+++.++
T Consensus 117 ~w~g~~~~~l~~---q~y~~~~d~~~~~~~l~~~F~D~rYikVdGKPv~~Iy~p~~~--------pd~~~~~~~wr~~a~ 185 (345)
T PF14307_consen 117 RWDGRNNEILIE---QKYSGEDDWKEHFRYLLPYFKDPRYIKVDGKPVFLIYRPGDI--------PDIKEMIERWREEAK 185 (345)
T ss_pred ccCCCCcccccc---ccCCchhHHHHHHHHHHHHhCCCCceeECCEEEEEEECcccc--------cCHHHHHHHHHHHHH
Confidence 233222233221 1222 334778888999999877666688899998533222 235789999999999
Q ss_pred hCCCCcceeeecC
Q 005690 166 GLNTGVPWVMCKQ 178 (683)
Q Consensus 166 ~~g~~vp~~~~~~ 178 (683)
+.|+..+.+....
T Consensus 186 ~~G~~giyii~~~ 198 (345)
T PF14307_consen 186 EAGLPGIYIIAVQ 198 (345)
T ss_pred HcCCCceEEEEEe
Confidence 9999877666544
No 59
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=85.50 E-value=1.8 Score=49.52 Aligned_cols=61 Identities=10% Similarity=0.209 Sum_probs=42.9
Q ss_pred cccHH---HHHHHHHHCCCCEEEE-cccCCc-----cCCcCCee--------------eeccchhHHHHHHHHHHcCcEE
Q 005690 13 LQMWP---DLIQKAKDGGLDVIQT-YVFWNG-----HEPTQGNY--------------YFQDRYDLVRFIKLVQQAGLYV 69 (683)
Q Consensus 13 ~~~W~---d~l~k~ka~G~N~V~~-yv~Wn~-----hEp~~G~~--------------dF~G~~dl~~fl~~a~~~GL~V 69 (683)
.+.|. +.|.-+|++|+++|-+ .++-+. |--.+-.| .|....||.++++.|+++||+|
T Consensus 18 ~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~v 97 (479)
T PRK09441 18 GKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKV 97 (479)
T ss_pred ccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEE
Confidence 35676 5566679999999987 455432 33222222 2445679999999999999999
Q ss_pred Eeec
Q 005690 70 HLRI 73 (683)
Q Consensus 70 ilrp 73 (683)
|+-.
T Consensus 98 i~D~ 101 (479)
T PRK09441 98 YADV 101 (479)
T ss_pred EEEE
Confidence 9874
No 60
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.11 E-value=4.1 Score=45.77 Aligned_cols=123 Identities=20% Similarity=0.235 Sum_probs=79.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcc-------------cCCccCCcCCeeee-ccchhHHHHHHHHHHcCcEEEeecCcee
Q 005690 12 WLQMWPDLIQKAKDGGLDVIQTYV-------------FWNGHEPTQGNYYF-QDRYDLVRFIKLVQQAGLYVHLRIGPYV 77 (683)
Q Consensus 12 ~~~~W~d~l~k~ka~G~N~V~~yv-------------~Wn~hEp~~G~~dF-~G~~dl~~fl~~a~~~GL~VilrpGPyi 77 (683)
.+..-.+.|.+++++|+|||-.-| +|..-. ||.+-= .|..=|...|++|++.||.|+.+.=||.
T Consensus 62 ~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~--~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~ 139 (418)
T COG1649 62 QRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL--PGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYR 139 (418)
T ss_pred cHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCc--CcccCCCCCCChHHHHHHHHHhcCCeeeechhhcc
Confidence 456667899999999999997432 354443 443311 2333677779999999999999887776
Q ss_pred ccccCCCC---CCcccccc-CCeE-eecCC-------hhhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccCC
Q 005690 78 CAEWNYGG---FPVWLKYV-PGIE-FRTDN-------GPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFG 143 (683)
Q Consensus 78 ~aEw~~GG---~P~WL~~~-p~~~-~Rt~~-------~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg 143 (683)
.|--..-. -|.|+... |+-. .+... .+...+|+.|+..++-.+.. .+ .|=++|++.=++
T Consensus 140 ~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~-~Y------dvDGIQfDd~fy 210 (418)
T COG1649 140 MAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVR-NY------DVDGIQFDDYFY 210 (418)
T ss_pred cCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHh-CC------CCCceecceeec
Confidence 55322111 37777653 4433 23332 13567888888877665542 33 677889877655
No 61
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=84.92 E-value=6 Score=41.37 Aligned_cols=132 Identities=14% Similarity=0.213 Sum_probs=74.6
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEE-eecCceeccccCCCCCCccccc
Q 005690 14 QMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCAEWNYGGFPVWLKY 92 (683)
Q Consensus 14 ~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~Vi-lrpGPyi~aEw~~GG~P~WL~~ 92 (683)
-.|++.++.++++|+..|+..+. ..|+ .....+|+ ..++.++-++++++||.|. +.++.+ + .+|
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~Gl~i~~~~~~~~----~---~~~----- 80 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVD-ESDE-RLARLDWS-KEERLSLVKAIYETGVRIPSMCLSGH----R---RFP----- 80 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-Cccc-ccccccCC-HHHHHHHHHHHHHcCCCceEEecccc----c---CcC-----
Confidence 58999999999999999999642 2222 01122333 3478999999999999875 332211 0 011
Q ss_pred cCCeEeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccCCCccc-cCCCCcHHHHHHHHHHHhhCCCCc
Q 005690 93 VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEW-DIGAPGKAYAKWAAQMAVGLNTGV 171 (683)
Q Consensus 93 ~p~~~~Rt~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~-~~~~~~~~y~~~l~~~~~~~g~~v 171 (683)
+.+.|+.-+++..+.++++++..+ .+ |.++|-+---..+..... ..-..-.+.++.+.+++.+.|+.+
T Consensus 81 -----~~~~d~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l 149 (284)
T PRK13210 81 -----FGSRDPATRERALEIMKKAIRLAQ--DL----GIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVML 149 (284)
T ss_pred -----CCCCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 223455555666666777777666 33 556665421000000000 000011356677777888888754
No 62
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=84.43 E-value=75 Score=35.57 Aligned_cols=241 Identities=15% Similarity=0.194 Sum_probs=122.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEE-------cccCCccCCcCCeeeeccchh-HHHHHHHHHHcCcEEEeecCceecc-ccC
Q 005690 12 WLQMWPDLIQKAKDGGLDVIQT-------YVFWNGHEPTQGNYYFQDRYD-LVRFIKLVQQAGLYVHLRIGPYVCA-EWN 82 (683)
Q Consensus 12 ~~~~W~d~l~k~ka~G~N~V~~-------yv~Wn~hEp~~G~~dF~G~~d-l~~fl~~a~~~GL~VilrpGPyi~a-Ew~ 82 (683)
.++.|. +.+|++|+..|-. +-.|.-.-..-..-+-.-.+| |.+|.++|+++||++-+ |.-. +|.
T Consensus 82 D~~~Wa---~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~----Y~S~~DW~ 154 (384)
T smart00812 82 DPEEWA---DLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGL----YHSLFDWF 154 (384)
T ss_pred CHHHHH---HHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEE----EcCHHHhC
Confidence 455665 5778899886643 223555433222222111345 56788999999998766 4433 665
Q ss_pred CCCCCccccccCCeEeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccCCCccccCCCCcHHHHHHHHH
Q 005690 83 YGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQ 162 (683)
Q Consensus 83 ~GG~P~WL~~~p~~~~Rt~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~ 162 (683)
. |.|....+.-..+.+.+.|.+.++.|+.+|.+.+. .+ ||-|++- +-..+.. ...--++.|.+
T Consensus 155 ~---p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit--~Y-----gpd~lWf-D~~~~~~------~~~~~~~~l~~ 217 (384)
T smart00812 155 N---PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVT--RY-----KPDLLWF-DGGWEAP------DDYWRSKEFLA 217 (384)
T ss_pred C---CccccccccccccccchhHHHHHHHHHHHHHHHHh--cC-----CCceEEE-eCCCCCc------cchhcHHHHHH
Confidence 4 44432111111234457788888888888888887 32 3444442 2211110 01111344555
Q ss_pred HHhhCCCCc-ceeeecCCCCCCccccCCCCc-cc-cccCCCC-CCCCce-eeeccccccCccCC-CCCCCChHHHHHHHH
Q 005690 163 MAVGLNTGV-PWVMCKQDDAPDPVINTCNGF-YC-EKFVPNQ-NYKPKM-WTEAWTGWFTEFGS-AVPTRPAEDLVFSVA 236 (683)
Q Consensus 163 ~~~~~g~~v-p~~~~~~~~~~~~~~~t~~g~-~~-~~~~~~~-p~~P~~-~~E~~~Gwf~~wG~-~~~~~~~~~~~~~~~ 236 (683)
+++++..+. -.+.++.... .. ....++ .+ +...+.. ...|-- ++=.-.+|+=+-++ .....+++.+...+.
T Consensus 218 ~~~~~qP~~~~vvvn~R~~~-~~--~~~g~~~~~~e~~~p~~~~~~pwE~~~ti~~sWgy~~~~~~~~~ks~~~li~~l~ 294 (384)
T smart00812 218 WLYNLSPVKDTVVVNDRWGG-TG--CKHGGFYTDEERGAPGKLLPHPWETCTTIGKSWGYRRNESDSDYKSPKELIRDLV 294 (384)
T ss_pred HHHHhCCCCceEEEEccccc-cC--CCCCCcccCcccCCCCCCCCCCcccccccCCCCCcCCCCCcccCCCHHHHHHHHh
Confidence 555544332 1133333210 00 000000 11 1111110 011110 00011244433332 223568888999888
Q ss_pred HHHHcCCeeeeeeeeccCCCCCCCCCCCcccccCCCCCcCccCCCCchhHHHHHHHHHHHHhhcCCC
Q 005690 237 RFIQSGGSFINYYMYHGGTNFGRTSGGFVATSYDYDAPIDEYGLLNEPKWGHLRDLHKAIKLCEPAL 303 (683)
Q Consensus 237 ~~l~~g~s~~n~YM~hGGTNfG~~~g~~~~tSYDy~Apl~E~G~~~t~Ky~~lr~l~~~~~~~~~~l 303 (683)
...++|+++ -+ .-+-+.+|.+..+.-..|++++.+++.....+
T Consensus 295 ~~Vsk~Gnl---LL---------------------NVgP~~dG~ip~~~~~~L~~iG~Wl~~ngeaI 337 (384)
T smart00812 295 DIVSKGGNL---LL---------------------NVGPKADGTIPEEEEERLLEIGKWLKVNGEAI 337 (384)
T ss_pred hhcCCCceE---EE---------------------ccCCCCCCCCCHHHHHHHHHHHHHHHhCCcee
Confidence 999999863 22 23456778886667788999999998765543
No 63
>PRK14705 glycogen branching enzyme; Provisional
Probab=84.02 E-value=21 Score=45.61 Aligned_cols=54 Identities=20% Similarity=0.234 Sum_probs=38.3
Q ss_pred HHHHHHHCCCCEEEE-ccc-------CCccCCc--CCeeeeccchhHHHHHHHHHHcCcEEEee
Q 005690 19 LIQKAKDGGLDVIQT-YVF-------WNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLR 72 (683)
Q Consensus 19 ~l~k~ka~G~N~V~~-yv~-------Wn~hEp~--~G~~dF~G~~dl~~fl~~a~~~GL~Vilr 72 (683)
.|.-+|++|+|+|+. .|+ |.+.--. .=.-.|.+..||.+|++.|+++||.|||-
T Consensus 771 lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD 834 (1224)
T PRK14705 771 LVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLD 834 (1224)
T ss_pred HHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 367889999999996 442 5432110 00113455689999999999999999987
No 64
>PRK12313 glycogen branching enzyme; Provisional
Probab=83.64 E-value=2.2 Score=50.69 Aligned_cols=53 Identities=17% Similarity=0.255 Sum_probs=37.6
Q ss_pred HHHHHHCCCCEEEE-ccc-------CCccCCcC--CeeeeccchhHHHHHHHHHHcCcEEEee
Q 005690 20 IQKAKDGGLDVIQT-YVF-------WNGHEPTQ--GNYYFQDRYDLVRFIKLVQQAGLYVHLR 72 (683)
Q Consensus 20 l~k~ka~G~N~V~~-yv~-------Wn~hEp~~--G~~dF~G~~dl~~fl~~a~~~GL~Vilr 72 (683)
|.-+|++|+|+|.. .|+ |.+.-..- =.-.|.+..||.+|++.|+++||.|||-
T Consensus 177 l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD 239 (633)
T PRK12313 177 IPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILD 239 (633)
T ss_pred HHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 58889999999995 443 32211100 0113556689999999999999999987
No 65
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=83.41 E-value=1.1 Score=46.55 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=39.5
Q ss_pred HHHHHHHHHCCCCEEEEcccCCcc----CCcCCee-e----eccchhHHHHHHHHHHcCcEEEeec
Q 005690 17 PDLIQKAKDGGLDVIQTYVFWNGH----EPTQGNY-Y----FQDRYDLVRFIKLVQQAGLYVHLRI 73 (683)
Q Consensus 17 ~d~l~k~ka~G~N~V~~yv~Wn~h----Ep~~G~~-d----F~G~~dl~~fl~~a~~~GL~Vilrp 73 (683)
.+.|.-+|++|+|+|..-=++... --.+-.| + |....||.++++.|+++||+|||-.
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 456888999999999975333322 1122122 1 3345799999999999999999874
No 66
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=82.63 E-value=3.8 Score=44.55 Aligned_cols=110 Identities=15% Similarity=0.242 Sum_probs=69.6
Q ss_pred cccHHHHHHHHHHCCCCEEEE-------cccCCccCCcCCeeeec-c-chhHHHHHHHHHHcCcEEEeecCceeccccCC
Q 005690 13 LQMWPDLIQKAKDGGLDVIQT-------YVFWNGHEPTQGNYYFQ-D-RYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNY 83 (683)
Q Consensus 13 ~~~W~d~l~k~ka~G~N~V~~-------yv~Wn~hEp~~G~~dF~-G-~~dl~~fl~~a~~~GL~VilrpGPyi~aEw~~ 83 (683)
++.-++.|+.+|+.|+|+|-+ .|.+....|..-+..-. . ..|+.++++.++++|+|+|.|.=-+--..- .
T Consensus 12 ~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~l-a 90 (316)
T PF13200_consen 12 PERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFKDPVL-A 90 (316)
T ss_pred HHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEecChHH-h
Confidence 466788999999999999874 35565555544333222 1 369999999999999999999632220000 0
Q ss_pred CCCCccccccC-CeEeecCC-----hhhHHHHHHHHHHHHHHHhhc
Q 005690 84 GGFPVWLKYVP-GIEFRTDN-----GPFKAAMHKFTEKIVSMMKAE 123 (683)
Q Consensus 84 GG~P~WL~~~p-~~~~Rt~~-----~~y~~~~~~~~~~l~~~l~~~ 123 (683)
.--|.|-.+.. +-..|..+ .+|.+++.+|.-.|++.+++.
T Consensus 91 ~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~ 136 (316)
T PF13200_consen 91 EAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKL 136 (316)
T ss_pred hhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHc
Confidence 01344543211 11111111 257899999999999999854
No 67
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=80.36 E-value=3.1 Score=48.53 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=39.4
Q ss_pred HHHHHHHHCCCCEEEE-ccc-------CCccCCcCC--eeeeccchhHHHHHHHHHHcCcEEEeec
Q 005690 18 DLIQKAKDGGLDVIQT-YVF-------WNGHEPTQG--NYYFQDRYDLVRFIKLVQQAGLYVHLRI 73 (683)
Q Consensus 18 d~l~k~ka~G~N~V~~-yv~-------Wn~hEp~~G--~~dF~G~~dl~~fl~~a~~~GL~Vilrp 73 (683)
++|.-+|++|+|+|.. .|+ |.+.-...- .-.|.+..+|.+|++.|+++||.|||-.
T Consensus 115 ~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 115 EKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred HhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4578889999999986 342 433211100 1134566899999999999999999873
No 68
>PLN02960 alpha-amylase
Probab=80.04 E-value=4.2 Score=49.62 Aligned_cols=71 Identities=18% Similarity=0.109 Sum_probs=46.4
Q ss_pred ceecccCCCCc------ccHHHHHHHHHHCCCCEEEE-ccc-------CCccCCcC--CeeeeccchhHHHHHHHHHHcC
Q 005690 3 SFYFSFFFIWL------QMWPDLIQKAKDGGLDVIQT-YVF-------WNGHEPTQ--GNYYFQDRYDLVRFIKLVQQAG 66 (683)
Q Consensus 3 e~~~~~~r~~~------~~W~d~l~k~ka~G~N~V~~-yv~-------Wn~hEp~~--G~~dF~G~~dl~~fl~~a~~~G 66 (683)
|+|...+.... +.=+++|.-+|++|+|+|+. .|+ |.+.-... =.-.|....+|.+|++.|+++|
T Consensus 400 ElHvg~~~~e~~~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~G 479 (897)
T PLN02960 400 ECHVGISGSEPKISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLG 479 (897)
T ss_pred EEecccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCC
Confidence 66765554321 11235688999999999996 453 44321110 0112445679999999999999
Q ss_pred cEEEeec
Q 005690 67 LYVHLRI 73 (683)
Q Consensus 67 L~Vilrp 73 (683)
|.|||-.
T Consensus 480 I~VILDv 486 (897)
T PLN02960 480 LLVFLDI 486 (897)
T ss_pred CEEEEEe
Confidence 9999874
No 69
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=79.78 E-value=2.7 Score=49.52 Aligned_cols=68 Identities=22% Similarity=0.344 Sum_probs=49.3
Q ss_pred ceecccCCC-----CcccHHHHHHHHHHCCCCEEEE-ccc-------CCccCCcCCee----eeccchhHHHHHHHHHHc
Q 005690 3 SFYFSFFFI-----WLQMWPDLIQKAKDGGLDVIQT-YVF-------WNGHEPTQGNY----YFQDRYDLVRFIKLVQQA 65 (683)
Q Consensus 3 e~~~~~~r~-----~~~~W~d~l~k~ka~G~N~V~~-yv~-------Wn~hEp~~G~~----dF~G~~dl~~fl~~a~~~ 65 (683)
|+|.--|+. ..+.=.+.|.-+|+||+++|+. .|. |.+--- |-| .|..-.||.+||+.|+++
T Consensus 149 ElHvGs~~~~~~~~~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~--g~yAp~sryGtPedfk~fVD~aH~~ 226 (628)
T COG0296 149 ELHVGSFTPDRFLGYFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGT--GYYAPTSRYGTPEDFKALVDAAHQA 226 (628)
T ss_pred EEEeeeccCCCCcCHHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcc--eeccccccCCCHHHHHHHHHHHHHc
Confidence 677777765 4566677888899999999996 332 654321 111 233446999999999999
Q ss_pred CcEEEee
Q 005690 66 GLYVHLR 72 (683)
Q Consensus 66 GL~Vilr 72 (683)
||-|||-
T Consensus 227 GIgViLD 233 (628)
T COG0296 227 GIGVILD 233 (628)
T ss_pred CCEEEEE
Confidence 9999987
No 70
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=79.69 E-value=6.2 Score=45.30 Aligned_cols=61 Identities=18% Similarity=0.359 Sum_probs=38.9
Q ss_pred CcccHHHHHHHHH-HCCCCEEEEc-cc---CCcc-C-CcCC--eeeeccchhHHHHHHHHHHcCcEEEeecCc
Q 005690 12 WLQMWPDLIQKAK-DGGLDVIQTY-VF---WNGH-E-PTQG--NYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 75 (683)
Q Consensus 12 ~~~~W~d~l~k~k-a~G~N~V~~y-v~---Wn~h-E-p~~G--~~dF~G~~dl~~fl~~a~~~GL~VilrpGP 75 (683)
-++.|+..|+.++ +.||..|++- +| .... + ...| .|||+ .||.+++...++||.-++..|-
T Consensus 37 l~~~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~---~lD~i~D~l~~~g~~P~vel~f 106 (486)
T PF01229_consen 37 LRADWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFT---YLDQILDFLLENGLKPFVELGF 106 (486)
T ss_dssp GBHHHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--H---HHHHHHHHHHHCT-EEEEEE-S
T ss_pred hhHHHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCChH---HHHHHHHHHHHcCCEEEEEEEe
Confidence 4678999999997 5799999863 22 1111 1 1223 39999 9999999999999998776653
No 71
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=79.13 E-value=16 Score=38.25 Aligned_cols=54 Identities=9% Similarity=0.152 Sum_probs=39.1
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHc-CcEEEe
Q 005690 14 QMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQA-GLYVHL 71 (683)
Q Consensus 14 ~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~-GL~Vil 71 (683)
.-|++.|+.+|++|++.|+.-+........+ .....+++++.++++++ ++.+.+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~i~~ 64 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSR----PLKKERAEKFKAIAEEGPSICLSV 64 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCC----CCCHHHHHHHHHHHHHcCCCcEEE
Confidence 6799999999999999999876432111111 11346899999999999 666554
No 72
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=77.98 E-value=39 Score=34.78 Aligned_cols=44 Identities=16% Similarity=0.187 Sum_probs=36.3
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEEe
Q 005690 14 QMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 71 (683)
Q Consensus 14 ~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~Vil 71 (683)
.-+++.+++++++|++.|+...++ ..++..+.++++++||.|..
T Consensus 14 ~~l~e~~~~~~e~G~~~vEl~~~~--------------~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 14 LPFLERFAAAAQAGFTGVEYLFPY--------------DWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEecCCc--------------cCCHHHHHHHHHHcCCeEEE
Confidence 468999999999999999985432 13688899999999999863
No 73
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=77.76 E-value=12 Score=39.12 Aligned_cols=126 Identities=16% Similarity=0.246 Sum_probs=73.5
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEE-eecCceeccccCCCCCCccccc
Q 005690 14 QMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCAEWNYGGFPVWLKY 92 (683)
Q Consensus 14 ~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~Vi-lrpGPyi~aEw~~GG~P~WL~~ 92 (683)
.-|.+.++.++++|+..|+..+. ..++ ....++++ ..+++++.++++++||.|. +.++.. ..++
T Consensus 21 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~gl~i~~~~~~~~-------~~~~----- 85 (283)
T PRK13209 21 ECWLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWS-REQRLALVNALVETGFRVNSMCLSAH-------RRFP----- 85 (283)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-cccc-chhccCCC-HHHHHHHHHHHHHcCCceeEEecccc-------cccC-----
Confidence 46999999999999999998532 1111 01112333 2468899999999999875 332211 0011
Q ss_pred cCCeEeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccCCCccccCCCC-------cHHHHHHHHHHHh
Q 005690 93 VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAP-------GKAYAKWAAQMAV 165 (683)
Q Consensus 93 ~p~~~~Rt~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~-------~~~y~~~l~~~~~ 165 (683)
+-+.++.-+++....+++.++..+ .+ |.++|-+. |... .++.. -.+.++.|.+.++
T Consensus 86 -----~~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~i~~~-----~~~~-~~~~~~~~~~~~~~~~l~~l~~~A~ 148 (283)
T PRK13209 86 -----LGSEDDAVRAQALEIMRKAIQLAQ--DL----GIRVIQLA-----GYDV-YYEQANNETRRRFIDGLKESVELAS 148 (283)
T ss_pred -----CCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEC-----Cccc-cccccHHHHHHHHHHHHHHHHHHHH
Confidence 112345556666677777777777 33 66777653 1100 00110 1345667777777
Q ss_pred hCCCCc
Q 005690 166 GLNTGV 171 (683)
Q Consensus 166 ~~g~~v 171 (683)
+.|+.+
T Consensus 149 ~~GV~i 154 (283)
T PRK13209 149 RASVTL 154 (283)
T ss_pred HhCCEE
Confidence 777654
No 74
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=77.31 E-value=3.7 Score=47.89 Aligned_cols=58 Identities=14% Similarity=0.198 Sum_probs=40.5
Q ss_pred HHHHHHHHHHCCCCEEEE-cccCCc---cCCcCCee-----eeccchhHHHHHHHHHHcCcEEEeec
Q 005690 16 WPDLIQKAKDGGLDVIQT-YVFWNG---HEPTQGNY-----YFQDRYDLVRFIKLVQQAGLYVHLRI 73 (683)
Q Consensus 16 W~d~l~k~ka~G~N~V~~-yv~Wn~---hEp~~G~~-----dF~G~~dl~~fl~~a~~~GL~Vilrp 73 (683)
+.++|.-+|++|+|+|-+ .++-+- |--.+..| .|....||.+|++.|+++||+|||-.
T Consensus 29 i~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 29 IIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred HHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 567788999999999986 344321 11111111 14456799999999999999999873
No 75
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=76.90 E-value=41 Score=37.61 Aligned_cols=90 Identities=12% Similarity=0.143 Sum_probs=52.8
Q ss_pred cccHHHHHHHHHHCCCCEEEEc----ccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEE-eecCceeccccCCCCCC
Q 005690 13 LQMWPDLIQKAKDGGLDVIQTY----VFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCAEWNYGGFP 87 (683)
Q Consensus 13 ~~~W~d~l~k~ka~G~N~V~~y----v~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~Vi-lrpGPyi~aEw~~GG~P 87 (683)
+....+++++++++|+..|+.. ++|..-..+. ..++.++-++++++||.|. +-++-+....+..|+
T Consensus 31 ~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~-------~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~g~-- 101 (382)
T TIGR02631 31 ALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQER-------DQIVRRFKKALDETGLKVPMVTTNLFSHPVFKDGG-- 101 (382)
T ss_pred CcCHHHHHHHHHHhCCCEEEecccccCCCCCChhHH-------HHHHHHHHHHHHHhCCeEEEeeccccCCccccCCC--
Confidence 4567799999999999999964 2222111100 2357899999999999975 333211111122222
Q ss_pred ccccccCCeEeecCChhhHHHHHHHHHHHHHHHh
Q 005690 88 VWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMK 121 (683)
Q Consensus 88 ~WL~~~p~~~~Rt~~~~y~~~~~~~~~~l~~~l~ 121 (683)
+-+.|+..+++.-+.+++.++.-+
T Consensus 102 ----------las~d~~vR~~ai~~~kraId~A~ 125 (382)
T TIGR02631 102 ----------FTSNDRSVRRYALRKVLRNMDLGA 125 (382)
T ss_pred ----------CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 223456665555555566666655
No 76
>PRK10785 maltodextrin glucosidase; Provisional
Probab=75.87 E-value=5.5 Score=47.05 Aligned_cols=57 Identities=19% Similarity=0.227 Sum_probs=40.8
Q ss_pred HHHHHHHHHCCCCEEEE-cccCC--ccCCcCCee-----eeccchhHHHHHHHHHHcCcEEEeec
Q 005690 17 PDLIQKAKDGGLDVIQT-YVFWN--GHEPTQGNY-----YFQDRYDLVRFIKLVQQAGLYVHLRI 73 (683)
Q Consensus 17 ~d~l~k~ka~G~N~V~~-yv~Wn--~hEp~~G~~-----dF~G~~dl~~fl~~a~~~GL~Vilrp 73 (683)
.+.|.-+|++|+|+|-. .||=+ .|--....| .|.+..||.+|++.|+++||+|||-.
T Consensus 182 ~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 46678889999999996 56532 122112212 24556899999999999999999863
No 77
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=75.76 E-value=3.5 Score=40.43 Aligned_cols=125 Identities=14% Similarity=0.106 Sum_probs=71.7
Q ss_pred HHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEEeecCceeccccCCCCCCccccccCCeEee
Q 005690 20 IQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFR 99 (683)
Q Consensus 20 l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~WL~~~p~~~~R 99 (683)
|+.++++|+..|+............ ..+++++.++++++||.++.--.+.. + ..+ ....+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~~~---~---~~~-------~~~~~ 60 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPPTN---F---WSP-------DEENG 60 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEEES---S---SCT-------GTTST
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEecccc---c---ccc-------ccccc
Confidence 6789999999999876543332222 34799999999999999653221110 1 000 00123
Q ss_pred cCChhhHHHHHHHHHHHHHHHhhcccccccCCceEecccc--ccCCCcccc-CCCCcHHHHHHHHHHHhhCCCCc
Q 005690 100 TDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIE--NEFGPVEWD-IGAPGKAYAKWAAQMAVGLNTGV 171 (683)
Q Consensus 100 t~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiE--NEyg~~~~~-~~~~~~~y~~~l~~~~~~~g~~v 171 (683)
+.++. ++.....+.+.++..+ .+ |...|.+..= +........ .-+.-.+.++.|.+.+++.|+.+
T Consensus 61 ~~~~~-r~~~~~~~~~~i~~a~--~l----g~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i 128 (213)
T PF01261_consen 61 SANDE-REEALEYLKKAIDLAK--RL----GAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRI 128 (213)
T ss_dssp TSSSH-HHHHHHHHHHHHHHHH--HH----TBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEE
T ss_pred Ccchh-hHHHHHHHHHHHHHHH--Hh----CCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceE
Confidence 34444 7777778888888877 33 5677777733 111111000 00012346666677777777653
No 78
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=74.85 E-value=36 Score=35.44 Aligned_cols=130 Identities=12% Similarity=0.066 Sum_probs=69.6
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEEeecCceeccccCCCCCCcccccc
Q 005690 14 QMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYV 93 (683)
Q Consensus 14 ~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~WL~~~ 93 (683)
..+++.|+.++++|++.|+...-. .|+-.+ +++ ..+++++-++++++||.|.. .+|. .+++|..+.
T Consensus 13 ~~l~~~l~~~~~~G~~~vEl~~~~-~~~~~~---~~~-~~~~~~l~~~~~~~gl~v~s-~~~~------~~~~~~~~~-- 78 (275)
T PRK09856 13 LPIEHAFRDASELGYDGIEIWGGR-PHAFAP---DLK-AGGIKQIKALAQTYQMPIIG-YTPE------TNGYPYNMM-- 78 (275)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCC-cccccc---ccC-chHHHHHHHHHHHcCCeEEE-ecCc------ccCcCcccc--
Confidence 459999999999999999983211 011011 121 24788899999999999853 2221 123433321
Q ss_pred CCeEeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccCCCccccCC---CCcHHHHHHHHHHHhhCCCC
Q 005690 94 PGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIG---APGKAYAKWAAQMAVGLNTG 170 (683)
Q Consensus 94 p~~~~Rt~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~---~~~~~y~~~l~~~~~~~g~~ 170 (683)
..++.-+++..+.+++.++.-+ .+ |.+.|.+-.-.. +.... .. ..-.+.++.|.+.+.+.|+.
T Consensus 79 ------~~~~~~r~~~~~~~~~~i~~a~--~l----Ga~~i~~~~~~~-~~~~~-~~~~~~~~~~~l~~l~~~a~~~gv~ 144 (275)
T PRK09856 79 ------LGDEHMRRESLDMIKLAMDMAK--EM----NAGYTLISAAHA-GYLTP-PNVIWGRLAENLSELCEYAENIGMD 144 (275)
T ss_pred ------CCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEEcCCCC-CCCCC-HHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 1233344444555555555555 32 555655521111 10000 00 01234667777778887765
Q ss_pred c
Q 005690 171 V 171 (683)
Q Consensus 171 v 171 (683)
+
T Consensus 145 l 145 (275)
T PRK09856 145 L 145 (275)
T ss_pred E
Confidence 4
No 79
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=74.74 E-value=5.3 Score=47.23 Aligned_cols=55 Identities=24% Similarity=0.420 Sum_probs=38.0
Q ss_pred HHHHHHHHCCCCEEEE-ccc---------------CCccC-----CcCCeee----ec--cchhHHHHHHHHHHcCcEEE
Q 005690 18 DLIQKAKDGGLDVIQT-YVF---------------WNGHE-----PTQGNYY----FQ--DRYDLVRFIKLVQQAGLYVH 70 (683)
Q Consensus 18 d~l~k~ka~G~N~V~~-yv~---------------Wn~hE-----p~~G~~d----F~--G~~dl~~fl~~a~~~GL~Vi 70 (683)
+.|.-+|++|+|+|.. .|+ |.+.- |+ +.|- |- ...+|.+|++.|+++||.||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~-~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPE-GSYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcC-hhhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 4589999999999996 343 33331 11 1111 11 13689999999999999999
Q ss_pred eec
Q 005690 71 LRI 73 (683)
Q Consensus 71 lrp 73 (683)
|-.
T Consensus 247 lDv 249 (605)
T TIGR02104 247 MDV 249 (605)
T ss_pred EEE
Confidence 874
No 80
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=73.81 E-value=6.6 Score=45.92 Aligned_cols=55 Identities=15% Similarity=0.262 Sum_probs=40.4
Q ss_pred HHHHHHHHHHCCCCEEEE-cccCCccCCcC-Cee----------eeccchhHHHHHHHHHHcCcEEEeec
Q 005690 16 WPDLIQKAKDGGLDVIQT-YVFWNGHEPTQ-GNY----------YFQDRYDLVRFIKLVQQAGLYVHLRI 73 (683)
Q Consensus 16 W~d~l~k~ka~G~N~V~~-yv~Wn~hEp~~-G~~----------dF~G~~dl~~fl~~a~~~GL~Vilrp 73 (683)
+.++|.-+|++|+++|-+ .++-. |.. ..| +|....||.++++.|+++||+|||-.
T Consensus 35 i~~~ldyl~~lGv~~i~l~P~~~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 35 VTQRLDYLQKLGVDAIWLTPFYVS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHhhHHHHhCCCCEEEECCCCCC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 557888999999999987 45421 111 122 24456799999999999999999763
No 81
>PRK09505 malS alpha-amylase; Reviewed
Probab=72.20 E-value=7.2 Score=46.78 Aligned_cols=58 Identities=10% Similarity=0.107 Sum_probs=42.0
Q ss_pred HHHHHHHHHHCCCCEEEE-cccCCccC-----------------CcCCe-----eeeccchhHHHHHHHHHHcCcEEEee
Q 005690 16 WPDLIQKAKDGGLDVIQT-YVFWNGHE-----------------PTQGN-----YYFQDRYDLVRFIKLVQQAGLYVHLR 72 (683)
Q Consensus 16 W~d~l~k~ka~G~N~V~~-yv~Wn~hE-----------------p~~G~-----~dF~G~~dl~~fl~~a~~~GL~Vilr 72 (683)
+.+.|.-+|++|+|+|-+ .++=+.|. --+-. -.|....||+++++.|+++||+|||-
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 567788899999999985 45443332 11111 12455679999999999999999987
Q ss_pred c
Q 005690 73 I 73 (683)
Q Consensus 73 p 73 (683)
.
T Consensus 312 ~ 312 (683)
T PRK09505 312 V 312 (683)
T ss_pred E
Confidence 4
No 82
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=71.43 E-value=60 Score=33.64 Aligned_cols=43 Identities=21% Similarity=0.355 Sum_probs=35.2
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEEe
Q 005690 15 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 71 (683)
Q Consensus 15 ~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~Vil 71 (683)
-++++|++++++|++.|+... + + ..+++++.++++++||.+..
T Consensus 16 ~l~~~l~~~a~~Gf~~VEl~~------~----~----~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 16 DFLARFEKAAQCGFRGVEFMF------P----Y----DYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred CHHHHHHHHHHhCCCEEEEcC------C----C----CCCHHHHHHHHHHcCCcEEE
Confidence 388999999999999999832 1 1 13799999999999999854
No 83
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=70.91 E-value=11 Score=48.13 Aligned_cols=91 Identities=15% Similarity=0.260 Sum_probs=58.2
Q ss_pred ccHHHHHHHHHHCCCCEEEE-ccc-CCc---cCCcCCeee----e----ccchhHHHHHHHHHHc-CcEEEeecCceecc
Q 005690 14 QMWPDLIQKAKDGGLDVIQT-YVF-WNG---HEPTQGNYY----F----QDRYDLVRFIKLVQQA-GLYVHLRIGPYVCA 79 (683)
Q Consensus 14 ~~W~d~l~k~ka~G~N~V~~-yv~-Wn~---hEp~~G~~d----F----~G~~dl~~fl~~a~~~-GL~VilrpGPyi~a 79 (683)
+.|++.|+.+|++|.|+|.. .++ =.. .=...+.+. | .+..|+.++++.|++. ||.||+-.
T Consensus 132 ~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDv------ 205 (1464)
T TIGR01531 132 SEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDI------ 205 (1464)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEe------
Confidence 56999999999999999985 454 111 111112222 3 2567999999999996 99999873
Q ss_pred ccCCCCC-CccccccCCeEeecCChhhHHHHH
Q 005690 80 EWNYGGF-PVWLKYVPGIEFRTDNGPFKAAMH 110 (683)
Q Consensus 80 Ew~~GG~-P~WL~~~p~~~~Rt~~~~y~~~~~ 110 (683)
=|+.-+- =.||...|+.-....+.+||++.-
T Consensus 206 V~NHTa~ds~Wl~eHPEa~Yn~~~sP~L~~A~ 237 (1464)
T TIGR01531 206 VFNHTANNSPWLLEHPEAAYNCITSPHLRPAI 237 (1464)
T ss_pred eecccccCCHHHHhChHhhcCCCCCchhhhHH
Confidence 1222222 358887777544444555654433
No 84
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=70.65 E-value=8.8 Score=44.89 Aligned_cols=80 Identities=18% Similarity=0.253 Sum_probs=50.2
Q ss_pred cccHHHHHHHHHHCCCCEEEEc-ccCCccCCcCCee--------eeccc----hhHHHHHHHHHHcCcEEEeecCceecc
Q 005690 13 LQMWPDLIQKAKDGGLDVIQTY-VFWNGHEPTQGNY--------YFQDR----YDLVRFIKLVQQAGLYVHLRIGPYVCA 79 (683)
Q Consensus 13 ~~~W~d~l~k~ka~G~N~V~~y-v~Wn~hEp~~G~~--------dF~G~----~dl~~fl~~a~~~GL~VilrpGPyi~a 79 (683)
++.=++.|..|+...||.|+.| ..|-+|.|-|+.= |+.++ .-+...|+.|++.|+.++.=--=|.+-
T Consensus 117 ~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~ 196 (559)
T PF13199_consen 117 AEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAAN 196 (559)
T ss_dssp HHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEE
T ss_pred chhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhccc
Confidence 4566789999999999999999 8999999987643 22332 367899999999999998543333333
Q ss_pred cc--CCCCCCccccc
Q 005690 80 EW--NYGGFPVWLKY 92 (683)
Q Consensus 80 Ew--~~GG~P~WL~~ 92 (683)
+. ..|=.|.|-+-
T Consensus 197 ~~~~~~gv~~eW~ly 211 (559)
T PF13199_consen 197 NNYEEDGVSPEWGLY 211 (559)
T ss_dssp TT--S--SS-GGBEE
T ss_pred cCcccccCCchhhhh
Confidence 33 35667889763
No 85
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=70.18 E-value=4.3 Score=40.03 Aligned_cols=63 Identities=24% Similarity=0.200 Sum_probs=29.1
Q ss_pred CCceEEEEEcCccccccccCCCCCCCCCCCCCCCcccccccccCCCCCeeeEeecCcccccCCCcEEEEEEecC
Q 005690 597 AMGKGMVWINGQSIGRHWPGYIGNGNCGGCNYAGTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWG 670 (683)
Q Consensus 597 g~gKG~vwVNG~nlGRYW~~~~~~G~~~~~~~~g~~~~~~~~~~~g~PqqtlYhVP~~~Lk~g~N~IvvfEe~g 670 (683)
.-++=.|.||| ..+..+... .| -..|.+|++- -+|+.+.--+.||+..|++|.|+|.|--..|
T Consensus 91 ~~~~~~V~vNg-~~~~~~~~~--~~-~d~~~~r~g~-------~~G~~~~~~~~ipa~~L~~G~Nti~lt~~~g 153 (167)
T PF14683_consen 91 AGGRLQVSVNG-WSGPFPSAP--FG-NDNAIYRSGI-------HRGNYRLYEFDIPASLLKAGENTITLTVPSG 153 (167)
T ss_dssp TT-EEEEEETT-EE--------------S--GGGT----------S---EEEEEE-TTSS-SEEEEEEEEEE-S
T ss_pred CCCCEEEEEcC-ccCCccccc--cC-CCCceeeCce-------ecccEEEEEEEEcHHHEEeccEEEEEEEccC
Confidence 34677899999 777766311 22 1233333322 2233555567899999999999997754444
No 86
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=68.88 E-value=7.2 Score=45.41 Aligned_cols=58 Identities=17% Similarity=0.177 Sum_probs=40.3
Q ss_pred cHHHHHHHHHHCCCCEEEE-cccCC---ccCCcCCee-----eeccchhHHHHHHHHHHcCcEEEee
Q 005690 15 MWPDLIQKAKDGGLDVIQT-YVFWN---GHEPTQGNY-----YFQDRYDLVRFIKLVQQAGLYVHLR 72 (683)
Q Consensus 15 ~W~d~l~k~ka~G~N~V~~-yv~Wn---~hEp~~G~~-----dF~G~~dl~~fl~~a~~~GL~Vilr 72 (683)
-+.+.|.-+|++|+|+|-. .|+=+ -|--.+-.| .|.+..|+.++++.|+++||.|||-
T Consensus 29 gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD 95 (539)
T TIGR02456 29 GLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIID 95 (539)
T ss_pred HHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEE
Confidence 3667889999999999986 34411 111011111 2455679999999999999999985
No 87
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=68.62 E-value=6 Score=44.89 Aligned_cols=133 Identities=17% Similarity=0.191 Sum_probs=85.0
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCcc-CC---cCCeeee-ccchhHHHHHHHHHHcCcEEEeecCceeccccCCCCCC--
Q 005690 15 MWPDLIQKAKDGGLDVIQTYVFWNGH-EP---TQGNYYF-QDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFP-- 87 (683)
Q Consensus 15 ~W~d~l~k~ka~G~N~V~~yv~Wn~h-Ep---~~G~~dF-~G~~dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P-- 87 (683)
.-+++|+.|+.+|+++++.. -+- |+ ++|.-.- ++..-++.|++.|.+++|+|+++ .|.+==.+||.=
T Consensus 27 ei~~dle~a~~vg~k~lR~f---iLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l~lkvlit---livg~~hmgg~Nw~ 100 (587)
T COG3934 27 EIKADLEPAGFVGVKDLRLF---ILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYLDLKVLIT---LIVGLKHMGGTNWR 100 (587)
T ss_pred hhhcccccccCccceeEEEE---EecCcchhhhhceecccccHHHHHHHhhhcccCcceEEEE---EeecccccCcceeE
Confidence 34567778888999999986 344 55 2333221 23457999999999999999877 344333455542
Q ss_pred -cccc-ccCCeEeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccCCCccccCCCCcHHHHHHHHHHHh
Q 005690 88 -VWLK-YVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAV 165 (683)
Q Consensus 88 -~WL~-~~p~~~~Rt~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~ 165 (683)
.|-- +.|+-.+ -|+.++..-++|...+++-.+. ...|.++-+-|| .... -...+..+++|++.|+.
T Consensus 101 Ipwag~~~pdn~i--yD~k~~~~~kkyvedlVk~yk~-------~ptI~gw~l~Ne--~lv~-~p~s~N~f~~w~~emy~ 168 (587)
T COG3934 101 IPWAGEQSPDNVI--YDPKFRGPGKKYVEDLVKPYKL-------DPTIAGWALRNE--PLVE-APISVNNFWDWSGEMYA 168 (587)
T ss_pred eecCCCCCccccc--cchhhcccHHHHHHHHhhhhcc-------ChHHHHHHhcCC--cccc-ccCChhHHHHHHHHHHH
Confidence 2321 1232111 2566667778888888775553 347888999999 3221 12347899999999863
No 88
>PLN02361 alpha-amylase
Probab=68.24 E-value=14 Score=41.55 Aligned_cols=56 Identities=11% Similarity=0.037 Sum_probs=38.3
Q ss_pred HHHHHHHHCCCCEEEEcccCC---ccCCcCCe-ee----eccchhHHHHHHHHHHcCcEEEeec
Q 005690 18 DLIQKAKDGGLDVIQTYVFWN---GHEPTQGN-YY----FQDRYDLVRFIKLVQQAGLYVHLRI 73 (683)
Q Consensus 18 d~l~k~ka~G~N~V~~yv~Wn---~hEp~~G~-~d----F~G~~dl~~fl~~a~~~GL~Vilrp 73 (683)
+.|.-++++|+++|-+.=+.. .|--.+.. |+ |....+|.++++.|+++||.||+-.
T Consensus 33 ~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 33 GKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 445567999999998753322 22222222 22 4456799999999999999999864
No 89
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=64.57 E-value=25 Score=28.49 Aligned_cols=55 Identities=13% Similarity=0.096 Sum_probs=43.2
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEEe
Q 005690 13 LQMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 71 (683)
Q Consensus 13 ~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~Vil 71 (683)
|..-.+.++-+.+.|+|..++|++= ++. ++.+.+.. .|.++..+..+++|..|.|
T Consensus 12 pG~La~v~~~l~~~~inI~~i~~~~--~~~-~~~~rl~~-~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 12 PGRLAAVTEILSEAGINIRALSIAD--TSE-FGILRLIV-SDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred CChHHHHHHHHHHCCCCEEEEEEEe--cCC-CCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence 4567788999999999999999732 333 58877765 5778999999999988754
No 90
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=64.29 E-value=4 Score=47.80 Aligned_cols=35 Identities=31% Similarity=0.430 Sum_probs=28.8
Q ss_pred CcccccCCCCCcCccCCCCchhHHHHHHHH-HHHHh
Q 005690 264 FVATSYDYDAPIDEYGLLNEPKWGHLRDLH-KAIKL 298 (683)
Q Consensus 264 ~~~tSYDy~Apl~E~G~~~t~Ky~~lr~l~-~~~~~ 298 (683)
...|||||+||+.|+|+++++||.++|... +|+..
T Consensus 324 ~~hts~d~~ep~lv~gd~~~~kyg~~~~~C~~Fl~n 359 (649)
T KOG0496|consen 324 PLHTSYDYCEPALVAGDITTAKYGNLREACAAFLSN 359 (649)
T ss_pred cchhhhhhcCccccccCcccccccchhhHHHHHHhc
Confidence 478999999999999998899999999533 34443
No 91
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=63.70 E-value=22 Score=29.48 Aligned_cols=31 Identities=16% Similarity=0.422 Sum_probs=23.6
Q ss_pred CcceEEEEEECCEEEEEEEcccCC--CeeEEee
Q 005690 454 SAGHALQVFINGQLSGTVYGSLEN--PKLTFSK 484 (683)
Q Consensus 454 ~~~d~a~vfvng~~~G~~~~~~~~--~~~~~~~ 484 (683)
...|.|-||++++|+|++++.... .++.|++
T Consensus 25 k~~dsaEV~~g~EfiGvi~~DedeGe~Sy~f~M 57 (63)
T PF11324_consen 25 KKDDSAEVYIGDEFIGVIYRDEDEGEVSYNFQM 57 (63)
T ss_pred CCCCceEEEeCCEEEEEEEeecCCCcEEEEEEE
Confidence 457999999999999999986443 3455543
No 92
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=62.87 E-value=88 Score=35.19 Aligned_cols=88 Identities=19% Similarity=0.309 Sum_probs=56.2
Q ss_pred cCCCCcccHHHHHHHHHHCCCCEEEEcccCCccCCcC----Ceeeeccc---hhHHHHHHHHHHcCcEEEeecCceeccc
Q 005690 8 FFFIWLQMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQ----GNYYFQDR---YDLVRFIKLVQQAGLYVHLRIGPYVCAE 80 (683)
Q Consensus 8 ~~r~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~----G~~dF~G~---~dl~~fl~~a~~~GL~VilrpGPyi~aE 80 (683)
||.+..+.-.+.+++++++|++.+.+=--|....... |.+.-+-. .-|..+.+.+++.||..=|+..|..+++
T Consensus 52 ~~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~ 131 (394)
T PF02065_consen 52 YFDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMVSP 131 (394)
T ss_dssp TTG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEEES
T ss_pred CcCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccccc
Confidence 5566777788899999999999877755676542221 33322111 2499999999999999988887765432
Q ss_pred cC--CCCCCccccccCC
Q 005690 81 WN--YGGFPVWLKYVPG 95 (683)
Q Consensus 81 w~--~GG~P~WL~~~p~ 95 (683)
=. +-..|.|+...++
T Consensus 132 ~S~l~~~hPdw~l~~~~ 148 (394)
T PF02065_consen 132 DSDLYREHPDWVLRDPG 148 (394)
T ss_dssp SSCHCCSSBGGBTCCTT
T ss_pred hhHHHHhCccceeecCC
Confidence 11 2247999987654
No 93
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=62.86 E-value=15 Score=44.79 Aligned_cols=60 Identities=17% Similarity=0.102 Sum_probs=43.3
Q ss_pred ccHHHHHHHHHHCCCCEEEE-cccCC----ccCCcC---C--eeeeccchhHHHHHHHHHHcCcEEEeec
Q 005690 14 QMWPDLIQKAKDGGLDVIQT-YVFWN----GHEPTQ---G--NYYFQDRYDLVRFIKLVQQAGLYVHLRI 73 (683)
Q Consensus 14 ~~W~d~l~k~ka~G~N~V~~-yv~Wn----~hEp~~---G--~~dF~G~~dl~~fl~~a~~~GL~Vilrp 73 (683)
+.|.+.|.-++++|+++|-+ .++=+ .|--.. . .-.|.+..+|.+|++.|+++||.||+-.
T Consensus 16 ~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDi 85 (825)
T TIGR02401 16 DDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDI 85 (825)
T ss_pred HHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 56889999999999999976 34311 111111 1 1135577899999999999999999874
No 94
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=61.91 E-value=4.1 Score=41.98 Aligned_cols=53 Identities=13% Similarity=0.201 Sum_probs=43.2
Q ss_pred HHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEEee
Q 005690 17 PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 72 (683)
Q Consensus 17 ~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~Vilr 72 (683)
-...+++.++|.+.|.+.++|....+..-.+... ++.++.+.|++.||.||+-
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~---~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIE---EIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHH---HHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHH---HHHHHHHHHhcCCcEEEEE
Confidence 4457889999999999999997766655444444 9999999999999999998
No 95
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=61.76 E-value=14 Score=32.09 Aligned_cols=49 Identities=20% Similarity=0.362 Sum_probs=33.5
Q ss_pred ceEecCcceEEEEEECCEEEEEEEcccCCCeeEEeeeeec-CCCccEEEEEEecCCcc
Q 005690 449 LLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKL-RPGVNKISLLSTSVGLP 505 (683)
Q Consensus 449 ~L~i~~~~d~a~vfvng~~~G~~~~~~~~~~~~~~~~~~l-~~g~~~L~ILven~Gr~ 505 (683)
.|++.+-...++-||||+++|+.... ..+.+ .+ ..|.+.|++ ++..|+.
T Consensus 35 ~l~a~~~~~~~~W~vdg~~~g~~~~~---~~~~~----~~~~~G~h~l~v-vD~~G~~ 84 (89)
T PF06832_consen 35 VLKAAGGRGPVYWFVDGEPLGTTQPG---HQLFW----QPDRPGEHTLTV-VDAQGRS 84 (89)
T ss_pred EEEEeCCCCcEEEEECCEEcccCCCC---CeEEe----CCCCCeeEEEEE-EcCCCCE
Confidence 45655445699999999999876432 23332 33 578899987 7777764
No 96
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=61.27 E-value=47 Score=32.66 Aligned_cols=56 Identities=21% Similarity=0.217 Sum_probs=30.8
Q ss_pred CceEecCcceEEEEEECCEEEEEEEccc--C--CCe---eEEeeeeecCCCccEEEEEEecCCc
Q 005690 448 PLLTIWSAGHALQVFINGQLSGTVYGSL--E--NPK---LTFSKNVKLRPGVNKISLLSTSVGL 504 (683)
Q Consensus 448 ~~L~i~~~~d~a~vfvng~~~G~~~~~~--~--~~~---~~~~~~~~l~~g~~~L~ILven~Gr 504 (683)
..|.|.. ..+..+||||+.+|.-.-.. . ... .++...--|+.|.|+|.|++-+...
T Consensus 6 A~l~isa-~g~Y~l~vNG~~V~~~~l~P~~t~y~~~~~Y~tyDVt~~L~~G~N~iav~lg~gw~ 68 (172)
T PF08531_consen 6 ARLYISA-LGRYELYVNGERVGDGPLAPGWTDYDKRVYYQTYDVTPYLRPGENVIAVWLGNGWY 68 (172)
T ss_dssp -EEEEEE-ESEEEEEETTEEEEEE--------BTTEEEEEEEE-TTT--TTEEEEEEEEEE--S
T ss_pred EEEEEEe-CeeEEEEECCEEeeCCccccccccCCCceEEEEEeChHHhCCCCCEEEEEEeCCcc
Confidence 4566654 35778999999998754110 1 111 2333322378899999999976443
No 97
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=60.96 E-value=37 Score=40.71 Aligned_cols=111 Identities=14% Similarity=0.045 Sum_probs=66.2
Q ss_pred ccHHHHHHHHHHCCCCEEE---------------EcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEEeecCceec
Q 005690 14 QMWPDLIQKAKDGGLDVIQ---------------TYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVC 78 (683)
Q Consensus 14 ~~W~d~l~k~ka~G~N~V~---------------~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~VilrpGPyi~ 78 (683)
+--...|+++|++|+|||- .|+|| -|= ||+-|.= .-+ ...++.+.|+.|..+-.||--
T Consensus 334 ~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~-~~l--p~r~d~f--~~~--aw~l~~r~~v~v~AWmp~~~~ 406 (671)
T PRK14582 334 RNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPN-RLL--PMRADLF--NRV--AWQLRTRAGVNVYAWMPVLSF 406 (671)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCc-ccc--ccccCCc--CHH--HHHHHHhhCCEEEEeccceee
Confidence 4466789999999999985 46678 333 3333311 022 234488999999999999853
Q ss_pred c---------ccCCCCCCccccccCCeEeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccC
Q 005690 79 A---------EWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEF 142 (683)
Q Consensus 79 a---------Ew~~GG~P~WL~~~p~~~~Rt~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEy 142 (683)
+ +++..+-|.... |+-..| - .+|..++++|++.|..-|+.+ .+|=++|...+-
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~r-l-~P~~pe~r~~i~~i~~dla~~-------~~~dGilf~Dd~ 468 (671)
T PRK14582 407 DLDPTLPRVKRLDTGEGKAQIH--PEQYRR-L-SPFDDRVRAQVGMLYEDLAGH-------AAFDGILFHDDA 468 (671)
T ss_pred ccCCCcchhhhccccCCccccC--CCCCcC-C-CCCCHHHHHHHHHHHHHHHHh-------CCCceEEecccc
Confidence 1 111111111111 000112 1 357789999999999999843 255566655543
No 98
>PLN00196 alpha-amylase; Provisional
Probab=60.68 E-value=26 Score=39.79 Aligned_cols=57 Identities=14% Similarity=0.159 Sum_probs=39.9
Q ss_pred HHHHHHHHHCCCCEEEEc-ccCCc--cCCcCCe-ee-----eccchhHHHHHHHHHHcCcEEEeec
Q 005690 17 PDLIQKAKDGGLDVIQTY-VFWNG--HEPTQGN-YY-----FQDRYDLVRFIKLVQQAGLYVHLRI 73 (683)
Q Consensus 17 ~d~l~k~ka~G~N~V~~y-v~Wn~--hEp~~G~-~d-----F~G~~dl~~fl~~a~~~GL~Vilrp 73 (683)
.+.|.-+|++|+++|-+- ++=+. |--.+.. |+ |....+|.++++.|+++||.||+-.
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 467777899999999874 43221 2222222 22 3345799999999999999999874
No 99
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=59.98 E-value=25 Score=37.72 Aligned_cols=69 Identities=13% Similarity=0.105 Sum_probs=49.6
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcccCCccCCc-CCeeeeccc--hhHHHHHHHHHHcCcEEEeecCceecc
Q 005690 11 IWLQMWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVCA 79 (683)
Q Consensus 11 ~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~dF~G~--~dl~~fl~~a~~~GL~VilrpGPyi~a 79 (683)
...+.-++.++++|+.|+.+=..++=..++... -+.|.|+-. -|..++++..++.|++|++..=|+|+.
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~ 92 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQ 92 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 355678999999999997765444433333321 245666533 389999999999999999988888753
No 100
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=59.65 E-value=17 Score=39.09 Aligned_cols=59 Identities=22% Similarity=0.279 Sum_probs=40.2
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccc---CCccCCcCC--------eeeeccchhHHHHHHHHHHcCcEEEeec
Q 005690 12 WLQMWPDLIQKAKDGGLDVIQTYVF---WNGHEPTQG--------NYYFQDRYDLVRFIKLVQQAGLYVHLRI 73 (683)
Q Consensus 12 ~~~~W~d~l~k~ka~G~N~V~~yv~---Wn~hEp~~G--------~~dF~G~~dl~~fl~~a~~~GL~Vilrp 73 (683)
.+..-.++++-+|..|+|++-+=+= =++.=|... +=.|- |+..||+.|+|.|||+|.|.
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f~---Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKFK---DIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhcccccc---ccHHHHHHHHhcCeEEEEEE
Confidence 3456678899999999998864331 111111111 11233 99999999999999999996
No 101
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=59.43 E-value=29 Score=38.80 Aligned_cols=53 Identities=13% Similarity=0.194 Sum_probs=41.8
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEEeec
Q 005690 12 WLQMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 73 (683)
Q Consensus 12 ~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~Vilrp 73 (683)
..+.|+++++.+|++||+....=+- ....+.- .-|...++.|++.|++++|-+
T Consensus 15 t~~dw~~di~~A~~~GIDgFaLNig------~~d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 15 TQEDWEADIRLAQAAGIDGFALNIG------SSDSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecc------cCCcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 5689999999999999998877654 1222222 378888999999999999986
No 102
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=58.86 E-value=65 Score=33.49 Aligned_cols=92 Identities=13% Similarity=0.165 Sum_probs=59.1
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCccCCcCCe-eeeccchhHHHHHHHHHHcCcEEEeecCceeccccCCCCCCccccccC
Q 005690 16 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGN-YYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVP 94 (683)
Q Consensus 16 W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~-~dF~G~~dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~WL~~~p 94 (683)
-++.|+++.++|++.|+... .+|..-. -+++ ..+++++.+++++.||.|.+- +||.
T Consensus 12 ~~~~~~~~~~~G~~~vel~~----~~~~~~~~~~~~-~~~~~~l~~~~~~~gl~ls~h-~p~~----------------- 68 (273)
T smart00518 12 LYKAFIEAVDIGARSFQLFL----GNPRSWKGVRLS-EETAEKFKEALKENNIDVSVH-APYL----------------- 68 (273)
T ss_pred HhHHHHHHHHcCCCEEEEEC----CCCCCCCCCCCC-HHHHHHHHHHHHHcCCCEEEE-CCce-----------------
Confidence 45789999999999999843 2332210 0222 236889999999999986542 3432
Q ss_pred CeEeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEecc
Q 005690 95 GIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQ 137 (683)
Q Consensus 95 ~~~~Rt~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 137 (683)
+.+.+.++..+++..+++++.+...+ .+ |.++|-+.
T Consensus 69 -~nl~s~d~~~r~~~~~~l~~~i~~A~--~l----Ga~~vv~h 104 (273)
T smart00518 69 -INLASPDKEKVEKSIERLIDEIKRCE--EL----GIKALVFH 104 (273)
T ss_pred -ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 12345567777777777777777766 33 55666654
No 103
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=57.64 E-value=22 Score=43.80 Aligned_cols=62 Identities=18% Similarity=0.133 Sum_probs=43.6
Q ss_pred ccHHHHHHHHHHCCCCEEEEc-ccCC----ccCCcCC-----eeeeccchhHHHHHHHHHHcCcEEEeecCc
Q 005690 14 QMWPDLIQKAKDGGLDVIQTY-VFWN----GHEPTQG-----NYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 75 (683)
Q Consensus 14 ~~W~d~l~k~ka~G~N~V~~y-v~Wn----~hEp~~G-----~~dF~G~~dl~~fl~~a~~~GL~VilrpGP 75 (683)
+.+.+.|.-++++|+|+|-.- ++=+ .|--..- .-.|.+..++.+|++.|+++||.|||-.=|
T Consensus 20 ~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~ 91 (879)
T PRK14511 20 DDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVP 91 (879)
T ss_pred HHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 568899999999999999863 4311 1110000 112446789999999999999999987544
No 104
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=57.59 E-value=16 Score=43.94 Aligned_cols=55 Identities=15% Similarity=0.187 Sum_probs=36.9
Q ss_pred HHHHHHHCCCCEEEE-cccCCc-------------cCCcCCee-----ee---ccchhHHHHHHHHHHcCcEEEeec
Q 005690 19 LIQKAKDGGLDVIQT-YVFWNG-------------HEPTQGNY-----YF---QDRYDLVRFIKLVQQAGLYVHLRI 73 (683)
Q Consensus 19 ~l~k~ka~G~N~V~~-yv~Wn~-------------hEp~~G~~-----dF---~G~~dl~~fl~~a~~~GL~Vilrp 73 (683)
.|.-+|++|+|+|.. .|+=.. |--.+..| .| ....+|.++++.|+++||.|||-.
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 477899999999996 454111 11111111 12 124689999999999999999874
No 105
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=57.33 E-value=20 Score=47.01 Aligned_cols=57 Identities=16% Similarity=0.173 Sum_probs=43.4
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCcCC---ee----------eeccchhHHHHHHHHHHcCcEEEeec
Q 005690 14 QMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQG---NY----------YFQDRYDLVRFIKLVQQAGLYVHLRI 73 (683)
Q Consensus 14 ~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G---~~----------dF~G~~dl~~fl~~a~~~GL~Vilrp 73 (683)
+.|.+.|.-+|++|+|+|-.-=++ +..+| -| .|.+..|+.+|++.|+++||.|||-.
T Consensus 758 ~~~~~~l~Yl~~LGv~~i~lsPi~---~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDi 827 (1693)
T PRK14507 758 ADAEAILPYLAALGISHVYASPIL---KARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDI 827 (1693)
T ss_pred HHHHHHhHHHHHcCCCEEEECCCc---CCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 569999999999999999864222 22222 12 25577899999999999999999874
No 106
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=56.88 E-value=16 Score=46.71 Aligned_cols=56 Identities=25% Similarity=0.366 Sum_probs=38.9
Q ss_pred HHHHHHHHCCCCEEEE-cccCCccCCc---CC-----eee----------ec--cchhHHHHHHHHHHcCcEEEeec
Q 005690 18 DLIQKAKDGGLDVIQT-YVFWNGHEPT---QG-----NYY----------FQ--DRYDLVRFIKLVQQAGLYVHLRI 73 (683)
Q Consensus 18 d~l~k~ka~G~N~V~~-yv~Wn~hEp~---~G-----~~d----------F~--G~~dl~~fl~~a~~~GL~Vilrp 73 (683)
+.|.-+|++|+|+|.. .|+=...|.. .| -|+ |. +..++.++++.|+++||.|||-.
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 4567899999999996 4542222211 00 021 33 56799999999999999999873
No 107
>PRK12677 xylose isomerase; Provisional
Probab=56.71 E-value=94 Score=34.77 Aligned_cols=90 Identities=11% Similarity=0.116 Sum_probs=54.0
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeec---cchhHHHHHHHHHHcCcEEE-eecCceeccccCCCCCCcc
Q 005690 14 QMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ---DRYDLVRFIKLVQQAGLYVH-LRIGPYVCAEWNYGGFPVW 89 (683)
Q Consensus 14 ~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~---G~~dl~~fl~~a~~~GL~Vi-lrpGPyi~aEw~~GG~P~W 89 (683)
-.+.+++++++++|+..|+.. .+..--|+.+ -...+.++.+++++.||.|. +-|.-|.+..+..|+
T Consensus 31 ~~~~E~v~~~a~~Gf~gVElh------~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g~---- 100 (384)
T PRK12677 31 LDPVEAVHKLAELGAYGVTFH------DDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFKDGA---- 100 (384)
T ss_pred CCHHHHHHHHHHhCCCEEEec------ccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccccCCc----
Confidence 458899999999999999873 1111112211 11358899999999999976 544322111222222
Q ss_pred ccccCCeEeecCChhhHHHHHHHHHHHHHHHh
Q 005690 90 LKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMK 121 (683)
Q Consensus 90 L~~~p~~~~Rt~~~~y~~~~~~~~~~l~~~l~ 121 (683)
+-+.|+..++...+.+.+.++.-+
T Consensus 101 --------lts~d~~~R~~Ai~~~~r~IdlA~ 124 (384)
T PRK12677 101 --------FTSNDRDVRRYALRKVLRNIDLAA 124 (384)
T ss_pred --------CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 234456656665555666556555
No 108
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=56.26 E-value=11 Score=41.56 Aligned_cols=62 Identities=26% Similarity=0.263 Sum_probs=40.8
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEEeecCceecc
Q 005690 12 WLQMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCA 79 (683)
Q Consensus 12 ~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~VilrpGPyi~a 79 (683)
+.+....-|++|+++|+..|=| .+|.|+...=+. ...+..+++.|+++||.|++-..|=+..
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFT----SL~ipe~~~~~~--~~~~~~l~~~a~~~~~~v~~Disp~~l~ 73 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFT----SLHIPEDDPEDY--LERLKELLKLAKELGMEVIADISPKVLK 73 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEE----EE---------H--HHHHHHHHHHHHHCT-EEEEEE-CCHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEC----CCCcCCCCHHHH--HHHHHHHHHHHHHCCCEEEEECCHHHHH
Confidence 3578899999999999987655 688888543221 1478899999999999999998875543
No 109
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=55.24 E-value=12 Score=30.84 Aligned_cols=39 Identities=28% Similarity=0.548 Sum_probs=25.3
Q ss_pred ceEecCcceEEEEEECCEEEEEEEcccCCCeeEEeeeeecCCCccEEEE
Q 005690 449 LLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISL 497 (683)
Q Consensus 449 ~L~i~~~~d~a~vfvng~~~G~~~~~~~~~~~~~~~~~~l~~g~~~L~I 497 (683)
.|.|.+.-.-|.|||||+++|.. .+.+. .+..|.+.|.|
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~G~t-------p~~~~---~l~~G~~~v~v 41 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYIGTT-------PLTLK---DLPPGEHTVTV 41 (71)
T ss_pred EEEEEEECCCCEEEECCEEeccC-------cceee---ecCCccEEEEE
Confidence 46666555678999999999942 12221 25677766655
No 110
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=54.46 E-value=17 Score=38.03 Aligned_cols=52 Identities=19% Similarity=0.404 Sum_probs=38.7
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEEeecC
Q 005690 13 LQMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 74 (683)
Q Consensus 13 ~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~VilrpG 74 (683)
+...++-|+.+|++||++|++- .|..+.+ ..+..++|+.|+++|+.|+--.|
T Consensus 83 q~~~~~yl~~~k~lGf~~IEiS---------dGti~l~-~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEIS---------DGTIDLP-EEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----------SSS----HHHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEec---------CCceeCC-HHHHHHHHHHHHHCCCEEeeccc
Confidence 5678889999999999999873 4555444 34778999999999999998887
No 111
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=54.46 E-value=33 Score=36.92 Aligned_cols=68 Identities=21% Similarity=0.305 Sum_probs=51.2
Q ss_pred CCCCcccHHHHHHHHHHCCCC--EEEEcccCCccCCcCCeeeeccc--hhHHHHHHHHHHcCcEEEeecCceecc
Q 005690 9 FFIWLQMWPDLIQKAKDGGLD--VIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVCA 79 (683)
Q Consensus 9 ~r~~~~~W~d~l~k~ka~G~N--~V~~yv~Wn~hEp~~G~~dF~G~--~dl~~fl~~a~~~GL~VilrpGPyi~a 79 (683)
.....+.-++.++++++.|+. +|.+=..|- ..-|.|.|+-. -|..++++..++.|+++++..=|+|+.
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~---~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~ 96 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNWE---TCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINT 96 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCcc---ccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCC
Confidence 445667789999999999965 555444452 34566666532 389999999999999999998888864
No 112
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=51.23 E-value=86 Score=33.74 Aligned_cols=59 Identities=17% Similarity=0.209 Sum_probs=43.7
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcc----cCCcc-CCc--CCeeeeccchhHHHHHHHHHHcCcEEEeec
Q 005690 12 WLQMWPDLIQKAKDGGLDVIQTYV----FWNGH-EPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 73 (683)
Q Consensus 12 ~~~~W~d~l~k~ka~G~N~V~~yv----~Wn~h-Ep~--~G~~dF~G~~dl~~fl~~a~~~GL~Vilrp 73 (683)
+.+.-++.++.|...|+|.+..|+ ++.-+ |-. +|.|. ..|+.++++.|+++|+-||--+
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT---~~ei~ei~~yA~~~gI~vIPei 80 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYT---KEEIREIDDYAAELGIEVIPLI 80 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcC---HHHHHHHHHHHHHcCCEEEecC
Confidence 348889999999999999999875 23222 111 33343 3599999999999999999653
No 113
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=50.76 E-value=26 Score=44.38 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHcCcEEEeec
Q 005690 53 YDLVRFIKLVQQAGLYVHLRI 73 (683)
Q Consensus 53 ~dl~~fl~~a~~~GL~Vilrp 73 (683)
.+|.++++.|+++||.|||-.
T Consensus 555 ~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEec
Confidence 689999999999999999874
No 114
>PRK03705 glycogen debranching enzyme; Provisional
Probab=50.05 E-value=27 Score=41.86 Aligned_cols=55 Identities=20% Similarity=0.243 Sum_probs=36.4
Q ss_pred HHHHHHHCCCCEEEE-cccCCccCC-------------cCCee-----eecc-----chhHHHHHHHHHHcCcEEEeec
Q 005690 19 LIQKAKDGGLDVIQT-YVFWNGHEP-------------TQGNY-----YFQD-----RYDLVRFIKLVQQAGLYVHLRI 73 (683)
Q Consensus 19 ~l~k~ka~G~N~V~~-yv~Wn~hEp-------------~~G~~-----dF~G-----~~dl~~fl~~a~~~GL~Vilrp 73 (683)
.|.-+|++|+|+|.. .|+=...++ .+-.| .|.. ..+|.++++.|+++||.|||-.
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 588999999999986 343111111 11111 1222 2589999999999999999873
No 115
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=49.97 E-value=34 Score=40.75 Aligned_cols=76 Identities=14% Similarity=0.193 Sum_probs=54.7
Q ss_pred CcccHHHHHHHHHHCCCCEEEEc-cc-----CC--ccCCcCCeeee---------ccchhHHHHHHHHHHcCcEEEeec-
Q 005690 12 WLQMWPDLIQKAKDGGLDVIQTY-VF-----WN--GHEPTQGNYYF---------QDRYDLVRFIKLVQQAGLYVHLRI- 73 (683)
Q Consensus 12 ~~~~W~d~l~k~ka~G~N~V~~y-v~-----Wn--~hEp~~G~~dF---------~G~~dl~~fl~~a~~~GL~Vilrp- 73 (683)
.+.+|+ -++.+|+++|-+- ++ |. +---.-|-||- ....|++++++.|+++||.||+-.
T Consensus 76 ~~~~wd----yL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 76 DDALWK----ALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred ChHHHH----HHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 355666 7889999999863 33 43 22223455663 334799999999999999999652
Q ss_pred -------CceeccccCCCCCCcccc
Q 005690 74 -------GPYVCAEWNYGGFPVWLK 91 (683)
Q Consensus 74 -------GPyi~aEw~~GG~P~WL~ 91 (683)
-||.-||.+.+-+|.|.+
T Consensus 152 pnHTs~ghdF~lAr~~~~~Y~g~Y~ 176 (688)
T TIGR02455 152 PAHTGKGADFRLAELAHGDYPGLYH 176 (688)
T ss_pred CCCCCCCcchHHHhhcCCCCCCcee
Confidence 258888999888888873
No 116
>PLN03059 beta-galactosidase; Provisional
Probab=49.38 E-value=51 Score=40.45 Aligned_cols=70 Identities=24% Similarity=0.395 Sum_probs=47.4
Q ss_pred CCceEEEEEEECCCCC-------CCeEEecCCCc-eEEEEEcCccccccccCCCCCCCCCCCCCCCcccccccccCCCCC
Q 005690 573 QPMTWYKTTFNVPPGN-------DPLALDMGAMG-KGMVWINGQSIGRHWPGYIGNGNCGGCNYAGTYTEKKCRTYCGKP 644 (683)
Q Consensus 573 ~~~~fYk~~F~~~~~~-------d~~~Ld~~g~g-KG~vwVNG~nlGRYW~~~~~~G~~~~~~~~g~~~~~~~~~~~g~P 644 (683)
.+-.||+++|+++... +| .|.+.+.+ +.+|||||.-+|.-.-+. .+ +
T Consensus 469 ~dYlwY~t~i~~~~~~~~~~~~~~~-~L~v~~~~d~~~vFVNg~~~Gt~~~~~--~~----------------------~ 523 (840)
T PLN03059 469 TDYLWYMTEVHIDPDEGFLKTGQYP-VLTIFSAGHALHVFINGQLAGTVYGEL--SN----------------------P 523 (840)
T ss_pred CceEEEEEEEeecCCccccccCCCc-eEEEcccCcEEEEEECCEEEEEEEeec--CC----------------------c
Confidence 4678999999987532 23 46666654 889999999999876431 22 3
Q ss_pred eeeEeecCccc-ccCCCcEEEEE-EecC
Q 005690 645 SQRWYHVPRSW-LKPSGNLLVVF-EEWG 670 (683)
Q Consensus 645 qqtlYhVP~~~-Lk~g~N~Ivvf-Ee~g 670 (683)
+-+ ++.++ |+.|.|+|-|| |..|
T Consensus 524 ~~~---~~~~v~l~~g~n~L~iLse~vG 548 (840)
T PLN03059 524 KLT---FSQNVKLTVGINKISLLSVAVG 548 (840)
T ss_pred ceE---EecccccCCCceEEEEEEEeCC
Confidence 333 45442 67899999876 4444
No 117
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=47.64 E-value=7.8 Score=33.32 Aligned_cols=36 Identities=25% Similarity=0.542 Sum_probs=26.9
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHc
Q 005690 13 LQMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQA 65 (683)
Q Consensus 13 ~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~ 65 (683)
+..|-.-||.+.. .||.|..|||. +|.+||++|.|.
T Consensus 21 ~hhWLNflQaAyR--------------L~PgPS~~DF~---qLr~flk~alkT 56 (92)
T PF02228_consen 21 THHWLNFLQAAYR--------------LQPGPSSFDFH---QLRNFLKLALKT 56 (92)
T ss_dssp HHHHHHHHHHHHH--------------SS---STTTHH---HHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHh--------------cCCCCCcccHH---HHHHHHHHHHcC
Confidence 3568888887765 48999999999 999999999883
No 118
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=47.47 E-value=85 Score=32.58 Aligned_cols=114 Identities=11% Similarity=0.027 Sum_probs=62.6
Q ss_pred HHHCCCCEEEEcccCCccCCcCCeeeec-cchhHHHHHHHHHHcCcEEEeecCceeccccCCCCCCccccccCCeEeecC
Q 005690 23 AKDGGLDVIQTYVFWNGHEPTQGNYYFQ-DRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTD 101 (683)
Q Consensus 23 ~ka~G~N~V~~yv~Wn~hEp~~G~~dF~-G~~dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~WL~~~p~~~~Rt~ 101 (683)
+-...+..|..-.+ . =...|...+. +..++..+++.|++.|++|++..|= |..+.+ . .+ ..
T Consensus 18 ~~~~~lThv~~~f~-~--i~~~G~l~~~~~~~~~~~~~~~~~~~~~kvl~sigg-----~~~~~~---~----~~---~~ 79 (253)
T cd06545 18 IDFSKLTHINLAFA-N--PDANGTLNANPVRSELNSVVNAAHAHNVKILISLAG-----GSPPEF---T----AA---LN 79 (253)
T ss_pred CChhhCCeEEEEEE-E--ECCCCeEEecCcHHHHHHHHHHHHhCCCEEEEEEcC-----CCCCcc---h----hh---hc
Confidence 33344555543322 2 2235676664 3457889999999999999998862 222111 0 01 11
Q ss_pred ChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccCCCccccCCCCcHHHHHHHHHHHhhCC
Q 005690 102 NGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLN 168 (683)
Q Consensus 102 ~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g 168 (683)
++ +.-+++.+.|++.++++.+ =++.|+=|+.... ...-..+++.|++.+.+.+
T Consensus 80 ~~---~~r~~fi~~lv~~~~~~~~--------DGIdiDwE~~~~~---~~~~~~fv~~Lr~~l~~~~ 132 (253)
T cd06545 80 DP---AKRKALVDKIINYVVSYNL--------DGIDVDLEGPDVT---FGDYLVFIRALYAALKKEG 132 (253)
T ss_pred CH---HHHHHHHHHHHHHHHHhCC--------CceeEEeeccCcc---HhHHHHHHHHHHHHHhhcC
Confidence 23 2345788889988886544 2455666765321 0111345555666555433
No 119
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=47.35 E-value=39 Score=32.04 Aligned_cols=52 Identities=27% Similarity=0.519 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHcCcEEEeecCceeccccC-CCCCCccccccCCeEeecCChhhHHHHHHHHHHHHHHHhhc
Q 005690 53 YDLVRFIKLVQQAGLYVHLRIGPYVCAEWN-YGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAE 123 (683)
Q Consensus 53 ~dl~~fl~~a~~~GL~VilrpGPyi~aEw~-~GG~P~WL~~~p~~~~Rt~~~~y~~~~~~~~~~l~~~l~~~ 123 (683)
.||..||++|++.|+.|++=.-| +++.|- +-|+| .+.-+.++++|-.+++++
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~P-vNg~wydytG~~------------------~~~r~~~y~kI~~~~~~~ 88 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQP-VNGKWYDYTGLS------------------KEMRQEYYKKIKYQLKSQ 88 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-----HHHHHHTT--------------------HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCceEEEecC-CcHHHHHHhCCC------------------HHHHHHHHHHHHHHHHHC
Confidence 49999999999999999766545 555552 11211 356678899998888843
No 120
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=46.69 E-value=31 Score=39.84 Aligned_cols=113 Identities=12% Similarity=0.150 Sum_probs=85.4
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCccCCcC---CeeeeccchhHHHHHHHHHHcCcEEEeecCceeccccCCCCCCcccc
Q 005690 15 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQ---GNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 91 (683)
Q Consensus 15 ~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~---G~~dF~G~~dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~WL~ 91 (683)
.++++++.||++|++.-+.-|-|...=|.- +..+=.|..-...+|+...++|+..++-. | =| .+|.+|-
T Consensus 92 ~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL--f---Hw---DlPq~Le 163 (524)
T KOG0626|consen 92 RYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL--F---HW---DLPQALE 163 (524)
T ss_pred hhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE--e---cC---CCCHHHH
Confidence 589999999999999999999999988853 45777888888899999999999876543 1 13 4688886
Q ss_pred c-cCCeEeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEecc
Q 005690 92 Y-VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQ 137 (683)
Q Consensus 92 ~-~p~~~~Rt~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 137 (683)
+ +-+-.-+..=..|.+.++--|++...++| ....=|...|..++
T Consensus 164 DeYgGwLn~~ivedF~~yA~~CF~~fGDrVK--~WiT~NEP~v~s~~ 208 (524)
T KOG0626|consen 164 DEYGGWLNPEIVEDFRDYADLCFQEFGDRVK--HWITFNEPNVFSIG 208 (524)
T ss_pred HHhccccCHHHHHHHHHHHHHHHHHhcccce--eeEEecccceeeee
Confidence 5 34432232335688888888999999998 65444667776665
No 121
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=45.33 E-value=20 Score=36.09 Aligned_cols=66 Identities=20% Similarity=0.218 Sum_probs=38.7
Q ss_pred cCCCCcccHHHHHHHHHHCCCCEEEEcccCCccCCcCCee-eeccc--hhHHHHHHHHHHcCcEEEeecCceec
Q 005690 8 FFFIWLQMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNY-YFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVC 78 (683)
Q Consensus 8 ~~r~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~-dF~G~--~dl~~fl~~a~~~GL~VilrpGPyi~ 78 (683)
|++++.+|--..-+.+|+.|+.++-.---=..|-...=-| .--|. +|+.+ + +..-++|+||||..|
T Consensus 103 fykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd~sSrFlY~k~KGEvE~~v~e---L--~F~~~~i~RPG~ll~ 171 (238)
T KOG4039|consen 103 FYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGADPSSRFLYMKMKGEVERDVIE---L--DFKHIIILRPGPLLG 171 (238)
T ss_pred eEeechHHHHHHHHHHHhCCCeEEEEEeccCCCcccceeeeeccchhhhhhhh---c--cccEEEEecCcceec
Confidence 6788999999999999999998876433222222221111 11111 12111 1 123478999999876
No 122
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=44.89 E-value=75 Score=33.33 Aligned_cols=65 Identities=12% Similarity=0.175 Sum_probs=49.3
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCccCCcCCee--eeccc--hhHHHHHHHHHHcCcEEEeecCcee
Q 005690 12 WLQMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNY--YFQDR--YDLVRFIKLVQQAGLYVHLRIGPYV 77 (683)
Q Consensus 12 ~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~--dF~G~--~dl~~fl~~a~~~GL~VilrpGPyi 77 (683)
..+...+.++++++.||-.=.+.+=+...+. -+.| +|+-. -|..++++..++.|++|++..=|+|
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 22 DQDKVLEVIDGMRENDIPLDGFVLDDDYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred CHHHHHHHHHHHHHcCCCccEEEECcccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 4567889999999999986666655554443 3556 55422 3899999999999999999988877
No 123
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=41.93 E-value=1e+02 Score=24.95 Aligned_cols=56 Identities=20% Similarity=0.198 Sum_probs=38.8
Q ss_pred ceecccCCCC---cccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEEe
Q 005690 3 SFYFSFFFIW---LQMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 71 (683)
Q Consensus 3 e~~~~~~r~~---~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~Vil 71 (683)
+||.|-..+. ....++.++++|+.|++.|.+=-. . ++. ...+|.+++++.|+.||.
T Consensus 1 dlH~Ht~~S~~~~~~~~~~~~~~a~~~g~~~v~iTDh----~------~~~---~~~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 1 DLHVHSDYSLLDGALSPEELVKRAKELGLKAIAITDH----G------NLF---GAVEFYKAAKKAGIKPII 59 (67)
T ss_pred CCccccCCccccccCCHHHHHHHHHHcCCCEEEEeeC----C------ccc---CHHHHHHHHHHcCCeEEE
Confidence 3555555442 356889999999999999875321 0 222 456888999999998764
No 124
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=41.60 E-value=50 Score=34.51 Aligned_cols=52 Identities=12% Similarity=0.331 Sum_probs=41.6
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEEeecCc
Q 005690 14 QMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 75 (683)
Q Consensus 14 ~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~VilrpGP 75 (683)
...++-|+..|+.||++|++ ..|..+++ ..+..++|+.++++||.|+--.|.
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEi---------S~G~~~i~-~~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEI---------SDGSMEIS-LEERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEE---------cCCccCCC-HHHHHHHHHHHHhCCCeEeccccc
Confidence 56677778999999999986 35655554 457889999999999999977664
No 125
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=40.67 E-value=23 Score=34.80 Aligned_cols=53 Identities=25% Similarity=0.551 Sum_probs=30.0
Q ss_pred EEecCCCceEEEEEcCccccccccCCCCCCCCCCCCCCCcccccccccCCCCCeeeE---eecCcccccCCCcEEEEE
Q 005690 592 ALDMGAMGKGMVWINGQSIGRHWPGYIGNGNCGGCNYAGTYTEKKCRTYCGKPSQRW---YHVPRSWLKPSGNLLVVF 666 (683)
Q Consensus 592 ~Ld~~g~gKG~vwVNG~nlGRYW~~~~~~G~~~~~~~~g~~~~~~~~~~~g~Pqqtl---YhVP~~~Lk~g~N~Ivvf 666 (683)
.|..++-|+=.+||||+.+|+---. .| +. +| +...+ | ==.++|++|+|.|.|.
T Consensus 7 ~l~isa~g~Y~l~vNG~~V~~~~l~---P~-~t--~y---------------~~~~~Y~ty-DVt~~L~~G~N~iav~ 62 (172)
T PF08531_consen 7 RLYISALGRYELYVNGERVGDGPLA---PG-WT--DY---------------DKRVYYQTY-DVTPYLRPGENVIAVW 62 (172)
T ss_dssp EEEEEEESEEEEEETTEEEEEE--------------B---------------TTEEEEEEE-E-TTT--TTEEEEEEE
T ss_pred EEEEEeCeeEEEEECCEEeeCCccc---cc-cc--cC---------------CCceEEEEE-eChHHhCCCCCEEEEE
Confidence 4666777888899999999975421 22 00 01 22222 3 2256899999998874
No 126
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=40.37 E-value=45 Score=36.51 Aligned_cols=73 Identities=23% Similarity=0.279 Sum_probs=52.9
Q ss_pred CcceecccCC--CCcccHHHHHHHHHHCCCCEEEEcccCCccCCcCCe-eeeccchhHHHHHHHHHHcCcEEEeecCcee
Q 005690 1 MGSFYFSFFF--IWLQMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGN-YYFQDRYDLVRFIKLVQQAGLYVHLRIGPYV 77 (683)
Q Consensus 1 ~~e~~~~~~r--~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~-~dF~G~~dl~~fl~~a~~~GL~VilrpGPyi 77 (683)
|+++=||-|. .+.+.=..-|++|...||..|-| .+|.|++.. --|. -+.++++.|.++||+||+..-|-|
T Consensus 1 m~~~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~IFt----sl~~~~~~~~~~~~---~~~ell~~Anklg~~vivDvnPsi 73 (360)
T COG3589 1 MRMLGFSIFPNRSPKEKDIAYIDRMHKYGFKRIFT----SLLIPEEDAELYFH---RFKELLKEANKLGLRVIVDVNPSI 73 (360)
T ss_pred CcceeEEeccCCCcchhHHHHHHHHHHcCccceee----ecccCCchHHHHHH---HHHHHHHHHHhcCcEEEEEcCHHH
Confidence 6677777663 44445556688999999987655 567776642 1223 678899999999999999998877
Q ss_pred ccc
Q 005690 78 CAE 80 (683)
Q Consensus 78 ~aE 80 (683)
--|
T Consensus 74 l~~ 76 (360)
T COG3589 74 LKE 76 (360)
T ss_pred Hhh
Confidence 555
No 127
>PRK09989 hypothetical protein; Provisional
Probab=39.40 E-value=58 Score=33.74 Aligned_cols=43 Identities=19% Similarity=0.364 Sum_probs=34.6
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEEe
Q 005690 15 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 71 (683)
Q Consensus 15 ~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~Vil 71 (683)
-.+++|++++++|+..|++..+|. .+.++..++++++||.|..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~~--------------~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPYD--------------YSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCccc--------------CCHHHHHHHHHHcCCcEEE
Confidence 478999999999999999854332 2467788889999999874
No 128
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=39.35 E-value=1.7e+02 Score=32.92 Aligned_cols=140 Identities=14% Similarity=0.136 Sum_probs=69.5
Q ss_pred HHCCCCEEEEccc---------------CCccC---CcCCeeeeccchhHHHHHHHHHHcCcEEEeecCceeccccCCCC
Q 005690 24 KDGGLDVIQTYVF---------------WNGHE---PTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGG 85 (683)
Q Consensus 24 ka~G~N~V~~yv~---------------Wn~hE---p~~G~~dF~G~~dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG 85 (683)
|-+|||.++.-|- |-.-| +..|.|||+....=+.||++|++.|...++-. . =.
T Consensus 57 ~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aF---S------NS 127 (384)
T PF14587_consen 57 KGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADGSYDWDADAGQRWFLKAAKERGVNIFEAF---S------NS 127 (384)
T ss_dssp -S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS-B-TTSSHHHHHHHHHHHHTT---EEEE----------SS
T ss_pred CCceeeeeeeccccCCcccccCccCCCcccCCccccCCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEe---e------cC
Confidence 5689999886652 32222 45789999977777889999999999987653 1 13
Q ss_pred CCccccccCCe----EeecC-ChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccCCCcc-------ccCC-CC
Q 005690 86 FPVWLKYVPGI----EFRTD-NGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVE-------WDIG-AP 152 (683)
Q Consensus 86 ~P~WL~~~p~~----~~Rt~-~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~-------~~~~-~~ 152 (683)
.|.|+++.-.. ...++ -+...++-..|+..++++++.+.+ +|=-+=.=||--..- +.+. +.
T Consensus 128 PP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI------~f~~IsP~NEP~~~W~~~~QEG~~~~~~e 201 (384)
T PF14587_consen 128 PPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGI------NFDYISPFNEPQWNWAGGSQEGCHFTNEE 201 (384)
T ss_dssp S-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--------EEEEE--S-TTS-GG--SS-B----HHH
T ss_pred CCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCC------ccceeCCcCCCCCCCCCCCcCCCCCCHHH
Confidence 68888753210 00000 134567777888888888863322 333333347754221 0011 12
Q ss_pred cHHHHHHHHHHHhhCCCCcceeeecC
Q 005690 153 GKAYAKWAAQMAVGLNTGVPWVMCKQ 178 (683)
Q Consensus 153 ~~~y~~~l~~~~~~~g~~vp~~~~~~ 178 (683)
..+.++.|...+++.|+..-+..|+.
T Consensus 202 ~a~vI~~L~~~L~~~GL~t~I~~~Ea 227 (384)
T PF14587_consen 202 QADVIRALDKALKKRGLSTKISACEA 227 (384)
T ss_dssp HHHHHHHHHHHHHHHT-S-EEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCceEEecch
Confidence 46788889999999998876555544
No 129
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=38.46 E-value=71 Score=34.61 Aligned_cols=66 Identities=14% Similarity=0.171 Sum_probs=48.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCccCCcCC--eeeeccch--hHHHHHHHHHHcCcEEEeecCceec
Q 005690 12 WLQMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQG--NYYFQDRY--DLVRFIKLVQQAGLYVHLRIGPYVC 78 (683)
Q Consensus 12 ~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G--~~dF~G~~--dl~~fl~~a~~~GL~VilrpGPyi~ 78 (683)
..+.-++.++++++.||-.=.+.+=|.... ..+ .|+|+-.+ |..++|+..++.|++|++..=|+|+
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~ 91 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFG 91 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcC
Confidence 456678999999999887655554444333 234 77776443 8999999999999999987767663
No 130
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.18 E-value=11 Score=37.54 Aligned_cols=27 Identities=33% Similarity=0.539 Sum_probs=24.4
Q ss_pred eeeeccchhHHHHHHHHHHcCcEEEee
Q 005690 46 NYYFQDRYDLVRFIKLVQQAGLYVHLR 72 (683)
Q Consensus 46 ~~dF~G~~dl~~fl~~a~~~GL~Vilr 72 (683)
-|||-...+|..|+++|+++||.+-|.
T Consensus 160 lFdfm~~e~l~eFvd~Ah~hGL~~AlA 186 (235)
T COG1891 160 LFDFMDEEELEEFVDLAHEHGLEVALA 186 (235)
T ss_pred HHhhhcHHHHHHHHHHHHHcchHHHhc
Confidence 489988899999999999999998764
No 131
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=37.75 E-value=70 Score=34.61 Aligned_cols=67 Identities=15% Similarity=0.132 Sum_probs=48.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCccCC-----cCCeeeeccc--hhHHHHHHHHHHcCcEEEeecCceec
Q 005690 12 WLQMWPDLIQKAKDGGLDVIQTYVFWNGHEP-----TQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVC 78 (683)
Q Consensus 12 ~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp-----~~G~~dF~G~--~dl~~fl~~a~~~GL~VilrpGPyi~ 78 (683)
..+...+.++++|+.||-.=.+.+=+..+.. .-|.|+|+-. -|..++++..++.|++|++..=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCccc
Confidence 4566789999999999876555543333331 2356766533 38999999999999999998877775
No 132
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=37.56 E-value=2e+02 Score=33.43 Aligned_cols=247 Identities=16% Similarity=0.262 Sum_probs=118.6
Q ss_pred HHCCCCEEEEccc--------CCccCCcCCeee---ecc-c---hhHHHHHHHHHHc--CcEEEeecCceeccccCCCCC
Q 005690 24 KDGGLDVIQTYVF--------WNGHEPTQGNYY---FQD-R---YDLVRFIKLVQQA--GLYVHLRIGPYVCAEWNYGGF 86 (683)
Q Consensus 24 ka~G~N~V~~yv~--------Wn~hEp~~G~~d---F~G-~---~dl~~fl~~a~~~--GL~VilrpGPyi~aEw~~GG~ 86 (683)
+-+|++.+++.|- +.+-+ .|+.|+ |+= . ..+..+|+.|++. +|+++.-| | ..
T Consensus 110 ~G~g~s~~R~pIgssDfs~~~Yty~d-~~~D~~l~~Fs~~~~d~~~~ip~ik~a~~~~~~lki~aSp-------W---Sp 178 (496)
T PF02055_consen 110 DGIGYSLLRVPIGSSDFSTRPYTYDD-VPGDFNLSNFSIAREDKKYKIPLIKEALAINPNLKIFASP-------W---SP 178 (496)
T ss_dssp TTT---EEEEEES--SSSSS---ST--STTHTTTTT---HHHHHTTHHHHHHHHHHHHTT-EEEEEE-------S-----
T ss_pred CCceEEEEEeeccCcCCcCCcccccC-CCCCCccccCCccccchhhHHHHHHHHHHhCCCcEEEEec-------C---CC
Confidence 4479999998774 33332 233221 221 1 2235678888764 68888776 5 37
Q ss_pred CccccccCCe----Eee-cCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccCCCcc---ccCCC------C
Q 005690 87 PVWLKYVPGI----EFR-TDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVE---WDIGA------P 152 (683)
Q Consensus 87 P~WL~~~p~~----~~R-t~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~---~~~~~------~ 152 (683)
|+|++....+ .++ ...+.|.++..+|+.+-++.+++ +|=+|=++-+.||-.... ..+.. .
T Consensus 179 P~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~------~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~ 252 (496)
T PF02055_consen 179 PAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKK------EGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEE 252 (496)
T ss_dssp -GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHC------TT--ESEEESSSSCCGGGSTT-SSC--B--HHH
T ss_pred CHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHH------CCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHH
Confidence 9999874433 233 23457888888888888888773 355899999999976311 11111 2
Q ss_pred cHHHHH-HHHHHHhhCCC--CcceeeecCC--CCCC---cccc------CCC--Cccc---c-------ccCCCCCCCCc
Q 005690 153 GKAYAK-WAAQMAVGLNT--GVPWVMCKQD--DAPD---PVIN------TCN--GFYC---E-------KFVPNQNYKPK 206 (683)
Q Consensus 153 ~~~y~~-~l~~~~~~~g~--~vp~~~~~~~--~~~~---~~~~------t~~--g~~~---~-------~~~~~~p~~P~ 206 (683)
.++|+. .|.-++++.++ ++-++..+.. ..|. .++. -+. +++| + ......|++.+
T Consensus 253 ~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~~~~~~~~il~d~~A~~yv~GiA~HwY~g~~~~~~l~~~h~~~P~k~l 332 (496)
T PF02055_consen 253 QADFIKNYLGPALRKAGLGKDVKILIYDHNRDNLPDYADTILNDPEAAKYVDGIAFHWYGGDPSPQALDQVHNKFPDKFL 332 (496)
T ss_dssp HHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGGTTHHHHHHHTSHHHHTTEEEEEEEETTCS-HCHHHHHHHHHSTTSEE
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEecCCcccchhhhhhhcChhhHhheeEEEEECCCCCchhhHHHHHHHHCCCcEE
Confidence 356775 47778888876 6766665532 2221 1111 011 2222 1 11234689999
Q ss_pred eeeeccccccCccCCCCCCC---ChHHHHHHHHHHHHcCCeeeeeee------eccCCCCCCC-CCCCcccccCCCCCcC
Q 005690 207 MWTEAWTGWFTEFGSAVPTR---PAEDLVFSVARFIQSGGSFINYYM------YHGGTNFGRT-SGGFVATSYDYDAPID 276 (683)
Q Consensus 207 ~~~E~~~Gwf~~wG~~~~~~---~~~~~~~~~~~~l~~g~s~~n~YM------~hGGTNfG~~-~g~~~~tSYDy~Apl~ 276 (683)
+.||-..|.- .|+...... .++..+..+..-+..+++ ++-+ -.||-|++.- ..+.++..=
T Consensus 333 ~~TE~~~g~~-~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~--gw~~WNl~LD~~GGP~~~~n~~d~~iivd~------- 402 (496)
T PF02055_consen 333 LFTEACCGSW-NWDTSVDLGSWDRAERYAHDIIGDLNNWVS--GWIDWNLALDENGGPNWVGNFCDAPIIVDS------- 402 (496)
T ss_dssp EEEEEESS-S-TTS-SS-TTHHHHHHHHHHHHHHHHHTTEE--EEEEEESEBETTS---TT---B--SEEEEG-------
T ss_pred EeeccccCCC-CcccccccccHHHHHHHHHHHHHHHHhhce--eeeeeeeecCCCCCCcccCCCCCceeEEEc-------
Confidence 9999876531 122111111 123344444444556654 2222 2588887532 112211110
Q ss_pred ccCC-CCchhHHHHHHHHHHHH
Q 005690 277 EYGL-LNEPKWGHLRDLHKAIK 297 (683)
Q Consensus 277 E~G~-~~t~Ky~~lr~l~~~~~ 297 (683)
+.+. ..+|.|+.|..+.+|++
T Consensus 403 ~~~~~~~~p~yY~~gHfSKFV~ 424 (496)
T PF02055_consen 403 DTGEFYKQPEYYAMGHFSKFVR 424 (496)
T ss_dssp GGTEEEE-HHHHHHHHHHTTS-
T ss_pred CCCeEEEcHHHHHHHHHhcccC
Confidence 1121 23688999888776654
No 133
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=36.96 E-value=56 Score=36.86 Aligned_cols=55 Identities=22% Similarity=0.338 Sum_probs=40.0
Q ss_pred HHHHHHHHCCCCEEEE-ccc---CCccCCcCCee-----eeccchhHHHHHHHHHHcCcEEEee
Q 005690 18 DLIQKAKDGGLDVIQT-YVF---WNGHEPTQGNY-----YFQDRYDLVRFIKLVQQAGLYVHLR 72 (683)
Q Consensus 18 d~l~k~ka~G~N~V~~-yv~---Wn~hEp~~G~~-----dF~G~~dl~~fl~~a~~~GL~Vilr 72 (683)
+.|.-+|.+|+++|-+ .++ -..|.--.-.| .|.+..|+.++++.|++.||+||+-
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D 96 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILD 96 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 7888899999999964 233 22222111111 5777889999999999999999976
No 134
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=36.65 E-value=2.5e+02 Score=33.14 Aligned_cols=125 Identities=16% Similarity=0.287 Sum_probs=76.7
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEEeecCceeccccCCCCCCcccccc
Q 005690 14 QMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYV 93 (683)
Q Consensus 14 ~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~WL~~~ 93 (683)
+.-+-.|+.++++|+|+++.. . -|. ..-+.|-++|-+.||.|--.- -+.||-.
T Consensus 357 ~~~~~LL~Sv~e~~MN~lRVW---G-----GGv------YEsd~FY~lad~lGilVWQD~-MFACAlY------------ 409 (867)
T KOG2230|consen 357 AKTEFLLDSVAEVGMNMLRVW---G-----GGV------YESDYFYQLADSLGILVWQDM-MFACALY------------ 409 (867)
T ss_pred HHHHHHHHHHHHhCcceEEEe---c-----Ccc------ccchhHHHHhhhccceehhhh-HHHhhcc------------
Confidence 445566889999999999973 2 123 345699999999999774221 2344432
Q ss_pred CCeEeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccc--ccc-------CCCccccCCCCcHHHH----HHH
Q 005690 94 PGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQI--ENE-------FGPVEWDIGAPGKAYA----KWA 160 (683)
Q Consensus 94 p~~~~Rt~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi--ENE-------yg~~~~~~~~~~~~y~----~~l 160 (683)
-.|..|++.|+.=++.=+.+|+.|| .||.+-= ||| ||....+-...-++|. +-+
T Consensus 410 ------Pt~~eFl~sv~eEV~yn~~Rls~Hp-------SviIfsgNNENEaAl~~nWy~~sf~~~~~~~kdyvlly~~~i 476 (867)
T KOG2230|consen 410 ------PTNDEFLSSVREEVRYNAMRLSHHP-------SVIIFSGNNENEAALVQNWYGTSFERDRFESKDYVLLYANVI 476 (867)
T ss_pred ------cCcHHHHHHHHHHHHHHHHhhccCC-------eEEEEeCCCccHHHHHhhhhcccccccchhhhhhhHHHHHHH
Confidence 2357799888887777778888553 5666544 555 4422110011123443 345
Q ss_pred HHHHhhCCCCcceeeecC
Q 005690 161 AQMAVGLNTGVPWVMCKQ 178 (683)
Q Consensus 161 ~~~~~~~g~~vp~~~~~~ 178 (683)
+++...-.-..|+++...
T Consensus 477 ~el~l~~~~srPfi~SSP 494 (867)
T KOG2230|consen 477 HELKLVSHSSRPFIVSSP 494 (867)
T ss_pred HHHHhhcCCCCCceecCC
Confidence 555555566778887654
No 135
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=36.07 E-value=1.6e+02 Score=32.31 Aligned_cols=66 Identities=9% Similarity=0.079 Sum_probs=51.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccc--hhHHHHHHHHHHcCcEEEeecCceec
Q 005690 12 WLQMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVC 78 (683)
Q Consensus 12 ~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~--~dl~~fl~~a~~~GL~VilrpGPyi~ 78 (683)
..+..+++++++++.+|-.=.+++=|.++. .-+.|.|+.. -|..++++..++.|+++++..=|+|.
T Consensus 22 ~~~ev~~v~~~~r~~~IP~D~i~lDidy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~ 89 (332)
T cd06601 22 NRSDLEEVVEGYRDNNIPLDGLHVDVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS 89 (332)
T ss_pred CHHHHHHHHHHHHHcCCCCceEEEcCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee
Confidence 567789999999999987666665555443 3467777654 38899999999999999988888887
No 136
>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=35.93 E-value=23 Score=39.40 Aligned_cols=36 Identities=22% Similarity=0.413 Sum_probs=28.4
Q ss_pred HHHHHHHHHcCcEE-EeecCceeccccCCCCC--Cccccc
Q 005690 56 VRFIKLVQQAGLYV-HLRIGPYVCAEWNYGGF--PVWLKY 92 (683)
Q Consensus 56 ~~fl~~a~~~GL~V-ilrpGPyi~aEw~~GG~--P~WL~~ 92 (683)
++.++.|.+.||.| |.||| ||-|-...|-+ +.|+.+
T Consensus 176 E~Lvr~A~~rGLpv~I~Rpg-~I~gds~tG~~n~~D~~~R 214 (382)
T COG3320 176 EKLVREAGDRGLPVTIFRPG-YITGDSRTGALNTRDFLTR 214 (382)
T ss_pred HHHHHHHhhcCCCeEEEecC-eeeccCccCccccchHHHH
Confidence 56789999999997 89997 77777777665 677654
No 137
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=35.86 E-value=37 Score=33.08 Aligned_cols=63 Identities=17% Similarity=0.126 Sum_probs=42.4
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccC-CccCCc--CCeeeeccchhHHHHHHHHHHcCcEEEeecCce
Q 005690 13 LQMWPDLIQKAKDGGLDVIQTYVFW-NGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPY 76 (683)
Q Consensus 13 ~~~W~d~l~k~ka~G~N~V~~yv~W-n~hEp~--~G~~dF~G~~dl~~fl~~a~~~GL~VilrpGPy 76 (683)
.+..++.++.++++|...|.+...+ +.+... +..++.- ...|.++++.|++.|+.+.+.|-|+
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~i~lE~~~~ 135 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERL-AENLRELAEIAEEYGVRIALENHPG 135 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHH-HHHHHHHHHHHHHHTSEEEEE-SSS
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHH-HHHHHHHHhhhhhhcceEEEecccC
Confidence 3577888899999999999887663 122111 1112111 2478888999999999999998653
No 138
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=35.63 E-value=1.5e+02 Score=30.30 Aligned_cols=127 Identities=16% Similarity=0.174 Sum_probs=71.2
Q ss_pred cccHHHHHHHHHHCCCCE-EEE--cccCCccCC---cCCe--eee-----------cc--chhHHHHHHHHHHcCcEEEe
Q 005690 13 LQMWPDLIQKAKDGGLDV-IQT--YVFWNGHEP---TQGN--YYF-----------QD--RYDLVRFIKLVQQAGLYVHL 71 (683)
Q Consensus 13 ~~~W~d~l~k~ka~G~N~-V~~--yv~Wn~hEp---~~G~--~dF-----------~G--~~dl~~fl~~a~~~GL~Vil 71 (683)
++.-.+.++++|+.|+.+ |+| |++|...+. .-.. +|+ +| +..+-+.|+.+.+.|..+.+
T Consensus 53 ~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~~~~il~nl~~l~~~g~~v~i 132 (213)
T PRK10076 53 AEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVIP 132 (213)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEE
Confidence 455578899999999974 444 566533222 1122 232 22 23455667888888999988
Q ss_pred ecCceeccccCCCCCCccccccCCeEeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccc---------cccC
Q 005690 72 RIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQI---------ENEF 142 (683)
Q Consensus 72 rpGPyi~aEw~~GG~P~WL~~~p~~~~Rt~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi---------ENEy 142 (683)
|. |. +|++ ++++.-++++.+|++.+. +. ++ .++-++- --+|
T Consensus 133 R~-~v----------------IPg~---nd~~e~i~~ia~~l~~l~--~~--~~------~llpyh~~g~~Ky~~lg~~y 182 (213)
T PRK10076 133 RL-PL----------------IPGF---TLSRENMQQALDVLIPLG--IK--QI------HLLPFHQYGEPKYRLLGKTW 182 (213)
T ss_pred EE-EE----------------ECCC---CCCHHHHHHHHHHHHHcC--Cc--eE------EEecCCccchhHHHHcCCcC
Confidence 86 32 2443 345555666666655431 11 11 1111111 0022
Q ss_pred CCccccCCCCcHHHHHHHHHHHhhCCCCc
Q 005690 143 GPVEWDIGAPGKAYAKWAAQMAVGLNTGV 171 (683)
Q Consensus 143 g~~~~~~~~~~~~y~~~l~~~~~~~g~~v 171 (683)
-.. +...+..+.|+.+++.+++.|+.+
T Consensus 183 ~~~--~~~~~~~~~l~~~~~~~~~~gl~~ 209 (213)
T PRK10076 183 SMK--EVPAPSSADVATMREMAERAGFQV 209 (213)
T ss_pred ccC--CCCCcCHHHHHHHHHHHHHcCCeE
Confidence 110 123468899999999999988876
No 139
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=35.21 E-value=1.3e+02 Score=34.22 Aligned_cols=93 Identities=17% Similarity=0.277 Sum_probs=55.5
Q ss_pred CcccHHHHHHHHHHCCCCEEEEc-ccCCccCC----cCCeeee-----ccc-----hhHHHHHHHHH-HcCcEEEeecCc
Q 005690 12 WLQMWPDLIQKAKDGGLDVIQTY-VFWNGHEP----TQGNYYF-----QDR-----YDLVRFIKLVQ-QAGLYVHLRIGP 75 (683)
Q Consensus 12 ~~~~W~d~l~k~ka~G~N~V~~y-v~Wn~hEp----~~G~~dF-----~G~-----~dl~~fl~~a~-~~GL~VilrpGP 75 (683)
+=+.|+++|+.++++|+|+|..- +----... ...+..| +.. .++.++++.++ +.||.++.-.
T Consensus 20 ~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~Dv-- 97 (423)
T PF14701_consen 20 PFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDV-- 97 (423)
T ss_pred CHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEE--
Confidence 33689999999999999999842 21110000 0111111 111 49999999985 6899976543
Q ss_pred eeccccCCCC-CCccccccCCeEeecCChhhHHHHH
Q 005690 76 YVCAEWNYGG-FPVWLKYVPGIEFRTDNGPFKAAMH 110 (683)
Q Consensus 76 yi~aEw~~GG-~P~WL~~~p~~~~Rt~~~~y~~~~~ 110 (683)
=|+.-. ==.||...|+.-.-..+.++|+..-
T Consensus 98 ----V~NHtA~nS~Wl~eHPEagYN~~nsPHL~pA~ 129 (423)
T PF14701_consen 98 ----VLNHTANNSPWLREHPEAGYNLENSPHLRPAY 129 (423)
T ss_pred ----eeccCcCCChHHHhCcccccCCCCCcchhhHH
Confidence 122211 1368999898655445556665443
No 140
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=35.00 E-value=69 Score=36.05 Aligned_cols=70 Identities=14% Similarity=0.262 Sum_probs=47.3
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccc--hhHHHHHHHHHHcCcEEEeecCceeccccC
Q 005690 12 WLQMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVCAEWN 82 (683)
Q Consensus 12 ~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~--~dl~~fl~~a~~~GL~VilrpGPyi~aEw~ 82 (683)
..+...+.++.+|+.|+-.=...+-..+.. ..+.|.|+.. -|..++++.+++.|++|++..-|+|+-+-.
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~ 112 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSP 112 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTT
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCC
Confidence 356678999999999998766655433333 4445555533 289999999999999999998888875553
No 141
>PLN02784 alpha-amylase
Probab=34.80 E-value=83 Score=38.79 Aligned_cols=57 Identities=12% Similarity=0.075 Sum_probs=38.2
Q ss_pred HHHHHHHHHCCCCEEEEcccCCccC---CcCCe-ee----eccchhHHHHHHHHHHcCcEEEeec
Q 005690 17 PDLIQKAKDGGLDVIQTYVFWNGHE---PTQGN-YY----FQDRYDLVRFIKLVQQAGLYVHLRI 73 (683)
Q Consensus 17 ~d~l~k~ka~G~N~V~~yv~Wn~hE---p~~G~-~d----F~G~~dl~~fl~~a~~~GL~Vilrp 73 (683)
.++|.-++++|+++|-+.=+-.... -.+.. |+ |....+|..+++.|+++||.||+-.
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4556677999999998753321111 11111 22 3335799999999999999999873
No 142
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=34.71 E-value=2e+02 Score=26.41 Aligned_cols=71 Identities=14% Similarity=0.142 Sum_probs=40.7
Q ss_pred eEEEEEEecCCCCcccccCCCCCceEecCcceEEEEEECCEEEEEEEcccC-----CCeeEEeeeeecCC-CccEEEEEE
Q 005690 426 YLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLE-----NPKLTFSKNVKLRP-GVNKISLLS 499 (683)
Q Consensus 426 yl~Yrt~i~~~~~~~~~~~g~~~~L~i~~~~d~a~vfvng~~~G~~~~~~~-----~~~~~~~~~~~l~~-g~~~L~ILv 499 (683)
.+.|++.|..+.+.. -++.+. ..|.+.+||||+.+-...+... .........+.|.+ +.+.|.|..
T Consensus 47 ~~~~~G~~~~~~~G~-------y~f~~~-~~d~~~l~idg~~vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y 118 (145)
T PF07691_consen 47 SVRWTGYFKPPETGT-------YTFSLT-SDDGARLWIDGKLVIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEY 118 (145)
T ss_dssp EEEEEEEEEESSSEE-------EEEEEE-ESSEEEEEETTEEEEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEE
T ss_pred EEEEEEEEecccCce-------EEEEEE-ecccEEEEECCEEEEcCCccccccccccccceEEEEEEeeCCeeEEEEEEE
Confidence 467888888654432 134444 5688999999999977654322 00111122334555 468888876
Q ss_pred ecCCc
Q 005690 500 TSVGL 504 (683)
Q Consensus 500 en~Gr 504 (683)
.+.+.
T Consensus 119 ~~~~~ 123 (145)
T PF07691_consen 119 FNRGG 123 (145)
T ss_dssp EECSC
T ss_pred EECCC
Confidence 55443
No 143
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=34.39 E-value=60 Score=34.25 Aligned_cols=51 Identities=24% Similarity=0.264 Sum_probs=35.0
Q ss_pred HHHHHHHHHCCCCEEEEcccCC---ccCCcCCeeeeccchhHHHHHHHHHHcCcEEEe
Q 005690 17 PDLIQKAKDGGLDVIQTYVFWN---GHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 71 (683)
Q Consensus 17 ~d~l~k~ka~G~N~V~~yv~Wn---~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~Vil 71 (683)
++.+++||++|++.|...+- . .++..-+..+|+ +..+.++.|+++|+.|..
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~~~~s~~---~~~~ai~~l~~~Gi~v~~ 176 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLD-TSQEFYSNIISTHTYD---DRVDTLENAKKAGLKVCS 176 (296)
T ss_pred HHHHHHHHHcCCCEEEEccc-CCHHHHhhccCCCCHH---HHHHHHHHHHHcCCEEEE
Confidence 67899999999999887654 2 111111223444 667789999999998643
No 144
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=34.22 E-value=1e+02 Score=32.54 Aligned_cols=53 Identities=17% Similarity=0.307 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHcCcEEEeecCceeccccCCCCCCccccccCCeEeecCChhhHHHHHHHHH
Q 005690 54 DLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTE 114 (683)
Q Consensus 54 dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~WL~~~p~~~~Rt~~~~y~~~~~~~~~ 114 (683)
...+++..|++.|-.++|-|-. --||+|.|..- ++.+-+.++.=+++.++|++
T Consensus 38 K~~~~~~Eaa~~Ga~LV~fPEA------fiGGYPrg~~F--g~~~G~r~~eGR~ef~kY~a 90 (337)
T KOG0805|consen 38 KAEKYIVEAASKGAELVLFPEA------FIGGYPRGFRF--GLAVGVRNEEGRDEFRKYHA 90 (337)
T ss_pred HHHHHHHHHhcCCceEEEeehH------hccCCCCccee--eEEEeecchhhhHHHHHHHH
Confidence 5677899999999999998855 45999999875 33343334433455555544
No 145
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=33.82 E-value=1.1e+02 Score=33.80 Aligned_cols=53 Identities=17% Similarity=0.293 Sum_probs=36.3
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEEeec
Q 005690 15 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 73 (683)
Q Consensus 15 ~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~Vilrp 73 (683)
.|..-|+++++.|++.|..+...-.-....+. .-...+++.|+++||.|+.+.
T Consensus 246 ~~~~~l~~i~a~~a~~i~P~~~~l~~~~~~~~------~~~~~~v~~Ah~~GL~V~~WT 298 (356)
T cd08560 246 TWSPSMDELKARGVNIIAPPIWMLVDPDENGK------IVPSEYAKAAKAAGLDIITWT 298 (356)
T ss_pred cHHHHHHHHHhCCccEecCchhhccccccccc------cCCHHHHHHHHHcCCEEEEEE
Confidence 48888999999999987765433322211111 124588999999999998653
No 146
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=32.42 E-value=75 Score=33.94 Aligned_cols=89 Identities=16% Similarity=0.290 Sum_probs=57.5
Q ss_pred HHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEEeecCceec---------cccCCCCCCcc
Q 005690 19 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVC---------AEWNYGGFPVW 89 (683)
Q Consensus 19 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~VilrpGPyi~---------aEw~~GG~P~W 89 (683)
+|++--++|.+.+-|-.+ ||.+ .+.+|++.|++.|+.+=+-||...+ +||..--+|.|
T Consensus 153 ~L~~Ki~aGA~f~iTQ~~----------Fd~~---~~~~f~~~~~~~gi~~PIi~GI~pi~s~~~~~~~~~~~Gi~vP~~ 219 (281)
T TIGR00677 153 YLKEKVDAGADFIITQLF----------YDVD---NFLKFVNDCRAIGIDCPIVPGIMPINNYASFLRRAKWSKTKIPQE 219 (281)
T ss_pred HHHHHHHcCCCEeeccce----------ecHH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHhcCCCCCCHH
Confidence 444444689998888655 4444 7899999999997665444554433 57777778999
Q ss_pred ccccCCeEeecCChhhHHHHHHHHHHHHHHHh
Q 005690 90 LKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMK 121 (683)
Q Consensus 90 L~~~p~~~~Rt~~~~y~~~~~~~~~~l~~~l~ 121 (683)
+.+.=. ....+++...++--.+...+++.+.
T Consensus 220 l~~~l~-~~~~~~~~~~~~gi~~a~~~~~~l~ 250 (281)
T TIGR00677 220 IMSRLE-PIKDDDEAVRDYGIELIVEMCQKLL 250 (281)
T ss_pred HHHHHH-hccCCHHHHHHHHHHHHHHHHHHHH
Confidence 975210 0122334455666677777777777
No 147
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=32.03 E-value=1.1e+02 Score=32.99 Aligned_cols=66 Identities=11% Similarity=0.119 Sum_probs=47.4
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCccCC---cCCeeeeccc--hhHHHHHHHHHHcCcEEEeecCceec
Q 005690 13 LQMWPDLIQKAKDGGLDVIQTYVFWNGHEP---TQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVC 78 (683)
Q Consensus 13 ~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp---~~G~~dF~G~--~dl~~fl~~a~~~GL~VilrpGPyi~ 78 (683)
.+.-.+.++++++.+|-+=.+.+=+.+..- ....|+|.-. -|..++++..++.|++|++..=|+|+
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~ 98 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLL 98 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 456688899999999986666554332221 1234666432 38999999999999999998888775
No 148
>PLN02877 alpha-amylase/limit dextrinase
Probab=31.80 E-value=85 Score=39.27 Aligned_cols=21 Identities=19% Similarity=0.475 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHcCcEEEeec
Q 005690 53 YDLVRFIKLVQQAGLYVHLRI 73 (683)
Q Consensus 53 ~dl~~fl~~a~~~GL~Vilrp 73 (683)
.++.++++.|+++||.|||-.
T Consensus 466 ~efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 469999999999999999874
No 149
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=31.77 E-value=87 Score=34.29 Aligned_cols=68 Identities=9% Similarity=0.160 Sum_probs=51.8
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccc--hhH--HHHHHHHHHcCcEEEeecCceeccc
Q 005690 12 WLQMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDL--VRFIKLVQQAGLYVHLRIGPYVCAE 80 (683)
Q Consensus 12 ~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~--~dl--~~fl~~a~~~GL~VilrpGPyi~aE 80 (683)
..+.-++.++++++.||..=.+.+=+.++. .-+.|+|+.. -|. .++++..++.|++|++..=|+|+.+
T Consensus 22 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~ 93 (339)
T cd06602 22 NVDEVKEVVENMRAAGIPLDVQWNDIDYMD-RRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISAN 93 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECccccc-CccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccC
Confidence 457788999999999998666555444333 2467777654 377 9999999999999999888888753
No 150
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=31.47 E-value=1.6e+02 Score=31.71 Aligned_cols=59 Identities=14% Similarity=0.174 Sum_probs=46.3
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEccc----CCccCC----------------cCCeeeeccchhHHHHHHHHHHcCcEEE
Q 005690 11 IWLQMWPDLIQKAKDGGLDVIQTYVF----WNGHEP----------------TQGNYYFQDRYDLVRFIKLVQQAGLYVH 70 (683)
Q Consensus 11 ~~~~~W~d~l~k~ka~G~N~V~~yv~----Wn~hEp----------------~~G~~dF~G~~dl~~fl~~a~~~GL~Vi 70 (683)
.+.+..++.|+.|...++|++..++- |.+--+ ..|.|.- .|+.++++.|+++|+.||
T Consensus 13 ~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~---~di~elv~yA~~rgI~vi 89 (303)
T cd02742 13 LSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTY---AQLKDIIEYAAARGIEVI 89 (303)
T ss_pred cCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECH---HHHHHHHHHHHHcCCEEE
Confidence 35688999999999999999999876 755321 1233443 499999999999999998
Q ss_pred ee
Q 005690 71 LR 72 (683)
Q Consensus 71 lr 72 (683)
--
T Consensus 90 PE 91 (303)
T cd02742 90 PE 91 (303)
T ss_pred Ee
Confidence 54
No 151
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=31.41 E-value=2e+02 Score=29.49 Aligned_cols=90 Identities=8% Similarity=0.055 Sum_probs=64.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeec-cchhHHHHHHHHHHcCcEEEeecCceeccccCCCCCCccc
Q 005690 12 WLQMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ-DRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWL 90 (683)
Q Consensus 12 ~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~-G~~dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~WL 90 (683)
.+.+++..++.++++|+..+.+|..... ....|..+ |..|=..-+.+|+++|+ .+| -|-++
T Consensus 50 ~k~lt~~e~~~i~~~Gl~~~pIyq~~~~---~~~~~~~~~G~~dA~~A~~~A~~lG~----p~g-----------s~IYf 111 (212)
T cd06418 50 SKNLTATELETITAAGLKVFPIYQGGGY---SLDYFGYEQGVKDARDAVAAARALGF----PPG-----------TIIYF 111 (212)
T ss_pred CCCCCHHHHHHHHHCCCEEEEEEECCCc---cccccCHHHHHHHHHHHHHHHHHcCC----CCC-----------CEEEE
Confidence 4689999999999999999999988766 22333333 77899999999999988 222 23333
Q ss_pred cccCCeEeecCChhhHHHHHHHHHHHHHHHhhc
Q 005690 91 KYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAE 123 (683)
Q Consensus 91 ~~~p~~~~Rt~~~~y~~~~~~~~~~l~~~l~~~ 123 (683)
.-+.+. .+..+...+..|++.+...|+..
T Consensus 112 avD~d~----~~~~~~~~v~~Y~~a~~~~l~~~ 140 (212)
T cd06418 112 AVDFDA----LDDEVTEVILPYFRGWNDALHEA 140 (212)
T ss_pred EeecCC----CcchhHHHHHHHHHHHHHHHHhc
Confidence 222221 22336788999999999988844
No 152
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=30.70 E-value=2.4e+02 Score=30.78 Aligned_cols=121 Identities=17% Similarity=0.154 Sum_probs=72.6
Q ss_pred HHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEEeecCceeccccCCCCCCccccccCCeE
Q 005690 18 DLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIE 97 (683)
Q Consensus 18 d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~WL~~~p~~~ 97 (683)
..+...++.|.+||-.-..=+ =.||..+..+.+++.||.+|...|+|.-+.|+ .|+...|
T Consensus 52 ~e~~~~~a~Gg~TIVD~T~~~------------~GRdv~~m~~vs~atglnIV~~TGfy~~~~~p-----~~~~~~~--- 111 (316)
T COG1735 52 AELKRLMARGGQTIVDATNIG------------IGRDVLKMRRVAEATGLNIVAATGFYKAAFHP-----EYFALRP--- 111 (316)
T ss_pred HHHHHHHHcCCCeEeeCCccc------------cCcCHHHHHHHHHHhCCcEEEeccccccccch-----hHHhhCC---
Confidence 345666778988885432110 12799999999999999999999999988874 6765433
Q ss_pred eecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccCCCccccCCCCcHHHHHHHHHHHhhC-CCCcceeee
Q 005690 98 FRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGL-NTGVPWVMC 176 (683)
Q Consensus 98 ~Rt~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~-g~~vp~~~~ 176 (683)
++.+..-+.+.++ . .=.|+=|..=|=-|-|.+.. -...=.+-|+..+++. -.++|+.+-
T Consensus 112 -----------i~~~ae~~v~ei~--~---Gi~gT~ikAGiIk~~~~~~~----iTp~Eek~lrAaA~A~~~Tg~Pi~tH 171 (316)
T COG1735 112 -----------IEELAEFVVKEIE--E---GIAGTGIKAGIIKEAGGSPA----ITPLEEKSLRAAARAHKETGAPISTH 171 (316)
T ss_pred -----------HHHHHHHHHHHHH--h---cccCCccccceeeeccCccc----CCHHHHHHHHHHHHHhhhcCCCeEEe
Confidence 4445555555555 1 11244444444455565421 1222333444444432 357888876
Q ss_pred cC
Q 005690 177 KQ 178 (683)
Q Consensus 177 ~~ 178 (683)
++
T Consensus 172 t~ 173 (316)
T COG1735 172 TP 173 (316)
T ss_pred cc
Confidence 54
No 153
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=30.39 E-value=1e+02 Score=33.60 Aligned_cols=68 Identities=4% Similarity=0.000 Sum_probs=50.6
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccc--hhHHHHHHHHHHcCcEEEeecCceeccc
Q 005690 12 WLQMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVCAE 80 (683)
Q Consensus 12 ~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~--~dl~~fl~~a~~~GL~VilrpGPyi~aE 80 (683)
..+.-++.++++++.||..=.+.+=+.+. ...+.|+|+-. -|..+|++..++.|++|++..=|+|+.+
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~-~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~ 91 (339)
T cd06603 22 DQEDVKEVDAGFDEHDIPYDVIWLDIEHT-DGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRD 91 (339)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEChHHh-CCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecC
Confidence 35667888999999998865555433222 34566777643 2899999999999999999988998753
No 154
>KOG3833 consensus Uncharacterized conserved protein, contains RtcB domain [Function unknown]
Probab=30.37 E-value=52 Score=35.75 Aligned_cols=54 Identities=19% Similarity=0.225 Sum_probs=47.0
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcE--EE-eec
Q 005690 14 QMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLY--VH-LRI 73 (683)
Q Consensus 14 ~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~--Vi-lrp 73 (683)
-.|++++.+++..|+ +|+.--+--..|..|+.|. |+...+++|...||- +| |||
T Consensus 443 ~~~~sV~D~L~~~~I-~iR~aSpklvmEEAPesYK-----dVtdVVdtc~~aGiskK~~klrP 499 (505)
T KOG3833|consen 443 LTHESVLDKLRSRGI-AIRVASPKLVMEEAPESYK-----DVTDVVDTCDAAGISKKAIKLRP 499 (505)
T ss_pred CcHHHHHHHHHhCCe-EEEeCCccchhhhCchhhh-----hHHHHhhhhhhcccchhhhcccc
Confidence 369999999999998 6788888999999999996 999999999999985 44 776
No 155
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=28.50 E-value=1.1e+02 Score=32.80 Aligned_cols=61 Identities=18% Similarity=0.206 Sum_probs=42.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCccCC--cCCeeeeccchhHHHHHHHHHHcCcEEEeec
Q 005690 12 WLQMWPDLIQKAKDGGLDVIQTYVFWNGHEP--TQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 73 (683)
Q Consensus 12 ~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp--~~G~~dF~G~~dl~~fl~~a~~~GL~Vilrp 73 (683)
.++..++.++.+++.|.+.|-+|.-+..-.+ .++.-.++ ...+.+.+++|+++|+.|.+-.
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~-~e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFS-EEELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcC-HHHHHHHHHHHHHcCCEEEEEe
Confidence 4677899999999999999999874422111 12211122 2378899999999999887653
No 156
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=28.34 E-value=91 Score=34.11 Aligned_cols=61 Identities=15% Similarity=0.208 Sum_probs=46.7
Q ss_pred ceecccCCCCcccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEEee
Q 005690 3 SFYFSFFFIWLQMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 72 (683)
Q Consensus 3 e~~~~~~r~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~Vilr 72 (683)
+||.|-+-.....=++.|+++.++|++-|++-.+ .|+.=-. .-..+.|..|++.|+-|=+-
T Consensus 110 ~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~------~~~~~~~---e~~i~~l~~A~~~g~dvG~E 170 (353)
T COG2108 110 DFHIHLYTTGILATEEALKALAEAGLDEIRFHPP------RPGSKSS---EKYIENLKIAKKYGMDVGVE 170 (353)
T ss_pred ceeEEEeeccccCCHHHHHHHHhCCCCeEEecCC------Ccccccc---HHHHHHHHHHHHhCccceee
Confidence 5899988766677789999999999999998654 3333222 26778899999999977554
No 157
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.23 E-value=7.1e+02 Score=26.07 Aligned_cols=83 Identities=8% Similarity=0.040 Sum_probs=51.2
Q ss_pred HHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEE--EeecCceeccccCCCCCCccccccC
Q 005690 17 PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV--HLRIGPYVCAEWNYGGFPVWLKYVP 94 (683)
Q Consensus 17 ~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~V--ilrpGPyi~aEw~~GG~P~WL~~~p 94 (683)
.+.++.+++.|+++|++++-...- -..+.....+..+|-+.++++++.+ +.-=+||.
T Consensus 14 ~~a~~~~~~~G~~~~qif~~~P~~----w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~----------------- 72 (274)
T TIGR00587 14 QAAYNRAAEIGATAFMFFLKSPRW----WRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYL----------------- 72 (274)
T ss_pred HHHHHHHHHhCCCEEEEEecCccc----cCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCee-----------------
Confidence 568999999999999997632111 0111112237888888899998863 33335553
Q ss_pred CeEeecCChhhHHHHHHHHHHHHHHHh
Q 005690 95 GIEFRTDNGPFKAAMHKFTEKIVSMMK 121 (683)
Q Consensus 95 ~~~~Rt~~~~y~~~~~~~~~~l~~~l~ 121 (683)
+-+-+.|+.-+++..+.+.+.++.-+
T Consensus 73 -iNlas~~~~~r~~sv~~~~~~i~~A~ 98 (274)
T TIGR00587 73 -INLASPDEEKEEKSLDVLDEELKRCE 98 (274)
T ss_pred -eecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12334466666666666666666655
No 158
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=27.99 E-value=2.1e+02 Score=31.54 Aligned_cols=58 Identities=16% Similarity=0.166 Sum_probs=44.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccc----CCccC----------------------------CcCCeeeeccchhHHHHH
Q 005690 12 WLQMWPDLIQKAKDGGLDVIQTYVF----WNGHE----------------------------PTQGNYYFQDRYDLVRFI 59 (683)
Q Consensus 12 ~~~~W~d~l~k~ka~G~N~V~~yv~----Wn~hE----------------------------p~~G~~dF~G~~dl~~fl 59 (683)
+.+..++.|+.|...++|+...++- |.+-- +..|.|. ..|+.+++
T Consensus 16 ~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT---~~di~eiv 92 (357)
T cd06563 16 PVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYT---QEEIREIV 92 (357)
T ss_pred CHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceEC---HHHHHHHH
Confidence 5788999999999999999998763 32211 1123443 35999999
Q ss_pred HHHHHcCcEEEee
Q 005690 60 KLVQQAGLYVHLR 72 (683)
Q Consensus 60 ~~a~~~GL~Vilr 72 (683)
+.|+++|+.||--
T Consensus 93 ~yA~~rgI~VIPE 105 (357)
T cd06563 93 AYAAERGITVIPE 105 (357)
T ss_pred HHHHHcCCEEEEe
Confidence 9999999999964
No 159
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=27.97 E-value=1.1e+02 Score=33.23 Aligned_cols=66 Identities=5% Similarity=0.037 Sum_probs=48.7
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccc--hhHHHHHHHHHHcCcEEEeecCceec
Q 005690 12 WLQMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVC 78 (683)
Q Consensus 12 ~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~--~dl~~fl~~a~~~GL~VilrpGPyi~ 78 (683)
..+.-++.++++++.+|-.=.+.+=+.... .-+.|+|+.. -|..+|++..++.|++|++..=|+|.
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~ 89 (317)
T cd06600 22 PQDKVVEVVDIMQKEGFPYDVVFLDIHYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIR 89 (317)
T ss_pred CHHHHHHHHHHHHHcCCCcceEEEChhhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeecccc
Confidence 456779999999999987655544322222 3466777543 38999999999999999988877775
No 160
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=26.99 E-value=1.1e+02 Score=38.05 Aligned_cols=21 Identities=14% Similarity=0.426 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHcCcEEEeec
Q 005690 53 YDLVRFIKLVQQAGLYVHLRI 73 (683)
Q Consensus 53 ~dl~~fl~~a~~~GL~Vilrp 73 (683)
.++.++++.|+++||.|||-.
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV 424 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV 424 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 579999999999999999873
No 161
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=26.90 E-value=93 Score=37.59 Aligned_cols=54 Identities=28% Similarity=0.359 Sum_probs=39.8
Q ss_pred HHHHHHCCCCEEEE-cccCCccCCcC--------------------Ceeeecc-----chhHHHHHHHHHHcCcEEEeec
Q 005690 20 IQKAKDGGLDVIQT-YVFWNGHEPTQ--------------------GNYYFQD-----RYDLVRFIKLVQQAGLYVHLRI 73 (683)
Q Consensus 20 l~k~ka~G~N~V~~-yv~Wn~hEp~~--------------------G~~dF~G-----~~dl~~fl~~a~~~GL~Vilrp 73 (683)
|.-+|.+|+++|+. .|+.-..|+.. |.|-=.+ .+.+..+|+.++++||-|||-.
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDV 285 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDV 285 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEE
Confidence 88999999999996 57655555433 2232223 2578888999999999999874
No 162
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=26.60 E-value=79 Score=32.84 Aligned_cols=55 Identities=13% Similarity=0.003 Sum_probs=37.3
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCccCCcC----CeeeeccchhHHHHHHHHHHcCcEEEeec
Q 005690 15 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQ----GNYYFQDRYDLVRFIKLVQQAGLYVHLRI 73 (683)
Q Consensus 15 ~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~----G~~dF~G~~dl~~fl~~a~~~GL~Vilrp 73 (683)
.+++.++.++++|..+|.+ |..+.... -.++.. ...|.++.+.|++.|+.+.+-+
T Consensus 91 ~~~~~i~~a~~lGa~~i~~---~~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 91 MIKLAMDMAKEMNAGYTLI---SAAHAGYLTPPNVIWGRL-AENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHhCCCEEEE---cCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHcCCEEEEec
Confidence 5667778889999999965 22232211 111111 1368899999999999998887
No 163
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=26.10 E-value=1.2e+02 Score=32.15 Aligned_cols=57 Identities=18% Similarity=0.179 Sum_probs=45.2
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeec--cchhHHHHHHHHHHcCcEEEeec
Q 005690 13 LQMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ--DRYDLVRFIKLVQQAGLYVHLRI 73 (683)
Q Consensus 13 ~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~--G~~dl~~fl~~a~~~GL~Vilrp 73 (683)
++.=.+.-+++|++|+..++.|.+=+... -+.|. |...+..+-+.|++.||.++-.|
T Consensus 40 ~~~~~~~A~~lk~~g~~~~r~~~~kpRTs----~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~ 98 (266)
T PRK13398 40 EEQMVKVAEKLKELGVHMLRGGAFKPRTS----PYSFQGLGEEGLKILKEVGDKYNLPVVTEV 98 (266)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeecCCCC----CCccCCcHHHHHHHHHHHHHHcCCCEEEee
Confidence 45566778899999999999999874444 23565 57889999999999999888765
No 164
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=26.00 E-value=1.4e+02 Score=32.64 Aligned_cols=66 Identities=15% Similarity=0.178 Sum_probs=46.4
Q ss_pred cccHHHHHHHHHHCCCCEEEEcc----------cCCccCCc---------CCeeeeccc---hhHHHHHHHHHHcCcEEE
Q 005690 13 LQMWPDLIQKAKDGGLDVIQTYV----------FWNGHEPT---------QGNYYFQDR---YDLVRFIKLVQQAGLYVH 70 (683)
Q Consensus 13 ~~~W~d~l~k~ka~G~N~V~~yv----------~Wn~hEp~---------~G~~dF~G~---~dl~~fl~~a~~~GL~Vi 70 (683)
.+.-++.++++++.||..=.+++ .|+-..-. -+.++|... -|..++|+..++.|++|+
T Consensus 23 ~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~~Lh~~G~kv~ 102 (340)
T cd06597 23 QAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMIDELHEQGVKVL 102 (340)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHHHHHHCCCEEE
Confidence 45678899999999998655544 35432221 133444321 289999999999999999
Q ss_pred eecCceec
Q 005690 71 LRIGPYVC 78 (683)
Q Consensus 71 lrpGPyi~ 78 (683)
|..=|+|.
T Consensus 103 l~v~P~i~ 110 (340)
T cd06597 103 LWQIPIIK 110 (340)
T ss_pred EEecCccc
Confidence 98888875
No 165
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=25.96 E-value=69 Score=38.49 Aligned_cols=57 Identities=18% Similarity=0.311 Sum_probs=38.5
Q ss_pred HHHHHHHHHCCCCEEEE--------c-ccCCccCCc---C-Ceeeec----cchhHHHHHHHHHHcCcEEEeec
Q 005690 17 PDLIQKAKDGGLDVIQT--------Y-VFWNGHEPT---Q-GNYYFQ----DRYDLVRFIKLVQQAGLYVHLRI 73 (683)
Q Consensus 17 ~d~l~k~ka~G~N~V~~--------y-v~Wn~hEp~---~-G~~dF~----G~~dl~~fl~~a~~~GL~Vilrp 73 (683)
+++|..+|.+|+|+|+. | ..|.++--. | +.|-=. -.+++.+.++.|++.||.|||-.
T Consensus 258 eKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDV 331 (757)
T KOG0470|consen 258 EKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDV 331 (757)
T ss_pred hhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhh
Confidence 45689999999999984 2 235554310 0 111000 03589999999999999999875
No 166
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=25.78 E-value=2.4e+02 Score=30.25 Aligned_cols=115 Identities=17% Similarity=0.215 Sum_probs=66.9
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeec---cchhHHHHHHHHHHcCcEEEeecCceeccccCCCCCC--
Q 005690 13 LQMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ---DRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFP-- 87 (683)
Q Consensus 13 ~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~---G~~dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P-- 87 (683)
-+.-++-+.-+.++|+..|-+=.-|.. .-....+||+ ...||.++++-|++.|.-|+|.- +.|-..+..+
T Consensus 31 t~~~k~yIDfAa~~G~eYvlvD~GW~~-~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~----~~~~~~~~~~~~ 105 (273)
T PF10566_consen 31 TETQKRYIDFAAEMGIEYVLVDAGWYG-WEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWY----HSETGGNVANLE 105 (273)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEBTTCCG-S--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEE----ECCHTTBHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEecccccc-ccccccccccccCCccCHHHHHHHHHHcCCCEEEEE----eCCcchhhHhHH
Confidence 355667778889999999999888876 2234567776 34799999999999998888863 2222111111
Q ss_pred ----ccccc-----cCCeEeecCChhhHHHHHHHHHHHHHHHhhcccccccCCce
Q 005690 88 ----VWLKY-----VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPI 133 (683)
Q Consensus 88 ----~WL~~-----~p~~~~Rt~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpI 133 (683)
.+|.. +.++++=.-+. --+.+-+|+..|++.-++++|++.=.|++
T Consensus 106 ~~~~~~f~~~~~~Gv~GvKidF~~~-d~Q~~v~~y~~i~~~AA~~~LmvnfHg~~ 159 (273)
T PF10566_consen 106 KQLDEAFKLYAKWGVKGVKIDFMDR-DDQEMVNWYEDILEDAAEYKLMVNFHGAT 159 (273)
T ss_dssp CCHHHHHHHHHHCTEEEEEEE--SS-TSHHHHHHHHHHHHHHHHTT-EEEETTS-
T ss_pred HHHHHHHHHHHHcCCCEEeeCcCCC-CCHHHHHHHHHHHHHHHHcCcEEEecCCc
Confidence 11111 23344321111 12678889999999999888876555544
No 167
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=25.59 E-value=1.4e+02 Score=29.60 Aligned_cols=90 Identities=16% Similarity=0.268 Sum_probs=54.1
Q ss_pred cceecccCC---CCcccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeee--ecc-chhHHHHHHHHHHcCcEEEeecCc
Q 005690 2 GSFYFSFFF---IWLQMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYY--FQD-RYDLVRFIKLVQQAGLYVHLRIGP 75 (683)
Q Consensus 2 ~e~~~~~~r---~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~d--F~G-~~dl~~fl~~a~~~GL~VilrpGP 75 (683)
|-.||++.. .+.++.+.-++.++..++.. ...|--.|..++.+. .+- ...+.+|+++.+++|..+++-..+
T Consensus 56 G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~---~~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt~~ 132 (196)
T cd06416 56 DVYFFPCINCCGSAAGQVQTFLQYLKANGIKY---GTVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYSSQ 132 (196)
T ss_pred ceEEEecCCCCCCHHHHHHHHHHHHHhCCCce---eEEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEcCc
Confidence 445665554 24577888888888865432 112333443333322 111 146789999999999999998887
Q ss_pred eeccc----c---CCCCCCccccccC
Q 005690 76 YVCAE----W---NYGGFPVWLKYVP 94 (683)
Q Consensus 76 yi~aE----w---~~GG~P~WL~~~p 94 (683)
+--.. . +...+|.|+....
T Consensus 133 ~~w~~~~~~~~~~~~~~ypLWiA~Y~ 158 (196)
T cd06416 133 YDWSQIFGSSYTCNFSSLPLWYAHYD 158 (196)
T ss_pred chhccccCCCcCCCcCCCceEecCCC
Confidence 52111 1 1457899997643
No 168
>PLN02389 biotin synthase
Probab=25.17 E-value=90 Score=34.87 Aligned_cols=50 Identities=16% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCEEEEccc--CCccCCcCCeeeeccchhHHHHHHHHHHcCcEE
Q 005690 17 PDLIQKAKDGGLDVIQTYVF--WNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV 69 (683)
Q Consensus 17 ~d~l~k~ka~G~N~V~~yv~--Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~V 69 (683)
++.++++|++|++.+..-+- -.++...-..-+|+ +..+.++.|++.|+.|
T Consensus 178 ~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e---~rl~ti~~a~~~Gi~v 229 (379)
T PLN02389 178 KEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYD---DRLETLEAVREAGISV 229 (379)
T ss_pred HHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHH---HHHHHHHHHHHcCCeE
No 169
>PRK09875 putative hydrolase; Provisional
Probab=25.17 E-value=4e+02 Score=28.68 Aligned_cols=60 Identities=13% Similarity=0.095 Sum_probs=45.0
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEEeecCceeccccCCCCCCccccc
Q 005690 16 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 92 (683)
Q Consensus 16 W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~WL~~ 92 (683)
=.+.|+.+|++|.+||---.+..+ .+|...+.+++++-|+.||...|-|.-. -+|.|+..
T Consensus 36 ~~~el~~~~~~Gg~tiVd~T~~g~------------GRd~~~l~~is~~tgv~Iv~~TG~y~~~-----~~p~~~~~ 95 (292)
T PRK09875 36 ICQEMNDLMTRGVRNVIEMTNRYM------------GRNAQFMLDVMRETGINVVACTGYYQDA-----FFPEHVAT 95 (292)
T ss_pred HHHHHHHHHHhCCCeEEecCCCcc------------CcCHHHHHHHHHHhCCcEEEcCcCCCCc-----cCCHHHhc
Confidence 345678889999999853333222 3799999999999999999999998532 26788763
No 170
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=25.08 E-value=1.1e+02 Score=33.05 Aligned_cols=58 Identities=16% Similarity=0.185 Sum_probs=41.3
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccc----CCccCC------cCC---------eeeeccchhHHHHHHHHHHcCcEEEee
Q 005690 12 WLQMWPDLIQKAKDGGLDVIQTYVF----WNGHEP------TQG---------NYYFQDRYDLVRFIKLVQQAGLYVHLR 72 (683)
Q Consensus 12 ~~~~W~d~l~k~ka~G~N~V~~yv~----Wn~hEp------~~G---------~~dF~G~~dl~~fl~~a~~~GL~Vilr 72 (683)
+.+.-++.|+.|-..++|++..++- |.+--+ ..| .|.- .|+.++++.|+++|+.||--
T Consensus 16 ~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~---~di~~lv~yA~~~gI~VIPe 92 (351)
T PF00728_consen 16 SVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTK---EDIRELVAYAKERGIEVIPE 92 (351)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEH---HHHHHHHHHHHHTT-EEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCH---HHHHHHHHHHHHcCCceeee
Confidence 5688899999999999999998874 333221 122 3333 49999999999999999854
No 171
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=24.90 E-value=78 Score=33.12 Aligned_cols=48 Identities=25% Similarity=0.452 Sum_probs=35.1
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEE-eecCceecc
Q 005690 14 QMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCA 79 (683)
Q Consensus 14 ~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~Vi-lrpGPyi~a 79 (683)
+.-.+.++++|++|+ -|+.++ +|.+ +-+++|++.|-..| |-+|||..+
T Consensus 113 ~~l~~~i~~L~~~gI-rVSLFi-----dP~~------------~qi~~A~~~GAd~VELhTG~yA~a 161 (239)
T PRK05265 113 DKLKPAIARLKDAGI-RVSLFI-----DPDP------------EQIEAAAEVGADRIELHTGPYADA 161 (239)
T ss_pred HHHHHHHHHHHHCCC-EEEEEe-----CCCH------------HHHHHHHHhCcCEEEEechhhhcC
Confidence 455677888888888 566665 3433 44788888888877 889998865
No 172
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=24.64 E-value=56 Score=35.91 Aligned_cols=53 Identities=11% Similarity=0.156 Sum_probs=35.4
Q ss_pred ccHHHHHHHHHHCCCCEEE-----EcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEE
Q 005690 14 QMWPDLIQKAKDGGLDVIQ-----TYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV 69 (683)
Q Consensus 14 ~~W~d~l~k~ka~G~N~V~-----~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~V 69 (683)
..-++.|+++|++|++.+. ++..--++.-.++....+ +..+.++.|++.|+.+
T Consensus 147 ~~~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~---~~l~~i~~a~~~Gi~~ 204 (351)
T TIGR03700 147 LPTEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAE---RWLEIHRTAHELGLKT 204 (351)
T ss_pred CCHHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHH---HHHHHHHHHHHcCCCc
Confidence 3467889999999997654 232222333345543333 5668899999999976
No 173
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=24.57 E-value=1.2e+02 Score=27.71 Aligned_cols=45 Identities=16% Similarity=0.182 Sum_probs=31.5
Q ss_pred CCCcccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEE
Q 005690 10 FIWLQMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH 70 (683)
Q Consensus 10 r~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~Vi 70 (683)
-.+++...+.++.++++|+..|-..-- ..-.+++++|+++||.++
T Consensus 62 ~~~~~~~~~~v~~~~~~g~~~v~~~~g----------------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 62 CVPPDKVPEIVDEAAALGVKAVWLQPG----------------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp -S-HHHHHHHHHHHHHHT-SEEEE-TT----------------S--HHHHHHHHHTT-EEE
T ss_pred EcCHHHHHHHHHHHHHcCCCEEEEEcc----------------hHHHHHHHHHHHcCCEEE
Confidence 357889999999999999887654321 366789999999999876
No 174
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=24.51 E-value=1.2e+02 Score=31.96 Aligned_cols=49 Identities=20% Similarity=0.201 Sum_probs=30.6
Q ss_pred HHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEEeecC
Q 005690 20 IQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 74 (683)
Q Consensus 20 l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~VilrpG 74 (683)
..++|++|++.|-+. |..++-.|. +.+..+.+=++.|.++||.+|++.|
T Consensus 79 ~~mLkd~G~~~viiG-----HSERR~~f~-Etd~~v~~K~~~a~~~gl~pIvCiG 127 (250)
T PRK00042 79 AEMLKDLGVKYVIIG-----HSERRQYFG-ETDELVNKKVKAALKAGLTPILCVG 127 (250)
T ss_pred HHHHHHCCCCEEEeC-----cccccCccC-cCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 356778888776653 333333332 1223344445559999999999987
No 175
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=23.73 E-value=1.5e+02 Score=32.32 Aligned_cols=67 Identities=13% Similarity=0.111 Sum_probs=48.6
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccc--hhHHHHHHHHHHcCcEEEeecCceecc
Q 005690 12 WLQMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVCA 79 (683)
Q Consensus 12 ~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~--~dl~~fl~~a~~~GL~VilrpGPyi~a 79 (683)
..+..++.++++++.||-.=.+.+=+.+.. .-+.|+|+-. -|..++++..++.|++|++..=|+|+.
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~ 90 (339)
T cd06604 22 PEEEVREIADEFRERDIPCDAIYLDIDYMD-GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKV 90 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECchhhC-CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeC
Confidence 446678999999999987644444333322 3455666543 378999999999999999888888863
No 176
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=23.22 E-value=1e+02 Score=32.80 Aligned_cols=52 Identities=25% Similarity=0.272 Sum_probs=37.5
Q ss_pred CCCcceEEEEEEecCCCCcccccCCCCCceEecCcceEEEEEECCEEEEEEEc
Q 005690 421 ADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYG 473 (683)
Q Consensus 421 ~d~~Gyl~Yrt~i~~~~~~~~~~~g~~~~L~i~~~~d~a~vfvng~~~G~~~~ 473 (683)
.|-.|.+||+-++.++... ..-.++...|++.+++-.|.|||||.-+=...+
T Consensus 84 rdfv~~~wyer~v~vpe~w-~~~~~~r~vlr~~s~H~~Aivwvng~~~~~h~g 135 (297)
T KOG2024|consen 84 RDFVGLVWYERTVTVPESW-TQDLGKRVVLRIGSAHSYAIVWVNGVDALEHEG 135 (297)
T ss_pred ccceeeeEEEEEEEcchhh-hhhcCCeEEEEeecccceeEEEEcceeeccccc
Confidence 3567889999988764221 122345678999999999999999987655433
No 177
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=22.98 E-value=2.1e+02 Score=30.58 Aligned_cols=65 Identities=15% Similarity=0.261 Sum_probs=46.8
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccc--CCccC------CcCCeeeeccc--hhHHHHHHHHHHcCcEEEeecCce
Q 005690 12 WLQMWPDLIQKAKDGGLDVIQTYVF--WNGHE------PTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPY 76 (683)
Q Consensus 12 ~~~~W~d~l~k~ka~G~N~V~~yv~--Wn~hE------p~~G~~dF~G~--~dl~~fl~~a~~~GL~VilrpGPy 76 (683)
..+.-++.++++|+.||-+=.+++= |.... ..-+.|+|+-. -|..++++..++.|++|++-.=|+
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~ 97 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPA 97 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCC
Confidence 4566789999999999886555543 43321 12356777643 399999999999999999876554
No 178
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=22.59 E-value=1.1e+02 Score=31.77 Aligned_cols=59 Identities=17% Similarity=0.057 Sum_probs=37.5
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCcC-CeeeeccchhHHHHHHHHHHcCcEEEeec
Q 005690 14 QMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQ-GNYYFQDRYDLVRFIKLVQQAGLYVHLRI 73 (683)
Q Consensus 14 ~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~-G~~dF~G~~dl~~fl~~a~~~GL~Vilrp 73 (683)
+.+++.++.++++|.+.|.+.-+-...++.. -.++. -...|.+++++|+++|+.+.+-+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQR-FIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHH-HHHHHHHHHHHHHHhCCEEEEEe
Confidence 4578888899999999998631100001111 00110 11467888999999999998876
No 179
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=22.25 E-value=1.1e+02 Score=31.67 Aligned_cols=60 Identities=10% Similarity=-0.061 Sum_probs=38.2
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEEeec
Q 005690 14 QMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 73 (683)
Q Consensus 14 ~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~Vilrp 73 (683)
+..++.++.++++|..+|.+...+.-....+.+..-.-...|.++.++|++.|+.+.+-|
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 446788888999999999764333211111111100112466788889999999999987
No 180
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=21.99 E-value=1.7e+02 Score=30.57 Aligned_cols=49 Identities=22% Similarity=0.265 Sum_probs=35.1
Q ss_pred HHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEEeecC
Q 005690 20 IQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 74 (683)
Q Consensus 20 l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~VilrpG 74 (683)
..++|++|++.|-+. +-| ++--|. +.+.++.+=++.|.++||.+|++.|
T Consensus 77 ~~mL~d~G~~~viiG----HSE-RR~~f~-Et~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 77 AEMLKDAGAKYVIIG----HSE-RRQYFG-ETDEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred HHHHHHcCCCEEEeC----ccc-ccCcCC-CCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 457888888877653 333 332232 2356888889999999999999987
No 181
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.77 E-value=1.8e+02 Score=22.62 Aligned_cols=55 Identities=15% Similarity=0.315 Sum_probs=38.7
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEE
Q 005690 13 LQMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV 69 (683)
Q Consensus 13 ~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~V 69 (683)
|..-.+.+.-+.+.|+|.++++. +.........+-|.-. +.++.++..+++|..|
T Consensus 10 pG~L~~i~~~l~~~~~nI~~i~~-~~~~~~~~~~v~~~ve-~~~~~~~~L~~~G~~v 64 (65)
T cd04882 10 PGGLHEILQILSEEGINIEYMYA-FVEKKGGKALLIFRTE-DIEKAIEVLQERGVEL 64 (65)
T ss_pred CcHHHHHHHHHHHCCCChhheEE-EccCCCCeEEEEEEeC-CHHHHHHHHHHCCceE
Confidence 45567788889999999998886 3322234455555422 4889999999999765
No 182
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=21.66 E-value=2e+02 Score=27.26 Aligned_cols=91 Identities=13% Similarity=0.187 Sum_probs=45.6
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeec-cchhHHHHHHHHHHcCcEEEeecCceeccccCCCCCCccc
Q 005690 12 WLQMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ-DRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWL 90 (683)
Q Consensus 12 ~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~-G~~dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~WL 90 (683)
.+.+.+..++.|+++|+..+.+|.....+. ......++ |..|=..-+..|+++|+. . |-|-++
T Consensus 36 ~k~Lt~~e~~~i~~~Gl~i~pIyq~~~~~~-~~~~~~~~~G~~dA~~A~~~A~~lG~p----~-----------gt~IYf 99 (136)
T PF08924_consen 36 QKNLTAGEVQDIRAAGLRIFPIYQGGGRET-SDFTYGYAQGVADARDAVAAARALGFP----A-----------GTPIYF 99 (136)
T ss_dssp --B--HHHHHHHHHTT-EEEEEE---------S-B--HHHHHHHHHHHHHHHHHTT------S-----------S-EEEE
T ss_pred cCCCCHHHHHHHHHCCCEEEEEEecccccc-cccccHHHHHHHHHHHHHHHHHHcCCC----C-----------CCEEEE
Confidence 468899999999999999999998872221 11111222 567888999999999983 1 233333
Q ss_pred cccCCeEeecCChhhHHHHHHHHHHHHHHHhh
Q 005690 91 KYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKA 122 (683)
Q Consensus 91 ~~~p~~~~Rt~~~~y~~~~~~~~~~l~~~l~~ 122 (683)
.-+ .-..+..+.+.+..|++.+...|+.
T Consensus 100 avD----~d~~~~~~~~~i~~Y~~g~~~~l~~ 127 (136)
T PF08924_consen 100 AVD----YDATDAECDSAILPYFRGWNSALGA 127 (136)
T ss_dssp E------TS-B-HH-------HHHHHHHHHGG
T ss_pred Eee----cCCCchhhhhHHHHHHHHHHHHHhh
Confidence 211 1124566778888888888888874
No 183
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=21.62 E-value=4.2e+02 Score=27.50 Aligned_cols=102 Identities=14% Similarity=0.074 Sum_probs=53.2
Q ss_pred cccHHHHHHHHHHCCCCEEEEc--ccC--CccCCcCCeeeeccchhHHHHHHHHHHcCcEEEeecCceeccccCCCCCCc
Q 005690 13 LQMWPDLIQKAKDGGLDVIQTY--VFW--NGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPV 88 (683)
Q Consensus 13 ~~~W~d~l~k~ka~G~N~V~~y--v~W--n~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~VilrpGPyi~aEw~~GG~P~ 88 (683)
++.-+...+.+++.|+.....- .+. ++..+.+..-+ .....+.+.|++|++.|..+|.-+| .+.
T Consensus 56 ~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~~~i~~a~~lG~~~i~~~~-----------~~~ 123 (283)
T PRK13209 56 REQRLALVNALVETGFRVNSMCLSAHRRFPLGSEDDAVRA-QALEIMRKAIQLAQDLGIRVIQLAG-----------YDV 123 (283)
T ss_pred HHHHHHHHHHHHHcCCceeEEecccccccCCCCCCHHHHH-HHHHHHHHHHHHHHHcCCCEEEECC-----------ccc
Confidence 4445555667778999876542 111 11111111000 0123578889999999998764321 121
Q ss_pred cccccCCeEeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccCC
Q 005690 89 WLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFG 143 (683)
Q Consensus 89 WL~~~p~~~~Rt~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg 143 (683)
|.. ..++...+.+...++.|++..+++ | |-+.+||-.+
T Consensus 124 ~~~--------~~~~~~~~~~~~~l~~l~~~A~~~-------G--V~i~iE~~~~ 161 (283)
T PRK13209 124 YYE--------QANNETRRRFIDGLKESVELASRA-------S--VTLAFEIMDT 161 (283)
T ss_pred ccc--------ccHHHHHHHHHHHHHHHHHHHHHh-------C--CEEEEeecCC
Confidence 211 112333455555667777777633 3 4566788543
No 184
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=21.50 E-value=1.5e+02 Score=31.39 Aligned_cols=45 Identities=22% Similarity=0.391 Sum_probs=33.9
Q ss_pred HHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEEeec
Q 005690 17 PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 73 (683)
Q Consensus 17 ~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~Vilrp 73 (683)
.+.++.+.+.|+..|++.+..+ +++ .+...++.|+++|+.|.+-+
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~---------~~~---~~~~~i~~ak~~G~~v~~~~ 129 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH---------EFD---EALPLIKAIKEKGYEVFFNL 129 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc---------cHH---HHHHHHHHHHHCCCeEEEEE
Confidence 3556777788888888877554 333 78888999999999887653
No 185
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=21.37 E-value=1.9e+02 Score=33.19 Aligned_cols=52 Identities=19% Similarity=0.226 Sum_probs=39.9
Q ss_pred CCCCcccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEEee
Q 005690 9 FFIWLQMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 72 (683)
Q Consensus 9 ~r~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~Vilr 72 (683)
.+.|.+.=++.++++.++|+..|+++++-|.. .++...++.|+++|+.|.+.
T Consensus 91 ~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~v~~ak~~G~~v~~~ 142 (448)
T PRK12331 91 RNYADDVVESFVQKSVENGIDIIRIFDALNDV------------RNLETAVKATKKAGGHAQVA 142 (448)
T ss_pred ccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCeEEEE
Confidence 33444556777888899999999988876543 26888999999999988654
No 186
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=21.22 E-value=1.6e+02 Score=32.24 Aligned_cols=61 Identities=11% Similarity=0.073 Sum_probs=45.2
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccc----CCccCCc------CCeee--------eccchhHHHHHHHHHHcCcEEEee
Q 005690 12 WLQMWPDLIQKAKDGGLDVIQTYVF----WNGHEPT------QGNYY--------FQDRYDLVRFIKLVQQAGLYVHLR 72 (683)
Q Consensus 12 ~~~~W~d~l~k~ka~G~N~V~~yv~----Wn~hEp~------~G~~d--------F~G~~dl~~fl~~a~~~GL~Vilr 72 (683)
+.+..++.|+.|-..++|+...++- |.+.-+. .|.+. |=-..|+.++++-|++.|+.||--
T Consensus 16 ~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIPE 94 (329)
T cd06568 16 TVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVPE 94 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEEe
Confidence 6789999999999999999998874 5543221 22221 111359999999999999999854
No 187
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=20.96 E-value=61 Score=35.42 Aligned_cols=50 Identities=16% Similarity=0.283 Sum_probs=32.0
Q ss_pred HHHHHHHHHCCCCEEE-Ec--ccC-C-ccCCcCCeeeeccchhHHHHHHHHHHcCcEE
Q 005690 17 PDLIQKAKDGGLDVIQ-TY--VFW-N-GHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV 69 (683)
Q Consensus 17 ~d~l~k~ka~G~N~V~-~y--v~W-n-~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~V 69 (683)
++.|++||++|++.+. +. ++- . .+.-.|+...++ +..+.++.|++.||.|
T Consensus 141 ~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~---~~~~~i~~a~~~Gi~v 195 (343)
T TIGR03551 141 EEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTA---EWIEIIKTAHKLGIPT 195 (343)
T ss_pred HHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHH---HHHHHHHHHHHcCCcc
Confidence 7889999999999874 10 000 0 001123333333 5678999999999976
No 188
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=20.83 E-value=1.9e+02 Score=30.59 Aligned_cols=141 Identities=11% Similarity=0.044 Sum_probs=79.4
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHH-HcCcEEEeecCceeccccCCCCCCcc
Q 005690 11 IWLQMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQ-QAGLYVHLRIGPYVCAEWNYGGFPVW 89 (683)
Q Consensus 11 ~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~-~~GL~VilrpGPyi~aEw~~GG~P~W 89 (683)
-..+.=.+..+.+-++|++.|++.++-...+...|...|.....+.+..++.+ +.-+-+++|++-. -..+
T Consensus 17 f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---------~~~~ 87 (266)
T cd07944 17 FGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGND---------DIDL 87 (266)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCC---------CHHH
Confidence 35566678889999999999999998887666677777775555666666553 4455566777531 1112
Q ss_pred ccc--cCCe-EeecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccCCCccccCCCCcHHHHHHHHHHHhh
Q 005690 90 LKY--VPGI-EFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVG 166 (683)
Q Consensus 90 L~~--~p~~-~~Rt~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~ 166 (683)
+.. ..++ .+|...+. +.+++ ...+++.++++ |--+.+++|.=++ .+.+|+..+.+.+.+
T Consensus 88 l~~a~~~gv~~iri~~~~--~~~~~-~~~~i~~ak~~-------G~~v~~~~~~a~~--------~~~~~~~~~~~~~~~ 149 (266)
T cd07944 88 LEPASGSVVDMIRVAFHK--HEFDE-ALPLIKAIKEK-------GYEVFFNLMAISG--------YSDEELLELLELVNE 149 (266)
T ss_pred HHHHhcCCcCEEEEeccc--ccHHH-HHHHHHHHHHC-------CCeEEEEEEeecC--------CCHHHHHHHHHHHHh
Confidence 211 1111 13433221 12222 22333444422 4345677666443 245666666666677
Q ss_pred CCCCcceeeecCC
Q 005690 167 LNTGVPWVMCKQD 179 (683)
Q Consensus 167 ~g~~vp~~~~~~~ 179 (683)
.|.+. +..+|..
T Consensus 150 ~g~~~-i~l~DT~ 161 (266)
T cd07944 150 IKPDV-FYIVDSF 161 (266)
T ss_pred CCCCE-EEEecCC
Confidence 77664 4455543
No 189
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=20.80 E-value=1.3e+02 Score=26.04 Aligned_cols=47 Identities=19% Similarity=0.239 Sum_probs=25.9
Q ss_pred cCCceEecccccc-CCCccc----cCC-CCcHHHHHHHHHH---HhhCCCCcceee
Q 005690 129 QGGPIILSQIENE-FGPVEW----DIG-APGKAYAKWAAQM---AVGLNTGVPWVM 175 (683)
Q Consensus 129 ~gGpII~~QiENE-yg~~~~----~~~-~~~~~y~~~l~~~---~~~~g~~vp~~~ 175 (683)
+...|.+++|=|| -++... ..+ .....|.+||+++ +|+.+...|+..
T Consensus 7 ~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~ 62 (88)
T PF12876_consen 7 YDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTS 62 (88)
T ss_dssp -GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE-
T ss_pred CCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEe
Confidence 4468999999999 553221 011 1245666777665 567777888644
No 190
>PLN02540 methylenetetrahydrofolate reductase
Probab=20.71 E-value=2.1e+02 Score=33.75 Aligned_cols=89 Identities=17% Similarity=0.229 Sum_probs=59.4
Q ss_pred HHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcC--cEEEeecCceec-------cccCCCCCCcc
Q 005690 19 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAG--LYVHLRIGPYVC-------AEWNYGGFPVW 89 (683)
Q Consensus 19 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~G--L~VilrpGPyi~-------aEw~~GG~P~W 89 (683)
+|++-.++|.+.|-|=.| ||.+ .+.+|++.|++.| +.+|...-|-.. ++|..--+|.|
T Consensus 161 ~Lk~KvdAGAdFiITQlf----------FD~d---~f~~f~~~~r~~Gi~vPIipGImPI~S~k~l~r~~~l~Gi~IP~~ 227 (565)
T PLN02540 161 YLKEKVDAGADLIITQLF----------YDTD---IFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAE 227 (565)
T ss_pred HHHHHHHcCCCEEeeccc----------cCHH---HHHHHHHHHHhcCCCCCEEeeecccCCHHHHHHHHhccCCcCCHH
Confidence 333334589999998655 5655 7889999999998 666766666553 34655567888
Q ss_pred ccccCCeEeecCChhhHHHHHHHHHHHHHHHh
Q 005690 90 LKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMK 121 (683)
Q Consensus 90 L~~~p~~~~Rt~~~~y~~~~~~~~~~l~~~l~ 121 (683)
+.+.=+ ....++...++.--++...+++.|.
T Consensus 228 i~~rLe-~~kddde~v~~~Gieia~e~~~~L~ 258 (565)
T PLN02540 228 ITAALE-PIKDNDEAVKAYGIHLGTEMCKKIL 258 (565)
T ss_pred HHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 875211 1233445566666777778877777
No 191
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=20.63 E-value=3e+02 Score=25.81 Aligned_cols=57 Identities=18% Similarity=0.146 Sum_probs=41.2
Q ss_pred ceecccCCC--C-cccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEEee
Q 005690 3 SFYFSFFFI--W-LQMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 72 (683)
Q Consensus 3 e~~~~~~r~--~-~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~Vilr 72 (683)
++|.|-..+ . ...=++.++++++.|+.+|.+==. ........+.+.+++.|+.|++-
T Consensus 2 DlH~HT~~s~~dg~~~~~e~v~~A~~~Gl~~i~iTDH-------------~~~~~~~~~~~~~~~~~i~vi~G 61 (175)
T PF02811_consen 2 DLHVHTKYSILDGKDSPEEYVEQAKEKGLDAIAITDH-------------NNFAGYPDFYKEAKKKGIKVIPG 61 (175)
T ss_dssp EEEB--TTTSSTSSSSHHHHHHHHHHTTESEEEEEEE-------------TTTTTHHHHHHHHHHTTSEEEEE
T ss_pred CccccccCcchhhcCCHHHHHHHHHHcCCCEEEEcCC-------------cccccchHHHHHHHhcCCceEEe
Confidence 577777776 3 345688899999999999886433 12225788999999999998764
No 192
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=20.59 E-value=8.2e+02 Score=24.94 Aligned_cols=122 Identities=16% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCEEEEcccCCccCCcCCeeeec-cchhHHHHHHHHHHcCcEEEeecCceeccccCCC-CCCccccccC
Q 005690 17 PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ-DRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYG-GFPVWLKYVP 94 (683)
Q Consensus 17 ~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~-G~~dl~~fl~~a~~~GL~VilrpGPyi~aEw~~G-G~P~WL~~~p 94 (683)
++.++.|+++|++.+.+ -+.-.|+ |..-|.+.++.+++.|+ |++++--+.. ..|.-+.+..
T Consensus 63 ~~~~~~l~~~G~d~~~l----------aNNH~fD~G~~gl~~t~~~l~~a~i-------~~~g~~~~~~~~~~~~i~~~~ 125 (239)
T smart00854 63 PENAAALKAAGFDVVSL----------ANNHSLDYGEEGLLDTLAALDAAGI-------AHVGAGRNLAEARKPAIVEVK 125 (239)
T ss_pred HHHHHHHHHhCCCEEEe----------ccCcccccchHHHHHHHHHHHHCCC-------CEeeCCCChHHhhCcEEEEEC
Q ss_pred CeE----------------------eecCChhhHHHHHHHHHHHHHHHhhcccccccCCceEeccccccCCCccccCCCC
Q 005690 95 GIE----------------------FRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAP 152 (683)
Q Consensus 95 ~~~----------------------~Rt~~~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~ 152 (683)
+++ +...++...++++++++++-+. + .+ -|++.+.-.||...
T Consensus 126 g~kIg~ig~t~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~i~~lr~~-~--D~------vIv~~H~G~e~~~~------- 189 (239)
T smart00854 126 GIKIALLAYTYGTNNGWAASKDRPGVALLPDLDREKILADIARARKK-A--DV------VIVSLHWGVEYQYE------- 189 (239)
T ss_pred CEEEEEEEEEcCCCCCcccCCCCCCeeecCcCCHHHHHHHHHHHhcc-C--CE------EEEEecCccccCCC-------
Q ss_pred cHHHHHHHHHHHhhCCCCc
Q 005690 153 GKAYAKWAAQMAVGLNTGV 171 (683)
Q Consensus 153 ~~~y~~~l~~~~~~~g~~v 171 (683)
...+.+.+++.+.+.|+++
T Consensus 190 p~~~~~~~A~~l~~~G~Dv 208 (239)
T smart00854 190 PTDEQRELAHALIDAGADV 208 (239)
T ss_pred CCHHHHHHHHHHHHcCCCE
No 193
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=20.57 E-value=1.3e+02 Score=33.73 Aligned_cols=61 Identities=13% Similarity=0.188 Sum_probs=51.7
Q ss_pred cCCCCcccHHHHHHHHHHC-CCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEEee
Q 005690 8 FFFIWLQMWPDLIQKAKDG-GLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 72 (683)
Q Consensus 8 ~~r~~~~~W~d~l~k~ka~-G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~Vilr 72 (683)
|=..|...|+-+|.-+.++ -=||+..-|- |=+.|-=++|+-. .|.+.+++|+++|+-||..
T Consensus 177 ydlLPe~~weIDL~~veal~DENT~Aivvi-NP~NPcGnVys~~---HL~kiae~A~klgi~vIaD 238 (447)
T KOG0259|consen 177 YDLLPEKDWEIDLDGVEALADENTVAIVVI-NPNNPCGNVYSED---HLKKIAETAKKLGIMVIAD 238 (447)
T ss_pred ecccCcccceechHHHHHhhccCeeEEEEe-CCCCCCcccccHH---HHHHHHHHHHHhCCeEEeh
Confidence 4456789999999999996 8899988664 7777888888876 9999999999999999874
No 194
>cd02848 Chitinase_N_term Chitinase N-terminus domain. Chitinases hydrolyze the abundant natural biopolymer chitin, producing smaller chito-oligosaccharides. Chitin consists of multiple N-acetyl-D-glucosamine (NAG) residues connected via beta-1,4-glycosidic linkages and is an important structural element of fungal cell wall and arthropod exoskeletons. On the basis of the mode of chitin hydrolysis, chitinases are classified as random, endo-, and exo-chitinases and based on sequence criteria, chitinases belong to families 18 and 19 of glycosyl hydrolases. The N-terminus of chitinase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitob
Probab=20.25 E-value=4.1e+02 Score=24.44 Aligned_cols=47 Identities=17% Similarity=0.216 Sum_probs=28.7
Q ss_pred CcceEEEEEECCEEEEEEEcccCCCeeEEeeeeecCCCccEEEE-EEecCC
Q 005690 454 SAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISL-LSTSVG 503 (683)
Q Consensus 454 ~~~d~a~vfvng~~~G~~~~~~~~~~~~~~~~~~l~~g~~~L~I-Lven~G 503 (683)
+.+|.+.|++||+.+-+-.......+.+|.. -+.|.+.++| |+..-|
T Consensus 46 ~~Gd~a~vl~dg~~V~~G~~~~~~~~at~~v---~kgG~y~m~V~lCn~dG 93 (106)
T cd02848 46 DPGDTYKVLLDGKEVWSGALTGSSGTATFKV---GKGGRYQMQVALCNGDG 93 (106)
T ss_pred CCCcEEEEEECCeEEEcccCCCCccEEEEEe---CCCCeEEEEEEEECCCC
Confidence 5789999999998874432221222444442 1356777777 665555
No 195
>PRK07094 biotin synthase; Provisional
Probab=20.20 E-value=89 Score=33.60 Aligned_cols=50 Identities=14% Similarity=0.050 Sum_probs=33.1
Q ss_pred HHHHHHHHHCCCCEEEEccc---CCccCCcCCeeeeccchhHHHHHHHHHHcCcEE
Q 005690 17 PDLIQKAKDGGLDVIQTYVF---WNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV 69 (683)
Q Consensus 17 ~d~l~k~ka~G~N~V~~yv~---Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~V 69 (683)
++.+++||++|++.|...+- -..++..-...+++ +..+.++.+++.|+.|
T Consensus 129 ~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~---~~~~~i~~l~~~Gi~v 181 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFE---NRIACLKDLKELGYEV 181 (323)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHH---HHHHHHHHHHHcCCee
Confidence 57788999999998875431 11222111134444 7888899999999864
No 196
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=20.19 E-value=2e+02 Score=29.43 Aligned_cols=44 Identities=20% Similarity=0.158 Sum_probs=33.6
Q ss_pred HHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEEeec
Q 005690 20 IQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 73 (683)
Q Consensus 20 l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~Vilrp 73 (683)
..++|++|++.|-+ ++.|.+ |.-+ |+.+=++.|.++||.+|++.
T Consensus 74 ~~mLkd~G~~~vii----GHSERR---f~Et---di~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 74 AEMLKDIGAKGTLI----NHSERR---MKLA---DIEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHHcCCCEEEE----CcccCC---CCcc---HHHHHHHHHHHCCCEEEEEE
Confidence 35788889886655 455554 5444 68889999999999999987
No 197
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=20.12 E-value=2.4e+02 Score=29.85 Aligned_cols=46 Identities=26% Similarity=0.330 Sum_probs=38.2
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCccCCcCCeeeeccchhHHHHHHHHHHcCcEEEe
Q 005690 14 QMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 71 (683)
Q Consensus 14 ~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~dF~G~~dl~~fl~~a~~~GL~Vil 71 (683)
+.=++.+++..+.|+..|+++++.+- + ..+...++.|++.|+.|.+
T Consensus 91 ~~~~~di~~~~~~g~~~iri~~~~~~---------~---~~~~~~i~~ak~~G~~v~~ 136 (275)
T cd07937 91 DVVELFVEKAAKNGIDIFRIFDALND---------V---RNLEVAIKAVKKAGKHVEG 136 (275)
T ss_pred HHHHHHHHHHHHcCCCEEEEeecCCh---------H---HHHHHHHHHHHHCCCeEEE
Confidence 44678899999999999999887664 2 3788999999999998775
Done!