Your job contains 1 sequence.
>005694
MARTREALLLLLDVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELT
KEVGGYEHVKVLQDIKVVDGHLVQSLKHLPQGTCAGDYMLIKKYGETYKGKKHLCLITDA
LCPLKDPDVGTKEDQVSTIARQMVAFGLRMKNIVVRASLSGEPHMRVIIENDNLLNIFSK
KSSAKTLFVDSTTSLRGARKTRDISPVTIFRGDLELSEKMKIKVWVYKKTGEEKFPTLKK
YSDKAPSTDKFATHEVKVDYEYKSVEDPSKVVPPEQRIKGYRYGPQVVPISSAEWEAVKF
KPEKSVKLLGFTDASNILRHYYMKDVNLFIAEPGNSRATVAVSALARAMKEMNKVAIVRC
VWRQGQQSVVVGVLTPNVSEKINIPDSFYFNVLPFAEDVREFQFPSFSKFPVSWQPNEQQ
QEAADNLVKMLDLAPSGKGEILQPELTPNPALERFYHHLELKSEHQDAAPPPLDDSLKKI
TEPDPTLLAESQSAIDAFCGQFVIKENPKLKKSTRRFLREKPSGSDEPNGDGSVSDAQAV
NSMESKPVVTVDKIGDLTPIQDFEAMMSRRDCPDWVDKAIEDMKNKIFGLLENSNEGINY
PKAVELLVALRKGCILEQEPKQFNDVLEKVCKICRKRNFSTFFDFLMSKKLSLISKSEAV
DSDITDDEAGSFIVKSQPKHED
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 005694
(682 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2023757 - symbol:KU80 species:3702 "Arabidopsi... 2097 4.5e-217 1
UNIPROTKB|Q75IP6 - symbol:KU80 "ATP-dependent DNA helicas... 1947 3.5e-201 1
DICTYBASE|DDB_G0286303 - symbol:ku80 "DNA-dependent prote... 358 1.6e-62 3
UNIPROTKB|F1NZI1 - symbol:XRCC5 "Uncharacterized protein"... 399 1.1e-42 2
ZFIN|ZDB-GENE-041008-108 - symbol:xrcc5 "X-ray repair com... 355 4.8e-38 2
MGI|MGI:104517 - symbol:Xrcc5 "X-ray repair complementing... 371 7.7e-37 2
UNIPROTKB|J9NYU7 - symbol:XRCC5 "Uncharacterized protein"... 356 3.5e-36 2
UNIPROTKB|F1SS19 - symbol:XRCC5 "Uncharacterized protein"... 358 7.5e-36 2
UNIPROTKB|G3V817 - symbol:Xrcc5 "Protein Xrcc5" species:1... 362 1.4e-35 2
UNIPROTKB|F1PH55 - symbol:XRCC5 "Uncharacterized protein"... 356 8.9e-35 2
RGD|3976 - symbol:Xrcc5 "X-ray repair complementing defec... 364 8.2e-34 2
UNIPROTKB|P13010 - symbol:XRCC5 "X-ray repair cross-compl... 345 1.6e-33 2
UNIPROTKB|G5E5D1 - symbol:XRCC5 "Uncharacterized protein"... 313 8.2e-29 2
ASPGD|ASPL0000075053 - symbol:nkuB species:162425 "Emeric... 243 2.2e-20 2
POMBASE|SPBC543.03c - symbol:pku80 "Ku domain protein Pku... 214 9.1e-18 2
ASPGD|ASPL0000064203 - symbol:nkuA species:162425 "Emeric... 149 3.8e-09 2
POMBASE|SPCC126.02c - symbol:pku70 "Ku domain protein Pku... 134 2.9e-05 1
UNIPROTKB|F1NED5 - symbol:XRCC6 "X-ray repair cross-compl... 110 9.2e-05 2
ZFIN|ZDB-GENE-030131-6420 - symbol:xrcc6 "X-ray repair co... 104 9.3e-05 2
FB|FBgn0041627 - symbol:Ku80 "Ku80" species:7227 "Drosoph... 120 0.00011 2
UNIPROTKB|F1NII5 - symbol:XRCC6 "X-ray repair cross-compl... 109 0.00012 2
UNIPROTKB|F1MMD5 - symbol:XRCC6 "Uncharacterized protein"... 126 0.00022 1
UNIPROTKB|O93257 - symbol:XRCC6 "X-ray repair cross-compl... 110 0.00049 2
UNIPROTKB|F1SRE0 - symbol:XRCC6 "Uncharacterized protein"... 110 0.00089 2
>TAIR|locus:2023757 [details] [associations]
symbol:KU80 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IEA;TAS] [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0015074 "DNA integration"
evidence=TAS] [GO:0000723 "telomere maintenance" evidence=TAS]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0006281
"DNA repair" evidence=TAS] [GO:0009408 "response to heat"
evidence=IEP] [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0006342 "chromatin silencing" evidence=RCA]
[GO:0016572 "histone phosphorylation" evidence=RCA] [GO:0051567
"histone H3-K9 methylation" evidence=RCA] InterPro:IPR005160
InterPro:IPR006164 InterPro:IPR014893 InterPro:IPR024193
Pfam:PF02735 Pfam:PF03730 Pfam:PF08785 PIRSF:PIRSF016570
SMART:SM00559 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524
GO:GO:0005737 GO:GO:0009408 GO:GO:0006310 GO:GO:0003690
GO:GO:0004003 GO:GO:0000723 GO:GO:0005958 GO:GO:0006303
GO:GO:0015074 EMBL:AC023673 EMBL:AC051631 Gene3D:1.10.1600.10
Gene3D:2.40.290.10 InterPro:IPR005161 InterPro:IPR016194
Pfam:PF03731 SUPFAM:SSF100939 EMBL:AF283758 IPI:IPI00517555
PIR:G96520 RefSeq:NP_564520.1 UniGene:At.42965
ProteinModelPortal:Q9FQ09 SMR:Q9FQ09 IntAct:Q9FQ09
MINT:MINT-1212609 STRING:Q9FQ09 PaxDb:Q9FQ09 PRIDE:Q9FQ09
EnsemblPlants:AT1G48050.1 GeneID:841223 KEGG:ath:AT1G48050
TAIR:At1g48050 eggNOG:NOG299744 HOGENOM:HOG000006137
InParanoid:Q9FQ09 KO:K10885 OMA:HRALHPQ PhylomeDB:Q9FQ09
ProtClustDB:CLSN2688540 Genevestigator:Q9FQ09 Gene3D:1.25.40.240
PANTHER:PTHR12604:SF3 SUPFAM:SSF101420 Uniprot:Q9FQ09
Length = 680
Score = 2097 (743.2 bits), Expect = 4.5e-217, P = 4.5e-217
Identities = 409/687 (59%), Positives = 519/687 (75%)
Query: 1 MARTREALLLLLDVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELT 60
MAR RE L+L+LDV P+M SVLPDVEK CS L+QKKLIY K EVG+++FGTEET NEL
Sbjct: 1 MARNREGLVLVLDVGPAMRSVLPDVEKACSMLLQKKLIYNKYDEVGIVVFGTEETGNELA 60
Query: 61 KEVGGYEHVKVLQDIKVVDGHLVQSLKHLPQGTCAGDY---------MLIKKYGETYKGK 111
+E+GGYE+V VL++I+VVD + +K LP+GT AGD+ MLIK YG +KGK
Sbjct: 61 REIGGYENVTVLRNIRVVDELAAEHVKQLPRGTVAGDFLDALIVGMDMLIKMYGNAHKGK 120
Query: 112 KHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKNIVVRASLSGEPHMRVIIEN 171
K +CLIT+A CP KDP GTK+DQVSTIA +M A G++M++IV+R++LSG+ H RVI EN
Sbjct: 121 KRMCLITNAACPTKDPFEGTKDDQVSTIAMKMAAEGIKMESIVMRSNLSGDAHERVIEEN 180
Query: 172 DNLLNIFSKKSSAKTLFVDSTTSLRGARKTRDISPVTIFRGDLELSEKMKIKVWVYKKTG 231
D+LL +FS + AKT+ VDS SL G+ KTR ++PVT+FRGDLE++ MKIKVWVYKK
Sbjct: 181 DHLLTLFSSNAIAKTVNVDSPLSLLGSLKTRRVAPVTLFRGDLEINPTMKIKVWVYKKVA 240
Query: 232 EEKFPTLKKYSDKAPSTDKFATHEVKVDYEYKSVEDPSKVVPPEQRIKGYRYGPQVVPIS 291
EE+ PTLK YSDKAP TDKFA HEVKVDY+YK + ++V+ PE+RIKG+RYGPQV+PIS
Sbjct: 241 EERLPTLKMYSDKAPPTDKFAKHEVKVDYDYKVTAESTEVIAPEERIKGFRYGPQVIPIS 300
Query: 292 SAEWEAVKFKPEKSVKLLGFTDASNILRHYYMKDVNLFIAEPGNSRATVAVSALARAMKE 351
+ E +KFK +K +KLLGFT+ASNILRHYYMKDVN+ + +P ++ +AVSA+AR MKE
Sbjct: 301 PDQIETLKFKTDKGMKLLGFTEASNILRHYYMKDVNIVVPDPSKEKSVLAVSAIAREMKE 360
Query: 352 MNKVAIVRCVWRQGQQSVVVGVLTPNVSEKINIPDSFYFNVLPFAEDVREFQFPSFSKFP 411
NKVAIVRCVWR GQ +VVVGVLTPNVSE+ + PDSFYFNVLPFAEDVREF FPSF+K P
Sbjct: 361 TNKVAIVRCVWRNGQGNVVVGVLTPNVSERDDTPDSFYFNVLPFAEDVREFPFPSFNKLP 420
Query: 412 VSWQPNEQQQEAADNLVKMLDLAPSGKGEILQPELTPNPALERFYHHLELKSEHQDAAPP 471
SW+P+EQQQ ADNLVKMLDLAPS + E+L+P+LTPNP L+RFY +LELKS+ DA P
Sbjct: 421 SSWKPDEQQQAVADNLVKMLDLAPSAEEEVLKPDLTPNPVLQRFYEYLELKSKSTDATLP 480
Query: 472 PLDDSLKKITEPDPTLLAESQSAIDAFCGQFVIKENPKLKKSTRRFLREKPSGSDEPNGD 531
P+D + K++ E DP L + ++S +D F G F +KENPKLKK+++R LR+KPSGSD+ +
Sbjct: 481 PMDGTFKRLMEQDPELSSNNKSIMDTFRGSFEVKENPKLKKASKRLLRDKPSGSDDEDNR 540
Query: 532 GSVSDAQAVNSMESKPVVTVDKIGDLTPIQDFEAMMSRRDCPDWVDKAIEDMKNKIFGLL 591
DA+ E+K +D +GD PIQDFEAM+SRRD DW +KAI MKN I L+
Sbjct: 541 MITYDAK-----ENK----IDIVGDANPIQDFEAMISRRDKTDWTEKAITQMKNLIMKLV 591
Query: 592 EN-SNEGINYPKAVELLVALRKGCILEQEPKQFNDVLEKVCKICRKRNFSTFFDFXXXXX 650
EN ++EG KA+E ++ALRKGC+LEQEPKQFN+ L + K+C++RN S +
Sbjct: 592 ENCTDEG---DKALECVLALRKGCVLEQEPKQFNEFLNHLFKLCQERNLSHLLEHFMSKK 648
Query: 651 XXXXXXXEAVDSDITDDEAGSFIVKSQ 677
EA DSDI D+ AG FIVK +
Sbjct: 649 ITLIPKSEAADSDIVDENAGDFIVKQE 675
>UNIPROTKB|Q75IP6 [details] [associations]
symbol:KU80 "ATP-dependent DNA helicase 2 subunit KU80"
species:39947 "Oryza sativa Japonica Group" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR002035 InterPro:IPR005160
InterPro:IPR006164 InterPro:IPR014893 InterPro:IPR024193
Pfam:PF02735 Pfam:PF03730 Pfam:PF08785 PIRSF:PIRSF016570
SMART:SM00327 SMART:SM00559 GO:GO:0005524 EMBL:DP000009
EMBL:AP008209 GO:GO:0009408 GO:GO:0006310 GO:GO:0003690
GO:GO:0004003 GO:GO:0005958 GO:GO:0006303 EMBL:CM000140
Gene3D:1.10.1600.10 Gene3D:2.40.290.10 InterPro:IPR005161
InterPro:IPR016194 Pfam:PF03731 SUPFAM:SSF100939 eggNOG:NOG299744
HOGENOM:HOG000006137 Gene3D:1.25.40.240 PANTHER:PTHR12604:SF3
SUPFAM:SSF101420 OMA:GYEYGRT EMBL:AC128647 RefSeq:NP_001173721.1
UniGene:Os.57982 ProteinModelPortal:Q75IP6
EnsemblPlants:LOC_Os03g63920.1 GeneID:9267125
KEGG:dosa:Os03t0856200-04 KEGG:osa:9267125 Gramene:Q75IP6
Uniprot:Q75IP6
Length = 688
Score = 1947 (690.4 bits), Expect = 3.5e-201, P = 3.5e-201
Identities = 393/692 (56%), Positives = 490/692 (70%)
Query: 1 MARTREALLLLLDVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELT 60
MAR +EAL+LLLDV PSMH VL +VE +CS L+ KKL+Y ++ E+GV+LFGT+ET NEL
Sbjct: 1 MARNKEALVLLLDVGPSMHGVLQEVENICSTLVHKKLVYNRSDEIGVVLFGTKETSNELA 60
Query: 61 KEVGGYEHVKVLQDIKVVDGHLVQSLKHLPQGTCAGDY---------MLIKKYGETYKGK 111
KE+GGY+HV V +DIKVVD +L++LP+GT GD+ MLI+K+G KGK
Sbjct: 61 KELGGYKHVVVARDIKVVDEETTNALQNLPRGTSPGDFLDAIVVGLDMLIRKFGNI-KGK 119
Query: 112 KHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKNIVVRASLSGEPHMRVIIEN 171
+ +CL+TDA PL+DP GTK+DQV TIA QM ++M I+ R S G H V+ EN
Sbjct: 120 QRMCLVTDAQHPLRDPPQGTKKDQVDTIADQMKRHEIKMDCIIFRES--GVRHNAVMDEN 177
Query: 172 DNLLNIFSKKSSAKTLFVDSTTSLRGARKTRDISPVTIFRGDLELSEKMKIKVWVYKKTG 231
D LL F ++S K + VDS TSL GA +TR++ PVT+FRGDLE+S KIKVWVYKKT
Sbjct: 178 DQLLYHFRERSVTKVVHVDSPTSLLGALRTRNVLPVTVFRGDLEVSSSFKIKVWVYKKTS 237
Query: 232 EEKFPTLKKYSDKAPSTDKFATHEVKVDYEYKSVEDPSKVVPPEQRIKGYRYGPQVVPIS 291
EEKFPTLKKYSDKAP++DKFA+HEVKVDYEYKSV +P VVPP+QRIKGY YGPQVVPIS
Sbjct: 238 EEKFPTLKKYSDKAPASDKFASHEVKVDYEYKSVLEPDTVVPPDQRIKGYLYGPQVVPIS 297
Query: 292 SAEWEAVKFKPEKSVKLLGFTDASNILRHYYMKDVNLFIAEPGNSRATVAVSALARAMKE 351
SAEWEAVKFKPEK VKLLGFTD S+I RHY+MKDV F+ EPGN++A AVSALARAM E
Sbjct: 298 SAEWEAVKFKPEKGVKLLGFTDRSSISRHYFMKDVFSFVPEPGNTKAVAAVSALARAMSE 357
Query: 352 MNKVAIVRCVWRQGQQSVVVGVLTPNVSEKINIPDSFYFNVLPFAEDVREFQFPSFSKFP 411
MNKVAI+RCVWRQGQ +V +GVLTPN+S N+ DSFYFN+LPFAED+REFQF SFS P
Sbjct: 358 MNKVAILRCVWRQGQGNVALGVLTPNISSAKNVLDSFYFNILPFAEDIREFQFRSFSSLP 417
Query: 412 VSWQPNEQQQEAADNLVKMLDLAPSGKGEILQPELTPNPALERFYHHLELKSEHQDAAPP 471
S QP ++QQEAADNLVKMLDLAP G+ EIL+P+ TPNP LERFY +L+LKS+ DA P
Sbjct: 418 SSSQPTKEQQEAADNLVKMLDLAPPGREEILKPDFTPNPMLERFYRYLDLKSKQPDANVP 477
Query: 472 PLDDSLKKITEPDPTLLAESQSAIDAFCGQFVIKENPKLKKSTRRFLREKPSGSDEPNGD 531
PLD LKKITEPDP ++ I F +KENPK KK R R +G+D+
Sbjct: 478 PLDKCLKKITEPDPDVIDYQAPLIKKLGNVFELKENPK-KKKARTQDRLTYTGADDQAKL 536
Query: 532 GSVSDAQAVNSMES--KPVVTVDKIGDLTPIQDFEAMMSRRDCPDWVDKAIEDMKNKIFG 589
A+ V E+ P +IGD P+QDFEAM+++R WV AIE+M+ I
Sbjct: 537 LEEPSAEKVGVSEALYPPKKKAGEIGDHNPVQDFEAMLTQRSSSTWVQTAIEEMQKYITA 596
Query: 590 LLENSNEGINYPKAVELLVALRKGCILEQEPKQFNDVLEKVCKICRKRNFSTFFDFXXXX 649
L+++S + N+ KA+E LVALRK CI+EQEP ++N + K+C+ R F
Sbjct: 597 LIQDSCDRDNHQKALECLVALRKACIIEQEPNEYNGFVTKLCQKFRPAGDKIFLQLLSSK 656
Query: 650 XXXXXXXXEAVDSDITDDEAGSFIVKSQPKHE 681
EA DSD+T++ A +F +K +P +
Sbjct: 657 KASLISKEEAPDSDVTEEMARNFCLKPEPSSQ 688
>DICTYBASE|DDB_G0286303 [details] [associations]
symbol:ku80 "DNA-dependent protein kinase (DNAPK)
subunit" species:44689 "Dictyostelium discoideum" [GO:0030587
"sorocarp development" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA;IMP] [GO:0005958 "DNA-dependent
protein kinase-DNA ligase 4 complex" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=IEA;ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA;ISS] [GO:0003690 "double-stranded DNA binding"
evidence=ISS] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IEA;ISS] [GO:0043564 "Ku70:Ku80
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000723
"telomere maintenance" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR002035 InterPro:IPR005160
InterPro:IPR006164 InterPro:IPR014893 InterPro:IPR024193
Pfam:PF02735 Pfam:PF03730 Pfam:PF08785 SMART:SM00327
dictyBase:DDB_G0286303 GO:GO:0005524 GenomeReviews:CM000153_GR
GO:GO:0030587 GO:GO:0006310 GO:GO:0003690 EMBL:AAFI02000085
GO:GO:0004003 GO:GO:0005958 GO:GO:0006303 Gene3D:1.10.1600.10
Gene3D:2.40.290.10 InterPro:IPR005161 InterPro:IPR016194
Pfam:PF03731 SUPFAM:SSF100939 eggNOG:NOG299744 KO:K10885
OMA:HRALHPQ Gene3D:1.25.40.240 PANTHER:PTHR12604:SF3
SUPFAM:SSF101420 HSSP:P13010 RefSeq:XP_637846.1
ProteinModelPortal:Q54LY5 STRING:Q54LY5 PRIDE:Q54LY5
EnsemblProtists:DDB0232002 GeneID:8625560 KEGG:ddi:DDB_G0286303
InParanoid:Q54LY5 ProtClustDB:CLSZ2430125 Uniprot:Q54LY5
Length = 796
Score = 358 (131.1 bits), Expect = 1.6e-62, Sum P(3) = 1.6e-62
Identities = 83/272 (30%), Positives = 148/272 (54%)
Query: 253 THEVKVDYEYKSVEDPSKVVPPEQRIKGYRYGPQVVPISSAEWEAVKFKPEKSVKLLGFT 312
T +V + Y S+ DP + +KGY+YG ++P S + + +K+ K +K++GFT
Sbjct: 302 TLDVNQEVSYYSITDPDNEILKPDLLKGYKYGKSLIPFSKIDEDQLKYSSSKCLKVVGFT 361
Query: 313 DASNILRHYYMKDVNLFIAEPGNSRATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVG 372
D +I +Y M + +F+++PG+ ++ A+S+ A+ E ++V +VR V + S +G
Sbjct: 362 DRKSIPIYYNMGNTEVFVSQPGDKQSEEALSSFIHALVETDQVMVVRYV-KTMNGSPYLG 420
Query: 373 VLTPNV-SEKINIPDSFYFNVLPFAEDVREFQFPSFS-KFPVSWQ---PNEQQQEAADNL 427
+ P+V S+ + + Y+N LP A+D+R++QFP S K P++ + PN +Q EA L
Sbjct: 421 YMIPHVKSDYVCL----YYNHLPLADDIRQYQFPPISPKNPLTRKSNIPNAEQLEATQQL 476
Query: 428 VKMLDLAPSGKGE------ILQPELTPNPALERFYHHLELKSEHQDAAPPPLDDSLKKIT 481
+ +DL S E +L+P T NP L+ FY L +S H + P LD + +
Sbjct: 477 IDSMDLMKSEFDEDGDPIQMLKPRFTYNPLLQHFYQCLHHRSLHPNTQIPKLDPIIAEYI 536
Query: 482 EPDPTLLAESQSAIDAFCGQFVIKENPKLKKS 513
PD ++ +S+ +I F +F + + K+
Sbjct: 537 NPDQIIMNKSKQSIKNFADKFPLTKTTVFSKT 568
Score = 234 (87.4 bits), Expect = 1.6e-62, Sum P(3) = 1.6e-62
Identities = 72/267 (26%), Positives = 129/267 (48%)
Query: 13 DVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVL 72
D + + S + D + + L Q+KLIYGK ++G++L GT+ T+N L + GY+H+ V+
Sbjct: 27 DGTTTTTSSIEDALRSVTLLYQQKLIYGKKDQLGLVLIGTKGTKNNLQDD--GYQHITVV 84
Query: 73 QDIKVVDGHLVQSLKHLPQGTCAGDY---------MLIKKYGETYKGKKHLCLITDALCP 123
DI+ ++ L++L G GD MLI+K E K +K + L+T+A P
Sbjct: 85 SDIEEPSIETLKYLENLAPGESKGDVIDSLIVAMDMLIRKT-ENKKYQKRIFLVTNARDP 143
Query: 124 LKDPDVGTKEDQVSTIARQMVAFGLRMKNIVVRASL--SGEPHMRVIIE-NDNLLNIFSK 180
+ D+ DQ I ++ G+ + ++ S + + E N+ L F++
Sbjct: 144 INTEDLSIVRDQFKKIDVKLNIIGVDFLEEIEENNMDTSNNNKNKSLKEKNEIFLREFAE 203
Query: 181 KSSAKTLFVDSTTSLRGARKTRDISPVTIFRGDLELSEKMKIKVWVYKKTGEEKFPTLKK 240
+ V + +++ + T FRG LE++ ++KI VW Y K ++ P+LKK
Sbjct: 204 SVDGVLVPVKQALEMMSFFRSQSVMTRTSFRGALEITPELKIPVWGYLKMKQQLLPSLKK 263
Query: 241 YSDKAPSTDKFATHEVKVDYEYKSVED 267
S A + + + + K+ ED
Sbjct: 264 ISSIAQQQIEQQQQQQQQQNKNKNNED 290
Score = 168 (64.2 bits), Expect = 1.6e-62, Sum P(3) = 1.6e-62
Identities = 47/146 (32%), Positives = 75/146 (51%)
Query: 531 DGSVSDAQAVNSMES---KPVVT--VDKIGDLTPIQDFEAMMSRRDCPDWVDKAIEDMKN 585
DGS + + VN +V+ V ++G + P+Q+F+ M++RRD D VDKAI MK
Sbjct: 614 DGSEAKKRKVNDFSEFSLDKLVSGYVTEVGTINPVQNFKDMLNRRDM-DLVDKAITLMKE 672
Query: 586 KIFGLLENSNEGINYPKAVELLVALRKGCILEQEPKQFNDVLEKVCKICRKRNFSTFFDF 645
+I L+ +S Y KA E + LR GCI E E +QFN L+ + + + + F+ +
Sbjct: 673 RILQLVNDSLRDQYYQKAFECIKELRVGCIRESEAEQFNGFLKDMRSLFQSKKRDDFWQY 732
Query: 646 XXXXXXXXXXXXEAVDSDITDDEAGS 671
++++ IT DE S
Sbjct: 733 ITADVTSILGE-KSINL-ITQDECDS 756
Score = 59 (25.8 bits), Expect = 7.0e-10, Sum P(2) = 7.0e-10
Identities = 20/109 (18%), Positives = 48/109 (44%)
Query: 325 DVNLFIAEPGNSRATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPNVSEKINI 384
D+ L + + T S++ A++ + + + ++ G++ + VL K N+
Sbjct: 16 DIGLGMTSKDSDGTTTTTSSIEDALRSVTLLYQQKLIY--GKKDQLGLVLIGTKGTKNNL 73
Query: 385 PDSFYFNVLPFAEDVREFQFPSFSKFPVSWQPNEQQQEAADNLVKMLDL 433
D Y ++ D+ E + K+ + P E + + D+L+ +D+
Sbjct: 74 QDDGYQHIT-VVSDIEEPSIETL-KYLENLAPGESKGDVIDSLIVAMDM 120
>UNIPROTKB|F1NZI1 [details] [associations]
symbol:XRCC5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0000784 "nuclear chromosome, telomeric region" evidence=IEA]
[GO:0003691 "double-stranded telomeric DNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0008022 "protein
C-terminus binding" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA] [GO:0031625 "ubiquitin protein ligase binding"
evidence=IEA] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA] [GO:0043564 "Ku70:Ku80 complex"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0050769 "positive
regulation of neurogenesis" evidence=IEA] [GO:0051575
"5'-deoxyribose-5-phosphate lyase activity" evidence=IEA]
[GO:0060218 "hematopoietic stem cell differentiation" evidence=IEA]
[GO:0070419 "nonhomologous end joining complex" evidence=IEA]
InterPro:IPR002035 InterPro:IPR005160 InterPro:IPR006164
InterPro:IPR014893 InterPro:IPR024193 Pfam:PF02735 Pfam:PF03730
Pfam:PF08785 PIRSF:PIRSF016570 PROSITE:PS50234 SMART:SM00327
SMART:SM00559 GO:GO:0005737 GO:GO:0045892 GO:GO:0043066
GO:GO:0008283 GO:GO:0044212 GO:GO:0006310 GO:GO:0004003
GO:GO:0000784 GO:GO:0005958 GO:GO:0006303 GO:GO:0051575
Gene3D:1.10.1600.10 Gene3D:2.40.290.10 InterPro:IPR005161
InterPro:IPR016194 Pfam:PF03731 SUPFAM:SSF100939 GO:GO:0043564
OMA:HRALHPQ Gene3D:1.25.40.240 PANTHER:PTHR12604:SF3
SUPFAM:SSF101420 GO:GO:0003691 GeneTree:ENSGT00390000015674
EMBL:AADN02016815 EMBL:AADN02016818 EMBL:AADN02016816
EMBL:AADN02016817 IPI:IPI00576931 Ensembl:ENSGALT00000018729
Uniprot:F1NZI1
Length = 729
Score = 399 (145.5 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
Identities = 127/479 (26%), Positives = 221/479 (46%)
Query: 214 LELSEKMKIKVWVYKKTGEEKFPTLKKYSDKAPSTDKFATHEVKVDYEYKSVEDPSKVVP 273
L + + I++ YK EEK D A + K +V+ + Y +D V
Sbjct: 249 LTIGSNLSIRIVAYKALTEEKVKKTWTVVD-AKTLRK---EDVQRETVYCLNDDDETEVQ 304
Query: 274 PEQRIKGYRYGPQVVPISSAEWEAVKFKPE-KSVKLLGFTDASNILRHYYMKDVNLFI-A 331
+ I+G+RYG +VP S + E +K+K E K +LGF+ +S I RH YM + L + A
Sbjct: 305 KDDTIQGFRYGSDIVPFSKEDEEQMKYKTEAKCFSVLGFSRSSQIQRHCYMGNQVLKVFA 364
Query: 332 EPGNSRATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPNVSEKINIPDSFYFN 391
+ A VA SAL +A+ E+N VAIVR + + + + +GV P + + FY
Sbjct: 365 AKDDENAAVAFSALVQALDELNVVAIVRYAYDR-RCNPQIGVAFPCIKDTYEC--LFYVQ 421
Query: 392 VLPFAEDVREFQFPSFSKFPVSWQPNEQQQEAADNLVKMLDLA-PSGKGE----ILQPEL 446
LP+ EDVR++ F S K P Q A D+L+ ++L GE + +P
Sbjct: 422 -LPYMEDVRQYMFSSL-KNNKKCTPTADQLSAIDSLIDSMNLVYEDHNGETFEDLFKPSK 479
Query: 447 TPNPALERFYHHLELKSEHQDAAPPPLDDSLKKITEPDPTLLAESQSAIDAFCGQFVIKE 506
PNP +R Y L+ K+ H + PP++ L ++ E + ++ ++ F +K+
Sbjct: 480 IPNPHFQRLYQCLQHKAFHPNEPLPPIEQHLLEMLEVPCVVKERCKAPLEKVKALFPLKD 539
Query: 507 NPKLK--KSTRRFLREKPSGSDEPNGDG-SVSDAQAVNSMESKPVVTVDKIGDLTPIQDF 563
K K K+ + ++ G PN + D + S+ V +G + P +DF
Sbjct: 540 AGKKKEEKTAQDIFKDDEDG---PNAKRRKIEDEEDSFSIMKLAEGNVTSVGSVNPAEDF 596
Query: 564 EAMMSRRDCPDWVDKAIEDMKNKIFGLLENSNEGINYPKAVELLVALRKGCILEQEPKQF 623
+ ++ +++ D+ D + + + N+I LEN + Y K + + R I + + F
Sbjct: 597 QILVRQKNA-DFKDVS-QQLINRIDQFLENRSSQY-YMKGINCIRVFRGEAIKLSKVQCF 653
Query: 624 NDVLEKVCKICRKRNFSTFFDFXXXXXXXXXXXXEAVDSDITDDEAGSFIVKSQPKHED 682
ND L+ + + + F++ EA S +T +EA F+ + K+E+
Sbjct: 654 NDFLQALKSKVEDKALADFWEIVVQDRISLITKDEAEGSSVTSEEAEKFLTPKEKKNEN 712
Score = 123 (48.4 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
Identities = 43/165 (26%), Positives = 84/165 (50%)
Query: 5 REALLLLLDVSPSMHSVLPDVE-------KLCSRLIQKKLIYGKNHEVGVILFGTEETEN 57
+ A++L LDV +M S P E K+ ++ +Q+++ EV V+LFGT+ T+N
Sbjct: 6 KSAIVLCLDVGITMSSSAPGEESSLEQAKKVVTKFLQRQVFAESKDEVAVVLFGTDGTKN 65
Query: 58 ELTKEVGGYEHVKVLQDIKVVDGHLVQSLKHLPQ-GTCAGDYM--------LIKK--YGE 106
EL Y+++ V + + + D L++ +++ Q G+ D++ L++K G+
Sbjct: 66 ELASR-DQYQNITVHRSLMLPDFDLLEDIQNRIQLGSQQADFLDAIIVCMDLLQKETLGK 124
Query: 107 TYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMK 151
++ K+H+ L TD P+ EDQ+ I + G+ ++
Sbjct: 125 KFE-KRHIELFTDLSSPVS-------EDQLEIIIANLKKTGISLQ 161
>ZFIN|ZDB-GENE-041008-108 [details] [associations]
symbol:xrcc5 "X-ray repair complementing defective
repair in Chinese hamster cells 5" species:7955 "Danio rerio"
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IEA] [GO:0000723 "telomere
maintenance" evidence=IEA] [GO:0043564 "Ku70:Ku80 complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IMP] [GO:0010212 "response to ionizing
radiation" evidence=IMP] [GO:0005622 "intracellular" evidence=IGI]
[GO:0042771 "intrinsic apoptotic signaling pathway in response to
DNA damage by p53 class mediator" evidence=IGI] InterPro:IPR002035
InterPro:IPR005160 InterPro:IPR006164 InterPro:IPR014893
InterPro:IPR024193 Pfam:PF02735 Pfam:PF03730 Pfam:PF08785
PIRSF:PIRSF016570 PROSITE:PS50234 SMART:SM00327 SMART:SM00559
ZFIN:ZDB-GENE-041008-108 GO:GO:0043066 GO:GO:0042771 GO:GO:0003677
GO:GO:0010212 GO:GO:0006310 GO:GO:0004003 GO:GO:0005958
GO:GO:0006303 Gene3D:1.10.1600.10 Gene3D:2.40.290.10
InterPro:IPR005161 InterPro:IPR016194 Pfam:PF03731 SUPFAM:SSF100939
eggNOG:NOG299744 KO:K10885 Gene3D:1.25.40.240 PANTHER:PTHR12604:SF3
SUPFAM:SSF101420 CTD:7520 HOVERGEN:HBG006237 OrthoDB:EOG4NZTSV
EMBL:AY877316 IPI:IPI01016737 RefSeq:NP_001017360.1
UniGene:Dr.76405 ProteinModelPortal:Q5FY48 STRING:Q5FY48
GeneID:449848 KEGG:dre:449848 HOGENOM:HOG000068137 NextBio:20832910
Uniprot:Q5FY48
Length = 727
Score = 355 (130.0 bits), Expect = 4.8e-38, Sum P(2) = 4.8e-38
Identities = 124/476 (26%), Positives = 207/476 (43%)
Query: 214 LELSEKMKIKVWVYKKTGEEKFPTLKKYSDKAPSTDKFATHEVKVDYEYKSVEDPSKVVP 273
L + + I++ YK EEK +KK S +VK + Y +D V
Sbjct: 248 LTIGSSLSIRIVGYKAVTEEK---VKK-SWTIVDAQSHQRDDVKRETVYCLNDDDETEVQ 303
Query: 274 PEQRIKGYRYGPQVVPISSAEWEAVKFKPE-KSVKLLGFTDASNILRHYYMKD--VNLFI 330
+ I+GYRYG +VP S + E +K+K + K +LGFT I RH +M V +F
Sbjct: 304 KDDTIQGYRYGSDIVPFSKVDEEQMKYKHDGKCFSVLGFTKQELIPRHQFMGSQVVKVF- 362
Query: 331 AEPGNSRATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPNVSEKINIPDSFYF 390
A + A VA+S+L R + + AIVR + + + + VG P + +K + +
Sbjct: 363 APRDDEHAAVALSSLIRTLDGLKMAAIVRYAYDR-RSNPQVGAAFPCIKKKY---ECLLY 418
Query: 391 NVLPFAEDVREFQFPSFSKFPVSWQPNEQQQEAADNLV-KMLDLAPSGKGE---ILQPEL 446
LP+ ED+R+F FP + P+ Q A D L+ M+ + GE I +
Sbjct: 419 VQLPYMEDLRQFTFPMLENNK-KFMPSGSQLSAVDALIDSMMLMEKDENGESVDIFKVNH 477
Query: 447 TPNPALERFYHHLELKSEHQDAAPPPLDDSLKKITEPDPTLLAESQSAIDAFCGQFVIKE 506
PNP +R + L + + D PP+D LK++ E + A + + F +K
Sbjct: 478 IPNPQFQRLFQCLHHRGVNPDDPLPPVDPWLKRVLERPQAVSARCHAPLRDVKTSFPLKV 537
Query: 507 NPKLKKSTRRFLREKPSGSDEPNGDG-SVSDAQAVNSMESKPVVTVDKIGDLTPIQDFEA 565
K KK + S +DEP+ V++ N E + +G + P +DF
Sbjct: 538 VVK-KKEQKTSADVFGSSADEPDAKKVKVNEETEFNLAEITEG-NITSVGSVNPARDFCT 595
Query: 566 MMSRRDCPDWVDKAIEDMKNKIFGLLENSNEGINYPKAVELLVALRKGCILEQEPKQFND 625
++ ++ D+A + + ++I LL N + Y K++ + A R +L + FN
Sbjct: 596 LIRQKTVS--FDQACQQLTHRIEQLLGNRSTEY-YTKSIACIQAFRDQSVLSGSAELFNS 652
Query: 626 VLEKVCKICRKRNFSTFFDFXXXXXXXXXXXXEAVDSDITDDEAGSFIVKSQPKHE 681
L+ + + R+ F++ E S I+ EA F+ Q K E
Sbjct: 653 YLQSLKRSVADRSLQDFWNLLAQDGVTLISKDEVEASTISKQEANQFLSFEQ-KQE 707
Score = 128 (50.1 bits), Expect = 4.8e-38, Sum P(2) = 4.8e-38
Identities = 50/166 (30%), Positives = 89/166 (53%)
Query: 1 MART-REALLLLLDVSPSMHSVLPDVE---KLCSRLIQK---KLIYGKNH-EVGVILFGT 52
MAR + AL+L +DV S+ + P E + ++IQK + ++ +N E+G++LFGT
Sbjct: 1 MARAAKSALVLCMDVGFSISNSGPGQEPPFEQAKKVIQKFVQRQVFAENKDEIGLVLFGT 60
Query: 53 EETENELTKEVGGYEHVKVLQDIKVVDGHLVQSL-KHLPQGTCAGDYM--LIK----KYG 105
+ T+N L + G YE++ V + + + D L++ + + L G D++ L+
Sbjct: 61 DGTKNPLAND-GQYENITVHRHLMMPDFELLEEIERELQPGGQQADWLDALVVCMDLLQN 119
Query: 106 ETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMK 151
ET GKK+ L AL L D ++ T EDQ+ I + + G+ ++
Sbjct: 120 ETM-GKKYDRL-NIAL--LTDLNIQTSEDQLDIIIQNLKKAGITLQ 161
>MGI|MGI:104517 [details] [associations]
symbol:Xrcc5 "X-ray repair complementing defective repair in
Chinese hamster cells 5" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000723 "telomere
maintenance" evidence=IEA] [GO:0000784 "nuclear chromosome,
telomeric region" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=ISO] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005694
"chromosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IGI;IMP]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=ISO] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=IMP]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0031625 "ubiquitin protein ligase binding" evidence=ISO]
[GO:0042162 "telomeric DNA binding" evidence=ISO] [GO:0043066
"negative regulation of apoptotic process" evidence=IMP]
[GO:0043234 "protein complex" evidence=ISO] [GO:0043564 "Ku70:Ku80
complex" evidence=ISO] [GO:0044212 "transcription regulatory region
DNA binding" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0050769 "positive
regulation of neurogenesis" evidence=IMP] [GO:0060218
"hematopoietic stem cell differentiation" evidence=IMP] [GO:0070419
"nonhomologous end joining complex" evidence=ISO] [GO:0071475
"cellular hyperosmotic salinity response" evidence=ISO] [GO:0071481
"cellular response to X-ray" evidence=ISO] InterPro:IPR002035
InterPro:IPR005160 InterPro:IPR006164 InterPro:IPR014893
InterPro:IPR024193 Pfam:PF02735 Pfam:PF03730 Pfam:PF08785
PIRSF:PIRSF016570 SMART:SM00327 SMART:SM00559 MGI:MGI:104517
GO:GO:0005524 GO:GO:0005737 GO:GO:0045892 GO:GO:0043066
GO:GO:0005730 GO:GO:0008283 GO:GO:0006351 GO:GO:0044212
GO:GO:0060218 GO:GO:0050769 GO:GO:0006310 GO:GO:0004003
GO:GO:0000784 GO:GO:0005958 GO:GO:0006303 GO:GO:0070419
GO:GO:0051575 Gene3D:1.10.1600.10 Gene3D:2.40.290.10
InterPro:IPR005161 InterPro:IPR016194 Pfam:PF03731 SUPFAM:SSF100939
GO:GO:0043564 eggNOG:NOG299744 KO:K10885 Gene3D:1.25.40.240
PANTHER:PTHR12604:SF3 SUPFAM:SSF101420 GO:GO:0003691 CTD:7520
HOVERGEN:HBG006237 OrthoDB:EOG4NZTSV EMBL:X66323 EMBL:AF166486
EMBL:AK081633 EMBL:AK165470 EMBL:AK167312 EMBL:AK168913
EMBL:AK169838 EMBL:BC029218 EMBL:BC051660 IPI:IPI00321154
PIR:S26303 RefSeq:NP_033559.2 UniGene:Mm.246952
ProteinModelPortal:P27641 SMR:P27641 IntAct:P27641 STRING:P27641
PhosphoSite:P27641 PaxDb:P27641 PRIDE:P27641
Ensembl:ENSMUST00000027379 GeneID:22596 KEGG:mmu:22596
UCSC:uc007bkl.2 GeneTree:ENSGT00390000015674 InParanoid:P27641
OMA:GYMLGGT NextBio:302945 Bgee:P27641 Genevestigator:P27641
GermOnline:ENSMUSG00000026187 Uniprot:P27641
Length = 732
Score = 371 (135.7 bits), Expect = 7.7e-37, Sum P(2) = 7.7e-37
Identities = 117/478 (24%), Positives = 218/478 (45%)
Query: 214 LELSEKMKIKVWVYKKTGEEKFPTLKKYSDKAPSTDKFATHEVKVDYEYKSVEDPSKVVP 273
L + + IK+ YK +EKF K S +++ + Y +D V
Sbjct: 251 LTIGPNLSIKIVAYKSIVQEKF----KKSWVVVDARTLKKEDIQKETVYCLNDDDETEVS 306
Query: 274 PEQRIKGYRYGPQVVPISSAEWEAVKFKPE-KSVKLLGFTDASNILRHYYM--KDVNLFI 330
E I+GYRYG ++P S + E +K+K E K +LGF +S + R ++M + + +F
Sbjct: 307 KEDTIQGYRYGSDIIPFSKVDEEQMKYKSEGKCFSVLGFCKSSQVHRRFFMGHQVLKVFA 366
Query: 331 AEPGNSRATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPNVSEKINIPDSFYF 390
A+ + A VA+S+L A+ E+N VAIVR + + + + VGV P + + + +
Sbjct: 367 AKDDEA-AAVALSSLVHALDELNMVAIVRYAYDK-RSNPQVGVAFPYIKDAY---ECLVY 421
Query: 391 NVLPFAEDVREFQFPSFSKFPVSWQPNEQQQEAADNLVKMLDLAPSGKGEILQPEL---- 446
LPF ED+R++ F S K P E Q A D+L+ + L + E + +L
Sbjct: 422 VQLPFMEDLRQYMFSSL-KNNKKCTPTEAQLSAIDDLIDSMSLVKKNEEEDIVEDLFPTS 480
Query: 447 -TPNPALERFYHHLELKSEHQDAAPPPLDDSLKKITEPDPTLLAESQSAIDAFCGQFVIK 505
PNP +R Y L ++ H PP+ + + +P + A+ +S + F +
Sbjct: 481 KIPNPEFQRLYQCLLHRALHLQERLPPIQQHILNMLDPPTEMKAKCESPLSKVKTLFPLT 540
Query: 506 ENPKLKKSTRRFLREKPSGSDEPNGDGSVSDAQAVN-SMESKPVVTVDKIGDLTPIQDFE 564
E K K + + + P ++ + + S+ S + K+G + P+++F
Sbjct: 541 EVIKKKNQVTAQDVFQDNHEEGPAAKKYKTEKEEDHISISSLAEGNITKVGSVNPVENFR 600
Query: 565 AMMSRRDCPDWVDKAIEDMKNKIFGLLENSNEGINYPKAVELLVALRKGCILEQEPKQFN 624
++ R+ + + +++ + + I L+ +NE + + K+++ + A R+ I E ++FN
Sbjct: 601 FLV-RQKIASFEEASLQ-LISHIEQFLD-TNETLYFMKSMDCIKAFREEAIQFSEEQRFN 657
Query: 625 DVLEKVCKICRKRNFSTFFDFXXXXXXXXXXXXEAVDSDITDDEAGSFIVKSQPKHED 682
LE + + + + F++ E S IT +EA F+ ED
Sbjct: 658 SFLEALREKVEIKQLNHFWEIVVQDGVTLITKDEGPGSSITAEEATKFLAPKDKAKED 715
Score = 99 (39.9 bits), Expect = 7.7e-37, Sum P(2) = 7.7e-37
Identities = 44/198 (22%), Positives = 95/198 (47%)
Query: 5 REALLLLLDVSPSMHSVLPDVE-------KLCSRLIQKKLIYGKNHEVGVILFGTEETEN 57
+ A++L +DV +M + P E K+ + +Q+++ E+ ++L+GT+ T+N
Sbjct: 7 KAAVVLCVDVGVAMGNSFPGEESPIEQAKKVMTMFVQRQVFSESKDEIALVLYGTDGTDN 66
Query: 58 ELTKEVGGYEHVKVLQDIKVVDGHLVQSLKHLPQGTCA-GDYM--------LIKK--YGE 106
L + Y+++ V + + + D L++ + + Q + D++ LI++ G+
Sbjct: 67 ALAGK-DQYQNITVCRHLMLPDFDLLEDIGNKIQPSSQQADFLDALIVCMDLIQRETIGK 125
Query: 107 TYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKNIV-VRASLSGEPHM 165
+ GKKH+ + TD P +DQ+ I + G+ ++ + +GEP
Sbjct: 126 KF-GKKHIEVFTDLSSPFS-------QDQLDVIICNLKKSGISLQFFLPFPIDKNGEPGE 177
Query: 166 RVIIEN--DNLLNIFSKK 181
R +++ D+L F +K
Sbjct: 178 RGDLDSGLDHLKPSFPQK 195
>UNIPROTKB|J9NYU7 [details] [associations]
symbol:XRCC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043564 "Ku70:Ku80 complex" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006303 "double-strand break
repair via nonhomologous end joining" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] [GO:0000723 "telomere
maintenance" evidence=IEA] InterPro:IPR002035 InterPro:IPR005160
InterPro:IPR006164 InterPro:IPR014893 InterPro:IPR024193
Pfam:PF02735 Pfam:PF03730 Pfam:PF08785 SMART:SM00327 SMART:SM00559
GO:GO:0003677 GO:GO:0004003 GO:GO:0006303 Gene3D:1.10.1600.10
Gene3D:2.40.290.10 InterPro:IPR005161 InterPro:IPR016194
Pfam:PF03731 SUPFAM:SSF100939 KO:K10885 OMA:HRALHPQ
Gene3D:1.25.40.240 PANTHER:PTHR12604:SF3 SUPFAM:SSF101420 CTD:7520
GeneTree:ENSGT00390000015674 EMBL:AAEX03018119 RefSeq:XP_536061.3
Ensembl:ENSCAFT00000045857 GeneID:478902 KEGG:cfa:478902
Uniprot:J9NYU7
Length = 829
Score = 356 (130.4 bits), Expect = 3.5e-36, Sum P(2) = 3.5e-36
Identities = 117/479 (24%), Positives = 218/479 (45%)
Query: 214 LELSEKMKIKVWVYKKTGEEKFPTLKKYSDKAPSTDKFATHEVKVDYEYKSVEDPSKVVP 273
L + + IK+ YK +EK K ++ T K +++ + Y +D VP
Sbjct: 347 LTIGSSLSIKIVAYKSIIQEKVK--KGWTVVDARTLK--KEDLQKETVYCLNDDNETEVP 402
Query: 274 PEQRIKGYRYGPQVVPISSAEWEAVKFKPE-KSVKLLGFTDASNILRHYYMKDVNLFI-A 331
E I+G+RYG +VP S + E +K+K E K +LGF +S + R Y+M + L + A
Sbjct: 403 KEDTIQGFRYGSDIVPFSKVDEEHMKYKLEGKCFSVLGFCRSSQVHRRYFMGNQVLKVFA 462
Query: 332 EPGNSRATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPNVSEKINIPDSFYFN 391
+ A VA+S+L A+ E++ VA+VR + + + VG+ P + + + + +
Sbjct: 463 AKDDEAAAVALSSLIHALDELDMVAVVRYAYDR-RSHPQVGMAFPFIKD---VYECLIYV 518
Query: 392 VLPFAEDVREFQFPSFSKFPVSWQPNEQQQEAADNLVKMLDLAPSGKG----EILQP-EL 446
LPF ED+R++ F SF K P E Q A D L+ + L + E L P
Sbjct: 519 QLPFMEDLRQYMFSSF-KNNKKCTPTEAQLSAVDALIDSMSLIKKDEKDDTIEDLFPTSK 577
Query: 447 TPNPALERFYHHLELKSEHQDAAPPPLDDSLKKITEPDPTLLAESQSAIDAFCGQFVIKE 506
PNP +R + L ++ H PP+ + + +P + + Q + F + E
Sbjct: 578 IPNPQFQRLFQCLLHRALHPQEPLPPIQPHILSMLDPPTEVTTKCQVPLSKIKTIFPLTE 637
Query: 507 NPKLKKSTRRFLREKPSGSDEPNGDGS---VSDAQAVNSMESKPVVTVDKIGDLTPIQDF 563
+KK + ++ + E D + + S+ S +V +G + P ++F
Sbjct: 638 --VIKKKDQVTAQDIFQDNHEEGPDSKKLKTEEGEPCFSISSLAEGSVTSVGSVNPAENF 695
Query: 564 EAMMSRRDCPDWVDKAIEDMKNKIFGLLENSNEGINYPKAVELLVALRKGCILEQEPKQF 623
++ ++ ++A + ++I L+ +NE + K+++ + R+ I E ++F
Sbjct: 696 RVLVRQKKAT--FEEASCQLISRIEQFLD-TNETPYFMKSMDCITVFRQEAIQFSEEQRF 752
Query: 624 NDVLEKVCKICRKRNFSTFFDFXXXXXXXXXXXXEAVDSDITDDEAGSFIVKSQPKHED 682
ND L+ + + + + F++ EA S +T +EA F+ +P +ED
Sbjct: 753 NDFLKALREKVEMKQLNHFWEIVIQDGITLITKDEAPGSSVTAEEAKQFLAPKEPPNED 811
Score = 112 (44.5 bits), Expect = 3.5e-36, Sum P(2) = 3.5e-36
Identities = 39/168 (23%), Positives = 84/168 (50%)
Query: 2 ARTREALLLLLDVSPSMHSVLPDVE-------KLCSRLIQKKLIYGKNHEVGVILFGTEE 54
+R++ A++L +DV +M + P E K+ + +Q+++ E+ ++LFGT+
Sbjct: 100 SRSKAAVVLCMDVGSAMGNSFPGEESPFELAKKVITMFVQRQVFAESRDEIALVLFGTDG 159
Query: 55 TENELTKEVGGYEHVKVLQDIKVVDGHLVQSLKHLPQ-GTCAGDYM--LI--------KK 103
TEN L + Y+++ V + + + D L++ ++ Q G+ D++ LI +
Sbjct: 160 TENALAGK-DQYQNITVHRHLMLPDFDLLEDIERKIQPGSQQADFLDALIVCMDVIQQET 218
Query: 104 YGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMK 151
G+ ++ K+H+ + TD P +DQ+ I + FG+ ++
Sbjct: 219 VGKKFE-KRHIEVFTDLSSPFS-------KDQLDVIIHNLKKFGISLQ 258
>UNIPROTKB|F1SS19 [details] [associations]
symbol:XRCC5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070419 "nonhomologous end joining complex"
evidence=IEA] [GO:0060218 "hematopoietic stem cell differentiation"
evidence=IEA] [GO:0051575 "5'-deoxyribose-5-phosphate lyase
activity" evidence=IEA] [GO:0050769 "positive regulation of
neurogenesis" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0043564 "Ku70:Ku80 complex" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0031625
"ubiquitin protein ligase binding" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003691 "double-stranded telomeric DNA binding" evidence=IEA]
[GO:0000784 "nuclear chromosome, telomeric region" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] InterPro:IPR002035
InterPro:IPR005160 InterPro:IPR006164 InterPro:IPR014893
InterPro:IPR024193 Pfam:PF02735 Pfam:PF03730 Pfam:PF08785
PIRSF:PIRSF016570 SMART:SM00327 SMART:SM00559 GO:GO:0005737
GO:GO:0045892 GO:GO:0043066 GO:GO:0008283 GO:GO:0044212
GO:GO:0060218 GO:GO:0050769 GO:GO:0006310 GO:GO:0004003
GO:GO:0000784 GO:GO:0005958 GO:GO:0006303 GO:GO:0051575
Gene3D:1.10.1600.10 Gene3D:2.40.290.10 InterPro:IPR005161
InterPro:IPR016194 Pfam:PF03731 SUPFAM:SSF100939 GO:GO:0043564
KO:K10885 OMA:HRALHPQ Gene3D:1.25.40.240 PANTHER:PTHR12604:SF3
SUPFAM:SSF101420 GO:GO:0003691 CTD:7520
GeneTree:ENSGT00390000015674 EMBL:CU855571 RefSeq:XP_003133697.2
Ensembl:ENSSSCT00000017615 GeneID:100514133 KEGG:ssc:100514133
Uniprot:F1SS19
Length = 733
Score = 358 (131.1 bits), Expect = 7.5e-36, Sum P(2) = 7.5e-36
Identities = 115/477 (24%), Positives = 215/477 (45%)
Query: 214 LELSEKMKIKVWVYKKTGEEKFPTLKKYSDKAPSTDKFATHEVKVDYEYKSVEDPSKVVP 273
L + + I++ YK +EK K S A +++ + Y +D VP
Sbjct: 251 LTIGSNLSIRIVAYKSILQEKV----KQSWTAVDARTLKKEDIRKETVYCLNDDDETEVP 306
Query: 274 PEQRIKGYRYGPQVVPISSAEWEAVKFKPE-KSVKLLGFTDASNILRHYYMKDVNLFI-A 331
E I+G+RYG ++P S + E +K+K E K +LGF +S + R Y+M + L + A
Sbjct: 307 KEDTIQGFRYGSDIIPFSKVDEEQMKYKSEGKCFSVLGFCRSSQVHRKYFMGNQVLKVFA 366
Query: 332 EPGNSRATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPNVSEKINIPDSFYFN 391
+ A VA+S+L A+ E++ VA+VR + + + + VGV P + + + +
Sbjct: 367 AKDDEAAAVALSSLIHALDELDMVAVVRYAYDK-KANPQVGVAFPYIKDAY---ECLVYI 422
Query: 392 VLPFAEDVREFQFPSFSKFPVSWQPNEQQQEAADNLVKMLDLAPS----GKGEILQPELT 447
LPF ED+R++ F S K P E Q A D+L+ + L G E L P +
Sbjct: 423 QLPFMEDLRQYMFSSL-KNNKKCTPTEAQLSAVDSLIDSMCLVKKDEEEGTVEDLFPTVK 481
Query: 448 -PNPALERFYHHLELKSEHQDAAPPPLDDSLKKITEPDPTLLAESQSAIDAFCGQFVIKE 506
PNP +R + L ++ H PP+ + + +P + A+ Q + F + E
Sbjct: 482 IPNPQFQRLFQCLLHRALHPQEPLPPIQQHILNMLDPPTEVTAKCQIPLSKIKTLFPLTE 541
Query: 507 NPKLKKSTRRFLREKPSGSDEPNGDG-SVSDAQAVNSMESKPVVTVDKIGDLTPIQDFEA 565
K K + + + P+ + +A + S +V ++G +TP ++F
Sbjct: 542 VIKKKDQVTAQDIFQDNHEEAPSSKKLKTEEEEAHFRISSLAEGSVTRVGSVTPAENFRV 601
Query: 566 MMSRRDCPDWVDKAIEDMKNKIFGLLENSNEGINYPKAVELLVALRKGCILEQEPKQFND 625
++ ++ ++A + + I L+ +NE + K+++ + R+ I E ++FN+
Sbjct: 602 LVRQKKAS--FEEASHQLISHIEQFLD-TNETPYFMKSMDCIKVFREEAIQFSEEQRFNN 658
Query: 626 VLEKVCKICRKRNFSTFFDFXXXXXXXXXXXXEAVDSDITDDEAGSFIVKSQPKHED 682
L + + + + F++ EA S +T +EA F+ + +ED
Sbjct: 659 FLRALREKVEMKQLNHFWEIVIQDGMTLITKDEASGSSVTVEEAQKFLEPEENPNED 715
Score = 104 (41.7 bits), Expect = 7.5e-36, Sum P(2) = 7.5e-36
Identities = 39/147 (26%), Positives = 77/147 (52%)
Query: 1 MAR--TREALLLLLDVSPSMHSVLPDVE-------KLCSRLIQKKLIYGKNHEVGVILFG 51
MAR + A++L +DV +M + P E K+ + +Q+++ E+ ++LFG
Sbjct: 1 MARWGNKAAVVLCVDVGFAMSNSFPGEESPFELAKKVITMFVQRQVFAESKDEIALVLFG 60
Query: 52 TEETENELTKEVGGYEHVKVLQDIKVVDGHLVQSLKHLPQ-GTCAGDYM--------LIK 102
T+ TEN L + Y+++ V + +K+ D L++ ++ Q G+ D++ LI+
Sbjct: 61 TDGTENALAGK-DQYQNITVHRHLKLPDFDLLEDIESKIQPGSQQADFLDALIVCMDLIQ 119
Query: 103 K--YGETYKGKKHLCLITDALCPL-KD 126
+ G+ ++ K+H+ + TD P KD
Sbjct: 120 QETIGKKFE-KRHIEVFTDLSSPFSKD 145
>UNIPROTKB|G3V817 [details] [associations]
symbol:Xrcc5 "Protein Xrcc5" species:10116 "Rattus
norvegicus" [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0000784 "nuclear chromosome, telomeric region" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003691
"double-stranded telomeric DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA] [GO:0031625 "ubiquitin protein ligase binding"
evidence=IEA] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA] [GO:0043564 "Ku70:Ku80 complex"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0050769 "positive
regulation of neurogenesis" evidence=IEA] [GO:0051575
"5'-deoxyribose-5-phosphate lyase activity" evidence=IEA]
[GO:0060218 "hematopoietic stem cell differentiation" evidence=IEA]
[GO:0070419 "nonhomologous end joining complex" evidence=IEA]
InterPro:IPR002035 InterPro:IPR005160 InterPro:IPR006164
InterPro:IPR014893 InterPro:IPR024193 Pfam:PF02735 Pfam:PF03730
Pfam:PF08785 PIRSF:PIRSF016570 SMART:SM00327 SMART:SM00559 RGD:3976
GO:GO:0003677 GO:GO:0006310 GO:GO:0004003 GO:GO:0005958
GO:GO:0006303 Gene3D:1.10.1600.10 Gene3D:2.40.290.10
InterPro:IPR005161 InterPro:IPR016194 Pfam:PF03731 SUPFAM:SSF100939
OMA:HRALHPQ Gene3D:1.25.40.240 PANTHER:PTHR12604:SF3
SUPFAM:SSF101420 GeneTree:ENSGT00390000015674 EMBL:CH474044
UniGene:Rn.52078 Ensembl:ENSRNOT00000021656 Uniprot:G3V817
Length = 732
Score = 362 (132.5 bits), Expect = 1.4e-35, Sum P(2) = 1.4e-35
Identities = 116/478 (24%), Positives = 219/478 (45%)
Query: 214 LELSEKMKIKVWVYKKTGEEKFPTLKKYSDKAPSTDKFATHEVKVDYEYKSVEDPSKVVP 273
L + + I++ YK +EKF K S +++ + Y +D V
Sbjct: 251 LTIGPNLSIRIVAYKSIVQEKF----KKSWVVVDARTLKKEDIQKETVYCLNDDDETEVS 306
Query: 274 PEQRIKGYRYGPQVVPISSAEWEAVKFKPE-KSVKLLGFTDASNILRHYYM--KDVNLFI 330
E I+G+RYG ++P S + E +K+K E K +LGF +S + R ++M + + +F
Sbjct: 307 KEDTIQGFRYGSDIIPFSKVDEEQMKYKSEGKCFSVLGFCKSSQVHRRFFMGHQVLKVFA 366
Query: 331 AEPGNSRATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPNVSEKINIPDSFYF 390
A+ + A VA+S+L A+ E+N VAIVR + + + + VGV P + + + +
Sbjct: 367 AKDDEA-AAVALSSLVHALDELNMVAIVRYAYDK-RANPQVGVAFPFIKDAY---ECLVY 421
Query: 391 NVLPFAEDVREFQFPSFSKFPVSWQPNEQQQEAADNLVKMLDLAPSGKGEILQPEL---- 446
LPF ED+R++ F S K P E Q A D+L+ + L + E + +L
Sbjct: 422 VQLPFMEDLRQYMFSSL-KNNKKCTPTEAQLSAIDDLIDSMSLVKKNEEEDIIEDLFPTS 480
Query: 447 -TPNPALERFYHHLELKSEHQDAAPPPLDDSLKKITEPDPTLLAESQSAIDAFCGQFVIK 505
PNP +R Y L ++ H PP+ + + +P + A+ + + F +
Sbjct: 481 KIPNPEFQRLYQCLLHRALHLQERLPPIQQHILNMLDPPTEMKAKCEIPLSKVKTLFPLT 540
Query: 506 ENPKLKKSTRRFLREKPSGSDEPNGDGSVSDAQAVN-SMESKPVVTVDKIGDLTPIQDFE 564
E K K + + + P ++ + + S+ S V K+G + P+++F
Sbjct: 541 EVVKKKDQVTAQDVFQDNIEEGPAAKKYKTEKEEGHISISSLAEGNVTKVGSVNPVENFR 600
Query: 565 AMMSRRDCPDWVDKAIEDMKNKIFGLLENSNEGINYPKAVELLVALRKGCILEQEPKQFN 624
++ R+ + + +++ M + I L+ +NE + + K+++ + ALR+ I E ++FN
Sbjct: 601 VLV-RQKIASFEEASLQLMSH-IEQFLD-TNETLYFMKSMDCIKALREEAIQFSEEQRFN 657
Query: 625 DVLEKVCKICRKRNFSTFFDFXXXXXXXXXXXXEAVDSDITDDEAGSFIVKSQPKHED 682
LE + + + + F++ E+ S +T +EA F+ ED
Sbjct: 658 SFLEGLREKVEIKQLNHFWEIVVQDGITLITKDESPGSSVTAEEATKFLTPKDKAKED 715
Score = 97 (39.2 bits), Expect = 1.4e-35, Sum P(2) = 1.4e-35
Identities = 33/137 (24%), Positives = 69/137 (50%)
Query: 5 REALLLLLDVS-------PSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETEN 57
+ A++L +DV P S L +K+ + +Q+++ E+ ++L+GTE T+N
Sbjct: 7 KAAVVLCMDVGVAMGNSFPGEESPLEQAKKVMTMFVQRQVFSESKDEIALVLYGTESTDN 66
Query: 58 ELTKEVGGYEHVKVLQDIKVVDGHLVQSLKHLPQGTCA-GDYM--------LIKK--YGE 106
L + Y+++ V + + + D L++ + + Q + D++ LI++ G+
Sbjct: 67 ALAGK-DQYQNITVHRHLMLPDFDLLEDIGNKIQPSSQQADFLDALIVCMDLIQRETIGK 125
Query: 107 TYKGKKHLCLITDALCP 123
+ GKKH+ + TD P
Sbjct: 126 KF-GKKHIEVFTDLSSP 141
>UNIPROTKB|F1PH55 [details] [associations]
symbol:XRCC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0070419 "nonhomologous end joining complex"
evidence=IEA] [GO:0060218 "hematopoietic stem cell differentiation"
evidence=IEA] [GO:0051575 "5'-deoxyribose-5-phosphate lyase
activity" evidence=IEA] [GO:0050769 "positive regulation of
neurogenesis" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0043564 "Ku70:Ku80 complex" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0031625
"ubiquitin protein ligase binding" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003691 "double-stranded telomeric DNA binding" evidence=IEA]
[GO:0000784 "nuclear chromosome, telomeric region" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] InterPro:IPR002035
InterPro:IPR005160 InterPro:IPR006164 InterPro:IPR014893
InterPro:IPR024193 Pfam:PF02735 Pfam:PF03730 Pfam:PF08785
PIRSF:PIRSF016570 SMART:SM00327 SMART:SM00559 GO:GO:0005737
GO:GO:0045892 GO:GO:0043066 GO:GO:0008283 GO:GO:0044212
GO:GO:0060218 GO:GO:0050769 GO:GO:0006310 GO:GO:0004003
GO:GO:0000784 GO:GO:0005958 GO:GO:0006303 GO:GO:0051575
Gene3D:1.10.1600.10 Gene3D:2.40.290.10 InterPro:IPR005161
InterPro:IPR016194 Pfam:PF03731 SUPFAM:SSF100939 GO:GO:0043564
Gene3D:1.25.40.240 PANTHER:PTHR12604:SF3 SUPFAM:SSF101420
GO:GO:0003691 GeneTree:ENSGT00390000015674 EMBL:AAEX03018119
Ensembl:ENSCAFT00000022884 Uniprot:F1PH55
Length = 733
Score = 356 (130.4 bits), Expect = 8.9e-35, Sum P(2) = 8.9e-35
Identities = 117/479 (24%), Positives = 218/479 (45%)
Query: 214 LELSEKMKIKVWVYKKTGEEKFPTLKKYSDKAPSTDKFATHEVKVDYEYKSVEDPSKVVP 273
L + + IK+ YK +EK K ++ T K +++ + Y +D VP
Sbjct: 251 LTIGSSLSIKIVAYKSIIQEKVK--KGWTVVDARTLK--KEDLQKETVYCLNDDNETEVP 306
Query: 274 PEQRIKGYRYGPQVVPISSAEWEAVKFKPE-KSVKLLGFTDASNILRHYYMKDVNLFI-A 331
E I+G+RYG +VP S + E +K+K E K +LGF +S + R Y+M + L + A
Sbjct: 307 KEDTIQGFRYGSDIVPFSKVDEEHMKYKLEGKCFSVLGFCRSSQVHRRYFMGNQVLKVFA 366
Query: 332 EPGNSRATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPNVSEKINIPDSFYFN 391
+ A VA+S+L A+ E++ VA+VR + + + VG+ P + + + + +
Sbjct: 367 AKDDEAAAVALSSLIHALDELDMVAVVRYAYDR-RSHPQVGMAFPFIKD---VYECLIYV 422
Query: 392 VLPFAEDVREFQFPSFSKFPVSWQPNEQQQEAADNLVKMLDLAPSGKG----EILQP-EL 446
LPF ED+R++ F SF K P E Q A D L+ + L + E L P
Sbjct: 423 QLPFMEDLRQYMFSSF-KNNKKCTPTEAQLSAVDALIDSMSLIKKDEKDDTIEDLFPTSK 481
Query: 447 TPNPALERFYHHLELKSEHQDAAPPPLDDSLKKITEPDPTLLAESQSAIDAFCGQFVIKE 506
PNP +R + L ++ H PP+ + + +P + + Q + F + E
Sbjct: 482 IPNPQFQRLFQCLLHRALHPQEPLPPIQPHILSMLDPPTEVTTKCQVPLSKIKTIFPLTE 541
Query: 507 NPKLKKSTRRFLREKPSGSDEPNGDGS---VSDAQAVNSMESKPVVTVDKIGDLTPIQDF 563
+KK + ++ + E D + + S+ S +V +G + P ++F
Sbjct: 542 --VIKKKDQVTAQDIFQDNHEEGPDSKKLKTEEGEPCFSISSLAEGSVTSVGSVNPAENF 599
Query: 564 EAMMSRRDCPDWVDKAIEDMKNKIFGLLENSNEGINYPKAVELLVALRKGCILEQEPKQF 623
++ ++ ++A + ++I L+ +NE + K+++ + R+ I E ++F
Sbjct: 600 RVLVRQKKAT--FEEASCQLISRIEQFLD-TNETPYFMKSMDCITVFRQEAIQFSEEQRF 656
Query: 624 NDVLEKVCKICRKRNFSTFFDFXXXXXXXXXXXXEAVDSDITDDEAGSFIVKSQPKHED 682
ND L+ + + + + F++ EA S +T +EA F+ +P +ED
Sbjct: 657 NDFLKALREKVEMKQLNHFWEIVIQDGITLITKDEAPGSSVTAEEAKQFLAPKEPPNED 715
Score = 96 (38.9 bits), Expect = 8.9e-35, Sum P(2) = 8.9e-35
Identities = 37/164 (22%), Positives = 79/164 (48%)
Query: 7 ALLLLLDVSPSMHSVLPDVE-------KLCSRLIQKKLIYGKNHEVGVILFGTEETENEL 59
A++L +DV +M + P E K+ + +Q+++ E+ ++LFGT+ TEN L
Sbjct: 8 AVVLCMDVGSAMGNSFPGEESPFELAKKVITMFVQRQVFAESRDEIALVLFGTDGTENAL 67
Query: 60 TKEVGGYEHVKVLQDIKVVDGHLVQSL--KHLP---QGTCAGDYMLI-------KKYGET 107
+ Y+++ V + + + D L++ + K P Q + D +++ + G+
Sbjct: 68 AGK-DQYQNITVHRHLMLPDFDLLEDIERKIQPGSQQASRVLDALIVCMDVIQQETVGKK 126
Query: 108 YKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMK 151
++ K+H+ + TD P +DQ+ I + FG+ ++
Sbjct: 127 FE-KRHIEVFTDLSSPFS-------KDQLDVIIHNLKKFGISLQ 162
>RGD|3976 [details] [associations]
symbol:Xrcc5 "X-ray repair complementing defective repair in
Chinese hamster cells 5" species:10116 "Rattus norvegicus"
[GO:0000784 "nuclear chromosome, telomeric region" evidence=ISO]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO;IDA]
[GO:0005958 "DNA-dependent protein kinase-DNA ligase 4 complex"
evidence=TAS] [GO:0006302 "double-strand break repair"
evidence=ISO;NAS] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=ISO] [GO:0007420 "brain
development" evidence=IEP] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=ISO]
[GO:0031625 "ubiquitin protein ligase binding" evidence=ISO]
[GO:0042162 "telomeric DNA binding" evidence=ISO] [GO:0042493
"response to drug" evidence=IEP] [GO:0043066 "negative regulation of
apoptotic process" evidence=ISO] [GO:0043234 "protein complex"
evidence=IDA] [GO:0043564 "Ku70:Ku80 complex" evidence=ISO]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0050769 "positive regulation of
neurogenesis" evidence=ISO] [GO:0060218 "hematopoietic stem cell
differentiation" evidence=ISO] [GO:0070419 "nonhomologous end joining
complex" evidence=ISO] [GO:0071398 "cellular response to fatty acid"
evidence=IEP] [GO:0071475 "cellular hyperosmotic salinity response"
evidence=IDA] [GO:0071481 "cellular response to X-ray" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0003691 "double-stranded telomeric DNA
binding" evidence=ISO] [GO:0051575 "5'-deoxyribose-5-phosphate lyase
activity" evidence=ISO] InterPro:IPR005160 InterPro:IPR006164
InterPro:IPR014893 InterPro:IPR024193 Pfam:PF02735 Pfam:PF03730
Pfam:PF08785 PIRSF:PIRSF016570 SMART:SM00559 RGD:3976 GO:GO:0005737
GO:GO:0007420 GO:GO:0042493 GO:GO:0003677 GO:GO:0071398 GO:GO:0006310
GO:GO:0004003 GO:GO:0006302 GO:GO:0005958 GO:GO:0006303 GO:GO:0071475
Gene3D:1.10.1600.10 Gene3D:2.40.290.10 InterPro:IPR005161
InterPro:IPR016194 Pfam:PF03731 SUPFAM:SSF100939 Gene3D:1.25.40.240
PANTHER:PTHR12604:SF3 SUPFAM:SSF101420 HSSP:P13010 GO:GO:0071481
HOVERGEN:HBG006237 UniGene:Rn.52078 EMBL:AB066103 IPI:IPI00421591
STRING:Q8VIB0 UCSC:RGD:3976 InParanoid:Q8VIB0 Genevestigator:Q8VIB0
Uniprot:Q8VIB0
Length = 683
Score = 364 (133.2 bits), Expect = 8.2e-34, Sum P(2) = 8.2e-34
Identities = 116/477 (24%), Positives = 214/477 (44%)
Query: 214 LELSEKMKIKVWVYKKTGEEKFPTLKKYSDKAPSTDKFATHEVKVDYEYKSVEDPSKVVP 273
L + + I++ YK +EKF K S +++ + Y +D V
Sbjct: 202 LTIGPNLSIRIVAYKSIVQEKF----KKSWVVVDARTLKKEDIQKETVYCLNDDDETEVS 257
Query: 274 PEQRIKGYRYGPQVVPISSAEWEAVKFKPE-KSVKLLGFTDASNILRHYYM-KDVNLFIA 331
E I+G+RYG ++P S + E +K+K E K +LGF +S + R ++M V A
Sbjct: 258 KEDTIQGFRYGSDIIPFSKVDEEQMKYKSEGKCFSVLGFCKSSQVHRRFFMGHQVLKVFA 317
Query: 332 EPGNSRATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPNVSEKINIPDSFYFN 391
+ A VA+S+L A+ E+N VAIVR + + + + VGV P + + + +
Sbjct: 318 TKDDEAAAVALSSLVHALDELNMVAIVRYAYDK-RSNPQVGVAFPYIKDAY---ECLVYV 373
Query: 392 VLPFAEDVREFQFPSFSKFPVSWQPNEQQQEAADNLVKMLDLAPSGKGEILQPEL----- 446
LPF ED+R++ F S K P E Q A D+L+ + L + E + +L
Sbjct: 374 QLPFMEDLRQYMFSSL-KNNKKCTPTEAQLSAIDDLIDSMSLVKKNQEEDIIEDLFPTSK 432
Query: 447 TPNPALERFYHHLELKSEHQDAAPPPLDDSLKKITEPDPTLLAESQSAIDAFCGQFVIKE 506
PNP +R Y L ++ H PP+ + + +P + A+ + + F + E
Sbjct: 433 IPNPEFQRLYQCLLHRALHLQERLPPIQQHILNMLDPPTEMKAKCEIPLSKVKTLFPLTE 492
Query: 507 NPKLKKSTRRFLREKPSGSDEPNGDGSVSDAQAVN-SMESKPVVTVDKIGDLTPIQDFEA 565
K K + + + P ++ + + S+ S V K+G + P+++F
Sbjct: 493 VIKKKNQVTAQDVFQDNNEEGPAAKKYRTEKEEGHISISSLAEGNVTKVGSVNPVENFRV 552
Query: 566 MMSRRDCPDWVDKAIEDMKNKIFGLLENSNEGINYPKAVELLVALRKGCILEQEPKQFND 625
+ R+ + + +++ M + I L+ +NE + + K+++ + ALR+ I E ++FN
Sbjct: 553 XV-RQKIASFEEASLQLMSH-IEQFLD-TNETLYFMKSMDCIKALREEAIQFSEEQRFNS 609
Query: 626 VLEKVCKICRKRNFSTFFDFXXXXXXXXXXXXEAVDSDITDDEAGSFIVKSQPKHED 682
LE + + + + F++ E+ S +T +EA F+ ED
Sbjct: 610 FLEGLREKVEIKQLNHFWEIVVQDGITLITKDESPGSSVTAEEATKFLTPKDKAKED 666
Score = 76 (31.8 bits), Expect = 8.2e-34, Sum P(2) = 8.2e-34
Identities = 35/152 (23%), Positives = 72/152 (47%)
Query: 44 EVGVILFGTEETENELTKEVGGYEHVKVLQDIKVVDGHLVQSL--KHLPQGTCAG--DYM 99
E+ ++L+GT+ T+N L + Y+++ V + + + D L++ + K P A D +
Sbjct: 4 EIALVLYGTDGTDNALAGK-DQYQNITVCRHLMLPDFDLLEDIGNKIQPSSQQADFLDAL 62
Query: 100 LI-------KKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKN 152
++ + G+ + GKKH+ + TD P +DQ+ I + G+ ++
Sbjct: 63 IVCMDLIQHETIGKKF-GKKHIEVFTDLSSPFS-------QDQLDVIICNLKKSGISLQF 114
Query: 153 IV-VRASLSGEPHMRVIIEN--DNLLNIFSKK 181
+ +GEP R +++ D+L F +K
Sbjct: 115 FLPFPIDKNGEPGERGDLDSGLDHLKPSFPQK 146
>UNIPROTKB|P13010 [details] [associations]
symbol:XRCC5 "X-ray repair cross-complementing protein 5"
species:9606 "Homo sapiens" [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008283 "cell proliferation" evidence=IEA] [GO:0043066
"negative regulation of apoptotic process" evidence=IEA]
[GO:0050769 "positive regulation of neurogenesis" evidence=IEA]
[GO:0060218 "hematopoietic stem cell differentiation" evidence=IEA]
[GO:0003677 "DNA binding" evidence=NAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0006303 "double-strand break
repair via nonhomologous end joining" evidence=IMP;TAS] [GO:0070419
"nonhomologous end joining complex" evidence=IDA] [GO:0043564
"Ku70:Ku80 complex" evidence=IDA] [GO:0051575
"5'-deoxyribose-5-phosphate lyase activity" evidence=IMP]
[GO:0031625 "ubiquitin protein ligase binding" evidence=IPI]
[GO:0003690 "double-stranded DNA binding" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006302 "double-strand break repair" evidence=TAS] [GO:0016032
"viral reproduction" evidence=TAS] [GO:0000784 "nuclear chromosome,
telomeric region" evidence=IDA] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0000723 "telomere maintenance" evidence=TAS]
[GO:0000783 "nuclear telomere cap complex" evidence=TAS]
[GO:0003691 "double-stranded telomeric DNA binding" evidence=IDA]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_216 InterPro:IPR002035
InterPro:IPR005160 InterPro:IPR006164 InterPro:IPR014893
InterPro:IPR024193 Pfam:PF02735 Pfam:PF03730 Pfam:PF08785
PIRSF:PIRSF016570 SMART:SM00327 SMART:SM00559 GO:GO:0005524
GO:GO:0005737 Reactome:REACT_116125 GO:GO:0045892
Pathway_Interaction_DB:telomerasepathway GO:GO:0043066
GO:GO:0005654 GO:GO:0016032 GO:GO:0008283 EMBL:CH471063
GO:GO:0006351 GO:GO:0044212 GO:GO:0000783 GO:GO:0060218
GO:GO:0050769 GO:GO:0006310 GO:GO:0003690 GO:GO:0004003
Pathway_Interaction_DB:ar_pathway GO:GO:0000723
Pathway_Interaction_DB:bard1pathway GO:GO:0042162 GO:GO:0005958
GO:GO:0006303 GO:GO:0070419 Gene3D:1.10.1600.10 Gene3D:2.40.290.10
InterPro:IPR005161 InterPro:IPR016194 Pfam:PF03731 SUPFAM:SSF100939
GO:GO:0043564 eggNOG:NOG299744 KO:K10885 OMA:HRALHPQ
Gene3D:1.25.40.240 PANTHER:PTHR12604:SF3 SUPFAM:SSF101420
EMBL:J04977 EMBL:M30938 EMBL:AK290740 EMBL:AK222603 EMBL:DQ787434
EMBL:BC019027 EMBL:BC095442 EMBL:X57500 IPI:IPI00220834 PIR:A35051
PIR:D42397 PIR:S62889 RefSeq:NP_066964.1 UniGene:Hs.388739 PDB:1JEQ
PDB:1JEY PDB:1Q2Z PDB:1RW2 PDB:3RZ9 PDBsum:1JEQ PDBsum:1JEY
PDBsum:1Q2Z PDBsum:1RW2 PDBsum:3RZ9 ProteinModelPortal:P13010
SMR:P13010 DIP:DIP-31379N IntAct:P13010 MINT:MINT-131739
STRING:P13010 PhosphoSite:P13010 DMDM:125731 SWISS-2DPAGE:P13010
PaxDb:P13010 PRIDE:P13010 DNASU:7520 Ensembl:ENST00000392132
Ensembl:ENST00000392133 GeneID:7520 KEGG:hsa:7520 UCSC:uc002vfy.3
CTD:7520 GeneCards:GC02P216972 HGNC:HGNC:12833 HPA:CAB004468
HPA:HPA025813 MIM:194364 neXtProt:NX_P13010 PharmGKB:PA37425
HOVERGEN:HBG006237 InParanoid:P13010 OrthoDB:EOG4NZTSV
PhylomeDB:P13010 ChiTaRS:XRCC5 EvolutionaryTrace:P13010
GenomeRNAi:7520 NextBio:29431 PMAP-CutDB:P13010 ArrayExpress:P13010
Bgee:P13010 CleanEx:HS_XRCC5 Genevestigator:P13010
GermOnline:ENSG00000079246 Uniprot:P13010
Length = 732
Score = 345 (126.5 bits), Expect = 1.6e-33, Sum P(2) = 1.6e-33
Identities = 118/474 (24%), Positives = 218/474 (45%)
Query: 214 LELSEKMKIKVWVYKKTGEEKFPTLKKYSDKAPSTDKFATHEVKVDYEYKSVEDPSKVVP 273
L + + I++ YK +E+ D A + K +++ + Y +D V
Sbjct: 251 LTIGSNLSIRIAAYKSILQERVKKTWTVVD-AKTLKK---EDIQKETVYCLNDDDETEVL 306
Query: 274 PEQRIKGYRYGPQVVPISSAEWEAVKFKPE-KSVKLLGFTDASNILRHYYMKDVNLFI-A 331
E I+G+RYG +VP S + E +K+K E K +LGF +S + R ++M + L + A
Sbjct: 307 KEDIIQGFRYGSDIVPFSKVDEEQMKYKSEGKCFSVLGFCKSSQVQRRFFMGNQVLKVFA 366
Query: 332 EPGNSRATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPNVSEKINIPDSFYFN 391
+ A VA+S+L A+ +++ VAIVR + + + + VGV P++ K N Y
Sbjct: 367 ARDDEAAAVALSSLIHALDDLDMVAIVRYAYDK-RANPQVGVAFPHI--KHNYECLVYVQ 423
Query: 392 VLPFAEDVREFQFPSFSKFPVSWQPNEQQQEAADNLVKMLDLAPSG-KGEILQ---PELT 447
LPF ED+R++ F S K + P E Q A D L+ + LA K + L+ P
Sbjct: 424 -LPFMEDLRQYMFSSL-KNSKKYAPTEAQLNAVDALIDSMSLAKKDEKTDTLEDLFPTTK 481
Query: 448 -PNPALERFYHHLELKSEHQDAAPPPLDDSLKKITEPDPTLLAESQSAIDAFCGQFVIKE 506
PNP +R + L ++ H PP+ + + P + +SQ + F + E
Sbjct: 482 IPNPRFQRLFQCLLHRALHPREPLPPIQQHIWNMLNPPAEVTTKSQIPLSKIKTLFPLIE 541
Query: 507 NPKLKKSTRRFLREKPSGSDEPNGDGSVSDAQAVN-SMESKPVVTVDKIGDLTPIQDFEA 565
K + T + + + + D P ++ + S+ S +V +G + P ++F
Sbjct: 542 AKKKDQVTAQEIFQD-NHEDGPTAKKLKTEQGGAHFSVSSLAEGSVTSVGSVNPAENFRV 600
Query: 566 MMSRRDCPDWVDKAIEDMKNKIFGLLENSNEGINYPKAVELLVALRKGCILEQEPKQFND 625
++ ++ ++A + N I L+ +NE + K+++ + A R+ I E ++FN+
Sbjct: 601 LVKQKKAS--FEEASNQLINHIEQFLD-TNETPYFMKSIDCIRAFREEAIKFSEEQRFNN 657
Query: 626 VLEKVCKICRKRNFSTFFDFXXXXXXXXXXXXEAVDSDITDDEAGSFIV-KSQP 678
L+ + + + + F++ EA S +T +EA F+ K +P
Sbjct: 658 FLKALQEKVEIKQLNHFWEIVVQDGITLITKEEASGSSVTAEEAKKFLAPKDKP 711
Score = 96 (38.9 bits), Expect = 1.6e-33, Sum P(2) = 1.6e-33
Identities = 26/105 (24%), Positives = 59/105 (56%)
Query: 5 REALLLLLDVSPSMHSVLPDVE-------KLCSRLIQKKLIYGKNHEVGVILFGTEETEN 57
+ A++L +DV +M + +P +E K+ + +Q+++ E+ ++LFGT+ T+N
Sbjct: 7 KAAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDN 66
Query: 58 ELTKEVGG--YEHVKVLQDIKVVDGHLVQSLKHLPQ-GTCAGDYM 99
L+ GG Y+++ V + + + D L++ ++ Q G+ D++
Sbjct: 67 PLS---GGDQYQNITVHRHLMLPDFDLLEDIESKIQPGSQQADFL 108
>UNIPROTKB|G5E5D1 [details] [associations]
symbol:XRCC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070419 "nonhomologous end joining complex"
evidence=IEA] [GO:0060218 "hematopoietic stem cell differentiation"
evidence=IEA] [GO:0051575 "5'-deoxyribose-5-phosphate lyase
activity" evidence=IEA] [GO:0050769 "positive regulation of
neurogenesis" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0043564 "Ku70:Ku80 complex" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0031625
"ubiquitin protein ligase binding" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003691 "double-stranded telomeric DNA binding" evidence=IEA]
[GO:0000784 "nuclear chromosome, telomeric region" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] InterPro:IPR002035
InterPro:IPR005160 InterPro:IPR006164 InterPro:IPR014893
InterPro:IPR024193 Pfam:PF02735 Pfam:PF03730 Pfam:PF08785
PIRSF:PIRSF016570 SMART:SM00327 GO:GO:0005737 GO:GO:0045892
GO:GO:0043066 GO:GO:0008283 GO:GO:0044212 GO:GO:0060218
GO:GO:0050769 GO:GO:0006310 GO:GO:0004003 GO:GO:0000784
GO:GO:0005958 GO:GO:0006303 GO:GO:0051575 Gene3D:1.10.1600.10
Gene3D:2.40.290.10 InterPro:IPR005161 InterPro:IPR016194
Pfam:PF03731 SUPFAM:SSF100939 GO:GO:0043564 OMA:HRALHPQ
Gene3D:1.25.40.240 PANTHER:PTHR12604:SF3 SUPFAM:SSF101420
GO:GO:0003691 GeneTree:ENSGT00390000015674 EMBL:DAAA02005881
EMBL:DAAA02005882 EMBL:DAAA02005883 EMBL:DAAA02005884
Ensembl:ENSBTAT00000013758 Uniprot:G5E5D1
Length = 733
Score = 313 (115.2 bits), Expect = 8.2e-29, Sum P(2) = 8.2e-29
Identities = 113/477 (23%), Positives = 204/477 (42%)
Query: 214 LELSEKMKIKVWVYKKTGEEKFPTLKKYSDKAPSTDKFATHEVKVDYEYKSVEDPSKVVP 273
L + + IK+ YK +EK D A + K A + V Y +D V
Sbjct: 251 LTIGSNLSIKIVAYKSITQEKVKKCWTVVD-ARTLKKEAIQKETV---YCLNDDDETEVS 306
Query: 274 PEQRIKGYRYGPQVVPISSAEWEAVKFKPE-KSVKLLGFTDASNILRHYYMKDVNLFI-A 331
E I+G+RYG ++P S + E +K+K E K +LGF +S + Y+M + L + A
Sbjct: 307 KEDTIQGFRYGSDIIPFSKVDEEQMKYKSEGKCFSVLGFCRSSQVHMKYFMGNQVLKVFA 366
Query: 332 EPGNSRATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPNVSEKINIPDSFYFN 391
+ + V +S+ +E++ + R W Q Q V G P + + + +
Sbjct: 367 AKDDEASEVTLSSGYHMKQELDSASCQRINWNQ-QSDVEEGSAYPL---QYSCWECLVYI 422
Query: 392 VLPFAEDVREFQFPSFSKFPVSWQPNEQQQEAADNLVKMLDLAPS----GKGEILQP-EL 446
LPF ED+R++ FPS K P E Q A D L+ + L G E L P
Sbjct: 423 QLPFMEDLRQYMFPSL-KNNRKCTPTEAQLSAVDALIDSMSLVQKDEEEGTIEDLFPTSK 481
Query: 447 TPNPALERFYHHLELKSEHQDAAPPPLDDSLKKITEPDPTLLAESQSAIDAFCGQFVIKE 506
PNP +R + L ++ H PP+ + + +P + A+ Q + F + E
Sbjct: 482 IPNPQFQRLFQCLLHRALHPQEPLPPIQQHILSMLDPPTEVTAKCQVPLSKIKTLFPLTE 541
Query: 507 NPKLKKSTRRFLREKPSGSDEPNGDG-SVSDAQAVNSMESKPVVTVDKIGDLTPIQDFEA 565
K K + + + P + +A S+ S +V +G + P ++F
Sbjct: 542 VIKKKNQVTGQDIFQDNHEEGPTCKKLKTEEEEAHFSVSSLAEGSVTCVGSVNPAENFRV 601
Query: 566 MMSRRDCPDWVDKAIEDMKNKIFGLLENSNEGINYPKAVELLVALRKGCILEQEPKQFND 625
++ ++ ++A + N I L+ +NE + + K+++ + A R+ I E ++FN+
Sbjct: 602 LVRQKKAT--FEEASHQLINHIEQFLD-TNETLYFMKSMDCIKAFREEAIQFSEEQRFNN 658
Query: 626 VLEKVCKICRKRNFSTFFDFXXXXXXXXXXXXEAVDSDITDDEAGSFIVKSQPKHED 682
L+ + + + + F++ EA S +T +EA F+ + + D
Sbjct: 659 FLKALREKVEVKQLNHFWEIVVHDGVTLITKDEAPGSSVTTEEAKKFLAPKENANAD 715
Score = 86 (35.3 bits), Expect = 8.2e-29, Sum P(2) = 8.2e-29
Identities = 36/143 (25%), Positives = 72/143 (50%)
Query: 1 MART--REALLLLLDVSPSMHSVLPDVE-------KLCSRLIQKKLIYGKNHEVGVILFG 51
MAR+ + A++L +DV +M + P E K+ + +Q+++ EV ++LFG
Sbjct: 1 MARSWDKAAVVLCMDVGLAMSNSFPGEESPFELAKKVMTMFVQRQVFAENKDEVALVLFG 60
Query: 52 TEETENELTKEVGGYEHVKVLQDIKVVDGHLVQSLKHLPQ-GTCAGDYM--------LIK 102
T+ T+N L Y+++ V + + D L++ ++ Q G+ D + LI+
Sbjct: 61 TDGTKNALAAG-DQYQNITVHRHLMRPDFDLLEDIESKIQPGSQQADLLDALIVCMDLIQ 119
Query: 103 K--YGETYKGKKHLCLITDALCP 123
+ G+ ++ K+H+ + TD P
Sbjct: 120 EETLGKKFE-KRHIEVFTDLSSP 141
>ASPGD|ASPL0000075053 [details] [associations]
symbol:nkuB species:162425 "Emericella nidulans"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0000781
"chromosome, telomeric region" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IEA] [GO:0000084 "S phase of mitotic cell cycle"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
InterPro:IPR002035 InterPro:IPR005160 InterPro:IPR006164
InterPro:IPR014893 InterPro:IPR024193 Pfam:PF02735 Pfam:PF08785
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006310
GO:GO:0004003 EMBL:BN001303 GO:GO:0000781 GO:GO:0006303
EMBL:AACD01000078 Gene3D:1.10.1600.10 Gene3D:2.40.290.10
InterPro:IPR005161 InterPro:IPR016194 Pfam:PF03731 SUPFAM:SSF100939
eggNOG:NOG299744 KO:K10885 Gene3D:1.25.40.240 PANTHER:PTHR12604:SF3
SUPFAM:SSF101420 RefSeq:XP_662156.1 HSSP:P13010
ProteinModelPortal:Q5B4H8 STRING:Q5B4H8
EnsemblFungi:CADANIAT00005886 GeneID:2872348 KEGG:ani:AN4552.2
HOGENOM:HOG000184379 OMA:GYEYGRT OrthoDB:EOG4897WC Uniprot:Q5B4H8
Length = 725
Score = 243 (90.6 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 97/437 (22%), Positives = 191/437 (43%)
Query: 260 YEYKSVEDPS-KV-VPPEQRIKGYRYGPQVVPISSAEWEAVKFKPEKSVKLLGFTDASNI 317
Y+ P K+ V + KGY YG V IS + + + +++L+GF +
Sbjct: 307 YQVSDESAPGGKIDVERDDLAKGYEYGRTAVHISETDENITRLETTAAMELVGFIQSERY 366
Query: 318 LRHYYMKDVNLFIAEPGNSRATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPN 377
R+ ++ + ++ IA N +A++A+S+ A+ E+ A+ R V ++ + +V +L P+
Sbjct: 367 DRYMHLSNTHIIIANRANDKASLALSSFIHALFELESYAVARLVTKENKPPTLV-LLAPS 425
Query: 378 VSEKINIPD-SFYFNV-LPFAEDVREFQFPSFSKF-PVSWQ--------PNEQQQEAADN 426
+ PD V LPFAEDVR ++FP VS + PN+ +A D
Sbjct: 426 IE-----PDYECLLEVQLPFAEDVRTYRFPPLDHVVTVSGKVVTQHRNLPNDDLLDAMDK 480
Query: 427 LVKMLDLAPSGK-GEILQPEL----TPNPALERFYHHLELKSEH-QDAAPPPLDDSLKKI 480
V ++L + + G+++ + +P L R + ++ H D PPP L +
Sbjct: 481 YVDSMELKGTDEDGDLVNTPFPIDDSFSPVLHRVNAAIRSRAIHPNDPIPPPAR-ILTQF 539
Query: 481 TEPDPTLLAESQSAIDAFCGQFVIKENPKLKKSTRRFLREKPSGSDEPNGDGSVSDAQAV 540
++P LL ++ + +K+ P K +R + EP S D ++
Sbjct: 540 SQPPEHLLKNAERHLKRLIEVADVKKVPPKAKGRKR--------AREPEKPLSGLDVDSL 591
Query: 541 NSMESKPVVTVDKIGDLTPIQDFEAMMSRRDCPDWVDKAIEDMKNKIFGLLENSNEGINY 600
E + +I I +F+ +++ + + + A++ M++ + + +S NY
Sbjct: 592 LHQEKRV-----RISPNNAIPEFKQTLAQAENIETMKDAVKQMRSILEDQIRHSLGDANY 646
Query: 601 PKAVELLVALRKGCILEQEPKQFNDVLEKVCKICRKRNFS----TFFDFXXXXXXXXXXX 656
+ E L +R+ I +EP +ND++ K+ + K +
Sbjct: 647 DRVTEGLGVVREELIAYEEPGLYNDLIRKLKEALLKEKLGGDQRELWWLLKRSKLGLIEQ 706
Query: 657 XEAVDSDITDDEAGSFI 673
E+ S++T++EA F+
Sbjct: 707 RESELSEVTEEEAKKFM 723
Score = 80 (33.2 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 63/278 (22%), Positives = 110/278 (39%)
Query: 5 REALLLLLDVSPSMHSV-----LPDVE---KLCSRLIQKKLIYG-KNHEVGVILFGTEET 55
+EA + ++DV SM L D+E K I + G K +GVI T+ T
Sbjct: 4 KEATVYIVDVGKSMGERRNGRDLTDLEWAMKYVWDCITNTVATGRKTAMLGVIGLKTDGT 63
Query: 56 ENELTKEVGGYEHVKVLQDIKVVDGHLVQSLKHL-----PQGTCAGDYM--------LIK 102
+NEL E + H+ VL +IK L+ ++ L P GD + +I
Sbjct: 64 DNELGDE-SHFSHISVLSEIKQF---LMSDIRELGERIKPSSVDKGDAISALILAIQMII 119
Query: 103 KYGETYKGKKHLCLITDALCPLKDPDVG-----TKEDQVSTIARQMVAFGLRMKNIV-VR 156
+ + K K+ + LIT+ L + ++ KED + I + G R +
Sbjct: 120 THCKKLKWKRKIVLITNGLGRMNSENLDDIVSKVKEDNIELIILDLT--GRRGPDFDDAE 177
Query: 157 ASLSGE---PHMRVIIENDNLLNIFSKKSSAKTLFVDSTTSLRGARKTRDISPVTIFRGD 213
+ E PH N+ LL +++ ++ + + + PV F+G
Sbjct: 178 YGIKEEDKDPHKA---SNETLLRTITERCDGVFGTLEQAVEETEIPRVKPVRPVASFKGF 234
Query: 214 LELSEKMKIKVWVYKKTGEEKFPTLKKYSDKAPSTDKF 251
L+L + V + E++P + K P+ +F
Sbjct: 235 LQLGNPEEYDTAV--RIPVERYP--RTMVAKPPTASQF 268
>POMBASE|SPBC543.03c [details] [associations]
symbol:pku80 "Ku domain protein Pku80" species:4896
"Schizosaccharomyces pombe" [GO:0000084 "S phase of mitotic cell
cycle" evidence=IMP] [GO:0000723 "telomere maintenance"
evidence=IMP] [GO:0000781 "chromosome, telomeric region"
evidence=IDA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IMP] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IDA] [GO:0043564
"Ku70:Ku80 complex" evidence=IEA] InterPro:IPR005160
InterPro:IPR006164 InterPro:IPR014893 InterPro:IPR024193
Pfam:PF02735 Pfam:PF08785 PIRSF:PIRSF016570 SMART:SM00559
PomBase:SPBC543.03c GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0006310 GO:GO:0004003
GO:GO:0000084 GO:GO:0000781 GO:GO:0000723 GO:GO:0042162
GO:GO:0005958 GO:GO:0006303 Gene3D:1.10.1600.10 Gene3D:2.40.290.10
InterPro:IPR005161 InterPro:IPR016194 Pfam:PF03731 SUPFAM:SSF100939
eggNOG:NOG299744 KO:K10885 Gene3D:1.25.40.240 PANTHER:PTHR12604:SF3
SUPFAM:SSF101420 OrthoDB:EOG4897WC RefSeq:NP_596791.1
ProteinModelPortal:Q9HGM8 STRING:Q9HGM8 EnsemblFungi:SPBC543.03c.1
GeneID:2541045 KEGG:spo:SPBC543.03c OMA:DENITLR NextBio:20802159
Uniprot:Q9HGM8
Length = 695
Score = 214 (80.4 bits), Expect = 9.1e-18, Sum P(2) = 9.1e-18
Identities = 89/385 (23%), Positives = 167/385 (43%)
Query: 265 VEDP----SKVVPPEQRIKGYRYGPQVVPISSAEWEAVKFKPEKSVKLLGFTDASNILRH 320
V DP S V E GY YG +VPIS ++ + + ++LGF S++ +
Sbjct: 299 VRDPKTNDSFEVKREDLESGYSYGRTIVPISRSDEDVLALDTIPGYEILGFIPKSSLPIY 358
Query: 321 YYMKDVNLFIAEPGNSRATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPNVSE 380
Y + D N+ + + + + + SA ++++ ++ A+ R V + V++ VL P V
Sbjct: 359 YTISDTNIIVPKD-DFESKLNFSAFVQSLEREHRYALARFVSKDKGVPVLL-VLMPYVEF 416
Query: 381 KINIPDSFYFNV-LPFAEDVREFQFPSFSKFPVSWQPNEQQQEAADNLVKMLDLAPSGKG 439
K + + ++ LPFAEDVR + F F K + + Q A N + +DL S G
Sbjct: 417 KRH----YLVDIQLPFAEDVRPYSFSEFEKLS-NEEDMRQIDFAVSNYIDNMDLDSSDCG 471
Query: 440 EILQPELTPNPALERFYHHLELKSEHQDAAP----PPLDDSLKKITEPDPTLLAESQSAI 495
P P H L+ + +P P + L + T P +LL +
Sbjct: 472 --FNPPFEPENTFSMIPHRLQQAISYYANSPEGDLPQPNIYLTRYTNPPKSLLDNCILDL 529
Query: 496 DAFCGQFVIKENPKLKKSTRRFLREKPSGSDEPNGDGSVSDA--QAVNSMESKPVVTVDK 553
+ + K K S++ E + P + + + ++ E + ++ +
Sbjct: 530 KLIKEKLTVNVPVKPKYSSQ----ETAFDTGAPISEEQIEELLNSGLDEQEGEKLLVLH- 584
Query: 554 IGDLTPIQDFEAMMSRRDCPDWVDKAIEDMKNKIFGLLENSNEGINYPKAVELLVALRKG 613
+ + P+ F ++ P ++ A+ +M+ I L++ S Y A++ L +LR
Sbjct: 585 VSEKDPVGTFTEVLKN---PFGLEDALTEMEKVIKNLIDKSK----YDLALQSLQSLRLH 637
Query: 614 CILEQEPKQFNDVLEKVCKICRKRN 638
ILE E ++FN+ L ++ K + N
Sbjct: 638 SILEDEVERFNEYLTRLKKDVMQNN 662
Score = 85 (35.0 bits), Expect = 9.1e-18, Sum P(2) = 9.1e-18
Identities = 50/248 (20%), Positives = 102/248 (41%)
Query: 32 LIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVVDGHLVQSLKHL-- 89
L K L K VG++ + ++T+N+L ++ Y ++ VL I+ +QS+
Sbjct: 40 LSHKFLANRKTDVVGIVGYKCDDTKNDLAEQEA-YWNISVLYPIQTALFSKLQSVSQTLK 98
Query: 90 PQGTCAGDYM--------LIKKYGETYKGKKHLCLITDALCPLKDPD-VGTKEDQVS-TI 139
P T GD + L+ ++ + K KK + ++T A + D +G E + +
Sbjct: 99 PSNTMQGDLISAIVVSFDLMARHCKKNKWKKKMIVLTAARGIIDFSDYIGIAEQLLQHDV 158
Query: 140 ARQMVAFGLRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTLFVDSTTSLRGAR 199
+ ++I L E + EN+ + F + + + G
Sbjct: 159 FLGVYGVDFDQEDINYSEPLK-ESQKK---ENEVRIQEFVESCHGQYCTFQQIYNNIGKP 214
Query: 200 KTRDISPVTIFRGDLELSEKMKIKVWVYKKTGEEKFPTLKKYSDKAPSTDKFATHEVKVD 259
R + PV IFRG + + + + E++P + K P++ F +++ +
Sbjct: 215 WVRKVRPVAIFRGTFSIGNRDSKDTSISIQV--ERYPRTRL--TKPPTSSAFYENDMSKN 270
Query: 260 YEYKSVED 267
YE ++E+
Sbjct: 271 YECLNIEN 278
>ASPGD|ASPL0000064203 [details] [associations]
symbol:nkuA species:162425 "Emericella nidulans"
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IMP] [GO:0006348 "chromatin silencing at
telomere" evidence=IMP] [GO:0000781 "chromosome, telomeric region"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0042162
"telomeric DNA binding" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0005958
"DNA-dependent protein kinase-DNA ligase 4 complex" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0000084 "S phase of mitotic cell cycle" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] InterPro:IPR003034
InterPro:IPR005160 InterPro:IPR006164 InterPro:IPR006165
Pfam:PF02037 Pfam:PF02735 Pfam:PF03730 PIRSF:PIRSF003033
PROSITE:PS50800 SMART:SM00513 SMART:SM00559 GO:GO:0005524
GO:GO:0003677 Gene3D:1.10.720.30 GO:GO:0006310 EMBL:BN001304
GO:GO:0004003 EMBL:AACD01000132 GO:GO:0000781 GO:GO:0005958
GO:GO:0006303 HSSP:P12956 eggNOG:NOG305318 KO:K10884
Gene3D:1.10.1600.10 Gene3D:2.40.290.10 InterPro:IPR005161
InterPro:IPR016194 PANTHER:PTHR12604:SF2 Pfam:PF03731
SUPFAM:SSF100939 TIGRFAMs:TIGR00578 RefSeq:XP_681022.1
ProteinModelPortal:Q5AVC7 STRING:Q5AVC7 GeneID:2869733
KEGG:ani:AN7753.2 HOGENOM:HOG000174738 OrthoDB:EOG48WG97
Uniprot:Q5AVC7
Length = 629
Score = 149 (57.5 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 70/272 (25%), Positives = 121/272 (44%)
Query: 266 EDPSKVVPPEQRIKGYRYGPQVVPISSAEWEAVKFKPEKSVKLLGFTDASNILRHYYMKD 325
+D ++ + + K Y++G V + E +++K E ++++GF S + +K
Sbjct: 305 DDSARTIEKWEIKKAYKFGGDQVCFTPEEQKSLKDFGEPVIRIIGFKPLSTLPFWANIKH 364
Query: 326 VNLFI--AEPGNSRATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPNVSEKIN 383
LFI E +T SAL + + KVA+V + R+ S V+G + EK++
Sbjct: 365 P-LFIYPTEEDYVGSTRVFSALYQKLLRDQKVALVWYIARKAA-SPVLGAMMAG-EEKVD 421
Query: 384 ------IPDSFYFNVLPFAEDVREFQFPSFSKFPVSWQPNEQQQEAADNLVKMLDLAPSG 437
IP + LPFA+DVR Q P + V+ +P Q +++ L L P G
Sbjct: 422 ENGIQKIPPGMWIIPLPFADDVR--QNPE-TALQVAPEPLIDQMRT---VIQQLQL-PKG 474
Query: 438 KGEILQPELTPNPALERFYHHLELKSEHQDAAPPPLDDSLKKITEPDPTLLAESQSAIDA 497
+ P+ PNP+L+ Y L+ + +D P D ++ K + D D
Sbjct: 475 ---VYDPQKYPNPSLQWHYRILQALALDEDVPEKPDDKTIPKYRQIDKRAGGYVLDWADE 531
Query: 498 FCGQFVIKENPKLKKSTRRFLREKPSGSDEPN 529
Q+ K KST L ++P+ +D P+
Sbjct: 532 LEKQYA-KITADQPKSTT--LAKRPAKADNPD 560
Score = 69 (29.3 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 18/69 (26%), Positives = 36/69 (52%)
Query: 27 KLCSRLIQKKLIYGKNHEVGVILFGTEET----ENELTKEVGGYEHVKVLQDIKVVDGHL 82
K L+Q+++I +GV+L+GT+++ E+E ++ Y + + D+ + H
Sbjct: 41 KCAYHLMQQRIISNPRDMIGVLLYGTKQSKFYDEDENSRGDLTYPNCYLFTDLNIPSAHE 100
Query: 83 VQSLKHLPQ 91
V L+ L Q
Sbjct: 101 VLELRSLVQ 109
>POMBASE|SPCC126.02c [details] [associations]
symbol:pku70 "Ku domain protein Pku70" species:4896
"Schizosaccharomyces pombe" [GO:0000084 "S phase of mitotic cell
cycle" evidence=IMP] [GO:0000723 "telomere maintenance"
evidence=IMP] [GO:0000781 "chromosome, telomeric region"
evidence=IDA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IMP] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0043564 "Ku70:Ku80 complex" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IPI]
InterPro:IPR002035 InterPro:IPR003034 InterPro:IPR005160
InterPro:IPR006164 InterPro:IPR006165 Pfam:PF02037 Pfam:PF02735
Pfam:PF03730 PIRSF:PIRSF003033 PROSITE:PS50800 SMART:SM00327
SMART:SM00513 SMART:SM00559 PomBase:SPCC126.02c GO:GO:0005524
GO:GO:0005634 EMBL:CU329672 GenomeReviews:CU329672_GR
Gene3D:1.10.720.30 GO:GO:0006310 GO:GO:0004003 GO:GO:0000084
GO:GO:0000781 GO:GO:0000723 GO:GO:0042162 GO:GO:0005958
GO:GO:0006303 eggNOG:NOG305318 KO:K10884 OMA:RTFNVNT
Gene3D:1.10.1600.10 Gene3D:2.40.290.10 InterPro:IPR005161
InterPro:IPR016194 PANTHER:PTHR12604:SF2 Pfam:PF03731
SUPFAM:SSF100939 TIGRFAMs:TIGR00578 HOGENOM:HOG000174738
OrthoDB:EOG48WG97 PIR:T40906 RefSeq:NP_588445.1
ProteinModelPortal:O94395 STRING:O94395 EnsemblFungi:SPCC126.02c.1
GeneID:2539090 KEGG:spo:SPCC126.02c NextBio:20800262 Uniprot:O94395
Length = 607
Score = 134 (52.2 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 111/504 (22%), Positives = 205/504 (40%)
Query: 7 ALLLLLDVSPSMHSVLPD-------VEKLCS-RLIQKKLIYGKNHEVGVILFGTEETENE 58
A+L +++VSPSM + + + +C+ +L +++I + +GV+L+GTE +
Sbjct: 19 AILFVIEVSPSMLDPVDEFTPSSLQMALICAYQLAAQRVITNPSDIMGVLLYGTESSTGR 78
Query: 59 LTKEV-------GGYEHVKVLQDIKVVDGHLVQSLKHLPQGTCAGDYMLIKKYGETYKGK 111
++ E +K LQ + + K + T K +
Sbjct: 79 FANQMMLLDIDPPDAERIKSLQSFEKDFQFSKEKFKPCSCQVSLSSVLYHCSVIFTTKAE 138
Query: 112 ---KHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKNIVVRASLSGEP-H-MR 166
K L LITD P D T+ D + A+ LR +I V P H R
Sbjct: 139 NFEKRLFLITDNDHPAWD---ATERDIILQRAKD-----LRDLDIQVHPVFLDPPTHSFR 190
Query: 167 V-IIENDNLLNIFSKKSSAKTLFVDSTTSLRGARKTRDISPVTIFRGDLELSEKMKIKVW 225
+ I +D L ++ ++ V + + A+ ++ +T + +K+ +
Sbjct: 191 INIFYSDFLYIVYGRQD------VSNLVNRGQAQLQHMLNMITALQKPKRAHFHLKMDLG 244
Query: 226 VYKKTGEEKFPTLKKYSDKAPSTDKFATHE---VKVDYEYKSVEDPSKVVPPEQRIK-GY 281
+ G E F LK+ + A + +A E V V + K V +K + I+ Y
Sbjct: 245 NDVRIGVEAFILLKRL-ESAKTNWVYAKGERFAVAVP-QSKQVSFATKKELKKDEIRRSY 302
Query: 282 RYGPQVVPISSAEWEAVK-FKPEKSVKLLGFTDASNILRHYYMKDVNLFIAEPGNSRATV 340
YG V S E V+ F+P +++++GF D S + + +K + +
Sbjct: 303 SYGGSSVVFGSDELNKVRSFEPP-TLRIIGFRDFSTLKPWHCLKPAVFLRPKDDEIIGSG 361
Query: 341 AV-SALARAMKEMNKVAIVRCVWRQGQQSVVVGVL-TP---NVSEKINIPDSFYFNVLPF 395
AV SA+ + + NK+ I V R V +L TP ++ + +P + LP
Sbjct: 362 AVFSAIHKKLLASNKIGIAWFVSRPNANPCFVAMLATPGSIHIRDDFELPLGIFLVQLPT 421
Query: 396 AEDVREFQFPSFSKFPVSWQPNEQQQEAADNLVKMLDLAPSGKGEILQPELTPNPALERF 455
A+D+R P + P+S N E +++ ++L QP NP+L+
Sbjct: 422 ADDIRSL--PPINPNPISMPSN--LIETMQRILRGMELRS------YQPGKYNNPSLQWH 471
Query: 456 YHHLELKSEHQDAAPPPLDDSLKK 479
Y L+ + ++ +D++L K
Sbjct: 472 YKVLQALALDEEIPTDFVDNTLPK 495
>UNIPROTKB|F1NED5 [details] [associations]
symbol:XRCC6 "X-ray repair cross-complementing protein 5"
species:9031 "Gallus gallus" [GO:0000723 "telomere maintenance"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0003691 "double-stranded telomeric DNA binding" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006303 "double-strand
break repair via nonhomologous end joining" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0010212
"response to ionizing radiation" evidence=IEA] [GO:0033151 "V(D)J
recombination" evidence=IEA] [GO:0043564 "Ku70:Ku80 complex"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0050769 "positive regulation of neurogenesis"
evidence=IEA] [GO:0051575 "5'-deoxyribose-5-phosphate lyase
activity" evidence=IEA] [GO:0070419 "nonhomologous end joining
complex" evidence=IEA] InterPro:IPR003034 InterPro:IPR005160
InterPro:IPR006164 InterPro:IPR006165 Pfam:PF02037 Pfam:PF02735
Pfam:PF03730 PIRSF:PIRSF003033 PROSITE:PS50800 SMART:SM00513
SMART:SM00559 GO:GO:0005737 GO:GO:0045892 GO:GO:0045944
GO:GO:0010212 GO:GO:0005667 GO:GO:0044212 Gene3D:1.10.720.30
GO:GO:0004003 GO:GO:0005958 GO:GO:0006303 GO:GO:0051575 OMA:RTFNVNT
Gene3D:1.10.1600.10 Gene3D:2.40.290.10 InterPro:IPR005161
InterPro:IPR016194 PANTHER:PTHR12604:SF2 Pfam:PF03731
SUPFAM:SSF100939 TIGRFAMs:TIGR00578 GeneTree:ENSGT00390000001422
GO:GO:0043564 GO:GO:0003691 IPI:IPI00819602 EMBL:AADN02006063
EMBL:AADN02006064 Ensembl:ENSGALT00000037980 ArrayExpress:F1NED5
Uniprot:F1NED5
Length = 624
Score = 110 (43.8 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
Identities = 44/197 (22%), Positives = 85/197 (43%)
Query: 269 SKVVPPEQRIKGYRYGPQVVPISSAEWEAVKFKPEKSVKLLGFTDASNILRHYYMKDVNL 328
S ++P + + + YG + + + E E VK + L+GF S + +H++++
Sbjct: 320 SLLLPSDTK-RAQTYGNRQIAMEKEETEEVKRFDSPGLFLIGFKPLSMLKQHHHIRPSQF 378
Query: 329 FIAEPGN-SRATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPN--VSE-KINI 384
E + +T +AL E +A+ R + R+ +V ++ V E K+ I
Sbjct: 379 MYPEESLVTGSTTLFNALLMKCLEKEVMALCRYIARRNTPPRIVALIPQEEEVDEQKVQI 438
Query: 385 -PDSFYFNVLPFAEDVREFQFPSFSKFPVSWQPNEQQQEAADNLVKMLDLAPSGKGEILQ 443
P F+ LP+A+D R F K P N +Q + +++ L +
Sbjct: 439 APPGFHIIFLPYADDKRNVDFTE--KVPA----NREQVDKMKEIIQKLRFK-------YR 485
Query: 444 PELTPNPALERFYHHLE 460
+ NP L++ + +LE
Sbjct: 486 TDSFENPVLQQHFRNLE 502
Score = 67 (28.6 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
Identities = 22/80 (27%), Positives = 39/80 (48%)
Query: 5 REALLLLLDVSPSM-------HSVLP-DVEKLCSRLIQ-KKLIYGKNHEVGVILFGTEET 55
R++L+ L+D S +M + P D+ C R + K+I + V+ +GTE
Sbjct: 45 RDSLIFLVDASKAMFEPYEDEEAATPFDMTMQCIRNVYTSKIISSDKDLLSVVFYGTENN 104
Query: 56 ENELTKEVGGYEHVKVLQDI 75
+N ++HV VLQ++
Sbjct: 105 KNS-----ADFKHVYVLQEL 119
>ZFIN|ZDB-GENE-030131-6420 [details] [associations]
symbol:xrcc6 "X-ray repair complementing defective
repair in Chinese hamster cells 6" species:7955 "Danio rerio"
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IEA] [GO:0000723 "telomere
maintenance" evidence=IEA] [GO:0043564 "Ku70:Ku80 complex"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0010212 "response to
ionizing radiation" evidence=IMP] InterPro:IPR002035
InterPro:IPR003034 InterPro:IPR005160 InterPro:IPR006164
InterPro:IPR006165 Pfam:PF02037 Pfam:PF02735 Pfam:PF03730
PIRSF:PIRSF003033 PROSITE:PS50234 SMART:SM00327 SMART:SM00513
SMART:SM00559 ZFIN:ZDB-GENE-030131-6420 GO:GO:0003677 GO:GO:0010212
Gene3D:1.10.720.30 GO:GO:0004003 GO:GO:0005958 GO:GO:0006303
Gene3D:1.10.1600.10 Gene3D:2.40.290.10 InterPro:IPR005161
InterPro:IPR016194 PANTHER:PTHR12604:SF2 Pfam:PF03731
SUPFAM:SSF100939 TIGRFAMs:TIGR00578 HOVERGEN:HBG006236
EMBL:DQ859046 IPI:IPI01004831 UniGene:Dr.81334
ProteinModelPortal:Q06IS3 SMR:Q06IS3 STRING:Q06IS3
InParanoid:Q06IS3 Uniprot:Q06IS3
Length = 610
Score = 104 (41.7 bits), Expect = 9.3e-05, Sum P(2) = 9.3e-05
Identities = 57/275 (20%), Positives = 113/275 (41%)
Query: 271 VVPPEQRIKGYRYGPQVVPISSAEWEAVKFKPEKSVKLLGFTDASNILRHYYMKDVNLFI 330
++ P + YG + + + E + +K + + L+GF + H++++ LFI
Sbjct: 307 ILLPNDTKRAQVYGQKQIVMEKDEVDEIKKFDDPGLVLIGFKPIDRLKLHHHLRPA-LFI 365
Query: 331 --AEPGNSRATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTP----NVSEKINI 384
E S ++ +AL E N A+ + + R+ V ++ + S+
Sbjct: 366 YPEEEQISGSSCMFTALLLKCCEKNVFALCKYIPRRNTPPRFVALVPQREELDQSQTQAT 425
Query: 385 PDSFYFNVLPFAEDVREFQFPSFSKFPVSWQPNEQQQEAADNLVKMLDLAPSGKGEILQP 444
P F+ LPFA+D+R P P + +++Q + +V L +
Sbjct: 426 PPGFHVIYLPFADDIRTVD-PHVG--PTA---SDEQVDKMKEIVHKLRFK-------YRS 472
Query: 445 ELTPNPALERFYHHLELKSEHQDAAPPPLDD-SLKKITEPDPTLLAESQSAIDAFCGQFV 503
+ NP L++ Y +LE + +P P++D ++ K+ D L Q D +
Sbjct: 473 DAFENPVLQQHYSNLEALALDM-LSPEPIEDLTMPKVKMMDDRLGPLVQEFKDLV---YP 528
Query: 504 IKENPKLKKSTRRFLREKPSGSDEPNGDGSVSDAQ 538
NP+ K + +R E G+ E +S+ +
Sbjct: 529 RDYNPEGKPAAKRKPAESGGGAAEKKAKVEISEEE 563
Score = 73 (30.8 bits), Expect = 9.3e-05, Sum P(2) = 9.3e-05
Identities = 31/120 (25%), Positives = 53/120 (44%)
Query: 5 REALLLLLDVSPSM----HSVLP---DVEKLCSRLIQ-KKLIYGKNHEVGVILFGTEETE 56
R++L+ L+D S M + P D+ C R + K+I V ++ +GTE+++
Sbjct: 31 RDSLVFLVDASKEMFIKGENGEPSNFDMTMQCVRSVYTSKIISSDRDLVALVFYGTEQSK 90
Query: 57 NELTKEVGGYEHVKVLQDIKVVDGHLVQSLKHLPQGTCAGDYM-LIKKYGETYKGKKHLC 115
N ++HV V D++ VQ + L +G G + GET G+ C
Sbjct: 91 NPRNS----FKHVYVYHDLESPGAKRVQDIDKL-KGDKGGQFAEKTMGSGETSLGEALWC 145
>FB|FBgn0041627 [details] [associations]
symbol:Ku80 "Ku80" species:7227 "Drosophila melanogaster"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0017117 "single-stranded DNA-dependent ATP-dependent DNA
helicase complex" evidence=ISS] [GO:0017116 "single-stranded
DNA-dependent ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0043564 "Ku70:Ku80 complex" evidence=IEA] [GO:0042162
"telomeric DNA binding" evidence=IEA] [GO:0000723 "telomere
maintenance" evidence=IMP] InterPro:IPR005160 InterPro:IPR006164
InterPro:IPR014893 InterPro:IPR024193 Pfam:PF02735 Pfam:PF08785
PIRSF:PIRSF016570 SMART:SM00559 GO:GO:0003677 GO:GO:0006310
GO:GO:0004003 GO:GO:0000723 GO:GO:0005958 GO:GO:0006303
Gene3D:1.10.1600.10 Gene3D:2.40.290.10 InterPro:IPR005161
InterPro:IPR016194 Pfam:PF03731 SUPFAM:SSF100939 Gene3D:1.25.40.240
SUPFAM:SSF101420 EMBL:AY118697 ProteinModelPortal:Q8MSM8 SMR:Q8MSM8
PRIDE:Q8MSM8 FlyBase:FBgn0041627 InParanoid:Q8MSM8
OrthoDB:EOG4MGQP9 ArrayExpress:Q8MSM8 Bgee:Q8MSM8 Uniprot:Q8MSM8
Length = 699
Score = 120 (47.3 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 85/401 (21%), Positives = 158/401 (39%)
Query: 269 SKVVP-PEQRIKGYRYGPQVVPISSAEWEAVKFKPEKSVKLLGFTDASNILRHYYM-KDV 326
+++ P PE I GY G VP A E + P + GF + + Y+ + +
Sbjct: 274 TEITPLPENLITGYMLGGTPVPYDEAVLEPKEPHPP-GLHFFGFIKRNAVPDEYFCGESL 332
Query: 327 NLFIAEPGNSRATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPNVSEKINIPD 386
L + + N A V + AL RA+ ++ + ++ + VL P +++ + P
Sbjct: 333 YLLVHQKHNQSAAVKLDALVRALVSSDRAILCWKIYSTKFNRPQMVVLLPRLADDTH-PA 391
Query: 387 SFYFNVLPFAEDVREFQFPSFSKFPVSWQPNEQQQEAADNLVKMLDLAPSGKGEILQP-- 444
+ Y + + + FP+ + +E+Q A D L+ DL + + + QP
Sbjct: 392 TLYMLEVSYTSQHHFWDFPALRT--TKTECSEEQLNAIDQLIDSTDLECTLR-DTQQPRP 448
Query: 445 ----ELTPNPALERFYHH-----LELKSEHQDAAPPPL--DDSLKKI--TEPDPTLLAES 491
+L P AL + LE K + + + D + + PDP L E
Sbjct: 449 WAQNDLLPFDALPSIFEQNVMDILERKVIYDNDKEDKMLKDKNFADVFWRVPDP--LEEK 506
Query: 492 QSAIDAFCGQFVIKENPKLKKSTRRFLREKPSGSDEPNGDGSVSDAQAVNSMESKPVVTV 551
A ++K+ L+ S R +EK ++ +V A + P+ +
Sbjct: 507 SKRAAA-----IVKKLFPLRYS--RAWQEKLLAKEQAENGVAVKSEPAEKEI---PMPS- 555
Query: 552 DKIGDLTPIQDFEAMMS---------RRDCPDWVDKAIEDMKNKIFGLLENSNEGINYPK 602
D +G + P+ DF +++ RD D + I LL+ + I +
Sbjct: 556 DGVGLIDPVSDFRRVLASVHTISNATERDAR--FQTLAADTRVVIITLLQRRKQNIG--Q 611
Query: 603 AVELLVALRKGCILEQEPKQFNDVLEKVCKICRKRNFSTFF 643
EL+ R+ CI +++ E++ KI +N S F+
Sbjct: 612 LGELITLYRQSCIDFNTFLEYDKFAEELKKIALAKNRSEFW 652
Score = 57 (25.1 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 16/61 (26%), Positives = 31/61 (50%)
Query: 1 MARTREALLLLLDVSP-SMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFG--TEETEN 57
MA +E L+++LDV + V K + +++ K++ + V +L G T+E +
Sbjct: 1 MASNKECLIIVLDVRTCAAEEVKLKSAKCVAEILKDKIVCDRKDYVSFVLVGCDTDEIKT 60
Query: 58 E 58
E
Sbjct: 61 E 61
>UNIPROTKB|F1NII5 [details] [associations]
symbol:XRCC6 "X-ray repair cross-complementing protein 5"
species:9031 "Gallus gallus" [GO:0000723 "telomere maintenance"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043564 "Ku70:Ku80 complex" evidence=IEA]
InterPro:IPR003034 InterPro:IPR005160 InterPro:IPR006164
InterPro:IPR006165 Pfam:PF02037 Pfam:PF02735 Pfam:PF03730
PIRSF:PIRSF003033 PROSITE:PS50800 SMART:SM00513 SMART:SM00559
GO:GO:0003677 Gene3D:1.10.720.30 GO:GO:0004003 GO:GO:0005958
GO:GO:0006303 Gene3D:1.10.1600.10 Gene3D:2.40.290.10
InterPro:IPR005161 InterPro:IPR016194 PANTHER:PTHR12604:SF2
Pfam:PF03731 SUPFAM:SSF100939 TIGRFAMs:TIGR00578
GeneTree:ENSGT00390000001422 EMBL:AADN02006063 EMBL:AADN02006064
IPI:IPI00600583 Ensembl:ENSGALT00000019462 ArrayExpress:F1NII5
Uniprot:F1NII5
Length = 620
Score = 109 (43.4 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 38/164 (23%), Positives = 73/164 (44%)
Query: 269 SKVVPPEQRIKGYRYGPQVVPISSAEWEAVKFKPEKSVKLLGFTDASNILRHYYMKDVNL 328
S ++P + + + YG + + + E E VK + L+GF S + +H++++
Sbjct: 320 SLLLPSDTK-RAQTYGNRQIAMEKEETEEVKRFDSPGLFLIGFKPLSMLKQHHHIRPSQF 378
Query: 329 FIAEPGN-SRATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPN--VSE-KINI 384
E + +T +AL E +A+ R + R+ +V ++ V E K+ I
Sbjct: 379 MYPEESLVTGSTTLFNALLMKCLEKEVMALCRYIARRNTPPRIVALIPQEEEVDEQKVQI 438
Query: 385 -PDSFYFNVLPFAEDVREFQFPSFSKFPVSWQPNEQQQEAADNL 427
P F+ LP+A+D R F K P + + ++ +E L
Sbjct: 439 APPGFHIIFLPYADDKRNVDFTE--KVPANREQVDKMKEIIQKL 480
Score = 67 (28.6 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 22/80 (27%), Positives = 39/80 (48%)
Query: 5 REALLLLLDVSPSM-------HSVLP-DVEKLCSRLIQ-KKLIYGKNHEVGVILFGTEET 55
R++L+ L+D S +M + P D+ C R + K+I + V+ +GTE
Sbjct: 45 RDSLIFLVDASKAMFEPYEDEEAATPFDMTMQCIRNVYTSKIISSDKDLLSVVFYGTENN 104
Query: 56 ENELTKEVGGYEHVKVLQDI 75
+N ++HV VLQ++
Sbjct: 105 KNS-----ADFKHVYVLQEL 119
>UNIPROTKB|F1MMD5 [details] [associations]
symbol:XRCC6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070419 "nonhomologous end joining complex"
evidence=IEA] [GO:0051575 "5'-deoxyribose-5-phosphate lyase
activity" evidence=IEA] [GO:0050769 "positive regulation of
neurogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0043564 "Ku70:Ku80 complex"
evidence=IEA] [GO:0033151 "V(D)J recombination" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0003691
"double-stranded telomeric DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] [GO:0000723 "telomere
maintenance" evidence=IEA] InterPro:IPR003034 InterPro:IPR005160
InterPro:IPR006164 InterPro:IPR006165 Pfam:PF02037 Pfam:PF02735
Pfam:PF03730 PIRSF:PIRSF003033 PROSITE:PS50800 SMART:SM00513
SMART:SM00559 GO:GO:0005737 GO:GO:0045892 GO:GO:0045944
GO:GO:0010212 GO:GO:0005667 GO:GO:0044212 GO:GO:0050769
Gene3D:1.10.720.30 GO:GO:0004003 GO:GO:0005958 GO:GO:0006303
GO:GO:0033151 GO:GO:0051575 KO:K10884 OMA:RTFNVNT
Gene3D:1.10.1600.10 Gene3D:2.40.290.10 InterPro:IPR005161
InterPro:IPR016194 PANTHER:PTHR12604:SF2 Pfam:PF03731
SUPFAM:SSF100939 TIGRFAMs:TIGR00578 GeneTree:ENSGT00390000001422
GO:GO:0043564 GO:GO:0003691 CTD:2547 EMBL:DAAA02014736
EMBL:DAAA02014735 IPI:IPI00700355 RefSeq:NP_001179175.1
UniGene:Bt.8019 Ensembl:ENSBTAT00000008020 GeneID:510132
KEGG:bta:510132 NextBio:20869291 Uniprot:F1MMD5
Length = 612
Score = 126 (49.4 bits), Expect = 0.00022, P = 0.00022
Identities = 131/612 (21%), Positives = 246/612 (40%)
Query: 5 REALLLLLDVSPSMHS------VLP-DVEKLCSRLIQKKLIYGKNHEV-GVILFGTEETE 56
R++L+ L+D S +M + P D+ C R + I N ++ V+ +GT++ +
Sbjct: 38 RDSLIFLVDASRAMFESQDEDELTPFDMSIQCIRSVYTNKIISSNRDLLAVVFYGTKKDK 97
Query: 57 NELTKEVGGYEHVKVLQDIKVVDGHLVQSLKHLPQGTCAGDYMLIK-KYGETYKGKKHL- 114
N + ++++ VLQ++ VQ L +G Y + +G Y + L
Sbjct: 98 NSVN-----FKNIYVLQELDNPGVKRVQELDKF-KGQEGKKYFEDQIGHGSDYSLSEVLW 151
Query: 115 -C--LITDALCPLK-----------DP--DVGTKEDQVSTIARQMVAFG--LRMKNIVVR 156
C L +D + DP D K + T A + G L + ++ R
Sbjct: 152 VCANLFSDVQFKMSHKRIMLFTNEDDPHGDDSAKASRARTKAGDLRDTGIFLDLMHLKKR 211
Query: 157 ASLSGEPHMR--VIIENDNLLNIFSKKSSAKTLFVDSTTSLRGARKTRDISPVTIFRGDL 214
R +I EN+++ F + S + L +R A++TR + R L
Sbjct: 212 GGFDTSLFYRDVIIAENEDIGIHFEESSKLEDLL----RKVR-AKETRKR---VLSRLKL 263
Query: 215 ELSEKMKIKVWVYKKTGEE-KFPTLKKYSDKAPSTDKFATHE-VKVDYEYKSVEDPSKVV 272
+L++ + + V +Y + + P ++ Y + T+E VK +V S ++
Sbjct: 264 KLNKDVTLTVGIYNMVQKAYRPPPVRLYRE---------TNEPVKTKTRTFNVNTGSLLL 314
Query: 273 PPEQRIKGYRYGPQVVPISSAEWEAVKFKPEKSVKLLGFTDASNILRHYYMKDVNLFI-A 331
P + + + Y + + + E E +K E L+GF + +H+Y++ +LF+
Sbjct: 315 PSDTK-RSQTYSHRQIVLEKEETEELKRFDEPGFILIGFKPLMMLKKHHYLRH-SLFVYP 372
Query: 332 EPG--NSRATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPNVSE----KINI- 384
E N +T+ SAL E +A+ R R+ V L P E KI +
Sbjct: 373 EESLINGSSTL-FSALLTKCLEKEVMAVCRYTPRRNSPPCFVA-LVPQEEELDDQKIQVA 430
Query: 385 PDSFYFNVLPFAEDVREFQFPSFSKFPVSWQPNEQQQEAADNLVKMLDLAPSGKGEILQP 444
P F LP+A+D R+ F N +Q + +V+ L +
Sbjct: 431 PPGFQLVFLPYADDKRKVPFTE------KVMANPEQVDKMKAIVQKLRFK-------YRS 477
Query: 445 ELTPNPALERFYHHLELKSEHQDAAPPPLDDSLKKITEPDPTLLAESQSAIDAFCGQFVI 504
+ NP L++ + ++E + +D +L K D L S +D F + V
Sbjct: 478 DSFENPVLQQHFRNMEALALDLMEPEQAVDLTLPKTEVMDKRL----GSLVDEF-KELVY 532
Query: 505 KE--NPKLKKSTRRFLREKPSGSDEPNGDGSVSDAQAVNSMESKPVVTVDKIGDLTPIQD 562
NP+ K T+R ++ GS P + S + +A S + +TV + + +
Sbjct: 533 PPDYNPE-GKVTKRKKDDESYGSKRPKVELSEEELKAHVSKGTLGKLTVPALKEACRMYG 591
Query: 563 FEAMMSRRDCPD 574
+ + +++ D
Sbjct: 592 LKGGLKKQELLD 603
>UNIPROTKB|O93257 [details] [associations]
symbol:XRCC6 "X-ray repair cross-complementing protein 5"
species:9031 "Gallus gallus" [GO:0000723 "telomere maintenance"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0043564
"Ku70:Ku80 complex" evidence=ISS] [GO:0006303 "double-strand break
repair via nonhomologous end joining" evidence=ISS;TAS] [GO:0051575
"5'-deoxyribose-5-phosphate lyase activity" evidence=ISS]
[GO:0070419 "nonhomologous end joining complex" evidence=ISS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281
"DNA repair" evidence=TAS] [GO:0006302 "double-strand break repair"
evidence=TAS] InterPro:IPR003034 InterPro:IPR005160
InterPro:IPR006164 InterPro:IPR006165 Pfam:PF02037 Pfam:PF02735
Pfam:PF03730 PIRSF:PIRSF003033 PROSITE:PS50800 SMART:SM00513
SMART:SM00559 GO:GO:0005524 GO:GO:0045892 GO:GO:0005694
GO:GO:0005654 GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.720.30
GO:GO:0006310 GO:GO:0004003 GO:GO:0005958 GO:GO:0006303
Reactome:REACT_115612 GO:GO:0070419 GO:GO:0051575 eggNOG:NOG305318
KO:K10884 Gene3D:1.10.1600.10 Gene3D:2.40.290.10 InterPro:IPR005161
InterPro:IPR016194 PANTHER:PTHR12604:SF2 Pfam:PF03731
SUPFAM:SSF100939 TIGRFAMs:TIGR00578 GO:GO:0043564 EMBL:AB016529
IPI:IPI00819602 RefSeq:NP_990258.1 UniGene:Gga.26690
ProteinModelPortal:O93257 SMR:O93257 STRING:O93257 PRIDE:O93257
GeneID:395767 KEGG:gga:395767 CTD:2547 HOGENOM:HOG000006588
HOVERGEN:HBG006236 InParanoid:O93257 OrthoDB:EOG451DQB
NextBio:20815835 Uniprot:O93257
Length = 632
Score = 110 (43.8 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 44/197 (22%), Positives = 85/197 (43%)
Query: 269 SKVVPPEQRIKGYRYGPQVVPISSAEWEAVKFKPEKSVKLLGFTDASNILRHYYMKDVNL 328
S ++P + + + YG + + + E E VK + L+GF S + +H++++
Sbjct: 331 SLLLPSDTK-RAQTYGNRQIAMEKEETEEVKRFDSPGLFLIGFKPLSMLKQHHHIRPSQF 389
Query: 329 FIAEPGN-SRATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPN--VSE-KINI 384
E + +T +AL E +A+ R + R+ +V ++ V E K+ I
Sbjct: 390 MYPEESLVTGSTTLFNALLMKCLEKEVMALCRYIARRNTPPRIVALIPQEEEVDEQKVQI 449
Query: 385 -PDSFYFNVLPFAEDVREFQFPSFSKFPVSWQPNEQQQEAADNLVKMLDLAPSGKGEILQ 443
P F+ LP+A+D R F K P N +Q + +++ L +
Sbjct: 450 APPGFHIIFLPYADDKRNVDFTE--KVPA----NREQVDKMKGIIQKLRFK-------YR 496
Query: 444 PELTPNPALERFYHHLE 460
+ NP L++ + +LE
Sbjct: 497 TDSFENPVLQQHFRNLE 513
Score = 60 (26.2 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 20/80 (25%), Positives = 38/80 (47%)
Query: 5 REALLLLLDVSPSM-------HSVLP-DVEKLCSRLIQ-KKLIYGKNHEVGVILFGTEET 55
R++L+ L+D S +M + P D+ C R + K+I + V+ +G E
Sbjct: 56 RDSLIFLVDASKAMFEPYENEEAATPFDMTMQCIRNVYTSKIISSDKDLLSVVFYGMENN 115
Query: 56 ENELTKEVGGYEHVKVLQDI 75
+N ++H+ VLQ++
Sbjct: 116 KNS-----ADFKHIYVLQEL 130
>UNIPROTKB|F1SRE0 [details] [associations]
symbol:XRCC6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070419 "nonhomologous end joining complex"
evidence=IEA] [GO:0051575 "5'-deoxyribose-5-phosphate lyase
activity" evidence=IEA] [GO:0050769 "positive regulation of
neurogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0043564 "Ku70:Ku80 complex"
evidence=IEA] [GO:0033151 "V(D)J recombination" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0003691
"double-stranded telomeric DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] [GO:0000723 "telomere
maintenance" evidence=IEA] InterPro:IPR002035 InterPro:IPR003034
InterPro:IPR005160 InterPro:IPR006164 InterPro:IPR006165
Pfam:PF02735 Pfam:PF03730 PIRSF:PIRSF003033 SMART:SM00327
SMART:SM00513 SMART:SM00559 GO:GO:0005737 GO:GO:0045892
GO:GO:0045944 GO:GO:0010212 GO:GO:0005667 GO:GO:0044212
GO:GO:0050769 Gene3D:1.10.720.30 GO:GO:0004003 GO:GO:0005958
GO:GO:0006303 GO:GO:0033151 GO:GO:0051575 OMA:RTFNVNT
Gene3D:1.10.1600.10 Gene3D:2.40.290.10 InterPro:IPR005161
InterPro:IPR016194 PANTHER:PTHR12604:SF2 Pfam:PF03731
SUPFAM:SSF100939 TIGRFAMs:TIGR00578 GeneTree:ENSGT00390000001422
GO:GO:0043564 GO:GO:0003691 EMBL:CU633382
Ensembl:ENSSSCT00000000065 Uniprot:F1SRE0
Length = 606
Score = 110 (43.8 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 53/221 (23%), Positives = 101/221 (45%)
Query: 195 LRGARKTRDISPVTIFRGDLELSEKMKIKVWVYK--KTGEEKFPTLKKYSDKAPSTDKFA 252
LR R ++ + R L+LS+ + + V +Y + + FP ++ Y +
Sbjct: 241 LRKVR-AKETRKRVLHRLKLKLSKDVALTVGIYNLVQKAYKPFP-VRLYRE--------- 289
Query: 253 THE-VKVDYEYKSVEDPSKVVPPEQRIKGYRYGPQVVPISSAEWEAVKFKPEKSVKLLGF 311
T+E VK +V S ++P + + + YG + + + E E ++F E + L+GF
Sbjct: 290 TNEPVKTKTRTFNVNTGSLLLPSDTK-RSQTYGNRQIVLEKEETEMLRFD-EPGLILIGF 347
Query: 312 TDASNILRHYYMKDVNLFI-AEPG--NSRATVAVSALARAMKEMNKVAIVRCVWRQGQQS 368
+ RH+Y++ +LF+ E N +T+ + L + + E +A+ R R+
Sbjct: 348 KPLGMLKRHHYVRP-SLFVYPEESLVNGSSTLFTALLTKCL-EKEVMAVCRYTPRKNLPP 405
Query: 369 VVVGVLTPNVSE----KINI-PDSFYFNVLPFAEDVREFQF 404
V ++ P E K+ + P F LP+A+D R+ F
Sbjct: 406 YFVALM-PQEEELDDQKVQVTPPGFQLVFLPYADDKRKVPF 445
Score = 57 (25.1 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 21/90 (23%), Positives = 44/90 (48%)
Query: 5 REALLLLLDVSPSMHS------VLP-DVEKLCSRLIQ-KKLIYGKNHEVGVILFGTEETE 56
R++L+ L+D S +M + P D+ C + + K+I + V+ +GT++ +
Sbjct: 33 RDSLIFLVDASRAMFESQDEDELTPFDMSIQCIQSVYTNKIISSDRDLLAVVFYGTKKDK 92
Query: 57 NELTKEVGGYEHVKVLQDIKVVDGHLVQSL 86
N + ++++ VLQ++ VQ L
Sbjct: 93 NSVN-----FKNIYVLQELDSPGAKRVQEL 117
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.134 0.385 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 682 670 0.00099 120 3 11 22 0.43 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 24
No. of states in DFA: 621 (66 KB)
Total size of DFA: 348 KB (2175 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 63.76u 0.11s 63.87t Elapsed: 00:00:03
Total cpu time: 63.77u 0.11s 63.88t Elapsed: 00:00:03
Start: Thu May 9 21:14:35 2013 End: Thu May 9 21:14:38 2013