BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005694
(682 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FQ09|KU80_ARATH ATP-dependent DNA helicase 2 subunit KU80 OS=Arabidopsis thaliana
GN=KU80 PE=1 SV=1
Length = 680
Score = 853 bits (2203), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/687 (60%), Positives = 529/687 (77%), Gaps = 22/687 (3%)
Query: 1 MARTREALLLLLDVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELT 60
MAR RE L+L+LDV P+M SVLPDVEK CS L+QKKLIY K EVG+++FGTEET NEL
Sbjct: 1 MARNREGLVLVLDVGPAMRSVLPDVEKACSMLLQKKLIYNKYDEVGIVVFGTEETGNELA 60
Query: 61 KEVGGYEHVKVLQDIKVVDGHLVQSLKHLPQGTCAGDY---------MLIKKYGETYKGK 111
+E+GGYE+V VL++I+VVD + +K LP+GT AGD+ MLIK YG +KGK
Sbjct: 61 REIGGYENVTVLRNIRVVDELAAEHVKQLPRGTVAGDFLDALIVGMDMLIKMYGNAHKGK 120
Query: 112 KHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKNIVVRASLSGEPHMRVIIEN 171
K +CLIT+A CP KDP GTK+DQVSTIA +M A G++M++IV+R++LSG+ H RVI EN
Sbjct: 121 KRMCLITNAACPTKDPFEGTKDDQVSTIAMKMAAEGIKMESIVMRSNLSGDAHERVIEEN 180
Query: 172 DNLLNIFSKKSSAKTLFVDSTTSLRGARKTRDISPVTIFRGDLELSEKMKIKVWVYKKTG 231
D+LL +FS + AKT+ VDS SL G+ KTR ++PVT+FRGDLE++ MKIKVWVYKK
Sbjct: 181 DHLLTLFSSNAIAKTVNVDSPLSLLGSLKTRRVAPVTLFRGDLEINPTMKIKVWVYKKVA 240
Query: 232 EEKFPTLKKYSDKAPSTDKFATHEVKVDYEYKSVEDPSKVVPPEQRIKGYRYGPQVVPIS 291
EE+ PTLK YSDKAP TDKFA HEVKVDY+YK + ++V+ PE+RIKG+RYGPQV+PIS
Sbjct: 241 EERLPTLKMYSDKAPPTDKFAKHEVKVDYDYKVTAESTEVIAPEERIKGFRYGPQVIPIS 300
Query: 292 SAEWEAVKFKPEKSVKLLGFTDASNILRHYYMKDVNLFIAEPGNSRATVAVSALARAMKE 351
+ E +KFK +K +KLLGFT+ASNILRHYYMKDVN+ + +P ++ +AVSA+AR MKE
Sbjct: 301 PDQIETLKFKTDKGMKLLGFTEASNILRHYYMKDVNIVVPDPSKEKSVLAVSAIAREMKE 360
Query: 352 MNKVAIVRCVWRQGQQSVVVGVLTPNVSEKINIPDSFYFNVLPFAEDVREFQFPSFSKFP 411
NKVAIVRCVWR GQ +VVVGVLTPNVSE+ + PDSFYFNVLPFAEDVREF FPSF+K P
Sbjct: 361 TNKVAIVRCVWRNGQGNVVVGVLTPNVSERDDTPDSFYFNVLPFAEDVREFPFPSFNKLP 420
Query: 412 VSWQPNEQQQEAADNLVKMLDLAPSGKGEILQPELTPNPALERFYHHLELKSEHQDAAPP 471
SW+P+EQQQ ADNLVKMLDLAPS + E+L+P+LTPNP L+RFY +LELKS+ DA P
Sbjct: 421 SSWKPDEQQQAVADNLVKMLDLAPSAEEEVLKPDLTPNPVLQRFYEYLELKSKSTDATLP 480
Query: 472 PLDDSLKKITEPDPTLLAESQSAIDAFCGQFVIKENPKLKKSTRRFLREKPSGSDEPNGD 531
P+D + K++ E DP L + ++S +D F G F +KENPKLKK+++R LR+KPSGSD+ +
Sbjct: 481 PMDGTFKRLMEQDPELSSNNKSIMDTFRGSFEVKENPKLKKASKRLLRDKPSGSDDEDNR 540
Query: 532 GSVSDAQAVNSMESKPVVTVDKIGDLTPIQDFEAMMSRRDCPDWVDKAIEDMKNKIFGLL 591
DA+ E+K +D +GD PIQDFEAM+SRRD DW +KAI MKN I L+
Sbjct: 541 MITYDAK-----ENK----IDIVGDANPIQDFEAMISRRDKTDWTEKAITQMKNLIMKLV 591
Query: 592 EN-SNEGINYPKAVELLVALRKGCILEQEPKQFNDVLEKVCKICRKRNFSTFFDFLMSKK 650
EN ++EG KA+E ++ALRKGC+LEQEPKQFN+ L + K+C++RN S + MSKK
Sbjct: 592 ENCTDEG---DKALECVLALRKGCVLEQEPKQFNEFLNHLFKLCQERNLSHLLEHFMSKK 648
Query: 651 LSLISKSEAVDSDITDDEAGSFIVKSQ 677
++LI KSEA DSDI D+ AG FIVK +
Sbjct: 649 ITLIPKSEAADSDIVDENAGDFIVKQE 675
>sp|Q75IP6|KU80_ORYSJ ATP-dependent DNA helicase 2 subunit KU80 OS=Oryza sativa subsp.
japonica GN=KU80 PE=1 SV=1
Length = 688
Score = 770 bits (1989), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/692 (58%), Positives = 499/692 (72%), Gaps = 15/692 (2%)
Query: 1 MARTREALLLLLDVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELT 60
MAR +EAL+LLLDV PSMH VL +VE +CS L+ KKL+Y ++ E+GV+LFGT+ET NEL
Sbjct: 1 MARNKEALVLLLDVGPSMHGVLQEVENICSTLVHKKLVYNRSDEIGVVLFGTKETSNELA 60
Query: 61 KEVGGYEHVKVLQDIKVVDGHLVQSLKHLPQGTCAGDY---------MLIKKYGETYKGK 111
KE+GGY+HV V +DIKVVD +L++LP+GT GD+ MLI+K+G KGK
Sbjct: 61 KELGGYKHVVVARDIKVVDEETTNALQNLPRGTSPGDFLDAIVVGLDMLIRKFG-NIKGK 119
Query: 112 KHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKNIVVRASLSGEPHMRVIIEN 171
+ +CL+TDA PL+DP GTK+DQV TIA QM ++M I+ R S G H V+ EN
Sbjct: 120 QRMCLVTDAQHPLRDPPQGTKKDQVDTIADQMKRHEIKMDCIIFRES--GVRHNAVMDEN 177
Query: 172 DNLLNIFSKKSSAKTLFVDSTTSLRGARKTRDISPVTIFRGDLELSEKMKIKVWVYKKTG 231
D LL F ++S K + VDS TSL GA +TR++ PVT+FRGDLE+S KIKVWVYKKT
Sbjct: 178 DQLLYHFRERSVTKVVHVDSPTSLLGALRTRNVLPVTVFRGDLEVSSSFKIKVWVYKKTS 237
Query: 232 EEKFPTLKKYSDKAPSTDKFATHEVKVDYEYKSVEDPSKVVPPEQRIKGYRYGPQVVPIS 291
EEKFPTLKKYSDKAP++DKFA+HEVKVDYEYKSV +P VVPP+QRIKGY YGPQVVPIS
Sbjct: 238 EEKFPTLKKYSDKAPASDKFASHEVKVDYEYKSVLEPDTVVPPDQRIKGYLYGPQVVPIS 297
Query: 292 SAEWEAVKFKPEKSVKLLGFTDASNILRHYYMKDVNLFIAEPGNSRATVAVSALARAMKE 351
SAEWEAVKFKPEK VKLLGFTD S+I RHY+MKDV F+ EPGN++A AVSALARAM E
Sbjct: 298 SAEWEAVKFKPEKGVKLLGFTDRSSISRHYFMKDVFSFVPEPGNTKAVAAVSALARAMSE 357
Query: 352 MNKVAIVRCVWRQGQQSVVVGVLTPNVSEKINIPDSFYFNVLPFAEDVREFQFPSFSKFP 411
MNKVAI+RCVWRQGQ +V +GVLTPN+S N+ DSFYFN+LPFAED+REFQF SFS P
Sbjct: 358 MNKVAILRCVWRQGQGNVALGVLTPNISSAKNVLDSFYFNILPFAEDIREFQFRSFSSLP 417
Query: 412 VSWQPNEQQQEAADNLVKMLDLAPSGKGEILQPELTPNPALERFYHHLELKSEHQDAAPP 471
S QP ++QQEAADNLVKMLDLAP G+ EIL+P+ TPNP LERFY +L+LKS+ DA P
Sbjct: 418 SSSQPTKEQQEAADNLVKMLDLAPPGREEILKPDFTPNPMLERFYRYLDLKSKQPDANVP 477
Query: 472 PLDDSLKKITEPDPTLLAESQSAIDAFCGQFVIKENPKLKKSTRRFLREKPSGSDEPNGD 531
PLD LKKITEPDP ++ I F +KENPK KK R R +G+D+
Sbjct: 478 PLDKCLKKITEPDPDVIDYQAPLIKKLGNVFELKENPK-KKKARTQDRLTYTGADDQAKL 536
Query: 532 GSVSDAQAVNSMES--KPVVTVDKIGDLTPIQDFEAMMSRRDCPDWVDKAIEDMKNKIFG 589
A+ V E+ P +IGD P+QDFEAM+++R WV AIE+M+ I
Sbjct: 537 LEEPSAEKVGVSEALYPPKKKAGEIGDHNPVQDFEAMLTQRSSSTWVQTAIEEMQKYITA 596
Query: 590 LLENSNEGINYPKAVELLVALRKGCILEQEPKQFNDVLEKVCKICRKRNFSTFFDFLMSK 649
L+++S + N+ KA+E LVALRK CI+EQEP ++N + K+C+ R F L SK
Sbjct: 597 LIQDSCDRDNHQKALECLVALRKACIIEQEPNEYNGFVTKLCQKFRPAGDKIFLQLLSSK 656
Query: 650 KLSLISKSEAVDSDITDDEAGSFIVKSQPKHE 681
K SLISK EA DSD+T++ A +F +K +P +
Sbjct: 657 KASLISKEEAPDSDVTEEMARNFCLKPEPSSQ 688
>sp|Q54LY5|XRCC5_DICDI X-ray repair cross-complementing protein 5 OS=Dictyostelium
discoideum GN=ku80 PE=3 SV=1
Length = 796
Score = 263 bits (672), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 207/772 (26%), Positives = 366/772 (47%), Gaps = 110/772 (14%)
Query: 5 REALLLLLDVSPSMHS-----------VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTE 53
+EA++++LD+ M S + D + + L Q+KLIYGK ++G++L GT+
Sbjct: 8 KEAVVVILDIGLGMTSKDSDGTTTTTSSIEDALRSVTLLYQQKLIYGKKDQLGLVLIGTK 67
Query: 54 ETENELTKEVGGYEHVKVLQDIKVVDGHLVQSLKHLPQGTCAGDY---------MLIKKY 104
T+N L + GY+H+ V+ DI+ ++ L++L G GD MLI+K
Sbjct: 68 GTKNNLQDD--GYQHITVVSDIEEPSIETLKYLENLAPGESKGDVIDSLIVAMDMLIRK- 124
Query: 105 GETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKNIVVRASL---SG 161
E K +K + L+T+A P+ D+ DQ I ++ G+ + ++ +
Sbjct: 125 TENKKYQKRIFLVTNARDPINTEDLSIVRDQFKKIDVKLNIIGVDFLEEIEENNMDTSNN 184
Query: 162 EPHMRVIIENDNLLNIFSKKSSAKTLFVDSTTSLRGARKTRDISPVTIFRGDLELSEKMK 221
+ + +N+ L F++ + V + +++ + T FRG LE++ ++K
Sbjct: 185 NKNKSLKEKNEIFLREFAESVDGVLVPVKQALEMMSFFRSQSVMTRTSFRGALEITPELK 244
Query: 222 IKVWVYKKTGEEKFPTLKKYSDKAPSTDKFA--------------------------THE 255
I VW Y K ++ P+LKK S A + T +
Sbjct: 245 IPVWGYLKMKQQLLPSLKKISSIAQQQIEQQQQQQQQQNKNKNNEDNEDNEEGKPNITLD 304
Query: 256 VKVDYEYKSVEDPSKVVPPEQRIKGYRYGPQVVPISSAEWEAVKFKPEKSVKLLGFTDAS 315
V + Y S+ DP + +KGY+YG ++P S + + +K+ K +K++GFTD
Sbjct: 305 VNQEVSYYSITDPDNEILKPDLLKGYKYGKSLIPFSKIDEDQLKYSSSKCLKVVGFTDRK 364
Query: 316 NILRHYYMKDVNLFIAEPGNSRATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLT 375
+I +Y M + +F+++PG+ ++ A+S+ A+ E ++V +VR V + S +G +
Sbjct: 365 SIPIYYNMGNTEVFVSQPGDKQSEEALSSFIHALVETDQVMVVRYV-KTMNGSPYLGYMI 423
Query: 376 PNV-SEKINIPDSFYFNVLPFAEDVREFQFPSFS-KFPVSWQ---PNEQQQEAADNLVKM 430
P+V S+ + Y+N LP A+D+R++QFP S K P++ + PN +Q EA L+
Sbjct: 424 PHVKSDYV----CLYYNHLPLADDIRQYQFPPISPKNPLTRKSNIPNAEQLEATQQLIDS 479
Query: 431 LDLAPSGKGE------ILQPELTPNPALERFYHHLELKSEHQDAAPPPLDDSLKKITEPD 484
+DL S E +L+P T NP L+ FY L +S H + P LD + + PD
Sbjct: 480 MDLMKSEFDEDGDPIQMLKPRFTYNPLLQHFYQCLHHRSLHPNTQIPKLDPIIAEYINPD 539
Query: 485 PTLLAESQSAIDAFCGQF------VIKENPKLKKSTRR---------------------- 516
++ +S+ +I F +F V + P +
Sbjct: 540 QIIMNKSKQSIKNFADKFPLTKTTVFSKTPAISGGNTNGTTSNTNNTMIGGVKYHWKDGM 599
Query: 517 FLREKPSGSDEPNGDGSVSDAQAVN-----SMESKPVVTVDKIGDLTPIQDFEAMMSRRD 571
+ E+ + DGS + + VN S++ V ++G + P+Q+F+ M++RRD
Sbjct: 600 LIGEEINLDSYVTDDGSEAKKRKVNDFSEFSLDKLVSGYVTEVGTINPVQNFKDMLNRRD 659
Query: 572 CPDWVDKAIEDMKNKIFGLLENSNEGINYPKAVELLVALRKGCILEQEPKQFNDVLEKVC 631
D VDKAI MK +I L+ +S Y KA E + LR GCI E E +QFN L+ +
Sbjct: 660 M-DLVDKAITLMKERILQLVNDSLRDQYYQKAFECIKELRVGCIRESEAEQFNGFLKDMR 718
Query: 632 KICRKRNFSTFFDFLMS--------KKLSLISKSEAVDSDITDDEAGSFIVK 675
+ + + F+ ++ + K ++LI++ E S++T +E F+ K
Sbjct: 719 SLFQSKKRDDFWQYITADVTSILGEKSINLITQDECDSSEVTQEELDQFLDK 770
>sp|P27641|XRCC5_MOUSE X-ray repair cross-complementing protein 5 OS=Mus musculus GN=Xrcc5
PE=2 SV=4
Length = 732
Score = 153 bits (387), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 168/734 (22%), Positives = 326/734 (44%), Gaps = 79/734 (10%)
Query: 4 TREALLLLLDVSPSMHSVLPDVE-------KLCSRLIQKKLIYGKNHEVGVILFGTEETE 56
+ A++L +DV +M + P E K+ + +Q+++ E+ ++L+GT+ T+
Sbjct: 6 NKAAVVLCVDVGVAMGNSFPGEESPIEQAKKVMTMFVQRQVFSESKDEIALVLYGTDGTD 65
Query: 57 NELTKEVGGYEHVKVLQDIKVVDGHLVQSLKHLPQ-GTCAGDYM--------LIKK--YG 105
N L + Y+++ V + + + D L++ + + Q + D++ LI++ G
Sbjct: 66 NALAGK-DQYQNITVCRHLMLPDFDLLEDIGNKIQPSSQQADFLDALIVCMDLIQRETIG 124
Query: 106 ETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKNIV-VRASLSGEPH 164
+ + GKKH+ + TD P +DQ+ I + G+ ++ + +GEP
Sbjct: 125 KKF-GKKHIEVFTDLSSPF-------SQDQLDVIICNLKKSGISLQFFLPFPIDKNGEPG 176
Query: 165 MRVIIEN--DNLLNIFSKKSSAKT------LFVDSTTSLRGARKTRDI-------SPVTI 209
R +++ D+L F +K + + SL G +I + +
Sbjct: 177 ERGDLDSGLDHLKPSFPQKGLTEQQKEGIRMVTRVMLSLEGEDGLDEIYSFSESLRQLCV 236
Query: 210 FR----------GDLELSEKMKIKVWVYKKTGEEKFPTLKKYSDKAPSTDKFATHEVKVD 259
F+ L + + IK+ YK +EKF K S +++ +
Sbjct: 237 FKKIERRSMPWPCQLTIGPNLSIKIVAYKSIVQEKF----KKSWVVVDARTLKKEDIQKE 292
Query: 260 YEYKSVEDPSKVVPPEQRIKGYRYGPQVVPISSAEWEAVKFKPE-KSVKLLGFTDASNIL 318
Y +D V E I+GYRYG ++P S + E +K+K E K +LGF +S +
Sbjct: 293 TVYCLNDDDETEVSKEDTIQGYRYGSDIIPFSKVDEEQMKYKSEGKCFSVLGFCKSSQVH 352
Query: 319 RHYYM-KDVNLFIAEPGNSRATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPN 377
R ++M V A + A VA+S+L A+ E+N VAIVR + + + + VGV P
Sbjct: 353 RRFFMGHQVLKVFAAKDDEAAAVALSSLVHALDELNMVAIVRYAYDK-RSNPQVGVAFPY 411
Query: 378 VSEKINIPDSFYFNVLPFAEDVREFQFPSFSKFPVSWQPNEQQQEAADNLVKMLDLAPSG 437
+ + + + LPF ED+R++ F S K P E Q A D+L+ + L
Sbjct: 412 IKDAY---ECLVYVQLPFMEDLRQYMFSSL-KNNKKCTPTEAQLSAIDDLIDSMSLVKKN 467
Query: 438 KGEILQPEL-----TPNPALERFYHHLELKSEHQDAAPPPLDDSLKKITEPDPTLLAESQ 492
+ E + +L PNP +R Y L ++ H PP+ + + +P + A+ +
Sbjct: 468 EEEDIVEDLFPTSKIPNPEFQRLYQCLLHRALHLQERLPPIQQHILNMLDPPTEMKAKCE 527
Query: 493 SAIDAFCGQFVIKENPKLKKSTRRFLREKPSGSDEPNGDGSVSDAQAVN-SMESKPVVTV 551
S + F + E K K + + + P ++ + + S+ S +
Sbjct: 528 SPLSKVKTLFPLTEVIKKKNQVTAQDVFQDNHEEGPAAKKYKTEKEEDHISISSLAEGNI 587
Query: 552 DKIGDLTPIQDFEAMMSRRDCPDWVDKAIEDMKNKIFGLLE---NSNEGINYPKAVELLV 608
K+G + P+++F ++ ++ + E+ ++ +E ++NE + + K+++ +
Sbjct: 588 TKVGSVNPVENFRFLVRQKIA------SFEEASLQLISHIEQFLDTNETLYFMKSMDCIK 641
Query: 609 ALRKGCILEQEPKQFNDVLEKVCKICRKRNFSTFFDFLMSKKLSLISKSEAVDSDITDDE 668
A R+ I E ++FN LE + + + + F++ ++ ++LI+K E S IT +E
Sbjct: 642 AFREEAIQFSEEQRFNSFLEALREKVEIKQLNHFWEIVVQDGVTLITKDEGPGSSITAEE 701
Query: 669 AGSFIVKSQPKHED 682
A F+ ED
Sbjct: 702 ATKFLAPKDKAKED 715
>sp|Q7RX73|KU80_NEUCR ATP-dependent DNA helicase II subunit 2 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=ku80 PE=3 SV=2
Length = 725
Score = 135 bits (341), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 156/667 (23%), Positives = 292/667 (43%), Gaps = 74/667 (11%)
Query: 65 GYEHVKVLQDIKVVDGHLVQSLKHL--PQGTCAGDYM--------LIKKYGETYKGKKHL 114
GYE++ VLQ++ + +++LK P T + D + +I+ + + K K+ +
Sbjct: 74 GYENISVLQELGPMTMASLRALKSKIEPSSTSSADAISAIVVALRMIQTFTKKLKYKRKI 133
Query: 115 CLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKNIVVRASLSGEPHMRVIIENDNL 174
++T+ P+ D + ++ + +++ G+ + E R +N+ +
Sbjct: 134 IVVTNGESPIDDDQSEEVANMLNDVGIELIVLGVDFDD--AEYGFKEEDKPRHKEQNEKI 191
Query: 175 LNIFSK--KSSAKTLFVDSTTSLRGARKTRDISPVTIFRGDLELSEKMK------IKVWV 226
L +S A + L R + + P + G L L + K I+V
Sbjct: 192 LKTLVDHCESGAFGTMAQAVEELATPR-IKSVRPFKAYDGPLTLGDPQKYPSALSIQVER 250
Query: 227 YKKTGEEKFPTLKKYSD--KAPSTDKF-----------ATHEVKVDYEYKSVEDPS---- 269
Y KT P+ ++ P T + VK Y+ +ED
Sbjct: 251 YFKTKRATPPSASNVANPNGPPQTQVWNEDDGVPFSGVGLQPVKQLRTYR-IEDSKAAGG 309
Query: 270 -KVVPPEQRIKGYRYGPQVVPISSAEWEAVKFKPEKSVKLLGFTDASNILRHYYMKDVNL 328
K V E K Y+YG VVP +E + +K++ KS ++GF S+ M + L
Sbjct: 310 KKDVDMEDLAKAYQYGRTVVPFGKSEEDYLKYETTKSFTIIGFVPMSSYEPFLNMGETGL 369
Query: 329 FIAEPGNSRATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPNVSEKINIPDSF 388
+A+ N A + +SAL A+ E+ A+ R V + ++ +L PN + + +I +
Sbjct: 370 IVAQKVNEEAELGLSALIHALHELESYAVARYVNKDKAPPQIL-LLKPNPAIEDDI-ECL 427
Query: 389 YFNVLPFAEDVREFQFPSFSKFPV---------SWQPNEQQQEAADNLVKMLDLAPSGKG 439
Y LPFAEDVR +QFP K PN Q+A + V +DL G+
Sbjct: 428 YDIPLPFAEDVRSYQFPPLDKVLTITGNVLTEHRLLPNNDLQQAMSDYVDAMDLTEYGQD 487
Query: 440 EILQP-ELTP-----NPALERFYHHLELKSEHQDAAPPPLDDSLKKITEPDPTLLAESQS 493
+ P E P NP + + ++ + DA PP+ + L + T P LLA++++
Sbjct: 488 DDGHPAEYAPIDDLYNPVIHHMNQAIRNRAVNPDAPLPPVAEILTRFTHPPEPLLAKAKT 547
Query: 494 AIDAFCGQFVIKE-NPKLKKSTRRFLREKP-SGSDEPNGDGSVSDAQAVNSMESKPVVTV 551
ID +K+ PK++ R KP SG D D +S+ + + P+++
Sbjct: 548 EIDGLIQAAEVKKVPPKVQGKRGRKDTVKPLSGLDI---DALLSETRP--RTKKTPIIST 602
Query: 552 DKIGDLTPIQDFEAMMSRRDCPDWVDKAIEDMKNKIFGLLENSNEGINYPKAVELLVALR 611
+ I +F+ ++ + + ++ A + M N I L+ +S + YP+A E L +R
Sbjct: 603 ENA-----IPEFKQILETAEDDETIEIAAKQMGNIICKLVSDSFADVLYPRAAENLRVMR 657
Query: 612 KGCILEQEPKQFNDVLEKVCKICRKRNFS-----TFFDFLMSKKLSLISKSEAVDSDITD 666
+ I + P +N + K+ + N + +F +++ +L LI++ E+ S++++
Sbjct: 658 EELINMEVPTLYNKYITKLKESLLSGNLNGDRREMWFRWIVGGRLGLITQDESEVSEVSE 717
Query: 667 DEAGSFI 673
+EA +F+
Sbjct: 718 NEAKAFL 724
>sp|P13010|XRCC5_HUMAN X-ray repair cross-complementing protein 5 OS=Homo sapiens GN=XRCC5
PE=1 SV=3
Length = 732
Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 110/471 (23%), Positives = 217/471 (46%), Gaps = 27/471 (5%)
Query: 214 LELSEKMKIKVWVYKKTGEEKFPTLKKYSDKAPSTDKFATHEVKVDYEYKSVEDPSKVVP 273
L + + I++ YK +E+ D +++ + Y +D V
Sbjct: 251 LTIGSNLSIRIAAYKSILQERVKKTWTVVD----AKTLKKEDIQKETVYCLNDDDETEVL 306
Query: 274 PEQRIKGYRYGPQVVPISSAEWEAVKFKPE-KSVKLLGFTDASNILRHYYMKDVNL-FIA 331
E I+G+RYG +VP S + E +K+K E K +LGF +S + R ++M + L A
Sbjct: 307 KEDIIQGFRYGSDIVPFSKVDEEQMKYKSEGKCFSVLGFCKSSQVQRRFFMGNQVLKVFA 366
Query: 332 EPGNSRATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPNVSEKINIPDSFYFN 391
+ A VA+S+L A+ +++ VAIVR + + + + VGV P++ + +
Sbjct: 367 ARDDEAAAVALSSLIHALDDLDMVAIVRYAYDK-RANPQVGVAFPHIKHNY---ECLVYV 422
Query: 392 VLPFAEDVREFQFPSFSKFPVSWQPNEQQQEAADNLVKMLDLAPSGKG-----EILQPEL 446
LPF ED+R++ F S K + P E Q A D L+ + LA + ++
Sbjct: 423 QLPFMEDLRQYMFSSL-KNSKKYAPTEAQLNAVDALIDSMSLAKKDEKTDTLEDLFPTTK 481
Query: 447 TPNPALERFYHHLELKSEHQDAAPPPLDDSLKKITEPDPTLLAESQSAIDAFCGQFVIKE 506
PNP +R + L ++ H PP+ + + P + +SQ + F + E
Sbjct: 482 IPNPRFQRLFQCLLHRALHPREPLPPIQQHIWNMLNPPAEVTTKSQIPLSKIKTLFPLIE 541
Query: 507 NPKLKKSTRRFLREKPSGSDEPNGDGSVSDAQAVN-SMESKPVVTVDKIGDLTPIQDFEA 565
K + T + + + + D P ++ + S+ S +V +G + P ++F
Sbjct: 542 AKKKDQVTAQEIFQD-NHEDGPTAKKLKTEQGGAHFSVSSLAEGSVTSVGSVNPAENFRV 600
Query: 566 MMSRRDCPDWVDKAIEDMKNKIFGLLE---NSNEGINYPKAVELLVALRKGCILEQEPKQ 622
++ ++ + E+ N++ +E ++NE + K+++ + A R+ I E ++
Sbjct: 601 LVKQKKA------SFEEASNQLINHIEQFLDTNETPYFMKSIDCIRAFREEAIKFSEEQR 654
Query: 623 FNDVLEKVCKICRKRNFSTFFDFLMSKKLSLISKSEAVDSDITDDEAGSFI 673
FN+ L+ + + + + F++ ++ ++LI+K EA S +T +EA F+
Sbjct: 655 FNNFLKALQEKVEIKQLNHFWEIVVQDGITLITKEEASGSSVTAEEAKKFL 705
Score = 41.6 bits (96), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 62/111 (55%), Gaps = 15/111 (13%)
Query: 1 MART--REALLLLLDVSPSMHSVLPDVE-------KLCSRLIQKKLIYGKNHEVGVILFG 51
M R+ + A++L +DV +M + +P +E K+ + +Q+++ E+ ++LFG
Sbjct: 1 MVRSGNKAAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFG 60
Query: 52 TEETENELTKEVGG--YEHVKVLQDIKVVDGHLVQSLKHLPQ-GTCAGDYM 99
T+ T+N L+ GG Y+++ V + + + D L++ ++ Q G+ D++
Sbjct: 61 TDGTDNPLS---GGDQYQNITVHRHLMLPDFDLLEDIESKIQPGSQQADFL 108
>sp|Q2H6C5|KU80_CHAGB ATP-dependent DNA helicase II subunit 2 OS=Chaetomium globosum
(strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 /
NRRL 1970) GN=KU80 PE=3 SV=1
Length = 736
Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 163/708 (23%), Positives = 296/708 (41%), Gaps = 101/708 (14%)
Query: 41 KNHEVGVILFGTEETENELTKE-VGGYEHVKVLQDIKVVDGHLVQSLKHLPQG--TCAGD 97
K +GV+ TEET N E + GYEH+ VLQDI + ++ L+ Q T GD
Sbjct: 49 KTWTLGVVGLNTEETNNAQDSEGLEGYEHISVLQDIGPMTMTQLRELRSSIQTSHTYGGD 108
Query: 98 YM--------LIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLR 149
+ +I+ + + K + + L+T+ P+ D ++++ +++ G+
Sbjct: 109 AISGIVVALAMIELFTKKLKYNRRIILVTNGESPIDDESSEDVANRLNYSNIELIVIGVD 168
Query: 150 MKNIVV--------RASLSGEPHMRVIIENDNLLNIFSKKSSAKTLFVDSTTSLRGARKT 201
+ + E +R ++E N + + + + L + +
Sbjct: 169 FDDADYGFKEEDKSKGKARNEKTLRKLVEQCNNGVFGTMQQAVEELAIP---------RI 219
Query: 202 RDISPVTIFRGDLELSE------KMKIKVWVYKKTGEEKFP-----TLKKYSDKAPSTDK 250
+ + P + G L L + + I V Y KT P + A ++
Sbjct: 220 KPVRPFKAYDGALTLGDPEKYKSALSIHVERYFKTKRAPAPPASTVVVNSEPGGASQSET 279
Query: 251 FATHEVKVDYEYKSVE--------DPS-----KVVPPEQRIKGYRYGPQVVPISSAEWEA 297
D E+ V+ DP + V E KGY+YG VVP S +++
Sbjct: 280 LNEDTEMGDAEFSGVKHMRTYRVNDPDAPGGKRDVEFEDLAKGYQYGRTVVPFSESDFSI 339
Query: 298 VKFKPEKSVKLLGFTDASNILRHYYMKDVNLFIAEPGNSRATVAVSALARAMKEMNKVAI 357
K + +KS +LGF S+ + + + +A+ N A + +SAL A+ E+ A+
Sbjct: 340 TKLETKKSFTILGFIPFSSYNPFLNLGETGIVVAQKHNEEAELGLSALIHALHELESYAV 399
Query: 358 VRCVWRQGQQSVVVGVLTPNVSEKINIPDSF---YFNVLPFAEDVREFQFPSFSK-FPVS 413
R V + G Q +V +L PN + I D F Y LPFAED+R +QFP K V+
Sbjct: 400 ARYVQKDGAQPQLV-LLKPNPA----IEDDFECLYDVPLPFAEDLRSYQFPPLDKVLTVT 454
Query: 414 WQ--------PNEQQQEAADNLVKMLDLAPSGKGEILQP-ELTP-----NPALERFYHHL 459
P+E ++A + V +DL+ E +P E P NP + R +
Sbjct: 455 GNIIKEHRLLPSEDLKQAMSDFVDAMDLSGFDVDEDGKPTEYAPIDETYNPTIHRMNQAI 514
Query: 460 ELKSEHQDAAPPPLDDSLKKITEPDPTLLAESQSAIDAFCGQFVIKENPKLKKSTRRFLR 519
++ DA P + L + ++P L+ +++ I+A IK+ P K+ R R
Sbjct: 515 RARAVDPDAPIKPPAEILLRFSKPPEKLIEKAKPEIEALIDAAEIKKVP--AKAQGRGSR 572
Query: 520 EKP----SGSDEPNGDGSVSDAQAVNSMESKPVVTVDKIGDLTPIQDFEAMMSRRDCPDW 575
++P SG D ++S+ + T + + P +F+ +++
Sbjct: 573 KEPVKPLSGLD-------------IDSLLGESKRTTISLDNAVP--EFKQILATAADDAT 617
Query: 576 VDKAIEDMKNKIFGLLENSNEGINYPKAVELLVALRKGCILEQEPKQFNDVLEKVCKICR 635
++ A + M + L+++S + Y +A E L +R+ I + P +N L + K
Sbjct: 618 IESAAKQMGQIVRKLIQDSFADLFYARAAENLRVMREELISLEVPGLYNKFLTGLKKSIL 677
Query: 636 KRNFS-----TFFDFLMSKKLSLISKSEAVDSDITDDEAGSFIVKSQP 678
+F ++ LSLI++ E+ S++T +EA + S+P
Sbjct: 678 SGELDGDRREMWFKHIVGGHLSLITQDESEVSEVTAEEAKALCAWSRP 725
>sp|Q2MHH1|KU80_ASPSO ATP-dependent DNA helicase II subunit 2 OS=Aspergillus sojae
GN=ku80 PE=3 SV=1
Length = 725
Score = 117 bits (292), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 172/749 (22%), Positives = 307/749 (40%), Gaps = 121/749 (16%)
Query: 5 REALLLLLDVSPSMHSV-----LPDVE----KLCSRLIQKKLIYGKNHEVGVILFGTEET 55
+EA + ++DV SM + D+E + R+ K +GVI T+ET
Sbjct: 4 KEATVYIVDVGRSMGECRNGRSVTDLEWAMQYVWDRITGTVATGRKTATMGVIGLRTDET 63
Query: 56 ENELTKEVGGYEHVKVLQDIKVVDGHLVQSLKHL-----PQGTCAGDYM--------LIK 102
NEL +V + H+ VL +IK L+ ++ L P T GD + +I
Sbjct: 64 SNELEDDVH-FSHIAVLSNIK---QFLMPDIRKLEDELKPSKTDKGDAISAIILAIQMII 119
Query: 103 KYGETYKGKKHLCLITDALCPLKDPDVG-----TKEDQVSTIARQM----VAFGLRMKNI 153
+ + K ++ + L+T+ + D D+G KED + + + +G + ++
Sbjct: 120 THCKKLKYRRKIALVTNGQGRMSDEDLGEIVKKVKEDNIELVVMGIDFDDPEYGYKEEDK 179
Query: 154 VVRASLSGEPHMRVIIEN-DNLLNIFSKKSSAKTLFVDSTTSLRGARKTRDISPVTIFRG 212
R + E +R ++E+ D + F + + L + S+R V F+G
Sbjct: 180 DPRKA-ENETLLRTLVEDCDGVYGTFEQ--AVAELDIPRVKSVRS---------VASFKG 227
Query: 213 DLELSE------KMKIKVWVYKKTGEEKFPTLKKY---------------------SDKA 245
L+L ++I V Y +T K PT + + K
Sbjct: 228 YLQLGNPEDYDSALRIPVERYYRTYPAKPPTASSFVLRSEPEAGQEEAESSEAAAATQKG 287
Query: 246 PSTDKFATHEVKVDYEYKSVEDPS----KV-VPPEQRIKGYRYGPQVVPISSAEWEAVKF 300
+ V+ Y+ VED S K+ + + KGY YG V IS +
Sbjct: 288 SQSGDIGLTTVRTMRTYQ-VEDKSAPGGKIDIERDDLAKGYEYGRTAVHISETDENITIL 346
Query: 301 KPEKSVKLLGFTDASNILRHYYMKDVNLFIAEPGNSRATVAVSALARAMKEMNKVAIVRC 360
++L+GF R+ +M + N+ IA+ N +A +A+S+ A+ E+ A+ R
Sbjct: 347 DTFAGLELMGFIQTDRYQRYMHMSNTNIIIAQRANDKAALALSSFIHALFELECYAVARL 406
Query: 361 VWRQGQQSVVVGVLTPNVSEKINIPD--SFYFNVLPFAEDVREFQFPSFSK-FPVSWQ-- 415
V ++ + V+V +L P++ PD LPFAEDVR ++FP K VS +
Sbjct: 407 VVKENKPPVIV-LLAPSIE-----PDYECLLEVQLPFAEDVRTYRFPPLDKVITVSGKVV 460
Query: 416 ------PNEQQQEAADNLVKMLDLAPSGKG----EILQPELTPNPALERFYHHLELKSEH 465
PN+ + V ++L + + E + + +P L R + ++ H
Sbjct: 461 TQHRNLPNDDLLDVMGKYVNSMELVDADEDGDPVETFPIDDSYSPVLHRIDAAIRARAIH 520
Query: 466 QDAAPPPLDDSLKKITEPDPTLLAESQSAIDAFCGQFVIKE-NPKLKKSTRRFLREKPSG 524
D PP + L K + P L+ SQ ++ +K+ PK K R EKP
Sbjct: 521 PDQPIPPPSERLTKFSHPREDLIERSQKYLEKLIEIADVKKVPPKAKGRKRTRETEKPL- 579
Query: 525 SDEPNGDGSVSDAQAVNSMESKPVVTVDKIGDLTPIQDFEAMMSRRDCPDWVDKAIEDMK 584
S D A+ E + KI I +F+ +++ + + + A + M
Sbjct: 580 --------SGLDVDALLHHEKRA-----KISPNNAIPEFKQTLAQAENIEAIKDATKQMM 626
Query: 585 NKIFGLLENSNEGINYPKAVELLVALRKGCILEQEPKQFNDVL----EKVCKICRKRNFS 640
+ +++S NY + +E L +R + +EP +ND L +K+ + +
Sbjct: 627 VIVEDQIKHSLGNANYDRVIEALGTMRDELVSYEEPASYNDFLGQLKDKLLQEKLGGDRQ 686
Query: 641 TFFDFLMSKKLSLISKSEAVDSDITDDEA 669
+ + KL L+++ E+ S +TD EA
Sbjct: 687 ELWWLVRRNKLGLVTQRESDQSRVTDTEA 715
>sp|Q4WI96|KU80_ASPFU ATP-dependent DNA helicase II subunit 2 OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=ku80 PE=3 SV=1
Length = 725
Score = 116 bits (290), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 153/685 (22%), Positives = 289/685 (42%), Gaps = 79/685 (11%)
Query: 41 KNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVVDGHLVQSLKHL--PQGTCAGDY 98
K +GVI T+ET NEL + ++H+ V +I+ ++ L L P T GD
Sbjct: 49 KTATIGVIGLKTDETSNELDDD-PHFKHISVFTEIQQFLMPDIRRLGALVKPSETDKGDA 107
Query: 99 M--------LIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRM 150
+ +I Y + K K+ + L+T+ + + D+ ++ +V G
Sbjct: 108 ISAIILAIQMIVTYCKKLKYKRKIVLVTNGQGWMSNEDLDQITKKIKEDNIDLVVLGTDF 167
Query: 151 KNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTLFVDSTTSLRGARKTRDISPVTIF 210
+ G+ + EN+ LL + + ++ S + + + V F
Sbjct: 168 DDPEYGFKEEGKDPRKA--ENEALLRGLVEDCNGAFGTLEQAVSEMDIPRAKRVRTVATF 225
Query: 211 RGDLELSE------KMKIKVWVYKKTGEEKFPTLKKY---SDKAPSTDKFATHEVKVD-- 259
+G L+L ++I V Y +T K P+ + SD ++ + ++
Sbjct: 226 KGFLQLGNPEEYDTALRIPVERYYRTYVAKPPSASSFVLRSDVGAEGEQGESSQLPKSPP 285
Query: 260 --------YEYKSVEDPSKVVPP-------EQRIKGYRYGPQVVPISSAEWEAVKFKPEK 304
++ E P + P E+ KGY YG V IS + +
Sbjct: 286 EGGALTSVRNLRTYEVPDENAPGGKFDVEREELAKGYEYGRTAVHISETDENITTLETYA 345
Query: 305 SVKLLGFTDASNILRHYYMKDVNLFIAEPGNSRATVAVSALARAMKEMNKVAIVRCVWRQ 364
+++L+GF R+ +M N+ I + GN +A++A+S+ A+ E+ A+ R V ++
Sbjct: 346 ALELVGFIQTDKYDRYMHMSTTNIIIGQRGNDKASLALSSFIHALFELECYAVARLVVKE 405
Query: 365 GQQSVVVGVLTPNVSEKINIPD--SFYFNVLPFAEDVREFQFPSFSK-FPVSWQ------ 415
+ V+V +L P++ PD LPFAEDVR ++FP K VS +
Sbjct: 406 NKPPVMV-LLAPSIE-----PDYECLLEVQLPFAEDVRTYRFPPLDKVITVSGKVVTEHR 459
Query: 416 --PNEQQQEAADNLVKMLDLAPSGKG----EILQPELTPNPALERFYHHLELKSEHQDAA 469
PN+ +A V ++L + + E L + + +P L R + ++ H D
Sbjct: 460 NLPNKDLLDAMSEYVDSMELVDTDETGNPVEGLPIDDSFSPVLHRIDSAIRYRAIHPDDP 519
Query: 470 PPPLDDSLKKITEPDPTLLAESQSAIDAFCGQFVIKE-NPKLKKSTRRFLREKPSGSDEP 528
P +L K+++P L+ +S++ + +K+ PK+K R EKP
Sbjct: 520 VLPPSKNLTKLSQPPQDLVEKSKAYLQKLMEAADVKKVPPKVKGRKRIRESEKPL----- 574
Query: 529 NGDGSVSDAQAVNSMESKPVVTVDKIGDLTPIQDFEAMMSRRDCPDWVDKAIEDMKNKIF 588
S D A+ E + +I I +F+ +++ + + + A++ M + I
Sbjct: 575 ----SGLDVDALLHQEKRA-----RISPTNAIPEFKQTLTQAETIETIKDAVKQMTSIIE 625
Query: 589 GLLENSNEGINYPKAVELLVALRKGCILEQEPKQFNDVLEKVCKICRKRNFS----TFFD 644
++NS NY + +E + +R+ I +EP +ND L ++ K +
Sbjct: 626 DQIKNSLGDANYDRVIEEMGVMREELISFEEPALYNDFLRQLKDKLLKEELGGDRRELWW 685
Query: 645 FLMSKKLSLISKSEAVDSDITDDEA 669
L +L LI++ E+ SD+T+++A
Sbjct: 686 LLRRSQLGLINQRESDQSDVTEEQA 710
>sp|Q2MHH2|KU80_ASPOR ATP-dependent DNA helicase II subunit 2 OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) GN=ku80 PE=3 SV=1
Length = 725
Score = 113 bits (283), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 164/738 (22%), Positives = 301/738 (40%), Gaps = 99/738 (13%)
Query: 5 REALLLLLDVSPSMHSV-----LPDVE----KLCSRLIQKKLIYGKNHEVGVILFGTEET 55
+EA + ++DV SM + D+E + R+ K +GVI T+ET
Sbjct: 4 KEATVYIVDVGRSMGECRNGRSVTDLEWAMQYVWDRITGTVATGRKTAMMGVIGLRTDET 63
Query: 56 ENELTKEVGGYEHVKVLQDIKVVDGHLVQSLKHL-----PQGTCAGDYM--------LIK 102
NEL +V + H+ VL ++K L+ ++ L P T GD + +I
Sbjct: 64 SNELEDDVH-FSHIAVLSNLK---QFLMPDIRKLEDELKPSKTDKGDAISAIILAIQMII 119
Query: 103 KYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKNIVV-RASLSG 161
+ + K ++ + L+T+ + D D+G +V ++V G+ +
Sbjct: 120 THCKKLKYRRKIVLVTNGQGRMSDEDLGEIVKKVKEDNIELVVMGIDFDDPEYGYKEEDK 179
Query: 162 EPHMRVIIENDNLLNIFSKKSSAKTLFVDSTTSLRGARKTRDISPVTIFRGDLELSE--- 218
+PH EN+ LL + + + + + + V F+G L+L
Sbjct: 180 DPHK---AENETLLRTLVEDCDGVYGTFEQAVAELDIPRVKSVRSVASFKGYLQLGNPEE 236
Query: 219 ---KMKIKVWVYKKTGEEKFPTLKKY---------------------SDKAPSTDKFATH 254
++I V Y +T K PT + + K +
Sbjct: 237 YDSALRIPVERYYRTYPAKPPTASSFVLRSEPEAGQEEAESSEAAAATQKGSQSGDAGLT 296
Query: 255 EVKVDYEYKSVEDPS----KV-VPPEQRIKGYRYGPQVVPISSAEWEAVKFKPEKSVKLL 309
V+ Y+ VED S K+ + ++ KGY YG V IS + ++L+
Sbjct: 297 TVRTMRTYQ-VEDKSAPGGKIDIERDELAKGYEYGRTAVHISETDENITILDTFAGLELM 355
Query: 310 GFTDASNILRHYYMKDVNLFIAEPGNSRATVAVSALARAMKEMNKVAIVRCVWRQGQQSV 369
GF R+ +M + N+ IA+ N +A +A+S+ A+ E+ A+ R V ++ + V
Sbjct: 356 GFIQTDQYQRYMHMSNTNIIIAQRANDKAALALSSFIHALFELECYAVARLVVKENKPPV 415
Query: 370 VVGVLTPNVSEKINIPDSFYFNVLPFAEDVREFQFPSFSK-FPVSWQ--------PNEQQ 420
+V +L P++ + + LPFAEDVR ++FP K VS + P++
Sbjct: 416 IV-LLAPSIEPEY---ECLLEVQLPFAEDVRTYRFPPLDKVITVSGKVVTQHRNLPSDDL 471
Query: 421 QEAADNLVKMLDLAPSGKG----EILQPELTPNPALERFYHHLELKSEHQDAAPPPLDDS 476
+ V ++L + + E + + +P L R + ++ H D PP +
Sbjct: 472 LDVMGKYVNSMELVDADEDGDPVETFPIDDSYSPVLHRIDAAIRARAIHPDQPIPPPSER 531
Query: 477 LKKITEPDPTLLAESQSAIDAFCGQFVIKE-NPKLKKSTRRFLREKPSGSDEPNGDGSVS 535
L K + P L+ +SQ ++ +K+ PK K R EKP S
Sbjct: 532 LTKFSHPREDLIEKSQKHLEKLIEIADVKKVPPKAKGRKRTRETEKPL---------SGL 582
Query: 536 DAQAVNSMESKPVVTVDKIGDLTPIQDFEAMMSRRDCPDWVDKAIEDMKNKIFGLLENSN 595
D A+ E + KI I +F+ +++ + + + A + M + +++S
Sbjct: 583 DVDALLHHEKRV-----KISPNNAIPEFKQTLAQAENIEAIKDATKQMMVIVEDQIKHSL 637
Query: 596 EGINYPKAVELLVALRKGCILEQEPKQFNDVL----EKVCKICRKRNFSTFFDFLMSKKL 651
NY + +E L +R + +EP +ND L +K+ + + + + KL
Sbjct: 638 GNANYDRVIEALGTMRDELVSYEEPASYNDFLGQLKDKLLQEKLGGDRQELWWLVRRNKL 697
Query: 652 SLISKSEAVDSDITDDEA 669
L+++ E+ S +TD EA
Sbjct: 698 GLVTQRESDQSRVTDTEA 715
>sp|Q5B4H8|KU80_EMENI ATP-dependent DNA helicase II subunit 2 OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=ku80 PE=3 SV=1
Length = 725
Score = 112 bits (280), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 167/757 (22%), Positives = 314/757 (41%), Gaps = 125/757 (16%)
Query: 5 REALLLLLDVSPSMHSV-----LPDVE---KLCSRLIQKKLIYG-KNHEVGVILFGTEET 55
+EA + ++DV SM L D+E K I + G K +GVI T+ T
Sbjct: 4 KEATVYIVDVGKSMGERRNGRDLTDLEWAMKYVWDCITNTVATGRKTAMLGVIGLKTDGT 63
Query: 56 ENELTKEVGGYEHVKVLQDIKVVDGHLVQSLKHL-----PQGTCAGDYM--------LIK 102
+NEL E + H+ VL +IK L+ ++ L P GD + +I
Sbjct: 64 DNELGDE-SHFSHISVLSEIK---QFLMSDIRELGERIKPSSVDKGDAISALILAIQMII 119
Query: 103 KYGETYKGKKHLCLITDALCPLKDPDVG-----TKEDQVSTIARQMVA----------FG 147
+ + K K+ + LIT+ L + ++ KED + I + +G
Sbjct: 120 THCKKLKWKRKIVLITNGLGRMNSENLDDIVSKVKEDNIELIILDLTGRRGPDFDDAEYG 179
Query: 148 LRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTLFVDSTTSLRGARKTRDISPV 207
++ ++ +PH N+ LL +++ ++ + + + PV
Sbjct: 180 IKEED--------KDPHK---ASNETLLRTITERCDGVFGTLEQAVEETEIPRVKPVRPV 228
Query: 208 TIFRGDLELSE------KMKIKVWVYKKTGEEKFPTLKKY---SDKAPSTD----KFATH 254
F+G L+L ++I V Y +T K PT ++ SD A + A
Sbjct: 229 ASFKGFLQLGNPEEYDTAVRIPVERYPRTMVAKPPTASQFVLRSDLAAGQEGPVSSTAVP 288
Query: 255 EVKVD-------------YEYKSVEDPSKVVPPEQR--IKGYRYGPQVVPISSAEWEAVK 299
E + + Y+ P + E+ KGY YG V IS + +
Sbjct: 289 ETQPEDGSNLTNVRNLRTYQVSDESAPGGKIDVERDDLAKGYEYGRTAVHISETDENITR 348
Query: 300 FKPEKSVKLLGFTDASNILRHYYMKDVNLFIAEPGNSRATVAVSALARAMKEMNKVAIVR 359
+ +++L+GF + R+ ++ + ++ IA N +A++A+S+ A+ E+ A+ R
Sbjct: 349 LETTAAMELVGFIQSERYDRYMHLSNTHIIIANRANDKASLALSSFIHALFELESYAVAR 408
Query: 360 CVWRQGQQSVVVGVLTPNVSEKINIPD--SFYFNVLPFAEDVREFQFPSFSK-FPVSWQ- 415
V ++ + +V +L P++ PD LPFAEDVR ++FP VS +
Sbjct: 409 LVTKENKPPTLV-LLAPSIE-----PDYECLLEVQLPFAEDVRTYRFPPLDHVVTVSGKV 462
Query: 416 -------PNEQQQEAADNLVKMLDLAPSGK-GEILQPELTP-------NPALERFYHHLE 460
PN+ +A D V ++L + + G+++ TP +P L R +
Sbjct: 463 VTQHRNLPNDDLLDAMDKYVDSMELKGTDEDGDLVN---TPFPIDDSFSPVLHRVNAAIR 519
Query: 461 LKSEHQDAAPPPLDDSLKKITEPDPTLLAESQSAIDAFCGQFVIKENPKLKKSTRRFLRE 520
++ H + PP L + ++P LL ++ + +K+ P K +R
Sbjct: 520 SRAIHPNDPIPPPARILTQFSQPPEHLLKNAERHLKRLIEVADVKKVPPKAKGRKR---- 575
Query: 521 KPSGSDEPNGDGSVSDAQAVNSMESKPVVTVDKIGDLTPIQDFEAMMSRRDCPDWVDKAI 580
+ EP S D ++ E + +I I +F+ +++ + + + A+
Sbjct: 576 ----AREPEKPLSGLDVDSLLHQEKRV-----RISPNNAIPEFKQTLAQAENIETMKDAV 626
Query: 581 EDMKNKIFGLLENSNEGINYPKAVELLVALRKGCILEQEPKQFNDVLEKVCKICRKRNFS 640
+ M++ + + +S NY + E L +R+ I +EP +ND++ K+ + K
Sbjct: 627 KQMRSILEDQIRHSLGDANYDRVTEGLGVVREELIAYEEPGLYNDLIRKLKEALLKEKLG 686
Query: 641 ----TFFDFLMSKKLSLISKSEAVDSDITDDEAGSFI 673
+ L KL LI + E+ S++T++EA F+
Sbjct: 687 GDQRELWWLLKRSKLGLIEQRESELSEVTEEEAKKFM 723
>sp|Q6C7B9|KU80_YARLI ATP-dependent DNA helicase II subunit 2 OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=KU80 PE=3 SV=1
Length = 726
Score = 110 bits (276), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 131/524 (25%), Positives = 232/524 (44%), Gaps = 62/524 (11%)
Query: 33 IQKKLIYGKNHEV-GVILFGTEETENELTKEVGGYEHVKVLQDIKVVD-GHLVQSLKHL- 89
I K++ G+ +V G++ T+ T+N + +E G+EH+ ++ I+ + L+++ K L
Sbjct: 44 ISNKILSGRKTDVVGLVGVHTDTTQN-MFEEESGFEHIDIITPIQQFNLDTLLEAKKQLV 102
Query: 90 PQGTCAGDYM--------LIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIAR 141
P GD + +IK Y + K +++ ++T+ + D G Q++
Sbjct: 103 PNSDNKGDLISGIVVAVQMIKLYTKALKYIRNIVVLTNGQGNMNLGDSGGIIKQLNENRI 162
Query: 142 QMVAFGLRMKNIVVRASLSGEP-HMRVIIENDNLLNIFSKK--SSAKTLFVDSTTSLRGA 198
+ G+ + V +P H R EN+ L F + S + ++ SL
Sbjct: 163 ILKVMGVDFDDEEVDYFEEDKPEHKR---ENELKLKEFVDRCEDSVFATYKEARDSL-DI 218
Query: 199 RKTRDISPVTIFRGDLELSEKMKIKVWVYKKTGEEKFPTLKKYSDKAPSTDKFATHE--- 255
K + ++PV F+G+L LS+ + G E FP ++ + S+ + E
Sbjct: 219 PKVKAVNPVRAFQGNLVLSDPEQQPPQRVMSIGVEVFPCTRRATAMTASSYAMSKIEPAT 278
Query: 256 -----------VKVDYEYKSVEDPSKVVPPEQRIK-----GYRYGPQVVPISSAEWEAVK 299
VK D +Y V D S + ++ + GYRYG ++V I+ E EA+
Sbjct: 279 ISTPSQNNLQAVKWDRQY-YVNDESGIGGKKELDRDTLENGYRYGSEIVYITKEEEEAIM 337
Query: 300 FKPEKSVKLLGFTDASNILRHYYMKDVNLFIAEPGNSRATVAVSALARAMKEMNKVAIVR 359
F S++++GF + ++ + M + I + GN+R VA+SA ARA+ E + + R
Sbjct: 338 FPTSASLQVIGFVNKKSVPPYMLMGHTDYIIGQRGNNRDAVAISAFARALFETDNFGLAR 397
Query: 360 CVWRQGQQSVVVGVLTPNVSEKINIPDSFYFNVLPFAEDVREFQFPSFSKFPV------- 412
V + G+ +V VL P + ++ + F LPFAED R+F PS +
Sbjct: 398 YVNKDGKDPQIV-VLMPYIRAEL---EGLVFCQLPFAEDERKFILPSLTSLETRSGNKTV 453
Query: 413 ----SWQPNEQQQEAADNLVKMLDLAPSGKGEILQPELTPNPALERFYHHLE------LK 462
P ++ +A D+ V +DL+ KGE +P LT HH+
Sbjct: 454 TTHSRLLPTKEMLDAMDDYVDAMDLSKL-KGEDDEPWLTMEECFNPSIHHIRNVVKECAV 512
Query: 463 SEHQDAAPPPLDDSLKKITEPDPTLLAESQSAIDAFCGQFVIKE 506
S+ P PL L + ++P L E++ ++ F IKE
Sbjct: 513 SQDYGKIPEPL-PILTRFSQPAEELTEEAKPQLELLKHLFDIKE 555
>sp|Q1E6K9|KU80_COCIM ATP-dependent DNA helicase II subunit 2 OS=Coccidioides immitis
(strain RS) GN=KU80 PE=3 SV=1
Length = 731
Score = 106 bits (265), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 154/697 (22%), Positives = 283/697 (40%), Gaps = 85/697 (12%)
Query: 41 KNHEVGVILFGTEETENELTK--EVGGYEHVKVLQDIKVVDGHLVQSLKHL--PQGTCAG 96
K VGV+ T+ + N L + E Y H+ V Q+I + ++ L+ L P T G
Sbjct: 49 KTATVGVVGLRTDGSSNPLWEKDEEESYAHLSVFQEIGQMLMPDIRKLRDLVKPSNTNQG 108
Query: 97 DYM--------LIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGL 148
D + +I +Y + K K+ + L+TD + + + ++ ++V G+
Sbjct: 109 DAISSIILAIDMIVRYCKRLKYKRKIVLVTDGRSTMDSDGIDSIVSKIKEEGIELVILGV 168
Query: 149 RMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTLFVDSTTSLRGARKTRDISPVT 208
+ E +N+++L I + + + + + + +
Sbjct: 169 DFDD--PDYGFKEEDKDPFKTKNESVLKILADDADGAYGTLAQAVEEMTTPRIKVVRGIP 226
Query: 209 IFRGDLEL------SEKMKIKVWVYKKTGEEKFPTLKKYSDKAPSTDKFATHEVKVDYE- 261
FRGDL L S + I+V Y +T + P ++ +T E V +
Sbjct: 227 SFRGDLRLGDPSQYSTGLTIQVERYYRTYVARPPAASAFALSIAPPKGQSTAESSVTLQN 286
Query: 262 ----------------------YKSVEDPS----KVVPPEQRIKGYRYGPQVVPISSAEW 295
Y+ +++ + K V + KGY YG V IS ++
Sbjct: 287 GDSTVETANASNNLSGVRNARSYQVIDENAPGGKKEVERDDLAKGYEYGRTAVHISESDE 346
Query: 296 EAVKFKPEKSVKLLGFTDASNILRHYYMKDVNLFIAEPGNSRATVAVSALARAMKEMNKV 355
K +++ +GF + N R+ M N+ IA+ N +A +A+S++ A+ E+
Sbjct: 347 VITKLDTTAALEFIGFIQSENYERYMNMSTSNVIIAQKINDKAILALSSMIHALFELEYY 406
Query: 356 AIVRCVWRQGQQSVVVGVLTPNVSEKINIPDSFYFNVLPFAEDVREFQFPSFSKF-PVSW 414
AI R V + G+ ++V +L P + + LPFAED R ++FP K VS
Sbjct: 407 AIGRLVTKDGKPPLMV-LLAPLIETDF---ECLLEVQLPFAEDTRSYRFPPLDKIVTVSG 462
Query: 415 Q--------PNEQQQEAADNLVKMLDLAPSGKG----EILQPELTPNPALERFYHHLELK 462
+ P++ E V+ +DL+ + + L E +P + R + +
Sbjct: 463 KVVKEHRNLPSDDLLETMGKYVEDMDLSEFDENGDPFQSLALEDCYSPLVHRIDQAIRWR 522
Query: 463 SEHQDAAPPPLDDSLKKITEPDPTLLAESQSAI-DAFCGQFVIKENPKLKKSTRRFLREK 521
+ H PP+ L+K++ L+ +S ++ D V K PK K RR +K
Sbjct: 523 AVHPTKPLPPVPKVLEKLSHWPEELVKKSHDSLRDLISISAVKKVPPKAKGRKRRREADK 582
Query: 522 P-SGSDEPNGDGSVSDAQAVNSMESKPVVTVDKIGDLTPIQDFEAMMSRRDCPDWVDKAI 580
P SG N D + + + KI PI +F+ ++ + + A+
Sbjct: 583 PLSGL---NVDDLLRGEKRL------------KISPENPIPEFKQTLANTEDISAISDAV 627
Query: 581 EDMKNKIFGLLENSNEGINYPKAVELLVALRKGCILEQEPKQFNDVL----EKVCKICRK 636
+ M I + S INY +A+E + +R+ I +EP +ND + EK+
Sbjct: 628 KQMSAIIEDQIRQSLGDINYDRAIEGIGTMREELIAYEEPGLYNDFIRGLKEKLLDDKLG 687
Query: 637 RNFSTFFDFLMSKKLSLISKSEAVDSDITDDEAGSFI 673
+ + + +L LI + SDIT+++A F+
Sbjct: 688 GDRREMWWLIRKSRLGLIDQKALDISDITEEQAREFL 724
>sp|Q0U8L4|KU80_PHANO ATP-dependent DNA helicase II subunit 2 OS=Phaeosphaeria nodorum
(strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=KU80 PE=3
SV=1
Length = 715
Score = 97.4 bits (241), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 130/534 (24%), Positives = 224/534 (41%), Gaps = 86/534 (16%)
Query: 200 KTRDISPVTIFRGDLELSE------KMKIKVWVYKKTGEEKFPTLKKYSDKA-------- 245
+ ++ PV F+G L L + + I V Y T K PT ++ +
Sbjct: 203 RLKETRPVPSFKGQLTLGDPGHYDATLTIDVERYPCTMLAKPPTASSFATRTDFGAGSAA 262
Query: 246 ---------------PSTDKFATHEVKVDYEYKSVEDPS--KVVPPEQRIKGYRYGPQVV 288
P TD A +V Y+ + E+P K V ++ +GY YG V
Sbjct: 263 GPSDESSHTMTGEEQPMTDLSAVRNQRV-YQVDNEEEPGMKKNVEMDELERGYEYGRTAV 321
Query: 289 PISSAEWEAVKFKPEKSVKLLGFTDASNILRHYYMKDVNLFIAEPGNSRATVAVSALARA 348
IS ++ VK + + L+GF A R+ + N + + GN A +++S+ A
Sbjct: 322 HISESDMNVVKLETTPMLSLIGFVKAEAFERYLPLSRSNFLVPQRGNQAAQLSLSSFIHA 381
Query: 349 MKEMNKVAIVRCVWRQGQQSVVVGVLTPNVSEKINIPDSFYFNV-LPFAEDVREFQFPSF 407
+ E + A+ R V ++ + V+V +L P +I + +V LPF ED+R ++FP
Sbjct: 382 LYEADCYAVARLVTKELKPPVIV-LLVP----RIEVEWEALVDVELPFEEDMRRYKFPPL 436
Query: 408 S-KFPVSWQ--------PNEQQQEAADNLVKMLDLAPSGK------GEILQPELTPNPAL 452
K +S + P ++ +A V +DL+ G+ E +PE T +P +
Sbjct: 437 DRKLTISGKVITEHKDLPTDELTDAMSKYVDAMDLSTFGRDEDGNPAEYAKPEDTFSPIV 496
Query: 453 ERFYHHLELKSEHQDAAPPPLDDS--LKKITEPDPTLLAESQSAIDAF-CGQFVIKENPK 509
R H + ++ H D + P S L K P LL S S +A V K PK
Sbjct: 497 HRIGHIIRWRATHPDPSLPMPPPSDILTKYANPPADLLDASTSQFEALKKAARVSKVPPK 556
Query: 510 LKKSTRRFL--REKP-SGSDEPNGDGSVSDAQAVNSMESKPVVTVDKIGDLTPIQDFEAM 566
+K +R R+KP SG D ++++ P +L P F+
Sbjct: 557 VKGRGKRNRAERDKPISGLD-------------IDALLGNPNRVKIDPSNLVP--SFKNA 601
Query: 567 MSRRDCPDWVDKAIEDMKNKIFGLLENSNEGINYPKAVELLVALRKGCILEQEPKQFN-- 624
++ D + + +A + M +I L+ +S Y +A+E L +R +EP+ +N
Sbjct: 602 LAASDDLETIKEAAQSMSTEIRSLIRSSVGDSGYGRALEALRVMRDELTELEEPEIWNEF 661
Query: 625 ------DVLEKVCKICRKRNFSTFFDFLMSKKLSLISKSEAVDSDITDDEAGSF 672
D+LE RK + + + L+ + + SD+T++EA +F
Sbjct: 662 IRGLKSDLLEGKLNGNRKDMWWK----IRGNRYGLVDRKRSFVSDVTEEEASAF 711
>sp|Q9HGM8|KU80_SCHPO ATP-dependent DNA helicase II subunit 2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pku80 PE=1 SV=1
Length = 695
Score = 79.3 bits (194), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 141/647 (21%), Positives = 265/647 (40%), Gaps = 64/647 (9%)
Query: 32 LIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVVDGHLVQSLKHL-- 89
L K L K VG++ + ++T+N+L E Y ++ VL I+ +QS+
Sbjct: 40 LSHKFLANRKTDVVGIVGYKCDDTKNDLA-EQEAYWNISVLYPIQTALFSKLQSVSQTLK 98
Query: 90 PQGTCAGDYM--------LIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIAR 141
P T GD + L+ ++ + K KK + ++T A + D +Q+
Sbjct: 99 PSNTMQGDLISAIVVSFDLMARHCKKNKWKKKMIVLTAARGIIDFSDYIGIAEQLLQHDV 158
Query: 142 QMVAFGLRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTLFVDSTTSLRGARKT 201
+ +G+ + S + + EN+ + F + + + G
Sbjct: 159 FLGVYGVDFDQEDINYSEPLKESQKK--ENEVRIQEFVESCHGQYCTFQQIYNNIGKPWV 216
Query: 202 RDISPVTIFRGDLELSEK------MKIKVWVYKKTGEEKFPTLKKYSDKAPSTDKFATHE 255
R + PV IFRG + + + I+V Y +T K PT + + S + +
Sbjct: 217 RKVRPVAIFRGTFSIGNRDSKDTSISIQVERYPRTRLTKPPTSSAFYENDMSKNYECLNI 276
Query: 256 VKVDYEYKSVE-------------DP----SKVVPPEQRIKGYRYGPQVVPISSAEWEAV 298
+ E KS+E DP S V E GY YG +VPIS ++ + +
Sbjct: 277 ENSNVENKSMESDAVSTVRSYMVRDPKTNDSFEVKREDLESGYSYGRTIVPISRSDEDVL 336
Query: 299 KFKPEKSVKLLGFTDASNILRHYYMKDVNLFIAEPGNSRATVAVSALARAMKEMNKVAIV 358
++LGF S++ +Y + D N+ + + + + + SA ++++ ++ A+
Sbjct: 337 ALDTIPGYEILGFIPKSSLPIYYTISDTNIIVPK-DDFESKLNFSAFVQSLEREHRYALA 395
Query: 359 RCVWRQGQQSVVVGVLTPNVSEKINIPDSFYFNV-LPFAEDVREFQFPSFSKFPVSWQPN 417
R V + V++ VL P V K + + ++ LPFAEDVR + F F K + +
Sbjct: 396 RFVSKDKGVPVLL-VLMPYVEFKRH----YLVDIQLPFAEDVRPYSFSEFEKLS-NEEDM 449
Query: 418 EQQQEAADNLVKMLDLAPSGKGEILQPELTPNPALERFYHHLELKSEHQDAAP----PPL 473
Q A N + +DL S G P P H L+ + +P P
Sbjct: 450 RQIDFAVSNYIDNMDLDSSDCG--FNPPFEPENTFSMIPHRLQQAISYYANSPEGDLPQP 507
Query: 474 DDSLKKITEPDPTLLAESQSAIDAFCGQFVIKENPKLKKSTRRFLREKPSGSDEPNGDGS 533
+ L + T P +LL + + + K K S+ +E + P +
Sbjct: 508 NIYLTRYTNPPKSLLDNCILDLKLIKEKLTVNVPVKPKYSS----QETAFDTGAPISEEQ 563
Query: 534 VSDA--QAVNSMESKPVVTVDKIGDLTPIQDFEAMMSRRDCPDWVDKAIEDMKNKIFGLL 591
+ + ++ E + ++ + + + P+ F ++ P ++ A+ +M+ I L+
Sbjct: 564 IEELLNSGLDEQEGEKLLVL-HVSEKDPVGTFTEVLKN---PFGLEDALTEMEKVIKNLI 619
Query: 592 ENSNEGINYPKAVELLVALRKGCILEQEPKQFNDVLEKVCKICRKRN 638
+ S Y A++ L +LR ILE E ++FN+ L ++ K + N
Sbjct: 620 DKS----KYDLALQSLQSLRLHSILEDEVERFNEYLTRLKKDVMQNN 662
>sp|Q7SA95|KU70_NEUCR ATP-dependent DNA helicase II subunit 1 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=ku70 PE=3 SV=2
Length = 645
Score = 66.2 bits (160), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 116/542 (21%), Positives = 215/542 (39%), Gaps = 115/542 (21%)
Query: 5 REALLLLLDVSPSM--------------HSVLPDVEKLCSRLIQKKLIYGKNHEVGVILF 50
++A+L +DVS SM S L +++Q+++I +GV+LF
Sbjct: 29 KDAVLFAIDVSKSMLKPPQNTGDKKADKDSALTAALTCAYQIMQQRIISQPKDMMGVLLF 88
Query: 51 GTEETENELTKEVG-GYEHVKVLQDIKVVDGHLVQSLKHLPQGTCAGDYMLIKK------ 103
GTE+++ G GY H +L D+ + V+ LK L + D +++
Sbjct: 89 GTEKSKFRDDSGNGTGYPHCYLLSDLDIPGAEDVKKLKALIEDGDDEDEIMVPSKEPVIM 148
Query: 104 ------------YGETYKGKKHLCLITDALCPLKDPDVGTKEDQVST------------- 138
G + L ++TD DP G K+ + S
Sbjct: 149 SNMLFCANQVFTTNAANFGSRRLFIVTDN----DDPHAGDKQAKSSAAVRAKDLYDLGVV 204
Query: 139 -----IARQMVAFGLR-------MKNIVVRASLSGEPHMR-----VIIENDNLLNIFSKK 181
I+R+ F L +N A S P + + N + NI SK+
Sbjct: 205 IELFPISREDKKFDLSKFYDDIIYRNPAAEAGQSESPKTSKSGDGLTLLNSLISNINSKQ 264
Query: 182 SSAKTLFVDSTTSLRGARKTRDISPVTI-FRGDLELSEKMKIK-VWVYKKTGEEKFPTLK 239
+ ++ F + L +TI +G + L+ + + +VY+ GEE+ ++
Sbjct: 265 TPKRSYFSNLPFELAPG--------LTISIKGYMPLNRQTPTRSCYVYE--GEEQAQVVQ 314
Query: 240 KYSDKAPSTDKFATHEVKVDYEYKSVEDPSKVVPPEQRIKGYRYGPQVVPISSAEWEAVK 299
+ +VD+ ++VE + KGY++G + + E +K
Sbjct: 315 -------------SETAQVDFAARTVEK-------SELRKGYKFGGEHICFKPEELAELK 354
Query: 300 FKPEKSVKLLGFTDASNILRHYYM-KDVNLFIAEPGNSRATVAVSALARAMKEMNKVAIV 358
+K+++++GF S I + K + +F +E +T SAL + + + +KV I
Sbjct: 355 QMGKKTLRIIGFKKRSKIPSWASVKKSIFIFPSEEQYVGSTRVFSALWQKLLKDDKVGIA 414
Query: 359 RCVWRQGQQSVVVGVL---TPNVSEKIN--IPDSFYFNVLPFAEDVREFQFPSFSKFPVS 413
V R+ V+V + P+ E +P + LPFA+DVR S
Sbjct: 415 WFVARENAHPVMVAIFPSGNPDDEEANTPYLPAGLWLYPLPFADDVR-----SVDHVTAP 469
Query: 414 WQPNEQQQEAADNLVKMLDLAPSGKGEILQPELTPNPALERFYHHLELKSEHQDAAPPPL 473
+P ++ + +++ L L + + P PNP+L+ Y L+ K+ ++ P +
Sbjct: 470 PRPADELTDQMRQVIQNLQLPKA----MYDPRKYPNPSLQWHYKILQAKALDEE-TPDAM 524
Query: 474 DD 475
DD
Sbjct: 525 DD 526
>sp|Q0U5F2|KU70_PHANO ATP-dependent DNA helicase II subunit 1 OS=Phaeosphaeria nodorum
(strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=KU70 PE=3
SV=1
Length = 652
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 112/559 (20%), Positives = 214/559 (38%), Gaps = 103/559 (18%)
Query: 5 REALLLLLDVSPSMHSVLPDVE--------------KLCSRLIQKKLIYGKNHEVGVILF 50
++A+L +DVSPSM P E K +L+Q+++I N +G++LF
Sbjct: 28 KDAVLFAIDVSPSMLERPPKTEDKKADRDSPTSAALKCAYQLMQQRIISNPNDMMGILLF 87
Query: 51 GTEETENELTKEVGGYEHVKVLQDIKVVDGHLVQSLKHLPQ--------------GTCAG 96
GTE+T+ L ++H +L D+ V V+ L+ L + G
Sbjct: 88 GTEKTD--LKDGDSTFQHCYLLADLDVPSAQDVKRLRDLVEDEEEAEQILKPAKDGASIA 145
Query: 97 DYMLIKKYGETYKG----KKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGL---- 148
+ T K + L L+TD P+ +V +D T AR + G
Sbjct: 146 TVLFCANQIFTTKAPNFSSRRLFLVTDNDYPV---NVKADKDTAVTRARDLYDLGCTIDL 202
Query: 149 -------------RMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTLFVDSTTSL 195
R + +V + +P + + + +K TL +S+
Sbjct: 203 FPISQPDQTFDRSRFYDDLVYPTSPSDPDAPIAVATTTKV---AKSGEGITLLKQLISSI 259
Query: 196 RGARKTRDISPVTIFRGDLELSEKMKIKVWVY---KKTGEEKFPTLKKYSDKAPSTDKFA 252
R +F LEL ++I V Y K+ K + DK
Sbjct: 260 NSKATPRR----ALFSLPLELGPDLRIGVKGYILIKRQEHAKSCYVWVGGDKPQIVSSST 315
Query: 253 THEVKVDYEYKSVEDPSKVVPPEQRIKGYRYGPQVVPISSAEWEAVKFK-PEKSVKLLGF 311
+H +D ++VV + K Y++G + + E ++ + ++++GF
Sbjct: 316 SH---------MADDTARVVEKTELRKAYKFGGDAITFTPDEIIKIRQAFGDPIIRIIGF 366
Query: 312 TDASNI-LRHYYMKDVNLFIAEPGNSRATVAVSALARAMKEMNKVAIVRCVWRQGQQSVV 370
S + + K ++ +E +T SAL + + + K+ +V + R+ ++
Sbjct: 367 KPISCLPIWTNTNKATFIYPSEADFIGSTRVFSALQQKLLKSKKMGLVWFIARRNAAPIL 426
Query: 371 VGVLTPNVSEKIN------IPDSFYFNVLPFAEDVREFQFPSFSKFPVSWQPNEQQQEAA 424
++ E+ N +P + LP+A+D+R+F P+ + + +
Sbjct: 427 SALIP--AEEQTNEDGEQAMPPGLWLVPLPWADDIRQFPSPAADVLKTT----DALTDKM 480
Query: 425 DNLVKMLDLAPSGKGEILQPELTPNPALERFYHHLELKSEHQDAAPPPLDDSLKKITEPD 484
+++ L L P G + P PNP L+ FY L+ + ++ P D ++ K +
Sbjct: 481 RIIIEQLQL-PKG---VYDPAKYPNPDLQWFYRILQAMALEEELPEKPDDKTMPKFRQ-- 534
Query: 485 PTLLAESQSAIDAFCGQFV 503
ID CG+++
Sbjct: 535 ----------IDKRCGEYI 543
>sp|Q6CCK2|KU70_YARLI ATP-dependent DNA helicase II subunit 1 OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=KU70 PE=3 SV=1
Length = 585
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 68/297 (22%), Positives = 124/297 (41%), Gaps = 52/297 (17%)
Query: 223 KVWVYKKTGEEKFPTLKKYSDKAPSTDKFATHEVKVDYEYKSVEDPSKVVPPEQRIKGYR 282
K WVY TG EK P K + V ++E V + R K ++
Sbjct: 266 KAWVY--TGGEK-----------PEIAKLESQAV-------TIESGRSVDKADLR-KTFK 304
Query: 283 YGPQVVPISSAEWEAVKFKPEKSVKLLGF---TDASNILRHYYMKDVNLFIAEPGNSRAT 339
+G VP + + +++ E +++LGF +D S + H + L+ + +
Sbjct: 305 FGNDYVPFTEEQLTQIRYFGEPIIRILGFHNSSDFSELFIHSVRSSMFLYPTDEKLVGSI 364
Query: 340 VAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPNVSEKINIPDSFYFNVLPFAEDV 399
A SAL +++K +K+A+ + R+G + ++ +L P+ E + + LPF +D+
Sbjct: 365 RAFSALYQSLKNKDKMALAWVIVRKGAKP-ILALLIPSTKE----IEGLHMVFLPFTDDI 419
Query: 400 REFQFPSFSKFPVSWQPNEQQQEAADNLVKMLDLAPSGKGEILQPELTPNPALERFYHHL 459
R Q P VS P + +A N+ L + P G + + PNP L+ Y +
Sbjct: 420 R--QEPKTEL--VSAAP--ELVDATKNIFTRLRM-PGG----FESQRYPNPRLQWHYRVV 468
Query: 460 ELKSEHQDAAPPPLDDSLKKITEPDPTLLAESQSAIDAFCGQFVIKENPKLKKSTRR 516
+ ++ P D + K +ID G + + N L+ S++R
Sbjct: 469 RAMALQEEVPKVPEDKTTPKY------------RSIDTRVGDAIEEWNKVLQSSSKR 513
>sp|Q04437|KU80_YEAST ATP-dependent DNA helicase II subunit 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YKU80 PE=1 SV=1
Length = 629
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 59/137 (43%), Gaps = 9/137 (6%)
Query: 279 KGYRYGPQVVPISSAEWEAVKFKPEKSVKLLGFTDASNILRHYYMKDVNLFIAEP--GNS 336
K YRYG V + S + ++ + L GF + + R++ + + A+ G
Sbjct: 315 KAYRYGADYVVLPSVLVDQTVYESFPGLDLRGFLNREALPRYFLTSESSFITADTRLGCQ 374
Query: 337 RATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPNVSEKINIPD------SFYF 390
+A SAL M E K+A+ R V ++ + V + L P + E NI S
Sbjct: 375 SDLMAFSALVDVMLENRKIAVARYVSKKDSE-VNMCALCPVLIEHSNINSEKKFVKSLTL 433
Query: 391 NVLPFAEDVREFQFPSF 407
LPFAED R FP
Sbjct: 434 CRLPFAEDERVTDFPKL 450
>sp|Q1DU75|KU70_COCIM ATP-dependent DNA helicase II subunit 1 OS=Coccidioides immitis
(strain RS) GN=KU70 PE=3 SV=2
Length = 647
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 113/251 (45%), Gaps = 31/251 (12%)
Query: 279 KGYRYGPQVVPISSAEWEAVKFKPEKSVKLLGFTDASNILRHYYMKDVN-LFIAEPGNSR 337
K Y++G + V + E A++ + ++++GF S++ K ++ +E G
Sbjct: 340 KAYKFGGEHVAFTQEEQSALRNFGDPVIRIIGFKPMSSLPIWASTKHSTFIYPSEAGFVG 399
Query: 338 ATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPNVSEKIN------IPDSFYFN 391
+T SAL + + + K A+V V R+ + V+ L P EK++ IP +
Sbjct: 400 STRVFSALQQTLLKQKKFALVWFVARK-NAAPVMAALIPG-EEKLDDNDAQVIPPGMWIQ 457
Query: 392 VLPFAEDVREFQFPSFSKFPVSWQPNEQQQEAADNLVKMLDLAPSGKGEILQPELTPNPA 451
LPFA+D+R Q P V+ +P + ++++L L P G+ P+ PNP+
Sbjct: 458 PLPFADDIR--QNPETHNI-VAPEPLIDKMR---EIIQVLQL-PKGR---YDPQRYPNPS 507
Query: 452 LERFYHHLELKSEHQDAAPPPLDDSLKKITEPDPTLLAESQSAIDAFCGQFVIKENPKLK 511
L+ Y L+ + LD+ L E D T+ Q ID G+ V++ +L+
Sbjct: 508 LQWHYRILQALA---------LDEDLPDQAE-DKTIPKYKQ--IDKRAGEHVLEWGEELE 555
Query: 512 KSTRRFLREKP 522
R KP
Sbjct: 556 TQNRLLENSKP 566
>sp|O94395|KU70_SCHPO ATP-dependent DNA helicase II subunit 1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pku70 PE=1 SV=1
Length = 607
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 101/532 (18%), Positives = 209/532 (39%), Gaps = 102/532 (19%)
Query: 1 MARTREALLLLLDVSPSMHSVLPD-------VEKLCS-RLIQKKLIYGKNHEVGVILFGT 52
A + A+L +++VSPSM + + + +C+ +L +++I + +GV+L+GT
Sbjct: 13 FAIGKYAILFVIEVSPSMLDPVDEFTPSSLQMALICAYQLAAQRVITNPSDIMGVLLYGT 72
Query: 53 EETENELTKEVGGYEHVKVLQDIKVVDGHLVQSLKHLPQG-----------TCAGDY--- 98
E + G + + +L DI D ++SL+ + +C
Sbjct: 73 ESS-------TGRFANQMMLLDIDPPDAERIKSLQSFEKDFQFSKEKFKPCSCQVSLSSV 125
Query: 99 -----MLIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKNI 153
++ E ++ K L LITD P D T+ D + A+ + +++ +
Sbjct: 126 LYHCSVIFTTKAENFE--KRLFLITDNDHPAWD---ATERDIILQRAKDLRDLDIQVHPV 180
Query: 154 VV-------RASLSGEPHMRVIIENDNLLNIFSKKSSAKTLFVDSTTSLRGARKTRDISP 206
+ R ++ + ++ ++ N+ ++ + ++ T+L+ ++
Sbjct: 181 FLDPPTHSFRINIFYSDFLYIVYGRQDVSNLVNRGQAQLQHMLNMITALQKPKRAH---- 236
Query: 207 VTIFRGDLELSEKMKIKVWVYKKTGEEKFPTLKKYSDKAPSTDKFATHEVKVDYEYKSVE 266
F ++L ++I G E F LK+ K ++ Y E
Sbjct: 237 ---FHLKMDLGNDVRI--------GVEAFILLKR------------LESAKTNWVYAKGE 273
Query: 267 DPSKVVPPEQRI--------------KGYRYGPQVVPISSAEWEAVKFKPEKSVKLLGFT 312
+ VP +++ + Y YG V S E V+ +++++GF
Sbjct: 274 RFAVAVPQSKQVSFATKKELKKDEIRRSYSYGGSSVVFGSDELNKVRSFEPPTLRIIGFR 333
Query: 313 DASNILRHYYMKDVNLFIAEPGNSRATVAV-SALARAMKEMNKVAIVRCVWRQGQQSVVV 371
D S + + +K + + AV SA+ + + NK+ I V R V
Sbjct: 334 DFSTLKPWHCLKPAVFLRPKDDEIIGSGAVFSAIHKKLLASNKIGIAWFVSRPNANPCFV 393
Query: 372 GVL-TP---NVSEKINIPDSFYFNVLPFAEDVREFQFPSFSKFPVSWQPNEQQQEAADNL 427
+L TP ++ + +P + LP A+D+R P + P+S N E +
Sbjct: 394 AMLATPGSIHIRDDFELPLGIFLVQLPTADDIRS--LPPINPNPISMPSN--LIETMQRI 449
Query: 428 VKMLDLAPSGKGEILQPELTPNPALERFYHHLELKSEHQDAAPPPLDDSLKK 479
++ ++L QP NP+L+ Y L+ + ++ +D++L K
Sbjct: 450 LRGMELRS------YQPGKYNNPSLQWHYKVLQALALDEEIPTDFVDNTLPK 495
>sp|Q5AVC7|KU70_EMENI ATP-dependent DNA helicase II subunit 1 OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=ku70 PE=3 SV=1
Length = 629
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 113/254 (44%), Gaps = 31/254 (12%)
Query: 279 KGYRYGPQVVPISSAEWEAVKFKPEKSVKLLGFTDASNILRHYYMKD-VNLFIAEPGNSR 337
K Y++G V + E +++K E ++++GF S + +K + ++ E
Sbjct: 318 KAYKFGGDQVCFTPEEQKSLKDFGEPVIRIIGFKPLSTLPFWANIKHPLFIYPTEEDYVG 377
Query: 338 ATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPNVSEKIN------IPDSFYFN 391
+T SAL + + KVA+V + R+ S V+G + EK++ IP +
Sbjct: 378 STRVFSALYQKLLRDQKVALVWYIARKAA-SPVLGAMMAG-EEKVDENGIQKIPPGMWII 435
Query: 392 VLPFAEDVREFQFPSFSKFPVSWQPNEQQQEAADNLVKMLDLAPSGKGEILQPELTPNPA 451
LPFA+DVR Q P + V+ +P Q +++ L L P G + P+ PNP+
Sbjct: 436 PLPFADDVR--QNPE-TALQVAPEPLIDQMR---TVIQQLQL-PKG---VYDPQKYPNPS 485
Query: 452 LERFYHHLELKSEHQDAAPPPLDDSLKKITEPDPTLLAESQSAIDAFCGQFVIKENPKLK 511
L+ Y L+ + +D P D ++ K + ID G +V+ +L+
Sbjct: 486 LQWHYRILQALALDEDVPEKPDDKTIPKYRQ------------IDKRAGGYVLDWADELE 533
Query: 512 KSTRRFLREKPSGS 525
K + ++P +
Sbjct: 534 KQYAKITADQPKST 547
>sp|Q2MHH4|KU70_ASPOR ATP-dependent DNA helicase II subunit 1 OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) GN=ku70 PE=3 SV=1
Length = 655
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 125/591 (21%), Positives = 231/591 (39%), Gaps = 117/591 (19%)
Query: 5 REALLLLLDVSPSMHSVLPDVE--------------KLCSRLIQKKLIYGKNHEVGVILF 50
++A+L ++VS SM + P + K L+Q+++I +GV+L+
Sbjct: 29 KDAVLFAIEVSDSMLTPRPSSDSKKPAEESPTTAALKCAYYLMQQRIISNPRDMIGVLLY 88
Query: 51 GTEET----ENELTKEVGGYEHVKVLQDIKVVDGHLVQSLKHLPQ-GTCAGDYMLIKKYG 105
GT+ + E+E ++ Y H + D+ V V++L+ L Q G + D ++K G
Sbjct: 89 GTQASKFYDEDENSRGDLSYPHCYLFTDLDVPSAQEVKNLRALAQDGDESKD--VLKASG 146
Query: 106 E---------------TYKG----KKHLCLITDALCPLKDPDVGTKEDQVSTI-ARQMVA 145
E T K + L ++TD P D ST+ A+ +
Sbjct: 147 ERVSMANVLFCANQIFTSKAPNFLSRRLFIVTDNDDPHGD---NKSLRSASTVRAKDLYD 203
Query: 146 FGLRMK------------------NIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTL 187
G+ ++ +I+ +AS S +P ++ D SK S A
Sbjct: 204 LGVTIELFPISRPGHEFDTARFYDDIIYKASPS-DPDAPAYLQTD------SKASPATGD 256
Query: 188 FVDSTTSLRGARKTRDISPVTIFRG-DLELSEKMKIKVWVY-----KKTGEEKFPTLKKY 241
+ +L +R + F LEL +KI V Y + F L
Sbjct: 257 GISLLNTLLSNINSRSVPRRAQFSNIPLELGPNLKISVSGYLLFKRQAPARNSFIWL--- 313
Query: 242 SDKAPSTDKFATHEVKVDYEYKSVEDPSKVVPPEQRIKGYRYGPQVVPISSAEWEAVKFK 301
+ P K T ++ +D ++ + + K Y++G V + E ++++
Sbjct: 314 GGEQPQIVKGVTTQI--------ADDTARTIEKWEIKKAYKFGGDQVAFTPEEMKSLRNF 365
Query: 302 PEKSVKLLGFTDASNILRHYYMKDVN-LFIAEPGNSRATVAVSALARAMKEMNKVAIVRC 360
+ ++++GF S + +K + ++ +E +T SAL + + K A+V
Sbjct: 366 GDPVIRIIGFKPLSALPFWANIKHPSFIYPSEEDFVGSTRVFSALHQTLLRDKKAALVWF 425
Query: 361 VWRQGQQSVVVGVLTPNVSEKIN------IPDSFYFNVLPFAEDVREFQFPSFSKFPVSW 414
+ R+ S V+G + EK++ P + LPFA+DVR Q P + V+
Sbjct: 426 IARKNA-SPVLGAMVAG-EEKLDESGVQKFPPGMWIIPLPFADDVR--QNPE-TTLHVAP 480
Query: 415 QPNEQQQEAADNLVKMLDLAPSGKGEILQPELTPNPALERFYHHLELKSEHQDAAPPPLD 474
+P Q +V+ L L + P PNP+L+ Y L+ + +D P D
Sbjct: 481 EPLIDQMRY---IVQQLQLPKAS----YDPFKYPNPSLQWHYRILQALALDEDLPEKPED 533
Query: 475 DSLKKITEPDPTLLAESQSAIDAFCGQFVIKENPKLKKSTRRFLREKPSGS 525
+L + + ID G +V+ +L+K + P +
Sbjct: 534 KTLPRYRQ------------IDKRTGDYVLSWADELEKQYAKISAHGPKST 572
>sp|A5G742|Y3454_GEOUR Probable DNA repair protein Gura_3454 OS=Geobacter uraniireducens
(strain Rf4) GN=Gura_3454 PE=3 SV=1
Length = 261
Score = 42.7 bits (99), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 9/111 (8%)
Query: 270 KVVPPEQRIKGYRYGP-QVVPISSAEWEAVKFKPEKSVKLLGFTDASNILRHYYMKDVNL 328
K+VPP++ I+GY GP + +PI+ E E+V + ++++++ F D + + YY L
Sbjct: 55 KMVPPDEIIRGYEIGPDRYLPITDEELESVSPERSRTIEIVEFIDMNEVDPIYYDHPYYL 114
Query: 329 FIAEPGNSRATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVV----GVLT 375
+ G A L M+ NK + + V + + V V G LT
Sbjct: 115 VPLKGGEK----AYRLLVEVMRRTNKAGLAKFVLAEREYLVAVKSTEGALT 161
>sp|Q26228|KU70_RHIAP ATP-dependent DNA helicase 2 subunit 1 OS=Rhipicephalus
appendiculatus GN=ku70 PE=2 SV=1
Length = 600
Score = 42.4 bits (98), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 100/481 (20%), Positives = 179/481 (37%), Gaps = 66/481 (13%)
Query: 45 VGVILFGTEETENELTKEVGGYEHVKVLQDIKVVDGHLVQSLKHLPQGTCAGDYMLIKKY 104
VG+ILFGT++ N +++V VLQD++ V L+ L G ++Y
Sbjct: 72 VGIILFGTDKDNNP-----NRFKNVYVLQDLESPGAESVLKLEKL---IADGPKKFKQEY 123
Query: 105 G------------------ETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAF 146
G ++ G++ + ++T+ P K G +D+ A+ ++
Sbjct: 124 GHGNVNMADVLWTCALMFSKSRAGQRRVLVLTNQDDPHKGS--GDLDDKAVVKAKDLLQS 181
Query: 147 GLRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTLFVDSTTSLRGARKTRDISP 206
G+ + +V G+ R I NL+ D L + +D
Sbjct: 182 GIELD--LVHLKPPGDKKFRPQILYKNLVTDKENYEDGFPEASDKMEELLLRVRMKDHKK 239
Query: 207 VTIFRGDLELSEKMKIKVWVYKKTGEEKFPTLKKYSDKAPSTDKFA--THEVKVDYEYKS 264
+ L ++K+ V +Y PT K P+T + A +E +
Sbjct: 240 RRLMSLPFWLGPEVKMSVSLYNLVR----PTGK------PATTRLARDNNEELLSRRITY 289
Query: 265 VEDPSKVVPPEQRIKGYRYGPQVVPISSAEWEAVKFKPEKSVKLLGFTDASNILRHYYMK 324
D ++ + P K YG + E + +K ++LLGF S + + +++
Sbjct: 290 AMDSAEALMPGDISKTQEYGGRKAYFDICEVKQIKSMAPPGLQLLGFKPLSYLEKQPHVR 349
Query: 325 DVNLFIAEPGNSRATVAVSALARAMKEMNKVAIVRCVW--RQGQQSVVVGVLTPNVSEKI 382
+ + G+ R + + A ++VA + C W R Q +V +L
Sbjct: 350 PSHFVYPDEGSVRGSTRLFAALLQSCLRHRVAPI-CFWISRAAQAPKLVYLLAQEEERDP 408
Query: 383 N----IPDSFYFNVLPFAEDVREFQFPSFSKFPVSWQPNEQQQEAADNLVKMLDLAPSGK 438
+ +P F+ LPF++D R Q E +A LV +
Sbjct: 409 HGLQMVPPGFHVVQLPFSDDRRRLQ-----------ALQEGTTKATPGLVALAREMAEKL 457
Query: 439 GEILQPELTPNPALERFYHHLELKSEHQDAAPPPLDDSLKKITEPD-PTLLAESQSAIDA 497
P+ NP L+ F+ LE + +D A P K T PD + A++ +DA
Sbjct: 458 RFTYHPDKFENPELQGFWSCLEALALDRDDAEHP-----KDYTRPDHEKMKAKAGEEMDA 512
Query: 498 F 498
F
Sbjct: 513 F 513
>sp|Q2H0I3|KU70_CHAGB ATP-dependent DNA helicase II subunit 1 OS=Chaetomium globosum
(strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 /
NRRL 1970) GN=KU70 PE=3 SV=1
Length = 622
Score = 42.0 bits (97), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 16/101 (15%)
Query: 5 REALLLLLDVSPSM--------------HSVLPDVEKLCSRLIQKKLIYGKNHEVGVILF 50
++A+L +DVS SM S + K + +Q+++I +G++LF
Sbjct: 29 KDAVLFAIDVSSSMLQQPPATDKKRADKDSAIAAALKCAYQFMQQRIIAQPKDMMGILLF 88
Query: 51 GTEET--ENELTKEVGGYEHVKVLQDIKVVDGHLVQSLKHL 89
GTE++ +E+ GY H + D+ V V+SLK L
Sbjct: 89 GTEKSRFRDEVGGRSSGYPHCYLFTDLDVPAAEDVKSLKAL 129
Score = 38.5 bits (88), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 73/334 (21%), Positives = 138/334 (41%), Gaps = 49/334 (14%)
Query: 265 VEDPSKVVPPEQRIKGYRYGPQVVPISSAEWEAVKFKPEKSVKLLGFTDASNILRHYYMK 324
V+ ++ V + K Y++G E + FKPE++ L +LR K
Sbjct: 320 VDSATRTVDKSEVKKAYKFG----------GEYIHFKPEEAASLKNL--GGKVLRVIGFK 367
Query: 325 DVNLFIAEPGNSRATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPNV-----S 379
+L + A+V S +E V R+ ++V ++ S
Sbjct: 368 PRSLL-----PTWASVKKSIFIFPSEEH----FVGSTPRENANPIMVAIIPSRAMDDETS 418
Query: 380 EKINIPDSFYFNVLPFAEDVREFQFPSFSKFPVSWQPNEQQQEAADNLVKMLDLAPSGKG 439
E +P + LPFA+DVR + + P ++ + +V+ L L +
Sbjct: 419 ETPYLPAGLWLYPLPFADDVRNVDLAAPPR------PADELTDKMREIVQNLQLPKA--- 469
Query: 440 EILQPELTPNPALERFYHHLELKSEHQDAAPPPLDDS----LKKITEPDPTLLAESQSAI 495
+ P PNP+L+ Y L+ + +D P LDD+ ++I + LAE + A+
Sbjct: 470 -MYNPLKYPNPSLQWHYKVLQAMALDED-VPEALDDATIPKYRQIDKRVGGYLAEWKEAL 527
Query: 496 DAFCGQFV----IKENPKLKKSTRRFL-REKPSGSDEPNGDGSVSDAQAVNSMESKPV-- 548
G + +K + + +R R KP+ E G G +S+AQ ++E +
Sbjct: 528 TEKAGGLMKSRAMKREAEDEDVSRPLAKRTKPAAPKEAAG-GHMSNAQLKAALEQDTLKK 586
Query: 549 VTVDKIGDLTPIQDFEAMMSRRDCPDWVDKAIED 582
+TV ++ D+ + A+ + + D +++ IE+
Sbjct: 587 MTVAELKDVLASKGVSAVGKKAELVDKLEQWIEE 620
>sp|A9KS68|Y1728_CLOPH Probable DNA repair protein Cphy_1728 OS=Clostridium
phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)
GN=Cphy_1728 PE=3 SV=1
Length = 257
Score = 41.2 bits (95), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 20/164 (12%)
Query: 270 KVVPPEQRIKGYRYGP-QVVPISSAEWEAVKFKPEKSVKLLGFTDASNILRHYYMKDVNL 328
K V E +KGY Y + V I+ E E +K + EKS+++L F + I YY K
Sbjct: 52 KEVKTEDIVKGYEYDDDKYVVITDEEIEKIKTEKEKSIQILHFAQLNQISPVYYEKTYQA 111
Query: 329 FIAEPGNSRATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPNVSEKINIPDSF 388
+ E G + A L A+ K+AI + V G + ++ ++ P D
Sbjct: 112 -VPETGGEK---AFELLRSALMAEQKIAIGKTVM--GTKDTLMAII-PR-------EDGI 157
Query: 389 YFNVLPFAEDVREFQFPSFSKFPVSWQPNEQQQEAADNLVKMLD 432
+ + +A+D++ Q ++K V NEQ+ A L+ +D
Sbjct: 158 LISTMFYADDIKAIQ-KQYTKPEV----NEQEFNMAKLLINSMD 196
>sp|P32807|KU70_YEAST ATP-dependent DNA helicase II subunit 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YKU70 PE=1 SV=2
Length = 602
Score = 40.4 bits (93), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 45/221 (20%), Positives = 99/221 (44%), Gaps = 25/221 (11%)
Query: 278 IKGYRYGPQVVPISSAEWEAV---KFKPEKSVKLLGFTDASNILRHYYMKDVNLFIAEPG 334
+K Y YG + +S ++ + V + + +K++GF +S + ++ D + FI P
Sbjct: 332 VKVYPYGDLDINLSDSQDQIVMEAYTQKDAFLKIIGFRSSSKSIHYFNNIDKSSFIV-PD 390
Query: 335 NSRATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPNVSEKINIPDSFYFNVLP 394
++ ++ LA +K + K + +W + + + + T + S + + FY +P
Sbjct: 391 EAKYEGSIRTLASLLKILRKKDKIAILWGKLKSNSHPSLYTLSPSSVKDYNEGFYLYRVP 450
Query: 395 FAEDVREFQFPSFSKFPVSWQPNEQQQEAADNLVKMLD--LAPSGKGEILQPELTPNPAL 452
F +++R +FPS +S+ + + DN+ K+ + + P NP L
Sbjct: 451 FLDEIR--KFPSL----LSYDDGSEHKLDYDNMKKVTQSIMGYFNLRDGYNPSDFKNPLL 504
Query: 453 ERFY-----HHLELKSEHQDAAPPPL--------DDSLKKI 480
++ Y + L++++ + P DDSL+K+
Sbjct: 505 QKHYKVLHDYLLQIETTFDENETPNTKKDRMMREDDSLRKL 545
>sp|Q6CUB4|KU70_KLULA ATP-dependent DNA helicase II subunit 1 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=KU70 PE=3 SV=1
Length = 592
Score = 38.5 bits (88), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 83/194 (42%), Gaps = 17/194 (8%)
Query: 270 KVVPPEQRIKGYRYGPQVVPISSAEWEAVKF---KPEKSVKLLGFTDASNILRHYYMKDV 326
+ V Q K Y +G +++ ++ E ++ + E +KL+GF L +Y DV
Sbjct: 327 EAVDNSQLSKVYTFGDEIIELTEDENLKIQSGYSEHESFLKLIGFRSTEQCLHYYDNIDV 386
Query: 327 NLFIA--EPGNSRATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPNVSEKINI 384
F+ E + + +++L R M K A+V R + VLTP S K +
Sbjct: 387 PAFVVPNEEDYAGSIKTLASLYRTMLFKKKSAMVWGKLRPNSPPSMF-VLTP--SSKKDY 443
Query: 385 PDSFYFNVLPFAEDVREFQFPSFSKFPVSWQPNEQQ--QEAADNLVKMLDLAPSGKGEIL 442
FY +PF E+VR + P F + ++ + + + L+ +L
Sbjct: 444 NQGFYLYKVPFMEEVR--KLPDFLNHSALIESDDYKVMSKVTETLINFFNLKNG-----Y 496
Query: 443 QPELTPNPALERFY 456
+P NPAL++ +
Sbjct: 497 RPSDFHNPALQKHF 510
>sp|B8FRH5|Y3719_DESHD Probable DNA repair protein Dhaf_3719 OS=Desulfitobacterium
hafniense (strain DCB-2 / DSM 10664) GN=Dhaf_3719 PE=3
SV=1
Length = 285
Score = 38.5 bits (88), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 19/149 (12%)
Query: 253 THEVKVDYEYKSVEDPSKV----------VPPEQRIKGYRY-GPQVVPISSAEWEAVKFK 301
THE +Y +K + + V E IKGY Y V + + +++
Sbjct: 26 THEFHFNYLHKDCHNRIRYIKKCPHCEVEVAAENIIKGYEYEKDHYVIMEEEDLASLEAP 85
Query: 302 PEKSVKLLGFTDASNILRHYYMKDVNLFIAEPGNSRATVAVSALARAMKEMNKVAIVRCV 361
+S+ +L F D S+I YY K L E + A L +AM + KVAI +
Sbjct: 86 LSRSIDILDFIDLSDIDPIYYQKSYYLSPEEAAHK----AYKLLCQAMSDTGKVAIAKLT 141
Query: 362 WRQGQQSVVVGVLTPNVSEKINIPDSFYF 390
R Q + + + + I + ++ Y+
Sbjct: 142 MRSKQHLACLRI----IDQSIMVLETMYY 166
>sp|O34859|YKOV_BACSU Probable DNA repair protein YkoV OS=Bacillus subtilis (strain 168)
GN=ykoV PE=2 SV=1
Length = 311
Score = 38.5 bits (88), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 92/203 (45%), Gaps = 23/203 (11%)
Query: 189 VDSTTSLRGARKTRDISPVTIFRGDLELS-EKMKIKVWVYKKTGEEKFPTLKKYSDKAPS 247
++ T SL K I T+++G + + IK++ + + K +L K D AP
Sbjct: 1 MNRTPSLHTKEKKGFIDMHTMWKGSISFGLVNIPIKLYAATEDKDIKLRSLHK-EDHAP- 58
Query: 248 TDKFATHEVKVDYEYKSVEDPSKVVPPEQRIKGYRY--GPQVVPISSAEWEAVKFK-PEK 304
+ YE K + K + P++ +KGY Y G VV ++ + +++K + EK
Sbjct: 59 ----------IKYE-KVCTNCEKTLSPDEIVKGYEYVKGKYVV-LTDEDLKSLKQEHEEK 106
Query: 305 SVKLLGFTDASNILRHYYMKDVNLFIAEPGNSRATVAVSALARAMKEMNKVAIVRCVWRQ 364
+V+++ F I Y+ + + PG++ T A + L A++ K+ I R
Sbjct: 107 AVEIVDFVQLQEIDPIYFNRS---YFVGPGDN-GTKAYTLLREALRSTGKIGIANMTIRS 162
Query: 365 GQQSVVVGVLTPN-VSEKINIPD 386
QQ ++ V V E I+ PD
Sbjct: 163 KQQLAILRVYENCIVMESIHYPD 185
>sp|Q7F1M0|KU70_ORYSJ ATP-dependent DNA helicase 2 subunit KU70 OS=Oryza sativa subsp.
japonica GN=KU70 PE=1 SV=1
Length = 624
Score = 38.1 bits (87), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 90/212 (42%), Gaps = 23/212 (10%)
Query: 274 PEQRIKGYRYGPQVVPISSAEWEAVKFKPEKSVKLLGFTDASNILRHYYMKDVNLFIAEP 333
P++R + Y ++V S+ E VK ++LLGF + L+ Y+ + FI
Sbjct: 322 PQKRFQ--VYNDKIVKFSTRELSDVKRVSSHHLRLLGFKPL-DYLKDYHNLRPSTFIYPS 378
Query: 334 -----GNSRATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPNVSEKINI-PDS 387
G++R VA L +M+ + + A+ Q V + S I P
Sbjct: 379 DEQIFGSTRVFVA---LHSSMRRLGRFALAFYGNPTRPQLVALIAQEEVTSAGGQIEPPG 435
Query: 388 FYFNVLPFAEDVREFQFPSFSKFPVSWQP--NEQQQEAADNLVKMLDLAPSGKGEILQPE 445
+ LP+++DVR +P P ++Q + A NL++ +DL +
Sbjct: 436 IHMIYLPYSDDVR---YPEEVHLTSDDAPRATDEQIKKASNLLRRIDLKNFSVCQF---- 488
Query: 446 LTPNPALERFYHHLELKSEHQDAAPPPLDDSL 477
NPAL+R Y LE + +D P D++L
Sbjct: 489 --SNPALQRHYGILEALALGEDEMPDVKDETL 518
>sp|Q2MHH3|KU70_ASPSO ATP-dependent DNA helicase II subunit 1 OS=Aspergillus sojae
GN=ku70 PE=3 SV=1
Length = 655
Score = 37.7 bits (86), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 18/105 (17%)
Query: 5 REALLLLLDVSPSMHSVLPDVE--------------KLCSRLIQKKLIYGKNHEVGVILF 50
++A+L ++VS SM + P + K L+Q+++I +GV+L+
Sbjct: 29 KDAVLFAIEVSDSMLTPRPSSDSKKPAEESPTTAALKCAYHLMQQRIISNPRDMIGVLLY 88
Query: 51 GTEET----ENELTKEVGGYEHVKVLQDIKVVDGHLVQSLKHLPQ 91
GT+ + E+E ++ Y H + D+ V V++L+ L Q
Sbjct: 89 GTQASKFYDEDENSRGDLSYPHCYLFTDLDVPSAQEVKNLRALAQ 133
Score = 36.2 bits (82), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 107/254 (42%), Gaps = 31/254 (12%)
Query: 279 KGYRYGPQVVPISSAEWEAVKFKPEKSVKLLGFTDASNILRHYYMKDVN-LFIAEPGNSR 337
K Y++G V + E ++++ + ++++GF S + +K + ++ +E
Sbjct: 343 KAYKFGGDQVAFTPEEMKSLRNFGDPVIRIIGFKPLSALPFWANIKHPSFIYPSEEDFVG 402
Query: 338 ATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPNVSEKIN------IPDSFYFN 391
+T SAL + + K A+V + R+ S V+G + EK++ P +
Sbjct: 403 STRVFSALHQTLLRDKKAALVWFIARKNA-SPVLGAMVAG-EEKLDESGVQKFPPGMWII 460
Query: 392 VLPFAEDVREFQFPSFSKFPVSWQPNEQQQEAADNLVKMLDLAPSGKGEILQPELTPNPA 451
LPFA+DVR Q P + V+ +P Q +V+ L L + P PNP+
Sbjct: 461 PLPFADDVR--QNPE-TTLHVAPEPLIDQMR---YIVQQLQLPKAS----YDPFKYPNPS 510
Query: 452 LERFYHHLELKSEHQDAAPPPLDDSLKKITEPDPTLLAESQSAIDAFCGQFVIKENPKLK 511
L+ Y L+ + +D P D +L + + ID G +V+ +L+
Sbjct: 511 LQWHYRILQALALDEDLPEKPEDKTLPRYRQ------------IDKRTGDYVLSWADELE 558
Query: 512 KSTRRFLREKPSGS 525
K + P +
Sbjct: 559 KQYAKISAHGPKST 572
>sp|O93257|XRCC6_CHICK X-ray repair cross-complementing protein 5 OS=Gallus gallus
GN=XRCC6 PE=2 SV=1
Length = 632
Score = 37.4 bits (85), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 79/193 (40%), Gaps = 20/193 (10%)
Query: 274 PEQRIKGYRYGPQVVPISSAEWEAVKFKPEKSVKLLGFTDASNILRHYYMKDVNLFIAEP 333
P + YG + + + E E VK + L+GF S + +H++++ E
Sbjct: 335 PSDTKRAQTYGNRQIAMEKEETEEVKRFDSPGLFLIGFKPLSMLKQHHHIRPSQFMYPEE 394
Query: 334 G-NSRATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVLTPNVSE----KINI-PDS 387
+ +T +AL E +A+ R + R+ +V L P E K+ I P
Sbjct: 395 SLVTGSTTLFNALLMKCLEKEVMALCRYIARRNTPPRIVA-LIPQEEEVDEQKVQIAPPG 453
Query: 388 FYFNVLPFAEDVREFQFPSFSKFPVSWQPNEQQQEAADNLVKMLDLAPSGKGEILQPELT 447
F+ LP+A+D R F K P N +Q + +++ L + +
Sbjct: 454 FHIIFLPYADDKRNVDFT--EKVPA----NREQVDKMKGIIQKLRFK-------YRTDSF 500
Query: 448 PNPALERFYHHLE 460
NP L++ + +LE
Sbjct: 501 ENPVLQQHFRNLE 513
>sp|P0CO50|KU70_CRYNJ ATP-dependent DNA helicase II subunit 1 OS=Cryptococcus neoformans
var. neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=KU70 PE=3 SV=1
Length = 560
Score = 36.6 bits (83), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 75/190 (39%), Gaps = 24/190 (12%)
Query: 290 ISSAEWEAVKFKPEKSVKLLGFTDASNI-----LRHYYMKDVNLFIAEPGNSRATVAVSA 344
++S +W + +K+LGF AS + L+H + ++ E + +T +A
Sbjct: 275 LNSGQWGS------NPIKVLGFQAASQLRFQDNLKHPFF----IYPNEEEYTGSTRTFAA 324
Query: 345 LARAMKEMNKVAIVRCVWRQGQQSVVVGVLTP----NVSEKINIPDSFYFNVLPFAEDVR 400
L + + N+ A+ C R VL P S P F+ +LP+ + +R
Sbjct: 325 LLNSCLKYNRHALALCRLRSNHVPEFC-VLIPQEEKTSSNGQEYPPGFHLIILPYKDSIR 383
Query: 401 EFQFPSFSKFPVSWQPNEQQQEAADNLVKMLDLAPSGKGEILQPELTPNPALERFYHHLE 460
P K Q + N +K + K +PE+ PNP+L Y L+
Sbjct: 384 ----PPPKKVAEFLQSPPIATDEQINAMKAVIKRTRFKAAAYRPEIYPNPSLAYHYDQLQ 439
Query: 461 LKSEHQDAAP 470
+ +D P
Sbjct: 440 ALAFEEDWDP 449
>sp|P0CO51|KU70_CRYNB ATP-dependent DNA helicase II subunit 1 OS=Cryptococcus neoformans
var. neoformans serotype D (strain B-3501A) GN=KU70 PE=3
SV=1
Length = 560
Score = 36.6 bits (83), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 75/190 (39%), Gaps = 24/190 (12%)
Query: 290 ISSAEWEAVKFKPEKSVKLLGFTDASNI-----LRHYYMKDVNLFIAEPGNSRATVAVSA 344
++S +W + +K+LGF AS + L+H + ++ E + +T +A
Sbjct: 275 LNSGQWGS------NPIKVLGFQAASQLRFQDNLKHPFF----IYPNEEEYTGSTRTFAA 324
Query: 345 LARAMKEMNKVAIVRCVWRQGQQSVVVGVLTP----NVSEKINIPDSFYFNVLPFAEDVR 400
L + + N+ A+ C R VL P S P F+ +LP+ + +R
Sbjct: 325 LLNSCLKYNRHALALCRLRSNHVPEFC-VLIPQEEKTSSNGQEYPPGFHLIILPYKDSIR 383
Query: 401 EFQFPSFSKFPVSWQPNEQQQEAADNLVKMLDLAPSGKGEILQPELTPNPALERFYHHLE 460
P K Q + N +K + K +PE+ PNP+L Y L+
Sbjct: 384 ----PPPKKVAEFLQSPPIATDEQINAMKAVIKRTRFKAAAYRPEIYPNPSLAYHYDQLQ 439
Query: 461 LKSEHQDAAP 470
+ +D P
Sbjct: 440 ALAFEEDWDP 449
>sp|Q54MA9|KU70_DICDI ATP-dependent DNA helicase ku70 OS=Dictyostelium discoideum GN=ku70
PE=3 SV=1
Length = 909
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 274 PEQRIKGYRYGPQVVPISSAEWEAVKFKPEKSVKLLGFTDASNILRHYYMKDVNLFIAEP 333
P Q Y YG + V + E + +K LLGF NI ++ +K +
Sbjct: 373 PSQIKLCYHYGGEPVIFTKDEMQTIKSIDRIGFTLLGFKPLENIKPYHSIKHSQFIFPDD 432
Query: 334 GNSRATV-AVSALARAMKEMNKVAIVRCVWRQGQQSVVVGVL 374
+ + +V A +AL M + K AI R R +V ++
Sbjct: 433 QSIKGSVLAFNALVEQMLKSGKAAICRFTPRSSSSPRMVALI 474
>sp|A4FFJ9|Y3550_SACEN Probable DNA repair protein SACE_3550 OS=Saccharopolyspora
erythraea (strain NRRL 23338) GN=SACE_3550 PE=3 SV=1
Length = 324
Score = 33.9 bits (76), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 73/184 (39%), Gaps = 17/184 (9%)
Query: 278 IKGYRYGPQVVPISSAEWEAVKFKPEKSVKLLGFTDASNILRHYYMKDVNLFIAEPGNSR 337
+KG G +V + +E + + K +++ + F D + I Y+ K + PG+
Sbjct: 62 VKGREVGGVLVAVEPSELDEIAPKLSRTIDINTFVDLNAIDPVYFQK---TYWLAPGSKE 118
Query: 338 ATVAVSALARAMKEMNKVAIVRCVWRQGQQSVVV----GVLTPNV---SEKINIPDSFYF 390
+ L RAM E N+V I V R + V VL N +++I P
Sbjct: 119 HFRPYNLLRRAMDETNQVGIATFVMRGREYLTAVRAEDSVLALNTMFFADEIRDPGELVG 178
Query: 391 NVLPFAE-DVREFQFPSF--SKFPVSWQPNEQQQEAADNLVKMLDLAPSGKGEILQPELT 447
+ A+ +E Q + W+P + + + K+L+ G+ PE+
Sbjct: 179 DASSVAKPSDKEIQMATMIIESMSGDWEPEQYEDTYTARVEKLLEDKAEGRA----PEVE 234
Query: 448 PNPA 451
PA
Sbjct: 235 EAPA 238
>sp|Q54873|HYSA_STRPN Hyaluronate lyase OS=Streptococcus pneumoniae serotype 4 (strain
ATCC BAA-334 / TIGR4) GN=SP_0314 PE=1 SV=2
Length = 1066
Score = 32.7 bits (73), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 561 QDFEAMMSRRDCPDWVDKAIEDMKNKIFGLLENSNEGINYPKAVELLVALRKGCILEQEP 620
QD + + RD +W+ K + + + I G + G P+A+ ++L K ++E
Sbjct: 378 QDETVVRTVRDSMEWMHKHVYNSEKSIVGNWWDYEIGT--PRAINNTLSLMKEYFSDEEI 435
Query: 621 KQFNDVLEKVC 631
K++ DV+EK
Sbjct: 436 KKYTDVIEKFV 446
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 255,380,011
Number of Sequences: 539616
Number of extensions: 11123764
Number of successful extensions: 29270
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 29147
Number of HSP's gapped (non-prelim): 84
length of query: 682
length of database: 191,569,459
effective HSP length: 124
effective length of query: 558
effective length of database: 124,657,075
effective search space: 69558647850
effective search space used: 69558647850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)