Query 005694
Match_columns 682
No_of_seqs 235 out of 1408
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 04:49:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005694.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005694hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jey_B KU80; double-strand DNA 100.0 1.5E-82 5E-87 724.5 52.5 496 1-518 1-551 (565)
2 1jey_A KU70; double-strand DNA 100.0 1.4E-76 4.7E-81 679.3 46.2 466 3-513 33-541 (609)
3 1rw2_A ATP-dependent DNA helic 100.0 2.4E-37 8.3E-42 287.2 12.9 131 544-678 22-152 (152)
4 1q2z_A ATP-dependent DNA helic 100.0 6.8E-37 2.3E-41 275.1 11.8 120 555-677 1-120 (120)
5 3ism_C CG4930; endonuclease, e 99.6 3.1E-16 1.1E-20 155.5 9.3 124 551-675 24-160 (359)
6 3ism_C CG4930; endonuclease, e 99.2 7.7E-12 2.6E-16 124.3 6.9 123 552-675 211-345 (359)
7 4b4t_W RPN10, 26S proteasome r 99.0 2.8E-09 9.7E-14 108.5 16.1 149 5-184 3-163 (268)
8 2x5n_A SPRPN10, 26S proteasome 98.9 3E-08 1E-12 96.6 15.0 146 5-183 2-160 (192)
9 3ibs_A Conserved hypothetical 98.7 1.1E-07 3.8E-12 93.9 14.6 158 5-191 11-197 (218)
10 2b2x_A Integrin alpha-1; compu 98.5 9.7E-07 3.3E-11 87.7 14.7 161 6-192 23-197 (223)
11 1q0p_A Complement factor B; VO 98.5 2.9E-06 1E-10 83.7 17.4 160 5-195 15-208 (223)
12 1ijb_A VON willebrand factor; 98.5 2.2E-06 7.6E-11 83.8 15.8 154 6-191 14-180 (202)
13 1pt6_A Integrin alpha-1; cell 98.5 2.4E-06 8.1E-11 84.2 15.6 161 5-192 7-182 (213)
14 4hqo_A Sporozoite surface prot 98.4 2.6E-06 8.7E-11 87.3 13.7 153 6-192 19-192 (266)
15 4hqf_A Thrombospondin-related 98.4 3.1E-06 1E-10 87.3 13.4 143 5-181 21-180 (281)
16 3n2n_F Anthrax toxin receptor 98.3 4.3E-06 1.5E-10 80.1 13.1 149 6-191 8-168 (185)
17 1v7p_C Integrin alpha-2; snake 98.3 1.3E-05 4.3E-10 78.1 15.8 154 5-185 6-173 (200)
18 1atz_A VON willebrand factor; 98.3 1.3E-05 4.4E-10 77.2 14.9 144 5-184 5-161 (189)
19 2xgg_A Microneme protein 2; A/ 98.3 1.1E-05 3.9E-10 77.0 14.3 130 5-157 17-161 (178)
20 1n3y_A Integrin alpha-X; alpha 98.3 4.4E-06 1.5E-10 81.0 11.5 157 5-192 9-179 (198)
21 1shu_X Anthrax toxin receptor 98.3 6.9E-06 2.4E-10 78.3 12.6 147 5-187 6-162 (182)
22 4fx5_A VON willebrand factor t 98.2 1.6E-05 5.4E-10 87.9 16.6 153 5-193 77-244 (464)
23 1rrk_A Complement factor B; BB 98.2 1.3E-05 4.5E-10 89.2 15.1 154 7-194 3-193 (497)
24 2odp_A Complement C2; C3/C5 co 98.2 7.8E-06 2.7E-10 91.4 12.4 159 5-193 9-200 (509)
25 1mf7_A Integrin alpha M; cell 98.1 1.4E-05 4.8E-10 77.3 10.8 157 5-192 5-175 (194)
26 3hrz_D Complement factor B; se 98.1 2.8E-05 9.7E-10 91.0 14.9 156 7-192 245-433 (741)
27 2x31_A Magnesium-chelatase 60 97.9 6.8E-07 2.3E-11 86.3 -1.8 158 5-191 5-173 (189)
28 3zqk_A VON willebrand factor; 97.9 3.2E-05 1.1E-09 75.3 8.7 134 6-180 22-169 (199)
29 1mjn_A Integrin alpha-L; rossm 97.5 0.00036 1.2E-08 66.5 9.8 148 6-191 3-164 (179)
30 3k6s_A Integrin alpha-X; cell 97.4 0.00017 5.7E-09 87.7 7.8 147 7-184 132-291 (1095)
31 2nvo_A RO sixty-related protei 97.3 0.0018 6E-08 72.8 13.3 154 6-186 363-534 (535)
32 1yvr_A RO autoantigen, 60-kDa 97.0 0.0053 1.8E-07 69.0 14.3 124 6-157 369-503 (538)
33 3rag_A Uncharacterized protein 95.7 0.015 5E-07 57.8 6.6 50 5-54 134-183 (242)
34 2ww8_A RRGA, cell WALL surface 95.6 0.055 1.9E-06 64.0 12.1 47 7-54 226-279 (893)
35 2iue_A Pactolus I-domain; memb 94.2 0.2 6.7E-06 48.9 9.7 100 7-121 5-115 (212)
36 3fcs_B Integrin beta-3; beta p 92.5 0.59 2E-05 53.6 11.8 145 7-154 113-310 (690)
37 3rag_A Uncharacterized protein 92.3 0.3 1E-05 48.4 7.8 66 110-189 9-74 (242)
38 1pcx_A Protein transport prote 89.6 2.6 8.9E-05 49.4 13.6 82 136-228 367-456 (810)
39 3vi3_B Integrin beta-1; beta p 88.6 4.6 0.00016 43.6 13.4 46 8-53 125-170 (454)
40 3k6s_B Integrin beta-2; cell r 87.9 0.97 3.3E-05 51.8 8.2 143 7-153 106-299 (687)
41 2nut_A Protein transport prote 85.7 34 0.0012 39.6 19.8 82 136-228 335-424 (769)
42 1m2v_B SEC24, protein transpor 84.9 5.7 0.0002 47.0 12.8 82 136-228 483-572 (926)
43 3t3p_B Integrin beta-3; integr 82.4 3 0.0001 45.2 8.4 47 7-53 113-159 (472)
44 3v4v_B Integrin beta-7; cell a 82.4 3.6 0.00012 44.9 8.9 47 7-53 134-180 (503)
45 3efo_B SEC24 related gene fami 79.6 28 0.00095 40.4 15.8 83 135-228 355-443 (770)
46 1m2o_A SEC23, protein transpor 78.8 89 0.0031 36.1 19.8 83 136-228 329-418 (768)
47 3eh1_A Protein transport prote 73.6 70 0.0024 36.9 16.9 83 135-228 330-421 (751)
48 3eh2_A Protein transport prote 71.0 52 0.0018 38.1 15.0 84 135-229 351-440 (766)
49 3si5_X Protein CASC5; BUBR1-bl 46.2 9.1 0.00031 22.9 1.4 12 621-632 11-22 (24)
50 2cqn_A Formin-binding protein 45.8 8.2 0.00028 30.9 1.7 39 598-636 30-71 (77)
51 2czy_A Paired amphipathic heli 33.8 50 0.0017 26.2 4.5 34 599-634 3-36 (77)
52 1lgh_B LH II, B800/850, light 29.8 18 0.00063 25.7 1.1 15 658-672 2-16 (45)
53 1e91_A Paired amphipathic heli 26.8 70 0.0024 25.9 4.3 35 599-635 6-40 (85)
54 2cr7_A Paired amphipathic heli 25.4 50 0.0017 26.5 3.2 35 598-634 8-42 (80)
55 1g1e_B SIN3A; four-helix bundl 22.1 1E+02 0.0035 25.2 4.5 34 598-633 8-41 (89)
56 2f05_A Paired amphipathic heli 20.1 1.1E+02 0.0039 25.8 4.5 31 600-632 7-37 (105)
No 1
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=100.00 E-value=1.5e-82 Score=724.51 Aligned_cols=496 Identities=22% Similarity=0.377 Sum_probs=418.9
Q ss_pred CCC--CCeEEEEEEeCCCCcCC-------ChhHHHHHHHHHHHHhHhcCCccEEEEEEecCCccCccccccCCCcCcEEE
Q 005694 1 MAR--TREALLLLLDVSPSMHS-------VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKV 71 (682)
Q Consensus 1 Ma~--~Kea~vf~iDv~~sM~~-------~l~~a~~~~~~~~~~ki~~~~~D~vgvvlfgt~~t~n~l~~e~~~y~nI~v 71 (682)
||+ +||++|||||+|.||+. .|+.|++++..++++||+++++|+||||+|||+.|.|+++.+ ++|+||++
T Consensus 1 ~~~~~~ke~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~~plt~d-~~y~~i~v 79 (565)
T 1jey_B 1 MVRSGNKAAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGG-DQYQNITV 79 (565)
T ss_dssp -----CCEEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCTT-TCSTTEEE
T ss_pred CCCCCCceEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCCCccccc-cCCCceEE
Confidence 766 57999999999999985 478899999999999999999999999999999999998755 68999999
Q ss_pred EeccCCCCHHHHHHhhc-CCCCCCCChH-----HHHHHH---cCCCc-ccceEEEEeCCCCCCCCCCCCCchhhHHHHHH
Q 005694 72 LQDIKVVDGHLVQSLKH-LPQGTCAGDY-----MLIKKY---GETYK-GKKHLCLITDALCPLKDPDVGTKEDQVSTIAR 141 (682)
Q Consensus 72 ~~~l~~~~~~~l~~L~~-l~~~~~~gD~-----~li~~~---~~~kk-~~krI~L~Td~~~p~~~~~~~~~~~~~~~i~~ 141 (682)
+++|+.++++.++.|.+ +..+...+++ .+++.+ +.+++ .+||||||||+++|++. +++..+++
T Consensus 80 l~~l~~~~~~~l~~l~~~l~~~~~~t~i~~al~~A~~~l~~~~~~~k~~~krIiLlTDg~~~~~~-------~~~~~~a~ 152 (565)
T 1jey_B 80 HRHLMLPDFDLLEDIESKIQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSK-------SQLDIIIH 152 (565)
T ss_dssp EEEEECCCHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCCCC-------TTHHHHHH
T ss_pred eecCCCCCHHHHHHHHhhccCCCccccHHHHHHHHHHHHHHHhhcccccccEEEEEeCCCCCCCH-------HHHHHHHH
Confidence 99999999999999998 7655344443 333333 22333 57999999999999853 57999999
Q ss_pred HHhhcCcEEE-EEeeccC-----CC----------------CCCCcchhchhhHHHHHHhhhcCC-----eeeehhchHH
Q 005694 142 QMVAFGLRMK-NIVVRAS-----LS----------------GEPHMRVIIENDNLLNIFSKKSSA-----KTLFVDSTTS 194 (682)
Q Consensus 142 ~l~~~~I~l~-vi~i~~~-----~~----------------~~~~~~~~~~ne~~l~~~~~~~~g-----~~~~~~~a~~ 194 (682)
.+++.||.|. +||++.+ |+ .+........|+.+|+.+++.++| .+++++++++
T Consensus 153 ~l~~~gI~i~~vig~g~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~e~~L~~ia~~~~G~~~~s~~~~~~~~~~ 232 (565)
T 1jey_B 153 SLKKCDISLQFFLPFSLGKEDGSGDRGDGPFRLGGHGPSFPLKGITEQQKEGLEIVKMVMISLEGEDGLDEIYSFSESLR 232 (565)
T ss_dssp HHHHTTEEEEEEESSCCC----------CCCCTTCSSCCCCTTTSCHHHHHHHHHHHHHHHHHHCGGGGGGEEEHHHHTT
T ss_pred HHHhcCcEEEEEeccCCCcCCcccccccccccccccccccchhccccchhhhHHHHHHHHHhcCCCcccceeecHHHHHH
Confidence 9999999999 8887532 10 111112235789999999999999 8999999999
Q ss_pred hhcccccccCCcceeeeeeEeecCCeEEEEEEEeecccccC-Ccc-eEeccCCCCCcccccceeEEEEEEeecCCCCCCC
Q 005694 195 LRGARKTRDISPVTIFRGDLELSEKMKIKVWVYKKTGEEKF-PTL-KKYSDKAPSTDKFATHEVKVDYEYKSVEDPSKVV 272 (682)
Q Consensus 195 ll~~~~~k~~~~~~~~~g~L~lg~~l~I~V~~Y~~~~~~k~-p~~-~~~~~~~~~~~~~~~~~V~~~~~y~~~~d~~~~V 272 (682)
++..++.+.++++ +|+|.|+||++++|+|++|++|+.+++ +.+ +.+..+. ....|+.+|+|+.+++++++|
T Consensus 233 ~l~~~k~~~~r~~-~~~g~l~lg~~v~I~V~~Y~~~~~~~~~~~~~~l~~~~~------~~~~V~~~~~y~v~~~~~~~V 305 (565)
T 1jey_B 233 KLCVFKKIERHSI-HWPCRLTIGSNLSIRIAAYKSILQERVKKTWTVVDAKTL------KKEDIQKETVYCLNDDDETEV 305 (565)
T ss_dssp SSTTTGGGCCCCC-CEEEEEEETTTEEEEEEEEEEECCCCCCCCCEEEETTTC------CSTTEEEEEEEEESSSSCCEE
T ss_pred HhccCcceeeccc-ccccceEECCCcEEEEEEEeeehhcccCCceEEecCccC------CCcceEEEEEEEecCCCCccc
Confidence 9999999998876 799999999999999999999999984 333 3333321 135799999996578899999
Q ss_pred CccccccceecCCeeEecChhhHHhhhcCCC-ccEEEEEEeeCCCccchhccCCe-EEEEcCCCChhhHHHHHHHHHHHH
Q 005694 273 PPEQRIKGYRYGPQVVPISSAEWEAVKFKPE-KSVKLLGFTDASNILRHYYMKDV-NLFIAEPGNSRATVAVSALARAMK 350 (682)
Q Consensus 273 ~~edlvkgy~yG~~~Vp~s~~e~~~~k~~~~-k~l~ilGF~~~~~i~~~~~~~~~-~~i~p~~~~~~s~~afsaL~~Am~ 350 (682)
+++|++|||+||+++|+|+++|++.+++.+. ++|+|+||+++++|+++||++++ ||++|++++.+|..||+||++||.
T Consensus 306 ~~~di~kgy~yg~~~V~~~~ee~~~~~~~~~~~~l~ilgFv~~~~i~~~~~~~~s~y~l~p~~~~~~s~~af~aL~~al~ 385 (565)
T 1jey_B 306 LKEDIIQGFRYGSDIVPFSKVDEEQMKYKSEGKCFSVLGFCKSSQVQRRFFMGNQVLKVFAARDDEAAAVALSSLIHALD 385 (565)
T ss_dssp CGGGEEEEEEETTEEEECCHHHHHHHSCCCCCSEEEEEEEEEGGGSCGGGCEEEEEEEEEECTTCHHHHHHHHHHHHHHH
T ss_pred ChHHeeeeEecCCeeeccCHHHHHHhcccCCCCcEEEEeeccHHHCCHhhccCCceEEEeCCCCChhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999875 99999999999999999999976 899998888999999999999999
Q ss_pred hcCceEEEEEEecCCCCceEEEEeeccccCCCCCCCeEEEecCCChhcccCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 005694 351 EMNKVAIVRCVWRQGQQSVVVGVLTPNVSEKINIPDSFYFNVLPFAEDVREFQFPSFSKFPVSWQPNEQQQEAADNLVKM 430 (682)
Q Consensus 351 e~~~vaI~r~v~r~~~~p~~l~~L~P~~~~~~~~~~~l~~~~LPFaeDvR~~~fp~l~~~~~~~~p~~eq~~a~~~lId~ 430 (682)
++++|||||||+|.++. |.|++|+|+++.. ++||++++|||+||||.++||+|... ....|+++|+++|++||++
T Consensus 386 ~~~kvaIar~v~r~~~~-p~l~aL~P~~~~~---~~gl~l~~Lpf~ddvR~~~f~~l~~~-~~~~~~~~~l~~a~~lId~ 460 (565)
T 1jey_B 386 DLDMVAIVRYAYDKRAN-PQVGVAFPHIKHN---YECLVYVQLPFMEDLRQYMFSSLKNS-KKYAPTEAQLNAVDALIDS 460 (565)
T ss_dssp HTTEEEEEEEESSSSSC-CEEEEEEEEECSS---CEEEEEEECCCGGGBCCCCCCCSTTC-SSSCCCHHHHHHHHHHHHH
T ss_pred HCCCEEEEEEEEcCCCC-cEEEEEeccccCC---CCeEEEEccCCHHHcccccCCCCCcc-ccCCCCHHHHHHHHHHHHh
Confidence 99999999999999975 5577899997654 57999999999999999999998632 2457999999999999999
Q ss_pred cCCCCCC-----CCccCCCCCCCCchhHHHHHHHHHhhcCCCCCCCCCchhhhhhcCCCHHHHHHHHHHHHHHHhhcCCc
Q 005694 431 LDLAPSG-----KGEILQPELTPNPALERFYHHLELKSEHQDAAPPPLDDSLKKITEPDPTLLAESQSAIDAFCGQFVIK 505 (682)
Q Consensus 431 m~l~~~~-----~~e~~~p~~~~NP~lqr~~~~i~~ral~~~~~~p~~~~~l~~~~~p~~~~~~~~~~~le~lk~~f~~~ 505 (682)
|+++..+ .++.|+|+.|+||++||||++|+++|++++.|+|+++++|.++++||+.+.++++++|++|+++|+++
T Consensus 461 m~~~~~~~~~~~~~~~~~p~~~~np~lq~~~~~i~~kal~~~~~~p~~d~~l~~~~~p~~~~~~~~~~~l~~~k~~f~~~ 540 (565)
T 1jey_B 461 MSLAKKDEKTDTLEDLFPTTKIPNPRFQRLFQCLLHRALHPREPLPPIQQHIWNMLNPPAEVTTKSQIPLSKIKTLFPLI 540 (565)
T ss_dssp TBCEECCTTSSCCEESCCGGGSCCHHHHHHHHHHHHHHHCTTSCCCCCCHHHHHHHSCCHHHHHHHHHHHHHHHHHSCCE
T ss_pred ccCCcccccCcchhcccCcccCCCHHHHHHHHHHHHHhcCCCCCCCCcCHHHHhhcCCCHHHHHHHHHHHHHHHHhCCce
Confidence 9995211 12369999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccchhhhc
Q 005694 506 ENPKLKKSTRRFL 518 (682)
Q Consensus 506 ~~~~k~k~~~~~~ 518 (682)
++ |+|+.+.+|
T Consensus 541 ~~--~~k~~~~~~ 551 (565)
T 1jey_B 541 EA--KKKDQVTAQ 551 (565)
T ss_dssp EC--CCC------
T ss_pred eh--hcccchhhH
Confidence 99 444445555
No 2
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=100.00 E-value=1.4e-76 Score=679.33 Aligned_cols=466 Identities=18% Similarity=0.252 Sum_probs=384.1
Q ss_pred CCCeEEEEEEeCCCCcCC--------ChhHHHHHHHHHHHHhHhcCCccEEEEEEecCCccCccccccCCCcCcEEEEec
Q 005694 3 RTREALLLLLDVSPSMHS--------VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQD 74 (682)
Q Consensus 3 ~~Kea~vf~iDv~~sM~~--------~l~~a~~~~~~~~~~ki~~~~~D~vgvvlfgt~~t~n~l~~e~~~y~nI~v~~~ 74 (682)
++||+||||||||+||+. .|+.|++|+..++++||+++++|+||||+|||+.|.|++ +|+||+++++
T Consensus 33 ~~ke~ivf~IDvS~SM~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t~n~l-----~~d~i~v~~~ 107 (609)
T 1jey_A 33 SGRDSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSV-----NFKNIYVLQE 107 (609)
T ss_dssp -CEEEEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTT-----CCTTEEEEEE
T ss_pred cCceEEEEEEECCHHHcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCCCCcC-----CCCCeEEEec
Confidence 479999999999999986 377899999999999999999999999999999999998 7999999999
Q ss_pred cCCCCHHHHHHhhcCCC-----------C-CCCChH-----HHHHHHcCC--CcccceEEEEeCCCCCCCCCCCCCchhh
Q 005694 75 IKVVDGHLVQSLKHLPQ-----------G-TCAGDY-----MLIKKYGET--YKGKKHLCLITDALCPLKDPDVGTKEDQ 135 (682)
Q Consensus 75 l~~~~~~~l~~L~~l~~-----------~-~~~gD~-----~li~~~~~~--kk~~krI~L~Td~~~p~~~~~~~~~~~~ 135 (682)
|+.|+++.++.|+++.. + ...+++ .+++.|... +..+||||||||+++|++. +.....+
T Consensus 108 L~~~~~~~ik~l~~l~~~~~~~~~~~~~g~~~~t~l~daL~~a~~~f~~~~~k~~~k~IiL~TDg~~p~~~--~~~~~~~ 185 (609)
T 1jey_A 108 LDNPGAKRILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGN--DSAKASR 185 (609)
T ss_dssp EECCCHHHHHHHHTTSHHHHHHHHHHHHCCSCCCCHHHHHHHHHHHHHTCSSCEEEEEEEEEESCSCTTTT--CHHHHHH
T ss_pred CCCCCHHHHHHHHHHhhcccchhhhhhcCCCCCCCHHHHHHHHHHHHHhhchhhcCCEEEEEcCCCCCCCC--chHHHHH
Confidence 99999999999998742 2 223343 566666543 3469999999999999864 1111247
Q ss_pred HHHHHHHHhhcCcEEEEEeeccCCCCCCCcchhchhhHHHHHHh--------hhcCCeeeehhchHHhhcccccccCCcc
Q 005694 136 VSTIARQMVAFGLRMKNIVVRASLSGEPHMRVIIENDNLLNIFS--------KKSSAKTLFVDSTTSLRGARKTRDISPV 207 (682)
Q Consensus 136 ~~~i~~~l~~~~I~l~vi~i~~~~~~~~~~~~~~~ne~~l~~~~--------~~~~g~~~~~~~a~~ll~~~~~k~~~~~ 207 (682)
+..++++|++.||+|.+||++.+ +.+... .++..+. ....+..+++ .+++..++.|.+++|
T Consensus 186 ~~~~a~~l~~~gI~i~~igig~~--~~fd~~------~fy~~~~~~~~~~~~~~~~~~~~~l---~~ll~~i~~k~~~~R 254 (609)
T 1jey_A 186 ARTKAGDLRDTGIFLDLMHLKKP--GGFDIS------LFYRDIISIAEDEDLRVHFEESSKL---EDLLRKVRAKETRKR 254 (609)
T ss_dssp HHHHHHHHHHHTEEEEEEEBCCT--TCCCTT------TTGGGTCC--------CCCCCBCSH---HHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHhcCcEEEEEecCCC--Cccchh------hhhhhhhccccccchhcccCchhhH---HHHHHHHHhhhccce
Confidence 89999999999999999999642 222111 1111111 0111222333 467788899999999
Q ss_pred eeeeeeEeecCCeEEEEEEEeecccccCCcceEeccCCCCCcccccceeEEEEEEeecCCCCCCCCccccccceecCCee
Q 005694 208 TIFRGDLELSEKMKIKVWVYKKTGEEKFPTLKKYSDKAPSTDKFATHEVKVDYEYKSVEDPSKVVPPEQRIKGYRYGPQV 287 (682)
Q Consensus 208 ~~~~g~L~lg~~l~I~V~~Y~~~~~~k~p~~~~~~~~~~~~~~~~~~~V~~~~~y~~~~d~~~~V~~edlvkgy~yG~~~ 287 (682)
++|+|+|+||++++|+|++|++|+.+++++.+++.... ...|+.+++|+ +++++++|++++++|||+||+++
T Consensus 255 ~~~~g~l~lg~~v~I~V~~Y~~t~~~~~~~~~~l~~~~-------~~~V~~~~~~~-~~~~g~~V~~~di~kgy~yg~~~ 326 (609)
T 1jey_A 255 ALSRLKLKLNKDIVISVGIYNLVQKALKPPPIKLYRET-------NEPVKTKTRTF-NTSTGGLLLPSDTKRSQIYGSRQ 326 (609)
T ss_dssp CSEEEEEESSSSCEEEEEEECSBCCCCCCCCEEEETTT-------TEEEEEEEEEE-ETTTCCBCCGGGEEEEEEETTEE
T ss_pred eeeeeeeEECCCCEEEEEEEeecccccCCCcEEEcccC-------CccceEEEEEE-eCCCCCccChhhceeeeeeCCee
Confidence 99999999999999999999999999866544443221 35788888888 57889999999999999999999
Q ss_pred EecChhhHHhhhcCCCccEEEEEEeeCCCccchhccCCeEEEEcCCC-ChhhHHHHHHHHHHHHhcCceEEEEEEecCCC
Q 005694 288 VPISSAEWEAVKFKPEKSVKLLGFTDASNILRHYYMKDVNLFIAEPG-NSRATVAVSALARAMKEMNKVAIVRCVWRQGQ 366 (682)
Q Consensus 288 Vp~s~~e~~~~k~~~~k~l~ilGF~~~~~i~~~~~~~~~~~i~p~~~-~~~s~~afsaL~~Am~e~~~vaI~r~v~r~~~ 366 (682)
|+|+++|++.++..++|+|+|+||+++++|+++|+|+++|||+|++. ..+|..||+||++||.++++|||||||+|.++
T Consensus 327 V~~~~ee~~~~k~~~~~~i~ilgFv~~~~i~~~~~~~~~~~l~P~~~~~~~s~~afsaL~~al~~~~kvaIar~v~r~~~ 406 (609)
T 1jey_A 327 IILEKEETEELKRFDDPGLMLMGFKPLVLLKKHHYLRPSLFVYPEESLVIGSSTLFSALLIKCLEKEVAALCRYTPRRNI 406 (609)
T ss_dssp EEECHHHHHHTTCCSCSEEEEEEEEEGGGSCGGGCCSCCEEEEECTTTEETHHHHHHHHHHHHHHTTEEEEEEEECSSSC
T ss_pred eccCHHHHHHHhccCCCceEEEeecchHhCchhhccCCceEEecCCCCccchHHHHHHHHHHHHhcCcEEEEEEEecCCC
Confidence 99999999999999999999999999999999999999999999874 45799999999999999999999999999997
Q ss_pred CceEEEEeeccccC-----CCCCCCeEEEecCCChhcccCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCcc
Q 005694 367 QSVVVGVLTPNVSE-----KINIPDSFYFNVLPFAEDVREFQFPSFSKFPVSWQPNEQQQEAADNLVKMLDLAPSGKGEI 441 (682)
Q Consensus 367 ~p~~l~~L~P~~~~-----~~~~~~~l~~~~LPFaeDvR~~~fp~l~~~~~~~~p~~eq~~a~~~lId~m~l~~~~~~e~ 441 (682)
. |.|++|+|+.+. .+..++||++++|||+||||.++||+ ...|+++|+++|++||++|+++
T Consensus 407 ~-p~l~aL~P~~~~~d~~~~q~~~~gl~l~~Lpf~ddvR~~~f~~------~~~~~~~~l~~a~~lI~~m~~~------- 472 (609)
T 1jey_A 407 P-PYFVALVPQEEELDDQKIQVTPPGFQLVFLPFADDKRKMPFTE------KIMATPEQVGKMKAIVEKLRFT------- 472 (609)
T ss_dssp C-CEEEEEEEECCEECTTCCEEECSEEEEEECCCGGGBCCCCCCC------CCCCCHHHHHHHHHHHHHTBCC-------
T ss_pred C-CEEEEEeCccccccccCCcCCCCeeEEEecCccccccCCCCcc------cCCCCHHHHHHHHHHHHhcccC-------
Confidence 5 557789998762 11246799999999999999999864 3479999999999999999996
Q ss_pred CCCCCCCCchhHHHHHHHHHhhcCCCCCCCCCchhhhhhcCCCHHHHH-HHHHHHHHHHhh-cCCccCCccccc
Q 005694 442 LQPELTPNPALERFYHHLELKSEHQDAAPPPLDDSLKKITEPDPTLLA-ESQSAIDAFCGQ-FVIKENPKLKKS 513 (682)
Q Consensus 442 ~~p~~~~NP~lqr~~~~i~~ral~~~~~~p~~~~~l~~~~~p~~~~~~-~~~~~le~lk~~-f~~~~~~~k~k~ 513 (682)
|+|+.|+||++||||++|+++|++++.|+|+.|++ .|+++.++ +++++|++|+++ |+++++|.+++.
T Consensus 473 ~~p~~~~np~lq~~~~~i~a~al~~~~~~~~~d~t-----~p~~~~~~~~~~~~~~~~k~~~f~~~~~~~~~~~ 541 (609)
T 1jey_A 473 YRSDSFENPVLQQHFRNLEALALDLMEPEQAVDLT-----LPKVEAMNKRLGSLVDEFKELVYPPDYNPEGKVT 541 (609)
T ss_dssp CCTTSCCCHHHHHHHHHHHHHHTTCSSCCCCCCTT-----SCCHHHHHHHHTTHHHHHHHHHSCSCC-------
T ss_pred CCcccCCCHHHHHHHHHHHHHhcCCCCCCCCCCcc-----cCCHHHHHHHHHHHHHHHHHhhccccccchhccc
Confidence 99999999999999999999999999999887764 48888775 789999999998 999999876543
No 3
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=100.00 E-value=2.4e-37 Score=287.20 Aligned_cols=131 Identities=21% Similarity=0.427 Sum_probs=122.1
Q ss_pred CCCCCcceeeecCCChHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHhhhhcCchHH
Q 005694 544 ESKPVVTVDKIGDLTPIQDFEAMMSRRDCPDWVDKAIEDMKNKIFGLLENSNEGINYPKAVELLVALRKGCILEQEPKQF 623 (682)
Q Consensus 544 ~~~~~~~~~~ig~~~pv~dF~~~l~~~~~~~~~~~a~~qm~~~I~~lv~~s~~~~~y~ka~~cl~~~R~~~i~~~e~~~~ 623 (682)
.++.+ .++.||++|||+||++||++++. .|++|++||+++|++||.+| |+.+|+||++||++||++||.++||..|
T Consensus 22 ~l~~~-~v~~Ig~~nPv~DFk~lL~~~~~--~~~~A~~qM~~vI~~Ll~~s-~~~~y~KA~ecL~~lR~~~i~~~ep~~y 97 (152)
T 1rw2_A 22 SLAEG-SVTSVGSVNPAENFRVLVKQKKA--SFEEASNQLINHIEQFLDTN-ETPYFMKSIDCIRAFREEAIKFSEEQRF 97 (152)
T ss_dssp CSSSS-SSCSSSSSCTTHHHHHHHHSSSS--CHHHHHHHHHHHHHHHHHSS-CSHHHHHHHHHHHHHHHHHHHHTCSHHH
T ss_pred HhccC-CCceeCCCCcHHHHHHHHHcCch--hHHHHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHHHhccChHHH
Confidence 33344 37999999999999999999753 49999999999999999988 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHhCCcccccccccCcCCCCHHHHhccccccCC
Q 005694 624 NDVLEKVCKICRKRNFSTFFDFLMSKKLSLISKSEAVDSDITDDEAGSFIVKSQP 678 (682)
Q Consensus 624 N~fl~~lk~~~~~~~~~~fw~~i~~~~l~lI~~~E~~~s~vt~~ea~~F~~~~~~ 678 (682)
|+||++||++|+++++++||+.|++++||||+++|++.|+||++||++||.++++
T Consensus 98 N~Fl~~LK~~l~~~~l~~FW~~Iv~~~lgLI~~~Es~~S~Vt~eeA~~Fl~~~~~ 152 (152)
T 1rw2_A 98 NNFLKALQEKVEIKQLNHFWEIVVQDGITLITKEEASGSSVTAEEAKKFLAPKDK 152 (152)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHTCSSCSSSSSSSCSCCTHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHCCcccccHhhccccCCCHHHHHHHHcccCC
Confidence 9999999999999999999999999999999999999999999999999997763
No 4
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=100.00 E-value=6.8e-37 Score=275.08 Aligned_cols=120 Identities=23% Similarity=0.458 Sum_probs=115.2
Q ss_pred cCCChHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHhhhhcCchHHHHHHHHHHHHH
Q 005694 555 GDLTPIQDFEAMMSRRDCPDWVDKAIEDMKNKIFGLLENSNEGINYPKAVELLVALRKGCILEQEPKQFNDVLEKVCKIC 634 (682)
Q Consensus 555 g~~~pv~dF~~~l~~~~~~~~~~~a~~qm~~~I~~lv~~s~~~~~y~ka~~cl~~~R~~~i~~~e~~~~N~fl~~lk~~~ 634 (682)
|++|||+||++||++++. .|++|++||+++|++||.+| |+.+|+||++||++||++||.++||..||+||++||++|
T Consensus 1 G~~nPv~DFk~ll~~~~~--~~~~A~~qm~~vI~~Ll~~s-~~~~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~Lk~~~ 77 (120)
T 1q2z_A 1 GPVNPAENFRVLVKQKKA--SFEEASNQLINHIEQFLDTN-ETPYFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKV 77 (120)
T ss_dssp CCCCHHHHHHHHTSSSCC--TTTHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHcCch--hHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 899999999999999753 49999999999999999988 999999999999999999999999999999999999999
Q ss_pred hcCChhhHHHHHHhCCcccccccccCcCCCCHHHHhccccccC
Q 005694 635 RKRNFSTFFDFLMSKKLSLISKSEAVDSDITDDEAGSFIVKSQ 677 (682)
Q Consensus 635 ~~~~~~~fw~~i~~~~l~lI~~~E~~~s~vt~~ea~~F~~~~~ 677 (682)
+++++++||+.|++++|||||++|++.|+||++||++||..++
T Consensus 78 ~~~~l~~FW~~iv~~~lgLI~~~E~~~S~vt~eeA~~Fl~~~~ 120 (120)
T 1q2z_A 78 EIKQLNHFWEIVVQDGITLITKEEASGSSVTAEEAKKFLAPKD 120 (120)
T ss_dssp HTTSTTHHHHHHHHTTCCSCCSTTSSSCCCCHHHHTTTSCSCC
T ss_pred HhhhHHHHHHHHHHCCcCCCcHhhccccCCCHHHHHHHhccCC
Confidence 9999999999999999999999999999999999999998764
No 5
>3ism_C CG4930; endonuclease, endonuclease inhibitor complex, metal complex, hydrolase, hydrolase inhibitor-hydrolase complex; 2.20A {Drosophila melanogaster}
Probab=99.64 E-value=3.1e-16 Score=155.48 Aligned_cols=124 Identities=21% Similarity=0.276 Sum_probs=112.6
Q ss_pred eeeecCCChHHHHHHHHhCCCC----------chhHHHHHHHHHHHHHHHhcccCCC--CChHHHHHHHHHHHHHhhhhc
Q 005694 551 VDKIGDLTPIQDFEAMMSRRDC----------PDWVDKAIEDMKNKIFGLLENSNEG--INYPKAVELLVALRKGCILEQ 618 (682)
Q Consensus 551 ~~~ig~~~pv~dF~~~l~~~~~----------~~~~~~a~~qm~~~I~~lv~~s~~~--~~y~ka~~cl~~~R~~~i~~~ 618 (682)
...||.++|++||+++|.+... ...|++.++||+++|.+||.++... ..|.||.+.|+.+|..| .+.
T Consensus 24 ~~~IGl~~PaeDYk~LL~~~v~~~~ivnd~~~~~~Fq~IaaqaR~VIw~LLF~~~~~~~e~~eKa~ELL~eYR~da-~Fy 102 (359)
T 3ism_C 24 DYTIGLVDPVKDYQKLIETRVQVDEIVDDDVTKENFDRTAAAARDVIWRLLFDEAGTSQSNTEKASQLLEEYRGDA-CFY 102 (359)
T ss_dssp CCCCCSSSHHHHHHHHHHHHTSCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred ceeeecCCcHHHHHHHHHHHHhhccccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHhcc-ccC
Confidence 4679999999999999986332 2679999999999999999988543 24899999999999999 899
Q ss_pred CchHHHHHHHHHHHHHhcCChhhHHHH-HHhCCcccccccccCcCCCCHHHHhccccc
Q 005694 619 EPKQFNDVLEKVCKICRKRNFSTFFDF-LMSKKLSLISKSEAVDSDITDDEAGSFIVK 675 (682)
Q Consensus 619 e~~~~N~fl~~lk~~~~~~~~~~fw~~-i~~~~l~lI~~~E~~~s~vt~~ea~~F~~~ 675 (682)
.|-.||+|+.+||+.++.+++.+||.. ||+++|||+-..|++-++++++.+.+||..
T Consensus 103 ~P~eYNEWIvkLRdelLkR~lleFW~dvIVkkQLGPc~srDSdlfd~dd~~p~eFY~~ 160 (359)
T 3ism_C 103 DPTPYNEWIVKLRDEVLKKELLDFWRDVLVKKQLGPCWSRDSDLFDSDDTPPLEFYAH 160 (359)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHTTTTTTCSSCCTTTCTTCCTTSCCCTGGGCS
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhcCCCccccCCCcchHHHHHh
Confidence 999999999999999999999999997 789999999999999999999999999974
No 6
>3ism_C CG4930; endonuclease, endonuclease inhibitor complex, metal complex, hydrolase, hydrolase inhibitor-hydrolase complex; 2.20A {Drosophila melanogaster}
Probab=99.23 E-value=7.7e-12 Score=124.27 Aligned_cols=123 Identities=18% Similarity=0.219 Sum_probs=93.3
Q ss_pred eeecCCChHHHHHHHHhCCC-----Cc-----hhHHHHHHHHHHHHHHHhcccCCC-CChHHHHHHHHHHHHHhhhhcCc
Q 005694 552 DKIGDLTPIQDFEAMMSRRD-----CP-----DWVDKAIEDMKNKIFGLLENSNEG-INYPKAVELLVALRKGCILEQEP 620 (682)
Q Consensus 552 ~~ig~~~pv~dF~~~l~~~~-----~~-----~~~~~a~~qm~~~I~~lv~~s~~~-~~y~ka~~cl~~~R~~~i~~~e~ 620 (682)
..||.++|.+||+.||.|.- .+ .-|.+.+++++++|++||.++... ..|+||.+.|+.+|..|- +=.|
T Consensus 211 ~~i~~e~PleDy~~Lmkr~v~t~~iv~d~i~~~~~~ki~~~ar~vIw~LLF~~~~~~e~~eKaa~lLqeyk~da~-fygP 289 (359)
T 3ism_C 211 ATLTKENPLEEYRTLMKRFVLTKIIVPDSVHQASVKKIAAAAREIIWKLLFDGTPSAEDQNKAAELLQEYKGDAG-FYGP 289 (359)
T ss_dssp --------CHHHHHHHHHHC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHH-HHCT
T ss_pred hhccCcCcHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhcc-ccCC
Confidence 45999999999999998761 11 348899999999999999988221 249999999999999996 5569
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHH-HHhCCcccccccccCcCCCCHHHHhccccc
Q 005694 621 KQFNDVLEKVCKICRKRNFSTFFDF-LMSKKLSLISKSEAVDSDITDDEAGSFIVK 675 (682)
Q Consensus 621 ~~~N~fl~~lk~~~~~~~~~~fw~~-i~~~~l~lI~~~E~~~s~vt~~ea~~F~~~ 675 (682)
-.||+|+-+||+.++.+++.+||.. |++.+||||-..+|+-=+-.+.---+||.+
T Consensus 290 ~~YNeWIvklrdelL~r~~l~FW~~~iVk~~lGp~~~rdSd~fd~dd~~p~efy~k 345 (359)
T 3ism_C 290 DDYNSWIFNLRDEVLTKELLDFWRDKMVKMELGPSCARDSDYYDNEDPLPFEFYEK 345 (359)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHTTTTTTCSSCCTTTCTTCCTTSCCCHHHHCS
T ss_pred chHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccchhccCCCcccHHHHHh
Confidence 9999999999999999999999986 889999999999988544422222356543
No 7
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.05 E-value=2.8e-09 Score=108.55 Aligned_cols=149 Identities=14% Similarity=0.108 Sum_probs=103.8
Q ss_pred CeEEEEEEeCCCCcCC------ChhHHHHHHHHHHHHhHhcCCccEEEEEEecCCccCccccccCCCcCcEEEEeccCCC
Q 005694 5 REALLLLLDVSPSMHS------VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV 78 (682)
Q Consensus 5 Kea~vf~iDv~~sM~~------~l~~a~~~~~~~~~~ki~~~~~D~vgvvlfgt~~t~n~l~~e~~~y~nI~v~~~l~~~ 78 (682)
-||||||||+|.||.. .++.+..++..|++.+.-.++.|.||||.|.... ..++.++..=
T Consensus 3 lEAtViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~--------------~~vl~plT~D 68 (268)
T 4b4t_W 3 LEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGAN--------------PRVLSTFTAE 68 (268)
T ss_dssp CEEEEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTS--------------CEEEEEEESC
T ss_pred ceeEEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCc--------------ceeccCCcch
Confidence 5899999999999964 3667788888888877778999999999997542 1234454332
Q ss_pred CHHHHHHhhcCCCC--CCCChH--HHHHHH--cCCCcccceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhcCcEEEE
Q 005694 79 DGHLVQSLKHLPQG--TCAGDY--MLIKKY--GETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKN 152 (682)
Q Consensus 79 ~~~~l~~L~~l~~~--~~~gD~--~li~~~--~~~kk~~krI~L~Td~~~p~~~~~~~~~~~~~~~i~~~l~~~~I~l~v 152 (682)
-...+..|..+..+ +.-+.. ..+... ...+...+||+|||+.+... +.+++..+++.+++.||.+.+
T Consensus 69 ~~~il~aL~~l~~~G~T~l~~gL~~A~~aLk~~~~k~~~~rIIlf~ds~~~~-------~~~~l~~lak~lkk~gI~v~v 141 (268)
T 4b4t_W 69 FGKILAGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISD-------SRDELIRLAKTLKKNNVAVDI 141 (268)
T ss_dssp HHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSS-------CHHHHHHHHHHHHHHTEEEEE
T ss_pred HHHHHHHhhhcCcCCCCChHHHHHHHHHHHHhcccCCCceEEEEEECCCCCC-------CHHHHHHHHHHHHHcCCEEEE
Confidence 23456677888653 222222 122222 22344678999999986542 346799999999999999999
Q ss_pred EeeccCCCCCCCcchhchhhHHHHHHhhhcCC
Q 005694 153 IVVRASLSGEPHMRVIIENDNLLNIFSKKSSA 184 (682)
Q Consensus 153 i~i~~~~~~~~~~~~~~~ne~~l~~~~~~~~g 184 (682)
|+++.. ..|...|..|++..+|
T Consensus 142 IgFG~~----------~~n~~kLe~l~~~~Ng 163 (268)
T 4b4t_W 142 INFGEI----------EQNTELLDEFIAAVNN 163 (268)
T ss_dssp EEESSC----------CSSCCHHHHHHHHHCS
T ss_pred EEeCCC----------ccchHHHHHHHHHhcC
Confidence 999541 1345678888877765
No 8
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=98.86 E-value=3e-08 Score=96.61 Aligned_cols=146 Identities=15% Similarity=0.215 Sum_probs=96.9
Q ss_pred CeEEEEEEeCCCCcCC------ChhHHHHHHHHHHHHhHhcCCccEEEEEEecCCccCccccccCCCcCcEEEEeccCCC
Q 005694 5 REALLLLLDVSPSMHS------VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV 78 (682)
Q Consensus 5 Kea~vf~iDv~~sM~~------~l~~a~~~~~~~~~~ki~~~~~D~vgvvlfgt~~t~n~l~~e~~~y~nI~v~~~l~~~ 78 (682)
+|++|||||+|.||.. .++.+.+++..|+..++-.++.|+||||.|+.+.. +++.|+..
T Consensus 2 ~e~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a--------------~~~~plT~- 66 (192)
T 2x5n_A 2 LEATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSP--------------QVLSTLTR- 66 (192)
T ss_dssp CEEEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSC--------------CEEEEEES-
T ss_pred ceEEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCc--------------EEecCCCC-
Confidence 6899999999999974 36778888999888888889999999999997421 12334432
Q ss_pred CHH-HHHHhhcCCCC--CCCChH--HHHHHHcC--CCcccceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhcCcEEE
Q 005694 79 DGH-LVQSLKHLPQG--TCAGDY--MLIKKYGE--TYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMK 151 (682)
Q Consensus 79 ~~~-~l~~L~~l~~~--~~~gD~--~li~~~~~--~kk~~krI~L~Td~~~p~~~~~~~~~~~~~~~i~~~l~~~~I~l~ 151 (682)
+.. .+..|.++..+ +.-++. .....+.. .+...+||+||++++.. . +..++..+++.+++.||.+.
T Consensus 67 d~~~i~~~L~~l~~~g~t~l~~aL~~A~~~l~~~~~~~~~~riiil~~~~~~-~------~~~~~~~~a~~lk~~gi~v~ 139 (192)
T 2x5n_A 67 DYGKFLSAMHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIV-E------DEKNLIRLAKRMKKNNVAID 139 (192)
T ss_dssp CHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCS-S------CHHHHHHHHHHHHHTTEEEE
T ss_pred CHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHhccccCCCceEEEEEECCCC-C------CchhHHHHHHHHHHCCCEEE
Confidence 333 45566776543 333333 23333322 12345677666654331 1 23678899999999999999
Q ss_pred EEeeccCCCCCCCcchhchhhHHHHHHhhhcC
Q 005694 152 NIVVRASLSGEPHMRVIIENDNLLNIFSKKSS 183 (682)
Q Consensus 152 vi~i~~~~~~~~~~~~~~~ne~~l~~~~~~~~ 183 (682)
+++++.. ..|+. |+.|++..+
T Consensus 140 ~Ig~G~~----------~~~~~-l~~la~~~n 160 (192)
T 2x5n_A 140 IIHIGEL----------QNESA-LQHFIDAAN 160 (192)
T ss_dssp EEEESCC-------------CH-HHHHHHHHC
T ss_pred EEEeCCC----------CccHH-HHHHHHhcc
Confidence 9999541 12446 888887754
No 9
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=98.74 E-value=1.1e-07 Score=93.90 Aligned_cols=158 Identities=21% Similarity=0.250 Sum_probs=103.1
Q ss_pred CeEEEEEEeCCCCcCC------ChhHHHHHHHHHHHHhHhcCCccEEEEEEecCCccCccccccCCCcCcEEEEeccCCC
Q 005694 5 REALLLLLDVSPSMHS------VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV 78 (682)
Q Consensus 5 Kea~vf~iDv~~sM~~------~l~~a~~~~~~~~~~ki~~~~~D~vgvvlfgt~~t~n~l~~e~~~y~nI~v~~~l~~~ 78 (682)
.-.++||||+|.||.. .+..+..++..++. ..+.|.||||.|++. ..++.++..
T Consensus 11 ~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~----~~~~~~v~lv~F~~~---------------~~~~~~~~~- 70 (218)
T 3ibs_A 11 GVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVD----ELDNDKVGMIVFAGD---------------AFTQLPITS- 70 (218)
T ss_dssp CCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHH----TCSSCEEEEEEESSS---------------EEEEEEEES-
T ss_pred CCcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHH----hCCCCeEEEEEECCC---------------ceEeCCCCC-
Confidence 4468999999999985 46778888888887 457999999999864 223344433
Q ss_pred CHHHHH-HhhcCCCC------CCCChH--HHHHHHcCCCcccceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhcCcE
Q 005694 79 DGHLVQ-SLKHLPQG------TCAGDY--MLIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLR 149 (682)
Q Consensus 79 ~~~~l~-~L~~l~~~------~~~gD~--~li~~~~~~kk~~krI~L~Td~~~p~~~~~~~~~~~~~~~i~~~l~~~~I~ 149 (682)
+.+.++ .|..+..+ |..++. .....+.......+.||||||+..... .+...++.++..||.
T Consensus 71 ~~~~~~~~l~~l~~~~~~~g~T~l~~al~~a~~~l~~~~~~~~~ivllTDG~~~~~---------~~~~~~~~~~~~~i~ 141 (218)
T 3ibs_A 71 DYISAKMFLESISPSLISKQGTAIGEAINLATRSFTPQEGVGRAIIVITDGENHEG---------GAVEAAKAAAEKGIQ 141 (218)
T ss_dssp CHHHHHHHHHTCCGGGCCSCSCCHHHHHHHHHTTSCSCSSCCEEEEEEECCTTCCS---------CHHHHHHHHHTTTEE
T ss_pred CHHHHHHHHHhcCcccCCCCCCcHHHHHHHHHHHHhhCCCCCcEEEEEcCCCCCCC---------cHHHHHHHHHhcCCE
Confidence 344433 45556431 222222 222222222245789999999976421 477888899999999
Q ss_pred EEEEeeccCC------CC--------CCCcchhchhhHHHHHHhhhcCCeeeehhc
Q 005694 150 MKNIVVRASL------SG--------EPHMRVIIENDNLLNIFSKKSSAKTLFVDS 191 (682)
Q Consensus 150 l~vi~i~~~~------~~--------~~~~~~~~~ne~~l~~~~~~~~g~~~~~~~ 191 (682)
+.+|+++.+- .+ .+..-....++..|+.++..++|.++.+..
T Consensus 142 v~~igig~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~L~~iA~~~gG~~~~~~~ 197 (218)
T 3ibs_A 142 VSVLGVGMPEGAPIPVEGTNDYRRDREGNVIVTRLNEGMCQEIAKDGKGIYVRVDN 197 (218)
T ss_dssp EEEEEESCTTCEECBCTTSSCBCBCTTSCBCEECCCHHHHHHHHHHTEEEEEEECS
T ss_pred EEEEEecCCCCCcccccCCCceeEcCCCCEeEecCCHHHHHHHHHhcCCEEEECCC
Confidence 9999996410 00 000001134678899999999998876654
No 10
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=98.54 E-value=9.7e-07 Score=87.75 Aligned_cols=161 Identities=13% Similarity=0.145 Sum_probs=101.6
Q ss_pred eEEEEEEeCCCCcCCChhHHHHHHHHHHHHhHhcCCccEEEEEEecCCccCccccccCCCcCcEEEEeccCCC-C-HHHH
Q 005694 6 EALLLLLDVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV-D-GHLV 83 (682)
Q Consensus 6 ea~vf~iDv~~sM~~~l~~a~~~~~~~~~~ki~~~~~D~vgvvlfgt~~t~n~l~~e~~~y~nI~v~~~l~~~-~-~~~l 83 (682)
--++|+||+|.||. .+..++..+..++.+.-+..+.++||||.|++.. .+..++... + .+.+
T Consensus 23 ~div~vlD~SgSM~-~~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~---------------~~~~~l~~~~~~~~~~ 86 (223)
T 2b2x_A 23 LDIVIVLDGSNSIY-PWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENV---------------THEFNLNKYSSTEEVL 86 (223)
T ss_dssp EEEEEEEECSTTCC-CHHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSE---------------EEEECTTTCCSHHHHH
T ss_pred ceEEEEEECCCChh-hHHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCc---------------cEEEecCCCCCHHHHH
Confidence 35899999999998 5888888888888754445789999999998742 223444322 2 2356
Q ss_pred HHhhcCCC--C--CCCChH--HHHHH-Hc----CCCcccceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhcCcEEEE
Q 005694 84 QSLKHLPQ--G--TCAGDY--MLIKK-YG----ETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKN 152 (682)
Q Consensus 84 ~~L~~l~~--~--~~~gD~--~li~~-~~----~~kk~~krI~L~Td~~~p~~~~~~~~~~~~~~~i~~~l~~~~I~l~v 152 (682)
..|..+.. | |..++. ...+. +. ......|.||||||+..... ..+...++.+++.||.+.+
T Consensus 87 ~~i~~l~~~gG~~T~~~~aL~~a~~~l~~~~~~~~~~~~~~iillTDG~~~~~--------~~~~~~~~~~~~~gi~v~~ 158 (223)
T 2b2x_A 87 VAANKIVQRGGRQTMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGESHDN--------YRLKQVIQDCEDENIQRFS 158 (223)
T ss_dssp HHHTTCCCCCCSSCCHHHHHHHHHHTTSSGGGTCCTTSEEEEEEEESSCCTTG--------GGHHHHHHHHHTTTEEEEE
T ss_pred HHHHhhhccCCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCC--------ccHHHHHHHHHHCCCEEEE
Confidence 66777643 2 333332 22222 22 12234677999999976421 2477888999999999999
Q ss_pred EeeccCCCCCCCcchhchhhHHHHHHhhh-cCCeeeehhch
Q 005694 153 IVVRASLSGEPHMRVIIENDNLLNIFSKK-SSAKTLFVDST 192 (682)
Q Consensus 153 i~i~~~~~~~~~~~~~~~ne~~l~~~~~~-~~g~~~~~~~a 192 (682)
|+++..... .... .......|+.++.. .+|.++...+.
T Consensus 159 igvG~~~~~-~~~~-~~~~~~~L~~iA~~p~~g~~~~~~~~ 197 (223)
T 2b2x_A 159 IAILGHYNR-GNLS-TEKFVEEIKSIASEPTEKHFFNVSDE 197 (223)
T ss_dssp EEECGGGC----CC-CHHHHHHHHTTSCSSGGGTEEEESST
T ss_pred EEecCcccc-cccc-chhHHHHHHHHhCCCchhcEEEeCCH
Confidence 999653210 0000 00113667888876 56777765544
No 11
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.51 E-value=2.9e-06 Score=83.72 Aligned_cols=160 Identities=19% Similarity=0.199 Sum_probs=99.2
Q ss_pred CeEEEEEEeCCCCcCC-ChhHHHHHHHHHHHHhHhcCCccEEEEEEecCCccCccccccCCCcCcEEEEeccCCCC----
Q 005694 5 REALLLLLDVSPSMHS-VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVVD---- 79 (682)
Q Consensus 5 Kea~vf~iDv~~sM~~-~l~~a~~~~~~~~~~ki~~~~~D~vgvvlfgt~~t~n~l~~e~~~y~nI~v~~~l~~~~---- 79 (682)
.--++|+||.|.||.. .+..+.+.+..++.+.-.....+.||||.|++.. .+..++..+.
T Consensus 15 ~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~---------------~~~~~~~~~~~~~~ 79 (223)
T 1q0p_A 15 SMNIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYP---------------KIWVKVSEADSSNA 79 (223)
T ss_dssp CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSE---------------EEEECTTSGGGGCH
T ss_pred ceeEEEEEeCCCCCchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCcc---------------ceeeccccCCCCCH
Confidence 4568999999999986 5778888888888764445678999999999752 2234444332
Q ss_pred HHHHHHhhcCCC-------CCCCChH--HHHHHHcCC--------CcccceEEEEeCCCCCCCCCCCCCchhhHHHHH--
Q 005694 80 GHLVQSLKHLPQ-------GTCAGDY--MLIKKYGET--------YKGKKHLCLITDALCPLKDPDVGTKEDQVSTIA-- 140 (682)
Q Consensus 80 ~~~l~~L~~l~~-------~~~~gD~--~li~~~~~~--------kk~~krI~L~Td~~~p~~~~~~~~~~~~~~~i~-- 140 (682)
......|..+.. +|..++. .....+... ....+.||||||+...... +...+...+
T Consensus 80 ~~~~~~i~~l~~~~~~~~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~-----~~~~~~~~~~~ 154 (223)
T 1q0p_A 80 DWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGG-----DPITVIDEIRD 154 (223)
T ss_dssp HHHHHHHHTCCTTSCSCTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSS-----CTHHHHHHHHH
T ss_pred HHHHHHHHhcccccccCCCCccHHHHHHHHHHHhhccccccccccccCCeEEEEECCCCCCCCC-----ChHHHHHHHHH
Confidence 234556777753 2223332 233333321 1245679999999765321 112222333
Q ss_pred --------HHHhhcCcEEEEEeeccCCCCCCCcchhchhhHHHHHHhhhcCC--eeeehhchHHh
Q 005694 141 --------RQMVAFGLRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSA--KTLFVDSTTSL 195 (682)
Q Consensus 141 --------~~l~~~~I~l~vi~i~~~~~~~~~~~~~~~ne~~l~~~~~~~~g--~~~~~~~a~~l 195 (682)
..+++.||.+.+||++.+ .+...|+.++...+| .++...+..++
T Consensus 155 ~~~~~~~~~~~~~~~i~i~~igvG~~-----------~~~~~L~~iA~~~~G~~~~~~~~~~~~L 208 (223)
T 1q0p_A 155 LLYIGKDRKNPREDYLDVYVFGVGPL-----------VNQVNINALASKKDNEQHVFKVKDMENL 208 (223)
T ss_dssp HTTCSCBTTBCCGGGEEEEEEECSSC-----------CCHHHHHHHSCCCTTCCCEEETTC----
T ss_pred HHhhhhhhhhcccCCcEEEEEEecCc-----------CCHHHHHHHhcCCCCCceEEEcCCHHHH
Confidence 234577899999999531 135778999988888 77777665443
No 12
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=98.49 E-value=2.2e-06 Score=83.83 Aligned_cols=154 Identities=10% Similarity=0.147 Sum_probs=101.4
Q ss_pred eEEEEEEeCCCCcCC-ChhHHHHHHHHHHHHhHhcCCccEEEEEEecCCccCccccccCCCcCcEEEEeccCC-CCHH-H
Q 005694 6 EALLLLLDVSPSMHS-VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKV-VDGH-L 82 (682)
Q Consensus 6 ea~vf~iDv~~sM~~-~l~~a~~~~~~~~~~ki~~~~~D~vgvvlfgt~~t~n~l~~e~~~y~nI~v~~~l~~-~~~~-~ 82 (682)
--++|+||.|.||.. .+..++..+..++.+.-++...++||||.|++.. .+..++.. -+.+ .
T Consensus 14 ~divfvlD~SgSm~~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~---------------~~~~~l~~~~~~~~~ 78 (202)
T 1ijb_A 14 LDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGS---------------HAYIGLKDRKRPSEL 78 (202)
T ss_dssp EEEEEEEECBTTSCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSE---------------EEEECTTCCCCHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCc---------------eEEEecCCCCCHHHH
Confidence 458999999999985 5788888888888865555678999999999752 22334442 2333 4
Q ss_pred HHHhhcCCC--C--CCCChH--HHHHH-HcC--CCcccceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhcCcEEEEE
Q 005694 83 VQSLKHLPQ--G--TCAGDY--MLIKK-YGE--TYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKNI 153 (682)
Q Consensus 83 l~~L~~l~~--~--~~~gD~--~li~~-~~~--~kk~~krI~L~Td~~~p~~~~~~~~~~~~~~~i~~~l~~~~I~l~vi 153 (682)
.+.|+++.. + |..|+. ...++ +.. +....|.|+||||+...-. ..+.+...++.+++.||.+..|
T Consensus 79 ~~~i~~l~~~gg~~T~~~~aL~~a~~~~~~~~~r~~~~~~iillTDG~~~~~------~~~~~~~~a~~l~~~gi~i~~i 152 (202)
T 1ijb_A 79 RRIASQVKYAGSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQR------MSRNFVRYVQGLKKKKVIVIPV 152 (202)
T ss_dssp HHHHHTCCCCCBSCCCHHHHHHHHHHHTSSSCSCTTSEEEEEEEECCCCCGG------GCTTHHHHHHHHHHTTEEEEEE
T ss_pred HHHHHhCcCCCCCcCcHHHHHHHHHHHHhccCCCCCCCeEEEEEccCCCCcc------chHHHHHHHHHHHHCCCEEEEE
Confidence 556777753 2 334443 22222 222 1234678999999976421 1245788889999999999999
Q ss_pred eeccCCCCCCCcchhchhhHHHHHHhhhc-CCeeeehhc
Q 005694 154 VVRASLSGEPHMRVIIENDNLLNIFSKKS-SAKTLFVDS 191 (682)
Q Consensus 154 ~i~~~~~~~~~~~~~~~ne~~l~~~~~~~-~g~~~~~~~ 191 (682)
|++.. .|...|+.++... +|.++...+
T Consensus 153 gvG~~-----------~~~~~L~~iA~~~~~~~~~~~~~ 180 (202)
T 1ijb_A 153 GIGPH-----------ANLKQIRLIEKQAPENKAFVLSS 180 (202)
T ss_dssp EESTT-----------SCHHHHHHHHHHCTTCCCEEESS
T ss_pred ecCCc-----------CCHHHHHHHhCCCCcccEEEeCC
Confidence 99531 2346788888743 455555443
No 13
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=98.48 E-value=2.4e-06 Score=84.21 Aligned_cols=161 Identities=15% Similarity=0.177 Sum_probs=101.3
Q ss_pred CeEEEEEEeCCCCcCCChhHHHHHHHHHHHHhHhcCCccEEEEEEecCCccCccccccCCCcCcEEEEeccCCC-C-HHH
Q 005694 5 REALLLLLDVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV-D-GHL 82 (682)
Q Consensus 5 Kea~vf~iDv~~sM~~~l~~a~~~~~~~~~~ki~~~~~D~vgvvlfgt~~t~n~l~~e~~~y~nI~v~~~l~~~-~-~~~ 82 (682)
.--++|+||.|.||. .+..+...+..++.+.-+..+.++||||.|++.. .+..++... + ...
T Consensus 7 ~~div~vlD~SgSm~-~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~---------------~~~~~l~~~~~~~~~ 70 (213)
T 1pt6_A 7 QLDIVIVLDGSNSIY-PWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENV---------------THEFNLNKYSSTEEV 70 (213)
T ss_dssp CEEEEEEEECCTTCC-CHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSE---------------EEEECTTTCSSHHHH
T ss_pred CccEEEEEECCCChh-hHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCc---------------cEEEeccccCCHHHH
Confidence 446899999999998 5788888888887754445789999999999742 223444322 2 235
Q ss_pred HHHhhcCCC--C--CCCChH--HHHHH-Hc----CCCcccceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhcCcEEE
Q 005694 83 VQSLKHLPQ--G--TCAGDY--MLIKK-YG----ETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMK 151 (682)
Q Consensus 83 l~~L~~l~~--~--~~~gD~--~li~~-~~----~~kk~~krI~L~Td~~~p~~~~~~~~~~~~~~~i~~~l~~~~I~l~ 151 (682)
+..|..+.. | |..+.. ...+. +. ......|.|+||||+..... ..+...++.+++.||.+.
T Consensus 71 ~~~i~~l~~~~G~~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~--------~~~~~~~~~~~~~gi~i~ 142 (213)
T 1pt6_A 71 LVAAKKIVQRGGRQTMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHDN--------HRLKKVIQDCEDENIQRF 142 (213)
T ss_dssp HHHHHTCCCCCCSSCCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCCSCS--------HHHHHHHHHHHHTTEEEE
T ss_pred HHHHHhccCCCCCcccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCC--------ccHHHHHHHHHHCCCEEE
Confidence 666777643 2 233332 22222 22 12234677999999965321 247778889999999999
Q ss_pred EEeeccCCC-CCCCcchhchhhHHHHHHhhh-cCCeeeehhch
Q 005694 152 NIVVRASLS-GEPHMRVIIENDNLLNIFSKK-SSAKTLFVDST 192 (682)
Q Consensus 152 vi~i~~~~~-~~~~~~~~~~ne~~l~~~~~~-~~g~~~~~~~a 192 (682)
.|+++.... +.... ......|+.++.. .+|.++...+.
T Consensus 143 ~igig~~~~~~~~~~---~~~~~~L~~iA~~~~~g~~~~~~~~ 182 (213)
T 1pt6_A 143 SIAILGSYNRGNLST---EKFVEEIKSIASEPTEKHFFNVSDE 182 (213)
T ss_dssp EEEECHHHHHTTCCC---HHHHHHHHHHSCSSHHHHEEEESSG
T ss_pred EEEeccccccccccc---hhhHHHHHHHhCCCchhcEEEeCCH
Confidence 999954210 00000 0113678888876 45666665544
No 14
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=98.39 E-value=2.6e-06 Score=87.26 Aligned_cols=153 Identities=17% Similarity=0.138 Sum_probs=101.1
Q ss_pred eEEEEEEeCCCCcCC-Ch-hHHHHHHHHHHHHhHhcCCccEEEEEEecCCccCccccccCCCcCcEEEEeccCCC---CH
Q 005694 6 EALLLLLDVSPSMHS-VL-PDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV---DG 80 (682)
Q Consensus 6 ea~vf~iDv~~sM~~-~l-~~a~~~~~~~~~~ki~~~~~D~vgvvlfgt~~t~n~l~~e~~~y~nI~v~~~l~~~---~~ 80 (682)
--++|+||.|.||.. .+ ..+...+..++.+..+....+.||||.|++. ..+..++... +.
T Consensus 19 ~DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~---------------~~~~~~l~~~~~~~~ 83 (266)
T 4hqo_A 19 VDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSY---------------TTELIRLGSGQSIDK 83 (266)
T ss_dssp EEEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSS---------------EEEEECTTSHHHHCH
T ss_pred eeEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCC---------------cceEEecCCCCccCH
Confidence 358999999999984 45 4788888888887766778999999999985 2234555544 22
Q ss_pred -HHHHHhhcCC----C--CCCCChH--HHHHHHcC---CCcccceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhcCc
Q 005694 81 -HLVQSLKHLP----Q--GTCAGDY--MLIKKYGE---TYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGL 148 (682)
Q Consensus 81 -~~l~~L~~l~----~--~~~~gD~--~li~~~~~---~kk~~krI~L~Td~~~p~~~~~~~~~~~~~~~i~~~l~~~~I 148 (682)
..+..|+.+. . +|..|+. .....+.. .....+.||||||+... +...+...++.+++.||
T Consensus 84 ~~~~~~i~~l~~~~~~~G~T~~~~AL~~a~~~l~~~~~r~~~~~~iIllTDG~~~--------d~~~~~~~a~~l~~~gi 155 (266)
T 4hqo_A 84 RQALSKVTELRKTYTPYGTTSMTAALDEVQKHLNDRVNREKAIQLVILMTDGVPN--------SKYRALEVANKLKQRNV 155 (266)
T ss_dssp HHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHTTCSCTTSEEEEEEEECSCCS--------CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHhhccccCCCCeEEEEEccCCCC--------CchHHHHHHHHHHHCCC
Confidence 2344555552 2 3444543 22233322 22346889999999663 12468888999999999
Q ss_pred EEEEEeeccCCCCCCCcchhchhhHHHHHHhhhc--C--Ceeeehhch
Q 005694 149 RMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKS--S--AKTLFVDST 192 (682)
Q Consensus 149 ~l~vi~i~~~~~~~~~~~~~~~ne~~l~~~~~~~--~--g~~~~~~~a 192 (682)
.+..||++.. .+..+|+.++... + +.++.+.+.
T Consensus 156 ~i~~iGiG~~-----------~~~~~L~~iA~~~~~~g~~~~~~~~d~ 192 (266)
T 4hqo_A 156 RLAVIGIGQG-----------INHQFNRLIAGCRPREPNCKFYSYADW 192 (266)
T ss_dssp EEEEEECSSS-----------CCHHHHHHHHTCCTTCSSCTTEECSCH
T ss_pred EEEEEecCcc-----------cCHHHHHHhhCCCCCCCCCCeEEecCH
Confidence 9999999541 1346778887653 2 245544443
No 15
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=98.35 E-value=3.1e-06 Score=87.32 Aligned_cols=143 Identities=15% Similarity=0.153 Sum_probs=94.0
Q ss_pred CeEEEEEEeCCCCcCC-Ch-hHHHHHHHHHHHHhHhcCCccEEEEEEecCCccCccccccCCCcCcEEEEeccCCC---C
Q 005694 5 REALLLLLDVSPSMHS-VL-PDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV---D 79 (682)
Q Consensus 5 Kea~vf~iDv~~sM~~-~l-~~a~~~~~~~~~~ki~~~~~D~vgvvlfgt~~t~n~l~~e~~~y~nI~v~~~l~~~---~ 79 (682)
+--+||+||.|.||.. .+ ..+...+..++.+.-.....+.||||.|+++. .+..++... +
T Consensus 21 ~~div~vlD~SgSM~~~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~---------------~~~~~l~~~~~~~ 85 (281)
T 4hqf_A 21 EVDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNA---------------REIIRLHSDASKN 85 (281)
T ss_dssp CEEEEEEEECCCCSSTHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTE---------------EEEEEECSSCSSC
T ss_pred ceeEEEEEeCCCCcCHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCc---------------eEEEEccccCccC
Confidence 3458999999999985 34 67788888888765556679999999999752 223344333 2
Q ss_pred H-HHHHHhhcCC-----C-CCCCChH--HHHHHHcC---CCcccceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhcC
Q 005694 80 G-HLVQSLKHLP-----Q-GTCAGDY--MLIKKYGE---TYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFG 147 (682)
Q Consensus 80 ~-~~l~~L~~l~-----~-~~~~gD~--~li~~~~~---~kk~~krI~L~Td~~~p~~~~~~~~~~~~~~~i~~~l~~~~ 147 (682)
. ..+..|..+. . +|..++. .....+.. .....+.||||||+... +...+...++.++..|
T Consensus 86 ~~~l~~~i~~l~~~~~~~G~T~~~~aL~~a~~~l~~~~~r~~~~~~iillTDG~~~--------d~~~~~~~~~~l~~~g 157 (281)
T 4hqf_A 86 KEKALIIIKSLLSTNLPYGKTSLTDALLQVRKHLNDRINRENANQLVVILTDGIPD--------SIQDSLKESRKLSDRG 157 (281)
T ss_dssp HHHHHHHHHHHHHTTGGGCSCCHHHHHHHHHHHHHTSCCCTTCEEEEEEEESSCCS--------CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhccCCCCCccHHHHHHHHHHHHHhccCCCCCCEEEEEEecCCCC--------CcHHHHHHHHHHHHCC
Confidence 2 2334455442 2 3444553 22222221 12246789999999653 1246788899999999
Q ss_pred cEEEEEeeccCCCCCCCcchhchhhHHHHHHhhh
Q 005694 148 LRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKK 181 (682)
Q Consensus 148 I~l~vi~i~~~~~~~~~~~~~~~ne~~l~~~~~~ 181 (682)
|.+..||++.. .+..+|+.++..
T Consensus 158 v~i~~igiG~~-----------~~~~~L~~iA~~ 180 (281)
T 4hqf_A 158 VKIAVFGIGQG-----------INVAFNRFLVGC 180 (281)
T ss_dssp CEEEEEEESSS-----------CCHHHHHHHTTS
T ss_pred CEEEEEeCCCc-----------cCHHHHHhhhCC
Confidence 99999999542 234677888765
No 16
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.34 E-value=4.3e-06 Score=80.06 Aligned_cols=149 Identities=15% Similarity=0.139 Sum_probs=91.7
Q ss_pred eEEEEEEeCCCCcCCChhHHHHHHHHHHHHhHhcCCccEEEEEEecCCccCccccccCCCcCcEEEEeccCCCCHHH---
Q 005694 6 EALLLLLDVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVVDGHL--- 82 (682)
Q Consensus 6 ea~vf~iDv~~sM~~~l~~a~~~~~~~~~~ki~~~~~D~vgvvlfgt~~t~n~l~~e~~~y~nI~v~~~l~~~~~~~--- 82 (682)
--++|+||.|.||...+......+..++.+- -++.++||||.|++.. .+..++.. +.+.
T Consensus 8 ~div~vlD~SgSM~~~~~~~~~~~~~~~~~~--~~~~~~v~lv~f~~~~---------------~~~~~l~~-~~~~~~~ 69 (185)
T 3n2n_F 8 FDLYFILDKSGSVLHHWNEIYYFVEQLAHKF--ISPQLRMSFIVFSTRG---------------TTLMKLTE-DREQIRQ 69 (185)
T ss_dssp EEEEEEEECSGGGGGGHHHHHHHHHHHHHHC--CCTTEEEEEEEESSSE---------------EEEEEEEC-CHHHHHH
T ss_pred eeEEEEEeCCCChhhhHHHHHHHHHHHHHHh--CCCCcEEEEEEEecCc---------------eEEeccCC-CHHHHHH
Confidence 3489999999999877766777777777764 3479999999998742 22335543 4332
Q ss_pred -HHHhhcCC-C-CCCCChH--HHHHHH----cCCCcccceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhcCcEEEEE
Q 005694 83 -VQSLKHLP-Q-GTCAGDY--MLIKKY----GETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKNI 153 (682)
Q Consensus 83 -l~~L~~l~-~-~~~~gD~--~li~~~----~~~kk~~krI~L~Td~~~p~~~~~~~~~~~~~~~i~~~l~~~~I~l~vi 153 (682)
+..|..+. . +|..++. ...+.. .......+.|+||||+...-. ........++.+++.||.+..|
T Consensus 70 ~i~~l~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~iillTDG~~~~~------~~~~~~~~~~~~~~~gi~i~~i 143 (185)
T 3n2n_F 70 GLEELQKVLPGGDTYMHEGFERASEQIYYENRQGYRTASVIIALTDGELHED------LFFYSEREANRSRDLGAIVYAV 143 (185)
T ss_dssp HHHHHHTCCCCSCCCHHHHHHHHHHHHHHHHTTCBCEEEEEEEEECCCCCHH------HHHHHHHHHHHHHHTTEEEEEE
T ss_pred HHHHHhhhcCCCCccHHHHHHHHHHHHhhccccCCCCCcEEEEEcCCCCCCC------cccchHHHHHHHHHCCCEEEEE
Confidence 33344331 2 3444443 222211 222235688999999976311 0113467889999999999999
Q ss_pred eeccCCCCCCCcchhchhhHHHHHHhhhcCCeeeehhc
Q 005694 154 VVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTLFVDS 191 (682)
Q Consensus 154 ~i~~~~~~~~~~~~~~~ne~~l~~~~~~~~g~~~~~~~ 191 (682)
|++. .+...|+.++.. .+.++...+
T Consensus 144 gvg~------------~~~~~L~~iA~~-~~~~~~~~~ 168 (185)
T 3n2n_F 144 GVKD------------FNETQLARIADS-KDHVFPVND 168 (185)
T ss_dssp ECSS------------CCHHHHTTTSSS-GGGEEEHHH
T ss_pred Eecc------------CCHHHHHHHhCC-CCCeEEecc
Confidence 9942 123556666644 355565554
No 17
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=98.30 E-value=1.3e-05 Score=78.11 Aligned_cols=154 Identities=14% Similarity=0.147 Sum_probs=98.4
Q ss_pred CeEEEEEEeCCCCcCCChhHHHHHHHHHHHHhHhcCCccEEEEEEecCCccCccccccCCCcCcEEEEeccCCC-CH-HH
Q 005694 5 REALLLLLDVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV-DG-HL 82 (682)
Q Consensus 5 Kea~vf~iDv~~sM~~~l~~a~~~~~~~~~~ki~~~~~D~vgvvlfgt~~t~n~l~~e~~~y~nI~v~~~l~~~-~~-~~ 82 (682)
.--+||+||+|.||. .++.++..+..++.+.-+....++||||.|++.. .+..++... +. ..
T Consensus 6 ~~div~vlD~SgSm~-~~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~---------------~~~~~l~~~~~~~~~ 69 (200)
T 1v7p_C 6 LIDVVVVCDESNSIY-PWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNP---------------RVVFNLNTYKTKEEM 69 (200)
T ss_dssp CEEEEEEEECCTTCC-CHHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSE---------------EEEECTTTCSSHHHH
T ss_pred cccEEEEEECCCCcc-cHHHHHHHHHHHHHhcCCCCCceEEEEEEECCCc---------------eEEEeCCCcCCHHHH
Confidence 446899999999998 5888888888888865455679999999999752 233455432 32 35
Q ss_pred HHHhhcCCC--C--CCCChH--HHHHH-HcC----CCcccceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhcCcEEE
Q 005694 83 VQSLKHLPQ--G--TCAGDY--MLIKK-YGE----TYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMK 151 (682)
Q Consensus 83 l~~L~~l~~--~--~~~gD~--~li~~-~~~----~kk~~krI~L~Td~~~p~~~~~~~~~~~~~~~i~~~l~~~~I~l~ 151 (682)
+..|..+.. | |..++. ...+. +.. +....|.|+||||+... + ...+...++.+++.||.+.
T Consensus 70 ~~~i~~l~~~~G~~T~~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~~~-~-------~~~~~~~~~~~~~~gi~i~ 141 (200)
T 1v7p_C 70 IVATSQTSQYGGDLTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESH-D-------GSMLKAVIDQCNHDNILRF 141 (200)
T ss_dssp HHHHHHCCCCCCSCCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCS-C-------GGGHHHHHHHHHHTTEEEE
T ss_pred HHHHHhhhccCCCCCcHHHHHHHHHHhhcccccCCCCCCCeEEEEEccCCCC-C-------cccHHHHHHHHHHCCCEEE
Confidence 566777743 2 444443 22332 321 12346779999999764 1 1346778889999999999
Q ss_pred EEeeccCCC-CCCCcchhchhhHHHHHHhhhcCCe
Q 005694 152 NIVVRASLS-GEPHMRVIIENDNLLNIFSKKSSAK 185 (682)
Q Consensus 152 vi~i~~~~~-~~~~~~~~~~ne~~l~~~~~~~~g~ 185 (682)
.|+++.... ++... ......|+.++...+|.
T Consensus 142 ~igvg~~~~~~~~~~---~~~~~~L~~iA~~~~g~ 173 (200)
T 1v7p_C 142 GIAVLGYLNRNALDT---KNLIKEIKAIASIPTER 173 (200)
T ss_dssp EEEECHHHHHTTCCC---HHHHHHHHHHSCSSHHH
T ss_pred EEEecccccccccch---hhHHHHHHHHhCCccHh
Confidence 999942100 00000 01123488888776654
No 18
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=98.27 E-value=1.3e-05 Score=77.24 Aligned_cols=144 Identities=17% Similarity=0.213 Sum_probs=93.0
Q ss_pred CeEEEEEEeCCCCcC-CChhHHHHHHHHHHHHhHhcCCccEEEEEEecCCccCccccccCCCcCcEEEEeccC-CCCHH-
Q 005694 5 REALLLLLDVSPSMH-SVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIK-VVDGH- 81 (682)
Q Consensus 5 Kea~vf~iDv~~sM~-~~l~~a~~~~~~~~~~ki~~~~~D~vgvvlfgt~~t~n~l~~e~~~y~nI~v~~~l~-~~~~~- 81 (682)
.--++|+||.|.||. ..++.++..+..++.+.-+....++||||.|++.. .+..++. ..+.+
T Consensus 5 ~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~---------------~~~~~l~~~~~~~~ 69 (189)
T 1atz_A 5 PLDVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSIT---------------TIDVPWNVVPEKAH 69 (189)
T ss_dssp CEEEEEEEECSSSSCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSE---------------EEEECTTCCCCHHH
T ss_pred ceeEEEEEeCCCCCChhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcc---------------eEEEecCCCCCHHH
Confidence 346899999999998 45788888888888764334567999999998742 2334543 23444
Q ss_pred HHHHhhcCCC---CCCCChH--HHHHHHcCC----Cc-ccceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhcCcEEE
Q 005694 82 LVQSLKHLPQ---GTCAGDY--MLIKKYGET----YK-GKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMK 151 (682)
Q Consensus 82 ~l~~L~~l~~---~~~~gD~--~li~~~~~~----kk-~~krI~L~Td~~~p~~~~~~~~~~~~~~~i~~~l~~~~I~l~ 151 (682)
....|..+.. +|..++. ...+.+... +. ..|.|+||||+... +.+...++.+++.||.+.
T Consensus 70 ~~~~i~~l~~~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~vivltdg~~~----------~~~~~~~~~~~~~gi~v~ 139 (189)
T 1atz_A 70 LLSLVDVMQREGGPSQIGDALGFAVRYLTSEMHGARPGASKAVVILVTDVSV----------DSVDAAADAARSNRVTVF 139 (189)
T ss_dssp HHHHHHTCCCCCCCCCHHHHHHHHHHHHHSCCTTCCTTSEEEEEEEECSCCS----------SCCHHHHHHHHHTTEEEE
T ss_pred HHHHHHhCcCCCCcchHHHHHHHHHHHHhccccCCCCCCCcEEEEEeCCCCC----------chHHHHHHHHHHCCCEEE
Confidence 3445677653 2434443 233333211 22 24558899998542 125677888999999999
Q ss_pred EEeeccCCCCCCCcchhchhhHHHHHHhhhcCC
Q 005694 152 NIVVRASLSGEPHMRVIIENDNLLNIFSKKSSA 184 (682)
Q Consensus 152 vi~i~~~~~~~~~~~~~~~ne~~l~~~~~~~~g 184 (682)
+||++.. .+...|+.++...++
T Consensus 140 ~igvG~~-----------~~~~~L~~iA~~~~~ 161 (189)
T 1atz_A 140 PIGIGDR-----------YDAAQLRILAGPAGD 161 (189)
T ss_dssp EEEESSS-----------SCHHHHHHHTGGGGG
T ss_pred EEEcCCc-----------CCHHHHHHHHCCCcc
Confidence 9999542 124567888776543
No 19
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=98.27 E-value=1.1e-05 Score=77.00 Aligned_cols=130 Identities=15% Similarity=0.141 Sum_probs=86.6
Q ss_pred CeEEEEEEeCCCCcCC-ChhHHHHHHHHHHHHhHhcCCccEEEEEEecCCccCccccccCCCcCcEEEEeccCCC---CH
Q 005694 5 REALLLLLDVSPSMHS-VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV---DG 80 (682)
Q Consensus 5 Kea~vf~iDv~~sM~~-~l~~a~~~~~~~~~~ki~~~~~D~vgvvlfgt~~t~n~l~~e~~~y~nI~v~~~l~~~---~~ 80 (682)
+--+||+||.|.||.. .+..+.+.+..++.+.-+....++||||.|++.. .+..++... +.
T Consensus 17 ~~divfvlD~SgSm~~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~---------------~~~~~l~~~~~~~~ 81 (178)
T 2xgg_A 17 QLDICFLIDSSGSIGIQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDV---------------HLQWDLQSPNAVDK 81 (178)
T ss_dssp CEEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSE---------------EEEECTTSGGGSCH
T ss_pred CeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCce---------------EEEEeCCCCCccCH
Confidence 4568999999999964 5778888888888764334567999999999752 233455432 33
Q ss_pred -HHHHHhhcCC-C--CCCCChH--HHHHH-HcC----CCcccceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhcCcE
Q 005694 81 -HLVQSLKHLP-Q--GTCAGDY--MLIKK-YGE----TYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLR 149 (682)
Q Consensus 81 -~~l~~L~~l~-~--~~~~gD~--~li~~-~~~----~kk~~krI~L~Td~~~p~~~~~~~~~~~~~~~i~~~l~~~~I~ 149 (682)
...+.|..+. . +|..+.. ...+. +.. +....+.||||||+... ....+...++.+++.||.
T Consensus 82 ~~~~~~i~~l~~~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~--------~~~~~~~~~~~l~~~gi~ 153 (178)
T 2xgg_A 82 QLAAHAVLDMPYKKGSTNTSDGLKACKQILFTGSRPGREHVPKLVIGMTDGESD--------SDFRTVRAAKEIRELGGI 153 (178)
T ss_dssp HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCTTCTTSCEEEEEEESSCCC--------HHHHHSHHHHHHHHTTCE
T ss_pred HHHHHHHHhCCCCCCCccHHHHHHHHHHHhcCcccCCCCCCCEEEEEEcCCCCC--------CCccHHHHHHHHHHCCCE
Confidence 3455677765 2 2333332 22222 221 22346789999998653 113477888999999999
Q ss_pred EEEEeecc
Q 005694 150 MKNIVVRA 157 (682)
Q Consensus 150 l~vi~i~~ 157 (682)
+.+||++.
T Consensus 154 v~~igvG~ 161 (178)
T 2xgg_A 154 VTVLAVGH 161 (178)
T ss_dssp EEEEECC-
T ss_pred EEEEEcCC
Confidence 99999965
No 20
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=98.26 E-value=4.4e-06 Score=80.98 Aligned_cols=157 Identities=15% Similarity=0.128 Sum_probs=95.5
Q ss_pred CeEEEEEEeCCCCcCC-ChhHHHHHHHHHHHHhHhcCCccEEEEEEecCCccCccccccCCCcCcEEEEeccCCCC--HH
Q 005694 5 REALLLLLDVSPSMHS-VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVVD--GH 81 (682)
Q Consensus 5 Kea~vf~iDv~~sM~~-~l~~a~~~~~~~~~~ki~~~~~D~vgvvlfgt~~t~n~l~~e~~~y~nI~v~~~l~~~~--~~ 81 (682)
.--++|+||.|.||.. .+..++..+..++.... .+.++||||.|++.. .+..++.... ..
T Consensus 9 ~~div~vlD~SgSM~~~~~~~~~~~~~~~~~~l~--~~~~~v~lv~f~~~~---------------~~~~~~~~~~~~~~ 71 (198)
T 1n3y_A 9 EQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQ--RPSTQFSLMQFSNKF---------------QTHFTFEEFRRSSN 71 (198)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHHHHHHTTSC--TTTEEEEEEEESSSE---------------EEEECHHHHHHCSS
T ss_pred CeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEEeCCCc---------------cEEEecCccCCHHH
Confidence 3468999999999987 46667777777776533 799999999999852 1222321100 11
Q ss_pred HHHHhhcCCC---CCCCChH--HHHHH-HcC----CCcccceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhcCcEEE
Q 005694 82 LVQSLKHLPQ---GTCAGDY--MLIKK-YGE----TYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMK 151 (682)
Q Consensus 82 ~l~~L~~l~~---~~~~gD~--~li~~-~~~----~kk~~krI~L~Td~~~p~~~~~~~~~~~~~~~i~~~l~~~~I~l~ 151 (682)
....|..+.. +|..++. ...+. +.. +....+.||||||+....+. ......++.++..||.+.
T Consensus 72 ~~~~i~~l~~~~g~T~~~~al~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~-------~~~~~~~~~~~~~gi~i~ 144 (198)
T 1n3y_A 72 PLSLLASVHQLQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDS-------LDYKDVIPMADAAGIIRY 144 (198)
T ss_dssp GGGGGTTCCCCCSCBCHHHHHHHHHTTTTSGGGTCCTTSEEEEEEEESSCCBSCS-------SCHHHHHHHHHHTTCEEE
T ss_pred HHHHHhcCcCCCCCchHHHHHHHHHHHHhCcccCCCCCCceEEEEECCCCCCCCc-------ccHHHHHHHHHHCCCEEE
Confidence 2333444432 1222222 12212 111 12346789999999764221 235677888999999999
Q ss_pred EEeeccCCCCCCCcchhchhhHHHHHHhhhcCCee-eehhch
Q 005694 152 NIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKT-LFVDST 192 (682)
Q Consensus 152 vi~i~~~~~~~~~~~~~~~ne~~l~~~~~~~~g~~-~~~~~a 192 (682)
+|+++.... ...+...|+.++...+|.+ +...+.
T Consensus 145 ~igvG~~~~-------~~~~~~~L~~iA~~~~g~~~~~~~~~ 179 (198)
T 1n3y_A 145 AIGVGLAFQ-------NRNSWKELNDIASKPSQEHIFKVEDF 179 (198)
T ss_dssp EEEESGGGG-------SSTTHHHHHHHSCSSSGGGEEEESSG
T ss_pred EEEcccccc-------ccccHHHHHHHHcCCCcccEEEeCCH
Confidence 999964210 0124578899998877764 554443
No 21
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=98.26 E-value=6.9e-06 Score=78.33 Aligned_cols=147 Identities=13% Similarity=0.124 Sum_probs=89.1
Q ss_pred CeEEEEEEeCCCCcCCChhHHHHHHHHHHHHhHhcCCccEEEEEEecCCccCccccccCCCcCcEEEEeccCCCCHHH--
Q 005694 5 REALLLLLDVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVVDGHL-- 82 (682)
Q Consensus 5 Kea~vf~iDv~~sM~~~l~~a~~~~~~~~~~ki~~~~~D~vgvvlfgt~~t~n~l~~e~~~y~nI~v~~~l~~~~~~~-- 82 (682)
.--++|+||.|.||..........+..++..- + ++.|.||||.|++.. .+..++. .+...
T Consensus 6 ~~dvv~vlD~SgSM~~~~~~~~~~~~~~~~~~-~-~~~~~v~lv~f~~~~---------------~~~~~~~-~~~~~~~ 67 (182)
T 1shu_X 6 AFDLYFVLDKSGSVANNWIEIYNFVQQLAERF-V-SPEMRLSFIVFSSQA---------------TIILPLT-GDRGKIS 67 (182)
T ss_dssp CEEEEEEEECSGGGGGGHHHHHHHHHHHHHHC-C-CTTEEEEEEEESSSE---------------EEEEEEE-CCHHHHH
T ss_pred ceeEEEEEECCCCcccCHHHHHHHHHHHHHHh-c-CCCceEEEEEeCCCc---------------eEEECCC-CCHHHHH
Confidence 45689999999999875444445555555543 2 389999999998752 1223333 23332
Q ss_pred --HHHhhcCCC--CCCCChH--HHHHHHcC--CCcccceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhcCcEEEEEe
Q 005694 83 --VQSLKHLPQ--GTCAGDY--MLIKKYGE--TYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKNIV 154 (682)
Q Consensus 83 --l~~L~~l~~--~~~~gD~--~li~~~~~--~kk~~krI~L~Td~~~p~~~~~~~~~~~~~~~i~~~l~~~~I~l~vi~ 154 (682)
+..|..+.. +|..++. ...+.+.. .....+.||||||+...-. ....+...++.++..||.+.+||
T Consensus 68 ~~l~~l~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~iiliTDG~~~~~------~~~~~~~~~~~~~~~~i~i~~ig 141 (182)
T 1shu_X 68 KGLEDLKRVSPVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGL------VPSYAEKEAKISRSLGASVYCVG 141 (182)
T ss_dssp HHHHHHHTCCCCSCCCHHHHHHHHHHHHHHHTGGGSCEEEEEEECCCCCTT------HHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHhcccCCCCCCchHHHHHHHHHHHHHhccCCCCCeEEEEECCCCcCCC------CchhHHHHHHHHHhCCCEEEEEe
Confidence 333443322 2333332 22222211 1235788999999975311 12345667888999999999999
Q ss_pred eccCCCCCCCcchhchhhHHHHHHhhhcCCeee
Q 005694 155 VRASLSGEPHMRVIIENDNLLNIFSKKSSAKTL 187 (682)
Q Consensus 155 i~~~~~~~~~~~~~~~ne~~l~~~~~~~~g~~~ 187 (682)
++. .+...|+.++...+|.++
T Consensus 142 vg~------------~~~~~L~~ia~~~~~~~~ 162 (182)
T 1shu_X 142 VLD------------FEQAQLERIADSKEQVFP 162 (182)
T ss_dssp CSS------------CCHHHHHHHSSSGGGEEE
T ss_pred CCc------------CCHHHHHHHhCCCCceEE
Confidence 942 124668888877666543
No 22
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=98.24 E-value=1.6e-05 Score=87.91 Aligned_cols=153 Identities=12% Similarity=0.091 Sum_probs=97.9
Q ss_pred CeEEEEEEeCCCCcC---CChhHHHHHHHHHHHHhHhcCCccEEEEEEecCCccCccccccCCCcCcEEEEeccC----C
Q 005694 5 REALLLLLDVSPSMH---SVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIK----V 77 (682)
Q Consensus 5 Kea~vf~iDv~~sM~---~~l~~a~~~~~~~~~~ki~~~~~D~vgvvlfgt~~t~n~l~~e~~~y~nI~v~~~l~----~ 77 (682)
.-.++|+||+|.||. ..+..++.++..++.+ -.+.|.+|||.|++.. .++.++. .
T Consensus 77 ~~dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~---L~~~drv~lV~Fs~~a---------------~~~~p~t~~l~~ 138 (464)
T 4fx5_A 77 ENVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDT---LTDGAFFAVVAGTEGA---------------RVVYPTGGQLLR 138 (464)
T ss_dssp CEEEEEEEECCGGGGTTTHHHHHHHHHHHHHHHH---SCTTCEEEEEEESSSE---------------EEEESSSSSCEE
T ss_pred CceEEEEEEcCcccCCCCchHHHHHHHHHHHHHh---CCCCCEEEEEEEcCce---------------EEEecCCccccc
Confidence 356999999999997 3477788888888774 3589999999998752 2233332 2
Q ss_pred CCHH----HHHHhhcCCC--CCCCChH--HHHHHHcCCCcccceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhcCcE
Q 005694 78 VDGH----LVQSLKHLPQ--GTCAGDY--MLIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLR 149 (682)
Q Consensus 78 ~~~~----~l~~L~~l~~--~~~~gD~--~li~~~~~~kk~~krI~L~Td~~~p~~~~~~~~~~~~~~~i~~~l~~~~I~ 149 (682)
++.. ....|..+.. +|..+++ ..++.+.......+.||||||+..... ....+..... ....+|.
T Consensus 139 ~~~~~~~~l~~~I~~L~~~GgT~l~~aL~~A~~~l~~~~~~~~~IILLTDG~~~~~------~~~~l~~~~~-a~~~~i~ 211 (464)
T 4fx5_A 139 ADYQSRAAAKEAVGRLHANGGTAMGRWLAQAGRIFDTAPSAIKHAILLTDGKDESE------TPADLARAIQ-SSIGNFT 211 (464)
T ss_dssp CSHHHHHHHHHHHHTCCCCSCCCHHHHHHHHHHHHTTCTTSEEEEEEEESSCCTTS------CHHHHHHHHH-HHTTTCE
T ss_pred CCHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCCCC------ChHHHHHHHH-HhcCCCe
Confidence 2333 3444566644 2334443 333444433334688999999975432 1123333332 2357899
Q ss_pred EEEEeeccCCCCCCCcchhchhhHHHHHHhhhcCCeeeehhchH
Q 005694 150 MKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTLFVDSTT 193 (682)
Q Consensus 150 l~vi~i~~~~~~~~~~~~~~~ne~~l~~~~~~~~g~~~~~~~a~ 193 (682)
+..||++.+ .|..+|+.++...+|.++.+.+..
T Consensus 212 i~tiGiG~~-----------~d~~~L~~IA~~tgG~~~~v~d~~ 244 (464)
T 4fx5_A 212 ADCRGIGED-----------WEPKELRKIADALLGTVGIIRDPA 244 (464)
T ss_dssp EEEEEESSS-----------SCHHHHHHHHHHTTCCEEEESSGG
T ss_pred EEEEEeCCc-----------cCHHHHHHHHHhCCCEEEEcCCHH
Confidence 999999542 235789999999999887665553
No 23
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=98.20 E-value=1.3e-05 Score=89.23 Aligned_cols=154 Identities=18% Similarity=0.219 Sum_probs=97.6
Q ss_pred EEEEEEeCCCCcCC-ChhHHHHHHHHHHHHhHhcCCccEEEEEEecCCccCccccccCCCcCcEEEEeccCCC---C-HH
Q 005694 7 ALLLLLDVSPSMHS-VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV---D-GH 81 (682)
Q Consensus 7 a~vf~iDv~~sM~~-~l~~a~~~~~~~~~~ki~~~~~D~vgvvlfgt~~t~n~l~~e~~~y~nI~v~~~l~~~---~-~~ 81 (682)
-+||+||.|.||.. .++.++..+..++.+.-.....++||||.|++.. .+..++..+ + ..
T Consensus 3 div~vlD~SgSM~~~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~---------------~~~~~~~~~~~~~~~~ 67 (497)
T 1rrk_A 3 NIYLVLDGSDSIGASNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYP---------------KIWVKVSEADSSNADW 67 (497)
T ss_dssp EEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSE---------------EEEECTTSGGGGCHHH
T ss_pred eEEEEEECCCCcchhhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCc---------------eEeeccccccccCHHH
Confidence 48999999999975 5778888888888765456778999999999642 123333332 2 23
Q ss_pred HHHHhhcCCC-------CCCCChH--HHHHHHcCC--------CcccceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHh
Q 005694 82 LVQSLKHLPQ-------GTCAGDY--MLIKKYGET--------YKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMV 144 (682)
Q Consensus 82 ~l~~L~~l~~-------~~~~gD~--~li~~~~~~--------kk~~krI~L~Td~~~p~~~~~~~~~~~~~~~i~~~l~ 144 (682)
....|.++.. +|..++. ...+.+... ....+.||||||+...... +....++.++
T Consensus 68 ~~~~l~~l~~~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~--------~~~~~~~~~~ 139 (497)
T 1rrk_A 68 VTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGG--------DPITVIDEIR 139 (497)
T ss_dssp HHHHHHHCCGGGSCCTTCCCHHHHHHHHHHHHCCC------CGGGCEEEEEEEECSCCCSSS--------CTHHHHHHHH
T ss_pred HHHHHHhCcCccccccCccCHHHHHHHHHHHhhhhhccccccccccceEEEEEeCCCcccCC--------ChhHHHHHHH
Confidence 4555666653 3444443 233333211 2246789999999765331 1233333333
Q ss_pred h-------------cCcEEEEEeeccCCCCCCCcchhchhhHHHHHHhhhcCC--eeeehhchHH
Q 005694 145 A-------------FGLRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSA--KTLFVDSTTS 194 (682)
Q Consensus 145 ~-------------~~I~l~vi~i~~~~~~~~~~~~~~~ne~~l~~~~~~~~g--~~~~~~~a~~ 194 (682)
+ .||.+.+|+++.+ .+...|+.++...+| .++.+.+..+
T Consensus 140 ~~~~~~~~~~~~~~~~i~v~~igvG~~-----------~~~~~L~~iA~~~~g~~~~~~~~~~~~ 193 (497)
T 1rrk_A 140 DLLYIGKDRKNPREDYLDVYVFGVGPL-----------VNQVNINALASKKDNEQHVCKVKDMEC 193 (497)
T ss_dssp HHTTCSSCC-CCCGGGEEEEEEECSSS-----------CCHHHHHHHSCCCTTCCCEEETTCHHH
T ss_pred HHhhhhcccccchhcCeeEEEecCCCc-----------cCHHHHHHHhcCCCCcceEEEeCCHHH
Confidence 3 3999999998542 234778999988888 7777666543
No 24
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=98.17 E-value=7.8e-06 Score=91.44 Aligned_cols=159 Identities=19% Similarity=0.163 Sum_probs=99.7
Q ss_pred CeEEEEEEeCCCCcCC-ChhHHHHHHHHHHHHhHhcCCccEEEEEEecCCccCccccccCCCcCcEEEEeccCCC---CH
Q 005694 5 REALLLLLDVSPSMHS-VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV---DG 80 (682)
Q Consensus 5 Kea~vf~iDv~~sM~~-~l~~a~~~~~~~~~~ki~~~~~D~vgvvlfgt~~t~n~l~~e~~~y~nI~v~~~l~~~---~~ 80 (682)
+--+||+||.|.||.. .++.+++.+..++.+.-..++.|+||||.|+++. .+..++..+ +.
T Consensus 9 ~~divfvlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~---------------~~~~~l~~~~~~~~ 73 (509)
T 2odp_A 9 HLNLYLLLDASQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFASEP---------------KVLMSVLNDNSRDM 73 (509)
T ss_dssp EEEEEEEEECSTTSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSE---------------EEEECTTSGGGGCH
T ss_pred CeeEEEEEeCCCccchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCC---------------ceeEeccCCCCCCH
Confidence 4568999999999986 5788888999888876666899999999998742 234455432 33
Q ss_pred H-HHHHhhcCCCC-------CCCChH--HHHHHH---cC--C------CcccceEEEEeCCCCCCCCCCCCCchhhHHHH
Q 005694 81 H-LVQSLKHLPQG-------TCAGDY--MLIKKY---GE--T------YKGKKHLCLITDALCPLKDPDVGTKEDQVSTI 139 (682)
Q Consensus 81 ~-~l~~L~~l~~~-------~~~gD~--~li~~~---~~--~------kk~~krI~L~Td~~~p~~~~~~~~~~~~~~~i 139 (682)
+ .++.|..+... |..+.. ...+.+ .. . ....+.||||||+...... +...+...
T Consensus 74 ~~~~~~l~~l~~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~-----~~~~~~~~ 148 (509)
T 2odp_A 74 TEVISSLENANYKDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGG-----SPKTAVDH 148 (509)
T ss_dssp HHHHHHHHTCCGGGGTTCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSS-----CTHHHHHH
T ss_pred HHHHHHHHhcccccCCCCCCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCccCCC-----ChhHHHHH
Confidence 3 45557777432 333332 111111 10 0 0135779999999765321 11222222
Q ss_pred HHH-Hh-----hcCcEEEEEeeccCCCCCCCcchhchhhHHHHHHhhhcCCe--eeehhchH
Q 005694 140 ARQ-MV-----AFGLRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAK--TLFVDSTT 193 (682)
Q Consensus 140 ~~~-l~-----~~~I~l~vi~i~~~~~~~~~~~~~~~ne~~l~~~~~~~~g~--~~~~~~a~ 193 (682)
++. +. +.||.+.+||++.+ ..+...|+.++...+|. ++.+++..
T Consensus 149 ~~~~~~~~~~~~~~i~i~~iGvG~~----------~~~~~~L~~iA~~~~G~~~~~~~~~~~ 200 (509)
T 2odp_A 149 IREILNINQKRNDYLDIYAIGVGKL----------DVDWRELNELGSKKDGERHAFILQDTK 200 (509)
T ss_dssp HHHHTTCCSTTGGGEEEEEEEESSS----------CCCHHHHHHHSCCCTTCCCEEEESSHH
T ss_pred HHHHhhccccccCceEEEEEEcCCC----------cccHHHHHhhccCCCCceeeEEecCHH
Confidence 222 21 78899999999541 12457789999888887 66665553
No 25
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=98.08 E-value=1.4e-05 Score=77.29 Aligned_cols=157 Identities=14% Similarity=0.104 Sum_probs=95.0
Q ss_pred CeEEEEEEeCCCCcCC-ChhHHHHHHHHHHHHhHhcCCccEEEEEEecCCccCccccccCCCcCcEEEEeccCCC-C-HH
Q 005694 5 REALLLLLDVSPSMHS-VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV-D-GH 81 (682)
Q Consensus 5 Kea~vf~iDv~~sM~~-~l~~a~~~~~~~~~~ki~~~~~D~vgvvlfgt~~t~n~l~~e~~~y~nI~v~~~l~~~-~-~~ 81 (682)
+--++|+||.|.||.. .+..++..+..++.+.- ...++||||.|++... +..++... + ..
T Consensus 5 ~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~--~~~~~v~vv~f~~~~~---------------~~~~l~~~~~~~~ 67 (194)
T 1mf7_A 5 DSDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLK--KSKTLFSLMQYSEEFR---------------IHFTFKEFQNNPN 67 (194)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHC--CTTEEEEEEEESSSEE---------------EEECHHHHHHSCC
T ss_pred CeeEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEEecCCce---------------EEEecCCcCCHHH
Confidence 4578999999999986 57778888888887532 6789999999987521 22333211 0 12
Q ss_pred HHHHhhcCCC---CCCCChH--HHHHHH-c----CCCcccceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhcCcEEE
Q 005694 82 LVQSLKHLPQ---GTCAGDY--MLIKKY-G----ETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMK 151 (682)
Q Consensus 82 ~l~~L~~l~~---~~~~gD~--~li~~~-~----~~kk~~krI~L~Td~~~p~~~~~~~~~~~~~~~i~~~l~~~~I~l~ 151 (682)
....|..+.. +|..++. ...+.. . .+....|.|+||||+...-+. ..+...++.+++.||.+.
T Consensus 68 ~~~~i~~l~~~~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~d~-------~~~~~~~~~~~~~gi~v~ 140 (194)
T 1mf7_A 68 PRSLVKPITQLLGRTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKFGDP-------LGYEDVIPEADREGVIRY 140 (194)
T ss_dssp HHHHHTTCCCCCSCBCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEEESSCCBSCS-------SCGGGTHHHHHHTTEEEE
T ss_pred HHHHHHhCcCCCCCchHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCc-------hhhHHHHHHHHHCCCEEE
Confidence 3555666643 2333332 222221 1 111235779999999764111 124455778899999999
Q ss_pred EEeeccCCCCCCCcchhchhhHHHHHHhhhc-CCeeeehhch
Q 005694 152 NIVVRASLSGEPHMRVIIENDNLLNIFSKKS-SAKTLFVDST 192 (682)
Q Consensus 152 vi~i~~~~~~~~~~~~~~~ne~~l~~~~~~~-~g~~~~~~~a 192 (682)
.||++..+ . ...+...|+.++... +|.++...+.
T Consensus 141 ~igvG~~~----~---~~~~~~~L~~iA~~~~~~~~~~~~~~ 175 (194)
T 1mf7_A 141 VIGVGDAF----R---SEKSRQELNTIASKPPRDHVFQVNNF 175 (194)
T ss_dssp EEEESGGG----C---SHHHHHHHHHHSCSSHHHHEEEESSG
T ss_pred EEEecccc----c---ccccHHHHHHHhCCCCcccEEEeCCH
Confidence 99995421 0 012356788887764 3556655444
No 26
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=98.06 E-value=2.8e-05 Score=90.99 Aligned_cols=156 Identities=18% Similarity=0.218 Sum_probs=99.3
Q ss_pred EEEEEEeCCCCcCC-ChhHHHHHHHHHHHHhHhcCCccEEEEEEecCCccCccccccCCCcCcEEEEeccCCC---CH-H
Q 005694 7 ALLLLLDVSPSMHS-VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV---DG-H 81 (682)
Q Consensus 7 a~vf~iDv~~sM~~-~l~~a~~~~~~~~~~ki~~~~~D~vgvvlfgt~~t~n~l~~e~~~y~nI~v~~~l~~~---~~-~ 81 (682)
-+||+||.|.||.. .+..+++.+..++.+.-....+++||||.|+++. .+..++... +. .
T Consensus 245 div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~---------------~~~~~l~~~~~~~~~~ 309 (741)
T 3hrz_D 245 NIYLVLDGSGSIGASDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYP---------------KIWVKVSEADSSNADW 309 (741)
T ss_dssp EEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSE---------------EEEECTTSGGGGCHHH
T ss_pred eEEEEeccCCcccccchHHHHHHHHHHHHhhhccCCCceEEEEEeccCC---------------ceeEeecccCCcCHHH
Confidence 48999999999965 4788888888888876667788999999998742 234455442 33 3
Q ss_pred HHHHhhcCC-----C--CCCCChH--HHHHHHc-----CC---CcccceEEEEeCCCCCCCCCCCCCchhhHHHH-----
Q 005694 82 LVQSLKHLP-----Q--GTCAGDY--MLIKKYG-----ET---YKGKKHLCLITDALCPLKDPDVGTKEDQVSTI----- 139 (682)
Q Consensus 82 ~l~~L~~l~-----~--~~~~gD~--~li~~~~-----~~---kk~~krI~L~Td~~~p~~~~~~~~~~~~~~~i----- 139 (682)
.++.|+++. . +|..++. ...+.+. .. ....|.||||||+...... ....-++.+
T Consensus 310 ~~~~i~~l~~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~g~----~p~~~~~~i~~~~~ 385 (741)
T 3hrz_D 310 VTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGG----DPITVIDEIRDLLY 385 (741)
T ss_dssp HHHHHTTCCGGGGSSSCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCSSS----CTHHHHHHHHHHTT
T ss_pred HHHHHHhcccccccCCCChHHHHHHHHHHHHHhhhhhccccchhccCeEEEEECCCccccCC----CchHHHHHHHHHhh
Confidence 556677775 2 3444443 2333331 11 1235679999999765432 111112222
Q ss_pred ----HHHHhhcCcEEEEEeeccCCCCCCCcchhchhhHHHHHHhhhcCCe--eeehhch
Q 005694 140 ----ARQMVAFGLRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAK--TLFVDST 192 (682)
Q Consensus 140 ----~~~l~~~~I~l~vi~i~~~~~~~~~~~~~~~ne~~l~~~~~~~~g~--~~~~~~a 192 (682)
++.+++.||.+.+||++.+ .++..|+.++...+|. ++.+.+.
T Consensus 386 ~~~~a~~~~~~gi~i~~igvG~~-----------~~~~~L~~ia~~~~g~~~~~~~~~~ 433 (741)
T 3hrz_D 386 IGKDRKNPREDYLDVYVFGVGPL-----------VNQVNINALASKKDNEQHVFKVKDM 433 (741)
T ss_dssp CSSCTTCCCGGGEEEEEEECSSS-----------CCHHHHHHHSCCCTTCCCEECBSSH
T ss_pred cccccccccccCeeEEEEeCCCc-----------CCHHHHHHHhcCCCCcceEEEeCCH
Confidence 2256778999999999531 2346688888877774 6655544
No 27
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=97.93 E-value=6.8e-07 Score=86.25 Aligned_cols=158 Identities=18% Similarity=0.192 Sum_probs=91.8
Q ss_pred CeEEEEEEeCCCCcC-CChhHHHHHHHHHHHHhHhcCCccEEEEEEecCCccCccccccCCCcCcEEEEeccCCCCHHH-
Q 005694 5 REALLLLLDVSPSMH-SVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVVDGHL- 82 (682)
Q Consensus 5 Kea~vf~iDv~~sM~-~~l~~a~~~~~~~~~~ki~~~~~D~vgvvlfgt~~t~n~l~~e~~~y~nI~v~~~l~~~~~~~- 82 (682)
.-.++||||+|.||. ..+..+..++..++.+. ..+.|.||||.|+++... ++.++.. +...
T Consensus 5 ~~~vv~vlD~SgSM~~~~~~~~k~~~~~~~~~~--~~~~~~v~lv~f~~~~~~--------------~~~~~~~-~~~~~ 67 (189)
T 2x31_A 5 DRVLIFAVDASGSAAVARLSEAKGAVELLLGRA--YAARDHVSLITFRGTAAQ--------------VLLQPSR-SLTQT 67 (189)
T ss_dssp CCEEEEEEECCTTSCC--CHHHHHHHHHHHHHS--CTTTSCCCEEEESBSCCC--------------BCTTTCS-CHHHH
T ss_pred CeEEEEEEECCCCCCchHHHHHHHHHHHHHHHh--cCCCcEEEEEEECCCCce--------------EecCCCC-CHHHH
Confidence 457899999999994 56788888888888643 479999999999974321 1123322 4433
Q ss_pred HHHhhcCCCC--CCCChH--HHHHHHcCC--CcccceEEEEeCCCCCCCCCC---CCCchhhHHHHHHHHhhcCcEEEEE
Q 005694 83 VQSLKHLPQG--TCAGDY--MLIKKYGET--YKGKKHLCLITDALCPLKDPD---VGTKEDQVSTIARQMVAFGLRMKNI 153 (682)
Q Consensus 83 l~~L~~l~~~--~~~gD~--~li~~~~~~--kk~~krI~L~Td~~~p~~~~~---~~~~~~~~~~i~~~l~~~~I~l~vi 153 (682)
...|..+..+ |..++. ......... ....+.||||||+........ .....+.+..+++.+++.||.+.+|
T Consensus 68 ~~~i~~l~~~g~T~~~~al~~a~~~l~~~~~~~~~~~ivliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~i 147 (189)
T 2x31_A 68 KRQLQGLPGGGGTPLASGMEMAMVTAKQARSRGMTPTIALLTDGRGNIALDGTANRELAGEQATKVARAIRASGMPAVII 147 (189)
T ss_dssp HHHHHHCCCCBCCCCHHHHHHHHHHHHTCTTTCSSEEEEECCBSCCSSCCTHHHHHGGGTCCCEEEEECTGGGGSCCTHH
T ss_pred HHHHhcCCCCCCCCHHHHHHHHHHHHHhccCCCCceEEEEECCCCCCCCCCccccccchhHHHHHHHHHHHHcCCeEEEE
Confidence 4456667542 333443 222222221 234788999999976543100 0000012333455677888887777
Q ss_pred eeccCCCCCCCcchhchhhHHHHHHhhhcCCeeeehhc
Q 005694 154 VVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTLFVDS 191 (682)
Q Consensus 154 ~i~~~~~~~~~~~~~~~ne~~l~~~~~~~~g~~~~~~~ 191 (682)
+++.. +...|+.++..++|.++.+.+
T Consensus 148 g~g~~------------~~~~L~~iA~~~~G~~~~~~~ 173 (189)
T 2x31_A 148 DTAMR------------PNPALVDLARTMDAHYIALPR 173 (189)
T ss_dssp HHHHS------------SCSSSCSTTTEEEESSTTTHH
T ss_pred ecCCC------------CHHHHHHHHHhcCCeEEECCC
Confidence 77431 234456666666776655543
No 28
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=97.86 E-value=3.2e-05 Score=75.30 Aligned_cols=134 Identities=14% Similarity=0.155 Sum_probs=84.9
Q ss_pred eEEEEEEeCCCCcCC-ChhHHHHHHHHHHHHhHhcCCccEEEEEEecCCccCccccccCCCcCcEEEEeccCC-CCH-HH
Q 005694 6 EALLLLLDVSPSMHS-VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKV-VDG-HL 82 (682)
Q Consensus 6 ea~vf~iDv~~sM~~-~l~~a~~~~~~~~~~ki~~~~~D~vgvvlfgt~~t~n~l~~e~~~y~nI~v~~~l~~-~~~-~~ 82 (682)
--++|+||.|.||.. .+..++..+..++.+.-++.+.++||||.|+++. .+..++.. .+. +.
T Consensus 22 ~DivfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~---------------~~~~~l~~~~~~~~~ 86 (199)
T 3zqk_A 22 LDVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMV---------------TVEYPFSEAQSKGDI 86 (199)
T ss_dssp CEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSE---------------EEEECTTSCCCHHHH
T ss_pred cCEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCcc---------------cEEEecCCcCCHHHH
Confidence 348999999999985 4788888898888877677899999999999852 22334443 233 34
Q ss_pred HHHhhcCCC--C--CCCChH--HHHHH-Hc----CCCcccceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhcCcEEE
Q 005694 83 VQSLKHLPQ--G--TCAGDY--MLIKK-YG----ETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMK 151 (682)
Q Consensus 83 l~~L~~l~~--~--~~~gD~--~li~~-~~----~~kk~~krI~L~Td~~~p~~~~~~~~~~~~~~~i~~~l~~~~I~l~ 151 (682)
++.|+++.. + |..|+. ...+. +. .+....|.||||||+.+. +. .. . + ..||.+.
T Consensus 87 ~~~i~~l~~~gg~~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~-d~----v~--~-------~-~~~v~v~ 151 (199)
T 3zqk_A 87 LQRLREIRYQGGNRTNTGLALRYLSDHSFLVSQGDREQAPNLVYMVTGNPAS-DE----IK--R-------L-PGDIQVV 151 (199)
T ss_dssp HHHHHHCCCCCCSCCCHHHHHHHCCCCCTCGGGTCCTTSCEEEEEEECSCCS-SC----CC--C-------C-CTTEEEE
T ss_pred HHHHHhCcCCCCCcChHHHHHHHHHHHhhCcccCCCCCCCeEEEEEeCCCCc-hH----HH--H-------H-hCCCEEE
Confidence 566777643 2 444432 11111 11 112235779999999653 11 11 1 1 2689999
Q ss_pred EEeeccCCCCCCCcchhchhhHHHHHHhh
Q 005694 152 NIVVRASLSGEPHMRVIIENDNLLNIFSK 180 (682)
Q Consensus 152 vi~i~~~~~~~~~~~~~~~ne~~l~~~~~ 180 (682)
.||++.+ .|...|+.++.
T Consensus 152 ~iGiG~~-----------~~~~~L~~iA~ 169 (199)
T 3zqk_A 152 PIGVGPN-----------ANVQELERIGW 169 (199)
T ss_dssp EEEESTT-----------CCHHHHHHHHT
T ss_pred EEEcCCC-----------CCHHHHHHHhC
Confidence 9999531 23567888876
No 29
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=97.49 E-value=0.00036 Score=66.53 Aligned_cols=148 Identities=18% Similarity=0.167 Sum_probs=84.1
Q ss_pred eEEEEEEeCCCCcCC-ChhHHHHHHHHHHHHhHhcCCccEEEEEEecCCccCccccccCCCcCcEEEEeccCCCC-H-HH
Q 005694 6 EALLLLLDVSPSMHS-VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVVD-G-HL 82 (682)
Q Consensus 6 ea~vf~iDv~~sM~~-~l~~a~~~~~~~~~~ki~~~~~D~vgvvlfgt~~t~n~l~~e~~~y~nI~v~~~l~~~~-~-~~ 82 (682)
--++|+||.|.||.. .+..++..+..++.+ +....++||||.|++.. .+..++.... . +.
T Consensus 3 ~divfvlD~S~Sm~~~~~~~~k~~~~~~~~~--l~~~~~rv~vv~fs~~~---------------~~~~~l~~~~~~~~~ 65 (179)
T 1mjn_A 3 VDLVFLFDGSMSLQPDEFQKILDFMKDVMKK--CSNTSYQFAAVQFSTSY---------------KTEFDFSDYVKRKDP 65 (179)
T ss_dssp EEEEEEEECBTTCCHHHHHHHHHHHHHHHHH--TTTSSEEEEEEEESSSE---------------EEEECHHHHHHHCCH
T ss_pred ccEEEEEeCCCCCCHHHHHHHHHHHHHHHHH--hCCCCeEEEEEEECCce---------------eEEEcCcccCCHHHH
Confidence 358999999999986 477788888888876 35566899999999752 1223332211 0 11
Q ss_pred HHHhhcC---CCCCCCChH--HHHHH-HcC----CCcccceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhcCcEEEE
Q 005694 83 VQSLKHL---PQGTCAGDY--MLIKK-YGE----TYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKN 152 (682)
Q Consensus 83 l~~L~~l---~~~~~~gD~--~li~~-~~~----~kk~~krI~L~Td~~~p~~~~~~~~~~~~~~~i~~~l~~~~I~l~v 152 (682)
...+..+ ..+|..|.. ...+. +.. +....|.|+||||+...-.. . . .+..||.+..
T Consensus 66 ~~~~~~i~~~~g~T~~~~aL~~a~~~~~~~~~g~r~~~~~~iillTDG~~~~~~-----~---~------~~~~~i~i~~ 131 (179)
T 1mjn_A 66 DALLKHVKHMLLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSG-----N---I------DAAKDIIRYI 131 (179)
T ss_dssp HHHHTTCCCCCBCCCHHHHHHHHHHHTSSGGGTCCTTSEEEEEEEESSCCSSCS-----C---C------GGGTTSEEEE
T ss_pred HHHHHhcccCCCCChHHHHHHHHHHHhcccccCCCCCCCeEEEEEcCCCCCCCc-----c---h------HHHCCCEEEE
Confidence 2223333 234544543 22222 221 12245779999999764221 1 0 2567999999
Q ss_pred EeeccCCCCCCCcchhchhhHHHHHHhhhcCCe-eeehhc
Q 005694 153 IVVRASLSGEPHMRVIIENDNLLNIFSKKSSAK-TLFVDS 191 (682)
Q Consensus 153 i~i~~~~~~~~~~~~~~~ne~~l~~~~~~~~g~-~~~~~~ 191 (682)
||++.... . ..+...|+.++...+|. ++..++
T Consensus 132 igvG~~~~----~---~~~~~~L~~iA~~~~~~~~~~~~~ 164 (179)
T 1mjn_A 132 IGIGKHFQ----T---KESQETLHKFASKPASEFVKILDT 164 (179)
T ss_dssp EEESGGGC----S---HHHHHTTGGGSCSCHHHHEEEESS
T ss_pred EEcccccc----c---cccHHHHHHHhCCccHhcEEEeCC
Confidence 99964210 0 11234566666554443 344443
No 30
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=97.41 E-value=0.00017 Score=87.70 Aligned_cols=147 Identities=15% Similarity=0.116 Sum_probs=89.5
Q ss_pred EEEEEEeCCCCcCCC-hhHHHHHHHHHHHHhHhcCCccEEEEEEecCCccCccccccCCCcCcEEEEeccCC-CC-HHHH
Q 005694 7 ALLLLLDVSPSMHSV-LPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKV-VD-GHLV 83 (682)
Q Consensus 7 a~vf~iDv~~sM~~~-l~~a~~~~~~~~~~ki~~~~~D~vgvvlfgt~~t~n~l~~e~~~y~nI~v~~~l~~-~~-~~~l 83 (682)
-++|+||.|.||... +..++..+..++.+- ....++||||.|+++. .+..++.. .+ .+..
T Consensus 132 DIvfvlD~SgSm~~~~f~~~k~fv~~lv~~~--~~~~~rVglV~Fs~~~---------------~~~~~lt~~~~~~~l~ 194 (1095)
T 3k6s_A 132 DIVFLIDGSGSISSRNFATMMNFVRAVISQF--QRPSTQFSLMQFSNKF---------------QTHFTFEEFRRSSNPL 194 (1095)
T ss_dssp EEEEEEECCTTSCSHHHHHHHHHHHHHHHSS--CSSSEEEEEEEESSSE---------------EEEECSHHHHSCSCGG
T ss_pred cEEEEEcCCCCCChhHHHHHHHHHHHHHHhc--cccccEEEEEEECCeE---------------EEEecCcccCCHHHHH
Confidence 489999999999874 788888888888753 3567999999999852 12223321 00 1122
Q ss_pred HHhhcCC---CCCCCChH--HHHHH-Hc----CCCcccceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhcCcEEEEE
Q 005694 84 QSLKHLP---QGTCAGDY--MLIKK-YG----ETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKNI 153 (682)
Q Consensus 84 ~~L~~l~---~~~~~gD~--~li~~-~~----~~kk~~krI~L~Td~~~p~~~~~~~~~~~~~~~i~~~l~~~~I~l~vi 153 (682)
..++.+. .+|..|+. ...+. +. .+....|.||||||+....+ ...+...++.+++.||.+..|
T Consensus 195 ~ai~~i~~~gG~T~~g~AL~~a~~~lf~~~~g~R~~~~kviIllTDG~~~~d-------~~~~~~~a~~~r~~GI~i~aI 267 (1095)
T 3k6s_A 195 SLLASVHQLQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGD-------SLDYKDVIPMADAAGIIRYAI 267 (1095)
T ss_dssp GGTTTCCCCCSCBCHHHHHHHHHTTTTSTTTTCCSSSEEEEEEEESSCCBSC-------SSCHHHHHHHHHHHCEEECCE
T ss_pred HHHhhhhcccCCChHHHHHHHHHHhhccccccCCCCCCeEEEEEeCCCcCCC-------chhHHHHHHHHHHCCCEEEEE
Confidence 3344442 23334443 12221 21 12234678999999987422 135778888999999999999
Q ss_pred eeccCCCCCCCcchhchhhHHHHHHhhhcCC
Q 005694 154 VVRASLSGEPHMRVIIENDNLLNIFSKKSSA 184 (682)
Q Consensus 154 ~i~~~~~~~~~~~~~~~ne~~l~~~~~~~~g 184 (682)
|++..+.. ..+...|+.++...+|
T Consensus 268 GVG~~~~~-------~~d~~eL~~IAs~p~g 291 (1095)
T 3k6s_A 268 GVGLAFQN-------RNSWKELNDIASKPSQ 291 (1095)
T ss_dssp EBSSGGGS-------TTSSHHHHTTSCSSTT
T ss_pred eccccccc-------ccCHHHHHHHHcCCCC
Confidence 99653200 1234556666655443
No 31
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=97.26 E-value=0.0018 Score=72.78 Aligned_cols=154 Identities=13% Similarity=0.044 Sum_probs=80.2
Q ss_pred eEEEEEEeCCCCcCC-Ch-----hHHHHHHHHHHHHhHhcCCccEEEEEEecCCccCccccccCCCcCcEEEEeccCCC-
Q 005694 6 EALLLLLDVSPSMHS-VL-----PDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV- 78 (682)
Q Consensus 6 ea~vf~iDv~~sM~~-~l-----~~a~~~~~~~~~~ki~~~~~D~vgvvlfgt~~t~n~l~~e~~~y~nI~v~~~l~~~- 78 (682)
--++++||+|.||.. .. ..+.+++..+. -+..+.+|.||||+|++.-+. .++..-
T Consensus 363 ~~~lv~vDvSgSM~~~~~~~~~k~~~~e~Aa~la--~~~~r~~d~v~lv~Fs~~~~~----------------~~~~~~~ 424 (535)
T 2nvo_A 363 TRHLLALDVSGSMTCGDVAGVPGLTPNMAAAAMS--LIALRTEPDALTMGFAEQFRP----------------LGITPRD 424 (535)
T ss_dssp SEEEEEECCSGGGGSCCGGGCTTCCHHHHHHHHH--HHHHHHSSEEEEEEEBSSEEE----------------CCCCTTC
T ss_pred ceEEEEEECCccccCCCCCCCCcccHHHHHHHHH--HHHcCcCCceEEEEECCcceE----------------cCCCcch
Confidence 457888999999976 32 12344333322 233568899999999863111 122111
Q ss_pred CH-HHHHHhhcCC-CCCCCChHHHHHHHcCCCcccceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhh---cCcEEEEE
Q 005694 79 DG-HLVQSLKHLP-QGTCAGDYMLIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVA---FGLRMKNI 153 (682)
Q Consensus 79 ~~-~~l~~L~~l~-~~~~~gD~~li~~~~~~kk~~krI~L~Td~~~p~~~~~~~~~~~~~~~i~~~l~~---~~I~l~vi 153 (682)
++ +.++.|.... .+|..+. .+......++...+||||||+.+.... ......++.+++ .++++.++
T Consensus 425 ~l~~~l~~l~~~~~ggTdi~~--~l~~a~~~~~~~~~vIliTD~~~~~g~-------~~~~~al~~~r~~~~~~~klv~i 495 (535)
T 2nvo_A 425 TLESAMQKAQSVSFGGTDCAQ--PILWAAQERLDVDTFVVYTDNETWAGQ-------VHPTVALDQYAQKMGRAPKLIVV 495 (535)
T ss_dssp CHHHHHHHTCCSSBCCCCTTH--HHHHHHHTTCCCSEEEEEESSCCCCCS-------SCHHHHHHHHHHHHSCCCEEEEE
T ss_pred hHHHHHHHHhhCCCCCccHHH--HHHHHHHhcCCCCEEEEEeCCCccCCC-------CCHHHHHHHHHHhhCCCCeEEEE
Confidence 11 3344444332 2333343 333333333446889999999876542 123334444444 47888888
Q ss_pred eeccC----C-CCCC-CcchhchhhHHHHHHhhhcCCee
Q 005694 154 VVRAS----L-SGEP-HMRVIIENDNLLNIFSKKSSAKT 186 (682)
Q Consensus 154 ~i~~~----~-~~~~-~~~~~~~ne~~l~~~~~~~~g~~ 186 (682)
+++.. . +++. ...+..-++..++.+++-++|.+
T Consensus 496 ~l~~~~~~~~~~~~~~~~~i~g~se~~l~~Ia~~~~G~~ 534 (535)
T 2nvo_A 496 GLTATEFSIADPQRRDMLDVVGFDAAAPNVMTAFARGEV 534 (535)
T ss_dssp ETTCSCCCCSCTTCSSEEEEEECCTTHHHHHHHHHTTCC
T ss_pred eccCCCcccCCCCCCCceeeeCCCHHHHHHHHHHhCCCc
Confidence 88541 0 0000 00111234566776666666643
No 32
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=97.04 E-value=0.0053 Score=69.02 Aligned_cols=124 Identities=17% Similarity=0.186 Sum_probs=65.4
Q ss_pred eEEEEEEeCCCCcCCC-----hhHHHHHHHHHHHHhHhcCCccEEEEEEecCCccCccccccCCCcCcEEEEeccCC-CC
Q 005694 6 EALLLLLDVSPSMHSV-----LPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKV-VD 79 (682)
Q Consensus 6 ea~vf~iDv~~sM~~~-----l~~a~~~~~~~~~~ki~~~~~D~vgvvlfgt~~t~n~l~~e~~~y~nI~v~~~l~~-~~ 79 (682)
--++|+||+|.||... +.. .+++..+. -+..++.|.||||.|++.-.. .++.. .+
T Consensus 369 ~~v~lvvD~SgSM~~~~~~~~l~~-~~~Aa~l~--~~~~~~~d~vglv~Fs~~~~~----------------~~~t~~~~ 429 (538)
T 1yvr_A 369 KRFLLAIDVSASMNQRVLGSILNA-SVVAAAMC--MLVARTEKDSHMVAFSDEMLP----------------CPITVNML 429 (538)
T ss_dssp CCEEEEEECSGGGGSBSTTSSCBH-HHHHHHHH--HHHHHHCSSEEEEEESSSEEC----------------CSCCTTSC
T ss_pred ceEEEEEECccccCCCCCCCcHHH-HHHHHHHH--HHHhccCCceEEEEECCCceE----------------cCCCCccc
Confidence 3688999999999742 333 33321111 122467899999999862111 12221 11
Q ss_pred -HHHHHHhhcCCC-CCCCChHHHHHHHcCCCcccceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHh---hcCcEEEEEe
Q 005694 80 -GHLVQSLKHLPQ-GTCAGDYMLIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMV---AFGLRMKNIV 154 (682)
Q Consensus 80 -~~~l~~L~~l~~-~~~~gD~~li~~~~~~kk~~krI~L~Td~~~p~~~~~~~~~~~~~~~i~~~l~---~~~I~l~vi~ 154 (682)
...++.|..+.. +|..++. +......+...+.||||||+....+. ......++.+. ..+|.+.+|+
T Consensus 430 l~~~l~~l~~~~~GgT~i~~a--L~~a~~~~~~~~~iIliTDg~~~~g~-------~~~~~~l~~~~~~~~~~v~l~~ig 500 (538)
T 1yvr_A 430 LHEVVEKMSDITMGSTDCALP--MLWAQKTNTAADIFIVFTDCETNVED-------VHPATALKQYREKMGIPAKLIVCA 500 (538)
T ss_dssp HHHHHHHHTTCCCSCCCTTHH--HHHHHHTTCCCSEEEEEECCCCCSSS-------CCHHHHHHHHHHHHTCCCEEEEEE
T ss_pred HHHHHHHHhcCCCCCCcHHHH--HHHHHhccCCCCEEEEEcCCCCCCCC-------CCHHHHHHHHHHHhCCCcEEEEEE
Confidence 223555655432 4555543 11111112335789999999765431 11233333333 2346667788
Q ss_pred ecc
Q 005694 155 VRA 157 (682)
Q Consensus 155 i~~ 157 (682)
++.
T Consensus 501 ig~ 503 (538)
T 1yvr_A 501 MTS 503 (538)
T ss_dssp CSS
T ss_pred ecC
Confidence 754
No 33
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=95.70 E-value=0.015 Score=57.84 Aligned_cols=50 Identities=26% Similarity=0.286 Sum_probs=43.0
Q ss_pred CeEEEEEEeCCCCcCCChhHHHHHHHHHHHHhHhcCCccEEEEEEecCCc
Q 005694 5 REALLLLLDVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEE 54 (682)
Q Consensus 5 Kea~vf~iDv~~sM~~~l~~a~~~~~~~~~~ki~~~~~D~vgvvlfgt~~ 54 (682)
+--+||+||.|.||...+..+...+..++...-..+..++||||.|+.+.
T Consensus 134 ~~~vvfLVDtSgSM~~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~ 183 (242)
T 3rag_A 134 ALHLVVCLDTSASMRDKIPTVREAVRDLALSLKVRSGPLAVSVIAFPGKG 183 (242)
T ss_dssp CEEEEEEEECSGGGTTTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESCST
T ss_pred CCCEEEEEECcccHHHHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCC
Confidence 34689999999999999999999999888865556789999999999753
No 34
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=95.58 E-value=0.055 Score=64.02 Aligned_cols=47 Identities=21% Similarity=0.364 Sum_probs=36.2
Q ss_pred EEEEEEeCCCCcCCC-------hhHHHHHHHHHHHHhHhcCCccEEEEEEecCCc
Q 005694 7 ALLLLLDVSPSMHSV-------LPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEE 54 (682)
Q Consensus 7 a~vf~iDv~~sM~~~-------l~~a~~~~~~~~~~ki~~~~~D~vgvvlfgt~~ 54 (682)
-+||+||+|.||... +..+..++..++ ..+..++.|+||||.|+++.
T Consensus 226 DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~l-d~L~~~~~drVgLV~Fs~~a 279 (893)
T 2ww8_A 226 DVVILLDNSNSMSNIRNKNARRAERAGEATRSLI-DKITSDSENRVALVTYASTI 279 (893)
T ss_dssp EEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHH-HHHHTSTTCEEEEEEESSSB
T ss_pred cEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHH-HHhhcCCCcEEEEEEecCcc
Confidence 589999999999764 344566777777 34445789999999999864
No 35
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=94.17 E-value=0.2 Score=48.85 Aligned_cols=100 Identities=20% Similarity=0.313 Sum_probs=61.0
Q ss_pred EEEEEEeCCCCcCCChhHHHHHHHHHHHHhHhcCCccEEEEEEecCCccCccccccCCCcCcEEEEeccCCCCHHHHHHh
Q 005694 7 ALLLLLDVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVVDGHLVQSL 86 (682)
Q Consensus 7 a~vf~iDv~~sM~~~l~~a~~~~~~~~~~ki~~~~~D~vgvvlfgt~~t~n~l~~e~~~y~nI~v~~~l~~~~~~~l~~L 86 (682)
-++||+|+|.||...++.+.+.+..++++---..++-++|++.|.-. +|.|+ .++..-.....+.+
T Consensus 5 Dl~fl~D~S~SM~~di~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk-----------~~~~~---l~lT~d~~~F~~~v 70 (212)
T 2iue_A 5 DLYFLMGLSGSAQGHLSNVQTLGSDLLKALNEISRSGRIGFGSIVNM-----------TFQHI---LKLTADSSQFQREL 70 (212)
T ss_dssp EEEEEEECCGGGTTTHHHHHHHHHHHHHHHHHHCSCEEEEEEEESSS-----------CEEEE---EEEESCHHHHHHHH
T ss_pred EEEEEEeCCCcchhHHHHHHHHHHHHHHHHHhhCcCceEEEEEEEcC-----------cceec---CCcCCCHHHHHHHH
Confidence 47999999999999998888887777754322356889999999643 46554 34433233456667
Q ss_pred hcCC-CCC---CCChH-HHH------HHHcCCCcccceEEEEeCCC
Q 005694 87 KHLP-QGT---CAGDY-MLI------KKYGETYKGKKHLCLITDAL 121 (682)
Q Consensus 87 ~~l~-~~~---~~gD~-~li------~~~~~~kk~~krI~L~Td~~ 121 (682)
..+. +|. .+|-+ .+. .+.+=++ ..|-|+|+||+.
T Consensus 71 ~~~~vsg~~D~PE~g~dal~qa~~c~~~i~Wr~-a~rllvl~TDa~ 115 (212)
T 2iue_A 71 RKQLVSGKLATPKGQLDAVVQVAICLGEIGWRN-GTRFLVLVTDND 115 (212)
T ss_dssp HTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEEEECSSC
T ss_pred hhccccCCCCCCchHHHHHHHHHHhhhhcccCC-ccEEEEEECcCC
Confidence 6642 221 12222 121 1222223 556677788874
No 36
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=92.55 E-value=0.59 Score=53.62 Aligned_cols=145 Identities=18% Similarity=0.200 Sum_probs=79.5
Q ss_pred EEEEEEeCCCCcCCChhHHHHHHHHHHHHhHhcCCccEEEEEEecCCcc------------CccccccC------CCcCc
Q 005694 7 ALLLLLDVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEET------------ENELTKEV------GGYEH 68 (682)
Q Consensus 7 a~vf~iDv~~sM~~~l~~a~~~~~~~~~~ki~~~~~D~vgvvlfgt~~t------------~n~l~~e~------~~y~n 68 (682)
-++||||++.||...++.+.+....|+++---..++=++|++.|.-... .|+-.... =+|+|
T Consensus 113 Dly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~~~r~Gfgsf~Dk~~~P~~~~~p~~~~~~pc~~~~~~c~~~f~f~~ 192 (690)
T 3fcs_B 113 DIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLPMFGYKH 192 (690)
T ss_dssp EEEEEEECSGGGHHHHHHTTTTTHHHHHHHHHHCSCEEEEEEEECCCSSTTTSCCCSTTTTTCTTSSSSSCCCCCCSEEE
T ss_pred cEEEEecCCcchHHHHHHHHHHHHHHHHHHHhhCcCceEEeEEeeccccCCccccChhhhccCCCcCCCCCCCCCcccee
Confidence 3789999999999888777665555554322245788999999976332 22211000 14555
Q ss_pred EEEEeccCCCCHHHHHHhhcCC-CCC---CCChH-HHHH------HHcCCCcccceEEEEeCCCCCCCCCC---------
Q 005694 69 VKVLQDIKVVDGHLVQSLKHLP-QGT---CAGDY-MLIK------KYGETYKGKKHLCLITDALCPLKDPD--------- 128 (682)
Q Consensus 69 I~v~~~l~~~~~~~l~~L~~l~-~~~---~~gD~-~li~------~~~~~kk~~krI~L~Td~~~p~~~~~--------- 128 (682)
+. +|..-.....+.|..+. +|. -+|-+ .|++ +.+=+....|-|||+||+..-+.++.
T Consensus 193 ~l---~lt~~~~~f~~~v~~~~isgn~D~PE~g~dAl~qa~~c~~~igWr~~a~rllv~~TDa~~H~agDg~l~gi~~pn 269 (690)
T 3fcs_B 193 VL---TLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIALDGRLAGIVQPN 269 (690)
T ss_dssp EE---EEESCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEESSCBCCTTGGGGGTCCSCC
T ss_pred ec---ccCCCHHHHHHHhhceeccCCCCCCchHHHHHHHHhhcccccCCCCCceEEEEEECCCccccCCCccccceecCC
Confidence 53 44433334466676643 222 23333 2222 22212234566778888864221100
Q ss_pred C---------------CCchhhHHHHHHHHhhcCcEEEEEe
Q 005694 129 V---------------GTKEDQVSTIARQMVAFGLRMKNIV 154 (682)
Q Consensus 129 ~---------------~~~~~~~~~i~~~l~~~~I~l~vi~ 154 (682)
+ ..++-.+..+++.|.+.+|.+.+..
T Consensus 270 d~~chl~~~~~y~~s~~~DypSi~ql~~~l~~~~i~~ifav 310 (690)
T 3fcs_B 270 DGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAV 310 (690)
T ss_dssp CCCCCBCTTCBBGGGGTSCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred CcceeecCCCccccccccCCCCHHHHHHHHHHcCCeEEEEE
Confidence 0 0011137889999999999654433
No 37
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=92.32 E-value=0.3 Score=48.41 Aligned_cols=66 Identities=14% Similarity=0.138 Sum_probs=47.9
Q ss_pred ccceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhcCcEEEEEeeccCCCCCCCcchhchhhHHHHHHhhhcCCeeeeh
Q 005694 110 GKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTLFV 189 (682)
Q Consensus 110 ~~krI~L~Td~~~p~~~~~~~~~~~~~~~i~~~l~~~~I~l~vi~i~~~~~~~~~~~~~~~ne~~l~~~~~~~~g~~~~~ 189 (682)
..|.||||||+.+.+.. +....++.+++.||.+.+||++.. +. . ....+..|+.++..++|.++..
T Consensus 9 ~~k~iillTDG~~~~g~--------~p~~aa~~a~~~gi~v~tIGig~~--~~--~--~~~~~~~L~~IA~~tGG~yf~a 74 (242)
T 3rag_A 9 TIRQILVITDGCSNIGP--------DPVEAARRAHRHGIVVNVIGIVGR--GD--A--GEQGYQEAHSIADAGGGMCRIV 74 (242)
T ss_dssp CEEEEEEEESSCCCSSS--------CHHHHHHHHHHTTCEEEEEEECCS--SS--C--TTCCCHHHHHHHHHTTSCEEEE
T ss_pred CccEEEEEccCCCCCCC--------CHHHHHHHHHHCCCEEEEEEecCC--cc--c--cchhHHHHHHHHHhcCCeEEEe
Confidence 37899999999886542 355677888999999999999431 10 0 0123467999999999987653
No 38
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=89.61 E-value=2.6 Score=49.35 Aligned_cols=82 Identities=6% Similarity=0.033 Sum_probs=49.7
Q ss_pred HHHHHHHHhhcCcEEEEEeeccCCCCCCCcchhchhhHHHHHHhhhcCCeeeehh--------chHHhhcccccccCCcc
Q 005694 136 VSTIARQMVAFGLRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTLFVD--------STTSLRGARKTRDISPV 207 (682)
Q Consensus 136 ~~~i~~~l~~~~I~l~vi~i~~~~~~~~~~~~~~~ne~~l~~~~~~~~g~~~~~~--------~a~~ll~~~~~k~~~~~ 207 (682)
.+.++.++...||.+++|....++ . +-..+..++..++|.++-.. +...+...+..--.+.
T Consensus 367 Y~~la~~~~~~gi~VDlF~~s~~~-----~-----dla~l~~l~~~TGG~v~~y~~F~~~~~~d~~~f~~dl~~~l~~~- 435 (810)
T 1pcx_A 367 YKNFTIDCSKVQITVDLFLASEDY-----M-----DVASLSNLSRFTAGQTHFYPGFSGKNPNDIVKFSTEFAKHISMD- 435 (810)
T ss_dssp HHHHHHHHHHTTEEEEEEEEESSC-----C-----CHHHHHHHHHTTTCCEEEEETCCTTSHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHCCeEEEEEEccCCc-----c-----ChHHHHHHHhcCCcEEEEcCCCcchhhHHHHHHHHHHHHHhhhh-
Confidence 578899999999999999884321 1 12446778888899865322 2222211221111122
Q ss_pred eeeeeeEeecCCeEEEEEEEe
Q 005694 208 TIFRGDLELSEKMKIKVWVYK 228 (682)
Q Consensus 208 ~~~~g~L~lg~~l~I~V~~Y~ 228 (682)
..|.+.|++...-.|.|..|.
T Consensus 436 ~gf~a~mrVR~S~gl~v~~~~ 456 (810)
T 1pcx_A 436 FCMETVMRARGSTGLRMSRFY 456 (810)
T ss_dssp CCEEEEEEEEECTTEEEEEEE
T ss_pred cceeEEEEEEcCCCeEEEEee
Confidence 478888888755556666664
No 39
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=88.57 E-value=4.6 Score=43.56 Aligned_cols=46 Identities=26% Similarity=0.334 Sum_probs=36.8
Q ss_pred EEEEEeCCCCcCCChhHHHHHHHHHHHHhHhcCCccEEEEEEecCC
Q 005694 8 LLLLLDVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTE 53 (682)
Q Consensus 8 ~vf~iDv~~sM~~~l~~a~~~~~~~~~~ki~~~~~D~vgvvlfgt~ 53 (682)
++||+|+|.||...++.+......|++.---..++=++|+..|.-.
T Consensus 125 LyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~riGfGsFvDK 170 (454)
T 3vi3_B 125 LYYLMDLSYSMKDDLENVKSLGTDLMNEMRRITSDFRIGFGSFVEK 170 (454)
T ss_dssp EEEEEECSGGGHHHHHHHTTHHHHHHHHHTTTCSSEEEEEEEECCC
T ss_pred EEEEecCCcchhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEecc
Confidence 6899999999999888887777777754333468899999999853
No 40
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=87.92 E-value=0.97 Score=51.76 Aligned_cols=143 Identities=17% Similarity=0.178 Sum_probs=79.0
Q ss_pred EEEEEEeCCCCcCCChhHHHHHHHHHHHHhHhcCCccEEEEEEecCCcc-----------Ccccccc------CCCcCcE
Q 005694 7 ALLLLLDVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEET-----------ENELTKE------VGGYEHV 69 (682)
Q Consensus 7 a~vf~iDv~~sM~~~l~~a~~~~~~~~~~ki~~~~~D~vgvvlfgt~~t-----------~n~l~~e------~~~y~nI 69 (682)
-++||||+|.||...++.+.+....|++.---..++=++|+..|.-... .|+-... .=+|+|+
T Consensus 106 Dly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~~~~Pc~~~~~~c~~~f~f~~~ 185 (687)
T 3k6s_B 106 DLYYLMDLSYSMLDDLRNVKKLGGDLLRALNEITESGRIGFGSFVDKTVLPFVNTHPDKLRNPCPNKEKECQPPFAFRHV 185 (687)
T ss_dssp EEEEEEECSSTTHHHHHTTTTCCTTHHHHHHSSCCSCEEEEEEECCCSSTTSSCCSSTTTTCCCCSCCCCCCCCCSCEEE
T ss_pred eEEEEEcCCcchHHHHHHHHHHHHHHHHHHHhhCcCcEEeeEEeeccccCCccccCchhccCCCCCCCCCcCCcccceee
Confidence 3789999999999888777655555554322246789999999985321 1221000 0146666
Q ss_pred EEEeccCCCCHHHHHHhhcCC-CCC---CCChH-HHHH------HHcCCCcccceEEEEeCCCCCCCCCC---------C
Q 005694 70 KVLQDIKVVDGHLVQSLKHLP-QGT---CAGDY-MLIK------KYGETYKGKKHLCLITDALCPLKDPD---------V 129 (682)
Q Consensus 70 ~v~~~l~~~~~~~l~~L~~l~-~~~---~~gD~-~li~------~~~~~kk~~krI~L~Td~~~p~~~~~---------~ 129 (682)
. +|..-.....+.+..+. ++. -+|-+ .|++ +.+=+ ...|-|||+||+..-+.++. +
T Consensus 186 l---~lt~~~~~F~~~v~~~~isgn~D~PE~g~dAl~qa~vc~~~igWr-~a~rllV~~TDa~~H~agDg~l~gi~~pnd 261 (687)
T 3k6s_B 186 L---KLTNNSNQFQTEVGKQLISGNLDAPEGGLDAMMQVAACPEEIGWR-NVTRLLVFATDDGFHFAGDGKLGAILTPND 261 (687)
T ss_dssp E---EEESCSHHHHHHHHTSCCCCCSSSSCCHHHHHHHHTTCHHHHCCC-SSCCEEEEECSSCCCCTTGGGGGTCCCCCC
T ss_pred c---ccCCCHHHHHHHHhhccccCCCCCCchHHHHHHHHhhcccccCCc-cceEEEEEECCCccccCCCccccceecCCC
Confidence 3 44443445566777653 322 23333 2222 22223 35666778888864221100 0
Q ss_pred ------------C--CchhhHHHHHHHHhhcCcEEEEE
Q 005694 130 ------------G--TKEDQVSTIARQMVAFGLRMKNI 153 (682)
Q Consensus 130 ------------~--~~~~~~~~i~~~l~~~~I~l~vi 153 (682)
. .++-.+..+++.|.+.+|.+.+.
T Consensus 262 g~Chl~~~~y~~s~~~DyPS~~ql~~~l~~~~I~~ifa 299 (687)
T 3k6s_B 262 GRCHLEDNLYKRSNEFDYPSVGQLAHKLAENNIQPIFA 299 (687)
T ss_dssp SCCCCSSSBCSSGGGSCCCCGGGHHHHHHHTTCBCCEE
T ss_pred CccccCCCccccccccCCCCHHHHHHHHHHcCCeEEEE
Confidence 0 01112677889999999965433
No 41
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=85.74 E-value=34 Score=39.62 Aligned_cols=82 Identities=12% Similarity=0.115 Sum_probs=49.0
Q ss_pred HHHHHHHHhhcCcEEEEEeeccCCCCCCCcchhchhhHHHHHHhhhcCCeeeehh---ch---HHhhcccccccCCc--c
Q 005694 136 VSTIARQMVAFGLRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTLFVD---ST---TSLRGARKTRDISP--V 207 (682)
Q Consensus 136 ~~~i~~~l~~~~I~l~vi~i~~~~~~~~~~~~~~~ne~~l~~~~~~~~g~~~~~~---~a---~~ll~~~~~k~~~~--~ 207 (682)
.+.++..+.+.||.+++|..+.+. . +-.-+..++..++|.++... .. .++...+. |.... .
T Consensus 335 Y~~la~~~~~~gi~VDlF~~~~~~-----v-----dla~l~~l~~~TGG~~~~~~~F~~~~~~~~l~~~~~-~~~~~~l~ 403 (769)
T 2nut_A 335 FEALANRAATTGHVIDIYACALDQ-----T-----GLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFT-KDMHGQFK 403 (769)
T ss_dssp HHHHHHHHHHHTCEEEEEEECSSC-----C-----CHHHHTHHHHHSSCCEEEESCSSSHHHHHHHHHTTC-BCTTSCBS
T ss_pred HHHHHHHHHHCCeEEEEEeccCCc-----c-----ChHHHHHHhhcCCceEEEcCCCchhhHHHHHHHHHh-hhcccccc
Confidence 467899999999999999884311 1 12446778888999865332 21 12222222 22211 2
Q ss_pred eeeeeeEeecCCeEEEEEEEe
Q 005694 208 TIFRGDLELSEKMKIKVWVYK 228 (682)
Q Consensus 208 ~~~~g~L~lg~~l~I~V~~Y~ 228 (682)
..|.+.|++...=.|.|.+|.
T Consensus 404 ~gf~a~mrVr~S~gl~v~~~~ 424 (769)
T 2nut_A 404 MGFGGTLEIKTSREIKISGAI 424 (769)
T ss_dssp CEEEEEEEEEECTTEEEEEEE
T ss_pred eEEEEEEEEEecCCeEEEeee
Confidence 478888888754445555554
No 42
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=84.86 E-value=5.7 Score=47.05 Aligned_cols=82 Identities=6% Similarity=0.038 Sum_probs=49.7
Q ss_pred HHHHHHHHhhcCcEEEEEeeccCCCCCCCcchhchhhHHHHHHhhhcCCeeeeh---h-----chHHhhcccccccCCcc
Q 005694 136 VSTIARQMVAFGLRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTLFV---D-----STTSLRGARKTRDISPV 207 (682)
Q Consensus 136 ~~~i~~~l~~~~I~l~vi~i~~~~~~~~~~~~~~~ne~~l~~~~~~~~g~~~~~---~-----~a~~ll~~~~~k~~~~~ 207 (682)
.+.++.++...||.+++|....++ . +-..+..++..++|.++-. . +...+...+..--.+.
T Consensus 483 Yk~LA~~~~~~gisVDlF~~s~~~-----v-----dla~l~~l~~~TGG~v~~y~~F~~~~~~d~~kf~~dl~~~Lt~~- 551 (926)
T 1m2v_B 483 YKNFTIDCSKVQITVDLFLASEDY-----M-----DVASLSNLSRFTAGQTHFYPGFSGKNPNDIVKFSTEFAKHISMD- 551 (926)
T ss_dssp HHHHHHHHHHHTEEEEEEEEESSC-----C-----CHHHHHHHHHTTTCCEEEEESCCTTSHHHHHHHHHHHHHHHHSC-
T ss_pred HHHHHHHHHHcCeEEEEEEccCCC-----c-----ChHHHHHHHhcCCceEEEcCCCcchhhhHHHHHHHHHHHHhhhh-
Confidence 578899999999999999884321 1 1244677888889986532 2 2222222222111122
Q ss_pred eeeeeeEeecCCeEEEEEEEe
Q 005694 208 TIFRGDLELSEKMKIKVWVYK 228 (682)
Q Consensus 208 ~~~~g~L~lg~~l~I~V~~Y~ 228 (682)
..|.+.|++...-.|.|..|.
T Consensus 552 ~gf~a~mrVR~S~glkv~~~~ 572 (926)
T 1m2v_B 552 FCMETVMRARGSTGLRMSRFY 572 (926)
T ss_dssp CEEEEEEEEEECTTEEEEEEE
T ss_pred hceeEEEEEEeCCCcEEEEee
Confidence 478898888755556666664
No 43
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=82.44 E-value=3 Score=45.21 Aligned_cols=47 Identities=23% Similarity=0.287 Sum_probs=36.5
Q ss_pred EEEEEEeCCCCcCCChhHHHHHHHHHHHHhHhcCCccEEEEEEecCC
Q 005694 7 ALLLLLDVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTE 53 (682)
Q Consensus 7 a~vf~iDv~~sM~~~l~~a~~~~~~~~~~ki~~~~~D~vgvvlfgt~ 53 (682)
-++||+|+|.||...++.+......|++.---..++=++|+..|.-.
T Consensus 113 DLy~LmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~riGfgsFvDk 159 (472)
T 3t3p_B 113 DIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDK 159 (472)
T ss_dssp EEEEEEECSGGGHHHHHHTTTHHHHHHHHHTTTCSCEEEEEEEECCC
T ss_pred eEEEEEccCcchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeecc
Confidence 37899999999999888777777666654332457899999999754
No 44
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=82.39 E-value=3.6 Score=44.92 Aligned_cols=47 Identities=26% Similarity=0.270 Sum_probs=37.0
Q ss_pred EEEEEEeCCCCcCCChhHHHHHHHHHHHHhHhcCCccEEEEEEecCC
Q 005694 7 ALLLLLDVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTE 53 (682)
Q Consensus 7 a~vf~iDv~~sM~~~l~~a~~~~~~~~~~ki~~~~~D~vgvvlfgt~ 53 (682)
-++||+|+|.||...++.+......|++.---..++=++|+..|.-.
T Consensus 134 DLyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~RiGfGsFvDK 180 (503)
T 3v4v_B 134 DLYYLMDLSYSMKDDLERVRQLGHALLVRLQEVTHSVRIGFGSFVDK 180 (503)
T ss_dssp EEEEEEECSGGGHHHHHHHHHSSHHHHHHHTTTCSCEEEEEEEECCC
T ss_pred eEEEEEecCcchhhHHHHHHHHHHHHHHHHHhhCcCcEEeeeeeccc
Confidence 37899999999999888887777766654333468899999999753
No 45
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=79.63 E-value=28 Score=40.37 Aligned_cols=83 Identities=7% Similarity=0.071 Sum_probs=50.1
Q ss_pred hHHHHHHHHhhcCcEEEEEeeccCCCCCCCcchhchhhHHHHHHhhhcCCeeeehhc------hHHhhcccccccCCcce
Q 005694 135 QVSTIARQMVAFGLRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTLFVDS------TTSLRGARKTRDISPVT 208 (682)
Q Consensus 135 ~~~~i~~~l~~~~I~l~vi~i~~~~~~~~~~~~~~~ne~~l~~~~~~~~g~~~~~~~------a~~ll~~~~~k~~~~~~ 208 (682)
-.+.++.++...||.+++|....++ .+ -.-+..++..++|.++-... ...+...++.--.+. .
T Consensus 355 fY~~lA~~~~~~~i~VDlF~~s~~~-----vd-----latl~~l~~~TGG~v~~y~~F~~~~~~~~f~~dl~~~l~~~-~ 423 (770)
T 3efo_B 355 VYDSLAKDCVAHGCSVTLFLFPSQY-----VD-----VASLGLVPQLTGGTLYKYNNFQMHLDRQQFLNDLRNDIEKK-I 423 (770)
T ss_dssp HHHHHHHHHHHTTEEEEEEECCSSC-----CC-----HHHHTHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHHHHSC-E
T ss_pred HHHHHHHHHHHcCeEEEEEEecCCc-----cC-----hHHHHHHHhhcCceEEEecCCcchhHHHHHHHHHHHhhhhc-e
Confidence 3678999999999999999873311 11 23456677888888654332 122222222211222 4
Q ss_pred eeeeeEeecCCeEEEEEEEe
Q 005694 209 IFRGDLELSEKMKIKVWVYK 228 (682)
Q Consensus 209 ~~~g~L~lg~~l~I~V~~Y~ 228 (682)
.|.+.|++...=.|.|..|.
T Consensus 424 gf~a~mrVR~S~gl~v~~~~ 443 (770)
T 3efo_B 424 GFDAIMRVRTSTGFRATDFF 443 (770)
T ss_dssp EEEEEEEEEECTTEEEEEEE
T ss_pred eeeEEEEEEecCCeEEEEeE
Confidence 78888888754455566654
No 46
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=78.78 E-value=89 Score=36.10 Aligned_cols=83 Identities=12% Similarity=0.104 Sum_probs=48.0
Q ss_pred HHHHHHHHhhcCcEEEEEeeccCCCCCCCcchhchhhHHHHHHhhhcCCeeee---hhch--HHhhcccccccCC--cce
Q 005694 136 VSTIARQMVAFGLRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTLF---VDST--TSLRGARKTRDIS--PVT 208 (682)
Q Consensus 136 ~~~i~~~l~~~~I~l~vi~i~~~~~~~~~~~~~~~ne~~l~~~~~~~~g~~~~---~~~a--~~ll~~~~~k~~~--~~~ 208 (682)
.+.++..+...||.+++|....++ . +-.-+..++..++|.++- +... .+.+...-.|... ...
T Consensus 329 Y~~la~~~~~~gi~VDlF~~~~~~-----~-----dla~l~~l~~~TGG~v~~y~~f~~~~~~~~l~r~l~~~~~~~~~~ 398 (768)
T 1m2o_A 329 YNQIAQRVAANGHTVDIFAGCYDQ-----I-----GMSEMKQLTDSTGGVLLLTDAFSTAIFKQSYLRLFAKDEEGYLKM 398 (768)
T ss_dssp HHHHHHHHHHHTCEEEEEEECSSC-----C-----SHHHHHHHHHHHTCCEEEESCTTSHHHHHHHHHTTCBCTTSSBSC
T ss_pred HHHHHHHHHHCCeEEEEEEccCCc-----c-----ChHHHhhHhhcCCceEEEcCCCchHHHHHHHHHHHhhccccccce
Confidence 367888899999999999884311 1 124467788888998653 3221 1112211122111 024
Q ss_pred eeeeeEeecCCeEEEEEEEe
Q 005694 209 IFRGDLELSEKMKIKVWVYK 228 (682)
Q Consensus 209 ~~~g~L~lg~~l~I~V~~Y~ 228 (682)
.|.+.|++...=.|.|.+|.
T Consensus 399 gf~a~mrVr~S~gl~v~~~~ 418 (768)
T 1m2o_A 399 AFNGNMAVKTSKDLKVQGLI 418 (768)
T ss_dssp EEEEEEEEEECTTEEEEEEE
T ss_pred EEEEEEEEEecCCceEEEee
Confidence 78888888754455565554
No 47
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=73.63 E-value=70 Score=36.87 Aligned_cols=83 Identities=11% Similarity=0.033 Sum_probs=47.7
Q ss_pred hHHHHHHHHhhcCcEEEEEeeccCCCCCCCcchhchhhHHHHHHhhhcCCeeeehhch---------HHhhcccccccCC
Q 005694 135 QVSTIARQMVAFGLRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTLFVDST---------TSLRGARKTRDIS 205 (682)
Q Consensus 135 ~~~~i~~~l~~~~I~l~vi~i~~~~~~~~~~~~~~~ne~~l~~~~~~~~g~~~~~~~a---------~~ll~~~~~k~~~ 205 (682)
-.+.++.++...||.+++|....++ .+ -..+..++..++|.++-.... ..+...++.--.+
T Consensus 330 fY~~la~~~~~~~i~VDlF~~s~~~-----~d-----latl~~l~~~TGG~v~~y~~F~~~~~~~~~~~f~~dl~r~l~~ 399 (751)
T 3eh1_A 330 FYKKLALDCSGQQTAVDLFLLSSQY-----SD-----LASLACMSKYSAGCIYYYPSFHYTHNPSQAEKLQKDLKRYLTR 399 (751)
T ss_dssp HHHHHHHHHHHTTEEEEEEECCSSC-----CC-----HHHHTHHHHTTTCCEEECTTCBTTTBHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCceEEEEEccCcc-----cC-----hHhHHHHHhhcCceEEEeCCcccccchhHHHHHHHHHHHHHhh
Confidence 3688999999999999999873321 11 234566777888876533211 1111111111112
Q ss_pred cceeeeeeEeecCCeEEEEEEEe
Q 005694 206 PVTIFRGDLELSEKMKIKVWVYK 228 (682)
Q Consensus 206 ~~~~~~g~L~lg~~l~I~V~~Y~ 228 (682)
...|.+.|++...=.|.|.+|.
T Consensus 400 -~~gf~a~mrVR~S~glkv~~~~ 421 (751)
T 3eh1_A 400 -KIGFEAVMRIRCTKGLSMHTFH 421 (751)
T ss_dssp -CCEEEEEEEEEECTTEEEEEEE
T ss_pred -hhccceEEEEEecCCeEEEEee
Confidence 2478888888644445555553
No 48
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=71.01 E-value=52 Score=38.10 Aligned_cols=84 Identities=11% Similarity=0.082 Sum_probs=50.2
Q ss_pred hHHHHHHHHhhcCcEEEEEeeccCCCCCCCcchhchhhHHHHHHhhhcCCeeeehhch------HHhhcccccccCCcce
Q 005694 135 QVSTIARQMVAFGLRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTLFVDST------TSLRGARKTRDISPVT 208 (682)
Q Consensus 135 ~~~~i~~~l~~~~I~l~vi~i~~~~~~~~~~~~~~~ne~~l~~~~~~~~g~~~~~~~a------~~ll~~~~~k~~~~~~ 208 (682)
-.+.++.++...||.+++|....++ . +-.-+..++..++|.++-.... ..+...++.--.+. .
T Consensus 351 fY~~la~~~~~~~i~VDlF~~s~~~-----v-----dlatl~~l~~~TGG~v~~y~~F~~~~d~~~f~~dl~~~l~~~-~ 419 (766)
T 3eh2_A 351 AYQTLAKECVAQGCCVDLFLFPNQY-----V-----DVATLSVVPQLTGGSVYKYASFQVENDQERFLSDLRRDVQKV-V 419 (766)
T ss_dssp HHHHHHHHHHHHTEEEEEEECCSSC-----C-----CHHHHTHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHHHHSC-E
T ss_pred HHHHHHHHHHhCCeEEEEEEecCCC-----c-----ChHHHHHHHhhcCceEEEeCCCcchhHHHHHHHHHHHHhhhc-c
Confidence 4688999999999999999873211 1 1234566778888886533221 11222222211233 4
Q ss_pred eeeeeEeecCCeEEEEEEEee
Q 005694 209 IFRGDLELSEKMKIKVWVYKK 229 (682)
Q Consensus 209 ~~~g~L~lg~~l~I~V~~Y~~ 229 (682)
.|.+.|++...=.|.|..|.-
T Consensus 420 gf~a~mrVR~S~glkv~~~~G 440 (766)
T 3eh2_A 420 GFDAVMRVRTSTGIRAVDFFG 440 (766)
T ss_dssp EEEEEEEEEECTTEEEEEEEE
T ss_pred eeeEEEEEEecCCeEEEEeEC
Confidence 788988887544555666543
No 49
>3si5_X Protein CASC5; BUBR1-blinkin complex, mitotic checkpoint, BUBR1, blinkin/KN chromosome segregation, cell cycle; 2.20A {Homo sapiens}
Probab=46.20 E-value=9.1 Score=22.91 Aligned_cols=12 Identities=25% Similarity=0.562 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHH
Q 005694 621 KQFNDVLEKVCK 632 (682)
Q Consensus 621 ~~~N~fl~~lk~ 632 (682)
-.||+|++.||.
T Consensus 11 infndFIKRLK~ 22 (24)
T 3si5_X 11 IDFNDFIKRLKT 22 (26)
T ss_pred ccHHHHHHHHhc
Confidence 379999999983
No 50
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=45.85 E-value=8.2 Score=30.93 Aligned_cols=39 Identities=13% Similarity=0.233 Sum_probs=24.7
Q ss_pred CChHHHHHHH---HHHHHHhhhhcCchHHHHHHHHHHHHHhc
Q 005694 598 INYPKAVELL---VALRKGCILEQEPKQFNDVLEKVCKICRK 636 (682)
Q Consensus 598 ~~y~ka~~cl---~~~R~~~i~~~e~~~~N~fl~~lk~~~~~ 636 (682)
..|..+..-+ .+++..-.+.+--..|++|++.|+++|.-
T Consensus 30 s~We~vr~~~e~~~~fkav~~E~eR~~lFeeYi~~Lkekcsh 71 (77)
T 2cqn_A 30 AVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHECQH 71 (77)
T ss_dssp CCHHHHHHHHTTSHHHHTCCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHccCHHHHhcCCHHHHHHHHHHHHHHHHHHHcc
Confidence 3455444333 34544444444456899999999999974
No 51
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=33.82 E-value=50 Score=26.25 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=28.1
Q ss_pred ChHHHHHHHHHHHHHhhhhcCchHHHHHHHHHHHHH
Q 005694 599 NYPKAVELLVALRKGCILEQEPKQFNDVLEKVCKIC 634 (682)
Q Consensus 599 ~y~ka~~cl~~~R~~~i~~~e~~~~N~fl~~lk~~~ 634 (682)
..+.|+.-|...++.+. ++|+.|++||.-|+..-
T Consensus 3 ~~~dA~~yl~~VK~~F~--~~p~~Y~~FL~im~~~k 36 (77)
T 2czy_A 3 HVEDALTYLDQVKIRFG--SDPATYNGFLEIMKEFK 36 (77)
T ss_dssp SHHHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHc--cChHHHHHHHHHHHHHH
Confidence 35678899999999885 47999999999888654
No 52
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=29.79 E-value=18 Score=25.68 Aligned_cols=15 Identities=33% Similarity=0.306 Sum_probs=12.4
Q ss_pred ccCcCCCCHHHHhcc
Q 005694 658 EAVDSDITDDEAGSF 672 (682)
Q Consensus 658 E~~~s~vt~~ea~~F 672 (682)
|..-|..|++||+||
T Consensus 2 ~~s~tGLT~~EA~Ef 16 (45)
T 1lgh_B 2 ERSLSGLTEEEAIAV 16 (45)
T ss_dssp -CCSSSCCHHHHHHH
T ss_pred CCCcCCCCHHHHHHH
Confidence 456789999999998
No 53
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=26.78 E-value=70 Score=25.91 Aligned_cols=35 Identities=11% Similarity=0.357 Sum_probs=27.0
Q ss_pred ChHHHHHHHHHHHHHhhhhcCchHHHHHHHHHHHHHh
Q 005694 599 NYPKAVELLVALRKGCILEQEPKQFNDVLEKVCKICR 635 (682)
Q Consensus 599 ~y~ka~~cl~~~R~~~i~~~e~~~~N~fl~~lk~~~~ 635 (682)
.+..|+.-|...+.... ++|+.|++||.-|+..-.
T Consensus 6 ~~~~A~~yv~kVK~rF~--~~p~~Y~~FL~il~~yk~ 40 (85)
T 1e91_A 6 EFNNAISYVNKIKTRFL--DHPEIYRSFLEILHTYQK 40 (85)
T ss_dssp HHHHHHHHHHHHHHHTS--SCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHHH
Confidence 46778888888888874 478999999988875543
No 54
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=25.42 E-value=50 Score=26.45 Aligned_cols=35 Identities=17% Similarity=0.261 Sum_probs=28.7
Q ss_pred CChHHHHHHHHHHHHHhhhhcCchHHHHHHHHHHHHH
Q 005694 598 INYPKAVELLVALRKGCILEQEPKQFNDVLEKVCKIC 634 (682)
Q Consensus 598 ~~y~ka~~cl~~~R~~~i~~~e~~~~N~fl~~lk~~~ 634 (682)
.....|+.-|...++.+. ++|+.|++||.-|+..-
T Consensus 8 ~~~~dA~~yl~~VK~rF~--~~p~~Y~~FL~im~~fk 42 (80)
T 2cr7_A 8 VHVEDALTYLDQVKIRFG--SDPATYNGFLEIMKEFK 42 (80)
T ss_dssp CCSCCSHHHHHHHHHHTS--SCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHc--cChHHHHHHHHHHHHHH
Confidence 456678899999999885 57999999999888654
No 55
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=22.10 E-value=1e+02 Score=25.18 Aligned_cols=34 Identities=12% Similarity=0.311 Sum_probs=27.4
Q ss_pred CChHHHHHHHHHHHHHhhhhcCchHHHHHHHHHHHH
Q 005694 598 INYPKAVELLVALRKGCILEQEPKQFNDVLEKVCKI 633 (682)
Q Consensus 598 ~~y~ka~~cl~~~R~~~i~~~e~~~~N~fl~~lk~~ 633 (682)
..+..|+..|...+..+.. +|+.|++||.-|+..
T Consensus 8 ~~~~~A~~YvnkVK~rF~~--~p~~Y~~FL~IL~~y 41 (89)
T 1g1e_B 8 VEFNHAINYVNKIKNRFQG--QPDIYKAFLEILHTY 41 (89)
T ss_dssp HHHHHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcc--ChHHHHHHHHHHHHH
Confidence 3567888888888888854 789999999888754
No 56
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=20.15 E-value=1.1e+02 Score=25.77 Aligned_cols=31 Identities=13% Similarity=0.397 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHhhhhcCchHHHHHHHHHHH
Q 005694 600 YPKAVELLVALRKGCILEQEPKQFNDVLEKVCK 632 (682)
Q Consensus 600 y~ka~~cl~~~R~~~i~~~e~~~~N~fl~~lk~ 632 (682)
+..|+..|...+..+. ++|+.|++||.-|+.
T Consensus 7 ~~dA~~YvnkVK~rF~--d~p~vY~~FL~IL~~ 37 (105)
T 2f05_A 7 FNNAISYVNKIKTRFL--DHPEIYRSFLEILHT 37 (105)
T ss_dssp HHHHHHHHHHHHHHTT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc--cChHHHHHHHHHHHH
Confidence 4556666666666553 266666666665553
Done!