Query 005696
Match_columns 682
No_of_seqs 241 out of 448
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 12:22:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005696.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005696hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2194 Aminopeptidases of the 100.0 4E-120 8E-125 1032.3 48.6 594 1-674 209-834 (834)
2 PF04389 Peptidase_M28: Peptid 98.9 1.5E-10 3.3E-15 113.0 -0.8 103 3-106 75-179 (179)
3 KOG2195 Transferrin receptor a 95.0 0.043 9.3E-07 65.2 6.8 89 7-98 427-516 (702)
4 PRK10199 alkaline phosphatase 91.7 0.5 1.1E-05 52.0 7.6 113 7-122 195-344 (346)
5 PF09940 DUF2172: Domain of un 81.3 1.8 4E-05 47.9 4.5 104 6-122 193-308 (386)
6 COG2234 Iap Predicted aminopep 76.6 4.1 9E-05 45.5 5.7 108 2-118 272-392 (435)
7 PF10190 Tmemb_170: Putative t 49.7 1.7E+02 0.0036 27.1 9.5 48 178-226 33-80 (105)
8 PF10337 DUF2422: Protein of u 39.1 4.9E+02 0.011 29.7 13.6 33 340-372 186-218 (459)
9 PF12911 OppC_N: N-terminal TM 34.7 45 0.00097 26.4 3.1 36 407-442 8-43 (56)
10 COG4882 Predicted aminopeptida 32.1 77 0.0017 35.5 5.2 88 6-121 263-359 (486)
11 PF05421 DUF751: Protein of un 29.3 2.2E+02 0.0048 23.8 6.3 33 387-423 11-43 (61)
12 PF05297 Herpes_LMP1: Herpesvi 23.4 27 0.00058 37.6 0.0 18 302-319 159-176 (381)
No 1
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=100.00 E-value=3.7e-120 Score=1032.28 Aligned_cols=594 Identities=29% Similarity=0.473 Sum_probs=521.3
Q ss_pred CCCCCcccCcEEEeecccCCCCcceeeccCCCHHHHHHHHHhCCCCcccchHHHHHhcCCCCCCCcchhhhhcCCCceee
Q 005696 1 MQHPWSTTIRVAIDLEAMGIGGKSGLFQAGPHPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGLD 80 (682)
Q Consensus 1 TqH~wa~~v~a~iNLEa~G~gGr~~lFqtg~~~~lv~~y~~~a~~P~a~sla~eif~~GiipsdTDf~if~~~g~~~GlD 80 (682)
|||||+++||++|||||+|+||||+|||+||++|++|+|++++|||||++++||+||+|+|||||||||||||||+||||
T Consensus 209 tQH~w~~~~ka~INLea~GsGGreiLFQagp~~wl~k~Y~~~~phPf~stlgee~Fq~g~IpSdTDfrif~eyg~l~GLD 288 (834)
T KOG2194|consen 209 TQHPWSKNIKAVINLEAAGSGGREILFQAGPNHWLLKAYLQAAPHPFASTLGEELFQSGIIPSDTDFRIFREYGHLPGLD 288 (834)
T ss_pred ecChhhhhhheEEeccccCcccceeEEecCCchHHHHHHHhhCCCchhhhhHHHhhhcCcCccccchHHHHHhCCcccce
Confidence 79999999999999999999999999999996699999999999999999999999999999999999999999999999
Q ss_pred EeeecCCCccCCCCCCcCCCChhhHHHHHHHHHHHHHHhhcCCCCCCCCCccccCCCCCCCeEEecccCceEEEEechhH
Q 005696 81 FAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASSTSLPKGNAMEKEGKTVHETAVYFDILGTYMVLYRQGFA 160 (682)
Q Consensus 81 ~A~~~n~~~YHT~~D~~~~i~~gslQh~Gdn~L~l~~~la~~~~l~~~~~~~~~~~~~~~~~VyFd~lG~~~v~y~~~~~ 160 (682)
||++.|||+|||++|..++++|||+||+|||+|+++|.++|+ |++ +.++.+++ +||||++|+||+.|+++++
T Consensus 289 ~A~~~Ng~vYHTk~D~~~~i~~gs~q~tGen~L~~v~~lan~-el~------~~~~~~~g-~vyfdv~g~~~~~y~~~~~ 360 (834)
T KOG2194|consen 289 MAFVKNGYVYHTKYDGIQYIPPGSLQHTGENILALVRSLANS-ELD------NSTERSKG-TVYFDVVGKYFLAYSESTG 360 (834)
T ss_pred eeeeeccceEEeecccccccCcchhhhhhhHHHHHHHHHhch-hhc------cccccCCC-ceehhhhhhhhheeehhhh
Confidence 999999999999999999999999999999999999999998 554 24556667 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccchhHHHHHHHHHH
Q 005696 161 NMLHNSVIVQSLLIWTASLVMGGYPAAVSLALTCLSAILMLVFSVSFAVVIAFILPQISSSPVPYVANPWLAVGLFAAPA 240 (682)
Q Consensus 161 ~~ln~~v~~~~lll~~~sl~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vA~~~~~~~~~~msw~s~~~l~igLy~~pa 240 (682)
++||+++.. .++ ....|++.+.++++.++|+.+++++++++++++++|++++.+ +.+|+||++||+++|||.||+
T Consensus 361 ~iLNi~i~~---~i~-l~~~~~g~~~~~~f~~~~~~~i~s~~~~~~l~~~~a~~l~~v-~l~~sw~s~p~l~~~ly~~p~ 435 (834)
T KOG2194|consen 361 VILNITICI---SIW-LMSLRSGSSQLGKFILACLLQILSIVVAIGLPVLVALFLDWV-GLPLSWFSNPWLLLGLYYLPS 435 (834)
T ss_pred hhhhhhhhh---hhh-hhhhcccchhhhhHHHHHHHHHHHHHHHHhhHHHHHHHhhcc-cccceeecchHHHHHHHHhHH
Confidence 999933222 222 334444444688999999999999999999999999999998 469999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHhHHH
Q 005696 241 FLGALTGQHLGYIILKAYLANMFSKRMQLSPIVQADLIKLEAERWLFKAGFLQWLILLALGNFYKIGSTFIALFWLVPPA 320 (682)
Q Consensus 241 l~g~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~a~~~~~~~l~~~~t~~~i~SaYl~~~~~~f~~ 320 (682)
++|+.++|.++. ...|+. .+. .++.+++.+|+ +|++|++++|++|+||+|++++|+++|+
T Consensus 436 ~~gl~~~~~~y~-~~~~~~--------~~~--------~~~~~ql~~h~---~l~~l~~~~t~y~I~S~y~~~~~~~~~v 495 (834)
T KOG2194|consen 436 LFGLAILQALYA-KRSKRH--------SLE--------YLQHDQLLLHS---LLSILLIIMTYYGIRSAYLPLLLLLFYV 495 (834)
T ss_pred HHHhhHHHHHHH-hhcccc--------ccc--------hhhHHHHHHHH---HHHHHHHHheecccchhHHHHHHHHHHH
Confidence 999999998732 221111 111 13567888887 7888999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCchHHHHHHHhHHhHHHHHHHHHHHHHHHhccccccCCCCCCCCcccchHHHHHHHHHHHHHH
Q 005696 321 FAYGFLEATLTPVRFPRPLKLATLLLGLAVPVLVSAGNFIRLANVIVAIVVRFDRNPGGTPEWLGNVILAVFIAVVLCLT 400 (682)
Q Consensus 321 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~P~l~~~~l~~~~~~~fiPm~gR~g~~~~~~Pd~~~d~iIA~l~a~~~~l~ 400 (682)
++ .++++.+++|.++..|..++++||+.|+.+.+|.++.++.+|||||||+|.+. ||| .+||.++++++.+.
T Consensus 496 ~~--~~~~~~~~l~~~~~~~~~~~~i~~~~p~~~~ay~~~~~~~~fipm~Gr~g~~~--nPd----~~i~~~~~~~~~l~ 567 (834)
T KOG2194|consen 496 IS--YLLNTLTILHLCGTLYLITLLICQVGPFLFAAYSTYSLVRTFIPMMGRFGNAS--NPD----LSISFLNAFGANLI 567 (834)
T ss_pred HH--HHHhhceeeccCCceeeeeeeeeehHhHHHHHHHHHHHHHeeeccccccCCCC--Cch----HHHHHHHHHHHHhh
Confidence 99 55778899999999999999999999999999999999999999999999765 998 99999999999999
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhCCCCCCCCCC-cceeEEEEEEecCCCCCCC---CCCCceeecccCC
Q 005696 401 LVYLLSYVHLSGAKRPIAIASCVLFVLSLILVLSGTVPPFSEDT-ARAVNVVHVVDASGKFGGK---QEPSSFIALYSTT 476 (682)
Q Consensus 401 ~~fl~Pli~~~~~~~~i~~~l~~v~~~~~~l~~~~~~fPy~~~t-~~Rv~v~Hv~r~~~~~~~~---~D~~~~~~l~~~~ 476 (682)
++|++|++|+||+++.|+.++++++.+++++++|+++|||++++ +||++++|++|+++++.+. +|+++++...|+.
T Consensus 568 ~~f~i~l~~~fr~~~~i~~~l~~I~~~~~~i~~T~~~fPy~~~~~~~r~~~lH~~rtf~~~~~~~~~~ds~~~i~~~D~r 647 (834)
T KOG2194|consen 568 VGFLIPLVHLFRRSKSIILGLFGITAVILIIASTSIGFPYRPKTTVQRVPVLHVRRTFYDRDGTSSQNDSGYFINSQDRR 647 (834)
T ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHhcCCcCCccccccceeEEEEecccceecccCceeecccceeeeecccc
Confidence 99999999999999999999988888888889999999999774 5799999999999877776 7888888887655
Q ss_pred CC--------CchhhH---hhccccccCCCCCccccccceeeeeeeeecCCCCcccCCCCC-------ceeeeccccccc
Q 005696 477 PG--------KLTKEV---EQIKEGFVCGRDNVVDFVTLSMEYGCLTYDGTEGGWSQSDVP-------TIHVESEGFGIM 538 (682)
Q Consensus 477 ~~--------~l~~~~---~~c~~e~~CG~p~~~df~~~~~y~~~~~~~~~~~~Wlp~~~P-------~l~~~~k~~~~~ 538 (682)
.. ++++++ .+|+.+++||+| +|+ |.+.+.+++|+|+++| .+.+++|+
T Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p---------~y~--w~~~~~~~~~vp~~~~v~~~~~~~l~l~sk~---- 712 (834)
T KOG2194|consen 648 GAEVLPFTKSNLTDLSSVQADCDDEMMCGMP---------VYN--WIKPREQSLWVPNPEPVIGPYPPNLKLLSKT---- 712 (834)
T ss_pred cccCCcchhhcccccccccccccccccCCce---------eee--ccccCccceEecCCccccCCCCceEEEeecc----
Confidence 32 233443 568999999999 887 9999999999999876 45555555
Q ss_pred cccccCCCCeEEEEEEEcCCCcEEEEEec---eEecceeeccCCcccccCCcCCCCCCcEEEEEEcC-CCCceEEEEEEE
Q 005696 539 DTKGNDNGRITKVSIDMKGSVRWSLAIDA---EEIEDFTFKEGSEELVPRDEKSGMDGWHIIQFSGG-KNAVSKFDLDLY 614 (682)
Q Consensus 539 ~~~~~~~~~~~r~~f~~~gp~~~sl~I~p---~~i~~WSf~~~~~~~~~~~~~~~~~~~y~i~~s~G-~~sP~~F~lel~ 614 (682)
..+ +++.|++|+++|++||++||+| +++.+|||.++ + +.+ + ..+|+||++|| ++.|++||+|++
T Consensus 713 ---~~~-~~~~r~~~~i~~~d~~s~~i~p~~d~~~~~wsf~~~---~--~~~--~-~~~~~i~~~yg~~~~p~~F~lel~ 780 (834)
T KOG2194|consen 713 ---SLD-NGNLRYEFSITGTDHISLFISPLNDVKVLDWSFTTS---P--LTE--N-KTPYHIYFSYGLDSTPLNFWLELE 780 (834)
T ss_pred ---ccC-CCceEEEEEEeccCceEEEEEecCCceEEEEeccCC---c--ccc--c-CCceEEEEEeecCCCCceEEEEEe
Confidence 554 6689999999999999999999 59999999644 4 333 2 22699999999 899999999999
Q ss_pred eccCCccccccccccccCCCeEEEe------ccccCCCHHHHHHHhcCCCcccccCCCCCcchhhh
Q 005696 615 WAKNSTESYHNANRKEKQRPLLKLR------TDFDRLTPKTERVLSKLPAWCSLFGKSTSPQTLSF 674 (682)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~p~~~l~------~~~~~~t~~~~~fl~~fP~wa~~fgk~~sp~~l~~ 674 (682)
+.++ ++++| +|++ +|.+++||+.++|+++||+||+.++|++|+....|
T Consensus 781 ~~~~-----------~~~v~-~k~~~~~h~~~~~~~~t~~~~~~~~~lP~~~~~~~~~~~~~~~~~ 834 (834)
T KOG2194|consen 781 KEEG-----------VTDVP-FKLGVSAHYIHDLELITPEYKEFLETLPSWAATVDWSTSYESWIF 834 (834)
T ss_pred eccC-----------ccCCc-eEEeeeeeeccchhhcCHHHHHHHHhCCchhhccccccchhheeC
Confidence 9944 77888 8888 57899999999999999999999999999987654
No 2
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=98.91 E-value=1.5e-10 Score=113.04 Aligned_cols=103 Identities=26% Similarity=0.418 Sum_probs=84.5
Q ss_pred CCCcccCcEEEeecccCCCCcceeeccCC-CHHHHHHHHHhCCCCcccchHHHHHhcCCCCCCCcchhhhhcCCCceeeE
Q 005696 3 HPWSTTIRVAIDLEAMGIGGKSGLFQAGP-HPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGLDF 81 (682)
Q Consensus 3 H~wa~~v~a~iNLEa~G~gGr~~lFqtg~-~~~lv~~y~~~a~~P~a~sla~eif~~GiipsdTDf~if~~~g~~~GlD~ 81 (682)
|.+.++++++||||..|.|++.+++++++ .++.++.+.+..++|.+.....+..+....+..+|...|.. .|+|++.+
T Consensus 75 ~~~~~~~~~~inlD~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sD~~~F~~-~gip~~~~ 153 (179)
T PF04389_consen 75 HEELDNIAAVINLDMIGSGDPTVYSEGSPSLPSRLEAYLSSFKQPYGSSLGPDVPPEKPTFGGSDHYPFSK-AGIPAVTL 153 (179)
T ss_dssp HCHHHHEEEEEEECSSBSSSSEEEEEEGGGHHHHHHHHHHHHHHHHHCHTSSECEEEESSTTSSTCHHHHT-TT-EEEEE
T ss_pred hcccccceeEEeccccccCcccceeeeeccccchhhhhhhhhhhhhhcccccccccccCCCCCCCcHhhhc-CCEeEEEE
Confidence 46788999999999999999999999877 35656666655566777777777775566788999999996 99999999
Q ss_pred eeec-CCCccCCCCCCcCCCChhhHH
Q 005696 82 AYTD-KSAVYHTKNDKLDLLKPGSLQ 106 (682)
Q Consensus 82 A~~~-n~~~YHT~~D~~~~i~~gslQ 106 (682)
.... ....|||+.|+++++++++||
T Consensus 154 ~~~~~~~~~~Ht~~Dt~~~~~~~~l~ 179 (179)
T PF04389_consen 154 SSTDGYNPYYHTPEDTPDNLDPDTLQ 179 (179)
T ss_dssp EESSSSGTTTTSTT-SGGGC-HHHH-
T ss_pred EecCCCCCCCCCcccChhhcCCccCC
Confidence 9999 889999999999999999998
No 3
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=95.00 E-value=0.043 Score=65.17 Aligned_cols=89 Identities=18% Similarity=0.356 Sum_probs=68.6
Q ss_pred ccCcEEEeecccCCCCcceeeccCC-CHHHHHHHHHhCCCCcccchHHHHHhcCCCCCCCcchhhhhcCCCceeeEeeec
Q 005696 7 TTIRVAIDLEAMGIGGKSGLFQAGP-HPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGLDFAYTD 85 (682)
Q Consensus 7 ~~v~a~iNLEa~G~gGr~~lFqtg~-~~~lv~~y~~~a~~P~a~sla~eif~~GiipsdTDf~if~~~g~~~GlD~A~~~ 85 (682)
....+.||++.++.|--.+-.++.| -.-+++.-++..+.|.-.-..+.+-+ ..++|||.-|-.|.|||+.|++|..
T Consensus 427 ~~av~yin~d~~~~~~~~l~~~~~PlL~~li~~~~k~~~~p~~~~~~~~v~~---~g~~Sd~~~F~~~~GIpsv~~~f~~ 503 (702)
T KOG2195|consen 427 SRAVVYINVDNAVLGDYTLHVKTTPLLTDLIEEAAKSVLSPDKGDQSNRVLS---LGGGSDYASFLQFAGIPSVDFAFNR 503 (702)
T ss_pred heeEEEEeccccccCCceeEEecCccHHHHHHHHHhccCCCCccccceeEec---cCCCCcchhhccccCcceeeeeecC
Confidence 4567899999999986666677666 34455555555677776555553332 3999999999999999999999999
Q ss_pred CCCccCCCCCCcC
Q 005696 86 KSAVYHTKNDKLD 98 (682)
Q Consensus 86 n~~~YHT~~D~~~ 98 (682)
....|||.+||++
T Consensus 504 ~yP~yhs~~dt~~ 516 (702)
T KOG2195|consen 504 TYPFYHSTYDTYE 516 (702)
T ss_pred CcceeecccCcHH
Confidence 9999999999933
No 4
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=91.71 E-value=0.5 Score=51.96 Aligned_cols=113 Identities=18% Similarity=0.324 Sum_probs=66.5
Q ss_pred ccCcEEEeecccCCCCcceeeccCCC-HH-H-------HHHHHHhCCCCccc-chHHHHHhcCCCCCCCcchhhhhcCCC
Q 005696 7 TTIRVAIDLEAMGIGGKSGLFQAGPH-PW-A-------VENFAAAAKYPSGQ-VTAQDLFASGAITSATDFQVYKEVAGL 76 (682)
Q Consensus 7 ~~v~a~iNLEa~G~gGr~~lFqtg~~-~~-l-------v~~y~~~a~~P~a~-sla~eif~~GiipsdTDf~if~~~g~~ 76 (682)
+++.++||+|+.|. |..+.|-+|.+ +. + +++.++...++... .-.+..|-.| ...-+|--.|.+ .||
T Consensus 195 ~~~~~~iNlD~~~~-~d~~~~~~g~~~~~~~~~~~~d~~~~~a~~~g~~~~~~~~~~~~~p~g-~~~rSDH~~F~~-~GI 271 (346)
T PRK10199 195 KNTLLVINLDNLIV-GDKLYFNSGVNTPEAVRKLTRDRALAIARRHGIAATTNPGLNKNYPKG-TGCCNDAEVFDK-AGI 271 (346)
T ss_pred hcEEEEEEeccCCC-CCceEEecCCCcHHHHhHHHHHHHHHHHHHcCCccccCCCccccccCC-CcCCcccHHHHh-cCC
Confidence 57889999999987 57777776653 32 1 22222221121111 1112223233 233467778888 889
Q ss_pred ceeeEe-----------ee--------cCCCccC-CCCCCcCCCCh---hhH-HHHHH---HHHHHHHHhhcC
Q 005696 77 SGLDFA-----------YT--------DKSAVYH-TKNDKLDLLKP---GSL-QHLGE---NMLAFLLQAASS 122 (682)
Q Consensus 77 ~GlD~A-----------~~--------~n~~~YH-T~~D~~~~i~~---gsl-Qh~Gd---n~L~l~~~la~~ 122 (682)
|.+-+. +- -.|...| |.+|+.+++++ |=+ |++-| -+++|+++|+++
T Consensus 272 P~l~~~a~n~~~g~~d~~~q~~~~~~~~~g~~~h~~~~d~~~~l~~~~pgri~~~~~~~~~~~~~~~~~~~~~ 344 (346)
T PRK10199 272 PVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVVRIMLPLVKELAKA 344 (346)
T ss_pred CeEEeeccccccCCcccceecccCccCCCCccccCcCcchHHHHHHhcchHHHHHHHhHHHHHHHHHHHHhcc
Confidence 998772 22 2367789 89999988764 333 33333 357788888875
No 5
>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis. The ste gene cluster (for Streptomyces eps) is involved in exopolysaccharide EPS 139A biosynthesis in Streptomyces sp. 139 []. Members of this group exhibit distant sequence similarity to aminopeptidases (IPR007484 from INTERPRO, MEROPS peptidase family M28).; PDB: 3K9T_A.
Probab=81.32 E-value=1.8 Score=47.86 Aligned_cols=104 Identities=17% Similarity=0.262 Sum_probs=56.4
Q ss_pred cccCcEEEeecccCCCCcceeeccCC--CHHHHHHHHH---hCCCCcccchHHHHHhcCCCCCCCcchhhhhcCCCceee
Q 005696 6 STTIRVAIDLEAMGIGGKSGLFQAGP--HPWAVENFAA---AAKYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGLD 80 (682)
Q Consensus 6 a~~v~a~iNLEa~G~gGr~~lFqtg~--~~~lv~~y~~---~a~~P~a~sla~eif~~GiipsdTDf~if~~~g~~~GlD 80 (682)
.++|++-+||+..|..|.-- |+.++ |..+=++.+. +...+|. ++ ...|-..|=|+|-. ||+|
T Consensus 193 ~~~v~~G~vLtcvGD~~~~s-yk~Sr~g~~~iDr~~~~vl~~~~~~~~------~~--~F~~~GsDERQfcS----PG~d 259 (386)
T PF09940_consen 193 KKNVKAGLVLTCVGDDGAYS-YKRSRRGNTLIDRAAAHVLKHSGPNFK------IY--DFLPRGSDERQFCS----PGFD 259 (386)
T ss_dssp GG-EEEEEE--S--SSS-EE-EE--TTSSSHHHHHHHHHHHHSSS-EE------EE-----S-SSTHHHHTS----TTT-
T ss_pred hhheeeeEEEEEecCCCCcc-eecCCCCCcHHHHHHHHHHHhcCCCce------Ee--cccccCCCcceeec----CCcC
Confidence 34599999999999999544 44344 3322233322 2111111 11 13677889999865 6655
Q ss_pred Ee--eecCCC-----ccCCCCCCcCCCChhhHHHHHHHHHHHHHHhhcC
Q 005696 81 FA--YTDKSA-----VYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASS 122 (682)
Q Consensus 81 ~A--~~~n~~-----~YHT~~D~~~~i~~gslQh~Gdn~L~l~~~la~~ 122 (682)
+. -+.++- -|||..|+++.|+|+.|+..-+-++..+..+-+.
T Consensus 260 LPv~~~~Rs~yg~ypEYHTS~Dnl~fi~p~~L~~s~~~~~~~i~~lE~n 308 (386)
T PF09940_consen 260 LPVGSLMRSKYGEYPEYHTSLDNLDFISPEGLEGSFEVLLEAIEILENN 308 (386)
T ss_dssp --EEEEESS-TT--TTTTBTTSSGGG--HHHHHHHHHHHHHHHHHHHH-
T ss_pred CceeeeecccccCCcccccCCCccccCCHHHHHHHHHHHHHHHHHHhcC
Confidence 43 333332 7999999999999999999888888888777553
No 6
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=76.64 E-value=4.1 Score=45.49 Aligned_cols=108 Identities=19% Similarity=0.207 Sum_probs=67.5
Q ss_pred CCCC---cccCcEEEeecccCCCCcceeeccCC---C--HHHHHHHHHhCCCCcccchHHHHHhcCCCCCCCcchhhhhc
Q 005696 2 QHPW---STTIRVAIDLEAMGIGGKSGLFQAGP---H--PWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEV 73 (682)
Q Consensus 2 qH~w---a~~v~a~iNLEa~G~gGr~~lFqtg~---~--~~lv~~y~~~a~~P~a~sla~eif~~GiipsdTDf~if~~~ 73 (682)
+|++ .+.++++||+|+.|...+.--+|... + +-..+...+...++... .+. .......|..-|.+
T Consensus 272 ~~~~~~~~~~~~~viN~Dm~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~sd~~~f~~- 344 (435)
T COG2234 272 KRLSKDLDKKIALVINLDMLGSPNPTPTLILYGNGLERVPPGLRAVAALIGRPVDP-----STV-QDFDPRSDHYPFTE- 344 (435)
T ss_pred hcCCcchhhhhheEEecccccCCCCCcceEEeccCCccccchHHHHHHHHHhhccc-----ccc-CCCCCCCcchhhhh-
Confidence 3555 56788899999999988544444221 1 11222222222222221 111 12344556666777
Q ss_pred CCCceeeEeeecCCC-----ccCCCCCCcCCCChhhHHHHHHHHHHHHHH
Q 005696 74 AGLSGLDFAYTDKSA-----VYHTKNDKLDLLKPGSLQHLGENMLAFLLQ 118 (682)
Q Consensus 74 g~~~GlD~A~~~n~~-----~YHT~~D~~~~i~~gslQh~Gdn~L~l~~~ 118 (682)
+|+|.+.++.-.... .+||..|+ +. +..++++.|+.+-+....
T Consensus 345 ~gi~~~~~~~~~~~~~~~~~~~~t~~d~-~~-d~~~~~~~~~~~~~~~~~ 392 (435)
T COG2234 345 AGIPSLFLFSGAPGGVEAVAWGHTAADT-DK-DLSTLDQHGDAVAATLVL 392 (435)
T ss_pred cCCcceeeeecCCccccccccccccccc-cc-chhhhcccchhhhhhhhh
Confidence 889998888777774 89999999 88 999999999666554433
No 7
>PF10190 Tmemb_170: Putative transmembrane protein 170; InterPro: IPR019334 This entry represents a group of putative transmembrane proteins conserved from nematodes to humans. The protein is only approximately 130 amino acids in length. The function is unknown.
Probab=49.70 E-value=1.7e+02 Score=27.14 Aligned_cols=48 Identities=8% Similarity=-0.011 Sum_probs=34.4
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccc
Q 005696 178 SLVMGGYPAAVSLALTCLSAILMLVFSVSFAVVIAFILPQISSSPVPYV 226 (682)
Q Consensus 178 sl~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vA~~~~~~~~~~msw~ 226 (682)
.+++-+......+.+...+.+.....+...++++|.++..- +.+|++.
T Consensus 33 ~lRkhk~~~f~pi~~l~mg~l~p~~~G~itSa~IA~vY~a~-~~~M~~~ 80 (105)
T PF10190_consen 33 TLRKHKFGRFIPIVILLMGVLGPLTGGSITSAAIAGVYRAA-GFRMSTW 80 (105)
T ss_pred HHhhccchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc-CCcccHH
Confidence 44444434456666666677778888889999999999865 6888875
No 8
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=39.11 E-value=4.9e+02 Score=29.66 Aligned_cols=33 Identities=18% Similarity=0.054 Sum_probs=25.4
Q ss_pred hHHHHHHHhHHhHHHHHHHHHHHHHHHhccccc
Q 005696 340 KLATLLLGLAVPVLVSAGNFIRLANVIVAIVVR 372 (682)
Q Consensus 340 ~~~~~~~~~~~P~l~~~~l~~~~~~~fiPm~gR 372 (682)
....+.-..+.|++....+....-.++.|.++|
T Consensus 186 ~~~~l~~~ll~P~~ig~ai~~~vslliFP~sss 218 (459)
T PF10337_consen 186 FAYTLGKTLLKPFLIGIAIALVVSLLIFPESSS 218 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHheeecCCCch
Confidence 345555567789998888888888888888877
No 9
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=34.65 E-value=45 Score=26.37 Aligned_cols=36 Identities=14% Similarity=0.283 Sum_probs=23.8
Q ss_pred HHHHhCCchhHHHHHHHHHHHHHHHHhhCCCCCCCC
Q 005696 407 YVHLSGAKRPIAIASCVLFVLSLILVLSGTVPPFSE 442 (682)
Q Consensus 407 li~~~~~~~~i~~~l~~v~~~~~~l~~~~~~fPy~~ 442 (682)
...++++.|.-+.++.++.++.++.+..+...||++
T Consensus 8 ~~~~f~~nk~a~~gl~il~~~vl~ai~~p~~~p~~~ 43 (56)
T PF12911_consen 8 AWRRFRRNKLAVIGLIILLILVLLAIFAPFISPYDP 43 (56)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 345677777777777666665566566677778853
No 10
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=32.08 E-value=77 Score=35.46 Aligned_cols=88 Identities=15% Similarity=0.151 Sum_probs=53.3
Q ss_pred cccCcEEEeecccCCCCcceeeccCCCHHHHHHHHHh------CCCCcccchHHHHHhcCCCCCCCcchhhhhcCCCcee
Q 005696 6 STTIRVAIDLEAMGIGGKSGLFQAGPHPWAVENFAAA------AKYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGL 79 (682)
Q Consensus 6 a~~v~a~iNLEa~G~gGr~~lFqtg~~~~lv~~y~~~------a~~P~a~sla~eif~~GiipsdTDf~if~~~g~~~Gl 79 (682)
+++|-+-||+|-+|-+-.-+ -+ -|.|++.-+++ .|-|+..+...+- .|||-+
T Consensus 263 ~~~v~~~VN~Dv~g~~~lv~--~~--~P~L~e~~~~~g~~~vespe~y~Ds~~y~~------------------aGiPS~ 320 (486)
T COG4882 263 AEEVEAYVNFDVAGYRCLVA--SG--APQLVEHALEAGAVEVESPEPYCDSIMYAW------------------AGIPSL 320 (486)
T ss_pred chhhhheeccccccccchhh--hc--ChHHHHHHHHhCCceecCCCcccchhhhhh------------------cCCCee
Confidence 45677899999998765421 22 24454443332 4566666555432 667777
Q ss_pred eEeeec---CCCccCCCCCCcCCCChhhHHHHHHHHHHHHHHhhc
Q 005696 80 DFAYTD---KSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAAS 121 (682)
Q Consensus 80 D~A~~~---n~~~YHT~~D~~~~i~~gslQh~Gdn~L~l~~~la~ 121 (682)
-+--.. -+..|||+.|++... ..--.++.+++.+++
T Consensus 321 Ti~SL~~~~~~e~yh~p~Dtpa~~------~n~~t~~d~a~r~v~ 359 (486)
T COG4882 321 TIHSLWCPGVQEAYHTPRDTPASW------DNAWTAVDAAVRTVT 359 (486)
T ss_pred EeeeccCCCccceecCCCCCchhH------HHHHHHHHHHHHHHh
Confidence 776665 457899999997322 233345556666664
No 11
>PF05421 DUF751: Protein of unknown function (DUF751); InterPro: IPR008470 This family, Ycf33, contains several plant, cyanobacterial and algal chlorplast encoded proteins of unknown function. The family is exclusively found in phototrophic organisms and may therefore play a role in photosynthesis.
Probab=29.25 E-value=2.2e+02 Score=23.83 Aligned_cols=33 Identities=15% Similarity=0.098 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Q 005696 387 VILAVFIAVVLCLTLVYLLSYVHLSGAKRPIAIASCV 423 (682)
Q Consensus 387 ~iIA~l~a~~~~l~~~fl~Pli~~~~~~~~i~~~l~~ 423 (682)
..|++. +.+....+-|+..+.|+|.+-+...++
T Consensus 11 y~is~~----lG~~~~~~~pl~~llk~p~tai~~i~~ 43 (61)
T PF05421_consen 11 YFISVM----LGLFLIIFEPLKPLLKNPVTAIALIGI 43 (61)
T ss_pred HHHHHH----HHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 445444 445567889999999998876655433
No 12
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=23.40 E-value=27 Score=37.57 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=0.0
Q ss_pred hhhccCchhHHHHHHhHH
Q 005696 302 NFYKIGSTFIALFWLVPP 319 (682)
Q Consensus 302 t~~~i~SaYl~~~~~~f~ 319 (682)
-...|=..-+=++|++..
T Consensus 159 L~qaWfT~L~dL~WL~LF 176 (381)
T PF05297_consen 159 LHQAWFTILVDLYWLLLF 176 (381)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444445555666543
Done!