Query 005696
Match_columns 682
No_of_seqs 241 out of 448
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 04:52:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005696.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005696hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kas_A Transferrin receptor pr 99.4 1.5E-13 5.2E-18 158.1 5.6 123 5-127 354-489 (640)
2 3fed_A Glutamate carboxypeptid 99.2 6.9E-12 2.4E-16 145.7 7.7 122 5-126 399-551 (707)
3 4fuu_A Leucine aminopeptidase; 99.1 1.2E-11 4.2E-16 130.2 2.0 112 3-117 188-306 (309)
4 3tc8_A Leucine aminopeptidase; 98.7 7.9E-09 2.7E-13 109.2 3.7 108 3-117 185-307 (309)
5 3gux_A Putative Zn-dependent e 98.6 1.3E-08 4.5E-13 107.8 3.7 108 3-117 188-311 (314)
6 4f9u_A CG32412; alpha/beta hyd 98.5 2.6E-07 8.8E-12 97.1 10.7 115 7-124 181-302 (312)
7 1tkj_A Aminopeptidase, SGAP; d 98.5 7.4E-08 2.5E-12 100.0 6.4 111 6-126 150-282 (284)
8 4fai_A CG5976, isoform B; alph 98.5 1.4E-07 4.6E-12 100.5 6.5 114 4-118 192-321 (330)
9 3iib_A Peptidase M28; YP_92679 98.4 2.2E-07 7.6E-12 102.6 7.8 110 7-125 322-436 (444)
10 2afw_A Glutaminyl-peptide cycl 98.3 1.3E-06 4.4E-11 92.7 10.6 101 6-118 206-325 (329)
11 2ek8_A Aminopeptidase; metallo 98.3 7.7E-07 2.6E-11 97.4 7.0 111 5-126 290-406 (421)
12 3pb6_X Glutaminyl-peptide cycl 98.2 1.4E-06 4.7E-11 92.9 6.8 111 5-118 206-326 (330)
13 1rtq_A Bacterial leucyl aminop 97.9 3.3E-05 1.1E-09 80.5 9.2 111 7-126 170-293 (299)
14 3k9t_A Putative peptidase; str 97.4 7.7E-05 2.6E-09 81.4 4.7 108 6-123 242-357 (435)
15 2wyr_A Cobalt-activated peptid 64.9 7 0.00024 40.4 5.5 96 8-119 220-332 (332)
16 2l8s_A Integrin alpha-1; trans 40.2 42 0.0014 26.3 4.8 35 378-414 5-39 (54)
17 2lx0_A Membrane fusion protein 37.1 31 0.0011 23.3 3.1 18 387-404 7-24 (32)
18 3t68_A Succinyl-diaminopimelat 30.8 22 0.00075 35.5 2.4 54 62-121 215-268 (268)
19 2knc_A Integrin alpha-IIB; tra 20.8 1.6E+02 0.0055 23.0 5.0 34 379-414 9-42 (54)
No 1
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A
Probab=99.39 E-value=1.5e-13 Score=158.08 Aligned_cols=123 Identities=16% Similarity=0.141 Sum_probs=103.1
Q ss_pred CcccCcEEEeecccCCCCcceeeccCC-CHHHHHHHHHhCCCCccc-chHHH-HHh--cCCCCCCCcchhhhhcCCCcee
Q 005696 5 WSTTIRVAIDLEAMGIGGKSGLFQAGP-HPWAVENFAAAAKYPSGQ-VTAQD-LFA--SGAITSATDFQVYKEVAGLSGL 79 (682)
Q Consensus 5 wa~~v~a~iNLEa~G~gGr~~lFqtg~-~~~lv~~y~~~a~~P~a~-sla~e-if~--~GiipsdTDf~if~~~g~~~Gl 79 (682)
+.+++.++||+|++|+|++.+.+|++| ..++++.+++.++||+++ ++.++ .++ .+.+|++|||++|.+++||||+
T Consensus 354 l~~~~~a~iNlD~~~~G~~~l~~~~~p~l~~l~~~~~~~v~~P~~~~tl~~~~~w~~~~~~~~~~sD~~~F~~~~GIP~~ 433 (640)
T 3kas_A 354 LHLKAFTYINLDKAVLGTSNFKVSASPLLYTLIEKTMQNVKHPVTGQFLYQDSNWASKVEKLTLDNAAFPFLAYSGIPAV 433 (640)
T ss_dssp GGGTEEEEEECTTCBSCSSEEEEEECGGGHHHHHHHHTTCBCTTTCSBSCCCTTGGGGCCCCCTTSTHHHHHHHHCCCEE
T ss_pred hhhCEEEEEecccCccCCCceEEEeCHHHHHHHHHHHHhCCCCCCCCceecccccccccCCCCCCcchHHHHHhCCCCee
Confidence 458999999999999999999999888 488999999989999874 44332 343 5789999999999999999999
Q ss_pred eEeeecC-CCc-cCCCCCCcCCCCh------hhHHHHHHHHHHHHHHhhcCCCCCC
Q 005696 80 DFAYTDK-SAV-YHTKNDKLDLLKP------GSLQHLGENMLAFLLQAASSTSLPK 127 (682)
Q Consensus 80 D~A~~~n-~~~-YHT~~D~~~~i~~------gslQh~Gdn~L~l~~~la~~~~l~~ 127 (682)
|++|..+ +|. |||++|+++++++ ...+.++.-+-.++.+|++++.++-
T Consensus 434 ~~~~~~~~~y~~yHT~~Dt~~~i~~~~~~~~~~h~~~a~~~g~l~l~La~~~~lP~ 489 (640)
T 3kas_A 434 SFCFCEDTDYPYLGTTMDTYKELIERIPELNKVARAAAEVAGQFVIKLTHDVELNL 489 (640)
T ss_dssp EEEEECSSCCTTTTSTTCCHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred eccccCCCCCCCcCCccccHHHHHhhcCcHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 9999987 564 9999999998765 3466778888889999999887764
No 2
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...
Probab=99.23 E-value=6.9e-12 Score=145.73 Aligned_cols=122 Identities=17% Similarity=0.211 Sum_probs=99.9
Q ss_pred CcccCcEEEeecccCCCCcceeeccCC-CHHHHHHHHHhCCCCcc----cchHHHHHhc------------CCCCCCCcc
Q 005696 5 WSTTIRVAIDLEAMGIGGKSGLFQAGP-HPWAVENFAAAAKYPSG----QVTAQDLFAS------------GAITSATDF 67 (682)
Q Consensus 5 wa~~v~a~iNLEa~G~gGr~~lFqtg~-~~~lv~~y~~~a~~P~a----~sla~eif~~------------GiipsdTDf 67 (682)
|.+++.++||+|++|+|++.+.+|++| ..++++.+++.++||.+ .++.++-++. +.+.++|||
T Consensus 399 ~~~~~~a~iNlD~~~~g~~~~~~~~sp~l~~~i~~~~~~v~~P~~~~~~~tly~~w~~~~~~~~~~~~p~i~~lgsgSD~ 478 (707)
T 3fed_A 399 LQERSIAYINSDSSIEGNYTLRVDCTPLLYQLVYKLTKEIPSPDDGFESKSLYESWLEKDPSPENKNLPRINKLGSGSDF 478 (707)
T ss_dssp HHHHEEEEEECSCSBSCSSEEEEEECGGGHHHHHHHHTTSBCCSTTCTTSBHHHHHHHHSEETTEEEEECEECCCSSSTT
T ss_pred hhhCEEEEEEecccccCCceEEEecCHHHHHHHHHHHhcCCCCccccccccHHHHHHhhcccccccCCcccccCCCCCCh
Confidence 678999999999999999999999888 58999999999999987 5676666651 235699999
Q ss_pred hhhhhcCCCceeeEeeecC-------CC-ccCCCCCCcCCCCh----h--hHHHHHHHHHHHHHHhhcCCCCC
Q 005696 68 QVYKEVAGLSGLDFAYTDK-------SA-VYHTKNDKLDLLKP----G--SLQHLGENMLAFLLQAASSTSLP 126 (682)
Q Consensus 68 ~if~~~g~~~GlD~A~~~n-------~~-~YHT~~D~~~~i~~----g--slQh~Gdn~L~l~~~la~~~~l~ 126 (682)
++|.+++|||++|++|..+ .| +|||.+|+++++++ + .-+.++.-.-.++.+|++++.++
T Consensus 479 ~~F~~~~GIPs~~~~f~~~~~~~~~~~y~~YHT~~Dt~~~~~~~~Dp~f~~h~~~a~~~g~l~l~La~~~vlP 551 (707)
T 3fed_A 479 EAYFQRLGIASGRARYTKNKKTDKYSSYPVYHTIYETFELVEKFYDPTFKKQLSVAQLRGALVYELVDSKIIP 551 (707)
T ss_dssp HHHHHTTCCCEEEEEEECCTTTCCSSSCTTTTSTTCCHHHHHHHTCTTCHHHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHhCCcceeccccccCccccccCCCCCcCCCcccHHHHHHhcCchHHHHHHHHHHHHHHHHHHhCCccCC
Confidence 9999999999999999966 56 79999999987654 3 22335666667888999887665
No 3
>4fuu_A Leucine aminopeptidase; phosphorylase/hydrolase like fold, peptidase family M28, STR genomics, joint center for structural genomics; 1.30A {Bacteroides thetaiotaomicron}
Probab=99.11 E-value=1.2e-11 Score=130.22 Aligned_cols=112 Identities=20% Similarity=0.225 Sum_probs=79.7
Q ss_pred CCCcccCcEEEeecccCCCCcceeeccCCC---HHHHHHHHHhCCCCcccchHHHHHhcCCCCCCCcchhhhhcCCCcee
Q 005696 3 HPWSTTIRVAIDLEAMGIGGKSGLFQAGPH---PWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGL 79 (682)
Q Consensus 3 H~wa~~v~a~iNLEa~G~gGr~~lFqtg~~---~~lv~~y~~~a~~P~a~sla~eif~~GiipsdTDf~if~~~g~~~Gl 79 (682)
|++.++++++||||..|++++..+++.+.. +.+.+...+.++..-... ....+.|..++ .|+..|.+++|+|++
T Consensus 188 ~~~~~~i~~~inlDmvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-sDh~~F~~~~GIP~l 264 (309)
T 4fuu_A 188 HVQGYNARFGILLDMVGGENSVFLKEGYSEEFAPDINKKVWKAAKKAGYGK--TFIDERGDTIT-DDHLFINRLARIKTI 264 (309)
T ss_dssp SSTTCCCSEEEEECSCCBTTCCEEECHHHHHHCHHHHHHHHHHHHHTTCTT--TEEEEECCCCC-CHHHHHHHHTCCCEE
T ss_pred cccCcceEEEEeeeccCCCCCceEeecCchhhhHHHHHHHHHHHHhcCCcc--cccccCCCCCC-CChHHHHhcCCCCEE
Confidence 456789999999999999999888874432 345554433321111000 11223444444 499999988899999
Q ss_pred eEeeecCC----CccCCCCCCcCCCChhhHHHHHHHHHHHHH
Q 005696 80 DFAYTDKS----AVYHTKNDKLDLLKPGSLQHLGENMLAFLL 117 (682)
Q Consensus 80 D~A~~~n~----~~YHT~~D~~~~i~~gslQh~Gdn~L~l~~ 117 (682)
|++....+ .+|||++|++|+|++++|||+|+++|+++-
T Consensus 265 ~~~~~~~~~~~~~~yHT~~Dt~d~id~~~L~~vg~~vl~~ly 306 (309)
T 4fuu_A 265 DIIPNDPETGFPPTWHTIHDNMDHIDKNTLKAVGQTVLEVIY 306 (309)
T ss_dssp EECBC----CCCTTTTSTTCSGGGBCHHHHHHHHHHHHHHHH
T ss_pred EEeccCCCCCCCCCCCCcccchhhCCHHHHHHHHHHHHHHHh
Confidence 99876543 479999999999999999999999999874
No 4
>3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG; 1.06A {Parabacteroides distasonis}
Probab=98.66 E-value=7.9e-09 Score=109.17 Aligned_cols=108 Identities=22% Similarity=0.277 Sum_probs=77.9
Q ss_pred CCCc--ccCcEEEeecccCCCCcceeeccCC-C---HHHHHHHHHhCCCCcccchHHHHHh---cCCCCCCCcchhhhhc
Q 005696 3 HPWS--TTIRVAIDLEAMGIGGKSGLFQAGP-H---PWAVENFAAAAKYPSGQVTAQDLFA---SGAITSATDFQVYKEV 73 (682)
Q Consensus 3 H~wa--~~v~a~iNLEa~G~gGr~~lFqtg~-~---~~lv~~y~~~a~~P~a~sla~eif~---~GiipsdTDf~if~~~ 73 (682)
|++. ++++++||||..|.+++.+..+ +. . +++++.+.+.++ ..+. ...|+ .|.++ +|...|.++
T Consensus 185 ~~~~~~~~~~~~inlD~~G~~~~~~~~~-~~~~~~~~~l~~~~~~~a~-~~g~---~~~f~~~~~g~~~--sDh~~f~~~ 257 (309)
T 3tc8_A 185 NPHVPNYTAEYGILLDMVGGKNATFFKE-QQSLRAAAPIVEMVWSAAR-DLGY---GKYFINAAGGAIT--DDHQYVISG 257 (309)
T ss_dssp SCSSTTCCCSEEEEEESCCBTTCCEEEC-HHHHHHHHHHHHHHHHHHH-HHTC---TTTEEEEECCCCC--CHHHHHHHH
T ss_pred CCCccccceEEEEEecccCCCCCceeec-ccccchHHHHHHHHHHHHH-HcCC---cceeccCCCCCCC--CccHHHHhc
Confidence 4444 5899999999999999865443 22 2 346666654331 1110 11233 24444 578999987
Q ss_pred CCCceeeEeee------cCCCccCCCCCCcCCCChhhHHHHHHHHHHHHH
Q 005696 74 AGLSGLDFAYT------DKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLL 117 (682)
Q Consensus 74 g~~~GlD~A~~------~n~~~YHT~~D~~~~i~~gslQh~Gdn~L~l~~ 117 (682)
.|+|+++++.. ..+.+|||+.|++|+|++++||+.|+++++++-
T Consensus 258 ~GiP~~~li~~~~~~~~~~~~~~Ht~~Dt~d~id~~~l~~~~~~~~~~vy 307 (309)
T 3tc8_A 258 RNIPSIDIINYDPESKTGFASYWHTQKDNMENIDRETLKAAGQTVLEVIY 307 (309)
T ss_dssp HCCCEEEEEBCCTTSSSSSCTTTTSTTCSGGGBCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEecccCcccCCCCCCCCCCcCChhhCCHHHHHHHHHHHHHHHh
Confidence 89999999876 346899999999999999999999999999874
No 5
>3gux_A Putative Zn-dependent exopeptidase; aminopeptidase, phosphorylase/hydrolase-like fold, structura genomics; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=98.61 E-value=1.3e-08 Score=107.77 Aligned_cols=108 Identities=19% Similarity=0.296 Sum_probs=67.5
Q ss_pred CCCc--ccCcEEEeecccCCCCcceeeccCC-C---HHHHHHHHHhCCCCcccchHHHHHh---cCCCCCCCcchhhhhc
Q 005696 3 HPWS--TTIRVAIDLEAMGIGGKSGLFQAGP-H---PWAVENFAAAAKYPSGQVTAQDLFA---SGAITSATDFQVYKEV 73 (682)
Q Consensus 3 H~wa--~~v~a~iNLEa~G~gGr~~lFqtg~-~---~~lv~~y~~~a~~P~a~sla~eif~---~GiipsdTDf~if~~~ 73 (682)
|++. ++++++||||..|.+++.+ ++.+. . +++++.+.+.++. .+. ...|+ .|.++ +|...|.++
T Consensus 188 ~~~~~~~~~~~~inlDm~G~~~~~~-~~~g~~~~~~~~l~~~~~~~~~~-~g~---~~~f~~~~~~~~~--sDh~pF~~~ 260 (314)
T 3gux_A 188 TPHVQNYNARYGILLDMVGGKDATF-YYEGYSARTARSEMKKIWKKAHE-LGY---GKYFVKEDGGETV--DDHIYVNKL 260 (314)
T ss_dssp SCSSTTCCCSEEEEEESCCBTTCCE-EECTTHHHHCHHHHHHHHHHHHH-HTC---TTTEEEEECCCCC--CHHHHHHHH
T ss_pred CCcccccceeEEEEEeccCCCCCce-eeeccccccHHHHHHHHHHHHHH-cCC---ccccccccCCCCC--CccHHHHhc
Confidence 4444 6899999999999999874 55454 2 4677776544311 110 01222 24444 667999987
Q ss_pred CCCceeeEeeec-----C--CCccCCCCCCcCCCChhhHHHHHHHHHHHHH
Q 005696 74 AGLSGLDFAYTD-----K--SAVYHTKNDKLDLLKPGSLQHLGENMLAFLL 117 (682)
Q Consensus 74 g~~~GlD~A~~~-----n--~~~YHT~~D~~~~i~~gslQh~Gdn~L~l~~ 117 (682)
.|+|+++++... + +.+|||+.|++++|++.+||+.|+++++++-
T Consensus 261 ~GiP~l~~i~~~~~~~~~~f~~~~Ht~~Dt~d~id~~~l~~~~~~~~~~~y 311 (314)
T 3gux_A 261 ARIPCVDIINYDAGNPQSSFGSFWHTVNDTMENIDRNTLKAVGQTVMDVIY 311 (314)
T ss_dssp SCCCEEEEEBCC--------------------CBCHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEecccccccccCCCCCCCCCcCcchhCCHHHHHHHHHHHHHHHh
Confidence 789999998764 2 3789999999999999999999999999874
No 6
>4f9u_A CG32412; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, glycosylation, transferase, HY; HET: PBD NAG BMA MAN; 1.80A {Drosophila melanogaster} PDB: 4f9v_A*
Probab=98.53 E-value=2.6e-07 Score=97.09 Aligned_cols=115 Identities=15% Similarity=0.173 Sum_probs=77.0
Q ss_pred ccCcEEEeecccCCCCccee--eccCCC--HH---HHHHHHHhCCCCcccchHHHHHhcCCCCCCCcchhhhhcCCCcee
Q 005696 7 TTIRVAIDLEAMGIGGKSGL--FQAGPH--PW---AVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGL 79 (682)
Q Consensus 7 ~~v~a~iNLEa~G~gGr~~l--Fqtg~~--~~---lv~~y~~~a~~P~a~sla~eif~~GiipsdTDf~if~~~g~~~Gl 79 (682)
+++++.||+|..|..++... ++.+.. +. +.+...+....+........-...|. ..+|...|.+ .|+|++
T Consensus 181 ~~i~~~inlDmvg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~SDH~pF~~-~GIP~l 257 (312)
T 4f9u_A 181 DRIEVLVLLDLIGARNPKFSSFYENTDGLHSSLVQIEKSLRTAGQLEGNNNMFLSRVSGGL--VDDDHRPFLD-ENVPVL 257 (312)
T ss_dssp GGEEEEEEEESCCSSSCCEEECCGGGHHHHHHHHHHHHHHHHTTCSSSSCCCEEEEECSSC--CCCTTHHHHT-TTCCEE
T ss_pred cceeeeeeeeccccCCCCceEEEeccchhhhHHHHHHHHHHHhccccccccccccccCCCC--CCCchHHHHH-CCCCEE
Confidence 46889999999999888754 332211 11 12222222211111111111111122 2468999998 789999
Q ss_pred eEeeecCCCccCCCCCCcCCCChhhHHHHHHHHHHHHHHhhcCCC
Q 005696 80 DFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASSTS 124 (682)
Q Consensus 80 D~A~~~n~~~YHT~~D~~~~i~~gslQh~Gdn~L~l~~~la~~~~ 124 (682)
|++......+|||+.|++|+|++++||+.|..+++++.+......
T Consensus 258 ~~~~~~~~~~yHt~~Dt~d~id~~~l~~~~~i~~~fv~e~l~~~~ 302 (312)
T 4f9u_A 258 HLVATPFPDVWHTPRDNAANLHWPSIRNFNRVFRNFVYQYLKRHT 302 (312)
T ss_dssp EEECSSCCTTTTSTTCSGGGCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred EEECCCCCCCCCCCccChhhCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999998889999999999999999999999999998876655433
No 7
>1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A
Probab=98.53 E-value=7.4e-08 Score=99.99 Aligned_cols=111 Identities=14% Similarity=0.192 Sum_probs=80.5
Q ss_pred cccCcEEEeecccCCCCcceeeccCCCHHHHHHHHHhC---CCCcccchHHHHHhcCCCCCCCcchhhhhcCCCceeeEe
Q 005696 6 STTIRVAIDLEAMGIGGKSGLFQAGPHPWAVENFAAAA---KYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGLDFA 82 (682)
Q Consensus 6 a~~v~a~iNLEa~G~gGr~~lFqtg~~~~lv~~y~~~a---~~P~a~sla~eif~~GiipsdTDf~if~~~g~~~GlD~A 82 (682)
.++++++||+|..|.+++.+.+. +.++.+.+.+.+.+ ..|.- + ...-..+||...|.+ .|+|.++++
T Consensus 150 ~~~~~~~i~~D~~g~~~~~~~~~-~~~~~l~~~~~~~~~~~gi~~~------~--~~~~~~~sD~~~f~~-~Gip~~~~~ 219 (284)
T 1tkj_A 150 RSKLAGYLNFDMIGSPNPGYFVY-DDDPVIEKTFKNYFAGLNVPTE------I--ETEGDGRSDHAPFKN-VGVPVGGLF 219 (284)
T ss_dssp HTTEEEEEEECCCCCSSCCCEEC-CSSHHHHHHHHHHHHHHTCCCE------E--CCSSTTCSTHHHHHH-TTCCEEEEE
T ss_pred hhcEEEEEEecCCCCCCCCeEEe-cCCHHHHHHHHHHHHHcCCCcc------c--CCCCCCCCchHHHHH-CCCCEEEee
Confidence 36789999999999987766665 34666555544332 22221 0 111246799999987 899999997
Q ss_pred eec-------------------CCCccCCCCCCcCCCChhhHHHHHHHHHHHHHHhhcCCCCC
Q 005696 83 YTD-------------------KSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASSTSLP 126 (682)
Q Consensus 83 ~~~-------------------n~~~YHT~~D~~~~i~~gslQh~Gdn~L~l~~~la~~~~l~ 126 (682)
.-. ...+|||+.|++++++++.+|++++.+.++++.|+++++++
T Consensus 220 ~~~~~~~~~~~~~~~g~~~~~~~~~~yHt~~D~~~~id~~~l~~~~~~~~~~~~~la~~~~~P 282 (284)
T 1tkj_A 220 TGAGYTKSAAQAQKWGGTAGQAFDRCYHSSCDSLSNINDTALDRNSDAAAHAIWTLSSGTGEP 282 (284)
T ss_dssp CCCSSBCCHHHHHHHCSCTTSBSCTTTTSTTCSTTSCCHHHHHHHHHHHHHHHHHHHC-----
T ss_pred cCcccccccchhhccccccccCCCCCCCCCcCChhhCCHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 752 14679999999999999999999999999999999987654
No 8
>4fai_A CG5976, isoform B; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, transferase, hydrolase; HET: PBD; 1.65A {Drosophila melanogaster} PDB: 4fbe_A*
Probab=98.46 E-value=1.4e-07 Score=100.46 Aligned_cols=114 Identities=16% Similarity=0.132 Sum_probs=74.3
Q ss_pred CCcccCcEEEeecccCCCCcceeeccCCCHHHHHHHH----Hh------CCCCc---ccchHHHHHhcCCC---CCCCcc
Q 005696 4 PWSTTIRVAIDLEAMGIGGKSGLFQAGPHPWAVENFA----AA------AKYPS---GQVTAQDLFASGAI---TSATDF 67 (682)
Q Consensus 4 ~wa~~v~a~iNLEa~G~gGr~~lFqtg~~~~lv~~y~----~~------a~~P~---a~sla~eif~~Gii---psdTDf 67 (682)
.+.++|+++||||..|.+++....+..+..+..+... +. ..++. ........|+.... -..+|.
T Consensus 192 ~~~~~i~~~inlDmiG~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH 271 (330)
T 4fai_A 192 GKLDRIDMLVLLDLLGAPDPAFYSFFENTESWYMRIQSVETRLAKLQLLERYASSGVAQRDPTRYFQSQAMRSSFIEDDH 271 (330)
T ss_dssp TCSTTEEEEEEECSCSSSSCCEEECCGGGHHHHHHHHHHHHHHHHTTC---------------CCEEEEEETTCCCCSTT
T ss_pred cchhceeEEEEeccCccCCCCceeeccCcchHHHHHHHHHHHhhhhhhhhhhhccccccccccccccccCCCCCCCCCch
Confidence 3567899999999999999987765333332222111 11 01111 11111111111111 123699
Q ss_pred hhhhhcCCCceeeEeeecCCCccCCCCCCcCCCChhhHHHHHHHHHHHHHH
Q 005696 68 QVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQ 118 (682)
Q Consensus 68 ~if~~~g~~~GlD~A~~~n~~~YHT~~D~~~~i~~gslQh~Gdn~L~l~~~ 118 (682)
..|.+ .|+|+++++....+.+|||+.||+|+|+++++|+++.-+-+++.+
T Consensus 272 ~pF~~-~GIP~l~~i~~~~~~~yHT~~Dt~d~iD~~tl~~~~~ii~~Fv~E 321 (330)
T 4fai_A 272 IPFLR-RNVPILHLIPVPFPSVWHTPDDNASVIDYATTDNLALIIRLFALE 321 (330)
T ss_dssp HHHHT-TTCCEEEECCSSCCTTTTSTTSSGGGCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-CCCCEEEEECCCCCCCCCCCcCChhhCCHHHHHHHHHHHHHHHHH
Confidence 99998 789999998888888999999999999999999999877776654
No 9
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}
Probab=98.44 E-value=2.2e-07 Score=102.64 Aligned_cols=110 Identities=18% Similarity=0.164 Sum_probs=82.9
Q ss_pred ccCcEEEeecccCCCCccee--eccCC-CHHHHHHHHHhCCCCcccchHHHHHhcCCCCCCCcchhhhhcCCCceeeEee
Q 005696 7 TTIRVAIDLEAMGIGGKSGL--FQAGP-HPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGLDFAY 83 (682)
Q Consensus 7 ~~v~a~iNLEa~G~gGr~~l--Fqtg~-~~~lv~~y~~~a~~P~a~sla~eif~~GiipsdTDf~if~~~g~~~GlD~A~ 83 (682)
+++.+.||+|..| |+... ++.++ ..++++.+.+.. +|.+... +..-..+.||+..|.+ .|+|++++..
T Consensus 322 ~~~~~~~n~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~-----~~~~~~~~SD~~~f~~-~GiP~~~l~~ 392 (444)
T 3iib_A 322 EKHYIAAESDFGA--GPIYQIDWRVADTAHSPVINAMKVA-EPLGVAA-----GNNKASGGPDVSMLPA-LGVPVASLRQ 392 (444)
T ss_dssp GGEEEEEECCSTT--CCEEEEEEECCHHHHHHHHHHGGGG-GGGTCEE-----CCSCCCCCGGGTTSGG-GTCCEEEEEE
T ss_pred hceeEEEECcCCC--CcceEEEeecChhhHHHHHHHHHHH-hhcCCcc-----ccCCCCCCCccHHHHH-CCCCEEEeec
Confidence 4678889999644 44444 45433 367888887754 3433221 1234578999999998 7899999987
Q ss_pred ecCC--CccCCCCCCcCCCChhhHHHHHHHHHHHHHHhhcCCCC
Q 005696 84 TDKS--AVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASSTSL 125 (682)
Q Consensus 84 ~~n~--~~YHT~~D~~~~i~~gslQh~Gdn~L~l~~~la~~~~l 125 (682)
.... ..|||+.|+++++++++||+.++.+..++..+|++++.
T Consensus 393 ~~~~~~~~yHt~~Dt~d~id~~~l~~~~~~~~~~v~~lA~~~~~ 436 (444)
T 3iib_A 393 DGSDYFDYHHTPNDTLDKINPEALAQNVAVYAQFAWVMANSKVE 436 (444)
T ss_dssp CCTTGGGTTTSTTCCGGGSCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCcCCCCCCCCccccccCCHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 5433 47999999999999999999999999999999998874
No 10
>2afw_A Glutaminyl-peptide cyclotransferase; alpha-beta protein, metalloprotein; HET: AHN; 1.56A {Homo sapiens} SCOP: c.56.5.8 PDB: 2afo_A 2afm_A* 2afx_A* 2afz_A 3pbb_A* 2zed_A 2zeh_A 2afu_A 2zee_A 2zeo_A 2zef_A 2zem_A 2zel_A 2zen_A 3pbe_A 2zeg_A 2zep_A 2afs_A 3si0_A* 3si2_A* ...
Probab=98.35 E-value=1.3e-06 Score=92.69 Aligned_cols=101 Identities=17% Similarity=0.270 Sum_probs=71.0
Q ss_pred cccCcEEEeecccCCCCccee--eccCCCHHHHHHHHHhCCCCcccchHHHHHhcCCC-----------------CCCCc
Q 005696 6 STTIRVAIDLEAMGIGGKSGL--FQAGPHPWAVENFAAAAKYPSGQVTAQDLFASGAI-----------------TSATD 66 (682)
Q Consensus 6 a~~v~a~iNLEa~G~gGr~~l--Fqtg~~~~lv~~y~~~a~~P~a~sla~eif~~Gii-----------------psdTD 66 (682)
.++|+++||||..|.+++.++ |.++ .+ +.+..+ .+.+++.+.|++ ...+|
T Consensus 206 ~~~i~~~inlD~iG~~~~~~~~~~~~~-~~-~~~~l~---------~~~~~~~~~g~~~~~~~~~~~f~~~~~~g~~~sD 274 (329)
T 2afw_A 206 LHGMDLLVLLDLIGAPNPTFPNFFPNS-AR-WFERLQ---------AIEHELHELGLLKDHSLEGRYFQNYSYGGVIQDD 274 (329)
T ss_dssp TTTEEEEEEECSCCSSSCCBCCCCGGG-HH-HHHHHH---------HHHHHHHHTTCSSSCCSTTCSBCSCCCCSCCCST
T ss_pred ccceEEEEEeccCCCCCCceeeeccCc-ch-HHHHHH---------HHHHHHHHcCCccCCCcccccccccccCCCCCCC
Confidence 456999999999999988654 3322 22 211110 111122222221 13478
Q ss_pred chhhhhcCCCceeeEeeecCCCccCCCCCCcCCCChhhHHHHHHHHHHHHHH
Q 005696 67 FQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQ 118 (682)
Q Consensus 67 f~if~~~g~~~GlD~A~~~n~~~YHT~~D~~~~i~~gslQh~Gdn~L~l~~~ 118 (682)
...|.+ .|+|+++++.......|||++|++++++++++++.+.-+.+++.+
T Consensus 275 h~~F~~-~GiP~~~~~~~~~~~~yHt~~Dt~~~ld~~~l~~~~~~~~~~v~e 325 (329)
T 2afw_A 275 HIPFLR-RGVPVLHLIPSPFPEVWHTMDDNEENLDESTIDNLNKILQVFVLE 325 (329)
T ss_dssp THHHHT-TTCCEEEECCSSCCTTTTSTTCSSTTCCHHHHHHHHHHHHHHHHH
T ss_pred CHhHHH-CCCCEEEEEcCCCCCCCCCCCCchhhCCHHHHHHHHHHHHHHHHH
Confidence 899988 599999999888889999999999999999999999977766654
No 11
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*
Probab=98.27 E-value=7.7e-07 Score=97.38 Aligned_cols=111 Identities=17% Similarity=0.158 Sum_probs=79.9
Q ss_pred CcccCcEEEeecccCCCCc-ceeeccCC-CHHHHHHHHH----hCCCCcccchHHHHHhcCCCCCCCcchhhhhcCCCce
Q 005696 5 WSTTIRVAIDLEAMGIGGK-SGLFQAGP-HPWAVENFAA----AAKYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSG 78 (682)
Q Consensus 5 wa~~v~a~iNLEa~G~gGr-~~lFqtg~-~~~lv~~y~~----~a~~P~a~sla~eif~~GiipsdTDf~if~~~g~~~G 78 (682)
+.+++.++||+|..|+++. .+....+. .+.++..+.+ ....| . .. -..+.||+..|.+ .|+|+
T Consensus 290 ~~~~~~~~in~D~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~-------~~-~~~~~SD~~~F~~-~GIP~ 358 (421)
T 2ek8_A 290 EIKRTIGMFQLDMVGSKDAGDLIMYTIDGKKNRVTDLGAAASSRLSGV--L-------PY-GQEGRSDHESFHA-LGIPA 358 (421)
T ss_dssp HHHHEEEEEEECSCCBTTSCEEEEEETTSCCCHHHHHHHHHHHHHTSC--C-------CE-EECCSSTHHHHHT-TTCCE
T ss_pred hhhcEEEEEEecccCCCCCcceEEecCCCccccchhhHHHHHHhcCCC--C-------CC-CCCCCCccHHHHH-CCCCE
Confidence 4567899999999999887 33334332 1222222211 11112 0 01 1246899999997 89999
Q ss_pred eeEeeecCCCccCCCCCCcCCCChhhHHHHHHHHHHHHHHhhcCCCCC
Q 005696 79 LDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASSTSLP 126 (682)
Q Consensus 79 lD~A~~~n~~~YHT~~D~~~~i~~gslQh~Gdn~L~l~~~la~~~~l~ 126 (682)
+++.......+|||++|+++++++..++++++.+..++..+++++.++
T Consensus 359 ~~~~~~~~~~~yHt~~Dt~~~i~~~~l~~~~~~~~~~~~~la~~~~~p 406 (421)
T 2ek8_A 359 ALFIHAPVEPWYHTPNDTLDKISKEKLDNVADIVGSAVYQAARPGELV 406 (421)
T ss_dssp EEEEEESCCTTTTSTTCCGGGBCHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred EEEECCcCCCCCCCcccchhhCCHHHHHHHHHHHHHHHHHHhCCCccC
Confidence 987744445689999999999999999999999999999999988765
No 12
>3pb6_X Glutaminyl-peptide cyclotransferase-like protein; alpha/beta protein, alpha/beta-mixed fold, glutaminyl cyclas membrane; 1.05A {Homo sapiens} PDB: 3pb4_X 3pb7_X* 3pb8_X* 3pb9_X*
Probab=98.20 E-value=1.4e-06 Score=92.95 Aligned_cols=111 Identities=18% Similarity=0.146 Sum_probs=76.3
Q ss_pred CcccCcEEEeecccCCCCcceeeccCCCHHHHH-------HHHHh---CCCCcccchHHHHHhcCCCCCCCcchhhhhcC
Q 005696 5 WSTTIRVAIDLEAMGIGGKSGLFQAGPHPWAVE-------NFAAA---AKYPSGQVTAQDLFASGAITSATDFQVYKEVA 74 (682)
Q Consensus 5 wa~~v~a~iNLEa~G~gGr~~lFqtg~~~~lv~-------~y~~~---a~~P~a~sla~eif~~GiipsdTDf~if~~~g 74 (682)
..++|+++||||..|+.++.+.-.-+...++.+ .+++. ..||......+.-...| ...+|...|.+ .
T Consensus 206 ~~~~i~~~inlDmiG~~~~~~~~~~~~t~~~~~~l~~i~~~~~~~g~~~~~p~~~~~f~~~~~~~--~~~SDH~pF~~-~ 282 (330)
T 3pb6_X 206 RIQAIELFMLLDLLGAPNPTFYSHFPRTVRWFHRLRSIEKRLHRLNLLQSHPQEVMYFQPGEPFG--SVEDDHIPFLR-R 282 (330)
T ss_dssp TTTTEEEEEEEESCSSSSCCBCCCCGGGHHHHHHHHHHHHHHHHTTCCSSCCSSCSSBCSSCSSC--CCSCTTHHHHT-T
T ss_pred hhhCeEEEEeccCCCCCCCCceeecCcchHHHHHHHHHHHHHHHcCccccCCcccccccccccCC--CCCCchHhHHH-C
Confidence 567899999999999999875322111233322 22221 12332111100001223 34578999999 8
Q ss_pred CCceeeEeeecCCCccCCCCCCcCCCChhhHHHHHHHHHHHHHH
Q 005696 75 GLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQ 118 (682)
Q Consensus 75 ~~~GlD~A~~~n~~~YHT~~D~~~~i~~gslQh~Gdn~L~l~~~ 118 (682)
|+|++++.-......|||+.|++|+|+..++|+.+.-+.+++.+
T Consensus 283 GIP~~~~~~~~f~~~yHt~~Dt~d~id~~~l~~~~~i~~~fv~E 326 (330)
T 3pb6_X 283 GVPVLHLISTPFPAVWHTPADTEVNLHPPTVHNLCRILAVFLAE 326 (330)
T ss_dssp TCCEEEEECSSCCTTTTSTTCSGGGSCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCCCCCCcCchhhCCHHHHHHHHHHHHHHHHH
Confidence 99999998777778999999999999999999999999988765
No 13
>1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ...
Probab=97.86 E-value=3.3e-05 Score=80.52 Aligned_cols=111 Identities=17% Similarity=0.187 Sum_probs=76.1
Q ss_pred ccCcEEEeecccCCCC--cceeeccCC-CHHHHH----HHHHhCC-CCcccchHHHHHhcCCCCCCCcchhhhhcCCCce
Q 005696 7 TTIRVAIDLEAMGIGG--KSGLFQAGP-HPWAVE----NFAAAAK-YPSGQVTAQDLFASGAITSATDFQVYKEVAGLSG 78 (682)
Q Consensus 7 ~~v~a~iNLEa~G~gG--r~~lFqtg~-~~~lv~----~y~~~a~-~P~a~sla~eif~~GiipsdTDf~if~~~g~~~G 78 (682)
+++.++||+|..|..| +.+.|.+.. ++.+.+ ..++..+ -|+. ++.. -...||...|.+ .|+|+
T Consensus 170 ~~~~~~i~~D~~g~~g~~~~i~~~~~~~~~~l~~~l~~~a~~~~~~i~~~-------~~~~-~~~~sD~~~f~~-~GiP~ 240 (299)
T 1rtq_A 170 KNVVSALQLDMTNYKGSAQDVVFITDYTDSNFTQYLTQLMDEYLPSLTYG-------FDTC-GYACSDHASWHN-AGYPA 240 (299)
T ss_dssp CEEEEEEECSCCSCCCSSSSEEEECTTSCHHHHHHHHHHHHHHCTTCCEE-------EECC-SSCCSTHHHHHH-TTCCE
T ss_pred ccEEEEEEecCCCCCCCCcceEEEeCCCCchHHHHHHHHHHHhCccCCcc-------cCCC-CCCCCcHHHHHH-CCCCE
Confidence 5678999999998754 456666433 554432 2232211 1211 1111 126799999988 88999
Q ss_pred eeEee---ecCCCccCCCCCCcCCCCh--hhHHHHHHHHHHHHHHhhcCCCCC
Q 005696 79 LDFAY---TDKSAVYHTKNDKLDLLKP--GSLQHLGENMLAFLLQAASSTSLP 126 (682)
Q Consensus 79 lD~A~---~~n~~~YHT~~D~~~~i~~--gslQh~Gdn~L~l~~~la~~~~l~ 126 (682)
+.+.. .....+|||+.|+++++++ ..+|++++.+.+++++|++++.+.
T Consensus 241 ~~~~~~~~~~~~~~yHt~~Dt~~~~d~~~~~~~~~~~l~~~~~~~La~~~~~~ 293 (299)
T 1rtq_A 241 AMPFESKFNDYNPRIHTTQDTLANSDPTGSHAKKFTQLGLAYAIEMGSATGDT 293 (299)
T ss_dssp ECEESSCGGGSCTTTTSTTCCGGGSCTTCHHHHHHHHHHHHHHHHHHHCCC--
T ss_pred EEecccccccCCCCCCCccccccccCccHHHHHHHHHHHHHHHHHHhCCCcCC
Confidence 87532 2234689999999999999 478999999999999999988753
No 14
>3k9t_A Putative peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, aminop hydrolase; 2.37A {Clostridium acetobutylicum}
Probab=97.44 E-value=7.7e-05 Score=81.40 Aligned_cols=108 Identities=13% Similarity=0.143 Sum_probs=75.3
Q ss_pred cccCcEEEeecccCCCCcceeeccCC-CHHHHHHHHH-hCC---CCcccchHHHHHhcCCCCCCCcchhhhhcCC--Cce
Q 005696 6 STTIRVAIDLEAMGIGGKSGLFQAGP-HPWAVENFAA-AAK---YPSGQVTAQDLFASGAITSATDFQVYKEVAG--LSG 78 (682)
Q Consensus 6 a~~v~a~iNLEa~G~gGr~~lFqtg~-~~~lv~~y~~-~a~---~P~a~sla~eif~~GiipsdTDf~if~~~g~--~~G 78 (682)
-++|++.+|||..|.+|.-. +..++ ++++++...+ +.+ -++... ..-|...|=++|.+ .| ||.
T Consensus 242 l~~i~a~lnLDmVGd~~~~~-y~~sr~g~~~~d~~~~~vl~~~~~~~~~~--------~f~~~GSDh~qF~s-pG~dIPv 311 (435)
T 3k9t_A 242 LKNIKMGLVATCVGDAGIKN-YKRTKFGDAEIDKIVEKVLMHCGSEYYVA--------DFFPWGSDERQFSS-PGINLSV 311 (435)
T ss_dssp GGGEEEEEECCSCCSSSCEE-EECCTTSSSHHHHHHHHHHHHSSSCEEEE--------CCCSCSSTHHHHTS-TTTCCCE
T ss_pred hhceEEEEEEEEecCCCCce-eecCCCCChHHHHHHHHHHhhcCCCCcee--------cCCCCCCcchhHhh-CCCCCCE
Confidence 35899999999999998544 44444 3334332222 211 111110 12356689999998 55 888
Q ss_pred eeEeeecCC-CccCCCCCCcCCCChhhHHHHHHHHHHHHHHhhcCC
Q 005696 79 LDFAYTDKS-AVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASST 123 (682)
Q Consensus 79 lD~A~~~n~-~~YHT~~D~~~~i~~gslQh~Gdn~L~l~~~la~~~ 123 (682)
..+.-...+ -.|||+.|+++.|++++||...+-++..+..|-+..
T Consensus 312 ~~~~r~~~~~peYHTs~Dtld~ISpe~L~~s~~iv~~~i~~Le~n~ 357 (435)
T 3k9t_A 312 GSLMRSCYGFDGYHTSADNLCYMNKDGLADSYKTYLEVIYTIENNR 357 (435)
T ss_dssp EEEESSCTTCTTTTBTTSSGGGCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred EEEecCCCCCcccCCCcCChhhCCHHHHHHHHHHHHHHHHHhhccc
Confidence 877654333 369999999999999999999999999999887653
No 15
>2wyr_A Cobalt-activated peptidase TET1; hydrolase, large SELF-assembled dodecamer, hyperthermophilic; 2.24A {Pyrococcus horikoshii} PDB: 2cf4_A
Probab=64.88 E-value=7 Score=40.42 Aligned_cols=96 Identities=14% Similarity=0.090 Sum_probs=62.8
Q ss_pred cCcEEEeecccCCC-----------Ccceee---ccCCCHHHHHHHHHhCC---CCcccchHHHHHhcCCCCCCCcchhh
Q 005696 8 TIRVAIDLEAMGIG-----------GKSGLF---QAGPHPWAVENFAAAAK---YPSGQVTAQDLFASGAITSATDFQVY 70 (682)
Q Consensus 8 ~v~a~iNLEa~G~g-----------Gr~~lF---qtg~~~~lv~~y~~~a~---~P~a~sla~eif~~GiipsdTDf~if 70 (682)
..+++||+|..+.+ |..+-+ .+..++.+++..+++++ .|. |....+..||-..|
T Consensus 220 ~~~~~i~~d~~~~~~~p~~~~~lg~G~~i~~~d~~~~~~~~l~~~l~~~~~~~gi~~---------~~~~~~ggtDa~~~ 290 (332)
T 2wyr_A 220 YPQYAFAIDSFACCSPLTGDVKLGKGPVIRAVDNSAIYSRDLARKVWSIAEKNGIEI---------QIGVTGGGTDASAF 290 (332)
T ss_dssp CCSEEEEECCEECCSGGGTTCCTTSCCEEEEECSSCBCCHHHHHHHHHHHHHTTCCC---------EEEECSSCCGGGGG
T ss_pred CCCEEEEEecccccCCCCCceeeCCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCCe---------EEecCCCCchHHHH
Confidence 35789999998764 333322 11236667666654431 221 11224688999999
Q ss_pred hhcCCCceeeEeeecCCCccCCCCCCcCCCChhhHHHHHHHHHHHHHHh
Q 005696 71 KEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQA 119 (682)
Q Consensus 71 ~~~g~~~GlD~A~~~n~~~YHT~~D~~~~i~~gslQh~Gdn~L~l~~~l 119 (682)
.. |+|.+++..- ...+||+. |+++...+++..+-+.++++.+
T Consensus 291 ~~--GiPtv~lg~~--~~~~Hs~~---E~v~~~dl~~~~~ll~~~~~~l 332 (332)
T 2wyr_A 291 QD--RSKTLALSVP--IKYLHSEV---ETLHLNDLEKLVKLIEALAFEL 332 (332)
T ss_dssp TT--TSEEEEEECE--EBSCSSTT---CEEEHHHHHHHHHHHHHHHHHC
T ss_pred Hc--CCCEEEEcCC--cCCCCChh---hcccHHHHHHHHHHHHHHHHhC
Confidence 87 8999987643 23589975 6677899999888888777653
No 16
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=40.24 E-value=42 Score=26.28 Aligned_cols=35 Identities=23% Similarity=0.523 Sum_probs=16.3
Q ss_pred CCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 005696 378 GGTPEWLGNVILAVFIAVVLCLTLVYLLSYVHLSGAK 414 (682)
Q Consensus 378 ~~~Pd~~~d~iIA~l~a~~~~l~~~fl~Pli~~~~~~ 414 (682)
...|-|+ +++|++.++..+....+++=-+-.|+|+
T Consensus 5 ~~vp~Wi--Ii~svl~GLLLL~Lii~~LwK~GFFKR~ 39 (54)
T 2l8s_A 5 GRVPLWV--ILLSAFAGLLLLMLLILALWKIGFFKRP 39 (54)
T ss_dssp CCCCTHH--HHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred ccCchHH--HHHHHHHHHHHHHHHHHHHHHcCcccCC
Confidence 3467775 5555554444433333333334445443
No 17
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=37.12 E-value=31 Score=23.32 Aligned_cols=18 Identities=17% Similarity=0.368 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005696 387 VILAVFIAVVLCLTLVYL 404 (682)
Q Consensus 387 ~iIA~l~a~~~~l~~~fl 404 (682)
-+||.++|+.+++.+||-
T Consensus 7 eviaglvalltflafgfw 24 (32)
T 2lx0_A 7 EVIAGLVALLTFLAFGFW 24 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 589999999999999984
No 18
>3t68_A Succinyl-diaminopimelate desuccinylase; DAPE, csgid, metalloenzyme, structural genomics; 1.65A {Vibrio cholerae o1 biovar el tor} PDB: 3t6m_A
Probab=30.79 E-value=22 Score=35.53 Aligned_cols=54 Identities=13% Similarity=0.172 Sum_probs=42.8
Q ss_pred CCCCcchhhhhcCCCceeeEeeecCCCccCCCCCCcCCCChhhHHHHHHHHHHHHHHhhc
Q 005696 62 TSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAAS 121 (682)
Q Consensus 62 psdTDf~if~~~g~~~GlD~A~~~n~~~YHT~~D~~~~i~~gslQh~Gdn~L~l~~~la~ 121 (682)
...||++.|.+ .++|.+.+..-.+ .+||+.+ .++...+++.-+-+.++++.|.+
T Consensus 215 gggtD~~~~~~-~g~p~~~~~~~~~--~~Hs~~E---~v~~~d~~~~~~vl~~~l~~l~~ 268 (268)
T 3t68_A 215 GGTSDGRFIAQ-MGAQVVELGPVNA--TIHKVNE---CVRIADLEKLTDMYQKTLNHLLG 268 (268)
T ss_dssp CCCHHHHHHHH-HTCEEEECCSBCT--TTTSTTC---EEEHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccHHHHHHh-cCCCEEEEeeCCC--CCCCccc---cccHHHHHHHHHHHHHHHHHHhC
Confidence 35899999997 6789988866443 3499985 66799999999999888888753
No 19
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=20.79 E-value=1.6e+02 Score=22.97 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=15.2
Q ss_pred CCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 005696 379 GTPEWLGNVILAVFIAVVLCLTLVYLLSYVHLSGAK 414 (682)
Q Consensus 379 ~~Pd~~~d~iIA~l~a~~~~l~~~fl~Pli~~~~~~ 414 (682)
..|=|+ +++|++.++..+..+.+++=-+-.|+|+
T Consensus 9 ~vp~wi--Ii~svl~GLllL~li~~~LwK~GFFkR~ 42 (54)
T 2knc_A 9 AIPIWW--VLVGVLGGLLLLTILVLAMWKVGFFKRN 42 (54)
T ss_dssp TCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred CcchHH--HHHHHHHHHHHHHHHHHHHHHcCcccCC
Confidence 367664 4555444444433333333333444443
Done!