Query 005697
Match_columns 682
No_of_seqs 263 out of 691
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 12:23:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005697.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005697hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1991 Nuclear transport rece 100.0 3E-100 7E-105 859.3 44.4 534 13-661 247-828 (1010)
2 COG5656 SXM1 Importin, protein 100.0 3.8E-85 8.2E-90 714.6 44.2 538 13-659 246-827 (970)
3 KOG1992 Nuclear export recepto 100.0 2E-40 4.3E-45 368.0 40.1 487 13-626 253-784 (960)
4 PF08506 Cse1: Cse1; InterPro 100.0 1E-42 2.2E-47 376.3 19.9 257 12-320 101-370 (370)
5 KOG2274 Predicted importin 9 [ 100.0 4.4E-31 9.5E-36 296.5 37.1 534 7-632 231-807 (1005)
6 KOG1993 Nuclear transport rece 99.8 1.5E-18 3.3E-23 193.6 32.1 524 27-663 269-846 (978)
7 KOG2171 Karyopherin (importin) 99.7 6.5E-16 1.4E-20 180.0 25.1 321 22-414 221-552 (1075)
8 KOG2023 Nuclear transport rece 99.7 8.5E-16 1.8E-20 169.1 19.8 307 44-414 252-594 (885)
9 COG5657 CSE1 CAS/CSE protein i 99.6 1.5E-13 3.2E-18 156.8 30.8 342 18-413 252-611 (947)
10 PF03378 CAS_CSE1: CAS/CSE pro 99.6 7.8E-15 1.7E-19 162.5 17.1 260 326-659 17-297 (435)
11 KOG1241 Karyopherin (importin) 99.0 2.2E-06 4.7E-11 97.4 35.8 344 18-480 228-607 (859)
12 KOG2171 Karyopherin (importin) 98.9 7.1E-07 1.5E-11 105.6 28.9 349 23-453 175-559 (1075)
13 COG5215 KAP95 Karyopherin (imp 98.8 2.1E-05 4.4E-10 87.1 35.2 273 21-372 235-538 (858)
14 KOG2022 Nuclear transport rece 98.4 0.0029 6.3E-08 73.8 39.2 333 20-414 290-673 (982)
15 KOG2023 Nuclear transport rece 98.4 5.9E-05 1.3E-09 84.9 22.7 210 221-453 368-601 (885)
16 KOG1991 Nuclear transport rece 97.9 0.0056 1.2E-07 72.3 26.2 72 465-537 694-767 (1010)
17 KOG1241 Karyopherin (importin) 97.8 0.02 4.4E-07 66.1 27.9 181 225-414 423-629 (859)
18 KOG1824 TATA-binding protein-i 97.1 0.32 7E-06 57.8 27.1 145 231-384 153-307 (1233)
19 COG5215 KAP95 Karyopherin (imp 97.1 0.84 1.8E-05 51.8 33.7 180 225-414 425-630 (858)
20 KOG1824 TATA-binding protein-i 97.0 0.73 1.6E-05 55.0 29.5 159 221-387 492-663 (1233)
21 KOG1242 Protein containing ada 97.0 0.19 4.1E-06 57.3 24.4 172 221-416 267-449 (569)
22 PF08167 RIX1: rRNA processing 96.5 0.038 8.3E-07 53.8 12.1 127 249-383 24-163 (165)
23 PF13513 HEAT_EZ: HEAT-like re 96.4 0.0036 7.8E-08 49.0 3.6 52 266-323 1-55 (55)
24 PF12348 CLASP_N: CLASP N term 96.3 0.089 1.9E-06 53.4 14.0 180 219-415 18-210 (228)
25 PF12719 Cnd3: Nuclear condens 96.1 0.44 9.5E-06 50.8 18.8 71 246-325 23-93 (298)
26 PF10508 Proteasom_PSMB: Prote 96.0 1.6 3.4E-05 50.2 24.2 74 246-327 34-108 (503)
27 PF12755 Vac14_Fab1_bd: Vacuol 96.0 0.024 5.3E-07 50.2 7.2 73 269-347 3-80 (97)
28 PF01602 Adaptin_N: Adaptin N 95.9 0.12 2.5E-06 59.2 14.5 123 221-364 55-179 (526)
29 KOG2081 Nuclear transport regu 95.7 0.19 4.1E-06 56.7 14.2 233 72-379 306-553 (559)
30 PF12755 Vac14_Fab1_bd: Vacuol 95.6 0.055 1.2E-06 48.0 7.9 85 225-318 3-90 (97)
31 PF10508 Proteasom_PSMB: Prote 95.6 4.5 9.7E-05 46.6 25.6 144 249-411 76-231 (503)
32 PF12717 Cnd1: non-SMC mitotic 95.3 0.14 3.1E-06 50.3 10.5 74 265-346 1-74 (178)
33 KOG0213 Splicing factor 3b, su 95.2 7.8 0.00017 45.6 24.9 112 290-414 716-831 (1172)
34 KOG0915 Uncharacterized conser 95.2 1.4 3.1E-05 55.0 20.2 111 219-342 968-1088(1702)
35 KOG1059 Vesicle coat complex A 95.1 4.3 9.4E-05 47.5 22.6 152 231-411 129-283 (877)
36 KOG1058 Vesicle coat complex C 95.1 1.3 2.9E-05 51.7 18.4 182 284-503 237-427 (948)
37 KOG1248 Uncharacterized conser 95.1 1.8 4E-05 52.9 20.4 156 221-386 754-922 (1176)
38 cd00020 ARM Armadillo/beta-cat 95.0 0.068 1.5E-06 47.5 6.7 97 221-325 20-120 (120)
39 PTZ00429 beta-adaptin; Provisi 94.9 0.55 1.2E-05 56.3 15.5 123 221-364 81-206 (746)
40 PF12717 Cnd1: non-SMC mitotic 94.7 0.74 1.6E-05 45.2 13.7 142 232-387 9-158 (178)
41 PF01602 Adaptin_N: Adaptin N 94.1 0.39 8.4E-06 54.9 11.7 87 221-323 92-179 (526)
42 KOG1062 Vesicle coat complex A 93.6 18 0.0004 43.0 23.6 69 247-326 104-172 (866)
43 PF10363 DUF2435: Protein of u 93.6 0.49 1.1E-05 41.5 8.8 75 290-371 3-80 (92)
44 KOG2021 Nuclear mRNA export fa 93.6 15 0.00034 43.3 22.7 118 219-344 451-585 (980)
45 KOG1058 Vesicle coat complex C 93.4 3.3 7.1E-05 48.6 17.0 81 251-342 100-181 (948)
46 PF13513 HEAT_EZ: HEAT-like re 93.2 0.076 1.6E-06 41.4 2.8 54 222-278 1-54 (55)
47 COG5096 Vesicle coat complex, 93.1 0.52 1.1E-05 55.9 10.6 116 249-380 91-209 (757)
48 KOG2021 Nuclear mRNA export fa 93.1 14 0.00031 43.6 21.4 79 311-391 712-792 (980)
49 PF02985 HEAT: HEAT repeat; I 92.7 0.14 3.1E-06 35.2 3.2 30 291-326 1-30 (31)
50 PTZ00429 beta-adaptin; Provisi 92.0 14 0.00031 44.4 20.9 90 221-326 118-209 (746)
51 PF13646 HEAT_2: HEAT repeats; 92.0 0.6 1.3E-05 39.5 7.1 76 221-321 13-88 (88)
52 KOG1242 Protein containing ada 91.7 11 0.00023 43.5 18.3 151 220-379 187-341 (569)
53 KOG0166 Karyopherin (importin) 91.6 0.33 7.2E-06 54.9 6.3 95 225-326 296-394 (514)
54 PF13646 HEAT_2: HEAT repeats; 91.5 0.69 1.5E-05 39.1 6.9 63 263-346 11-73 (88)
55 PF12460 MMS19_C: RNAPII trans 91.0 6.1 0.00013 44.2 15.7 151 222-382 244-413 (415)
56 KOG2274 Predicted importin 9 [ 91.0 44 0.00095 40.5 30.3 193 273-508 431-629 (1005)
57 cd00020 ARM Armadillo/beta-cat 90.8 0.56 1.2E-05 41.5 5.9 66 254-327 11-80 (120)
58 KOG1943 Beta-tubulin folding c 89.9 27 0.00059 42.9 20.1 93 227-325 399-500 (1133)
59 PRK09687 putative lyase; Provi 89.4 2.5 5.5E-05 44.8 10.3 79 221-323 141-219 (280)
60 KOG0212 Uncharacterized conser 89.3 26 0.00057 40.2 18.3 53 287-346 81-135 (675)
61 PF12348 CLASP_N: CLASP N term 89.0 4.3 9.3E-05 41.0 11.4 92 222-326 108-207 (228)
62 PRK09687 putative lyase; Provi 88.3 8 0.00017 41.0 13.2 119 221-367 104-222 (280)
63 KOG0213 Splicing factor 3b, su 87.6 37 0.00081 40.3 18.4 251 232-526 782-1039(1172)
64 PF05918 API5: Apoptosis inhib 87.6 5.9 0.00013 45.8 12.3 93 266-367 36-129 (556)
65 PF14500 MMS19_N: Dos2-interac 87.1 17 0.00038 38.1 14.7 143 256-414 5-156 (262)
66 PF10274 ParcG: Parkin co-regu 87.0 5.2 0.00011 39.6 10.0 90 288-383 36-132 (183)
67 KOG1060 Vesicle coat complex A 86.4 5.6 0.00012 47.0 11.2 131 258-412 116-247 (968)
68 KOG1059 Vesicle coat complex A 86.3 80 0.0017 37.5 30.1 85 201-303 300-384 (877)
69 PF08064 UME: UME (NUC010) dom 84.8 6.2 0.00014 35.5 8.7 78 328-414 4-86 (107)
70 KOG0915 Uncharacterized conser 84.6 68 0.0015 41.1 19.6 165 201-384 999-1181(1702)
71 KOG1993 Nuclear transport rece 84.4 65 0.0014 38.7 18.4 113 225-345 589-709 (978)
72 smart00802 UME Domain in UVSB 81.2 12 0.00026 33.8 9.0 78 328-414 4-86 (107)
73 PF08506 Cse1: Cse1; InterPro 81.2 18 0.00038 40.0 12.2 185 354-613 116-315 (370)
74 PF04078 Rcd1: Cell differenti 80.9 31 0.00068 36.1 13.0 169 201-391 44-220 (262)
75 KOG2025 Chromosome condensatio 79.6 11 0.00024 44.3 10.0 71 246-325 82-155 (892)
76 COG5181 HSH155 U2 snRNP splice 78.8 60 0.0013 37.9 15.2 135 224-371 781-916 (975)
77 COG5181 HSH155 U2 snRNP splice 78.5 1.1E+02 0.0024 35.8 17.2 257 249-559 603-866 (975)
78 PF08064 UME: UME (NUC010) dom 76.6 14 0.00029 33.3 7.9 74 309-383 28-104 (107)
79 PF04826 Arm_2: Armadillo-like 75.8 74 0.0016 33.3 14.3 109 221-337 26-140 (254)
80 PF12719 Cnd3: Nuclear condens 75.8 92 0.002 33.1 15.5 156 221-390 40-208 (298)
81 PF12460 MMS19_C: RNAPII trans 75.8 1.4E+02 0.003 33.4 25.1 151 222-384 204-374 (415)
82 PF04826 Arm_2: Armadillo-like 75.5 12 0.00025 39.2 8.2 80 256-342 18-104 (254)
83 COG5218 YCG1 Chromosome conden 75.2 12 0.00026 43.1 8.5 72 246-326 88-162 (885)
84 KOG0166 Karyopherin (importin) 74.6 9.5 0.00021 43.6 7.7 97 221-326 165-267 (514)
85 PF10363 DUF2435: Protein of u 74.4 14 0.0003 32.4 7.1 64 254-325 7-72 (92)
86 smart00802 UME Domain in UVSB 74.3 18 0.0004 32.6 8.1 87 289-378 10-99 (107)
87 KOG0211 Protein phosphatase 2A 73.7 85 0.0018 38.0 15.7 131 146-325 531-664 (759)
88 KOG1248 Uncharacterized conser 73.5 2.5E+02 0.0055 35.3 20.6 66 254-326 657-727 (1176)
89 PLN03200 cellulose synthase-in 73.4 47 0.001 44.3 14.3 96 222-326 460-560 (2102)
90 KOG2956 CLIP-associating prote 72.3 63 0.0014 36.5 13.0 154 221-386 343-504 (516)
91 PF13251 DUF4042: Domain of un 72.2 31 0.00066 34.3 9.8 100 298-411 48-174 (182)
92 PLN03200 cellulose synthase-in 72.2 1E+02 0.0022 41.3 16.9 134 263-412 620-765 (2102)
93 KOG3036 Protein involved in ce 72.0 1.3E+02 0.0029 31.4 14.7 169 201-391 73-249 (293)
94 KOG2160 Armadillo/beta-catenin 71.9 77 0.0017 34.5 13.4 99 219-326 94-197 (342)
95 KOG1240 Protein kinase contain 71.7 45 0.00097 41.7 12.6 73 264-342 435-517 (1431)
96 COG5240 SEC21 Vesicle coat com 71.2 1E+02 0.0022 35.8 14.5 90 225-325 465-555 (898)
97 PF03378 CAS_CSE1: CAS/CSE pro 71.2 1.9E+02 0.0041 32.8 20.3 153 287-448 23-190 (435)
98 PF10521 DUF2454: Protein of u 68.6 92 0.002 32.9 13.3 134 244-383 110-273 (282)
99 KOG0414 Chromosome condensatio 68.4 1.8E+02 0.0039 36.6 16.7 117 220-344 324-452 (1251)
100 COG5240 SEC21 Vesicle coat com 68.1 2.4E+02 0.0053 32.9 33.1 254 225-559 241-497 (898)
101 PRK13800 putative oxidoreducta 67.7 25 0.00055 43.5 10.0 78 221-323 788-865 (897)
102 KOG0212 Uncharacterized conser 66.1 61 0.0013 37.4 11.5 146 254-413 254-408 (675)
103 KOG4653 Uncharacterized conser 60.9 3.9E+02 0.0085 32.7 17.5 94 221-326 823-919 (982)
104 KOG0414 Chromosome condensatio 59.6 4.5E+02 0.0097 33.4 17.8 104 221-337 936-1041(1251)
105 KOG1061 Vesicle coat complex A 56.5 39 0.00084 40.2 8.2 69 247-326 83-151 (734)
106 COG5064 SRP1 Karyopherin (impo 56.1 9.7 0.00021 41.0 3.0 68 255-331 332-404 (526)
107 PF08161 NUC173: NUC173 domain 55.6 2.3E+02 0.005 28.4 13.3 135 226-390 18-157 (198)
108 PF10274 ParcG: Parkin co-regu 53.1 1.3E+02 0.0028 30.0 10.1 54 328-384 35-89 (183)
109 KOG4653 Uncharacterized conser 53.1 2.2E+02 0.0047 34.7 13.5 124 254-392 731-860 (982)
110 PF02985 HEAT: HEAT repeat; I 52.3 15 0.00033 24.9 2.6 28 253-282 3-30 (31)
111 KOG1077 Vesicle coat complex A 51.6 2.7E+02 0.0059 33.3 13.6 157 232-399 93-260 (938)
112 PF14500 MMS19_N: Dos2-interac 50.1 78 0.0017 33.2 8.7 79 21-112 96-174 (262)
113 PF05004 IFRD: Interferon-rela 50.0 3.6E+02 0.0077 29.0 20.1 98 221-325 144-257 (309)
114 PF08767 CRM1_C: CRM1 C termin 49.6 3.7E+02 0.0079 29.0 15.4 62 351-412 89-150 (319)
115 PF00514 Arm: Armadillo/beta-c 48.8 23 0.0005 25.5 3.2 28 291-324 13-40 (41)
116 COG5209 RCD1 Uncharacterized p 48.2 1.3E+02 0.0029 30.9 9.4 169 201-391 94-270 (315)
117 PF08167 RIX1: rRNA processing 48.2 1.7E+02 0.0037 28.2 10.2 95 284-384 19-125 (165)
118 COG5096 Vesicle coat complex, 47.4 1.3E+02 0.0028 36.4 10.7 89 221-325 105-195 (757)
119 KOG2213 Apoptosis inhibitor 5/ 47.2 53 0.0011 36.3 6.9 47 289-342 60-106 (460)
120 PRK13800 putative oxidoreducta 46.1 32 0.00068 42.6 5.8 56 255-325 626-681 (897)
121 PF03542 Tuberin: Tuberin; In 45.9 67 0.0015 35.3 7.6 77 23-111 251-329 (356)
122 KOG4524 Uncharacterized conser 45.8 6.9E+02 0.015 31.1 21.3 110 272-389 568-688 (1014)
123 KOG2549 Transcription initiati 45.7 1.2E+02 0.0026 35.0 9.6 130 42-238 237-371 (576)
124 KOG1992 Nuclear export recepto 45.1 6.7E+02 0.014 30.7 25.7 53 263-325 16-68 (960)
125 KOG1517 Guanine nucleotide bin 43.9 2.4E+02 0.0051 35.3 12.0 98 222-326 571-672 (1387)
126 cd08050 TAF6 TATA Binding Prot 42.9 1.8E+02 0.0039 31.7 10.5 128 253-393 181-323 (343)
127 PF08389 Xpo1: Exportin 1-like 42.7 73 0.0016 29.2 6.5 57 310-367 2-58 (148)
128 KOG1060 Vesicle coat complex A 42.7 1.3E+02 0.0028 36.3 9.4 97 221-333 121-219 (968)
129 KOG0168 Putative ubiquitin fus 42.5 7.4E+02 0.016 30.5 18.2 130 287-447 208-346 (1051)
130 KOG1967 DNA repair/transcripti 42.5 3.4E+02 0.0074 33.4 13.0 124 258-394 51-184 (1030)
131 PF12397 U3snoRNP10: U3 small 40.0 2.8E+02 0.0061 25.0 10.1 57 263-327 18-76 (121)
132 PF07571 DUF1546: Protein of u 38.6 73 0.0016 27.8 5.3 60 18-84 17-76 (92)
133 KOG1020 Sister chromatid cohes 37.1 1.1E+03 0.024 31.0 24.1 358 22-500 574-960 (1692)
134 KOG2259 Uncharacterized conser 36.7 76 0.0017 37.3 6.4 91 221-325 211-310 (823)
135 PF03224 V-ATPase_H_N: V-ATPas 33.0 2.9E+02 0.0063 29.5 10.0 117 263-386 116-250 (312)
136 KOG2137 Protein kinase [Signal 32.9 2.1E+02 0.0046 34.1 9.3 72 249-326 384-459 (700)
137 KOG1062 Vesicle coat complex A 32.4 1E+03 0.022 29.1 24.4 99 252-365 352-453 (866)
138 cd08050 TAF6 TATA Binding Prot 32.1 7E+02 0.015 27.2 14.0 117 287-414 175-300 (343)
139 KOG2933 Uncharacterized conser 32.0 2.5E+02 0.0054 30.3 8.8 112 289-413 87-201 (334)
140 PF11865 DUF3385: Domain of un 32.0 1.9E+02 0.0042 27.8 7.7 68 337-411 88-157 (160)
141 KOG1061 Vesicle coat complex A 31.9 3E+02 0.0065 33.1 10.3 110 220-344 98-211 (734)
142 PF07571 DUF1546: Protein of u 31.4 1.3E+02 0.0028 26.2 5.8 56 264-323 18-76 (92)
143 PF12054 DUF3535: Domain of un 29.2 8.8E+02 0.019 27.5 18.0 71 269-345 104-178 (441)
144 KOG2549 Transcription initiati 28.5 4.9E+02 0.011 30.3 10.9 133 249-394 206-354 (576)
145 smart00185 ARM Armadillo/beta- 27.8 61 0.0013 22.6 2.6 28 291-324 13-40 (41)
146 KOG1949 Uncharacterized conser 27.7 1.2E+03 0.025 28.4 19.0 274 248-614 128-429 (1005)
147 COG5064 SRP1 Karyopherin (impo 26.4 1.2E+02 0.0027 33.0 5.5 92 223-326 172-273 (526)
148 smart00638 LPD_N Lipoprotein N 26.4 1.1E+03 0.023 27.4 18.1 51 263-321 491-541 (574)
149 KOG2032 Uncharacterized conser 26.3 1E+03 0.023 27.4 13.0 75 263-342 269-349 (533)
150 KOG1240 Protein kinase contain 26.1 3.5E+02 0.0075 34.5 9.7 112 222-344 592-705 (1431)
151 PF08623 TIP120: TATA-binding 26.1 3.5E+02 0.0075 26.6 8.2 79 310-389 41-120 (169)
152 TIGR02270 conserved hypothetic 25.9 90 0.0019 35.0 4.7 76 221-323 130-205 (410)
153 PF10521 DUF2454: Protein of u 25.9 7.9E+02 0.017 25.8 16.5 100 221-326 15-149 (282)
154 KOG1943 Beta-tubulin folding c 25.8 1.4E+03 0.031 28.8 24.0 77 286-371 337-414 (1133)
155 PF14225 MOR2-PAG1_C: Cell mor 25.8 7.9E+02 0.017 25.8 12.2 109 244-366 148-257 (262)
156 KOG2259 Uncharacterized conser 25.1 5.7E+02 0.012 30.5 10.7 57 268-331 389-445 (823)
157 KOG4535 HEAT and armadillo rep 24.9 3.3E+02 0.0071 31.2 8.6 131 218-356 494-633 (728)
158 COG5098 Chromosome condensatio 24.8 4.1E+02 0.009 31.9 9.6 95 221-325 312-415 (1128)
159 COG1413 FOG: HEAT repeat [Ener 24.5 4.3E+02 0.0092 28.1 9.6 47 263-322 54-100 (335)
160 KOG2032 Uncharacterized conser 23.9 1.2E+03 0.025 27.0 13.4 93 285-384 253-351 (533)
161 KOG1967 DNA repair/transcripti 23.7 1.7E+02 0.0037 35.9 6.5 87 287-381 906-1001(1030)
162 PF12074 DUF3554: Domain of un 23.7 1.6E+02 0.0035 31.7 6.2 106 21-133 220-339 (339)
163 PF14911 MMS22L_C: S-phase gen 22.6 1.1E+03 0.023 26.2 15.0 220 224-501 44-287 (373)
164 TIGR02270 conserved hypothetic 22.5 1.2E+02 0.0026 34.0 4.9 57 253-325 120-176 (410)
165 KOG2149 Uncharacterized conser 21.8 4.6E+02 0.0099 29.2 8.9 108 293-413 61-172 (393)
166 PF01603 B56: Protein phosphat 20.6 1.1E+03 0.025 26.2 12.2 146 320-499 114-264 (409)
167 KOG0392 SNF2 family DNA-depend 20.5 2E+02 0.0043 36.6 6.3 97 263-366 827-928 (1549)
168 KOG0889 Histone acetyltransfer 20.4 4.6E+02 0.0099 37.2 9.9 80 328-412 714-797 (3550)
No 1
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-100 Score=859.27 Aligned_cols=534 Identities=21% Similarity=0.327 Sum_probs=484.2
Q ss_pred CCcc--chhhHHHHHHHHHHHHHHHHHhhh--------------hHhhhHHHHHHHHHHHHHhccccccCcccCHHHHHH
Q 005697 13 TVKD--NLLRFKTGKRGLLIFSALVTRHRK--------------FSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISL 76 (682)
Q Consensus 13 ~~~d--~~~~~K~kKw~~~~l~~l~~Ry~~--------------~~~~f~p~il~~~l~~l~~~~~~~~~~~lsd~~i~~ 76 (682)
||+| .+|||||||||++||||+|+||++ |..+|+|.|++++++++.+ |.. +.|+++|++++
T Consensus 247 d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~--~~~-~~yls~rvl~~ 323 (1010)
T KOG1991|consen 247 DPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQ--WRQ-QLYLSDRVLYY 323 (1010)
T ss_pred ChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHh-cccCCHHHHHH
Confidence 4555 889999999999999999999996 4678999999999999999 766 99999999999
Q ss_pred HHHHHHHHhccCcccccccccHHHHHHHHhhccccCChhhhhhhhhCHHHHHHhcCCCchhhhccccccccchhHHHHHH
Q 005697 77 AFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINL 156 (682)
Q Consensus 77 ~~~fl~~~v~~~~~~~ll~p~l~~Li~~vIfP~l~~teeD~Elwe~DP~EYIr~~~d~~~~~~~~~~ed~~S~R~aA~~l 156 (682)
+++|+++|++++.+|++++||+..|++++|||.||+|++|+|+||+||+||||+++|. ++|++|||.||.+|
T Consensus 324 ~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di--------~ed~~sp~~Aa~~~ 395 (1010)
T KOG1991|consen 324 LLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDI--------FEDGYSPDTAALDF 395 (1010)
T ss_pred HHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCch--------hcccCCCcHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999997 89999999999999
Q ss_pred HHHHhhcCCCCCCCCCCCcccccccccccccccccccchhhHHH--HHHHHhcCCCCCCCCCccccchhhHHHHHHHHHH
Q 005697 157 LGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELL--VLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGG 234 (682)
Q Consensus 157 L~~L~~~~~~~~~~~~~~~~~~~kr~k~~~~k~~~~~~~l~~il--i~~~L~~~~~~~~~~~~~~~~~~~kegaL~~lg~ 234 (682)
+.++ ++||||+ ++++++ +.++|++|...+. ..+++|+|||||+++|+
T Consensus 396 l~~~-----------------~~KR~ke----------~l~k~l~F~~~Il~~~~~~~~----~~~~~rqkdGAL~~vgs 444 (1010)
T KOG1991|consen 396 LTTL-----------------VSKRGKE----------TLPKILSFIVDILTRYKEASP----PNKNPRQKDGALRMVGS 444 (1010)
T ss_pred HHHH-----------------HHhcchh----------hhhhHHHHHHHHHHhhcccCC----CccChhhhhhHHHHHHH
Confidence 9995 8999887 455554 8999999987754 35689999999999999
Q ss_pred HHHHHhhhc--chhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhc-C-ChhhHHHHHHHHHHhhc-cCCCCCCCC
Q 005697 235 LQEFLREQK--SEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASC-L-PEDISADVYSSLLKALQ-MLDKGDTSC 309 (682)
Q Consensus 235 la~~l~~~~--~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~-l-~~~~l~~il~~ll~~L~-d~~~~~~~~ 309 (682)
+++.+.++. ++++|.|+.+||+|+|+ ||.+||||||||++++|++. + ++.++.++++++.+||. |++
T Consensus 445 l~~~L~K~s~~~~~mE~flv~hVfP~f~--s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~------ 516 (1010)
T KOG1991|consen 445 LASILLKKSPYKSQMEYFLVNHVFPEFQ--SPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNE------ 516 (1010)
T ss_pred HHHHHccCCchHHHHHHHHHHHhhHhhc--CchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCc------
Confidence 999998753 46799999999999999 89999999999999999986 6 78999999999999999 555
Q ss_pred cchhHHHHHHHHHhhhcC-----CCCCChHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHH
Q 005697 310 YPVRASAAGAIVGLLEND-----YMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAI 384 (682)
Q Consensus 310 ~pVrv~Aa~AL~~~l~~~-----~l~p~l~~llq~Ll~~L~~e~~e~d~l~~~L~~iVe~~~e~i~P~a~~L~~~L~~~f 384 (682)
+|||++||.||+.|+.++ +++|+++|+||+||+ |+|+. |+|.|+.+|+++|+.|+|+++|||++||++|+++|
T Consensus 517 lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~-L~ne~-End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F 594 (1010)
T KOG1991|consen 517 LPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLK-LSNEV-ENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETF 594 (1010)
T ss_pred CchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHH-HHHhc-chhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Confidence 999999999999999973 699999999999999 99998 99999999999999999999999999999999999
Q ss_pred HHhcCCCCCCChhhHHhHHHHHHHHHHhhhhhchhhhhhhccCCccchhHhH---HHHHHHHHHHhhhhhcccccccccC
Q 005697 385 SKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAA---IAKAFSALLQQAWLTHIQPLECEVS 461 (682)
Q Consensus 385 ~k~~~~~~~~~~~~~~~~~~aLa~~~~~~~~~~~~~~~~~~~~d~~~~~~~a---~L~ti~tllq~~~~~~~~e~~~s~~ 461 (682)
+|++....+ .++ ..++|+++ +|+||.|+| .|++
T Consensus 595 ~k~l~~~~~----------------------~~~----------~~ddk~iaA~GiL~Ti~Til------------~s~e 630 (1010)
T KOG1991|consen 595 LKVLQTSED----------------------EDE----------SDDDKAIAASGILRTISTIL------------LSLE 630 (1010)
T ss_pred HHHHhccCC----------------------CCc----------cchHHHHHHHHHHHHHHHHH------------HHHh
Confidence 999865221 111 11566665 999999999 9999
Q ss_pred CCcchHHhHHHHHHHHHhhcCchhHHHhhhHHHHHHHHHHHH------------hcccchhhhh---hchHHHHHHHHHh
Q 005697 462 APPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLI------------GDWHAWEETE---DLSVFDCIKEIVN 526 (682)
Q Consensus 462 ~~~~~~~~le~~l~~vi~~i~~~~~~l~~~~~~~l~e~~~li------------~~W~~~e~~~---~~~~~dyl~evi~ 526 (682)
+.|+++.+++..+.|+++++ +++++.|||+|+++++ .||++|+.+. ..+|+|||.+|++
T Consensus 631 ~~p~vl~~le~~~l~vi~~i------L~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~ 704 (1010)
T KOG1991|consen 631 NHPEVLKQLEPIVLPVIGFI------LKNDITDFYEELLEIVSSLTFLSKEISPIMWGLLELILEVFQDDGIDYFTDMMP 704 (1010)
T ss_pred ccHHHHHHHHHHHHHHHHHH------HHHhhHHHHHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 99999999999999999999 9999999999999999 7999999997 6789999999999
Q ss_pred hhccccccccccccCCCCCCCCCChhHHHHHHHHHHhhhhhcCchhHHHHhHhHHHHhhcccccccccccchhhHHHHHH
Q 005697 527 LHSKYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSC 606 (682)
Q Consensus 527 l~~~~~L~Nfi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ac~~~~~ll~~~~~~~~~~~~~~~~~~~f~~ 606 (682)
.|+|||+||++++..+|.|.+.+++|+.+.+++. +...+.+..||++.+.++ +++++ ..++++|.|++
T Consensus 705 -----~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e-~~~D~d~~~a~kLle~ii----L~~kg--~~dq~iplf~~ 772 (1010)
T KOG1991|consen 705 -----ALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSE-NGEDSDCESACKLLEVII----LNCKG--LLDQYIPLFLE 772 (1010)
T ss_pred -----HHhhheeeCchhhhccchHHHHHHHHHHHHHcCC-CCchHHHHHHHHHHHHHH----HHhcC--cHhhHhHHHHH
Confidence 9999999999999999999999999999776643 334456677999999887 88874 77999999999
Q ss_pred HHHhhhhhhcCCCCcchHhHHHHHHHhhccChHHHHHHHhhcCccc--HHHHHHHHH
Q 005697 607 AAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGG--FALWGSALA 661 (682)
Q Consensus 607 ~a~~~~~~~~~~~~~~~~~~~~vi~~~~~~~p~~~~~~L~~~~~~~--~~~w~~~~~ 661 (682)
+|.+|+++. .+++.+.+.+++||+||+||||..|+|+|++.+.+. |+.||+-+-
T Consensus 773 ~a~~~l~~~-~e~s~~~~~~leVvinalyynP~ltL~iLe~~~~~~~ff~~wf~~~~ 828 (1010)
T KOG1991|consen 773 LALSRLTRE-VETSELRVMLLEVVINALYYNPKLTLGILENQGFLNNFFTLWFQFIN 828 (1010)
T ss_pred HHHHHHhcc-ccchHHHHHHHHHHHHHHHcCcHHHHHHHHHcCCcccHHHHHHHHHH
Confidence 999999976 566788899999999999999999999999999965 999998653
No 2
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-85 Score=714.65 Aligned_cols=538 Identities=18% Similarity=0.193 Sum_probs=478.2
Q ss_pred CCcc--chhhHHHHHHHHHHHHHHHHHhhhh------------HhhhHHHHHHHHHHHHHhccccccCcccCHHHHHHHH
Q 005697 13 TVKD--NLLRFKTGKRGLLIFSALVTRHRKF------------SDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAF 78 (682)
Q Consensus 13 ~~~d--~~~~~K~kKw~~~~l~~l~~Ry~~~------------~~~f~p~il~~~l~~l~~~~~~~~~~~lsd~~i~~~~ 78 (682)
||++ .++|.||||||+.+|||+|+||.+. +.+++|.|++.++++++. |.++..|++|+++|++.
T Consensus 246 dpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~il~tffkqie~--wgqgqLWlsd~~LYfi~ 323 (970)
T COG5656 246 DPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMILATFFKQIEE--WGQGQLWLSDIELYFID 323 (970)
T ss_pred ChhhccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcCCeecchHHHHHHH
Confidence 4555 7999999999999999999999871 234899999999999998 99999999999999999
Q ss_pred HHHHHHhccCcccccccccHHHHHHHHhhccccCChhhhhhhhhCHHHHHHhcCCCchhhhccccccccchhHHHHHHHH
Q 005697 79 DVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLG 158 (682)
Q Consensus 79 ~fl~~~v~~~~~~~ll~p~l~~Li~~vIfP~l~~teeD~Elwe~DP~EYIr~~~d~~~~~~~~~~ed~~S~R~aA~~lL~ 158 (682)
.|+..|+..+.+|++++||+.-+++++|||.+|++++++|+||+||+|||||++|. +++.+||..||..|+.
T Consensus 324 ~Fve~cv~~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~df--------~d~g~spdlaal~fl~ 395 (970)
T COG5656 324 FFVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDF--------FDNGLSPDLAALFFLI 395 (970)
T ss_pred HHHHHHhhhHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcch--------hcCCCChhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999997 8899999999999999
Q ss_pred HHhhcCCCCCCCCCCCcccccccccccccccccccchhhHHH--HHHHHhcCCCCCCCCCccccchhhHHHHHHHHHHHH
Q 005697 159 VISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELL--VLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQ 236 (682)
Q Consensus 159 ~L~~~~~~~~~~~~~~~~~~~kr~k~~~~k~~~~~~~l~~il--i~~~L~~~~~~~~~~~~~~~~~~~kegaL~~lg~la 236 (682)
.+ ..||||. ++++|+ +..+|++|...+. +.+|++++||||++++++.
T Consensus 396 ~~-----------------~sKrke~----------TfqgiLsf~~sil~qsaa~ps----n~dnarq~egalr~lasi~ 444 (970)
T COG5656 396 IS-----------------KSKRKEE----------TFQGILSFLLSILGQSAATPS----NIDNARQAEGALRLLASIK 444 (970)
T ss_pred HH-----------------hcccchh----------hhhhHHHHHHHHHhcccCCCC----ccccHHHHhhHHHHHHHHH
Confidence 85 7788886 677776 7888988765432 4579999999999999999
Q ss_pred HHHhhhc--chhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcC-ChhhHHHHHHHHHHhhccCCCCCCCCcchh
Q 005697 237 EFLREQK--SEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCL-PEDISADVYSSLLKALQMLDKGDTSCYPVR 313 (682)
Q Consensus 237 ~~l~~~~--~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l-~~~~l~~il~~ll~~L~d~~~~~~~~~pVr 313 (682)
+.+.+.+ .+.++.|+.+||.|.|+ ++++|||+|||.++++|+.-+ ++..+.++|+++++||++++ +|||
T Consensus 445 s~itk~sp~an~me~fiv~hv~P~f~--s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~------lpv~ 516 (970)
T COG5656 445 SFITKMSPAANVMEYFIVNHVIPAFR--SNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNH------LPVM 516 (970)
T ss_pred HHhccCchHHHHHHHHHHHHhhHhhc--CcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCC------cchh
Confidence 9666532 24579999999999999 899999999999999996665 78899999999999999976 9999
Q ss_pred HHHHHHHHHhhhcC----CCCCChHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHhcC
Q 005697 314 ASAAGAIVGLLEND----YMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMH 389 (682)
Q Consensus 314 v~Aa~AL~~~l~~~----~l~p~l~~llq~Ll~~L~~e~~e~d~l~~~L~~iVe~~~e~i~P~a~~L~~~L~~~f~k~~~ 389 (682)
++||.||+.|+.++ .+..|+|++||+|+. |+|+. |.|.+..+|+.+|+.|+++++|||++|+.+|+++|+|++.
T Consensus 517 ieAalAlq~fi~~~q~h~k~sahVp~tmekLLs-LSn~f-eiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq 594 (970)
T COG5656 517 IEAALALQFFIFNEQSHEKFSAHVPETMEKLLS-LSNTF-EIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQ 594 (970)
T ss_pred hhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHH-hcccc-cchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHH
Confidence 99999999999974 788899999999999 99999 9999999999999999999999999999999999999976
Q ss_pred CCCCCChhhHHhHHHHHHHHHHhhhhhchhhhhhhccCCccchhHhH---HHHHHHHHHHhhhhhcccccccccCCCcch
Q 005697 390 PSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAA---IAKAFSALLQQAWLTHIQPLECEVSAPPSC 466 (682)
Q Consensus 390 ~~~~~~~~~~~~~~~aLa~~~~~~~~~~~~~~~~~~~~d~~~~~~~a---~L~ti~tllq~~~~~~~~e~~~s~~~~~~~ 466 (682)
+..++ + +| ..+..+||+|+ +|+|+.|++ +|+++.|++
T Consensus 595 ~l~en---------------------s-~d------~~s~vDDKqmaasGiL~T~~smi------------LSlen~p~v 634 (970)
T COG5656 595 SLLEN---------------------S-SD------TSSVVDDKQMAASGILRTIESMI------------LSLENRPLV 634 (970)
T ss_pred HHHcC---------------------C-cc------ccccccHHHHHHHHHHHHHHHHH------------HhcccchHH
Confidence 55432 1 11 12234688887 999999999 999999999
Q ss_pred HHhHHHHHHHHHhhcCchhHHHhhhHHHHHHHHHHHH------------hcccchhhhh----hchHHHHHHHHHhhhcc
Q 005697 467 IDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLI------------GDWHAWEETE----DLSVFDCIKEIVNLHSK 530 (682)
Q Consensus 467 ~~~le~~l~~vi~~i~~~~~~l~~~~~~~l~e~~~li------------~~W~~~e~~~----~~~~~dyl~evi~l~~~ 530 (682)
+.+++..++|+++|| +.+++++||.|+++++ .||.+||.+. +..-.+|++|+.+
T Consensus 635 Lk~le~slypvi~Fi------lkn~i~dfy~Ea~dildg~tf~skeI~pimwgi~Ell~~~l~~~~t~~y~ee~~~---- 704 (970)
T COG5656 635 LKYLEVSLYPVISFI------LKNEISDFYQEALDILDGYTFMSKEIEPIMWGIFELLLNLLIDEITAVYSEEVAD---- 704 (970)
T ss_pred HHHHHHHHHHHHHHH------HhhhHHHHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHHhcccccchhhhHHHHHH----
Confidence 999999999999999 9999999999999999 7999999986 2221499999999
Q ss_pred ccccccccccCCCCCCCCCChhHHHHHHHHHHhhhhhcCchhHHHHhHhHHHHhhcccccccccccchhhHHHHHHHHHh
Q 005697 531 YELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFS 610 (682)
Q Consensus 531 ~~L~Nfi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ac~~~~~ll~~~~~~~~~~~~~~~~~~~f~~~a~~ 610 (682)
.|+|||+||+.+|++++.|.+.+++++...+.. .....+....+|++.+.++ ++.+.+ ..++|+|.|+++|-+
T Consensus 705 -al~nfityG~~ef~~~~~y~~i~~eI~~~~l~s-E~n~l~D~~~vc~i~e~l~----Ln~rd~-Ll~qy~plfi~vags 777 (970)
T COG5656 705 -ALDNFITYGKTEFMDAGIYGSICSEISKLCLCS-EENFLEDFIGVCRIIESLI----LNIRDE-LLSQYLPLFISVAGS 777 (970)
T ss_pred -HHHHHHHhCccccccccchhHHHHHHHHHHHcc-hhhhHHHHHHHHHHHHHHH----HHccch-hHHhhhHHHHHHHhh
Confidence 999999999999999999999999999954432 2233345566999999987 666643 568899999999999
Q ss_pred hhhhhcCCCCcchHhHHHHHHHhhccChHHHHHHHhhcCccc--HHHHHHH
Q 005697 611 RFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDGG--FALWGSA 659 (682)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~vi~~~~~~~p~~~~~~L~~~~~~~--~~~w~~~ 659 (682)
.++.+++.+ ++.|..+++|++|+|++|-.|+|||+..+++. |+.||+.
T Consensus 778 ~l~~~dElg-~~sv~aleliinnli~~P~eTLqiLe~qg~l~~FF~~wf~~ 827 (970)
T COG5656 778 GLKMIDELG-PASVYALELIINNLILRPKETLQILEEQGYLQSFFEKWFSQ 827 (970)
T ss_pred hhhcccccc-chhhhHHHHHHHHHhcChHHHHHHHHHcCcHHHHHHHHHhc
Confidence 999888777 78999999999999999999999999999976 9999987
No 3
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-40 Score=368.03 Aligned_cols=487 Identities=17% Similarity=0.196 Sum_probs=382.9
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHhhhhHhhhHHHHHHHHHHHHHhccccccCcccCHHHHHHHHHHHHHHhccCcccc
Q 005697 13 TVKDNLLRFKTGKRGLLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWR 92 (682)
Q Consensus 13 ~~~d~~~~~K~kKw~~~~l~~l~~Ry~~~~~~f~p~il~~~l~~l~~~~~~~~~~~lsd~~i~~~~~fl~~~v~~~~~~~ 92 (682)
+.++....-|.|--+..|++.+.+||.+.++.|+|.|++++|.++... +.....|.+++.+++||+.+++.+.+..
T Consensus 253 ~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~----s~~~kyD~Lvs~Al~FLt~V~~r~~y~~ 328 (960)
T KOG1992|consen 253 DEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVST----SPDTKYDYLVSKALQFLTSVSRRPHYAE 328 (960)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhc----CCCccHHHHHHHHHHHHHHHHhhhhhHh
Confidence 444466778899999999999999999999999999999999999863 3556689999999999999998866655
Q ss_pred ccc--ccHHHHHHHHhhccccCChhhhhhhhhCHHHHHHhcCCCchhhhccccccccchhHHHHHHHHHHhhcCCCCCCC
Q 005697 93 LVS--PHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGT 170 (682)
Q Consensus 93 ll~--p~l~~Li~~vIfP~l~~teeD~Elwe~DP~EYIr~~~d~~~~~~~~~~ed~~S~R~aA~~lL~~L~~~~~~~~~~ 170 (682)
++. ..+.+|++.+++|+++++++|+|+|||||.|||||+++ +.|..|+|++|+++++.|
T Consensus 329 ~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlE---------GsDvdTRRR~a~dlvrgL---------- 389 (960)
T KOG1992|consen 329 LFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLE---------GSDVDTRRRAAIDLVRGL---------- 389 (960)
T ss_pred hhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcc---------cCCcchhHHHHHHHHHHH----------
Confidence 664 67899999999999999999999999999999999998 778999999999999996
Q ss_pred CCCCcccccccccccccccccccchhhHHH---HHHHHhcCCCCCCCCCccccchhhHHHHHHHHHHHHHHHhhhcc---
Q 005697 171 PSNCSSVSSKRKKGEKSKRNSMRSTMGELL---VLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKS--- 244 (682)
Q Consensus 171 ~~~~~~~~~kr~k~~~~k~~~~~~~l~~il---i~~~L~~~~~~~~~~~~~~~~~~~kegaL~~lg~la~~l~~~~~--- 244 (682)
++++ ++ ++.+ ++ ++..|.+|..++ +.||+.||.|++++.+++.+..+++.
T Consensus 390 -------~~~f-e~---------~vt~-v~~~~v~~~l~~y~~nP------S~nWk~kd~aiyL~talaik~~t~~~Gvt 445 (960)
T KOG1992|consen 390 -------CKNF-EG---------QVTG-VFSSEVQRLLDQYSKNP------SGNWKKKDRAIYLVTALAIKGQTAKHGVT 445 (960)
T ss_pred -------HHHh-cc---------hhHH-HHHHHHHHHHHHhccCC------CccccccchhhhhhHHHHhhcchhhccee
Confidence 5443 43 1333 33 888999998765 45899999999999999988655321
Q ss_pred ---hh--HHHHHHHhhhhcccC--CCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHH
Q 005697 245 ---EF--TANLVRSRVLPLYSV--SVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAA 317 (682)
Q Consensus 245 ---~~--le~fL~~~VlP~l~~--~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa 317 (682)
+. +..|+.++|+|+|.. ..++|+||+.|..++-.|+++++++.+..+++.+++.|+.+. .+|+.|||
T Consensus 446 stn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s------~vvhsYAA 519 (960)
T KOG1992|consen 446 STNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFLEAES------RVVHSYAA 519 (960)
T ss_pred eccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHHHHHhccCcc------hHHHHHHH
Confidence 11 479999999999984 158899999999999999999999999999999999999887 89999999
Q ss_pred HHHHHhhhc-----------CCCCCChHHHHHHHHHhhcccc-hhhhHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHH
Q 005697 318 GAIVGLLEN-----------DYMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANENVADHIPYIVSSLVAAIS 385 (682)
Q Consensus 318 ~AL~~~l~~-----------~~l~p~l~~llq~Ll~~L~~e~-~e~d~l~~~L~~iVe~~~e~i~P~a~~L~~~L~~~f~ 385 (682)
.|+..++.. +.+.|++.++++.|++.++... .||+++++++++++...++.+.||++.++.+|.+...
T Consensus 520 ~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~ 599 (960)
T KOG1992|consen 520 IAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVE 599 (960)
T ss_pred HHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHH
Confidence 999998653 2689999999999999887665 6999999999999999999999999999999999999
Q ss_pred HhcCCCCCCChhhHHhHHHHHHHHHHhhhhhchhhhhhhccCCccchhHhHHHHHHHHHHHhhhhhcccccccccCCCcc
Q 005697 386 KHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPS 465 (682)
Q Consensus 386 k~~~~~~~~~~~~~~~~~~aLa~~~~~~~~~~~~~~~~~~~~d~~~~~~~a~L~ti~tllq~~~~~~~~e~~~s~~~~~~ 465 (682)
+.+++|.+ |+++|+.|+++|++-+-.... .|+
T Consensus 600 ~v~KNPs~--P~fnHYLFEsi~~li~~t~~~----------------------------------------------~~~ 631 (960)
T KOG1992|consen 600 EVSKNPSN--PQFNHYLFESIGLLIRKTCKA----------------------------------------------NPS 631 (960)
T ss_pred HHhcCCCC--chhHHHHHHHHHHHHHHHhcc----------------------------------------------Cch
Confidence 99988876 699999888887666644333 333
Q ss_pred hHHhHHHHHHHHHhhcCchhHHHhhhHHHHHHHHHHHH-------------hcccchhhhh-----hchHHHHHHHHHhh
Q 005697 466 CIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLI-------------GDWHAWEETE-----DLSVFDCIKEIVNL 527 (682)
Q Consensus 466 ~~~~le~~l~~vi~~i~~~~~~l~~~~~~~l~e~~~li-------------~~W~~~e~~~-----~~~~~dyl~evi~l 527 (682)
.+..++..+.|+++-| +++++.||+..++.++ .-|..++.+- +..| -+--++-
T Consensus 632 ~vs~~e~aL~p~fq~I------l~eDI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~g--Nipalvr- 702 (960)
T KOG1992|consen 632 AVSSLEEALFPVFQTI------LSEDIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSG--NIPALVR- 702 (960)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcC--CcHHHHH-
Confidence 3444555555555555 5566666665555554 1122222221 1112 2334455
Q ss_pred hccccccccccccCCCCCCCCCChhHHHHHHHHHHhhhhhcCchhHHHHhHhHHHHhhcccccccccccchhhHHHHHHH
Q 005697 528 HSKYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCA 607 (682)
Q Consensus 528 ~~~~~L~Nfi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ac~~~~~ll~~~~~~~~~~~~~~~~~~~f~~~ 607 (682)
-|.-|+.+|...+.++ +...-+++++.+++.+.. ....++.+..+++..+ .. .....|+-....+
T Consensus 703 ----Ll~aflk~g~~~~~~~-~~l~~iLGifqkLiaSka-----~Dh~GF~LLn~i~~~~----~~-~~~~py~k~i~~l 767 (960)
T KOG1992|consen 703 ----LLQAFLKTGSQIVEAA-DKLSGILGIFQKLIASKA-----NDHHGFYLLNTIIESI----PP-NELAPYMKQIFGL 767 (960)
T ss_pred ----HHHHHHhcCchhhccc-ccchhHHHHHHHHhcCcc-----cchhHHHHHHHHHhcC----CH-hhhhHHHHHHHHH
Confidence 4778899999988855 466778888887775322 2345888888888443 22 1346788888888
Q ss_pred HHhhhhhhcCCCCcchHhH
Q 005697 608 AFSRFRAIQSKPSSLWKPV 626 (682)
Q Consensus 608 a~~~~~~~~~~~~~~~~~~ 626 (682)
.++|++. |+...|.|-+
T Consensus 768 lf~Rlqn--skT~kf~k~~ 784 (960)
T KOG1992|consen 768 LFQRLQN--SKTEKFVKSF 784 (960)
T ss_pred HHHHHhc--cCcHHHHHHH
Confidence 8899874 5555555543
No 4
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=100.00 E-value=1e-42 Score=376.34 Aligned_cols=257 Identities=24% Similarity=0.286 Sum_probs=208.1
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHHHhhhhHhhhHHHHHHHHHHHHHhccccccCcccCHHHHHHHHHHHHHHhccCccc
Q 005697 12 NTVKDNLLRFKTGKRGLLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGW 91 (682)
Q Consensus 12 ~~~~d~~~~~K~kKw~~~~l~~l~~Ry~~~~~~f~p~il~~~l~~l~~~~~~~~~~~lsd~~i~~~~~fl~~~v~~~~~~ 91 (682)
.+..+..++||+|+|+.++++++.+||.+.+++|+|.|++.+|++|.. +.. ....|.+++.+++||+.+++...++
T Consensus 101 ~d~~e~~~l~kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~--~~~--~~~~D~lv~~al~FL~~v~~~~~~~ 176 (370)
T PF08506_consen 101 DDDDEPGLLEKVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTK--ISQ--QPKYDILVSKALQFLSSVAESPHHK 176 (370)
T ss_dssp T-SSS--HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC----S--SGGGHHHHHHHHHHHHHHHTSHHHH
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhh--cccccHHHHHHHHHHHHHHcchhHH
Confidence 445558889999999999999999999999999999999999999987 332 3346999999999999998875544
Q ss_pred ccc--cccHHHHHHHHhhccccCChhhhhhhhhCHHHHHHhcCCCchhhhccccccccchhHHHHHHHHHHhhcCCCCCC
Q 005697 92 RLV--SPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMG 169 (682)
Q Consensus 92 ~ll--~p~l~~Li~~vIfP~l~~teeD~Elwe~DP~EYIr~~~d~~~~~~~~~~ed~~S~R~aA~~lL~~L~~~~~~~~~ 169 (682)
.++ +||+.+|++++|||+||+|++|+|+|||||+|||||++| ++|.+|||+||++||++|
T Consensus 177 ~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e---------~sd~~TrR~AA~dfl~~L--------- 238 (370)
T PF08506_consen 177 NLFENKPHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLE---------GSDSDTRRRAACDFLRSL--------- 238 (370)
T ss_dssp TTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSC---------SS---SHHHHHHHHHHHH---------
T ss_pred HHhCCHHHHHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhcc---------ccccCCcHHHHHHHHHHH---------
Confidence 466 589999999999999999999999999999999999998 568999999999999996
Q ss_pred CCCCCcccccccccccccccccccchhhHH--HHHHHHhcCCCCCCCCCccccchhhHHHHHHHHHHHHHHHhhhcc---
Q 005697 170 TPSNCSSVSSKRKKGEKSKRNSMRSTMGEL--LVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKS--- 244 (682)
Q Consensus 170 ~~~~~~~~~~kr~k~~~~k~~~~~~~l~~i--li~~~L~~~~~~~~~~~~~~~~~~~kegaL~~lg~la~~l~~~~~--- 244 (682)
+++|++. +.+.+ +++.++++|.+.+ ..+||.||||++++|+++.+....+.
T Consensus 239 --------~~~~~~~----------v~~i~~~~i~~~l~~y~~~~------~~~w~~KD~Al~Li~ala~k~~t~~~Gvt 294 (370)
T PF08506_consen 239 --------CKKFEKQ----------VTSILMQYIQQLLQQYASNP------SNNWRSKDGALYLIGALASKGSTTKSGVT 294 (370)
T ss_dssp --------HHHHHHH----------HHHHHHHHHHHHHHHHHH-T------TT-HHHHHHHHHHHHHHHBSS--BTTB-S
T ss_pred --------HHHHhHH----------HHHHHHHHHHHHHHHHhhCC------cccHHHHHHHHHHHHHHHhhhccccCCcc
Confidence 7776664 34332 2888999887643 35899999999999999988754321
Q ss_pred ---h--hHHHHHHHhhhhcccC-CCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHH
Q 005697 245 ---E--FTANLVRSRVLPLYSV-SVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAG 318 (682)
Q Consensus 245 ---~--~le~fL~~~VlP~l~~-~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~ 318 (682)
+ .+++|+.++|+|+|+. .+.+|+||+||||++..|++.++++.+..+++.++++|++++ .+||.+||.
T Consensus 295 ~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~------~vv~tyAA~ 368 (370)
T PF08506_consen 295 QTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSS------YVVHTYAAI 368 (370)
T ss_dssp -B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-------HHHHHHHHH
T ss_pred cccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCC------cchhhhhhh
Confidence 1 3699999999999992 368999999999999999999999999999999999999998 999999999
Q ss_pred HH
Q 005697 319 AI 320 (682)
Q Consensus 319 AL 320 (682)
||
T Consensus 369 ~i 370 (370)
T PF08506_consen 369 AI 370 (370)
T ss_dssp HH
T ss_pred hC
Confidence 86
No 5
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=100.00 E-value=4.4e-31 Score=296.52 Aligned_cols=534 Identities=15% Similarity=0.150 Sum_probs=399.7
Q ss_pred ccCCCCCCccchhhHHHHHHHHHHHHHHHHHhhhhHhhhHHHHHHHHHHHHHhcc--cc----------------ccCc-
Q 005697 7 SFDDGNTVKDNLLRFKTGKRGLLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYSA--NI----------------SKLD- 67 (682)
Q Consensus 7 ~~~~~~~~~d~~~~~K~kKw~~~~l~~l~~Ry~~~~~~f~p~il~~~l~~l~~~~--~~----------------~~~~- 67 (682)
+|.|+.+..+- ..|-.+...++.++.++.++.+....|+-.++..+|+++++.. |. +.+.
T Consensus 231 ~l~h~l~~~~g-~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~ 309 (1005)
T KOG2274|consen 231 ILEHPLQRNDG-SDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEE 309 (1005)
T ss_pred HHhhhhccccc-chHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhh
Confidence 46676666665 5589999999999999999999999999999999999886531 11 1122
Q ss_pred ccCHHHHHHHHHHHHHHhccCcccccccccHHHHHHHHhhccccCChhhhhhhhhCHHHHHHhcCCCchhhhcccccccc
Q 005697 68 FLQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLF 147 (682)
Q Consensus 68 ~lsd~~i~~~~~fl~~~v~~~~~~~ll~p~l~~Li~~vIfP~l~~teeD~Elwe~DP~EYIr~~~d~~~~~~~~~~ed~~ 147 (682)
.-.+.++.++++|++.+++.....+.++..+.++++..+ -+++++++++|.|..||++||.++++ .+
T Consensus 310 ~~~~~l~i~i~eF~s~i~t~~~~~~ti~~~l~~lI~~~v-~y~Qlseeqie~w~sD~~~fV~dEd~------------~~ 376 (1005)
T KOG2274|consen 310 KSVETLVIQIVEFLSTIVTNRFLSKTIKKNLPELIYQLV-AYLQLSEEQIEVWTSDVNQFVADEDD------------GY 376 (1005)
T ss_pred hChHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-HHHHhhHHHHHHHhccHHHhhccCCC------------Cc
Confidence 124678999999999999987777788888999999886 67899999999999999999987665 37
Q ss_pred chhHHHHHHHHHHhhcCCCCCCCCCCCcccccccccccccccccccchhhHHHHHHHHhcCCCCCCCCCccccchhhHHH
Q 005697 148 TARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFG 227 (682)
Q Consensus 148 S~R~aA~~lL~~L~~~~~~~~~~~~~~~~~~~kr~k~~~~k~~~~~~~l~~ili~~~L~~~~~~~~~~~~~~~~~~~keg 227 (682)
+.|.++.+++.+++..+|.++..+.-. +..++.. ..=+.|... ...||+..++
T Consensus 377 ~~~~~~rd~~~~v~~~f~~~~i~~i~~--a~~~~~~-------------------es~at~~~~------~~~~wk~qea 429 (1005)
T KOG2274|consen 377 TARISVRDLLLEVITTFGNEGINPIQD--AAGRHFQ-------------------ESQATYLFN------NESWWKIQEA 429 (1005)
T ss_pred hhhhhHHHHHHHHHHhccchhhhHHHH--HHHHHHH-------------------HHHHHHHhc------chHHHHHHHH
Confidence 889999999988866666554432100 0000000 000111111 3469999999
Q ss_pred HHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhc--CChhhHHHHHHHHHHhhccCCCC
Q 005697 228 VLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASC--LPEDISADVYSSLLKALQMLDKG 305 (682)
Q Consensus 228 aL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~--l~~~~l~~il~~ll~~L~d~~~~ 305 (682)
.+.+.++....-. .+..-..+...+.-.+.. +..|+|-+||.|++++|++. ..++.+..+++..++++...+
T Consensus 430 ~l~a~~~~~~~~~---~dd~l~~l~~~~~~~l~~-~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~-- 503 (1005)
T KOG2274|consen 430 LLVAAESVRIDDA---NDDKLIELTIMIDNGLVY-QESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDV-- 503 (1005)
T ss_pred HHHHHhhcccCcc---hHHHHHHHHHHHHhhccc-ccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCC--
Confidence 9999888762211 111223333333333433 68899999999999999997 589999999999999998876
Q ss_pred CCCCcchhHHHHHHHHHhhhcCCCCCChHHHHHHHHHhhcccchhhhHHHHHHHHH--HHHhhhhhh-chHHHHHHHHHH
Q 005697 306 DTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSV--VGAANENVA-DHIPYIVSSLVA 382 (682)
Q Consensus 306 ~~~~~pVrv~Aa~AL~~~l~~~~l~p~l~~llq~Ll~~L~~e~~e~d~l~~~L~~i--Ve~~~e~i~-P~a~~L~~~L~~ 382 (682)
+.|||+.|++|+..++....+.|.+|.++..|.. +.... +.+.+.-+|+++ |.+++.+.+ .-...|++.+.+
T Consensus 504 ---~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~q-las~~-s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~ 578 (1005)
T KOG2274|consen 504 ---PPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQ-LASKS-SDEVLVLLMEALSSVVKLDPEFAASMESKICPLTIN 578 (1005)
T ss_pred ---CCchhHHHHHHHHhccCceeccccchHHHHHHHH-Hcccc-cHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHH
Confidence 4899999999999999888999999999999999 66655 455554444444 344444433 356789999999
Q ss_pred HHHHhcCCCCCCChhhHHhHHHHHHHHHHhhhhhc----hhhhh-hhccCCcc-chhHhHHHHHHHHHHHhhhhhccccc
Q 005697 383 AISKHMHPSSEPWPQVVERGFAALALMAQSWENFL----REEVE-LDQSSGKW-ESGQAAIAKAFSALLQQAWLTHIQPL 456 (682)
Q Consensus 383 ~f~k~~~~~~~~~~~~~~~~~~aLa~~~~~~~~~~----~~~~~-~~~~~d~~-~~~~~a~L~ti~tllq~~~~~~~~e~ 456 (682)
.|+++..+|-- ....+++|+.|.+.+.|+|+.. |+..+ ++...|+- ...+.+.++.+.|+||
T Consensus 579 lF~k~s~DP~V--~~~~qd~f~el~q~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr---------- 646 (1005)
T KOG2274|consen 579 LFLKYSEDPQV--ASLAQDLFEELLQIAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLR---------- 646 (1005)
T ss_pred HHHHhcCCchH--HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHh----------
Confidence 99999887733 3577889999999999998665 55544 33322222 4446669999999998
Q ss_pred ccccCCCcchHHhHHHHHHHHHhh--cCchhHHHhhh---HHHHHHHHHHHHhcccchhhhhhchHHHHHHHHHhhhccc
Q 005697 457 ECEVSAPPSCIDDSSMLLRSIILS--VSERNVIEELK---LSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKY 531 (682)
Q Consensus 457 ~~s~~~~~~~~~~le~~l~~vi~~--i~~~~~~l~~~---~~~~l~e~~~li~~W~~~e~~~~~~~~dyl~evi~l~~~~ 531 (682)
....|.|+.+ +...|+|++++ -+|++..+|++ +..|+.+-.+++..|+.- .++. +.|+++++.
T Consensus 647 -~tp~pL~~~l--~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e---~g~~-~~yImqV~s----- 714 (1005)
T KOG2274|consen 647 -NTPSPLPNLL--ICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDE---PGHN-LWYIMQVLS----- 714 (1005)
T ss_pred -cCCCCccHHH--HHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccC---CCcc-HHHHHHHHH-----
Confidence 5666777777 78899999999 67788888986 778889999999999982 2333 779999999
Q ss_pred cccccccccCCCCCCCCCChhHHHHHHH-HHHhhhhh---cCchhHHHHhHhHHHHhhcccccccccccchhhHHHHHHH
Q 005697 532 ELKNFIVRQMPPPPAPPVPPQSIIEGIG-AFLSEAIL---QYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCA 607 (682)
Q Consensus 532 ~L~Nfi~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~ac~~~~~ll~~~~~~~~~~~~~~~~~~~f~~~ 607 (682)
.|.| |.++++..+++|.+. +++++++. ...+..+|| ++++| ++.++..++|+++++|+|+
T Consensus 715 qLLd---------p~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~A------visrm-q~ae~lsviQsLi~VfahL 778 (1005)
T KOG2274|consen 715 QLLD---------PETSDSAAAFVGPLVLTLITHASSELGPNLDQILRA------VISRL-QQAETLSVIQSLIMVFAHL 778 (1005)
T ss_pred HHcC---------CccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHH------HHHHH-HHhhhHHHHHHHHHHHHHH
Confidence 9888 889999999999999 99999887 345668888 78888 8889888999999999999
Q ss_pred HHhhhhh----hcCCCCcchHhHHHHHHH
Q 005697 608 AFSRFRA----IQSKPSSLWKPVVLAISS 632 (682)
Q Consensus 608 a~~~~~~----~~~~~~~~~~~~~~vi~~ 632 (682)
...-+.. +.+-|.+-++|.+..++.
T Consensus 779 ~~t~~~~~l~FL~Slp~~~g~~AlefVMt 807 (1005)
T KOG2274|consen 779 VHTDLDQLLNFLSSLPGPTGEPALEFVMT 807 (1005)
T ss_pred hhCCHHHHHHHHHhCCCCCCCcHHHHHHH
Confidence 9765543 223345555555555553
No 6
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.5e-18 Score=193.63 Aligned_cols=524 Identities=14% Similarity=0.138 Sum_probs=320.6
Q ss_pred HHHHHHHHHHHhhhhHh--hhHHHHHHHHHHHHHhcc---c-cccCcccCHHHHHHHHHHHHHHhccCcccc--cc----
Q 005697 27 GLLIFSALVTRHRKFSD--KLMPDIMNSVLQIVKYSA---N-ISKLDFLQERIISLAFDVISHVLETGPGWR--LV---- 94 (682)
Q Consensus 27 ~~~~l~~l~~Ry~~~~~--~f~p~il~~~l~~l~~~~---~-~~~~~~lsd~~i~~~~~fl~~~v~~~~~~~--ll---- 94 (682)
-.+.+.-+++||+--+. .+.|..+......+.... + ..+..--.++...+++..+..++..+...- .+
T Consensus 269 l~K~l~~l~~rhpfsF~~~~~~~~~l~f~~~yIf~~~~~l~~~~~~~~~fe~f~iq~l~mlK~vm~~~~~~~s~~~k~~~ 348 (978)
T KOG1993|consen 269 LMKVLAFLFNRHPFSFSFYSPCPVKLEFSIDYIFDEYDFLGQISGHLSSFEEFFIQCLNMLKKVMIMKNYKFSLTIKEFC 348 (978)
T ss_pred HHHHHHHHhcCCCcccccccccceeeehhhhhhhcccchhcccccccccHHHHHHHHHHHHHHHHHhhcccccccchhcc
Confidence 34445555555542222 244555555555443320 0 011222246677777777776655432111 11
Q ss_pred -------------------cccHHHHHHHHhhccccCChhhhhhhhhCHHHHHHhcCCCchhhhccccccccchhHHHHH
Q 005697 95 -------------------SPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAIN 155 (682)
Q Consensus 95 -------------------~p~l~~Li~~vIfP~l~~teeD~Elwe~DP~EYIr~~~d~~~~~~~~~~ed~~S~R~aA~~ 155 (682)
.+.+..||..++--|+.++++|+|.|.+||++|+..+.-. .| .|+.|.+|..
T Consensus 349 d~~~~~~~~a~~i~~sFl~~~rIt~lcd~Lvt~YflLt~~eLEeW~~dPE~~~~Eq~~~------dw---ey~lRPCaE~ 419 (978)
T KOG1993|consen 349 DTKDEHLETAQKIYNSFLTDNRITNLCDLLVTHYFLLTEEELEEWTQDPEGWVLEQSGG------DW---EYNLRPCAEK 419 (978)
T ss_pred cCccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCHHHHHHHhcChHHhhhhcccc------cc---eeccchhHHH
Confidence 1346678888888899999999999999999999876642 14 7899999999
Q ss_pred HHHHHhhcCCCCCCCCCCCcccccccccccccccccccchhhHHHHHHHHhcCCCCCCC-CCccccchhhHHHHHHHHHH
Q 005697 156 LLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDA-NASHSRIQKDYFGVLMAYGG 234 (682)
Q Consensus 156 lL~~L~~~~~~~~~~~~~~~~~~~kr~k~~~~k~~~~~~~l~~ili~~~L~~~~~~~~~-~~~~~~~~~~kegaL~~lg~ 234 (682)
+...+ ...+.+ ++.|. +..++.+-.+...| +.++......|||++.++|.
T Consensus 420 L~~~l-----------------F~~ysq-----------llvP~-~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~ 470 (978)
T KOG1993|consen 420 LYKDL-----------------FDAYSQ-----------LLVPP-VLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGL 470 (978)
T ss_pred HHHHH-----------------HHHHHH-----------hhhHH-HHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHH
Confidence 99986 333223 45554 33444221111111 11245677899999999999
Q ss_pred HHHHHhhhcchhHHHHHHHhhhhcccCC-CCCcccHHHHHHHHHHhhhc-CChhhHHHHHHHHHHhhccCCCCCCCCcch
Q 005697 235 LQEFLREQKSEFTANLVRSRVLPLYSVS-VCLPYLVASANWILGELASC-LPEDISADVYSSLLKALQMLDKGDTSCYPV 312 (682)
Q Consensus 235 la~~l~~~~~~~le~fL~~~VlP~l~~~-s~~p~LrarA~~~l~~f~~~-l~~~~l~~il~~ll~~L~d~~~~~~~~~pV 312 (682)
-+..+.+ .-+ ...+|.+..+|+++.+ .....+|+|..|++|+|.+. .+.+....+|.+.++.|+|.+ +.||
T Consensus 471 ~a~~l~~-~~d-F~~Wl~~~llpEl~~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~-----D~vV 543 (978)
T KOG1993|consen 471 AAYELSN-ILD-FDKWLQEALLPELANDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQN-----DLVV 543 (978)
T ss_pred HHHHHHh-cCC-HHHHHHHhhCHHhhhcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccc-----ccee
Confidence 8888764 112 4789999999999953 45569999999999999996 788899999999999999985 4999
Q ss_pred hHHHHHHHHHhhhc-----CCCCCChHHHHHHHHHhhcccc--hhhhHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHH
Q 005697 313 RASAAGAIVGLLEN-----DYMPPEWYPLLQVIVGRIGYED--EENSILFELLSSVVGAANENVADHIPYIVSSLVAAIS 385 (682)
Q Consensus 313 rv~Aa~AL~~~l~~-----~~l~p~l~~llq~Ll~~L~~e~--~e~d~l~~~L~~iVe~~~e~i~P~a~~L~~~L~~~f~ 385 (682)
|++|+++++..+++ +.+.|+++.+...+++.+.... +..-.+..+|.+++++.++.|+||+.++++-|-..|
T Consensus 544 ~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LW- 622 (978)
T KOG1993|consen 544 RLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLW- 622 (978)
T ss_pred ehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-
Confidence 99999999999986 5788999888888888554332 123347889999999999999999999988776555
Q ss_pred HhcCCCCCCChhhHHhHHHHHHHHHHhhhhhchhhhhhhccCCccchhHhHHHHHHHHHHHhhhhhcccccccccCCCcc
Q 005697 386 KHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPS 465 (682)
Q Consensus 386 k~~~~~~~~~~~~~~~~~~aLa~~~~~~~~~~~~~~~~~~~~d~~~~~~~a~L~ti~tllq~~~~~~~~e~~~s~~~~~~ 465 (682)
+. +.. ..--+.++|.|+..+|+ +....+.
T Consensus 623 e~----------------------------s~~-----------e~lLr~alL~~L~~lV~------------alg~qS~ 651 (978)
T KOG1993|consen 623 EE----------------------------SEE-----------EPLLRCALLATLRNLVN------------ALGAQSF 651 (978)
T ss_pred hh----------------------------hcc-----------CcHHHHHHHHHHHHHHH------------HhccCCc
Confidence 11 100 02335678888888883 4333332
Q ss_pred hHHhHHHHHHHHHhhcCchhHHHhh-hHHHHHHHHHHHHhcccchhhhhhchHHHHHHHHHhhh------cccccccccc
Q 005697 466 CIDDSSMLLRSIILSVSERNVIEEL-KLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLH------SKYELKNFIV 538 (682)
Q Consensus 466 ~~~~le~~l~~vi~~i~~~~~~l~~-~~~~~l~e~~~li~~W~~~e~~~~~~~~dyl~evi~l~------~~~~L~Nfi~ 538 (682)
. +...++||+.+..|.+..-.. =.+|=+.=|.-.+..-..+..-. ..-+.++...+..+ +-.-++.|+.
T Consensus 652 ~---~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~l-l~L~p~l~~~iE~ste~L~t~l~Ii~sYil 727 (978)
T KOG1993|consen 652 E---FYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPEL-LLLFPHLLYIIEQSTENLPTVLMIISSYIL 727 (978)
T ss_pred c---chHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 2 346679999986554332100 02233333333332222211110 01112222222111 0113566666
Q ss_pred ccCCCCCCCCCChhHHHHHHHHHHhhhhhcCchhHHHHhHhHHHHhhcccccccccccchhhHHHHHHHHHhhhhhhcCC
Q 005697 539 RQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSK 618 (682)
Q Consensus 539 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ac~~~~~ll~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~~~ 618 (682)
-+.+.|.++ |...+++.+...+.+.-+ +....-|+.++.++..- -.++ ..+.+..+...|..+-...+.
T Consensus 728 Ld~~~fl~~--y~~~i~k~~~~~l~dvr~---egl~avLkiveili~t~-~il~-----~~~~~~~L~~lf~~I~~~~~y 796 (978)
T KOG1993|consen 728 LDNTVFLND--YAFGIFKKLNDLLDDVRN---EGLQAVLKIVEILIKTN-PILG-----SLLFSPLLSRLFLSIAENDKY 796 (978)
T ss_pred hccHHHHHH--HHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHhhh-HHHH-----hhhcchhhHHHHHHHHhCCCC
Confidence 555555544 555666666555443222 23445678888776331 1111 122222333333333334455
Q ss_pred CCcchHhHHHHHHHhhccChHHHHHHHhhcCc---c---cHHHHHHHHHhh
Q 005697 619 PSSLWKPVVLAISSCYLCYPAVVEGILKKDED---G---GFALWGSALAFL 663 (682)
Q Consensus 619 ~~~~~~~~~~vi~~~~~~~p~~~~~~L~~~~~---~---~~~~w~~~~~~~ 663 (682)
|..+...+ .||+--.+-||+....+|+..+. . ....|..-..++
T Consensus 797 P~~~~~yl-~vvaRi~l~n~~~~msvlqt~~~~d~~~~~li~~WI~~~~~I 846 (978)
T KOG1993|consen 797 PYVMGEYL-LVVARISLRNPSLFMSVLQTKNTYDILIAMLIGNWILLFDHI 846 (978)
T ss_pred chhHHHHH-HHHHHHHhcChHHHHHHHHhhhhHHHHHHHHHHHHHHHcccC
Confidence 55555554 67777777899999999998873 1 277887655443
No 7
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=6.5e-16 Score=180.01 Aligned_cols=321 Identities=18% Similarity=0.180 Sum_probs=233.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhHhhhHHHHHHHHHHHHHhccccccCcccCHHHHHHHHHHHHHHhccCccc-ccccccHHH
Q 005697 22 KTGKRGLLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGW-RLVSPHFSV 100 (682)
Q Consensus 22 K~kKw~~~~l~~l~~Ry~~~~~~f~p~il~~~l~~l~~~~~~~~~~~lsd~~i~~~~~fl~~~v~~~~~~-~ll~p~l~~ 100 (682)
+.-|-++..++-|..--++++.+++.++++..+++.... -+.+...+.+++||..+++..+.. |...+...+
T Consensus 221 ~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~-------~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~ 293 (1075)
T KOG2171|consen 221 DAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNK-------ELENSIRHLALEFLVSLSEYAPAMCKKLALLGHT 293 (1075)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcc-------cccHHHHHHHHHHHHHHHHhhHHHhhhchhhhcc
Confidence 445788888888888888999999999999999999864 266889999999999999984432 223343444
Q ss_pred HHHHHhhccccCChhhh-hhhhhCHHHHHHhcCCCchhhhccccccccchhHHHHHHHHHHhhcCCCCCCCCCCCccccc
Q 005697 101 LLDKAIFPALVLNEKDI-SEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSNCSSVSS 179 (682)
Q Consensus 101 Li~~vIfP~l~~teeD~-Elwe~DP~EYIr~~~d~~~~~~~~~~ed~~S~R~aA~~lL~~L~~~~~~~~~~~~~~~~~~~ 179 (682)
|+-.+ .-+++|.+. +.|.+. ++.| .||..||-+.|...|..+| ++
T Consensus 294 lv~~~---l~~mte~~~D~ew~~~------d~~d---------ed~~~~~~~~A~~~lDrlA----------------~~ 339 (1075)
T KOG2171|consen 294 LVPVL---LAMMTEEEDDDEWSNE------DDLD---------EDDEETPYRAAEQALDRLA----------------LH 339 (1075)
T ss_pred HHHHH---HHhcCCcccchhhccc------cccc---------cccccCcHHHHHHHHHHHH----------------hc
Confidence 44332 223444332 344331 1122 2345789999999999984 43
Q ss_pred ccccccccccccccchhhHHHHHHHHhcCCCCCCCCCccccchhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcc
Q 005697 180 KRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLY 259 (682)
Q Consensus 180 kr~k~~~~k~~~~~~~l~~ili~~~L~~~~~~~~~~~~~~~~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l 259 (682)
-.+|. ++.++ .+.+.++.+ +.+|+.+.|+|++++++++.+.+.-.+.+++.+ ++|++.|
T Consensus 340 L~g~~----------v~p~~--~~~l~~~l~--------S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il-~~Vl~~l 398 (1075)
T KOG2171|consen 340 LGGKQ----------VLPPL--FEALEAMLQ--------STEWKERHAALLALSVIAEGCSDVMIGNLPKIL-PIVLNGL 398 (1075)
T ss_pred CChhh----------ehHHH--HHHHHHHhc--------CCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHH-HHHHhhc
Confidence 33343 55543 344444332 348999999999999999998764344454544 5899999
Q ss_pred cCCCCCcccHHHHHHHHHHhhhcCChhh----HHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhc---CCCCCC
Q 005697 260 SVSVCLPYLVASANWILGELASCLPEDI----SADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN---DYMPPE 332 (682)
Q Consensus 260 ~~~s~~p~LrarA~~~l~~f~~~l~~~~----l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~---~~l~p~ 332 (682)
+ +|||.+|-.||.++|+++..+.|+. -..+.++++..+.++. ...|+..||.|+-+|.+. +.+.||
T Consensus 399 ~--DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~-----~~rV~ahAa~al~nf~E~~~~~~l~pY 471 (1075)
T KOG2171|consen 399 N--DPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQ-----NVRVQAHAAAALVNFSEECDKSILEPY 471 (1075)
T ss_pred C--CCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccC-----chHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 9 8999999999999999999876543 3445556667776665 378999999999999875 589999
Q ss_pred hHHHHHHHHHhhcccc--hhhhHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHhcCCCCCCChhhHHhHHHHHHHHH
Q 005697 333 WYPLLQVIVGRIGYED--EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMA 410 (682)
Q Consensus 333 l~~llq~Ll~~L~~e~--~e~d~l~~~L~~iVe~~~e~i~P~a~~L~~~L~~~f~k~~~~~~~~~~~~~~~~~~aLa~~~ 410 (682)
++++|+++|..|.+.. .--+.++.+|.++.+..++.+.||...+|+.|...+..--.+... .++-..+++++.++
T Consensus 472 Ld~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r---~LrgktmEcisli~ 548 (1075)
T KOG2171|consen 472 LDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLR---ELRGKTMECLSLIA 548 (1075)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhH---HHHhhHHHHHHHHH
Confidence 9999997777554332 246678999999999999999999999999998887443222221 34445689999999
Q ss_pred Hhhh
Q 005697 411 QSWE 414 (682)
Q Consensus 411 ~~~~ 414 (682)
.+++
T Consensus 549 ~AVG 552 (1075)
T KOG2171|consen 549 RAVG 552 (1075)
T ss_pred HHhh
Confidence 9988
No 8
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=8.5e-16 Score=169.14 Aligned_cols=307 Identities=17% Similarity=0.205 Sum_probs=227.0
Q ss_pred hhHHHHHHHHHHHHHhccccccCcccCHHHHHHHHHHHHHHhccCcccccccccHHHHHHHHhhccccCChhhhhhhhh-
Q 005697 44 KLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEE- 122 (682)
Q Consensus 44 ~f~p~il~~~l~~l~~~~~~~~~~~lsd~~i~~~~~fl~~~v~~~~~~~ll~p~l~~Li~~vIfP~l~~teeD~Elwe~- 122 (682)
.++++|++-+++..+. ..+.+...+-+|.....+.+-....+.||+..|+-.. +-.|.++|.|+-+-++
T Consensus 252 phl~~IveyML~~tqd---------~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvL-l~~M~Ysd~D~~LL~~~ 321 (885)
T KOG2023|consen 252 PHLDNIVEYMLQRTQD---------VDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVL-LSGMVYSDDDIILLKNN 321 (885)
T ss_pred cchHHHHHHHHHHccC---------cchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHH-HccCccccccHHHhcCc
Confidence 4455566666665543 2356888999999999999888889999999999755 6899999999888883
Q ss_pred CHHHHHHhc-----------------------CCCchhhhcccccc---ccchhHHHHHHHHHHhhcCCCCCCCCCCCcc
Q 005697 123 DADEYIRKN-----------------------FPSELEEISGWRED---LFTARKSAINLLGVISVSKGPPMGTPSNCSS 176 (682)
Q Consensus 123 DP~EYIr~~-----------------------~d~~~~~~~~~~ed---~~S~R~aA~~lL~~L~~~~~~~~~~~~~~~~ 176 (682)
|.++.+.+. +|.+ |+.+ .+| ..+.|.++.-.|..|
T Consensus 322 eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDddd-De~D--DdD~~~dWNLRkCSAAaLDVL---------------- 382 (885)
T KOG2023|consen 322 EEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDD-DEDD--DDDAFSDWNLRKCSAAALDVL---------------- 382 (885)
T ss_pred cccccCCchhhhccchhhhchhccCccccccccccc-cccc--cccccccccHhhccHHHHHHH----------------
Confidence 322222110 0000 1000 011 235787777777775
Q ss_pred cccccccccccccccccchhhHHHHHHHHhcCCCCCCCCCccccchhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhh
Q 005697 177 VSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVL 256 (682)
Q Consensus 177 ~~~kr~k~~~~k~~~~~~~l~~ili~~~L~~~~~~~~~~~~~~~~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~Vl 256 (682)
.+-.++. .+.. +.++|.+... .+.|+.||++..++|++|+.+.+..-+++ +-+..+.+
T Consensus 383 -anvf~~e----------lL~~--l~PlLk~~L~--------~~~W~vrEagvLAlGAIAEGcM~g~~p~L-peLip~l~ 440 (885)
T KOG2023|consen 383 -ANVFGDE----------LLPI--LLPLLKEHLS--------SEEWKVREAGVLALGAIAEGCMQGFVPHL-PELIPFLL 440 (885)
T ss_pred -HHhhHHH----------HHHH--HHHHHHHHcC--------cchhhhhhhhHHHHHHHHHHHhhhcccch-HHHHHHHH
Confidence 2223333 4542 5567765322 34899999999999999999986322233 23455667
Q ss_pred hcccCCCCCcccHHHHHHHHHHhhhc-C---ChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhc--CCCC
Q 005697 257 PLYSVSVCLPYLVASANWILGELASC-L---PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN--DYMP 330 (682)
Q Consensus 257 P~l~~~s~~p~LrarA~~~l~~f~~~-l---~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~--~~l~ 330 (682)
+.+. +..|.+|.-+||++|+|++. + +.+.+..+++++++.+.|.+ --|+-.||.|...|.++ +.+.
T Consensus 441 ~~L~--DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~N------K~VQEAAcsAfAtleE~A~~eLV 512 (885)
T KOG2023|consen 441 SLLD--DKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSN------KKVQEAACSAFATLEEEAGEELV 512 (885)
T ss_pred HHhc--cCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhccc------HHHHHHHHHHHHHHHHhccchhH
Confidence 7788 79999999999999999996 3 24789999999999999998 78999999999999997 5899
Q ss_pred CChHHHHHHHHHhhcccc-hhhhHHHHHHHHHHHHhhhhhh-c-hHHHHHHHHHHHHHHhcCCCCCCChhhHHhHHHHHH
Q 005697 331 PEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANENVA-D-HIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALA 407 (682)
Q Consensus 331 p~l~~llq~Ll~~L~~e~-~e~d~l~~~L~~iVe~~~e~i~-P-~a~~L~~~L~~~f~k~~~~~~~~~~~~~~~~~~aLa 407 (682)
||+.++++.|..++.... +..-.|..++.++.+..+.++- | |...|++-|++-|-.+-.+..+-|| .++||+
T Consensus 513 p~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfP-----LLEClS 587 (885)
T KOG2023|consen 513 PYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFP-----LLECLS 587 (885)
T ss_pred HHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHH-----HHHHHH
Confidence 999999999999887654 3566679999999999999874 4 8999999999999776555444344 589999
Q ss_pred HHHHhhh
Q 005697 408 LMAQSWE 414 (682)
Q Consensus 408 ~~~~~~~ 414 (682)
+++.+.+
T Consensus 588 sia~AL~ 594 (885)
T KOG2023|consen 588 SIASALG 594 (885)
T ss_pred HHHHHHh
Confidence 9999876
No 9
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=99.64 E-value=1.5e-13 Score=156.75 Aligned_cols=342 Identities=17% Similarity=0.167 Sum_probs=228.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhHhhhHHHHHHHHHHHHHhccccccCcccCHHHHHHHHHHHHHHhc--cCccccccc
Q 005697 18 LLRFKTGKRGLLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLE--TGPGWRLVS 95 (682)
Q Consensus 18 ~~~~K~kKw~~~~l~~l~~Ry~~~~~~f~p~il~~~l~~l~~~~~~~~~~~lsd~~i~~~~~fl~~~v~--~~~~~~ll~ 95 (682)
.-..|.|.-+..+++.+.+||..-++.+.-.|++.+|.+++.. .+....|-++...+.++..+++ .+++...+.
T Consensus 252 ~~~~~l~~~i~e~f~ly~t~yp~~it~li~dfv~~vw~~ltti----t~~~~~d~Lv~k~l~~l~~v~k~~irk~~e~l~ 327 (947)
T COG5657 252 CVYFKLKGSICEIFNLYTTKYPEVITYLIYDFVEIVWNLLTTI----TRPYIRDYLVSKSLTVLINVIKYPIRKTAEVLS 327 (947)
T ss_pred ceeeeecccHHHHHHHHhhccHHHhhHHHHHHHHHHHHHHHhh----cCccccchhhhhHHHHHHHhhccccHHHHHHHH
Confidence 4567888899999999999999998888889999999999873 2356678899999999999998 566666665
Q ss_pred c----cHHHHHHHHhhccccCChhhhhhhhhCHHHHHHhcCCCchhhhccccccccchhHHHHHHHHHHhhcCCCCCCCC
Q 005697 96 P----HFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTP 171 (682)
Q Consensus 96 p----~l~~Li~~vIfP~l~~teeD~Elwe~DP~EYIr~~~d~~~~~~~~~~ed~~S~R~aA~~lL~~L~~~~~~~~~~~ 171 (682)
+ -+..+++.++.|+++++++|+|.|++||.||+|..... +-.+..|..+.+.++.+-..+
T Consensus 328 n~~~~~~~~lvd~l~l~n~~lreed~E~~~ddp~eyire~s~~---------dye~~vr~~~~~~l~~~f~~~------- 391 (947)
T COG5657 328 NVSENLINNLVDLLILPNLILREEDLEEWEDDPLEYIREQSKT---------DYEVNVRPCIENELKDLFDVF------- 391 (947)
T ss_pred HHHHHHHHHHHHHHhhhccccCcccccccccCHHHHHHhhccc---------cchhhhhHHHHHHHHHHHHHH-------
Confidence 5 67889999999999999999999999999999966652 113456888888887751111
Q ss_pred CCCcccccccccccccccccccchhhHHHHHHHHhcCCCCCCCCCccccchhhHHHHHHHHHHHHHHHhhhcchhHHHHH
Q 005697 172 SNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLV 251 (682)
Q Consensus 172 ~~~~~~~~kr~k~~~~k~~~~~~~l~~ili~~~L~~~~~~~~~~~~~~~~~~~kegaL~~lg~la~~l~~~~~~~le~fL 251 (682)
.+. ..++ +..++.++...+ | .....+++++++-.-|.-.+.+.. .-+ ...++
T Consensus 392 ----------~~i----------~~~~--~~~~ie~~~t~P--~--~~d~~~~~~a~~a~~g~g~~av~~-~~~-~v~~~ 443 (947)
T COG5657 392 ----------GRI----------AVGH--ELTVIESEATTP--N--ILDEARQLFAAYASFGLGVEAVNR-MVD-FVKFL 443 (947)
T ss_pred ----------hhH----------hHHH--HHHHHHHHhcCc--h--HHHHHHHHHHHHHHhhhHHHHHHH-HHH-HHHHH
Confidence 111 2222 344555433221 1 233456666666555532233221 001 36889
Q ss_pred HHhhhhcccCC--CCCcccHHHHHHHHHHhhhcCChhh--H-----HHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHH
Q 005697 252 RSRVLPLYSVS--VCLPYLVASANWILGELASCLPEDI--S-----ADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVG 322 (682)
Q Consensus 252 ~~~VlP~l~~~--s~~p~LrarA~~~l~~f~~~l~~~~--l-----~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~ 322 (682)
.+...|++.++ ..++.+++|....+..+...++... . .+.+...+....|... -+-+|-++..++..
T Consensus 444 ~~~~~pd~~s~~~~~~~ri~~~~i~~i~~~r~~l~~~~~~~~~fl~~~~F~~yt~~~id~~~----lLT~~~a~~t~~~~ 519 (947)
T COG5657 444 GSIIYPDLLSPNEIIHLRILRSRIAYILTFRNQLDSSELSESKFLASQFFVNYTTACIDAVV----LLTTREAYSTIFDD 519 (947)
T ss_pred HHhcCccccCcccCceeEEehhccchheechhhhhhhhhhhHHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHh
Confidence 99999999841 2344444444445544444432221 1 2223333333333221 14444444444444
Q ss_pred hhhcC-CCCCChHHHHHHHHHhhcccc--hhhhHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHhcCCCCCCChhhH
Q 005697 323 LLEND-YMPPEWYPLLQVIVGRIGYED--EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVV 399 (682)
Q Consensus 323 ~l~~~-~l~p~l~~llq~Ll~~L~~e~--~e~d~l~~~L~~iVe~~~e~i~P~a~~L~~~L~~~f~k~~~~~~~~~~~~~ 399 (682)
+.-.. ...+-+.+++-.+++.++... ++++.+++++++++..-++.++|-++++.+.|.+.+....+++.+ |++.
T Consensus 520 ~n~~~~~~~~~lenl~~lvl~~~as~~~~~e~~~ll~~i~rii~~~~~~i~pl~~~il~~L~~lv~~~~knps~--p~~~ 597 (947)
T COG5657 520 WNFSVCSKIGLLENLILLVLSLMASPSSLEEREFLLQLISRIIIIDPELIAPLGSEILQLLDNLVEINAKNPSN--PQFA 597 (947)
T ss_pred cccccccccccHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhCHHhhhhhHHHHHHHHHHHHHHHccCCcc--HHHH
Confidence 44333 333344455545555333222 489999999999999999999999999999999999888888876 5899
Q ss_pred HhHHHHHHHHHHhh
Q 005697 400 ERGFAALALMAQSW 413 (682)
Q Consensus 400 ~~~~~aLa~~~~~~ 413 (682)
|+-|+.+++++...
T Consensus 598 h~~fe~I~al~~~~ 611 (947)
T COG5657 598 HYTFEDIGALVFLK 611 (947)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999888854
No 10
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=99.62 E-value=7.8e-15 Score=162.52 Aligned_cols=260 Identities=13% Similarity=0.103 Sum_probs=178.7
Q ss_pred cCCCCCChHHHHHHHHHhhcccc-hhhhHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHhcCCCCCCChhhHHhHHH
Q 005697 326 NDYMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFA 404 (682)
Q Consensus 326 ~~~l~p~l~~llq~Ll~~L~~e~-~e~d~l~~~L~~iVe~~~e~i~P~a~~L~~~L~~~f~k~~~~~~~~~~~~~~~~~~ 404 (682)
-+.+.|++.++++.|++.+.... .|||++|+++++++...+|.+.|++..++++|+..+...+++|.+ |.++|+.|+
T Consensus 17 ~~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsn--P~FnHylFE 94 (435)
T PF03378_consen 17 KADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSN--PRFNHYLFE 94 (435)
T ss_dssp GGGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS-----HHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCC--cchhhhHHH
Confidence 35899999999999999776654 589999999999999999999999999999999999999888775 799999999
Q ss_pred HHHHHHHhhhhhchhhhhhhccCCccchhHhHHHHHHHHHHHhhhhhcccccccccCCCcchHHhHHHHHHHHHhhcCch
Q 005697 405 ALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSER 484 (682)
Q Consensus 405 aLa~~~~~~~~~~~~~~~~~~~~d~~~~~~~a~L~ti~tllq~~~~~~~~e~~~s~~~~~~~~~~le~~l~~vi~~i~~~ 484 (682)
++|++.+...+.+|+ .+..+|+.+.|++..|
T Consensus 95 si~~lir~~~~~~~~----------------------------------------------~v~~~E~~L~P~f~~I--- 125 (435)
T PF03378_consen 95 SIGALIRFVCEADPE----------------------------------------------AVSQFEEALFPPFQEI--- 125 (435)
T ss_dssp HHHHHHHHS-GGGHH-------------------------------------------------HHHHHHHHHHHHH---
T ss_pred HHHHHHHhccCCChh----------------------------------------------HHHHHHHHHHHHHHHH---
Confidence 999888865444443 2233555555555555
Q ss_pred hHHHhhhHHHHHHHHHHHH--------------hcccchhhhh-----hchHHHHHHHHHhhhccccccccccccCCCCC
Q 005697 485 NVIEELKLSELLLVWADLI--------------GDWHAWEETE-----DLSVFDCIKEIVNLHSKYELKNFIVRQMPPPP 545 (682)
Q Consensus 485 ~~~l~~~~~~~l~e~~~li--------------~~W~~~e~~~-----~~~~~dyl~evi~l~~~~~L~Nfi~~g~~~~~ 545 (682)
+++++.||+..+++++ .-|.+|+.+. +..| .+--++. -|.+||.+++..+.
T Consensus 126 ---Lq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~g--niPalvr-----LL~a~i~k~~~~i~ 195 (435)
T PF03378_consen 126 ---LQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRG--NIPALVR-----LLQAYIKKDPSFIV 195 (435)
T ss_dssp ---HHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTT--THHHHHH-----HHHHHHHHHGGG--
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCC--CcCcHHH-----HHHHHHHhCchhhc
Confidence 5555555555555554 1222222221 1223 5566676 68999999999885
Q ss_pred CCCCChhHHHHHHHHHHhhhhhcCchhHHHHhHhHHHHhhcccccccccccchhhHHHHHHHHHhhhhhhcCCCCcchHh
Q 005697 546 APPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKP 625 (682)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ac~~~~~ll~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~ 625 (682)
++ .+.+.+++++.+.+++... ..-|+++.++++ ..+.. ...++|++.+..+.+.|+++ +++..|.+-
T Consensus 196 ~~-~~l~~iLgvFQkLi~sk~~-----D~~gF~LL~~iv----~~~p~-~~l~~yl~~I~~lll~RLq~--skT~kf~~~ 262 (435)
T PF03378_consen 196 AN-NQLEPILGVFQKLIASKAN-----DHYGFDLLESIV----ENLPP-EALEPYLKQIFTLLLTRLQS--SKTEKFVKR 262 (435)
T ss_dssp ---S-CHHHHHHHHHHHT-TTC-----HHHHHHHHHHHH----HHS-H-HHHGGGHHHHHHHHHHHHHH--C--HHHHHH
T ss_pred ch-hhHHHHHHHHHHHHCCCCc-----chHHHHHHHHHH----HHCCH-HHHHHHHHHHHHHHHHHHhh--CCcHHHHHH
Confidence 55 6889999999988865432 133889999888 44443 25689999999999999985 555566665
Q ss_pred HHHHH-HHhhccChHHHHHHHhhcCcccHHHHHHH
Q 005697 626 VVLAI-SSCYLCYPAVVEGILKKDEDGGFALWGSA 659 (682)
Q Consensus 626 ~~~vi-~~~~~~~p~~~~~~L~~~~~~~~~~w~~~ 659 (682)
++..+ ..+..++|+...+.+++-+.+-|..+.+.
T Consensus 263 fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~ 297 (435)
T PF03378_consen 263 FVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEK 297 (435)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHH
Confidence 54432 22344589999999998887767776665
No 11
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=2.2e-06 Score=97.42 Aligned_cols=344 Identities=16% Similarity=0.201 Sum_probs=214.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhHhhhHHH-HHHHHHHHHHhccccccCcccCHHHHHHHHHHHHHHhccCcc------
Q 005697 18 LLRFKTGKRGLLIFSALVTRHRKFSDKLMPD-IMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPG------ 90 (682)
Q Consensus 18 ~~~~K~kKw~~~~l~~l~~Ry~~~~~~f~p~-il~~~l~~l~~~~~~~~~~~lsd~~i~~~~~fl~~~v~~~~~------ 90 (682)
.|--+.+--|+.+|+|+.+=|-+|+..||.+ ++..+++-... -.|.+..++++|-+++.+.+--
T Consensus 228 ~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks---------~~deValQaiEFWsticeEEiD~~~e~~ 298 (859)
T KOG1241|consen 228 SPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKS---------DNDEVALQAIEFWSTICEEEIDLAIEYG 298 (859)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---------CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446778889999999999999999999876 66766665553 1378999999999977654221
Q ss_pred --c-ccccc---cH-HHHHHHHhhccccCChhhhhhhhhCHHHHHHhcCCCchhhhccccccccchhHHHHHHHHHHhhc
Q 005697 91 --W-RLVSP---HF-SVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVS 163 (682)
Q Consensus 91 --~-~ll~p---~l-~~Li~~vIfP~l~~teeD~Elwe~DP~EYIr~~~d~~~~~~~~~~ed~~S~R~aA~~lL~~L~~~ 163 (682)
- +-..| ++ ..-+.+ +.|.+. ++ +.++.|.+ .+|..+|-.||...|.-++
T Consensus 299 e~~d~~~~p~~~~fa~~a~~~-v~P~Ll------~~--------L~kqde~~-------d~DdWnp~kAAg~CL~l~A-- 354 (859)
T KOG1241|consen 299 EAVDQGLPPSSKYFARQALQD-VVPVLL------EL--------LTKQDEDD-------DDDDWNPAKAAGVCLMLFA-- 354 (859)
T ss_pred HHhhcCCCchhhHHHHHHHhH-hhHHHH------HH--------HHhCCCCc-------ccccCcHHHHHHHHHHHHH--
Confidence 0 01112 11 112222 234332 11 11111100 3456799999999998752
Q ss_pred CCCCCCCCCCCcccccccccccccccccccchhhHHHHHHHHhcCCCCCCCCCccccchhhHHHHHHHHHHHHHHHhhh-
Q 005697 164 KGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQ- 242 (682)
Q Consensus 164 ~~~~~~~~~~~~~~~~kr~k~~~~k~~~~~~~l~~ili~~~L~~~~~~~~~~~~~~~~~~~kegaL~~lg~la~~l~~~- 242 (682)
+--+.. .+.+ |.+++.+.... .+|+.+|+|.+++|++=+.-...
T Consensus 355 ---------------~~~~D~----------Iv~~--Vl~Fiee~i~~--------pdwr~reaavmAFGSIl~gp~~~~ 399 (859)
T KOG1241|consen 355 ---------------QCVGDD----------IVPH--VLPFIEENIQN--------PDWRNREAAVMAFGSILEGPEPDK 399 (859)
T ss_pred ---------------HHhccc----------chhh--hHHHHHHhcCC--------cchhhhhHHHHHHHhhhcCCchhh
Confidence 211121 5654 55777764332 37999999999999976553221
Q ss_pred cchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhc-----CChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHH
Q 005697 243 KSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASC-----LPEDISADVYSSLLKALQMLDKGDTSCYPVRASAA 317 (682)
Q Consensus 243 ~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~-----l~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa 317 (682)
-++.+.+-+ +.++-... ++.-+.|..+.|.+|+.++. .+.+.+...++.++..|+|. +.|-.-+|
T Consensus 400 Lt~iV~qal-p~ii~lm~--D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De-------Prva~N~C 469 (859)
T KOG1241|consen 400 LTPIVIQAL-PSIINLMS--DPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE-------PRVASNVC 469 (859)
T ss_pred hhHHHhhhh-HHHHHHhc--CchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC-------chHHHHHH
Confidence 122333332 23344445 67888999999999999885 35778899999999999875 78889999
Q ss_pred HHHHHhhhc-----------CCCCCChHHHHHHHHHhhcccc--hhh---hHHHHHHHHHHHHhhhhhhchHHHHHHHHH
Q 005697 318 GAIVGLLEN-----------DYMPPEWYPLLQVIVGRIGYED--EEN---SILFELLSSVVGAANENVADHIPYIVSSLV 381 (682)
Q Consensus 318 ~AL~~~l~~-----------~~l~p~l~~llq~Ll~~L~~e~--~e~---d~l~~~L~~iVe~~~e~i~P~a~~L~~~L~ 381 (682)
.|+.+|.++ +...|+-++++..|++ ..+.. +++ ....++|+++|..-.+.+.|.... +.
T Consensus 470 WAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~-~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~----~~ 544 (859)
T KOG1241|consen 470 WAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLK-VTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQK----LT 544 (859)
T ss_pred HHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHh-hccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHH----HH
Confidence 999999875 2456889999999999 54442 221 225889999999988887774322 22
Q ss_pred HHHHHhcCCCCCCChhhHHhHHHHHHHHHHhhhhhchhhhhhhccCCccchhHhHHHHHHHHHHHhhhhhcccccccccC
Q 005697 382 AAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVS 461 (682)
Q Consensus 382 ~~f~k~~~~~~~~~~~~~~~~~~aLa~~~~~~~~~~~~~~~~~~~~d~~~~~~~a~L~ti~tllq~~~~~~~~e~~~s~~ 461 (682)
.+.+.-+... +. .+..+-.+ .++..+-+..+..++..|+|+ ...
T Consensus 545 l~il~kl~q~--------------i~--~~~l~~~d---------r~q~~eLQs~Lc~~Lq~i~rk-----------~~~ 588 (859)
T KOG1241|consen 545 LVILEKLDQT--------------IS--SQILSLAD---------RAQLNELQSLLCNTLQSIIRK-----------VGS 588 (859)
T ss_pred HHHHHHHHHH--------------HH--HHhccHhh---------HHHHHHHHHHHHHHHHHHHHH-----------ccc
Confidence 2222211100 00 00000011 111233455577777777763 333
Q ss_pred CCcchHHhHHHHHHHHHhh
Q 005697 462 APPSCIDDSSMLLRSIILS 480 (682)
Q Consensus 462 ~~~~~~~~le~~l~~vi~~ 480 (682)
.-++.-+++-.+|..++++
T Consensus 589 ~~~~~~d~iM~lflri~~s 607 (859)
T KOG1241|consen 589 DIREVSDQIMGLFLRIFES 607 (859)
T ss_pred cchhHHHHHHHHHHHHHcC
Confidence 5566667777777888887
No 12
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=7.1e-07 Score=105.58 Aligned_cols=349 Identities=14% Similarity=0.111 Sum_probs=212.6
Q ss_pred HHHHHHHHHHHHHHHhh---h---hHhhhHHHHHHHHHHHHHhccccccCcccCHHHHHHHHHHHHHHhccCcccccccc
Q 005697 23 TGKRGLLIFSALVTRHR---K---FSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLVSP 96 (682)
Q Consensus 23 ~kKw~~~~l~~l~~Ry~---~---~~~~f~p~il~~~l~~l~~~~~~~~~~~lsd~~i~~~~~fl~~~v~~~~~~~ll~p 96 (682)
+|--+.+.+..++.-.. + .+...+|.++++.=..+.. + .+.....+|+-|.+.++..+ ++++|
T Consensus 175 vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~------~---d~~~a~~~l~~l~El~e~~p--k~l~~ 243 (1075)
T KOG2171|consen 175 VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQD------G---DDDAAKSALEALIELLESEP--KLLRP 243 (1075)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhc------c---chHHHHHHHHHHHHHHhhch--HHHHH
Confidence 55556666666665442 1 2334456555555444442 1 14567888899999888866 89999
Q ss_pred cHHHHHHHHhhccccCChhhhhhhhhCHHHHHHhcCCCchhhhccccccccchhHHHHHHHHHHhhcCCCCCCCCCCCcc
Q 005697 97 HFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSNCSS 176 (682)
Q Consensus 97 ~l~~Li~~vIfP~l~~teeD~Elwe~DP~EYIr~~~d~~~~~~~~~~ed~~S~R~aA~~lL~~L~~~~~~~~~~~~~~~~ 176 (682)
|+.++++... . |.++-+ . ..+.|..|..+|..+++..+
T Consensus 244 ~l~~ii~~~l----~----------------Ia~n~~---------l--~~~~R~~ALe~ivs~~e~Ap----------- 281 (1075)
T KOG2171|consen 244 HLSQIIQFSL----E----------------IAKNKE---------L--ENSIRHLALEFLVSLSEYAP----------- 281 (1075)
T ss_pred HHHHHHHHHH----H----------------Hhhccc---------c--cHHHHHHHHHHHHHHHHhhH-----------
Confidence 9999998652 1 122222 1 23689999999999866622
Q ss_pred cccccccccccccccccchhhHHH--HHHHHhcCCCCC-CCCC---ccccchhhHHHHHHHHHHHHHHHhhhcchhHHHH
Q 005697 177 VSSKRKKGEKSKRNSMRSTMGELL--VLPFLSRFPIPC-DANA---SHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANL 250 (682)
Q Consensus 177 ~~~kr~k~~~~k~~~~~~~l~~il--i~~~L~~~~~~~-~~~~---~~~~~~~~kegaL~~lg~la~~l~~~~~~~le~f 250 (682)
.+.||.. ...++++ +..+...-.... -.|. ++...--.+..|..++..+|-.|.. .++-+.
T Consensus 282 -~~~k~~~---------~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g---~~v~p~ 348 (1075)
T KOG2171|consen 282 -AMCKKLA---------LLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGG---KQVLPP 348 (1075)
T ss_pred -HHhhhch---------hhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCCh---hhehHH
Confidence 1112222 1222221 222222211110 0000 0111123477888899888888752 345566
Q ss_pred HHHhhhhcccCCCCCcccHHHHHHHHHHhhhc-CC--hhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhcC
Q 005697 251 VRSRVLPLYSVSVCLPYLVASANWILGELASC-LP--EDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND 327 (682)
Q Consensus 251 L~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~-l~--~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~ 327 (682)
+.+++--.++ |+..+-|..|...+|..++- -+ ..++.++++.+++.|+||+ +.||-.|+.||.++-.+
T Consensus 349 ~~~~l~~~l~--S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dph------prVr~AA~naigQ~std- 419 (1075)
T KOG2171|consen 349 LFEALEAMLQ--STEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPH------PRVRYAALNAIGQMSTD- 419 (1075)
T ss_pred HHHHHHHHhc--CCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCC------HHHHHHHHHHHHhhhhh-
Confidence 6667666777 89999999999999999984 22 4589999999999999999 99999999999998773
Q ss_pred CCCCChHH-----HHHHHHHhhcccc---hhhhHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHhcCCCCCCChhhH
Q 005697 328 YMPPEWYP-----LLQVIVGRIGYED---EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVV 399 (682)
Q Consensus 328 ~l~p~l~~-----llq~Ll~~L~~e~---~e~d~l~~~L~~iVe~~~e~i~P~a~~L~~~L~~~f~k~~~~~~~~~~~~~ 399 (682)
++|.+.. +.-.|+..+.... -.......++.-..+.-++.+.||.+.|++++...+. .+.. +.+.
T Consensus 420 -l~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~---~~~~---~~v~ 492 (1075)
T KOG2171|consen 420 -LQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLL---QSSK---PYVQ 492 (1075)
T ss_pred -hcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHh---cCCc---hhHH
Confidence 2222111 1112222222221 0233334445555677778899999999998555442 2222 5799
Q ss_pred HhHHHHHHHHHHhhh-hhchh-------hhh--hhcc--CCcc-chhHhHHHHHHHHHHHhhhhhcc
Q 005697 400 ERGFAALALMAQSWE-NFLRE-------EVE--LDQS--SGKW-ESGQAAIAKAFSALLQQAWLTHI 453 (682)
Q Consensus 400 ~~~~~aLa~~~~~~~-~~~~~-------~~~--~~~~--~d~~-~~~~~a~L~ti~tllq~~~~~~~ 453 (682)
+.+.++||++|.+.+ .+.|. ... ++.. +... ..|.|-|+.+|+..|.+.-+-|+
T Consensus 493 e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~ 559 (1075)
T KOG2171|consen 493 EQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPL 559 (1075)
T ss_pred HHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHh
Confidence 999999999999876 22232 111 1111 1111 23345599999999987665554
No 13
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.84 E-value=2.1e-05 Score=87.07 Aligned_cols=273 Identities=16% Similarity=0.182 Sum_probs=168.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHhhhHHHHHHHHHHHHHhccccccCcccCHHHHHHHHHHHHHHhccCccccccc---c-
Q 005697 21 FKTGKRGLLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLVS---P- 96 (682)
Q Consensus 21 ~K~kKw~~~~l~~l~~Ry~~~~~~f~p~il~~~l~~l~~~~~~~~~~~lsd~~i~~~~~fl~~~v~~~~~~~ll~---p- 96 (682)
-....-++.+++|+..=|-+|+..||.+.|-.+...--++ -.|.+..++++|-+++.+.+.--.+-. |
T Consensus 235 ~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks--------~nd~va~qavEfWsticeEeid~~~e~~~~pe 306 (858)
T COG5215 235 EELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKS--------QNDEVAIQAVEFWSTICEEEIDGEMEDKYLPE 306 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------cchHHHHHHHHHHHHHHHHHhhhHHHHhhccc
Confidence 3456678999999999998887777766555553333221 248899999999988877543222111 1
Q ss_pred -----c-H-HHHHHHHhhccccCChhhhhhhhhCHHHHHHhcCCCchhhhccccccccchhHHHHHHHHHHhhcCCCCCC
Q 005697 97 -----H-F-SVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMG 169 (682)
Q Consensus 97 -----~-l-~~Li~~vIfP~l~~teeD~Elwe~DP~EYIr~~~d~~~~~~~~~~ed~~S~R~aA~~lL~~L~~~~~~~~~ 169 (682)
| | ..-+.. |+|.+- .+.+. ++-|. ++|..+|..||...|.-.
T Consensus 307 ~p~qn~~fa~aav~d-vlP~lL------~LL~~-------q~ed~--------~~DdWn~smaA~sCLqlf--------- 355 (858)
T COG5215 307 VPAQNHGFARAAVAD-VLPELL------SLLEK-------QGEDY--------YGDDWNPSMAASSCLQLF--------- 355 (858)
T ss_pred CchhhcchHHHHHHH-HHHHHH------HHHHh-------cCCCc--------cccccchhhhHHHHHHHH---------
Confidence 1 0 001111 233221 11111 01122 445678999999998875
Q ss_pred CCCCCcccccccccccccccccccchhhHHHHHHHHhcCCCCCCCCCccccchhhHHHHHHHHHHHHHHHhhhcchhHHH
Q 005697 170 TPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTAN 249 (682)
Q Consensus 170 ~~~~~~~~~~kr~k~~~~k~~~~~~~l~~ili~~~L~~~~~~~~~~~~~~~~~~~kegaL~~lg~la~~l~~~~~~~le~ 249 (682)
....+. +.+.|+ ..++.+. . +.++|+.+|++.+++|++-+.=. .+.+ .
T Consensus 356 --------aq~~gd----------~i~~pV--l~FvEqn--i------~~~~w~nreaavmAfGSvm~gp~---~~~l-T 403 (858)
T COG5215 356 --------AQLKGD----------KIMRPV--LGFVEQN--I------RSESWANREAAVMAFGSVMHGPC---EDCL-T 403 (858)
T ss_pred --------HHHhhh----------HhHHHH--HHHHHHh--c------cCchhhhHHHHHHHhhhhhcCcc---HHHH-H
Confidence 222122 267764 4566552 1 34589999999999998654311 1111 1
Q ss_pred HHHHhhhhcccC--CCCCcccHHHHHHHHHHhhhc----C-ChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHH
Q 005697 250 LVRSRVLPLYSV--SVCLPYLVASANWILGELASC----L-PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVG 322 (682)
Q Consensus 250 fL~~~VlP~l~~--~s~~p~LrarA~~~l~~f~~~----l-~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~ 322 (682)
.+.+..+|.+-+ +++.-+.+.++.|++|+.++. + |...+....++.+..|.|. +-+-+.-+.+..+
T Consensus 404 ~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~-------p~~~~ncsw~~~n 476 (858)
T COG5215 404 KIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDC-------PFRSINCSWRKEN 476 (858)
T ss_pred hhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhcc-------chHHhhhHHHHHh
Confidence 122222333221 268889999999999999985 3 4567777777777777653 4444566678888
Q ss_pred hhhc---------CCCCCChHHHHHHHHHhhcccc-hh-h--hHHHHHHHHHHHHhhhhhhch
Q 005697 323 LLEN---------DYMPPEWYPLLQVIVGRIGYED-EE-N--SILFELLSSVVGAANENVADH 372 (682)
Q Consensus 323 ~l~~---------~~l~p~l~~llq~Ll~~L~~e~-~e-~--d~l~~~L~~iVe~~~e~i~P~ 372 (682)
|.+| +.+.|+-+.++..|++ -.+.. +| | ..++.+|.++|....+.+.|.
T Consensus 477 lv~h~a~a~~~~~S~l~~fY~ai~~~Lv~-~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~ 538 (858)
T COG5215 477 LVDHIAKAVREVESFLAKFYLAILNALVK-GTELALNESNLRVSLFSALGTLILICPDAVSDI 538 (858)
T ss_pred HHHhhhhhhccccchhHHHHHHHHHHHHH-HHHhhccchhHHHHHHHHHHHHHhhcchhHHHH
Confidence 8886 2677888889988888 33333 22 2 236889999998888777663
No 14
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=0.0029 Score=73.77 Aligned_cols=333 Identities=13% Similarity=0.184 Sum_probs=207.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhh-----------------hHhhhHHHHHHHH-----H-------HHHHhcccccc----C
Q 005697 20 RFKTGKRGLLIFSALVTRHRK-----------------FSDKLMPDIMNSV-----L-------QIVKYSANISK----L 66 (682)
Q Consensus 20 ~~K~kKw~~~~l~~l~~Ry~~-----------------~~~~f~p~il~~~-----l-------~~l~~~~~~~~----~ 66 (682)
.|+.--|.+...++.++...+ ..++.+|.+++++ + +.+-.-+.-.+ .
T Consensus 290 li~i~~~~l~e~~~~~~~~e~~d~~~e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypve 369 (982)
T KOG2022|consen 290 LISICLGILQEVSGKIQEEENADASEEEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVE 369 (982)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHH
Confidence 467777777777777655432 3567788777776 1 11111111111 2
Q ss_pred cccCHHHHHHHH----HHHHHHhccCcccc-cc-cccHHHHHHHHhhccccCChhhhhhhhhCHHHHHHhcCCCchhhhc
Q 005697 67 DFLQERIISLAF----DVISHVLETGPGWR-LV-SPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEIS 140 (682)
Q Consensus 67 ~~lsd~~i~~~~----~fl~~~v~~~~~~~-ll-~p~l~~Li~~vIfP~l~~teeD~Elwe~DP~EYIr~~~d~~~~~~~ 140 (682)
+..|++.+.+=. +|+...-++-+.++ .+ +|-+..+++..+=-....++|..-.|+.|.-|
T Consensus 370 E~~S~~~l~FW~tL~dei~~~~~e~~~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s~e-------------- 435 (982)
T KOG2022|consen 370 EIVSDRTLIFWYTLQDEIMQTINETQQIKKQILSQQIYAQLVEILLKKLALPSKEIWLSWSSDSRE-------------- 435 (982)
T ss_pred HHHhHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcchHH--------------
Confidence 223455443322 23333333333332 23 47788888877533334445555667665422
Q ss_pred cccccccchhHHHHHHHHHHhhcCCCCCCCCCCCcccccccccccccccccccchhhHHHHHHHHhcCCCCCCCCCcccc
Q 005697 141 GWREDLFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSR 220 (682)
Q Consensus 141 ~~~ed~~S~R~aA~~lL~~L~~~~~~~~~~~~~~~~~~~kr~k~~~~k~~~~~~~l~~ili~~~L~~~~~~~~~~~~~~~ 220 (682)
.+.+-|+.-.|++... -.--+.. ++. ++...+.++..+.+. +..
T Consensus 436 ----~F~~YR~diSD~~~~~-----------------Y~ilgd~----------ll~--~L~~~l~q~~aa~d~---~p~ 479 (982)
T KOG2022|consen 436 ----QFESYRKDISDLLMSS-----------------YSILGDG----------LLD--FLIDTLEQALAAGDE---DPD 479 (982)
T ss_pred ----HHHHHHHHHHHHHHHH-----------------HHHHhHH----------HHH--HHHHHHHHhhhccCC---Cch
Confidence 2335587777877762 1100111 232 245566665544432 345
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcC--ChhhHHHHHHHHHHh
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCL--PEDISADVYSSLLKA 298 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l--~~~~l~~il~~ll~~ 298 (682)
.|..-|++++.+-++++.+....++.+...+.. .+..+.+.++|=|-+.+-..+|.+++.+ .|..+...++.++++
T Consensus 480 s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~--~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~ 557 (982)
T KOG2022|consen 480 SLNRTEACIFQFQSVAEYLGETESTWIPRLFET--SASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQG 557 (982)
T ss_pred HHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHh--ccccccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHH
Confidence 799999999999999999876555555555543 3444432467888888999999999985 688899999999999
Q ss_pred hccCCCCCCCCcchhHHHHHHHHHhhhc--CCCCCChHHHHHHHHHhhccc--c-hhhhHHHHHHHHHHHHhhhh-hhch
Q 005697 299 LQMLDKGDTSCYPVRASAAGAIVGLLEN--DYMPPEWYPLLQVIVGRIGYE--D-EENSILFELLSSVVGAANEN-VADH 372 (682)
Q Consensus 299 L~d~~~~~~~~~pVrv~Aa~AL~~~l~~--~~l~p~l~~llq~Ll~~L~~e--~-~e~d~l~~~L~~iVe~~~e~-i~P~ 372 (682)
|..+. --.+|...|+.+|+. +.+.||+.+++..+=..++.. . .+...+++.+.-++.+..-| +..|
T Consensus 558 Lh~sk--------~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~ky 629 (982)
T KOG2022|consen 558 LHNSK--------ESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKY 629 (982)
T ss_pred hcCch--------HHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHH
Confidence 97655 237888889999997 589999999887666644432 2 35666788888888877755 4449
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCChhhHHh----HHHHHHHHHHhhh
Q 005697 373 IPYIVSSLVAAISKHMHPSSEPWPQVVER----GFAALALMAQSWE 414 (682)
Q Consensus 373 a~~L~~~L~~~f~k~~~~~~~~~~~~~~~----~~~aLa~~~~~~~ 414 (682)
.-.|++.+.+++-..+.+..+. +-+++ .+.+++++.++..
T Consensus 630 l~~lin~il~qle~~l~~~i~~--~e~~l~~~~~l~~iS~LftSL~ 673 (982)
T KOG2022|consen 630 LMKLINPILSQLEINLAPGIDD--QENHLRIAFQLNTISALFTSLI 673 (982)
T ss_pred HHHHHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999998876655443 22222 2455666666543
No 15
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=5.9e-05 Score=84.89 Aligned_cols=210 Identities=17% Similarity=0.132 Sum_probs=141.0
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccC--CCCCcccHHHHHHHHHHhhh-cCC--hhhHHHHHHHH
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSV--SVCLPYLVASANWILGELAS-CLP--EDISADVYSSL 295 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~--~s~~p~LrarA~~~l~~f~~-~l~--~~~l~~il~~l 295 (682)
.|..+...--+++.++....+. + ..+++|.+.. .+..=+.|-.+.-.+|-.++ |++ -..+..+++-+
T Consensus 368 dWNLRkCSAAaLDVLanvf~~e----l----L~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l 439 (885)
T KOG2023|consen 368 DWNLRKCSAAALDVLANVFGDE----L----LPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFL 439 (885)
T ss_pred cccHhhccHHHHHHHHHhhHHH----H----HHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHH
Confidence 3777766667788888776531 1 1233444432 14556888899999999998 554 45788999999
Q ss_pred HHhhccCCCCCCCCcchhHHHHHHHHHhhhc---CCCCCChHHHHHHHHHhhcccc-hhhhHHHHHHHHHHHHhhhhhhc
Q 005697 296 LKALQMLDKGDTSCYPVRASAAGAIVGLLEN---DYMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANENVAD 371 (682)
Q Consensus 296 l~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~---~~l~p~l~~llq~Ll~~L~~e~-~e~d~l~~~L~~iVe~~~e~i~P 371 (682)
+++|.|.. .+||.-.|=.|.+|-.. +.=.-++.|+|+.+++.+.... .--|..-.+..++-|..++++.|
T Consensus 440 ~~~L~DKk------plVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp 513 (885)
T KOG2023|consen 440 LSLLDDKK------PLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVP 513 (885)
T ss_pred HHHhccCc------cceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHH
Confidence 99999887 89999999999998663 2212345556666666543322 24566778888999999999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCChhhHHhHHHHHHHHHHhhhhhc--h--------hhhh-hhccCCccchhHhH----
Q 005697 372 HIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFL--R--------EEVE-LDQSSGKWESGQAA---- 436 (682)
Q Consensus 372 ~a~~L~~~L~~~f~k~~~~~~~~~~~~~~~~~~aLa~~~~~~~~~~--~--------~~~~-~~~~~d~~~~~~~a---- 436 (682)
|...|.++|+-+|.|+-+.+.- + ..+|++.+|.+.+..- | -..+ -..-+| +||...
T Consensus 514 ~l~~IL~~l~~af~kYQ~KNLl----I---LYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd--~DKdLfPLLE 584 (885)
T KOG2023|consen 514 YLEYILDQLVFAFGKYQKKNLL----I---LYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSD--SDKDLFPLLE 584 (885)
T ss_pred HHHHHHHHHHHHHHHHhhccee----h---HHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCc--ccchHHHHHH
Confidence 9999999999999998666542 3 4566666666654221 1 1111 001111 455544
Q ss_pred HHHHHHHHHHhhhhhcc
Q 005697 437 IAKAFSALLQQAWLTHI 453 (682)
Q Consensus 437 ~L~ti~tllq~~~~~~~ 453 (682)
|+..+.+.|+.+.+++.
T Consensus 585 ClSsia~AL~~gF~P~~ 601 (885)
T KOG2023|consen 585 CLSSIASALGVGFLPYA 601 (885)
T ss_pred HHHHHHHHHhccccccC
Confidence 88888888875444333
No 16
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.0056 Score=72.32 Aligned_cols=72 Identities=17% Similarity=0.139 Sum_probs=56.5
Q ss_pred chHHhHHHHHHHHHhhc--CchhHHHhhhHHHHHHHHHHHHhcccchhhhhhchHHHHHHHHHhhhccccccccc
Q 005697 465 SCIDDSSMLLRSIILSV--SERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFI 537 (682)
Q Consensus 465 ~~~~~le~~l~~vi~~i--~~~~~~l~~~~~~~l~e~~~li~~W~~~e~~~~~~~~dyl~evi~l~~~~~L~Nfi 537 (682)
+++++++++++++.+|+ ++..+....+...-+.++++.+.+-+.+++.+.+.| -.+.|++.|+|||.+|+||
T Consensus 694 ~~~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a-~kLle~iiL~~kg~~dq~i 767 (1010)
T KOG1991|consen 694 DGIDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDCESA-CKLLEVIILNCKGLLDQYI 767 (1010)
T ss_pred hhHHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHHHHH-HHHHHHHHHHhcCcHhhHh
Confidence 56899999999999994 445555555677888888888888888777665533 2899999999999988754
No 17
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.02 Score=66.07 Aligned_cols=181 Identities=20% Similarity=0.261 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHHHhhhc-chhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcC----Chh----hHHHHHHHH
Q 005697 225 YFGVLMAYGGLQEFLREQK-SEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCL----PED----ISADVYSSL 295 (682)
Q Consensus 225 kegaL~~lg~la~~l~~~~-~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l----~~~----~l~~il~~l 295 (682)
||++=..+|.+++.+.+.. .....+-..+..+..++ ..|+.-..+||.+--|++.. +.. ....+|+.+
T Consensus 423 kdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~---DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~i 499 (859)
T KOG1241|consen 423 KDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN---DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAI 499 (859)
T ss_pred cchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh---hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHH
Confidence 4999999999999998632 11122222233334444 78999999999999998741 111 233577777
Q ss_pred HHhhcc-CCCCCCCCcchhHHHHHHHHHhhhcC--CCCC----ChHHHHHHHHHhhc-----ccc----hh-hhHHHHHH
Q 005697 296 LKALQM-LDKGDTSCYPVRASAAGAIVGLLEND--YMPP----EWYPLLQVIVGRIG-----YED----EE-NSILFELL 358 (682)
Q Consensus 296 l~~L~d-~~~~~~~~~pVrv~Aa~AL~~~l~~~--~l~p----~l~~llq~Ll~~L~-----~e~----~e-~d~l~~~L 358 (682)
++.|.. .+..+-..--.|++|-.||..++.+. ..-| ...-++.+|=+.++ -++ +| -+.|..+|
T Consensus 500 i~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~L 579 (859)
T KOG1241|consen 500 IGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTL 579 (859)
T ss_pred HHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHH
Confidence 766632 11111123679999999999999973 2222 22233333333222 111 12 22357788
Q ss_pred HHHHHHhhhhhhchHHHHHHHHHHHHHHhcCCCCCCChhhHHhHHHHHHHHHHhhh
Q 005697 359 SSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWE 414 (682)
Q Consensus 359 ~~iVe~~~e~i~P~a~~L~~~L~~~f~k~~~~~~~~~~~~~~~~~~aLa~~~~~~~ 414 (682)
+.++.+++..+.+++.+||..+.+.|-+ .+. .-+-+++|-++++++...+
T Consensus 580 q~i~rk~~~~~~~~~d~iM~lflri~~s--~~s----~~v~e~a~laV~tl~~~Lg 629 (859)
T KOG1241|consen 580 QSIIRKVGSDIREVSDQIMGLFLRIFES--KRS----AVVHEEAFLAVSTLAESLG 629 (859)
T ss_pred HHHHHHccccchhHHHHHHHHHHHHHcC--Ccc----ccchHHHHHHHHHHHHHHh
Confidence 9999999998888888888877777644 111 2466788999988888765
No 18
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.07 E-value=0.32 Score=57.77 Aligned_cols=145 Identities=19% Similarity=0.215 Sum_probs=104.9
Q ss_pred HHHHHHHHHhhhcchh---HHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCCC
Q 005697 231 AYGGLQEFLREQKSEF---TANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDT 307 (682)
Q Consensus 231 ~lg~la~~l~~~~~~~---le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~d~~~~~~ 307 (682)
.+..+++.+.+. .+. +..-+.+..+|-++ ++.--+|.|||..+|..+...+.+.+..+.+.+++.|..+.+
T Consensus 153 ~lDil~d~lsr~-g~ll~~fh~~il~~l~~ql~--s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q--- 226 (1233)
T KOG1824|consen 153 VLDILADVLSRF-GTLLPNFHLSILKCLLPQLQ--SPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQ--- 226 (1233)
T ss_pred HHHHHHHHHHhh-cccCcchHHHHHHHHhhccc--ChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCc---
Confidence 445555665442 112 33444456788888 788899999999999999988999999999999999987652
Q ss_pred CCcchhHHHHHHHHHhhhc-----CCCCCChHHHHHHHHHhhcccc-hh-hhHHHHHHHHHHHHhhhhhhchHHHHHHHH
Q 005697 308 SCYPVRASAAGAIVGLLEN-----DYMPPEWYPLLQVIVGRIGYED-EE-NSILFELLSSVVGAANENVADHIPYIVSSL 380 (682)
Q Consensus 308 ~~~pVrv~Aa~AL~~~l~~-----~~l~p~l~~llq~Ll~~L~~e~-~e-~d~l~~~L~~iVe~~~e~i~P~a~~L~~~L 380 (682)
.--+|++ ..+|...++. +.=.+.+.|++..+.+.. ++. +| -++..++++.++.+-..+|.||.+++.+.+
T Consensus 227 -~~~~rt~-Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~-e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~ 303 (1233)
T KOG1824|consen 227 -MSATRTY-IQCLAAICRQAGHRFGSHLDKIVPLVADYCNKI-EEDDDELREYCLQALESFLRRCPKEILPHVPEIINLC 303 (1233)
T ss_pred -hHHHHHH-HHHHHHHHHHhcchhhcccchhhHHHHHHhccc-ccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHH
Confidence 2344433 3445555553 234566778888888733 433 34 556799999999999999999999999988
Q ss_pred HHHH
Q 005697 381 VAAI 384 (682)
Q Consensus 381 ~~~f 384 (682)
.+.+
T Consensus 304 l~yi 307 (1233)
T KOG1824|consen 304 LSYI 307 (1233)
T ss_pred HHHh
Confidence 7775
No 19
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.07 E-value=0.84 Score=51.76 Aligned_cols=180 Identities=15% Similarity=0.162 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHHHhhhcc--hhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCC------hhhHHHHHHHHH
Q 005697 225 YFGVLMAYGGLQEFLREQKS--EFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLP------EDISADVYSSLL 296 (682)
Q Consensus 225 kegaL~~lg~la~~l~~~~~--~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~------~~~l~~il~~ll 296 (682)
|+.+-.++|.+++.+...-+ ..+......-. -.++ .+|+.-..+||..--|..+++ +..+.++|.+++
T Consensus 425 k~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~l-iGl~---D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~ 500 (858)
T COG5215 425 KSTTAWCFGAIADHVAMIISPCGHLVLEVSASL-IGLM---DCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAIL 500 (858)
T ss_pred hhHHHHHHHHHHHHHHHhcCccccccHHHHHHH-hhhh---ccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHH
Confidence 55555679999999876322 22222222221 2244 689999999999998888753 345777888887
Q ss_pred HhhccCCCCCCCCcchhHHHHHHHHHhhhc--CCCCCChHHHH-----------HHHHHhhcccc-h---h-hhHHHHHH
Q 005697 297 KALQMLDKGDTSCYPVRASAAGAIVGLLEN--DYMPPEWYPLL-----------QVIVGRIGYED-E---E-NSILFELL 358 (682)
Q Consensus 297 ~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~--~~l~p~l~~ll-----------q~Ll~~L~~e~-~---e-~d~l~~~L 358 (682)
+.|.....-..+..-.|+++-.||..++.. +.+.|.+..+. +.+-+.+..++ . | ..-+..+|
T Consensus 501 ~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl 580 (858)
T COG5215 501 NALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVL 580 (858)
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 776321000012367899999999999885 33333333322 22222222222 0 1 22246789
Q ss_pred HHHHHHhhhhhhchHHHHHHHHHHHHHHhcCCCCCCChhhHHhHHHHHHHHHHhhh
Q 005697 359 SSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWE 414 (682)
Q Consensus 359 ~~iVe~~~e~i~P~a~~L~~~L~~~f~k~~~~~~~~~~~~~~~~~~aLa~~~~~~~ 414 (682)
+.++.+++.+|.|...+|+..+.+.+-+- ++ .-+-++.|.+++++..+.+
T Consensus 581 ~aiir~~~~~ie~v~D~lm~Lf~r~les~--~~----t~~~~dV~~aIsal~~sl~ 630 (858)
T COG5215 581 EAIIRTRRRDIEDVEDQLMELFIRILEST--KP----TTAFGDVYTAISALSTSLE 630 (858)
T ss_pred HHHHHhcCCCcccHHHHHHHHHHHHHhcc--CC----chhhhHHHHHHHHHHHHHH
Confidence 99999999999998888887766665332 11 1355678999999988765
No 20
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.04 E-value=0.73 Score=54.97 Aligned_cols=159 Identities=16% Similarity=0.181 Sum_probs=113.2
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcC---C-------hhhHHH
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCL---P-------EDISAD 290 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l---~-------~~~l~~ 290 (682)
...++++--++++.+...-.+.-.+ ..+-+.+.|.-..+ .|++=+-+-|+-+.++|.+.+ . +....+
T Consensus 492 s~~ki~~L~fl~~~L~s~~p~~fhp-~~~~Ls~~v~~aV~--d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~ 568 (1233)
T KOG1824|consen 492 SNLKIDALVFLYSALISHPPEVFHP-HLSALSPPVVAAVG--DPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKT 568 (1233)
T ss_pred HHHHHHHHHHHHHHHhcCChhhccc-chhhhhhHHHHHhc--CchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHH
Confidence 4566777767776655443221111 23444445555555 677888899999999998842 1 346899
Q ss_pred HHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhc--CCCCCChHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhh-h
Q 005697 291 VYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN--DYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAAN-E 367 (682)
Q Consensus 291 il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~--~~l~p~l~~llq~Ll~~L~~e~~e~d~l~~~L~~iVe~~~-e 367 (682)
+|..+++.|...+ .+.-||-.|..++..++.+ +.++..++.++..+++.|.||. .--..++++.-|+...- =
T Consensus 569 m~~~tl~rL~a~d----~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nEi-TRl~AvkAlt~Ia~S~l~i 643 (1233)
T KOG1824|consen 569 MYDCTLQRLKATD----SDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNEI-TRLTAVKALTLIAMSPLDI 643 (1233)
T ss_pred HHHHHHHHHhccc----ccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhchh-HHHHHHHHHHHHHhcccee
Confidence 9999999998766 3489999999999999987 7899999999999999999987 44455777777754432 2
Q ss_pred hhhchHHHHHHHHHHHHHHh
Q 005697 368 NVADHIPYIVSSLVAAISKH 387 (682)
Q Consensus 368 ~i~P~a~~L~~~L~~~f~k~ 387 (682)
.+.|...++...|++..-|.
T Consensus 644 ~l~~~l~~il~~l~~flrK~ 663 (1233)
T KOG1824|consen 644 DLSPVLTEILPELASFLRKN 663 (1233)
T ss_pred ehhhhHHHHHHHHHHHHHHH
Confidence 35677777777776665554
No 21
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.04 E-value=0.19 Score=57.33 Aligned_cols=172 Identities=13% Similarity=0.116 Sum_probs=112.1
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccC--CCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHh
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSV--SVCLPYLVASANWILGELASCLPEDISADVYSSLLKA 298 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~--~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~ 298 (682)
.|+.|.+++..+|++++.-.+ +++ +....++|.+.. .+.+|-+|..+..++-+|++..+...+..+++.++.|
T Consensus 267 kWrtK~aslellg~m~~~ap~----qLs-~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~ 341 (569)
T KOG1242|consen 267 KWRTKMASLELLGAMADCAPK----QLS-LCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDA 341 (569)
T ss_pred hhhhHHHHHHHHHHHHHhchH----HHH-HHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 799999999999998877543 443 334466777653 2689999999999999999988766799999999999
Q ss_pred hccCCCCCCCCcchhHHHHHHHHHhhhcC---CCCCC----hHHHHHHHHHhhcccchhhhHHHHHHHHHHHHh--hhhh
Q 005697 299 LQMLDKGDTSCYPVRASAAGAIVGLLEND---YMPPE----WYPLLQVIVGRIGYEDEENSILFELLSSVVGAA--NENV 369 (682)
Q Consensus 299 L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~---~l~p~----l~~llq~Ll~~L~~e~~e~d~l~~~L~~iVe~~--~e~i 369 (682)
+.||... --.++..+..-. ++.+- +.|+++.=+. -+... -.+.....++..+.-. ..++
T Consensus 342 l~dp~~~----------~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~-eRst~-~kr~t~~IidNm~~LveDp~~l 409 (569)
T KOG1242|consen 342 LADPSCY----------TPECLDSLGATTFVAEVDAPSLALMVPILKRGLA-ERSTS-IKRKTAIIIDNMCKLVEDPKDL 409 (569)
T ss_pred hcCcccc----------hHHHHHhhcceeeeeeecchhHHHHHHHHHHHHh-hccch-hhhhHHHHHHHHHHhhcCHHHH
Confidence 9998722 112334433321 33332 3333333332 11211 1222333333333333 4568
Q ss_pred hchHHHHHHHHHHHHHHhcCCCCCCChhhHHhHHHHHHHHHHhhhhh
Q 005697 370 ADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENF 416 (682)
Q Consensus 370 ~P~a~~L~~~L~~~f~k~~~~~~~~~~~~~~~~~~aLa~~~~~~~~~ 416 (682)
.||++.|.+.|-..+ .++ . |.+++-+-.+|+++-.-.++.
T Consensus 410 apfl~~Llp~lk~~~----~d~-~--PEvR~vaarAL~~l~e~~g~~ 449 (569)
T KOG1242|consen 410 APFLPSLLPGLKENL----DDA-V--PEVRAVAARALGALLERLGEV 449 (569)
T ss_pred hhhHHHHhhHHHHHh----cCC-C--hhHHHHHHHHHHHHHHHHHhh
Confidence 999999999987776 233 2 468888888898887765543
No 22
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=96.47 E-value=0.038 Score=53.79 Aligned_cols=127 Identities=13% Similarity=0.100 Sum_probs=100.4
Q ss_pred HHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChh----hHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhh
Q 005697 249 NLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPED----ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLL 324 (682)
Q Consensus 249 ~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~----~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l 324 (682)
.-+.+++.-.++ ++.+.=|-.++.+++...+.-+.+ .-.+.++.+++.|+.++ +.+++..|+.+|..++
T Consensus 24 ~~l~~ri~~LL~--s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~-----~~~~~~~ai~~L~~l~ 96 (165)
T PF08167_consen 24 HKLVTRINSLLQ--SKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPD-----PPSVLEAAIITLTRLF 96 (165)
T ss_pred HHHHHHHHHHhC--CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHHH
Confidence 445556777788 788888888888888776643333 34677888889998876 4889999999999998
Q ss_pred hc---------CCCCCChHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhhhhhchHHHHHHHHHHH
Q 005697 325 EN---------DYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAA 383 (682)
Q Consensus 325 ~~---------~~l~p~l~~llq~Ll~~L~~e~~e~d~l~~~L~~iVe~~~e~i~P~a~~L~~~L~~~ 383 (682)
.. +...|+++.+++.+++.+.... ..+..+.+|.+++..+..-+.||..++-+.+...
T Consensus 97 ~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~~~-~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~l 163 (165)
T PF08167_consen 97 DLIRGKPTLTREIATPNLPKFIQSLLQLLQDSS-CPETALDALATLLPHHPTTFRPFANKIESALLSL 163 (165)
T ss_pred HHhcCCCchHHHHhhccHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHCCccccchHHHHHHHHHHH
Confidence 75 3679999999999999544333 5778899999999999999999999987776554
No 23
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.39 E-value=0.0036 Score=48.97 Aligned_cols=52 Identities=35% Similarity=0.409 Sum_probs=43.4
Q ss_pred cccHHHHHHHHHHhhhcC---ChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHh
Q 005697 266 PYLVASANWILGELASCL---PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGL 323 (682)
Q Consensus 266 p~LrarA~~~l~~f~~~l---~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~ 323 (682)
|-+|..|+|.+|+++... -...+.++++.++.+|.|++ ..||..|+.||.++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~------~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDD------DSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSS------HHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCC------HHHHHHHHHHHhcC
Confidence 457999999999987643 24578899999999999887 58999999999864
No 24
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.26 E-value=0.089 Score=53.42 Aligned_cols=180 Identities=17% Similarity=0.113 Sum_probs=106.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHhh-hcchhHHHHHH---HhhhhcccCCCCCcccHHHHHHHHHHhhhcCC---hhhHHHH
Q 005697 219 SRIQKDYFGVLMAYGGLQEFLRE-QKSEFTANLVR---SRVLPLYSVSVCLPYLVASANWILGELASCLP---EDISADV 291 (682)
Q Consensus 219 ~~~~~~kegaL~~lg~la~~l~~-~~~~~le~fL~---~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~---~~~l~~i 291 (682)
..+|..+..+|.-+-.+...-.. ...+.+...+. .-+...+. +...-+...||.+++.++..+. ......+
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~--d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLS--DLRSKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S---HH---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 35899988888887777665411 11122223333 34445555 4566788899999999988643 2357889
Q ss_pred HHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhcCCCCCCh-HHHHHHHHHhhcccc--hhhhHHHHHHHHHHHHhh--
Q 005697 292 YSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEW-YPLLQVIVGRIGYED--EENSILFELLSSVVGAAN-- 366 (682)
Q Consensus 292 l~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~~l~p~l-~~llq~Ll~~L~~e~--~e~d~l~~~L~~iVe~~~-- 366 (682)
++.+++.+.++. -.||..|..||..++++-...+.+ .+++... .+.. .--......+..+++..+
T Consensus 96 l~~Ll~~~~~~~------~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~----~~~Kn~~vR~~~~~~l~~~l~~~~~~ 165 (228)
T PF12348_consen 96 LPPLLKKLGDSK------KFIREAANNALDAIIESCSYSPKILLEILSQG----LKSKNPQVREECAEWLAIILEKWGSD 165 (228)
T ss_dssp HHHHHHGGG---------HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHH----TT-S-HHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHcccc------HHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHH----HhCCCHHHHHHHHHHHHHHHHHccch
Confidence 999999999987 799999999999999954322333 3333332 2222 123445777888888888
Q ss_pred -hhhhchHHHHHHHHHHHHHHhcCCCCCCChhhHHhHHHHHHHHHHhhhh
Q 005697 367 -ENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWEN 415 (682)
Q Consensus 367 -e~i~P~a~~L~~~L~~~f~k~~~~~~~~~~~~~~~~~~aLa~~~~~~~~ 415 (682)
..+... .....+...+.+.+.+.. +.+.+.+-.++..+-.++++
T Consensus 166 ~~~l~~~--~~~~~l~~~l~~~l~D~~---~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 166 SSVLQKS--AFLKQLVKALVKLLSDAD---PEVREAARECLWALYSHFPE 210 (228)
T ss_dssp -GGG--H--HHHHHHHHHHHHHHTSS----HHHHHHHHHHHHHHHHHH-H
T ss_pred Hhhhccc--chHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHHHCCH
Confidence 334332 234556666666666664 58999999999888777753
No 25
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.08 E-value=0.44 Score=50.84 Aligned_cols=71 Identities=27% Similarity=0.248 Sum_probs=60.3
Q ss_pred hHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhh
Q 005697 246 FTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLE 325 (682)
Q Consensus 246 ~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~ 325 (682)
.++.++.+.|.|.++ ++++-+|.+|..++|-|+- ++++.-.+.+..+.++++..+ .+||+.|..||--++.
T Consensus 23 ~l~~ll~~lI~P~v~--~~~~~vR~~al~cLGl~~L-ld~~~a~~~l~l~~~~~~~~~------~~v~~~al~~l~Dll~ 93 (298)
T PF12719_consen 23 SLESLLDSLILPAVQ--SSDPAVRELALKCLGLCCL-LDKELAKEHLPLFLQALQKDD------EEVKITALKALFDLLL 93 (298)
T ss_pred hHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHhCC------HHHHHHHHHHHHHHHH
Confidence 467999999999999 7899999999999999965 677777788888888885444 7999999999987765
No 26
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.03 E-value=1.6 Score=50.22 Aligned_cols=74 Identities=19% Similarity=0.135 Sum_probs=55.5
Q ss_pred hHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcC-ChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhh
Q 005697 246 FTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCL-PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLL 324 (682)
Q Consensus 246 ~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l-~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l 324 (682)
.++.+-.+.++..|+ +..+=.-.-+|.++.+.-+.. +.....++.+.+..+|..++ ..||.-|+.+|++.+
T Consensus 34 ~l~~~~~~~lf~~L~--~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~------~~Vr~l~l~~l~~~~ 105 (503)
T PF10508_consen 34 FLERLPEPVLFDCLN--TSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPS------PKVRRLALKQLGRIA 105 (503)
T ss_pred HHHhchHHHHHHHHh--hcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHHh
Confidence 344555555777787 344444467788888877764 44558889999999999888 899999999999998
Q ss_pred hcC
Q 005697 325 END 327 (682)
Q Consensus 325 ~~~ 327 (682)
++.
T Consensus 106 ~~~ 108 (503)
T PF10508_consen 106 RHS 108 (503)
T ss_pred cCC
Confidence 874
No 27
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.99 E-value=0.024 Score=50.20 Aligned_cols=73 Identities=15% Similarity=0.130 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhhhcCC---hhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhc--CCCCCChHHHHHHHHHh
Q 005697 269 VASANWILGELASCLP---EDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN--DYMPPEWYPLLQVIVGR 343 (682)
Q Consensus 269 rarA~~~l~~f~~~l~---~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~--~~l~p~l~~llq~Ll~~ 343 (682)
|..+.+.++..+-.++ .+.+..+++-+++++.|++ .-||-+||.||.++... +.+-|+..+++..|.+.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d------~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl 76 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQD------SRVRYYACEALYNISKVARGEILPYFNEIFDALCKL 76 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777777766553 5689999999999999998 89999999999999886 46677899999999994
Q ss_pred hccc
Q 005697 344 IGYE 347 (682)
Q Consensus 344 L~~e 347 (682)
+...
T Consensus 77 ~~D~ 80 (97)
T PF12755_consen 77 SADP 80 (97)
T ss_pred HcCC
Confidence 4433
No 28
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=95.93 E-value=0.12 Score=59.21 Aligned_cols=123 Identities=15% Similarity=0.068 Sum_probs=85.0
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhc
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQ 300 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~ 300 (682)
+...|.-++.++..+... .+.+--+..+.+..+++ +++|+.|+.|..+++.++ +++....+++.+.+++.
T Consensus 55 ~~~~Krl~yl~l~~~~~~-----~~~~~~l~~n~l~kdl~--~~n~~~~~lAL~~l~~i~---~~~~~~~l~~~v~~ll~ 124 (526)
T PF01602_consen 55 DLELKRLGYLYLSLYLHE-----DPELLILIINSLQKDLN--SPNPYIRGLALRTLSNIR---TPEMAEPLIPDVIKLLS 124 (526)
T ss_dssp SHHHHHHHHHHHHHHTTT-----SHHHHHHHHHHHHHHHC--SSSHHHHHHHHHHHHHH----SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhc-----chhHHHHHHHHHHHhhc--CCCHHHHHHHHhhhhhhc---ccchhhHHHHHHHHHhc
Confidence 566676666666554332 22244566777788899 899999999999999987 58899999999999999
Q ss_pred cCCCCCCCCcchhHHHHHHHHHhhhc--CCCCCChHHHHHHHHHhhcccchhhhHHHHHHHHHHHH
Q 005697 301 MLDKGDTSCYPVRASAAGAIVGLLEN--DYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGA 364 (682)
Q Consensus 301 d~~~~~~~~~pVrv~Aa~AL~~~l~~--~~l~p~l~~llq~Ll~~L~~e~~e~d~l~~~L~~iVe~ 364 (682)
+++ .-||-.|+.|+..+... +.+.+. +++.+.+.| .+. +...+..++..+.+.
T Consensus 125 ~~~------~~VRk~A~~~l~~i~~~~p~~~~~~---~~~~l~~lL-~d~-~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 125 DPS------PYVRKKAALALLKIYRKDPDLVEDE---LIPKLKQLL-SDK-DPSVVSAALSLLSEI 179 (526)
T ss_dssp SSS------HHHHHHHHHHHHHHHHHCHCCHHGG---HHHHHHHHT-THS-SHHHHHHHHHHHHHH
T ss_pred CCc------hHHHHHHHHHHHHHhccCHHHHHHH---HHHHHhhhc-cCC-cchhHHHHHHHHHHH
Confidence 998 79999999999999885 233332 344444533 322 344444444444333
No 29
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.69 E-value=0.19 Score=56.72 Aligned_cols=233 Identities=15% Similarity=0.170 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHHhcc------CcccccccccHHHHHHHHhhccccCChhhhhhhhhCHHHHHHhcCCCchhhhcccccc
Q 005697 72 RIISLAFDVISHVLET------GPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWRED 145 (682)
Q Consensus 72 ~~i~~~~~fl~~~v~~------~~~~~ll~p~l~~Li~~vIfP~l~~teeD~Elwe~DP~EYIr~~~d~~~~~~~~~~ed 145 (682)
+++...|.|=...-+. .....+++|++..++.-+ ++-.++-+ |.+.--++ .++
T Consensus 306 evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l-~~h~qlp~-~~~~l~Ee-------------------~~~ 364 (559)
T KOG2081|consen 306 EVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLL-KRHVQLPP-DQFDLPEE-------------------ESE 364 (559)
T ss_pred hhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHH-HHHccCCC-ccccCccc-------------------hhH
Confidence 5566666654443321 122346789999999754 68878777 43322222 223
Q ss_pred ccchhHHHHHHHHHHhhcCCCCCCCCCCCcccccccccccccccccccchhhHHHHHHHHhcCCCCCCCCCccccchhhH
Q 005697 146 LFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDY 225 (682)
Q Consensus 146 ~~S~R~aA~~lL~~L~~~~~~~~~~~~~~~~~~~kr~k~~~~k~~~~~~~l~~ili~~~L~~~~~~~~~~~~~~~~~~~k 225 (682)
+.--|....+++...+--. +.. +.+. ++..+...+ ...|...
T Consensus 365 f~~fR~~v~dvl~Dv~~ii-----------------gs~---------e~lk-----~~~~~l~e~-------~~~We~~ 406 (559)
T KOG2081|consen 365 FFEFRLKVGDVLKDVAFII-----------------GSD---------ECLK-----QMYIRLKEN-------NASWEEV 406 (559)
T ss_pred HHHHHHHHHHHHHHHHHHh-----------------CcH---------HHHH-----HHHHHHccC-------CCchHHH
Confidence 4445888899998852111 110 1222 122221121 1379999
Q ss_pred HHHHHHHHHHHHHHhhhcchhHHHHHHHhh-hhcccCCCCCcccHHHHHHHHHHhhhcC--ChhhHHHHHHHHHHhhccC
Q 005697 226 FGVLMAYGGLQEFLREQKSEFTANLVRSRV-LPLYSVSVCLPYLVASANWILGELASCL--PEDISADVYSSLLKALQML 302 (682)
Q Consensus 226 egaL~~lg~la~~l~~~~~~~le~fL~~~V-lP~l~~~s~~p~LrarA~~~l~~f~~~l--~~~~l~~il~~ll~~L~d~ 302 (682)
||+|+.+..++..+.-...+.+...+.... +|+ +.| +|..++-.+|.|++++ .|+.+..+.+-+.+.++..
T Consensus 407 EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nlp~-----Q~~-~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~ 480 (559)
T KOG2081|consen 407 EAALFILRAVAKNVSPEENTIMPEVLKLICNLPE-----QAP-LRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLK 480 (559)
T ss_pred HHHHHHHHHHhccCCccccchHHHHHHHHhCCcc-----chh-HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhc
Confidence 999999999988775434455555555442 232 233 9999999999999985 6888888888888888765
Q ss_pred CCCCCCCcchhHHHHHHHHHhhhc--CCCCCChHHHHHHHHH---hhcccchhhhHHHHHHHHHHHHhhhh-hhchHHHH
Q 005697 303 DKGDTSCYPVRASAAGAIVGLLEN--DYMPPEWYPLLQVIVG---RIGYEDEENSILFELLSSVVGAANEN-VADHIPYI 376 (682)
Q Consensus 303 ~~~~~~~~pVrv~Aa~AL~~~l~~--~~l~p~l~~llq~Ll~---~L~~e~~e~d~l~~~L~~iVe~~~e~-i~P~a~~L 376 (682)
. ....||.|....+.. ..+.+.++.+.+.+.. -..++ |...+.+.+..++.+...+ +.+...++
T Consensus 481 ~--------~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l~~~~~~~--e~a~l~~~~s~i~~~lp~~k~~~~~~el 550 (559)
T KOG2081|consen 481 R--------LASAAALAFHRICSACRVQMTCLIPSLLELIRSLDSTQINE--EAACLLQGISLIISNLPAHKAKIALEEL 550 (559)
T ss_pred c--------hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccH--HHHHHHHHHHHHHhcCCHhhhhHHHHHH
Confidence 3 556667777666654 3455555555544444 22332 5555788888888777765 44444555
Q ss_pred HHH
Q 005697 377 VSS 379 (682)
Q Consensus 377 ~~~ 379 (682)
+..
T Consensus 551 ~~~ 553 (559)
T KOG2081|consen 551 CEP 553 (559)
T ss_pred hhH
Confidence 443
No 30
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.61 E-value=0.055 Score=47.96 Aligned_cols=85 Identities=16% Similarity=0.115 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChh---hHHHHHHHHHHhhcc
Q 005697 225 YFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPED---ISADVYSSLLKALQM 301 (682)
Q Consensus 225 kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~---~l~~il~~ll~~L~d 301 (682)
|.|+|..+.+++-.+.+.-..+++.++ .-|+..+. ++.+-+|--||..+...++....+ .+.+++.++.+.+.|
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il-~pVL~~~~--D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D 79 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEIL-PPVLKCFD--DQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSAD 79 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHH-HHHHHHcC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 789999999999888753233443333 35556666 789999999999999999875433 579999999999999
Q ss_pred CCCCCCCCcchhHHHHH
Q 005697 302 LDKGDTSCYPVRASAAG 318 (682)
Q Consensus 302 ~~~~~~~~~pVrv~Aa~ 318 (682)
++ .-||..|..
T Consensus 80 ~d------~~Vr~~a~~ 90 (97)
T PF12755_consen 80 PD------ENVRSAAEL 90 (97)
T ss_pred Cc------hhHHHHHHH
Confidence 98 678877743
No 31
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=95.60 E-value=4.5 Score=46.55 Aligned_cols=144 Identities=15% Similarity=0.152 Sum_probs=89.2
Q ss_pred HHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCC--hh--hHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhh
Q 005697 249 NLVRSRVLPLYSVSVCLPYLVASANWILGELASCLP--ED--ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLL 324 (682)
Q Consensus 249 ~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~--~~--~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l 324 (682)
+-+..++...|. +++|.+|.-||+.+++....-+ .+ .-..++..++.||.+++ .-|.-.|+.+|..+.
T Consensus 76 ~~~~~~L~~gL~--h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d------~~Va~~A~~~L~~l~ 147 (503)
T PF10508_consen 76 PQYQPFLQRGLT--HPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPD------LSVAKAAIKALKKLA 147 (503)
T ss_pred HHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCc------HHHHHHHHHHHHHHh
Confidence 333445556677 7999999999999999865321 11 12458899999999998 889999999999999
Q ss_pred hcC-----CCCCChHHHHHHHHHhhcccchhhhH-HHHHHHHHHHHhhhhhhchHHHHHHH--HHHHHHHhcCCCCCCCh
Q 005697 325 END-----YMPPEWYPLLQVIVGRIGYEDEENSI-LFELLSSVVGAANENVADHIPYIVSS--LVAAISKHMHPSSEPWP 396 (682)
Q Consensus 325 ~~~-----~l~p~l~~llq~Ll~~L~~e~~e~d~-l~~~L~~iVe~~~e~i~P~a~~L~~~--L~~~f~k~~~~~~~~~~ 396 (682)
.++ .+.+.+.+-+..++. . .++. -+++++.+++.++.. |.+.+.+.. +...+++.+.+ .|.
T Consensus 148 ~~~~~~~~l~~~~~~~~L~~l~~----~--~~~~vR~Rv~el~v~i~~~S--~~~~~~~~~sgll~~ll~eL~~-dDi-- 216 (503)
T PF10508_consen 148 SHPEGLEQLFDSNLLSKLKSLMS----Q--SSDIVRCRVYELLVEIASHS--PEAAEAVVNSGLLDLLLKELDS-DDI-- 216 (503)
T ss_pred CCchhHHHHhCcchHHHHHHHHh----c--cCHHHHHHHHHHHHHHHhcC--HHHHHHHHhccHHHHHHHHhcC-ccH--
Confidence 864 234444333444333 2 1332 367777777665432 222233332 55555555555 332
Q ss_pred hhHHhHHHHHHHHHH
Q 005697 397 QVVERGFAALALMAQ 411 (682)
Q Consensus 397 ~~~~~~~~aLa~~~~ 411 (682)
=+.-.+++.|+.++.
T Consensus 217 Lvqlnalell~~La~ 231 (503)
T PF10508_consen 217 LVQLNALELLSELAE 231 (503)
T ss_pred HHHHHHHHHHHHHHc
Confidence 233456777766666
No 32
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.31 E-value=0.14 Score=50.31 Aligned_cols=74 Identities=23% Similarity=0.214 Sum_probs=59.3
Q ss_pred CcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhcCCCCCChHHHHHHHHHhh
Q 005697 265 LPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRI 344 (682)
Q Consensus 265 ~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~~l~p~l~~llq~Ll~~L 344 (682)
+|-+|..+.-++|-++-..| ..+.+..+.+.++|.|++ ..||-.|...|..++.++++++. +.++..++..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~-~~ve~~~~~l~~~L~D~~------~~VR~~al~~Ls~Li~~d~ik~k-~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP-NLVEPYLPNLYKCLRDED------PLVRKTALLVLSHLILEDMIKVK-GQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc-HHHHhHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHcCceeeh-hhhhHHHHHHH
Confidence 47789999999998876554 578889999999999998 89999999999999999877664 34445555645
Q ss_pred cc
Q 005697 345 GY 346 (682)
Q Consensus 345 ~~ 346 (682)
..
T Consensus 73 ~D 74 (178)
T PF12717_consen 73 VD 74 (178)
T ss_pred cC
Confidence 33
No 33
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=95.23 E-value=7.8 Score=45.60 Aligned_cols=112 Identities=16% Similarity=0.183 Sum_probs=76.9
Q ss_pred HHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhc---CCCCCC-hHHHHHHHHHhhcccchhhhHHHHHHHHHHHHh
Q 005697 290 DVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN---DYMPPE-WYPLLQVIVGRIGYEDEENSILFELLSSVVGAA 365 (682)
Q Consensus 290 ~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~---~~l~p~-l~~llq~Ll~~L~~e~~e~d~l~~~L~~iVe~~ 365 (682)
.++.-++.-+.|.. -+-|-.++.++...+.+ ..+-.- -..++..++.++..+..+-..++....+++..+
T Consensus 716 ~~v~R~v~~lkde~------e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~l 789 (1172)
T KOG0213|consen 716 PIVSRVVLDLKDEP------EQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNAL 789 (1172)
T ss_pred HHHHHHhhhhcccc------HHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 34555566666665 68888888888887765 133322 345667777766665423335678899999999
Q ss_pred hhhhhchHHHHHHHHHHHHHHhcCCCCCCChhhHHhHHHHHHHHHHhhh
Q 005697 366 NENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWE 414 (682)
Q Consensus 366 ~e~i~P~a~~L~~~L~~~f~k~~~~~~~~~~~~~~~~~~aLa~~~~~~~ 414 (682)
+..+.||.++|+..+. ..+++.+ +.+.+++.+.++.++.-.+
T Consensus 790 g~r~kpylpqi~stiL----~rLnnks---a~vRqqaadlis~la~Vlk 831 (1172)
T KOG0213|consen 790 GGRVKPYLPQICSTIL----WRLNNKS---AKVRQQAADLISSLAKVLK 831 (1172)
T ss_pred hhccccchHHHHHHHH----HHhcCCC---hhHHHHHHHHHHHHHHHHH
Confidence 9999999999987753 3334333 4688898888888776443
No 34
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.19 E-value=1.4 Score=54.99 Aligned_cols=111 Identities=14% Similarity=0.169 Sum_probs=74.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccC-CCCCcccHHHHHHHHHHhhhcC-C-----hhhHHHH
Q 005697 219 SRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSV-SVCLPYLVASANWILGELASCL-P-----EDISADV 291 (682)
Q Consensus 219 ~~~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~-~s~~p~LrarA~~~l~~f~~~l-~-----~~~l~~i 291 (682)
...|..|-||-+-+|+|+..-.+ .+++++.+.|-..+.- -+|.+-++.. ..+.|-... + .+.+.+|
T Consensus 968 ~A~wnSk~GaAfGf~~i~~~a~~----kl~p~l~kLIPrLyRY~yDP~~~Vq~a---M~sIW~~Li~D~k~~vd~y~neI 1040 (1702)
T KOG0915|consen 968 NATWNSKKGAAFGFGAIAKQAGE----KLEPYLKKLIPRLYRYQYDPDKKVQDA---MTSIWNALITDSKKVVDEYLNEI 1040 (1702)
T ss_pred hchhhcccchhhchHHHHHHHHH----hhhhHHHHhhHHHhhhccCCcHHHHHH---HHHHHHHhccChHHHHHHHHHHH
Confidence 34699999999999999887543 5788888666444441 1355444432 233443332 3 3467788
Q ss_pred HHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhc---CCCCCChHHHHHHHHH
Q 005697 292 YSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN---DYMPPEWYPLLQVIVG 342 (682)
Q Consensus 292 l~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~---~~l~p~l~~llq~Ll~ 342 (682)
++.++..|.+.. -.||.++|.||..+++- +.+.-.+|.+.+.+|.
T Consensus 1041 l~eLL~~lt~ke------wRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fR 1088 (1702)
T KOG0915|consen 1041 LDELLVNLTSKE------WRVREASCLALADLLQGRPFDQVKEKLPELWEAAFR 1088 (1702)
T ss_pred HHHHHHhccchh------HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 888888888877 89999999999999985 2344445555555554
No 35
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.13 E-value=4.3 Score=47.46 Aligned_cols=152 Identities=18% Similarity=0.232 Sum_probs=100.1
Q ss_pred HHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCCCCCc
Q 005697 231 AYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCY 310 (682)
Q Consensus 231 ~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~d~~~~~~~~~ 310 (682)
|+++|+-+.+ +-+..=|..-|+-.++ +.-||+|.||.-++-+.--.. |+.+...|+-+...|.||| +
T Consensus 129 AL~GLS~fvT----pdLARDLa~Dv~tLL~--sskpYvRKkAIl~lykvFLkY-PeAlr~~FprL~EkLeDpD------p 195 (877)
T KOG1059|consen 129 ALSGLSCIVT----PDLARDLADDVFTLLN--SSKPYVRKKAILLLYKVFLKY-PEALRPCFPRLVEKLEDPD------P 195 (877)
T ss_pred eecccccccC----chhhHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHhh-hHhHhhhHHHHHHhccCCC------c
Confidence 5666666543 1233334455666677 789999999998776653323 6688999999999999999 7
Q ss_pred chhHHHHHHHHHhhhc-C--CCCCChHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHh
Q 005697 311 PVRASAAGAIVGLLEN-D--YMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKH 387 (682)
Q Consensus 311 pVrv~Aa~AL~~~l~~-~--~l~p~l~~llq~Ll~~L~~e~~e~d~l~~~L~~iVe~~~e~i~P~a~~L~~~L~~~f~k~ 387 (682)
-|..+|+.-|+.+.+- + |+ | +.|++-+|+..-+| |=.|.+.|. -|+ .++|+.|.|..+|..-+..+
T Consensus 196 ~V~SAAV~VICELArKnPknyL-~-LAP~ffkllttSsN----NWmLIKiiK----LF~-aLtplEPRLgKKLieplt~l 264 (877)
T KOG1059|consen 196 SVVSAAVSVICELARKNPQNYL-Q-LAPLFYKLLVTSSN----NWVLIKLLK----LFA-ALTPLEPRLGKKLIEPITEL 264 (877)
T ss_pred hHHHHHHHHHHHHHhhCCcccc-c-ccHHHHHHHhccCC----CeehHHHHH----HHh-hccccCchhhhhhhhHHHHH
Confidence 7889999999988874 2 33 2 34455555442222 333444433 343 37899999999998888887
Q ss_pred cCCCCCCChhhHHhHHHHHHHHHH
Q 005697 388 MHPSSEPWPQVVERGFAALALMAQ 411 (682)
Q Consensus 388 ~~~~~~~~~~~~~~~~~aLa~~~~ 411 (682)
++... .-..+++|+..+..
T Consensus 265 i~sT~-----AmSLlYECvNTVVa 283 (877)
T KOG1059|consen 265 MESTV-----AMSLLYECVNTVVA 283 (877)
T ss_pred HHhhH-----HHHHHHHHHHHhee
Confidence 75442 33445666654444
No 36
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.07 E-value=1.3 Score=51.69 Aligned_cols=182 Identities=12% Similarity=0.117 Sum_probs=107.1
Q ss_pred ChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhcCCCCCChHHHHHHHHHhhcccchhhhHHHHHHHHHHH
Q 005697 284 PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVG 363 (682)
Q Consensus 284 ~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~~l~p~l~~llq~Ll~~L~~e~~e~d~l~~~L~~iVe 363 (682)
+|..-.++++.+++.|+..+ ..|+.+||.+|-.+-.++ .-+.+--+.++.++-.+. +|..=.-++.++++
T Consensus 237 ~p~~~~~~i~~i~~lL~sts------saV~fEaa~tlv~lS~~p---~alk~Aa~~~i~l~~kes-dnnvklIvldrl~~ 306 (948)
T KOG1058|consen 237 NPAEKARYIRCIYNLLSSTS------SAVIFEAAGTLVTLSNDP---TALKAAASTYIDLLVKES-DNNVKLIVLDRLSE 306 (948)
T ss_pred CHHHhhHHHHHHHHHHhcCC------chhhhhhcceEEEccCCH---HHHHHHHHHHHHHHHhcc-CcchhhhhHHHHHH
Confidence 45566778888889998887 789999999988776543 123445556666444444 55555556666654
Q ss_pred HhhhhhhchHHHHHHHHHHHHHHhcCCCCCCChhhHHhHHHHHHHHHHhhhhhc------hhhhh-hhccCCccchh--H
Q 005697 364 AANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFL------REEVE-LDQSSGKWESG--Q 434 (682)
Q Consensus 364 ~~~e~i~P~a~~L~~~L~~~f~k~~~~~~~~~~~~~~~~~~aLa~~~~~~~~~~------~~~~~-~~~~~d~~~~~--~ 434 (682)
-- +--..+.+-|+--++|.+..+. ..+..-.|+-.--++.+-.-.+ .+..+ .++ +..+.+ .
T Consensus 307 l~-----~~~~~il~~l~mDvLrvLss~d---ldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~--e~d~~~~yR 376 (948)
T KOG1058|consen 307 LK-----ALHEKILQGLIMDVLRVLSSPD---LDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE--ESDDNGKYR 376 (948)
T ss_pred Hh-----hhhHHHHHHHHHHHHHHcCccc---ccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc--ccccchHHH
Confidence 32 3334566777777777776653 2355443332222221110000 01111 111 111222 2
Q ss_pred hHHHHHHHHHHHhhhhhcccccccccCCCcchHHhHHHHHHHHHhhcCchhHHHhhhHHHHHHHHHHHH
Q 005697 435 AAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLI 503 (682)
Q Consensus 435 ~a~L~ti~tllq~~~~~~~~e~~~s~~~~~~~~~~le~~l~~vi~~i~~~~~~l~~~~~~~l~e~~~li 503 (682)
-.+++||-+.- ..+ | +..+.+++-++.|+.|.+......+..|+.|+.+..
T Consensus 377 qlLiktih~ca------------v~F---p---~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~ 427 (948)
T KOG1058|consen 377 QLLIKTIHACA------------VKF---P---EVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKF 427 (948)
T ss_pred HHHHHHHHHHh------------hcC---h---HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhC
Confidence 23677776655 222 2 235678888999999999998999999999998866
No 37
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.06 E-value=1.8 Score=52.92 Aligned_cols=156 Identities=18% Similarity=0.214 Sum_probs=112.1
Q ss_pred chhhHHHHHHHHHHHHHHHhhhc---chhHHHHHHHhhhhcccCCCCCcccHHHHH----HHHHHhhhcCChhhHHHHHH
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQK---SEFTANLVRSRVLPLYSVSVCLPYLVASAN----WILGELASCLPEDISADVYS 293 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~---~~~le~fL~~~VlP~l~~~s~~p~LrarA~----~~l~~f~~~l~~~~l~~il~ 293 (682)
.=+..+.+|.-+|.++..+..-+ +..++.|+.. |-+.+. ...+.++++.+ -++.+|.+.++.+.+.++++
T Consensus 754 aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~-Isagl~--gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~ 830 (1176)
T KOG1248|consen 754 ARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSI-ISAGLV--GDSTRVVASDIVAITHILQEFKNILDDETLEKLIS 830 (1176)
T ss_pred HHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHH-HHhhhc--ccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 34567888888887665554322 2346777763 344455 35566666632 34456677789999999999
Q ss_pred HHHHhhccCCCCCCCCcchhHHHHHHHHHhhhc---CCCCCChHHHHHHHHHhhcccc--hhhhHHHHHHHHHHHHhhhh
Q 005697 294 SLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN---DYMPPEWYPLLQVIVGRIGYED--EENSILFELLSSVVGAANEN 368 (682)
Q Consensus 294 ~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~---~~l~p~l~~llq~Ll~~L~~e~--~e~d~l~~~L~~iVe~~~e~ 368 (682)
.+.-+|.... .-|+..|...|..++.- ..+.|+++.||..++. +..+- ..--.+-..++.++.+|+-+
T Consensus 831 ~V~~~L~s~s------reI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~-ls~d~k~~~r~Kvr~LlekLirkfg~~ 903 (1176)
T KOG1248|consen 831 MVCLYLASNS------REIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLA-LSHDHKIKVRKKVRLLLEKLIRKFGAE 903 (1176)
T ss_pred HHHHHHhcCC------HHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHhCHH
Confidence 9999999887 78999999999999875 4899999999999999 65553 12334567788999999865
Q ss_pred -hhchHHHHHHHHHHHHHH
Q 005697 369 -VADHIPYIVSSLVAAISK 386 (682)
Q Consensus 369 -i~P~a~~L~~~L~~~f~k 386 (682)
+.+|.++.-..+.....|
T Consensus 904 eLe~~~pee~~klL~nIRK 922 (1176)
T KOG1248|consen 904 ELESFLPEEDMKLLTNIRK 922 (1176)
T ss_pred HHHhhCHHHHHHHHHHHHH
Confidence 788888765555555544
No 38
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.00 E-value=0.068 Score=47.54 Aligned_cols=97 Identities=18% Similarity=0.100 Sum_probs=67.2
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCCh--hhH--HHHHHHHH
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPE--DIS--ADVYSSLL 296 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~--~~l--~~il~~ll 296 (682)
+|..+++++.+++.++..-.+.....+..-....+.+.+. ++++-+|..|+|+++.++...++ +.+ ..+++.++
T Consensus 20 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~ 97 (120)
T cd00020 20 DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK--SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLV 97 (120)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh--CCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHH
Confidence 4788999999999988653221111222222334445556 57899999999999999875321 222 23678888
Q ss_pred HhhccCCCCCCCCcchhHHHHHHHHHhhh
Q 005697 297 KALQMLDKGDTSCYPVRASAAGAIVGLLE 325 (682)
Q Consensus 297 ~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~ 325 (682)
+.|.+.+ .-+|-.|+.+|.++++
T Consensus 98 ~~l~~~~------~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 98 NLLDSSN------EDIQKNATGALSNLAS 120 (120)
T ss_pred HHHhcCC------HHHHHHHHHHHHHhhC
Confidence 8888876 7899999999998763
No 39
>PTZ00429 beta-adaptin; Provisional
Probab=94.87 E-value=0.55 Score=56.25 Aligned_cols=123 Identities=15% Similarity=0.006 Sum_probs=79.8
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhc
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQ 300 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~ 300 (682)
+...|-=++..+...++. .+-+.-+..+.+.-+++ +++|++|+-|+.+++..+. ++.+..+...+.+++.
T Consensus 81 d~elKKLvYLYL~~ya~~-----~pelalLaINtl~KDl~--d~Np~IRaLALRtLs~Ir~---~~i~e~l~~~lkk~L~ 150 (746)
T PTZ00429 81 DLELKKLVYLYVLSTARL-----QPEKALLAVNTFLQDTT--NSSPVVRALAVRTMMCIRV---SSVLEYTLEPLRRAVA 150 (746)
T ss_pred CHHHHHHHHHHHHHHccc-----ChHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHcCCc---HHHHHHHHHHHHHHhc
Confidence 455555555555444322 12222344566677888 7999999999988877544 7888899999999999
Q ss_pred cCCCCCCCCcchhHHHHHHHHHhhhcC-CCC--CChHHHHHHHHHhhcccchhhhHHHHHHHHHHHH
Q 005697 301 MLDKGDTSCYPVRASAAGAIVGLLEND-YMP--PEWYPLLQVIVGRIGYEDEENSILFELLSSVVGA 364 (682)
Q Consensus 301 d~~~~~~~~~pVrv~Aa~AL~~~l~~~-~l~--p~l~~llq~Ll~~L~~e~~e~d~l~~~L~~iVe~ 364 (682)
|++ .-||-.||.|+..+.+.+ .+. ..+.+-+..+ |... +...+..++..+.+.
T Consensus 151 D~~------pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~L---L~D~--dp~Vv~nAl~aL~eI 206 (746)
T PTZ00429 151 DPD------PYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVEL---LNDN--NPVVASNAAAIVCEV 206 (746)
T ss_pred CCC------HHHHHHHHHHHHHHHhhCcccccccchHHHHHHH---hcCC--CccHHHHHHHHHHHH
Confidence 988 899999999999987742 221 1233333333 3322 455555555544433
No 40
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=94.69 E-value=0.74 Score=45.21 Aligned_cols=142 Identities=11% Similarity=0.100 Sum_probs=85.1
Q ss_pred HHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhc-CChhhHHHHHHHHHHhhccCCCCCCCCc
Q 005697 232 YGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASC-LPEDISADVYSSLLKALQMLDKGDTSCY 310 (682)
Q Consensus 232 lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~-l~~~~l~~il~~ll~~L~d~~~~~~~~~ 310 (682)
+-++++.+.. .+..+++++. ++...|. +++|.+|..|+.+++++-.. +- ..-.+++..++.++.|++ .
T Consensus 9 i~~l~DL~~r-~~~~ve~~~~-~l~~~L~--D~~~~VR~~al~~Ls~Li~~d~i-k~k~~l~~~~l~~l~D~~------~ 77 (178)
T PF12717_consen 9 IIALGDLCIR-YPNLVEPYLP-NLYKCLR--DEDPLVRKTALLVLSHLILEDMI-KVKGQLFSRILKLLVDEN------P 77 (178)
T ss_pred HHHHHHHHHh-CcHHHHhHHH-HHHHHHC--CCCHHHHHHHHHHHHHHHHcCce-eehhhhhHHHHHHHcCCC------H
Confidence 3344444433 3445666654 6778888 79999999999999998653 21 112345567778889998 7
Q ss_pred chhHHHHHHHHHhhhc---CCCCCChHHHHHHHHHhhcc----cchhhhHHHHHHHHHHHHhhhhhhchHHHHHHHHHHH
Q 005697 311 PVRASAAGAIVGLLEN---DYMPPEWYPLLQVIVGRIGY----EDEENSILFELLSSVVGAANENVADHIPYIVSSLVAA 383 (682)
Q Consensus 311 pVrv~Aa~AL~~~l~~---~~l~p~l~~llq~Ll~~L~~----e~~e~d~l~~~L~~iVe~~~e~i~P~a~~L~~~L~~~ 383 (682)
-||-.|...+..+... ..+...+++++..+-+.-.. .. .-+.-...+..+++..+++ ...-.|+.+|++-
T Consensus 78 ~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~-~~~~~~~I~~fll~~i~~d--~~~~~l~~kl~~~ 154 (178)
T PF12717_consen 78 EIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPL-SREKRKKIYKFLLDFIDKD--KQKESLVEKLCQR 154 (178)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCcccccccccc-CHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHH
Confidence 8999999999998875 24444555555544331111 11 2223344444445554421 1233566666666
Q ss_pred HHHh
Q 005697 384 ISKH 387 (682)
Q Consensus 384 f~k~ 387 (682)
+...
T Consensus 155 ~~~~ 158 (178)
T PF12717_consen 155 FLNA 158 (178)
T ss_pred HHHH
Confidence 6554
No 41
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=94.05 E-value=0.39 Score=54.90 Aligned_cols=87 Identities=18% Similarity=0.080 Sum_probs=68.6
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHH-HHHHHHHhh
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISAD-VYSSLLKAL 299 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~-il~~ll~~L 299 (682)
|...+-.||+.++.+... .+.+-+...|...+. +++|++|..|+-++.++... +|+.+.. +++.+.+.|
T Consensus 92 n~~~~~lAL~~l~~i~~~-------~~~~~l~~~v~~ll~--~~~~~VRk~A~~~l~~i~~~-~p~~~~~~~~~~l~~lL 161 (526)
T PF01602_consen 92 NPYIRGLALRTLSNIRTP-------EMAEPLIPDVIKLLS--DPSPYVRKKAALALLKIYRK-DPDLVEDELIPKLKQLL 161 (526)
T ss_dssp SHHHHHHHHHHHHHH-SH-------HHHHHHHHHHHHHHH--SSSHHHHHHHHHHHHHHHHH-CHCCHHGGHHHHHHHHT
T ss_pred CHHHHHHHHhhhhhhccc-------chhhHHHHHHHHHhc--CCchHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhhhc
Confidence 567788888888886632 233445667778888 79999999999999998774 5556655 789999999
Q ss_pred ccCCCCCCCCcchhHHHHHHHHHh
Q 005697 300 QMLDKGDTSCYPVRASAAGAIVGL 323 (682)
Q Consensus 300 ~d~~~~~~~~~pVrv~Aa~AL~~~ 323 (682)
.|++ ..|+..|+.++..+
T Consensus 162 ~d~~------~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 162 SDKD------PSVVSAALSLLSEI 179 (526)
T ss_dssp THSS------HHHHHHHHHHHHHH
T ss_pred cCCc------chhHHHHHHHHHHH
Confidence 9888 88999999999988
No 42
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.63 E-value=18 Score=42.97 Aligned_cols=69 Identities=20% Similarity=0.219 Sum_probs=60.1
Q ss_pred HHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhc
Q 005697 247 TANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 326 (682)
Q Consensus 247 le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~ 326 (682)
+--++.+-+-.+|+ +++-|..+-|+..+|..+ ++|+...+++.+-+.|+.++ .-||=.|+.|...|++-
T Consensus 104 vllLltNslknDL~--s~nq~vVglAL~alg~i~---s~EmardlapeVe~Ll~~~~------~~irKKA~Lca~r~irK 172 (866)
T KOG1062|consen 104 LLLLLTNSLKNDLN--SSNQYVVGLALCALGNIC---SPEMARDLAPEVERLLQHRD------PYIRKKAALCAVRFIRK 172 (866)
T ss_pred HHHHHHHHHHhhcc--CCCeeehHHHHHHhhccC---CHHHhHHhhHHHHHHHhCCC------HHHHHHHHHHHHHHHHc
Confidence 44567788888999 789999999998888764 59999999999999999988 88999999999999983
No 43
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.60 E-value=0.49 Score=41.49 Aligned_cols=75 Identities=19% Similarity=0.189 Sum_probs=55.5
Q ss_pred HHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhcCC-CCCChHHHHHHHHHhhcccchhhhHH--HHHHHHHHHHhh
Q 005697 290 DVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDY-MPPEWYPLLQVIVGRIGYEDEENSIL--FELLSSVVGAAN 366 (682)
Q Consensus 290 ~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~~-l~p~l~~llq~Ll~~L~~e~~e~d~l--~~~L~~iVe~~~ 366 (682)
+.|+.++..+.||. +|||..|-.-|+.+++... -...++.++.-++..|.+++ .-=+| .+.+..+++.+.
T Consensus 3 ~~~~~al~~L~dp~------~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~D-syVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 3 ETLQEALSDLNDPL------PPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDED-SYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHHHHccCCC------cchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHHHHCh
Confidence 45777888889988 9999999999999999865 56677888888888666653 32222 556666677776
Q ss_pred hhhhc
Q 005697 367 ENVAD 371 (682)
Q Consensus 367 e~i~P 371 (682)
+++.|
T Consensus 76 ~~vl~ 80 (92)
T PF10363_consen 76 DEVLP 80 (92)
T ss_pred HHHHH
Confidence 65444
No 44
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=93.59 E-value=15 Score=43.34 Aligned_cols=118 Identities=11% Similarity=-0.041 Sum_probs=76.3
Q ss_pred ccchhhHHHHHHHHHHHHHHHhhhc----ch-----h----HHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCC-
Q 005697 219 SRIQKDYFGVLMAYGGLQEFLREQK----SE-----F----TANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLP- 284 (682)
Q Consensus 219 ~~~~~~kegaL~~lg~la~~l~~~~----~~-----~----le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~- 284 (682)
..+|...|.|++.+-.+++.++... ++ . ++.++.+- .+. ..+|+.+.--=...+-||.+.++
T Consensus 451 e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~ts---qv~-~h~h~lVqLlfmE~ivRY~kff~~ 526 (980)
T KOG2021|consen 451 EESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTS---QVL-AHDHELVQLLFMELIVRYNKFFST 526 (980)
T ss_pred cchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHc---ccc-cCCchHHHHHHHHHHHHHHHHHhc
Confidence 4589999999999999999987631 11 1 11222211 111 14677777667788888888753
Q ss_pred -hhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhc--CCCCCChHHHHHHHHHhh
Q 005697 285 -EDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN--DYMPPEWYPLLQVIVGRI 344 (682)
Q Consensus 285 -~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~--~~l~p~l~~llq~Ll~~L 344 (682)
++ .++.++..+-|+-.=|...--||..|+.-..+|+.. ..+.|++..+++.+=..|
T Consensus 527 esq----~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL 585 (980)
T KOG2021|consen 527 ESQ----KIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLL 585 (980)
T ss_pred chh----hhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 445555544443222223378999999999999874 577788877777666644
No 45
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.41 E-value=3.3 Score=48.62 Aligned_cols=81 Identities=19% Similarity=0.147 Sum_probs=70.6
Q ss_pred HHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhc-CCC
Q 005697 251 VRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN-DYM 329 (682)
Q Consensus 251 L~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~-~~l 329 (682)
+.+.+-.+|+ .|+-|+|+....++.++.+ ++.+.++++.+..||..++ .=||-.|..|+.....+ +.+
T Consensus 100 vcna~RkDLQ--HPNEyiRG~TLRFLckLkE---~ELlepl~p~IracleHrh------sYVRrNAilaifsIyk~~~~L 168 (948)
T KOG1058|consen 100 VCNAYRKDLQ--HPNEYIRGSTLRFLCKLKE---PELLEPLMPSIRACLEHRH------SYVRRNAILAIFSIYKNFEHL 168 (948)
T ss_pred HHHHHhhhcc--CchHhhcchhhhhhhhcCc---HHHhhhhHHHHHHHHhCcc------hhhhhhhheeehhHHhhhhhh
Confidence 3556667888 6888999999988877755 8999999999999999988 78999999999998887 789
Q ss_pred CCChHHHHHHHHH
Q 005697 330 PPEWYPLLQVIVG 342 (682)
Q Consensus 330 ~p~l~~llq~Ll~ 342 (682)
-|..|.++...+.
T Consensus 169 ~pDapeLi~~fL~ 181 (948)
T KOG1058|consen 169 IPDAPELIESFLL 181 (948)
T ss_pred cCChHHHHHHHHH
Confidence 9999999988876
No 46
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=93.23 E-value=0.076 Score=41.39 Aligned_cols=54 Identities=24% Similarity=0.255 Sum_probs=36.5
Q ss_pred hhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHH
Q 005697 222 QKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGE 278 (682)
Q Consensus 222 ~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~ 278 (682)
|+.+.+|+.++|.++....+..++++... ...+.+.++ ++.+-+|..|||.+|+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~-~~~L~~~L~--d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPEL-LPALIPLLQ--DDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHH-HHHHHHHTT--SSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHH-HHHHHHHHc--CCCHHHHHHHHHHHhc
Confidence 67899999999987655443222233222 234456676 5677899999999986
No 47
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=93.14 E-value=0.52 Score=55.85 Aligned_cols=116 Identities=16% Similarity=0.069 Sum_probs=85.9
Q ss_pred HHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhcC-
Q 005697 249 NLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND- 327 (682)
Q Consensus 249 ~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~- 327 (682)
-...+.+.-+++ +++|++|+-|..+++.... ++.+..++..+.+|+.|++ .=||=.||.|+..+.+.+
T Consensus 91 lLavNti~kDl~--d~N~~iR~~AlR~ls~l~~---~el~~~~~~~ik~~l~d~~------ayVRk~Aalav~kly~ld~ 159 (757)
T COG5096 91 LLAVNTIQKDLQ--DPNEEIRGFALRTLSLLRV---KELLGNIIDPIKKLLTDPH------AYVRKTAALAVAKLYRLDK 159 (757)
T ss_pred HHHHHHHHhhcc--CCCHHHHHHHHHHHHhcCh---HHHHHHHHHHHHHHccCCc------HHHHHHHHHHHHHHHhcCH
Confidence 455677788899 8999999999988877654 7888999999999999998 789999999999998743
Q ss_pred CCCCCh--HHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhhhhhchHHHHHHHH
Q 005697 328 YMPPEW--YPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSL 380 (682)
Q Consensus 328 ~l~p~l--~~llq~Ll~~L~~e~~e~d~l~~~L~~iVe~~~e~i~P~a~~L~~~L 380 (682)
.+-+.. ..++..+ ..+. +...+..++-++.+...|...+|...++..+
T Consensus 160 ~l~~~~g~~~~l~~l----~~D~-dP~Vi~nAl~sl~~i~~e~a~~~~~~~~~~i 209 (757)
T COG5096 160 DLYHELGLIDILKEL----VADS-DPIVIANALASLAEIDPELAHGYSLEVILRI 209 (757)
T ss_pred hhhhcccHHHHHHHH----hhCC-CchHHHHHHHHHHHhchhhhhhHHHHHHHHh
Confidence 333332 2333333 3332 5667788888888777776666766665544
No 48
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=93.09 E-value=14 Score=43.62 Aligned_cols=79 Identities=10% Similarity=0.144 Sum_probs=52.0
Q ss_pred chhHHHHHHHHHhhhc--CCCCCChHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHhc
Q 005697 311 PVRASAAGAIVGLLEN--DYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHM 388 (682)
Q Consensus 311 pVrv~Aa~AL~~~l~~--~~l~p~l~~llq~Ll~~L~~e~~e~d~l~~~L~~iVe~~~e~i~P~a~~L~~~L~~~f~k~~ 388 (682)
++|-..-..+.+++.- +.+-|++|.+++.+++ +.+-+|.-..+..|..++..|+.++-|+..++-+.|....-..+
T Consensus 712 ~iRsavrft~hRmI~~lg~~vlPfipklie~lL~--s~d~kEmvdfl~flsQLihkfk~~~~~ilnqmlppll~rIfsvi 789 (980)
T KOG2021|consen 712 NIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLS--STDLKEMVDFLGFLSQLIHKFKTDCYQILNQMLPPLLNRIFSVI 789 (980)
T ss_pred hhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444442 4678999999999987 22213666668889999999999999987776555554444544
Q ss_pred CCC
Q 005697 389 HPS 391 (682)
Q Consensus 389 ~~~ 391 (682)
.++
T Consensus 790 ~r~ 792 (980)
T KOG2021|consen 790 ERI 792 (980)
T ss_pred ccc
Confidence 443
No 49
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=92.73 E-value=0.14 Score=35.22 Aligned_cols=30 Identities=27% Similarity=0.278 Sum_probs=25.8
Q ss_pred HHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhc
Q 005697 291 VYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 326 (682)
Q Consensus 291 il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~ 326 (682)
+++.++++++|++ .-||..|+.||..++++
T Consensus 1 llp~l~~~l~D~~------~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPS------PEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SS------HHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCC------HHHHHHHHHHHHHHHhh
Confidence 5788999999998 89999999999998764
No 50
>PTZ00429 beta-adaptin; Provisional
Probab=92.03 E-value=14 Score=44.42 Aligned_cols=90 Identities=13% Similarity=-0.002 Sum_probs=61.7
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhH--HHHHHHHHHh
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDIS--ADVYSSLLKA 298 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l--~~il~~ll~~ 298 (682)
|+..+--||+.++++... .+.+.+...|...+. +++||+|..|..++.+.... +++.. ..+.+.+..+
T Consensus 118 Np~IRaLALRtLs~Ir~~-------~i~e~l~~~lkk~L~--D~~pYVRKtAalai~Kly~~-~pelv~~~~~~~~L~~L 187 (746)
T PTZ00429 118 SPVVRALAVRTMMCIRVS-------SVLEYTLEPLRRAVA--DPDPYVRKTAAMGLGKLFHD-DMQLFYQQDFKKDLVEL 187 (746)
T ss_pred CHHHHHHHHHHHHcCCcH-------HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhh-CcccccccchHHHHHHH
Confidence 567777777777764432 122334445556677 79999999999999997553 23322 2345566667
Q ss_pred hccCCCCCCCCcchhHHHHHHHHHhhhc
Q 005697 299 LQMLDKGDTSCYPVRASAAGAIVGLLEN 326 (682)
Q Consensus 299 L~d~~~~~~~~~pVrv~Aa~AL~~~l~~ 326 (682)
|.|++ .-|...|..+|..+.++
T Consensus 188 L~D~d------p~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 188 LNDNN------PVVASNAAAIVCEVNDY 209 (746)
T ss_pred hcCCC------ccHHHHHHHHHHHHHHh
Confidence 88887 78889999999888764
No 51
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=92.03 E-value=0.6 Score=39.45 Aligned_cols=76 Identities=24% Similarity=0.151 Sum_probs=54.8
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhc
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQ 300 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~ 300 (682)
++..+..++.++|.+.+ +...+.|. ..++ +++|.+|..|++.+|++.+ .+.++.+.+.+.
T Consensus 13 ~~~vr~~a~~~L~~~~~-------~~~~~~L~----~~l~--d~~~~vr~~a~~aL~~i~~-------~~~~~~L~~~l~ 72 (88)
T PF13646_consen 13 DPQVRAEAARALGELGD-------PEAIPALI----ELLK--DEDPMVRRAAARALGRIGD-------PEAIPALIKLLQ 72 (88)
T ss_dssp SHHHHHHHHHHHHCCTH-------HHHHHHHH----HHHT--SSSHHHHHHHHHHHHCCHH-------HHTHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCC-------HhHHHHHH----HHHc--CCCHHHHHHHHHHHHHhCC-------HHHHHHHHHHHc
Confidence 67888889999884321 22333333 3356 7999999999999999864 456777788887
Q ss_pred cCCCCCCCCcchhHHHHHHHH
Q 005697 301 MLDKGDTSCYPVRASAAGAIV 321 (682)
Q Consensus 301 d~~~~~~~~~pVrv~Aa~AL~ 321 (682)
+++ ...||-.|+.||.
T Consensus 73 ~~~-----~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 73 DDD-----DEVVREAAAEALG 88 (88)
T ss_dssp C-S-----SHHHHHHHHHHHH
T ss_pred CCC-----cHHHHHHHHhhcC
Confidence 765 3788999999984
No 52
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=91.74 E-value=11 Score=43.53 Aligned_cols=151 Identities=13% Similarity=0.128 Sum_probs=93.1
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhh
Q 005697 220 RIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKAL 299 (682)
Q Consensus 220 ~~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L 299 (682)
++.+.+|+++.+.-+....+.....+|+.+++- .|+-.+. +..+.+|-+|...+-..-++++..-+..+++.++..+
T Consensus 187 ~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp-~il~~~~--d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l 263 (569)
T KOG1242|consen 187 KSALNREAALLAFEAAQGNLGPPFEPYIVPILP-SILTNFG--DKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSL 263 (569)
T ss_pred chhhcHHHHHHHHHHHHHhcCCCCCchHHhhHH-HHHHHhh--ccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHH
Confidence 456667788888888887776433456555543 4455555 6889999999999999999998888888888888888
Q ss_pred ccCCCCCCCCcchhHHHHHHHHHhhhc--CCCCCChHHHHHHHHHhhcccc-hhhhHHHHHHHHHHHHhhh-hhhchHHH
Q 005697 300 QMLDKGDTSCYPVRASAAGAIVGLLEN--DYMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANE-NVADHIPY 375 (682)
Q Consensus 300 ~d~~~~~~~~~pVrv~Aa~AL~~~l~~--~~l~p~l~~llq~Ll~~L~~e~-~e~d~l~~~L~~iVe~~~e-~i~P~a~~ 375 (682)
.+.. -+-+..|...+..+... ..+.-.++.++-.+-+.|-+.. .-...-..+|..+.+..+. +|.+|.|.
T Consensus 264 ~~~k------WrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~ 337 (569)
T KOG1242|consen 264 LEAK------WRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPT 337 (569)
T ss_pred HHHh------hhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 7764 56667777777765553 1222222222223333222322 1233345555555444443 26666555
Q ss_pred HHHH
Q 005697 376 IVSS 379 (682)
Q Consensus 376 L~~~ 379 (682)
|...
T Consensus 338 Lld~ 341 (569)
T KOG1242|consen 338 LLDA 341 (569)
T ss_pred HHHH
Confidence 5444
No 53
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.65 E-value=0.33 Score=54.95 Aligned_cols=95 Identities=21% Similarity=0.190 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcC----ChhhHHHHHHHHHHhhc
Q 005697 225 YFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCL----PEDISADVYSSLLKALQ 300 (682)
Q Consensus 225 kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l----~~~~l~~il~~ll~~L~ 300 (682)
.-.||+++|.+...-..+..-.+..-+..++.+.++. ++...+|.-|||++|.....- ..-.-..+++.+++.|+
T Consensus 296 ~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~-s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~ 374 (514)
T KOG0166|consen 296 VTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSS-SPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQ 374 (514)
T ss_pred ccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhcc-CcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHh
Confidence 4568888888654422110011122222233344443 566679999999999986532 12233567889999999
Q ss_pred cCCCCCCCCcchhHHHHHHHHHhhhc
Q 005697 301 MLDKGDTSCYPVRASAAGAIVGLLEN 326 (682)
Q Consensus 301 d~~~~~~~~~pVrv~Aa~AL~~~l~~ 326 (682)
..+ ...|-+||-||.++...
T Consensus 375 ~~e------f~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 375 TAE------FDIRKEAAWAISNLTSS 394 (514)
T ss_pred ccc------hHHHHHHHHHHHhhccc
Confidence 887 99999999999998774
No 54
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=91.51 E-value=0.69 Score=39.08 Aligned_cols=63 Identities=24% Similarity=0.213 Sum_probs=47.7
Q ss_pred CCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhcCCCCCChHHHHHHHHH
Q 005697 263 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVG 342 (682)
Q Consensus 263 s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~~l~p~l~~llq~Ll~ 342 (682)
++++.+|..|++++|++.+ + ++++.+++.+.|++ ..||..|+.||..+=. +..++.|.+
T Consensus 11 ~~~~~vr~~a~~~L~~~~~---~----~~~~~L~~~l~d~~------~~vr~~a~~aL~~i~~--------~~~~~~L~~ 69 (88)
T PF13646_consen 11 DPDPQVRAEAARALGELGD---P----EAIPALIELLKDED------PMVRRAAARALGRIGD--------PEAIPALIK 69 (88)
T ss_dssp SSSHHHHHHHHHHHHCCTH---H----HHHHHHHHHHTSSS------HHHHHHHHHHHHCCHH--------HHTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCC---H----hHHHHHHHHHcCCC------HHHHHHHHHHHHHhCC--------HHHHHHHHH
Confidence 7899999999999996643 2 56778888888887 8999999999997622 445555555
Q ss_pred hhcc
Q 005697 343 RIGY 346 (682)
Q Consensus 343 ~L~~ 346 (682)
.+.+
T Consensus 70 ~l~~ 73 (88)
T PF13646_consen 70 LLQD 73 (88)
T ss_dssp HHTC
T ss_pred HHcC
Confidence 3434
No 55
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=91.05 E-value=6.1 Score=44.23 Aligned_cols=151 Identities=21% Similarity=0.253 Sum_probs=95.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhh-cCC------------hhhH
Q 005697 222 QKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELAS-CLP------------EDIS 288 (682)
Q Consensus 222 ~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~-~l~------------~~~l 288 (682)
...+..++.++.-+...+.-+..+....++. .++-.+.+ ...+..-||++.++-.-.+ .++ +..+
T Consensus 244 ~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~-~L~~lL~~-~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F 321 (415)
T PF12460_consen 244 SELRPQALEILIWITKALVMRGHPLATELLD-KLLELLSS-PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF 321 (415)
T ss_pred cchhHHHHHHHHHHHHHHHHcCCchHHHHHH-HHHHHhCC-hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH
Confidence 3446677777777777665433333333333 33445552 3456777777777655522 222 3355
Q ss_pred HHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhc---CCCCCChHHHHHHHHHhhcccchhhhHH---HHHHHHHH
Q 005697 289 ADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN---DYMPPEWYPLLQVIVGRIGYEDEENSIL---FELLSSVV 362 (682)
Q Consensus 289 ~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~---~~l~p~l~~llq~Ll~~L~~e~~e~d~l---~~~L~~iV 362 (682)
..+++.+++.....+ -.+|..--.||..++.+ +.+.|+++.++--+++.|..+. .+.. .+++..++
T Consensus 322 ~~~~p~L~~~~~~~~------~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~--~~v~~s~L~tL~~~l 393 (415)
T PF12460_consen 322 TQVLPKLLEGFKEAD------DEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPD--ADVLLSSLETLKMIL 393 (415)
T ss_pred HHHHHHHHHHHhhcC------hhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHH
Confidence 666667777776655 23777778888888887 4788888888888888886653 3343 55555666
Q ss_pred HHhhhhhhchHHHHHHHHHH
Q 005697 363 GAANENVADHIPYIVSSLVA 382 (682)
Q Consensus 363 e~~~e~i~P~a~~L~~~L~~ 382 (682)
+...+-+.+|...|++.|..
T Consensus 394 ~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 394 EEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred HcCHHHHHHHHHHHHHHHHh
Confidence 76667778888888777653
No 56
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=90.98 E-value=44 Score=40.48 Aligned_cols=193 Identities=12% Similarity=0.062 Sum_probs=105.1
Q ss_pred HHHHHHhhhc-CChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhcC-CCCCChHHHHHHHHHhhcccchh
Q 005697 273 NWILGELASC-LPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND-YMPPEWYPLLQVIVGRIGYEDEE 350 (682)
Q Consensus 273 ~~~l~~f~~~-l~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~-~l~p~l~~llq~Ll~~L~~e~~e 350 (682)
.|....++.. ..-+.+...+..+.+.+.-++ +++.-..|..++..|.... +.++.+..++...++.+... +
T Consensus 431 l~a~~~~~~~~~~dd~l~~l~~~~~~~l~~~e-----~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~--~ 503 (1005)
T KOG2274|consen 431 LVAAESVRIDDANDDKLIELTIMIDNGLVYQE-----SPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMD--V 503 (1005)
T ss_pred HHHHhhcccCcchHHHHHHHHHHHHhhccccc-----CHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccC--C
Confidence 3444444432 334566777777777776665 3556567788888887764 44455556667777755444 3
Q ss_pred hhHH-HHHHHHHHHHhhhh-hhchHHHHHHHHHHHHHHhcCCCCCCChhhHHhHHHHHHHHHHhhhhhchhhhhhhccCC
Q 005697 351 NSIL-FELLSSVVGAANEN-VADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSG 428 (682)
Q Consensus 351 ~d~l-~~~L~~iVe~~~e~-i~P~a~~L~~~L~~~f~k~~~~~~~~~~~~~~~~~~aLa~~~~~~~~~~~~~~~~~~~~d 428 (682)
...+ +.++.++....+.+ +.|+.|.+..-|. .+++...+ .+.-...++|+.+.. .||+..
T Consensus 504 ~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~----qlas~~s~---evl~llmE~Ls~vv~----~dpef~------- 565 (1005)
T KOG2274|consen 504 PPPVKISAVRAFCGYCKVKVLLSLQPMILDGLL----QLASKSSD---EVLVLLMEALSSVVK----LDPEFA------- 565 (1005)
T ss_pred CCchhHHHHHHHHhccCceeccccchHHHHHHH----HHcccccH---HHHHHHHHHHHHHhc----cChhhh-------
Confidence 3343 77777777666655 4556666655544 44443332 345556777766654 455431
Q ss_pred ccchhHhHHHHHHHHHHHhhhhhcccccccccCCCcchHHhHHHHHHHHHhhcCchhHHHhhhHHHHHHHHHHHH--hcc
Q 005697 429 KWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLI--GDW 506 (682)
Q Consensus 429 ~~~~~~~a~L~ti~tllq~~~~~~~~e~~~s~~~~~~~~~~le~~l~~vi~~i~~~~~~l~~~~~~~l~e~~~li--~~W 506 (682)
.+.+...+-.++.-.+ ...+.|-+....+++|.-+++--.+ ..+-.+.++......+ ..|
T Consensus 566 -as~~skI~P~~i~lF~-------------k~s~DP~V~~~~qd~f~el~q~~~~----~g~m~e~~iPslisil~~~~~ 627 (1005)
T KOG2274|consen 566 -ASMESKICPLTINLFL-------------KYSEDPQVASLAQDLFEELLQIAAN----YGPMQERLIPSLISVLQLNAD 627 (1005)
T ss_pred -hhhhcchhHHHHHHHH-------------HhcCCchHHHHHHHHHHHHHHHHHh----hcchHHHHHHHHHHHHcCccc
Confidence 1222333444444444 2334455555555666555553100 2233455555555555 566
Q ss_pred cc
Q 005697 507 HA 508 (682)
Q Consensus 507 ~~ 508 (682)
++
T Consensus 628 ~~ 629 (1005)
T KOG2274|consen 628 KA 629 (1005)
T ss_pred cc
Confidence 66
No 57
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=90.78 E-value=0.56 Score=41.52 Aligned_cols=66 Identities=20% Similarity=0.203 Sum_probs=51.4
Q ss_pred hhhhcccCCCCCcccHHHHHHHHHHhhhcCC---hhhHH-HHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhcC
Q 005697 254 RVLPLYSVSVCLPYLVASANWILGELASCLP---EDISA-DVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND 327 (682)
Q Consensus 254 ~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~---~~~l~-~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~ 327 (682)
.+...+. ++++.+|..|+++++.++...+ ...+. .+++.+++.|.+++ ..||..|+.||.++..+.
T Consensus 11 ~l~~~l~--~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~------~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 11 ALVSLLS--SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED------EEVVKAALWALRNLAAGP 80 (120)
T ss_pred HHHHHHH--cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCC------HHHHHHHHHHHHHHccCc
Confidence 3444455 5678999999999999987532 22333 78888999998877 899999999999998864
No 58
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=89.94 E-value=27 Score=42.89 Aligned_cols=93 Identities=17% Similarity=0.030 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHhhhcc--hhHHHHHH-HhhhhcccC-CCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHH-----HH
Q 005697 227 GVLMAYGGLQEFLREQKS--EFTANLVR-SRVLPLYSV-SVCLPYLVASANWILGELASCLPEDISADVYSSL-----LK 297 (682)
Q Consensus 227 gaL~~lg~la~~l~~~~~--~~le~fL~-~~VlP~l~~-~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~l-----l~ 297 (682)
|+..+++-+|....-..+ +-+.+.+. ....-+-.. -+.--.+|-.||.++=-|+.+.++..+..+++.+ ..
T Consensus 399 gacLaLAELA~rGlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~ 478 (1133)
T KOG1943|consen 399 GACLALAELALRGLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIV 478 (1133)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHH
Confidence 999999888865322111 01112211 111111110 0334589999999998898887666665555543 35
Q ss_pred hhccCCCCCCCCcchhHHHHHHHHHhhh
Q 005697 298 ALQMLDKGDTSCYPVRASAAGAIVGLLE 325 (682)
Q Consensus 298 ~L~d~~~~~~~~~pVrv~Aa~AL~~~l~ 325 (682)
++-|++ +-+|-+|+.|++..+-
T Consensus 479 AlFDre------vncRRAAsAAlqE~VG 500 (1133)
T KOG1943|consen 479 ALFDRE------VNCRRAASAALQENVG 500 (1133)
T ss_pred HhcCch------hhHhHHHHHHHHHHhc
Confidence 556777 8999999999998754
No 59
>PRK09687 putative lyase; Provisional
Probab=89.41 E-value=2.5 Score=44.76 Aligned_cols=79 Identities=14% Similarity=0.022 Sum_probs=56.8
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhc
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQ 300 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~ 300 (682)
+|..+.+|..++|.+.+. ..+ ..+++.+. ++.+.+|..|.+.+|++... ++ .+.+.+++.|.
T Consensus 141 ~~~VR~~a~~aLg~~~~~------~ai-----~~L~~~L~--d~~~~VR~~A~~aLg~~~~~-~~----~~~~~L~~~L~ 202 (280)
T PRK09687 141 STNVRFAVAFALSVINDE------AAI-----PLLINLLK--DPNGDVRNWAAFALNSNKYD-NP----DIREAFVAMLQ 202 (280)
T ss_pred CHHHHHHHHHHHhccCCH------HHH-----HHHHHHhc--CCCHHHHHHHHHHHhcCCCC-CH----HHHHHHHHHhc
Confidence 678888988888765422 112 23345566 67889999999999988221 22 46677888888
Q ss_pred cCCCCCCCCcchhHHHHHHHHHh
Q 005697 301 MLDKGDTSCYPVRASAAGAIVGL 323 (682)
Q Consensus 301 d~~~~~~~~~pVrv~Aa~AL~~~ 323 (682)
|++ ..||..|+.||..+
T Consensus 203 D~~------~~VR~~A~~aLg~~ 219 (280)
T PRK09687 203 DKN------EEIRIEAIIGLALR 219 (280)
T ss_pred CCC------hHHHHHHHHHHHcc
Confidence 887 78999999999864
No 60
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.34 E-value=26 Score=40.22 Aligned_cols=53 Identities=11% Similarity=0.149 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhc--CCCCCChHHHHHHHHHhhcc
Q 005697 287 ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN--DYMPPEWYPLLQVIVGRIGY 346 (682)
Q Consensus 287 ~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~--~~l~p~l~~llq~Ll~~L~~ 346 (682)
.+..+++-++.|+.|++ .-||.+||.++.+.... ..+.++-..+...+.+ ++.
T Consensus 81 Y~~~iv~Pv~~cf~D~d------~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~k-lsa 135 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQD------SQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCK-LSA 135 (675)
T ss_pred HHHHhhHHHHHhccCcc------ceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHH-Hhc
Confidence 68899999999999998 89999999999998774 5777888888888888 543
No 61
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=89.00 E-value=4.3 Score=41.02 Aligned_cols=92 Identities=13% Similarity=0.034 Sum_probs=64.9
Q ss_pred hhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCC--------hhhHHHHHH
Q 005697 222 QKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLP--------EDISADVYS 293 (682)
Q Consensus 222 ~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~--------~~~l~~il~ 293 (682)
-..+++|..++..+..... +...++...+.+... +.+|-+|.+++.++...-...+ ...+..+.+
T Consensus 108 ~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~--~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~ 180 (228)
T PF12348_consen 108 KFIREAANNALDAIIESCS-----YSPKILLEILSQGLK--SKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVK 180 (228)
T ss_dssp HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT---S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHH
Confidence 4567888888887766543 122333455556677 7999999999988888765433 223578999
Q ss_pred HHHHhhccCCCCCCCCcchhHHHHHHHHHhhhc
Q 005697 294 SLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 326 (682)
Q Consensus 294 ~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~ 326 (682)
.+.+++.|++ ..||-.|-.++..|..+
T Consensus 181 ~l~~~l~D~~------~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 181 ALVKLLSDAD------PEVREAARECLWALYSH 207 (228)
T ss_dssp HHHHHHTSS-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCC------HHHHHHHHHHHHHHHHH
Confidence 9999999998 89999999999998774
No 62
>PRK09687 putative lyase; Provisional
Probab=88.30 E-value=8 Score=40.96 Aligned_cols=119 Identities=12% Similarity=-0.011 Sum_probs=73.7
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhc
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQ 300 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~ 300 (682)
++..+..|..++|.+...-.. .....+ ....+.+. ++++.+|..|.+.+|++.+ ...++.++++|.
T Consensus 104 d~~VR~~A~~aLG~~~~~~~~----~~~~a~-~~l~~~~~--D~~~~VR~~a~~aLg~~~~-------~~ai~~L~~~L~ 169 (280)
T PRK09687 104 SACVRASAINATGHRCKKNPL----YSPKIV-EQSQITAF--DKSTNVRFAVAFALSVIND-------EAAIPLLINLLK 169 (280)
T ss_pred CHHHHHHHHHHHhcccccccc----cchHHH-HHHHHHhh--CCCHHHHHHHHHHHhccCC-------HHHHHHHHHHhc
Confidence 577788888888886533211 111111 12334455 5788999999999987753 247788899999
Q ss_pred cCCCCCCCCcchhHHHHHHHHHhhhcCCCCCChHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhh
Q 005697 301 MLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANE 367 (682)
Q Consensus 301 d~~~~~~~~~pVrv~Aa~AL~~~l~~~~l~p~l~~llq~Ll~~L~~e~~e~d~l~~~L~~iVe~~~e 367 (682)
|++ .-||..|+.||+.+ .+.-+.+...|.+.|..+ +.+.=..++..+-+..++
T Consensus 170 d~~------~~VR~~A~~aLg~~------~~~~~~~~~~L~~~L~D~--~~~VR~~A~~aLg~~~~~ 222 (280)
T PRK09687 170 DPN------GDVRNWAAFALNSN------KYDNPDIREAFVAMLQDK--NEEIRIEAIIGLALRKDK 222 (280)
T ss_pred CCC------HHHHHHHHHHHhcC------CCCCHHHHHHHHHHhcCC--ChHHHHHHHHHHHccCCh
Confidence 888 67999999999976 222335555566644332 222224444444443333
No 63
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=87.62 E-value=37 Score=40.28 Aligned_cols=251 Identities=14% Similarity=0.095 Sum_probs=143.7
Q ss_pred HHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcC---Chh-hHHHHHHHHHHhhccCCCCCC
Q 005697 232 YGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCL---PED-ISADVYSSLLKALQMLDKGDT 307 (682)
Q Consensus 232 lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l---~~~-~l~~il~~ll~~L~d~~~~~~ 307 (682)
+|.+...+....++++.+ +...++-.|. ++.|-.|-+|..++|..+..+ .++ .+..+=..+...|....++
T Consensus 782 fg~V~~~lg~r~kpylpq-i~stiL~rLn--nksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypE-- 856 (1172)
T KOG0213|consen 782 FGTVVNALGGRVKPYLPQ-ICSTILWRLN--NKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPE-- 856 (1172)
T ss_pred HHHHHHHHhhccccchHH-HHHHHHHHhc--CCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHH--
Confidence 344444444333455533 3445667777 799999999999999999874 233 3333334445666655433
Q ss_pred CCcchhHHHHHHHHHhhhcCCCCCChHHHHHHHHHhhcccc-hhhhHHHHHHHHHHHHhhhhhhc-hHHHHHHHHHHHHH
Q 005697 308 SCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANENVAD-HIPYIVSSLVAAIS 385 (682)
Q Consensus 308 ~~~pVrv~Aa~AL~~~l~~~~l~p~l~~llq~Ll~~L~~e~-~e~d~l~~~L~~iVe~~~e~i~P-~a~~L~~~L~~~f~ 385 (682)
.++-=+.|..||.+.+....+.|=+..|+-.|..+|.|.. +--+.-...+.+|..+..|-+.+ ---.|+-.|+..+.
T Consensus 857 -vLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLk 935 (1172)
T KOG0213|consen 857 -VLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLK 935 (1172)
T ss_pred -HHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHH
Confidence 2555567777777777666777777777777777676653 11233366778888888887766 22457777777664
Q ss_pred HhcCCCCCCChhhHHhHHHHHHHHHHhhhhhchhhhhhhccCCccchhHh-HHHHHHHHHHHhhhhhcccccccccCCCc
Q 005697 386 KHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQA-AIAKAFSALLQQAWLTHIQPLECEVSAPP 464 (682)
Q Consensus 386 k~~~~~~~~~~~~~~~~~~aLa~~~~~~~~~~~~~~~~~~~~d~~~~~~~-a~L~ti~tllq~~~~~~~~e~~~s~~~~~ 464 (682)
.+-+ .+...+.+++|.++.++++-+.=..-++.- +..+.+. +|-.+-..|+. -+ +.
T Consensus 936 ahkK-------~iRRaa~nTfG~IakaIGPqdVLatLlnnL--kvqeRq~RvcTtvaIaIVa-----------E~--c~- 992 (1172)
T KOG0213|consen 936 AHKK-------EIRRAAVNTFGYIAKAIGPQDVLATLLNNL--KVQERQNRVCTTVAIAIVA-----------ET--CG- 992 (1172)
T ss_pred HHHH-------HHHHHHHhhhhHHHHhcCHHHHHHHHHhcc--hHHHHHhchhhhhhhhhhh-----------hh--cC-
Confidence 4421 355567788888888887543211111110 0111111 12222223331 00 00
Q ss_pred chHHhHHHHHHHHHhhcCchhHHHhhhHHHHHHHHHHHHhcccchhhhhhchHHHHHHHHHh
Q 005697 465 SCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVN 526 (682)
Q Consensus 465 ~~~~~le~~l~~vi~~i~~~~~~l~~~~~~~l~e~~~li~~W~~~e~~~~~~~~dyl~evi~ 526 (682)
.-.++|.+++--.+++.-.||++.--+.-+++-+ .+++-||+--|.|
T Consensus 993 -----pFtVLPalmneYrtPe~nVQnGVLkalsf~Feyi----------gemskdYiyav~P 1039 (1172)
T KOG0213|consen 993 -----PFTVLPALMNEYRTPEANVQNGVLKALSFMFEYI----------GEMSKDYIYAVTP 1039 (1172)
T ss_pred -----chhhhHHHHhhccCchhHHHHhHHHHHHHHHHHH----------HHHhhhHHHHhhH
Confidence 1245677777655666666887654333332221 4556778888888
No 64
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=87.60 E-value=5.9 Score=45.77 Aligned_cols=93 Identities=16% Similarity=0.179 Sum_probs=61.1
Q ss_pred cccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhcCCCCCChHHHHHHHHHhhc
Q 005697 266 PYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIG 345 (682)
Q Consensus 266 p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~~l~p~l~~llq~Ll~~L~ 345 (682)
+=.+.=|.-++.+|-..| |+.-.+.+++.+....|.| ..||+.|.++|-.+|.+. +-+++.+...|.+.|.
T Consensus 36 ~k~K~Laaq~I~kffk~F-P~l~~~Ai~a~~DLcEDed------~~iR~~aik~lp~~ck~~--~~~v~kvaDvL~QlL~ 106 (556)
T PF05918_consen 36 PKEKRLAAQFIPKFFKHF-PDLQEEAINAQLDLCEDED------VQIRKQAIKGLPQLCKDN--PEHVSKVADVLVQLLQ 106 (556)
T ss_dssp HHHHHHHHHHHHHHHCC--GGGHHHHHHHHHHHHT-SS------HHHHHHHHHHGGGG--T----T-HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhC-hhhHHHHHHHHHHHHhccc------HHHHHHHHHhHHHHHHhH--HHHHhHHHHHHHHHHh
Confidence 445666666677776655 4466788899999999888 899999999999999852 3356666677777555
Q ss_pred ccc-hhhhHHHHHHHHHHHHhhh
Q 005697 346 YED-EENSILFELLSSVVGAANE 367 (682)
Q Consensus 346 ~e~-~e~d~l~~~L~~iVe~~~e 367 (682)
.++ .|.+.+-.+|.++...-..
T Consensus 107 tdd~~E~~~v~~sL~~ll~~d~k 129 (556)
T PF05918_consen 107 TDDPVELDAVKNSLMSLLKQDPK 129 (556)
T ss_dssp ---HHHHHHHHHHHHHHHHH-HH
T ss_pred cccHHHHHHHHHHHHHHHhcCcH
Confidence 555 5777888888777655443
No 65
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=87.11 E-value=17 Score=38.07 Aligned_cols=143 Identities=14% Similarity=0.159 Sum_probs=96.2
Q ss_pred hhcccCCCCCcccHHHHHHHHHHhhhcC-----ChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhcCCCC
Q 005697 256 LPLYSVSVCLPYLVASANWILGELASCL-----PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMP 330 (682)
Q Consensus 256 lP~l~~~s~~p~LrarA~~~l~~f~~~l-----~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~~l~ 330 (682)
-|.|+ +..+..|+||..+++..-+.+ +.+...-+++-..+.|.|.. .| ..|..|+..++....+.
T Consensus 5 g~~Lt--sed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~-------~~-~~~l~gl~~L~~~~~~~ 74 (262)
T PF14500_consen 5 GEYLT--SEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHA-------CV-QPALKGLLALVKMKNFS 74 (262)
T ss_pred hhhhC--CCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHh-------hH-HHHHHHHHHHHhCcCCC
Confidence 35667 789999999999988766544 45566667777788886543 23 34477788887766554
Q ss_pred -CChHHHHHHHHHhhcccc-h--hhhHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHhcCCCCCCChhhHHhHHHHH
Q 005697 331 -PEWYPLLQVIVGRIGYED-E--ENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAAL 406 (682)
Q Consensus 331 -p~l~~llq~Ll~~L~~e~-~--e~d~l~~~L~~iVe~~~e~i~P~a~~L~~~L~~~f~k~~~~~~~~~~~~~~~~~~aL 406 (682)
.....+++.+++....+. . +--.+.+.++.+++++.+.+....... +..|.+.+...-| |+..-.+|+-+
T Consensus 75 ~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~f----v~~~i~~~~gEkD--PRnLl~~F~l~ 148 (262)
T PF14500_consen 75 PESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDF----VYGFIQLIDGEKD--PRNLLLSFKLL 148 (262)
T ss_pred hhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHH----HHHHHHHhccCCC--HHHHHHHHHHH
Confidence 346678888877444333 1 233368899999999998885555554 4445555566666 46666677777
Q ss_pred HHHHHhhh
Q 005697 407 ALMAQSWE 414 (682)
Q Consensus 407 a~~~~~~~ 414 (682)
-.+.+.+.
T Consensus 149 ~~i~~~~~ 156 (262)
T PF14500_consen 149 KVILQEFD 156 (262)
T ss_pred HHHHHhcc
Confidence 77766654
No 66
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=87.01 E-value=5.2 Score=39.58 Aligned_cols=90 Identities=17% Similarity=0.157 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhc---CCCCCChHHHHHHHHHhhcccc-hhhhHHHHHHHHH--
Q 005697 288 SADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN---DYMPPEWYPLLQVIVGRIGYED-EENSILFELLSSV-- 361 (682)
Q Consensus 288 l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~---~~l~p~l~~llq~Ll~~L~~e~-~e~d~l~~~L~~i-- 361 (682)
...+++.....|...+ -|-|.-|..++..++++ +.+.|.+++++-.+-++|.... +-....+++|+.+
T Consensus 36 y~~~Lpif~dGL~Et~------~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~ 109 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETE------HPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVT 109 (183)
T ss_pred hhhHHHHHHhhhhccC------ccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 4567777788888777 79999999999999987 4788999999999888887653 2344557777777
Q ss_pred -HHHhhhhhhchHHHHHHHHHHH
Q 005697 362 -VGAANENVADHIPYIVSSLVAA 383 (682)
Q Consensus 362 -Ve~~~e~i~P~a~~L~~~L~~~ 383 (682)
-+..++.+.||..+|.+.+.-.
T Consensus 110 ~~~~vG~aLvPyyrqLLp~ln~f 132 (183)
T PF10274_consen 110 SSDMVGEALVPYYRQLLPVLNLF 132 (183)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHH
Confidence 5777899999999888876543
No 67
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.40 E-value=5.6 Score=47.00 Aligned_cols=131 Identities=17% Similarity=0.124 Sum_probs=81.4
Q ss_pred cccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhcC-CCCCChHHH
Q 005697 258 LYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND-YMPPEWYPL 336 (682)
Q Consensus 258 ~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~-~l~p~l~~l 336 (682)
.|. +|++.+|+-|+.+++-.+= +-...-++-++-+|..|+. .-||=.||.||..+-+.+ .-.+.+..+
T Consensus 116 ~L~--DpN~LiRasALRvlSsIRv---p~IaPI~llAIk~~~~D~s------~yVRk~AA~AIpKLYsLd~e~k~qL~e~ 184 (968)
T KOG1060|consen 116 ALK--DPNQLIRASALRVLSSIRV---PMIAPIMLLAIKKAVTDPS------PYVRKTAAHAIPKLYSLDPEQKDQLEEV 184 (968)
T ss_pred hhc--CCcHHHHHHHHHHHHhcch---hhHHHHHHHHHHHHhcCCc------HHHHHHHHHhhHHHhcCChhhHHHHHHH
Confidence 355 7999999988877766543 2233446667778888887 889999999999987753 444567777
Q ss_pred HHHHHHhhcccchhhhHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHhcCCCCCCChhhHHhHHHHHHHHHHh
Q 005697 337 LQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQS 412 (682)
Q Consensus 337 lq~Ll~~L~~e~~e~d~l~~~L~~iVe~~~e~i~P~a~~L~~~L~~~f~k~~~~~~~~~~~~~~~~~~aLa~~~~~ 412 (682)
+..|++ .. ..-.+-.++.++=+...+. .+|+..=-.-+.+++.+. +.|.|++ +++.|.-.|+.
T Consensus 185 I~~LLa----D~-splVvgsAv~AF~evCPer-----ldLIHknyrklC~ll~dv-deWgQvv--lI~mL~RYAR~ 247 (968)
T KOG1060|consen 185 IKKLLA----DR-SPLVVGSAVMAFEEVCPER-----LDLIHKNYRKLCRLLPDV-DEWGQVV--LINMLTRYARH 247 (968)
T ss_pred HHHHhc----CC-CCcchhHHHHHHHHhchhH-----HHHhhHHHHHHHhhccch-hhhhHHH--HHHHHHHHHHh
Confidence 777765 11 1222344455544444443 344444333334444444 3488865 56777766664
No 68
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.26 E-value=80 Score=37.52 Aligned_cols=85 Identities=12% Similarity=0.054 Sum_probs=56.2
Q ss_pred HHHHHhcCCCCCCCCCccccchhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhh
Q 005697 201 VLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELA 280 (682)
Q Consensus 201 i~~~L~~~~~~~~~~~~~~~~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~ 280 (682)
+.+-|.-|-...|| ..|+-.|.+++-+... +...+ +-....|+..+. +..+-+|-||+.++.-.
T Consensus 300 CvqKLr~fiedsDq--------NLKYlgLlam~KI~kt----Hp~~V-qa~kdlIlrcL~--DkD~SIRlrALdLl~gm- 363 (877)
T KOG1059|consen 300 CVQKLRIFIEDSDQ--------NLKYLGLLAMSKILKT----HPKAV-QAHKDLILRCLD--DKDESIRLRALDLLYGM- 363 (877)
T ss_pred HHHHHhhhhhcCCc--------cHHHHHHHHHHHHhhh----CHHHH-HHhHHHHHHHhc--cCCchhHHHHHHHHHHH-
Confidence 44455554444432 3377777777654432 22223 333457788888 67888999999887544
Q ss_pred hcCChhhHHHHHHHHHHhhccCC
Q 005697 281 SCLPEDISADVYSSLLKALQMLD 303 (682)
Q Consensus 281 ~~l~~~~l~~il~~ll~~L~d~~ 303 (682)
.+++++.+|..-++.++...+
T Consensus 364 --VskkNl~eIVk~LM~~~~~ae 384 (877)
T KOG1059|consen 364 --VSKKNLMEIVKTLMKHVEKAE 384 (877)
T ss_pred --hhhhhHHHHHHHHHHHHHhcc
Confidence 468899999999999998776
No 69
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=84.83 E-value=6.2 Score=35.50 Aligned_cols=78 Identities=12% Similarity=0.289 Sum_probs=59.8
Q ss_pred CCCCChHHHHHHHHHhhcc---cc--hhhhHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHhcCCCCCCChhhHHhH
Q 005697 328 YMPPEWYPLLQVIVGRIGY---ED--EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERG 402 (682)
Q Consensus 328 ~l~p~l~~llq~Ll~~L~~---e~--~e~d~l~~~L~~iVe~~~e~i~P~a~~L~~~L~~~f~k~~~~~~~~~~~~~~~~ 402 (682)
+++|++..+++.+-..+.+ .. .+....+..|+.+++..++.+.++.|+|+..|..++ +. +.+.+.+
T Consensus 4 fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal-----~~----~~l~~~a 74 (107)
T PF08064_consen 4 FLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSAL-----EI----PELREEA 74 (107)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh-----CC----hhhHHHH
Confidence 4567777888777775544 11 356667999999999999999999999999987775 11 2477888
Q ss_pred HHHHHHHHHhhh
Q 005697 403 FAALALMAQSWE 414 (682)
Q Consensus 403 ~~aLa~~~~~~~ 414 (682)
+++...+.++.+
T Consensus 75 l~~W~~fi~~L~ 86 (107)
T PF08064_consen 75 LSCWNCFIKTLD 86 (107)
T ss_pred HHHHHHHHHHCC
Confidence 999999988874
No 70
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.62 E-value=68 Score=41.14 Aligned_cols=165 Identities=15% Similarity=0.171 Sum_probs=99.5
Q ss_pred HHHHHhcCCCCCCCCCccccchhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccC--CCCCcccHHHHHHHHHH
Q 005697 201 VLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSV--SVCLPYLVASANWILGE 278 (682)
Q Consensus 201 i~~~L~~~~~~~~~~~~~~~~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~--~s~~p~LrarA~~~l~~ 278 (682)
+.+-|-+|+=.|+ .+..+ ++.++-..+....+..++.++ ++|+-+|-. ++..=..|-.+|-.+..
T Consensus 999 LIPrLyRY~yDP~--------~~Vq~----aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~~lt~kewRVReasclAL~d 1065 (1702)
T KOG0915|consen 999 LIPRLYRYQYDPD--------KKVQD----AMTSIWNALITDSKKVVDEYL-NEILDELLVNLTSKEWRVREASCLALAD 1065 (1702)
T ss_pred hhHHHhhhccCCc--------HHHHH----HHHHHHHHhccChHHHHHHHH-HHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 6678888876553 22233 455555555432233343333 344444331 14555778888888877
Q ss_pred hhhc--CC--hhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHH---hhhc--CCC-CCChHHHHHHHHHhhcc--
Q 005697 279 LASC--LP--EDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVG---LLEN--DYM-PPEWYPLLQVIVGRIGY-- 346 (682)
Q Consensus 279 f~~~--l~--~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~---~l~~--~~l-~p~l~~llq~Ll~~L~~-- 346 (682)
+-.. ++ .+.+.+++..+.+.+.|=. =-||..|-+|... ++-- +.- ..--..++..++..|-.
T Consensus 1066 Ll~g~~~~~~~e~lpelw~~~fRvmDDIK------EsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~g 1139 (1702)
T KOG0915|consen 1066 LLQGRPFDQVKEKLPELWEAAFRVMDDIK------ESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEG 1139 (1702)
T ss_pred HHcCCChHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccC
Confidence 7543 32 4678899999999998754 3688776555544 4321 211 11223344444443321
Q ss_pred ---cchhhhHH-HHHHHHHHHHhhhhhhchHHHHHHHHHHHH
Q 005697 347 ---EDEENSIL-FELLSSVVGAANENVADHIPYIVSSLVAAI 384 (682)
Q Consensus 347 ---e~~e~d~l-~~~L~~iVe~~~e~i~P~a~~L~~~L~~~f 384 (682)
..+|...+ ..++..++...+.++.||.++|+..|.+.+
T Consensus 1140 ims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~ 1181 (1702)
T KOG0915|consen 1140 IMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAY 1181 (1702)
T ss_pred cccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHc
Confidence 11254444 788999999999999999999999998887
No 71
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.36 E-value=65 Score=38.66 Aligned_cols=113 Identities=19% Similarity=0.063 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHhhhcchhHHHHHHHhh--hhccc-CCCCCcccHHHHHHHHHHhhhcC--ChhhHHHHHHHHHHhh
Q 005697 225 YFGVLMAYGGLQEFLREQKSEFTANLVRSRV--LPLYS-VSVCLPYLVASANWILGELASCL--PEDISADVYSSLLKAL 299 (682)
Q Consensus 225 kegaL~~lg~la~~l~~~~~~~le~fL~~~V--lP~l~-~~s~~p~LrarA~~~l~~f~~~l--~~~~l~~il~~ll~~L 299 (682)
|=.+|..+|.+-.+..+ +++++..+.| +|.+= .+..++.||++-.-++.+|...+ .+.....++--++..-
T Consensus 589 k~~VL~~ls~lI~r~~e----~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~ 664 (978)
T KOG1993|consen 589 KTSVLNLLSTLIERVSE----HIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELS 664 (978)
T ss_pred HHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHh
Confidence 44455555555444433 3444444333 56653 23689999999999999998864 3344444444444544
Q ss_pred ccCC-CCCCCCcchhHHHHHHHH-Hhhhc-CCCCCChHHHHHHHHHhhc
Q 005697 300 QMLD-KGDTSCYPVRASAAGAIV-GLLEN-DYMPPEWYPLLQVIVGRIG 345 (682)
Q Consensus 300 ~d~~-~~~~~~~pVrv~Aa~AL~-~~l~~-~~l~p~l~~llq~Ll~~L~ 345 (682)
.|++ ++ .+.=.+-+.+|- .++.+ ..+.|.+..++..++..+.
T Consensus 665 ~D~~sP~----hv~L~EDgmeLW~~~L~n~~~l~p~ll~L~p~l~~~iE 709 (978)
T KOG1993|consen 665 TDPSSPE----HVYLLEDGMELWLTTLMNSQKLTPELLLLFPHLLYIIE 709 (978)
T ss_pred cCCCCCc----eeehhhhHHHHHHHHHhcccccCHHHHHHHHHHHHHHH
Confidence 5554 22 222233444443 34555 5788888888888887553
No 72
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=81.24 E-value=12 Score=33.84 Aligned_cols=78 Identities=10% Similarity=0.278 Sum_probs=60.3
Q ss_pred CCCCChHHHHHHHHHhhcccc-----hhhhHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHhcCCCCCCChhhHHhH
Q 005697 328 YMPPEWYPLLQVIVGRIGYED-----EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERG 402 (682)
Q Consensus 328 ~l~p~l~~llq~Ll~~L~~e~-----~e~d~l~~~L~~iVe~~~e~i~P~a~~L~~~L~~~f~k~~~~~~~~~~~~~~~~ 402 (682)
++++++..+++..-..+.+.. .|......+|+.+++..+..+.++.|+|+..|..++ +. +.+.+.+
T Consensus 4 fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL-----~~----~eL~~~a 74 (107)
T smart00802 4 FLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSAL-----EI----PELRSLA 74 (107)
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----Cc----hhHHHHH
Confidence 456777788877777554321 245557889999999999999999999999998776 22 3588899
Q ss_pred HHHHHHHHHhhh
Q 005697 403 FAALALMAQSWE 414 (682)
Q Consensus 403 ~~aLa~~~~~~~ 414 (682)
|+++..+.++.+
T Consensus 75 l~~W~~~i~~L~ 86 (107)
T smart00802 75 LRCWHVLIKTLK 86 (107)
T ss_pred HHHHHHHHHhCC
Confidence 999999999874
No 73
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=81.23 E-value=18 Score=40.04 Aligned_cols=185 Identities=12% Similarity=0.148 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHhcCCCCCCChhhHHhHHHHHHHHHHhhhhhchhhhhhhccCCccchh
Q 005697 354 LFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESG 433 (682)
Q Consensus 354 l~~~L~~iVe~~~e~i~P~a~~L~~~L~~~f~k~~~~~~~~~~~~~~~~~~aLa~~~~~~~~~~~~~~~~~~~~d~~~~~ 433 (682)
+...+....++|+|+..||++..++..-+.+.+...... ++.-
T Consensus 116 i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~-------------------------------------~D~l 158 (370)
T PF08506_consen 116 ICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPK-------------------------------------YDIL 158 (370)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGG-------------------------------------GHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-------------------------------------ccHH
Confidence 566677778999999999999988776666544321110 0111
Q ss_pred HhHHHHHHHHHHHhhhhhcccccccccCCCcchHHh-HHHHHHHHHhhcCchhHHHhhhHHHHHHHHHHHHhcccchhhh
Q 005697 434 QAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDD-SSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEET 512 (682)
Q Consensus 434 ~~a~L~ti~tllq~~~~~~~~e~~~s~~~~~~~~~~-le~~l~~vi~~i~~~~~~l~~~~~~~l~e~~~li~~W~~~e~~ 512 (682)
...+++.+.++.+..+.. ..+. .++.+.. ++.++.|.+.+.+++.++.+.+=.||+.-=.+ ..+.
T Consensus 159 v~~al~FL~~v~~~~~~~------~lf~-~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e-------~sd~ 224 (370)
T PF08506_consen 159 VSKALQFLSSVAESPHHK------NLFE-NKPHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLE-------GSDS 224 (370)
T ss_dssp HHHHHHHHHHHHTSHHHH------TTT--SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSC-------SS--
T ss_pred HHHHHHHHHHHHcchhHH------HHhC-CHHHHHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhcc-------cccc
Confidence 222666666666432210 0111 2334443 46788999999988999989888888876332 1222
Q ss_pred h--hchHHHHHHHHHhhhccccccccccccCCCCCCCCCChhHHHHHHHHHHhhhhh---cCchhHHH----HhHhHHHH
Q 005697 513 E--DLSVFDCIKEIVNLHSKYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAIL---QYPSATWR----ACSCVHTL 583 (682)
Q Consensus 513 ~--~~~~~dyl~evi~l~~~~~L~Nfi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~----ac~~~~~l 583 (682)
. ..+|.+++..+.. . +.+.+.+++..++..-.. ++|+..|| |+.++-++
T Consensus 225 ~TrR~AA~dfl~~L~~-----~-----------------~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~al 282 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCK-----K-----------------FEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGAL 282 (370)
T ss_dssp -SHHHHHHHHHHHHHH-----H-----------------HHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH-----H-----------------HhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHH
Confidence 2 4588888888776 2 223333333322222111 34555666 66666666
Q ss_pred hhcccccccccccch-----hhHHHHHHHHHhhhh
Q 005697 584 LHVPKYSFETEGVKQ-----SLTISFSCAAFSRFR 613 (682)
Q Consensus 584 l~~~~~~~~~~~~~~-----~~~~~f~~~a~~~~~ 613 (682)
-.+. .+-. .|+.+ .+...|.+-+..-|+
T Consensus 283 a~k~-~t~~-~Gvt~~~~~v~v~~Ff~~~v~peL~ 315 (370)
T PF08506_consen 283 ASKG-STTK-SGVTQTNELVDVVDFFSQHVLPELQ 315 (370)
T ss_dssp HBSS---BT-TB-S-B-TTS-HHHHHHHHTCHHHH
T ss_pred Hhhh-cccc-CCcccccccccHHHHHHHHhHHHhc
Confidence 5554 2211 24433 455666666666665
No 74
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=80.87 E-value=31 Score=36.07 Aligned_cols=169 Identities=11% Similarity=0.127 Sum_probs=95.0
Q ss_pred HHHHHhcCCCCCCCCCccccchhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCC---CCcccHHHHHHHHH
Q 005697 201 VLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSV---CLPYLVASANWILG 277 (682)
Q Consensus 201 i~~~L~~~~~~~~~~~~~~~~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s---~~p~LrarA~~~l~ 277 (682)
++++++-|+....++- +...-...-.||-++-++|..=.. ...++..=+-.++.|.++.++ ++-+||=.++-++|
T Consensus 44 LqEIisiYp~l~~~~L-t~~~snRVcnaLaLlQ~vAshpet-r~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIg 121 (262)
T PF04078_consen 44 LQEIISIYPALSPPNL-TARQSNRVCNALALLQCVASHPET-RMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIG 121 (262)
T ss_dssp HHHHHGGGGGTTTT----HHHHHHHHHHHHHHHHHHH-TTT-HHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccCCCccc-CHHHHHHHHHHHHHHHHHHcChHH-HHHHHHcCchhhehhhhhccccccccchhhHhHHHHHH
Confidence 6777887876543221 111223455666666666654211 222332222234566665422 34589988887777
Q ss_pred HhhhcCChhhH-----HHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhcCCCCCChHHHHHHHHHhhcccchhhh
Q 005697 278 ELASCLPEDIS-----ADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENS 352 (682)
Q Consensus 278 ~f~~~l~~~~l-----~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~~l~p~l~~llq~Ll~~L~~e~~e~d 352 (682)
...+.=+++.. .++++..++.|...+ -.-|+-|..-++.++.++. +|--.=...+ -.-
T Consensus 122 aLvK~d~~evi~fLl~tEiiplcLr~me~Gs------elSKtvAtfIlqKIL~dd~----------GL~yiC~t~e-Rf~ 184 (262)
T PF04078_consen 122 ALVKTDDPEVISFLLQTEIIPLCLRIMEFGS------ELSKTVATFILQKILLDDV----------GLNYICQTAE-RFF 184 (262)
T ss_dssp HHHTT--HHHHHHHHCTTHHHHHHHHHHHS-------HHHHHHHHHHHHHHHHSHH----------HHHHHTSSHH-HHH
T ss_pred HHHcCCcHHHHHHHHhhchHHHHHHHHHhcc------HHHHHHHHHHHHHHHcchh----------HHHHHhcCHH-HHH
Confidence 77663344422 456788888887665 5678888887777766541 1111001111 345
Q ss_pred HHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHhcCCC
Q 005697 353 ILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPS 391 (682)
Q Consensus 353 ~l~~~L~~iVe~~~e~i~P~a~~L~~~L~~~f~k~~~~~ 391 (682)
.+..+|..+|....++ ..+.|..+++..++|+..++
T Consensus 185 av~~vL~~mV~~l~~~---pS~RLLKhIIrCYlRLsdnp 220 (262)
T PF04078_consen 185 AVAMVLNKMVEQLVKQ---PSPRLLKHIIRCYLRLSDNP 220 (262)
T ss_dssp HHHHHHHHHHHHHHHS-----HHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHccC---CChhHHHHHHHHHHHHccCH
Confidence 5677788888776544 35699999999999996554
No 75
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=79.63 E-value=11 Score=44.25 Aligned_cols=71 Identities=20% Similarity=0.077 Sum_probs=60.8
Q ss_pred hHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhc---CChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHH
Q 005697 246 FTANLVRSRVLPLYSVSVCLPYLVASANWILGELASC---LPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVG 322 (682)
Q Consensus 246 ~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~---l~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~ 322 (682)
.+.+++ .|++.... ++..-+|-|.|-++.+..++ .|...+..+...++..+.|.. .-||++|..||..
T Consensus 82 lV~~~f-~hlLRg~E--skdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Dre------p~VRiqAv~aLsr 152 (892)
T KOG2025|consen 82 LVAGTF-YHLLRGTE--SKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDRE------PNVRIQAVLALSR 152 (892)
T ss_pred HHHHHH-HHHHhccc--CcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccC------chHHHHHHHHHHH
Confidence 344444 47777777 78999999999999999984 588889999999999999988 8999999999999
Q ss_pred hhh
Q 005697 323 LLE 325 (682)
Q Consensus 323 ~l~ 325 (682)
|=.
T Consensus 153 lQ~ 155 (892)
T KOG2025|consen 153 LQG 155 (892)
T ss_pred Hhc
Confidence 874
No 76
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=78.85 E-value=60 Score=37.85 Aligned_cols=135 Identities=14% Similarity=-0.022 Sum_probs=82.3
Q ss_pred hHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhccCC
Q 005697 224 DYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLD 303 (682)
Q Consensus 224 ~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~d~~ 303 (682)
++-+.-.++|.+++.+.- -..+..++..+-.|+.. -+++.||+-+..+ +|-.....+..-.+.+.+-.+|.|.|
T Consensus 781 ~RvctsvaI~iVae~cgp--fsVlP~lm~dY~TPe~n--VQnGvLkam~fmF--eyig~~s~dYvy~itPlleDAltDrD 854 (975)
T COG5181 781 QRVCTSVAISIVAEYCGP--FSVLPTLMSDYETPEAN--VQNGVLKAMCFMF--EYIGQASLDYVYSITPLLEDALTDRD 854 (975)
T ss_pred hhhhhhhhhhhhHhhcCc--hhhHHHHHhcccCchhH--HHHhHHHHHHHHH--HHHHHHHHHHHHHhhHHHHhhhcccc
Confidence 344555567777766531 12245666666677776 5788888866532 23223445566667778888899988
Q ss_pred CCCCCCcchhHHHHHHHHHhhhcCCCCCChHHHHHHHHHhhcccc-hhhhHHHHHHHHHHHHhhhhhhc
Q 005697 304 KGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANENVAD 371 (682)
Q Consensus 304 ~~~~~~~pVrv~Aa~AL~~~l~~~~l~p~l~~llq~Ll~~L~~e~-~e~d~l~~~L~~iVe~~~e~i~P 371 (682)
++=|-.|+.-|..+.-+. -.---...+-.|++.|=.-+ +++..+.+.....+|.|..-+.|
T Consensus 855 ------~vhRqta~nvI~Hl~Lnc-~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~ 916 (975)
T COG5181 855 ------PVHRQTAMNVIRHLVLNC-PGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGS 916 (975)
T ss_pred ------hHHHHHHHHHHHHHhcCC-CCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhcc
Confidence 788888888888776652 22223345556666442222 34556666666667776666554
No 77
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=78.48 E-value=1.1e+02 Score=35.78 Aligned_cols=257 Identities=14% Similarity=0.108 Sum_probs=148.9
Q ss_pred HHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCC----hhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhh
Q 005697 249 NLVRSRVLPLYSVSVCLPYLVASANWILGELASCLP----EDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLL 324 (682)
Q Consensus 249 ~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~----~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l 324 (682)
+++...++-.|. ++.|-.|-||..++|.++..+. .+.+..+=..+...|....++ .++--+.|..+|.+..
T Consensus 603 ~~ivStiL~~L~--~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypE---vLgsil~Ai~~I~sv~ 677 (975)
T COG5181 603 SMIVSTILKLLR--SKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPE---VLGSILKAICSIYSVH 677 (975)
T ss_pred HHHHHHHHHHhc--CCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHH---HHHHHHHHHHHHhhhh
Confidence 445556677788 8999999999999999988643 455666656667777655433 2555566666676666
Q ss_pred hcCCCCCChHHHHHHHHHhhcccc-hhhhHHHHHHHHHHHHhhhhhhch-HHHHHHHHHHHHHHhcCCCCCCChhhHHhH
Q 005697 325 ENDYMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANENVADH-IPYIVSSLVAAISKHMHPSSEPWPQVVERG 402 (682)
Q Consensus 325 ~~~~l~p~l~~llq~Ll~~L~~e~-~e~d~l~~~L~~iVe~~~e~i~P~-a~~L~~~L~~~f~k~~~~~~~~~~~~~~~~ 402 (682)
....++|-+..++-.|..+|.|.. +--..-...+.+|..+..|.+.|- --.|+-.|+..+..+- -++...+
T Consensus 678 ~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~n-------KeiRR~A 750 (975)
T COG5181 678 RFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWN-------KEIRRNA 750 (975)
T ss_pred cccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhh-------HHHHHhh
Confidence 667888888888888888777753 111122455677777777776662 2457777777664431 1455667
Q ss_pred HHHHHHHHHhhhhhchhhhhhhccCCcc-chhHhHHHHHHHHHHHhhhhhcccccccccCCCcchHHhHHHHHHHHHhhc
Q 005697 403 FAALALMAQSWENFLREEVELDQSSGKW-ESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSV 481 (682)
Q Consensus 403 ~~aLa~~~~~~~~~~~~~~~~~~~~d~~-~~~~~a~L~ti~tllq~~~~~~~~e~~~s~~~~~~~~~~le~~l~~vi~~i 481 (682)
-+++|.++.+.++-+.=+.-++.- +. +..+=+|-..-..|+. -. |. .-.++|.++.--
T Consensus 751 ~~tfG~Is~aiGPqdvL~~LlnnL--kvqeRq~RvctsvaI~iVa-----------e~------cg--pfsVlP~lm~dY 809 (975)
T COG5181 751 TETFGCISRAIGPQDVLDILLNNL--KVQERQQRVCTSVAISIVA-----------EY------CG--PFSVLPTLMSDY 809 (975)
T ss_pred hhhhhhHHhhcCHHHHHHHHHhcc--hHHHHHhhhhhhhhhhhhH-----------hh------cC--chhhHHHHHhcc
Confidence 788888888877544211111110 01 1112223222233331 00 00 124456666665
Q ss_pred CchhHHHhhhHHHHHHHHHHHHhcccchhhhhhchHHHHHHHHHhhhccccccccccccCCCCCCCCCChhHHHHHHH
Q 005697 482 SERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIVRQMPPPPAPPVPPQSIIEGIG 559 (682)
Q Consensus 482 ~~~~~~l~~~~~~~l~e~~~li~~W~~~e~~~~~~~~dyl~evi~l~~~~~L~Nfi~~g~~~~~~~~~~~~~~~~~~~ 559 (682)
.+++.-.||++.--+.-+++-+ .+++.||+--|.| -|..-++- .++.|.+.-.+.+.
T Consensus 810 ~TPe~nVQnGvLkam~fmFeyi----------g~~s~dYvy~itP-----lleDAltD------rD~vhRqta~nvI~ 866 (975)
T COG5181 810 ETPEANVQNGVLKAMCFMFEYI----------GQASLDYVYSITP-----LLEDALTD------RDPVHRQTAMNVIR 866 (975)
T ss_pred cCchhHHHHhHHHHHHHHHHHH----------HHHHHHHHHHhhH-----HHHhhhcc------cchHHHHHHHHHHH
Confidence 6666666887654433332221 4566778888888 45543332 34445555444444
No 78
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=76.60 E-value=14 Score=33.31 Aligned_cols=74 Identities=9% Similarity=0.136 Sum_probs=54.3
Q ss_pred CcchhHHHHHHHHHhhhc--CCCCCChHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhhh-hhchHHHHHHHHHHH
Q 005697 309 CYPVRASAAGAIVGLLEN--DYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANEN-VADHIPYIVSSLVAA 383 (682)
Q Consensus 309 ~~pVrv~Aa~AL~~~l~~--~~l~p~l~~llq~Ll~~L~~e~~e~d~l~~~L~~iVe~~~e~-i~P~a~~L~~~L~~~ 383 (682)
+.+-|..|-+||+.+++. +++.+..|+++-.|-..+..+. =.+..+++-..+|.+.+++ +.|+..++...+...
T Consensus 28 ~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~~-l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~~~ 104 (107)
T PF08064_consen 28 PIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIPE-LREEALSCWNCFIKTLDEEDLGPLLDQIFAILLPL 104 (107)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHh
Confidence 489999999999999995 5788888888877777665542 2344588888888888875 777666665555443
No 79
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=75.82 E-value=74 Score=33.27 Aligned_cols=109 Identities=13% Similarity=-0.055 Sum_probs=72.0
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhH-HHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcC-ChhhHHHHHHHHHHh
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFT-ANLVRSRVLPLYSVSVCLPYLVASANWILGELASCL-PEDISADVYSSLLKA 298 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~l-e~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l-~~~~l~~il~~ll~~ 298 (682)
++..++-|+.++|..+.+-.. ++.+ +---...|...+. +|+|-+|-+|++++..++..- +......++..+++.
T Consensus 26 dp~i~e~al~al~n~aaf~~n--q~~Ir~~Ggi~lI~~lL~--~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~ 101 (254)
T PF04826_consen 26 DPFIQEKALIALGNSAAFPFN--QDIIRDLGGISLIGSLLN--DPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEE 101 (254)
T ss_pred ChHHHHHHHHHHHhhccChhH--HHHHHHcCCHHHHHHHcC--CCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHH
Confidence 577899999999997765332 1111 1111123334456 789999999999999998764 455667777777776
Q ss_pred hccCCCCCCCCcchhHHHHHHHHHhhhcC----CCCCChHHHH
Q 005697 299 LQMLDKGDTSCYPVRASAAGAIVGLLEND----YMPPEWYPLL 337 (682)
Q Consensus 299 L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~----~l~p~l~~ll 337 (682)
.....- .-+|+..+.++|.++--.+ .+.++++.++
T Consensus 102 ~~s~~l----ns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll 140 (254)
T PF04826_consen 102 TVSSPL----NSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLL 140 (254)
T ss_pred HhcCCC----CCHHHHHHHHHHHccCCCcchhhhHHhhHHHHH
Confidence 655321 2689999999999984433 4455555554
No 80
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=75.79 E-value=92 Score=33.08 Aligned_cols=156 Identities=13% Similarity=-0.022 Sum_probs=98.8
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhh----c-CCh-------hhH
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELAS----C-LPE-------DIS 288 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~----~-l~~-------~~l 288 (682)
+...++-++..+|..+-.=.+ ...+++..+ .-.++ ..++-+|..|+.++.-+.- . ++. ...
T Consensus 40 ~~~vR~~al~cLGl~~Lld~~----~a~~~l~l~-~~~~~--~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~ 112 (298)
T PF12719_consen 40 DPAVRELALKCLGLCCLLDKE----LAKEHLPLF-LQALQ--KDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDS 112 (298)
T ss_pred CHHHHHHHHHHHHHHHHhChH----HHHHHHHHH-HHHHH--hCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchH
Confidence 457789999999986644222 222222211 11234 3477888888877755433 2 222 234
Q ss_pred HHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhcCCCCCChHHHHHHHHHhhcccc-hhhhHHHHHHHHHHHHhhh
Q 005697 289 ADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANE 367 (682)
Q Consensus 289 ~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~~l~p~l~~llq~Ll~~L~~e~-~e~d~l~~~L~~iVe~~~e 367 (682)
..++..+.+.|.+.+ .-||..|+.++..++-++.+.+ .+.++..|+-.--+.. .++..+-++|..+...|..
T Consensus 113 ~~l~~~l~~~l~~~~------~~~~~~a~EGl~KLlL~~~i~~-~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~ 185 (298)
T PF12719_consen 113 KSLLKILTKFLDSEN------PELQAIAVEGLCKLLLSGRISD-PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYAS 185 (298)
T ss_pred hHHHHHHHHHHhcCC------HHHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHc
Confidence 677777788887766 5699999999999999887766 5566666665333433 4678999999999988886
Q ss_pred hhhchHHHHHHHHHHHHHHhcCC
Q 005697 368 NVADHIPYIVSSLVAAISKHMHP 390 (682)
Q Consensus 368 ~i~P~a~~L~~~L~~~f~k~~~~ 390 (682)
.=..+-..+......++...++.
T Consensus 186 s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 186 SSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhC
Confidence 43334444555555555554433
No 81
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=75.78 E-value=1.4e+02 Score=33.37 Aligned_cols=151 Identities=17% Similarity=0.156 Sum_probs=92.5
Q ss_pred hhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhc--C-ChhhHHHHHHHHHHh
Q 005697 222 QKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASC--L-PEDISADVYSSLLKA 298 (682)
Q Consensus 222 ~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~--l-~~~~l~~il~~ll~~ 298 (682)
...+-+++.+++++..+..+ .+.++.++.... ..+.. ...+-.|.++..++.=..+. + ......++++.++..
T Consensus 204 ~~~~~~~~~~la~LvNK~~~--~~~l~~~l~~~~-~~~~~-~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~l 279 (415)
T PF12460_consen 204 EFSRLAALQLLASLVNKWPD--DDDLDEFLDSLL-QSISS-SEDSELRPQALEILIWITKALVMRGHPLATELLDKLLEL 279 (415)
T ss_pred hHHHHHHHHHHHHHHcCCCC--hhhHHHHHHHHH-hhhcc-cCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 66788999999998887542 223445544332 22221 45566777777766666664 2 334567788888888
Q ss_pred hccCCCCCCCCcchhHHHHHHHHHhhhc-C---------CCCCChH-----HHHHHHHHhhcccc-hhhhHHHHHHHHHH
Q 005697 299 LQMLDKGDTSCYPVRASAAGAIVGLLEN-D---------YMPPEWY-----PLLQVIVGRIGYED-EENSILFELLSSVV 362 (682)
Q Consensus 299 L~d~~~~~~~~~pVrv~Aa~AL~~~l~~-~---------~l~p~l~-----~llq~Ll~~L~~e~-~e~d~l~~~L~~iV 362 (682)
|.+++ +...||.++.-++.. + .+++-.. .++..+++...+.. ........++..++
T Consensus 280 L~~~~--------~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll 351 (415)
T PF12460_consen 280 LSSPE--------LGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLL 351 (415)
T ss_pred hCChh--------hHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHH
Confidence 87754 679999999999876 2 2333211 12222222222211 01234566888888
Q ss_pred HHhhhh-hhchHHHHHHHHHHHH
Q 005697 363 GAANEN-VADHIPYIVSSLVAAI 384 (682)
Q Consensus 363 e~~~e~-i~P~a~~L~~~L~~~f 384 (682)
.+...+ +.|+.++|.+-|.+.+
T Consensus 352 ~~vP~~vl~~~l~~LlPLLlqsL 374 (415)
T PF12460_consen 352 KNVPKSVLLPELPTLLPLLLQSL 374 (415)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHh
Confidence 888877 4668888888877776
No 82
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=75.54 E-value=12 Score=39.22 Aligned_cols=80 Identities=24% Similarity=0.165 Sum_probs=60.4
Q ss_pred hhcccCCCCCcccHHHHHHHHHHhhhc-CChhhHHH--HHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhc----CC
Q 005697 256 LPLYSVSVCLPYLVASANWILGELASC-LPEDISAD--VYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN----DY 328 (682)
Q Consensus 256 lP~l~~~s~~p~LrarA~~~l~~f~~~-l~~~~l~~--il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~----~~ 328 (682)
+-.|.. +..|+.+.+|+..+|..+.. ++.+...+ .+..+.+.|.+++ .-||..|..||.++-.+ ..
T Consensus 18 l~lL~~-t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~------~~vr~~AL~aL~Nls~~~en~~~ 90 (254)
T PF04826_consen 18 LCLLES-TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPN------PSVREKALNALNNLSVNDENQEQ 90 (254)
T ss_pred HHHHhc-CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCC------hHHHHHHHHHHHhcCCChhhHHH
Confidence 334553 67899999999999997664 44544433 5677888888888 78999999999998665 25
Q ss_pred CCCChHHHHHHHHH
Q 005697 329 MPPEWYPLLQVIVG 342 (682)
Q Consensus 329 l~p~l~~llq~Ll~ 342 (682)
++-|+..+++.++.
T Consensus 91 Ik~~i~~Vc~~~~s 104 (254)
T PF04826_consen 91 IKMYIPQVCEETVS 104 (254)
T ss_pred HHHHHHHHHHHHhc
Confidence 66777888777765
No 83
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=75.20 E-value=12 Score=43.06 Aligned_cols=72 Identities=17% Similarity=0.056 Sum_probs=59.6
Q ss_pred hHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcC---ChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHH
Q 005697 246 FTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCL---PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVG 322 (682)
Q Consensus 246 ~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l---~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~ 322 (682)
.+.+++. ||+..+. ++..-+|.|+|.++....++. ++....-++..+.+.+-|.+ ..||.+|..+|..
T Consensus 88 ~V~~~~~-h~lRg~e--skdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE------~~VR~eAv~~L~~ 158 (885)
T COG5218 88 LVAGTFY-HLLRGTE--SKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDRE------KAVRREAVKVLCY 158 (885)
T ss_pred HHHHHHH-HHHhccc--CcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcch------HHHHHHHHHHHHH
Confidence 4556665 7777777 889999999999999999984 56667777888888888887 8999999999998
Q ss_pred hhhc
Q 005697 323 LLEN 326 (682)
Q Consensus 323 ~l~~ 326 (682)
|-+.
T Consensus 159 ~Qe~ 162 (885)
T COG5218 159 YQEM 162 (885)
T ss_pred HHhc
Confidence 8654
No 84
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.59 E-value=9.5 Score=43.56 Aligned_cols=97 Identities=20% Similarity=0.206 Sum_probs=68.4
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhH-HHHHHHhhhhcccCCCCCc-ccHHHHHHHHHHhhhcC---C-hhhHHHHHHH
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFT-ANLVRSRVLPLYSVSVCLP-YLVASANWILGELASCL---P-EDISADVYSS 294 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~l-e~fL~~~VlP~l~~~s~~p-~LrarA~~~l~~f~~~l---~-~~~l~~il~~ 294 (682)
+...+|=|..++|.++..-.. .++++ ..-....++..++ .+.+ -+...+.|+++.++..- | -+.+..+++.
T Consensus 165 ~~~v~eQavWALgNIagds~~-~Rd~vl~~g~l~pLl~~l~--~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~ 241 (514)
T KOG0166|consen 165 SADVREQAVWALGNIAGDSPD-CRDYVLSCGALDPLLRLLN--KSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPA 241 (514)
T ss_pred cHHHHHHHHHHHhccccCChH-HHHHHHhhcchHHHHHHhc--cccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence 345588889999998865432 23332 2222233334444 3444 45567899999999863 2 2689999999
Q ss_pred HHHhhccCCCCCCCCcchhHHHHHHHHHhhhc
Q 005697 295 LLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 326 (682)
Q Consensus 295 ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~ 326 (682)
+..++...| .=|.+.||-||..+.++
T Consensus 242 L~~ll~~~D------~~Vl~Da~WAlsyLsdg 267 (514)
T KOG0166|consen 242 LLRLLHSTD------EEVLTDACWALSYLTDG 267 (514)
T ss_pred HHHHHhcCC------HHHHHHHHHHHHHHhcC
Confidence 999999988 66889999999999875
No 85
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=74.37 E-value=14 Score=32.44 Aligned_cols=64 Identities=20% Similarity=0.131 Sum_probs=54.2
Q ss_pred hhhhcccCCCCCcccHHHHHHHHHHhhhc-C-ChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhh
Q 005697 254 RVLPLYSVSVCLPYLVASANWILGELASC-L-PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLE 325 (682)
Q Consensus 254 ~VlP~l~~~s~~p~LrarA~~~l~~f~~~-l-~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~ 325 (682)
.++-+++ +|.|-+|+.|...++++-.. - +......++...+..|.|+| .=|...|..+|..+++
T Consensus 7 ~al~~L~--dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~D------syVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 7 EALSDLN--DPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDED------SYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHcc--CCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCC------chHHHHHHHHHHHHHH
Confidence 4556677 78899999999999999775 3 66778899999999999998 5688999999988877
No 86
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=74.31 E-value=18 Score=32.59 Aligned_cols=87 Identities=9% Similarity=0.109 Sum_probs=55.4
Q ss_pred HHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhc--CCCCCChHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhh
Q 005697 289 ADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN--DYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAAN 366 (682)
Q Consensus 289 ~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~--~~l~p~l~~llq~Ll~~L~~e~~e~d~l~~~L~~iVe~~~ 366 (682)
.-+++.+-+.+.|.+.. .++.-|..|-+||+.+++. +++.+..|+++-.|-..|..+. =.+.-+++-..+|...+
T Consensus 10 LGil~~f~~~l~d~~g~--~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~e-L~~~al~~W~~~i~~L~ 86 (107)
T smart00802 10 LGILAVFSNILHDSSGK--KPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIPE-LRSLALRCWHVLIKTLK 86 (107)
T ss_pred HHHHHHHHHHHcCcccC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh-HHHHHHHHHHHHHHhCC
Confidence 33444444555555411 1244499999999999985 5777788888888888776552 13334777888887777
Q ss_pred hh-hhchHHHHHH
Q 005697 367 EN-VADHIPYIVS 378 (682)
Q Consensus 367 e~-i~P~a~~L~~ 378 (682)
++ +.|...++..
T Consensus 87 ~~~l~~ll~~~~~ 99 (107)
T smart00802 87 EEELGPLLDQIFA 99 (107)
T ss_pred HHHHHHHHHHHHH
Confidence 64 5554444433
No 87
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=73.72 E-value=85 Score=37.98 Aligned_cols=131 Identities=17% Similarity=0.102 Sum_probs=84.8
Q ss_pred ccchhHHHHHHHHHHhhcCCCCCCCCCCCcccccccccccccccccccchhhHHHHHHHHhcCCCCCCCCCccccchhhH
Q 005697 146 LFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDY 225 (682)
Q Consensus 146 ~~S~R~aA~~lL~~L~~~~~~~~~~~~~~~~~~~kr~k~~~~k~~~~~~~l~~ili~~~L~~~~~~~~~~~~~~~~~~~k 225 (682)
.|+.|.+|...+..++..+|.. + .... .+..+|.... ..+|+.+
T Consensus 531 v~~Ir~~aa~~l~~l~~~~G~~----------w----------------~~~~-~i~k~L~~~~---------q~~y~~R 574 (759)
T KOG0211|consen 531 VYSIREAAARNLPALVETFGSE----------W----------------ARLE-EIPKLLAMDL---------QDNYLVR 574 (759)
T ss_pred HHHHHHHHHHHhHHHHHHhCcc----------h----------------hHHH-hhHHHHHHhc---------Ccccchh
Confidence 6789999999999975544411 1 1111 1333443211 1268999
Q ss_pred HHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccC--CCCCcccHHHHHHHHHHhhhcCChhhH-HHHHHHHHHhhccC
Q 005697 226 FGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSV--SVCLPYLVASANWILGELASCLPEDIS-ADVYSSLLKALQML 302 (682)
Q Consensus 226 egaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~--~s~~p~LrarA~~~l~~f~~~l~~~~l-~~il~~ll~~L~d~ 302 (682)
-+.++.+..++..+.+ + +...+++|-+.. .++.|-+|-+++..+.++-..+..... ..+++.......|+
T Consensus 575 ~t~l~si~~la~v~g~---e----i~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~ 647 (759)
T KOG0211|consen 575 MTTLFSIHELAEVLGQ---E----ITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQ 647 (759)
T ss_pred hHHHHHHHHHHHHhcc---H----HHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCc
Confidence 9999999999988753 2 222233332221 178899999999999999998654333 44555555555577
Q ss_pred CCCCCCCcchhHHHHHHHHHhhh
Q 005697 303 DKGDTSCYPVRASAAGAIVGLLE 325 (682)
Q Consensus 303 ~~~~~~~~pVrv~Aa~AL~~~l~ 325 (682)
+ .=||..|-.|.+....
T Consensus 648 ~------~dvr~~a~~a~~~i~l 664 (759)
T KOG0211|consen 648 E------LDVRYRAILAFGSIEL 664 (759)
T ss_pred c------cchhHHHHHHHHHHHH
Confidence 6 7899999999886544
No 88
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.55 E-value=2.5e+02 Score=35.32 Aligned_cols=66 Identities=29% Similarity=0.324 Sum_probs=56.3
Q ss_pred hhhhcccCCCCCcccHHHHHHHHHHhhhc-----CChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhc
Q 005697 254 RVLPLYSVSVCLPYLVASANWILGELASC-----LPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 326 (682)
Q Consensus 254 ~VlP~l~~~s~~p~LrarA~~~l~~f~~~-----l~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~ 326 (682)
-|.|++.+ +..+-+|.||..++...... +..+.+..+++.+...+++.. -|+|..+..+|..+++-
T Consensus 657 ~v~~~~e~-~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~------~~~~~~rl~~L~~L~~~ 727 (1176)
T KOG1248|consen 657 TVDPEFEN-SSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSS------SPAQASRLKCLKRLLKL 727 (1176)
T ss_pred HhhHHhhc-cccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccc------hHHHHHHHHHHHHHHHh
Confidence 57888875 55889999999999998774 457788999999999999876 89999999999999873
No 89
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=73.39 E-value=47 Score=44.33 Aligned_cols=96 Identities=18% Similarity=0.052 Sum_probs=62.5
Q ss_pred hhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChh---hH--HHHHHHHH
Q 005697 222 QKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPED---IS--ADVYSSLL 296 (682)
Q Consensus 222 ~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~---~l--~~il~~ll 296 (682)
...++.|..+++.++..-.++....++.=....+...|. ++.+-+|..|+|+++..+.. +++ .+ ..+++.++
T Consensus 460 ~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~--s~~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV 536 (2102)
T PLN03200 460 EQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLE--TGSQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALL 536 (2102)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHH
Confidence 345677788888877532221111111111122334456 68889999999999999863 221 12 13577788
Q ss_pred HhhccCCCCCCCCcchhHHHHHHHHHhhhc
Q 005697 297 KALQMLDKGDTSCYPVRASAAGAIVGLLEN 326 (682)
Q Consensus 297 ~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~ 326 (682)
+.|.+.+ .-+|..|+.||.+++.+
T Consensus 537 ~LL~sgd------~~~q~~Aa~AL~nLi~~ 560 (2102)
T PLN03200 537 WLLKNGG------PKGQEIAAKTLTKLVRT 560 (2102)
T ss_pred HHHhCCC------HHHHHHHHHHHHHHHhc
Confidence 8888776 78899999999999875
No 90
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=72.28 E-value=63 Score=36.51 Aligned_cols=154 Identities=14% Similarity=0.053 Sum_probs=85.8
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhc
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQ 300 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~ 300 (682)
+...|.-||+.++-+...-..+-.++.|--... |+-.-.+ +.....|..+-.++-..+++.|...+..+-+.++.
T Consensus 343 ~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K-~Leaa~d-s~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt--- 417 (516)
T KOG2956|consen 343 DEIIKKLALRVLREMLTNQPARLFDSTEIAICK-VLEAAKD-SQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT--- 417 (516)
T ss_pred hhHHHHHHHHHHHHHHHhchHhhhchHHHHHHH-HHHHHhC-CchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc---
Confidence 334466666666543322111112333333332 2232232 45567777777777777777777666665555544
Q ss_pred cCCCCCCCCcchhHHHHHHHHHhhhc---CCCCCChHHHHHHHHHhhcccc-hhhhHHHHHHHHHHHHhh-hhhhchHHH
Q 005697 301 MLDKGDTSCYPVRASAAGAIVGLLEN---DYMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAAN-ENVADHIPY 375 (682)
Q Consensus 301 d~~~~~~~~~pVrv~Aa~AL~~~l~~---~~l~p~l~~llq~Ll~~L~~e~-~e~d~l~~~L~~iVe~~~-e~i~P~a~~ 375 (682)
.| .|.-+.+..-+..+++. +.+-+.++.++-.+++.-.+.. .--...+.+|=.+|.+.+ +++.||...
T Consensus 418 -~D------~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~ 490 (516)
T KOG2956|consen 418 -AD------EPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQ 490 (516)
T ss_pred -Cc------chHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhh
Confidence 33 56666666677777774 3343444444444444333332 112336778888888888 889999988
Q ss_pred HHHH---HHHHHHH
Q 005697 376 IVSS---LVAAISK 386 (682)
Q Consensus 376 L~~~---L~~~f~k 386 (682)
|... |++.+.+
T Consensus 491 Lt~sk~~LlqlYin 504 (516)
T KOG2956|consen 491 LTSSKLNLLQLYIN 504 (516)
T ss_pred ccHHHHHHHHHHHH
Confidence 8765 4444433
No 91
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=72.20 E-value=31 Score=34.26 Aligned_cols=100 Identities=21% Similarity=0.245 Sum_probs=54.3
Q ss_pred hhccCCCCCCCCcchhHHHHHHHHHhhhcC---------------CCCCC-------hHHHHHHHHHhhcccc--hhhhH
Q 005697 298 ALQMLDKGDTSCYPVRASAAGAIVGLLEND---------------YMPPE-------WYPLLQVIVGRIGYED--EENSI 353 (682)
Q Consensus 298 ~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~---------------~l~p~-------l~~llq~Ll~~L~~e~--~e~d~ 353 (682)
.+.|++ .-||..|+.+|..+++.. .+.|+ +..+=..|+..|..|. .-...
T Consensus 48 il~Dp~------~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q 121 (182)
T PF13251_consen 48 ILKDPS------PKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQ 121 (182)
T ss_pred HHcCCc------hhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHH
Confidence 345676 899999999999999861 12222 4444455666566664 12333
Q ss_pred HHHHHHHHHHHhhhhhhchH---HHHHHHHHHHHHHhcCCCCCCChhhHHhHHHHHHHHHH
Q 005697 354 LFELLSSVVGAANENVADHI---PYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQ 411 (682)
Q Consensus 354 l~~~L~~iVe~~~e~i~P~a---~~L~~~L~~~f~k~~~~~~~~~~~~~~~~~~aLa~~~~ 411 (682)
+.+++..+|++ +||. .++...++.....++... | +.+....+.+++++..
T Consensus 122 ~lK~la~Lv~~-----tPY~rL~~~ll~~~v~~v~~~l~~~-d--~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 122 LLKCLAVLVQA-----TPYHRLPPGLLTEVVTQVRPLLRHR-D--PNVRVAALSCLGALLS 174 (182)
T ss_pred HHHHHHHHHcc-----CChhhcCHhHHHHHHHHHHHHHhcC-C--CcHHHHHHHHHHHHHc
Confidence 45555555654 4443 455555555554444332 2 1344444444444443
No 92
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=72.16 E-value=1e+02 Score=41.35 Aligned_cols=134 Identities=13% Similarity=0.123 Sum_probs=78.4
Q ss_pred CCCcccHHHHHHHHHHhhhcCCh----hhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhc---C----CCCC
Q 005697 263 VCLPYLVASANWILGELASCLPE----DISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN---D----YMPP 331 (682)
Q Consensus 263 s~~p~LrarA~~~l~~f~~~l~~----~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~---~----~l~p 331 (682)
++++-.|..|+|+++.+...-+. -.....++-++..|...+ ..||.+||.||.++... + .+.-
T Consensus 620 sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~------~~v~keAA~AL~nL~~~~~~~q~~~~v~~ 693 (2102)
T PLN03200 620 SSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNT------EAVATQSARALAALSRSIKENRKVSYAAE 693 (2102)
T ss_pred CCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC------hHHHHHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 67889999999999999874211 123456777888888776 78999999999999863 1 2222
Q ss_pred -ChHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHhcCCCCCCChhhHHhHHHHHHHHH
Q 005697 332 -EWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMA 410 (682)
Q Consensus 332 -~l~~llq~Ll~~L~~e~~e~d~l~~~L~~iVe~~~e~i~P~a~~L~~~L~~~f~k~~~~~~~~~~~~~~~~~~aLa~~~ 410 (682)
-++|++ .+++ -.+.. -.+....+|..++...+....--....+.. +.+++.+.. +...+.+-.+|..+.
T Consensus 694 GaV~pL~-~LL~-~~d~~-v~e~Al~ALanLl~~~e~~~ei~~~~~I~~----Lv~lLr~G~---~~~k~~Aa~AL~~L~ 763 (2102)
T PLN03200 694 DAIKPLI-KLAK-SSSIE-VAEQAVCALANLLSDPEVAAEALAEDIILP----LTRVLREGT---LEGKRNAARALAQLL 763 (2102)
T ss_pred CCHHHHH-HHHh-CCChH-HHHHHHHHHHHHHcCchHHHHHHhcCcHHH----HHHHHHhCC---hHHHHHHHHHHHHHH
Confidence 344433 3333 12211 244556666666655432211111122333 334444443 246677767776666
Q ss_pred Hh
Q 005697 411 QS 412 (682)
Q Consensus 411 ~~ 412 (682)
..
T Consensus 764 ~~ 765 (2102)
T PLN03200 764 KH 765 (2102)
T ss_pred hC
Confidence 54
No 93
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=71.99 E-value=1.3e+02 Score=31.37 Aligned_cols=169 Identities=10% Similarity=0.085 Sum_probs=85.9
Q ss_pred HHHHHhcCCCCCCCCCccccchhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccC---CCCCcccHHHHHHHHH
Q 005697 201 VLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSV---SVCLPYLVASANWILG 277 (682)
Q Consensus 201 i~~~L~~~~~~~~~~~~~~~~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~---~s~~p~LrarA~~~l~ 277 (682)
++++++-|.....++. +........-||.++-+++..=.. ++.++..-+-.++.|.+.. +.++-+||-.++=++|
T Consensus 73 LqEivaiYp~l~p~~l-~~~qsnRVcnaL~LlQcvASHpdT-r~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIg 150 (293)
T KOG3036|consen 73 LQEIVAIYPSLSPPTL-TPAQSNRVCNALALLQCVASHPDT-RRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIG 150 (293)
T ss_pred HHHHHhcccccCCCCC-CccccchHHHHHHHHHHHhcCcch-HHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHH
Confidence 6777777776554433 223344566777777777765221 2233333333345666654 2577799999998888
Q ss_pred HhhhcCChhh-----HHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhcCCCCCChHHHHHHHHHhhcccchhhh
Q 005697 278 ELASCLPEDI-----SADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENS 352 (682)
Q Consensus 278 ~f~~~l~~~~-----l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~~l~p~l~~llq~Ll~~L~~e~~e~d 352 (682)
...+.=+++. -.++++..++-+.... ---+.-|+.-++.++-+|.=--|+=+..+ -..
T Consensus 151 aLvk~dd~eVi~fLl~TeIVPlCLrime~GS------elSKtvA~fIlqKIlldD~GL~YiCqt~e-----------RF~ 213 (293)
T KOG3036|consen 151 ALVKNDDQEVIRFLLTTEIVPLCLRIMESGS------ELSKTVATFILQKILLDDVGLYYICQTAE-----------RFS 213 (293)
T ss_pred HHHhcCcHHHHHHHHHhhhHHHHHHHHhccc------HHHHHHHHHHHHHHhhccccHHHHHHhHH-----------HHH
Confidence 8876434432 2344555555554432 12233343333333332211111111111 111
Q ss_pred HHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHhcCCC
Q 005697 353 ILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPS 391 (682)
Q Consensus 353 ~l~~~L~~iVe~~~e~i~P~a~~L~~~L~~~f~k~~~~~ 391 (682)
.+..++..+|....+. -.+.+..+.++.++|+..++
T Consensus 214 av~~~L~kmv~~l~~~---ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 214 AVALVLGKMVFQLVSM---PSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred HHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHhcCCH
Confidence 2233333333333221 33578899999999986443
No 94
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=71.91 E-value=77 Score=34.53 Aligned_cols=99 Identities=23% Similarity=0.147 Sum_probs=68.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHhhhcchhH-HHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCC--hhhH--HHHHH
Q 005697 219 SRIQKDYFGVLMAYGGLQEFLREQKSEFT-ANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLP--EDIS--ADVYS 293 (682)
Q Consensus 219 ~~~~~~kegaL~~lg~la~~l~~~~~~~l-e~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~--~~~l--~~il~ 293 (682)
+.....|++||--+--+.+.+.. ..+.. -.++.. ++-.+. +..+-||++|.|++|.-..--| .+.+ ...++
T Consensus 94 s~~le~ke~ald~Le~lve~iDn-Andl~~~ggl~~-ll~~l~--~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~ 169 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDN-ANDLISLGGLVP-LLGYLE--NSDAELRELAARVIGTAVQNNPKSQEQVIELGALS 169 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhh-HHhHhhccCHHH-HHHHhc--CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHH
Confidence 34678899999888887777643 12222 123332 233677 7889999999999999876422 1211 22567
Q ss_pred HHHHhhccCCCCCCCCcchhHHHHHHHHHhhhc
Q 005697 294 SLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 326 (682)
Q Consensus 294 ~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~ 326 (682)
.++..|..++ +.-||+.|-.|+..+++|
T Consensus 170 ~Ll~~ls~~~-----~~~~r~kaL~AissLIRn 197 (342)
T KOG2160|consen 170 KLLKILSSDD-----PNTVRTKALFAISSLIRN 197 (342)
T ss_pred HHHHHHccCC-----CchHHHHHHHHHHHHHhc
Confidence 7777777444 589999999999999997
No 95
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=71.74 E-value=45 Score=41.71 Aligned_cols=73 Identities=22% Similarity=0.208 Sum_probs=59.9
Q ss_pred CCcccHHHHHHHHHHhhhcC-ChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhc---------CCCCCCh
Q 005697 264 CLPYLVASANWILGELASCL-PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN---------DYMPPEW 333 (682)
Q Consensus 264 ~~p~LrarA~~~l~~f~~~l-~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~---------~~l~p~l 333 (682)
..+-.|-.|+.++..++... ++..+..+++=++.++.|+. .-||+.|..+|..++.. ..++-||
T Consensus 435 k~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~------a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYl 508 (1431)
T KOG1240|consen 435 KTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSE------ADVRATALETLTELLALVRDIPPSDANIFPEYL 508 (1431)
T ss_pred hcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCch------HHHHHHHHHHHHHHHhhccCCCcccchhhHhhh
Confidence 45677889999999999975 67789999999999999998 78999999999998874 1455566
Q ss_pred HHHHHHHHH
Q 005697 334 YPLLQVIVG 342 (682)
Q Consensus 334 ~~llq~Ll~ 342 (682)
-|-++.|+.
T Consensus 509 fP~L~~l~~ 517 (1431)
T KOG1240|consen 509 FPHLNHLLN 517 (1431)
T ss_pred hhhhHhhhc
Confidence 666666655
No 96
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=71.20 E-value=1e+02 Score=35.77 Aligned_cols=90 Identities=14% Similarity=-0.024 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcC-ChhhHHHHHHHHHHhhccCC
Q 005697 225 YFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCL-PEDISADVYSSLLKALQMLD 303 (682)
Q Consensus 225 kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l-~~~~l~~il~~ll~~L~d~~ 303 (682)
.+-+++++|-|..-..+.+.+ .-+..||...+- -.+.++|+.|..++++|+-.. ++-.-+.+-..+-+|+.|.|
T Consensus 465 ~~I~vrIL~iLG~EgP~a~~P---~~yvrhIyNR~i--LEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~D 539 (898)
T COG5240 465 HQITVRILGILGREGPRAKTP---GKYVRHIYNRLI--LENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQD 539 (898)
T ss_pred hHHHHHHHHHhcccCCCCCCc---chHHHHHHHHHH--HhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhccc
Confidence 344556666666554432211 222334444444 356789999999999998753 45455567777789999988
Q ss_pred CCCCCCcchhHHHHHHHHHhhh
Q 005697 304 KGDTSCYPVRASAAGAIVGLLE 325 (682)
Q Consensus 304 ~~~~~~~pVrv~Aa~AL~~~l~ 325 (682)
=-||-.|+.+++.+=.
T Consensus 540 ------deVRdrAsf~l~~~~~ 555 (898)
T COG5240 540 ------DEVRDRASFLLRNMRL 555 (898)
T ss_pred ------HHHHHHHHHHHHhhhh
Confidence 4699999999997643
No 97
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=71.16 E-value=1.9e+02 Score=32.79 Aligned_cols=153 Identities=14% Similarity=0.206 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhc--CCCCCChHHHHHHHHHhhc----ccc--hhhhHHHHHH
Q 005697 287 ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN--DYMPPEWYPLLQVIVGRIG----YED--EENSILFELL 358 (682)
Q Consensus 287 ~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~--~~l~p~l~~llq~Ll~~L~----~e~--~e~d~l~~~L 358 (682)
...++++.+.+.+..+.. .=--+--+|+-+.+.. +.+.|+...+++.|...+. |.. .=+.++++++
T Consensus 23 ~~~~ll~~Lf~~i~~~~s------~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi 96 (435)
T PF03378_consen 23 FAQQLLQNLFALIEKPGS------AENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESI 96 (435)
T ss_dssp CHHHHHHHHHHHHHTT-S------TC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCC------ccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHH
Confidence 346666666666654320 0013344455544442 5778888888888888552 332 1378899999
Q ss_pred HHHHHHhhhhhhchHHHHHHHHHHHHHHhcCCCCCCChhhHHhHHHHHHHHHHhhh-hhchhhhh-h---hccCCccchh
Q 005697 359 SSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWE-NFLREEVE-L---DQSSGKWESG 433 (682)
Q Consensus 359 ~~iVe~~~e~i~P~a~~L~~~L~~~f~k~~~~~~~~~~~~~~~~~~aLa~~~~~~~-~~~~~~~~-~---~~~~d~~~~~ 433 (682)
..+|....+.=......+-+.|...|..++.+... ++..+.|.-|+.+--... +.-|+.-. . .-.+.-|+..
T Consensus 97 ~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~---EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~ 173 (435)
T PF03378_consen 97 GALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQ---EFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERR 173 (435)
T ss_dssp HHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-T---TTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGST
T ss_pred HHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccC
Confidence 99987644321112334555555566665555543 589999999998888654 12222211 0 1133446444
Q ss_pred HhH--HHHHHHHHHHhh
Q 005697 434 QAA--IAKAFSALLQQA 448 (682)
Q Consensus 434 ~~a--~L~ti~tllq~~ 448 (682)
..+ +.+-+...++++
T Consensus 174 gniPalvrLL~a~i~k~ 190 (435)
T PF03378_consen 174 GNIPALVRLLQAYIKKD 190 (435)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHhC
Confidence 333 666666666543
No 98
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=68.62 E-value=92 Score=32.91 Aligned_cols=134 Identities=15% Similarity=0.172 Sum_probs=79.5
Q ss_pred chhHHHHHHHhhhhcccC-CCCCcccHHHHHHHHHHhhhcCChhh---------HHHHHHHHHHhhc--------cCCCC
Q 005697 244 SEFTANLVRSRVLPLYSV-SVCLPYLVASANWILGELASCLPEDI---------SADVYSSLLKALQ--------MLDKG 305 (682)
Q Consensus 244 ~~~le~fL~~~VlP~l~~-~s~~p~LrarA~~~l~~f~~~l~~~~---------l~~il~~ll~~L~--------d~~~~ 305 (682)
.+.++..+--.+-|-|.. ++..+-.|.++|.++..|-+..+... ..-+.+++.+++. ++.
T Consensus 110 ~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s-- 187 (282)
T PF10521_consen 110 RPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDES-- 187 (282)
T ss_pred cchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhh--
Confidence 344555544333333332 36789999999999999988654333 4555666777776 222
Q ss_pred CCCCcchhHHHHHHHHHhhhc---C---CCCCChHHHH-HHHHHhhcccch-----hhhHHHHHHHHHHHHhhhhhhchH
Q 005697 306 DTSCYPVRASAAGAIVGLLEN---D---YMPPEWYPLL-QVIVGRIGYEDE-----ENSILFELLSSVVGAANENVADHI 373 (682)
Q Consensus 306 ~~~~~pVrv~Aa~AL~~~l~~---~---~l~p~l~~ll-q~Ll~~L~~e~~-----e~d~l~~~L~~iVe~~~e~i~P~a 373 (682)
+.+=..|--||..++.. + .-...+-.++ +.+++.+.-+.+ =...+++.+..++...+.....|.
T Consensus 188 ----~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL 263 (282)
T PF10521_consen 188 ----LELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHL 263 (282)
T ss_pred ----HHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHH
Confidence 66666777777777553 1 1122233333 335553322220 123456677777787777777777
Q ss_pred HHHHHHHHHH
Q 005697 374 PYIVSSLVAA 383 (682)
Q Consensus 374 ~~L~~~L~~~ 383 (682)
..|...|.+.
T Consensus 264 ~rii~~l~~~ 273 (282)
T PF10521_consen 264 QRIIPVLSQI 273 (282)
T ss_pred HHHHHHHHHH
Confidence 7777776663
No 99
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=68.44 E-value=1.8e+02 Score=36.60 Aligned_cols=117 Identities=14% Similarity=0.049 Sum_probs=81.2
Q ss_pred cchhhHHHHHHHHHHHHHHHhhh-----cchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhc--CChhhHHHHH
Q 005697 220 RIQKDYFGVLMAYGGLQEFLREQ-----KSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASC--LPEDISADVY 292 (682)
Q Consensus 220 ~~~~~kegaL~~lg~la~~l~~~-----~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~--l~~~~l~~il 292 (682)
++...+-+.+-++|.+....... ....+..-+..++..-+. +-++|.|.++..+..+.... .+.....++.
T Consensus 324 es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~--Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~ 401 (1251)
T KOG0414|consen 324 ESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLL--DVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVL 401 (1251)
T ss_pred chHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhh--cccHHHHHHHHHHHHHHHHccCCCccHHHHHH
Confidence 46777888888888766543321 011122223334444566 68899999999999997664 6888999999
Q ss_pred HHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhcCCCCCC-----hHHHHHHHHHhh
Q 005697 293 SSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPE-----WYPLLQVIVGRI 344 (682)
Q Consensus 293 ~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~~l~p~-----l~~llq~Ll~~L 344 (682)
..++..|+|.+ ..||-.|+.=+..|+.+.-..+. +...++..++.+
T Consensus 402 ~la~grl~DkS------slVRk~Ai~Ll~~~L~~~Pfs~~~~~~~~~~~~E~~~~~~ 452 (1251)
T KOG0414|consen 402 ELAIGRLEDKS------SLVRKNAIQLLSSLLDRHPFSSELRSDDLRAKLEKELQKL 452 (1251)
T ss_pred HHHhccccccc------HHHHHHHHHHHHHHHhcCCchhhhcchhhhhhHHHHHHhh
Confidence 99999999988 89999999999999886322221 334456666544
No 100
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=68.08 E-value=2.4e+02 Score=32.90 Aligned_cols=254 Identities=14% Similarity=0.118 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhc-CChhhHHHHHHHHHHhhccCC
Q 005697 225 YFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASC-LPEDISADVYSSLLKALQMLD 303 (682)
Q Consensus 225 kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~-l~~~~l~~il~~ll~~L~d~~ 303 (682)
.-|-..++-...+.+.+ .+ +.-..++.++-..++ +..-.+.--+...+-.|+.. ..++.+.+..+.+-..|..+.
T Consensus 241 q~a~V~lvr~~~~ll~~-n~-q~~~q~rpfL~~wls--~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~r 316 (898)
T COG5240 241 QLAGVLLVRATVELLKE-NS-QALLQLRPFLNSWLS--DKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTR 316 (898)
T ss_pred chhheehHHHHHHHHHh-Ch-HHHHHHHHHHHHHhc--CcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcch
Confidence 34444555556666553 22 221122222223344 44555555556666677765 678888888888888888777
Q ss_pred CCCCCCcchhHHHHHHHHHhhhc-CCCCCChHHHHHHHHHhhcccchhhhHH-HHHHHHHHHHhhhhhhchHHHHHHHHH
Q 005697 304 KGDTSCYPVRASAAGAIVGLLEN-DYMPPEWYPLLQVIVGRIGYEDEENSIL-FELLSSVVGAANENVADHIPYIVSSLV 381 (682)
Q Consensus 304 ~~~~~~~pVrv~Aa~AL~~~l~~-~~l~p~l~~llq~Ll~~L~~e~~e~d~l-~~~L~~iVe~~~e~i~P~a~~L~~~L~ 381 (682)
...|.+|-+-|.++... +.....-.+=++.|.. . +|..+ +.++.++...+.++ =+..|+
T Consensus 317 ------v~~rFsA~Riln~lam~~P~kv~vcN~evEsLIs----d--~Nr~IstyAITtLLKTGt~e-------~idrLv 377 (898)
T COG5240 317 ------VVLRFSAMRILNQLAMKYPQKVSVCNKEVESLIS----D--ENRTISTYAITTLLKTGTEE-------TIDRLV 377 (898)
T ss_pred ------HHHHHHHHHHHHHHHhhCCceeeecChhHHHHhh----c--ccccchHHHHHHHHHcCchh-------hHHHHH
Confidence 88999999999887652 2111111122233333 1 34443 77888888888776 233444
Q ss_pred HHHHHhcCCCCCCChhhHHhHHHHHHHHHHhhhhhchhhhhhhccCCccchhHhHHHHHHHHHHHhhhhhcccccccccC
Q 005697 382 AAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVS 461 (682)
Q Consensus 382 ~~f~k~~~~~~~~~~~~~~~~~~aLa~~~~~~~~~~~~~~~~~~~~d~~~~~~~a~L~ti~tllq~~~~~~~~e~~~s~~ 461 (682)
.++...+++..+..--++-+++++|+ . .+..+....|+-++.+|- . +
T Consensus 378 ~~I~sfvhD~SD~FKiI~ida~rsLs---l-----------------~Fp~k~~s~l~FL~~~L~------------~-e 424 (898)
T COG5240 378 NLIPSFVHDMSDGFKIIAIDALRSLS---L-----------------LFPSKKLSYLDFLGSSLL------------Q-E 424 (898)
T ss_pred HHHHHHHHhhccCceEEeHHHHHHHH---h-----------------hCcHHHHHHHHHHHHHHH------------h-c
Confidence 44444445554432223333333331 0 124455667888888872 1 2
Q ss_pred CCcchHHhHHHHHHHHHhhcCchhHHHhhhHHHHHHHHHHHHhcccchhhhhhchHHHHHHHHHhhhccccccccccccC
Q 005697 462 APPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIVRQM 541 (682)
Q Consensus 462 ~~~~~~~~le~~l~~vi~~i~~~~~~l~~~~~~~l~e~~~li~~W~~~e~~~~~~~~dyl~evi~l~~~~~L~Nfi~~g~ 541 (682)
..-+--.++-+.+..++.++.+. .+..+++.|+.|...+. . ++.. .+...+-++.
T Consensus 425 Gg~eFK~~~Vdaisd~~~~~p~s-------kEraLe~LC~fIEDcey-----~--------~I~v-----rIL~iLG~Eg 479 (898)
T COG5240 425 GGLEFKKYMVDAISDAMENDPDS-------KERALEVLCTFIEDCEY-----H--------QITV-----RILGILGREG 479 (898)
T ss_pred ccchHHHHHHHHHHHHHhhCchH-------HHHHHHHHHHHHhhcch-----h--------HHHH-----HHHHHhcccC
Confidence 22223345556677777787332 23355666666533222 1 2223 3444444555
Q ss_pred CCCCCCCCChhHHHHHHH
Q 005697 542 PPPPAPPVPPQSIIEGIG 559 (682)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~ 559 (682)
|.-+.+..|.+-++.++.
T Consensus 480 P~a~~P~~yvrhIyNR~i 497 (898)
T COG5240 480 PRAKTPGKYVRHIYNRLI 497 (898)
T ss_pred CCCCCcchHHHHHHHHHH
Confidence 555556667777777664
No 101
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=67.73 E-value=25 Score=43.48 Aligned_cols=78 Identities=17% Similarity=-0.011 Sum_probs=54.6
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhc
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQ 300 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~ 300 (682)
++..+.+|+.++|.+... ..+ ...+...+. ++++.+|..|.+.++++.. + +.++.++.+|.
T Consensus 788 d~~VR~aA~~aLg~~g~~------~~~----~~~l~~aL~--d~d~~VR~~Aa~aL~~l~~---~----~a~~~L~~~L~ 848 (897)
T PRK13800 788 DPLVRAAALAALAELGCP------PDD----VAAATAALR--ASAWQVRQGAARALAGAAA---D----VAVPALVEALT 848 (897)
T ss_pred CHHHHHHHHHHHHhcCCc------chh----HHHHHHHhc--CCChHHHHHHHHHHHhccc---c----chHHHHHHHhc
Confidence 466677777777765321 111 122445566 6789999999999988753 2 34577888888
Q ss_pred cCCCCCCCCcchhHHHHHHHHHh
Q 005697 301 MLDKGDTSCYPVRASAAGAIVGL 323 (682)
Q Consensus 301 d~~~~~~~~~pVrv~Aa~AL~~~ 323 (682)
|++ .-||..|+.||..+
T Consensus 849 D~~------~~VR~~A~~aL~~~ 865 (897)
T PRK13800 849 DPH------LDVRKAAVLALTRW 865 (897)
T ss_pred CCC------HHHHHHHHHHHhcc
Confidence 888 88999999999875
No 102
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.05 E-value=61 Score=37.44 Aligned_cols=146 Identities=16% Similarity=0.163 Sum_probs=94.8
Q ss_pred hhhhcccCCCCCcccHHHHHHHHHHhhhcCChh---hHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhh---cC
Q 005697 254 RVLPLYSVSVCLPYLVASANWILGELASCLPED---ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLE---ND 327 (682)
Q Consensus 254 ~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~---~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~---~~ 327 (682)
...|.++ +++|+++..|..-+.+|-...+++ ++..++.+++.|+.+.+ ..-.+..|..-=..++. .+
T Consensus 254 vlv~~l~--ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e-----~~~i~~~a~~~n~~l~~l~s~~ 326 (675)
T KOG0212|consen 254 VLVPHLQ--SSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTE-----EMSIKEYAQMVNGLLLKLVSSE 326 (675)
T ss_pred hcccccc--CCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCc-----cccHHHHHHHHHHHHHHHHhhh
Confidence 4567788 899999999998889998876544 56788889999998876 13466666554333332 22
Q ss_pred CCC--CChHHHHHHHHHhhcccc-hhhhHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHhcCCCCCCChhhHHhHHH
Q 005697 328 YMP--PEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFA 404 (682)
Q Consensus 328 ~l~--p~l~~llq~Ll~~L~~e~-~e~d~l~~~L~~iVe~~~e~i~P~a~~L~~~L~~~f~k~~~~~~~~~~~~~~~~~~ 404 (682)
... -...++++.+.+-+.++. +.--.+.+=+..+-.+++.++.-|...|-..| ++.+.++.+ .++...++
T Consensus 327 ~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tL----L~tLsd~sd---~vvl~~L~ 399 (675)
T KOG0212|consen 327 RLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTL----LKTLSDRSD---EVVLLALS 399 (675)
T ss_pred hhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHH----HHhhcCchh---HHHHHHHH
Confidence 222 234567777777665554 11222355556667777888777776665554 444466655 58888888
Q ss_pred HHHHHHHhh
Q 005697 405 ALALMAQSW 413 (682)
Q Consensus 405 aLa~~~~~~ 413 (682)
-++.+++.-
T Consensus 400 lla~i~~s~ 408 (675)
T KOG0212|consen 400 LLASICSSS 408 (675)
T ss_pred HHHHHhcCc
Confidence 887777643
No 103
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.85 E-value=3.9e+02 Score=32.74 Aligned_cols=94 Identities=22% Similarity=0.126 Sum_probs=65.3
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCC---hhhHHHHHHHHHH
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLP---EDISADVYSSLLK 297 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~---~~~l~~il~~ll~ 297 (682)
-.+.-|+.+..+-.+.+...+ |.+.++.++ +.-.. +|....|+-+|-.+|....... .+.+.+++..+++
T Consensus 823 ~lkVGEai~k~~qa~Gel~~~----y~~~Li~tf-l~gvr--epd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~ 895 (982)
T KOG4653|consen 823 RLKVGEAILKVAQALGELVFK----YKAVLINTF-LSGVR--EPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILS 895 (982)
T ss_pred eehHHHHHHHHHHHhccHHHH----HHHHHHHHH-HHhcC--CchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 346667777776666666543 333222222 23344 5788999999999999987532 5578888888888
Q ss_pred hhccCCCCCCCCcchhHHHHHHHHHhhhc
Q 005697 298 ALQMLDKGDTSCYPVRASAAGAIVGLLEN 326 (682)
Q Consensus 298 ~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~ 326 (682)
..+..+ .++||-+|+.-|..++..
T Consensus 896 l~~~d~-----s~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 896 LETTDG-----SVLVRRAAVHLLAELLNG 919 (982)
T ss_pred HHccCC-----chhhHHHHHHHHHHHHhc
Confidence 776543 499999999999988873
No 104
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=59.60 E-value=4.5e+02 Score=33.36 Aligned_cols=104 Identities=18% Similarity=0.106 Sum_probs=69.9
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhc
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQ 300 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~ 300 (682)
++-..-||..++|-+--.=.+.....+ ++|.+. +.. +|.|.+|+.+...+|-|+=++|. .+...-+.+...|+
T Consensus 936 dp~Lq~AAtLaL~klM~iSa~fces~l-~llfti----mek-sp~p~IRsN~VvalgDlav~fpn-lie~~T~~Ly~rL~ 1008 (1251)
T KOG0414|consen 936 DPELQAAATLALGKLMCISAEFCESHL-PLLFTI----MEK-SPSPRIRSNLVVALGDLAVRFPN-LIEPWTEHLYRRLR 1008 (1251)
T ss_pred CHHHHHHHHHHHHHHhhhhHHHHHHHH-HHHHHH----Hhc-CCCceeeecchheccchhhhccc-ccchhhHHHHHHhc
Confidence 455677777777753211100000012 222222 333 79999999999888888777653 66667788889999
Q ss_pred cCCCCCCCCcchhHHHHHHHHHhhhcC--CCCCChHHHH
Q 005697 301 MLDKGDTSCYPVRASAAGAIVGLLEND--YMPPEWYPLL 337 (682)
Q Consensus 301 d~~~~~~~~~pVrv~Aa~AL~~~l~~~--~l~p~l~~ll 337 (682)
|++ .-||-.|...|..++-++ .++.+++..-
T Consensus 1009 D~~------~~vRkta~lvlshLILndmiKVKGql~eMA 1041 (1251)
T KOG0414|consen 1009 DES------PSVRKTALLVLSHLILNDMIKVKGQLSEMA 1041 (1251)
T ss_pred Ccc------HHHHHHHHHHHHHHHHhhhhHhcccHHHHH
Confidence 998 889999999999999987 4566666554
No 105
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.45 E-value=39 Score=40.18 Aligned_cols=69 Identities=28% Similarity=0.201 Sum_probs=52.5
Q ss_pred HHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhc
Q 005697 247 TANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 326 (682)
Q Consensus 247 le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~ 326 (682)
..-...+.++-++. +++|.+|+-|....+..+ -+.....+..-+.+++.|.+ ..||..|+.....+-+.
T Consensus 83 ~a~~avnt~~kD~~--d~np~iR~lAlrtm~~l~---v~~i~ey~~~Pl~~~l~d~~------~yvRktaa~~vakl~~~ 151 (734)
T KOG1061|consen 83 LAILAVNTFLKDCE--DPNPLIRALALRTMGCLR---VDKITEYLCDPLLKCLKDDD------PYVRKTAAVCVAKLFDI 151 (734)
T ss_pred HHHhhhhhhhccCC--CCCHHHHHHHhhceeeEe---ehHHHHHHHHHHHHhccCCC------hhHHHHHHHHHHHhhcC
Confidence 33455566667777 799999998875544332 25567778888999999988 89999999999988664
No 106
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=56.09 E-value=9.7 Score=41.04 Aligned_cols=68 Identities=18% Similarity=0.261 Sum_probs=48.0
Q ss_pred hhhcccCCCCCcccHHHHHHHHHHhhhcCChhhH-----HHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhcCCC
Q 005697 255 VLPLYSVSVCLPYLVASANWILGELASCLPEDIS-----ADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYM 329 (682)
Q Consensus 255 VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l-----~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~~l 329 (682)
..|.|+ +|---+|..|||.++....- +.+.. ..+.+-+++.|...+ +-.|-+||-|+.+...+..=
T Consensus 332 ~~~lLs--~~ke~irKEaCWTiSNITAG-nteqiqavid~nliPpLi~lls~ae------~k~kKEACWAisNatsgg~~ 402 (526)
T COG5064 332 FRSLLS--SPKENIRKEACWTISNITAG-NTEQIQAVIDANLIPPLIHLLSSAE------YKIKKEACWAISNATSGGLN 402 (526)
T ss_pred HHHHhc--ChhhhhhhhhheeecccccC-CHHHHHHHHhcccchHHHHHHHHHH------HHHHHHHHHHHHhhhccccC
Confidence 345566 67779999999999876432 22222 234566778887776 99999999999998877544
Q ss_pred CC
Q 005697 330 PP 331 (682)
Q Consensus 330 ~p 331 (682)
+|
T Consensus 403 ~P 404 (526)
T COG5064 403 RP 404 (526)
T ss_pred Cc
Confidence 44
No 107
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=55.59 E-value=2.3e+02 Score=28.44 Aligned_cols=135 Identities=17% Similarity=0.063 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCC
Q 005697 226 FGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKG 305 (682)
Q Consensus 226 egaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~d~~~~ 305 (682)
+-++..++++-+++.....+.+.+.+.+ +-++.. ++..-.|..+-.++|..-..+.|+.+.++++.-+.. ++.
T Consensus 18 ~~vl~v~s~lf~~lg~~~~~~l~~~L~~--l~~lr~-~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl~~---~~~- 90 (198)
T PF08161_consen 18 PEVLNVLSALFEKLGERSSPLLKPILKT--LGDLRE-SEDFSFRKELEQVLGAAIRAMGPEQVLSILPLNLDN---ADD- 90 (198)
T ss_pred HHHHHHHHHHHHHHhhhccHHHHHHHHH--HHHHHc-CCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCCccC---CCc-
Confidence 4567788888888776444555555543 345553 344667888889999988888887766666533222 110
Q ss_pred CCCCcchhHHHHHHHHHhhhcCCCCCChHHHHHHHHHhhcccc-h----hhhHHHHHHHHHHHHhhhhhhchHHHHHHHH
Q 005697 306 DTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYED-E----ENSILFELLSSVVGAANENVADHIPYIVSSL 380 (682)
Q Consensus 306 ~~~~~pVrv~Aa~AL~~~l~~~~l~p~l~~llq~Ll~~L~~e~-~----e~d~l~~~L~~iVe~~~e~i~P~a~~L~~~L 380 (682)
. +.=+.++.|++..... +.. + +.=-+.+.+..-+....+.-.+....+.+.+
T Consensus 91 ---~-----------------~~~raWLLPlLr~~i~---~~~L~fF~~~~lPla~~~~~~~~~~~~~~~~~~ak~~~~l 147 (198)
T PF08161_consen 91 ---S-----------------QPGRAWLLPLLRDHIR---NASLSFFVEEFLPLARRLRQKAQKASEAGKSVEAKIYETL 147 (198)
T ss_pred ---C-----------------CcccchhHHHHHHhcc---CCChHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 0 1234456677666533 221 1 1111233444444444445556666777777
Q ss_pred HHHHHHhcCC
Q 005697 381 VAAISKHMHP 390 (682)
Q Consensus 381 ~~~f~k~~~~ 390 (682)
+.+++.+++.
T Consensus 148 ~~QlWslLP~ 157 (198)
T PF08161_consen 148 VQQLWSLLPG 157 (198)
T ss_pred HHHHHHHhHH
Confidence 7777776543
No 108
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=53.08 E-value=1.3e+02 Score=29.96 Aligned_cols=54 Identities=7% Similarity=0.026 Sum_probs=36.2
Q ss_pred CCCCChHHHHHHHHHhhcccchhhhHHHHHHHHHHHH-hhhhhhchHHHHHHHHHHHH
Q 005697 328 YMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGA-ANENVADHIPYIVSSLVAAI 384 (682)
Q Consensus 328 ~l~p~l~~llq~Ll~~L~~e~~e~d~l~~~L~~iVe~-~~e~i~P~a~~L~~~L~~~f 384 (682)
...++|+-.+++|-. ..... .=...+....+++. .++.+.|..++|+.-|.+++
T Consensus 35 dy~~~Lpif~dGL~E-t~~Py--~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL 89 (183)
T PF10274_consen 35 DYHHYLPIFFDGLRE-TEHPY--RFLARQGIKDLLERGGGEKILPVLPQLIIPLKRAL 89 (183)
T ss_pred chhhHHHHHHhhhhc-cCccH--HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 445667767676644 11111 22335566677777 88889999999999988876
No 109
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.08 E-value=2.2e+02 Score=34.74 Aligned_cols=124 Identities=15% Similarity=0.001 Sum_probs=87.8
Q ss_pred hhhhcccCCCCCcccHHHHHHHHHHhhhc---CChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhcCCCC
Q 005697 254 RVLPLYSVSVCLPYLVASANWILGELASC---LPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMP 330 (682)
Q Consensus 254 ~VlP~l~~~s~~p~LrarA~~~l~~f~~~---l~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~~l~ 330 (682)
..+-.+. ++.+-.|+.|...+.++.+. -+-.+...++...+..|.|.| .=|...|..++..+++. .+
T Consensus 731 eai~sl~--d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkded------syvyLnaI~gv~~Lcev--y~ 800 (982)
T KOG4653|consen 731 EAISSLH--DDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDED------SYVYLNAIRGVVSLCEV--YP 800 (982)
T ss_pred HHHHHhc--CCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccC------ceeeHHHHHHHHHHHHh--cc
Confidence 4455566 68899999999999998873 244567789999999999988 67899999999999984 22
Q ss_pred C-ChHHHHHHHHHhhcccc--hhhhHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHhcCCCC
Q 005697 331 P-EWYPLLQVIVGRIGYED--EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSS 392 (682)
Q Consensus 331 p-~l~~llq~Ll~~L~~e~--~e~d~l~~~L~~iVe~~~e~i~P~a~~L~~~L~~~f~k~~~~~~ 392 (682)
- .++.+.+.+.+ -.+.- ++-=.+-+++..++.+-+|-+.-|-. .|.++|++-..+|.
T Consensus 801 e~il~dL~e~Y~s-~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~----~Li~tfl~gvrepd 860 (982)
T KOG4653|consen 801 EDILPDLSEEYLS-EKKKLQTDYRLKVGEAILKVAQALGELVFKYKA----VLINTFLSGVREPD 860 (982)
T ss_pred hhhHHHHHHHHHh-cccCCCccceehHHHHHHHHHHHhccHHHHHHH----HHHHHHHHhcCCch
Confidence 2 34445555666 33221 12223466788888888877766555 56778999887663
No 110
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=52.27 E-value=15 Score=24.94 Aligned_cols=28 Identities=25% Similarity=0.209 Sum_probs=21.9
Q ss_pred HhhhhcccCCCCCcccHHHHHHHHHHhhhc
Q 005697 253 SRVLPLYSVSVCLPYLVASANWILGELASC 282 (682)
Q Consensus 253 ~~VlP~l~~~s~~p~LrarA~~~l~~f~~~ 282 (682)
..++..++ ++++-+|..|++.+|++.+.
T Consensus 3 p~l~~~l~--D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 3 PILLQLLN--DPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHT---SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcC--CCCHHHHHHHHHHHHHHHhh
Confidence 34555667 79999999999999999763
No 111
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.59 E-value=2.7e+02 Score=33.29 Aligned_cols=157 Identities=21% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCCCCCcc
Q 005697 232 YGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYP 311 (682)
Q Consensus 232 lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~d~~~~~~~~~p 311 (682)
+|.+.-.+.-....-+-....+.|-.++. |.+|--..-|+.++|..++ .++...+...+-+.|..++ +...
T Consensus 93 IGYl~is~L~n~n~dl~klvin~iknDL~--srn~~fv~LAL~~I~niG~---re~~ea~~~DI~KlLvS~~----~~~~ 163 (938)
T KOG1077|consen 93 IGYLFISLLLNENSDLMKLVINSIKNDLS--SRNPTFVCLALHCIANIGS---REMAEAFADDIPKLLVSGS----SMDY 163 (938)
T ss_pred HhHHHHHHHHhcchHHHHHHHHHHHhhhh--cCCcHHHHHHHHHHHhhcc---HhHHHHhhhhhHHHHhCCc----chHH
Q ss_pred hhHHHHHHHHHhhhc--CCCCCChHHHHHHHHHhhcccc-hhhhHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHhc
Q 005697 312 VRASAAGAIVGLLEN--DYMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHM 388 (682)
Q Consensus 312 Vrv~Aa~AL~~~l~~--~~l~p~l~~llq~Ll~~L~~e~-~e~d~l~~~L~~iVe~~~e~i~P~a~~L~~~L~~~f~k~~ 388 (682)
||-.||.+|-.+.+. |.+.| ..-.+.++..|.... .-.......++.+|.+-.++-.--.+.-+..|.......-
T Consensus 164 vkqkaALclL~L~r~spDl~~~--~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~ 241 (938)
T KOG1077|consen 164 VKQKAALCLLRLFRKSPDLVNP--GEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVG 241 (938)
T ss_pred HHHHHHHHHHHHHhcCccccCh--hhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcc
Q ss_pred CC--------CCCCChhhH
Q 005697 389 HP--------SSEPWPQVV 399 (682)
Q Consensus 389 ~~--------~~~~~~~~~ 399 (682)
.+ .|.||.++.
T Consensus 242 t~~qdYTyy~vP~PWL~vK 260 (938)
T KOG1077|consen 242 TSLQDYTYYFVPAPWLQVK 260 (938)
T ss_pred cchhhceeecCCChHHHHH
No 112
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=50.10 E-value=78 Score=33.23 Aligned_cols=79 Identities=16% Similarity=0.254 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHhhhHHHHHHHHHHHHHhccccccCcccCHHHHHHHHHHHHHHhccCcccccccccHHH
Q 005697 21 FKTGKRGLLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLVSPHFSV 100 (682)
Q Consensus 21 ~K~kKw~~~~l~~l~~Ry~~~~~~f~p~il~~~l~~l~~~~~~~~~~~lsd~~i~~~~~fl~~~v~~~~~~~ll~p~l~~ 100 (682)
-+.++++++++..++++|+......-+.|+..+.+.++.. ..+|.+..+|+.+..+++. |.+ .++.++
T Consensus 96 q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gE--------kDPRnLl~~F~l~~~i~~~---~~~-~~~~e~ 163 (262)
T PF14500_consen 96 QSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGE--------KDPRNLLLSFKLLKVILQE---FDI-SEFAED 163 (262)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccC--------CCHHHHHHHHHHHHHHHHh---ccc-chhHHH
Confidence 5789999999999999999888777788999999988763 3589999999999988764 444 566666
Q ss_pred HHHHHhhccccC
Q 005697 101 LLDKAIFPALVL 112 (682)
Q Consensus 101 Li~~vIfP~l~~ 112 (682)
+.+ +++.|.-+
T Consensus 164 lFd-~~~cYFPI 174 (262)
T PF14500_consen 164 LFD-VFSCYFPI 174 (262)
T ss_pred HHH-Hhhheeee
Confidence 654 45666554
No 113
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=50.04 E-value=3.6e+02 Score=29.00 Aligned_cols=98 Identities=22% Similarity=0.093 Sum_probs=61.5
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcch------hHHHHHHHhhhhcccC------CCCCcccHHHHHHHHHHhhhcCCh---
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSE------FTANLVRSRVLPLYSV------SVCLPYLVASANWILGELASCLPE--- 285 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~------~le~fL~~~VlP~l~~------~s~~p~LrarA~~~l~~f~~~l~~--- 285 (682)
..+.+-+++.++|.+.-........ .++.++. ...|.-.. ..+.+-+.+.|+..-+-+...++.
T Consensus 144 ~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~-~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~ 222 (309)
T PF05004_consen 144 SPKARAACLEALAICTFVGGSDEEETEELMESLESIFL-LSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKL 222 (309)
T ss_pred chHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHH-HHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHH
Confidence 4566788888888766554321111 1222222 22233221 123467888888776777666654
Q ss_pred -hhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhh
Q 005697 286 -DISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLE 325 (682)
Q Consensus 286 -~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~ 325 (682)
..+...++.+...|..++ +-||+.|+.||.-+.+
T Consensus 223 ~~~~~~~~~~l~~lL~s~d------~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 223 EDLLEEALPALSELLDSDD------VDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHHHH
Confidence 345566777788887777 8999999999998766
No 114
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=49.57 E-value=3.7e+02 Score=29.01 Aligned_cols=62 Identities=13% Similarity=0.287 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHhcCCCCCCChhhHHhHHHHHHHHHHh
Q 005697 351 NSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQS 412 (682)
Q Consensus 351 ~d~l~~~L~~iVe~~~e~i~P~a~~L~~~L~~~f~k~~~~~~~~~~~~~~~~~~aLa~~~~~ 412 (682)
...++.++.++|.+.++.+.|+.+.+...+....+....+.-+..|..+..-|+-|.++.+.
T Consensus 89 ~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~ 150 (319)
T PF08767_consen 89 EPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEH 150 (319)
T ss_dssp -HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHH
Confidence 34477899999999999999999999999999999998888777889998888888888874
No 115
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=48.76 E-value=23 Score=25.55 Aligned_cols=28 Identities=29% Similarity=0.202 Sum_probs=24.3
Q ss_pred HHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhh
Q 005697 291 VYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLL 324 (682)
Q Consensus 291 il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l 324 (682)
.++.++++|.+++ .-||..|+.||.++.
T Consensus 13 ~i~~Lv~ll~~~~------~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPD------PEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSS------HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCC------HHHHHHHHHHHHHHh
Confidence 5778889998777 899999999999875
No 116
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=48.21 E-value=1.3e+02 Score=30.93 Aligned_cols=169 Identities=12% Similarity=0.123 Sum_probs=86.5
Q ss_pred HHHHHhcCCCCCCCCCccccchhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccC---CCCCcccHHHHHHHHH
Q 005697 201 VLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSV---SVCLPYLVASANWILG 277 (682)
Q Consensus 201 i~~~L~~~~~~~~~~~~~~~~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~---~s~~p~LrarA~~~l~ 277 (682)
++++++-|...+.+.- +...-.....||.++-++++.=.. ++-++..-+--++.|.+.. .+++-+||-.+.=++|
T Consensus 94 LqEiisvYpiL~p~~l-~~~~snRvcnaL~lLQclaShPet-k~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIg 171 (315)
T COG5209 94 LQEIISVYPILSPSKL-DERESNRVCNALNLLQCLASHPET-KKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIG 171 (315)
T ss_pred HHHHHhhhhccCcccc-CchhhhHHHHHHHHHHHHhcCcch-heeeeecccceeeHhhhhccccCCccceeeehHHHHHH
Confidence 6666666655432211 112234467788888887766322 2223322222344566653 2577899999998888
Q ss_pred HhhhcCChh-----hHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhcCCCCCChHHHHHHHHHhhcccchhhh
Q 005697 278 ELASCLPED-----ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENS 352 (682)
Q Consensus 278 ~f~~~l~~~-----~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~~l~p~l~~llq~Ll~~L~~e~~e~d 352 (682)
.+-..=++. .-.++.+..++-+.... ---+.-|+.-++.++-++.=-.|+=+.+++.-.
T Consensus 172 aLvkNdsq~vi~fLltTeivPLcLrIme~gS------ElSktvaifI~qkil~dDvGLqYiCqT~eRFyA---------- 235 (315)
T COG5209 172 ALVKNDSQYVIKFLLTTEIVPLCLRIMELGS------ELSKTVAIFIFQKILGDDVGLQYICQTFERFYA---------- 235 (315)
T ss_pred HHHhCCCHHHHHHHHhhhHHHHHHHHHHhhh------HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH----------
Confidence 876532222 22456666666665443 223344444444444443322223223222222
Q ss_pred HHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHhcCCC
Q 005697 353 ILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPS 391 (682)
Q Consensus 353 ~l~~~L~~iVe~~~e~i~P~a~~L~~~L~~~f~k~~~~~ 391 (682)
+..++..+|+.. +.-....|..+....++|+..++
T Consensus 236 -v~~vln~mv~ql---Vs~~~~RLlKh~iRcYlRLsd~p 270 (315)
T COG5209 236 -VNLVLNSMVSQL---VSLGSTRLLKHAIRCYLRLSDKP 270 (315)
T ss_pred -HHHHHHHHHHHH---hhccchhHHHHHHHHheeecCCH
Confidence 122222222221 22345678888889999987655
No 117
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=48.18 E-value=1.7e+02 Score=28.22 Aligned_cols=95 Identities=12% Similarity=0.096 Sum_probs=64.6
Q ss_pred ChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhc---CCCCCChHHHHHHHHHhhcccc--hhhhHHHHHH
Q 005697 284 PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN---DYMPPEWYPLLQVIVGRIGYED--EENSILFELL 358 (682)
Q Consensus 284 ~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~---~~l~p~l~~llq~Ll~~L~~e~--~e~d~l~~~L 358 (682)
....+......+.+.|++++ .--|-.++.-+...+++ +.+..+-.+.++.+++.|.... .-.+....+|
T Consensus 19 ~~~~l~~l~~ri~~LL~s~~------~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L 92 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQSKS------AYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITL 92 (165)
T ss_pred CHHHHHHHHHHHHHHhCCCC------hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 35577888888999998877 67889999888888886 3566667778888888676643 1233445556
Q ss_pred HHHHHHhh-------hhhhchHHHHHHHHHHHH
Q 005697 359 SSVVGAAN-------ENVADHIPYIVSSLVAAI 384 (682)
Q Consensus 359 ~~iVe~~~-------e~i~P~a~~L~~~L~~~f 384 (682)
..+..... |..+|.++.+++.+.+..
T Consensus 93 ~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~ 125 (165)
T PF08167_consen 93 TRLFDLIRGKPTLTREIATPNLPKFIQSLLQLL 125 (165)
T ss_pred HHHHHHhcCCCchHHHHhhccHHHHHHHHHHHH
Confidence 65543322 335777777766665544
No 118
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=47.43 E-value=1.3e+02 Score=36.38 Aligned_cols=89 Identities=18% Similarity=0.101 Sum_probs=58.7
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHH-HHHHHHhh
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADV-YSSLLKAL 299 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~i-l~~ll~~L 299 (682)
|...+-.||+.+|.+...= .++. +..-|...+. +++|++|..|.-++.++-+ ++++...+. ...+++.|
T Consensus 105 N~~iR~~AlR~ls~l~~~e------l~~~-~~~~ik~~l~--d~~ayVRk~Aalav~kly~-ld~~l~~~~g~~~~l~~l 174 (757)
T COG5096 105 NEEIRGFALRTLSLLRVKE------LLGN-IIDPIKKLLT--DPHAYVRKTAALAVAKLYR-LDKDLYHELGLIDILKEL 174 (757)
T ss_pred CHHHHHHHHHHHHhcChHH------HHHH-HHHHHHHHcc--CCcHHHHHHHHHHHHHHHh-cCHhhhhcccHHHHHHHH
Confidence 6778888888888765431 1222 2223444567 7999999999999988765 455555555 44444444
Q ss_pred -ccCCCCCCCCcchhHHHHHHHHHhhh
Q 005697 300 -QMLDKGDTSCYPVRASAAGAIVGLLE 325 (682)
Q Consensus 300 -~d~~~~~~~~~pVrv~Aa~AL~~~l~ 325 (682)
.|++ +.|...|..++..+-.
T Consensus 175 ~~D~d------P~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 175 VADSD------PIVIANALASLAEIDP 195 (757)
T ss_pred hhCCC------chHHHHHHHHHHHhch
Confidence 4666 6777888888877654
No 119
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=47.23 E-value=53 Score=36.27 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhcCCCCCChHHHHHHHHH
Q 005697 289 ADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVG 342 (682)
Q Consensus 289 ~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~~l~p~l~~llq~Ll~ 342 (682)
...+.+-+.+..|.| +-||++|.+-|-.||..+ ..|-+.++|-.||+
T Consensus 60 ~~a~da~~d~~ed~d------~~ir~qaik~lp~fc~~d-~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 60 DEAIDAQLDLCEDDD------VGIRRQAIKGLPLFCKGD-ALSRVNDVLVQLLN 106 (460)
T ss_pred hHHHHhhhccccccc------hhhHHHHHhccchhccCc-hhhhhHHHHHHHHH
Confidence 345666677777777 899999999999999974 33444444444444
No 120
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=46.13 E-value=32 Score=42.63 Aligned_cols=56 Identities=25% Similarity=0.188 Sum_probs=45.5
Q ss_pred hhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhh
Q 005697 255 VLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLE 325 (682)
Q Consensus 255 VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~ 325 (682)
+.+.|. ++.|.+|..|+..++++.. ..+++.+.+.|.|++ ..||..|+.||..+.+
T Consensus 626 L~~~L~--D~d~~VR~~Av~~L~~~~~-------~~~~~~L~~aL~D~d------~~VR~~Aa~aL~~l~~ 681 (897)
T PRK13800 626 LAPYLA--DPDPGVRRTAVAVLTETTP-------PGFGPALVAALGDGA------AAVRRAAAEGLRELVE 681 (897)
T ss_pred HHHHhc--CCCHHHHHHHHHHHhhhcc-------hhHHHHHHHHHcCCC------HHHHHHHHHHHHHHHh
Confidence 345566 7999999999999999853 235677778888888 8899999999998754
No 121
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=45.89 E-value=67 Score=35.33 Aligned_cols=77 Identities=12% Similarity=0.142 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHhhhHHHHHHHHHHHHHhccccccCcccCHHHHHHHHHHHHHHhccC-ccccccc-ccHHH
Q 005697 23 TGKRGLLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETG-PGWRLVS-PHFSV 100 (682)
Q Consensus 23 ~kKw~~~~l~~l~~Ry~~~~~~f~p~il~~~l~~l~~~~~~~~~~~lsd~~i~~~~~fl~~~v~~~-~~~~ll~-p~l~~ 100 (682)
+-|.|++.|.-.+...+.-+.+++|.|+...-++... ..+...++|||+.+++.+ ..+.-+. .++..
T Consensus 251 ~a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~i~tt-----------~~~Ai~ILEFLs~L~~lP~~ly~nF~~~~y~~ 319 (356)
T PF03542_consen 251 TAKPCIHALTICCYEMPDSMKKLLPSILLKLSKISTT-----------PNMAIHILEFLSSLSRLPNHLYSNFTEDEYKR 319 (356)
T ss_pred cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc-----------hhhHHHHHHHHHHHhhCcHHHhcCCCHHHHHH
Confidence 4444555555555554445566666666555433332 456778999999999998 8777664 67777
Q ss_pred HHHHHhhcccc
Q 005697 101 LLDKAIFPALV 111 (682)
Q Consensus 101 Li~~vIfP~l~ 111 (682)
+.. +.|||+.
T Consensus 320 VF~-I~l~Y~~ 329 (356)
T PF03542_consen 320 VFA-IALPYTQ 329 (356)
T ss_pred HHH-HHhhccc
Confidence 665 5588865
No 122
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.84 E-value=6.9e+02 Score=31.10 Aligned_cols=110 Identities=10% Similarity=0.116 Sum_probs=63.8
Q ss_pred HHHHHHHhhhc----CChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhcC-------CCCCChHHHHHHH
Q 005697 272 ANWILGELASC----LPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND-------YMPPEWYPLLQVI 340 (682)
Q Consensus 272 A~~~l~~f~~~----l~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~-------~l~p~l~~llq~L 340 (682)
+..-+|.++.. +.+..+.-+|+. +..+.++. .-|+--|..|+...+.+- .+....--++..+
T Consensus 568 ~ld~I~~~a~~~g~~F~~~L~~~ly~v-l~k~a~~s------~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sl 640 (1014)
T KOG4524|consen 568 VLDSIGTIAAVMGEEFQPELMDYLYPV-LEKLASPS------EAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSL 640 (1014)
T ss_pred hhhhhHHHHHHhHHHHHHHHHHHHHHH-HHHhcCch------HHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHH
Confidence 34455666664 344444444544 44455555 677777777887777652 2222233344444
Q ss_pred HHhhcccchhhhHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHhcC
Q 005697 341 VGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMH 389 (682)
Q Consensus 341 l~~L~~e~~e~d~l~~~L~~iVe~~~e~i~P~a~~L~~~L~~~f~k~~~ 389 (682)
-..+..-. .+..+..+|+.+...-+.+..|+..++++.+....-++..
T Consensus 641 a~~L~~~~-~s~~~~~Vl~vVl~~s~~~~i~~l~dvvq~i~~~lD~yH~ 688 (1014)
T KOG4524|consen 641 ALRLNTSG-MSPRVPDVLMVVLQYSDYGTIPNLKDVVQTIFKLLDYYHG 688 (1014)
T ss_pred HHHhccCC-CCchhHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHhcc
Confidence 44333222 4666777777777777777778877777777666655543
No 123
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=45.69 E-value=1.2e+02 Score=34.95 Aligned_cols=130 Identities=14% Similarity=0.161 Sum_probs=73.4
Q ss_pred HhhhHHHHHHHHHHHHHhccccccCccc-CHHHHHHHHHHHHHHhccCcccccccccH----HHHHHHHhhccccCChhh
Q 005697 42 SDKLMPDIMNSVLQIVKYSANISKLDFL-QERIISLAFDVISHVLETGPGWRLVSPHF----SVLLDKAIFPALVLNEKD 116 (682)
Q Consensus 42 ~~~f~p~il~~~l~~l~~~~~~~~~~~l-sd~~i~~~~~fl~~~v~~~~~~~ll~p~l----~~Li~~vIfP~l~~teeD 116 (682)
+..++|.|+.-+-+.+... ... .-+++.+++......+.++..+ +.|++ +.++.=++=++||.+.++
T Consensus 237 L~~LlPyFv~fIae~vs~n------i~~~nL~lL~~lm~m~rSLl~Np~i~--lepYlh~L~PSvlTCvVsk~l~~~p~~ 308 (576)
T KOG2549|consen 237 LQQLLPYFVTFIAEGVSVN------IVQNNLELLIYLMRMVRSLLDNPNIF--LEPYLHQLVPSVLTCVVSKNLCLRPEL 308 (576)
T ss_pred HHHHHHHHHHHHhhheeec------cccccHHHHHHHHHHHHHHhcCCccc--hhhHHHHHhhHHHHhhhhhhccCCccc
Confidence 3466666666655544431 111 2367888888888888886644 44554 445555566788877633
Q ss_pred hhhhhhCHHHHHHhcCCCchhhhccccccccchhHHHHHHHHHHhhcCCCCCCCCCCCcccccccccccccccccccchh
Q 005697 117 ISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTM 196 (682)
Q Consensus 117 ~Elwe~DP~EYIr~~~d~~~~~~~~~~ed~~S~R~aA~~lL~~L~~~~~~~~~~~~~~~~~~~kr~k~~~~k~~~~~~~l 196 (682)
. +-+..|--|..|+..+ |+++... -+ .+
T Consensus 309 d---------------------------nhwaLRDfAA~ll~~i-----------------~k~f~~~--y~------~L 336 (576)
T KOG2549|consen 309 D---------------------------NHWALRDFAARLLAQI-----------------CKNFSTL--YN------NL 336 (576)
T ss_pred c---------------------------chHHHHHHHHHHHHHH-----------------HHhhhhH--HH------HH
Confidence 2 2345677788888876 5443331 00 11
Q ss_pred hHHHHHHHHhcCCCCCCCCCccccchhhHHHHHHHHHHHHHH
Q 005697 197 GELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEF 238 (682)
Q Consensus 197 ~~ili~~~L~~~~~~~~~~~~~~~~~~~kegaL~~lg~la~~ 238 (682)
.+= |...+.+- -.| ..+.+...+||+..+..+...
T Consensus 337 ~~R-it~tl~k~--l~D----~~~~~st~YGai~gL~~lg~~ 371 (576)
T KOG2549|consen 337 QPR-ITRTLSKA--LLD----NKKPLSTHYGAIAGLSELGHE 371 (576)
T ss_pred HHH-HHHHHHHH--hcC----CCCCchhhhhHHHHHHHhhhh
Confidence 111 23333331 111 234678899999888876653
No 124
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.06 E-value=6.7e+02 Score=30.73 Aligned_cols=53 Identities=13% Similarity=0.041 Sum_probs=31.4
Q ss_pred CCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhh
Q 005697 263 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLE 325 (682)
Q Consensus 263 s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~ 325 (682)
+|.|-.|.+|-..+...... +..-..++ +.+..++. +.-.|+.||.++++++.
T Consensus 16 ~pdps~rk~aEr~L~~~e~q--~~y~l~lL----~Lv~~~~~----d~~~r~aaav~fKN~iK 68 (960)
T KOG1992|consen 16 SPDPSVRKPAERALRSLEGQ--QNYPLLLL----NLVANGQQ----DPQIRVAAAVYFKNYIK 68 (960)
T ss_pred CCCCccCchHHHHHHHhccC--CCchHHHH----HHHhccCc----ChhHHHHHHHHHHHHHH
Confidence 36677788887777766553 22222233 33333321 26688888888888876
No 125
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=43.89 E-value=2.4e+02 Score=35.31 Aligned_cols=98 Identities=16% Similarity=0.005 Sum_probs=64.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChh----hHHHHHHHHHH
Q 005697 222 QKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPED----ISADVYSSLLK 297 (682)
Q Consensus 222 ~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~----~l~~il~~ll~ 297 (682)
..+|--|-+.+..+.+......+.-++.=+..+-+--+.. ++.|.||-=.|-++|++=+-++.. .-....+-++.
T Consensus 571 ~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd-~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~ 649 (1387)
T KOG1517|consen 571 PEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLND-DPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLIL 649 (1387)
T ss_pred HHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcC-CccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHH
Confidence 4556666666666655432111111233333344555663 358999999999999976544432 23445667778
Q ss_pred hhccCCCCCCCCcchhHHHHHHHHHhhhc
Q 005697 298 ALQMLDKGDTSCYPVRASAAGAIVGLLEN 326 (682)
Q Consensus 298 ~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~ 326 (682)
.|.|+- +-||.+|..||..|+.+
T Consensus 650 ~LsD~v------pEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 650 LLSDPV------PEVRAAAVFALGTFLSN 672 (1387)
T ss_pred HhcCcc------HHHHHHHHHHHHHHhcc
Confidence 888886 78999999999999996
No 126
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=42.90 E-value=1.8e+02 Score=31.72 Aligned_cols=128 Identities=9% Similarity=0.034 Sum_probs=74.5
Q ss_pred HhhhhcccCCCCCcccHHHHHHHHHHhhhc--CChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhcC--C
Q 005697 253 SRVLPLYSVSVCLPYLVASANWILGELASC--LPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND--Y 328 (682)
Q Consensus 253 ~~VlP~l~~~s~~p~LrarA~~~l~~f~~~--l~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~--~ 328 (682)
..|.-.+. +...-.|.+|+.-+..=... +=|-...-+.+.+...+.+ + +.+=.+..+.++.++.|+ .
T Consensus 181 ~~It~a~~--~~~~~~r~~aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~-n------l~~L~~lm~~v~ALl~N~~l~ 251 (343)
T cd08050 181 EEITEALV--GSNEEKRREALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQ-N------LALLIYLMRMVRALLDNPNLH 251 (343)
T ss_pred HHHHHHHh--CCCHHHHHHHHHHhccCCCchhhhhHHHHHHHHHHHhhhcc-c------HHHHHHHHHHHHHHhcCCCCc
Confidence 34444444 35566777777655544432 2243444445555555543 3 667777788888889986 6
Q ss_pred CCCChHHHHHHHHHhhcccc--h----h-----hhHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHhcCCCCC
Q 005697 329 MPPEWYPLLQVIVGRIGYED--E----E-----NSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSE 393 (682)
Q Consensus 329 l~p~l~~llq~Ll~~L~~e~--~----e-----~d~l~~~L~~iVe~~~e~i~P~a~~L~~~L~~~f~k~~~~~~~ 393 (682)
+.||+-+++-.++.++.... . + -|.-...|..++.+|+..-. .|-+++..++.+.+.++..
T Consensus 252 le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~----~l~~ri~~tl~k~l~d~~~ 323 (343)
T cd08050 252 LEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYN----TLQPRITRTLLKALLDPKK 323 (343)
T ss_pred hHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCC----cHHHHHHHHHHHHHcCCCC
Confidence 78888888888777663211 0 1 12246678888888887633 2444444455554455543
No 127
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=42.69 E-value=73 Score=29.21 Aligned_cols=57 Identities=12% Similarity=0.310 Sum_probs=39.8
Q ss_pred cchhHHHHHHHHHhhhcCCCCCChHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhh
Q 005697 310 YPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANE 367 (682)
Q Consensus 310 ~pVrv~Aa~AL~~~l~~~~l~p~l~~llq~Ll~~L~~e~~e~d~l~~~L~~iVe~~~e 367 (682)
..||...|.++..+..+++ +..|+..+..+++.+.+.....+..+.+|..+.|.+.+
T Consensus 2 ~~i~~kl~~~l~~i~~~~~-P~~Wp~~l~~l~~~~~~~~~~~~~~L~iL~~l~eEi~~ 58 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDW-PQQWPDFLEDLLQLLQSSPQHLELVLRILRILPEEITD 58 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TTTSTTHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHC-hhhCchHHHHHHHHhccchhHHHHHHHHHHHHHHHHHh
Confidence 4688889999998888765 56677888888885444222455667777777666654
No 128
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.65 E-value=1.3e+02 Score=36.29 Aligned_cols=97 Identities=16% Similarity=0.081 Sum_probs=66.5
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhc
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQ 300 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~ 300 (682)
|...+-.||++++++.-- .+.+++.--|--... ++.||+|.-|...+-++.+ ++++.-.++.+.+-..|.
T Consensus 121 N~LiRasALRvlSsIRvp-------~IaPI~llAIk~~~~--D~s~yVRk~AA~AIpKLYs-Ld~e~k~qL~e~I~~LLa 190 (968)
T KOG1060|consen 121 NQLIRASALRVLSSIRVP-------MIAPIMLLAIKKAVT--DPSPYVRKTAAHAIPKLYS-LDPEQKDQLEEVIKKLLA 190 (968)
T ss_pred cHHHHHHHHHHHHhcchh-------hHHHHHHHHHHHHhc--CCcHHHHHHHHHhhHHHhc-CChhhHHHHHHHHHHHhc
Confidence 445566677766654322 244555545555555 7999999999999998877 555555578888888888
Q ss_pred cCCCCCCCCcchhHHHHHHHHHhhhc--CCCCCCh
Q 005697 301 MLDKGDTSCYPVRASAAGAIVGLLEN--DYMPPEW 333 (682)
Q Consensus 301 d~~~~~~~~~pVrv~Aa~AL~~~l~~--~~l~p~l 333 (682)
|.+ .-|--.|+.|....|.+ +.|-++-
T Consensus 191 D~s------plVvgsAv~AF~evCPerldLIHkny 219 (968)
T KOG1060|consen 191 DRS------PLVVGSAVMAFEEVCPERLDLIHKNY 219 (968)
T ss_pred CCC------CcchhHHHHHHHHhchhHHHHhhHHH
Confidence 887 55657888999888765 3444443
No 129
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=42.48 E-value=7.4e+02 Score=30.52 Aligned_cols=130 Identities=18% Similarity=0.157 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhc-C----CCCC--ChHHHHHHHHHhhcccchhhhHHHHHHH
Q 005697 287 ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN-D----YMPP--EWYPLLQVIVGRIGYEDEENSILFELLS 359 (682)
Q Consensus 287 ~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~-~----~l~p--~l~~llq~Ll~~L~~e~~e~d~l~~~L~ 359 (682)
....+.+.++..|++++ .+=+...||+||..+++. + .+.- -+|-++++|+. +.--+ =.|-.+++|+
T Consensus 208 pv~slvp~Lv~LL~~E~-----n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~-IeyiD-vAEQ~LqALE 280 (1051)
T KOG0168|consen 208 PVKSLVPVLVALLSHEH-----NFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLT-IEYID-VAEQSLQALE 280 (1051)
T ss_pred cHHHHHHHHHHHHhccc-----cHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhh-hhhhH-HHHHHHHHHH
Confidence 35677888889998876 377999999999999995 1 2222 35667777776 42221 2444566666
Q ss_pred HHHHHhhhhhhchHHHHHHHH--HHHHHHhcCCCCCCChhhHHhHHHHHHHHHHhhhhhchhhhhhhccCCccchhHhHH
Q 005697 360 SVVGAANENVADHIPYIVSSL--VAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAI 437 (682)
Q Consensus 360 ~iVe~~~e~i~P~a~~L~~~L--~~~f~k~~~~~~~~~~~~~~~~~~aLa~~~~~~~~~~~~~~~~~~~~d~~~~~~~a~ 437 (682)
.+-..-...|.. +..|+..| .+.|.-.+ ++ .||+-.+.|..+.-+|+. +-.|-.
T Consensus 281 ~iSR~H~~AiL~-AG~l~a~LsylDFFSi~a-----------QR--~AlaiaaN~Cksi~sd~f----------~~v~ea 336 (1051)
T KOG0168|consen 281 KISRRHPKAILQ-AGALSAVLSYLDFFSIHA-----------QR--VALAIAANCCKSIRSDEF----------HFVMEA 336 (1051)
T ss_pred HHHhhccHHHHh-cccHHHHHHHHHHHHHHH-----------HH--HHHHHHHHHHhcCCCccc----------hHHHHH
Confidence 654443333322 12232222 23332221 11 367777777766655541 112337
Q ss_pred HHHHHHHHHh
Q 005697 438 AKAFSALLQQ 447 (682)
Q Consensus 438 L~ti~tllq~ 447 (682)
+.+++++|++
T Consensus 337 lPlL~~lLs~ 346 (1051)
T KOG0168|consen 337 LPLLTPLLSY 346 (1051)
T ss_pred HHHHHHHHhh
Confidence 7777777753
No 130
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=42.47 E-value=3.4e+02 Score=33.43 Aligned_cols=124 Identities=16% Similarity=0.143 Sum_probs=78.4
Q ss_pred cccCCCCCcccHHHHHHHHHHhhhc-----CChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHH-HHHhhhcCCCCC
Q 005697 258 LYSVSVCLPYLVASANWILGELASC-----LPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGA-IVGLLENDYMPP 331 (682)
Q Consensus 258 ~l~~~s~~p~LrarA~~~l~~f~~~-----l~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~A-L~~~l~~~~l~p 331 (682)
.+. +++|-.|+||..++++-... +++.....+++-..+.+.|.. .-..++.+ ++.++-..++++
T Consensus 51 yl~--s~n~~~Rakai~llsqvl~~~p~d~L~k~EVs~Ll~fyq~rldd~~--------la~~~~l~~l~aL~~~~~~p~ 120 (1030)
T KOG1967|consen 51 YLT--SDNPEERAKAIELLSQVLSEFPKDLLQKKEVSVLLQFYQNRLDDSA--------LAKEAVLGGLKALILMSKLPD 120 (1030)
T ss_pred Hhc--CCCHHHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHHHHhHHHHhh--------hhHHHHHHHHHHHHHhhcCCc
Confidence 355 79999999999988876543 345666777777777777653 22344444 666666666665
Q ss_pred C-hHHHHHHHHHhhcccc-hhhhH--HHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHhcCCCCCC
Q 005697 332 E-WYPLLQVIVGRIGYED-EENSI--LFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEP 394 (682)
Q Consensus 332 ~-l~~llq~Ll~~L~~e~-~e~d~--l~~~L~~iVe~~~e~i~P~a~~L~~~L~~~f~k~~~~~~~~ 394 (682)
. +..++..+++....+. ...+. ..+.++.++.++-+.+..-.+++ +...|.+.+...-||
T Consensus 121 ~~ivsllkalfq~~~vqs~aq~~R~~~~~Il~~~l~~~~~~l~s~~~D~---~~~~f~~~~~GEKDP 184 (1030)
T KOG1967|consen 121 NFIVSLLKALFQEVQVQSLAQKERLLQYEILEWFLDYRLEFLKSLGPDF---LFTAFCKVVDGEKDP 184 (1030)
T ss_pred hHHHHHHHHHHHhcchHHHHHHHHhhHHHHHHHHHHHHHHHHhcccchH---HHHHHHHHhcCCCCc
Confidence 4 5666666666433332 22333 48889999999988877643333 444556655555443
No 131
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=39.98 E-value=2.8e+02 Score=24.97 Aligned_cols=57 Identities=26% Similarity=0.267 Sum_probs=45.9
Q ss_pred CCCcccHHHHHHHHHHhhhc--CChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhcC
Q 005697 263 VCLPYLVASANWILGELASC--LPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND 327 (682)
Q Consensus 263 s~~p~LrarA~~~l~~f~~~--l~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~ 327 (682)
+..+=+|+.|..++++++.. ++++.+..+++.+++...... . .-.|-.+|..+++..
T Consensus 18 s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~------~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 18 SSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQET------V--QRQALICLIVLCQSQ 76 (121)
T ss_pred CCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccch------h--HHHHHHHHHHHHHcc
Confidence 56678999999999999986 789999999999998887654 2 556777777777654
No 132
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=38.58 E-value=73 Score=27.82 Aligned_cols=60 Identities=10% Similarity=0.010 Sum_probs=45.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhHhhhHHHHHHHHHHHHHhccccccCcccCHHHHHHHHHHHHHH
Q 005697 18 LLRFKTGKRGLLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHV 84 (682)
Q Consensus 18 ~~~~K~kKw~~~~l~~l~~Ry~~~~~~f~p~il~~~l~~l~~~~~~~~~~~lsd~~i~~~~~fl~~~ 84 (682)
..-|..+.-|.+++..++.||++.....-|.+++.+.+.+.... .+-...+=++.=|...
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~-------~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPK-------KPLGTHYGAIVGLSAL 76 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHHHHH
Confidence 34599999999999999999999888888999999998887421 1334555555555544
No 133
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=37.06 E-value=1.1e+03 Score=31.00 Aligned_cols=358 Identities=12% Similarity=0.052 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhh-----HhhhHHHHHHHHHHHHHhccccccCccc-CHHHHHHHHHHHHHHhccCccccccc
Q 005697 22 KTGKRGLLIFSALVTRHRKF-----SDKLMPDIMNSVLQIVKYSANISKLDFL-QERIISLAFDVISHVLETGPGWRLVS 95 (682)
Q Consensus 22 K~kKw~~~~l~~l~~Ry~~~-----~~~f~p~il~~~l~~l~~~~~~~~~~~l-sd~~i~~~~~fl~~~v~~~~~~~ll~ 95 (682)
+.-+-+-++++++..|+.+. +.-....|++-.|..+.. .+|. ++.++...-..|-+-++.+..---++
T Consensus 574 ~a~~i~~~fl~~fL~rc~s~~~e~d~r~LfeNfvqDLLs~ln~------PEWPatE~ILs~Lg~~Lv~~~s~ks~~~sir 647 (1692)
T KOG1020|consen 574 FAFRIANHFLTTFLERCFSKQGEEDYRILFENFVQDLLSALNL------PEWPATELILSLLGKLLVHNFSNKSVDVSIR 647 (1692)
T ss_pred HHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHccC------CcCccHHHHHHHHHHHHHHHhccchHHHHHH
Q ss_pred ccHHHHHHHHhhccccCChhh--------------hhhhhhCHHHHHHhcCCCchhhhccccccccchhHHHHHHHHHHh
Q 005697 96 PHFSVLLDKAIFPALVLNEKD--------------ISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVIS 161 (682)
Q Consensus 96 p~l~~Li~~vIfP~l~~teeD--------------~Elwe~DP~EYIr~~~d~~~~~~~~~~ed~~S~R~aA~~lL~~L~ 161 (682)
.---+++..+.=.......+- -+.|+++|-....+.+- |+..--..-.++...++
T Consensus 648 ~asLdlLG~IaarLrkd~v~s~l~~g~v~~~~~~~s~~~~~~k~~~l~~~Ll-----------dfl~~~~~~~~~~~v~~ 716 (1692)
T KOG1020|consen 648 TASLDLLGTIAARLRKDAVLSKLEQGSVDRELDQDSEEKHNIKLIVLQKTLL-----------DFLKSNTEETALSEVYA 716 (1692)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhcccccccchhhhhHHHHH-----------HHHHHhhhccchhhHHH
Q ss_pred hcCCCCCCCCCCCcccccccccccccccccccchhhHHHHHHHHhcCCCCCCCCCccccchhhHHHHHHHHHHHHHHHhh
Q 005697 162 VSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLRE 241 (682)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~kr~k~~~~k~~~~~~~l~~ili~~~L~~~~~~~~~~~~~~~~~~~kegaL~~lg~la~~l~~ 241 (682)
-++. +.+..+.. .++.+.++.....-..+. ....|+.-+-++.-+-.....++-
T Consensus 717 ~~fy-----------i~~w~~d~----------~le~~~~~~~~kd~~s~~-----~~~~~~~~el~~~~v~~~~n~~K~ 770 (1692)
T KOG1020|consen 717 CHFY-----------IAQWYRDT----------RLETILIMEENKDVDSNE-----GTHHWFSFELAYEKVITVENELKY 770 (1692)
T ss_pred hhHH-----------HHhHHHHH----------HHHHHHHHHhccCccccc-----cchhHHHHHHHHHHHhhhHHHHHH
Q ss_pred hcchhHHHHHHH---hhhhcccCCCCCcccHHHHHHHHHHhhhcCC-hhhHHHHHHHHHHhhccCCCCCCCCcchhHHHH
Q 005697 242 QKSEFTANLVRS---RVLPLYSVSVCLPYLVASANWILGELASCLP-EDISADVYSSLLKALQMLDKGDTSCYPVRASAA 317 (682)
Q Consensus 242 ~~~~~le~fL~~---~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~-~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa 317 (682)
++..+-.. +-.|... ..-..+..|+|..-..+...+ .+.+..++..++..|..+. ..||..|-
T Consensus 771 ----~~~~Ik~~~~~~~~~~~~---s~~~d~~~a~li~~~la~~r~f~~sfD~yLk~Il~~l~e~~------ialRtkAl 837 (1692)
T KOG1020|consen 771 ----ILSKIKDKEKSGRGPKLN---SRFADDDDAKLIVFYLAHARSFSQSFDPYLKLILSVLGENA------IALRTKAL 837 (1692)
T ss_pred ----HHHHhcchhhhccCcCCC---CccccchhHHHHHHHHHhhhHHHHhhHHHHHHHHHHhcCch------HHHHHHHH
Q ss_pred HHHHHhhhcCCCCCChHHHHHHHHHhhcccc-hhhhHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHhcCCCCCCCh
Q 005697 318 GAIVGLLENDYMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWP 396 (682)
Q Consensus 318 ~AL~~~l~~~~l~p~l~~llq~Ll~~L~~e~-~e~d~l~~~L~~iVe~~~e~i~P~a~~L~~~L~~~f~k~~~~~~~~~~ 396 (682)
+||..+++.+...=--+.+-+..-+.+.... .--|.++..+.++|-...+-+-.|-.+|+..
T Consensus 838 KclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qyY~~i~er----------------- 900 (1692)
T KOG1020|consen 838 KCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQYYDQIIER----------------- 900 (1692)
T ss_pred HHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHHHHHHHhh-----------------
Q ss_pred hhHHhHHHHHHHHHHhhhhhchhhhhhhccCCccchhHhH---HHHHHHHHHHhhhhhcccccccccCCCcchHHhHHHH
Q 005697 397 QVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAA---IAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSML 473 (682)
Q Consensus 397 ~~~~~~~~aLa~~~~~~~~~~~~~~~~~~~~d~~~~~~~a---~L~ti~tllq~~~~~~~~e~~~s~~~~~~~~~~le~~ 473 (682)
.-+.|.++ +++.+..+- ...++.+.+. ++
T Consensus 901 --------------------------------IlDtgvsVRKRvIKIlrdic------------~e~pdf~~i~----~~ 932 (1692)
T KOG1020|consen 901 --------------------------------ILDTGVSVRKRVIKILRDIC------------EETPDFSKIV----DM 932 (1692)
T ss_pred --------------------------------cCCCchhHHHHHHHHHHHHH------------HhCCChhhHH----HH
Q ss_pred HHHHHhhcCchhH-HHhhhHHHHHHHHH
Q 005697 474 LRSIILSVSERNV-IEELKLSELLLVWA 500 (682)
Q Consensus 474 l~~vi~~i~~~~~-~l~~~~~~~l~e~~ 500 (682)
+..+++-+.|.+. |.+.-.+-|+.=|+
T Consensus 933 cakmlrRv~DEEg~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 933 CAKMLRRVNDEEGNIKKLVRETFLKLWF 960 (1692)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHhc
No 134
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.67 E-value=76 Score=37.34 Aligned_cols=91 Identities=18% Similarity=0.107 Sum_probs=62.4
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcC--C-------hhhHHHH
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCL--P-------EDISADV 291 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l--~-------~~~l~~i 291 (682)
+.+.+-.|+.++-+|++..+ +..-.-+.-...+. +.+-=+|..|..++..|++.. + ......+
T Consensus 211 D~~Vrt~A~eglL~L~eg~k------L~~~~Y~~A~~~ls--D~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~a 282 (823)
T KOG2259|consen 211 DFRVRTHAVEGLLALSEGFK------LSKACYSRAVKHLS--DDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAA 282 (823)
T ss_pred CcchHHHHHHHHHhhccccc------ccHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHH
Confidence 45556777777777777432 21222223333355 466678998987777777742 2 2367889
Q ss_pred HHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhh
Q 005697 292 YSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLE 325 (682)
Q Consensus 292 l~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~ 325 (682)
+..+...+.|-+ +.|||.||.+|+.|=.
T Consensus 283 F~~vC~~v~D~s------l~VRV~AaK~lG~~~~ 310 (823)
T KOG2259|consen 283 FSSVCRAVRDRS------LSVRVEAAKALGEFEQ 310 (823)
T ss_pred HHHHHHHHhcCc------eeeeehHHHHhchHHH
Confidence 999999999987 9999999999997744
No 135
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=32.95 E-value=2.9e+02 Score=29.46 Aligned_cols=117 Identities=15% Similarity=0.186 Sum_probs=60.7
Q ss_pred CCCcccHHHHHHHHHHhhhcCC---h----hhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhcCCCCCCh--
Q 005697 263 VCLPYLVASANWILGELASCLP---E----DISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEW-- 333 (682)
Q Consensus 263 s~~p~LrarA~~~l~~f~~~l~---~----~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~~l~p~l-- 333 (682)
.+..+.+-.|+.+++.+...-+ . +.+..+++.+-+.++.++ ..++-.|+.+|+.++..+..+...
T Consensus 116 ~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~------~~~~~~av~~L~~LL~~~~~R~~f~~ 189 (312)
T PF03224_consen 116 RNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSD------SELQYIAVQCLQNLLRSKEYRQVFWK 189 (312)
T ss_dssp -SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHH------H---HHHHHHHHHHHTSHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCC------cchHHHHHHHHHHHhCcchhHHHHHh
Confidence 6789999999999999977522 2 234444444444333343 667788999999999874211111
Q ss_pred HHHHHHHHHhh------cccchhhhHHHHHHHHH-HHHhhhhhhchH--HHHHHHHHHHHHH
Q 005697 334 YPLLQVIVGRI------GYEDEENSILFELLSSV-VGAANENVADHI--PYIVSSLVAAISK 386 (682)
Q Consensus 334 ~~llq~Ll~~L------~~e~~e~d~l~~~L~~i-Ve~~~e~i~P~a--~~L~~~L~~~f~k 386 (682)
...++.++..+ .+.. .....-+++-.+ .-.|.+++.... ..+++.|+...-.
T Consensus 190 ~~~v~~l~~iL~~~~~~~~~~-~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~ 250 (312)
T PF03224_consen 190 SNGVSPLFDILRKQATNSNSS-GIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKD 250 (312)
T ss_dssp HHHHHHHHHHHH----------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHhhcccCCCC-chhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHh
Confidence 33344444433 1221 333344555544 455655544422 2266666666533
No 136
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=32.86 E-value=2.1e+02 Score=34.05 Aligned_cols=72 Identities=17% Similarity=0.221 Sum_probs=52.4
Q ss_pred HHHHHhhhhcccC--CCCCcccHHHHHHHHHHhhhcCChhh-HHHHHHHHHHh-hccCCCCCCCCcchhHHHHHHHHHhh
Q 005697 249 NLVRSRVLPLYSV--SVCLPYLVASANWILGELASCLPEDI-SADVYSSLLKA-LQMLDKGDTSCYPVRASAAGAIVGLL 324 (682)
Q Consensus 249 ~fL~~~VlP~l~~--~s~~p~LrarA~~~l~~f~~~l~~~~-l~~il~~ll~~-L~d~~~~~~~~~pVrv~Aa~AL~~~l 324 (682)
+.+.++|+|.+-. .+....++.+++..+..+++.+|-.. -..+++.+.+. ++..+ ++||+.+..|++.++
T Consensus 384 e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~------~~vkvn~L~c~~~l~ 457 (700)
T KOG2137|consen 384 EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTN------LYVKVNVLPCLAGLI 457 (700)
T ss_pred HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccc------hHHHHHHHHHHHHHH
Confidence 4556677887653 25788999999999999999887433 33444554433 33444 999999999999999
Q ss_pred hc
Q 005697 325 EN 326 (682)
Q Consensus 325 ~~ 326 (682)
+.
T Consensus 458 q~ 459 (700)
T KOG2137|consen 458 QR 459 (700)
T ss_pred HH
Confidence 64
No 137
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.38 E-value=1e+03 Score=29.13 Aligned_cols=99 Identities=20% Similarity=0.122 Sum_probs=61.3
Q ss_pred HHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhcCCCCC
Q 005697 252 RSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPP 331 (682)
Q Consensus 252 ~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~~l~p 331 (682)
+..|+-.+. .+.+-+|.||..+.-.. .+.+++..+.+.++.-|...+ --+|..-+.-|..+.+ .+.|
T Consensus 352 r~tIleCL~--DpD~SIkrralELs~~l---vn~~Nv~~mv~eLl~fL~~~d------~~~k~~~as~I~~laE--kfaP 418 (866)
T KOG1062|consen 352 RSTILECLK--DPDVSIKRRALELSYAL---VNESNVRVMVKELLEFLESSD------EDFKADIASKIAELAE--KFAP 418 (866)
T ss_pred HHHHHHHhc--CCcHHHHHHHHHHHHHH---hccccHHHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHH--hcCC
Confidence 445788888 79999999999887665 457888888888888887665 3466666666655555 3333
Q ss_pred C---hHHHHHHHHHhhcccchhhhHHHHHHHHHHHHh
Q 005697 332 E---WYPLLQVIVGRIGYEDEENSILFELLSSVVGAA 365 (682)
Q Consensus 332 ~---l~~llq~Ll~~L~~e~~e~d~l~~~L~~iVe~~ 365 (682)
. --.+|-+.|+.-++-. ++.+...+.+++...
T Consensus 419 ~k~W~idtml~Vl~~aG~~V--~~dv~~nll~LIa~~ 453 (866)
T KOG1062|consen 419 DKRWHIDTMLKVLKTAGDFV--NDDVVNNLLRLIANA 453 (866)
T ss_pred cchhHHHHHHHHHHhccccc--chhhHHHHHHHHhcC
Confidence 2 2334444444233333 344444444443333
No 138
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=32.08 E-value=7e+02 Score=27.18 Aligned_cols=117 Identities=11% Similarity=0.176 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhcC---CCCCChHHHHHHHHH-hhc-ccchhhhHHHHHHHHH
Q 005697 287 ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND---YMPPEWYPLLQVIVG-RIG-YEDEENSILFELLSSV 361 (682)
Q Consensus 287 ~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~---~l~p~l~~llq~Ll~-~L~-~e~~e~d~l~~~L~~i 361 (682)
.++.+|..+...+.+++ -..|-. ||..+-.++ .+.||+...+..-+. .+. +- .-...+++++..+
T Consensus 175 Elq~yf~~It~a~~~~~------~~~r~~---aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~nl-~~L~~lm~~v~AL 244 (343)
T cd08050 175 ELQLYFEEITEALVGSN------EEKRRE---ALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQNL-ALLIYLMRMVRAL 244 (343)
T ss_pred HHHHHHHHHHHHHhCCC------HHHHHH---HHHHhccCCCchhhhhHHHHHHHHHHHhhhcccH-HHHHHHHHHHHHH
Confidence 45667777777776654 344444 455544444 455555554433333 111 11 1345566666777
Q ss_pred HHHhhhhhhchHHHHHHHHHHHHHH-hcCCCC---CCChhhHHhHHHHHHHHHHhhh
Q 005697 362 VGAANENVADHIPYIVSSLVAAISK-HMHPSS---EPWPQVVERGFAALALMAQSWE 414 (682)
Q Consensus 362 Ve~~~e~i~P~a~~L~~~L~~~f~k-~~~~~~---~~~~~~~~~~~~aLa~~~~~~~ 414 (682)
+.+-.=.+.||+.+|++.+..+++. .+...+ +.| .+++.+-..|+.+..-.+
T Consensus 245 l~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~-~LRd~AA~ll~~i~~~f~ 300 (343)
T cd08050 245 LDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHW-ALRDYAARLLAQICRKFS 300 (343)
T ss_pred hcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHH-HHHHHHHHHHHHHHHHcC
Confidence 7777777999999999999877654 222211 223 455555555555555443
No 139
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.01 E-value=2.5e+02 Score=30.31 Aligned_cols=112 Identities=15% Similarity=0.137 Sum_probs=75.8
Q ss_pred HHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhc--CCCCCChHHHHHHHHHhhcccc-hhhhHHHHHHHHHHHHh
Q 005697 289 ADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN--DYMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAA 365 (682)
Q Consensus 289 ~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~--~~l~p~l~~llq~Ll~~L~~e~-~e~d~l~~~L~~iVe~~ 365 (682)
...+..++..|.+.+ -.+++.+-.-|..+... +.+-|.+..++-.+++.+.|.- .-+.....++..+...+
T Consensus 87 ~~al~~~l~~L~s~d------W~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~l 160 (334)
T KOG2933|consen 87 EAALKQALKKLSSDD------WEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSL 160 (334)
T ss_pred HHHHHHHHHHhchHH------HHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 346667777887776 67888888888888763 4677777777777777676653 23556677888999999
Q ss_pred hhhhhchHHHHHHHHHHHHHHhcCCCCCCChhhHHhHHHHHHHHHHhh
Q 005697 366 NENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSW 413 (682)
Q Consensus 366 ~e~i~P~a~~L~~~L~~~f~k~~~~~~~~~~~~~~~~~~aLa~~~~~~ 413 (682)
++.+.. ++-..+...+.|-..++- =+++++-++|.+|+...
T Consensus 161 n~~i~~---~ld~lv~~Ll~ka~~dnr----Fvreda~kAL~aMV~~v 201 (334)
T KOG2933|consen 161 NNSIDQ---ELDDLVTQLLHKASQDNR----FVREDAEKALVAMVNHV 201 (334)
T ss_pred HHHHHH---HHHHHHHHHHhhhcccch----HHHHHHHHHHHHHHhcc
Confidence 988776 222222333333332221 37888889998888765
No 140
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=31.99 E-value=1.9e+02 Score=27.82 Aligned_cols=68 Identities=9% Similarity=0.157 Sum_probs=45.7
Q ss_pred HHHHHHhhcccc--hhhhHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHhcCCCCCCChhhHHhHHHHHHHHHH
Q 005697 337 LQVIVGRIGYED--EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQ 411 (682)
Q Consensus 337 lq~Ll~~L~~e~--~e~d~l~~~L~~iVe~~~e~i~P~a~~L~~~L~~~f~k~~~~~~~~~~~~~~~~~~aLa~~~~ 411 (682)
+..|++.|.+.. .+-..+++++..+....+-...||.+++++.+.+.+... ++ ...|..|.-|+.+..
T Consensus 88 i~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~-~~------~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 88 INALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTC-PD------SLREFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhC-CH------HHHHHHHHHHHHHHH
Confidence 344444444433 245578888888888888889999999999988887432 21 356666666665543
No 141
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.90 E-value=3e+02 Score=33.06 Aligned_cols=110 Identities=15% Similarity=0.018 Sum_probs=66.1
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhc-CChhhHHHHHHHHHHh
Q 005697 220 RIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASC-LPEDISADVYSSLLKA 298 (682)
Q Consensus 220 ~~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~-l~~~~l~~il~~ll~~ 298 (682)
.+|..+--|++..|++...- +-..+..-+.-.+. +.+|+.|..|..++.++... -+...-..+...+...
T Consensus 98 ~np~iR~lAlrtm~~l~v~~-------i~ey~~~Pl~~~l~--d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~l 168 (734)
T KOG1061|consen 98 PNPLIRALALRTMGCLRVDK-------ITEYLCDPLLKCLK--DDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDL 168 (734)
T ss_pred CCHHHHHHHhhceeeEeehH-------HHHHHHHHHHHhcc--CCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHH
Confidence 36777777777777644221 11122222233456 78999999999999998774 2222223344455555
Q ss_pred hccCCCCCCCCcchhHHHHHHHHHhhhcC---CCCCChHHHHHHHHHhh
Q 005697 299 LQMLDKGDTSCYPVRASAAGAIVGLLEND---YMPPEWYPLLQVIVGRI 344 (682)
Q Consensus 299 L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~---~l~p~l~~llq~Ll~~L 344 (682)
+.|++ .-|-..|..||..+.+.+ ...-...+++..++..+
T Consensus 169 l~D~~------p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al 211 (734)
T KOG1061|consen 169 LSDSN------PMVVANALAALSEIHESHPSVNLLELNPQLINKLLEAL 211 (734)
T ss_pred hcCCC------chHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHH
Confidence 55776 556677888888877642 33334566777777744
No 142
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=31.35 E-value=1.3e+02 Score=26.20 Aligned_cols=56 Identities=20% Similarity=0.083 Sum_probs=46.0
Q ss_pred CCcccHHHHHHHHHHhhhcC---ChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHh
Q 005697 264 CLPYLVASANWILGELASCL---PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGL 323 (682)
Q Consensus 264 ~~p~LrarA~~~l~~f~~~l---~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~ 323 (682)
.|=-||-.|..+++...+.+ .+..-.++...+.+.+.|+++ +++.+..|..+|..|
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~----~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKK----PLGTHYGAIVGLSAL 76 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHHH
Confidence 45578999999998887764 356778899999999999884 588999999999887
No 143
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=29.25 E-value=8.8e+02 Score=27.46 Aligned_cols=71 Identities=21% Similarity=0.119 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhhhcCChhhHHHHHH-HHHHhhccCCCCCCCCcchhHHHHHHHHHhhhcCC---CCCChHHHHHHHHHhh
Q 005697 269 VASANWILGELASCLPEDISADVYS-SLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDY---MPPEWYPLLQVIVGRI 344 (682)
Q Consensus 269 rarA~~~l~~f~~~l~~~~l~~il~-~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~~---l~p~l~~llq~Ll~~L 344 (682)
|-+|...+|.+...++.+.+..+++ .++.+|.++. -.=|.-||..|..+..+.. -.+....+...|...|
T Consensus 104 Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~s------a~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L 177 (441)
T PF12054_consen 104 RIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPS------ATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEIL 177 (441)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchh------HHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHH
Confidence 3346688999999888888999998 5899998887 6779999999999988631 1111234555555545
Q ss_pred c
Q 005697 345 G 345 (682)
Q Consensus 345 ~ 345 (682)
.
T Consensus 178 ~ 178 (441)
T PF12054_consen 178 E 178 (441)
T ss_pred c
Confidence 4
No 144
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=28.54 E-value=4.9e+02 Score=30.30 Aligned_cols=133 Identities=12% Similarity=0.082 Sum_probs=75.3
Q ss_pred HHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCC--CCCcchhHHHHHHHHHhhhc
Q 005697 249 NLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGD--TSCYPVRASAAGAIVGLLEN 326 (682)
Q Consensus 249 ~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~d~~~~~--~~~~pVrv~Aa~AL~~~l~~ 326 (682)
+++.+.|.-.+. +..+-+|..|+..+..=+ -+.++++-.+..+.+.-.-+ ..++.+=++.-+-+..+++|
T Consensus 206 QlYy~~It~a~~--g~~~~~r~eAL~sL~TDs------GL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~N 277 (576)
T KOG2549|consen 206 QLYYKEITEACT--GSDEPLRQEALQSLETDS------GLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDN 277 (576)
T ss_pred HHHHHHHHHHHh--cCCHHHHHHHHHhhccCc------cHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcC
Confidence 455555666565 577888888886554322 22223332222222211000 11366667777778888888
Q ss_pred C--CCCCChHHHHHHHHHhhcc-------cchhh-----hHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHhcCCCC
Q 005697 327 D--YMPPEWYPLLQVIVGRIGY-------EDEEN-----SILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSS 392 (682)
Q Consensus 327 ~--~l~p~l~~llq~Ll~~L~~-------e~~e~-----d~l~~~L~~iVe~~~e~i~P~a~~L~~~L~~~f~k~~~~~~ 392 (682)
+ .+.||+-.+|=.++.++-. +. |+ |....++..++.+|+..-.- |-+++.+++.|.+.++.
T Consensus 278 p~i~lepYlh~L~PSvlTCvVsk~l~~~p~~-dnhwaLRDfAA~ll~~i~k~f~~~y~~----L~~Rit~tl~k~l~D~~ 352 (576)
T KOG2549|consen 278 PNIFLEPYLHQLVPSVLTCVVSKNLCLRPEL-DNHWALRDFAARLLAQICKNFSTLYNN----LQPRITRTLSKALLDNK 352 (576)
T ss_pred CccchhhHHHHHhhHHHHhhhhhhccCCccc-cchHHHHHHHHHHHHHHHHhhhhHHHH----HHHHHHHHHHHHhcCCC
Confidence 6 6788888877777765521 21 22 22355666667766665332 66677777777666664
Q ss_pred CC
Q 005697 393 EP 394 (682)
Q Consensus 393 ~~ 394 (682)
.+
T Consensus 353 ~~ 354 (576)
T KOG2549|consen 353 KP 354 (576)
T ss_pred CC
Confidence 43
No 145
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=27.84 E-value=61 Score=22.58 Aligned_cols=28 Identities=29% Similarity=0.184 Sum_probs=22.4
Q ss_pred HHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhh
Q 005697 291 VYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLL 324 (682)
Q Consensus 291 il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l 324 (682)
.++.++++|..++ ..++-.|+.||.++.
T Consensus 13 ~i~~L~~ll~~~~------~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSED------EEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCC------HHHHHHHHHHHHHHc
Confidence 4667778887655 789999999999874
No 146
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.69 E-value=1.2e+03 Score=28.36 Aligned_cols=274 Identities=15% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhc--CC---hhhHHHHHHHH-HHhhccCCCCCCCCcchhHHHHHHHH
Q 005697 248 ANLVRSRVLPLYSVSVCLPYLVASANWILGELASC--LP---EDISADVYSSL-LKALQMLDKGDTSCYPVRASAAGAIV 321 (682)
Q Consensus 248 e~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~--l~---~~~l~~il~~l-l~~L~d~~~~~~~~~pVrv~Aa~AL~ 321 (682)
..+++.++.-.+. .+.--.-+.--.++|-|.++ .+ ++++-.+++.+ .++|+.++ .-||..||.-+-
T Consensus 128 ~d~iq~~~~haih--a~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~N------s~VrsnAa~lf~ 199 (1005)
T KOG1949|consen 128 NDCIQDFMFHAIH--APRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARN------SEVRSNAALLFV 199 (1005)
T ss_pred hhHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCc------hhhhhhHHHHHH
Q ss_pred HhhhcCCCCCChHHHHHHHHHhhcccc---hhhhHH----HHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHhcCCCCCC
Q 005697 322 GLLENDYMPPEWYPLLQVIVGRIGYED---EENSIL----FELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEP 394 (682)
Q Consensus 322 ~~l~~~~l~p~l~~llq~Ll~~L~~e~---~e~d~l----~~~L~~iVe~~~e~i~P~a~~L~~~L~~~f~k~~~~~~~~ 394 (682)
.+.. +..+. .+.|.+ ++.|+.+.+.--..+..-+..=+.+...-|+..+++..-.
T Consensus 200 ~~fP------------------~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~ 261 (1005)
T KOG1949|consen 200 EAFP------------------IRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILI 261 (1005)
T ss_pred Hhcc------------------CCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHH
Q ss_pred ChhhHHhHHHHHHHHHHhhhhhchhhhhhhccCCccchhHhHHHHHHHHHHHhhhhhcccccccccCCCcchHHhHHHHH
Q 005697 395 WPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLL 474 (682)
Q Consensus 395 ~~~~~~~~~~aLa~~~~~~~~~~~~~~~~~~~~d~~~~~~~a~L~ti~tllq~~~~~~~~e~~~s~~~~~~~~~~le~~l 474 (682)
.+...+++.+| -|...+-..++.+-+..++ ..|.+..-++..+
T Consensus 262 --~ll~kI~d~~a-------------------~dt~s~VR~svf~gl~~~l----------------~np~sh~~le~~L 304 (1005)
T KOG1949|consen 262 --DLLKKITDELA-------------------FDTSSDVRCSVFKGLPMIL----------------DNPLSHPLLEQLL 304 (1005)
T ss_pred --HHHHHHHHHhh-------------------hccchheehhHhcCcHHHH----------------cCccchhHHHHHH
Q ss_pred HHHHhhcCchhHHHhhhHHHHHHHHHHHH---------------hcccchhhhhhchHHHHHHHHHhhhccccccccccc
Q 005697 475 RSIILSVSERNVIEELKLSELLLVWADLI---------------GDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIVR 539 (682)
Q Consensus 475 ~~vi~~i~~~~~~l~~~~~~~l~e~~~li---------------~~W~~~e~~~~~~~~dyl~evi~l~~~~~L~Nfi~~ 539 (682)
+ .+++- ++.+....=-.+.+++ .+-+++--++....--.=-.+.+ -+..|++.
T Consensus 305 p-al~~~------l~D~se~VRvA~vd~ll~ik~vra~~f~~I~~~d~~l~~L~~d~~~v~rr~~~l-----i~~s~lP~ 372 (1005)
T KOG1949|consen 305 P-ALRYS------LHDNSEKVRVAFVDMLLKIKAVRAAKFWKICPMDHILVRLETDSRPVSRRLVSL-----IFNSFLPV 372 (1005)
T ss_pred H-hcchh------hhccchhHHHHHHHHHHHHHhhhhhhhhccccHHHHHHHHhccccHHHHHHHHH-----HHHhhcCC
Q ss_pred cCCCCCCCCCChhHHHHHHHHHHhhhhhcCchhHHHHhHhHHHHhhcccccccccccchhhHHHHHHHHHhhhhh
Q 005697 540 QMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRA 614 (682)
Q Consensus 540 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ac~~~~~ll~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~ 614 (682)
.+ ..+-.-++|.+++ +-++.+..|=|+..|. ...-+-...--++.-|+..+.+|+++
T Consensus 373 ~k--------~ee~~c~Rc~tlv----~~n~~A~~rf~~~l~~------~~~~~~~~~~hlI~~fln~~~~~~~~ 429 (1005)
T KOG1949|consen 373 NK--------PEEVWCERCVTLV----QMNHAAARRFYQYLHE------HTATNIAKLIHLIRHFLNACIQRAVR 429 (1005)
T ss_pred CC--------cHHHHHHHHHHHH----ccCHHHHHHHHHHhcc------cchhhHHHHHHHHHHHHHHHHHHHhc
No 147
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=26.40 E-value=1.2e+02 Score=32.98 Aligned_cols=92 Identities=20% Similarity=0.132 Sum_probs=63.8
Q ss_pred hhHHHHHHHHHHHHHHHhhhcchh------HHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcC-C---hhhHHHHH
Q 005697 223 KDYFGVLMAYGGLQEFLREQKSEF------TANLVRSRVLPLYSVSVCLPYLVASANWILGELASCL-P---EDISADVY 292 (682)
Q Consensus 223 ~~kegaL~~lg~la~~l~~~~~~~------le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l-~---~~~l~~il 292 (682)
-.+|-+..++|.++.--.. .+++ ++++| ..|..+..|--+.+.|-|+++.++.-- | -.++.+.+
T Consensus 172 ~V~eQavWALGNiAGDS~~-~RD~vL~~galeplL-----~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqal 245 (526)
T COG5064 172 DVREQAVWALGNIAGDSEG-CRDYVLQCGALEPLL-----GLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQAL 245 (526)
T ss_pred HHHHHHHHHhccccCCchh-HHHHHHhcCchHHHH-----HHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHH
Confidence 3488899999998754221 2333 34433 333321344456668999999998863 2 35788999
Q ss_pred HHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhc
Q 005697 293 SSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 326 (682)
Q Consensus 293 ~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~ 326 (682)
+.+.+.+-..| .-|-+.|+-||..+.+-
T Consensus 246 piL~KLiys~D------~evlvDA~WAiSYlsDg 273 (526)
T COG5064 246 PILAKLIYSRD------PEVLVDACWAISYLSDG 273 (526)
T ss_pred HHHHHHHhhcC------HHHHHHHHHHHHHhccC
Confidence 99999998777 56789999999988764
No 148
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=26.39 E-value=1.1e+03 Score=27.45 Aligned_cols=51 Identities=20% Similarity=0.129 Sum_probs=33.3
Q ss_pred CCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHH
Q 005697 263 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIV 321 (682)
Q Consensus 263 s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~ 321 (682)
...+++|..|+|.+.+++...+..... .+++-+.+... +.=||+.|..+|-
T Consensus 491 ~~~~~iR~~Av~Alr~~a~~~p~~v~~----~l~~i~~n~~e----~~EvRiaA~~~lm 541 (574)
T smart00638 491 PLSTFIRLAAILALRNLAKRDPRKVQE----VLLPIYLNRAE----PPEVRMAAVLVLM 541 (574)
T ss_pred CCCHHHHHHHHHHHHHHHHhCchHHHH----HHHHHHcCCCC----ChHHHHHHHHHHH
Confidence 456799999999999887754443222 22333344331 2569999998875
No 149
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.30 E-value=1e+03 Score=27.36 Aligned_cols=75 Identities=17% Similarity=0.050 Sum_probs=61.0
Q ss_pred CCCcccHHHHHHHHHHhhhcCCh---hhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhh---cCCCCCChHHH
Q 005697 263 VCLPYLVASANWILGELASCLPE---DISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLE---NDYMPPEWYPL 336 (682)
Q Consensus 263 s~~p~LrarA~~~l~~f~~~l~~---~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~---~~~l~p~l~~l 336 (682)
+|+.-.|+-||..++.-++..|. .+-..++.+++..|-|++ +.+|..+|..+|....+ +..+.+++.++
T Consensus 269 dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~-----~~~V~leam~~Lt~v~~~~~~~~l~~~~l~i 343 (533)
T KOG2032|consen 269 DPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDL-----NEEVQLEAMKCLTMVLEKASNDDLESYLLNI 343 (533)
T ss_pred CchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCC-----ccHHHHHHHHHHHHHHHhhhhcchhhhchhH
Confidence 67779999999999998886553 467888999999998887 48999999999998876 35778887777
Q ss_pred HHHHHH
Q 005697 337 LQVIVG 342 (682)
Q Consensus 337 lq~Ll~ 342 (682)
--.+-.
T Consensus 344 alrlR~ 349 (533)
T KOG2032|consen 344 ALRLRT 349 (533)
T ss_pred HHHHHH
Confidence 666655
No 150
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=26.09 E-value=3.5e+02 Score=34.45 Aligned_cols=112 Identities=16% Similarity=0.067 Sum_probs=77.6
Q ss_pred hhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChh-hHHHHHHHHHHhhc
Q 005697 222 QKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPED-ISADVYSSLLKALQ 300 (682)
Q Consensus 222 ~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~-~l~~il~~ll~~L~ 300 (682)
...|.+-|..|+-|..+..+.+. ..++..|+.-.|+ +..+.||+.=..-+.-.+-+.... .-+-+++.+.++|.
T Consensus 592 ~~Vkr~Lle~i~~LC~FFGk~ks---ND~iLshLiTfLN--DkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~lt 666 (1431)
T KOG1240|consen 592 PIVKRALLESIIPLCVFFGKEKS---NDVILSHLITFLN--DKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLT 666 (1431)
T ss_pred hHHHHHHHHHHHHHHHHhhhccc---ccchHHHHHHHhc--CccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhcc
Confidence 34577777777777777654322 3445556666688 678999986554444333333333 33446788889999
Q ss_pred cCCCCCCCCcchhHHHHHHHHHhhhcCCC-CCChHHHHHHHHHhh
Q 005697 301 MLDKGDTSCYPVRASAAGAIVGLLENDYM-PPEWYPLLQVIVGRI 344 (682)
Q Consensus 301 d~~~~~~~~~pVrv~Aa~AL~~~l~~~~l-~p~l~~llq~Ll~~L 344 (682)
|++ --|=+.|-.||..+|+...+ +|++..++|..+..|
T Consensus 667 D~E------E~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL 705 (1431)
T KOG1240|consen 667 DGE------EAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLL 705 (1431)
T ss_pred Ccc------hhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhhe
Confidence 988 56779999999999998755 788999999888844
No 151
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=26.05 E-value=3.5e+02 Score=26.56 Aligned_cols=79 Identities=20% Similarity=0.258 Sum_probs=57.7
Q ss_pred cchhHHHHHHHHHhhhcCCCCCChHHHHHHHHHhhcccchhhhHH-HHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHhc
Q 005697 310 YPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSIL-FELLSSVVGAANENVADHIPYIVSSLVAAISKHM 388 (682)
Q Consensus 310 ~pVrv~Aa~AL~~~l~~~~l~p~l~~llq~Ll~~L~~e~~e~d~l-~~~L~~iVe~~~e~i~P~a~~L~~~L~~~f~k~~ 388 (682)
+.+|=.|-.+|.++++...-.-.+..++..+...|..+. +...+ ...+.+++....+.+.+....++..+..++.+-.
T Consensus 41 LelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D~~-DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~ 119 (169)
T PF08623_consen 41 LELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKDEH-DIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKL 119 (169)
T ss_dssp GHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS-H-HHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCCcH-HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccC
Confidence 899999999999999975434458888999999887754 55555 5567788888888888888888888877775543
Q ss_pred C
Q 005697 389 H 389 (682)
Q Consensus 389 ~ 389 (682)
+
T Consensus 120 k 120 (169)
T PF08623_consen 120 K 120 (169)
T ss_dssp -
T ss_pred C
Confidence 3
No 152
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=25.93 E-value=90 Score=35.05 Aligned_cols=76 Identities=24% Similarity=0.021 Sum_probs=51.0
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhc
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQ 300 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~ 300 (682)
.++.+.+++.++|. +. .+-. ..+.+.++ +++|++|+.|+.++|.+...- ..+.+...+.
T Consensus 130 ~p~vR~aal~al~~---r~----~~~~-----~~L~~~L~--d~d~~Vra~A~raLG~l~~~~-------a~~~L~~al~ 188 (410)
T TIGR02270 130 EPPGRAIGLAALGA---HR----HDPG-----PALEAALT--HEDALVRAAALRALGELPRRL-------SESTLRLYLR 188 (410)
T ss_pred ChHHHHHHHHHHHh---hc----cChH-----HHHHHHhc--CCCHHHHHHHHHHHHhhcccc-------chHHHHHHHc
Confidence 45667777766664 11 1111 13445577 799999999999999987631 1122445578
Q ss_pred cCCCCCCCCcchhHHHHHHHHHh
Q 005697 301 MLDKGDTSCYPVRASAAGAIVGL 323 (682)
Q Consensus 301 d~~~~~~~~~pVrv~Aa~AL~~~ 323 (682)
+.+ ..||..|+.|+..+
T Consensus 189 d~~------~~VR~aA~~al~~l 205 (410)
T TIGR02270 189 DSD------PEVRFAALEAGLLA 205 (410)
T ss_pred CCC------HHHHHHHHHHHHHc
Confidence 887 89999999999644
No 153
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=25.92 E-value=7.9e+02 Score=25.82 Aligned_cols=100 Identities=17% Similarity=0.163 Sum_probs=61.5
Q ss_pred chhhHHHHHHHHHHHHHHHhhh--cchhHHHHHHHhhhhcccCC-C------------------------------CCcc
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQ--KSEFTANLVRSRVLPLYSVS-V------------------------------CLPY 267 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~--~~~~le~fL~~~VlP~l~~~-s------------------------------~~p~ 267 (682)
.|...+++-.+-.-+...+... ....++.+|..++-|.|... + ..+.
T Consensus 15 ~Wtt~~s~~ia~~il~~~~~~~~~~~~~~~~~L~~~lrPlf~k~~~~~~t~~gr~~l~P~~~~~~~~~~~~~~~WK~~~~ 94 (282)
T PF10521_consen 15 PWTTEESAQIATSILEQFLSLSESPESIIERILIDTLRPLFSKSKNPRITSSGRKGLRPKLGFSFDDDELQRQPWKSNPG 94 (282)
T ss_pred CCccHHHHHHHHHHHHHhhccccCcHHHHHHHHHHHHhHHhcCCCCcccccccccccCCCCcccccccccccCCcccCCc
Confidence 4655555544444444333111 12346788888888888741 0 0122
Q ss_pred cH-HHHHHHHHHhhhc-CChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhc
Q 005697 268 LV-ASANWILGELASC-LPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 326 (682)
Q Consensus 268 Lr-arA~~~l~~f~~~-l~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~ 326 (682)
++ .--+|++.+-.+. -=.+++.-+++.++..+.|.+ .++|..++..|..|+.+
T Consensus 95 ~~~~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~------~~~K~~G~~lL~~ll~~ 149 (282)
T PF10521_consen 95 LASHVLSWIVLSQLDRPWISQHWPLIIPPILNLLDDYS------PEIKIQGCQLLHHLLEK 149 (282)
T ss_pred ccHHHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCCC------HHHHHHHHHHHHHHHHh
Confidence 33 2235777621111 114577788999999998887 89999999999999985
No 154
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=25.82 E-value=1.4e+03 Score=28.83 Aligned_cols=77 Identities=23% Similarity=0.173 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhcCCCCCC-hHHHHHHHHHhhcccchhhhHHHHHHHHHHHH
Q 005697 286 DISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPE-WYPLLQVIVGRIGYEDEENSILFELLSSVVGA 364 (682)
Q Consensus 286 ~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~~l~p~-l~~llq~Ll~~L~~e~~e~d~l~~~L~~iVe~ 364 (682)
+.++.++..++.++.|.+ ..||=+||..+....... ++. .-+++...+. +-++.++...--.++-.+.|-
T Consensus 337 eivE~vie~Lls~l~d~d------t~VrWSaAKg~grvt~rl--p~~Lad~vi~svid-~~~p~e~~~aWHgacLaLAEL 407 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTD------TVVRWSAAKGLGRVTSRL--PPELADQVIGSVID-LFNPAEDDSAWHGACLALAEL 407 (1133)
T ss_pred HHHHHHHHHHHHhccCCc------chhhHHHHHHHHHHHccC--cHHHHHHHHHHHHH-hcCcCCchhHHHHHHHHHHHH
Confidence 456788888899999888 899999999999887642 222 2234444444 223321233344555556666
Q ss_pred hhhhhhc
Q 005697 365 ANENVAD 371 (682)
Q Consensus 365 ~~e~i~P 371 (682)
....+.+
T Consensus 408 A~rGlLl 414 (1133)
T KOG1943|consen 408 ALRGLLL 414 (1133)
T ss_pred HhcCCcc
Confidence 6655443
No 155
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=25.82 E-value=7.9e+02 Score=25.78 Aligned_cols=109 Identities=16% Similarity=0.081 Sum_probs=71.5
Q ss_pred chhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHh
Q 005697 244 SEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGL 323 (682)
Q Consensus 244 ~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~ 323 (682)
.+.+...+..+--..+. +..-|++.-+. .+++.+-|+.-.+++..++..|...- .=+|...-.-|..+
T Consensus 148 ~~~La~il~~ya~~~fr--~~~dfl~~v~~----~l~~~f~P~~~~~~l~~Ll~lL~n~~------~w~~~~~L~iL~~l 215 (262)
T PF14225_consen 148 LPNLARILSSYAKGRFR--DKDDFLSQVVS----YLREAFFPDHEFQILTFLLGLLENGP------PWLRRKTLQILKVL 215 (262)
T ss_pred CccHHHHHHHHHhcCCC--CHHHHHHHHHH----HHHHHhCchhHHHHHHHHHHHHhCCc------HHHHHHHHHHHHHH
Confidence 34466666666555554 44555554322 23333334455566666777776554 57999999999999
Q ss_pred hhc-CCCCCChHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhh
Q 005697 324 LEN-DYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAAN 366 (682)
Q Consensus 324 l~~-~~l~p~l~~llq~Ll~~L~~e~~e~d~l~~~L~~iVe~~~ 366 (682)
+.+ +.=+|+.+.++..+++.+..+ -.....++|+.+|..-+
T Consensus 216 l~~~d~~~~~~~dlispllrlL~t~--~~~eAL~VLd~~v~~s~ 257 (262)
T PF14225_consen 216 LPHVDMRSPHGADLISPLLRLLQTD--LWMEALEVLDEIVTRSG 257 (262)
T ss_pred hccccCCCCcchHHHHHHHHHhCCc--cHHHHHHHHHHHHhhcc
Confidence 987 445788899999999966554 46667778888776544
No 156
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.06 E-value=5.7e+02 Score=30.54 Aligned_cols=57 Identities=16% Similarity=-0.015 Sum_probs=41.0
Q ss_pred cHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhcCCCCC
Q 005697 268 LVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPP 331 (682)
Q Consensus 268 LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~~l~p 331 (682)
+|..|..-++.++- -.|..-...+.-++..++|+. -.||..|..||..+..|-.|..
T Consensus 389 VR~AAV~Sl~~La~-ssP~FA~~aldfLvDMfNDE~------~~VRL~ai~aL~~Is~~l~i~e 445 (823)
T KOG2259|consen 389 VRRAAVASLCSLAT-SSPGFAVRALDFLVDMFNDEI------EVVRLKAIFALTMISVHLAIRE 445 (823)
T ss_pred HHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHhccHH------HHHHHHHHHHHHHHHHHheecH
Confidence 34444444444432 356677788889999999987 7899999999999988754443
No 157
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=24.92 E-value=3.3e+02 Score=31.22 Aligned_cols=131 Identities=15% Similarity=0.169 Sum_probs=0.0
Q ss_pred cccchhhHHHHHHHHHHHHHHHhhh----cchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhc--C---ChhhH
Q 005697 218 HSRIQKDYFGVLMAYGGLQEFLREQ----KSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASC--L---PEDIS 288 (682)
Q Consensus 218 ~~~~~~~kegaL~~lg~la~~l~~~----~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~--l---~~~~l 288 (682)
...+-|.++-+.+++|.+...+.-- ....++.=..+.+--... ...--+|=.||.++|.+-+. + +...-
T Consensus 494 ~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~--~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA 571 (728)
T KOG4535|consen 494 SADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLT--EAAMKVRWNACYAMGNLFKNPALPLQTAPWA 571 (728)
T ss_pred hhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceec--ccccccchHHHHHHHHhhcCccccccCCCch
Q ss_pred HHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhcCCCCCChHHHHHHHHHhhcccchhhhHHHH
Q 005697 289 ADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFE 356 (682)
Q Consensus 289 ~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~~l~p~l~~llq~Ll~~L~~e~~e~d~l~~ 356 (682)
..+|+.++..+.+-. ..-||+.||.||..--.-+....+.+-....++.+|-... +...+..
T Consensus 572 ~~~F~~L~~Lv~~~~-----NFKVRi~AA~aL~vp~~re~~~d~~~Lsw~~lv~aLi~s~-~~v~f~e 633 (728)
T KOG4535|consen 572 SQAFNALTSLVTSCK-----NFKVRIRAAAALSVPGKREQYGDQYALSWNALVTALQKSE-DTIDFLE 633 (728)
T ss_pred HHHHHHHHHHHHHhc-----cceEeehhhhhhcCCCCcccchhHHhHHHHHHHHHHHHHH-HHHHHHH
No 158
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=24.81 E-value=4.1e+02 Score=31.85 Aligned_cols=95 Identities=18% Similarity=0.054 Sum_probs=67.9
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchh-H------HHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhc--CChhhHHHH
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEF-T------ANLVRSRVLPLYSVSVCLPYLVASANWILGELASC--LPEDISADV 291 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~-l------e~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~--l~~~~l~~i 291 (682)
..-.+-+.+-+.|.+.....+ .++ + -+-|...+...|+ +.+||-|..|..++.+.... .-+..-.++
T Consensus 312 s~tlRc~~~EicaN~V~~~~~--d~qm~e~~~~~~~~Lv~ll~ERl~--D~~py~RtKalqv~~kifdl~sk~~~~r~ev 387 (1128)
T COG5098 312 SFTLRCCFLEICANLVEHFKK--DGQMVEHYKQKLNDLVGLLVERLS--DTYPYTRTKALQVLEKIFDLNSKTVGRRHEV 387 (1128)
T ss_pred chhHHHHHHHHHHHHHHHHhc--chhhHhhHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHhCcccccchHHHH
Confidence 455566667777776665543 221 1 1333444555677 68999999999999888764 235567889
Q ss_pred HHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhh
Q 005697 292 YSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLE 325 (682)
Q Consensus 292 l~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~ 325 (682)
...+.++++|.. ..||--|..-+..++-
T Consensus 388 ~~lv~r~lqDrs------s~VRrnaikl~SkLL~ 415 (1128)
T COG5098 388 IRLVGRRLQDRS------SVVRRNAIKLCSKLLM 415 (1128)
T ss_pred HHHHHHHhhhhh------HHHHHHHHHHHHHHHh
Confidence 999999999987 8999999988877754
No 159
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=24.55 E-value=4.3e+02 Score=28.12 Aligned_cols=47 Identities=32% Similarity=0.172 Sum_probs=25.3
Q ss_pred CCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHH
Q 005697 263 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVG 322 (682)
Q Consensus 263 s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~ 322 (682)
++.+.+|.+|.+.++.+.. ...++.+.+.+.|.+ ..||-.|+.||..
T Consensus 54 ~~~~~vr~~aa~~l~~~~~-------~~av~~l~~~l~d~~------~~vr~~a~~aLg~ 100 (335)
T COG1413 54 DEDLLVRLSAAVALGELGS-------EEAVPLLRELLSDED------PRVRDAAADALGE 100 (335)
T ss_pred CCCHHHHHHHHHHHhhhch-------HHHHHHHHHHhcCCC------HHHHHHHHHHHHc
Confidence 3455666666665554432 234455555555555 5666666665554
No 160
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.90 E-value=1.2e+03 Score=27.03 Aligned_cols=93 Identities=14% Similarity=0.106 Sum_probs=66.4
Q ss_pred hhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhc--CCCCCChHHHHHHHHHhhcccchhhhHH---HHHHH
Q 005697 285 EDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN--DYMPPEWYPLLQVIVGRIGYEDEENSIL---FELLS 359 (682)
Q Consensus 285 ~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~--~~l~p~l~~llq~Ll~~L~~e~~e~d~l---~~~L~ 359 (682)
...+..++..+.+...||+ --+|-.|++.|.+...- +..+.|-+.++..+...|-... ..+.. +.+|.
T Consensus 253 ~~lL~s~~~~la~ka~dp~------a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~-~~~V~leam~~Lt 325 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKATDPS------AKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDL-NEEVQLEAMKCLT 325 (533)
T ss_pred cccHHHHHHHHHHhccCch------hHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCC-ccHHHHHHHHHHH
Confidence 4678899999999999998 68999999999988764 3555566666666666554443 33444 44444
Q ss_pred HHHHHhh-hhhhchHHHHHHHHHHHH
Q 005697 360 SVVGAAN-ENVADHIPYIVSSLVAAI 384 (682)
Q Consensus 360 ~iVe~~~-e~i~P~a~~L~~~L~~~f 384 (682)
.+++... .++.+|...++-.+.+.|
T Consensus 326 ~v~~~~~~~~l~~~~l~ialrlR~l~ 351 (533)
T KOG2032|consen 326 MVLEKASNDDLESYLLNIALRLRTLF 351 (533)
T ss_pred HHHHhhhhcchhhhchhHHHHHHHHH
Confidence 5555544 458999999999988877
No 161
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=23.72 E-value=1.7e+02 Score=35.85 Aligned_cols=87 Identities=20% Similarity=0.270 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhc--CCCCCChHHHHHHHHHhhcccchhh------hHHHHHH
Q 005697 287 ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN--DYMPPEWYPLLQVIVGRIGYEDEEN------SILFELL 358 (682)
Q Consensus 287 ~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~--~~l~p~l~~llq~Ll~~L~~e~~e~------d~l~~~L 358 (682)
.+..+++.++++|..+| +.||+++-..|..++.. ..+.-|+..++-.++. |+..- ++ +...++|
T Consensus 906 ~~~~LlPLLLq~Ls~~D------~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLs-ls~~~-~n~~~~VR~~ALqcL 977 (1030)
T KOG1967|consen 906 QFPMLLPLLLQALSMPD------VIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLS-LSSDN-DNNMMVVREDALQCL 977 (1030)
T ss_pred chhhHHHHHHHhcCCCc------cchhhhHhhhhhHHHHhccccchHHHhHHHHHHHh-cCCCC-CcchhHHHHHHHHHH
Confidence 56788999999999999 89999999999998763 4666788888888888 66543 32 1234555
Q ss_pred HHHHHHhh-hhhhchHHHHHHHHH
Q 005697 359 SSVVGAAN-ENVADHIPYIVSSLV 381 (682)
Q Consensus 359 ~~iVe~~~-e~i~P~a~~L~~~L~ 381 (682)
..+.+... ..+.||-+++.+.|.
T Consensus 978 ~aL~~~~P~~~l~~fr~~Vl~al~ 1001 (1030)
T KOG1967|consen 978 NALTRRLPTKSLLSFRPLVLRALI 1001 (1030)
T ss_pred HHHhccCCCcccccccHHHHHHhh
Confidence 55555333 346777777766543
No 162
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=23.68 E-value=1.6e+02 Score=31.72 Aligned_cols=106 Identities=14% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHhhhHHHHHHHHHHHHHhccccccCcccCHHHHHHHHHHHHHHhccCccccc-------
Q 005697 21 FKTGKRGLLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRL------- 93 (682)
Q Consensus 21 ~K~kKw~~~~l~~l~~Ry~~~~~~f~p~il~~~l~~l~~~~~~~~~~~lsd~~i~~~~~fl~~~v~~~~~~~l------- 93 (682)
|+.++.|+..+.+++.+.+.. +...++..+|+.+....-..+.......-..+.--.+..++..+..+..
T Consensus 220 ~~vR~~A~~~l~~l~~~~~~~---l~~~li~~l~~~l~~~~~~~~~s~~~~~~~~~~~~v~~ai~~~~~~~~~~~~~~~~ 296 (339)
T PF12074_consen 220 WKVRRAALSALKKLYASNPEL---LSKSLISGLWKWLSSSETGDKESSAENSSDKNLSPVLSAICLAPADLSISDGSSAD 296 (339)
T ss_pred HHHHHHHHHHHHHHHHhChHH---HHHHHHHHHHHHHHhccccccccccccccccccccchHHHHhhhHhhhccccchhH
Q ss_pred ccccHHHHHHHHhhccccCChhhhhhhhh-------CHHHHHHhcCC
Q 005697 94 VSPHFSVLLDKAIFPALVLNEKDISEWEE-------DADEYIRKNFP 133 (682)
Q Consensus 94 l~p~l~~Li~~vIfP~l~~teeD~Elwe~-------DP~EYIr~~~d 133 (682)
.+..+.+++--.=-|.+... ..|.+ ||.++|+++.|
T Consensus 297 ~~~~~~~lLvla~hp~i~~~----~~Wi~L~~~~~lDP~~lv~~~~~ 339 (339)
T PF12074_consen 297 LESQLVSLLVLAHHPLIPRK----NLWIDLCQRAGLDPGDLVSENAD 339 (339)
T ss_pred HHHHHHHHHHHhCcHhhccc----chHHHHHHHcCCCHHHHHHhcCC
No 163
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=22.62 E-value=1.1e+03 Score=26.24 Aligned_cols=220 Identities=14% Similarity=0.144 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhc----C-ChhhHHHHHHHHHHh
Q 005697 224 DYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASC----L-PEDISADVYSSLLKA 298 (682)
Q Consensus 224 ~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~----l-~~~~l~~il~~ll~~ 298 (682)
.+++-+..++-+...+..+...|+.+|.. +|-|.+. +..+-...|..|++|..-.+ + ....-..++..++++
T Consensus 44 ~~~~~lq~~s~~k~~m~~k~~~Y~g~~~k-~i~p~l~--~~~se~l~~~Y~~lg~lvk~c~~llytksk~~cll~~~vd~ 120 (373)
T PF14911_consen 44 KRYQQLQTLSEGKSQMVTKLLEYFGDFEK-WIKPYLK--SKSSEGLQRIYRVLGILVKHCSPLLYTKSKSQCLLFRIVDC 120 (373)
T ss_pred HHhhHhHhhHHHHHHHHHHHHHHHHHHHH-HcCCccc--cCCHHHHHHHHHHHHHHHHhcchhheecCccccHHHHHHHH
Q ss_pred hccCCCCCCCCcchhHHHHHHHHHhhhc-------------CCCCCChHHHHHHHHHhhcccchhhhHHHHHHHHHHHHh
Q 005697 299 LQMLDKGDTSCYPVRASAAGAIVGLLEN-------------DYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAA 365 (682)
Q Consensus 299 L~d~~~~~~~~~pVrv~Aa~AL~~~l~~-------------~~l~p~l~~llq~Ll~~L~~e~~e~d~l~~~L~~iVe~~ 365 (682)
+-=| ..-...-++.-.--.|++..+.. .++.-.+..+++.++....... .+..... +..+...+
T Consensus 121 llLp-~~l~~~k~l~~~l~~ai~k~lpl~lqGl~~~~~~~dayL~~~l~~ii~~y~~~Fl~~~-~~~~~~~-l~~~~~~~ 197 (373)
T PF14911_consen 121 LLLP-TVLQQDKPLPPALLQAIRKSLPLFLQGLGRLSQRQDAYLNQQLRNIIQQYLPRFLPAS-PSKLVAR-LSTLLSAF 197 (373)
T ss_pred hccc-ccccCCCCCChHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHhHhccCC-Ccccccc-ccccccch
Q ss_pred hhhhhchHHHHHHHHHHHHHHhcCCCCCCChhhHHhHHHHHHHHHHhhhhhchhhhhhhccCCccchhHhH-HHHHHHHH
Q 005697 366 NENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAA-IAKAFSAL 444 (682)
Q Consensus 366 ~e~i~P~a~~L~~~L~~~f~k~~~~~~~~~~~~~~~~~~aLa~~~~~~~~~~~~~~~~~~~~d~~~~~~~a-~L~ti~tl 444 (682)
...-.++..-+++.+...|+..-...+.+ ..+ ++.-|.++
T Consensus 198 ~~~~~~l~~~il~~i~~~fl~~~~~~p~p---------------------------------------~l~~vL~fl~~L 238 (373)
T PF14911_consen 198 TPRNEELRKFILQVIRSNFLEFKGSAPPP---------------------------------------RLASVLAFLQQL 238 (373)
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCCCCCCC---------------------------------------cHHHHHHHHHHH
Q ss_pred HHhhhhhcccccccc--cCCCcchHHhHHHHHHHHHhh---cCchhHHHhhhHHHHHHHHHH
Q 005697 445 LQQAWLTHIQPLECE--VSAPPSCIDDSSMLLRSIILS---VSERNVIEELKLSELLLVWAD 501 (682)
Q Consensus 445 lq~~~~~~~~e~~~s--~~~~~~~~~~le~~l~~vi~~---i~~~~~~l~~~~~~~l~e~~~ 501 (682)
+ .. ..+....+-.++-.++++++| ++|..-. .....+++..+.+
T Consensus 239 l------------~~~~~~~~~~~~~~~~~~lp~lL~c~~~v~e~~~~-k~~a~e~l~~mv~ 287 (373)
T PF14911_consen 239 L------------KRLQRQNENQILTLLRLVLPSLLECLMLVNEEPQV-KKLATELLQYMVE 287 (373)
T ss_pred H------------HhcCcccchhHHHHHHHhhHHHHHHHhhcCCCcch-hHHHHHHHHHHHH
No 164
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=22.48 E-value=1.2e+02 Score=34.01 Aligned_cols=57 Identities=30% Similarity=0.156 Sum_probs=43.1
Q ss_pred HhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhh
Q 005697 253 SRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLE 325 (682)
Q Consensus 253 ~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~ 325 (682)
..+.+.+. +++|++|+.+...++.... ..++.+...|+|++ ..||..|+.+|..+-.
T Consensus 120 ~~L~~~L~--~~~p~vR~aal~al~~r~~--------~~~~~L~~~L~d~d------~~Vra~A~raLG~l~~ 176 (410)
T TIGR02270 120 PWLEPLLA--ASEPPGRAIGLAALGAHRH--------DPGPALEAALTHED------ALVRAAALRALGELPR 176 (410)
T ss_pred HHHHHHhc--CCChHHHHHHHHHHHhhcc--------ChHHHHHHHhcCCC------HHHHHHHHHHHHhhcc
Confidence 34556677 7899999988888877432 13456777788887 8999999999997654
No 165
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.80 E-value=4.6e+02 Score=29.23 Aligned_cols=108 Identities=22% Similarity=0.347 Sum_probs=75.9
Q ss_pred HHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhc--CCCCCChHHHHHHHHHhhcccc-hhhhHHHHHHHHHHHHhhhh-
Q 005697 293 SSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN--DYMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANEN- 368 (682)
Q Consensus 293 ~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~--~~l~p~l~~llq~Ll~~L~~e~-~e~d~l~~~L~~iVe~~~e~- 368 (682)
..++..+...+ .=||-.|-.-|+.++.+ +.+..+..++++.+...+..+. ..-+.+.++++.++.....+
T Consensus 61 keLl~qlkHhN------akvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~ 134 (393)
T KOG2149|consen 61 KELLSQLKHHN------AKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKED 134 (393)
T ss_pred HHHHhhhcCch------HhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhh
Confidence 34455556656 56888888888877765 3556677888888888666655 45666788888876555544
Q ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCChhhHHhHHHHHHHHHHhh
Q 005697 369 VADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSW 413 (682)
Q Consensus 369 i~P~a~~L~~~L~~~f~k~~~~~~~~~~~~~~~~~~aLa~~~~~~ 413 (682)
+.|+..-++..+..+..... |++.++.+..|..+...+
T Consensus 135 ~sp~~~l~~~yi~~AMThit-------~~i~~dslkfL~~Ll~~~ 172 (393)
T KOG2149|consen 135 QSPMVSLLMPYISSAMTHIT-------PEIQEDSLKFLSLLLERY 172 (393)
T ss_pred hcchHHHHHHHHHHHHhhcc-------HHHHHhhHHHHHHHHHHc
Confidence 68999999998877764442 578888888886665543
No 166
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=20.65 E-value=1.1e+03 Score=26.19 Aligned_cols=146 Identities=14% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHhhhcCCCCC----ChHHHHHHHHHhhcccc-hhhhHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHhcCCCCCC
Q 005697 320 IVGLLENDYMPP----EWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEP 394 (682)
Q Consensus 320 L~~~l~~~~l~p----~l~~llq~Ll~~L~~e~-~e~d~l~~~L~~iVe~~~e~i~P~a~~L~~~L~~~f~k~~~~~~~~ 394 (682)
+..|+......| .=...+..|+..+..++ .|-+.+-.+|-++..++...-. .|-..+.+.|.++..+...+
T Consensus 114 l~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~----~Ir~~i~~~~~~fi~e~~~~ 189 (409)
T PF01603_consen 114 LLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRS----FIRKSINNIFYRFIYETERH 189 (409)
T ss_dssp HHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHH----HHHHHHHHHHHHHHHTTS--
T ss_pred HHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHhcCcccc
Q ss_pred ChhhHHhHHHHHHHHHHhhhhhchhhhhhhccCCccchhHhHHHHHHHHHHHhhhhhcccccccccCCCcchHHhHHHHH
Q 005697 395 WPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLL 474 (682)
Q Consensus 395 ~~~~~~~~~~aLa~~~~~~~~~~~~~~~~~~~~d~~~~~~~a~L~ti~tllq~~~~~~~~e~~~s~~~~~~~~~~le~~l 474 (682)
.-+..+++.++++......--+++ --+.+.++| ..+-..+..-.+..++.
T Consensus 190 --~gI~elLeil~sii~gf~~plk~e----------------h~~fl~~vl------------lPLh~~~~~~~y~~~L~ 239 (409)
T PF01603_consen 190 --NGIAELLEILGSIINGFAVPLKEE----------------HKQFLRKVL------------LPLHKSPHLSSYHQQLS 239 (409)
T ss_dssp --STHHHHHHHHHHHHTT--SS--HH----------------HHHHHHHTT------------GGGGGSTGGGGTHHHHH
T ss_pred --cCHHHHHHHHHHHHhccCCCCcHH----------------HHHHHHHHH------------HHHhcCCcHHHHHHHHH
Q ss_pred HHHHhhcCchhHHHhhhHHHHHHHH
Q 005697 475 RSIILSVSERNVIEELKLSELLLVW 499 (682)
Q Consensus 475 ~~vi~~i~~~~~~l~~~~~~~l~e~ 499 (682)
+.+..|+..+..+...-+..++..|
T Consensus 240 ~~~~~f~~kdp~l~~~~i~~llk~W 264 (409)
T PF01603_consen 240 YCVVQFLEKDPSLAEPVIKGLLKHW 264 (409)
T ss_dssp HHHHHHHHH-GGGHHHHHHHHHHHS
T ss_pred HHHHHHHHhCchhHHHHHHHHHHhC
No 167
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=20.46 E-value=2e+02 Score=36.62 Aligned_cols=97 Identities=16% Similarity=0.149 Sum_probs=66.7
Q ss_pred CCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhc---CCCCCChHHHHHH
Q 005697 263 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN---DYMPPEWYPLLQV 339 (682)
Q Consensus 263 s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~---~~l~p~l~~llq~ 339 (682)
++++..|..|..+++.+......+....+++.++..+.+.+ -.+|-.++.-+-..+.. -.+.|+.+=++--
T Consensus 827 s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~------~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~p 900 (1549)
T KOG0392|consen 827 SIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLD------KFVRRQGADELIELLDAVLMVGLVPYNPLLVVP 900 (1549)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchh------hHhhhhhHHHHHHHHHHhhcccccccceeehhh
Confidence 78899999999999999988778889999999999998877 45555555555444443 3677777777777
Q ss_pred HHHhhcccchh--hhHHHHHHHHHHHHhh
Q 005697 340 IVGRIGYEDEE--NSILFELLSSVVGAAN 366 (682)
Q Consensus 340 Ll~~L~~e~~e--~d~l~~~L~~iVe~~~ 366 (682)
|+..++... | -+...++..+++-...
T Consensus 901 llr~msd~~-d~vR~aat~~fa~lip~~~ 928 (1549)
T KOG0392|consen 901 LLRRMSDQI-DSVREAATKVFAKLIPLLP 928 (1549)
T ss_pred hhcccccch-HHHHHHHHHHHHHHhcccc
Confidence 777444433 2 2233555555544333
No 168
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=20.41 E-value=4.6e+02 Score=37.19 Aligned_cols=80 Identities=14% Similarity=0.178 Sum_probs=55.7
Q ss_pred CCCCChHHHHHHHHHhhcccchhhhHH---HHHHHHHHHHhhhh-hhchHHHHHHHHHHHHHHhcCCCCCCChhhHHhHH
Q 005697 328 YMPPEWYPLLQVIVGRIGYEDEENSIL---FELLSSVVGAANEN-VADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGF 403 (682)
Q Consensus 328 ~l~p~l~~llq~Ll~~L~~e~~e~d~l---~~~L~~iVe~~~e~-i~P~a~~L~~~L~~~f~k~~~~~~~~~~~~~~~~~ 403 (682)
.+.||++.+|..|..+|... -+.+ +.+++-+|.+...+ +.|........+.+.+++++.+.++ .+.-+.++
T Consensus 714 ~Llpylp~LM~PLv~aLkgs---~~lvsQgLRtlelcvDnltPefL~~~mepv~~~lmqaLw~~l~~~~~--~s~s~~a~ 788 (3550)
T KOG0889|consen 714 SLLPYLPLLMKPLVFALKGS---PELVSQGLRTLELCVDNLTPEFLDPIMEPVRDDLMQALWSHLRPVPN--YSYSHRAL 788 (3550)
T ss_pred HhhhhhhhhhhHHHHHhcCC---HHHHHHHHhHHHHHHhcCChHhhhHHHHHHHHHHHHHHHHhccCCCC--chHHHHHH
Confidence 78899999999999977543 2334 44555556655444 6676677777888888888888753 25666777
Q ss_pred HHHHHHHHh
Q 005697 404 AALALMAQS 412 (682)
Q Consensus 404 ~aLa~~~~~ 412 (682)
..||.++..
T Consensus 789 rILGKlgG~ 797 (3550)
T KOG0889|consen 789 RILGKLGGR 797 (3550)
T ss_pred HHHHhhcCc
Confidence 777776664
Done!