Query 005697
Match_columns 682
No_of_seqs 263 out of 691
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 04:54:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005697.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005697hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wa5_C Importin alpha RE-expor 100.0 2.2E-46 7.6E-51 453.3 39.9 515 16-664 255-826 (960)
2 2x1g_F Cadmus; transport prote 99.8 7.7E-19 2.6E-23 212.3 33.9 298 26-391 311-644 (971)
3 4fdd_A Transportin-1; heat rep 99.8 6.3E-18 2.1E-22 201.5 41.3 325 20-415 228-561 (852)
4 2x19_B Importin-13; nuclear tr 99.8 4.6E-17 1.6E-21 196.3 37.5 323 25-416 302-654 (963)
5 3m1i_C Exportin-1; heat repeat 99.8 3.1E-17 1.1E-21 200.2 24.8 264 70-387 357-644 (1049)
6 2bpt_A Importin beta-1 subunit 99.6 2.1E-13 7.1E-18 161.2 33.9 314 19-414 236-588 (861)
7 1qgr_A Protein (importin beta 99.6 5.2E-13 1.8E-17 158.1 32.4 313 20-414 230-596 (876)
8 3ibv_A Exportin-T; karyopherin 99.2 4.5E-10 1.5E-14 135.9 25.2 288 70-413 345-683 (980)
9 4fdd_A Transportin-1; heat rep 99.2 4.1E-08 1.4E-12 116.8 41.0 309 20-414 187-515 (852)
10 1ibr_B P95, importin beta-1 su 99.1 2.4E-10 8.2E-15 124.7 12.6 206 20-300 230-461 (462)
11 1qgr_A Protein (importin beta 99.1 5E-08 1.7E-12 115.3 33.0 313 20-414 187-540 (876)
12 4hat_C Exportin-1; heat repeat 99.0 1E-08 3.5E-13 124.4 22.3 265 71-388 358-645 (1023)
13 2bpt_A Importin beta-1 subunit 98.9 2.7E-05 9.4E-10 91.6 44.2 178 220-414 343-532 (861)
14 1u6g_C TIP120 protein, CAND1; 98.6 1.3E-05 4.5E-10 99.0 30.6 149 256-415 440-602 (1230)
15 2qk1_A Protein STU2; STU2P, XM 98.5 1.3E-06 4.6E-11 89.0 15.7 182 220-416 28-225 (249)
16 3gjx_A Exportin-1; transport, 98.5 5.6E-06 1.9E-10 100.5 23.6 162 221-388 492-671 (1073)
17 2qk2_A LP04448P; mini spindles 98.4 6.8E-06 2.3E-10 82.6 16.2 177 220-415 27-209 (242)
18 1b3u_A Protein (protein phosph 98.3 6.5E-05 2.2E-09 84.1 22.7 171 221-414 255-434 (588)
19 1ibr_B P95, importin beta-1 su 98.2 7.8E-05 2.7E-09 80.7 20.4 114 219-344 339-460 (462)
20 2qk2_A LP04448P; mini spindles 97.8 0.00037 1.3E-08 69.7 16.5 144 221-376 70-219 (242)
21 3a6p_A Exportin-5; exportin-5, 97.8 0.0013 4.5E-08 81.2 24.6 289 47-384 350-680 (1204)
22 1u6g_C TIP120 protein, CAND1; 97.8 0.0003 1E-08 86.8 18.9 154 221-382 147-303 (1230)
23 1b3u_A Protein (protein phosph 97.8 0.0002 6.8E-09 80.1 14.5 169 220-408 414-584 (588)
24 2qk1_A Protein STU2; STU2P, XM 97.4 0.00058 2E-08 69.3 11.2 147 221-376 74-234 (249)
25 2x19_B Importin-13; nuclear tr 97.3 0.051 1.7E-06 65.0 27.4 139 263-414 460-602 (963)
26 1wa5_C Importin alpha RE-expor 97.3 0.085 2.9E-06 63.4 29.3 183 221-413 374-584 (960)
27 2jdq_A Importin alpha-1 subuni 97.3 0.0086 2.9E-07 64.4 18.3 138 221-366 247-393 (450)
28 2x1g_F Cadmus; transport prote 97.3 0.042 1.4E-06 65.9 26.2 113 264-385 476-594 (971)
29 1wa5_B Importin alpha subunit; 97.1 0.017 5.8E-07 64.3 18.8 174 221-406 312-505 (530)
30 2jdq_A Importin alpha-1 subuni 96.9 0.012 4.1E-07 63.3 15.1 98 221-326 289-391 (450)
31 4b8j_A Importin subunit alpha- 96.7 0.039 1.3E-06 61.2 18.0 138 221-367 299-447 (528)
32 1wa5_B Importin alpha subunit; 96.7 0.1 3.6E-06 57.8 21.3 177 221-413 270-459 (530)
33 4db8_A Armadillo-repeat protei 96.6 0.0062 2.1E-07 60.3 9.3 97 222-326 68-168 (252)
34 1w63_A Adapter-related protein 96.6 0.062 2.1E-06 61.4 18.9 127 222-366 327-454 (618)
35 4b8j_A Importin subunit alpha- 96.6 0.12 4E-06 57.3 20.6 178 221-413 257-445 (528)
36 2vgl_B AP-2 complex subunit be 96.5 0.023 7.8E-07 64.6 14.7 109 221-345 99-212 (591)
37 2vgl_A Adaptor protein complex 96.4 0.0085 2.9E-07 68.8 10.1 143 221-384 87-237 (621)
38 4db6_A Armadillo repeat protei 96.2 0.027 9.2E-07 54.0 11.3 172 221-409 25-207 (210)
39 4hxt_A De novo protein OR329; 96.0 0.21 7.3E-06 48.6 17.0 218 21-326 16-242 (252)
40 1w63_A Adapter-related protein 96.0 0.88 3E-05 51.8 24.2 90 221-326 83-172 (618)
41 2vgl_B AP-2 complex subunit be 96.0 0.086 2.9E-06 59.8 15.4 122 221-363 62-186 (591)
42 4hat_C Exportin-1; heat repeat 95.8 0.92 3.2E-05 55.0 24.5 143 264-414 465-621 (1023)
43 1xqr_A HSPBP1 protein; armadil 95.7 0.084 2.9E-06 54.8 12.8 97 222-326 139-239 (296)
44 3ibv_A Exportin-T; karyopherin 95.7 0.32 1.1E-05 58.8 19.4 178 268-481 459-652 (980)
45 4hxt_A De novo protein OR329; 95.3 0.076 2.6E-06 51.9 10.4 176 221-413 57-243 (252)
46 4db6_A Armadillo repeat protei 95.0 0.087 3E-06 50.4 9.7 97 221-326 67-168 (210)
47 4db8_A Armadillo-repeat protei 95.0 0.3 1E-05 47.9 13.6 175 222-410 26-208 (252)
48 3m1i_C Exportin-1; heat repeat 94.8 0.24 8.1E-06 60.1 14.9 153 249-414 450-621 (1049)
49 1xqr_A HSPBP1 protein; armadil 94.6 0.35 1.2E-05 50.1 13.5 141 254-412 85-239 (296)
50 3ltj_A Alpharep-4; protein eng 93.7 0.59 2E-05 44.3 12.3 79 221-325 27-105 (201)
51 3ltm_A Alpha-REP4; protein eng 93.5 0.53 1.8E-05 45.0 11.6 139 221-409 32-170 (211)
52 2vgl_A Adaptor protein complex 93.4 0.83 2.8E-05 52.2 14.9 106 221-342 124-235 (621)
53 3u0r_A Apoptosis inhibitor 5; 93.3 4.9 0.00017 44.1 19.6 91 264-365 40-131 (507)
54 1oyz_A Hypothetical protein YI 93.2 0.53 1.8E-05 47.2 11.5 100 221-346 104-203 (280)
55 3ltj_A Alpharep-4; protein eng 93.2 0.49 1.7E-05 44.9 10.6 79 221-325 58-136 (201)
56 3ltm_A Alpha-REP4; protein eng 92.8 0.45 1.5E-05 45.5 9.8 79 221-325 63-141 (211)
57 3gjx_A Exportin-1; transport, 92.1 7.6 0.00026 47.2 21.2 143 264-414 491-647 (1073)
58 1te4_A Conserved protein MTH18 91.8 0.2 6.7E-06 44.7 5.4 76 221-322 55-130 (131)
59 2z6g_A B-catenin; FULL-length, 91.7 10 0.00035 44.3 21.4 96 222-326 333-429 (780)
60 1te4_A Conserved protein MTH18 91.6 0.56 1.9E-05 41.6 8.2 67 255-344 47-113 (131)
61 3ul1_B Importin subunit alpha- 90.6 9.7 0.00033 41.8 18.9 179 221-411 114-303 (510)
62 3tpo_A Importin subunit alpha- 90.3 0.39 1.3E-05 53.4 7.2 94 221-326 306-407 (529)
63 1oyz_A Hypothetical protein YI 90.3 1.9 6.4E-05 43.1 11.6 54 257-325 30-83 (280)
64 2iw3_A Elongation factor 3A; a 90.1 0.85 2.9E-05 54.7 10.1 147 226-381 70-223 (986)
65 3tpo_A Importin subunit alpha- 89.9 2 6.8E-05 47.6 12.5 91 229-326 94-192 (529)
66 3tjz_B Coatomer subunit gamma; 89.5 1.6 5.6E-05 46.3 10.8 89 221-326 81-169 (355)
67 2iw3_A Elongation factor 3A; a 89.3 2.1 7.2E-05 51.4 12.6 133 270-417 70-210 (986)
68 3ul1_B Importin subunit alpha- 89.3 2.3 7.9E-05 46.9 12.4 73 247-326 93-173 (510)
69 1jdh_A Beta-catenin; beta-cate 86.8 8.7 0.0003 41.6 15.0 96 222-326 200-296 (529)
70 2db0_A 253AA long hypothetical 86.3 18 0.00061 34.9 14.4 73 263-345 155-227 (253)
71 3now_A UNC-45 protein, SD10334 82.7 3.7 0.00013 48.3 9.9 95 223-325 596-694 (810)
72 2z6h_A Catenin beta-1, beta-ca 82.4 6.1 0.00021 44.8 11.5 95 223-326 198-293 (644)
73 4ffb_C Protein STU2; tubulin f 81.4 9.6 0.00033 38.2 11.4 178 219-415 20-216 (278)
74 4ffb_C Protein STU2; tubulin f 80.8 16 0.00054 36.5 12.8 91 221-325 116-212 (278)
75 3b2a_A TON_1937, putative unch 79.0 35 0.0012 34.1 13.8 160 219-412 16-180 (265)
76 3tjz_B Coatomer subunit gamma; 77.2 4.2 0.00015 43.0 7.3 92 220-327 116-207 (355)
77 4gmo_A Putative uncharacterize 73.7 3.6 0.00012 47.3 6.2 58 259-326 43-106 (684)
78 3opb_A SWI5-dependent HO expre 73.2 14 0.0005 42.9 10.9 95 223-325 574-683 (778)
79 2fv2_A RCD1 required for cell 72.9 30 0.001 34.8 11.7 168 201-390 50-225 (268)
80 1xm9_A Plakophilin 1; armadill 71.7 14 0.00047 40.0 10.0 114 222-344 16-136 (457)
81 1jdh_A Beta-catenin; beta-cate 69.8 1.2E+02 0.0041 32.3 21.5 173 221-410 156-338 (529)
82 3now_A UNC-45 protein, SD10334 66.9 18 0.0006 42.6 10.0 95 221-326 303-409 (810)
83 3oc3_A Helicase MOT1, MOT1; re 65.4 1.5E+02 0.0052 33.4 16.1 200 147-388 188-399 (800)
84 4ady_A RPN2, 26S proteasome re 64.8 1.1E+02 0.0037 36.6 16.1 101 263-372 623-729 (963)
85 2z6h_A Catenin beta-1, beta-ca 64.5 1.8E+02 0.0062 32.4 23.5 178 221-410 153-335 (644)
86 3l9t_A Putative uncharacterize 61.3 33 0.0011 34.1 9.3 91 220-325 116-207 (240)
87 1w9c_A CRM1 protein, exportin 58.9 48 0.0016 34.4 10.4 79 333-411 71-151 (321)
88 3nmw_A APC variant protein; AR 56.4 23 0.00078 37.2 7.7 96 222-325 185-292 (354)
89 3b2a_A TON_1937, putative unch 56.4 73 0.0025 31.8 10.6 94 221-323 46-142 (265)
90 2db0_A 253AA long hypothetical 56.3 1.5E+02 0.005 28.7 14.1 164 221-411 45-210 (253)
91 2z6g_A B-catenin; FULL-length, 54.7 63 0.0021 37.5 11.9 138 256-412 121-264 (780)
92 3a6p_A Exportin-5; exportin-5, 53.5 87 0.003 38.4 13.3 76 310-385 546-635 (1204)
93 3nmw_A APC variant protein; AR 53.1 24 0.00084 37.0 7.3 96 222-326 232-335 (354)
94 3nmz_A APC variant protein; pr 47.7 39 0.0013 36.8 8.0 95 223-326 349-451 (458)
95 3nmz_A APC variant protein; pr 45.8 51 0.0018 35.8 8.6 99 221-325 300-408 (458)
96 1xm9_A Plakophilin 1; armadill 43.6 69 0.0024 34.4 9.3 62 257-326 9-74 (457)
97 3l6x_A Catenin delta-1; cateni 40.8 2.7E+02 0.0093 31.1 13.8 119 221-346 254-406 (584)
98 3l6x_A Catenin delta-1; cateni 35.1 61 0.0021 36.5 7.3 112 222-340 62-183 (584)
99 2of3_A ZYG-9; multifunctional 34.8 2.3E+02 0.0077 28.4 10.7 95 221-326 100-197 (266)
100 1vsy_5 Proteasome activator BL 33.4 40 0.0014 40.5 5.7 112 263-381 813-944 (997)
101 4atg_A TAF6; transcription, TF 31.4 3.5E+02 0.012 25.8 13.4 114 268-393 24-145 (196)
102 3tt9_A Plakophilin-2; cell adh 31.3 1.5E+02 0.0051 29.0 8.6 65 256-328 58-127 (233)
103 4atg_A TAF6; transcription, TF 27.6 1.9E+02 0.0065 27.7 8.3 76 267-347 105-183 (196)
104 1w9c_A CRM1 protein, exportin 20.1 74 0.0025 33.0 4.0 103 22-160 44-149 (321)
No 1
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=100.00 E-value=2.2e-46 Score=453.34 Aligned_cols=515 Identities=14% Similarity=0.125 Sum_probs=391.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhhhHhhhHHHHHHHHHHHHHhccccccCcccCHHHHHHHHHHHHHHhccCccccccc
Q 005697 16 DNLLRFKTGKRGLLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLVS 95 (682)
Q Consensus 16 d~~~~~K~kKw~~~~l~~l~~Ry~~~~~~f~p~il~~~l~~l~~~~~~~~~~~lsd~~i~~~~~fl~~~v~~~~~~~ll~ 95 (682)
+..+|||+|||+++++++++.||.+.+.+|++.+++.+|+++.. +. ..+.+++++.++++|+.++++.+..|++++
T Consensus 255 ~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~--~~--~~~~~~~~~~~al~fl~~~~~~~~~~~~~~ 330 (960)
T 1wa5_C 255 HASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTS--IS--NQPKYDILVSKSLSFLTAVTRIPKYFEIFN 330 (960)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH--CC--SCTTSHHHHHHHHHHHHHHHTSHHHHGGGC
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cC--CCcCcHHHHHHHHHHHHHHhCcHhHHHHHc
Confidence 36789999999999999999999999999999999999999986 22 346789999999999999999999999998
Q ss_pred --ccHHHHHHHHhhccccCChhhhhhhhhCHHHHHHhcCCCchhhhccccccccchhHHHHHHHHHHhhcCCCCCCCCCC
Q 005697 96 --PHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSN 173 (682)
Q Consensus 96 --p~l~~Li~~vIfP~l~~teeD~Elwe~DP~EYIr~~~d~~~~~~~~~~ed~~S~R~aA~~lL~~L~~~~~~~~~~~~~ 173 (682)
|++..|++.+|+|+|+++++|+++|++||+||||++.| .+|.+|+|.+|.++|..|
T Consensus 331 ~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e---------~~d~~s~R~aa~~~L~~l------------- 388 (960)
T 1wa5_C 331 NESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLE---------GSDTDTRRRACTDFLKEL------------- 388 (960)
T ss_dssp SHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHH---------C----CHHHHHHHHHHHH-------------
T ss_pred CchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccC---------cccccCcHHHHHHHHHHH-------------
Confidence 99999999999999999999999999999999998775 346779999999999997
Q ss_pred CcccccccccccccccccccchhhHHH--HHHHHhcCCCCCCCCCccccchhhHHHHHHHHHHHHHHHhhh---cch---
Q 005697 174 CSSVSSKRKKGEKSKRNSMRSTMGELL--VLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQ---KSE--- 245 (682)
Q Consensus 174 ~~~~~~kr~k~~~~k~~~~~~~l~~il--i~~~L~~~~~~~~~~~~~~~~~~~kegaL~~lg~la~~l~~~---~~~--- 245 (682)
++++++. ++++++ +.+++++|...+ ..+|+.||||++++|++++.+... ..+
T Consensus 389 ----~~~~~~~----------v~~~~l~~i~~~l~~~~~~~------~~~w~~reaal~algaia~~~~~~~~~~~~~~~ 448 (960)
T 1wa5_C 389 ----KEKNEVL----------VTNIFLAHMKGFVDQYMSDP------SKNWKFKDLYIYLFTALAINGNITNAGVSSTNN 448 (960)
T ss_dssp ----HHHCHHH----------HHHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCT
T ss_pred ----HHHcchh----------HHHHHHHHHHHHHHHhccCc------chhHHHHHHHHHHHHHHHHHhccccCCcccccc
Confidence 5555543 555443 677787765432 247999999999999999764211 111
Q ss_pred --hHHHHHHHhhhhcccCCCC---CcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHH
Q 005697 246 --FTANLVRSRVLPLYSVSVC---LPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAI 320 (682)
Q Consensus 246 --~le~fL~~~VlP~l~~~s~---~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL 320 (682)
.+++|+.++|+|+++ ++ +|++|+||||++|+|++.++++.+..+++.++++|.|++ ++||.+||.||
T Consensus 449 ~~~l~~~l~~~v~p~l~--~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~------~~V~~~A~~Al 520 (960)
T 1wa5_C 449 LLNVVDFFTKEIAPDLT--SNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDE------YVVYTYAAITI 520 (960)
T ss_dssp TCCHHHHHHHHTHHHHH--CSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSC------HHHHHHHHHHH
T ss_pred cccHHHHHHHHhHHHhc--CCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCC------hhHHHHHHHHH
Confidence 578999999999998 45 999999999999999999988999999999999999877 99999999999
Q ss_pred HHhhhc-------------CCCCCChHHHHHHHHHhhccc-----c-hhhhHHHHHHHHHHHHhhhhhhchHHHHHHHHH
Q 005697 321 VGLLEN-------------DYMPPEWYPLLQVIVGRIGYE-----D-EENSILFELLSSVVGAANENVADHIPYIVSSLV 381 (682)
Q Consensus 321 ~~~l~~-------------~~l~p~l~~llq~Ll~~L~~e-----~-~e~d~l~~~L~~iVe~~~e~i~P~a~~L~~~L~ 381 (682)
.+|+++ +.+.||++++++.|++.+... . .+++.++++|+++++++++++.||+..+++.|.
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~ 600 (960)
T 1wa5_C 521 EKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFI 600 (960)
T ss_dssp HHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHH
T ss_pred HHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 999984 258999999999999966553 1 268999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCChhhHHhHHHHHHHHHHhhhhhchhhhhhhccCCccchhHhHHHHHHHHHHHhhhhhcccccccccC
Q 005697 382 AAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVS 461 (682)
Q Consensus 382 ~~f~k~~~~~~~~~~~~~~~~~~aLa~~~~~~~~~~~~~~~~~~~~d~~~~~~~a~L~ti~tllq~~~~~~~~e~~~s~~ 461 (682)
..+.+.++++.+ +.+.++.|++|++++++
T Consensus 601 ~~l~~~~~~~~~--~~~~~~~~e~l~~l~~~------------------------------------------------- 629 (960)
T 1wa5_C 601 EIVTIMAKNPSN--PRFTHYTFESIGAILNY------------------------------------------------- 629 (960)
T ss_dssp HHHHHHTTSCCC--HHHHHHHHHHHHHHHHT-------------------------------------------------
T ss_pred HHHHHHHhCCCC--cHHHHHHHHHHHHHHhc-------------------------------------------------
Confidence 999887654433 34444555555555443
Q ss_pred CCcchHHhHHHHHHHHHhhcCchhHHHhhhHHHHHHHHHHHH------------hcccchhhhh-----hchHHHHHHHH
Q 005697 462 APPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLI------------GDWHAWEETE-----DLSVFDCIKEI 524 (682)
Q Consensus 462 ~~~~~~~~le~~l~~vi~~i~~~~~~l~~~~~~~l~e~~~li------------~~W~~~e~~~-----~~~~~dyl~ev 524 (682)
..++.+..+++.+.|++..+ +++...+|+.++++++ .+|+.++.+. +..+ |+..+
T Consensus 630 ~~~~~~~~~~~~~~p~~~~i------L~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~ 701 (960)
T 1wa5_C 630 TQRQNLPLLVDSMMPTFLTV------FSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKG--NIPAV 701 (960)
T ss_dssp SCGGGHHHHHHHHHHHHHHH------HHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGCCTT--THHHH
T ss_pred CCcchHHHHHHHHHHHHHHH------HHhhhHhhHHHHHHHHHHHHHhccCCCHHHHHHHHHHcCHHHhcCCC--CchhH
Confidence 22233344444444554444 4444444444444433 3466665443 2234 88888
Q ss_pred HhhhccccccccccccCCCCCCCCCChhHHHHHHHHHHhhhhhcCchhHHHHhHhHHHHhhcccccccccccchhhHHHH
Q 005697 525 VNLHSKYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISF 604 (682)
Q Consensus 525 i~l~~~~~L~Nfi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ac~~~~~ll~~~~~~~~~~~~~~~~~~~f 604 (682)
+. .|++|+.+|.+.+.+ .+.+++++...++... + ...||++...++ ..+++ .....|++.+
T Consensus 702 ~~-----~L~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~---~--~~~a~~ll~~i~----~~~~~-~~~~~yl~~i 762 (960)
T 1wa5_C 702 TR-----LLKSFIKTDSSIFPD----LVPVLGIFQRLIASKA---Y--EVHGFDLLEHIM----LLIDM-NRLRPYIKQI 762 (960)
T ss_dssp HH-----HHHHHHHHHGGGCSC----SHHHHHHHHHHHTCTT---T--HHHHHHHHHHHH----HHSCH-HHHGGGHHHH
T ss_pred HH-----HHHHHHHhChHHHHH----HHHHHHHHHHHhCCCc---c--cchHHHHHHHHH----HHCCH-HHHHHHHHHH
Confidence 88 899999999877765 4567777765554321 1 144788777766 33332 1278999999
Q ss_pred HHHHHhhhhhhcCCCCcch-HhHHHHHHHhhccChHHHHHHHhhcCccc-HH----HHHHHHHhhh
Q 005697 605 SCAAFSRFRAIQSKPSSLW-KPVVLAISSCYLCYPAVVEGILKKDEDGG-FA----LWGSALAFLC 664 (682)
Q Consensus 605 ~~~a~~~~~~~~~~~~~~~-~~~~~vi~~~~~~~p~~~~~~L~~~~~~~-~~----~w~~~~~~~~ 664 (682)
+..++.|++. ++...+. ..+..+...|+.++|+.+.++|++.+.+. +. .|...+..+.
T Consensus 763 ~~~l~~~l~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~f~~~~~~~w~~~~~~~~ 826 (960)
T 1wa5_C 763 AVLLLQRLQN--SKTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLPTIG 826 (960)
T ss_dssp HHHHHHGGGS--SCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHGGGCC
T ss_pred HHHHHHHHhh--CCcHhHHHHHHHHHHHHHHHcCHHHHHHHHHhcchhHHHHHHHHHhccchhhcc
Confidence 9999999974 3334454 33445556667789999999999876443 33 7988877653
No 2
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.84 E-value=7.7e-19 Score=212.32 Aligned_cols=298 Identities=13% Similarity=0.144 Sum_probs=209.9
Q ss_pred HHHHHHHHHHHHhhh----hHh-----------hhHHHHHHHHHHHHHhccccccCcc-cCHHHHHHHHHHHHHHhc---
Q 005697 26 RGLLIFSALVTRHRK----FSD-----------KLMPDIMNSVLQIVKYSANISKLDF-LQERIISLAFDVISHVLE--- 86 (682)
Q Consensus 26 w~~~~l~~l~~Ry~~----~~~-----------~f~p~il~~~l~~l~~~~~~~~~~~-lsd~~i~~~~~fl~~~v~--- 86 (682)
|..+.+++++.+|++ .+. ..++.+++..++.... .+.+ ..+++...+++|...+.+
T Consensus 311 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~-----~~~~~~~~~v~~~~l~fw~~l~~~~~ 385 (971)
T 2x1g_F 311 DIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDK-----PGIYPVEESCSTMALAFWYMLQDEVF 385 (971)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHC-----SSCTTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcC-----CCCCCcchhhhHHHHHHHHHHHHHHH
Confidence 888888999988874 221 2333444444444332 1111 356788889999877754
Q ss_pred -------cCcccccccccHHHHHHHHhhccccCChhhhhhhhhCHHHHHHhcCCCchhhhccccccccchhHHHHHHHHH
Q 005697 87 -------TGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGV 159 (682)
Q Consensus 87 -------~~~~~~ll~p~l~~Li~~vIfP~l~~teeD~Elwe~DP~EYIr~~~d~~~~~~~~~~ed~~S~R~aA~~lL~~ 159 (682)
.+..|..++|++..++..++.+..+.+++|.+.| ||+| + +|+.++|.++.++|..
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~--d~~e--~--------------~~f~~~R~~~~~~l~~ 447 (971)
T 2x1g_F 386 AMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKW--SSDD--L--------------ECFRCYRQDISDTFMY 447 (971)
T ss_dssp C-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCS--CHHH--H--------------HHHHHHHHHHHHHHHH
T ss_pred hcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCccccccc--CHhH--H--------------HHHHHHHHHHHHHHHH
Confidence 2345677899999999988776654444443444 6655 2 1345789999999999
Q ss_pred HhhcCCCCCCCCCCCcccccccccccccccccccchhhHHH--HHHHHhcCCCCCCCCCccccchhhHHHHHHHHHHHHH
Q 005697 160 ISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELL--VLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQE 237 (682)
Q Consensus 160 L~~~~~~~~~~~~~~~~~~~kr~k~~~~k~~~~~~~l~~il--i~~~L~~~~~~~~~~~~~~~~~~~kegaL~~lg~la~ 237 (682)
+ +..+++. ++..++ +.+.++.|... ..+|+.+||+++++|++++
T Consensus 448 ~-----------------~~~~~~~----------~l~~~~~~l~~~l~~~~~~-------~~~w~~~eaal~~l~~iae 493 (971)
T 2x1g_F 448 C-----------------YDVLNDY----------ILEILAAMLDEAIADLQRH-------PTHWTKLEACIYSFQSVAE 493 (971)
T ss_dssp H-----------------HTTCTTH----------HHHHHHHHHHHHHHHHHHC-------TTCCHHHHHHHHHHHHTTT
T ss_pred H-----------------HHHHhHH----------HHHHHHHHHHHHHHhccCC-------CCcHHHHHHHHHHHHHHHh
Confidence 6 4444432 455433 55556554311 2479999999999999999
Q ss_pred HHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcC--ChhhHHHHHHHHHHhhccCCCCCCCCcchhHH
Q 005697 238 FLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCL--PEDISADVYSSLLKALQMLDKGDTSCYPVRAS 315 (682)
Q Consensus 238 ~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l--~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~ 315 (682)
.+.+...+.++.++. ++|.+...+++|.+|.+|||++|+|++.+ +++.+..+++.++++| + .+|+..
T Consensus 494 ~~~~~~~~~l~~l~~--~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--------~~v~~~ 562 (971)
T 2x1g_F 494 HFGGEEKRQIPRLMR--VLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--------SSMSAQ 562 (971)
T ss_dssp C------CHHHHHHH--HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--------SSCHHH
T ss_pred hcChhhhHHHHHHHH--HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--------hHHHHH
Confidence 887644566777766 77888721359999999999999999974 4688999999999999 3 368999
Q ss_pred HHHHHHHhhhc--CCCCCChHHHHHHHHHhhccc--c-hhhhHHHHHHHHHHHHhh-hhhhchHHHHHHHHHHHHHHhcC
Q 005697 316 AAGAIVGLLEN--DYMPPEWYPLLQVIVGRIGYE--D-EENSILFELLSSVVGAAN-ENVADHIPYIVSSLVAAISKHMH 389 (682)
Q Consensus 316 Aa~AL~~~l~~--~~l~p~l~~llq~Ll~~L~~e--~-~e~d~l~~~L~~iVe~~~-e~i~P~a~~L~~~L~~~f~k~~~ 389 (682)
||.|+..|++. +.+.||++++++.+++.+.+. . ++...+++++..++...+ ++..||...+++.+.+.+.+.+.
T Consensus 563 A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~ 642 (971)
T 2x1g_F 563 ATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQ 642 (971)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999986 378899999999999976652 2 356677888888887654 77899999999999998887765
Q ss_pred CC
Q 005697 390 PS 391 (682)
Q Consensus 390 ~~ 391 (682)
..
T Consensus 643 ~~ 644 (971)
T 2x1g_F 643 AD 644 (971)
T ss_dssp C-
T ss_pred cC
Confidence 43
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.84 E-value=6.3e-18 Score=201.54 Aligned_cols=325 Identities=14% Similarity=0.151 Sum_probs=246.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHhhhHHHHHHHHHHHHHhccccccCcccCHHHHHHHHHHHHHHhccCcccccccccHH
Q 005697 20 RFKTGKRGLLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLVSPHFS 99 (682)
Q Consensus 20 ~~K~kKw~~~~l~~l~~Ry~~~~~~f~p~il~~~l~~l~~~~~~~~~~~lsd~~i~~~~~fl~~~v~~~~~~~ll~p~l~ 99 (682)
....+++++.++.+++..|++++..+++.+++.+++.+.. ..+.+...+++|+..+.+.+..|+.++|++.
T Consensus 228 ~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~---------~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~ 298 (852)
T 4fdd_A 228 EPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQD---------QDENVALEACEFWLTLAEQPICKDVLVRHLP 298 (852)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTC---------SSHHHHHHHHHHHHHHTTSTTHHHHHTTTHH
T ss_pred CHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC---------CcHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 3578999999999999999999999999999999888764 2478899999999999988778888999999
Q ss_pred HHHHHHhhccccCChhhhhhhhhCHHHHHHhcCCCchhhhccccccccchhHHHHHHHHHHhhcCCCCCCCCCCCccccc
Q 005697 100 VLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSNCSSVSS 179 (682)
Q Consensus 100 ~Li~~vIfP~l~~teeD~Elwe~DP~EYIr~~~d~~~~~~~~~~ed~~S~R~aA~~lL~~L~~~~~~~~~~~~~~~~~~~ 179 (682)
.++..+ ++.|+++++|++.|+.||+|. +.| |+ ..+.+++|.+|...|..| +.
T Consensus 299 ~l~p~l-l~~l~~~e~d~~~~~~d~~ed---~~~---dd----~~~~~~vr~~a~~~L~~l-----------------a~ 350 (852)
T 4fdd_A 299 KLIPVL-VNGMKYSDIDIILLKGDVEGG---SGG---DD----TISDWNLRKCSAAALDVL-----------------AN 350 (852)
T ss_dssp HHHHHH-HHHTSCCHHHHHHHHC----------------------CCCCHHHHHHHHHHHH-----------------HH
T ss_pred HHHHHH-HHHcCCcHhHHHHhcCCcccc---ccc---cc----ccccchHHHHHHHHHHHH-----------------HH
Confidence 999655 899999999988888887552 111 00 113568999999999997 33
Q ss_pred ccccccccccccccchhhHHHHHHHHhcCCCCCCCCCccccchhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcc
Q 005697 180 KRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLY 259 (682)
Q Consensus 180 kr~k~~~~k~~~~~~~l~~ili~~~L~~~~~~~~~~~~~~~~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l 259 (682)
..++. +++.+ .+++.++.. ..+|+.|++|+.++|.+++...+.-.++++.++ ..+++.+
T Consensus 351 ~~~~~----------~~~~l--~~~l~~~l~--------~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l-~~l~~~l 409 (852)
T 4fdd_A 351 VYRDE----------LLPHI--LPLLKELLF--------HHEWVVKESGILVLGAIAEGCMQGMIPYLPELI-PHLIQCL 409 (852)
T ss_dssp HHGGG----------GHHHH--HHHHHHHHT--------CSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHH-HHHHHHT
T ss_pred hccHH----------HHHHH--HHHHHHHhc--------CCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHH-HHHHHHc
Confidence 22222 44432 233333211 126999999999999999876543334555554 4677888
Q ss_pred cCCCCCcccHHHHHHHHHHhhhcC----ChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhc--CCCCCCh
Q 005697 260 SVSVCLPYLVASANWILGELASCL----PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN--DYMPPEW 333 (682)
Q Consensus 260 ~~~s~~p~LrarA~~~l~~f~~~l----~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~--~~l~p~l 333 (682)
. ++++.+|..|||++|+|++.+ ....+..+++.+++.|.|++ ..||..|+.||..++++ +.+.|++
T Consensus 410 ~--d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~------~~vr~~a~~aL~~l~~~~~~~l~~~l 481 (852)
T 4fdd_A 410 S--DKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSN------KRVQEAACSAFATLEEEACTELVPYL 481 (852)
T ss_dssp T--CSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSS------HHHHHHHHHHHHHHHHHHGGGGGGGH
T ss_pred C--CCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHHHHHhhHhhHhHH
Confidence 8 799999999999999999853 34678899999999999887 89999999999999985 4689999
Q ss_pred HHHHHHHHHhhcccc-hhhhHHHHHHHHHHHHhhhhhh--chHHHHHHHHHHHHHHhcCCCCCCChhhHHhHHHHHHHHH
Q 005697 334 YPLLQVIVGRIGYED-EENSILFELLSSVVGAANENVA--DHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMA 410 (682)
Q Consensus 334 ~~llq~Ll~~L~~e~-~e~d~l~~~L~~iVe~~~e~i~--P~a~~L~~~L~~~f~k~~~~~~~~~~~~~~~~~~aLa~~~ 410 (682)
+++++.|++.+.... .....+..++..+++..++.+. +|...+++.+.+.+..+ .+.. +.+ ..++++++.++
T Consensus 482 ~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l-~d~~---~~~-~~~~~~l~~i~ 556 (852)
T 4fdd_A 482 AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNML-KDED---KDL-FPLLECLSSVA 556 (852)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHS-CTTC---TTH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhc-cccc---HHH-HHHHHHHHHHH
Confidence 999999999765443 2445578899999988887764 38888998888876443 3332 234 36899999999
Q ss_pred Hhhhh
Q 005697 411 QSWEN 415 (682)
Q Consensus 411 ~~~~~ 415 (682)
.+.+.
T Consensus 557 ~~~g~ 561 (852)
T 4fdd_A 557 TALQS 561 (852)
T ss_dssp HHHGG
T ss_pred HHHhH
Confidence 98764
No 4
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.80 E-value=4.6e-17 Score=196.28 Aligned_cols=323 Identities=13% Similarity=0.145 Sum_probs=224.9
Q ss_pred HHHHHHHHHHHHHhhhh-Hhhh-----HHHHHHHHHHHHHhccccccCcc-cCHHHHHHHHHHHHHHhcc---------C
Q 005697 25 KRGLLIFSALVTRHRKF-SDKL-----MPDIMNSVLQIVKYSANISKLDF-LQERIISLAFDVISHVLET---------G 88 (682)
Q Consensus 25 Kw~~~~l~~l~~Ry~~~-~~~f-----~p~il~~~l~~l~~~~~~~~~~~-lsd~~i~~~~~fl~~~v~~---------~ 88 (682)
.|.++.+++++.+|++. ...+ .+.-+..+++.+-..+- ..+.+ ..+++...+++|...+++. +
T Consensus 302 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~-~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~ 380 (963)
T 2x19_B 302 METSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTG-IPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQA 380 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHT-CSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHHc-CCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhH
Confidence 47788888888888752 1111 12233344444332110 11222 2456677888888887762 3
Q ss_pred cccccccccHHHHHHHHhhccccCChhh-hhhhhhCHHHHHHhcCCCchhhhccccccccchhHHHHHHHHHHhhcCCCC
Q 005697 89 PGWRLVSPHFSVLLDKAIFPALVLNEKD-ISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPP 167 (682)
Q Consensus 89 ~~~~ll~p~l~~Li~~vIfP~l~~teeD-~Elwe~DP~EYIr~~~d~~~~~~~~~~ed~~S~R~aA~~lL~~L~~~~~~~ 167 (682)
..+..++|++..|+..+ ++.|+..+++ .+.|++|+. +++.+.|.++.++|..+
T Consensus 381 ~~~~~~~~~l~~l~~~l-l~~~~~p~~~~~~~~~~de~------------------~~~~~~r~~~~~~L~~~------- 434 (963)
T 2x19_B 381 VYQQVYRPVYFQLVDVL-LHKAQFPSDEEYGFWSSDEK------------------EQFRIYRVDISDTLMYV------- 434 (963)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHSCCCHHHHHTSCHHHH------------------HHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHH-HHHHcCCCcccccCCChhHH------------------HHHHHHHHHHHHHHHHH-------
Confidence 45677889999999655 5666653332 234444321 12335699999999986
Q ss_pred CCCCCCCcccccccccccccccccccchhhHHH--HHHHHhcCCCCCCCCCccccchhhHHHHHHHHHHHHHHHhhhcch
Q 005697 168 MGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELL--VLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSE 245 (682)
Q Consensus 168 ~~~~~~~~~~~~kr~k~~~~k~~~~~~~l~~il--i~~~L~~~~~~~~~~~~~~~~~~~kegaL~~lg~la~~l~~~~~~ 245 (682)
+...++. ++..++ +.+.+++|. +..+|+.+||+++++|++++.+.+..++
T Consensus 435 ----------~~~~~~~----------~l~~~~~~l~~~l~~~~--------~~~~w~~~eaal~al~~i~~~~~~~~~~ 486 (963)
T 2x19_B 435 ----------YEMLGAE----------LLSNLYDKLGRLLTSSE--------EPYSWQHTEALLYGFQSIAETIDVNYSD 486 (963)
T ss_dssp ----------HHHHTHH----------HHHHHHHHHHHHHHTCC--------CSCCHHHHHHHHHHHHHHTTSCCSSCCS
T ss_pred ----------HHHccHH----------HHHHHHHHHHHHHHhcC--------CCCchHHHHHHHHHHHHHHhhcCchhhH
Confidence 4443332 444332 555666651 1248999999999999999987653445
Q ss_pred hHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcC--ChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHh
Q 005697 246 FTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCL--PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGL 323 (682)
Q Consensus 246 ~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l--~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~ 323 (682)
++..++. +++.+. +++|.+|.++||++|+|++.+ +++.+..+++.++++|++ .+||..||.|+..|
T Consensus 487 ~l~~l~~--~l~~l~--~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--------~~V~~~A~~al~~l 554 (963)
T 2x19_B 487 VVPGLIG--LIPRIS--ISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--------PELSVSSVSTLKKI 554 (963)
T ss_dssp HHHHHHH--HGGGSC--CCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--------GGGHHHHHHHHHHH
T ss_pred HHHHHHH--HHHhCC--CCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--------chHHHHHHHHHHHH
Confidence 6666555 567777 579999999999999999974 567899999999999953 57999999999999
Q ss_pred hhc--CCCCCChHHHHHHHHHhhccc--c-hhhhHHHHHHHHHHHHhh-hhhhchHHHHHHHHHHHHHHhcCCCCCCChh
Q 005697 324 LEN--DYMPPEWYPLLQVIVGRIGYE--D-EENSILFELLSSVVGAAN-ENVADHIPYIVSSLVAAISKHMHPSSEPWPQ 397 (682)
Q Consensus 324 l~~--~~l~p~l~~llq~Ll~~L~~e--~-~e~d~l~~~L~~iVe~~~-e~i~P~a~~L~~~L~~~f~k~~~~~~~~~~~ 397 (682)
++. +.+.||++++++.|.+.+.+. . .+...+++++..++...+ ++..||...+++.+.+.+.+.+..+.+ ++
T Consensus 555 ~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~--~~ 632 (963)
T 2x19_B 555 CRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPN--PS 632 (963)
T ss_dssp HHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSC--HH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCC--HH
Confidence 985 478999999999999966542 1 356667888999888775 789999999999999999887654432 33
Q ss_pred hHH---hHHHHHHHHHHhhhhh
Q 005697 398 VVE---RGFAALALMAQSWENF 416 (682)
Q Consensus 398 ~~~---~~~~aLa~~~~~~~~~ 416 (682)
..+ ..+++|+.++++.+..
T Consensus 633 ~~~~~~~~l~~l~~i~~~~~~~ 654 (963)
T 2x19_B 633 NKLAIVHILGLLSNLFTTLDIS 654 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHHHHHHHHHcCCC
Confidence 333 5788899999887643
No 5
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.76 E-value=3.1e-17 Score=200.22 Aligned_cols=264 Identities=12% Similarity=0.095 Sum_probs=195.0
Q ss_pred CHHHHHHHHHHHHHHhc----cCcccccccccHHHHHHHHhhccccCChhhhhhhhhCHHHHHHhcCCCchhhhcccccc
Q 005697 70 QERIISLAFDVISHVLE----TGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWRED 145 (682)
Q Consensus 70 sd~~i~~~~~fl~~~v~----~~~~~~ll~p~l~~Li~~vIfP~l~~teeD~Elwe~DP~EYIr~~~d~~~~~~~~~~ed 145 (682)
.+.+...+++|...+++ .+..|+.++|++..|+. ++++.|++.+ |.+.+++||.||+|+..+ .+|
T Consensus 357 d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~-~ll~~m~~~e-d~~~~~dd~~e~~r~~~~---------d~d 425 (1049)
T 3m1i_C 357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRL-VIIENMVRPE-EVLVVENDEGEIVREFVK---------ESD 425 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHH-HHHHTCCCCT-TCCEEECTTSCEEECSSC---------CHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH-HHHHhcCCCc-ceeeeeCCCCcchHhhhc---------cch
Confidence 46788899999999988 67788899999999995 4679998854 444345588888887665 234
Q ss_pred ccchhHHHHHHHHHHhhcCCCCCCCCCCCcccccccccccccccccccchhhHHHHHHHHhcCCCCCCCCCccccchhhH
Q 005697 146 LFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDY 225 (682)
Q Consensus 146 ~~S~R~aA~~lL~~L~~~~~~~~~~~~~~~~~~~kr~k~~~~k~~~~~~~l~~ili~~~L~~~~~~~~~~~~~~~~~~~k 225 (682)
..+.|.++.++|..+ ++.++.. ++.. +.+.+.++... ...+|+.+
T Consensus 426 ~~~~~~~~~~~L~~l-----------------~~~~~~~----------~l~~--v~~~l~~~l~~------~~~~W~~~ 470 (1049)
T 3m1i_C 426 TIQLYKSEREVLVYL-----------------THLNVID----------TEEI--MISKLARQIDG------SEWSWHNI 470 (1049)
T ss_dssp HHHHHHHHHHHHHHH-----------------HHHCHHH----------HHHH--HHHHHHHHHTS------SSCCHHHH
T ss_pred HHHHHHHHHHHHHHH-----------------HccCHHH----------HHHH--HHHHHHHHhCC------CCCCHHHH
Confidence 457899999999996 4443332 4542 44555543221 12479999
Q ss_pred HHHHHHHHHHHHHHhhh-cchh---HHHHHHHhhhhcccCC-CCCcccHHHHHHHHHHhhhcC--ChhhHHHHHHHHHHh
Q 005697 226 FGVLMAYGGLQEFLREQ-KSEF---TANLVRSRVLPLYSVS-VCLPYLVASANWILGELASCL--PEDISADVYSSLLKA 298 (682)
Q Consensus 226 egaL~~lg~la~~l~~~-~~~~---le~fL~~~VlP~l~~~-s~~p~LrarA~~~l~~f~~~l--~~~~l~~il~~ll~~ 298 (682)
||+++++|++++.+.+. .+.+ +.++|.+ +|++..+ .++|.+|.++||++|+|++.+ +++.+..+++.++++
T Consensus 471 eaal~algsia~~~~~~~e~~~l~~v~~~l~~--l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~ 548 (1049)
T 3m1i_C 471 NTLSWAIGSISGTMSEDTEKRFVVTVIKDLLD--LTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEF 548 (1049)
T ss_dssp HHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHH--HTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCchhhHHHHHHHHHHHHH--HHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999998865432 1122 2333332 4555421 257788889999999999974 678999999999999
Q ss_pred hccCCCCCCCCcchhHHHHHHHHHhhhcC----------CCCCChHHHHHHHHHhhcccc-hhhhHHHHHHHHHHHHhh-
Q 005697 299 LQMLDKGDTSCYPVRASAAGAIVGLLEND----------YMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAAN- 366 (682)
Q Consensus 299 L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~----------~l~p~l~~llq~Ll~~L~~e~-~e~d~l~~~L~~iVe~~~- 366 (682)
|.+++ .+||..||.|+.+|++.. .+.|+++++++.+...+.... ++...+++++..++...+
T Consensus 549 l~~~~------~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~ 622 (1049)
T 3m1i_C 549 MHETH------EGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERS 622 (1049)
T ss_dssp TTSSC------HHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCS
T ss_pred hcCCC------HHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCC
Confidence 98877 899999999999999851 235999999999999655533 356777888888888776
Q ss_pred -hhhhchHHHHHHHHHHHHHHh
Q 005697 367 -ENVADHIPYIVSSLVAAISKH 387 (682)
Q Consensus 367 -e~i~P~a~~L~~~L~~~f~k~ 387 (682)
+...+|...+++.+.+.|.+.
T Consensus 623 ~~~~~~~~~~l~~~~~~~~~~~ 644 (1049)
T 3m1i_C 623 VAERNRLLSDLMQLPNMAWDTI 644 (1049)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888777654
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.63 E-value=2.1e-13 Score=161.24 Aligned_cols=314 Identities=14% Similarity=0.204 Sum_probs=217.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhHhhhHH-HHHHHHHHHHHhccccccCcccCHHHHHHHHHHHHHHhccCcc-------
Q 005697 19 LRFKTGKRGLLIFSALVTRHRKFSDKLMP-DIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPG------- 90 (682)
Q Consensus 19 ~~~K~kKw~~~~l~~l~~Ry~~~~~~f~p-~il~~~l~~l~~~~~~~~~~~lsd~~i~~~~~fl~~~v~~~~~------- 90 (682)
+.|+.+++++.++.++..+|++++.++++ .+++.++..+.. ..+++...+++|+..+++....
T Consensus 236 ~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~---------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 306 (861)
T 2bpt_A 236 EDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKS---------PNDKVASMTVEFWSTICEEEIDIAYELAQ 306 (861)
T ss_dssp SCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTC---------SSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---------CcHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 45899999999999999999988877777 777766665542 2478999999999999875321
Q ss_pred ---c-----ccccccHHHHHHHHhhccccCChhhhhhhhhCHHHHHHhcCCCchhhhccccccccchhHHHHHHHHHHhh
Q 005697 91 ---W-----RLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISV 162 (682)
Q Consensus 91 ---~-----~ll~p~l~~Li~~vIfP~l~~teeD~Elwe~DP~EYIr~~~d~~~~~~~~~~ed~~S~R~aA~~lL~~L~~ 162 (682)
| +.+++++..++..+ +. .+++.|++. .+|.+++|.+|.+.|..+
T Consensus 307 ~~~~~~~~~~~~~~~~~~il~~l-l~--~l~~~~~d~-----------------------~d~~~~~r~~a~~~L~~l-- 358 (861)
T 2bpt_A 307 FPQSPLQSYNFALSSIKDVVPNL-LN--LLTRQNEDP-----------------------EDDDWNVSMSAGACLQLF-- 358 (861)
T ss_dssp CTTCSCCCCCHHHHHHHHHHHHH-HH--HTTCCCCC------------------------CCCCCHHHHHHHHHHHHH--
T ss_pred ccCCchhhHHHHHHHHHHHHHHH-HH--HHHhccccc-----------------------ccccCcHHHHHHHHHHHH--
Confidence 1 12334444444332 23 344433110 123458999999999997
Q ss_pred cCCCCCCCCCCCcccccccccccccccccccchhhHHHHHHHHhcCCCCCCCCCccccchhhHHHHHHHHHHHHHHHh-h
Q 005697 163 SKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLR-E 241 (682)
Q Consensus 163 ~~~~~~~~~~~~~~~~~kr~k~~~~k~~~~~~~l~~ili~~~L~~~~~~~~~~~~~~~~~~~kegaL~~lg~la~~l~-~ 241 (682)
+...++. ++..+ .+++.+... ..+|+.+++|+.++|.+++... +
T Consensus 359 ---------------~~~~~~~----------~~~~l--~~~l~~~l~--------~~~~~~r~~a~~~l~~i~~~~~~~ 403 (861)
T 2bpt_A 359 ---------------AQNCGNH----------ILEPV--LEFVEQNIT--------ADNWRNREAAVMAFGSIMDGPDKV 403 (861)
T ss_dssp ---------------HHHHGGG----------GHHHH--HHHHHHHTT--------CSSHHHHHHHHHHHHHTSSSSCHH
T ss_pred ---------------HHHccHh----------HHHHH--HHHHHHHcC--------CCChhHHHHHHHHHHHHHcCCCHH
Confidence 3333322 44432 233333211 1369999999999999986543 2
Q ss_pred hcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcC-----ChhhHHHHHHHHHHhhccCCCCCCCCcchhHHH
Q 005697 242 QKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCL-----PEDISADVYSSLLKALQMLDKGDTSCYPVRASA 316 (682)
Q Consensus 242 ~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l-----~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~A 316 (682)
...++++.+ ...+++.+. +++|.+|.+|+|++|+++..+ +.+.+..+++.++++|.++ ..||..|
T Consensus 404 ~~~~~l~~i-l~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-------~~v~~~a 473 (861)
T 2bpt_A 404 QRTYYVHQA-LPSILNLMN--DQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-------PKVATNC 473 (861)
T ss_dssp HHHHHHHHH-HHHHHHGGG--CSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-------HHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHcC--CCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-------hHHHHHH
Confidence 112334433 345666777 689999999999999999853 3568999999999999653 6899999
Q ss_pred HHHHHHhhhc------CCCCCChHHHHHHHHHhhcccc-h-h-hhHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHh
Q 005697 317 AGAIVGLLEN------DYMPPEWYPLLQVIVGRIGYED-E-E-NSILFELLSSVVGAANENVADHIPYIVSSLVAAISKH 387 (682)
Q Consensus 317 a~AL~~~l~~------~~l~p~l~~llq~Ll~~L~~e~-~-e-~d~l~~~L~~iVe~~~e~i~P~a~~L~~~L~~~f~k~ 387 (682)
+.||..+++. +.+.|++++++..|++.+.... + + -..+..++..++...++++.||...+++.+...+.+.
T Consensus 474 ~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~ 553 (861)
T 2bpt_A 474 SWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQT 553 (861)
T ss_dssp HHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999874 4678999999999999765432 1 1 3347889999999999999999999999998888765
Q ss_pred cCCC----C----CCChhhHHhHHHHHHHHHHhhh
Q 005697 388 MHPS----S----EPWPQVVERGFAALALMAQSWE 414 (682)
Q Consensus 388 ~~~~----~----~~~~~~~~~~~~aLa~~~~~~~ 414 (682)
+.-. . +....+...++++|+.++...+
T Consensus 554 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 588 (861)
T 2bpt_A 554 MSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSP 588 (861)
T ss_dssp TTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred HhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2110 0 1123345566777777776554
No 7
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.59 E-value=5.2e-13 Score=158.14 Aligned_cols=313 Identities=13% Similarity=0.163 Sum_probs=220.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHhhhHH-HHHHHHHHHHHhccccccCcccCHHHHHHHHHHHHHHhcc-----------
Q 005697 20 RFKTGKRGLLIFSALVTRHRKFSDKLMP-DIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLET----------- 87 (682)
Q Consensus 20 ~~K~kKw~~~~l~~l~~Ry~~~~~~f~p-~il~~~l~~l~~~~~~~~~~~lsd~~i~~~~~fl~~~v~~----------- 87 (682)
.++.++.+++++.+++.+|++.+.++++ .+++.+++.+.. ..+.+...+++|+..+++.
T Consensus 230 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~---------~~~~v~~~al~~l~~l~~~~~~~~~~~~~~ 300 (876)
T 1qgr_A 230 DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS---------DIDEVALQGIEFWSNVCDEEMDLAIEASEA 300 (876)
T ss_dssp SHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTC---------SSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC---------CchHHHHHHHHHHHHHHHHHHhHhhhhccc
Confidence 3688999999999999999998888888 888888776543 2467888999999888764
Q ss_pred --------CcccccccccHHHHHHHHhhccccCChhhhhhhhhCHHHHHHhcCCCchhhhccccccccchhHHHHHHHHH
Q 005697 88 --------GPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGV 159 (682)
Q Consensus 88 --------~~~~~ll~p~l~~Li~~vIfP~l~~teeD~Elwe~DP~EYIr~~~d~~~~~~~~~~ed~~S~R~aA~~lL~~ 159 (682)
+..+..+++++..++..+ +..|+-.++| + | ++.+++|.+|...|..
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~ll~~l-l~~l~~~~~d------~---------~----------~~~~~~r~~a~~~l~~ 354 (876)
T 1qgr_A 301 AEQGRPPEHTSKFYAKGALQYLVPIL-TQTLTKQDEN------D---------D----------DDDWNPCKAAGVCLML 354 (876)
T ss_dssp HHHSSCCSSCCCCHHHHHHHHHHHHH-HHHTTCCCSS------C---------C----------TTCCCHHHHHHHHHHH
T ss_pred cccCCCccchhHHHHHHHHHHHhHHH-HHHhhccccc------c---------c----------ccccHHHHHHHHHHHH
Confidence 233445566777776543 4555422211 0 1 1245899999999999
Q ss_pred HhhcCCCCCCCCCCCcccccccccccccccccccchhhHHHHHHHHhcCCCCCCCCCccccchhhHHHHHHHHHHHHHHH
Q 005697 160 ISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFL 239 (682)
Q Consensus 160 L~~~~~~~~~~~~~~~~~~~kr~k~~~~k~~~~~~~l~~ili~~~L~~~~~~~~~~~~~~~~~~~kegaL~~lg~la~~l 239 (682)
+ +...++. .+..+ .+.+.+... ..+|+.+++|+.++|.++..+
T Consensus 355 l-----------------~~~~~~~----------~~~~~--l~~l~~~l~--------~~~~~~r~~a~~~l~~i~~~~ 397 (876)
T 1qgr_A 355 L-----------------ATCCEDD----------IVPHV--LPFIKEHIK--------NPDWRYRDAAVMAFGCILEGP 397 (876)
T ss_dssp H-----------------HHHHGGG----------GHHHH--HHHHHHHTT--------CSSHHHHHHHHHHHHHTSSSS
T ss_pred H-----------------HHHCcHh----------hHHHH--HHHHHHHcc--------CCChHHHHHHHHHHHHHHcCC
Confidence 7 3333332 44432 233333211 137999999999999998765
Q ss_pred h-hhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCC-----hhhHHHHHHHHHHhhccCCCCCCCCcchh
Q 005697 240 R-EQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLP-----EDISADVYSSLLKALQMLDKGDTSCYPVR 313 (682)
Q Consensus 240 ~-~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~-----~~~l~~il~~ll~~L~d~~~~~~~~~pVr 313 (682)
. +...+++.. +...+++.+. ++++.+|.+|+|++++|++.++ ...+..+++.++++|.++ ..||
T Consensus 398 ~~~~~~~~~~~-~l~~l~~~l~--d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-------~~v~ 467 (876)
T 1qgr_A 398 EPSQLKPLVIQ-AMPTLIELMK--DPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-------PRVA 467 (876)
T ss_dssp CHHHHHHHHHH-HHHHHHHHHT--CSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-------HHHH
T ss_pred CHHHHHHHHHH-HHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-------HHHH
Confidence 3 111123333 3345566677 7899999999999999998653 468999999999999763 5799
Q ss_pred HHHHHHHHHhhhc----------------CCCCCChHHHHHHHHHhhcccch---h-hhHHHHHHHHHHHHhhhhhhchH
Q 005697 314 ASAAGAIVGLLEN----------------DYMPPEWYPLLQVIVGRIGYEDE---E-NSILFELLSSVVGAANENVADHI 373 (682)
Q Consensus 314 v~Aa~AL~~~l~~----------------~~l~p~l~~llq~Ll~~L~~e~~---e-~d~l~~~L~~iVe~~~e~i~P~a 373 (682)
..|+.||..+++. +.+.||+++++..|++.+..... . ...+++++..++...+++..||.
T Consensus 468 ~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~ 547 (876)
T 1qgr_A 468 SNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAV 547 (876)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHH
T ss_pred HHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHH
Confidence 9999999999875 24899999999999996654310 1 23478899999999999999999
Q ss_pred HHHHHHHHHHHHHhcC------CCCC--CChhhHHhHHHHHHHHHHhhh
Q 005697 374 PYIVSSLVAAISKHMH------PSSE--PWPQVVERGFAALALMAQSWE 414 (682)
Q Consensus 374 ~~L~~~L~~~f~k~~~------~~~~--~~~~~~~~~~~aLa~~~~~~~ 414 (682)
..+++.+...+...+. ...+ .|+.+...++.+|+.+....+
T Consensus 548 ~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~ 596 (876)
T 1qgr_A 548 QKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQ 596 (876)
T ss_dssp HHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999888866421 1111 123455667788887776554
No 8
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.25 E-value=4.5e-10 Score=135.94 Aligned_cols=288 Identities=14% Similarity=0.084 Sum_probs=188.7
Q ss_pred CHHHHHHHHHHHHHHhcc----C--c-ccccccccHHHHHHHHhhccccCChhhhhhhhhCHHHHHHhcCCCchhhhccc
Q 005697 70 QERIISLAFDVISHVLET----G--P-GWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGW 142 (682)
Q Consensus 70 sd~~i~~~~~fl~~~v~~----~--~-~~~ll~p~l~~Li~~vIfP~l~~teeD~Elwe~DP~EYIr~~~d~~~~~~~~~ 142 (682)
.+.+...+|+|+...++. + . .....+|++..|+..+ +.-|.+.+++ .|.+|. +.| +
T Consensus 345 ~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~l-i~k~~yp~d~--~~~~~~------d~e-d------- 407 (980)
T 3ibv_A 345 YDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAI-IKKMKYDESQ--EWDDDP------DSE-E------- 407 (980)
T ss_dssp SHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHH-HHTTSCCTTC--CCCCCS------SSS-T-------
T ss_pred chhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHH-HHHccCCCcc--cccccc------chh-H-------
Confidence 467777888888887753 1 1 2345679999999765 6788887764 365310 001 0
Q ss_pred cccccchhHHHHHHHHHHhhcCCCCCCCCCCCcccccccccccccccccccchhhHHH--HHHHHhcCCCCCCCCCcccc
Q 005697 143 REDLFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELL--VLPFLSRFPIPCDANASHSR 220 (682)
Q Consensus 143 ~ed~~S~R~aA~~lL~~L~~~~~~~~~~~~~~~~~~~kr~k~~~~k~~~~~~~l~~il--i~~~L~~~~~~~~~~~~~~~ 220 (682)
.+++..-|.....++..+ ..-++.. ++..++ +.+.+++...+. ...
T Consensus 408 ~~~F~e~Rk~l~~l~d~~-----------------~~l~~~~----------~l~~~~~~i~~~l~~~l~~~-----~~~ 455 (980)
T 3ibv_A 408 EAEFQEMRKKLKIFQDTI-----------------NSIDSSL----------FSSYMYSAITSSLSTAATLS-----PEN 455 (980)
T ss_dssp HHHHHHHHHHHHHHHHHH-----------------HHHCHHH----------HHHHHHHHHHHHHHHHTTSC-----HHH
T ss_pred HHHHHHHHHHHHHHHHHH-----------------HhcChHH----------HHHHHHHHHHHHHHHHhccc-----CCC
Confidence 112333466555666554 2122221 232111 334444322111 234
Q ss_pred chhhHHHHHHHHHHHHHHHhhh---------cchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcC--ChhhHH
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQ---------KSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCL--PEDISA 289 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~---------~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l--~~~~l~ 289 (682)
+|+..|++|+++|++++.+... ..+.+.+++.+.+-..+.. .+||.+|..+||++|+|++.+ .++.+.
T Consensus 456 ~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~-~~hp~V~~~~~~~l~rys~~~~~~~~~l~ 534 (980)
T 3ibv_A 456 SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCR-HPHPLVQLLYMEILVRYASFFDYESAAIP 534 (980)
T ss_dssp HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTT-CCCHHHHHHHHHHHHHTGGGGGTCCTTHH
T ss_pred CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCC-CCCHHHHHHHHHHHHHHHHHHhcCchhHH
Confidence 7999999999999999987641 1123445555444333332 589999999999999999985 678999
Q ss_pred HHHHHHHH--hhccCCCCCCCCcchhHHHHHHHHHhhhc--CCCCCChHHHHHHHHHhhcccc---h-------------
Q 005697 290 DVYSSLLK--ALQMLDKGDTSCYPVRASAAGAIVGLLEN--DYMPPEWYPLLQVIVGRIGYED---E------------- 349 (682)
Q Consensus 290 ~il~~ll~--~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~--~~l~p~l~~llq~Ll~~L~~e~---~------------- 349 (682)
.+++.++. ++.+++ ..||..||.|+.+|++. ..+.|++.++++.+-..|.... +
T Consensus 535 ~~L~~ll~~~gl~~~~------~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~ 608 (980)
T 3ibv_A 535 ALIEYFVGPRGIHNTN------ERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSI 608 (980)
T ss_dssp HHHHHHTSTTTTTCCC------TTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHH
T ss_pred HHHHHHhccccccCCC------hhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhc
Confidence 99999999 988887 78999999999999996 5789999999999877555210 0
Q ss_pred ------hhhHHHHHHHHHHHHhh---hhhhchHHHHHHHHHHHHHHhcCCCCCC-Chh-hHHhHHHHHHHHHHhh
Q 005697 350 ------ENSILFELLSSVVGAAN---ENVADHIPYIVSSLVAAISKHMHPSSEP-WPQ-VVERGFAALALMAQSW 413 (682)
Q Consensus 350 ------e~d~l~~~L~~iVe~~~---e~i~P~a~~L~~~L~~~f~k~~~~~~~~-~~~-~~~~~~~aLa~~~~~~ 413 (682)
+.-+|++++..++...+ ++...|...+++-|.+.+.+.+...... -.. -.++.+-+++.++...
T Consensus 609 ~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf 683 (980)
T 3ibv_A 609 RNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGF 683 (980)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTS
T ss_pred ccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccC
Confidence 12238999999998854 3455588888888888888777544221 001 3445667777777644
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.24 E-value=4.1e-08 Score=116.82 Aligned_cols=309 Identities=11% Similarity=0.069 Sum_probs=209.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHhhhHHHHHHHHHHHHHhccccccCcccCHHHHHHHHHHHHHHhccCcccccccccHH
Q 005697 20 RFKTGKRGLLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLVSPHFS 99 (682)
Q Consensus 20 ~~K~kKw~~~~l~~l~~Ry~~~~~~f~p~il~~~l~~l~~~~~~~~~~~lsd~~i~~~~~fl~~~v~~~~~~~ll~p~l~ 99 (682)
..++++-|+..++.++....+.....++.+++..++.+... .+.+...+++.|..+++..+ +.+.||+.
T Consensus 187 ~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~---------~~~vr~~a~~~L~~l~~~~~--~~~~~~l~ 255 (852)
T 4fdd_A 187 SPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDE---------EPEVRKNVCRALVMLLEVRM--DRLLPHMH 255 (852)
T ss_dssp SHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCC---------CHHHHHHHHHHHHHHHHHCH--HHHGGGHH
T ss_pred CHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCC---------CHHHHHHHHHHHHHHHHhCH--HHHHHHHH
Confidence 46788889999988776544445556677777777766531 35677778888888877533 57889998
Q ss_pred HHHHHHhhccccCChhhhhhhhhCHHHHHHhcCCCchhhhccccccccchhHHHHHHHHHHhhcCCCCCCCCCCCccccc
Q 005697 100 VLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSNCSSVSS 179 (682)
Q Consensus 100 ~Li~~vIfP~l~~teeD~Elwe~DP~EYIr~~~d~~~~~~~~~~ed~~S~R~aA~~lL~~L~~~~~~~~~~~~~~~~~~~ 179 (682)
.++..++ -.+ . + +....|..|.+++..++... .++
T Consensus 256 ~l~~~l~-~~~--~-------------------~-----------~~~~vr~~a~e~l~~l~~~~------------~~~ 290 (852)
T 4fdd_A 256 NIVEYML-QRT--Q-------------------D-----------QDENVALEACEFWLTLAEQP------------ICK 290 (852)
T ss_dssp HHHHHHH-HHH--T-------------------C-----------SSHHHHHHHHHHHHHHTTST------------THH
T ss_pred HHHHHHH-HHc--c-------------------C-----------CcHHHHHHHHHHHHHHhcch------------hHH
Confidence 8776542 110 0 1 01246899999999973211 011
Q ss_pred ccccccccccccccchhhHHH--HHHHHhcCC--------CC--CCCCCcc-ccchhhHHHHHHHHHHHHHHHhhhcchh
Q 005697 180 KRKKGEKSKRNSMRSTMGELL--VLPFLSRFP--------IP--CDANASH-SRIQKDYFGVLMAYGGLQEFLREQKSEF 246 (682)
Q Consensus 180 kr~k~~~~k~~~~~~~l~~il--i~~~L~~~~--------~~--~~~~~~~-~~~~~~kegaL~~lg~la~~l~~~~~~~ 246 (682)
+.-+ +.+..++ +.+.+. |. .. .+...++ ...|..+.+|..+++.++..+.+ .
T Consensus 291 ~~~~----------~~~~~l~p~ll~~l~-~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~- 355 (852)
T 4fdd_A 291 DVLV----------RHLPKLIPVLVNGMK-YSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---E- 355 (852)
T ss_dssp HHHT----------TTHHHHHHHHHHHTS-CCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---G-
T ss_pred HHHH----------HHHHHHHHHHHHHcC-CcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---H-
Confidence 1001 1333322 222221 00 11 0100001 15788999999999999988753 2
Q ss_pred HHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCC---hhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHh
Q 005697 247 TANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLP---EDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGL 323 (682)
Q Consensus 247 le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~---~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~ 323 (682)
+.+.+..++...++ ++++..|..|++.+|.+++..+ ...+..+++.++++|.|++ ..||..|+.||..+
T Consensus 356 ~~~~l~~~l~~~l~--~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~------~~Vr~~a~~~l~~l 427 (852)
T 4fdd_A 356 LLPHILPLLKELLF--HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKK------ALVRSITCWTLSRY 427 (852)
T ss_dssp GHHHHHHHHHHHHT--CSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSS------HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHH
Confidence 22333445555567 6889999999999999988542 2478899999999999988 89999999999999
Q ss_pred hhc---CCCCCChHHHHHHHHHhhcccc-hhhhHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHhcCCCCCCChhhH
Q 005697 324 LEN---DYMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVV 399 (682)
Q Consensus 324 l~~---~~l~p~l~~llq~Ll~~L~~e~-~e~d~l~~~L~~iVe~~~e~i~P~a~~L~~~L~~~f~k~~~~~~~~~~~~~ 399 (682)
.+. ....+++.+++..|++.+.... .--+....+|..+++..++.+.||.+.+++.|...+-+. + ....
T Consensus 428 ~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~-----~--~~~~ 500 (852)
T 4fdd_A 428 AHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKY-----Q--HKNL 500 (852)
T ss_dssp HHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHC-----C--HHHH
T ss_pred HHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHh-----C--hHHH
Confidence 875 4678899999999999775443 234557888999999999999999999999999888543 1 1344
Q ss_pred HhHHHHHHHHHHhhh
Q 005697 400 ERGFAALALMAQSWE 414 (682)
Q Consensus 400 ~~~~~aLa~~~~~~~ 414 (682)
..++++++.++.+.+
T Consensus 501 ~~~~~ai~~l~~~~~ 515 (852)
T 4fdd_A 501 LILYDAIGTLADSVG 515 (852)
T ss_dssp HHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHhh
Confidence 457788888887665
No 10
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.11 E-value=2.4e-10 Score=124.67 Aligned_cols=206 Identities=15% Similarity=0.179 Sum_probs=143.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHhhhHH-HHHHHHHHHHHhccccccCcccCHHHHHHHHHHHHHHhccC----------
Q 005697 20 RFKTGKRGLLIFSALVTRHRKFSDKLMP-DIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETG---------- 88 (682)
Q Consensus 20 ~~K~kKw~~~~l~~l~~Ry~~~~~~f~p-~il~~~l~~l~~~~~~~~~~~lsd~~i~~~~~fl~~~v~~~---------- 88 (682)
..+.++++++++..+..+|++++.++++ .+++.++..+.. ..+.+...+++|+..+++..
T Consensus 230 ~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~---------~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~ 300 (462)
T 1ibr_B 230 DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS---------DIDEVALQGIEFWSNVCDEEMDLAIEASEA 300 (462)
T ss_dssp SHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHC---------SSHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---------CchHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4688999999999999999998888888 888887776653 24788899999999998752
Q ss_pred ---------cccccccccHHHHHHHHhhccccCChhhhhhhhhCHHHHHHhcCCCchhhhccccccccchhHHHHHHHHH
Q 005697 89 ---------PGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGV 159 (682)
Q Consensus 89 ---------~~~~ll~p~l~~Li~~vIfP~l~~teeD~Elwe~DP~EYIr~~~d~~~~~~~~~~ed~~S~R~aA~~lL~~ 159 (682)
..++.+++++..++..+ +..| ++.|++. .+|.+++|.+|.++|..
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~l~p~l-~~~l--~~~d~d~-----------------------~~~~~~~r~~a~~~L~~ 354 (462)
T 1ibr_B 301 AEQGRPPEHTSKFYAKGALQYLVPIL-TQTL--TKQDEND-----------------------DDDDWNPCKAAGVCLML 354 (462)
T ss_dssp TCSSSCSSCCCCCHHHHHHHHHHHHH-HHHT--TCCCSSC-----------------------CTTCCSHHHHHHHHHHH
T ss_pred cccCCCccchhHHHHHHHhhhccHHH-HHHH--Hhccccc-----------------------ccccchHHHHHHHHHHH
Confidence 34455666666666432 3333 3332211 22355899999999999
Q ss_pred HhhcCCCCCCCCCCCcccccccccccccccccccchhhHHHHHHHHhcCCCCCCCCCccccchhhHHHHHHHHHHHHHHH
Q 005697 160 ISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFL 239 (682)
Q Consensus 160 L~~~~~~~~~~~~~~~~~~~kr~k~~~~k~~~~~~~l~~ili~~~L~~~~~~~~~~~~~~~~~~~kegaL~~lg~la~~l 239 (682)
| +...++. .+.. +.+.+.++.. ..+|+.|++|++++|.+++..
T Consensus 355 l-----------------~~~~~~~----------~~~~--~~~~l~~~l~--------~~~~~~r~aal~~l~~l~~~~ 397 (462)
T 1ibr_B 355 L-----------------ATCCEDD----------IVPH--VLPFIKEHIK--------NPDWRYRDAAVMAFGCILEGP 397 (462)
T ss_dssp H-----------------HHHTTTT----------HHHH--HHHHHHHHTT--------CSSHHHHHHHHHHHHHTSSSS
T ss_pred H-----------------HHhccHH----------HHHH--HHHHHHHHhc--------CCChHHHHHHHHHHHHHhcCC
Confidence 7 3333332 4443 2334433221 137999999999999999764
Q ss_pred hh-hcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCC-----hhhHHHHHHHHHHhhc
Q 005697 240 RE-QKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLP-----EDISADVYSSLLKALQ 300 (682)
Q Consensus 240 ~~-~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~-----~~~l~~il~~ll~~L~ 300 (682)
.. .-++++.. +...+++.+. +++|.+|.+|||++|+|++.++ ++.+..+++.++++|+
T Consensus 398 ~~~~~~~~l~~-~~~~l~~~l~--d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 398 EPSQLKPLVIQ-AMPTLIELMK--DPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp CTTTTCTTTTT-HHHHHHHGGG--CSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC--
T ss_pred cHHHHHHHHHH-HHHHHHHHhc--CCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHhc
Confidence 31 11233433 3457778888 7899999999999999998642 4678999999888774
No 11
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.11 E-value=5e-08 Score=115.27 Aligned_cols=313 Identities=13% Similarity=0.072 Sum_probs=202.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHhh--hHHHHHHHHHHHHHhccccccCcccCHHHHHHHHHHHHHHhccCccccccccc
Q 005697 20 RFKTGKRGLLIFSALVTRHRKFSDK--LMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLVSPH 97 (682)
Q Consensus 20 ~~K~kKw~~~~l~~l~~Ry~~~~~~--f~p~il~~~l~~l~~~~~~~~~~~lsd~~i~~~~~fl~~~v~~~~~~~ll~p~ 97 (682)
.++.++++++++..++...+...+. +.+.+++.+.+.+.. -.+++...++++|..+++. .++.+.||
T Consensus 187 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~---------~~~~vr~~a~~~l~~l~~~--~~~~~~~~ 255 (876)
T 1qgr_A 187 SNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC---------PDTRVRVAALQNLVKIMSL--YYQYMETY 255 (876)
T ss_dssp CHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTC---------SSHHHHHHHHHHHHHHHHH--SGGGCHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCC---------CCHHHHHHHHHHHHHHHHH--hHHHHHHH
Confidence 4678899999999987654433221 112244444443321 1356778889999999875 33667888
Q ss_pred HH-HHHHHHhhccccCChhhhhhhhhCHHHHHHhcCCCchhhhccccccccchhHHHHHHHHHHhhcCC-----------
Q 005697 98 FS-VLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKG----------- 165 (682)
Q Consensus 98 l~-~Li~~vIfP~l~~teeD~Elwe~DP~EYIr~~~d~~~~~~~~~~ed~~S~R~aA~~lL~~L~~~~~----------- 165 (682)
+. .++..++ ..+ . + +..+.|..|.+++..++....
T Consensus 256 ~~~~l~~~~~-~~~--~-------------------~-----------~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~ 302 (876)
T 1qgr_A 256 MGPALFAITI-EAM--K-------------------S-----------DIDEVALQGIEFWSNVCDEEMDLAIEASEAAE 302 (876)
T ss_dssp HTTTHHHHHH-HHH--T-------------------C-----------SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHh--c-------------------C-----------CchHHHHHHHHHHHHHHHHHHhHhhhhccccc
Confidence 77 6655432 111 0 0 012457777777777642210
Q ss_pred ---CCCCCCCCCcccccccccccccccccccchhhHHH--HHHHHhcCCCCCCCCCccccchhhHHHHHHHHHHHHHHHh
Q 005697 166 ---PPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELL--VLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLR 240 (682)
Q Consensus 166 ---~~~~~~~~~~~~~~kr~k~~~~k~~~~~~~l~~il--i~~~L~~~~~~~~~~~~~~~~~~~kegaL~~lg~la~~l~ 240 (682)
.|.. ...+..+ ..+..++ +.+.+.+... + . +.++|..+.+|..+++.++..+.
T Consensus 303 ~~~~~~~-------~~~~~~~----------~~~~~ll~~ll~~l~~~~~--d--~-~~~~~~~r~~a~~~l~~l~~~~~ 360 (876)
T 1qgr_A 303 QGRPPEH-------TSKFYAK----------GALQYLVPILTQTLTKQDE--N--D-DDDDWNPCKAAGVCLMLLATCCE 360 (876)
T ss_dssp HSSCCSS-------CCCCHHH----------HHHHHHHHHHHHHTTCCCS--S--C-CTTCCCHHHHHHHHHHHHHHHHG
T ss_pred cCCCccc-------hhHHHHH----------HHHHHHhHHHHHHhhcccc--c--c-cccccHHHHHHHHHHHHHHHHCc
Confidence 0000 0000000 0122221 3344443211 1 1 23578999999999999998875
Q ss_pred hhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCCh----hhHHHHHHHHHHhhccCCCCCCCCcchhHHH
Q 005697 241 EQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPE----DISADVYSSLLKALQMLDKGDTSCYPVRASA 316 (682)
Q Consensus 241 ~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~----~~l~~il~~ll~~L~d~~~~~~~~~pVrv~A 316 (682)
+ ..++ .+..++...++ ++++..|..|++++|.+++...+ ..+.++++.++++|.|++ ..||..|
T Consensus 361 ~---~~~~-~~l~~l~~~l~--~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~------~~vr~~a 428 (876)
T 1qgr_A 361 D---DIVP-HVLPFIKEHIK--NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPS------VVVRDTA 428 (876)
T ss_dssp G---GGHH-HHHHHHHHHTT--CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSS------HHHHHHH
T ss_pred H---hhHH-HHHHHHHHHcc--CCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCC------HHHHHHH
Confidence 3 2333 33346666677 68899999999999999987653 356778889999999887 8999999
Q ss_pred HHHHHHhhhc--CC--CCCChHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhh--------------hhhhchHHHHHH
Q 005697 317 AGAIVGLLEN--DY--MPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAAN--------------ENVADHIPYIVS 378 (682)
Q Consensus 317 a~AL~~~l~~--~~--l~p~l~~llq~Ll~~L~~e~~e~d~l~~~L~~iVe~~~--------------e~i~P~a~~L~~ 378 (682)
+.||..+++. +. ..|++.+++..+++.+.+...-......+|..+++.++ +.+.||.+.+++
T Consensus 429 ~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~ 508 (876)
T 1qgr_A 429 AWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQ 508 (876)
T ss_dssp HHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHH
T ss_pred HHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHH
Confidence 9999999986 22 57999999999999765432123456788888888876 348899999999
Q ss_pred HHHHHHHHhcCCCCCCChhhHHhHHHHHHHHHHhhh
Q 005697 379 SLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWE 414 (682)
Q Consensus 379 ~L~~~f~k~~~~~~~~~~~~~~~~~~aLa~~~~~~~ 414 (682)
.|...+.+.-. + ...+...++++|+.++...+
T Consensus 509 ~L~~~l~~~~~---~-~~~~r~~~~~~l~~l~~~~~ 540 (876)
T 1qgr_A 509 KLLETTDRPDG---H-QNNLRSSAYESLMEIVKNSA 540 (876)
T ss_dssp HHHHHTTSCSS---C-STTHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhCcCc---c-hhhHHHHHHHHHHHHHHHCc
Confidence 88877633211 1 12577789999999988765
No 12
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.02 E-value=1e-08 Score=124.39 Aligned_cols=265 Identities=11% Similarity=0.102 Sum_probs=167.9
Q ss_pred HHHHHHHHHHHHHHhcc----CcccccccccHHHHHHHHhhccccCChhhhhhhhhCHHHHHHhcCCCchhhhccccccc
Q 005697 71 ERIISLAFDVISHVLET----GPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDL 146 (682)
Q Consensus 71 d~~i~~~~~fl~~~v~~----~~~~~ll~p~l~~Li~~vIfP~l~~teeD~Elwe~DP~EYIr~~~d~~~~~~~~~~ed~ 146 (682)
..+...+|+|=....+. +..+..++|++..|+..+ +..|.+.++++ .+++|-.|++|...+ +.|+ .+++
T Consensus 358 ~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vl-i~km~~P~e~~-ive~d~~~~~~e~~~-d~d~----~~~f 430 (1023)
T 4hat_C 358 RELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVI-IENMVRPEEVL-VVENDEGEIVREFVK-ESDT----IQLY 430 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHH-HHSCCCCTTCC-EEECTTSCEEECSSC-CGGG----HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH-HHhcCCCcccc-cCCCCCccHHHHhcc-chHH----HHHH
Confidence 45667788886655542 123456789999998765 57888877543 344443333332221 1122 1223
Q ss_pred cchhHHHHHHHHHHhhcCCCCCCCCCCCcccccccccccccccccccchhhHHHHHHHHhcCCCCCCCCCccccchhhHH
Q 005697 147 FTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYF 226 (682)
Q Consensus 147 ~S~R~aA~~lL~~L~~~~~~~~~~~~~~~~~~~kr~k~~~~k~~~~~~~l~~ili~~~L~~~~~~~~~~~~~~~~~~~ke 226 (682)
.+-| +.|..+ +.--+.. ++. + +.+.+.+.... ...+|+.+|
T Consensus 431 ~~~R----d~L~~l-----------------~~l~~~~----------~~~-~-~~~~l~~~l~~------~~~~W~~~E 471 (1023)
T 4hat_C 431 KSER----EVLVYL-----------------THLNVID----------TEE-I-MISKLARQIDG------SEWSWHNIN 471 (1023)
T ss_dssp HHHH----HHHHHH-----------------HHHCHHH----------HHH-H-HHHHHHHHHSS------TTCCHHHHH
T ss_pred HHHH----HHHHHH-----------------hccCHHH----------HHH-H-HHHHHHHHhcC------CCCCHHHHH
Confidence 3445 555553 2111111 333 1 33444331111 123799999
Q ss_pred HHHHHHHHHHHHHhhh-cchhHHHHHHHhhhhccc--CC-CCCcccHHHHHHHHHHhhhcC--ChhhHHHHHHHHHHhhc
Q 005697 227 GVLMAYGGLQEFLREQ-KSEFTANLVRSRVLPLYS--VS-VCLPYLVASANWILGELASCL--PEDISADVYSSLLKALQ 300 (682)
Q Consensus 227 gaL~~lg~la~~l~~~-~~~~le~fL~~~VlP~l~--~~-s~~p~LrarA~~~l~~f~~~l--~~~~l~~il~~ll~~L~ 300 (682)
|+++++|++++.+.+. .++++...+. .++.... .+ ++.+.+|..+||++|+|++.+ +++.+..+++.+++.|.
T Consensus 472 A~~~a~gaIa~~~~~~~e~~~l~~vi~-~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~ 550 (1023)
T 4hat_C 472 TLSWAIGSISGTMSEDTEKRFVVTVIK-DLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMH 550 (1023)
T ss_dssp HHHHHHHHTTTSSCHHHHHHHHHHHHH-HHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHH-HHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhh
Confidence 9999999999877542 2233333333 2222111 00 144567778999999999974 78899999999999998
Q ss_pred cCCCCCCCCcchhHHHHHHHHHhhhcC----------CCCCChHHHHHHHHHhhcccc-hhhhHHHHHHHHHHHHhhhh-
Q 005697 301 MLDKGDTSCYPVRASAAGAIVGLLEND----------YMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANEN- 368 (682)
Q Consensus 301 d~~~~~~~~~pVrv~Aa~AL~~~l~~~----------~l~p~l~~llq~Ll~~L~~e~-~e~d~l~~~L~~iVe~~~e~- 368 (682)
+++ ..|...||.|+..+++.. ...|++.++++.+...+..-. .....+.+++..++...+.+
T Consensus 551 ~~~------~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~ 624 (1023)
T 4hat_C 551 ETH------EGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVA 624 (1023)
T ss_dssp CSC------HHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHH
T ss_pred cCC------HHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHh
Confidence 876 569999999999998851 347899999999988655333 35667899999999887644
Q ss_pred -hhchHHHHHHHHHHHHHHhc
Q 005697 369 -VADHIPYIVSSLVAAISKHM 388 (682)
Q Consensus 369 -i~P~a~~L~~~L~~~f~k~~ 388 (682)
...+...|++.+.+.|.++.
T Consensus 625 ~~~~~l~~L~~~~~~~~~~l~ 645 (1023)
T 4hat_C 625 ERNRLLSDLMQLPNMAWDTIV 645 (1023)
T ss_dssp HHHHHHHHHTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhHHHHHHHHH
Confidence 33377888888887777665
No 13
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.88 E-value=2.7e-05 Score=91.60 Aligned_cols=178 Identities=11% Similarity=-0.002 Sum_probs=131.7
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCCh----hhHHHHHHHH
Q 005697 220 RIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPE----DISADVYSSL 295 (682)
Q Consensus 220 ~~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~----~~l~~il~~l 295 (682)
+.|..+.++..+++.++..+.+ ..+ +.+..++...++ ++.+..|..|++++|.+++...+ ..+.++++.+
T Consensus 343 ~~~~~r~~a~~~L~~l~~~~~~---~~~-~~l~~~l~~~l~--~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l 416 (861)
T 2bpt_A 343 DDWNVSMSAGACLQLFAQNCGN---HIL-EPVLEFVEQNIT--ADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSI 416 (861)
T ss_dssp CCCHHHHHHHHHHHHHHHHHGG---GGH-HHHHHHHHHHTT--CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHccH---hHH-HHHHHHHHHHcC--CCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4688899999999999987753 223 334455566677 67788999999999999876542 3566788888
Q ss_pred HHhhccCCCCCCCCcchhHHHHHHHHHhhhc--CCC--CCChHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhh----h
Q 005697 296 LKALQMLDKGDTSCYPVRASAAGAIVGLLEN--DYM--PPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAAN----E 367 (682)
Q Consensus 296 l~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~--~~l--~p~l~~llq~Ll~~L~~e~~e~d~l~~~L~~iVe~~~----e 367 (682)
++.+.|++ ..||..|+.+|..+... +.+ .+++.+++..+++.+.....--.....++..+++.++ +
T Consensus 417 ~~~l~d~~------~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~v~~~a~~al~~l~~~~~~~~~~ 490 (861)
T 2bpt_A 417 LNLMNDQS------LQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPS 490 (861)
T ss_dssp HHGGGCSC------HHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSC
T ss_pred HHHcCCCc------HHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhcccccch
Confidence 89998887 88999999999999875 233 6789999999998664432113345677888888876 6
Q ss_pred hhhchHHHHHHHHHHHHHHhcCCCCCCChhhHHhHHHHHHHHHHhhh
Q 005697 368 NVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWE 414 (682)
Q Consensus 368 ~i~P~a~~L~~~L~~~f~k~~~~~~~~~~~~~~~~~~aLa~~~~~~~ 414 (682)
.+.||.+.+++.|...+ .... ..+.+...++++|+.++...+
T Consensus 491 ~l~~~~~~il~~L~~~l----~~~d-~~~~vr~~a~~al~~l~~~~~ 532 (861)
T 2bpt_A 491 PIYNFYPALVDGLIGAA----NRID-NEFNARASAFSALTTMVEYAT 532 (861)
T ss_dssp GGGGGHHHHHHHHHHHH----TCSC-CGGGHHHHHHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHH----hCcC-cchHHHHHHHHHHHHHHHHcc
Confidence 68899999988887765 2221 113577888999999888654
No 14
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.60 E-value=1.3e-05 Score=98.99 Aligned_cols=149 Identities=13% Similarity=0.102 Sum_probs=110.4
Q ss_pred hhcccCCCCCcccHHHHHHHHHHhhhcCC---hhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhc---CCC
Q 005697 256 LPLYSVSVCLPYLVASANWILGELASCLP---EDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN---DYM 329 (682)
Q Consensus 256 lP~l~~~s~~p~LrarA~~~l~~f~~~l~---~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~---~~l 329 (682)
.+.++ ++++..|..+|..++.+....+ ...+.++++.+++.|.|++. ...||..|+.++..++.. +.+
T Consensus 440 ~~~l~--~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~----~~~v~~~a~~~l~~~~~~~~~~~~ 513 (1230)
T 1u6g_C 440 HKQMK--EKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSS----SSNLKIDALSCLYVILCNHSPQVF 513 (1230)
T ss_dssp HHHTT--CSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSS----CHHHHHHHHHHHHHHHHSSCGGGG
T ss_pred HHHhc--cCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCC----cchHHHHHHHHHHHHHHhCCHHHH
Confidence 34477 6788899999999999987543 35789999999999998762 147999999999999874 346
Q ss_pred CCChHHHHHHHHHhhcccc-hhhhHHHHHHHHHHHHhhh-------hhhchHHHHHHHHHHHHHHhcCCCCCCChhhHHh
Q 005697 330 PPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANE-------NVADHIPYIVSSLVAAISKHMHPSSEPWPQVVER 401 (682)
Q Consensus 330 ~p~l~~llq~Ll~~L~~e~-~e~d~l~~~L~~iVe~~~e-------~i~P~a~~L~~~L~~~f~k~~~~~~~~~~~~~~~ 401 (682)
.|++.+++..+++.+.+.. .-......++..+++.+++ .+.||...+++.+...+.+ ... .+.+.+.
T Consensus 514 ~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~---~d~--~~~vr~~ 588 (1230)
T 1u6g_C 514 HPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKA---ADI--DQEVKER 588 (1230)
T ss_dssp HHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSC---SSS--CHHHHHH
T ss_pred HhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhc---cCC--CHHHHHH
Confidence 6777777777777554432 1112356778888888876 7889999999888777622 112 2478888
Q ss_pred HHHHHHHHHHhhhh
Q 005697 402 GFAALALMAQSWEN 415 (682)
Q Consensus 402 ~~~aLa~~~~~~~~ 415 (682)
++.+++.++...++
T Consensus 589 a~~~lg~L~~~~g~ 602 (1230)
T 1u6g_C 589 AISCMGQIICNLGD 602 (1230)
T ss_dssp HHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHhCc
Confidence 99999999987653
No 15
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.53 E-value=1.3e-06 Score=89.03 Aligned_cols=182 Identities=14% Similarity=0.122 Sum_probs=137.7
Q ss_pred cchhhHHHHHHHHHH-HHHHHhhhc--chhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCC-----hhhHHHH
Q 005697 220 RIQKDYFGVLMAYGG-LQEFLREQK--SEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLP-----EDISADV 291 (682)
Q Consensus 220 ~~~~~kegaL~~lg~-la~~l~~~~--~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~-----~~~l~~i 291 (682)
.+|+.+.+|+..++. +.+...+.. ......+ ...+.+.+.. .+++.+|..||.++|.+++.+. ......+
T Consensus 28 ~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~-~~~L~~~l~~-D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~l 105 (249)
T 2qk1_A 28 SKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNL-LGIYGHIIQK-DANIQAVALAAQSVELICDKLKTPGFSKDYVSLV 105 (249)
T ss_dssp SSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHH-HHHHHHHHHH-CSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCccccCcccHHHH-HHHHHHHhcc-CCCHHHHHHHHHHHHHHHHhcccccccHHHHHHH
Confidence 489999999999998 765432211 1111233 3355566732 6889999999999999998653 2577889
Q ss_pred HHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhc-CCCCC--ChHHHHHHHHHhhcccc-hhhhHHHHHHHHHHHHhh-
Q 005697 292 YSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN-DYMPP--EWYPLLQVIVGRIGYED-EENSILFELLSSVVGAAN- 366 (682)
Q Consensus 292 l~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~-~~l~p--~l~~llq~Ll~~L~~e~-~e~d~l~~~L~~iVe~~~- 366 (682)
++.++..+.|.. ..||-.|..|+..++++ +...+ ++..+++.|+..|.+.. ......+..|.++++..+
T Consensus 106 lp~ll~~l~dkk------~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 106 FTPLLDRTKEKK------PSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHGGGCCC------HHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHcCCC------HHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 999999999887 78999999999999985 22334 49999999999776554 346667888999998888
Q ss_pred --hhhhchH-HHHHHHHHHHHHHhcCCCCCCChhhHHhHHHHHHHHHHhhhhh
Q 005697 367 --ENVADHI-PYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENF 416 (682)
Q Consensus 367 --e~i~P~a-~~L~~~L~~~f~k~~~~~~~~~~~~~~~~~~aLa~~~~~~~~~ 416 (682)
+.+.||. +.+++.|...+ .+. -+.+++.++++|+.+....|+.
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l----~D~---~~~VR~aA~~~l~~i~~~vG~~ 225 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIV----NDT---QPAIRTIGFESFAILIKIFGMN 225 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHH----TCS---SHHHHHHHHHHHHHHHHHHCSG
T ss_pred cchhHHHHHHHHHHHHHHHHh----cCC---CHHHHHHHHHHHHHHHHHhCHH
Confidence 5678888 88888887776 333 2579999999999999988753
No 16
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=98.52 E-value=5.6e-06 Score=100.53 Aligned_cols=162 Identities=13% Similarity=0.138 Sum_probs=117.7
Q ss_pred chhhHHHHHHHHHHHHHHHhhh-cchhHHHHHHHhh-hhcccCC-CCCcccHHHHHHHHHHhhhcC--ChhhHHHHHHHH
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQ-KSEFTANLVRSRV-LPLYSVS-VCLPYLVASANWILGELASCL--PEDISADVYSSL 295 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~-~~~~le~fL~~~V-lP~l~~~-s~~p~LrarA~~~l~~f~~~l--~~~~l~~il~~l 295 (682)
+|...+++++++|++|..+... .++++..++.-.+ +|+-..+ .+-+.+++..||++|+|.+.+ +++.+..+++.+
T Consensus 492 sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L 571 (1073)
T 3gjx_A 492 SWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKL 571 (1073)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHH
T ss_pred CHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHH
Confidence 6999999999999998665431 2233433333111 2222110 113467778899999999974 788999999999
Q ss_pred HHhhccCCCCCCCCcchhHHHHHHHHHhhhcC----------CCCCChHHHHHHHHHhhcccc-hhhhHHHHHHHHHHHH
Q 005697 296 LKALQMLDKGDTSCYPVRASAAGAIVGLLEND----------YMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGA 364 (682)
Q Consensus 296 l~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~----------~l~p~l~~llq~Ll~~L~~e~-~e~d~l~~~L~~iVe~ 364 (682)
+..+.+++ ..|+..||.|+..+++.. ...|++.++++.+-.....-. ...-.+.+++..++..
T Consensus 572 ~~~m~~~~------~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~ 645 (1073)
T 3gjx_A 572 FEFMHETH------DGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGA 645 (1073)
T ss_dssp HHHTTCCS------TTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCC------HHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 99999887 789999999999998852 346899999988888544422 3566689999999998
Q ss_pred hhhhh-hc-hHHHHHHHHHHHHHHhc
Q 005697 365 ANENV-AD-HIPYIVSSLVAAISKHM 388 (682)
Q Consensus 365 ~~e~i-~P-~a~~L~~~L~~~f~k~~ 388 (682)
.+.+. .| +...+++.+.+.|.++.
T Consensus 646 ~p~~~~~~~~i~~Lm~~~~~~w~~l~ 671 (1073)
T 3gjx_A 646 QTDQTVQEHLIEKYMLLPNQVWDSII 671 (1073)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 88765 34 77778777777776654
No 17
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.37 E-value=6.8e-06 Score=82.61 Aligned_cols=177 Identities=16% Similarity=0.082 Sum_probs=129.5
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCCh---hhHHHHHHHHH
Q 005697 220 RIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPE---DISADVYSSLL 296 (682)
Q Consensus 220 ~~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~---~~l~~il~~ll 296 (682)
.+|+.+.+|+..++.+.....+...+....+ ...+...+.. ++++-+|..||.+++.++..+.+ .....+++.++
T Consensus 27 ~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i-~~~L~~~l~k-d~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll 104 (242)
T 2qk2_A 27 KKWTLRKESLEVLEKLLTDHPKLENGEYGAL-VSALKKVITK-DSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLL 104 (242)
T ss_dssp SSHHHHHHHHHHHHHHHHHCSSBCCCCCHHH-HHHHHHHHHH-CSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccCCCCCCCCHHHH-HHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4899999999999988776322111112233 2344455631 57889999999999999986533 57888999999
Q ss_pred HhhccCCCCCCCCcchhHHHHHHHHHhhhcCCCCCChHHHHHHHHHhhcccc-hhhhHHHHHHHHHHHHhhhh--hhchH
Q 005697 297 KALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANEN--VADHI 373 (682)
Q Consensus 297 ~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~~l~p~l~~llq~Ll~~L~~e~-~e~d~l~~~L~~iVe~~~e~--i~P~a 373 (682)
.++.|++ ..||..|+.||..++... .+..++..++..|.+.. .--..+...|..++..++.+ ..+|.
T Consensus 105 ~~l~d~~------~~vr~~a~~aL~~~~~~~----~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l 174 (242)
T 2qk2_A 105 EKFKEKK------PNVVTALREAIDAIYAST----SLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL 174 (242)
T ss_dssp HGGGCCC------HHHHHHHHHHHHHHHTTS----CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH
T ss_pred HHHcCCC------HHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH
Confidence 9999987 899999999999998853 35778888888666543 23444677777777776432 46788
Q ss_pred HHHHHHHHHHHHHhcCCCCCCChhhHHhHHHHHHHHHHhhhh
Q 005697 374 PYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWEN 415 (682)
Q Consensus 374 ~~L~~~L~~~f~k~~~~~~~~~~~~~~~~~~aLa~~~~~~~~ 415 (682)
+.+++.|...+ .+. .+.++..++++|+.++..+++
T Consensus 175 ~~l~p~l~~~l----~D~---~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 175 KLLTTSLVKTL----NEP---DPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp HHHHHHHHHHH----TSS---CHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHh----cCC---ChHHHHHHHHHHHHHHHHcCH
Confidence 88888877776 333 357999999999999998874
No 18
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.26 E-value=6.5e-05 Score=84.12 Aligned_cols=171 Identities=16% Similarity=0.112 Sum_probs=110.0
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCCh-----hhHHHHHHHH
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPE-----DISADVYSSL 295 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~-----~~l~~il~~l 295 (682)
+|+.+.++..++|.++..+.. +....-+...+...++ ++++.+|..|++.++++...+++ ..+..+++.+
T Consensus 255 ~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l 329 (588)
T 1b3u_A 255 SWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMK--DCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCI 329 (588)
T ss_dssp SHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHH
Confidence 699999999999999887632 1111222233334455 68899999999999999997654 3577888888
Q ss_pred HHhhccCCCCCCCCcchhHHHHHHHHHhhhc---CCCCCChHHHHHHHHHhhcccchh-hhHHHHHHHHHHHHhhhhhhc
Q 005697 296 LKALQMLDKGDTSCYPVRASAAGAIVGLLEN---DYMPPEWYPLLQVIVGRIGYEDEE-NSILFELLSSVVGAANENVAD 371 (682)
Q Consensus 296 l~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~---~~l~p~l~~llq~Ll~~L~~e~~e-~d~l~~~L~~iVe~~~e~i~P 371 (682)
.+.++|++ ..||..|+.+|..+... +...+++.|++..+++ .+..+ -.....++..++...+.+-
T Consensus 330 ~~~l~d~~------~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~---d~~~~Vr~~a~~~l~~l~~~~~~~~-- 398 (588)
T 1b3u_A 330 KELVSDAN------QHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLK---DECPEVRLNIISNLDCVNEVIGIRQ-- 398 (588)
T ss_dssp HHHHTCSC------HHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHT---CSCHHHHHHHHTTCHHHHHHSCHHH--
T ss_pred HHHhcCCC------HHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC---CCchHHHHHHHHHHHHHHHhcCHHH--
Confidence 89998887 79999999999998763 1222344455544443 32201 2234555666666554321
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCChhhHHhHHHHHHHHHHhhh
Q 005697 372 HIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWE 414 (682)
Q Consensus 372 ~a~~L~~~L~~~f~k~~~~~~~~~~~~~~~~~~aLa~~~~~~~ 414 (682)
+...+.+.| .+.+.+.. ..+...++++|+.++...+
T Consensus 399 ~~~~~lp~l----~~~~~d~~---~~vr~~~~~~l~~l~~~~~ 434 (588)
T 1b3u_A 399 LSQSLLPAI----VELAEDAK---WRVRLAIIEYMPLLAGQLG 434 (588)
T ss_dssp HHHHHHHHH----HHHHTCSS---HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH----HHHhcCCC---chHHHHHHHHHHHHHHHcC
Confidence 223333333 33444432 3678888899988887655
No 19
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.18 E-value=7.8e-05 Score=80.74 Aligned_cols=114 Identities=12% Similarity=-0.022 Sum_probs=91.6
Q ss_pred ccchhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCC----hhhHHHHHHH
Q 005697 219 SRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLP----EDISADVYSS 294 (682)
Q Consensus 219 ~~~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~----~~~l~~il~~ 294 (682)
.++|..+.+|..+++.++..+.+ .+.+.+..++...++ ++++..|..|+.++|.+++..+ ...+..+++.
T Consensus 339 ~~~~~~r~~a~~~L~~l~~~~~~----~~~~~~~~~l~~~l~--~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~ 412 (462)
T 1ibr_B 339 DDDWNPCKAAGVCLMLLATCCED----DIVPHVLPFIKEHIK--NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPT 412 (462)
T ss_dssp TTCCSHHHHHHHHHHHHHHHTTT----THHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHH
T ss_pred cccchHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 45789999999999999988752 233445556667777 7889999999999999987533 2356789999
Q ss_pred HHHhhccCCCCCCCCcchhHHHHHHHHHhhhc--CC--CCCChHHHHHHHHHhh
Q 005697 295 LLKALQMLDKGDTSCYPVRASAAGAIVGLLEN--DY--MPPEWYPLLQVIVGRI 344 (682)
Q Consensus 295 ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~--~~--l~p~l~~llq~Ll~~L 344 (682)
++++|.|++ ..||..|+.||..+++. +. -.|++++++..|++.|
T Consensus 413 l~~~l~d~~------~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L 460 (462)
T 1ibr_B 413 LIELMKDPS------VVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGL 460 (462)
T ss_dssp HHHGGGCSC------HHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC-
T ss_pred HHHHhcCCC------HHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHh
Confidence 999999988 89999999999999885 33 3689999999998754
No 20
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.84 E-value=0.00037 Score=69.72 Aligned_cols=144 Identities=13% Similarity=0.060 Sum_probs=109.4
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhc
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQ 300 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~ 300 (682)
+.+.+.+|+.++|.++..+...-.++++.++ ..++..+. ++.+.+|..|+.++..+....+ +..+++.+...|.
T Consensus 70 ~~~V~~~a~~~l~~la~~l~~~~~~~~~~il-p~ll~~l~--d~~~~vr~~a~~aL~~~~~~~~---~~~ll~~l~~~l~ 143 (242)
T 2qk2_A 70 NVVLVAMAGKCLALLAKGLAKRFSNYASACV-PSLLEKFK--EKKPNVVTALREAIDAIYASTS---LEAQQESIVESLS 143 (242)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGGHHHHHHHH-HHHHHGGG--CCCHHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHHHHHc--CCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHc
Confidence 6778999999999999887642223443333 35556666 6889999999999999988654 5678899999998
Q ss_pred cCCCCCCCCcchhHHHHHHHHHhhhc----CCCCCChHHHHHHHHHhhcccc-hhhhHHHHHHHHHHHHhhhh-hhchHH
Q 005697 301 MLDKGDTSCYPVRASAAGAIVGLLEN----DYMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANEN-VADHIP 374 (682)
Q Consensus 301 d~~~~~~~~~pVrv~Aa~AL~~~l~~----~~l~p~l~~llq~Ll~~L~~e~-~e~d~l~~~L~~iVe~~~e~-i~P~a~ 374 (682)
+.+ ..||..++..|..++.. ....++++.++..|++.|.... .--+....+|..+....+++ +.||.+
T Consensus 144 ~~~------~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~ 217 (242)
T 2qk2_A 144 NKN------PSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLA 217 (242)
T ss_dssp CSC------HHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGT
T ss_pred CCC------hHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 877 79999999999997764 2567899999999999775443 22445688888888887776 677665
Q ss_pred HH
Q 005697 375 YI 376 (682)
Q Consensus 375 ~L 376 (682)
.|
T Consensus 218 ~L 219 (242)
T 2qk2_A 218 DV 219 (242)
T ss_dssp TS
T ss_pred hc
Confidence 54
No 21
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=97.84 E-value=0.0013 Score=81.24 Aligned_cols=289 Identities=13% Similarity=0.123 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHHhccccccCcccCHHHHHHHHHHHHHHhccCc--ccccccccHHHHHHHHh--hccccCChhhhhhhhh
Q 005697 47 PDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGP--GWRLVSPHFSVLLDKAI--FPALVLNEKDISEWEE 122 (682)
Q Consensus 47 p~il~~~l~~l~~~~~~~~~~~lsd~~i~~~~~fl~~~v~~~~--~~~ll~p~l~~Li~~vI--fP~l~~teeD~Elwe~ 122 (682)
..+++.+++.... -++.+...+++|-...++... ....+++++..|+..+. +..|.+.+++...
T Consensus 350 ~~~l~~lL~~t~~---------~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~--- 417 (1204)
T 3a6p_A 350 GKYLESFLAFTTH---------PSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSP--- 417 (1204)
T ss_dssp HHHHHHHHHHHTS---------SCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSST---
T ss_pred HHHHHHHHHHHhC---------ccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCc---
Confidence 3455555555442 146677788999888877632 12346688888887651 3666776644310
Q ss_pred CHHHHHHhcCCCchhhhccccccccchhHHHHHHHHHHhhcCCCCCCCCCCCcccccccccccccccccccchhhHH--H
Q 005697 123 DADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGEL--L 200 (682)
Q Consensus 123 DP~EYIr~~~d~~~~~~~~~~ed~~S~R~aA~~lL~~L~~~~~~~~~~~~~~~~~~~kr~k~~~~k~~~~~~~l~~i--l 200 (682)
-.+|...++|.+ ++. .+++..-|....+++..+ +...+.. .+.-+ .
T Consensus 418 -~~~~~~~D~d~~-~E~---~~~f~~~Rk~~~d~l~~i-----------------~~v~p~~----------~l~~v~~~ 465 (1204)
T 3a6p_A 418 -SCEYSRFDFDSD-EDF---NAFFNSSRAQQGEVMRLA-----------------CRLDPKT----------SFQMAGEW 465 (1204)
T ss_dssp -HHHHHHHHCSSH-HHH---HHHHHHHHHHHHHHHHHH-----------------HHHCHHH----------HHHHHHHH
T ss_pred -chhhhhcccCCc-HHH---HHHHHHHHHHHHHHHHHH-----------------HhcCHHH----------HHHHHHHH
Confidence 123443344321 111 122456799899999986 4433332 22211 1
Q ss_pred HHHHHhcCCCCC-----------CC---CCccccchhhHHHHHHHHHHHHHHHhhhc-chh-----HHHHHHHhhhhccc
Q 005697 201 VLPFLSRFPIPC-----------DA---NASHSRIQKDYFGVLMAYGGLQEFLREQK-SEF-----TANLVRSRVLPLYS 260 (682)
Q Consensus 201 i~~~L~~~~~~~-----------~~---~~~~~~~~~~kegaL~~lg~la~~l~~~~-~~~-----le~fL~~~VlP~l~ 260 (682)
+.+.+.+..... +. .. ....|...|+...+++++...+.+.. ++. ...++. . ++.+.
T Consensus 466 l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~-~-ll~~~ 542 (1204)
T 3a6p_A 466 LKYQLSTFLDAGSVNSCSAVGTGEGSLCSV-FSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQ-M-VLNFD 542 (1204)
T ss_dssp HHHHHTCC-----------------CCSCS-SSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHH-H-HHHCC
T ss_pred HHHHHhhhhcccccccccccccccccccCc-CCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHH-H-HHhCC
Confidence 333333211100 00 01 23468889999999999988874422 111 223322 2 22223
Q ss_pred CCCCCcccHHHHHHHHHHhhhcC--ChhhHHHHHHHHHHhhccCCCCCC------CCcchhHHHHHHHHHhhhc--CCCC
Q 005697 261 VSVCLPYLVASANWILGELASCL--PEDISADVYSSLLKALQMLDKGDT------SCYPVRASAAGAIVGLLEN--DYMP 330 (682)
Q Consensus 261 ~~s~~p~LrarA~~~l~~f~~~l--~~~~l~~il~~ll~~L~d~~~~~~------~~~pVrv~Aa~AL~~~l~~--~~l~ 330 (682)
..+|.+|.|++.++|+|...+ .++.+..+++.++..+.++..+.. +.--||..||.|+..+++. +.+.
T Consensus 543 --~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~ 620 (1204)
T 3a6p_A 543 --TKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVL 620 (1204)
T ss_dssp --CSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHG
T ss_pred --CCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 458899999999999999874 688999999999999976321100 0135999999999999986 5888
Q ss_pred CChHHHHHHHHHhhccc--c--hhhhHHHHHHHHHHHHh-h-hhhhchHHHHHHHHHHHH
Q 005697 331 PEWYPLLQVIVGRIGYE--D--EENSILFELLSSVVGAA-N-ENVADHIPYIVSSLVAAI 384 (682)
Q Consensus 331 p~l~~llq~Ll~~L~~e--~--~e~d~l~~~L~~iVe~~-~-e~i~P~a~~L~~~L~~~f 384 (682)
||+.++.+.+-..+++. . .+.-.+.+++..+...+ + +....|...+++-+++.|
T Consensus 621 p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w 680 (1204)
T 3a6p_A 621 PNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIW 680 (1204)
T ss_dssp GGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999998777755421 1 24555666665553222 1 223335556666555554
No 22
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.83 E-value=0.0003 Score=86.84 Aligned_cols=154 Identities=14% Similarity=0.127 Sum_probs=117.2
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhc
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQ 300 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~ 300 (682)
++..+++|+.+++.+.+...+.-.+++..++ ..+++.+. ++++.+|.+|+.+++.++...+++.+..+++.+++.|.
T Consensus 147 ~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll-~~l~~~L~--~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~ 223 (1230)
T 1u6g_C 147 DVSVQLEALDIMADMLSRQGGLLVNFHPSIL-TCLLPQLT--SPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELS 223 (1230)
T ss_dssp CHHHHHHHHHHHHHHHHHTCSSCTTTHHHHH-HHHGGGGG--CSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhHhHHHHHHHHHH-HHHHHHHc--CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc
Confidence 6788999999999988754332234554444 46778888 68899999999999999987766566677888888887
Q ss_pred cCCCCCCCCcchhHHHHHHHHHhhhc--CCCCCChHHHHHHHHHhhcccchh-hhHHHHHHHHHHHHhhhhhhchHHHHH
Q 005697 301 MLDKGDTSCYPVRASAAGAIVGLLEN--DYMPPEWYPLLQVIVGRIGYEDEE-NSILFELLSSVVGAANENVADHIPYIV 377 (682)
Q Consensus 301 d~~~~~~~~~pVrv~Aa~AL~~~l~~--~~l~p~l~~llq~Ll~~L~~e~~e-~d~l~~~L~~iVe~~~e~i~P~a~~L~ 377 (682)
+.+ +..+|..|+.++..+... +.+.|++..++..+++.+..+..+ -+....+++.++..+++++.||.+.++
T Consensus 224 ~~~-----~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li 298 (1230)
T 1u6g_C 224 KND-----SMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTII 298 (1230)
T ss_dssp HTC-----SSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHH
T ss_pred cCC-----chhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHH
Confidence 654 257899999999999885 477899999999999966544312 356788999999999999999998888
Q ss_pred HHHHH
Q 005697 378 SSLVA 382 (682)
Q Consensus 378 ~~L~~ 382 (682)
+.+..
T Consensus 299 ~~ll~ 303 (1230)
T 1u6g_C 299 NICLK 303 (1230)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 77654
No 23
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=97.77 E-value=0.0002 Score=80.15 Aligned_cols=169 Identities=13% Similarity=0.015 Sum_probs=108.1
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChh-hHHHHHHHHHHh
Q 005697 220 RIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPED-ISADVYSSLLKA 298 (682)
Q Consensus 220 ~~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~-~l~~il~~ll~~ 298 (682)
.+|+.+.+++.+++.++..+... ...+.+...++..+. ++.+-+|..|+..++.+...+.++ .+..+++.+.+.
T Consensus 414 ~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~--d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~ 488 (588)
T 1b3u_A 414 AKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLV--DHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAM 488 (588)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCGG---GCCHHHHHHHHHGGG--CSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHT
T ss_pred CCchHHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 37999999999999999877531 222233445555677 678899999999999998876544 456788888887
Q ss_pred hccCCCCCCCCcchhHHHHHHHHHhhhcCCCCCChHHHHHHHHHhhcccchh-hhHHHHHHHHHHHHhhhhhhchHHHHH
Q 005697 299 LQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEE-NSILFELLSSVVGAANENVADHIPYIV 377 (682)
Q Consensus 299 L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~~l~p~l~~llq~Ll~~L~~e~~e-~d~l~~~L~~iVe~~~e~i~P~a~~L~ 377 (682)
+.+++ ..||..|+.++..+...---.+++..++..+++.+.....+ -..+..++..++..++++.. .
T Consensus 489 ~~~~~------~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~------~ 556 (588)
T 1b3u_A 489 SGDPN------YLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL------Q 556 (588)
T ss_dssp TTCSC------HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHH------H
T ss_pred hhCCC------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhh------H
Confidence 77776 89999999999998874111124555666666644443211 22356667777666555422 1
Q ss_pred HHHHHHHHHhcCCCCCCChhhHHhHHHHHHH
Q 005697 378 SSLVAAISKHMHPSSEPWPQVVERGFAALAL 408 (682)
Q Consensus 378 ~~L~~~f~k~~~~~~~~~~~~~~~~~~aLa~ 408 (682)
+.+...+.++..+. + +.++..+.++|+.
T Consensus 557 ~~~~p~l~~l~~d~-d--~~vr~~a~~al~~ 584 (588)
T 1b3u_A 557 SEVKPILEKLTQDQ-D--VDVKYFAQEALTV 584 (588)
T ss_dssp HHHHHHHHHHTTCS-S--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC-c--hhHHHHHHHHHHH
Confidence 23333333333333 2 3566666666643
No 24
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.00058 Score=69.32 Aligned_cols=147 Identities=8% Similarity=0.079 Sum_probs=110.6
Q ss_pred chhhHHHHHHHHHHHHHHHh-hhcc-hhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChh----hHHHHHHH
Q 005697 221 IQKDYFGVLMAYGGLQEFLR-EQKS-EFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPED----ISADVYSS 294 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~-~~~~-~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~----~l~~il~~ 294 (682)
|.....+|+.++|.++..+. ..-. +|...++ ..++.-+. +..+-+|..|...+-.|....++. .+..+++.
T Consensus 74 n~~v~~~A~~al~~la~~l~~~~f~~~y~~~ll-p~ll~~l~--dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~ 150 (249)
T 2qk1_A 74 NIQAVALAAQSVELICDKLKTPGFSKDYVSLVF-TPLLDRTK--EKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKD 150 (249)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHH-HHHHHGGG--CCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcccccccHHHHHHHH-HHHHHHHc--CCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHH
Confidence 56778999999999999886 4333 5554433 35566666 677889999999999988865432 37789999
Q ss_pred HHHhhccCCCCCCCCcchhHHHHHHHHHhhhcCC-----CCCCh-HHHHHHHHHhhcccchh-hhHHHHHHHHHHHHhhh
Q 005697 295 LLKALQMLDKGDTSCYPVRASAAGAIVGLLENDY-----MPPEW-YPLLQVIVGRIGYEDEE-NSILFELLSSVVGAANE 367 (682)
Q Consensus 295 ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~~-----l~p~l-~~llq~Ll~~L~~e~~e-~d~l~~~L~~iVe~~~e 367 (682)
++..|+.++ ..||..|..+|..++.... +.|++ ++++..+.+.+.+...+ -+.-..+|..+...+++
T Consensus 151 l~~~l~~k~------~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 151 ILEHMKHKT------PQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp HHHHTTCSS------HHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHcCCC------hHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCH
Confidence 999998877 7999999999999998632 44677 77888888855443322 33457888888888887
Q ss_pred h-hhchHHHH
Q 005697 368 N-VADHIPYI 376 (682)
Q Consensus 368 ~-i~P~a~~L 376 (682)
+ +.||++.|
T Consensus 225 ~~~~p~l~~L 234 (249)
T 2qk1_A 225 NTFVKTLEHL 234 (249)
T ss_dssp GGGHHHHHHS
T ss_pred HHHHHHHHHH
Confidence 6 99988876
No 25
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.29 E-value=0.051 Score=64.99 Aligned_cols=139 Identities=10% Similarity=0.079 Sum_probs=99.8
Q ss_pred CCCcccHHHHHHHHHHhhhcCC---hhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhc-CCCCCChHHHHH
Q 005697 263 VCLPYLVASANWILGELASCLP---EDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN-DYMPPEWYPLLQ 338 (682)
Q Consensus 263 s~~p~LrarA~~~l~~f~~~l~---~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~-~~l~p~l~~llq 338 (682)
++...-|-.|++++|..++..+ .+.+.++++.+ ..+.+++ ..||..|+.++.+|.+. ..-.+++++++.
T Consensus 460 ~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l-~~l~~~~------~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~ 532 (963)
T 2x19_B 460 PYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLI-PRISISN------VQLADTVMFTIGALSEWLADHPVMINSVLP 532 (963)
T ss_dssp SCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHG-GGSCCCS------HHHHHHHHHHHHHTHHHHHHCHHHHTTTHH
T ss_pred CCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHH-HhCCCCc------HHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 4556677789999999998743 24566666633 3344433 67999999999998763 111245677777
Q ss_pred HHHHhhcccchhhhHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHhcCCCCCCChhhHHhHHHHHHHHHHhhh
Q 005697 339 VIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWE 414 (682)
Q Consensus 339 ~Ll~~L~~e~~e~d~l~~~L~~iVe~~~e~i~P~a~~L~~~L~~~f~k~~~~~~~~~~~~~~~~~~aLa~~~~~~~ 414 (682)
.++..|.+.. =......++.++++..++.+.||.+.|++.|...+.+- ... .+..+.++++++.++.+.+
T Consensus 533 ~l~~~l~~~~-V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~---~~~--~~~~~~~~eai~~i~~~~~ 602 (963)
T 2x19_B 533 LVLHALGNPE-LSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQ---IHK--TSQCMWLMQALGFLLSALQ 602 (963)
T ss_dssp HHHHHTTCGG-GHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTT---CSC--HHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHhCCch-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccC---CCC--hHHHHHHHHHHHHHHhcCC
Confidence 7777665532 34567888999999999999999999999998877431 112 3678889999999987653
No 26
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.28 E-value=0.085 Score=63.35 Aligned_cols=183 Identities=10% Similarity=0.036 Sum_probs=112.6
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhccc---C-CCCCcccHHHHHHHHHHhhhc-C----Chh-----
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYS---V-SVCLPYLVASANWILGELASC-L----PED----- 286 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~---~-~s~~p~LrarA~~~l~~f~~~-l----~~~----- 286 (682)
.+..+.+|..++..++....+ .+-+.+..+|...++ . +++....|-.|...+|.+++. . +..
T Consensus 374 ~~s~R~aa~~~L~~l~~~~~~----~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~ 449 (960)
T 1wa5_C 374 TDTRRRACTDFLKELKEKNEV----LVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNL 449 (960)
T ss_dssp --CHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTT
T ss_pred ccCcHHHHHHHHHHHHHHcch----hHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccc
Confidence 345677888888888877543 222222223322222 1 123445666788889999753 1 111
Q ss_pred -hHHHHH-HHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhcCCCCCChHHHHHHHHHhhcccc-hhhhHHHHHHHHHHH
Q 005697 287 -ISADVY-SSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVG 363 (682)
Q Consensus 287 -~l~~il-~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~~l~p~l~~llq~Ll~~L~~e~-~e~d~l~~~L~~iVe 363 (682)
.+..++ +.++..|++++. ....||..|+.+|..|.+.- -+.++.++++.+++.|.+.. .=......++..+++
T Consensus 450 ~~l~~~l~~~v~p~l~~~~~---~~p~vr~~a~~~lg~~~~~~-~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 450 LNVVDFFTKEIAPDLTSNNI---PHIILRVDAIKYIYTFRNQL-TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp CCHHHHHHHHTHHHHHCSSC---SCHHHHHHHHHHHHHTGGGS-CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHhHHHhcCCCC---CCceehHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 566654 457888887721 12889999999999998841 12368888888888775432 113445778888877
Q ss_pred Hh-----------hhhhhchHHHHHHHHHHHHHHhcCCCCCCChhhHHhHHHHHHHHHHhh
Q 005697 364 AA-----------NENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSW 413 (682)
Q Consensus 364 ~~-----------~e~i~P~a~~L~~~L~~~f~k~~~~~~~~~~~~~~~~~~aLa~~~~~~ 413 (682)
.. ++.+.||++.|+++|...+-+....+.. ...++.++++|+.++.+.
T Consensus 526 ~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~--~~~~e~l~~al~~vv~~~ 584 (960)
T 1wa5_C 526 IRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEK--LAENEFLMRSIFRVLQTS 584 (960)
T ss_dssp CBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHH--HTSCHHHHHHHHHHHHHH
T ss_pred cccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCc--ccccHHHHHHHHHHHHHH
Confidence 42 4669999999999999887553100000 013467788888777755
No 27
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.25 E-value=0.0086 Score=64.44 Aligned_cols=138 Identities=15% Similarity=0.120 Sum_probs=85.4
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCCh---hhH-HHHHHHHH
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPE---DIS-ADVYSSLL 296 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~---~~l-~~il~~ll 296 (682)
++..+..|+.+++.++..-.......++.-+...+...++ ++++-+|..|+|+++.++..-+. ..+ ..+++.++
T Consensus 247 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~--~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 324 (450)
T 2jdq_A 247 DYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLS--SPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALI 324 (450)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTT--CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred chhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHc--CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH
Confidence 5778999999999987642211111111112334455666 67899999999999999863211 111 25778888
Q ss_pred HhhccCCCCCCCCcchhHHHHHHHHHhhhc-C--CCCCCh-HHHHHHHHHhhcccc-hhhhHHHHHHHHHHHHhh
Q 005697 297 KALQMLDKGDTSCYPVRASAAGAIVGLLEN-D--YMPPEW-YPLLQVIVGRIGYED-EENSILFELLSSVVGAAN 366 (682)
Q Consensus 297 ~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~-~--~l~p~l-~~llq~Ll~~L~~e~-~e~d~l~~~L~~iVe~~~ 366 (682)
+.|.+++ ..||..|+.||.++... + .++..+ ..++..|+..+.... .-......+|..++....
T Consensus 325 ~~l~~~~------~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 325 SILQTAE------FRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGE 393 (450)
T ss_dssp HHHHHSC------HHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCC------HHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch
Confidence 9998877 78999999999999874 1 111111 124556666444332 113344666666666544
No 28
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.25 E-value=0.042 Score=65.91 Aligned_cols=113 Identities=8% Similarity=0.037 Sum_probs=84.6
Q ss_pred CCcccHHHHHHHHHHhhhcCC---hhhHHHHHHHHHHhhc--cCCCCCCCCcchhHHHHHHHHHhhhc-CCCCCChHHHH
Q 005697 264 CLPYLVASANWILGELASCLP---EDISADVYSSLLKALQ--MLDKGDTSCYPVRASAAGAIVGLLEN-DYMPPEWYPLL 337 (682)
Q Consensus 264 ~~p~LrarA~~~l~~f~~~l~---~~~l~~il~~ll~~L~--d~~~~~~~~~pVrv~Aa~AL~~~l~~-~~l~p~l~~ll 337 (682)
+...-|-.|++.+|.+++..+ .+.+.++++ ++..+. |++ ..||..|+.+|.+|.+. ..-..++++++
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~------~~vr~~a~~~l~~~~~~l~~~~~~l~~vl 548 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYEKLN------VKLLGTALETMGSYCNWLMENPAYIPPAI 548 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCTTTSC------HHHHHHHHHHHHHTHHHHC----CHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCccccC------HHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 445667788899999988642 346777777 555555 334 78999999999999874 22236899999
Q ss_pred HHHHHhhcccchhhhHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHH
Q 005697 338 QVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAIS 385 (682)
Q Consensus 338 q~Ll~~L~~e~~e~d~l~~~L~~iVe~~~e~i~P~a~~L~~~L~~~f~ 385 (682)
..+++.|. .. -......++.++++..++++.||.+.|++.|...+-
T Consensus 549 ~~l~~~l~-~~-v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~ 594 (971)
T 2x1g_F 549 NLLVRGLN-SS-MSAQATLGLKELCRDCQLQLKPYADPLLNACHASLN 594 (971)
T ss_dssp HHHHHHHH-SS-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-hH-HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHc
Confidence 99998773 32 366778899999999999999999999999988874
No 29
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.06 E-value=0.017 Score=64.31 Aligned_cols=174 Identities=13% Similarity=0.146 Sum_probs=101.2
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhH-----HHHHHHH
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDIS-----ADVYSSL 295 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l-----~~il~~l 295 (682)
++..+..|+.++|.++..-.......+..-+...++..+. ++.+-+|..|+|+++.++..- ++.. ..+++.+
T Consensus 312 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~vr~~A~~aL~~l~~~~-~~~~~~~~~~~~l~~L 388 (530)
T 1wa5_B 312 STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS--SPKENIKKEACWTISNITAGN-TEQIQAVIDANLIPPL 388 (530)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHH
T ss_pred ChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHc--CCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHH
Confidence 5778899999999987532111111122222334555666 678999999999999998632 2222 2466788
Q ss_pred HHhhccCCCCCCCCcchhHHHHHHHHHhhhcC-C---CCCChHH--HHHHHHHhhcccc-hhhhHHHHHHHHHHHHhhh-
Q 005697 296 LKALQMLDKGDTSCYPVRASAAGAIVGLLEND-Y---MPPEWYP--LLQVIVGRIGYED-EENSILFELLSSVVGAANE- 367 (682)
Q Consensus 296 l~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~-~---l~p~l~~--llq~Ll~~L~~e~-~e~d~l~~~L~~iVe~~~e- 367 (682)
++.|.+++ ..||..|+.||.+++... . ...++.. ++..|+..+.... .--.....+|..++.....
T Consensus 389 ~~lL~~~~------~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~ 462 (530)
T 1wa5_B 389 VKLLEVAE------YKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEAD 462 (530)
T ss_dssp HHHHHHSC------HHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCC------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 88888877 899999999999998752 1 1111111 4455555343332 1233456667777665543
Q ss_pred ------hhhchHHHHHHH-HHHHHHHhcCCCCCCChhhHHhHHHHH
Q 005697 368 ------NVADHIPYIVSS-LVAAISKHMHPSSEPWPQVVERGFAAL 406 (682)
Q Consensus 368 ------~i~P~a~~L~~~-L~~~f~k~~~~~~~~~~~~~~~~~~aL 406 (682)
.+.||...+... ....+.++...+. +.+.+.+..+|
T Consensus 463 ~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~---~~v~~~a~~il 505 (530)
T 1wa5_B 463 KEARGLNINENADFIEKAGGMEKIFNCQQNEN---DKIYEKAYKII 505 (530)
T ss_dssp HHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSC---HHHHHHHHHHH
T ss_pred hhcccccccHHHHHHHHcCcHHHHHHHHcCCC---HHHHHHHHHHH
Confidence 235566555432 2334444443332 35556555554
No 30
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=96.88 E-value=0.012 Score=63.28 Aligned_cols=98 Identities=10% Similarity=0.044 Sum_probs=68.2
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHH-----HHHHHH
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISA-----DVYSSL 295 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~-----~il~~l 295 (682)
++..+..|+.++|.++..-.+.....++.-+...++..+. ++++-+|..|||+++.++...+++... .+++.+
T Consensus 289 ~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L 366 (450)
T 2jdq_A 289 KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQ--TAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPL 366 (450)
T ss_dssp SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh--cCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHH
Confidence 5678899999999988532211111111122223344455 578899999999999998764444332 367888
Q ss_pred HHhhccCCCCCCCCcchhHHHHHHHHHhhhc
Q 005697 296 LKALQMLDKGDTSCYPVRASAAGAIVGLLEN 326 (682)
Q Consensus 296 l~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~ 326 (682)
++.|.+++ ..||..|+.||.+++..
T Consensus 367 ~~ll~~~~------~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 367 CDLLTVMD------SKIVQVALNGLENILRL 391 (450)
T ss_dssp HHGGGSSC------HHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCC------HHHHHHHHHHHHHHHHh
Confidence 89998876 78999999999999874
No 31
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=96.71 E-value=0.039 Score=61.19 Aligned_cols=138 Identities=13% Similarity=0.118 Sum_probs=82.7
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCC-CcccHHHHHHHHHHhhhcCChhhHH-----HHHHH
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVC-LPYLVASANWILGELASCLPEDISA-----DVYSS 294 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~-~p~LrarA~~~l~~f~~~l~~~~l~-----~il~~ 294 (682)
++..+..|+.++|.++..-.......+..-+...+...+. ++ .+-+|..|||+++.++.. +++... .+++.
T Consensus 299 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~~v~~~A~~~L~nl~~~-~~~~~~~~~~~~~i~~ 375 (528)
T 4b8j_A 299 SPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLT--QNLKKSIKKEACWTISNITAG-NKDQIQAVINAGIIGP 375 (528)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHH--SCCCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTCHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHc--CCCcHHHHHHHHHHHHHHHCC-CHHHHHHHHHCCCHHH
Confidence 4577899999999988632211011111111223344455 45 889999999999999863 232222 45678
Q ss_pred HHHhhccCCCCCCCCcchhHHHHHHHHHhhhcC--CCCCCh--HHHHHHHHHhhcccc-hhhhHHHHHHHHHHHHhhh
Q 005697 295 LLKALQMLDKGDTSCYPVRASAAGAIVGLLEND--YMPPEW--YPLLQVIVGRIGYED-EENSILFELLSSVVGAANE 367 (682)
Q Consensus 295 ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~--~l~p~l--~~llq~Ll~~L~~e~-~e~d~l~~~L~~iVe~~~e 367 (682)
+++.|.+++ ..||..|+.||.++..+. ....++ ..++..|+..|.... .-......+|..++.....
T Consensus 376 L~~lL~~~~------~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~ 447 (528)
T 4b8j_A 376 LVNLLQTAE------FDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGET 447 (528)
T ss_dssp HHHHHHHSC------HHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCC------HHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 888888877 889999999999998862 111111 123445555443332 1233345666666655544
No 32
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=96.69 E-value=0.1 Score=57.84 Aligned_cols=177 Identities=11% Similarity=0.095 Sum_probs=100.4
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCCh--hh-H-HHHHHHHH
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPE--DI-S-ADVYSSLL 296 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~--~~-l-~~il~~ll 296 (682)
+...+..|+.+++.++..-.+.....++.-+...++..+. ++.+-+|..|+++++.++..-+. +. + ..+++.++
T Consensus 270 d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 347 (530)
T 1wa5_B 270 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS--HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALR 347 (530)
T ss_dssp CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGG--CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHC--CCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHH
Confidence 3566788888998887542211011111112234445566 67889999999999999864321 11 1 24778888
Q ss_pred HhhccCCCCCCCCcchhHHHHHHHHHhhhcC------CCCCChHHHHHHHHHhhcccc-hhhhHHHHHHHHHHHHhhh--
Q 005697 297 KALQMLDKGDTSCYPVRASAAGAIVGLLEND------YMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANE-- 367 (682)
Q Consensus 297 ~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~------~l~p~l~~llq~Ll~~L~~e~-~e~d~l~~~L~~iVe~~~e-- 367 (682)
+.|.+++ ..||..|+.||.++.... .+...+.+.+-.++. ... .--.....+|..++..+..
T Consensus 348 ~lL~~~~------~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~---~~~~~v~~~a~~aL~~l~~~~~~~~ 418 (530)
T 1wa5_B 348 LLLSSPK------ENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLE---VAEYKTKKEACWAISNASSGGLQRP 418 (530)
T ss_dssp HHTTCSC------HHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH---HSCHHHHHHHHHHHHHHHHHTTTCT
T ss_pred HHHcCCC------HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh---cCCHHHHHHHHHHHHHHHhcCCCcH
Confidence 9998876 899999999999998642 111222222222323 221 1233456667766665443
Q ss_pred hhhchHHHHHHHHHHHHHHhcCCCCCCChhhHHhHHHHHHHHHHhh
Q 005697 368 NVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSW 413 (682)
Q Consensus 368 ~i~P~a~~L~~~L~~~f~k~~~~~~~~~~~~~~~~~~aLa~~~~~~ 413 (682)
+...+... ..++..+..++... + +.+++.++.+|..+....
T Consensus 419 ~~~~~l~~--~~~l~~L~~ll~~~-~--~~v~~~al~aL~~l~~~~ 459 (530)
T 1wa5_B 419 DIIRYLVS--QGCIKPLCDLLEIA-D--NRIIEVTLDALENILKMG 459 (530)
T ss_dssp HHHHHHHH--TTCHHHHHHHTTTC-C--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--CCCHHHHHHHHhCC-C--HHHHHHHHHHHHHHHHhh
Confidence 22222221 12344444554443 2 467777777777666543
No 33
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=96.59 E-value=0.0062 Score=60.34 Aligned_cols=97 Identities=18% Similarity=0.113 Sum_probs=67.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCCh--hh-H-HHHHHHHHH
Q 005697 222 QKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPE--DI-S-ADVYSSLLK 297 (682)
Q Consensus 222 ~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~--~~-l-~~il~~ll~ 297 (682)
...+..|+.+++.++..-.+.....++.-....++..+. ++++-+|..|+|+++.++..-+. +. . ..+++.+++
T Consensus 68 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 145 (252)
T 4db8_A 68 EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS--SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 145 (252)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG--CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHH
Confidence 567888999999887632221111122222334455566 67899999999999999875321 11 1 237889999
Q ss_pred hhccCCCCCCCCcchhHHHHHHHHHhhhc
Q 005697 298 ALQMLDKGDTSCYPVRASAAGAIVGLLEN 326 (682)
Q Consensus 298 ~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~ 326 (682)
.|.+++ ..||..|+.||.++...
T Consensus 146 lL~~~~------~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 146 LLSSPN------EQILQEALWALSNIASG 168 (252)
T ss_dssp GGGCSC------HHHHHHHHHHHHHHTTS
T ss_pred HHhCCC------HHHHHHHHHHHHHHHcC
Confidence 998877 78999999999999875
No 34
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=96.59 E-value=0.062 Score=61.45 Aligned_cols=127 Identities=12% Similarity=-0.023 Sum_probs=87.2
Q ss_pred hhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhcc
Q 005697 222 QKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQM 301 (682)
Q Consensus 222 ~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~d 301 (682)
...++.||.+++.++..-. ..+.+. ...|++.+. ++.+.+|.+|..++..+++ ++++..++..++..+.+
T Consensus 327 ~~vr~~aL~~L~~i~~~~p----~~~~~~-~~~i~~~l~--d~d~~Ir~~alelL~~l~~---~~nv~~iv~eL~~~l~~ 396 (618)
T 1w63_A 327 KNIRYVALTSLLKTVQTDH----NAVQRH-RSTIVDCLK--DLDVSIKRRAMELSFALVN---GNNIRGMMKELLYFLDS 396 (618)
T ss_dssp TTTHHHHHHHHHHHHHHHH----HHHGGG-HHHHHHGGG--SSCHHHHHHHHHHHHHHCC---SSSTHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhhCH----HHHHHH-HHHHHHHcc--CCChhHHHHHHHHHHHHcc---cccHHHHHHHHHHHHHh
Confidence 3459999999998876532 122222 235677888 6889999999999999866 45567788888888887
Q ss_pred CCCCCCCCcchhHHHHHHHHHhhhcCCCCCChHHHHHHHHHhhcccc-hhhhHHHHHHHHHHHHhh
Q 005697 302 LDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAAN 366 (682)
Q Consensus 302 ~~~~~~~~~pVrv~Aa~AL~~~l~~~~l~p~l~~llq~Ll~~L~~e~-~e~d~l~~~L~~iVe~~~ 366 (682)
.+ .-+|..++.||..+... ..|.....+..+++.|.... .-...+..++..++..+.
T Consensus 397 ~d------~e~r~~~v~~I~~la~k--~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p 454 (618)
T 1w63_A 397 CE------PEFKADCASGIFLAAEK--YAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSV 454 (618)
T ss_dssp CC------HHHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSC
T ss_pred CC------HHHHHHHHHHHHHHHHH--hCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCh
Confidence 76 78999999999999873 44555555555555443321 013335556666666554
No 35
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=96.57 E-value=0.12 Score=57.28 Aligned_cols=178 Identities=10% Similarity=0.028 Sum_probs=100.7
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChh--hH--HHHHHHHH
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPED--IS--ADVYSSLL 296 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~--~l--~~il~~ll 296 (682)
++..+..|+.+++.++..-.......++.-+...++..+. ++.+-+|..|+++++.++..-+.. .+ ..+++.++
T Consensus 257 ~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~--~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~ 334 (528)
T 4b8j_A 257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL--HPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLL 334 (528)
T ss_dssp CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHc--CCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHH
Confidence 4667888899999887542211011111112234445566 678899999999999998743211 11 23577888
Q ss_pred HhhccC-CCCCCCCcchhHHHHHHHHHhhhcC------CCCCChHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhhhh
Q 005697 297 KALQML-DKGDTSCYPVRASAAGAIVGLLEND------YMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENV 369 (682)
Q Consensus 297 ~~L~d~-~~~~~~~~pVrv~Aa~AL~~~l~~~------~l~p~l~~llq~Ll~~L~~e~~e~d~l~~~L~~iVe~~~e~i 369 (682)
+.|.++ + ..||..|+.||.++.... .+...+.|.+-.++.. .+. .-......+|..++.....+.
T Consensus 335 ~lL~~~~~------~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~-~v~~~a~~aL~nl~~~~~~~~ 406 (528)
T 4b8j_A 335 SLLTQNLK------KSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQT-AEF-DIKKEAAWAISNATSGGSHDQ 406 (528)
T ss_dssp HHHHSCCC------HHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHH-SCH-HHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHcCCCc------HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhc-CCH-HHHHHHHHHHHHHHcCCCHHH
Confidence 888877 5 789999999999998642 1222222333333331 111 123445667777766544333
Q ss_pred hchHHHHHHHHHHHHHHhcCCCCCCChhhHHhHHHHHHHHHHhh
Q 005697 370 ADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSW 413 (682)
Q Consensus 370 ~P~a~~L~~~L~~~f~k~~~~~~~~~~~~~~~~~~aLa~~~~~~ 413 (682)
..+..+ ...+..+.+++.... +.++..++.+|..+....
T Consensus 407 ~~~l~~--~~~i~~L~~lL~~~d---~~v~~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 407 IKYLVS--EGCIKPLCDLLICPD---IRIVTVCLEGLENILKVG 445 (528)
T ss_dssp HHHHHH--TTCHHHHHHGGGCSC---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH--CCCHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHH
Confidence 332211 233444555554432 366677777776665543
No 36
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=96.53 E-value=0.023 Score=64.63 Aligned_cols=109 Identities=11% Similarity=0.021 Sum_probs=81.9
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHH--HHHHHHHHh
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISA--DVYSSLLKA 298 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~--~il~~ll~~ 298 (682)
|...+..|++++|.+.. +.+.+.+...|...+. +++|++|..|+++++++... .++.+. .+++.+.++
T Consensus 99 n~~ir~~AL~~L~~i~~-------~~~~~~l~~~l~~~L~--d~~~~VRk~A~~al~~i~~~-~p~~~~~~~~~~~l~~l 168 (591)
T 2vgl_B 99 NPLIRALAVRTMGCIRV-------DKITEYLCEPLRKCLK--DEDPYVRKTAAVCVAKLHDI-NAQMVEDQGFLDSLRDL 168 (591)
T ss_dssp SHHHHHHHHHHHHTCCS-------GGGHHHHHHHHHHHSS--CSCHHHHHHHHHHHHHHHHS-SCCCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCh-------HHHHHHHHHHHHHHcC--CCChHHHHHHHHHHHHHHhh-ChhhcccccHHHHHHHH
Confidence 56778888888887641 1233444455666677 79999999999999999884 344554 588999999
Q ss_pred hccCCCCCCCCcchhHHHHHHHHHhhhcCC---CCCChHHHHHHHHHhhc
Q 005697 299 LQMLDKGDTSCYPVRASAAGAIVGLLENDY---MPPEWYPLLQVIVGRIG 345 (682)
Q Consensus 299 L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~~---l~p~l~~llq~Ll~~L~ 345 (682)
|.|++ .-||..|+.||..+..++. ..+..++.+..|++.+.
T Consensus 169 L~d~d------~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~ 212 (591)
T 2vgl_B 169 IADSN------PMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALN 212 (591)
T ss_dssp TSCSC------HHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHH
T ss_pred hCCCC------hhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCC
Confidence 99888 8899999999999988642 45566777777777553
No 37
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=96.40 E-value=0.0085 Score=68.81 Aligned_cols=143 Identities=15% Similarity=0.158 Sum_probs=98.4
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhh-
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKAL- 299 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L- 299 (682)
+...|..++..++.+++. .++ +--+..+.+.-+++ +++|+.|+-|+.++|.++. +++...+.+.+.++|
T Consensus 87 ~~~~Krl~YL~l~~~~~~----~~e-~~~L~iN~l~kDl~--~~n~~ir~lALr~L~~i~~---~e~~~~l~~~v~~~l~ 156 (621)
T 2vgl_A 87 RYTEKQIGYLFISVLVNS----NSE-LIRLINNAIKNDLA--SRNPTFMGLALHCIANVGS---REMAEAFAGEIPKILV 156 (621)
T ss_dssp CHHHHHHHHHHHHHSCCC----CHH-HHHHHHHHHHHHHH--SCCHHHHHHHHHHHHHHCC---HHHHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHccC----CcH-HHHHHHHHHHHhcC--CCCHHHHHHHHHHhhccCC---HHHHHHHHHHHHHHHh
Confidence 566777777777765532 122 33455667778899 8999999999999999865 889999999999999
Q ss_pred -ccCCCCCCCCcchhHHHHHHHHHhhhc-CCCCC--ChHHHHHHHHHhhcccchhhhHH---HHHHHHHHHHhhhhhhch
Q 005697 300 -QMLDKGDTSCYPVRASAAGAIVGLLEN-DYMPP--EWYPLLQVIVGRIGYEDEENSIL---FELLSSVVGAANENVADH 372 (682)
Q Consensus 300 -~d~~~~~~~~~pVrv~Aa~AL~~~l~~-~~l~p--~l~~llq~Ll~~L~~e~~e~d~l---~~~L~~iVe~~~e~i~P~ 372 (682)
.|++ .-||=.|+.|+..+.+. +.+.| .+.+.+..++. +. +...+ +.++..+...-.+...++
T Consensus 157 ~~d~~------~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~---d~--d~~V~~~a~~~l~~i~~~~~~~~~~~ 225 (621)
T 2vgl_A 157 AGDTM------DSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLN---DQ--HLGVVTAATSLITTLAQKNPEEFKTS 225 (621)
T ss_dssp CSSSC------HHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTT---CS--CHHHHHHHHHHHHHHHHHCHHHHTTH
T ss_pred CCCCC------HHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhC---CC--CccHHHHHHHHHHHHHHhChHHHHHH
Confidence 7777 89999999999999885 23333 56555555532 22 33333 334455555444556666
Q ss_pred HHHHHHHHHHHH
Q 005697 373 IPYIVSSLVAAI 384 (682)
Q Consensus 373 a~~L~~~L~~~f 384 (682)
.+.+++.|.+.+
T Consensus 226 ~~~~~~~L~~ll 237 (621)
T 2vgl_A 226 VSLAVSRLSRIV 237 (621)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 676666665543
No 38
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.24 E-value=0.027 Score=54.04 Aligned_cols=172 Identities=15% Similarity=0.107 Sum_probs=96.6
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCCh--hhH--HHHHHHHH
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPE--DIS--ADVYSSLL 296 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~--~~l--~~il~~ll 296 (682)
++..+..|+.+++.++..-.+.....++.-....++..+. ++++-+|..|+|+++.++..-+. +.+ ...++.++
T Consensus 25 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~ 102 (210)
T 4db6_A 25 DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS--SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV 102 (210)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHH
Confidence 5677889999999887432211111122222334455566 67899999999999999753211 111 22578889
Q ss_pred HhhccCCCCCCCCcchhHHHHHHHHHhhhcC------CCCCChHHHHHHHHHhhcccc-hhhhHHHHHHHHHHHHhhhhh
Q 005697 297 KALQMLDKGDTSCYPVRASAAGAIVGLLEND------YMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANENV 369 (682)
Q Consensus 297 ~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~------~l~p~l~~llq~Ll~~L~~e~-~e~d~l~~~L~~iVe~~~e~i 369 (682)
+.|.+++ ..||..|+.||.++..+. .+.. ..+..|++.+.... .-......+|..++....+..
T Consensus 103 ~lL~~~~------~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~ 173 (210)
T 4db6_A 103 QLLSSPN------EQILQEALWALSNIASGGNEQIQAVIDA---GALPALVQLLSSPNEQILQEALWALSNIASGGNEQK 173 (210)
T ss_dssp HHTTCSC------HHHHHHHHHHHHHHTTSCHHHHHHHHHT---THHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHcCCc------HHHHHHHHHHHHHHHcCCHHHHHHHHHc---CcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHH
Confidence 9998887 899999999999998642 1111 24455555444332 113334555555554322221
Q ss_pred hchHHHHHHHHHHHHHHhcCCCCCCChhhHHhHHHHHHHH
Q 005697 370 ADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALM 409 (682)
Q Consensus 370 ~P~a~~L~~~L~~~f~k~~~~~~~~~~~~~~~~~~aLa~~ 409 (682)
... +-...+..+.+++.+.. +.+.+.+..+|+.+
T Consensus 174 ~~~---~~~g~i~~L~~ll~~~~---~~v~~~a~~aL~~l 207 (210)
T 4db6_A 174 QAV---KEAGALEKLEQLQSHEN---EKIQKEAQEALEKL 207 (210)
T ss_dssp HHH---HHTTHHHHHHHGGGCSC---HHHHHHHHHHHHHH
T ss_pred HHH---HHCCCHHHHHHHHhCCC---HHHHHHHHHHHHHH
Confidence 111 11123334444444322 35666666666544
No 39
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=96.05 E-value=0.21 Score=48.57 Aligned_cols=218 Identities=13% Similarity=0.064 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHhhhHH-HHHHHHHHHHHhccccccCcccCHHHHHHHHHHHHHHhccCc-ccccc-cc-
Q 005697 21 FKTGKRGLLIFSALVTRHRKFSDKLMP-DIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGP-GWRLV-SP- 96 (682)
Q Consensus 21 ~K~kKw~~~~l~~l~~Ry~~~~~~f~p-~il~~~l~~l~~~~~~~~~~~lsd~~i~~~~~fl~~~v~~~~-~~~ll-~p- 96 (682)
...+..+...+..+........+.+.. .+++...+++... .+.+...+...|..+....+ ....+ +.
T Consensus 16 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~---------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 86 (252)
T 4hxt_A 16 SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST---------DSEVQKEAARALANIASGPDEAIKAIVDAG 86 (252)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS---------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC---------CHHHHHHHHHHHHHHHcCChHHHHHHHHCC
Confidence 577889999999998776544444333 4666666666641 26778888888888876522 11111 11
Q ss_pred cHHHHHHHHhhccccCChhhhhhhhhCHHHHHHhcCCCchhhhccccccccchhHHHHHHHHHHhhcCCCCCCCCCCCcc
Q 005697 97 HFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSNCSS 176 (682)
Q Consensus 97 ~l~~Li~~vIfP~l~~teeD~Elwe~DP~EYIr~~~d~~~~~~~~~~ed~~S~R~aA~~lL~~L~~~~~~~~~~~~~~~~ 176 (682)
.++.++. -+.. +....|..|...|..|
T Consensus 87 ~i~~l~~---------------------------ll~~----------~~~~v~~~a~~~L~~l---------------- 113 (252)
T 4hxt_A 87 GVEVLVK---------------------------LLTS----------TDSEVQKEAARALANI---------------- 113 (252)
T ss_dssp HHHHHHH---------------------------HTTC----------SSHHHHHHHHHHHHHH----------------
T ss_pred CHHHHHH---------------------------HHcC----------CCHHHHHHHHHHHHHH----------------
Confidence 1222211 1110 1124688889999987
Q ss_pred cccccccccccccccccchhhHHHHHHHHhcCCCCCCCCCccccchhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhh
Q 005697 177 VSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVL 256 (682)
Q Consensus 177 ~~~kr~k~~~~k~~~~~~~l~~ili~~~L~~~~~~~~~~~~~~~~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~Vl 256 (682)
+...... +.. ......++. +.+++.. .++..+..|+.+++.++..-.......++.-....++
T Consensus 114 -~~~~~~~-~~~-~~~~~~i~~--L~~~l~~------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 176 (252)
T 4hxt_A 114 -ASGPDEA-IKA-IVDAGGVEV--LVKLLTS------------TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLV 176 (252)
T ss_dssp -TTSCHHH-HHH-HHHTTHHHH--HHHHTTC------------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred -HcCCHHH-HHH-HHHCCCHHH--HHHHHcC------------CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHH
Confidence 2111110 000 000002221 2334431 1466788999999988754221111112222233444
Q ss_pred hcccCCCCCcccHHHHHHHHHHhhhcCChhhH-----HHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhc
Q 005697 257 PLYSVSVCLPYLVASANWILGELASCLPEDIS-----ADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 326 (682)
Q Consensus 257 P~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l-----~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~ 326 (682)
..+. ++.+-+|..|+|+++.++.. +++.. ..+++.+++.+.+++ ..||..|+.||.++..+
T Consensus 177 ~ll~--~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~i~~L~~ll~~~~------~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 177 KLLT--STDSEVQKEAARALANIASG-PTSAIKAIVDAGGVEVLQKLLTSTD------SEVQKEAQRALENIKSG 242 (252)
T ss_dssp HHTT--CSCHHHHHHHHHHHHHHTTS-BHHHHHHHHHTTHHHHHHHGGGCSC------HHHHHHHHHHHHHHHHT
T ss_pred HHHC--CCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHCCCc------HHHHHHHHHHHHHHHcC
Confidence 5566 67899999999999999863 22222 235788888898877 79999999999999886
No 40
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=95.99 E-value=0.88 Score=51.79 Aligned_cols=90 Identities=16% Similarity=0.046 Sum_probs=68.5
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhc
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQ 300 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~ 300 (682)
+...|.-++..+..+++. .+-+--+..+.+.-+++ +++|+.|+-|++++|.++. ++....+++.+.++|.
T Consensus 83 ~~~~Krl~Yl~~~~~~~~-----~~e~~~l~in~l~kDL~--~~n~~vr~lAL~~L~~i~~---~~~~~~l~~~l~~~L~ 152 (618)
T 1w63_A 83 KFTDKRIGYLGAMLLLDE-----RQDVHLLMTNCIKNDLN--HSTQFVQGLALCTLGCMGS---SEMCRDLAGEVEKLLK 152 (618)
T ss_dssp SHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHHHS--CSSSHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHhcC--CCCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHc
Confidence 455566555554443321 22233455666677888 8999999999999999974 7788899999999999
Q ss_pred cCCCCCCCCcchhHHHHHHHHHhhhc
Q 005697 301 MLDKGDTSCYPVRASAAGAIVGLLEN 326 (682)
Q Consensus 301 d~~~~~~~~~pVrv~Aa~AL~~~l~~ 326 (682)
+++ .-||-.|+.|+..+...
T Consensus 153 ~~~------~~VRk~A~~al~~l~~~ 172 (618)
T 1w63_A 153 TSN------SYLRKKAALCAVHVIRK 172 (618)
T ss_dssp SCC------HHHHHHHHHHHHHHHHH
T ss_pred CCC------HHHHHHHHHHHHHHHHH
Confidence 988 89999999999999874
No 41
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=95.95 E-value=0.086 Score=59.82 Aligned_cols=122 Identities=15% Similarity=0.060 Sum_probs=85.7
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhc
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQ 300 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~ 300 (682)
+...|..++.+++.+++.- .+ +..+..+.+..+++ +++|+.|+.|..+++.++ .++....+++.+.++|.
T Consensus 62 ~~~~Krl~yl~l~~~~~~~----~e-~~~l~~n~l~kdL~--~~n~~ir~~AL~~L~~i~---~~~~~~~l~~~l~~~L~ 131 (591)
T 2vgl_B 62 NLELKKLVYLYLMNYAKSQ----PD-MAIMAVNSFVKDCE--DPNPLIRALAVRTMGCIR---VDKITEYLCEPLRKCLK 131 (591)
T ss_dssp CHHHHHHHHHHHHHHHHHS----HH-HHHTTHHHHGGGSS--SSSHHHHHHHHHHHHTCC---SGGGHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHHHcccC----ch-HHHHHHHHHHHHcC--CCCHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHcC
Confidence 5667888887777765531 22 22344566677888 799999999998887775 68888889999999999
Q ss_pred cCCCCCCCCcchhHHHHHHHHHhhhcCCCCCC-hH--HHHHHHHHhhcccchhhhHHHHHHHHHHH
Q 005697 301 MLDKGDTSCYPVRASAAGAIVGLLENDYMPPE-WY--PLLQVIVGRIGYEDEENSILFELLSSVVG 363 (682)
Q Consensus 301 d~~~~~~~~~pVrv~Aa~AL~~~l~~~~l~p~-l~--~llq~Ll~~L~~e~~e~d~l~~~L~~iVe 363 (682)
|++ .-||-.|+.|+..+.+.. |. ++ +++..+...|... +......++..+.+
T Consensus 132 d~~------~~VRk~A~~al~~i~~~~---p~~~~~~~~~~~l~~lL~d~--d~~V~~~A~~aL~~ 186 (591)
T 2vgl_B 132 DED------PYVRKTAAVCVAKLHDIN---AQMVEDQGFLDSLRDLIADS--NPMVVANAVAALSE 186 (591)
T ss_dssp CSC------HHHHHHHHHHHHHHHHSS---CCCHHHHHHHHHHHHTTSCS--CHHHHHHHHHHHHH
T ss_pred CCC------hHHHHHHHHHHHHHHhhC---hhhcccccHHHHHHHHhCCC--ChhHHHHHHHHHHH
Confidence 887 899999999999998842 22 22 3667777744332 33444444444433
No 42
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=95.84 E-value=0.92 Score=54.96 Aligned_cols=143 Identities=10% Similarity=0.087 Sum_probs=99.3
Q ss_pred CCcccHHHHHHHHHHhhhcCCh----hhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhc-CCCCCChHHHHH
Q 005697 264 CLPYLVASANWILGELASCLPE----DISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN-DYMPPEWYPLLQ 338 (682)
Q Consensus 264 ~~p~LrarA~~~l~~f~~~l~~----~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~-~~l~p~l~~llq 338 (682)
++---|-+|||++|..++.+++ ..+.++++.+++.+.+.. +......||-.++..|+++.+- ..=+.+++++++
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~-~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~ 543 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKR-GKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVIL 543 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCC-SHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccc-cCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 4456788899999999998654 356778888887775311 0001267888888999887662 111346899999
Q ss_pred HHHHhhcccc-hhhhHHHHHHHHHHHHhhhhh--------hchHHHHHHHHHHHHHHhcCCCCCCChhhHHhHHHHHHHH
Q 005697 339 VIVGRIGYED-EENSILFELLSSVVGAANENV--------ADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALM 409 (682)
Q Consensus 339 ~Ll~~L~~e~-~e~d~l~~~L~~iVe~~~e~i--------~P~a~~L~~~L~~~f~k~~~~~~~~~~~~~~~~~~aLa~~ 409 (682)
.|+..+.... .-.+....++..+++..++++ .||..+|.+.+..++.++ + ++-.+.++++++.+
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l-----~--~~~~~~lyeai~~v 616 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADL-----Q--PQQVHTFYKACGII 616 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTS-----C--HHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhC-----C--HHHHHHHHHHHHHH
Confidence 9999774432 125566888999999888776 589999998888877432 2 34556778888888
Q ss_pred HHhhh
Q 005697 410 AQSWE 414 (682)
Q Consensus 410 ~~~~~ 414 (682)
.++..
T Consensus 617 i~~~~ 621 (1023)
T 4hat_C 617 ISEER 621 (1023)
T ss_dssp HTTCC
T ss_pred HHhCC
Confidence 77653
No 43
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=95.70 E-value=0.084 Score=54.81 Aligned_cols=97 Identities=14% Similarity=0.116 Sum_probs=64.3
Q ss_pred hhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCC--hhhH--HHHHHHHHH
Q 005697 222 QKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLP--EDIS--ADVYSSLLK 297 (682)
Q Consensus 222 ~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~--~~~l--~~il~~ll~ 297 (682)
...+..|+.+++++...-......++..-....+...++ ++.+-+|.+|||+++.++..-+ .+.+ ..+++.++.
T Consensus 139 ~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~--~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~ 216 (296)
T 1xqr_A 139 DTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ--QQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVA 216 (296)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH--SSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHH
Confidence 455788889999876432110011111111223334456 6789999999999999987522 1122 236778888
Q ss_pred hhccCCCCCCCCcchhHHHHHHHHHhhhc
Q 005697 298 ALQMLDKGDTSCYPVRASAAGAIVGLLEN 326 (682)
Q Consensus 298 ~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~ 326 (682)
.|..++ ..||..|+.||.+++..
T Consensus 217 LL~~~d------~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 217 LVRTEH------SPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHTSCC------STHHHHHHHHHHHHHTT
T ss_pred HHcCCC------hhHHHHHHHHHHHHHhC
Confidence 898887 88999999999999875
No 44
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=95.66 E-value=0.32 Score=58.75 Aligned_cols=178 Identities=12% Similarity=0.028 Sum_probs=111.2
Q ss_pred cHHHHHHHHHHhhhcCCh---------hhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhc-CCCCCChHHHH
Q 005697 268 LVASANWILGELASCLPE---------DISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN-DYMPPEWYPLL 337 (682)
Q Consensus 268 LrarA~~~l~~f~~~l~~---------~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~-~~l~p~l~~ll 337 (682)
-+-.|+.+++.+++.+.. +.+.++++.+.+.+...- .....+.||..++..+.++.+- ..=+.++++++
T Consensus 459 ~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i-~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L 537 (980)
T 3ibv_A 459 LIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQV-CRHPHPLVQLLYMEILVRYASFFDYESAAIPALI 537 (980)
T ss_dssp HHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSST-TTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHH
T ss_pred HHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCC-CCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Confidence 344667888999986432 234456666666655111 0011278999999999998763 22246799999
Q ss_pred HHHHH--hhcccc-hhhhHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHhcCCCCCCChhhHHhHHHHHHHHHHhhh
Q 005697 338 QVIVG--RIGYED-EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWE 414 (682)
Q Consensus 338 q~Ll~--~L~~e~-~e~d~l~~~L~~iVe~~~e~i~P~a~~L~~~L~~~f~k~~~~~~~~~~~~~~~~~~aLa~~~~~~~ 414 (682)
+.++. .+.+.. .-......++.++++..+..+.||+..|.+++...+..... +.+. . +
T Consensus 538 ~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~-~~~~--~----------------~ 598 (980)
T 3ibv_A 538 EYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVS-PVTD--M----------------D 598 (980)
T ss_dssp HHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCC-CCCC--------------------
T ss_pred HHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCC-CCCc--c----------------c
Confidence 99988 776543 13556788999999999999999999998887665532111 1110 0 0
Q ss_pred hhch--hhhhhhccCCccchhHhHHHHHHHHHHHhhhhhcccccccccC-CCcchHHhHHHHHHHHHhhc
Q 005697 415 NFLR--EEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVS-APPSCIDDSSMLLRSIILSV 481 (682)
Q Consensus 415 ~~~~--~~~~~~~~~d~~~~~~~a~L~ti~tllq~~~~~~~~e~~~s~~-~~~~~~~~le~~l~~vi~~i 481 (682)
..++ ++.+. + ..-+.+..+.+++++++. ... |.......++.++.|+++-.
T Consensus 599 ~~~~~~~~~~~-~---~~~~~ql~L~eaig~li~------------~~~~~~e~~~~~l~~ll~pl~~~l 652 (980)
T 3ibv_A 599 APVPTLNSSIR-N---SDFNSQLYLFETVGVLIS------------SGNLTPEEQALYCDSLINALIGKA 652 (980)
T ss_dssp CSSCCHHHHHH-T---TTHHHHHHHHHHHHHHHH------------HSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhcc-c---CCchHHHHHHHHHHHHHh------------CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 0000 11000 0 012346779999999994 332 33356777888888877764
No 45
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=95.31 E-value=0.076 Score=51.88 Aligned_cols=176 Identities=15% Similarity=0.076 Sum_probs=101.4
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCCh--hhH--HHHHHHHH
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPE--DIS--ADVYSSLL 296 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~--~~l--~~il~~ll 296 (682)
+...++.|+.+++.++..-.+.....++.-....++..+. ++.+-+|..|+|+++.++..-+. +.+ ...++.++
T Consensus 57 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 134 (252)
T 4hxt_A 57 DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT--STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLV 134 (252)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT--CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH
Confidence 3567888999999887542111111112222234445566 67899999999999999863211 111 24688889
Q ss_pred HhhccCCCCCCCCcchhHHHHHHHHHhhhcC------CCCCChHHHHHHHHHhhcccc-hhhhHHHHHHHHHHHHhhhhh
Q 005697 297 KALQMLDKGDTSCYPVRASAAGAIVGLLEND------YMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANENV 369 (682)
Q Consensus 297 ~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~------~l~p~l~~llq~Ll~~L~~e~-~e~d~l~~~L~~iVe~~~e~i 369 (682)
+.|.+++ ..||..|+.+|.++.... .+.. ..+..|++.+.... .-......+|..+.....+..
T Consensus 135 ~~l~~~~------~~~~~~a~~~L~~l~~~~~~~~~~~~~~---~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 205 (252)
T 4hxt_A 135 KLLTSTD------SEVQKEAARALANIASGPDEAIKAIVDA---GGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAI 205 (252)
T ss_dssp HHTTCSC------HHHHHHHHHHHHHHTTSCHHHHHHHHHT---THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHH
T ss_pred HHHcCCC------HHHHHHHHHHHHHHHcCCHHHHHHHHHC---cCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 9998877 789999999999998742 1111 24455555444332 112233445555443222211
Q ss_pred hchHHHHHHHHHHHHHHhcCCCCCCChhhHHhHHHHHHHHHHhh
Q 005697 370 ADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSW 413 (682)
Q Consensus 370 ~P~a~~L~~~L~~~f~k~~~~~~~~~~~~~~~~~~aLa~~~~~~ 413 (682)
... +-...+..+.+++.+.. +.+.+.+..+|+.+....
T Consensus 206 ~~l---~~~~~i~~L~~ll~~~~---~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 206 KAI---VDAGGVEVLQKLLTSTD---SEVQKEAQRALENIKSGG 243 (252)
T ss_dssp HHH---HHTTHHHHHHHGGGCSC---HHHHHHHHHHHHHHHHTC
T ss_pred HHH---HHCCCHHHHHHHHCCCc---HHHHHHHHHHHHHHHcCC
Confidence 111 11223445555555432 468888888887776643
No 46
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=95.04 E-value=0.087 Score=50.38 Aligned_cols=97 Identities=16% Similarity=0.100 Sum_probs=66.9
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhH-----HHHHHHH
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDIS-----ADVYSSL 295 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l-----~~il~~l 295 (682)
+...++.|+.+++.++..-.+.....++.-....++..+. ++++-+|..|+|+++.++..- ++.. ..+++.+
T Consensus 67 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L 143 (210)
T 4db6_A 67 NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS--SPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPAL 143 (210)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHc--CCcHHHHHHHHHHHHHHHcCC-HHHHHHHHHcCcHHHH
Confidence 4567889999999987432211111111112233445566 678999999999999998642 2221 3467888
Q ss_pred HHhhccCCCCCCCCcchhHHHHHHHHHhhhc
Q 005697 296 LKALQMLDKGDTSCYPVRASAAGAIVGLLEN 326 (682)
Q Consensus 296 l~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~ 326 (682)
++.|.+++ .-||..|+.||.+++.+
T Consensus 144 ~~ll~~~~------~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 144 VQLLSSPN------EQILQEALWALSNIASG 168 (210)
T ss_dssp HHHTTCSC------HHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCC------HHHHHHHHHHHHHHHcC
Confidence 99998876 78999999999999875
No 47
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=94.96 E-value=0.3 Score=47.93 Aligned_cols=175 Identities=14% Similarity=0.121 Sum_probs=95.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCC--hhhHH--HHHHHHHH
Q 005697 222 QKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLP--EDISA--DVYSSLLK 297 (682)
Q Consensus 222 ~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~--~~~l~--~il~~ll~ 297 (682)
...+..|..++..+...-.......++.-....++..++ ++++-+|..|+|+++.++..-+ .+.+. ..++.+++
T Consensus 26 ~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ 103 (252)
T 4db8_A 26 MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLS--SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 103 (252)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGG--CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHH
Confidence 344666666665443331111111222222334455566 6779999999999999986421 12222 27888999
Q ss_pred hhccCCCCCCCCcchhHHHHHHHHHhhhcCCCC-CCh--HHHHHHHHHhhcccc-hhhhHHHHHHHHHHHHhhhhhhchH
Q 005697 298 ALQMLDKGDTSCYPVRASAAGAIVGLLENDYMP-PEW--YPLLQVIVGRIGYED-EENSILFELLSSVVGAANENVADHI 373 (682)
Q Consensus 298 ~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~~l~-p~l--~~llq~Ll~~L~~e~-~e~d~l~~~L~~iVe~~~e~i~P~a 373 (682)
.|.+++ ..||..|+.||.++..++..+ ..+ ...+..|++.|.... .-......+|..+.....+.....
T Consensus 104 lL~~~~------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~- 176 (252)
T 4db8_A 104 LLSSPN------EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV- 176 (252)
T ss_dssp GGGCSC------HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH-
T ss_pred HHcCCC------HHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH-
Confidence 999877 799999999999998764211 111 124556666444432 112223444444443222221111
Q ss_pred HHHHHHHHHHHHHhcCCCCCCChhhHHhHHHHHHHHH
Q 005697 374 PYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMA 410 (682)
Q Consensus 374 ~~L~~~L~~~f~k~~~~~~~~~~~~~~~~~~aLa~~~ 410 (682)
+-...+..+.+++.+.. +.+.+.+..+|+.++
T Consensus 177 --~~~~~i~~L~~ll~~~~---~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 177 --IDAGALPALVQLLSSPN---EQILQEALWALSNIA 208 (252)
T ss_dssp --HHTTCHHHHHHGGGCSS---HHHHHHHHHHHHHHT
T ss_pred --HHCCCHHHHHHHHCCCC---HHHHHHHHHHHHHHh
Confidence 11223344445554442 467777777777665
No 48
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=94.83 E-value=0.24 Score=60.14 Aligned_cols=153 Identities=11% Similarity=0.084 Sum_probs=101.3
Q ss_pred HHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChh----hHHHHHHHHHHhhc-----cCCCCCCCCcchhHHHHHH
Q 005697 249 NLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPED----ISADVYSSLLKALQ-----MLDKGDTSCYPVRASAAGA 319 (682)
Q Consensus 249 ~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~----~l~~il~~ll~~L~-----d~~~~~~~~~pVrv~Aa~A 319 (682)
+++.+.+-..++.+..+.--|-.|||.+|..++.+... .+.++++.+++... +++ +.||..++.+
T Consensus 450 ~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~------~~v~~~~~~~ 523 (1049)
T 3m1i_C 450 EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNK------AVVASDIMYV 523 (1049)
T ss_dssp HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHH------HHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccch------HHHHHHHHHH
Confidence 44444433334321244456888999999998875432 36677777666332 222 5667678888
Q ss_pred HHHhhhc-CCCCCChHHHHHHHHHhhcccc-hhhhHHHHHHHHHHHHhhhhhh--------chHHHHHHHHHHHHHHhcC
Q 005697 320 IVGLLEN-DYMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANENVA--------DHIPYIVSSLVAAISKHMH 389 (682)
Q Consensus 320 L~~~l~~-~~l~p~l~~llq~Ll~~L~~e~-~e~d~l~~~L~~iVe~~~e~i~--------P~a~~L~~~L~~~f~k~~~ 389 (682)
+.++.+. ..-+.+++++++.++..|.+.. .=......++.++++..+..+. ||.+.|++++...+.+
T Consensus 524 lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~--- 600 (1049)
T 3m1i_C 524 VGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTAD--- 600 (1049)
T ss_dssp HHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTT---
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHh---
Confidence 8877652 1113578999999998665532 1244567889999998888775 9999999999877643
Q ss_pred CCCCCChhhHHhHHHHHHHHHHhhh
Q 005697 390 PSSEPWPQVVERGFAALALMAQSWE 414 (682)
Q Consensus 390 ~~~~~~~~~~~~~~~aLa~~~~~~~ 414 (682)
. + .+-....+++++.++.+.+
T Consensus 601 -~-~--~~~~~~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 601 -L-Q--PQQVHTFYKACGIIISEER 621 (1049)
T ss_dssp -S-C--HHHHHHHHHHHHHHHHTCC
T ss_pred -C-C--HHHHHHHHHHHHHHHHcCC
Confidence 2 1 2445678899999887653
No 49
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=94.59 E-value=0.35 Score=50.06 Aligned_cols=141 Identities=16% Similarity=0.122 Sum_probs=82.8
Q ss_pred hhhh-cccCCCCCcccHHHHHHHHHHhhhcCC--hhhHH--HHHHHHHHhhcc-CCCCCCCCcchhHHHHHHHHHhhhcC
Q 005697 254 RVLP-LYSVSVCLPYLVASANWILGELASCLP--EDISA--DVYSSLLKALQM-LDKGDTSCYPVRASAAGAIVGLLEND 327 (682)
Q Consensus 254 ~VlP-~l~~~s~~p~LrarA~~~l~~f~~~l~--~~~l~--~il~~ll~~L~d-~~~~~~~~~pVrv~Aa~AL~~~l~~~ 327 (682)
.+++ .|. ++++-+|..|+|++|..+..-+ .+.+. ..++.+++.|.. ++ ..||..|+.||.+++.+.
T Consensus 85 ~Lv~~lL~--s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~------~~v~~~A~~ALsnl~~~~ 156 (296)
T 1xqr_A 85 LLVGRYLE--AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDAC------DTVRVKALFAISCLVREQ 156 (296)
T ss_dssp HHHHTTTT--CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSC------HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHc--CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCC------HHHHHHHHHHHHHHHcCC
Confidence 3445 677 7899999999999999976422 12222 467788888875 34 789999999999999752
Q ss_pred ------CCCCChHHHHHHHHHhhcccc-hhhhHHHHHHHHHHHHhhhhhhchH-HHHHHHHHHHHHHhcCCCCCCChhhH
Q 005697 328 ------YMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANENVADHI-PYIVSSLVAAISKHMHPSSEPWPQVV 399 (682)
Q Consensus 328 ------~l~p~l~~llq~Ll~~L~~e~-~e~d~l~~~L~~iVe~~~e~i~P~a-~~L~~~L~~~f~k~~~~~~~~~~~~~ 399 (682)
.+.....+.+-.+++ +.. .-......+|..+.....+.+.-.. ...++.|+.. +..+. +++.
T Consensus 157 ~~~~~~~~~~ggi~~L~~lL~---~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~L----L~~~d---~~v~ 226 (296)
T 1xqr_A 157 EAGLLQFLRLDGFSVLMRAMQ---QQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVAL----VRTEH---SPFH 226 (296)
T ss_dssp HHHHHHHHHTTHHHHHHHHHH---SSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHH----HTSCC---STHH
T ss_pred cHHHHHHHHCCCHHHHHHHHc---CCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHH----HcCCC---hhHH
Confidence 111222233333333 322 1123345566666655333322211 2244444443 33332 3688
Q ss_pred HhHHHHHHHHHHh
Q 005697 400 ERGFAALALMAQS 412 (682)
Q Consensus 400 ~~~~~aLa~~~~~ 412 (682)
+.++.+|+.++..
T Consensus 227 ~~al~aL~~l~~~ 239 (296)
T 1xqr_A 227 EHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC
Confidence 8888888777764
No 50
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=93.74 E-value=0.59 Score=44.29 Aligned_cols=79 Identities=22% Similarity=0.110 Sum_probs=58.2
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhc
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQ 300 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~ 300 (682)
++..+..|+.++|.+.+. +.++ .++..+. ++++.+|..|++.++++.. + ..++.+++.|.
T Consensus 27 ~~~vr~~A~~~L~~~~~~------~~~~-----~L~~~l~--~~~~~vr~~a~~~L~~~~~---~----~~~~~L~~~l~ 86 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDE------RAVE-----PLIKALK--DEDAWVRRAAADALGQIGD---E----RAVEPLIKALK 86 (201)
T ss_dssp CHHHHHHHHHHHHHHCCG------GGHH-----HHHHHTT--CSSHHHHHHHHHHHHHHCC---G----GGHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhcCCh------hHHH-----HHHHHHc--CCCHHHHHHHHHHHHhhCC---H----HHHHHHHHHHc
Confidence 577889999998875431 1222 2234456 6889999999999999864 2 34566777888
Q ss_pred cCCCCCCCCcchhHHHHHHHHHhhh
Q 005697 301 MLDKGDTSCYPVRASAAGAIVGLLE 325 (682)
Q Consensus 301 d~~~~~~~~~pVrv~Aa~AL~~~l~ 325 (682)
+++ .-||..|+.||..+-.
T Consensus 87 d~~------~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 87 DED------GWVRQSAAVALGQIGD 105 (201)
T ss_dssp CSS------HHHHHHHHHHHHHHCC
T ss_pred CCC------HHHHHHHHHHHHHhCc
Confidence 877 7899999999998754
No 51
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=93.52 E-value=0.53 Score=45.03 Aligned_cols=139 Identities=17% Similarity=0.097 Sum_probs=82.4
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhc
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQ 300 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~ 300 (682)
++..+..|+.++|.+.+. +.+.. ++..+. ++++.+|..|++.++++.. + ..++.+++.|.
T Consensus 32 ~~~vR~~A~~~L~~~~~~------~~~~~-----L~~~l~--~~~~~vr~~a~~aL~~~~~---~----~~~~~L~~~l~ 91 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDE------RAVEP-----LIKALK--DEDAWVRRAAADALGQIGD---E----RAVEPLIKALK 91 (211)
T ss_dssp SHHHHHHHHHHHHHHCCG------GGHHH-----HHHHTT--CSCHHHHHHHHHHHHHHCC---G----GGHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCCc------cHHHH-----HHHHHc--CCCHHHHHHHHHHHHhhCC---H----HHHHHHHHHHc
Confidence 577788888888875431 12222 234456 6789999999999999864 2 34566677888
Q ss_pred cCCCCCCCCcchhHHHHHHHHHhhhcCCCCCChHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhhhhhchHHHHHHHH
Q 005697 301 MLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSL 380 (682)
Q Consensus 301 d~~~~~~~~~pVrv~Aa~AL~~~l~~~~l~p~l~~llq~Ll~~L~~e~~e~d~l~~~L~~iVe~~~e~i~P~a~~L~~~L 380 (682)
+++ .-||..|+.+|..+-. + ..+..|.+.+.++ +.+.-..++..+-....++..
T Consensus 92 ~~~------~~vr~~a~~aL~~~~~-----~---~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~~~~~---------- 145 (211)
T 3ltm_A 92 DED------GWVRQSAAVALGQIGD-----E---RAVEPLIKALKDE--DWFVRIAAAFALGEIGDERAV---------- 145 (211)
T ss_dssp CSS------HHHHHHHHHHHHHHCC-----G---GGHHHHHHHTTCS--SHHHHHHHHHHHHHHCCGGGH----------
T ss_pred CCC------HHHHHHHHHHHHHhCc-----H---HHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCHHHH----------
Confidence 877 7899999999998754 2 2233444434332 233334444444333333222
Q ss_pred HHHHHHhcCCCCCCChhhHHhHHHHHHHH
Q 005697 381 VAAISKHMHPSSEPWPQVVERGFAALALM 409 (682)
Q Consensus 381 ~~~f~k~~~~~~~~~~~~~~~~~~aLa~~ 409 (682)
..+.+.+.++. +.+...+..+|+.+
T Consensus 146 -~~L~~~l~d~~---~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 146 -EPLIKALKDED---GWVRQSAADALGEI 170 (211)
T ss_dssp -HHHHHHTTCSS---HHHHHHHHHHHHHH
T ss_pred -HHHHHHHcCCC---HHHHHHHHHHHHHh
Confidence 22333444332 46777777777654
No 52
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=93.43 E-value=0.83 Score=52.16 Aligned_cols=106 Identities=13% Similarity=0.011 Sum_probs=73.5
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcc--cCCCCCcccHHHHHHHHHHhhhcCChhhHH--HHHHHHH
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLY--SVSVCLPYLVASANWILGELASCLPEDISA--DVYSSLL 296 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l--~~~s~~p~LrarA~~~l~~f~~~l~~~~l~--~il~~ll 296 (682)
|...+-.||+++|.+... .+-+-+...|...+ . +++|++|.+|+.++.++.. .+|+.+. .+++.+.
T Consensus 124 n~~ir~lALr~L~~i~~~-------e~~~~l~~~v~~~l~~~--d~~~~VRK~A~~al~kl~~-~~p~~~~~~~~~~~l~ 193 (621)
T 2vgl_A 124 NPTFMGLALHCIANVGSR-------EMAEAFAGEIPKILVAG--DTMDSVKQSAALCLLRLYR-TSPDLVPMGDWTSRVV 193 (621)
T ss_dssp CHHHHHHHHHHHHHHCCH-------HHHHHHTTHHHHHHHCS--SSCHHHHHHHHHHHHHHHH-HCGGGCCCCSCHHHHH
T ss_pred CHHHHHHHHHHhhccCCH-------HHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHH-hChhhcCchhHHHHHH
Confidence 566678888888886432 12233334555556 5 7899999999999999887 3344444 6778888
Q ss_pred HhhccCCCCCCCCcchhHHHHHHHHHhhhcC--CCCCChHHHHHHHHH
Q 005697 297 KALQMLDKGDTSCYPVRASAAGAIVGLLEND--YMPPEWYPLLQVIVG 342 (682)
Q Consensus 297 ~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~--~l~p~l~~llq~Ll~ 342 (682)
++|.|++ .-|+..|..++..++.++ .+.+.++.+++.|-+
T Consensus 194 ~lL~d~d------~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ 235 (621)
T 2vgl_A 194 HLLNDQH------LGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSR 235 (621)
T ss_dssp HHTTCSC------HHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHH
T ss_pred HHhCCCC------ccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 8888887 789999999999988753 344555554444433
No 53
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=93.30 E-value=4.9 Score=44.11 Aligned_cols=91 Identities=11% Similarity=0.103 Sum_probs=70.1
Q ss_pred CCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhcCCCCCChHHHHHHHHHh
Q 005697 264 CLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGR 343 (682)
Q Consensus 264 ~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~~l~p~l~~llq~Ll~~ 343 (682)
..+=.+.-|.-++.+|-..|| +.-.+.+++.+....|.| .-||+.|.++|-.||.+ -+++.+...|.+.
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP-~l~~~Ai~a~lDLcEDed------~~IR~qaik~Lp~~ck~----~~i~kiaDvL~Ql 108 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFP-ELADSAINAQLDLCEDED------VSIRRQAIKELPQFATG----ENLPRVADILTQL 108 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCG-GGHHHHHHHHHHHHTCSS------HHHHHHHHHHGGGGCCT----TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhCh-hhHHHHHHHHHHHHhccc------HHHHHHHHHhhHHHhhh----hhhhhHHHHHHHH
Confidence 456677777778888877664 477788899999999988 88999999999999987 4577777778885
Q ss_pred hcccc-hhhhHHHHHHHHHHHHh
Q 005697 344 IGYED-EENSILFELLSSVVGAA 365 (682)
Q Consensus 344 L~~e~-~e~d~l~~~L~~iVe~~ 365 (682)
|..+. .|.+.+-++|.++...-
T Consensus 109 Lqtdd~~E~~~V~~sL~sllk~D 131 (507)
T 3u0r_A 109 LQTDDSAEFNLVNNALLSIFKMD 131 (507)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHC
T ss_pred HhccchHHHHHHHHHHHHHHhcC
Confidence 65554 57777777777765544
No 54
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=93.21 E-value=0.53 Score=47.17 Aligned_cols=100 Identities=9% Similarity=-0.102 Sum_probs=66.7
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhc
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQ 300 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~ 300 (682)
++..+..+..++|.+...... .... +...+...+. ++++.+|..|++.+|.+.. + ..++.+++.+.
T Consensus 104 ~~~vr~~a~~aL~~l~~~~~~----~~~~-~~~~L~~~l~--d~~~~vR~~a~~aL~~~~~---~----~~~~~L~~~l~ 169 (280)
T 1oyz_A 104 SACVRATAIESTAQRCKKNPI----YSPK-IVEQSQITAF--DKSTNVRRATAFAISVIND---K----ATIPLLINLLK 169 (280)
T ss_dssp CHHHHHHHHHHHHHHHHHCGG----GHHH-HHHHHHHHTT--CSCHHHHHHHHHHHHTC----------CCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhccCCc----ccHH-HHHHHHHHhh--CCCHHHHHHHHHHHHhcCC---H----HHHHHHHHHHc
Confidence 567789999999988754221 1111 1223334466 7899999999999998865 2 25667778888
Q ss_pred cCCCCCCCCcchhHHHHHHHHHhhhcCCCCCChHHHHHHHHHhhcc
Q 005697 301 MLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGY 346 (682)
Q Consensus 301 d~~~~~~~~~pVrv~Aa~AL~~~l~~~~l~p~l~~llq~Ll~~L~~ 346 (682)
|++ ..||..|+.||..+-. .-+..+..|+..+.+
T Consensus 170 d~~------~~vr~~a~~aL~~~~~------~~~~~~~~L~~~l~d 203 (280)
T 1oyz_A 170 DPN------GDVRNWAAFAININKY------DNSDIRDCFVEMLQD 203 (280)
T ss_dssp CSS------HHHHHHHHHHHHHHTC------CCHHHHHHHHHHTTC
T ss_pred CCC------HHHHHHHHHHHHhhcc------CcHHHHHHHHHHhcC
Confidence 887 7899999999987631 224566666664543
No 55
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=93.15 E-value=0.49 Score=44.89 Aligned_cols=79 Identities=22% Similarity=0.123 Sum_probs=57.5
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhc
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQ 300 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~ 300 (682)
++..+..|+.++|.+.+. ..+ +.| ...+. +++|.+|..|++.++++.. + ..++.+++.|.
T Consensus 58 ~~~vr~~a~~~L~~~~~~------~~~-~~L----~~~l~--d~~~~vr~~a~~aL~~~~~---~----~~~~~L~~~l~ 117 (201)
T 3ltj_A 58 DAWVRRAAADALGQIGDE------RAV-EPL----IKALK--DEDGWVRQSAAVALGQIGD---E----RAVEPLIKALK 117 (201)
T ss_dssp SHHHHHHHHHHHHHHCCG------GGH-HHH----HHHTT--CSSHHHHHHHHHHHHHHCC---G----GGHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhhCCH------HHH-HHH----HHHHc--CCCHHHHHHHHHHHHHhCc---H----HHHHHHHHHHc
Confidence 566788888888876421 122 222 23456 6899999999999999865 2 24566777888
Q ss_pred cCCCCCCCCcchhHHHHHHHHHhhh
Q 005697 301 MLDKGDTSCYPVRASAAGAIVGLLE 325 (682)
Q Consensus 301 d~~~~~~~~~pVrv~Aa~AL~~~l~ 325 (682)
+++ ..||..|+.||..+-.
T Consensus 118 d~~------~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 118 DED------WFVRIAAAFALGEIGD 136 (201)
T ss_dssp CSS------HHHHHHHHHHHHHHTC
T ss_pred CCC------HHHHHHHHHHHHHhCC
Confidence 887 8899999999998753
No 56
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=92.81 E-value=0.45 Score=45.52 Aligned_cols=79 Identities=22% Similarity=0.123 Sum_probs=58.1
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhc
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQ 300 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~ 300 (682)
++..+..|+.++|.+.+. ..+ +.| ...+. ++++.+|..|++.++++.. + ..++.+++.|.
T Consensus 63 ~~~vr~~a~~aL~~~~~~------~~~-~~L----~~~l~--~~~~~vr~~a~~aL~~~~~---~----~~~~~L~~~l~ 122 (211)
T 3ltm_A 63 DAWVRRAAADALGQIGDE------RAV-EPL----IKALK--DEDGWVRQSAAVALGQIGD---E----RAVEPLIKALK 122 (211)
T ss_dssp CHHHHHHHHHHHHHHCCG------GGH-HHH----HHHTT--CSSHHHHHHHHHHHHHHCC---G----GGHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhhCCH------HHH-HHH----HHHHc--CCCHHHHHHHHHHHHHhCc---H----HHHHHHHHHHh
Confidence 567788888888876531 122 222 23456 7899999999999999865 2 24566777888
Q ss_pred cCCCCCCCCcchhHHHHHHHHHhhh
Q 005697 301 MLDKGDTSCYPVRASAAGAIVGLLE 325 (682)
Q Consensus 301 d~~~~~~~~~pVrv~Aa~AL~~~l~ 325 (682)
|++ ..||..|+.||..+-.
T Consensus 123 d~~------~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 123 DED------WFVRIAAAFALGEIGD 141 (211)
T ss_dssp CSS------HHHHHHHHHHHHHHCC
T ss_pred CCC------HHHHHHHHHHHHHcCC
Confidence 887 8899999999998743
No 57
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=92.06 E-value=7.6 Score=47.18 Aligned_cols=143 Identities=10% Similarity=0.093 Sum_probs=97.2
Q ss_pred CCcccHHHHHHHHHHhhhcCCh----hhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhc-CCCCCChHHHHH
Q 005697 264 CLPYLVASANWILGELASCLPE----DISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN-DYMPPEWYPLLQ 338 (682)
Q Consensus 264 ~~p~LrarA~~~l~~f~~~l~~----~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~-~~l~p~l~~llq 338 (682)
.+.--+-++||.+|-.+.++++ ..+.++++.+++....+. |...-..||...+..++++-+- ..=..++.++++
T Consensus 491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~-~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~ 569 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKR-GKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVN 569 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSC-SHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHH
T ss_pred CCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhccccccc-ccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHH
Confidence 4456788999999999988764 357777887777665441 0000134555555677765441 011447889999
Q ss_pred HHHHhhcccch-hhhHHHHHHHHHHHHhhhhh--------hchHHHHHHHHHHHHHHhcCCCCCCChhhHHhHHHHHHHH
Q 005697 339 VIVGRIGYEDE-ENSILFELLSSVVGAANENV--------ADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALM 409 (682)
Q Consensus 339 ~Ll~~L~~e~~-e~d~l~~~L~~iVe~~~e~i--------~P~a~~L~~~L~~~f~k~~~~~~~~~~~~~~~~~~aLa~~ 409 (682)
.++..+..... =.+....++..+++..++++ .||..+|.+.+..++.++ . ++-....++++|.+
T Consensus 570 ~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l-----~--~~~~~~lyeav~~v 642 (1073)
T 3gjx_A 570 KLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDL-----Q--PQQVHTFYEAVGYM 642 (1073)
T ss_dssp HHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTC-----C--HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhc-----C--HHHHHHHHHHHHHH
Confidence 99995443221 25567788999998888765 579999999988887554 1 35677889999988
Q ss_pred HHhhh
Q 005697 410 AQSWE 414 (682)
Q Consensus 410 ~~~~~ 414 (682)
+.+..
T Consensus 643 i~~~p 647 (1073)
T 3gjx_A 643 IGAQT 647 (1073)
T ss_dssp HTTCC
T ss_pred HHhCC
Confidence 88664
No 58
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=91.78 E-value=0.2 Score=44.73 Aligned_cols=76 Identities=12% Similarity=-0.003 Sum_probs=55.7
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhc
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQ 300 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~ 300 (682)
++..+..|..++|.+.+. ..+ +. +...+. ++++.+|..|+|.++++.. ...++.+.+.+.
T Consensus 55 ~~~vR~~A~~aL~~~~~~------~a~-~~----L~~~L~--d~~~~VR~~A~~aL~~~~~-------~~a~~~L~~~l~ 114 (131)
T 1te4_A 55 DWRIRGAAAWIIGNFQDE------RAV-EP----LIKLLE--DDSGFVRSGAARSLEQIGG-------ERVRAAMEKLAE 114 (131)
T ss_dssp CHHHHHHHHHHHGGGCSH------HHH-HH----HHHHHH--HCCTHHHHHHHHHHHHHCS-------HHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhcCCH------HHH-HH----HHHHHc--CCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHh
Confidence 577888999998876532 112 11 223345 5889999999999999874 245677778888
Q ss_pred cCCCCCCCCcchhHHHHHHHHH
Q 005697 301 MLDKGDTSCYPVRASAAGAIVG 322 (682)
Q Consensus 301 d~~~~~~~~~pVrv~Aa~AL~~ 322 (682)
|++ .-||..|+.||..
T Consensus 115 d~~------~~vr~~A~~aL~~ 130 (131)
T 1te4_A 115 TGT------GFARKVAVNYLET 130 (131)
T ss_dssp SCC------THHHHHHHHHGGG
T ss_pred CCC------HHHHHHHHHHHHh
Confidence 777 7899999999875
No 59
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=91.72 E-value=10 Score=44.29 Aligned_cols=96 Identities=18% Similarity=0.112 Sum_probs=65.6
Q ss_pred hhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcC-ChhhHHHHHHHHHHhhc
Q 005697 222 QKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCL-PEDISADVYSSLLKALQ 300 (682)
Q Consensus 222 ~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l-~~~~l~~il~~ll~~L~ 300 (682)
...++.+..++..++.. .+.....+..-....++..++ ++.+-++..|+|+++.++... +......+++.+++.|.
T Consensus 333 ~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~l~~Ll~lL~--~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~ 409 (780)
T 2z6g_A 333 EKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLT--DPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLG 409 (780)
T ss_dssp HHHHHHHHHHHHHHHTS-TTHHHHHHHTTHHHHHGGGTT--CSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhcC-hHHHHHHHHhchHHHHHHHHc--CCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHc
Confidence 34567777777777642 111111122222234445555 567889999999999998763 33345678999999998
Q ss_pred cCCCCCCCCcchhHHHHHHHHHhhhc
Q 005697 301 MLDKGDTSCYPVRASAAGAIVGLLEN 326 (682)
Q Consensus 301 d~~~~~~~~~pVrv~Aa~AL~~~l~~ 326 (682)
+++ .-||..|+.||.++..+
T Consensus 410 ~~d------~~vr~~A~~aL~~L~~~ 429 (780)
T 2z6g_A 410 SDD------INVVTCAAGILSNLTCN 429 (780)
T ss_dssp CSC------HHHHHHHHHHHHHHTSS
T ss_pred CCC------HHHHHHHHHHHHHHHhC
Confidence 877 78999999999999875
No 60
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=91.55 E-value=0.56 Score=41.63 Aligned_cols=67 Identities=19% Similarity=0.144 Sum_probs=50.7
Q ss_pred hhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhcCCCCCChH
Q 005697 255 VLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWY 334 (682)
Q Consensus 255 VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~~l~p~l~ 334 (682)
+...+. ++++.+|..|+|.+|++.. ...++.++++|.|++ .-||..|+.||..+-. +
T Consensus 47 L~~~L~--d~~~~vR~~A~~aL~~~~~-------~~a~~~L~~~L~d~~------~~VR~~A~~aL~~~~~--------~ 103 (131)
T 1te4_A 47 LLESLS--NEDWRIRGAAAWIIGNFQD-------ERAVEPLIKLLEDDS------GFVRSGAARSLEQIGG--------E 103 (131)
T ss_dssp HHHGGG--CSCHHHHHHHHHHHGGGCS-------HHHHHHHHHHHHHCC------THHHHHHHHHHHHHCS--------H
T ss_pred HHHHHc--CCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHcCCC------HHHHHHHHHHHHHhCc--------H
Confidence 335567 6899999999999999864 245677788888887 8899999999998753 3
Q ss_pred HHHHHHHHhh
Q 005697 335 PLLQVIVGRI 344 (682)
Q Consensus 335 ~llq~Ll~~L 344 (682)
..+..|.+.+
T Consensus 104 ~a~~~L~~~l 113 (131)
T 1te4_A 104 RVRAAMEKLA 113 (131)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 4455555534
No 61
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=90.60 E-value=9.7 Score=41.84 Aligned_cols=179 Identities=16% Similarity=0.151 Sum_probs=95.8
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCC--hhhH--HHHHHHHH
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLP--EDIS--ADVYSSLL 296 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~--~~~l--~~il~~ll 296 (682)
+...++.|..+++.|+..-.++.+..++.-....++..|. ++++-+|..|+|+++.++..-+ .+.+ ...++.++
T Consensus 114 ~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~--s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll 191 (510)
T 3ul1_B 114 CSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA--SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLL 191 (510)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHH
Confidence 4566777888999988543221111222222233344566 7899999999999999975321 1111 12466778
Q ss_pred HhhccCCCCCCCCcchhHHHHHHHHHhhhcCCCCCC---hHHHHHHHHHhhcccchhhhHH---HHHHHHHHHHhhhhhh
Q 005697 297 KALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPE---WYPLLQVIVGRIGYEDEENSIL---FELLSSVVGAANENVA 370 (682)
Q Consensus 297 ~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~~l~p~---l~~llq~Ll~~L~~e~~e~d~l---~~~L~~iVe~~~e~i~ 370 (682)
..|..++.... ...++-.|+.+|.+++.+..-.+. ..+++..|.+.+... +.+.. ..+|..+.....+...
T Consensus 192 ~lL~~~~~~~~-~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~--~~~v~~~A~~aL~~L~~~~~~~~~ 268 (510)
T 3ul1_B 192 ALLAVPDLSTL-ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN--DPEVLADSCWAISYLTDGPNERIE 268 (510)
T ss_dssp HHTCSSCGGGS-CHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred HHHHhccchhh-hHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcC--CHHHHHHHHHHHHHHhhchhhhHH
Confidence 88876552100 123556788899999887533333 345666777745443 33333 3344444332222221
Q ss_pred ch-HHHHHHHHHHHHHHhcCCCCCCChhhHHhHHHHHHHHHH
Q 005697 371 DH-IPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQ 411 (682)
Q Consensus 371 P~-a~~L~~~L~~~f~k~~~~~~~~~~~~~~~~~~aLa~~~~ 411 (682)
.. ...+++.|+.. +.... +.+...+..+|+.++.
T Consensus 269 ~i~~~g~i~~Lv~l----L~~~~---~~v~~~al~aL~nl~~ 303 (510)
T 3ul1_B 269 MVVKKGVVPQLVKL----LGATE---LPIVTPALRAIGNIVT 303 (510)
T ss_dssp HHHTTTCHHHHHHH----HTCSC---HHHHHHHHHHHHHHTT
T ss_pred HHHhcccchhhhhh----hcCCC---hhhhhHHHHHHHHhhc
Confidence 11 11233333333 33332 3577777777765543
No 62
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=90.34 E-value=0.39 Score=53.43 Aligned_cols=94 Identities=16% Similarity=0.142 Sum_probs=63.7
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHH----hhhhcccCCCCCcccHHHHHHHHHHhhhcCCh--hhH--HHHH
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRS----RVLPLYSVSVCLPYLVASANWILGELASCLPE--DIS--ADVY 292 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~----~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~--~~l--~~il 292 (682)
+...+..|+.++|.++..-.. ....++.. .+...+. ++.+-+|..|||+++.++..-+. +.+ ..++
T Consensus 306 ~~~v~~~a~~aL~nl~~~~~~----~~~~i~~~g~l~~L~~LL~--~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i 379 (529)
T 3tpo_A 306 ELPIVTPALRAIGNIVTGTDE----QTQKVIDAGALAVFPSLLT--NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 379 (529)
T ss_dssp CHHHHHHHHHHHHHHTTSCHH----HHHHHHHTTGGGGHHHHTT--CSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHH
T ss_pred ChhHHHHHHHHHHHHHccchH----HHHHHhhcccHHHHHHHHc--CCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcH
Confidence 456678888888887643111 11122222 2333455 78899999999999998764211 111 2367
Q ss_pred HHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhc
Q 005697 293 SSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 326 (682)
Q Consensus 293 ~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~ 326 (682)
+.++..|.+++ ..||..|+.||.+++.+
T Consensus 380 ~~Lv~lL~~~~------~~v~~~A~~aL~nl~~~ 407 (529)
T 3tpo_A 380 PFLVGVLSKAD------FKTQKAAAWAITNYTSG 407 (529)
T ss_dssp HHHHHHHHSSC------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCC------HHHHHHHHHHHHHHHcC
Confidence 78888898887 89999999999999874
No 63
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=90.26 E-value=1.9 Score=43.07 Aligned_cols=54 Identities=13% Similarity=-0.047 Sum_probs=43.8
Q ss_pred hcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhh
Q 005697 257 PLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLE 325 (682)
Q Consensus 257 P~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~ 325 (682)
..|. ++++..|..|++.+++++. ...++.+++.|.+++ ..||..|+.+|..+-.
T Consensus 30 ~~L~--~~~~~vr~~A~~~L~~~~~-------~~~~~~L~~~l~d~~------~~vR~~A~~aL~~l~~ 83 (280)
T 1oyz_A 30 RLLD--DHNSLKRISSARVLQLRGG-------QDAVRLAIEFCSDKN------YIRRDIGAFILGQIKI 83 (280)
T ss_dssp HHTT--CSSHHHHHHHHHHHHHHCC-------HHHHHHHHHHHTCSS------HHHHHHHHHHHHHSCC
T ss_pred HHHH--cCCHHHHHHHHHHHHccCC-------chHHHHHHHHHcCCC------HHHHHHHHHHHHHhcc
Confidence 4466 6889999999999999873 346777888888887 7899999999988753
No 64
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=90.10 E-value=0.85 Score=54.73 Aligned_cols=147 Identities=10% Similarity=0.091 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHhhhcchhHHHHHHHh---hhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhccC
Q 005697 226 FGVLMAYGGLQEFLREQKSEFTANLVRSR---VLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQML 302 (682)
Q Consensus 226 egaL~~lg~la~~l~~~~~~~le~fL~~~---VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~d~ 302 (682)
|+|+.+++.++..... +.-+|+++... ++-.+. +...-+|..|-..+..+...++++.+..+++.+++.|...
T Consensus 70 ~~a~~~~~~~~~~~~~--~~~~e~~~~~~~~~~~~~~~--dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 145 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNL--SPSVEPYIVQLVPAICTNAG--NKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVET 145 (986)
T ss_dssp HHHHHHHHHHTCTTTC--CTTTHHHHHTTHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCC--CCCcccchHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccc
Confidence 9999999999876542 22247776533 222233 5667899999999999999999998999999999999776
Q ss_pred CCCCCCCcchhHHHHHHHHHhhhc--CCCCCChHHHHHHHHHhhcccchh-hhHHHHHHHHHHHHhh-hhhhchHHHHHH
Q 005697 303 DKGDTSCYPVRASAAGAIVGLLEN--DYMPPEWYPLLQVIVGRIGYEDEE-NSILFELLSSVVGAAN-ENVADHIPYIVS 378 (682)
Q Consensus 303 ~~~~~~~~pVrv~Aa~AL~~~l~~--~~l~p~l~~llq~Ll~~L~~e~~e-~d~l~~~L~~iVe~~~-e~i~P~a~~L~~ 378 (682)
.+ -..++.|...|..+.+. +.+.-.++.++-.+-.++-....| ......+|..++...+ .+|.||.|.|+.
T Consensus 146 ~k-----w~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~ 220 (986)
T 2iw3_A 146 NK-----WQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQ 220 (986)
T ss_dssp CC-----HHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHH
T ss_pred cc-----hHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHH
Confidence 52 68999999999999875 233333344443333322222212 4455777888776554 459999988887
Q ss_pred HHH
Q 005697 379 SLV 381 (682)
Q Consensus 379 ~L~ 381 (682)
.+.
T Consensus 221 ~~~ 223 (986)
T 2iw3_A 221 CIA 223 (986)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
No 65
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=89.88 E-value=2 Score=47.61 Aligned_cols=91 Identities=16% Similarity=0.232 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhhhcchhHHHHHHHhhhhcc----cCCCCCcccHHHHHHHHHHhhhcCChh--hH--HHHHHHHHHhhc
Q 005697 229 LMAYGGLQEFLREQKSEFTANLVRSRVLPLY----SVSVCLPYLVASANWILGELASCLPED--IS--ADVYSSLLKALQ 300 (682)
Q Consensus 229 L~~lg~la~~l~~~~~~~le~fL~~~VlP~l----~~~s~~p~LrarA~~~l~~f~~~l~~~--~l--~~il~~ll~~L~ 300 (682)
+.++..+...+.....+.++.++..-++|-| .. +.+|-++..|+|+++.++..-+.. .+ ..+++.++++|.
T Consensus 94 ~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~-~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~ 172 (529)
T 3tpo_A 94 LQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK-TDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 172 (529)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTC-TTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcC-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc
Confidence 4445555444443233335555555555543 32 577899999999999998753322 12 135788889998
Q ss_pred cCCCCCCCCcchhHHHHHHHHHhhhc
Q 005697 301 MLDKGDTSCYPVRASAAGAIVGLLEN 326 (682)
Q Consensus 301 d~~~~~~~~~pVrv~Aa~AL~~~l~~ 326 (682)
+++ ..||..|+.||.++..+
T Consensus 173 s~~------~~v~e~A~~aL~nLa~~ 192 (529)
T 3tpo_A 173 SPH------AHISEQAVWALGNIAGA 192 (529)
T ss_dssp CSC------HHHHHHHHHHHHHHHTT
T ss_pred CCC------HHHHHHHHHHHHHHhcc
Confidence 887 88999999999999864
No 66
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=89.53 E-value=1.6 Score=46.25 Aligned_cols=89 Identities=11% Similarity=-0.037 Sum_probs=69.6
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhc
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQ 300 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~ 300 (682)
+...|.-++..+-.+++. ..+.+ +..+.+.-+++ +++|++|+-|..++++.. +++++..+.+.+.++|.
T Consensus 81 d~~lKrLvYLyl~~~~~~----~~e~i--Lv~Nsl~kDl~--~~N~~iR~lALRtL~~I~---~~~m~~~l~~~lk~~L~ 149 (355)
T 3tjz_B 81 DPTLRRMCYLTIKEMSCI----AEDVI--IVTSSLTKDMT--GKEDSYRGPAVRALCQIT---DSTMLQAIERYMKQAIV 149 (355)
T ss_dssp CHHHHHHHHHHHHHHTTT----SSCGG--GGHHHHHHHHH--SSCHHHHHHHHHHHHHHC---CTTTHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCCC----HHHHH--HHHHHHHhhcC--CCcHhHHHHHHHHHhcCC---CHHHHHHHHHHHHHHcC
Confidence 455666666666555444 22222 55667778888 799999999999988874 48899999999999999
Q ss_pred cCCCCCCCCcchhHHHHHHHHHhhhc
Q 005697 301 MLDKGDTSCYPVRASAAGAIVGLLEN 326 (682)
Q Consensus 301 d~~~~~~~~~pVrv~Aa~AL~~~l~~ 326 (682)
|.+ .-||-.|+.|...++..
T Consensus 150 d~~------pyVRk~A~l~~~kL~~~ 169 (355)
T 3tjz_B 150 DKV------PSVSSSALVSSLHLLKC 169 (355)
T ss_dssp CSS------HHHHHHHHHHHHHHTTT
T ss_pred CCC------HHHHHHHHHHHHHHhcc
Confidence 998 88999999999988764
No 67
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=89.30 E-value=2.1 Score=51.36 Aligned_cols=133 Identities=17% Similarity=0.215 Sum_probs=95.0
Q ss_pred HHHHHHHHHhhhcCC-----hhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhcCCCCCC-hHHHHHHHHHh
Q 005697 270 ASANWILGELASCLP-----EDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPE-WYPLLQVIVGR 343 (682)
Q Consensus 270 arA~~~l~~f~~~l~-----~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~~l~p~-l~~llq~Ll~~ 343 (682)
..||..++..++.+. +..+..+++.++.++.|.. -+||-.|..|+..++. .+.|+ +..++-.|+..
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~------~~v~~aa~~~~~~~~~--~~~~~a~~~~~~~~~~~ 141 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKD------KEIQSVASETLISIVN--AVNPVAIKALLPHLTNA 141 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSS------HHHHHHHHHHHHHHHH--HSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCc------hHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHH
Confidence 677888887775431 3355667899999998877 7999999999999988 34442 22333444443
Q ss_pred hccc-c-hhhhHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHhcCCCCCCChhhHHhHHHHHHHHHHhhhhhc
Q 005697 344 IGYE-D-EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFL 417 (682)
Q Consensus 344 L~~e-~-~e~d~l~~~L~~iVe~~~e~i~P~a~~L~~~L~~~f~k~~~~~~~~~~~~~~~~~~aLa~~~~~~~~~~ 417 (682)
|... . ......+.+|+.+++...+++.-..+++++.+.+.. .+.- +++...+.+++..+..+.++.|
T Consensus 142 ~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~----~d~k---~~v~~~~~~~~~~~~~~~~n~d 210 (986)
T 2iw3_A 142 IVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETM----WDTK---KEVKAAATAAMTKATETVDNKD 210 (986)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHT----TCSS---HHHHHHHHHHHHHHGGGCCCTT
T ss_pred hccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhc----ccCc---HHHHHHHHHHHHHHHhcCCCcc
Confidence 3222 2 355667999999999999999989999999887775 3332 4688888888888888776655
No 68
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=89.28 E-value=2.3 Score=46.95 Aligned_cols=73 Identities=15% Similarity=0.222 Sum_probs=52.3
Q ss_pred HHHHHHHhhhhc----ccCCCCCcccHHHHHHHHHHhhhcCChh--hHH--HHHHHHHHhhccCCCCCCCCcchhHHHHH
Q 005697 247 TANLVRSRVLPL----YSVSVCLPYLVASANWILGELASCLPED--ISA--DVYSSLLKALQMLDKGDTSCYPVRASAAG 318 (682)
Q Consensus 247 le~fL~~~VlP~----l~~~s~~p~LrarA~~~l~~f~~~l~~~--~l~--~il~~ll~~L~d~~~~~~~~~pVrv~Aa~ 318 (682)
++.++..-++|- |.. +.+|-+|..|+|+++.++..-++. .+. ..++.++++|.+++ .-||-.|+.
T Consensus 93 i~~ii~~G~ip~LV~lL~~-~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~------~~v~e~A~~ 165 (510)
T 3ul1_B 93 IDNIIRAGLIPKFVSFLGK-TDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH------AHISEQAVW 165 (510)
T ss_dssp HHHHHHTTHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC------HHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHCC-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCC------HHHHHHHHH
Confidence 444444444443 443 567899999999999998753221 122 25788899999887 889999999
Q ss_pred HHHHhhhc
Q 005697 319 AIVGLLEN 326 (682)
Q Consensus 319 AL~~~l~~ 326 (682)
||.++..+
T Consensus 166 aL~nLa~d 173 (510)
T 3ul1_B 166 ALGNIAGD 173 (510)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhC
Confidence 99999865
No 69
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=86.80 E-value=8.7 Score=41.56 Aligned_cols=96 Identities=18% Similarity=0.112 Sum_probs=65.5
Q ss_pred hhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcC-ChhhHHHHHHHHHHhhc
Q 005697 222 QKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCL-PEDISADVYSSLLKALQ 300 (682)
Q Consensus 222 ~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l-~~~~l~~il~~ll~~L~ 300 (682)
...++++..++..++.. .+.....++.-....+++.+. ++++-++..|+|+++.++... +.+....+++.+++.|.
T Consensus 200 ~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~ 276 (529)
T 1jdh_A 200 EKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLT--DPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLG 276 (529)
T ss_dssp HHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTTT--SSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHHh--CCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHc
Confidence 34567777777777632 110011112122334445556 567889999999999998863 33455688999999998
Q ss_pred cCCCCCCCCcchhHHHHHHHHHhhhc
Q 005697 301 MLDKGDTSCYPVRASAAGAIVGLLEN 326 (682)
Q Consensus 301 d~~~~~~~~~pVrv~Aa~AL~~~l~~ 326 (682)
+++ ..||..|+.+|.++..+
T Consensus 277 ~~~------~~v~~~a~~~L~~L~~~ 296 (529)
T 1jdh_A 277 SDD------INVVTCAAGILSNLTCN 296 (529)
T ss_dssp CSC------HHHHHHHHHHHHHHTTT
T ss_pred CCC------HHHHHHHHHHHHHHhcC
Confidence 776 78999999999999774
No 70
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=86.34 E-value=18 Score=34.95 Aligned_cols=73 Identities=15% Similarity=0.031 Sum_probs=53.2
Q ss_pred CCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhcCCCCCChHHHHHHHHH
Q 005697 263 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVG 342 (682)
Q Consensus 263 s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~~l~p~l~~llq~Ll~ 342 (682)
|++..=|-.|+.+++-.+. -.+.....+++.+...|.|.| -.||.+|..+|..+.. ..|.+.+++..-++
T Consensus 155 skd~~Dkl~aLnFi~alGe-n~~~yv~PfLprL~aLL~D~d------eiVRaSaVEtL~~lA~---~npklRkii~~kl~ 224 (253)
T 2db0_A 155 SKNREDKLTALNFIEAMGE-NSFKYVNPFLPRIINLLHDGD------EIVRASAVEALVHLAT---LNDKLRKVVIKRLE 224 (253)
T ss_dssp CSSHHHHHHHHHHHHTCCT-TTHHHHGGGHHHHHGGGGCSS------HHHHHHHHHHHHHHHT---SCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHhc-cCccccCcchHHHHHHHcCcc------hhhhHHHHHHHHHHHH---cCHHHHHHHHHHHH
Confidence 6777777777777776655 234566678888889998887 7899999999887765 45556777766666
Q ss_pred hhc
Q 005697 343 RIG 345 (682)
Q Consensus 343 ~L~ 345 (682)
.+.
T Consensus 225 e~~ 227 (253)
T 2db0_A 225 ELN 227 (253)
T ss_dssp HCC
T ss_pred Hhc
Confidence 443
No 71
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=82.67 E-value=3.7 Score=48.26 Aligned_cols=95 Identities=18% Similarity=0.087 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCC--hhhH--HHHHHHHHHh
Q 005697 223 KDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLP--EDIS--ADVYSSLLKA 298 (682)
Q Consensus 223 ~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~--~~~l--~~il~~ll~~ 298 (682)
..++-|+.+++.|+..-.+.....++.-....+...+. ++++.+|..|+|+++.++..-+ .... ...++.+++.
T Consensus 596 l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~--s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~L 673 (810)
T 3now_A 596 LENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLM--EDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALL 673 (810)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH--SCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHG
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHH
Confidence 44556777888877541110111222222234444455 6788999999999999876311 1111 1356777888
Q ss_pred hccCCCCCCCCcchhHHHHHHHHHhhh
Q 005697 299 LQMLDKGDTSCYPVRASAAGAIVGLLE 325 (682)
Q Consensus 299 L~d~~~~~~~~~pVrv~Aa~AL~~~l~ 325 (682)
+..++ ..||..||.||.++..
T Consensus 674 L~s~d------~~vq~~Aa~ALanLt~ 694 (810)
T 3now_A 674 CEDED------EETATACAGALAIITS 694 (810)
T ss_dssp GGCSS------HHHHHHHHHHHHHHHH
T ss_pred hcCCC------HHHHHHHHHHHHHHhC
Confidence 87766 8999999999999987
No 72
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=82.39 E-value=6.1 Score=44.75 Aligned_cols=95 Identities=18% Similarity=0.107 Sum_probs=65.4
Q ss_pred hhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcC-ChhhHHHHHHHHHHhhcc
Q 005697 223 KDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCL-PEDISADVYSSLLKALQM 301 (682)
Q Consensus 223 ~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l-~~~~l~~il~~ll~~L~d 301 (682)
+.++.+..++..++.. .+.+...++.-....+++.+. ++++-+|..|+|+++.++... +.+....+++.+++.|.+
T Consensus 198 ~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll~--~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~ 274 (644)
T 2z6h_A 198 KLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLT--DPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGS 274 (644)
T ss_dssp HHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTTT--CSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHHh--cCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcC
Confidence 4466777777777632 110111122222334455566 567889999999999998763 344556889999999987
Q ss_pred CCCCCCCCcchhHHHHHHHHHhhhc
Q 005697 302 LDKGDTSCYPVRASAAGAIVGLLEN 326 (682)
Q Consensus 302 ~~~~~~~~~pVrv~Aa~AL~~~l~~ 326 (682)
++ .-||..|+.||.++..+
T Consensus 275 ~d------~~v~~~a~~aL~~L~~~ 293 (644)
T 2z6h_A 275 DD------INVVTCAAGILSNLTCN 293 (644)
T ss_dssp SC------HHHHHHHHHHHHHHHTT
T ss_pred CC------HHHHHHHHHHHHHHHcC
Confidence 77 78999999999999875
No 73
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=81.44 E-value=9.6 Score=38.15 Aligned_cols=178 Identities=8% Similarity=0.005 Sum_probs=103.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHhhh-cch-hH------HHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCC------
Q 005697 219 SRIQKDYFGVLMAYGGLQEFLREQ-KSE-FT------ANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLP------ 284 (682)
Q Consensus 219 ~~~~~~kegaL~~lg~la~~l~~~-~~~-~l------e~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~------ 284 (682)
+++|+.+..||-.+..+-...... .++ .+ ...+. ..+. +.+.-+...|+.++..|...+.
T Consensus 20 sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lk----k~l~--DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 20 YKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFA----QYIT--DSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp CSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHH----HHTT--CSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred cCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHH----HHhc--cchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 468999999887766543321110 011 01 12222 2244 6778888899999999887532
Q ss_pred ---hhhHHHHHHHHHH-hhccCCCCCCCCcchhHHHHHHHHHhhhcCCCCCChHHHHHHHHHhhcccc-hhhhHHHHHHH
Q 005697 285 ---EDISADVYSSLLK-ALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYED-EENSILFELLS 359 (682)
Q Consensus 285 ---~~~l~~il~~ll~-~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~~l~p~l~~llq~Ll~~L~~e~-~e~d~l~~~L~ 359 (682)
......+++.++. +|.++. ..+|..|..++-.+++...- ...+++.++..+.+.. .-....+..|.
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k------~~~~~~a~~~l~~~~~~~~~---~~~~~e~l~~~l~~Knpkv~~~~l~~l~ 164 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSR------ATTKTQSMSCILSLCGLDTS---ITQSVELVIPFFEKKLPKLIAAAANCVY 164 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCC------HHHHHHHHHHHHHHHHTSSS---SHHHHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCcc------HHHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 1234556666664 577776 78999999999888875432 2345566666444332 12334566777
Q ss_pred HHHHHhhhhhhchHHHHHHHHHHHHHHhcCCCCCCChhhHHhHHHHHHHHHHhhhh
Q 005697 360 SVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWEN 415 (682)
Q Consensus 360 ~iVe~~~e~i~P~a~~L~~~L~~~f~k~~~~~~~~~~~~~~~~~~aLa~~~~~~~~ 415 (682)
++++.|+-...+.- ..+..+...+.+.+.+.. +.+++.+.+.++.+-...|+
T Consensus 165 ~~l~~fg~~~~~~k-~~l~~i~~~l~k~l~d~~---~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 165 ELMAAFGLTNVNVQ-TFLPELLKHVPQLAGHGD---RNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp HHHHHHTTTTCCHH-HHHHHHGGGHHHHHTCSS---HHHHHHHHHHHHHHHTC---
T ss_pred HHHHHhCCCcCCch-hHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHHHhCc
Confidence 77888876654421 122333333344444443 57888888888888776653
No 74
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=80.83 E-value=16 Score=36.49 Aligned_cols=91 Identities=18% Similarity=0.143 Sum_probs=63.4
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhc-----CCh-hhHHHHHHH
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASC-----LPE-DISADVYSS 294 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~-----l~~-~~l~~il~~ 294 (682)
..+.++.++.++-.+..... . . ..+...+.+.+. +.+|-+|..++.++.+.-.. .++ ..+..++..
T Consensus 116 k~~~~~~a~~~l~~~~~~~~---~--~-~~~~e~l~~~l~--~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~ 187 (278)
T 4ffb_C 116 RATTKTQSMSCILSLCGLDT---S--I-TQSVELVIPFFE--KKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKH 187 (278)
T ss_dssp CHHHHHHHHHHHHHHHHTSS---S--S-HHHHHHHGGGGG--CSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGG
T ss_pred cHHHHHHHHHHHHHHHHhcC---c--H-HHHHHHHHHHHh--ccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHH
Confidence 34557777766655543321 1 1 223456778888 78999999888777664332 343 356678888
Q ss_pred HHHhhccCCCCCCCCcchhHHHHHHHHHhhh
Q 005697 295 LLKALQMLDKGDTSCYPVRASAAGAIVGLLE 325 (682)
Q Consensus 295 ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~ 325 (682)
+.++|.|++ ..||-.|...+..+..
T Consensus 188 l~k~l~d~~------~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 188 VPQLAGHGD------RNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHTCSS------HHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCc------HHHHHHHHHHHHHHHH
Confidence 999999998 8999999999988876
No 75
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=78.99 E-value=35 Score=34.06 Aligned_cols=160 Identities=13% Similarity=0.019 Sum_probs=103.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcC----ChhhHHHHHHH
Q 005697 219 SRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCL----PEDISADVYSS 294 (682)
Q Consensus 219 ~~~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l----~~~~l~~il~~ 294 (682)
...|+.|++.=.+... .+.+ +.+++.+. ...+.+|.||+.++++.-+.+ +...+.++++.
T Consensus 16 L~sWkiK~a~ela~~~---------e~~l-----~~L~~LL~--dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~ 79 (265)
T 3b2a_A 16 VLSWQILDAVSLALED---------KRAL-----FLILELAG--EDDETTRLRAFVALGEILKRADSDLRMMVLERHLDV 79 (265)
T ss_dssp HHTTCHHHHHHHHHHC---------HHHH-----HHHHHHTT--SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHhc---------hhHH-----HHHHHHHh--ccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 4579888875332211 1112 23445566 789999999999999997764 45678899999
Q ss_pred HHHhhccCCCCCCCCcchhHHHHHHHHHhhhcCCCCCC-hHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhhhhhchH
Q 005697 295 LLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPE-WYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHI 373 (682)
Q Consensus 295 ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~~l~p~-l~~llq~Ll~~L~~e~~e~d~l~~~L~~iVe~~~e~i~P~a 373 (682)
+++.+.++| =-|-+.|.++|+.++++..+.|. ..-++..+.. +... .++.+..-.-...+.. .++...
T Consensus 80 iI~llk~~d------Ekval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~d-lik~--~~~il~~eaae~Lgkl--kv~~~~ 148 (265)
T 3b2a_A 80 FINALSQEN------EKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVS-LLES--PDDMMRIETIDVLSKL--QPLEDS 148 (265)
T ss_dssp HHHTCCSTT------HHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHH-HTTS--CCHHHHHHHHHHHHHC--CBSCCC
T ss_pred HHHHHhccc------hhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-HhcC--CCchHHHHHHHHhCcC--Ccccch
Confidence 999998887 68999999999999998666654 3444455555 3332 3444433333333333 344444
Q ss_pred HHHHHHHHHHHHHhcCCCCCCChhhHHhHHHHHHHHHHh
Q 005697 374 PYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQS 412 (682)
Q Consensus 374 ~~L~~~L~~~f~k~~~~~~~~~~~~~~~~~~aLa~~~~~ 412 (682)
+.+.+-+. +++.. .+ +++..-++.+|..++.-
T Consensus 149 ~~V~~~l~----sLl~S-kd--~~vK~agl~~L~eia~~ 180 (265)
T 3b2a_A 149 KLVRTYIN----ELVVS-PD--LYTKVAGFCLFLNMLNS 180 (265)
T ss_dssp HHHHHHHH----HHHTC-SS--HHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHH----HHHhC-CC--hhHHHHHHHHHHHhhcc
Confidence 55555444 44422 22 57888899999877774
No 76
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=77.22 E-value=4.2 Score=43.04 Aligned_cols=92 Identities=13% Similarity=-0.005 Sum_probs=65.2
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhh
Q 005697 220 RIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKAL 299 (682)
Q Consensus 220 ~~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L 299 (682)
.|...+-.||+.++.+.+- +.+ +-+...|-..+. +.+||+|..|+.++.+... ..|+....+++.+-.++
T Consensus 116 ~N~~iR~lALRtL~~I~~~------~m~-~~l~~~lk~~L~--d~~pyVRk~A~l~~~kL~~-~~pe~v~~~~~~l~~ll 185 (355)
T 3tjz_B 116 KEDSYRGPAVRALCQITDS------TML-QAIERYMKQAIV--DKVPSVSSSALVSSLHLLK-CSFDVVKRWVNEAQEAA 185 (355)
T ss_dssp SCHHHHHHHHHHHHHHCCT------TTH-HHHHHHHHHHHT--CSSHHHHHHHHHHHHHHTT-TCHHHHHTTHHHHHHHT
T ss_pred CcHhHHHHHHHHHhcCCCH------HHH-HHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHh
Confidence 3567788888888886532 122 233445556677 7999999999999887744 46778888999999999
Q ss_pred ccCCCCCCCCcchhHHHHHHHHHhhhcC
Q 005697 300 QMLDKGDTSCYPVRASAAGAIVGLLEND 327 (682)
Q Consensus 300 ~d~~~~~~~~~pVrv~Aa~AL~~~l~~~ 327 (682)
.|.+ .-|...|..+|..+.+++
T Consensus 186 ~d~n------~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 186 SSDN------IMVQYHALGLLYHVRKND 207 (355)
T ss_dssp TCSS------HHHHHHHHHHHHHHHTTC
T ss_pred cCCC------ccHHHHHHHHHHHHHhhc
Confidence 8887 556566666666655543
No 77
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=73.69 E-value=3.6 Score=47.35 Aligned_cols=58 Identities=10% Similarity=-0.001 Sum_probs=43.7
Q ss_pred ccCCCCCcccHHHHHHHHHHhhhcCChhhH-----HHHHHHH-HHhhccCCCCCCCCcchhHHHHHHHHHhhhc
Q 005697 259 YSVSVCLPYLVASANWILGELASCLPEDIS-----ADVYSSL-LKALQMLDKGDTSCYPVRASAAGAIVGLLEN 326 (682)
Q Consensus 259 l~~~s~~p~LrarA~~~l~~f~~~l~~~~l-----~~il~~l-l~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~ 326 (682)
|+ |+.+-.|..||+.++.+.. ++++. ..++..+ .++|.|++ .-||.+|+.||+++..+
T Consensus 43 L~--S~~~~~r~~A~~al~~l~~--~~~~~~l~~~~~~v~~ll~~lL~D~~------~~Vr~~A~gaLrnL~~~ 106 (684)
T 4gmo_A 43 LK--SPDAKSRTTAAGAIANIVQ--DAKCRKLLLREQVVHIVLTETLTDNN------IDSRAAGWEILKVLAQE 106 (684)
T ss_dssp HS--SSCCSHHHHHHHHHHHHTT--SHHHHHHHHHTTHHHHHHHTTTTCSC------HHHHHHHHHHHHHHHHH
T ss_pred cC--CCCHHHHHHHHHHHHHHHc--CcHHHHHHHHcCCHHHHHHHHcCCCC------HHHHHHHHHHHHHHHhh
Confidence 56 7899999999999999975 33221 2234443 45678887 89999999999999765
No 78
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=73.23 E-value=14 Score=42.94 Aligned_cols=95 Identities=18% Similarity=0.125 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHHHHHHHh----hhcchhHH-HHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcC--------Chh--h
Q 005697 223 KDYFGVLMAYGGLQEFLR----EQKSEFTA-NLVRSRVLPLYSVSVCLPYLVASANWILGELASCL--------PED--I 287 (682)
Q Consensus 223 ~~kegaL~~lg~la~~l~----~~~~~~le-~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l--------~~~--~ 287 (682)
.+++-|+++++.|+..=. +..+..+. .-....+...+. +.+..+|..|||+++.+...- +.+ .
T Consensus 574 l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~--s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~ 651 (778)
T 3opb_A 574 TDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLML--DENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQ 651 (778)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGG--CSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHH
T ss_pred HHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHh--CCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCch
Confidence 568889999999987520 00111122 112233334444 678899999999999987531 111 0
Q ss_pred HHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhh
Q 005697 288 SADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLE 325 (682)
Q Consensus 288 l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~ 325 (682)
-.+-++.++..+...+ ..+|..|+.||..+-.
T Consensus 652 ~~~rL~lLV~Ll~s~D------~~~r~AAagALAnLts 683 (778)
T 3opb_A 652 SLRNFNILVKLLQLSD------VESQRAVAAIFANIAT 683 (778)
T ss_dssp HHHHHHHHHHGGGCSC------HHHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHcCCC------HHHHHHHHHHHHHhcC
Confidence 1123677888887766 8999999999999853
No 79
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=72.90 E-value=30 Score=34.81 Aligned_cols=168 Identities=11% Similarity=0.093 Sum_probs=96.1
Q ss_pred HHHHHhcCCCCCCCCCccccchhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCC---CCcccHHHHHHHHH
Q 005697 201 VLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSV---CLPYLVASANWILG 277 (682)
Q Consensus 201 i~~~L~~~~~~~~~~~~~~~~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s---~~p~LrarA~~~l~ 277 (682)
++++++=|+..+.|+- ....-...--||-++-++|..=.. ...++..-+-.++.|.+..++ ++-+||=.++-++|
T Consensus 50 LQEIisiYp~lspp~L-t~~~SnRVcnaLaLlQcvAshpet-r~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIg 127 (268)
T 2fv2_A 50 LQEIVNIYPSINPPTL-TAHQSNRVCNALALLQCVASHPET-RSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIG 127 (268)
T ss_dssp HHHHHHTGGGBTTBCC-CHHHHHHHHHHHHHHHHHHHCTTT-HHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccCCCccc-CHHHHhHHHHHHHHHHHHHcCcch-hhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHH
Confidence 6777777765442221 111223345555555655543111 122332222234456666433 34499988888888
Q ss_pred HhhhcCChhhH-----HHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhcCCCCCChHHHHHHHHHhhcccchhhh
Q 005697 278 ELASCLPEDIS-----ADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENS 352 (682)
Q Consensus 278 ~f~~~l~~~~l-----~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~~l~p~l~~llq~Ll~~L~~e~~e~d 352 (682)
...+.=+++.. .++++..++.|...+ ---|+-|..-++.++.++. +|--.=.+.+ -.-
T Consensus 128 aLvK~dd~eVi~fLL~tEiiplCLrime~Gs------elSKtvAtfIlqKIL~dd~----------GL~YiC~t~e-RF~ 190 (268)
T 2fv2_A 128 ALVKTDEQEVINFLLTTEIIPLCLRIMESGS------ELSKTVATFILQKILLDDT----------GLAYICQTYE-RFS 190 (268)
T ss_dssp HHGGGCCHHHHHHHHHTTHHHHHHHHHHHSC------HHHHHHHHHHHHHHHHSHH----------HHHHHTSSHH-HHH
T ss_pred HHhccCcHHHHHHHHhhhHHHHHHHHHhhcc------HHHHHHHHHHHHHHhccch----------hHHHHHccHH-HHH
Confidence 88765444422 456788888887765 5677777777776665431 1100001111 344
Q ss_pred HHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHhcCC
Q 005697 353 ILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHP 390 (682)
Q Consensus 353 ~l~~~L~~iVe~~~e~i~P~a~~L~~~L~~~f~k~~~~ 390 (682)
.+..+|..+|....++ ..+.|..+++..++|+..+
T Consensus 191 av~~vL~~mV~~l~~~---ps~RLLKhiircYlRLsdn 225 (268)
T 2fv2_A 191 HVAMILGKMVLQLSKE---PSARLLKHVVRCYLRLSDN 225 (268)
T ss_dssp HHHHHHHHHHHHTTTS---CCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHhcC
Confidence 5677788888766554 3458999999999998643
No 80
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=71.72 E-value=14 Score=40.04 Aligned_cols=114 Identities=12% Similarity=-0.021 Sum_probs=71.2
Q ss_pred hhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHH-----HHHHH
Q 005697 222 QKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADV-----YSSLL 296 (682)
Q Consensus 222 ~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~i-----l~~ll 296 (682)
+..+..|..+++.++..-...+....+.-....++..+. ++++-++..|+|.+..++.. ++++-..+ ++.++
T Consensus 16 ~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~--s~~~~~~~~A~~aL~nLa~~-~~~~k~~i~~~G~i~~Lv 92 (457)
T 1xm9_A 16 EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLR--SPNQNVQQAAAGALRNLVFR-STTNKLETRRQNGIREAV 92 (457)
T ss_dssp THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTT--SSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHH
Confidence 445777777888776321000001112112223334566 68889999999999999874 23333333 67889
Q ss_pred Hhhc-cCCCCCCCCcchhHHHHHHHHHhhhcCCCCCC-hHHHHHHHHHhh
Q 005697 297 KALQ-MLDKGDTSCYPVRASAAGAIVGLLENDYMPPE-WYPLLQVIVGRI 344 (682)
Q Consensus 297 ~~L~-d~~~~~~~~~pVrv~Aa~AL~~~l~~~~l~p~-l~~llq~Ll~~L 344 (682)
+.|. +++ ..||..|+.||.++..++..+.. +...+..|++.|
T Consensus 93 ~lL~~~~~------~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll 136 (457)
T 1xm9_A 93 SLLRRTGN------AEIQKQLTGLLWNLSSTDELKEELIADALPVLADRV 136 (457)
T ss_dssp HHHTTCCC------HHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHT
T ss_pred HHHhhCCC------HHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHH
Confidence 9998 555 78999999999999987544332 224555666644
No 81
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=69.76 E-value=1.2e+02 Score=32.29 Aligned_cols=173 Identities=15% Similarity=0.035 Sum_probs=89.6
Q ss_pred chhhHHHHHHHHHHHHHHHhhh-----cchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCC-hhhH--HHHH
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQ-----KSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLP-EDIS--ADVY 292 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~-----~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~-~~~l--~~il 292 (682)
+++.+..+..+++.++..-.+. ..+.++.+ +..+.. ....-++..++.++..++..-. .+.+ ..++
T Consensus 156 ~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L-----~~ll~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~ 229 (529)
T 1jdh_A 156 NVKFLAITTDCLQILAYGNQESKLIILASGGPQAL-----VNIMRT-YTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGM 229 (529)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH-----HHHHHH-CCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHH
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHH-----HHHHHh-CChHHHHHHHHHHHHHHhcCcccHHHHHHCCCH
Confidence 4666777777777766421110 01112111 122332 2334566667777777765311 1111 2467
Q ss_pred HHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhcCCCCCChHHHHHHHHHhhcccc-hhhhHHHHHHHHHHHHhhhhhhc
Q 005697 293 SSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANENVAD 371 (682)
Q Consensus 293 ~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~~l~p~l~~llq~Ll~~L~~e~-~e~d~l~~~L~~iVe~~~e~i~P 371 (682)
+.+++.+.+++ ..||..|+.+|.++..+..-......++..|++.+..+. .-......+|..+.....+....
T Consensus 230 ~~L~~ll~~~~------~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~ 303 (529)
T 1jdh_A 230 QALGLHLTDPS------QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMM 303 (529)
T ss_dssp HHHHTTTTSSC------HHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHhCCC------hHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 77888887776 789999999999998864222234567777777554432 11223344455443321112111
Q ss_pred h-HHHHHHHHHHHHHHhcCCCCCCChhhHHhHHHHHHHHH
Q 005697 372 H-IPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMA 410 (682)
Q Consensus 372 ~-a~~L~~~L~~~f~k~~~~~~~~~~~~~~~~~~aLa~~~ 410 (682)
. ....++.|+..+... .+ .+.+.+.+..+|+.++
T Consensus 304 ~~~~~~v~~L~~ll~~~-~~----~~~v~~~a~~~L~nl~ 338 (529)
T 1jdh_A 304 VCQVGGIEALVRTVLRA-GD----REDITEPAICALRHLT 338 (529)
T ss_dssp HHHTTHHHHHHHHHHHH-TT----CHHHHHHHHHHHHHHT
T ss_pred HHHcCChHHHHHHHHcc-CC----HHHHHHHHHHHHHHHH
Confidence 1 112344444444322 11 1357777777776654
No 82
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=66.87 E-value=18 Score=42.57 Aligned_cols=95 Identities=15% Similarity=-0.032 Sum_probs=66.8
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhH-HHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhc---------CChhhHHH
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFT-ANLVRSRVLPLYSVSVCLPYLVASANWILGELASC---------LPEDISAD 290 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~l-e~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~---------l~~~~l~~ 290 (682)
+...++.|+.+++.++..- + .++++ +.-. ..+...+. +..+.+|.+|.+.+.+.+.. +....+..
T Consensus 303 ~~~~q~~A~~al~~aa~~~-~-~R~~I~~~gv-~~L~~Ll~--s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~ 377 (810)
T 3now_A 303 DELQQRVACECLIAASSKK-D-KAKALCEQGV-DILKRLYH--SKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALK 377 (810)
T ss_dssp CHHHHHHHHHHHHHHTTSH-H-HHHTTHHHHH-HHHHHHTT--CSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHH
T ss_pred CHHHHHHHHHHHHHHcCCc-H-HHHHHHHcCc-HHHHHHHc--CCCHHHHHHHHHHHHHhccccccCccccchhhccHHH
Confidence 4456788899999877662 2 22222 2222 33444455 56688999999999999742 22334678
Q ss_pred HHHHHHHhhccC--CCCCCCCcchhHHHHHHHHHhhhc
Q 005697 291 VYSSLLKALQML--DKGDTSCYPVRASAAGAIVGLLEN 326 (682)
Q Consensus 291 il~~ll~~L~d~--~~~~~~~~pVrv~Aa~AL~~~l~~ 326 (682)
+.+.+.+.|.++ + .-||-.|+.||..+...
T Consensus 378 Lv~~l~~lL~~~~~d------~~v~~~AveaLayLS~~ 409 (810)
T 3now_A 378 LAEACRRFLIKPGKD------KDIRRWAADGLAYLTLD 409 (810)
T ss_dssp HHHHHHHHHHCSSCC------SSHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcCCCCC------HHHHHHHHHHHHHHhCC
Confidence 888999999887 5 67999999999999765
No 83
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=65.42 E-value=1.5e+02 Score=33.45 Aligned_cols=200 Identities=12% Similarity=0.062 Sum_probs=109.7
Q ss_pred cchhHHHHHHHHHHhhcCCCCCCCCCCCcccccccccccccccccccchhhHHHHHHHHhcCCCCCCCCCccccchhhHH
Q 005697 147 FTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYF 226 (682)
Q Consensus 147 ~S~R~aA~~lL~~L~~~~~~~~~~~~~~~~~~~kr~k~~~~k~~~~~~~l~~ili~~~L~~~~~~~~~~~~~~~~~~~ke 226 (682)
.-.|..|.--|++|...-|.+++.. ... ++ + +.--+++.=.|-+|..=.+ +.--+..+|
T Consensus 188 WEiRHGAALGLREILR~hG~GAGR~----------~~~--N~---D--LAvRLLCVLALDRFGDYVS----DqVVAPVRE 246 (800)
T 3oc3_A 188 WYKRHGAFLAFAAMFSEIDNGGDIQ----------IRV--DS---K--LFSKIYEILVTDKFNDFVD----DRTVAPVRD 246 (800)
T ss_dssp HHHHHHHHHHHHHHHHHCC----CC----------CCC--CT---T--HHHHHHHHHHHBCCBBCSS----SSCBCHHHH
T ss_pred hhhhhHHHHHHHHHHHHhccCCcee----------ccc--cH---H--HHHHHHHHHHhcccccccc----CeeeeehHH
Confidence 3578888888888765544322211 000 00 1 2222233335555543221 223567899
Q ss_pred HHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCC
Q 005697 227 GVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGD 306 (682)
Q Consensus 227 gaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~d~~~~~ 306 (682)
+|=.++|++ ..+... -..+..++ ..+. .+.=-.|--+.--+..+.+.+.. +..+++.++.+|.|+|
T Consensus 247 TaAQtLGaL-~hLp~e-~~IL~qLV-----~~l~--~~~WEVRHGGLLGLKYL~DLL~~--Ld~Vv~aVL~GL~D~D--- 312 (800)
T 3oc3_A 247 AAAYLLSRI-YPLIGP-NDIIEQLV-----GFLD--SGDWQVQFSGLIALGYLKEFVED--KDGLCRKLVSLLSSPD--- 312 (800)
T ss_dssp HHHHHHHHH-TTTSCS-CCHHHHHT-----TGGG--CSCHHHHHHHHHHHHHTGGGCCC--HHHHHHHHHHHTTCSS---
T ss_pred HHHHHHHHH-HhCChh-HHHHHHHH-----hhcC--CCCeeehhhhHHHHHHHHHHHHH--HHHHHHHHHhhcCCcc---
Confidence 999999998 555432 11233333 1223 22212333344344444333433 8999999999999987
Q ss_pred CCCcchhHHHHHHHHHhhhcCCCCCChHHHHHHHHHhhcccc---hhhhHHHHHHHHHHHHhhh---------hhhchHH
Q 005697 307 TSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYED---EENSILFELLSSVVGAANE---------NVADHIP 374 (682)
Q Consensus 307 ~~~~pVrv~Aa~AL~~~l~~~~l~p~l~~llq~Ll~~L~~e~---~e~d~l~~~L~~iVe~~~e---------~i~P~a~ 374 (682)
==||..||.+|..+. .+..+..++..+-.+|.+.+ ...-.++..|..++..-.. .+-||..
T Consensus 313 ---DDVRAVAAetLiPIA----~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLR 385 (800)
T 3oc3_A 313 ---EDIKLLSAELLCHFP----ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFT 385 (800)
T ss_dssp ---HHHHHHHHHHHTTSC----CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGT
T ss_pred ---cHHHHHHHHHhhhhc----chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHHHHHhhhc
Confidence 259999999999887 34557777777777776644 2344567777776654332 1455554
Q ss_pred HHHHHHHHHHHHhc
Q 005697 375 YIVSSLVAAISKHM 388 (682)
Q Consensus 375 ~L~~~L~~~f~k~~ 388 (682)
.-++....+.++.+
T Consensus 386 HtITSVR~AVL~TL 399 (800)
T 3oc3_A 386 SPVPEVRTSILNMV 399 (800)
T ss_dssp CSSHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHH
Confidence 44444444444443
No 84
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=64.76 E-value=1.1e+02 Score=36.56 Aligned_cols=101 Identities=13% Similarity=0.032 Sum_probs=72.3
Q ss_pred CCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhh--cCCCCCChHHHHHHH
Q 005697 263 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLE--NDYMPPEWYPLLQVI 340 (682)
Q Consensus 263 s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~--~~~l~p~l~~llq~L 340 (682)
+..|.+|..|.+.+|..+.--+. .+++..+.+.+.|++ .-||-.|+.||....- ++...|.+..++..|
T Consensus 623 ~~d~~VR~gAalALGli~aGn~~---~~aid~L~~L~~D~d------~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L 693 (963)
T 4ady_A 623 SHNAHVRCGTAFALGIACAGKGL---QSAIDVLDPLTKDPV------DFVRQAAMIALSMILIQQTEKLNPQVADINKNF 693 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTSSSCC---HHHHHHHHHHHTCSS------HHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCc---HHHHHHHHHHccCCC------HHHHHHHHHHHHHHhcCCccccchHHHHHHHHH
Confidence 67899999999999998653332 456666666777887 7899999999998875 367889999999999
Q ss_pred HHhhcccchhhhHH--HHHHHHHHHHhhhh--hhch
Q 005697 341 VGRIGYEDEENSIL--FELLSSVVGAANEN--VADH 372 (682)
Q Consensus 341 l~~L~~e~~e~d~l--~~~L~~iVe~~~e~--i~P~ 372 (682)
.+.+.+...+.... ...=+-++..++.. |.||
T Consensus 694 ~~~~~dk~~d~~~~fga~iAqGll~aG~~n~tis~~ 729 (963)
T 4ady_A 694 LSVITNKHQEGLAKFGACVAQGIMNAGGRNVTIQLE 729 (963)
T ss_dssp HHHHHCSSSCHHHHHHHHHHHHHHTTGGGTEEECSB
T ss_pred HHHHhcccccHHHHHHHHHHHHHHhcCCCceEEEee
Confidence 98665421133333 33334557777766 4564
No 85
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=64.51 E-value=1.8e+02 Score=32.39 Aligned_cols=178 Identities=15% Similarity=0.033 Sum_probs=91.5
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCC-hhhH--HHHHHHHHH
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLP-EDIS--ADVYSSLLK 297 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~-~~~l--~~il~~ll~ 297 (682)
+++.+..+..+++.++..-.+.+....+.=....++..+.. ....-++..|+.++..++.+-. .+.+ ..+++.+++
T Consensus 153 ~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~-~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ 231 (644)
T 2z6h_A 153 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT-YTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGL 231 (644)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTT-CCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHc-CChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHH
Confidence 45677777777877774211101111110011112223342 2334566677777777765321 1111 135677888
Q ss_pred hhccCCCCCCCCcchhHHHHHHHHHhhhcCCCCCChHHHHHHHHHhhcccc-hhhhHHHHHHHHHHHHhhhhhhc-hHHH
Q 005697 298 ALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANENVAD-HIPY 375 (682)
Q Consensus 298 ~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~~l~p~l~~llq~Ll~~L~~e~-~e~d~l~~~L~~iVe~~~e~i~P-~a~~ 375 (682)
.+.+++ ..+|..|+.+|.++..+..-.....+++..|++.|.... .-.+....+|..+.....+.... ....
T Consensus 232 ll~~~~------~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g 305 (644)
T 2z6h_A 232 HLTDPS------QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 305 (644)
T ss_dssp TTTCSC------HHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHhcCC------HHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 887766 789999999999999864222345677888888555442 11223344454443322121111 1122
Q ss_pred HHHHHHHHHHHhcCCCCCCChhhHHhHHHHHHHHH
Q 005697 376 IVSSLVAAISKHMHPSSEPWPQVVERGFAALALMA 410 (682)
Q Consensus 376 L~~~L~~~f~k~~~~~~~~~~~~~~~~~~aLa~~~ 410 (682)
.++.|+..+... . +. +.+.+.+..+|+.++
T Consensus 306 ~v~~Lv~lL~~~-~---~~-~~v~~~a~~aL~nL~ 335 (644)
T 2z6h_A 306 GIEALVRTVLRA-G---DR-EDITEPAICALRHLT 335 (644)
T ss_dssp HHHHHHHHHHHH-T---TC-HHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcc-C---Cc-HHHHHHHHHHHHHHh
Confidence 445555544322 1 11 256677777776664
No 86
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=61.34 E-value=33 Score=34.07 Aligned_cols=91 Identities=8% Similarity=-0.092 Sum_probs=59.3
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhc-CChhhHHHHHHHHHHh
Q 005697 220 RIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASC-LPEDISADVYSSLLKA 298 (682)
Q Consensus 220 ~~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~-l~~~~l~~il~~ll~~ 298 (682)
++|+.+|-+-.+++.+.... ..+. ....+..-.. ++++.+|.-|....--|+.. ........+++.+-+.
T Consensus 116 ~~WrVre~lA~a~~~~~~~~---~pe~----~l~~~~~W~~--d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L 186 (240)
T 3l9t_A 116 NNWRVQEVLAKAFDEFCKKI---EYKK----ALPIIDEWLK--SSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADL 186 (240)
T ss_dssp SCHHHHHHHHHHHHHHHHHH---CTTT----THHHHHHHHH--CSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTT
T ss_pred CCccHHHHHHHHHHHHHHhc---CHHH----HHHHHHHHhc--CCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHh
Confidence 48999999888877655411 1111 1112334445 79999999998877666654 2344556677777677
Q ss_pred hccCCCCCCCCcchhHHHHHHHHHhhh
Q 005697 299 LQMLDKGDTSCYPVRASAAGAIVGLLE 325 (682)
Q Consensus 299 L~d~~~~~~~~~pVrv~Aa~AL~~~l~ 325 (682)
..|++ .=||-+-|-+|..+-.
T Consensus 187 ~~D~s------~yVrKSVan~LrD~SK 207 (240)
T 3l9t_A 187 KEDVS------EYVRKSVGNALRDISK 207 (240)
T ss_dssp TTCSC------HHHHHHHHHHHHHHHT
T ss_pred cCChH------HHHHHHHHHHHHHHhh
Confidence 77776 7788888888876544
No 87
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=58.94 E-value=48 Score=34.41 Aligned_cols=79 Identities=14% Similarity=0.217 Sum_probs=61.5
Q ss_pred hHHHHHHHHHhhcccc--hhhhHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHhcCCCCCCChhhHHhHHHHHHHHH
Q 005697 333 WYPLLQVIVGRIGYED--EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMA 410 (682)
Q Consensus 333 l~~llq~Ll~~L~~e~--~e~d~l~~~L~~iVe~~~e~i~P~a~~L~~~L~~~f~k~~~~~~~~~~~~~~~~~~aLa~~~ 410 (682)
++|+++..+..-.+-. .-...++.++.++|.+.++.+.|+.+.+...+.+.-+....++-+..|+.+..-|+-|.++.
T Consensus 71 ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~ 150 (321)
T 1w9c_A 71 VPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVN 150 (321)
T ss_dssp HHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHH
Confidence 4566655554332211 12345788999999999999999999999999999999998887778998888888887777
Q ss_pred H
Q 005697 411 Q 411 (682)
Q Consensus 411 ~ 411 (682)
.
T Consensus 151 ~ 151 (321)
T 1w9c_A 151 S 151 (321)
T ss_dssp H
T ss_pred H
Confidence 6
No 88
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=56.40 E-value=23 Score=37.20 Aligned_cols=96 Identities=19% Similarity=0.179 Sum_probs=58.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhhcchhH-HHHHHHhhhhcccCCCCCc----ccHHHHHHHHHHhhhc--CChhhHHH----
Q 005697 222 QKDYFGVLMAYGGLQEFLREQKSEFT-ANLVRSRVLPLYSVSVCLP----YLVASANWILGELASC--LPEDISAD---- 290 (682)
Q Consensus 222 ~~~kegaL~~lg~la~~l~~~~~~~l-e~fL~~~VlP~l~~~s~~p----~LrarA~~~l~~f~~~--l~~~~l~~---- 290 (682)
...++.|+.+++.|+....+.+.... ..-....+...+. ++.+ -++..|+|++..++.. -+++....
T Consensus 185 ~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~--~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~ 262 (354)
T 3nmw_A 185 ESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLT--YRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN 262 (354)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTT--CCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhc--cCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHc
Confidence 45577888888888863322111111 0001111122234 2222 3788999999999863 23333322
Q ss_pred -HHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhh
Q 005697 291 -VYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLE 325 (682)
Q Consensus 291 -il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~ 325 (682)
.++.+++.|.+++ .-|+..|+.||.++..
T Consensus 263 g~i~~Lv~lL~~~~------~~v~~~A~~aL~nLa~ 292 (354)
T 3nmw_A 263 NCLQTLLQHLKSHS------LTIVSNACGTLWNLSA 292 (354)
T ss_dssp THHHHHHHHTTCSC------HHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHcCCC------hHHHHHHHHHHHHHhC
Confidence 5788889998776 7899999999999984
No 89
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=56.36 E-value=73 Score=31.80 Aligned_cols=94 Identities=13% Similarity=0.058 Sum_probs=69.5
Q ss_pred chhhHHHHHHHHHHHHHHHhhh-cchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhc--CChhhHHHHHHHHHH
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQ-KSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASC--LPEDISADVYSSLLK 297 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~-~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~--l~~~~l~~il~~ll~ 297 (682)
+...+.-+|.+++-+-....+. ....++.+|-..| ..+. +++--+--+|..+++..-.. ++++.+..+.+++..
T Consensus 46 D~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI-~llk--~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~d 122 (265)
T 3b2a_A 46 DETTRLRAFVALGEILKRADSDLRMMVLERHLDVFI-NALS--QENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVS 122 (265)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH-HTCC--STTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH-HHHh--ccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 5677888888887655543221 1233455655443 3334 56777888999999998775 689999999999999
Q ss_pred hhccCCCCCCCCcchhHHHHHHHHHh
Q 005697 298 ALQMLDKGDTSCYPVRASAAGAIVGL 323 (682)
Q Consensus 298 ~L~d~~~~~~~~~pVrv~Aa~AL~~~ 323 (682)
.+..++ -+++.+||..++.+
T Consensus 123 lik~~~------~il~~eaae~Lgkl 142 (265)
T 3b2a_A 123 LLESPD------DMMRIETIDVLSKL 142 (265)
T ss_dssp HTTSCC------HHHHHHHHHHHHHC
T ss_pred HhcCCC------chHHHHHHHHhCcC
Confidence 999777 89999999999987
No 90
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=56.34 E-value=1.5e+02 Score=28.69 Aligned_cols=164 Identities=11% Similarity=0.148 Sum_probs=98.3
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhc
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQ 300 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~ 300 (682)
-|-..--|+..+..++.... +..++.+... +-.+.. |..--|-......+|+.+. ..|+....+.+.+.....
T Consensus 45 lwtV~kNAl~vi~~i~~~~~----el~epl~~kL-~vm~~k-sEaIpltqeIa~a~G~la~-i~Pe~v~~vVp~lfanyr 117 (253)
T 2db0_A 45 LWTVVKNAISIIMVIAKTRE----DLYEPMLKKL-FSLLKK-SEAIPLTQEIAKAFGQMAK-EKPELVKSMIPVLFANYR 117 (253)
T ss_dssp CHHHHHHHHHHHHHHHTTCG----GGHHHHHHHH-HHHHHH-CCSHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhHHHHHHHHHHHhH----HHHHHHHHHH-HHHHhh-cccCchHHHHHHHHhHHHH-hCHHHHHhhHHHHHHHHh
Confidence 68777778888877665543 3445555433 222332 3333342333344555554 468888889998888887
Q ss_pred cCCCCCCCCcchhHHHHHHHHHhhhcCCCCCChHHHHHHHHHhhcccchhhhHH--HHHHHHHHHHhhhhhhchHHHHHH
Q 005697 301 MLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSIL--FELLSSVVGAANENVADHIPYIVS 378 (682)
Q Consensus 301 d~~~~~~~~~pVrv~Aa~AL~~~l~~~~l~p~l~~llq~Ll~~L~~e~~e~d~l--~~~L~~iVe~~~e~i~P~a~~L~~ 378 (682)
-.+ .-.|+--+.||.....+. +..++.+...++..+.... +.|.+ ..-++.+-++.-+-++||.|.|..
T Consensus 118 igd------~kikIn~~yaLeeIaran--P~l~~~v~rdi~smltskd-~~Dkl~aLnFi~alGen~~~yv~PfLprL~a 188 (253)
T 2db0_A 118 IGD------EKTKINVSYALEEIAKAN--PMLMASIVRDFMSMLSSKN-REDKLTALNFIEAMGENSFKYVNPFLPRIIN 188 (253)
T ss_dssp CCS------HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHTSCSS-HHHHHHHHHHHHTCCTTTHHHHGGGHHHHHG
T ss_pred cCC------ccceecHHHHHHHHHHhC--hHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHhccCccccCcchHHHHH
Confidence 666 779999999999988742 1234566777777555443 33433 444555555566668999988844
Q ss_pred HHHHHHHHhcCCCCCCChhhHHhHHHHHHHHHH
Q 005697 379 SLVAAISKHMHPSSEPWPQVVERGFAALALMAQ 411 (682)
Q Consensus 379 ~L~~~f~k~~~~~~~~~~~~~~~~~~aLa~~~~ 411 (682)
. +.+.++ -+...+.++|+-+|.
T Consensus 189 L--------L~D~de---iVRaSaVEtL~~lA~ 210 (253)
T 2db0_A 189 L--------LHDGDE---IVRASAVEALVHLAT 210 (253)
T ss_dssp G--------GGCSSH---HHHHHHHHHHHHHHT
T ss_pred H--------HcCcch---hhhHHHHHHHHHHHH
Confidence 3 344432 244445566654444
No 91
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=54.69 E-value=63 Score=37.50 Aligned_cols=138 Identities=14% Similarity=0.055 Sum_probs=76.2
Q ss_pred hhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhcC---CCCCC
Q 005697 256 LPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND---YMPPE 332 (682)
Q Consensus 256 lP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~---~l~p~ 332 (682)
+..|. ++....|..+...+..-.. .......++.+++.|.+++ ..||..|+.+|..+..++ ..-..
T Consensus 121 v~~L~--~~~~~~r~~a~~~l~~~~~---~~i~~g~ip~Lv~lL~~~d------~~vr~~A~~~L~~L~~~~~~~~~i~~ 189 (780)
T 2z6g_A 121 VQRLA--EPSQMLKHAVVNLINYQDD---AELATRAIPELTKLLNDED------QVVVNKAAVMVHQLSKKEASRHAIMR 189 (780)
T ss_dssp -------CCSCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCSC------HHHHHHHHHHHHHHHTSHHHHHHHTT
T ss_pred HHHhc--CccHHHHHHHHHHHHhhhH---HHHHhCCHHHHHHHHCCCC------HHHHHHHHHHHHHHhCCChhHHHHHh
Confidence 34455 6778888887777764422 2334667888888888776 789999999999998752 00011
Q ss_pred hHHHHHHHHHhhcccc--hhhhHHHHHHHHHHHHhhhhhhchHHHHH-HHHHHHHHHhcCCCCCCChhhHHhHHHHHHHH
Q 005697 333 WYPLLQVIVGRIGYED--EENSILFELLSSVVGAANENVADHIPYIV-SSLVAAISKHMHPSSEPWPQVVERGFAALALM 409 (682)
Q Consensus 333 l~~llq~Ll~~L~~e~--~e~d~l~~~L~~iVe~~~e~i~P~a~~L~-~~L~~~f~k~~~~~~~~~~~~~~~~~~aLa~~ 409 (682)
.+.++..|+..|.+.. .-......+|..+... .+. .. .+. ...+..+.+++.... +.+...++.+|+.+
T Consensus 190 ~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~-~~~-~~---~i~~~g~I~~Lv~lL~~~~---~~v~~~A~~aL~nL 261 (780)
T 2z6g_A 190 SPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH-REG-LL---AIFKSGGIPALVNMLGSPV---DSVLFHAITTLHNL 261 (780)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-HHH-HH---HHHHTTHHHHHHHHTTCSC---HHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chh-HH---HHHHcCCHHHHHHHHcCCC---HHHHHHHHHHHHHH
Confidence 2345555555444331 1122334455543221 111 11 111 123444555555542 57888888888887
Q ss_pred HHh
Q 005697 410 AQS 412 (682)
Q Consensus 410 ~~~ 412 (682)
+..
T Consensus 262 a~~ 264 (780)
T 2z6g_A 262 LLH 264 (780)
T ss_dssp HHH
T ss_pred hCC
Confidence 764
No 92
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=53.52 E-value=87 Score=38.36 Aligned_cols=76 Identities=8% Similarity=0.096 Sum_probs=56.5
Q ss_pred cchhHHHHHHHHHhhhc-CCCCCChHHHHHHHHHhhccc-----------c-hh-hhHHHHHHHHHHHHhhhhhhchHHH
Q 005697 310 YPVRASAAGAIVGLLEN-DYMPPEWYPLLQVIVGRIGYE-----------D-EE-NSILFELLSSVVGAANENVADHIPY 375 (682)
Q Consensus 310 ~pVrv~Aa~AL~~~l~~-~~l~p~l~~llq~Ll~~L~~e-----------~-~e-~d~l~~~L~~iVe~~~e~i~P~a~~ 375 (682)
+.+|..+...+..+.+. ..-+.+++++++.++..+... . .+ ......++.+++..+++.+.||..+
T Consensus 546 p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~ 625 (1204)
T 3a6p_A 546 PLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDM 625 (1204)
T ss_dssp HHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 56888888887776654 233568999999999866431 0 01 1224667889999999999999999
Q ss_pred HHHHHHHHHH
Q 005697 376 IVSSLVAAIS 385 (682)
Q Consensus 376 L~~~L~~~f~ 385 (682)
|.+.+...+.
T Consensus 626 i~~~~~~~l~ 635 (1204)
T 3a6p_A 626 LYNHVKQLLS 635 (1204)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988885
No 93
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=53.06 E-value=24 Score=36.95 Aligned_cols=96 Identities=13% Similarity=0.016 Sum_probs=61.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhh--cchh-HHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHH-----HHHH
Q 005697 222 QKDYFGVLMAYGGLQEFLREQ--KSEF-TANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISA-----DVYS 293 (682)
Q Consensus 222 ~~~kegaL~~lg~la~~l~~~--~~~~-le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~-----~il~ 293 (682)
...++.|..++..++..+... .+.. .+.-....++..+. ++..-++..|+|+++.++.. +++... .+++
T Consensus 232 ~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~i~ 308 (354)
T 3nmw_A 232 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK--SHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVS 308 (354)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHTSS-CHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHc--CCChHHHHHHHHHHHHHhCC-CHHHHHHHHHCCCHH
Confidence 345677777777777643211 1111 11111223334455 56778999999999999753 233222 2467
Q ss_pred HHHHhhccCCCCCCCCcchhHHHHHHHHHhhhc
Q 005697 294 SLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 326 (682)
Q Consensus 294 ~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~ 326 (682)
.+++.|.+.+ ..+|-.|+.||.++..+
T Consensus 309 ~Lv~LL~s~~------~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 309 MLKNLIHSKH------KMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHTTTTCSS------HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCC------HHHHHHHHHHHHHHHcC
Confidence 7788887776 78999999999999886
No 94
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=47.74 E-value=39 Score=36.83 Aligned_cols=95 Identities=13% Similarity=0.025 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHHHHHHHhhh--cch-hHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHH-----HHHHH
Q 005697 223 KDYFGVLMAYGGLQEFLREQ--KSE-FTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISA-----DVYSS 294 (682)
Q Consensus 223 ~~kegaL~~lg~la~~l~~~--~~~-~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~-----~il~~ 294 (682)
..++-|..++..++..+... .+. ..+.-....++..+. ++..-++..|+|+++.++.. +++... .+++.
T Consensus 349 ~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~--~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~I~~ 425 (458)
T 3nmz_A 349 AIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK--SHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSM 425 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSS--CSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHc--CCChHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHH
Confidence 45666667777777643221 111 111111223334455 56777999999999999753 233222 34667
Q ss_pred HHHhhccCCCCCCCCcchhHHHHHHHHHhhhc
Q 005697 295 LLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 326 (682)
Q Consensus 295 ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~ 326 (682)
+++.|...+ .-+|-.|+.||.+++.+
T Consensus 426 Lv~LL~s~~------~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 426 LKNLIHSKH------KMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHTTTTCSS------HHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCC------HHHHHHHHHHHHHHHcC
Confidence 777777666 77999999999999876
No 95
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=45.82 E-value=51 Score=35.84 Aligned_cols=99 Identities=18% Similarity=0.163 Sum_probs=59.7
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcchhH-HHHHHHhhhhcccCCCCCc--ccHHHHHHHHHHhhhc--CChhhHHH-----
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQKSEFT-ANLVRSRVLPLYSVSVCLP--YLVASANWILGELASC--LPEDISAD----- 290 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~~~~l-e~fL~~~VlP~l~~~s~~p--~LrarA~~~l~~f~~~--l~~~~l~~----- 290 (682)
+...++.|+.+++.|+....+.+.... ..-....+...+...++.+ -++..|+|++...+.. -+++....
T Consensus 300 ~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G 379 (458)
T 3nmz_A 300 KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN 379 (458)
T ss_dssp SHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcc
Confidence 345678888899988874322111111 0001111122234211122 3788999999999863 23333333
Q ss_pred HHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhh
Q 005697 291 VYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLE 325 (682)
Q Consensus 291 il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~ 325 (682)
.++.+++.|.+.+ .-|+..|+.||.++..
T Consensus 380 ~i~~Lv~LL~~~~------~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 380 CLQTLLQHLKSHS------LTIVSNACGTLWNLSA 408 (458)
T ss_dssp HHHHHHHHSSCSC------HHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHcCCC------hHHHHHHHHHHHHHHc
Confidence 4677888998776 7799999999999874
No 96
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=43.59 E-value=69 Score=34.35 Aligned_cols=62 Identities=16% Similarity=0.050 Sum_probs=47.0
Q ss_pred hcccCCCCCcccHHHHHHHHHHhhhcCCh-h-hH--HHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhc
Q 005697 257 PLYSVSVCLPYLVASANWILGELASCLPE-D-IS--ADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 326 (682)
Q Consensus 257 P~l~~~s~~p~LrarA~~~l~~f~~~l~~-~-~l--~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~ 326 (682)
..|. ++++-+|..|++.++.++..-++ . .+ ...++.+++.|.+++ .-++..|+.||.++...
T Consensus 9 ~~L~--s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~------~~~~~~A~~aL~nLa~~ 74 (457)
T 1xm9_A 9 QYLS--SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPN------QNVQQAAAGALRNLVFR 74 (457)
T ss_dssp HHHH--SSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSC------HHHHHHHHHHHHHHHSS
T ss_pred HHHC--CCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCC------HHHHHHHHHHHHHHhcC
Confidence 3455 67888999999999999753221 1 11 345788899998776 78999999999999864
No 97
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=40.81 E-value=2.7e+02 Score=31.13 Aligned_cols=119 Identities=12% Similarity=-0.021 Sum_probs=74.4
Q ss_pred chhhHHHHHHHHHHHHHHHhhhc---------------------chhHHHHH----HHhhhhcccCCCCCcccHHHHHHH
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQK---------------------SEFTANLV----RSRVLPLYSVSVCLPYLVASANWI 275 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~---------------------~~~le~fL----~~~VlP~l~~~s~~p~LrarA~~~ 275 (682)
+.+.++-|+.++..|+..+.... ..-++.+. ...++..+.. +..+-++..|+|+
T Consensus 254 ~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~-s~~~~v~E~Aa~A 332 (584)
T 3l6x_A 254 DSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKE-SKTPAILEASAGA 332 (584)
T ss_dssp SCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHH-CCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHcc-CCCHHHHHHHHHH
Confidence 34678888999988887653210 00011111 1223334432 4578899999999
Q ss_pred HHHhhhcC---Chh---hH--HHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhcCCCCCC-hHHHHHHHHHhhcc
Q 005697 276 LGELASCL---PED---IS--ADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPE-WYPLLQVIVGRIGY 346 (682)
Q Consensus 276 l~~f~~~l---~~~---~l--~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~~l~p~-l~~llq~Ll~~L~~ 346 (682)
++.++..- +.. .+ ...++.+++.|..++ ..|+..|+.||.++..+...+.. -...+..|+..|..
T Consensus 333 L~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~------~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~ 406 (584)
T 3l6x_A 333 IQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEH------ERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPG 406 (584)
T ss_dssp HHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSC------HHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCC------HHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcC
Confidence 99997542 111 11 356888999998887 79999999999999887532221 13355666665544
No 98
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=35.15 E-value=61 Score=36.46 Aligned_cols=112 Identities=12% Similarity=-0.024 Sum_probs=65.6
Q ss_pred hhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHH-----HHHHHHH
Q 005697 222 QKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISA-----DVYSSLL 296 (682)
Q Consensus 222 ~~~kegaL~~lg~la~~l~~~~~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~-----~il~~ll 296 (682)
...+..|..++..++..-.+.+....+.--...++..|. ++++-+|..|+|.++.++..-++++-. ..++.++
T Consensus 62 ~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~--s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV 139 (584)
T 3l6x_A 62 DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLD--HPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALV 139 (584)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGG--CSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHC--CCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHH
Confidence 344555556676666321111111111111122334466 789999999999999998642333322 2477888
Q ss_pred HhhccCCCCCCCCcchhHHHHHHHHHhhhcCC-----CCCChHHHHHHH
Q 005697 297 KALQMLDKGDTSCYPVRASAAGAIVGLLENDY-----MPPEWYPLLQVI 340 (682)
Q Consensus 297 ~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~~-----l~p~l~~llq~L 340 (682)
+.|.... +.-++-.|+.||.++..++. +..-+++|++.+
T Consensus 140 ~LL~s~~-----~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL 183 (584)
T 3l6x_A 140 RLLRKAR-----DMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEV 183 (584)
T ss_dssp HHHHHCC-----SHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHT
T ss_pred HHHcCCC-----CHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHH
Confidence 8888643 16789999999999987642 233355555544
No 99
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=34.80 E-value=2.3e+02 Score=28.42 Aligned_cols=95 Identities=17% Similarity=0.078 Sum_probs=67.0
Q ss_pred chhhHHHHHHHHHHHHHHHhhhc---chhHHHHHHHhhhhcccCCCCCcccHHHHHHHHHHhhhcCChhhHHHHHHHHHH
Q 005697 221 IQKDYFGVLMAYGGLQEFLREQK---SEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLK 297 (682)
Q Consensus 221 ~~~~kegaL~~lg~la~~l~~~~---~~~le~fL~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~il~~ll~ 297 (682)
|.+.--.+|-++..+.+.+.+.. .++-...+..+++--+. .+..-+|..+-.++..+....++.. +++-+++
T Consensus 100 N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlG--d~k~~vR~~~r~il~~l~~v~~~~~---v~~~l~~ 174 (266)
T 2of3_A 100 NPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTG--EAKDNMRTSVRDIVNVLSDVVGPLK---MTPMLLD 174 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGG--CSSHHHHHHHHHHHHHHHHHHCHHH---HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHCCHHH---HHHHHHH
Confidence 55666678888888777776531 23322344444444455 4556679999999988887666643 5666778
Q ss_pred hhccCCCCCCCCcchhHHHHHHHHHhhhc
Q 005697 298 ALQMLDKGDTSCYPVRASAAGAIVGLLEN 326 (682)
Q Consensus 298 ~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~ 326 (682)
++...+ .-+|.+....|..+++.
T Consensus 175 g~ksKN------~R~R~e~l~~l~~li~~ 197 (266)
T 2of3_A 175 ALKSKN------ARQRSECLLVIEYYITN 197 (266)
T ss_dssp GGGCSC------HHHHHHHHHHHHHHHHH
T ss_pred HHccCC------HHHHHHHHHHHHHHHHh
Confidence 888877 89999999999999986
No 100
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=33.45 E-value=40 Score=40.53 Aligned_cols=112 Identities=13% Similarity=0.050 Sum_probs=73.7
Q ss_pred CCCcccHHHHHHHHHHhh--hc--CChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhcC-CCCCChHHHH
Q 005697 263 VCLPYLVASANWILGELA--SC--LPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND-YMPPEWYPLL 337 (682)
Q Consensus 263 s~~p~LrarA~~~l~~f~--~~--l~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~-~l~p~l~~ll 337 (682)
+++- -|.+++.++..|. +. +.++....+++.++++|.|++ .+=||..||.+|..+++.. .. ....+++
T Consensus 813 s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q-----~~EVRe~Aa~tLsgll~c~~~~-~~~~~li 885 (997)
T 1vsy_5 813 LSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQ-----FVEVRVRAASILSDIVHNWKEE-QPLLSLI 885 (997)
T ss_dssp SCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSS-----CHHHHHHHHHHHHHHHHSCCSH-HHHHHHH
T ss_pred CCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCc-----cHHHHHHHHHHHHHHHHcCCch-hhHHHHH
Confidence 3444 8888888876654 43 466666899999999999886 2459999999999999854 22 2233555
Q ss_pred HHHHHhhcc--cc-----------hhhhHHHHHHHHHHHHhhhhh--hchHHHHHHHHH
Q 005697 338 QVIVGRIGY--ED-----------EENSILFELLSSVVGAANENV--ADHIPYIVSSLV 381 (682)
Q Consensus 338 q~Ll~~L~~--e~-----------~e~d~l~~~L~~iVe~~~e~i--~P~a~~L~~~L~ 381 (682)
+.+.+.+.+ .. ..-..-+-.|..+|..|.=.+ =||.|++...|+
T Consensus 886 ~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La 944 (997)
T 1vsy_5 886 ERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLS 944 (997)
T ss_dssp HHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHH
T ss_pred HHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHH
Confidence 555443322 00 022334666788888888776 337777765553
No 101
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=31.36 E-value=3.5e+02 Score=25.77 Aligned_cols=114 Identities=9% Similarity=0.124 Sum_probs=64.7
Q ss_pred cHHHHHHHHHHhhhc--CChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhcC--CCCCChHHHHHHHHHh
Q 005697 268 LVASANWILGELASC--LPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND--YMPPEWYPLLQVIVGR 343 (682)
Q Consensus 268 LrarA~~~l~~f~~~--l~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~--~l~p~l~~llq~Ll~~ 343 (682)
+|.+|+..+..=... +=|-...-+.+++...+. + +.+=.+-....+.+++|+ .+.||+-+++-.++.+
T Consensus 24 ~r~~aL~sL~~D~gL~~LlPyf~~fI~~~v~~nl~--~------l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtC 95 (196)
T 4atg_A 24 MKDIAIECLEKESGLQQLVPYFIQHISELILKSFK--E------AEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTC 95 (196)
T ss_dssp THHHHHHHHHHCSSCTTTHHHHHHHHHHHHHHCTT--C------HHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCChhhhHHHHHHHHHHHHHhccC--C------HHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH
Confidence 466655544443321 113333344445555543 3 555566667777778876 7789988888888776
Q ss_pred hcccc-hh---hhHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHhcCCCCC
Q 005697 344 IGYED-EE---NSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSE 393 (682)
Q Consensus 344 L~~e~-~e---~d~l~~~L~~iVe~~~e~i~P~a~~L~~~L~~~f~k~~~~~~~ 393 (682)
+-... .. -|...+.|..++.+|++.-. .+-+++..++.|.+.++..
T Consensus 96 ll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~----~L~~RI~~tl~k~l~dp~~ 145 (196)
T 4atg_A 96 VIGKSIVDDDVRKMSADIVKYIYDTYSRSYK----TLAPRVLKTLKGVWMDPNR 145 (196)
T ss_dssp HHCTTCCCHHHHHHHHHHHHHHHHHHTTTST----THHHHHHHHHHHHHTCTTS
T ss_pred HHhcccCHHHHHHHHHHHHHHHHHHhCccCc----hHHHHHHHHHHHHHcCCCC
Confidence 64332 11 23347778888888886543 3444455555555455543
No 102
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=31.32 E-value=1.5e+02 Score=29.00 Aligned_cols=65 Identities=20% Similarity=0.091 Sum_probs=47.1
Q ss_pred hhcccCCCCCcccHHHHHHHHHHhhhcCC--hhhH--HHHHHHHHHhhcc-CCCCCCCCcchhHHHHHHHHHhhhcCC
Q 005697 256 LPLYSVSVCLPYLVASANWILGELASCLP--EDIS--ADVYSSLLKALQM-LDKGDTSCYPVRASAAGAIVGLLENDY 328 (682)
Q Consensus 256 lP~l~~~s~~p~LrarA~~~l~~f~~~l~--~~~l--~~il~~ll~~L~d-~~~~~~~~~pVrv~Aa~AL~~~l~~~~ 328 (682)
+..|. ++++-+|..|+|.+..++..-+ ...+ ...++.+++.|.. ++ ..+|-.|+.||.++..++.
T Consensus 58 V~lL~--s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~------~~~~e~a~~aL~nLS~~~~ 127 (233)
T 3tt9_A 58 LQLLK--VQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRD------LETKKQITGLLWNLSSNDK 127 (233)
T ss_dssp HHGGG--CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCC------HHHHHHHHHHHHHHHTSGG
T ss_pred HHHHc--CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCC------HHHHHHHHHHHHHHHcChh
Confidence 34466 7889999999999999976321 1222 1257778888874 45 7899999999999876543
No 103
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=27.57 E-value=1.9e+02 Score=27.66 Aligned_cols=76 Identities=9% Similarity=-0.035 Sum_probs=56.1
Q ss_pred ccHHHHHHHHHHhhhcC---ChhhHHHHHHHHHHhhccCCCCCCCCcchhHHHHHHHHHhhhcCCCCCChHHHHHHHHHh
Q 005697 267 YLVASANWILGELASCL---PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGR 343 (682)
Q Consensus 267 ~LrarA~~~l~~f~~~l---~~~~l~~il~~ll~~L~d~~~~~~~~~pVrv~Aa~AL~~~l~~~~l~p~l~~llq~Ll~~ 343 (682)
-||--|..+++.....+ .+..-.++...+.+.+.|+++ +++.+..|..+|..+=. +.++-.+.|-+..+.+.
T Consensus 105 ~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~----~l~t~YGAi~GL~~lG~-~~vr~~llP~l~~~~~~ 179 (196)
T 4atg_A 105 DVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNR----SEDSQYGALYCLSILSK-NVVNTVIREHAEEYKRT 179 (196)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTS----CHHHHHHHHHHHHHHCH-HHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCC----ChHHHHHHHHHHHHhHH-HHHHHhhhcCHHHHHHH
Confidence 79999999999988753 367788999999999999884 58999999988887644 34444444555555554
Q ss_pred hccc
Q 005697 344 IGYE 347 (682)
Q Consensus 344 L~~e 347 (682)
+.+.
T Consensus 180 ~~~~ 183 (196)
T 4atg_A 180 IGKK 183 (196)
T ss_dssp TCCH
T ss_pred HHHH
Confidence 4433
No 104
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=20.09 E-value=74 Score=33.00 Aligned_cols=103 Identities=16% Similarity=0.267 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHhhh---hHhhhHHHHHHHHHHHHHhccccccCcccCHHHHHHHHHHHHHHhccCcccccccccH
Q 005697 22 KTGKRGLLIFSALVTRHRK---FSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLVSPHF 98 (682)
Q Consensus 22 K~kKw~~~~l~~l~~Ry~~---~~~~f~p~il~~~l~~l~~~~~~~~~~~lsd~~i~~~~~fl~~~v~~~~~~~ll~p~l 98 (682)
.+||.+++.+..++.|-.. -.++++|.+++.++.==... ........+ +.+++++++. .-..+.|.+
T Consensus 44 ~vKkeiLkLiet~i~~~~d~~~v~~~~ippLl~~VL~DY~~~----vp~aRepeV----L~l~~tii~k--l~~~i~~~v 113 (321)
T 1w9c_A 44 TVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRN----VPAAREPEV----LSTMAIIVNK--LGGHITAEI 113 (321)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHHHHHHHHTS----CGGGCCTHH----HHHHHHHHHH--HGGGGGGGH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhC----CcccccHHH----HHHHHHHHHH--HHHHhhhhH
Confidence 4688888888888876433 25688888887776533321 111122233 4555555543 335788999
Q ss_pred HHHHHHHhhccccCChhhhhhhhhCHHHHHHhcCCCchhhhccccccccchhHHHHHHHHHH
Q 005697 99 SVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVI 160 (682)
Q Consensus 99 ~~Li~~vIfP~l~~teeD~Elwe~DP~EYIr~~~d~~~~~~~~~~ed~~S~R~aA~~lL~~L 160 (682)
+.|++.+--|.+.| |.+++ +++---|..=-.||+++
T Consensus 114 p~Il~~VFe~TL~M---------------I~~df-----------~eyPehR~~Ff~LL~ai 149 (321)
T 1w9c_A 114 PQIFDAVFECTLNM---------------INKDF-----------EEYPEHRTNFFLLLQAV 149 (321)
T ss_dssp HHHHHHHHHHHHHH---------------HSSTT-----------TCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------------Hhccc-----------ccChHHHHHHHHHHHHH
Confidence 99998875443332 33322 23334577777888886
Done!