Your job contains 1 sequence.
>005698
MTALAATTTMGTLSQVPMAPSAAAMAAAQAIVAAQALQAHAAQVQAQQSAKDLSGSPDKA
GKADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL
ALNNMDVGGRPLNVEMAKSFPQKPSHLNSSLAGSSLPMMMQQAVAMQQMQFQQALLMQQT
LTAQQAANRAASMKSATELAAARAAEISKKLKADGLVDEDKETKQKSRSPSTSRARSRSK
SRSPVHYQRTYRARSRSKSRSPVSFHRRRRSRSFSPPYRHRRGHRSRSPLRSRHYSKYDN
ERLSTRDTRDGADRSRRESDISHHSPVPRRRKSRSVSPHSRKSYRSDSGSPKHRQESSAR
KSSRAHSKSPKRHRGNRNSPRNDDAKPKYRHRSRSKSMERHDEEKDEARDGKSQHRERKR
SRSLSREDEHHGRGRSPAGNVDENKSKLRGRSRSVSALDKYKSSEIADDSRDDRLRNRHK
RRSRSKSVEGKMGGGSRDKKPKHHDRRRSRSISADGKHHRGSRSPRGLDESRTKLGRRSR
SKSIERKLYRNRGRSRSADGRRRKSMLSPANLDRSESNRRRHSASQSKDHANSESAETRD
YKSMHHPHNWDKTEGELNASLKDPTVMEDDGFLSSKQKNYDLKKSMENVSAHENHGIKST
DPLMLNSDDVNLVSQSNAFPSM
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 005698
(682 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2076121 - symbol:AT3G23900 species:3702 "Arabi... 508 9.7e-48 1
RGD|621696 - symbol:Srek1 "splicing regulatory glutamine/... 112 1.3e-09 4
UNIPROTKB|Q9JKL7 - symbol:Srek1 "Splicing regulatory glut... 112 1.3e-09 4
UNIPROTKB|Q8WXA9 - symbol:SREK1 "Splicing regulatory glut... 112 6.0e-09 4
MGI|MGI:2145245 - symbol:Srek1 "splicing regulatory gluta... 112 9.8e-08 4
UNIPROTKB|E2R749 - symbol:SREK1 "Uncharacterized protein"... 112 1.1e-07 3
UNIPROTKB|J9P0H2 - symbol:SREK1 "Uncharacterized protein"... 112 2.3e-07 3
TAIR|locus:2024842 - symbol:CID8 "CTC-interacting domain ... 143 4.8e-07 1
TAIR|locus:2091657 - symbol:CID9 "CTC-interacting domain ... 141 8.9e-07 1
TAIR|locus:2184022 - symbol:CID13 "CTC-interacting domain... 136 3.1e-06 1
TAIR|locus:2082961 - symbol:CID10 "CTC-interacting domain... 126 5.0e-05 1
UNIPROTKB|F1MAM3 - symbol:Sfrs11 "Protein Sfrs11" species... 80 6.5e-05 3
TAIR|locus:2035629 - symbol:CID11 "CTC-interacting domain... 126 6.5e-05 1
DICTYBASE|DDB_G0291966 - symbol:DDB_G0291966 "CCHC-type z... 79 7.6e-05 3
ZFIN|ZDB-GENE-030131-3019 - symbol:rbm4.2 "RNA binding mo... 125 7.6e-05 1
ZFIN|ZDB-GENE-030131-3902 - symbol:rbm4.1 "RNA binding mo... 125 8.8e-05 1
TAIR|locus:2171780 - symbol:AT5G65260 species:3702 "Arabi... 119 9.2e-05 1
TAIR|locus:2077137 - symbol:AT3G46020 species:3702 "Arabi... 102 0.00011 1
DICTYBASE|DDB_G0292698 - symbol:DDB_G0292698 "RNA-binding... 110 0.00013 2
TAIR|locus:2119505 - symbol:AT4G13860 species:3702 "Arabi... 101 0.00014 1
DICTYBASE|DDB_G0292710 - symbol:DDB_G0292710 "peptidylpro... 112 0.00017 2
ZFIN|ZDB-GENE-040426-2706 - symbol:srsf2a "serine/arginin... 84 0.00021 2
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 124 0.00022 1
ZFIN|ZDB-GENE-040426-2455 - symbol:rbm14b "RNA binding mo... 122 0.00029 1
UNIPROTKB|E9PLB0 - symbol:RBM4B "RNA-binding protein 4B" ... 102 0.00043 1
UNIPROTKB|Q47X92 - symbol:CPS_3920 "RNA-binding protein" ... 96 0.00048 1
TIGR_CMR|CPS_3920 - symbol:CPS_3920 "RNA-binding protein"... 96 0.00048 1
UNIPROTKB|H0YEU6 - symbol:PABPC4 "Polyadenylate-binding p... 114 0.00051 1
ZFIN|ZDB-GENE-040801-132 - symbol:srek1 "splicing regulat... 111 0.00052 2
UNIPROTKB|Q3MHR5 - symbol:SRSF2 "Serine/arginine-rich spl... 79 0.00074 2
UNIPROTKB|Q01130 - symbol:SRSF2 "Serine/arginine-rich spl... 79 0.00074 2
UNIPROTKB|Q06A98 - symbol:SRSF2 "Serine/arginine-rich spl... 79 0.00074 2
MGI|MGI:98284 - symbol:Srsf2 "serine/arginine-rich splici... 79 0.00074 2
RGD|1359422 - symbol:Srsf2 "serine/arginine-rich splicing... 79 0.00074 2
UNIPROTKB|Q6PDU1 - symbol:Srsf2 "Serine/arginine-rich spl... 79 0.00074 2
RGD|1559953 - symbol:Srsf11 "serine/arginine-rich splicin... 80 0.00076 3
ZFIN|ZDB-GENE-030131-2420 - symbol:srsf2b "serine/arginin... 77 0.00098 2
>TAIR|locus:2076121 [details] [associations]
symbol:AT3G23900 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0000226 "microtubule cytoskeleton
organization" evidence=RCA] [GO:0000911 "cytokinesis by cell plate
formation" evidence=RCA] [GO:0007155 "cell adhesion" evidence=RCA]
[GO:0009887 "organ morphogenesis" evidence=RCA] [GO:0009888 "tissue
development" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0010638 "positive
regulation of organelle organization" evidence=RCA] [GO:0016926
"protein desumoylation" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0050665 "hydrogen peroxide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR001298 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00360
SMART:SM00557 EMBL:CP002686 Gene3D:2.60.40.10 InterPro:IPR013783
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 InterPro:IPR014756 SUPFAM:SSF81296 InterPro:IPR017868
Pfam:PF00630 PROSITE:PS50194 IPI:IPI00521323 RefSeq:NP_001189958.1
RefSeq:NP_189032.2 UniGene:At.37625 UniGene:At.73245
ProteinModelPortal:F4J5A7 SMR:F4J5A7 PRIDE:F4J5A7
EnsemblPlants:AT3G23900.1 EnsemblPlants:AT3G23900.3 GeneID:821973
KEGG:ath:AT3G23900 OMA:HIAYVEY Uniprot:F4J5A7
Length = 987
Score = 508 (183.9 bits), Expect = 9.7e-48, P = 9.7e-48
Identities = 183/595 (30%), Positives = 237/595 (39%)
Query: 55 GSPDKAGKADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPE 114
GSP+K D LKK LQVSNLSP LT EQLRQLFSFCGTVV+C+ITDSKH AYIEYS E
Sbjct: 339 GSPEKGENGD-LKKFLQVSNLSPSLTTEQLRQLFSFCGTVVDCSITDSKHIAYIEYSNSE 397
Query: 115 EATAALALNNMDVGGRPLNVEMAKSFPQKPSHLNSSLAGSSLPXXXXXXXXXXXXXXXXX 174
EATAALALNN +V GR LNVE+AKS P KPS NSS SSLP
Sbjct: 398 EATAALALNNTEVFGRALNVEIAKSLPHKPSSNNSS---SSLPLMMQQAVAMQQMQFQQA 454
Query: 175 XXXXXXXXXXXXXNRAASMKSATELXXXXXXEISKKLKADGLVDEDKETKQKXXXXXXXX 234
NRAA+MKSATEL EIS+KL+ DG+ +++KE QK
Sbjct: 455 ILMQQAVATQQAANRAATMKSATELAAARAAEISRKLRPDGVGNDEKEADQKSRSPSKSP 514
Query: 235 XXXXXXXXXPVHYQRTYRARSRS---KXXXXXXXXXXXXXXXXXXXXXXXXGHR-SRSPL 290
P+ Y+R R+ + S + +R SR
Sbjct: 515 ARSRSKSKSPISYRRRRRSPTYSPPFRRPRSHRSRSPLRYQRRSTYEGRRRSYRDSRDIS 574
Query: 291 RSRHYSKYDNERLST-RDTRDGADRSRRESDIXXXXXXXXXXXXXXXXXXXXXXYRSDSG 349
SR Y + D S+ R +R + + R+ R+ S
Sbjct: 575 ESRRYGRSDEHHSSSSRRSRSVSPKKRKSGQEDSELSRLRRDSSSRGEKKSS---RAGSR 631
Query: 350 SPKHRQEXXXXXXXXXXXXXXXXXXGNRNSPRND-DAKPKYR------HRSRSKSMERHD 402
SP+ R+E S + D K K R H+ RS+S R D
Sbjct: 632 SPRRRKEVKSTPRDDEENKVKRRTRSRSRSVEDSADIKDKSRDEELKHHKKRSRSRSRED 691
Query: 403 EEK--DEAR---DGKSQHXXXXXXXXXXXXXXHHGRGRSPAGNVDENKSKLRGRSRSVSA 457
K D +R + K +H H A + D N + RS+S+
Sbjct: 692 RSKTRDTSRNSDEAKQKHRQRSRSRSLENDNGSH-ENVDVAQDNDLNSRHSKRRSKSLD- 749
Query: 458 LDKYKSSEIADDXXXXXXXXXXXXXXXXXXVEGKMGGGXXXXXXXXXXXXXXXXISADGK 517
+ Y E E + G S +GK
Sbjct: 750 -EDYDMKERRGRSRSRSLETKNRSSRKNKLDEDRNTGSRRRRSRSK---------SVEGK 799
Query: 518 HHRGSRSPRGLDE-SRTKLGRRSRSKSIERKLYXXXXXXXXXXXXXXKSMLSPANLDRSE 576
++ R D+ S+ + GRRSRS S E K +S SP D +
Sbjct: 800 RSY-NKETRSRDKKSKRRSGRRSRSPSSEGK-----------QGRDIRS--SPGYSDEKK 845
Query: 577 SNRRRHSASQSKDHANS--ESAETRDYKSMHHPHNWDKTEGELNASLKDPTVMED 629
S +RHS S+S + NS + R + DK G+ + S P ED
Sbjct: 846 SRHKRHSRSRSIEKKNSSRDKRSKRHERLRSSSPGRDKRRGDRSLS---PVSSED 897
>RGD|621696 [details] [associations]
symbol:Srek1 "splicing regulatory glutamine/lysine-rich protein
1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 RGD:621696 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676 KO:K13165 CTD:140890
HOVERGEN:HBG079174 OrthoDB:EOG4K3KWS EMBL:AF234765 IPI:IPI00202759
RefSeq:NP_064477.1 UniGene:Rn.161755 ProteinModelPortal:Q9JKL7
STRING:Q9JKL7 PRIDE:Q9JKL7 GeneID:56763 KEGG:rno:56763
UCSC:RGD:621696 eggNOG:NOG310672 InParanoid:Q9JKL7 NextBio:611146
Genevestigator:Q9JKL7 GermOnline:ENSRNOG00000032735 Uniprot:Q9JKL7
Length = 494
Score = 112 (44.5 bits), Expect = 1.3e-09, Sum P(4) = 1.3e-09
Identities = 32/109 (29%), Positives = 50/109 (45%)
Query: 53 LSGSPDKAGKADALKKTLQVSNL-SPLLTVEQLRQLFSFCGTVVECTI----TDSKHFAY 107
L G+ D + K D +++T+ V NL S T +QL + F G V + T FA+
Sbjct: 55 LMGNVDPS-KIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAF 113
Query: 108 IEYSKPEEATAALALNNMDVGGRPLNVEMAKSFPQKPSHLNSSLAGSSL 156
+E++ ALA N + G RPL + + + KP + A L
Sbjct: 114 VEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAAKEL 162
Score = 66 (28.3 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 31/129 (24%), Positives = 46/129 (35%)
Query: 517 KHHRGSRSPRGLDESRTKLGRRSRSKSIERKLYXXXXXXXXXXXXXXKSMLSPANLDRSE 576
+ H SRS R D +R+K + RSKS ER+ + + +R
Sbjct: 223 RSHNRSRS-RQKDRARSKSPHKKRSKSRERRKSRSRSRSRDKRKDTREKVKERVK-ERER 280
Query: 577 SNRRRHSASQSKDHANSESAETRDYKSMHHPHNWDKTEGELNASLKDPTVMEDDGFLSSK 636
+ + KD ++ + K H DK E E KD E D +
Sbjct: 281 EKEKEREKEREKDKERGKNKDKDREKEKDHEKERDK-EKEKEQD-KDKE-REKDRSKEAD 337
Query: 637 QKNYDLKKS 645
+K KKS
Sbjct: 338 EKRKKEKKS 346
Score = 65 (27.9 bits), Expect = 1.3e-09, Sum P(4) = 1.3e-09
Identities = 35/158 (22%), Positives = 57/158 (36%)
Query: 517 KHHRGSRSP-RGLDESRTKLGRRSRSKSIERKLYXXXXXXXXXXXXXX---KSMLSPANL 572
K + SR+P R + SR RSRS S ER+ KS SP+
Sbjct: 341 KKEKKSRTPPRSYNSSR-----RSRSASRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPR 395
Query: 573 DRSESNRRRHSASQSKDHANSESAETRDYKSMHHPHNWDKTEGELNASLKDPT-VMEDDG 631
R++ ++R T KS +K E + N +K+ E D
Sbjct: 396 GRNKKEKKREKERDHISDRRERERSTSTKKSSSDRDGKEKVE-KTNTPVKEKEHSKEADS 454
Query: 632 FLSSKQKNYDLKKSMENVSAHENHGIKSTDPLMLNSDD 669
+S+ D ++ E A N + + + ++ D
Sbjct: 455 TVSTDADEKDTARTEEESKAQHNGNCQPHEERLCSTAD 492
Score = 63 (27.2 bits), Expect = 1.3e-09, Sum P(4) = 1.3e-09
Identities = 23/91 (25%), Positives = 38/91 (41%)
Query: 376 NRNSPRNDDAKPKYRHRSRSKSMERHDE-EKDEARDGKSQHXXXXXXXXXXXXXXHHGRG 434
++ + K + + R R K ER E EKD+ R GK++ H +
Sbjct: 262 DKRKDTREKVKERVKEREREKEKEREKEREKDKER-GKNKDKDREKEKD-------HEKE 313
Query: 435 RSPAGNVDENKSKLRGRSRSVSALDKYKSSE 465
R +++K K R + RS A +K K +
Sbjct: 314 RDKEKEKEQDKDKEREKDRSKEADEKRKKEK 344
Score = 56 (24.8 bits), Expect = 2.9e-07, Sum P(3) = 2.9e-07
Identities = 22/76 (28%), Positives = 33/76 (43%)
Query: 390 RHRSRSKSMERHDEEKDEARDGKSQHXXXXXXXXXXXXXXHHGRGRSPAGNVDENKSKLR 449
R RS ++S R K +R +SQ R RS + + +KS+ R
Sbjct: 194 RSRSHTRSKSR-SSSKSHSRRKRSQ-SKHRSRSHNRSRSRQKDRARSKSPHKKRSKSRER 251
Query: 450 GRSRSVS-ALDKYKSS 464
+SRS S + DK K +
Sbjct: 252 RKSRSRSRSRDKRKDT 267
Score = 55 (24.4 bits), Expect = 3.7e-07, Sum P(3) = 3.7e-07
Identities = 24/120 (20%), Positives = 40/120 (33%)
Query: 346 SDSGSPKHRQEXXXXXXXXXXXXXXXXXXGNRNSPRNDDAKPKYRHRSRSKSMERHDEEK 405
S S S + R + SP +K + R +SRS+S R D+ K
Sbjct: 207 SKSHSRRKRSQSKHRSRSHNRSRSRQKDRARSKSPHKKRSKSRERRKSRSRSRSR-DKRK 265
Query: 406 DEARDGKSQHXXXXXXXXXXXXXXHHGRGRSPAGNVDENKSKLRGRSRSVSALDKYKSSE 465
D R+ + + + N D+++ K + + DK K E
Sbjct: 266 D-TREKVKERVKEREREKEKEREKEREKDKERGKNKDKDREKEKDHEKE---RDKEKEKE 321
Score = 55 (24.4 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 574 RSESNRRRHSASQSKDHANSESAETRDYKSMHHPHNWDKTEGELNASLKDP 624
RS S+ R S S SK H+ + ++++ ++S HN ++ + A K P
Sbjct: 194 RSRSHTRSKSRSSSKSHSRRKRSQSK-HRS--RSHNRSRSRQKDRARSKSP 241
Score = 54 (24.1 bits), Expect = 9.1e-06, Sum P(3) = 9.1e-06
Identities = 19/78 (24%), Positives = 30/78 (38%)
Query: 345 RSDSGSPKHRQEXXXXXXXXXXXXXXXXXXGNRN-SPRNDDAKPKYRHRSRSKSMERHDE 403
RS S S + R+ +R+ SPR + K K R + R +R +
Sbjct: 358 RSRSASRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPRGRNKKEKKREKERDHISDRRER 417
Query: 404 EKDEA-------RDGKSQ 414
E+ + RDGK +
Sbjct: 418 ERSTSTKKSSSDRDGKEK 435
Score = 53 (23.7 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 20/91 (21%), Positives = 34/91 (37%)
Query: 376 NRNSPRNDDAK-PKYRHRSRSKSMERHDE-EKDEARDGKSQHXXXXXXXXXXXXXXHHGR 433
N++ R + K R + + K ++ E EKD +++ + R
Sbjct: 299 NKDKDREKEKDHEKERDKEKEKEQDKDKEREKDRSKEADEKRKKEKKSRTPPRSYNSSRR 358
Query: 434 GRSPAGNVDENKSKLRGRSRSVSALDKYKSS 464
RS + +S+ RS S K KSS
Sbjct: 359 SRSASRERRRRRSRSSSRSPRTSKTIKRKSS 389
Score = 52 (23.4 bits), Expect = 1.3e-09, Sum P(4) = 1.3e-09
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 284 HRSRSPLRSRHYSKYDNERLSTRDTRDGADRSRRES 319
HRSRS RSR K D R + + R RR+S
Sbjct: 220 HRSRSHNRSRSRQK-DRARSKSPHKKRSKSRERRKS 254
Score = 52 (23.4 bits), Expect = 1.6e-08, Sum P(4) = 1.6e-08
Identities = 17/69 (24%), Positives = 28/69 (40%)
Query: 386 KPKYRHRSRSKSMERHDEEKDEARDGKSQHXXXXXXXXXXXXXXHHGRGRSPAGNVDENK 445
K K R + R K ER + KD+ R+ + H R + + DE +
Sbjct: 282 KEKEREKEREKDKER-GKNKDKDREKEKDHEKERDKEKEKEQDKDKEREKDRSKEADEKR 340
Query: 446 SKLRGRSRS 454
K + +SR+
Sbjct: 341 KKEK-KSRT 348
Score = 49 (22.3 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 16/79 (20%), Positives = 29/79 (36%)
Query: 375 GNRNSPRNDDAKPKYRHRSRSKSMERHDEEKDEARDGKSQHXXXXXXXXXXXXXXHHGRG 434
G N + ++ R +SRS S ++ +++ H +
Sbjct: 185 GKSNERKGGRSRSHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRARSKSPHKK 244
Query: 435 RSPAGNVDENKSKLRGRSR 453
RS + + KS+ R RSR
Sbjct: 245 RSKSR--ERRKSRSRSRSR 261
Score = 48 (22.0 bits), Expect = 0.00092, Sum P(2) = 0.00092
Identities = 20/64 (31%), Positives = 26/64 (40%)
Query: 542 KSIERKLYXXXXXXXXXXXXXXKSMLSPANLDRSESNRRRHSASQS--KDHANSESAETR 599
KS ERK KS S +S+ R H+ S+S KD A S+S +
Sbjct: 186 KSNERKGGRSRSHTRSKSRSSSKSH-SRRKRSQSKHRSRSHNRSRSRQKDRARSKSPHKK 244
Query: 600 DYKS 603
KS
Sbjct: 245 RSKS 248
Score = 46 (21.3 bits), Expect = 2.9e-06, Sum P(3) = 2.9e-06
Identities = 14/71 (19%), Positives = 28/71 (39%)
Query: 395 SKSMERHDEEKDEARDGKSQHXXXXXXXXXXXXXXHHGRGRSPAGNVDENKSKLRGRSRS 454
S ++E + +E + G+S+ R +S + N+S+ R + R+
Sbjct: 177 SAAIEPESGKSNERKGGRSRSHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRA 236
Query: 455 VSALDKYKSSE 465
S K S+
Sbjct: 237 RSKSPHKKRSK 247
Score = 45 (20.9 bits), Expect = 3.7e-06, Sum P(3) = 3.7e-06
Identities = 12/66 (18%), Positives = 21/66 (31%)
Query: 345 RSDSGSPKHRQEXXXXXXXXXXXXXXXXXXGNRNSPRNDDAKPKYRHRSRSKSMERHDEE 404
R KHR + S + K + R RSR K + ++
Sbjct: 212 RRKRSQSKHRSRSHNRSRSRQKDRARSKSPHKKRSKSRERRKSRSRSRSRDKRKDTREKV 271
Query: 405 KDEARD 410
K+ ++
Sbjct: 272 KERVKE 277
Score = 40 (19.1 bits), Expect = 0.00022, Sum P(3) = 0.00022
Identities = 12/78 (15%), Positives = 27/78 (34%)
Query: 376 NRNSPRNDDAKPKYRHRSRSKSMERHDEEKDEARDGKSQHXXXXXXXXXXXXXXHHGRGR 435
+R+ ++ K + + R+ +S + +R+ + + R
Sbjct: 331 DRSKEADEKRKKEKKSRTPPRSYNSSRRSRSASRERRRRRSRSSSRSPRTSKTIKRKSSR 390
Query: 436 SPAGNVDENKSKLRGRSR 453
SP+ K K R + R
Sbjct: 391 SPSPRGRNKKEKKREKER 408
>UNIPROTKB|Q9JKL7 [details] [associations]
symbol:Srek1 "Splicing regulatory glutamine/lysine-rich
protein 1" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 RGD:621696 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003676 KO:K13165 CTD:140890 HOVERGEN:HBG079174
OrthoDB:EOG4K3KWS EMBL:AF234765 IPI:IPI00202759 RefSeq:NP_064477.1
UniGene:Rn.161755 ProteinModelPortal:Q9JKL7 STRING:Q9JKL7
PRIDE:Q9JKL7 GeneID:56763 KEGG:rno:56763 UCSC:RGD:621696
eggNOG:NOG310672 InParanoid:Q9JKL7 NextBio:611146
Genevestigator:Q9JKL7 GermOnline:ENSRNOG00000032735 Uniprot:Q9JKL7
Length = 494
Score = 112 (44.5 bits), Expect = 1.3e-09, Sum P(4) = 1.3e-09
Identities = 32/109 (29%), Positives = 50/109 (45%)
Query: 53 LSGSPDKAGKADALKKTLQVSNL-SPLLTVEQLRQLFSFCGTVVECTI----TDSKHFAY 107
L G+ D + K D +++T+ V NL S T +QL + F G V + T FA+
Sbjct: 55 LMGNVDPS-KIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAF 113
Query: 108 IEYSKPEEATAALALNNMDVGGRPLNVEMAKSFPQKPSHLNSSLAGSSL 156
+E++ ALA N + G RPL + + + KP + A L
Sbjct: 114 VEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAAKEL 162
Score = 66 (28.3 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 31/129 (24%), Positives = 46/129 (35%)
Query: 517 KHHRGSRSPRGLDESRTKLGRRSRSKSIERKLYXXXXXXXXXXXXXXKSMLSPANLDRSE 576
+ H SRS R D +R+K + RSKS ER+ + + +R
Sbjct: 223 RSHNRSRS-RQKDRARSKSPHKKRSKSRERRKSRSRSRSRDKRKDTREKVKERVK-ERER 280
Query: 577 SNRRRHSASQSKDHANSESAETRDYKSMHHPHNWDKTEGELNASLKDPTVMEDDGFLSSK 636
+ + KD ++ + K H DK E E KD E D +
Sbjct: 281 EKEKEREKEREKDKERGKNKDKDREKEKDHEKERDK-EKEKEQD-KDKE-REKDRSKEAD 337
Query: 637 QKNYDLKKS 645
+K KKS
Sbjct: 338 EKRKKEKKS 346
Score = 65 (27.9 bits), Expect = 1.3e-09, Sum P(4) = 1.3e-09
Identities = 35/158 (22%), Positives = 57/158 (36%)
Query: 517 KHHRGSRSP-RGLDESRTKLGRRSRSKSIERKLYXXXXXXXXXXXXXX---KSMLSPANL 572
K + SR+P R + SR RSRS S ER+ KS SP+
Sbjct: 341 KKEKKSRTPPRSYNSSR-----RSRSASRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPR 395
Query: 573 DRSESNRRRHSASQSKDHANSESAETRDYKSMHHPHNWDKTEGELNASLKDPT-VMEDDG 631
R++ ++R T KS +K E + N +K+ E D
Sbjct: 396 GRNKKEKKREKERDHISDRRERERSTSTKKSSSDRDGKEKVE-KTNTPVKEKEHSKEADS 454
Query: 632 FLSSKQKNYDLKKSMENVSAHENHGIKSTDPLMLNSDD 669
+S+ D ++ E A N + + + ++ D
Sbjct: 455 TVSTDADEKDTARTEEESKAQHNGNCQPHEERLCSTAD 492
Score = 63 (27.2 bits), Expect = 1.3e-09, Sum P(4) = 1.3e-09
Identities = 23/91 (25%), Positives = 38/91 (41%)
Query: 376 NRNSPRNDDAKPKYRHRSRSKSMERHDE-EKDEARDGKSQHXXXXXXXXXXXXXXHHGRG 434
++ + K + + R R K ER E EKD+ R GK++ H +
Sbjct: 262 DKRKDTREKVKERVKEREREKEKEREKEREKDKER-GKNKDKDREKEKD-------HEKE 313
Query: 435 RSPAGNVDENKSKLRGRSRSVSALDKYKSSE 465
R +++K K R + RS A +K K +
Sbjct: 314 RDKEKEKEQDKDKEREKDRSKEADEKRKKEK 344
Score = 56 (24.8 bits), Expect = 2.9e-07, Sum P(3) = 2.9e-07
Identities = 22/76 (28%), Positives = 33/76 (43%)
Query: 390 RHRSRSKSMERHDEEKDEARDGKSQHXXXXXXXXXXXXXXHHGRGRSPAGNVDENKSKLR 449
R RS ++S R K +R +SQ R RS + + +KS+ R
Sbjct: 194 RSRSHTRSKSR-SSSKSHSRRKRSQ-SKHRSRSHNRSRSRQKDRARSKSPHKKRSKSRER 251
Query: 450 GRSRSVS-ALDKYKSS 464
+SRS S + DK K +
Sbjct: 252 RKSRSRSRSRDKRKDT 267
Score = 55 (24.4 bits), Expect = 3.7e-07, Sum P(3) = 3.7e-07
Identities = 24/120 (20%), Positives = 40/120 (33%)
Query: 346 SDSGSPKHRQEXXXXXXXXXXXXXXXXXXGNRNSPRNDDAKPKYRHRSRSKSMERHDEEK 405
S S S + R + SP +K + R +SRS+S R D+ K
Sbjct: 207 SKSHSRRKRSQSKHRSRSHNRSRSRQKDRARSKSPHKKRSKSRERRKSRSRSRSR-DKRK 265
Query: 406 DEARDGKSQHXXXXXXXXXXXXXXHHGRGRSPAGNVDENKSKLRGRSRSVSALDKYKSSE 465
D R+ + + + N D+++ K + + DK K E
Sbjct: 266 D-TREKVKERVKEREREKEKEREKEREKDKERGKNKDKDREKEKDHEKE---RDKEKEKE 321
Score = 55 (24.4 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 574 RSESNRRRHSASQSKDHANSESAETRDYKSMHHPHNWDKTEGELNASLKDP 624
RS S+ R S S SK H+ + ++++ ++S HN ++ + A K P
Sbjct: 194 RSRSHTRSKSRSSSKSHSRRKRSQSK-HRS--RSHNRSRSRQKDRARSKSP 241
Score = 54 (24.1 bits), Expect = 9.1e-06, Sum P(3) = 9.1e-06
Identities = 19/78 (24%), Positives = 30/78 (38%)
Query: 345 RSDSGSPKHRQEXXXXXXXXXXXXXXXXXXGNRN-SPRNDDAKPKYRHRSRSKSMERHDE 403
RS S S + R+ +R+ SPR + K K R + R +R +
Sbjct: 358 RSRSASRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPRGRNKKEKKREKERDHISDRRER 417
Query: 404 EKDEA-------RDGKSQ 414
E+ + RDGK +
Sbjct: 418 ERSTSTKKSSSDRDGKEK 435
Score = 53 (23.7 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 20/91 (21%), Positives = 34/91 (37%)
Query: 376 NRNSPRNDDAK-PKYRHRSRSKSMERHDE-EKDEARDGKSQHXXXXXXXXXXXXXXHHGR 433
N++ R + K R + + K ++ E EKD +++ + R
Sbjct: 299 NKDKDREKEKDHEKERDKEKEKEQDKDKEREKDRSKEADEKRKKEKKSRTPPRSYNSSRR 358
Query: 434 GRSPAGNVDENKSKLRGRSRSVSALDKYKSS 464
RS + +S+ RS S K KSS
Sbjct: 359 SRSASRERRRRRSRSSSRSPRTSKTIKRKSS 389
Score = 52 (23.4 bits), Expect = 1.3e-09, Sum P(4) = 1.3e-09
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 284 HRSRSPLRSRHYSKYDNERLSTRDTRDGADRSRRES 319
HRSRS RSR K D R + + R RR+S
Sbjct: 220 HRSRSHNRSRSRQK-DRARSKSPHKKRSKSRERRKS 254
Score = 52 (23.4 bits), Expect = 1.6e-08, Sum P(4) = 1.6e-08
Identities = 17/69 (24%), Positives = 28/69 (40%)
Query: 386 KPKYRHRSRSKSMERHDEEKDEARDGKSQHXXXXXXXXXXXXXXHHGRGRSPAGNVDENK 445
K K R + R K ER + KD+ R+ + H R + + DE +
Sbjct: 282 KEKEREKEREKDKER-GKNKDKDREKEKDHEKERDKEKEKEQDKDKEREKDRSKEADEKR 340
Query: 446 SKLRGRSRS 454
K + +SR+
Sbjct: 341 KKEK-KSRT 348
Score = 49 (22.3 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 16/79 (20%), Positives = 29/79 (36%)
Query: 375 GNRNSPRNDDAKPKYRHRSRSKSMERHDEEKDEARDGKSQHXXXXXXXXXXXXXXHHGRG 434
G N + ++ R +SRS S ++ +++ H +
Sbjct: 185 GKSNERKGGRSRSHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRARSKSPHKK 244
Query: 435 RSPAGNVDENKSKLRGRSR 453
RS + + KS+ R RSR
Sbjct: 245 RSKSR--ERRKSRSRSRSR 261
Score = 48 (22.0 bits), Expect = 0.00092, Sum P(2) = 0.00092
Identities = 20/64 (31%), Positives = 26/64 (40%)
Query: 542 KSIERKLYXXXXXXXXXXXXXXKSMLSPANLDRSESNRRRHSASQS--KDHANSESAETR 599
KS ERK KS S +S+ R H+ S+S KD A S+S +
Sbjct: 186 KSNERKGGRSRSHTRSKSRSSSKSH-SRRKRSQSKHRSRSHNRSRSRQKDRARSKSPHKK 244
Query: 600 DYKS 603
KS
Sbjct: 245 RSKS 248
Score = 46 (21.3 bits), Expect = 2.9e-06, Sum P(3) = 2.9e-06
Identities = 14/71 (19%), Positives = 28/71 (39%)
Query: 395 SKSMERHDEEKDEARDGKSQHXXXXXXXXXXXXXXHHGRGRSPAGNVDENKSKLRGRSRS 454
S ++E + +E + G+S+ R +S + N+S+ R + R+
Sbjct: 177 SAAIEPESGKSNERKGGRSRSHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRA 236
Query: 455 VSALDKYKSSE 465
S K S+
Sbjct: 237 RSKSPHKKRSK 247
Score = 45 (20.9 bits), Expect = 3.7e-06, Sum P(3) = 3.7e-06
Identities = 12/66 (18%), Positives = 21/66 (31%)
Query: 345 RSDSGSPKHRQEXXXXXXXXXXXXXXXXXXGNRNSPRNDDAKPKYRHRSRSKSMERHDEE 404
R KHR + S + K + R RSR K + ++
Sbjct: 212 RRKRSQSKHRSRSHNRSRSRQKDRARSKSPHKKRSKSRERRKSRSRSRSRDKRKDTREKV 271
Query: 405 KDEARD 410
K+ ++
Sbjct: 272 KERVKE 277
Score = 40 (19.1 bits), Expect = 0.00022, Sum P(3) = 0.00022
Identities = 12/78 (15%), Positives = 27/78 (34%)
Query: 376 NRNSPRNDDAKPKYRHRSRSKSMERHDEEKDEARDGKSQHXXXXXXXXXXXXXXHHGRGR 435
+R+ ++ K + + R+ +S + +R+ + + R
Sbjct: 331 DRSKEADEKRKKEKKSRTPPRSYNSSRRSRSASRERRRRRSRSSSRSPRTSKTIKRKSSR 390
Query: 436 SPAGNVDENKSKLRGRSR 453
SP+ K K R + R
Sbjct: 391 SPSPRGRNKKEKKREKER 408
>UNIPROTKB|Q8WXA9 [details] [associations]
symbol:SREK1 "Splicing regulatory glutamine/lysine-rich
protein 1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 eggNOG:NOG277302 KO:K13165
EMBL:AF459094 EMBL:BC047322 EMBL:BC067770 EMBL:BC112343
IPI:IPI00103497 IPI:IPI00375462 RefSeq:NP_001070667.1
RefSeq:NP_001257421.1 RefSeq:NP_631907.1 UniGene:Hs.49367
UniGene:Hs.519347 ProteinModelPortal:Q8WXA9 SMR:Q8WXA9
IntAct:Q8WXA9 STRING:Q8WXA9 PhosphoSite:Q8WXA9 DMDM:37537968
PaxDb:Q8WXA9 PeptideAtlas:Q8WXA9 PRIDE:Q8WXA9
Ensembl:ENST00000334121 Ensembl:ENST00000380918 GeneID:140890
KEGG:hsa:140890 UCSC:uc003jun.3 UCSC:uc003juo.3 CTD:140890
GeneCards:GC05P065435 HGNC:HGNC:17882 HPA:HPA037674 MIM:609268
neXtProt:NX_Q8WXA9 PharmGKB:PA38255 HOVERGEN:HBG079174
InParanoid:Q8WXA9 OMA:EKEQDKD OrthoDB:EOG4K3KWS ChiTaRS:SREK1
GenomeRNAi:140890 NextBio:84548 ArrayExpress:Q8WXA9 Bgee:Q8WXA9
CleanEx:HS_SFRS12 Genevestigator:Q8WXA9 GermOnline:ENSG00000153914
Uniprot:Q8WXA9
Length = 508
Score = 112 (44.5 bits), Expect = 6.0e-09, Sum P(4) = 6.0e-09
Identities = 32/109 (29%), Positives = 50/109 (45%)
Query: 53 LSGSPDKAGKADALKKTLQVSNL-SPLLTVEQLRQLFSFCGTVVECTI----TDSKHFAY 107
L G+ D + K D +++T+ V NL S T +QL + F G V + T FA+
Sbjct: 52 LMGNVDPS-KIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAF 110
Query: 108 IEYSKPEEATAALALNNMDVGGRPLNVEMAKSFPQKPSHLNSSLAGSSL 156
+E++ ALA N + G RPL + + + KP + A L
Sbjct: 111 VEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAAKEL 159
Score = 74 (31.1 bits), Expect = 6.0e-09, Sum P(4) = 6.0e-09
Identities = 42/147 (28%), Positives = 63/147 (42%)
Query: 517 KHHRGSRSP-RGLDESRTKLGRRSRSKSIERKLYXXXXXXXXXXXXXX---KSMLSPANL 572
K + SR+P R + SR RSRS S ER+ KS SP+
Sbjct: 356 KKDKKSRTPPRSYNASR-----RSRSSSRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPR 410
Query: 573 DRSESNRRRHSASQSKDHANSESAETRDYKSMHHPHN-WD-KTEGELNA-SLKDPTV-ME 628
R++ +++R + +DH SE E SM N D K + E N+ SLK+ E
Sbjct: 411 SRNKKDKKRE---KERDHI-SERRERERSTSMRKSSNDRDGKEKLEKNSTSLKEKEHNKE 466
Query: 629 DDGFLSSKQKNYDLKKSMENVSAHENH 655
D +S + + D ++ EN H +
Sbjct: 467 PDSSVSKEVDDKDAPRTEENKIQHNGN 493
Score = 67 (28.6 bits), Expect = 4.1e-07, Sum P(3) = 4.1e-07
Identities = 22/82 (26%), Positives = 37/82 (45%)
Query: 386 KPKYRHRSRSKSMERHDEEKDEARDGKSQHXXXXXXXXXXXXXXHHGRGRSPAGNVDENK 445
K K R + R K E+ D+EKD R+ + +H R + + +DE +
Sbjct: 297 KNKDRDKEREKDREK-DKEKDREREREKEHEKDRDKEKEKEQDKEKEREKDRSKEIDEKR 355
Query: 446 SK-LRGRS--RSVSALDKYKSS 464
K + R+ RS +A + +SS
Sbjct: 356 KKDKKSRTPPRSYNASRRSRSS 377
Score = 60 (26.2 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 28/118 (23%), Positives = 45/118 (38%)
Query: 530 ESRTKLGRRSRSKSIERKLYXXXXXXXXXXXXXXKSMLSPANLDRSESNRRRHSASQSKD 589
+S + G RSRS + K K N RS RR S S K
Sbjct: 183 KSNERKGGRSRSHT-RSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKSPHKK 241
Query: 590 HANSESAETRDYKSMHHPHNWDKTEGELNASLKDPTVMEDDGFLSSKQKNYDLKKSME 647
S+S E R KS H+ DK + + +K+ +++ +++ + +K E
Sbjct: 242 R--SKSRERR--KSRSRSHSRDKRK-DTREKIKEKERVKEKDREKEREREKEREKEKE 294
Score = 58 (25.5 bits), Expect = 3.3e-06, Sum P(3) = 3.3e-06
Identities = 20/78 (25%), Positives = 31/78 (39%)
Query: 345 RSDSGSPKHRQEXXXXXXXXXXXXXXXXXXGNRN-SPRNDDAKPKYRHRSRSKSMERHDE 403
RS S S + R+ +R+ SPR+ + K K R + R ER +
Sbjct: 373 RSRSSSRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPRSRNKKDKKREKERDHISERRER 432
Query: 404 EKDEA-------RDGKSQ 414
E+ + RDGK +
Sbjct: 433 ERSTSMRKSSNDRDGKEK 450
Score = 54 (24.1 bits), Expect = 6.6e-08, Sum P(3) = 6.6e-08
Identities = 22/76 (28%), Positives = 33/76 (43%)
Query: 390 RHRSRSKSMERHDEEKDEARDGKSQHXXXXXXXXXXXXXXHHGRGRSPAGNVDENKSKLR 449
R RS ++S R K +R +SQ R RS + + +KS+ R
Sbjct: 191 RSRSHTRSKSR-SSSKSHSRRKRSQ-SKHRSRSHNRSRSRQKDRRRSKSPHKKRSKSRER 248
Query: 450 GRSRSVS-ALDKYKSS 464
+SRS S + DK K +
Sbjct: 249 RKSRSRSHSRDKRKDT 264
Score = 54 (24.1 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 29/151 (19%), Positives = 49/151 (32%)
Query: 514 ADGKHHRGSRSPRGLDESRTKLGRRSRSKSIERKLYXXXXXXXXXXXXXXKSMLSPANLD 573
+ K H SR R + R++ RSRS+ +R+ KS + D
Sbjct: 202 SSSKSH--SRRKRSQSKHRSRSHNRSRSRQKDRRRSKSPHKKRSKSRERRKSRSRSHSRD 259
Query: 574 RSESNRRRHSASQ---SKDHANSESAETRDYKSMHHPHNWDKTEGELNASLKDPTVMEDD 630
+ + R + + KD E K N D+ + KD +
Sbjct: 260 KRKDTREKIKEKERVKEKDREKEREREKEREKEKERGKNKDRDKEREKDREKDKEKDRER 319
Query: 631 GFLSSKQKNYDLKKSMENVSAHENHGIKSTD 661
+K+ D +K E E +S +
Sbjct: 320 EREKEHEKDRDKEKEKEQDKEKEREKDRSKE 350
Score = 53 (23.7 bits), Expect = 6.0e-09, Sum P(4) = 6.0e-09
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 284 HRSRSPLRSRHYSKYDNERLSTRDTRDGADRSRRES 319
HRSRS RSR K D R + + R RR+S
Sbjct: 217 HRSRSHNRSRSRQK-DRRRSKSPHKKRSKSRERRKS 251
Score = 47 (21.6 bits), Expect = 6.0e-09, Sum P(4) = 6.0e-09
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 386 KPKYRHRSRSKSMERHDEEKDEARDGKSQ 414
K + + + R K ER E + E GK++
Sbjct: 271 KERVKEKDREKEREREKEREKEKERGKNK 299
Score = 45 (20.9 bits), Expect = 3.7e-08, Sum P(4) = 3.7e-08
Identities = 15/65 (23%), Positives = 25/65 (38%)
Query: 252 RARSRSKXXXXXXXXXXXXXXXXXXXXXXXXGHRSRSPLRSRHYSKYDNERLS-TRDTRD 310
R+RS ++ +RSRS + R SK +++ S +R+ R
Sbjct: 191 RSRSHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKSPHKKRSKSRERRK 250
Query: 311 GADRS 315
RS
Sbjct: 251 SRSRS 255
Score = 45 (20.9 bits), Expect = 6.3e-05, Sum P(3) = 6.3e-05
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 377 RNSPRNDDAKPKYRHRSRSKSMERHDEEKDEA 408
R S + D K K S S + H++E D +
Sbjct: 439 RKSSNDRDGKEKLEKNSTSLKEKEHNKEPDSS 470
Score = 44 (20.5 bits), Expect = 6.5e-07, Sum P(3) = 6.5e-07
Identities = 14/71 (19%), Positives = 27/71 (38%)
Query: 395 SKSMERHDEEKDEARDGKSQHXXXXXXXXXXXXXXHHGRGRSPAGNVDENKSKLRGRSRS 454
S ++E + +E + G+S+ R +S + N+S+ R + R
Sbjct: 174 SAAIEPESGKSNERKGGRSRSHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRR 233
Query: 455 VSALDKYKSSE 465
S K S+
Sbjct: 234 RSKSPHKKRSK 244
Score = 44 (20.5 bits), Expect = 5.0e-06, Sum P(4) = 5.0e-06
Identities = 17/87 (19%), Positives = 32/87 (36%)
Query: 517 KHHRGSRSPRGLDESRTKLGRRSRSKSIERKLYXXXXXXXXXXXXXXKSMLSPANLDRSE 576
+H + + ++ + K + RSK I+ K S + S
Sbjct: 324 EHEKDRDKEKEKEQDKEKEREKDRSKEIDEKRKKDKKSRTPPRSYNA----SRRSRSSSR 379
Query: 577 SNRRRHSASQSKDHANSESAETRDYKS 603
RRR S S S+ S++ + + +S
Sbjct: 380 ERRRRRSRSSSRSPRTSKTIKRKSSRS 406
Score = 41 (19.5 bits), Expect = 0.00095, Sum P(3) = 0.00095
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 285 RSRSPLRSRHYSKYDNERLSTRDTRDGADRSRRESD 320
RSRS RS SK + + +R + RSR + D
Sbjct: 385 RSRSSSRSPRTSK----TIKRKSSRSPSPRSRNKKD 416
Score = 38 (18.4 bits), Expect = 0.00031, Sum P(3) = 0.00031
Identities = 14/72 (19%), Positives = 24/72 (33%)
Query: 384 DAKPKYRHRSRS--KSMERHDEEKDEARDGKSQHXXXXXXXXXXXXXXHHGRGRSPAGNV 441
D K K +SR+ +S + +R+ + + RSP+
Sbjct: 352 DEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPRS 411
Query: 442 DENKSKLRGRSR 453
K K R + R
Sbjct: 412 RNKKDKKREKER 423
Score = 37 (18.1 bits), Expect = 2.2e-07, Sum P(4) = 2.2e-07
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 285 RSRSPLRSRHYSKYDNERLSTRDTRDGADRSRRE 318
RS+SP + R S+ + S +RD +R +
Sbjct: 234 RSKSPHKKRSKSRERRKSRSRSHSRDKRKDTREK 267
>MGI|MGI:2145245 [details] [associations]
symbol:Srek1 "splicing regulatory glutamine/lysine-rich
protein 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 MGI:MGI:2145245 GO:GO:0005739
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 GeneTree:ENSGT00700000104035
eggNOG:NOG277302 KO:K13165 CTD:140890 HOVERGEN:HBG079174
OMA:EKEQDKD OrthoDB:EOG4K3KWS EMBL:AK033354 EMBL:AK037115
EMBL:AK039311 EMBL:AK044086 EMBL:AK052265 EMBL:BC070460
IPI:IPI00227738 IPI:IPI00379480 RefSeq:NP_766180.1
UniGene:Mm.458176 ProteinModelPortal:Q8BZX4 SMR:Q8BZX4
STRING:Q8BZX4 PhosphoSite:Q8BZX4 PaxDb:Q8BZX4 PRIDE:Q8BZX4
Ensembl:ENSMUST00000074616 GeneID:218543 KEGG:mmu:218543
UCSC:uc007rsh.1 InParanoid:Q8BZX4 NextBio:376337 Bgee:Q8BZX4
CleanEx:MM_SFRS12 Genevestigator:Q8BZX4
GermOnline:ENSMUSG00000032621 Uniprot:Q8BZX4
Length = 494
Score = 112 (44.5 bits), Expect = 9.8e-08, Sum P(4) = 9.8e-08
Identities = 32/109 (29%), Positives = 50/109 (45%)
Query: 53 LSGSPDKAGKADALKKTLQVSNL-SPLLTVEQLRQLFSFCGTVVECTI----TDSKHFAY 107
L G+ D + K D +++T+ V NL S T +QL + F G V + T FA+
Sbjct: 55 LMGNVDPS-KIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAF 113
Query: 108 IEYSKPEEATAALALNNMDVGGRPLNVEMAKSFPQKPSHLNSSLAGSSL 156
+E++ ALA N + G RPL + + + KP + A L
Sbjct: 114 VEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAAKEL 162
Score = 66 (28.3 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 33/129 (25%), Positives = 45/129 (34%)
Query: 517 KHHRGSRSPRGLDESRTKLGRRSRSKSIERKLYXXXXXXXXXXXXXXKSMLSPANLDRSE 576
+ H SRS R D R+K + RSKS ER+ + + E
Sbjct: 223 RSHNRSRS-RQKDRRRSKSPHKKRSKSRERRKSRSRSRSRDKRKDTREKVKERVKEKERE 281
Query: 577 SNRRRHSASQSKDHANSESAETRDYKSMHHPHNWDKTEGELNASLKDPTVMEDDGFLSSK 636
R R + KD ++ + K H DK E E KD E D +
Sbjct: 282 KEREREK-DREKDKERGKNKDKDREKEKDHEKERDK-EKEKEQD-KDKE-REKDRSKETD 337
Query: 637 QKNYDLKKS 645
+K KKS
Sbjct: 338 EKRKKEKKS 346
Score = 59 (25.8 bits), Expect = 9.8e-08, Sum P(4) = 9.8e-08
Identities = 21/91 (23%), Positives = 37/91 (40%)
Query: 376 NRNSPRNDDAKPKYRHRSRSKSMERHDE-EKDEARDGKSQHXXXXXXXXXXXXXXHHGRG 434
+R+ + D + K + R + K E+ E EKD +D K + H +
Sbjct: 258 SRSRDKRKDTREKVKERVKEKEREKEREREKDREKD-KER---GKNKDKDREKEKDHEKE 313
Query: 435 RSPAGNVDENKSKLRGRSRSVSALDKYKSSE 465
R +++K K R + RS +K K +
Sbjct: 314 RDKEKEKEQDKDKEREKDRSKETDEKRKKEK 344
Score = 54 (24.1 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 22/76 (28%), Positives = 33/76 (43%)
Query: 390 RHRSRSKSMERHDEEKDEARDGKSQHXXXXXXXXXXXXXXHHGRGRSPAGNVDENKSKLR 449
R RS ++S R K +R +SQ R RS + + +KS+ R
Sbjct: 194 RSRSHTRSKSR-SSSKSHSRRKRSQ-SKHRSRSHNRSRSRQKDRRRSKSPHKKRSKSRER 251
Query: 450 GRSRSVS-ALDKYKSS 464
+SRS S + DK K +
Sbjct: 252 RKSRSRSRSRDKRKDT 267
Score = 53 (23.7 bits), Expect = 9.8e-08, Sum P(4) = 9.8e-08
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 284 HRSRSPLRSRHYSKYDNERLSTRDTRDGADRSRRES 319
HRSRS RSR K D R + + R RR+S
Sbjct: 220 HRSRSHNRSRSRQK-DRRRSKSPHKKRSKSRERRKS 254
Score = 52 (23.4 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 19/78 (24%), Positives = 30/78 (38%)
Query: 345 RSDSGSPKHRQEXXXXXXXXXXXXXXXXXXGNRN-SPRNDDAKPKYRHRSRSKSMERHDE 403
RS S S + R+ +R+ SPR + K K R + R +R +
Sbjct: 358 RSRSTSRERRRRRSRSSSRSPRTSKTVKRKSSRSPSPRGRNKKEKKREKERDHISDRRER 417
Query: 404 EKDEA-------RDGKSQ 414
E+ + RDGK +
Sbjct: 418 ERSTSTKKSSGDRDGKEK 435
Score = 51 (23.0 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 574 RSESNRRRHSASQSKDHANSESAETRDYKSMHH 606
RS S+ R S S SK H+ + ++++ ++S H
Sbjct: 194 RSRSHTRSKSRSSSKSHSRRKRSQSK-HRSRSH 225
Score = 50 (22.7 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 20/91 (21%), Positives = 34/91 (37%)
Query: 376 NRNSPRNDDAK-PKYRHRSRSKSMERHDE-EKDEARDGKSQHXXXXXXXXXXXXXXHHGR 433
N++ R + K R + + K ++ E EKD +++ + R
Sbjct: 299 NKDKDREKEKDHEKERDKEKEKEQDKDKEREKDRSKETDEKRKKEKKSRTPPRSYNASRR 358
Query: 434 GRSPAGNVDENKSKLRGRSRSVSALDKYKSS 464
RS + +S+ RS S K KSS
Sbjct: 359 SRSTSRERRRRRSRSSSRSPRTSKTVKRKSS 389
Score = 49 (22.3 bits), Expect = 9.8e-08, Sum P(4) = 9.8e-08
Identities = 23/87 (26%), Positives = 35/87 (40%)
Query: 517 KHHRGSRSP-RGLDESRTKLGRRSRSKSIERKLYXXXXXXXXXXXXXX---KSMLSPANL 572
K + SR+P R + SR RSRS S ER+ KS SP+
Sbjct: 341 KKEKKSRTPPRSYNASR-----RSRSTSRERRRRRSRSSSRSPRTSKTVKRKSSRSPSPR 395
Query: 573 DRSESNRRRHSASQSKDHANSESAETR 599
R++ ++R + +DH + R
Sbjct: 396 GRNKKEKKRE---KERDHISDRRERER 419
Score = 48 (22.0 bits), Expect = 7.1e-05, Sum P(3) = 7.1e-05
Identities = 16/79 (20%), Positives = 29/79 (36%)
Query: 375 GNRNSPRNDDAKPKYRHRSRSKSMERHDEEKDEARDGKSQHXXXXXXXXXXXXXXHHGRG 434
G N + ++ R +SRS S ++ +++ H +
Sbjct: 185 GKSNERKGGRSRSHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKSPHKK 244
Query: 435 RSPAGNVDENKSKLRGRSR 453
RS + + KS+ R RSR
Sbjct: 245 RSKSR--ERRKSRSRSRSR 261
Score = 44 (20.5 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 12/66 (18%), Positives = 21/66 (31%)
Query: 345 RSDSGSPKHRQEXXXXXXXXXXXXXXXXXXGNRNSPRNDDAKPKYRHRSRSKSMERHDEE 404
R KHR + S + K + R RSR K + ++
Sbjct: 212 RRKRSQSKHRSRSHNRSRSRQKDRRRSKSPHKKRSKSRERRKSRSRSRSRDKRKDTREKV 271
Query: 405 KDEARD 410
K+ ++
Sbjct: 272 KERVKE 277
Score = 44 (20.5 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 14/71 (19%), Positives = 27/71 (38%)
Query: 395 SKSMERHDEEKDEARDGKSQHXXXXXXXXXXXXXXHHGRGRSPAGNVDENKSKLRGRSRS 454
S ++E + +E + G+S+ R +S + N+S+ R + R
Sbjct: 177 SAAIEPESGKSNERKGGRSRSHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRR 236
Query: 455 VSALDKYKSSE 465
S K S+
Sbjct: 237 RSKSPHKKRSK 247
Score = 43 (20.2 bits), Expect = 3.7e-07, Sum P(4) = 3.7e-07
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 575 SESNRRRHSASQSKDHANSESAETRDYKSMHHPHNWDKTE 614
S RRR S S S+ S++ + + +S P +K E
Sbjct: 363 SRERRRRRSRSSSRSPRTSKTVKRKSSRSPS-PRGRNKKE 401
Score = 42 (19.8 bits), Expect = 0.00028, Sum P(3) = 0.00028
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 285 RSRSPLRSRHYSKYDNERLSTRDTRDGADRSR-RESD 320
+SRS RSR K E++ R ++ R RE D
Sbjct: 253 KSRSRSRSRDKRKDTREKVKERVKEKEREKEREREKD 289
Score = 40 (19.1 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 14/79 (17%), Positives = 27/79 (34%)
Query: 377 RNSPRNDDAKPKYRHRSRS--KSMERHDEEKDEARDGKSQHXXXXXXXXXXXXXXHHGRG 434
++ + D K K +SR+ +S + +R+ + +
Sbjct: 330 KDRSKETDEKRKKEKKSRTPPRSYNASRRSRSTSRERRRRRSRSSSRSPRTSKTVKRKSS 389
Query: 435 RSPAGNVDENKSKLRGRSR 453
RSP+ K K R + R
Sbjct: 390 RSPSPRGRNKKEKKREKER 408
>UNIPROTKB|E2R749 [details] [associations]
symbol:SREK1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104035
EMBL:AAEX03001478 Ensembl:ENSCAFT00000012107 Uniprot:E2R749
Length = 510
Score = 112 (44.5 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 32/109 (29%), Positives = 50/109 (45%)
Query: 53 LSGSPDKAGKADALKKTLQVSNL-SPLLTVEQLRQLFSFCGTVVECTI----TDSKHFAY 107
L G+ D + K D +++T+ V NL S T +QL + F G V + T FA+
Sbjct: 52 LMGNVDPS-KIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAF 110
Query: 108 IEYSKPEEATAALALNNMDVGGRPLNVEMAKSFPQKPSHLNSSLAGSSL 156
+E++ ALA N + G RPL + + + KP + A L
Sbjct: 111 VEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAAKEL 159
Score = 65 (27.9 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 37/139 (26%), Positives = 57/139 (41%)
Query: 517 KHHRGSRSP-RGLDESRTKLGRRSRSKSIERKLYXXXXXXXXXXXXXX---KSMLSPANL 572
K + SR+P R + SR RSRS S ER+ KS SP+
Sbjct: 358 KKDKKSRTPPRSYNASR-----RSRSSSRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPR 412
Query: 573 DRSESNRRRHSASQ--SKDHANSESAETRDYKSMHHPHNWDKTEGELNASLKDPT-VMED 629
R++ +++R S+ S+ TR KS + +K E N SLK+ E
Sbjct: 413 SRNKKDKKREKERDHISERRERERSSSTR--KSSNDRDGKEKLEKN-NTSLKEKEHSKEP 469
Query: 630 DGFLSSKQKNYDLKKSMEN 648
D + + + D ++ EN
Sbjct: 470 DLSVGKEVDDKDAPRTEEN 488
Score = 61 (26.5 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 32/133 (24%), Positives = 47/133 (35%)
Query: 284 HRSRSPLRSRHYSKYDNERLSTRDTRDGADRSRRESDIXXXXXXXXXXXXXXXXXXXXXX 343
HRSRS RSR K D R + + R RR+S
Sbjct: 217 HRSRSHNRSRSRQK-DRRRSKSPHKKRSKSRERRKS-------RSRSRSRDKRKDTREKI 268
Query: 344 YRSDSGSPKHRQEXXXXXXXXXXXXXXXXXXG-NRNSPRNDDA-KPKYRHRSRSKSMERH 401
+ K R++ G N++ R D K K + R R + E H
Sbjct: 269 KEKERVKEKDREKEREKERDREKEREKEKERGKNKDKEREKDRDKDKEKDRERERDKE-H 327
Query: 402 DEEKDEARDGKSQ 414
D+E+D+ ++ K Q
Sbjct: 328 DKERDKEKE-KEQ 339
Score = 60 (26.2 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 21/85 (24%), Positives = 37/85 (43%)
Query: 386 KPKYRHRSRSKSMERH---DEEKDEARDGKSQHXXXXXXXXXXXXXXHHGRGRSPAGNVD 442
K K R +++ K E+ D+EKD R+ +H R + + +D
Sbjct: 295 KEKERGKNKDKEREKDRDKDKEKDRERERDKEHDKERDKEKEKEQDKEKERDKDRSKEID 354
Query: 443 ENKSK-LRGRS--RSVSALDKYKSS 464
E + K + R+ RS +A + +SS
Sbjct: 355 EKRKKDKKSRTPPRSYNASRRSRSS 379
Score = 59 (25.8 bits), Expect = 7.7e-05, Sum P(2) = 7.7e-05
Identities = 20/78 (25%), Positives = 31/78 (39%)
Query: 345 RSDSGSPKHRQEXXXXXXXXXXXXXXXXXXGNRN-SPRNDDAKPKYRHRSRSKSMERHDE 403
RS S S + R+ +R+ SPR+ + K K R + R ER +
Sbjct: 375 RSRSSSRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPRSRNKKDKKREKERDHISERRER 434
Query: 404 EKDEA-------RDGKSQ 414
E+ + RDGK +
Sbjct: 435 ERSSSTRKSSNDRDGKEK 452
Score = 59 (25.8 bits), Expect = 7.7e-05, Sum P(2) = 7.7e-05
Identities = 29/118 (24%), Positives = 44/118 (37%)
Query: 530 ESRTKLGRRSRSKSIERKLYXXXXXXXXXXXXXXKSMLSPANLDRSESNRRRHSASQSKD 589
+S + G RSRS + K K N RS RR S S K
Sbjct: 183 KSNERKGGRSRSHT-RSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKSPHKK 241
Query: 590 HANSESAETRDYKSMHHPHNWDKTEGELNASLKDPTVMEDDGFLSSKQKNYDLKKSME 647
S+S E R KS + DK + + +K+ +++ ++K D +K E
Sbjct: 242 R--SKSRERR--KSRSRSRSRDKRK-DTREKIKEKERVKEKDREKEREKERDREKERE 294
Score = 55 (24.4 bits), Expect = 4.2e-07, Sum P(3) = 4.2e-07
Identities = 16/91 (17%), Positives = 33/91 (36%)
Query: 375 GNRNSPRNDDAKPKYRHRSRSKSMERHDEEKDEARDGKSQHXXXXXXXXXXXXXXHHGRG 434
G N + ++ R +SRS S ++ +++ H +
Sbjct: 182 GKSNERKGGRSRSHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKSPHKK 241
Query: 435 RSPAGNVDENKSKLRGRSRSVSALDKYKSSE 465
RS + +++S+ R R + +K K E
Sbjct: 242 RSKSRERRKSRSRSRSRDKRKDTREKIKEKE 272
Score = 54 (24.1 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 30/140 (21%), Positives = 49/140 (35%)
Query: 517 KHHRGSRSPRGLDESRTKLGRRSRSKSIERKLYXXXXXXXXXXXXXXKSMLSPANL---D 573
+ H SRS R D R+K + RSKS ER+ + + + D
Sbjct: 220 RSHNRSRS-RQKDRRRSKSPHKKRSKSRERRKSRSRSRSRDKRKDTREKIKEKERVKEKD 278
Query: 574 RSESNRRRHSASQSKDHANSESAETRDYKSMHHPHNWDKTEGELNASLKDPTVMEDDGFL 633
R E R + + + E + +D K + DK + K+ D
Sbjct: 279 R-EKEREKERDREKEREKEKERGKNKD-KEREKDRDKDKEKDRERERDKEHDKERD---- 332
Query: 634 SSKQKNYDLKKSMENVSAHE 653
K+K D +K + + E
Sbjct: 333 KEKEKEQDKEKERDKDRSKE 352
Score = 51 (23.0 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 19/81 (23%), Positives = 31/81 (38%)
Query: 386 KPKYRHRSRSKSMERHDEEKDEARDGKSQHXXXXXXXXXXXXXXHHGRGRSPAGNVDENK 445
K K R + R K +R E + E GK++ R R + + +K
Sbjct: 275 KEKDREKEREKERDREKEREKEKERGKNKDKEREKDRDKDKEKDRE-RERDKEHDKERDK 333
Query: 446 SKLRGRSRSVSALDKYKSSEI 466
K + + + DK +S EI
Sbjct: 334 EKEKEQDKEKER-DKDRSKEI 353
Score = 51 (23.0 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 20/113 (17%), Positives = 34/113 (30%)
Query: 345 RSDSGSPKHRQEXXXXXXXXXXXXXXXXXXGNRNSPRNDDAKPKYRHRSRSKSMERHDEE 404
R KHR + S + K + R RSR K + ++
Sbjct: 209 RRKRSQSKHRSRSHNRSRSRQKDRRRSKSPHKKRSKSRERRKSRSRSRSRDKRKDTREKI 268
Query: 405 KDEAR----DGKSQHXXXXXXXXXXXXXXHHGRGRSPAGNVDENKSKLRGRSR 453
K++ R D + + G+ + D +K K + R R
Sbjct: 269 KEKERVKEKDREKEREKERDREKEREKEKERGKNKDKEREKDRDKDKEKDRER 321
Score = 48 (22.0 bits), Expect = 5.2e-06, Sum P(3) = 5.2e-06
Identities = 29/151 (19%), Positives = 51/151 (33%)
Query: 515 DGKHHRGSRSPRGLDESRTKLGRRSRSKSIERKLYXXXXXXXXXXXXXXKSMLSPANLDR 574
D +H + + ++ + K + RSK I+ K S +
Sbjct: 324 DKEHDKERDKEKEKEQDKEKERDKDRSKEIDEKRKKDKKSRTPPRSYNA----SRRSRSS 379
Query: 575 SESNRRRHSASQSKDHANSESAETRDYKSM--HHPHNWDKTEGELNASLKDPTVMEDDGF 632
S RRR S S S+ S++ + + +S + DK + + + E
Sbjct: 380 SRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPRSRNKKDKKREKERDHISERRERERSSS 439
Query: 633 LSSKQKNYDLKKSME--NVSAHENHGIKSTD 661
+ D K+ +E N S E K D
Sbjct: 440 TRKSSNDRDGKEKLEKNNTSLKEKEHSKEPD 470
Score = 44 (20.5 bits), Expect = 5.2e-06, Sum P(3) = 5.2e-06
Identities = 14/71 (19%), Positives = 27/71 (38%)
Query: 395 SKSMERHDEEKDEARDGKSQHXXXXXXXXXXXXXXHHGRGRSPAGNVDENKSKLRGRSRS 454
S ++E + +E + G+S+ R +S + N+S+ R + R
Sbjct: 174 SAAIEPESGKSNERKGGRSRSHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRR 233
Query: 455 VSALDKYKSSE 465
S K S+
Sbjct: 234 RSKSPHKKRSK 244
>UNIPROTKB|J9P0H2 [details] [associations]
symbol:SREK1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104035 KO:K13165 CTD:140890 OMA:EKEQDKD
EMBL:AAEX03001478 RefSeq:XP_544361.3 Ensembl:ENSCAFT00000044884
GeneID:487233 KEGG:cfa:487233 Uniprot:J9P0H2
Length = 626
Score = 112 (44.5 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 32/109 (29%), Positives = 50/109 (45%)
Query: 53 LSGSPDKAGKADALKKTLQVSNL-SPLLTVEQLRQLFSFCGTVVECTI----TDSKHFAY 107
L G+ D + K D +++T+ V NL S T +QL + F G V + T FA+
Sbjct: 168 LMGNVDPS-KIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAF 226
Query: 108 IEYSKPEEATAALALNNMDVGGRPLNVEMAKSFPQKPSHLNSSLAGSSL 156
+E++ ALA N + G RPL + + + KP + A L
Sbjct: 227 VEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAAKEL 275
Score = 65 (27.9 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 37/139 (26%), Positives = 57/139 (41%)
Query: 517 KHHRGSRSP-RGLDESRTKLGRRSRSKSIERKLYXXXXXXXXXXXXXX---KSMLSPANL 572
K + SR+P R + SR RSRS S ER+ KS SP+
Sbjct: 474 KKDKKSRTPPRSYNASR-----RSRSSSRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPR 528
Query: 573 DRSESNRRRHSASQ--SKDHANSESAETRDYKSMHHPHNWDKTEGELNASLKDPT-VMED 629
R++ +++R S+ S+ TR KS + +K E N SLK+ E
Sbjct: 529 SRNKKDKKREKERDHISERRERERSSSTR--KSSNDRDGKEKLEKN-NTSLKEKEHSKEP 585
Query: 630 DGFLSSKQKNYDLKKSMEN 648
D + + + D ++ EN
Sbjct: 586 DLSVGKEVDDKDAPRTEEN 604
Score = 61 (26.5 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 32/133 (24%), Positives = 47/133 (35%)
Query: 284 HRSRSPLRSRHYSKYDNERLSTRDTRDGADRSRRESDIXXXXXXXXXXXXXXXXXXXXXX 343
HRSRS RSR K D R + + R RR+S
Sbjct: 333 HRSRSHNRSRSRQK-DRRRSKSPHKKRSKSRERRKS-------RSRSRSRDKRKDTREKI 384
Query: 344 YRSDSGSPKHRQEXXXXXXXXXXXXXXXXXXG-NRNSPRNDDA-KPKYRHRSRSKSMERH 401
+ K R++ G N++ R D K K + R R + E H
Sbjct: 385 KEKERVKEKDREKEREKERDREKEREKEKERGKNKDKEREKDRDKDKEKDRERERDKE-H 443
Query: 402 DEEKDEARDGKSQ 414
D+E+D+ ++ K Q
Sbjct: 444 DKERDKEKE-KEQ 455
Score = 60 (26.2 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 21/85 (24%), Positives = 37/85 (43%)
Query: 386 KPKYRHRSRSKSMERH---DEEKDEARDGKSQHXXXXXXXXXXXXXXHHGRGRSPAGNVD 442
K K R +++ K E+ D+EKD R+ +H R + + +D
Sbjct: 411 KEKERGKNKDKEREKDRDKDKEKDRERERDKEHDKERDKEKEKEQDKEKERDKDRSKEID 470
Query: 443 ENKSK-LRGRS--RSVSALDKYKSS 464
E + K + R+ RS +A + +SS
Sbjct: 471 EKRKKDKKSRTPPRSYNASRRSRSS 495
Score = 59 (25.8 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 20/78 (25%), Positives = 31/78 (39%)
Query: 345 RSDSGSPKHRQEXXXXXXXXXXXXXXXXXXGNRN-SPRNDDAKPKYRHRSRSKSMERHDE 403
RS S S + R+ +R+ SPR+ + K K R + R ER +
Sbjct: 491 RSRSSSRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPRSRNKKDKKREKERDHISERRER 550
Query: 404 EKDEA-------RDGKSQ 414
E+ + RDGK +
Sbjct: 551 ERSSSTRKSSNDRDGKEK 568
Score = 59 (25.8 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 29/118 (24%), Positives = 44/118 (37%)
Query: 530 ESRTKLGRRSRSKSIERKLYXXXXXXXXXXXXXXKSMLSPANLDRSESNRRRHSASQSKD 589
+S + G RSRS + K K N RS RR S S K
Sbjct: 299 KSNERKGGRSRSHT-RSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKSPHKK 357
Query: 590 HANSESAETRDYKSMHHPHNWDKTEGELNASLKDPTVMEDDGFLSSKQKNYDLKKSME 647
S+S E R KS + DK + + +K+ +++ ++K D +K E
Sbjct: 358 R--SKSRERR--KSRSRSRSRDKRK-DTREKIKEKERVKEKDREKEREKERDREKERE 410
Score = 55 (24.4 bits), Expect = 9.3e-07, Sum P(3) = 9.3e-07
Identities = 16/91 (17%), Positives = 33/91 (36%)
Query: 375 GNRNSPRNDDAKPKYRHRSRSKSMERHDEEKDEARDGKSQHXXXXXXXXXXXXXXHHGRG 434
G N + ++ R +SRS S ++ +++ H +
Sbjct: 298 GKSNERKGGRSRSHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKSPHKK 357
Query: 435 RSPAGNVDENKSKLRGRSRSVSALDKYKSSE 465
RS + +++S+ R R + +K K E
Sbjct: 358 RSKSRERRKSRSRSRSRDKRKDTREKIKEKE 388
Score = 54 (24.1 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 30/140 (21%), Positives = 49/140 (35%)
Query: 517 KHHRGSRSPRGLDESRTKLGRRSRSKSIERKLYXXXXXXXXXXXXXXKSMLSPANL---D 573
+ H SRS R D R+K + RSKS ER+ + + + D
Sbjct: 336 RSHNRSRS-RQKDRRRSKSPHKKRSKSRERRKSRSRSRSRDKRKDTREKIKEKERVKEKD 394
Query: 574 RSESNRRRHSASQSKDHANSESAETRDYKSMHHPHNWDKTEGELNASLKDPTVMEDDGFL 633
R E R + + + E + +D K + DK + K+ D
Sbjct: 395 R-EKEREKERDREKEREKEKERGKNKD-KEREKDRDKDKEKDRERERDKEHDKERD---- 448
Query: 634 SSKQKNYDLKKSMENVSAHE 653
K+K D +K + + E
Sbjct: 449 KEKEKEQDKEKERDKDRSKE 468
Score = 51 (23.0 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 19/81 (23%), Positives = 31/81 (38%)
Query: 386 KPKYRHRSRSKSMERHDEEKDEARDGKSQHXXXXXXXXXXXXXXHHGRGRSPAGNVDENK 445
K K R + R K +R E + E GK++ R R + + +K
Sbjct: 391 KEKDREKEREKERDREKEREKEKERGKNKDKEREKDRDKDKEKDRE-RERDKEHDKERDK 449
Query: 446 SKLRGRSRSVSALDKYKSSEI 466
K + + + DK +S EI
Sbjct: 450 EKEKEQDKEKER-DKDRSKEI 469
Score = 51 (23.0 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 20/113 (17%), Positives = 34/113 (30%)
Query: 345 RSDSGSPKHRQEXXXXXXXXXXXXXXXXXXGNRNSPRNDDAKPKYRHRSRSKSMERHDEE 404
R KHR + S + K + R RSR K + ++
Sbjct: 325 RRKRSQSKHRSRSHNRSRSRQKDRRRSKSPHKKRSKSRERRKSRSRSRSRDKRKDTREKI 384
Query: 405 KDEAR----DGKSQHXXXXXXXXXXXXXXHHGRGRSPAGNVDENKSKLRGRSR 453
K++ R D + + G+ + D +K K + R R
Sbjct: 385 KEKERVKEKDREKEREKERDREKEREKEKERGKNKDKEREKDRDKDKEKDRER 437
Score = 48 (22.0 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 29/151 (19%), Positives = 51/151 (33%)
Query: 515 DGKHHRGSRSPRGLDESRTKLGRRSRSKSIERKLYXXXXXXXXXXXXXXKSMLSPANLDR 574
D +H + + ++ + K + RSK I+ K S +
Sbjct: 440 DKEHDKERDKEKEKEQDKEKERDKDRSKEIDEKRKKDKKSRTPPRSYNA----SRRSRSS 495
Query: 575 SESNRRRHSASQSKDHANSESAETRDYKSM--HHPHNWDKTEGELNASLKDPTVMEDDGF 632
S RRR S S S+ S++ + + +S + DK + + + E
Sbjct: 496 SRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPRSRNKKDKKREKERDHISERRERERSSS 555
Query: 633 LSSKQKNYDLKKSME--NVSAHENHGIKSTD 661
+ D K+ +E N S E K D
Sbjct: 556 TRKSSNDRDGKEKLEKNNTSLKEKEHSKEPD 586
Score = 44 (20.5 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 14/71 (19%), Positives = 27/71 (38%)
Query: 395 SKSMERHDEEKDEARDGKSQHXXXXXXXXXXXXXXHHGRGRSPAGNVDENKSKLRGRSRS 454
S ++E + +E + G+S+ R +S + N+S+ R + R
Sbjct: 290 SAAIEPESGKSNERKGGRSRSHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRR 349
Query: 455 VSALDKYKSSE 465
S K S+
Sbjct: 350 RSKSPHKKRSK 360
>TAIR|locus:2024842 [details] [associations]
symbol:CID8 "CTC-interacting domain 8" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0005515
"protein binding" evidence=IPI] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818 Pfam:PF07145
EMBL:AC024260 HSSP:P11940 EMBL:BT014885 IPI:IPI00524059 PIR:F96576
RefSeq:NP_175769.1 UniGene:At.37370 ProteinModelPortal:Q9C8M0
SMR:Q9C8M0 STRING:Q9C8M0 EnsemblPlants:AT1G53650.1 GeneID:841802
KEGG:ath:AT1G53650 TAIR:At1g53650 HOGENOM:HOG000006309
InParanoid:Q9C8M0 OMA:ITEMATD PhylomeDB:Q9C8M0
ProtClustDB:CLSN2682126 Genevestigator:Q9C8M0 Uniprot:Q9C8M0
Length = 314
Score = 143 (55.4 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 36/104 (34%), Positives = 58/104 (55%)
Query: 53 LSGSPDKAGKADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKH----FAYI 108
L G KA + D++++T+ VS++ +T E L LFS CG VV+C I + FA++
Sbjct: 113 LPGRASKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLRFAFV 172
Query: 109 EYSKPEEATAALALNNMDVGGRPLNVEMAKS--FPQKPSHLNSS 150
E+S + A +AL+L +G P+ V +K+ P P+ L S
Sbjct: 173 EFSDDQGARSALSLGGTMIGYYPVRVLPSKTAILPVNPTFLPRS 216
>TAIR|locus:2091657 [details] [associations]
symbol:CID9 "CTC-interacting domain 9" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818 Pfam:PF07145
EMBL:AB028617 HSSP:P11940 HOGENOM:HOG000006309 IPI:IPI00526270
RefSeq:NP_188063.1 UniGene:At.53311 ProteinModelPortal:Q9LRR6
SMR:Q9LRR6 EnsemblPlants:AT3G14450.1 GeneID:820668
KEGG:ath:AT3G14450 TAIR:At3g14450 eggNOG:NOG243629
InParanoid:Q9LRR6 OMA:PRVNRVG PhylomeDB:Q9LRR6
ProtClustDB:CLSN2915572 Genevestigator:Q9LRR6 Uniprot:Q9LRR6
Length = 327
Score = 141 (54.7 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 36/104 (34%), Positives = 58/104 (55%)
Query: 53 LSGSPDKAGKADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKH----FAYI 108
L+G KA + D++++T+ VS++ +T E L LFS CG VV+C I H FA++
Sbjct: 126 LTGRISKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLRFAFV 185
Query: 109 EYSKPEEATAALALNNMDVGGRPLNVEMAKS--FPQKPSHLNSS 150
E++ + A AL+L +G P+ V +K+ P P+ L S
Sbjct: 186 EFADDQGAHEALSLGGTMLGFYPVRVLPSKTAILPVNPTFLPRS 229
>TAIR|locus:2184022 [details] [associations]
symbol:CID13 "CTC-interacting domain 13" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818 Pfam:PF07145
EMBL:AB025641 HOGENOM:HOG000006309 IPI:IPI00536712
RefSeq:NP_197832.1 UniGene:At.54975 ProteinModelPortal:Q9FGE6
SMR:Q9FGE6 EnsemblPlants:AT5G24440.1 GeneID:832515
KEGG:ath:AT5G24440 TAIR:At5g24440 eggNOG:NOG303272
InParanoid:Q9FGE6 OMA:FKLAESA PhylomeDB:Q9FGE6
ProtClustDB:CLSN2916288 Genevestigator:Q9FGE6 Uniprot:Q9FGE6
Length = 320
Score = 136 (52.9 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 36/93 (38%), Positives = 52/93 (55%)
Query: 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT-DSK---HFAYIEYSKPEEATAA 119
D +K+T+ VS++ +T EQL LF CG VV+C + D K FA+IE++ E A +A
Sbjct: 133 DMIKRTVYVSDIDNQVTEEQLASLFLSCGQVVDCRMCGDYKSILRFAFIEFTDAEGARSA 192
Query: 120 LALNNMDVGGRPLNVEMAKSF--PQKPSHLNSS 150
L + G P+ V M+K+ P PS L S
Sbjct: 193 LRKSGTMFGSHPIRVFMSKTAIAPVNPSFLPQS 225
>TAIR|locus:2082961 [details] [associations]
symbol:CID10 "CTC-interacting domain 10" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002686 GO:GO:0000166 EMBL:AC012329
EMBL:AL132956 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818
Pfam:PF07145 EMBL:AK317338 IPI:IPI00545615 PIR:T45844
RefSeq:NP_001030833.1 RefSeq:NP_190508.1 UniGene:At.738
ProteinModelPortal:Q9SG10 SMR:Q9SG10 PRIDE:Q9SG10
EnsemblPlants:AT3G49390.1 EnsemblPlants:AT3G49390.2 GeneID:824101
KEGG:ath:AT3G49390 TAIR:At3g49390 InParanoid:Q9SG10 OMA:ETDDRIN
PhylomeDB:Q9SG10 ProtClustDB:CLSN2684239 Genevestigator:Q9SG10
Uniprot:Q9SG10
Length = 353
Score = 126 (49.4 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 33/97 (34%), Positives = 54/97 (55%)
Query: 60 AGKADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKH----FAYIEYSKPEE 115
A K D +++T+ VS++ +T E L +F CG VV+C + + FA+IE++ E
Sbjct: 161 AQKDDVIRRTVYVSDIDQQVTEENLAGVFINCGQVVDCRVCGDPNSVLRFAFIEFTNEEG 220
Query: 116 ATAALALNNMDVGGRPLNVEMAKSF--PQKPSHLNSS 150
A AAL+++ +G PL V +K+ P P+ L S
Sbjct: 221 ARAALSMSGTVLGFYPLKVLPSKTAIAPVNPTFLPRS 257
>UNIPROTKB|F1MAM3 [details] [associations]
symbol:Sfrs11 "Protein Sfrs11" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949618 Ensembl:ENSRNOT00000064725 ArrayExpress:F1MAM3
Uniprot:F1MAM3
Length = 511
Score = 80 (33.2 bits), Expect = 6.5e-05, Sum P(3) = 6.5e-05
Identities = 22/76 (28%), Positives = 36/76 (47%)
Query: 57 PDKAGKADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTI---TD-----SKHFAYI 108
P +G + +QV+N+SP + EQ+R LF F G + E + D S ++
Sbjct: 50 PGPSGGPGGGTEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFPPDDSPLPVSSRVCFV 109
Query: 109 EYSKPEEATAALALNN 124
++ P+ A A L N
Sbjct: 110 KFHDPDSAVVAQHLTN 125
Score = 74 (31.1 bits), Expect = 6.5e-05, Sum P(3) = 6.5e-05
Identities = 42/147 (28%), Positives = 56/147 (38%)
Query: 537 RRSRSKSIERKLYXXXXXXXXXXXXXXKSMLSPAN-LDRSESNRRRHSASQSKDHANSES 595
RRSRS S ER+ K SP L RS S RR H + KD S
Sbjct: 362 RRSRSASRERR-----RRRSRSGTRSPKKPRSPKRKLSRSPSPRR-HKKEKKKDKDKERS 415
Query: 596 AETRDYKSMHHPHNWDKTEGELNASLKDPTVM--------EDDGFLSSKQKNYDLKKSME 647
+ R+ + + DK + S D V E+ G+ S K+K + K+ E
Sbjct: 416 RDERERSTSKKKRSKDKEKERERKSESDKDVKQVTRDYDEEEQGYDSEKEKKEE-KRPTE 474
Query: 648 NVS--AHE---NHGIKSTDPLMLNSDD 669
VS A E G+ +N DD
Sbjct: 475 AVSPKAKECSVEKGVGDLRESKVNGDD 501
Score = 59 (25.8 bits), Expect = 6.5e-05, Sum P(3) = 6.5e-05
Identities = 25/84 (29%), Positives = 32/84 (38%)
Query: 384 DAKPKYRHRSRSKSMERHDEEKDEARDGKSQHXXXXXXXXXXXXXXHHGRGRSPAGNVDE 443
D K + R SRS+S R +R H R RS +
Sbjct: 268 DKKEEKRRHSRSRSRSRRRRTPSSSR-----HRRSRSRSRRRSHSKSRSRRRSKSPRRRR 322
Query: 444 NKSKLRGR-SRSVS-ALDKYKSSE 465
+ S+ RGR SRS S A DK K +
Sbjct: 323 SHSRERGRRSRSTSKARDKKKEDK 346
>TAIR|locus:2035629 [details] [associations]
symbol:CID11 "CTC-interacting domain 11" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0046482 "para-aminobenzoic acid metabolic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818 Pfam:PF07145
IPI:IPI00657306 RefSeq:NP_001031131.1 UniGene:At.27546
ProteinModelPortal:F4IEC7 SMR:F4IEC7 PRIDE:F4IEC7
EnsemblPlants:AT1G32790.2 GeneID:840173 KEGG:ath:AT1G32790
OMA:NARTSMA PhylomeDB:F4IEC7 Uniprot:F4IEC7
Length = 406
Score = 126 (49.4 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 34/94 (36%), Positives = 52/94 (55%)
Query: 60 AGKADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKH----FAYIEYSKPEE 115
A + D +++T+ VS+L +T EQL LF CG VV+C I + FA+IE++ E
Sbjct: 165 AQREDVIRRTVYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPNSVLRFAFIEFTDEEG 224
Query: 116 ATAALALNNMDVGGRPLNVEMAKSF--PQKPSHL 147
A AL L+ +G P+ V +K+ P P+ L
Sbjct: 225 AMTALNLSGTMLGFYPVKVLPSKTAIAPVNPTFL 258
>DICTYBASE|DDB_G0291966 [details] [associations]
symbol:DDB_G0291966 "CCHC-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 dictyBase:DDB_G0291966
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000186 Gene3D:4.10.60.10 OMA:SKISVEW
eggNOG:NOG77895 RefSeq:XP_001134500.1 ProteinModelPortal:Q1ZXB1
EnsemblProtists:DDB0233327 GeneID:8628419 KEGG:ddi:DDB_G0291966
InParanoid:Q1ZXB1 ProtClustDB:CLSZ2846728 Uniprot:Q1ZXB1
Length = 312
Score = 79 (32.9 bits), Expect = 7.6e-05, Sum P(3) = 7.6e-05
Identities = 23/73 (31%), Positives = 38/73 (52%)
Query: 69 TLQVSNLSPLLTVEQLRQLFSFCGTVVECTI--TDSKHFAYIEYSKPEEATAAL-ALNNM 125
+L + LS T + L FS GT+ + T+ + +A++EY + +A AL ALN
Sbjct: 2 SLYIGRLSVETTQKNLNDHFSKYGTITRNDVKKTNGRCYAFVEYKERRDADDALKALNGT 61
Query: 126 DVGGRPLNVEMAK 138
+ ++VE AK
Sbjct: 62 TLLNSKISVEWAK 74
Score = 72 (30.4 bits), Expect = 7.6e-05, Sum P(3) = 7.6e-05
Identities = 20/77 (25%), Positives = 32/77 (41%)
Query: 381 RNDDAKPKYRHRSRSKSMERHDEEKDEARDGKSQHXXXXXXXXXXXXXXH-HGRGRSPAG 439
R D ++ + R RSR +S +R + +D RD + + R R
Sbjct: 130 RRDRSRDRSRDRSRDRSRDRSRDRRDRRRDRRDRSRDRSRDGRRERSRDRSRDRSRDARR 189
Query: 440 NVDENKSKLRGRSRSVS 456
N D ++ + R RSR S
Sbjct: 190 NRDTSRDRSRDRSRDRS 206
Score = 63 (27.2 bits), Expect = 0.00058, Sum P(3) = 0.00058
Identities = 23/92 (25%), Positives = 39/92 (42%)
Query: 376 NRNSPRNDDAKPKYRHRSRSKSME-RHDEEKDEARDGKSQHXXXXXXXXXXXXXXHHGRG 434
+R+ R D + + R RSR +S + R + +D +RD R
Sbjct: 148 DRSRDRRDRRRDR-RDRSRDRSRDGRRERSRDRSRDRSRDARRNRDTSRDRSRDRSRDRS 206
Query: 435 RSPAGNV--DENKSKLRGRSRSVSALDKYKSS 464
R GN+ D ++ + R SR S D+ +S+
Sbjct: 207 RD-GGNIIRDTSRDRRRNNSRDRSR-DRSRSN 236
Score = 53 (23.7 bits), Expect = 7.6e-05, Sum P(3) = 7.6e-05
Identities = 18/80 (22%), Positives = 29/80 (36%)
Query: 513 SADGKHHRGSRSPRGLDESRTKLGRRSRSKSIERKLYXXXXXXXXXXXXXXKSMLSPANL 572
S G SR R D SR + R RS+S++++ + N
Sbjct: 235 SNGGGSRYSSRRDRSRDRSRDR--SRDRSRSLKKEKKRDSSLSKERIAAGDAASADSGNN 292
Query: 573 DRSESNRRRHSASQSKDHAN 592
R S S+S+ ++N
Sbjct: 293 ANGNGRSRERSRSRSRSNSN 312
>ZFIN|ZDB-GENE-030131-3019 [details] [associations]
symbol:rbm4.2 "RNA binding motif protein 4.2"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-030131-3019 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 HSSP:P19339
HOGENOM:HOG000026790 HOVERGEN:HBG062217 EMBL:BC044503 EMBL:BC153457
IPI:IPI00493444 RefSeq:NP_955971.1 UniGene:Dr.123162 SMR:Q803F7
STRING:Q803F7 GeneID:557528 KEGG:dre:557528 CTD:557528
InParanoid:Q803F7 NextBio:20882029 Uniprot:Q803F7
Length = 385
Score = 125 (49.1 bits), Expect = 7.6e-05, P = 7.6e-05
Identities = 28/80 (35%), Positives = 48/80 (60%)
Query: 72 VSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAALA-LNNMDVGGR 130
+ NLSP T + LR LFS G V EC + K++ ++ +EA AA+ L++ ++ G+
Sbjct: 6 IGNLSPTSTADDLRSLFSEFGIVKECDVL--KNYGFVHMDSKKEAEAAIRKLHHYELKGQ 63
Query: 131 PLNVEMAKSFPQKPSHLNSS 150
+NVE++K P+ + L+ S
Sbjct: 64 AINVELSKGKPRGSTKLHVS 83
>ZFIN|ZDB-GENE-030131-3902 [details] [associations]
symbol:rbm4.1 "RNA binding motif protein 4.1"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-030131-3902 GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10
eggNOG:NOG294108 GeneTree:ENSGT00390000020883 KO:K13187
EMBL:BC046057 EMBL:BC071513 IPI:IPI00501593 RefSeq:NP_955999.1
UniGene:Dr.132298 ProteinModelPortal:Q6IQ97 SMR:Q6IQ97 PRIDE:Q6IQ97
Ensembl:ENSDART00000052862 GeneID:573001 KEGG:dre:573001 CTD:573001
HOGENOM:HOG000026790 HOVERGEN:HBG062217 InParanoid:Q6IQ97
OMA:PYEERDP OrthoDB:EOG4NP74W NextBio:20891027 ArrayExpress:Q6IQ97
Bgee:Q6IQ97 Uniprot:Q6IQ97
Length = 419
Score = 125 (49.1 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 31/85 (36%), Positives = 46/85 (54%)
Query: 72 VSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAALA-LNNMDVGGR 130
V NLSP T E++R LFS G + EC I K+F ++ EA A+ L++ + G
Sbjct: 6 VGNLSPNTTAEEIRSLFSQYGKISECDIV--KNFGFVHMDSKSEADEAIQNLHHYMLNGM 63
Query: 131 PLNVEMAKSFPQKPSHLNSSLAGSS 155
+NVEM+K P+ + L+ SS
Sbjct: 64 AMNVEMSKGKPKTSTKLHVGNISSS 88
>TAIR|locus:2171780 [details] [associations]
symbol:AT5G65260 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB013395 eggNOG:NOG238057
HOGENOM:HOG000208465 HSSP:P33240 OMA:GRANYYA EMBL:AF386984
EMBL:BT000018 IPI:IPI00548869 RefSeq:NP_201329.1 UniGene:At.24028
UniGene:At.9297 ProteinModelPortal:Q9FJN9 SMR:Q9FJN9 IntAct:Q9FJN9
STRING:Q9FJN9 PaxDb:Q9FJN9 PRIDE:Q9FJN9 EnsemblPlants:AT5G65260.1
GeneID:836651 KEGG:ath:AT5G65260 TAIR:At5g65260 InParanoid:Q9FJN9
PhylomeDB:Q9FJN9 ProtClustDB:CLSN2715990 ArrayExpress:Q9FJN9
Genevestigator:Q9FJN9 Uniprot:Q9FJN9
Length = 220
Score = 119 (46.9 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 58 DKAGKADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTI-TDS----KHFAYIEYSK 112
++AGK + +++ V N+ T E+++Q F CGTV TI TD K FAY+E+ +
Sbjct: 82 NQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVE 141
Query: 113 PEEATAALALNNMDVGGRPLNV 134
E AL LN ++ GR L V
Sbjct: 142 VEAVQEALQLNESELHGRQLKV 163
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 102 (41.0 bits), Expect = 0.00011, P = 0.00011
Identities = 35/97 (36%), Positives = 51/97 (52%)
Query: 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECT-ITDS-----KHFAYIEYSKPEEA 116
A + L VS LS T + LRQLFS G + E I DS K F +I + ++A
Sbjct: 2 AKRISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDA 61
Query: 117 TAAL-ALNNMDVGGRPLNVEMAKSFPQKPSHLNSSLA 152
AL +L+ V GR + VE+AK+ + + +NS+ A
Sbjct: 62 RKALKSLDGKIVDGRLIFVEVAKNAEEVRAGINSNKA 98
>DICTYBASE|DDB_G0292698 [details] [associations]
symbol:DDB_G0292698 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0292698 GO:GO:0000166
EMBL:AAFI02000194 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG297815
RefSeq:XP_629578.1 ProteinModelPortal:Q54CU2 STRING:Q54CU2
PRIDE:Q54CU2 EnsemblProtists:DDB0233351 GeneID:8628839
KEGG:ddi:DDB_G0292698 InParanoid:Q54CU2 OMA:DPNTKES Uniprot:Q54CU2
Length = 306
Score = 110 (43.8 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 69 TLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAALA- 121
TL VSNL+P LR F+ G V++CTI +S+ F ++ YS +EA A+
Sbjct: 72 TLHVSNLNPRTRESDLRDTFASIGKVIDCTILLDPNTKESRGFGFVTYSSGDEAQDAIQR 131
Query: 122 LNNMDVGGRPLNVEMAK 138
L++ + G + VE +K
Sbjct: 132 LDSTKIDGNTIRVEKSK 148
Score = 52 (23.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 13/59 (22%), Positives = 19/59 (32%)
Query: 387 PKYRHRSRSKSMERHDEEKDEARDGKSQHXXXXXXXXXXXXXXHHGRGRSPAGNVDENK 445
PKY + S + + RD + HH R R +GN D +
Sbjct: 241 PKYNNNDSRYSP--YGRRGGDDRDSRRSSSSSSSSSSSSHVDHHHDRDRRSSGNDDRGR 297
>TAIR|locus:2119505 [details] [associations]
symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
Genevestigator:Q6ID29 Uniprot:Q6ID29
Length = 87
Score = 101 (40.6 bits), Expect = 0.00014, P = 0.00014
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 72 VSNLSPLLTVEQLRQLFSFCGTVVECTI-----TD-SKHFAYIEYSKPEEATAALA-LNN 124
V NLSP T + LR+ FS G VV+ + TD S+ F ++ YS EA AA++ ++
Sbjct: 7 VGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDG 66
Query: 125 MDVGGRPLNVEM 136
++ GR ++V++
Sbjct: 67 KELNGRRVSVKL 78
>DICTYBASE|DDB_G0292710 [details] [associations]
symbol:DDB_G0292710 "peptidylprolyl isomerase"
species:44689 "Dictyostelium discoideum" [GO:0006457 "protein
folding" evidence=IEA] [GO:0003755 "peptidyl-prolyl cis-trans
isomerase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000413 "protein peptidyl-prolyl
isomerization" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002130 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153 PROSITE:PS50072
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0292710 GO:GO:0006457
GO:GO:0000166 EMBL:AAFI02000194 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0652 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
KO:K12735 OMA:DRTQNRS RefSeq:XP_629577.1 ProteinModelPortal:Q54CU3
STRING:Q54CU3 EnsemblProtists:DDB0215524 GeneID:8628838
KEGG:ddi:DDB_G0292710 InParanoid:Q54CU3 ProtClustDB:CLSZ2846584
Uniprot:Q54CU3
Length = 489
Score = 112 (44.5 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 30/87 (34%), Positives = 46/87 (52%)
Query: 70 LQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAA-LAL 122
L V L+P+ E L +FS CGTV C + DS +A++EYS EE A L L
Sbjct: 245 LFVCKLNPITEAEDLELVFSQCGTVKSCEVVRDKVTNDSLCYAFVEYSTKEECEKAYLKL 304
Query: 123 NNMDVGGRPLNVEMAKSFPQKPSHLNS 149
N+ + R ++V+ +S + ++ NS
Sbjct: 305 ENILIDERRIHVDFCQSVAKVRNNQNS 331
Score = 55 (24.4 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 571 NLDRSESNRRRHSASQSKDHANSESAETRD-YKSM-HHPHNWDKTEGELNASLKD 623
N + +SN + K ++S S+E+ + YK HH N++++ N + D
Sbjct: 374 NFKKQKSNEKDSRERDMKSSSSSSSSESDNRYKDRNHHDRNYNRSYDRDNRNKDD 428
>ZFIN|ZDB-GENE-040426-2706 [details] [associations]
symbol:srsf2a "serine/arginine-rich splicing
factor 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2706
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 KO:K12891 OrthoDB:EOG4D26RH OMA:SAPPRRY
EMBL:CR352342 EMBL:BC046045 IPI:IPI00482409 RefSeq:NP_998547.1
UniGene:Dr.76609 SMR:Q7ZV13 STRING:Q7ZV13
Ensembl:ENSDART00000080173 GeneID:406691 KEGG:dre:406691 CTD:406691
InParanoid:Q7ZV13 NextBio:20818218 Uniprot:Q7ZV13
Length = 225
Score = 84 (34.6 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 27/83 (32%), Positives = 35/83 (42%)
Query: 516 GKHHRGSRSPRGLDESRTKLGRRSRSKSIERKLYXXXXXXXXXXXXXXKSMLSPANLDR- 574
G+ R SRSPR SR++ RSRS+S R Y S R
Sbjct: 114 GRRSR-SRSPRRRKHSRSRSRSRSRSRSRSRSRYSRSRSRSYSRSRSRSRSRSKTRTPRR 172
Query: 575 --SESNRRRHSASQSKDHANSES 595
S+S R S S+SK H+ S +
Sbjct: 173 SKSKSPSRSRSRSKSKSHSRSRT 195
Score = 74 (31.1 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 23/77 (29%), Positives = 42/77 (54%)
Query: 69 TLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-A 121
+L+V NL+ + E LR++F G V + I +S+ FA++ + +A A+ A
Sbjct: 15 SLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 122 LNNMDVGGRPLNVEMAK 138
++ + GR L V+MA+
Sbjct: 75 MDGALLDGRELRVQMAR 91
Score = 63 (27.2 bits), Expect = 0.00048, Sum P(3) = 0.00048
Identities = 19/76 (25%), Positives = 28/76 (36%)
Query: 379 SPRNDDAKPKYRHRSRSKSMERHDEEKDEARDGKSQHXXXXXXXXXXXXXXHHGRGRSPA 438
SPR + R RSRS+S R +R + +SP+
Sbjct: 121 SPRRRKHS-RSRSRSRSRSRSRSRSRYSRSRSRSYSRSRSRSRSRSKTRTPRRSKSKSPS 179
Query: 439 GNVDENKSKLRGRSRS 454
+ +KSK RSR+
Sbjct: 180 RSRSRSKSKSHSRSRT 195
Score = 53 (23.7 bits), Expect = 0.00048, Sum P(3) = 0.00048
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 517 KHHRGSRSPRGLDESRTKLGRRSRSKSIE 545
K H SR+PR S+++ RSR KS E
Sbjct: 188 KSHSRSRTPRSNKGSKSRSRSRSRPKSPE 216
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 124 (48.7 bits), Expect = 0.00022, P = 0.00022
Identities = 35/104 (33%), Positives = 54/104 (51%)
Query: 55 GSPDKAGKADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT-D----SKHFAYIE 109
GS D K D L L V NL +T E+LR+LF+ GT+ C + D SK ++
Sbjct: 317 GSSDGGNKFDGLN--LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVA 374
Query: 110 YSKPEEATAAL-ALNNMDVGGRPLNVEMAKSFPQKPSHLNSSLA 152
+S EA+ L +N VGG+PL V +A+ ++ + L + +
Sbjct: 375 FSAASEASRVLNEMNGKMVGGKPLYVALAQRKEERRAKLQAQFS 418
>ZFIN|ZDB-GENE-040426-2455 [details] [associations]
symbol:rbm14b "RNA binding motif protein 14b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-040426-2455 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 SUPFAM:SSF57756 HSSP:P19339
KO:K13189 HOVERGEN:HBG062132 EMBL:BC056604 EMBL:BC068361
IPI:IPI00492284 RefSeq:NP_997973.1 UniGene:Dr.132507 GeneID:402858
KEGG:dre:402858 CTD:402858 InParanoid:Q6NV05 NextBio:20816684
Uniprot:Q6NV05
Length = 556
Score = 122 (48.0 bits), Expect = 0.00029, P = 0.00029
Identities = 29/73 (39%), Positives = 42/73 (57%)
Query: 72 VSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDVGGR 130
V NLS + T E L++LF G V+EC K +A++ E+A A+ AL+ GR
Sbjct: 87 VGNLSSMCTTEDLQELFQTFGKVLECDKV--KGYAFVHMENKEDALQAIEALHGTSFKGR 144
Query: 131 PLNVEMAKSFPQK 143
PL+VE++K P K
Sbjct: 145 PLSVELSKVQPSK 157
>UNIPROTKB|E9PLB0 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:28842 ChiTaRS:RBM4B IPI:IPI00979194
ProteinModelPortal:E9PLB0 SMR:E9PLB0 Ensembl:ENST00000531969
ArrayExpress:E9PLB0 Bgee:E9PLB0 Uniprot:E9PLB0
Length = 143
Score = 102 (41.0 bits), Expect = 0.00043, P = 0.00043
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 62 KADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL- 120
K+ A K L V N+SP T ++LR F G V+EC I K +A++ + E+A A+
Sbjct: 73 KSKASTK-LHVGNISPTCTNQELRAKFEEYGPVIECDIV--KDYAFVHMERAEDAVEAIR 129
Query: 121 ALNNMDVGGR 130
L+N + GR
Sbjct: 130 GLDNTEFQGR 139
>UNIPROTKB|Q47X92 [details] [associations]
symbol:CPS_3920 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
HOGENOM:HOG000276232 RefSeq:YP_270578.1 ProteinModelPortal:Q47X92
STRING:Q47X92 GeneID:3522867 KEGG:cps:CPS_3920 PATRIC:21470731
eggNOG:NOG258387 OMA:HELEGRQ ProtClustDB:CLSK913470
BioCyc:CPSY167879:GI48-3933-MONOMER Uniprot:Q47X92
Length = 78
Score = 96 (38.9 bits), Expect = 0.00048, P = 0.00048
Identities = 30/76 (39%), Positives = 42/76 (55%)
Query: 70 LQVSNLSPLLTVEQLRQLFSFCGTVVECTIT-D-----SKHFAYIEYSKPEEATAALA-L 122
L V NLS T ++LR LFS GTV EC++ D SK FA++E EA AL+ L
Sbjct: 3 LLVRNLSRSTTEQELRILFSAHGTVAECSLVLDQATAKSKGFAFVEMPNEAEAKVALSSL 62
Query: 123 NNMDVGGRPLNVEMAK 138
+ V + V++A+
Sbjct: 63 HETRVAKNKIRVKIAQ 78
>TIGR_CMR|CPS_3920 [details] [associations]
symbol:CPS_3920 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR HOGENOM:HOG000276232
RefSeq:YP_270578.1 ProteinModelPortal:Q47X92 STRING:Q47X92
GeneID:3522867 KEGG:cps:CPS_3920 PATRIC:21470731 eggNOG:NOG258387
OMA:HELEGRQ ProtClustDB:CLSK913470
BioCyc:CPSY167879:GI48-3933-MONOMER Uniprot:Q47X92
Length = 78
Score = 96 (38.9 bits), Expect = 0.00048, P = 0.00048
Identities = 30/76 (39%), Positives = 42/76 (55%)
Query: 70 LQVSNLSPLLTVEQLRQLFSFCGTVVECTIT-D-----SKHFAYIEYSKPEEATAALA-L 122
L V NLS T ++LR LFS GTV EC++ D SK FA++E EA AL+ L
Sbjct: 3 LLVRNLSRSTTEQELRILFSAHGTVAECSLVLDQATAKSKGFAFVEMPNEAEAKVALSSL 62
Query: 123 NNMDVGGRPLNVEMAK 138
+ V + V++A+
Sbjct: 63 HETRVAKNKIRVKIAQ 78
>UNIPROTKB|H0YEU6 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000527718 Uniprot:H0YEU6
Length = 249
Score = 114 (45.2 bits), Expect = 0.00052, P = 0.00051
Identities = 29/85 (34%), Positives = 48/85 (56%)
Query: 70 LQVSNLSPLLTVEQLRQLFSFCGTVVECTIT--D--SKHFAYIEYSKPEEATAALA-LNN 124
L + NL + E+LR+ FS G++ + D SK F ++ +S PEEAT A+ +N
Sbjct: 23 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 82
Query: 125 MDVGGRPLNVEMAKSFPQKPSHLNS 149
VG +PL V +A+ ++ +HL +
Sbjct: 83 RIVGSKPLYVALAQRKEERKAHLTN 107
>ZFIN|ZDB-GENE-040801-132 [details] [associations]
symbol:srek1 "splicing regulatory
glutamine/lysine-rich protein 1" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040801-132 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104035
eggNOG:NOG277302 OrthoDB:EOG4K3KWS HOGENOM:HOG000121772
EMBL:BX950207 EMBL:CU207241 EMBL:CU467961 IPI:IPI00497438
UniGene:Dr.81675 Ensembl:ENSDART00000134937 HOVERGEN:HBG097523
InParanoid:A2BIN4 Uniprot:A2BIN4
Length = 515
Score = 111 (44.1 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 32/109 (29%), Positives = 50/109 (45%)
Query: 53 LSGSPDKAGKADALKKTLQVSNL-SPLLTVEQLRQLFSFCGTVVECTI----TDSKHFAY 107
L G+ D + K D +++T+ V NL S T +QL + F G V + T FA+
Sbjct: 157 LMGNVDPS-KVDEIRRTVYVGNLNSQSTTADQLLKFFKQVGDVKFVRMAGDETQPTRFAF 215
Query: 108 IEYSKPEEATAALALNNMDVGGRPLNVEMAKSFPQKPSHLNSSLAGSSL 156
+E++ + AL N + G RPL + + + KP L A L
Sbjct: 216 VEFADQDSVARALTYNGVMFGDRPLKINHSNNAIVKPPELTPQAAAKEL 264
Score = 52 (23.4 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 567 LSPANLDRSESNRRRHSASQSKDHANSESAETRDY-KSMHHPHNWDKTEGELNAS 620
+ P N + S+R RHS +S+ H+ S S R +S H H ++ N S
Sbjct: 282 IEPEN-ELPSSSRSRHSR-RSRSHSCSPSNSRRKRSRSRHRGHPSKRSRQRFNDS 334
>UNIPROTKB|Q3MHR5 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 EMBL:BC105138
IPI:IPI00690339 RefSeq:NP_001029490.1 UniGene:Bt.2466
ProteinModelPortal:Q3MHR5 SMR:Q3MHR5 STRING:Q3MHR5 PRIDE:Q3MHR5
Ensembl:ENSBTAT00000024299 GeneID:508312 KEGG:bta:508312 CTD:6427
InParanoid:Q3MHR5 OMA:DHRRRTR OrthoDB:EOG4D26RH NextBio:20868455
Uniprot:Q3MHR5
Length = 221
Score = 79 (32.9 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 37/122 (30%), Positives = 51/122 (41%)
Query: 516 GKHHRGSRSPRGLDESRTKLGRRSRSKSIERKLYXXXXXXXXXXXXXXKSMLSPANLDRS 575
G + R SRSPR SR++ RSRS+S R Y KS + RS
Sbjct: 113 GGYGRRSRSPRRRRRSRSR--SRSRSRSRSRSRYSRS-----------KSRSRTRSRSRS 159
Query: 576 ESNRRRHSASQSKDHANSES-AETRDYKSMHHPHNWDKTEGELNASLKDPTVM-EDDGFL 633
S R S+SK + S S + +R P K E + + K P E++G +
Sbjct: 160 TSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPPPVSKRESKSRSRSKSPPKSPEEEGAV 219
Query: 634 SS 635
SS
Sbjct: 220 SS 221
Score = 74 (31.1 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 69 TLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-A 121
+L+V NL+ + + LR++F G V + I +S+ FA++ + +A A+ A
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 122 LNNMDVGGRPLNVEMAKSFPQKPSH 146
++ + GR L V+MA+ SH
Sbjct: 75 MDGAVLDGRELRVQMARYGRPPDSH 99
>UNIPROTKB|Q01130 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0016605 "PML body"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=NAS] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0003714
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 EMBL:CH471099 GO:GO:0006406
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006369 GO:GO:0031124
HOVERGEN:HBG107480 Reactome:REACT_78 eggNOG:NOG254270 KO:K12891
CTD:6427 OMA:DHRRRTR EMBL:M90104 EMBL:X62447 EMBL:X75755
EMBL:BT007250 EMBL:AK124792 EMBL:BC000339 EMBL:BC001303
EMBL:BC070086 EMBL:L03693 IPI:IPI00005978 RefSeq:NP_001182356.1
RefSeq:NP_003007.2 UniGene:Hs.584801 PDB:2KN4 PDB:2LEA PDB:2LEB
PDB:2LEC PDBsum:2KN4 PDBsum:2LEA PDBsum:2LEB PDBsum:2LEC
ProteinModelPortal:Q01130 SMR:Q01130 IntAct:Q01130
MINT:MINT-2863034 STRING:Q01130 PhosphoSite:Q01130 DMDM:60416437
PaxDb:Q01130 PeptideAtlas:Q01130 PRIDE:Q01130 DNASU:6427
Ensembl:ENST00000359995 Ensembl:ENST00000392485
Ensembl:ENST00000452355 Ensembl:ENST00000585202 GeneID:6427
KEGG:hsa:6427 UCSC:uc002jsv.3 GeneCards:GC17M074731 HGNC:HGNC:10783
MIM:600813 neXtProt:NX_Q01130 PharmGKB:PA35699 InParanoid:Q01130
ChiTaRS:SRSF2 EvolutionaryTrace:Q01130 GenomeRNAi:6427
NextBio:24961 ArrayExpress:Q01130 Bgee:Q01130 CleanEx:HS_SFRS2
Genevestigator:Q01130 GermOnline:ENSG00000161547 Uniprot:Q01130
Length = 221
Score = 79 (32.9 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 37/122 (30%), Positives = 51/122 (41%)
Query: 516 GKHHRGSRSPRGLDESRTKLGRRSRSKSIERKLYXXXXXXXXXXXXXXKSMLSPANLDRS 575
G + R SRSPR SR++ RSRS+S R Y KS + RS
Sbjct: 113 GGYGRRSRSPRRRRRSRSR--SRSRSRSRSRSRYSRS-----------KSRSRTRSRSRS 159
Query: 576 ESNRRRHSASQSKDHANSES-AETRDYKSMHHPHNWDKTEGELNASLKDPTVM-EDDGFL 633
S R S+SK + S S + +R P K E + + K P E++G +
Sbjct: 160 TSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPPPVSKRESKSRSRSKSPPKSPEEEGAV 219
Query: 634 SS 635
SS
Sbjct: 220 SS 221
Score = 74 (31.1 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 69 TLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-A 121
+L+V NL+ + + LR++F G V + I +S+ FA++ + +A A+ A
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 122 LNNMDVGGRPLNVEMAKSFPQKPSH 146
++ + GR L V+MA+ SH
Sbjct: 75 MDGAVLDGRELRVQMARYGRPPDSH 99
>UNIPROTKB|Q06A98 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427 EMBL:DQ972966
RefSeq:NP_001070697.1 UniGene:Ssc.1002 ProteinModelPortal:Q06A98
SMR:Q06A98 GeneID:768117 KEGG:ssc:768117 Uniprot:Q06A98
Length = 221
Score = 79 (32.9 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 31/106 (29%), Positives = 44/106 (41%)
Query: 516 GKHHRGSRSPRGLDESRTKLGRRSRSKSIER-KLYXXXXXXXXXXXXXXKSMLSPANLDR 574
G + R SRSPR SR++ RSRS+S R KS + + +
Sbjct: 113 GGYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSK 172
Query: 575 SESNRRRHSASQSKDHANSES-AETRDYKSMHHPHNWDKTEGELNA 619
S S R S S+S+ + S A R+ KS + K+ E A
Sbjct: 173 SSSVSRSRSRSRSRSRSRSPPPASKRESKSRSRSKSPPKSPEEEGA 218
Score = 74 (31.1 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 69 TLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-A 121
+L+V NL+ + + LR++F G V + I +S+ FA++ + +A A+ A
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 122 LNNMDVGGRPLNVEMAKSFPQKPSH 146
++ + GR L V+MA+ SH
Sbjct: 75 MDGAVLDGRELRVQMARYGRPPDSH 99
>MGI|MGI:98284 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=ISO;IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98284 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
HOVERGEN:HBG107480 UniGene:Mm.429312 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OMA:DHRRRTR
OrthoDB:EOG4D26RH ChiTaRS:SRSF2 EMBL:U14648 EMBL:AF077858
EMBL:AK086103 EMBL:AK088042 EMBL:AK165670 EMBL:BC005493 EMBL:X98511
IPI:IPI00121135 PIR:A55335 RefSeq:NP_035488.1 UniGene:Mm.21841
UniGene:Mm.469331 ProteinModelPortal:Q62093 SMR:Q62093
DIP:DIP-44831N IntAct:Q62093 STRING:Q62093 PhosphoSite:Q62093
PaxDb:Q62093 PRIDE:Q62093 Ensembl:ENSMUST00000092404
Ensembl:ENSMUST00000136914 GeneID:20382 KEGG:mmu:20382
NextBio:298298 Bgee:Q62093 CleanEx:MM_SFRS2 Genevestigator:Q62093
GermOnline:ENSMUSG00000034120 Uniprot:Q62093
Length = 221
Score = 79 (32.9 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 37/122 (30%), Positives = 51/122 (41%)
Query: 516 GKHHRGSRSPRGLDESRTKLGRRSRSKSIERKLYXXXXXXXXXXXXXXKSMLSPANLDRS 575
G + R SRSPR SR++ RSRS+S R Y KS + RS
Sbjct: 113 GGYGRRSRSPRRRRRSRSR--SRSRSRSRSRSRYSRS-----------KSRSRTRSRSRS 159
Query: 576 ESNRRRHSASQSKDHANSES-AETRDYKSMHHPHNWDKTEGELNASLKDPTVM-EDDGFL 633
S R S+SK + S S + +R P K E + + K P E++G +
Sbjct: 160 TSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPPPVSKRESKSRSRSKSPPKSPEEEGAV 219
Query: 634 SS 635
SS
Sbjct: 220 SS 221
Score = 74 (31.1 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 69 TLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-A 121
+L+V NL+ + + LR++F G V + I +S+ FA++ + +A A+ A
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 122 LNNMDVGGRPLNVEMAKSFPQKPSH 146
++ + GR L V+MA+ SH
Sbjct: 75 MDGAVLDGRELRVQMARYGRPPDSH 99
>RGD|1359422 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA;ISO] [GO:0016605 "PML body" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1359422 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427
OrthoDB:EOG4D26RH EMBL:BC058508 IPI:IPI00389420
RefSeq:NP_001009720.1 UniGene:Rn.136644 ProteinModelPortal:Q6PDU1
SMR:Q6PDU1 STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 79 (32.9 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 37/122 (30%), Positives = 51/122 (41%)
Query: 516 GKHHRGSRSPRGLDESRTKLGRRSRSKSIERKLYXXXXXXXXXXXXXXKSMLSPANLDRS 575
G + R SRSPR SR++ RSRS+S R Y KS + RS
Sbjct: 113 GGYGRRSRSPRRRRRSRSR--SRSRSRSRSRSRYSRS-----------KSRSRTRSRSRS 159
Query: 576 ESNRRRHSASQSKDHANSES-AETRDYKSMHHPHNWDKTEGELNASLKDPTVM-EDDGFL 633
S R S+SK + S S + +R P K E + + K P E++G +
Sbjct: 160 TSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPPPVSKRESKSRSRSKSPPKSPEEEGAV 219
Query: 634 SS 635
SS
Sbjct: 220 SS 221
Score = 74 (31.1 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 69 TLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-A 121
+L+V NL+ + + LR++F G V + I +S+ FA++ + +A A+ A
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 122 LNNMDVGGRPLNVEMAKSFPQKPSH 146
++ + GR L V+MA+ SH
Sbjct: 75 MDGAVLDGRELRVQMARYGRPPDSH 99
>UNIPROTKB|Q6PDU1 [details] [associations]
symbol:Srsf2 "Serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359422 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OrthoDB:EOG4D26RH
EMBL:BC058508 IPI:IPI00389420 RefSeq:NP_001009720.1
UniGene:Rn.136644 ProteinModelPortal:Q6PDU1 SMR:Q6PDU1
STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 79 (32.9 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 37/122 (30%), Positives = 51/122 (41%)
Query: 516 GKHHRGSRSPRGLDESRTKLGRRSRSKSIERKLYXXXXXXXXXXXXXXKSMLSPANLDRS 575
G + R SRSPR SR++ RSRS+S R Y KS + RS
Sbjct: 113 GGYGRRSRSPRRRRRSRSR--SRSRSRSRSRSRYSRS-----------KSRSRTRSRSRS 159
Query: 576 ESNRRRHSASQSKDHANSES-AETRDYKSMHHPHNWDKTEGELNASLKDPTVM-EDDGFL 633
S R S+SK + S S + +R P K E + + K P E++G +
Sbjct: 160 TSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPPPVSKRESKSRSRSKSPPKSPEEEGAV 219
Query: 634 SS 635
SS
Sbjct: 220 SS 221
Score = 74 (31.1 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 69 TLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-A 121
+L+V NL+ + + LR++F G V + I +S+ FA++ + +A A+ A
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 122 LNNMDVGGRPLNVEMAKSFPQKPSH 146
++ + GR L V+MA+ SH
Sbjct: 75 MDGAVLDGRELRVQMARYGRPPDSH 99
>RGD|1559953 [details] [associations]
symbol:Srsf11 "serine/arginine-rich splicing factor 11"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1559953 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473952 CTD:9295 HOGENOM:HOG000121772
HOVERGEN:HBG058422 KO:K12899 OrthoDB:EOG4J9N10 IPI:IPI00949618
EMBL:BC099157 RefSeq:NP_001030332.1 UniGene:Rn.11095 STRING:Q4KLK1
GeneID:502603 KEGG:rno:502603 eggNOG:NOG243664 InParanoid:Q4KLK1
NextBio:711976 Genevestigator:Q4KLK1 Uniprot:Q4KLK1
Length = 476
Score = 80 (33.2 bits), Expect = 0.00076, Sum P(3) = 0.00076
Identities = 22/76 (28%), Positives = 36/76 (47%)
Query: 57 PDKAGKADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTI---TD-----SKHFAYI 108
P +G + +QV+N+SP + EQ+R LF F G + E + D S ++
Sbjct: 15 PGPSGGPGGGTEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFPPDDSPLPVSSRVCFV 74
Query: 109 EYSKPEEATAALALNN 124
++ P+ A A L N
Sbjct: 75 KFHDPDSAVVAQHLTN 90
Score = 74 (31.1 bits), Expect = 0.00076, Sum P(3) = 0.00076
Identities = 42/147 (28%), Positives = 56/147 (38%)
Query: 537 RRSRSKSIERKLYXXXXXXXXXXXXXXKSMLSPAN-LDRSESNRRRHSASQSKDHANSES 595
RRSRS S ER+ K SP L RS S RR H + KD S
Sbjct: 327 RRSRSASRERR-----RRRSRSGTRSPKKPRSPKRKLSRSPSPRR-HKKEKKKDKDKERS 380
Query: 596 AETRDYKSMHHPHNWDKTEGELNASLKDPTVM--------EDDGFLSSKQKNYDLKKSME 647
+ R+ + + DK + S D V E+ G+ S K+K + K+ E
Sbjct: 381 RDERERSTSKKKRSKDKEKERERKSESDKDVKQVTRDYDEEEQGYDSEKEKKEE-KRPTE 439
Query: 648 NVS--AHE---NHGIKSTDPLMLNSDD 669
VS A E G+ +N DD
Sbjct: 440 AVSPKAKECSVEKGVGDLRESKVNGDD 466
Score = 47 (21.6 bits), Expect = 0.00076, Sum P(3) = 0.00076
Identities = 17/77 (22%), Positives = 29/77 (37%)
Query: 378 NSPRNDDAKPKYRHRSRSKSMERHDEEKDEARDGKSQHXXXXXXXXXXXXXXHHGRGRSP 437
+S ++A + R S ++K+E R + H R RS
Sbjct: 208 SSKEIEEAMKRVREAQSLISAAIEPDKKEEKR--RHSRSRSRSRRRRTPSSSRHRRSRSR 265
Query: 438 AGNVDENKSKLRGRSRS 454
+ +KS+ R RS+S
Sbjct: 266 SRRRSHSKSRSRRRSKS 282
>ZFIN|ZDB-GENE-030131-2420 [details] [associations]
symbol:srsf2b "serine/arginine-rich splicing
factor 2b" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2420
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 OrthoDB:EOG4D26RH EMBL:CU463857 EMBL:BC065971
IPI:IPI00484778 UniGene:Dr.77943 SMR:Q6NZT9 STRING:Q6NZT9
Ensembl:ENSDART00000017706 Ensembl:ENSDART00000105586
InParanoid:Q6NZT9 OMA:YVEMESA Uniprot:Q6NZT9
Length = 220
Score = 77 (32.2 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 31/87 (35%), Positives = 41/87 (47%)
Query: 520 RGSRSPRGLDESRTKLGRRSRSKSIERKLYXXXXXXXXXXXXXXKSMLSPANLDRSESNR 579
R SRSPR SR++ RSRS+S R Y KS +P N +S+S
Sbjct: 122 RRSRSPRRRRRSRSR--SRSRSRSRSRSRYSRSRSRSYSRSRS-KSH-TP-NKRKSKSPS 176
Query: 580 RRHSASQSKDHANSES---AETRDYKS 603
R S S+SK + S S A R+ +S
Sbjct: 177 RSRSRSRSKSRSRSRSRTPASNRESRS 203
Score = 75 (31.5 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 23/77 (29%), Positives = 42/77 (54%)
Query: 69 TLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-A 121
+L+V NL+ + E LR++F G V + I +S+ FA++ + +A A+ A
Sbjct: 15 SLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 122 LNNMDVGGRPLNVEMAK 138
++ + GR L V+MA+
Sbjct: 75 MDGAILDGRELRVQMAR 91
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.307 0.124 0.342 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 682 453 0.00093 118 3 11 23 0.38 35
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 37
No. of states in DFA: 603 (64 KB)
Total size of DFA: 241 KB (2129 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 34.30u 0.17s 34.47t Elapsed: 00:00:02
Total cpu time: 34.30u 0.17s 34.47t Elapsed: 00:00:02
Start: Thu May 9 21:28:22 2013 End: Thu May 9 21:28:24 2013