Query 005698
Match_columns 682
No_of_seqs 507 out of 2884
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 12:23:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005698.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005698hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0107 Alternative splicing f 99.7 6.7E-16 1.4E-20 147.0 15.4 78 65-142 8-87 (195)
2 KOG4207 Predicted splicing fac 99.6 7.3E-15 1.6E-19 143.0 17.4 77 66-142 12-95 (256)
3 PLN03134 glycine-rich RNA-bind 99.6 5.9E-15 1.3E-19 140.8 12.3 82 62-143 29-117 (144)
4 PLN03120 nucleic acid binding 99.6 2E-14 4.4E-19 147.2 16.6 134 67-202 4-140 (260)
5 KOG0125 Ataxin 2-binding prote 99.5 2.2E-14 4.7E-19 148.1 11.2 77 65-141 94-175 (376)
6 PLN03121 nucleic acid binding 99.5 1.1E-13 2.4E-18 139.8 15.7 145 66-210 4-164 (243)
7 KOG0113 U1 small nuclear ribon 99.5 8.7E-13 1.9E-17 135.0 20.4 79 63-141 97-182 (335)
8 PF00076 RRM_1: RNA recognitio 99.5 1.2E-13 2.6E-18 113.5 8.1 64 70-133 1-70 (70)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 1.6E-13 3.4E-18 148.6 11.1 76 66-141 268-350 (352)
10 TIGR01659 sex-lethal sex-letha 99.5 2.8E-13 6E-18 146.8 11.6 99 62-162 102-207 (346)
11 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 4.2E-13 9.1E-18 145.2 11.7 95 66-162 2-103 (352)
12 KOG0121 Nuclear cap-binding pr 99.4 6.7E-13 1.5E-17 120.6 6.9 75 66-140 35-116 (153)
13 KOG0148 Apoptosis-promoting RN 99.4 1.6E-12 3.5E-17 131.4 9.6 82 61-142 158-240 (321)
14 PLN03213 repressor of silencin 99.4 1.8E-12 3.9E-17 139.4 9.7 76 64-139 7-87 (759)
15 TIGR01645 half-pint poly-U bin 99.4 3.1E-12 6.7E-17 146.2 12.0 74 65-138 105-185 (612)
16 KOG4676 Splicing factor, argin 99.4 6E-12 1.3E-16 132.5 13.0 72 67-138 7-87 (479)
17 KOG0105 Alternative splicing f 99.3 1.3E-12 2.9E-17 125.4 6.6 75 66-140 5-83 (241)
18 TIGR01645 half-pint poly-U bin 99.3 8.8E-12 1.9E-16 142.5 13.9 75 67-141 204-285 (612)
19 PF14259 RRM_6: RNA recognitio 99.3 5.9E-12 1.3E-16 104.3 8.0 64 70-133 1-70 (70)
20 TIGR01659 sex-lethal sex-letha 99.3 7.7E-12 1.7E-16 135.6 10.4 77 65-141 191-276 (346)
21 smart00362 RRM_2 RNA recogniti 99.3 1.3E-11 2.7E-16 100.2 9.1 66 69-134 1-71 (72)
22 KOG0114 Predicted RNA-binding 99.3 9.6E-12 2.1E-16 109.3 8.4 75 65-139 16-94 (124)
23 TIGR01622 SF-CC1 splicing fact 99.3 9.6E-12 2.1E-16 139.7 10.3 73 67-139 186-265 (457)
24 KOG0122 Translation initiation 99.3 9.1E-12 2E-16 124.6 8.9 75 66-140 188-269 (270)
25 TIGR01642 U2AF_lg U2 snRNP aux 99.3 2.2E-11 4.8E-16 138.5 12.1 75 66-140 294-375 (509)
26 KOG0109 RNA-binding protein LA 99.3 6.7E-12 1.5E-16 128.0 6.9 74 68-143 3-77 (346)
27 TIGR01628 PABP-1234 polyadenyl 99.3 2.2E-11 4.7E-16 140.5 11.4 94 69-162 2-102 (562)
28 TIGR01622 SF-CC1 splicing fact 99.2 2E-11 4.4E-16 137.0 10.7 77 63-139 85-167 (457)
29 KOG0149 Predicted RNA-binding 99.2 1E-11 2.2E-16 123.8 6.9 77 63-139 8-90 (247)
30 KOG0126 Predicted RNA-binding 99.2 1.2E-12 2.6E-17 125.6 0.2 76 65-140 33-115 (219)
31 TIGR01648 hnRNP-R-Q heterogene 99.2 2.3E-11 4.9E-16 138.9 10.5 73 67-141 233-308 (578)
32 KOG0111 Cyclophilin-type pepti 99.2 7.6E-12 1.6E-16 123.0 4.6 80 65-144 8-94 (298)
33 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 3.5E-11 7.6E-16 136.4 10.5 74 67-140 2-78 (481)
34 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 4.3E-11 9.3E-16 135.7 11.2 77 64-140 272-351 (481)
35 KOG0415 Predicted peptidyl pro 99.2 4.2E-11 9.2E-16 124.7 10.1 80 62-141 234-320 (479)
36 KOG0131 Splicing factor 3b, su 99.2 3.1E-11 6.7E-16 116.1 8.1 74 65-138 7-87 (203)
37 TIGR01642 U2AF_lg U2 snRNP aux 99.2 5.7E-11 1.2E-15 135.1 11.7 78 61-138 169-258 (509)
38 KOG0130 RNA-binding protein RB 99.2 2.4E-11 5.2E-16 111.5 6.3 77 65-141 70-153 (170)
39 cd00590 RRM RRM (RNA recogniti 99.2 1.1E-10 2.3E-15 95.1 9.2 68 69-136 1-74 (74)
40 TIGR01628 PABP-1234 polyadenyl 99.2 6.5E-11 1.4E-15 136.6 10.7 75 65-139 283-363 (562)
41 KOG0147 Transcriptional coacti 99.2 1.1E-11 2.4E-16 135.9 3.9 71 70-140 281-358 (549)
42 TIGR01648 hnRNP-R-Q heterogene 99.2 8.4E-11 1.8E-15 134.3 11.2 75 64-138 55-136 (578)
43 KOG0145 RNA-binding protein EL 99.2 1.3E-10 2.7E-15 117.0 10.6 103 63-167 37-146 (360)
44 COG0724 RNA-binding proteins ( 99.2 9.5E-11 2E-15 118.8 9.8 72 67-138 115-193 (306)
45 smart00360 RRM RNA recognition 99.1 1.4E-10 3E-15 93.5 7.8 63 72-134 1-70 (71)
46 PF13893 RRM_5: RNA recognitio 99.1 2E-10 4.3E-15 91.4 8.2 54 84-137 1-56 (56)
47 KOG0117 Heterogeneous nuclear 99.1 1.5E-10 3.3E-15 124.0 7.6 74 67-142 259-333 (506)
48 KOG0109 RNA-binding protein LA 99.1 1.4E-10 3.1E-15 118.4 5.9 79 64-144 75-154 (346)
49 KOG0148 Apoptosis-promoting RN 99.1 1.9E-10 4.2E-15 116.5 6.6 75 67-141 62-143 (321)
50 KOG0117 Heterogeneous nuclear 99.1 5.8E-10 1.3E-14 119.7 10.0 77 62-138 78-162 (506)
51 KOG0153 Predicted RNA-binding 99.0 5.1E-10 1.1E-14 117.0 8.8 80 60-139 221-302 (377)
52 KOG0127 Nucleolar protein fibr 99.0 6E-10 1.3E-14 121.9 9.0 82 64-145 114-201 (678)
53 KOG0144 RNA-binding protein CU 99.0 7.4E-10 1.6E-14 118.4 9.2 79 66-144 123-210 (510)
54 KOG0108 mRNA cleavage and poly 99.0 6.2E-10 1.3E-14 122.9 7.8 73 68-140 19-98 (435)
55 KOG0145 RNA-binding protein EL 99.0 1.4E-09 3E-14 109.6 9.1 74 66-139 277-357 (360)
56 KOG0132 RNA polymerase II C-te 99.0 9.8E-10 2.1E-14 124.4 7.8 78 67-144 421-499 (894)
57 KOG0106 Alternative splicing f 99.0 1.2E-09 2.7E-14 109.6 7.6 70 68-139 2-72 (216)
58 KOG0146 RNA-binding protein ET 99.0 1.2E-09 2.6E-14 110.4 7.4 81 61-141 279-366 (371)
59 KOG0127 Nucleolar protein fibr 98.9 2.2E-09 4.7E-14 117.6 9.3 76 64-139 289-377 (678)
60 KOG4676 Splicing factor, argin 98.9 2.7E-09 5.8E-14 112.9 9.2 74 61-134 46-124 (479)
61 KOG0146 RNA-binding protein ET 98.9 6E-09 1.3E-13 105.4 11.2 77 66-142 18-103 (371)
62 KOG4212 RNA-binding protein hn 98.9 3E-09 6.5E-14 113.6 8.0 72 67-138 44-122 (608)
63 KOG0124 Polypyrimidine tract-b 98.8 5.7E-09 1.2E-13 109.3 8.1 70 66-135 112-188 (544)
64 KOG4206 Spliceosomal protein s 98.8 6.8E-09 1.5E-13 103.6 8.2 74 67-140 9-90 (221)
65 KOG0110 RNA-binding protein (R 98.8 1.4E-08 3E-13 114.6 9.8 71 68-138 516-596 (725)
66 KOG0124 Polypyrimidine tract-b 98.8 3E-09 6.6E-14 111.3 3.7 75 65-139 208-289 (544)
67 smart00361 RRM_1 RNA recogniti 98.8 1.7E-08 3.8E-13 84.2 7.2 54 81-134 2-69 (70)
68 KOG4661 Hsp27-ERE-TATA-binding 98.8 1.2E-08 2.7E-13 111.7 7.6 76 65-140 403-485 (940)
69 KOG0151 Predicted splicing reg 98.7 2.2E-08 4.8E-13 112.5 8.9 85 55-139 162-256 (877)
70 KOG4212 RNA-binding protein hn 98.7 2.1E-08 4.5E-13 107.4 7.9 76 62-137 531-608 (608)
71 KOG0110 RNA-binding protein (R 98.7 4.1E-09 8.9E-14 118.8 2.4 76 65-140 611-693 (725)
72 KOG0123 Polyadenylate-binding 98.7 3.4E-08 7.4E-13 108.0 7.9 73 69-142 78-155 (369)
73 KOG0144 RNA-binding protein CU 98.7 6.2E-08 1.3E-12 103.9 9.2 80 61-140 418-504 (510)
74 KOG4208 Nucleolar RNA-binding 98.7 5.4E-08 1.2E-12 95.9 7.7 79 62-140 44-130 (214)
75 KOG0131 Splicing factor 3b, su 98.5 1.1E-07 2.4E-12 91.9 6.3 81 64-144 93-181 (203)
76 KOG0533 RRM motif-containing p 98.5 3.3E-07 7.1E-12 94.2 8.4 78 63-140 79-162 (243)
77 KOG0116 RasGAP SH3 binding pro 98.5 1.9E-07 4E-12 102.9 6.9 74 67-140 288-367 (419)
78 KOG4454 RNA binding protein (R 98.5 6.4E-08 1.4E-12 95.8 2.1 75 65-139 7-86 (267)
79 KOG4209 Splicing factor RNPS1, 98.4 4.3E-07 9.3E-12 93.2 8.0 80 61-140 95-180 (231)
80 KOG4660 Protein Mei2, essentia 98.4 2.2E-07 4.7E-12 102.9 5.9 79 55-133 63-143 (549)
81 KOG1548 Transcription elongati 98.4 4.5E-07 9.8E-12 95.2 7.9 77 64-140 131-221 (382)
82 KOG1457 RNA binding protein (c 98.4 1E-06 2.2E-11 87.6 9.7 78 64-141 31-119 (284)
83 KOG0123 Polyadenylate-binding 98.4 4.5E-07 9.8E-12 99.3 7.9 71 68-141 2-76 (369)
84 KOG4205 RNA-binding protein mu 98.4 3.2E-07 6.8E-12 97.7 5.2 77 66-142 5-87 (311)
85 KOG4205 RNA-binding protein mu 98.4 3.8E-07 8.2E-12 97.1 5.4 78 66-143 96-179 (311)
86 KOG1190 Polypyrimidine tract-b 98.2 6.3E-06 1.4E-10 88.3 9.7 74 67-140 297-373 (492)
87 KOG1457 RNA binding protein (c 98.1 1.8E-06 4E-11 85.8 4.2 63 66-128 209-274 (284)
88 PF08777 RRM_3: RNA binding mo 98.0 2E-05 4.3E-10 71.4 7.7 68 68-135 2-75 (105)
89 KOG0106 Alternative splicing f 98.0 3.7E-06 7.9E-11 84.8 2.9 68 65-134 97-165 (216)
90 PF11608 Limkain-b1: Limkain b 97.9 3.7E-05 8.1E-10 65.9 7.8 68 68-139 3-76 (90)
91 KOG0120 Splicing factor U2AF, 97.8 1.7E-05 3.6E-10 88.9 4.9 79 65-143 287-372 (500)
92 PF04059 RRM_2: RNA recognitio 97.8 0.00011 2.4E-09 65.5 8.6 72 68-139 2-86 (97)
93 KOG4211 Splicing factor hnRNP- 97.8 6.9E-05 1.5E-09 82.4 8.7 74 66-140 9-86 (510)
94 KOG0147 Transcriptional coacti 97.8 9.5E-06 2.1E-10 90.0 2.0 77 62-138 174-256 (549)
95 KOG4206 Spliceosomal protein s 97.7 0.0001 2.2E-09 74.1 7.7 75 64-138 143-220 (221)
96 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00011 2.3E-09 58.3 5.6 52 68-120 2-53 (53)
97 COG5175 MOT2 Transcriptional r 97.6 9.3E-05 2E-09 77.7 6.2 76 64-139 111-202 (480)
98 KOG0226 RNA-binding proteins [ 97.6 6.4E-05 1.4E-09 76.5 4.7 76 63-138 186-268 (290)
99 KOG1995 Conserved Zn-finger pr 97.6 6.2E-05 1.3E-09 80.1 4.6 78 64-141 63-155 (351)
100 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00035 7.5E-09 62.7 8.3 71 67-138 6-90 (100)
101 KOG3152 TBP-binding protein, a 97.5 0.00051 1.1E-08 70.2 9.0 65 67-131 74-157 (278)
102 KOG2416 Acinus (induces apopto 97.4 9.2E-05 2E-09 82.7 3.3 75 65-139 442-521 (718)
103 KOG4211 Splicing factor hnRNP- 97.4 0.00028 6E-09 77.8 6.4 74 65-138 101-180 (510)
104 KOG0112 Large RNA-binding prot 97.3 0.00016 3.5E-09 84.3 4.4 82 63-144 451-535 (975)
105 KOG1456 Heterogeneous nuclear 97.3 0.00095 2E-08 71.2 9.0 76 64-139 284-362 (494)
106 KOG1548 Transcription elongati 97.3 0.001 2.2E-08 70.6 9.1 77 64-140 262-352 (382)
107 KOG0105 Alternative splicing f 97.3 0.00077 1.7E-08 65.8 7.6 62 67-129 115-177 (241)
108 KOG1855 Predicted RNA-binding 97.2 0.00024 5.3E-09 76.9 4.1 64 62-125 226-308 (484)
109 KOG2193 IGF-II mRNA-binding pr 97.2 0.00053 1.1E-08 74.1 6.2 74 68-143 2-79 (584)
110 KOG4210 Nuclear localization s 97.2 0.00027 5.9E-09 75.0 3.7 77 66-142 183-266 (285)
111 KOG1190 Polypyrimidine tract-b 97.1 0.00089 1.9E-08 72.2 6.8 75 65-139 412-490 (492)
112 PF08952 DUF1866: Domain of un 97.1 0.0024 5.2E-08 60.8 8.4 57 82-140 51-107 (146)
113 KOG2202 U2 snRNP splicing fact 96.9 0.00036 7.8E-09 71.4 1.7 63 82-144 83-152 (260)
114 KOG1456 Heterogeneous nuclear 96.8 0.0039 8.4E-08 66.7 8.4 76 65-140 118-199 (494)
115 KOG0112 Large RNA-binding prot 96.8 0.00013 2.7E-09 85.2 -3.0 76 63-138 368-449 (975)
116 KOG2314 Translation initiation 96.8 0.0039 8.5E-08 69.8 8.0 73 64-136 55-140 (698)
117 KOG0120 Splicing factor U2AF, 96.6 0.0038 8.2E-08 70.4 7.2 57 83-139 425-491 (500)
118 KOG0129 Predicted RNA-binding 96.6 0.0051 1.1E-07 68.5 7.5 59 62-120 365-430 (520)
119 KOG4307 RNA binding protein RB 96.5 0.005 1.1E-07 70.3 7.2 70 67-136 867-943 (944)
120 KOG0129 Predicted RNA-binding 96.5 0.0052 1.1E-07 68.4 6.7 58 62-120 254-323 (520)
121 KOG1996 mRNA splicing factor [ 96.4 0.0058 1.3E-07 63.6 6.2 57 82-138 301-365 (378)
122 KOG1365 RNA-binding protein Fu 96.4 0.0049 1.1E-07 66.2 5.5 75 64-138 277-360 (508)
123 KOG2135 Proteins containing th 96.2 0.0028 6.1E-08 69.7 2.5 75 67-141 372-447 (526)
124 KOG4285 Mitotic phosphoprotein 95.8 0.032 7E-07 58.5 8.1 71 67-138 197-268 (350)
125 KOG4849 mRNA cleavage factor I 95.8 0.01 2.2E-07 63.0 4.5 69 67-135 80-157 (498)
126 PF15023 DUF4523: Protein of u 95.7 0.039 8.4E-07 52.2 7.5 74 63-138 82-160 (166)
127 KOG0128 RNA-binding protein SA 95.6 0.0021 4.5E-08 75.1 -1.7 76 67-142 736-817 (881)
128 KOG2253 U1 snRNP complex, subu 95.4 0.012 2.5E-07 67.4 3.4 70 65-137 38-108 (668)
129 KOG4574 RNA-binding protein (c 94.9 0.0077 1.7E-07 70.3 0.3 81 68-148 299-382 (1007)
130 KOG0128 RNA-binding protein SA 94.9 0.0022 4.8E-08 74.9 -4.1 63 68-130 668-736 (881)
131 KOG2068 MOT2 transcription fac 94.9 0.0094 2E-07 63.5 0.8 74 67-140 77-163 (327)
132 PF03467 Smg4_UPF3: Smg-4/UPF3 94.7 0.044 9.5E-07 54.3 5.1 74 66-139 6-97 (176)
133 KOG2591 c-Mpl binding protein, 94.6 0.024 5.3E-07 63.6 3.3 68 67-135 175-247 (684)
134 PF10309 DUF2414: Protein of u 94.6 0.15 3.2E-06 41.8 6.9 54 67-122 5-62 (62)
135 PF04847 Calcipressin: Calcipr 94.2 0.098 2.1E-06 52.2 6.2 62 80-141 8-72 (184)
136 PF03880 DbpA: DbpA RNA bindin 94.1 0.2 4.3E-06 42.4 7.0 66 69-137 2-74 (74)
137 KOG4307 RNA binding protein RB 94.0 0.029 6.2E-07 64.4 2.3 70 66-135 433-509 (944)
138 KOG1365 RNA-binding protein Fu 93.9 0.043 9.2E-07 59.2 3.2 66 69-134 163-237 (508)
139 KOG0115 RNA-binding protein p5 93.3 0.08 1.7E-06 54.6 3.8 70 68-137 32-111 (275)
140 PF08675 RNA_bind: RNA binding 93.2 0.34 7.5E-06 42.0 6.9 54 67-123 9-63 (87)
141 KOG4019 Calcineurin-mediated s 90.6 0.22 4.7E-06 49.0 3.1 76 65-140 8-90 (193)
142 KOG4210 Nuclear localization s 90.3 0.16 3.6E-06 54.1 2.2 75 66-140 87-168 (285)
143 PF07576 BRAP2: BRCA1-associat 89.7 1.8 4E-05 39.6 8.2 63 67-129 13-81 (110)
144 KOG2318 Uncharacterized conser 89.2 1.3 2.9E-05 50.5 8.3 75 64-138 171-306 (650)
145 KOG4368 Predicted RNA binding 88.4 0.81 1.8E-05 52.1 5.8 10 7-16 28-37 (757)
146 KOG4660 Protein Mei2, essentia 86.2 0.86 1.9E-05 51.8 4.6 72 67-138 388-471 (549)
147 KOG0804 Cytoplasmic Zn-finger 86.1 3.2 7E-05 46.2 8.7 64 66-129 73-142 (493)
148 KOG2193 IGF-II mRNA-binding pr 85.9 0.036 7.9E-07 60.3 -6.0 72 67-138 80-155 (584)
149 KOG2146 Splicing coactivator S 83.5 36 0.00078 36.1 14.4 12 125-136 76-87 (354)
150 KOG2891 Surface glycoprotein [ 81.4 0.66 1.4E-05 48.3 1.1 62 66-127 148-247 (445)
151 KOG4410 5-formyltetrahydrofola 80.0 4 8.6E-05 42.9 6.1 50 65-114 328-378 (396)
152 KOG2548 SWAP mRNA splicing reg 75.8 1.3 2.7E-05 50.0 1.2 6 105-110 160-165 (653)
153 PHA00380 tail protein 75.4 6.4 0.00014 44.4 6.4 31 82-112 524-558 (599)
154 KOG4454 RNA binding protein (R 74.3 0.95 2.1E-05 45.9 -0.2 71 64-134 77-157 (267)
155 PF11767 SET_assoc: Histone ly 73.6 13 0.00028 31.0 6.3 54 78-134 11-65 (66)
156 KOG0835 Cyclin L [General func 72.5 16 0.00035 39.5 8.3 15 86-100 127-141 (367)
157 KOG4483 Uncharacterized conser 70.1 10 0.00022 41.8 6.3 60 62-122 386-446 (528)
158 PF03468 XS: XS domain; Inter 66.6 7 0.00015 36.2 3.7 56 69-124 10-78 (116)
159 PF10567 Nab6_mRNP_bdg: RNA-re 59.0 15 0.00033 39.0 5.0 76 63-138 11-106 (309)
160 KOG1295 Nonsense-mediated deca 58.7 11 0.00023 41.5 4.0 64 66-129 6-79 (376)
161 PF15513 DUF4651: Domain of un 57.9 16 0.00034 30.1 3.8 19 82-100 9-27 (62)
162 KOG4008 rRNA processing protei 56.5 13 0.00028 38.3 3.9 38 63-100 36-73 (261)
163 KOG0151 Predicted splicing reg 54.9 39 0.00085 40.0 7.8 11 106-116 695-705 (877)
164 KOG2295 C2H2 Zn-finger protein 50.0 3 6.6E-05 47.5 -1.9 64 67-130 231-301 (648)
165 COG5638 Uncharacterized conser 49.8 76 0.0017 35.3 8.5 36 65-100 144-184 (622)
166 PF00403 HMA: Heavy-metal-asso 49.4 82 0.0018 24.8 6.9 56 69-124 1-60 (62)
167 KOG2888 Putative RNA binding p 45.9 11 0.00023 40.6 1.5 12 444-455 405-416 (453)
168 COG0724 RNA-binding proteins ( 45.1 24 0.00052 35.1 3.9 38 63-100 221-258 (306)
169 KOG0835 Cyclin L [General func 38.6 41 0.00089 36.5 4.4 18 105-122 175-192 (367)
170 KOG1847 mRNA splicing factor [ 38.6 21 0.00044 41.7 2.3 10 330-339 780-789 (878)
171 cd04908 ACT_Bt0572_1 N-termina 37.7 2.1E+02 0.0046 22.9 8.3 47 81-127 15-64 (66)
172 PF14893 PNMA: PNMA 37.5 39 0.00085 36.9 4.2 48 66-113 17-72 (331)
173 KOG1847 mRNA splicing factor [ 37.4 22 0.00048 41.4 2.3 45 69-113 175-228 (878)
174 KOG2888 Putative RNA binding p 35.9 16 0.00035 39.3 0.9 12 527-538 421-432 (453)
175 PF08544 GHMP_kinases_C: GHMP 35.8 1E+02 0.0022 25.7 5.7 40 82-122 37-79 (85)
176 KOG4207 Predicted splicing fac 34.8 5.3E+02 0.011 26.6 11.3 17 108-124 21-38 (256)
177 KOG4365 Uncharacterized conser 34.0 7.2 0.00016 43.4 -2.1 71 67-138 3-80 (572)
178 PTZ00481 Membrane attack compl 33.3 82 0.0018 35.5 5.8 58 72-129 210-283 (524)
179 KOG0156 Cytochrome P450 CYP2 s 32.9 68 0.0015 37.0 5.4 59 71-132 36-97 (489)
180 PF14026 DUF4242: Protein of u 30.6 3.1E+02 0.0067 23.4 7.8 60 69-128 2-72 (77)
181 PLN02971 tryptophan N-hydroxyl 29.6 4.4E+02 0.0096 30.4 11.5 61 69-132 65-130 (543)
182 COG0150 PurM Phosphoribosylami 28.9 20 0.00043 39.1 0.3 45 81-125 275-322 (345)
183 COG2608 CopZ Copper chaperone 28.2 2.9E+02 0.0063 22.9 7.1 59 67-125 3-65 (71)
184 PF09707 Cas_Cas2CT1978: CRISP 25.7 1.1E+02 0.0025 26.8 4.3 47 66-112 24-73 (86)
185 TIGR01873 cas_CT1978 CRISPR-as 25.1 86 0.0019 27.6 3.4 47 66-112 24-74 (87)
186 CHL00123 rps6 ribosomal protei 24.9 1.3E+02 0.0027 26.9 4.6 51 68-120 9-79 (97)
187 PRK14548 50S ribosomal protein 24.5 1.8E+02 0.0039 25.4 5.3 51 70-120 23-78 (84)
188 KOG4213 RNA-binding protein La 23.8 62 0.0014 32.2 2.5 67 62-133 106-180 (205)
189 PF14111 DUF4283: Domain of un 22.9 41 0.00089 31.6 1.2 68 69-138 17-90 (153)
190 TIGR03636 L23_arch archaeal ri 22.6 2.2E+02 0.0047 24.5 5.3 51 69-119 15-70 (77)
191 PF00398 RrnaAD: Ribosomal RNA 22.2 1.1E+02 0.0023 32.1 4.2 34 66-99 96-131 (262)
192 COG4874 Uncharacterized protei 21.4 99 0.0021 32.3 3.5 54 65-119 156-226 (318)
193 KOG4840 Predicted hydrolases o 21.2 2.7E+02 0.0059 29.1 6.5 69 67-135 37-113 (299)
194 PF04127 DFP: DNA / pantothena 20.8 1.7E+02 0.0037 29.2 5.1 53 68-120 19-76 (185)
No 1
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=6.7e-16 Score=147.04 Aligned_cols=78 Identities=26% Similarity=0.448 Sum_probs=72.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe-cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecccCCC
Q 005698 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT-DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKSFPQ 142 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~-~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~~~~ 142 (682)
...+.||||||+..+++.||+.+|..||.|..|+|. .+.|||||+|++..+|+.|+ .|||..|+|..|.|+++.....
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 347899999999999999999999999999999997 67899999999999999999 8999999999999999986544
No 2
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.64 E-value=7.3e-15 Score=143.04 Aligned_cols=77 Identities=30% Similarity=0.452 Sum_probs=72.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecc
Q 005698 66 LKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAK 138 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~ 138 (682)
...+|.|-||.+.++.++|..+|++||.|.+|.|. +.+|||||-|.+..+|+.|| +|+|.+|+|+.|.|++|.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 46799999999999999999999999999999997 58999999999999999999 899999999999999998
Q ss_pred cCCC
Q 005698 139 SFPQ 142 (682)
Q Consensus 139 ~~~~ 142 (682)
....
T Consensus 92 ygr~ 95 (256)
T KOG4207|consen 92 YGRP 95 (256)
T ss_pred cCCC
Confidence 6543
No 3
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.60 E-value=5.9e-15 Score=140.76 Aligned_cols=82 Identities=24% Similarity=0.419 Sum_probs=73.8
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEE
Q 005698 62 KADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNV 134 (682)
Q Consensus 62 ~~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V 134 (682)
..-...++|||+|||+.+||++|+++|.+||.|..|.|+ ..+|||||+|.+.++|+.|| .|||+.|+|+.|.|
T Consensus 29 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V 108 (144)
T PLN03134 29 SLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRV 108 (144)
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 334567899999999999999999999999999999997 36899999999999999999 79999999999999
Q ss_pred EecccCCCC
Q 005698 135 EMAKSFPQK 143 (682)
Q Consensus 135 ~~a~~~~~~ 143 (682)
.|+......
T Consensus 109 ~~a~~~~~~ 117 (144)
T PLN03134 109 NPANDRPSA 117 (144)
T ss_pred EeCCcCCCC
Confidence 999865443
No 4
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.60 E-value=2e-14 Score=147.21 Aligned_cols=134 Identities=19% Similarity=0.361 Sum_probs=98.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe---cCCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEecccCCCC
Q 005698 67 KKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT---DSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEMAKSFPQK 143 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~---~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~a~~~~~~ 143 (682)
.++|||+||++.+|+++|++||+.||.|..|.|+ ...|||||+|.+.++|+.||.|||..|.|+.|.|.++......
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~~~p 83 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDYQLP 83 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCCCCC
Confidence 5799999999999999999999999999999997 3579999999999999999999999999999999998755433
Q ss_pred CCCCCCCccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 005698 144 PSHLNSSLAGSSLPMMMQQAVAMQQMQFQQALLMQQTLTAQQAANRAASMKSATELAAA 202 (682)
Q Consensus 144 ~~~~~~~~~~~~~P~~~~~~~~~qq~~~~q~~~~q~~~~~qq~a~~aa~~~~a~~~Aaa 202 (682)
+..+.........+ .......+.+.....++..+.++.+.+++.|..+..--+..+.
T Consensus 84 ~~~~~~~~~~~~~~--~~~~~~~~a~~vva~mLAkGy~l~~dA~~kAk~fDekH~~ss~ 140 (260)
T PLN03120 84 PEALAPLSSNSPAS--GAESAVKKAEDVVSSMLAKGFILGKDAVNKAKAFDEKHQLTST 140 (260)
T ss_pred cccccccccccCCC--CccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhchHHH
Confidence 22111100000000 0001112234566777888888888888888877665444433
No 5
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=2.2e-14 Score=148.08 Aligned_cols=77 Identities=30% Similarity=0.420 Sum_probs=72.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe----cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEeccc
Q 005698 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT----DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKS 139 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~----~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~ 139 (682)
...+.|||.|||+.+.+.||..+|.+||.|.+|.|+ .+||||||+|++.++|+.|- +|||++|.|++|.|..|..
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 446899999999999999999999999999999998 68999999999999999999 8999999999999999886
Q ss_pred CC
Q 005698 140 FP 141 (682)
Q Consensus 140 ~~ 141 (682)
..
T Consensus 174 rV 175 (376)
T KOG0125|consen 174 RV 175 (376)
T ss_pred hh
Confidence 53
No 6
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.54 E-value=1.1e-13 Score=139.84 Aligned_cols=145 Identities=19% Similarity=0.259 Sum_probs=99.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe---cCCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEecccCCC
Q 005698 66 LKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT---DSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEMAKSFPQ 142 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~---~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~a~~~~~ 142 (682)
...+|||+||++.+|+++|++||+.||+|.+|.|+ ...+||||+|.+.++|+.||.|||..|.|..|.|..+.....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~y~~ 83 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQYED 83 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCccccc
Confidence 35799999999999999999999999999999998 356899999999999999999999999999999987664333
Q ss_pred CCCCCCCCcc-C-------Cch-hhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH---HHHHHHHHHHh
Q 005698 143 KPSHLNSSLA-G-------SSL-PMM-MQQAVAMQQMQFQQALLMQQTLTAQQAANRAASMKSATE---LAAARAAEISK 209 (682)
Q Consensus 143 ~~~~~~~~~~-~-------~~~-P~~-~~~~~~~qq~~~~q~~~~q~~~~~qq~a~~aa~~~~a~~---~Aaa~aa~~a~ 209 (682)
.+..+..... . ... ... .........+.....++..+.++.+.+++.|.++..--+ .|++..+++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~aq~Vv~tmLAkGyvLgkda~~KAkafDE~h~lss~a~a~v~~~d~ 163 (243)
T PLN03121 84 EFDFWNRPSWDTEDISTHNYETNQFASTPGEAVTVAQEVVKTMLAKGYVLGKDALSKAKAFDESHQVSATAAAKVAELSK 163 (243)
T ss_pred CcccccCccccccccccccccccccCCCchhhHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCccHhhhhhhhhhhh
Confidence 2221111100 0 000 000 000111122345667777788888888888877765433 33444444443
Q ss_pred h
Q 005698 210 K 210 (682)
Q Consensus 210 k 210 (682)
.
T Consensus 164 ~ 164 (243)
T PLN03121 164 R 164 (243)
T ss_pred h
Confidence 3
No 7
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=8.7e-13 Score=134.95 Aligned_cols=79 Identities=25% Similarity=0.383 Sum_probs=72.9
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEE
Q 005698 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVE 135 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~ 135 (682)
...+-+||||+-|+++++|..|+..|..||.|..|.|+ .++|||||+|.+.-++..|. +.+|..|+|+.|.|.
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 44678999999999999999999999999999999997 58999999999999999999 899999999999999
Q ss_pred ecccCC
Q 005698 136 MAKSFP 141 (682)
Q Consensus 136 ~a~~~~ 141 (682)
+-....
T Consensus 177 vERgRT 182 (335)
T KOG0113|consen 177 VERGRT 182 (335)
T ss_pred eccccc
Confidence 876543
No 8
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.47 E-value=1.2e-13 Score=113.47 Aligned_cols=64 Identities=38% Similarity=0.624 Sum_probs=60.4
Q ss_pred EEEeCCCCCCCHHHHHHHHhcCCCeEEEEEec-----CCCeEEEEeCCHHHHHHHH-HcCCceecCceEE
Q 005698 70 LQVSNLSPLLTVEQLRQLFSFCGTVVECTITD-----SKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLN 133 (682)
Q Consensus 70 L~V~NLp~~vteedL~~~F~~~G~V~~v~i~~-----~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~ 133 (682)
|||+|||+.+|+++|.++|.+||.|..|.|.. ..+||||+|.+.++|+.|| .|||..|.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 89999999999999999999999999999873 5799999999999999999 7999999999885
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.47 E-value=1.6e-13 Score=148.55 Aligned_cols=76 Identities=29% Similarity=0.391 Sum_probs=70.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecc
Q 005698 66 LKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAK 138 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~ 138 (682)
...+|||+|||+.+++++|.++|.+||.|+.|.|+ .++|||||+|.+.++|..|| .|||..|+|+.|.|.|+.
T Consensus 268 ~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 268 AGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKT 347 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence 34579999999999999999999999999999997 36899999999999999999 899999999999999987
Q ss_pred cCC
Q 005698 139 SFP 141 (682)
Q Consensus 139 ~~~ 141 (682)
.+.
T Consensus 348 ~~~ 350 (352)
T TIGR01661 348 NKA 350 (352)
T ss_pred CCC
Confidence 654
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.46 E-value=2.8e-13 Score=146.77 Aligned_cols=99 Identities=22% Similarity=0.357 Sum_probs=81.8
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEE
Q 005698 62 KADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNV 134 (682)
Q Consensus 62 ~~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V 134 (682)
......++|||+|||+++|+++|++||..||.|+.|.|+ ..+|||||+|.+.++|+.|| .|||++|.++.|.|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 345567899999999999999999999999999999996 35699999999999999999 89999999999999
Q ss_pred EecccCCCCCCCCCCCccCCchhhhhHH
Q 005698 135 EMAKSFPQKPSHLNSSLAGSSLPMMMQQ 162 (682)
Q Consensus 135 ~~a~~~~~~~~~~~~~~~~~~~P~~~~~ 162 (682)
.|+.+..... ....+.+.+||..+..
T Consensus 182 ~~a~p~~~~~--~~~~lfV~nLp~~vte 207 (346)
T TIGR01659 182 SYARPGGESI--KDTNLYVTNLPRTITD 207 (346)
T ss_pred eccccccccc--ccceeEEeCCCCcccH
Confidence 9987543221 2334566677665443
No 11
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.44 E-value=4.2e-13 Score=145.24 Aligned_cols=95 Identities=28% Similarity=0.504 Sum_probs=79.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecc
Q 005698 66 LKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAK 138 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~ 138 (682)
..++|||+|||+.+|+++|++||..||+|..|.|+ .++|||||+|.+.++|+.|| .|||..|.|+.|.|.|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 36899999999999999999999999999999997 35699999999999999999 899999999999999987
Q ss_pred cCCCCCCCCCCCccCCchhhhhHH
Q 005698 139 SFPQKPSHLNSSLAGSSLPMMMQQ 162 (682)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~P~~~~~ 162 (682)
+..... ....+...++|..+..
T Consensus 82 ~~~~~~--~~~~l~v~~l~~~~~~ 103 (352)
T TIGR01661 82 PSSDSI--KGANLYVSGLPKTMTQ 103 (352)
T ss_pred cccccc--ccceEEECCccccCCH
Confidence 643321 2334556666655443
No 12
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=6.7e-13 Score=120.65 Aligned_cols=75 Identities=29% Similarity=0.488 Sum_probs=69.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecc
Q 005698 66 LKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAK 138 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~ 138 (682)
..+|||||||++.++|++|.+||..+|+|..|.|- .+.|||||+|...++|+.|| .++|+.|+.+.|.|.|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 37899999999999999999999999999999874 47899999999999999999 899999999999999987
Q ss_pred cC
Q 005698 139 SF 140 (682)
Q Consensus 139 ~~ 140 (682)
..
T Consensus 115 GF 116 (153)
T KOG0121|consen 115 GF 116 (153)
T ss_pred cc
Confidence 54
No 13
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=1.6e-12 Score=131.36 Aligned_cols=82 Identities=23% Similarity=0.418 Sum_probs=76.1
Q ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEeccc
Q 005698 61 GKADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKS 139 (682)
Q Consensus 61 ~~~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~ 139 (682)
++..+..++||||||+..+||++|++.|..||.|.+|+|.+.+|||||.|.+.|.|..|| .|||++|.|..++|.|.+.
T Consensus 158 NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe 237 (321)
T KOG0148|consen 158 NQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKE 237 (321)
T ss_pred ccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecccceEEEEecchhhHHHHHHHhcCceeCceEEEEecccc
Confidence 345667899999999999999999999999999999999999999999999999999999 8999999999999999886
Q ss_pred CCC
Q 005698 140 FPQ 142 (682)
Q Consensus 140 ~~~ 142 (682)
...
T Consensus 238 ~~~ 240 (321)
T KOG0148|consen 238 GDD 240 (321)
T ss_pred CCC
Confidence 543
No 14
>PLN03213 repressor of silencing 3; Provisional
Probab=99.36 E-value=1.8e-12 Score=139.35 Aligned_cols=76 Identities=28% Similarity=0.357 Sum_probs=69.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe--cCCCeEEEEeCCH--HHHHHHH-HcCCceecCceEEEEecc
Q 005698 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT--DSKHFAYIEYSKP--EEATAAL-ALNNMDVGGRPLNVEMAK 138 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~--~~kg~aFVeF~s~--e~A~~Al-~Lng~~l~Gr~L~V~~a~ 138 (682)
......||||||++.||+++|..+|..||.|..|.|+ ..+|||||+|... .++..|| .|||..|.|+.|+|+.|+
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 3456799999999999999999999999999999998 4689999999987 7899999 899999999999999987
Q ss_pred c
Q 005698 139 S 139 (682)
Q Consensus 139 ~ 139 (682)
+
T Consensus 87 P 87 (759)
T PLN03213 87 E 87 (759)
T ss_pred H
Confidence 4
No 15
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.36 E-value=3.1e-12 Score=146.17 Aligned_cols=74 Identities=30% Similarity=0.478 Sum_probs=68.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEec
Q 005698 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMA 137 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a 137 (682)
...++|||+||++.+++++|+++|..||.|..|.|+ .++|||||+|.+.++|+.|| .|||..|.|+.|.|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 356899999999999999999999999999999986 47899999999999999999 89999999999999865
Q ss_pred c
Q 005698 138 K 138 (682)
Q Consensus 138 ~ 138 (682)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 4
No 16
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=99.35 E-value=6e-12 Score=132.51 Aligned_cols=72 Identities=26% Similarity=0.331 Sum_probs=64.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEec---------CCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEec
Q 005698 67 KKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITD---------SKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEMA 137 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~---------~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~a 137 (682)
...|.|.||.+.+|.++|+.||+.+|+|.++.|+. ....|||.|.+...+..|.+|.+++|.|+.|.|..+
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 34899999999999999999999999999998872 345899999999999999999999999999988754
Q ss_pred c
Q 005698 138 K 138 (682)
Q Consensus 138 ~ 138 (682)
.
T Consensus 87 ~ 87 (479)
T KOG4676|consen 87 G 87 (479)
T ss_pred C
Confidence 3
No 17
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=1.3e-12 Score=125.39 Aligned_cols=75 Identities=24% Similarity=0.426 Sum_probs=70.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe---cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecccC
Q 005698 66 LKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT---DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKSF 140 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~---~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~~ 140 (682)
..++|||||||.+|.+.+|++||-+||.|..|.|. ....||||+|++.-+|+.|| .-||+.|+|..|.|+|+...
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 47899999999999999999999999999999997 35689999999999999999 89999999999999998765
No 18
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.33 E-value=8.8e-12 Score=142.48 Aligned_cols=75 Identities=25% Similarity=0.550 Sum_probs=70.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEeccc
Q 005698 67 KKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKS 139 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~ 139 (682)
..+|||+||++.+++++|+++|..||.|+.|.|. ..+|||||+|.+.++|..|| .|||+.|+|+.|.|.++..
T Consensus 204 ~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 204 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred cceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 4689999999999999999999999999999997 36899999999999999999 8999999999999999886
Q ss_pred CC
Q 005698 140 FP 141 (682)
Q Consensus 140 ~~ 141 (682)
.+
T Consensus 284 pP 285 (612)
T TIGR01645 284 PP 285 (612)
T ss_pred Cc
Confidence 43
No 19
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.31 E-value=5.9e-12 Score=104.34 Aligned_cols=64 Identities=39% Similarity=0.640 Sum_probs=57.5
Q ss_pred EEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecC-----CCeEEEEeCCHHHHHHHH-HcCCceecCceEE
Q 005698 70 LQVSNLSPLLTVEQLRQLFSFCGTVVECTITDS-----KHFAYIEYSKPEEATAAL-ALNNMDVGGRPLN 133 (682)
Q Consensus 70 L~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~-----kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~ 133 (682)
|||+|||+.+++++|.++|..||.|..|.|... +++|||+|.+.++|..|| .++|..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999999833 699999999999999999 6888999999874
No 20
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.30 E-value=7.7e-12 Score=135.58 Aligned_cols=77 Identities=34% Similarity=0.514 Sum_probs=69.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecC--ceEEEE
Q 005698 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGG--RPLNVE 135 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~G--r~L~V~ 135 (682)
...++|||+|||..|||++|+++|.+||+|+.|.|+ ..+|||||+|.+.++|+.|| .||++.|.| +.|.|.
T Consensus 191 ~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 191 IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVR 270 (346)
T ss_pred cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 346789999999999999999999999999999987 24689999999999999999 899999876 689999
Q ss_pred ecccCC
Q 005698 136 MAKSFP 141 (682)
Q Consensus 136 ~a~~~~ 141 (682)
|+....
T Consensus 271 ~a~~~~ 276 (346)
T TIGR01659 271 LAEEHG 276 (346)
T ss_pred ECCccc
Confidence 987643
No 21
>smart00362 RRM_2 RNA recognition motif.
Probab=99.30 E-value=1.3e-11 Score=100.17 Aligned_cols=66 Identities=45% Similarity=0.727 Sum_probs=61.8
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecC----CCeEEEEeCCHHHHHHHH-HcCCceecCceEEE
Q 005698 69 TLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDS----KHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNV 134 (682)
Q Consensus 69 tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~----kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V 134 (682)
+|||+|||..+++++|.++|..||.|..|.+... .|+|||+|.+.++|+.|+ .|+|..|.|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 5899999999999999999999999999998844 499999999999999999 79999999999887
No 22
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.29 E-value=9.6e-12 Score=109.31 Aligned_cols=75 Identities=25% Similarity=0.350 Sum_probs=69.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe---cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEeccc
Q 005698 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT---DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKS 139 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~---~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~ 139 (682)
+....|||.|||+.+|.+++.+||+.||.|..|.|- ..+|.|||.|++..+|..|+ +|+|+.++++.|.|-+..+
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 457899999999999999999999999999999996 57899999999999999999 9999999999999987554
No 23
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.28 E-value=9.6e-12 Score=139.65 Aligned_cols=73 Identities=34% Similarity=0.571 Sum_probs=69.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEeccc
Q 005698 67 KKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKS 139 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~ 139 (682)
..+|||+|||+.+|+++|++||..||.|..|.|+ ..+|||||+|.+.++|..|| .|||+.|.|+.|.|.|+..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 6899999999999999999999999999999987 35799999999999999999 8999999999999999873
No 24
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=9.1e-12 Score=124.56 Aligned_cols=75 Identities=28% Similarity=0.405 Sum_probs=71.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecc
Q 005698 66 LKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAK 138 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~ 138 (682)
..++|-|.||+.++++++|.+||..||.|..|.|. .++|||||.|.+.++|++|| .|||+-++.-.|.|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 57899999999999999999999999999999987 48999999999999999999 899999999999999998
Q ss_pred cC
Q 005698 139 SF 140 (682)
Q Consensus 139 ~~ 140 (682)
+.
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 74
No 25
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.26 E-value=2.2e-11 Score=138.50 Aligned_cols=75 Identities=29% Similarity=0.420 Sum_probs=69.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecc
Q 005698 66 LKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAK 138 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~ 138 (682)
..++|||+|||+.+|+++|.+||..||.|..|.|+ ..+|||||+|.+.++|..|| .|||+.|.|+.|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 45799999999999999999999999999999886 26899999999999999999 899999999999999987
Q ss_pred cC
Q 005698 139 SF 140 (682)
Q Consensus 139 ~~ 140 (682)
..
T Consensus 374 ~~ 375 (509)
T TIGR01642 374 VG 375 (509)
T ss_pred cC
Confidence 54
No 26
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.26 E-value=6.7e-12 Score=128.05 Aligned_cols=74 Identities=31% Similarity=0.499 Sum_probs=69.5
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecccCCCC
Q 005698 68 KTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKSFPQK 143 (682)
Q Consensus 68 ~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~~~~~ 143 (682)
-.|||||||..+++.+|+.||++||+|++|+|+ ++||||..++...|+.|| .|||+.|+|..|+|+-++.+...
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv--KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~ 77 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV--KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKA 77 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee--cccceEEeecccccHHHHhhcccceecceEEEEEeccccCCC
Confidence 479999999999999999999999999999999 999999999999999999 79999999999999998876433
No 27
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.25 E-value=2.2e-11 Score=140.54 Aligned_cols=94 Identities=23% Similarity=0.412 Sum_probs=76.6
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecccCC
Q 005698 69 TLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKSFP 141 (682)
Q Consensus 69 tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~~~ 141 (682)
+|||+|||+.+||++|.++|..||.|..|.|+ .+.|||||+|.+.++|+.|| .||+..|.|+.|.|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 79999999999999999999999999999997 35689999999999999999 899999999999999986443
Q ss_pred CCCCCCCCCccCCchhhhhHH
Q 005698 142 QKPSHLNSSLAGSSLPMMMQQ 162 (682)
Q Consensus 142 ~~~~~~~~~~~~~~~P~~~~~ 162 (682)
.........+.+.+||..+..
T Consensus 82 ~~~~~~~~~vfV~nLp~~~~~ 102 (562)
T TIGR01628 82 SLRRSGVGNIFVKNLDKSVDN 102 (562)
T ss_pred cccccCCCceEEcCCCccCCH
Confidence 322222233555666654433
No 28
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.25 E-value=2e-11 Score=137.02 Aligned_cols=77 Identities=30% Similarity=0.373 Sum_probs=70.6
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEe
Q 005698 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEM 136 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~ 136 (682)
.+...++|||+|||+.+++++|++||..||.|..|.|+ ..+|||||+|.+.++|..||.|+|..|.|+.|.|.+
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQS 164 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEee
Confidence 34457899999999999999999999999999999997 358999999999999999999999999999999988
Q ss_pred ccc
Q 005698 137 AKS 139 (682)
Q Consensus 137 a~~ 139 (682)
+..
T Consensus 165 ~~~ 167 (457)
T TIGR01622 165 SQA 167 (457)
T ss_pred cch
Confidence 654
No 29
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=1e-11 Score=123.84 Aligned_cols=77 Identities=27% Similarity=0.355 Sum_probs=70.0
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEe
Q 005698 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEM 136 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~ 136 (682)
.|..-++||||||++.++.+.|+.+|++||+|+++.|+ .++|||||+|.+.+.|..|++--+-+|+|++..|++
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnl 87 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNL 87 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccch
Confidence 34456899999999999999999999999999998887 589999999999999999997777899999999998
Q ss_pred ccc
Q 005698 137 AKS 139 (682)
Q Consensus 137 a~~ 139 (682)
|--
T Consensus 88 A~l 90 (247)
T KOG0149|consen 88 ASL 90 (247)
T ss_pred hhh
Confidence 865
No 30
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=1.2e-12 Score=125.56 Aligned_cols=76 Identities=24% Similarity=0.399 Sum_probs=70.2
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEec
Q 005698 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMA 137 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a 137 (682)
....-|||||||+.+||.||.-+|++||+|+.|.|+ .++||||++|++.-....|+ .|||+.|.|+.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 346789999999999999999999999999999998 58999999999999999999 99999999999999876
Q ss_pred ccC
Q 005698 138 KSF 140 (682)
Q Consensus 138 ~~~ 140 (682)
...
T Consensus 113 ~~Y 115 (219)
T KOG0126|consen 113 SNY 115 (219)
T ss_pred ccc
Confidence 544
No 31
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.24 E-value=2.3e-11 Score=138.87 Aligned_cols=73 Identities=29% Similarity=0.434 Sum_probs=69.1
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcC--CCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecccCC
Q 005698 67 KKTLQVSNLSPLLTVEQLRQLFSFC--GTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKSFP 141 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~~~--G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~~~ 141 (682)
.++|||+||+..+++++|+++|..| |.|+.|.++ ++||||+|.+.++|+.|| .|||.+|.|+.|.|.|+++..
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~ 308 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVD 308 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCC
Confidence 5789999999999999999999999 999999887 789999999999999999 799999999999999998753
No 32
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=7.6e-12 Score=123.01 Aligned_cols=80 Identities=29% Similarity=0.450 Sum_probs=74.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEec
Q 005698 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMA 137 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a 137 (682)
...+|||||+|...||+.-|...|-.||.|..|.|+ +.+|||||+|...++|..|| .||+.+|.|+.|+|++|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 357899999999999999999999999999999997 57899999999999999999 89999999999999999
Q ss_pred ccCCCCC
Q 005698 138 KSFPQKP 144 (682)
Q Consensus 138 ~~~~~~~ 144 (682)
++...+.
T Consensus 88 kP~kike 94 (298)
T KOG0111|consen 88 KPEKIKE 94 (298)
T ss_pred CCccccC
Confidence 9765544
No 33
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.22 E-value=3.5e-11 Score=136.37 Aligned_cols=74 Identities=20% Similarity=0.223 Sum_probs=69.6
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-H--cCCceecCceEEEEecccC
Q 005698 67 KKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-A--LNNMDVGGRPLNVEMAKSF 140 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~--Lng~~l~Gr~L~V~~a~~~ 140 (682)
.++|||+|||+.+|+++|.++|..||.|..|.|+..++||||+|.+.++|+.|| . +++..|.|+.|.|.|+...
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~ 78 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQ 78 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCc
Confidence 679999999999999999999999999999999988999999999999999999 4 5889999999999998754
No 34
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.21 E-value=4.3e-11 Score=135.68 Aligned_cols=77 Identities=31% Similarity=0.402 Sum_probs=70.6
Q ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHhcCCCeEEEEEe-cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecccC
Q 005698 64 DALKKTLQVSNLSP-LLTVEQLRQLFSFCGTVVECTIT-DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKSF 140 (682)
Q Consensus 64 ~~~~~tL~V~NLp~-~vteedL~~~F~~~G~V~~v~i~-~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~~ 140 (682)
..+.++|||+||++ .+|+++|.++|+.||.|..|.|+ ..+|||||+|.+.++|..|| .|||..|.|+.|.|.+++..
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 44678999999997 69999999999999999999987 45799999999999999999 89999999999999998653
No 35
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=4.2e-11 Score=124.73 Aligned_cols=80 Identities=29% Similarity=0.542 Sum_probs=73.2
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEE
Q 005698 62 KADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNV 134 (682)
Q Consensus 62 ~~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V 134 (682)
...++.++|||+.|.+.+|.+||..||+.||.|..|.|+ ....||||+|++.++|++|+ .|+++.|+++.|.|
T Consensus 234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred ccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 345678999999999999999999999999999999998 46689999999999999999 89999999999999
Q ss_pred EecccCC
Q 005698 135 EMAKSFP 141 (682)
Q Consensus 135 ~~a~~~~ 141 (682)
.|++...
T Consensus 314 DFSQSVs 320 (479)
T KOG0415|consen 314 DFSQSVS 320 (479)
T ss_pred ehhhhhh
Confidence 9987643
No 36
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.21 E-value=3.1e-11 Score=116.09 Aligned_cols=74 Identities=32% Similarity=0.477 Sum_probs=69.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEec
Q 005698 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMA 137 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a 137 (682)
....|||||||+..++++.|.++|-++|.|+.|.|+ ...|||||+|.++++|+-|| .||.+.|.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 346799999999999999999999999999999997 37899999999999999999 89999999999999987
Q ss_pred c
Q 005698 138 K 138 (682)
Q Consensus 138 ~ 138 (682)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 7
No 37
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.20 E-value=5.7e-11 Score=135.13 Aligned_cols=78 Identities=26% Similarity=0.366 Sum_probs=68.1
Q ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhcC------------CCeEEEEEecCCCeEEEEeCCHHHHHHHHHcCCceec
Q 005698 61 GKADALKKTLQVSNLSPLLTVEQLRQLFSFC------------GTVVECTITDSKHFAYIEYSKPEEATAALALNNMDVG 128 (682)
Q Consensus 61 ~~~~~~~~tL~V~NLp~~vteedL~~~F~~~------------G~V~~v~i~~~kg~aFVeF~s~e~A~~Al~Lng~~l~ 128 (682)
...+...++|||||||+.+|+++|.+||..| +.|..|.+...+|||||+|.+.++|..||.|||+.|.
T Consensus 169 ~~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al~l~g~~~~ 248 (509)
T TIGR01642 169 QQATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAMALDSIIYS 248 (509)
T ss_pred ccCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhhcCCCeEee
Confidence 3455667899999999999999999999974 4566777778899999999999999999999999999
Q ss_pred CceEEEEecc
Q 005698 129 GRPLNVEMAK 138 (682)
Q Consensus 129 Gr~L~V~~a~ 138 (682)
|..|.|....
T Consensus 249 g~~l~v~r~~ 258 (509)
T TIGR01642 249 NVFLKIRRPH 258 (509)
T ss_pred CceeEecCcc
Confidence 9999997543
No 38
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.19 E-value=2.4e-11 Score=111.47 Aligned_cols=77 Identities=23% Similarity=0.283 Sum_probs=70.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEec
Q 005698 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMA 137 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a 137 (682)
...-.|||.|+.+.+|+++|.+.|..||+|..|.|. -.+|||+|+|++.++|+.|| +|||..|.|..|.|.||
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 345689999999999999999999999999999986 36899999999999999999 89999999999999999
Q ss_pred ccCC
Q 005698 138 KSFP 141 (682)
Q Consensus 138 ~~~~ 141 (682)
-...
T Consensus 150 Fv~g 153 (170)
T KOG0130|consen 150 FVKG 153 (170)
T ss_pred EecC
Confidence 7543
No 39
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.18 E-value=1.1e-10 Score=95.14 Aligned_cols=68 Identities=51% Similarity=0.760 Sum_probs=63.2
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEec-----CCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEe
Q 005698 69 TLQVSNLSPLLTVEQLRQLFSFCGTVVECTITD-----SKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEM 136 (682)
Q Consensus 69 tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~-----~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~ 136 (682)
+|||+|||..+++++|.++|..||.|..+.+.. ..++|||+|.+.++|..|+ .|++..|.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 589999999999999999999999999999983 3799999999999999999 8999999999999864
No 40
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.18 E-value=6.5e-11 Score=136.59 Aligned_cols=75 Identities=37% Similarity=0.629 Sum_probs=69.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe-----cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecc
Q 005698 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT-----DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAK 138 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~-----~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~ 138 (682)
....+|||+||++.+|+++|+++|..||.|+.|.|+ ..+|||||+|.+.++|..|| .|||..|+|+.|.|.|+.
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~ 362 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQ 362 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEecc
Confidence 346789999999999999999999999999999997 35799999999999999999 899999999999999987
Q ss_pred c
Q 005698 139 S 139 (682)
Q Consensus 139 ~ 139 (682)
.
T Consensus 363 ~ 363 (562)
T TIGR01628 363 R 363 (562)
T ss_pred C
Confidence 4
No 41
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.18 E-value=1.1e-11 Score=135.92 Aligned_cols=71 Identities=32% Similarity=0.507 Sum_probs=66.4
Q ss_pred EEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecccC
Q 005698 70 LQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKSF 140 (682)
Q Consensus 70 L~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~~ 140 (682)
||||||.+++++++|..+|..||.|..|.++ ..+|||||+|.+.++|..|+ .|||++|.|+.|+|......
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 9999999999999999999999999999987 47899999999999999999 89999999999999776544
No 42
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.18 E-value=8.4e-11 Score=134.26 Aligned_cols=75 Identities=25% Similarity=0.402 Sum_probs=67.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe-----cCCCeEEEEeCCHHHHHHHH-HcCCceec-CceEEEEe
Q 005698 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT-----DSKHFAYIEYSKPEEATAAL-ALNNMDVG-GRPLNVEM 136 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~-----~~kg~aFVeF~s~e~A~~Al-~Lng~~l~-Gr~L~V~~ 136 (682)
....++|||+|||.+++|++|.++|.+||.|..|.|+ .++|||||+|.+.++|+.|| .||+.+|. |+.|.|.+
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 3457899999999999999999999999999999986 47899999999999999999 89999985 78888876
Q ss_pred cc
Q 005698 137 AK 138 (682)
Q Consensus 137 a~ 138 (682)
+.
T Consensus 135 S~ 136 (578)
T TIGR01648 135 SV 136 (578)
T ss_pred cc
Confidence 53
No 43
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=1.3e-10 Score=117.00 Aligned_cols=103 Identities=27% Similarity=0.466 Sum_probs=87.9
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEE
Q 005698 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVE 135 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~ 135 (682)
.++..++|+|.-||.++|+++|+.||..+|+|+.|+|+ ++.|||||.|.++++|++|| .|||..|..+.|+|.
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 45667899999999999999999999999999999998 57899999999999999999 899999999999999
Q ss_pred ecccCCCCCCCCCCCccCCchhhhhHHHHHHH
Q 005698 136 MAKSFPQKPSHLNSSLAGSSLPMMMQQAVAMQ 167 (682)
Q Consensus 136 ~a~~~~~~~~~~~~~~~~~~~P~~~~~~~~~q 167 (682)
||.+.... +....+.+..+|..|.|....+
T Consensus 117 yARPSs~~--Ik~aNLYvSGlPktMtqkelE~ 146 (360)
T KOG0145|consen 117 YARPSSDS--IKDANLYVSGLPKTMTQKELEQ 146 (360)
T ss_pred eccCChhh--hcccceEEecCCccchHHHHHH
Confidence 99875433 3345667777887776654433
No 44
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.16 E-value=9.5e-11 Score=118.80 Aligned_cols=72 Identities=39% Similarity=0.595 Sum_probs=68.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecc
Q 005698 67 KKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAK 138 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~ 138 (682)
..+|||+|||..+|+++|.++|..||.|..|.|. ..+|||||+|.+.++|..|| .|+|..|.|+.|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 6999999999999999999999999999988886 46799999999999999999 899999999999999965
No 45
>smart00360 RRM RNA recognition motif.
Probab=99.14 E-value=1.4e-10 Score=93.50 Aligned_cols=63 Identities=46% Similarity=0.734 Sum_probs=58.4
Q ss_pred EeCCCCCCCHHHHHHHHhcCCCeEEEEEec------CCCeEEEEeCCHHHHHHHH-HcCCceecCceEEE
Q 005698 72 VSNLSPLLTVEQLRQLFSFCGTVVECTITD------SKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNV 134 (682)
Q Consensus 72 V~NLp~~vteedL~~~F~~~G~V~~v~i~~------~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V 134 (682)
|+|||..+++++|.++|..||.|..|.|.. ..|||||+|.+.++|..|+ .|++..|.|+.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 689999999999999999999999999873 2579999999999999999 89999999999887
No 46
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.13 E-value=2e-10 Score=91.44 Aligned_cols=54 Identities=41% Similarity=0.629 Sum_probs=50.1
Q ss_pred HHHHHhcCCCeEEEEEecCC-CeEEEEeCCHHHHHHHH-HcCCceecCceEEEEec
Q 005698 84 LRQLFSFCGTVVECTITDSK-HFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMA 137 (682)
Q Consensus 84 L~~~F~~~G~V~~v~i~~~k-g~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a 137 (682)
|.++|++||+|..|.+.... ++|||+|.+.++|..|+ .|||..|.|+.|.|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999998666 99999999999999999 89999999999999986
No 47
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.09 E-value=1.5e-10 Score=124.05 Aligned_cols=74 Identities=30% Similarity=0.504 Sum_probs=69.6
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecccCCC
Q 005698 67 KKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKSFPQ 142 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~~~~ 142 (682)
-+.|||.||+..+|++.|+++|.+||.|+.|..+ +-||||.|.+.++|.+|| .|||++|+|..|.|.+|++...
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~--rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k 333 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP--RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDK 333 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeecc--cceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhh
Confidence 4789999999999999999999999999999887 779999999999999999 8999999999999999997543
No 48
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.06 E-value=1.4e-10 Score=118.43 Aligned_cols=79 Identities=30% Similarity=0.598 Sum_probs=73.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecccCCC
Q 005698 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKSFPQ 142 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~~~~ 142 (682)
....++|+||||.+.|+.++|+..|.+||.|++|+|+ ++|+||.|.-.++|..|| .|||++|.|++|+|+++.....
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv--kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlr 152 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV--KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 152 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeee--cceeEEEEeeccchHHHHhcccccccccceeeeeeeccccc
Confidence 4567899999999999999999999999999999999 999999999999999999 8999999999999999886544
Q ss_pred CC
Q 005698 143 KP 144 (682)
Q Consensus 143 ~~ 144 (682)
..
T Consensus 153 ta 154 (346)
T KOG0109|consen 153 TA 154 (346)
T ss_pred cC
Confidence 33
No 49
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=1.9e-10 Score=116.50 Aligned_cols=75 Identities=27% Similarity=0.474 Sum_probs=70.8
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEeccc
Q 005698 67 KKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKS 139 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~ 139 (682)
.--||||.|.+.|+-++|++.|.+||+|.+++|+ +++|||||.|.+.++|+.|| +|||.+|+++.|+..||.-
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 4579999999999999999999999999999997 68999999999999999999 8999999999999999986
Q ss_pred CC
Q 005698 140 FP 141 (682)
Q Consensus 140 ~~ 141 (682)
++
T Consensus 142 Kp 143 (321)
T KOG0148|consen 142 KP 143 (321)
T ss_pred Cc
Confidence 65
No 50
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.05 E-value=5.8e-10 Score=119.70 Aligned_cols=77 Identities=23% Similarity=0.390 Sum_probs=69.8
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceec-CceEE
Q 005698 62 KADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVG-GRPLN 133 (682)
Q Consensus 62 ~~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~-Gr~L~ 133 (682)
......+-||||.||.++.|++|..||+..|+|-++.|+ .++|||||+|.+.++|+.|| .||+++|. |+.|.
T Consensus 78 ~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~ig 157 (506)
T KOG0117|consen 78 PPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLG 157 (506)
T ss_pred CCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeE
Confidence 334668999999999999999999999999999999997 58999999999999999999 89999995 88888
Q ss_pred EEecc
Q 005698 134 VEMAK 138 (682)
Q Consensus 134 V~~a~ 138 (682)
|..+.
T Consensus 158 vc~Sv 162 (506)
T KOG0117|consen 158 VCVSV 162 (506)
T ss_pred EEEee
Confidence 87654
No 51
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.04 E-value=5.1e-10 Score=117.03 Aligned_cols=80 Identities=21% Similarity=0.333 Sum_probs=74.3
Q ss_pred cCCCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH--HcCCceecCceEEEEec
Q 005698 60 AGKADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL--ALNNMDVGGRPLNVEMA 137 (682)
Q Consensus 60 ~~~~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al--~Lng~~l~Gr~L~V~~a 137 (682)
+..+|...++|||+||...+++.+|.++|.+||+|..|.+...+++|||+|.+.+.|+.|. .+|.++|+|.+|.|.|+
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 4456777899999999999999999999999999999999988999999999999999999 48989999999999999
Q ss_pred cc
Q 005698 138 KS 139 (682)
Q Consensus 138 ~~ 139 (682)
.+
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 87
No 52
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.03 E-value=6e-10 Score=121.86 Aligned_cols=82 Identities=29% Similarity=0.397 Sum_probs=73.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe-----cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEec
Q 005698 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT-----DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMA 137 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~-----~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a 137 (682)
+.+.-.|+|.|||+.|...+|+.+|+.||.|.+|.|+ ...|||||+|....+|..|| .|||..|+|++|-|.||
T Consensus 114 ~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWA 193 (678)
T KOG0127|consen 114 DLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWA 193 (678)
T ss_pred cCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeee
Confidence 3346789999999999999999999999999999998 35699999999999999999 89999999999999999
Q ss_pred ccCCCCCC
Q 005698 138 KSFPQKPS 145 (682)
Q Consensus 138 ~~~~~~~~ 145 (682)
-.......
T Consensus 194 V~Kd~ye~ 201 (678)
T KOG0127|consen 194 VDKDTYED 201 (678)
T ss_pred cccccccc
Confidence 87655443
No 53
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.02 E-value=7.4e-10 Score=118.38 Aligned_cols=79 Identities=34% Similarity=0.493 Sum_probs=71.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe-----cCCCeEEEEeCCHHHHHHHH-HcCCc-eecC--ceEEEEe
Q 005698 66 LKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT-----DSKHFAYIEYSKPEEATAAL-ALNNM-DVGG--RPLNVEM 136 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~-----~~kg~aFVeF~s~e~A~~Al-~Lng~-~l~G--r~L~V~~ 136 (682)
...+||||-|+..+||.+|+++|.+||.|++|.|. .++|||||+|.+.+.|..|| .|||. .+.| .+|.|.|
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkF 202 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKF 202 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEe
Confidence 36789999999999999999999999999999998 48999999999999999999 89994 5555 7899999
Q ss_pred cccCCCCC
Q 005698 137 AKSFPQKP 144 (682)
Q Consensus 137 a~~~~~~~ 144 (682)
|.+...+.
T Consensus 203 ADtqkdk~ 210 (510)
T KOG0144|consen 203 ADTQKDKD 210 (510)
T ss_pred cccCCCch
Confidence 99876554
No 54
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.00 E-value=6.2e-10 Score=122.90 Aligned_cols=73 Identities=30% Similarity=0.432 Sum_probs=69.5
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecccC
Q 005698 68 KTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKSF 140 (682)
Q Consensus 68 ~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~~ 140 (682)
..|||||||+.+++++|.++|..+|.|..++++ ..+|||||+|.+.++|..|| .|||.+|.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 899999999999999999999999999999997 57899999999999999999 89999999999999998643
No 55
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.99 E-value=1.4e-09 Score=109.56 Aligned_cols=74 Identities=30% Similarity=0.400 Sum_probs=69.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecc
Q 005698 66 LKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAK 138 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~ 138 (682)
..-+|||-||.+++.|.-|.++|++||.|..|+|+ +.+|||||.+.+.++|..|| .|||+.|+++.|.|.|..
T Consensus 277 ~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred CeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 46789999999999999999999999999999997 58999999999999999999 899999999999999865
Q ss_pred c
Q 005698 139 S 139 (682)
Q Consensus 139 ~ 139 (682)
.
T Consensus 357 n 357 (360)
T KOG0145|consen 357 N 357 (360)
T ss_pred C
Confidence 3
No 56
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.96 E-value=9.8e-10 Score=124.37 Aligned_cols=78 Identities=23% Similarity=0.358 Sum_probs=74.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecccCCCCC
Q 005698 67 KKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKSFPQKP 144 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~~~~~~ 144 (682)
.+|||||+|+..|+++||..+|+.||+|..|.|+.+++||||++....+|+.|| +|.++.|.++.|+|.|+.....+.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ks 499 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPKS 499 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcch
Confidence 589999999999999999999999999999999999999999999999999999 899999999999999998765554
No 57
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.96 E-value=1.2e-09 Score=109.63 Aligned_cols=70 Identities=20% Similarity=0.425 Sum_probs=66.4
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEeccc
Q 005698 68 KTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKS 139 (682)
Q Consensus 68 ~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~ 139 (682)
..||||+||+.+.+.+|..||..||.|..|.|. .||+||+|.+.-+|..|| .|||.+|+|-.|.|+|+..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 469999999999999999999999999999998 799999999999999999 8999999998899999885
No 58
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.95 E-value=1.2e-09 Score=110.37 Aligned_cols=81 Identities=23% Similarity=0.409 Sum_probs=73.7
Q ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEE
Q 005698 61 GKADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLN 133 (682)
Q Consensus 61 ~~~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~ 133 (682)
..+.+..++|||-.||..+.+.+|..+|-.||.|+..++. .+++||||.|.+...++.|| +|||+.|+-++|+
T Consensus 279 qreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLK 358 (371)
T KOG0146|consen 279 QREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK 358 (371)
T ss_pred hhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhh
Confidence 4556778999999999999999999999999999988875 68999999999999999999 8999999999999
Q ss_pred EEecccCC
Q 005698 134 VEMAKSFP 141 (682)
Q Consensus 134 V~~a~~~~ 141 (682)
|.+..++.
T Consensus 359 VQLKRPkd 366 (371)
T KOG0146|consen 359 VQLKRPKD 366 (371)
T ss_pred hhhcCccc
Confidence 98876653
No 59
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.94 E-value=2.2e-09 Score=117.61 Aligned_cols=76 Identities=30% Similarity=0.327 Sum_probs=67.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-Hc-----CC-ceecCc
Q 005698 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-AL-----NN-MDVGGR 130 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~L-----ng-~~l~Gr 130 (682)
.....||||.|||+++|+++|.++|.+||+|.++.|+ .++|+|||.|.+..+|+.|| .. .| +.|.|+
T Consensus 289 ~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR 368 (678)
T KOG0127|consen 289 ITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGR 368 (678)
T ss_pred ccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEecc
Confidence 3446899999999999999999999999999999987 58999999999999999999 33 34 789999
Q ss_pred eEEEEeccc
Q 005698 131 PLNVEMAKS 139 (682)
Q Consensus 131 ~L~V~~a~~ 139 (682)
.|.|..|.+
T Consensus 369 ~Lkv~~Av~ 377 (678)
T KOG0127|consen 369 LLKVTLAVT 377 (678)
T ss_pred EEeeeeccc
Confidence 999998864
No 60
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.93 E-value=2.7e-09 Score=112.88 Aligned_cols=74 Identities=22% Similarity=0.243 Sum_probs=57.7
Q ss_pred CCCCCCCCEEEEeCCCC-CCCHHHHHHHHhcCCCeEEEEEe----cCCCeEEEEeCCHHHHHHHHHcCCceecCceEEE
Q 005698 61 GKADALKKTLQVSNLSP-LLTVEQLRQLFSFCGTVVECTIT----DSKHFAYIEYSKPEEATAALALNNMDVGGRPLNV 134 (682)
Q Consensus 61 ~~~~~~~~tL~V~NLp~-~vteedL~~~F~~~G~V~~v~i~----~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V 134 (682)
...+....++||++|.. .|+.+++..+|-.++.++-|..+ .+--||||.|.+...+..+|..+|+.+...+|..
T Consensus 46 ~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~ 124 (479)
T KOG4676|consen 46 SKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTK 124 (479)
T ss_pred ccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecCCCCCccHHHHHhcCcccccccccCCCCccCCCCcccc
Confidence 34566789999999975 55667888888888877666554 3456799999999988888888998888887754
No 61
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.93 E-value=6e-09 Score=105.42 Aligned_cols=77 Identities=31% Similarity=0.472 Sum_probs=68.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe-----cCCCeEEEEeCCHHHHHHHH-HcCC-ceecC--ceEEEEe
Q 005698 66 LKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT-----DSKHFAYIEYSKPEEATAAL-ALNN-MDVGG--RPLNVEM 136 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~-----~~kg~aFVeF~s~e~A~~Al-~Lng-~~l~G--r~L~V~~ 136 (682)
..++||||-|...-.|+|++.+|..||.|.+|.+. ..+|||||.|.+..+|+.|| .|+| .++-| -.|.|.|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 57899999999999999999999999999999987 58999999999999999999 8999 45555 5799999
Q ss_pred cccCCC
Q 005698 137 AKSFPQ 142 (682)
Q Consensus 137 a~~~~~ 142 (682)
+.....
T Consensus 98 ADTdkE 103 (371)
T KOG0146|consen 98 ADTDKE 103 (371)
T ss_pred ccchHH
Confidence 876543
No 62
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.89 E-value=3e-09 Score=113.63 Aligned_cols=72 Identities=25% Similarity=0.404 Sum_probs=67.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHh-cCCCeEEEEEe-----cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecc
Q 005698 67 KKTLQVSNLSPLLTVEQLRQLFS-FCGTVVECTIT-----DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAK 138 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~-~~G~V~~v~i~-----~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~ 138 (682)
.+.|||.|||+++.|++|++||. +.|+|++|.|. +.+|||+|+|+++|.+++|+ .||.+.|.|+.|.|....
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 45699999999999999999998 78999999997 68899999999999999999 899999999999998754
No 63
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.85 E-value=5.7e-09 Score=109.32 Aligned_cols=70 Identities=30% Similarity=0.500 Sum_probs=66.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEE
Q 005698 66 LKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVE 135 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~ 135 (682)
..+.||||.|.+.+.|+.|+..|..||.|..|.|. +.+|||||+|+-++.|+.|+ .|||..|+|+.|+|.
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg 188 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 188 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCcccccc
Confidence 36899999999999999999999999999999985 68999999999999999999 899999999999996
No 64
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.85 E-value=6.8e-09 Score=103.59 Aligned_cols=74 Identities=30% Similarity=0.504 Sum_probs=68.6
Q ss_pred CCEEEEeCCCCCCCHHHHHH----HHhcCCCeEEEEEe---cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecc
Q 005698 67 KKTLQVSNLSPLLTVEQLRQ----LFSFCGTVVECTIT---DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAK 138 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~----~F~~~G~V~~v~i~---~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~ 138 (682)
..||||.||+..+..++|+. ||++||+|+.|.+. +.+|-|||.|.+.+.|-.|+ +|+|+.|.|+.++|+||+
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~ 88 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAK 88 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheeccc
Confidence 33999999999999999888 99999999999886 67899999999999999999 999999999999999997
Q ss_pred cC
Q 005698 139 SF 140 (682)
Q Consensus 139 ~~ 140 (682)
..
T Consensus 89 s~ 90 (221)
T KOG4206|consen 89 SD 90 (221)
T ss_pred Cc
Confidence 53
No 65
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.80 E-value=1.4e-08 Score=114.65 Aligned_cols=71 Identities=39% Similarity=0.571 Sum_probs=66.2
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEec---------CCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEec
Q 005698 68 KTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITD---------SKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMA 137 (682)
Q Consensus 68 ~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~---------~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a 137 (682)
++|||.||++.+|.++|..+|..+|.|..|.|.. +.|||||+|.+.++|+.|| .|+|++|+|+.|.|.++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 3499999999999999999999999999998861 3499999999999999999 89999999999999998
Q ss_pred c
Q 005698 138 K 138 (682)
Q Consensus 138 ~ 138 (682)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 8
No 66
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.79 E-value=3e-09 Score=111.34 Aligned_cols=75 Identities=24% Similarity=0.522 Sum_probs=68.7
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEec
Q 005698 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMA 137 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a 137 (682)
..-..|||..+.++++++||+.+|+-||+|+.|.|. ..+|||||+|.+......|| .||-+.|+|..|+|..+
T Consensus 208 k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 208 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 345799999999999999999999999999999996 57899999999999999999 79999999999999766
Q ss_pred cc
Q 005698 138 KS 139 (682)
Q Consensus 138 ~~ 139 (682)
..
T Consensus 288 vT 289 (544)
T KOG0124|consen 288 VT 289 (544)
T ss_pred cC
Confidence 54
No 67
>smart00361 RRM_1 RNA recognition motif.
Probab=98.78 E-value=1.7e-08 Score=84.24 Aligned_cols=54 Identities=28% Similarity=0.470 Sum_probs=48.1
Q ss_pred HHHHHHHHh----cCCCeEEEE-Ee--------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEE
Q 005698 81 VEQLRQLFS----FCGTVVECT-IT--------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNV 134 (682)
Q Consensus 81 eedL~~~F~----~~G~V~~v~-i~--------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V 134 (682)
+++|.++|. .||.|..|. |. ..+|||||+|.+.++|..|| .|||..|.|+.|.|
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578999999 999999885 32 24899999999999999999 89999999999986
No 68
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.76 E-value=1.2e-08 Score=111.67 Aligned_cols=76 Identities=32% Similarity=0.484 Sum_probs=69.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEec
Q 005698 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMA 137 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a 137 (682)
...++|||.+|...+...||+.||.+||.|+..+|+ ..++|+||++.+.++|..|| +|+-++|.|+.|.|+.+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 345799999999999999999999999999999887 35789999999999999999 89999999999999988
Q ss_pred ccC
Q 005698 138 KSF 140 (682)
Q Consensus 138 ~~~ 140 (682)
+..
T Consensus 483 KNE 485 (940)
T KOG4661|consen 483 KNE 485 (940)
T ss_pred ccC
Confidence 743
No 69
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.74 E-value=2.2e-08 Score=112.51 Aligned_cols=85 Identities=21% Similarity=0.348 Sum_probs=76.3
Q ss_pred CCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe---------cCCCeEEEEeCCHHHHHHHH-HcCC
Q 005698 55 GSPDKAGKADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT---------DSKHFAYIEYSKPEEATAAL-ALNN 124 (682)
Q Consensus 55 ~~~~~~~~~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~---------~~kg~aFVeF~s~e~A~~Al-~Lng 124 (682)
+.+...+..++..++|||+||++.|++++|...|+.||.|..|+|+ ....||||-|.+..+|+.|+ .|+|
T Consensus 162 ~~~gsfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg 241 (877)
T KOG0151|consen 162 GRPGSFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQG 241 (877)
T ss_pred CCCCcCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcc
Confidence 3334455668889999999999999999999999999999999998 36789999999999999999 8999
Q ss_pred ceecCceEEEEeccc
Q 005698 125 MDVGGRPLNVEMAKS 139 (682)
Q Consensus 125 ~~l~Gr~L~V~~a~~ 139 (682)
..|.+..|++.|++.
T Consensus 242 ~iv~~~e~K~gWgk~ 256 (877)
T KOG0151|consen 242 IIVMEYEMKLGWGKA 256 (877)
T ss_pred eeeeeeeeeeccccc
Confidence 999999999999964
No 70
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.73 E-value=2.1e-08 Score=107.38 Aligned_cols=76 Identities=25% Similarity=0.303 Sum_probs=67.8
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe-cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEec
Q 005698 62 KADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT-DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMA 137 (682)
Q Consensus 62 ~~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~-~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a 137 (682)
-.....++|||.|||+++||+.|++-|..||.|.+++|+ ..+..+.|.|.++++|+.|+ .|||..|.|+.|.|.+.
T Consensus 531 gaarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 531 GAARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cccccccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 344567899999999999999999999999999999997 34455699999999999999 89999999999999863
No 71
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.72 E-value=4.1e-09 Score=118.81 Aligned_cols=76 Identities=28% Similarity=0.421 Sum_probs=70.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEec
Q 005698 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMA 137 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a 137 (682)
...+.|+|.|||+..+..+|+.||..||.|..|.|+ -.+|||||+|.++.+|..|+ +|.++-|.|+.|.++|+
T Consensus 611 k~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA 690 (725)
T KOG0110|consen 611 KKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWA 690 (725)
T ss_pred cccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehh
Confidence 346799999999999999999999999999999998 25899999999999999999 89999999999999999
Q ss_pred ccC
Q 005698 138 KSF 140 (682)
Q Consensus 138 ~~~ 140 (682)
...
T Consensus 691 ~~d 693 (725)
T KOG0110|consen 691 KSD 693 (725)
T ss_pred ccc
Confidence 853
No 72
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=3.4e-08 Score=108.05 Aligned_cols=73 Identities=23% Similarity=0.458 Sum_probs=67.4
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe----cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecccCCC
Q 005698 69 TLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT----DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKSFPQ 142 (682)
Q Consensus 69 tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~----~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~~~~ 142 (682)
.|||.||++.++..+|.++|+.||+|+.|+|. ..+|| ||+|.++++|..|| .|||..+.|+.|.|........
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 39999999999999999999999999999997 57899 99999999999999 8999999999999987765444
No 73
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.67 E-value=6.2e-08 Score=103.91 Aligned_cols=80 Identities=21% Similarity=0.356 Sum_probs=71.1
Q ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEE
Q 005698 61 GKADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLN 133 (682)
Q Consensus 61 ~~~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~ 133 (682)
..+.+...+|||.+||..+-+.+|...|..||.|+..++. -+++|+||.|++..+|..|| .|||+.|++++|+
T Consensus 418 q~eGpeGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~Krlk 497 (510)
T KOG0144|consen 418 QVEGPEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLK 497 (510)
T ss_pred cccCCCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccce
Confidence 3455567889999999999999999999999999987764 36899999999999999999 8999999999999
Q ss_pred EEecccC
Q 005698 134 VEMAKSF 140 (682)
Q Consensus 134 V~~a~~~ 140 (682)
|.+....
T Consensus 498 VQlk~~~ 504 (510)
T KOG0144|consen 498 VQLKRDR 504 (510)
T ss_pred EEeeecc
Confidence 9987654
No 74
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.66 E-value=5.4e-08 Score=95.87 Aligned_cols=79 Identities=19% Similarity=0.281 Sum_probs=69.3
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEE
Q 005698 62 KADALKKTLQVSNLSPLLTVEQLRQLFSFC-GTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLN 133 (682)
Q Consensus 62 ~~~~~~~tL~V~NLp~~vteedL~~~F~~~-G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~ 133 (682)
...+....+||..||..+.+.+|..+|.+| |.|..+.|. .++|||||+|++.+.|.-|. .||++.|.|+.|.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 344557789999999999999999999998 677777774 58999999999999999999 8999999999999
Q ss_pred EEecccC
Q 005698 134 VEMAKSF 140 (682)
Q Consensus 134 V~~a~~~ 140 (682)
|.+-.+.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9876654
No 75
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.55 E-value=1.1e-07 Score=91.94 Aligned_cols=81 Identities=28% Similarity=0.388 Sum_probs=69.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEE-EEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEE
Q 005698 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVEC-TIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVE 135 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v-~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~ 135 (682)
.....+|||+||.+.+++..|.++|+.||.|... .|+ ..+|||||.|.+.+.+.+|| .|||..++.++|.|.
T Consensus 93 l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ 172 (203)
T KOG0131|consen 93 LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVS 172 (203)
T ss_pred ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEE
Confidence 3445899999999999999999999999988763 332 46789999999999999999 899999999999999
Q ss_pred ecccCCCCC
Q 005698 136 MAKSFPQKP 144 (682)
Q Consensus 136 ~a~~~~~~~ 144 (682)
++.....+.
T Consensus 173 ya~k~~~kg 181 (203)
T KOG0131|consen 173 YAFKKDTKG 181 (203)
T ss_pred EEEecCCCc
Confidence 998655444
No 76
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.49 E-value=3.3e-07 Score=94.15 Aligned_cols=78 Identities=23% Similarity=0.385 Sum_probs=69.6
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe-----cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEe
Q 005698 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT-----DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEM 136 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~-----~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~ 136 (682)
.+....+|+|.|||+.|+++||++||..||.+..|.|+ .+.|.|-|.|...++|..|| .|||+.|+|+.|.|..
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 44456899999999999999999999999988888886 46799999999999999999 8999999999999987
Q ss_pred cccC
Q 005698 137 AKSF 140 (682)
Q Consensus 137 a~~~ 140 (682)
....
T Consensus 159 i~~~ 162 (243)
T KOG0533|consen 159 ISSP 162 (243)
T ss_pred ecCc
Confidence 6543
No 77
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.49 E-value=1.9e-07 Score=102.94 Aligned_cols=74 Identities=27% Similarity=0.460 Sum_probs=65.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEecccC
Q 005698 67 KKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEMAKSF 140 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~a~~~ 140 (682)
..+|||.|||++++..+|+++|..||.|+...|. ...+||||+|.+.++++.||..+...|+|++|.|+.-...
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecccc
Confidence 4569999999999999999999999999988775 2239999999999999999977799999999999976654
No 78
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.46 E-value=6.4e-08 Score=95.85 Aligned_cols=75 Identities=23% Similarity=0.289 Sum_probs=67.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe----cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEeccc
Q 005698 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT----DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKS 139 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~----~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~ 139 (682)
+...||||+||...|+|+-|.++|-+.|.|+.|.|. ....||||+|.++..+..|+ .|||..|.+..|.|.+-.+
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 357899999999999999999999999999999997 22349999999999999999 7999999999999876543
No 79
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.45 E-value=4.3e-07 Score=93.24 Aligned_cols=80 Identities=24% Similarity=0.433 Sum_probs=73.0
Q ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHHHcCCceecCceEEE
Q 005698 61 GKADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAALALNNMDVGGRPLNV 134 (682)
Q Consensus 61 ~~~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V 134 (682)
...+.....|||+|+.+.+|.++|..+|..||.|..|.|. +.+|||||+|.+.+.++.||.|||..|.|..|.|
T Consensus 95 ~~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 95 RQKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEV 174 (231)
T ss_pred hhhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCccccccccee
Confidence 4567778999999999999999999999999999877775 4789999999999999999999999999999999
Q ss_pred EecccC
Q 005698 135 EMAKSF 140 (682)
Q Consensus 135 ~~a~~~ 140 (682)
.+....
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 987765
No 80
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.44 E-value=2.2e-07 Score=102.92 Aligned_cols=79 Identities=27% Similarity=0.436 Sum_probs=70.5
Q ss_pred CCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe-cCCCeEEEEeCCHHHHHHHH-HcCCceecCceE
Q 005698 55 GSPDKAGKADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT-DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPL 132 (682)
Q Consensus 55 ~~~~~~~~~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~-~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L 132 (682)
..+++....+-...+|+|-|||..|++++|..+|+.||+|..|... ...|.+||+|.|.-+|+.|| +|++.+|.|+.|
T Consensus 63 ~~~~np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~ 142 (549)
T KOG4660|consen 63 LRPDNPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRI 142 (549)
T ss_pred CCcCCCCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhh
Confidence 3335555567778999999999999999999999999999998876 56799999999999999999 899999999998
Q ss_pred E
Q 005698 133 N 133 (682)
Q Consensus 133 ~ 133 (682)
.
T Consensus 143 k 143 (549)
T KOG4660|consen 143 K 143 (549)
T ss_pred c
Confidence 8
No 81
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.44 E-value=4.5e-07 Score=95.22 Aligned_cols=77 Identities=27% Similarity=0.368 Sum_probs=68.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEE--------EEEe-----cCCCeEEEEeCCHHHHHHHH-HcCCceecC
Q 005698 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVE--------CTIT-----DSKHFAYIEYSKPEEATAAL-ALNNMDVGG 129 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~--------v~i~-----~~kg~aFVeF~s~e~A~~Al-~Lng~~l~G 129 (682)
+...+.|||.|||.+||.+++.++|.+||.|.. |+|. ..+|-|+|+|...+++..|| .|++..|.|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 344667999999999999999999999998863 5555 57899999999999999999 899999999
Q ss_pred ceEEEEecccC
Q 005698 130 RPLNVEMAKSF 140 (682)
Q Consensus 130 r~L~V~~a~~~ 140 (682)
+.|+|+.|+..
T Consensus 211 ~~~rVerAkfq 221 (382)
T KOG1548|consen 211 KKLRVERAKFQ 221 (382)
T ss_pred cEEEEehhhhh
Confidence 99999998753
No 82
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.43 E-value=1e-06 Score=87.65 Aligned_cols=78 Identities=27% Similarity=0.306 Sum_probs=66.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe-------cCCCeEEEEeCCHHHHHHHH-HcCCceec---CceE
Q 005698 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT-------DSKHFAYIEYSKPEEATAAL-ALNNMDVG---GRPL 132 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~-------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~---Gr~L 132 (682)
...-+||||.+||.+|..-+|..||..|-.-+.+.|. ..+-+|||+|.+..+|++|+ +|||+.|+ +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 3447899999999999999999999999766665554 13469999999999999999 89999996 6889
Q ss_pred EEEecccCC
Q 005698 133 NVEMAKSFP 141 (682)
Q Consensus 133 ~V~~a~~~~ 141 (682)
+|++|+...
T Consensus 111 hiElAKSNt 119 (284)
T KOG1457|consen 111 HIELAKSNT 119 (284)
T ss_pred EeeehhcCc
Confidence 999998643
No 83
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=4.5e-07 Score=99.32 Aligned_cols=71 Identities=28% Similarity=0.465 Sum_probs=65.5
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe---cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecccCC
Q 005698 68 KTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT---DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKSFP 141 (682)
Q Consensus 68 ~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~---~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~~~ 141 (682)
..|||| +.+|+.+|.++|..+|.|+.|.|+ .+.|||||.|.++.+|+.|| +||...|.|+.|+|-|+...+
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 368999 899999999999999999999987 46799999999999999999 899999999999999987543
No 84
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.38 E-value=3.2e-07 Score=97.70 Aligned_cols=77 Identities=29% Similarity=0.437 Sum_probs=69.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEeccc
Q 005698 66 LKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEMAKS 139 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~a~~ 139 (682)
..++||||+|++.++++.|+++|.+||+|.+|.|+ ..+||+||+|.+.+.+..+|....+.|+|+.|.+..|.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 57899999999999999999999999999999997 477999999999999998887778899999999988876
Q ss_pred CCC
Q 005698 140 FPQ 142 (682)
Q Consensus 140 ~~~ 142 (682)
...
T Consensus 85 r~~ 87 (311)
T KOG4205|consen 85 RED 87 (311)
T ss_pred ccc
Confidence 543
No 85
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.37 E-value=3.8e-07 Score=97.11 Aligned_cols=78 Identities=19% Similarity=0.317 Sum_probs=70.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEeccc
Q 005698 66 LKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEMAKS 139 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~a~~ 139 (682)
...+||||+||+.+++++|+++|.+||.|..+.|+ ..+||+||.|.+.+.+..++.+.-++|+|+.|.|..|.+
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccc
Confidence 35699999999999999999999999999888876 578999999999999999998899999999999998887
Q ss_pred CCCC
Q 005698 140 FPQK 143 (682)
Q Consensus 140 ~~~~ 143 (682)
....
T Consensus 176 k~~~ 179 (311)
T KOG4205|consen 176 KEVM 179 (311)
T ss_pred hhhc
Confidence 6443
No 86
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.19 E-value=6.3e-06 Score=88.31 Aligned_cols=74 Identities=31% Similarity=0.386 Sum_probs=68.0
Q ss_pred CCEEEEeCCC-CCCCHHHHHHHHhcCCCeEEEEEe-cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecccC
Q 005698 67 KKTLQVSNLS-PLLTVEQLRQLFSFCGTVVECTIT-DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKSF 140 (682)
Q Consensus 67 ~~tL~V~NLp-~~vteedL~~~F~~~G~V~~v~i~-~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~~ 140 (682)
..+|.|.||. ..||.+-|..+|+-||.|..|.|. ..+--|+|+|.+...|+.|+ +|+|..|.|+.|+|.+++..
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHT 373 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCc
Confidence 5789999996 789999999999999999999998 45578999999999999999 89999999999999998754
No 87
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.14 E-value=1.8e-06 Score=85.85 Aligned_cols=63 Identities=27% Similarity=0.299 Sum_probs=55.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe--cCCCeEEEEeCCHHHHHHHH-HcCCceec
Q 005698 66 LKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT--DSKHFAYIEYSKPEEATAAL-ALNNMDVG 128 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~--~~kg~aFVeF~s~e~A~~Al-~Lng~~l~ 128 (682)
...||||.||.++|||++|+.+|..|-...-++|. ..-.+|||+|++.+.|..|| .|+|..|.
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcceec
Confidence 46799999999999999999999999877777776 45578999999999999999 89998764
No 88
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.99 E-value=2e-05 Score=71.36 Aligned_cols=68 Identities=25% Similarity=0.441 Sum_probs=44.1
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-Hc--C---CceecCceEEEE
Q 005698 68 KTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-AL--N---NMDVGGRPLNVE 135 (682)
Q Consensus 68 ~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~L--n---g~~l~Gr~L~V~ 135 (682)
..|+|.||+..++.++|+++|..||.|.+|.+...-..|||-|.+.+.|+.|| .+ . +..|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 57899999999999999999999999999999977789999999999999998 43 3 345666665554
No 89
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.98 E-value=3.7e-06 Score=84.84 Aligned_cols=68 Identities=31% Similarity=0.480 Sum_probs=62.5
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEE
Q 005698 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNV 134 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V 134 (682)
...+.|+|.||+..+.|++|.++|..||.+.++.+ ..+++||+|...++|..|| .|+|..|.|+.|.|
T Consensus 97 ~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 97 RTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred cccceeeeccchhhhhHHHHhhhhcccCCCchhhh--hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 34578999999999999999999999999976666 4899999999999999999 89999999999999
No 90
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.94 E-value=3.7e-05 Score=65.94 Aligned_cols=68 Identities=29% Similarity=0.356 Sum_probs=47.8
Q ss_pred CEEEEeCCCCCCCHHH----HHHHHhcCC-CeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEeccc
Q 005698 68 KTLQVSNLSPLLTVEQ----LRQLFSFCG-TVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKS 139 (682)
Q Consensus 68 ~tL~V~NLp~~vteed----L~~~F~~~G-~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~ 139 (682)
..|||.|||.+.+... |+.|+..|| .|..|. .+.|+|.|.+.+.|..|+ .|+|..+.|..|.|.|...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 4799999999888754 567777886 666662 689999999999999999 7999999999999998753
No 91
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.82 E-value=1.7e-05 Score=88.87 Aligned_cols=79 Identities=28% Similarity=0.424 Sum_probs=70.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEec
Q 005698 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMA 137 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a 137 (682)
.....|||+|||..+++.+|.+++..||.+....++ .++||||.+|.+......|+ .|||..+++..|.|+.|
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 345789999999999999999999999999888776 47899999999999999999 89999999999999988
Q ss_pred ccCCCC
Q 005698 138 KSFPQK 143 (682)
Q Consensus 138 ~~~~~~ 143 (682)
......
T Consensus 367 ~~g~~~ 372 (500)
T KOG0120|consen 367 IVGASN 372 (500)
T ss_pred hccchh
Confidence 765443
No 92
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.79 E-value=0.00011 Score=65.48 Aligned_cols=72 Identities=18% Similarity=0.236 Sum_probs=59.5
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhc--CCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceec----CceEEE
Q 005698 68 KTLQVSNLSPLLTVEQLRQLFSF--CGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVG----GRPLNV 134 (682)
Q Consensus 68 ~tL~V~NLp~~vteedL~~~F~~--~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~----Gr~L~V 134 (682)
+||-|.|||..+|.++|.+++.. .|....+.|+ -+.|||||.|.+.+.|..-. .++|..|. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 69999999999999999999975 3666666665 36799999999999999888 89999886 366677
Q ss_pred Eeccc
Q 005698 135 EMAKS 139 (682)
Q Consensus 135 ~~a~~ 139 (682)
.||.-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 77663
No 93
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.78 E-value=6.9e-05 Score=82.37 Aligned_cols=74 Identities=23% Similarity=0.323 Sum_probs=64.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe----cCCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEecccC
Q 005698 66 LKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT----DSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEMAKSF 140 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~----~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~a~~~ 140 (682)
....|-+.+||+.+|++||.+||..++ |..+.|. ...|-|||+|.+.++++.||++|-..+..+-|.|..+...
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGA 86 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCc
Confidence 355677889999999999999999995 6666665 4679999999999999999999999999999999877543
No 94
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.77 E-value=9.5e-06 Score=90.00 Aligned_cols=77 Identities=25% Similarity=0.398 Sum_probs=70.1
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHHHcCCceecCceEEEE
Q 005698 62 KADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVE 135 (682)
Q Consensus 62 ~~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~ 135 (682)
..+-...|||+--|...++.-+|.+||..+|.|..|.|+ ..+|.|||+|.+.+.+..||.|.|..+.|.+|.|.
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq 253 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQ 253 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEec
Confidence 345557899999999999999999999999999999998 47899999999999999999999999999999997
Q ss_pred ecc
Q 005698 136 MAK 138 (682)
Q Consensus 136 ~a~ 138 (682)
...
T Consensus 254 ~sE 256 (549)
T KOG0147|consen 254 LSE 256 (549)
T ss_pred ccH
Confidence 654
No 95
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.70 E-value=0.0001 Score=74.13 Aligned_cols=75 Identities=21% Similarity=0.310 Sum_probs=66.6
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEec-CCCeEEEEeCCHHHHHHHH-HcCCceec-CceEEEEecc
Q 005698 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITD-SKHFAYIEYSKPEEATAAL-ALNNMDVG-GRPLNVEMAK 138 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~-~kg~aFVeF~s~e~A~~Al-~Lng~~l~-Gr~L~V~~a~ 138 (682)
..+..+||+.|||..++.+.|..+|.+|+....|.++. -.++|||+|.+...|..|. .|+|..|- ...|.|.++.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 45678999999999999999999999999999999884 5799999999999999999 89998886 7788887764
No 96
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.64 E-value=0.00011 Score=58.31 Aligned_cols=52 Identities=25% Similarity=0.488 Sum_probs=45.2
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH
Q 005698 68 KTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL 120 (682)
Q Consensus 68 ~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al 120 (682)
+.|-|.|+++...+ +|..+|..||+|+.+.+.....+.||+|.+..+|+.||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 57889999977764 45569999999999999877899999999999999986
No 97
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.61 E-value=9.3e-05 Score=77.65 Aligned_cols=76 Identities=21% Similarity=0.396 Sum_probs=62.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHH------HHHHhcCCCeEEEEEec--------CCCe-EEEEeCCHHHHHHHH-HcCCcee
Q 005698 64 DALKKTLQVSNLSPLLTVEQL------RQLFSFCGTVVECTITD--------SKHF-AYIEYSKPEEATAAL-ALNNMDV 127 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL------~~~F~~~G~V~~v~i~~--------~kg~-aFVeF~s~e~A~~Al-~Lng~~l 127 (682)
.....-|||-+|++.+-.+++ .+||++||.|..|.|.. ...+ .||+|...++|..|| +++|..+
T Consensus 111 VvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~ 190 (480)
T COG5175 111 VVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL 190 (480)
T ss_pred eeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc
Confidence 344678999999988877762 48999999999998861 1113 499999999999999 8999999
Q ss_pred cCceEEEEeccc
Q 005698 128 GGRPLNVEMAKS 139 (682)
Q Consensus 128 ~Gr~L~V~~a~~ 139 (682)
+|+.|++.+...
T Consensus 191 DGr~lkatYGTT 202 (480)
T COG5175 191 DGRVLKATYGTT 202 (480)
T ss_pred cCceEeeecCch
Confidence 999999988653
No 98
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.59 E-value=6.4e-05 Score=76.49 Aligned_cols=76 Identities=17% Similarity=0.337 Sum_probs=65.5
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEE
Q 005698 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVE 135 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~ 135 (682)
.+...-.||+|.|...++.+.|-..|.+|-......++ +.+||+||.|.+..++..|+ +|||..++.+.|.+.
T Consensus 186 w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 186 WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 34556789999999999999999999999766655554 68999999999999999999 999999999998885
Q ss_pred ecc
Q 005698 136 MAK 138 (682)
Q Consensus 136 ~a~ 138 (682)
-..
T Consensus 266 kS~ 268 (290)
T KOG0226|consen 266 KSE 268 (290)
T ss_pred hhh
Confidence 433
No 99
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.58 E-value=6.2e-05 Score=80.09 Aligned_cols=78 Identities=22% Similarity=0.290 Sum_probs=67.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEE--------EEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceec
Q 005698 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVE--------CTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVG 128 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~--------v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~ 128 (682)
.....+|||-+|+..+++++|.+||.+||.|.. |.|. ..++-|.|.|.+...|+.|| -|++..|+
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 455779999999999999999999999998853 3332 47899999999999999999 79999999
Q ss_pred CceEEEEecccCC
Q 005698 129 GRPLNVEMAKSFP 141 (682)
Q Consensus 129 Gr~L~V~~a~~~~ 141 (682)
|..|.|.+|....
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999998886543
No 100
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.55 E-value=0.00035 Score=62.68 Aligned_cols=71 Identities=25% Similarity=0.330 Sum_probs=54.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEE-------------EecCCCeEEEEeCCHHHHHHHHHcCCceecCce-E
Q 005698 67 KKTLQVSNLSPLLTVEQLRQLFSFCGTVVECT-------------ITDSKHFAYIEYSKPEEATAALALNNMDVGGRP-L 132 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~-------------i~~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~-L 132 (682)
..-|.|-++|+. ....|..+|.+||+|++.. +....++..|.|.+..+|..||..||..|.|.. |
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv 84 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV 84 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence 567888899987 4577889999999998885 446778999999999999999999999999864 4
Q ss_pred EEEecc
Q 005698 133 NVEMAK 138 (682)
Q Consensus 133 ~V~~a~ 138 (682)
-|.+++
T Consensus 85 GV~~~~ 90 (100)
T PF05172_consen 85 GVKPCD 90 (100)
T ss_dssp EEEE-H
T ss_pred EEEEcH
Confidence 466664
No 101
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.46 E-value=0.00051 Score=70.16 Aligned_cols=65 Identities=25% Similarity=0.395 Sum_probs=56.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEec---C---------C------CeEEEEeCCHHHHHHHH-HcCCcee
Q 005698 67 KKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITD---S---------K------HFAYIEYSKPEEATAAL-ALNNMDV 127 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~---~---------k------g~aFVeF~s~e~A~~Al-~Lng~~l 127 (682)
.-.|||+|||+.+...-|++||..||+|-.|.|.. . . -.|+|+|.+...|..+. .|||..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 35899999999999999999999999999999861 0 1 13889999999998887 8999999
Q ss_pred cCce
Q 005698 128 GGRP 131 (682)
Q Consensus 128 ~Gr~ 131 (682)
+|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9975
No 102
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.41 E-value=9.2e-05 Score=82.73 Aligned_cols=75 Identities=29% Similarity=0.418 Sum_probs=65.2
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHh-cCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCcee---cCceEEEEeccc
Q 005698 65 ALKKTLQVSNLSPLLTVEQLRQLFS-FCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDV---GGRPLNVEMAKS 139 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~-~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l---~Gr~L~V~~a~~ 139 (682)
...+.|||.||---+|.-+|+.|++ .+|.|+.++|-+.+..|||.|.+.++|...+ +|||+.| +++.|.|.|+..
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~~ 521 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVRA 521 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecch
Confidence 4578999999999999999999999 6777888866577889999999999999999 8999887 458899988764
No 103
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.38 E-value=0.00028 Score=77.77 Aligned_cols=74 Identities=19% Similarity=0.237 Sum_probs=60.5
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEE-EEEe-----cCCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEecc
Q 005698 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVE-CTIT-----DSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEMAK 138 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~-v~i~-----~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~a~ 138 (682)
...-+|-+.+||+.||++||.+||.-.-.|.. |.|+ ...|.|||+|++.+.|+.||.-|...|.-+-|.|..+.
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSS 180 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhH
Confidence 34568889999999999999999997755544 3333 46789999999999999999778888888888886553
No 104
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.34 E-value=0.00016 Score=84.25 Aligned_cols=82 Identities=28% Similarity=0.452 Sum_probs=73.8
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCceecC--ceEEEEeccc
Q 005698 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDVGG--RPLNVEMAKS 139 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l~G--r~L~V~~a~~ 139 (682)
.....+.|||++|.+++....|...|..||.|..|.+-+..-||||.|++...++.|+ .|-|+.|+| +.|.|.|+..
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASP 530 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccC
Confidence 4556789999999999999999999999999999999888899999999999999999 899999997 7899999886
Q ss_pred CCCCC
Q 005698 140 FPQKP 144 (682)
Q Consensus 140 ~~~~~ 144 (682)
....+
T Consensus 531 ~~~~P 535 (975)
T KOG0112|consen 531 PGATP 535 (975)
T ss_pred CCCCh
Confidence 54443
No 105
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.29 E-value=0.00095 Score=71.24 Aligned_cols=76 Identities=25% Similarity=0.298 Sum_probs=67.7
Q ss_pred CCCCCEEEEeCCC-CCCCHHHHHHHHhcCCCeEEEEEec-CCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEeccc
Q 005698 64 DALKKTLQVSNLS-PLLTVEQLRQLFSFCGTVVECTITD-SKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKS 139 (682)
Q Consensus 64 ~~~~~tL~V~NLp-~~vteedL~~~F~~~G~V~~v~i~~-~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~ 139 (682)
......+.|-+|. ..+..+.|..+|..||.|..|.+++ ..|.|+|++.+..+++.|| +|||..|-|.+|.|.+++.
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 3457889999998 4677789999999999999999984 4599999999999999999 8999999999999988774
No 106
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.29 E-value=0.001 Score=70.58 Aligned_cols=77 Identities=16% Similarity=0.187 Sum_probs=64.2
Q ss_pred CCCCCEEEEeCCC----CCCCH-------HHHHHHHhcCCCeEEEEEe--cCCCeEEEEeCCHHHHHHHH-HcCCceecC
Q 005698 64 DALKKTLQVSNLS----PLLTV-------EQLRQLFSFCGTVVECTIT--DSKHFAYIEYSKPEEATAAL-ALNNMDVGG 129 (682)
Q Consensus 64 ~~~~~tL~V~NLp----~~vte-------edL~~~F~~~G~V~~v~i~--~~kg~aFVeF~s~e~A~~Al-~Lng~~l~G 129 (682)
....+||+|.||- +..+. ++|.+-+.+||.|..|.|. ++.|.+.|.|.+.++|..|| .|+|.+|+|
T Consensus 262 ~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdg 341 (382)
T KOG1548|consen 262 ARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDG 341 (382)
T ss_pred ccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecc
Confidence 3457899999984 23342 4556668899999999998 78999999999999999999 899999999
Q ss_pred ceEEEEecccC
Q 005698 130 RPLNVEMAKSF 140 (682)
Q Consensus 130 r~L~V~~a~~~ 140 (682)
+.|...+....
T Consensus 342 Rql~A~i~DG~ 352 (382)
T KOG1548|consen 342 RQLTASIWDGK 352 (382)
T ss_pred eEEEEEEeCCc
Confidence 99999876544
No 107
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.28 E-value=0.00077 Score=65.81 Aligned_cols=62 Identities=19% Similarity=0.287 Sum_probs=55.6
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCceecC
Q 005698 67 KKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDVGG 129 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l~G 129 (682)
...|.|.+||+..+|+||++++...|.|+...+.. -|+++|+|...++++-|| .|+.+.|.-
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~r-Dg~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQR-DGVGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeec-ccceeeeeeehhhHHHHHHhhccccccC
Confidence 35799999999999999999999999999999873 479999999999999999 888877653
No 108
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.24 E-value=0.00024 Score=76.89 Aligned_cols=64 Identities=27% Similarity=0.342 Sum_probs=55.0
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecC-------------------CCeEEEEeCCHHHHHHHHHc
Q 005698 62 KADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDS-------------------KHFAYIEYSKPEEATAALAL 122 (682)
Q Consensus 62 ~~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~-------------------kg~aFVeF~s~e~A~~Al~L 122 (682)
.++.+.+||.|.|||.+-.-+-|.+||+.||.|..|.|+++ +-+|||+|...+.|.+|.+|
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 34457899999999998888999999999999999999832 45799999999999999965
Q ss_pred CCc
Q 005698 123 NNM 125 (682)
Q Consensus 123 ng~ 125 (682)
.+.
T Consensus 306 ~~~ 308 (484)
T KOG1855|consen 306 LNP 308 (484)
T ss_pred hch
Confidence 543
No 109
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.21 E-value=0.00053 Score=74.05 Aligned_cols=74 Identities=22% Similarity=0.362 Sum_probs=59.5
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcC--CCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCC-ceecCceEEEEecccCCCC
Q 005698 68 KTLQVSNLSPLLTVEQLRQLFSFC--GTVVECTITDSKHFAYIEYSKPEEATAAL-ALNN-MDVGGRPLNVEMAKSFPQK 143 (682)
Q Consensus 68 ~tL~V~NLp~~vteedL~~~F~~~--G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng-~~l~Gr~L~V~~a~~~~~~ 143 (682)
..||||||.+.++..+|..+|... |.-..+-| ..||+||.+.+...|..|+ .|+| .++.|.++.|...-+....
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~--k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqr 79 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV--KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQR 79 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee--ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHH
Confidence 469999999999999999999854 22222223 3799999999999999999 7888 6789999999877655443
No 110
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.18 E-value=0.00027 Score=75.01 Aligned_cols=77 Identities=31% Similarity=0.507 Sum_probs=66.7
Q ss_pred CCCEEE-EeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEecc
Q 005698 66 LKKTLQ-VSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEMAK 138 (682)
Q Consensus 66 ~~~tL~-V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~a~ 138 (682)
...++| |+||++.+++++|+.+|..+|.|..|.+. ..+|||||+|.+..++..||..+...|.|+.|.|.+..
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDE 262 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCC
Confidence 345555 99999999999999999999999999987 47899999999999999998447888899999999887
Q ss_pred cCCC
Q 005698 139 SFPQ 142 (682)
Q Consensus 139 ~~~~ 142 (682)
....
T Consensus 263 ~~~~ 266 (285)
T KOG4210|consen 263 PRPK 266 (285)
T ss_pred CCcc
Confidence 6543
No 111
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.13 E-value=0.00089 Score=72.25 Aligned_cols=75 Identities=32% Similarity=0.403 Sum_probs=64.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe--cCCCeEEEEeCCHHHHHHHH-HcCCceecCc-eEEEEeccc
Q 005698 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT--DSKHFAYIEYSKPEEATAAL-ALNNMDVGGR-PLNVEMAKS 139 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~--~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr-~L~V~~a~~ 139 (682)
++..+|.+.|||+.++|++|+.+|..-|.++..... +...+|++.|.+.++|..|+ .|+++.+++. .|+|.|++.
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 455799999999999999999999999876554433 56789999999999999999 8999999874 899999874
No 112
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.07 E-value=0.0024 Score=60.77 Aligned_cols=57 Identities=26% Similarity=0.441 Sum_probs=47.8
Q ss_pred HHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEecccC
Q 005698 82 EQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEMAKSF 140 (682)
Q Consensus 82 edL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~a~~~ 140 (682)
.+|.+.|..||+|+-|++. .+.-+|+|.+-..|.+||.|+|+.|+|+.|.|.+-.+.
T Consensus 51 ~~ll~~~~~~GevvLvRfv--~~~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFV--GDTMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEE--TTCEEEEESSCHHHHHHHHGCCSEETTEEEEEEE----
T ss_pred HHHHHHHHhCCceEEEEEe--CCeEEEEECccHHHHHHHccCCcEECCEEEEEEeCCcc
Confidence 3788899999999999998 46889999999999999999999999999999876543
No 113
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.93 E-value=0.00036 Score=71.38 Aligned_cols=63 Identities=25% Similarity=0.356 Sum_probs=52.6
Q ss_pred HHHHHHHh-cCCCeEEEEEe-----cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecccCCCCC
Q 005698 82 EQLRQLFS-FCGTVVECTIT-----DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKSFPQKP 144 (682)
Q Consensus 82 edL~~~F~-~~G~V~~v~i~-----~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~~~~~~ 144 (682)
++|...|. +||+|+.+.|. +..|-+||.|...++|+.|+ .|||-+|.|++|.+++........
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~re 152 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFRE 152 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchhh
Confidence 45555556 89999999876 46788999999999999999 899999999999999987654443
No 114
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.83 E-value=0.0039 Score=66.72 Aligned_cols=76 Identities=30% Similarity=0.310 Sum_probs=63.0
Q ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHhcCCCeEEEEEe-cCCCeEEEEeCCHHHHHHHH-HcCCceec-C-ceEEEEecc
Q 005698 65 ALKKTLQVSNLS--PLLTVEQLRQLFSFCGTVVECTIT-DSKHFAYIEYSKPEEATAAL-ALNNMDVG-G-RPLNVEMAK 138 (682)
Q Consensus 65 ~~~~tL~V~NLp--~~vteedL~~~F~~~G~V~~v~i~-~~kg~aFVeF~s~e~A~~Al-~Lng~~l~-G-r~L~V~~a~ 138 (682)
.+...|.+.=|. +.||.+.|..++...|.|..|.|. +.---|.|||++.+.|++|. .|||..|. | ..|+|+||+
T Consensus 118 ~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAk 197 (494)
T KOG1456|consen 118 TPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAK 197 (494)
T ss_pred CCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecC
Confidence 345566666554 689999999999999999999987 44456999999999999999 89998876 4 789999998
Q ss_pred cC
Q 005698 139 SF 140 (682)
Q Consensus 139 ~~ 140 (682)
+.
T Consensus 198 P~ 199 (494)
T KOG1456|consen 198 PT 199 (494)
T ss_pred cc
Confidence 64
No 115
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.82 E-value=0.00013 Score=85.16 Aligned_cols=76 Identities=20% Similarity=0.286 Sum_probs=64.3
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe-----cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEe
Q 005698 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT-----DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEM 136 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~-----~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~ 136 (682)
......|||+|||+..+++.+|...|..||.|..|.|. ....||||.|.+...+..|+ .|.+..|..-.+.+.+
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 34456899999999999999999999999999999986 34569999999999999999 8888877765666655
Q ss_pred cc
Q 005698 137 AK 138 (682)
Q Consensus 137 a~ 138 (682)
..
T Consensus 448 G~ 449 (975)
T KOG0112|consen 448 GQ 449 (975)
T ss_pred cc
Confidence 54
No 116
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.75 E-value=0.0039 Score=69.79 Aligned_cols=73 Identities=19% Similarity=0.377 Sum_probs=58.9
Q ss_pred CCCCCEEEEeCCCCCCC--H----HHHHHHHhcCCCeEEEEEe-----cCCCeEEEEeCCHHHHHHHH-HcCCceec-Cc
Q 005698 64 DALKKTLQVSNLSPLLT--V----EQLRQLFSFCGTVVECTIT-----DSKHFAYIEYSKPEEATAAL-ALNNMDVG-GR 130 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vt--e----edL~~~F~~~G~V~~v~i~-----~~kg~aFVeF~s~e~A~~Al-~Lng~~l~-Gr 130 (682)
+.....|+|.|+|.--. . .-|..+|++||+|+.+.++ ..+||.|++|.+..+|+.|+ .|||+.|+ .+
T Consensus 55 eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 55 EGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 35578999999983221 1 3466889999999999987 57899999999999999999 89999887 46
Q ss_pred eEEEEe
Q 005698 131 PLNVEM 136 (682)
Q Consensus 131 ~L~V~~ 136 (682)
.+.|..
T Consensus 135 tf~v~~ 140 (698)
T KOG2314|consen 135 TFFVRL 140 (698)
T ss_pred eEEeeh
Confidence 677754
No 117
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.65 E-value=0.0038 Score=70.37 Aligned_cols=57 Identities=16% Similarity=0.277 Sum_probs=48.2
Q ss_pred HHHHHHhcCCCeEEEEEe---------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEeccc
Q 005698 83 QLRQLFSFCGTVVECTIT---------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKS 139 (682)
Q Consensus 83 dL~~~F~~~G~V~~v~i~---------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~ 139 (682)
+|+.-|..||.|..|.|. ...|..||+|.+.++++.|+ +|+|..|.|+.|.+.|...
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 445556789999999987 24678999999999999999 8999999999988877543
No 118
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.58 E-value=0.0051 Score=68.49 Aligned_cols=59 Identities=22% Similarity=0.280 Sum_probs=52.6
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHh-cCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH
Q 005698 62 KADALKKTLQVSNLSPLLTVEQLRQLFS-FCGTVVECTIT------DSKHFAYIEYSKPEEATAAL 120 (682)
Q Consensus 62 ~~~~~~~tL~V~NLp~~vteedL~~~F~-~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al 120 (682)
..-.+.+|||||+||--++.++|..||. -||.|++|-|- -++|-|=|+|.+...-.+||
T Consensus 365 q~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AI 430 (520)
T KOG0129|consen 365 QPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAI 430 (520)
T ss_pred cccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHH
Confidence 3445679999999999999999999999 89999999885 26889999999999999998
No 119
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.54 E-value=0.005 Score=70.34 Aligned_cols=70 Identities=17% Similarity=0.237 Sum_probs=59.6
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeE-EEEEe-----cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEe
Q 005698 67 KKTLQVSNLSPLLTVEQLRQLFSFCGTVV-ECTIT-----DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEM 136 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~~~G~V~-~v~i~-----~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~ 136 (682)
.++|-|.|+|+.++-+||.+||..|-.+- +|.|. ...|.|.|.|++.++|..|. .|++..|..+.|.|.+
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 45889999999999999999999996553 33333 35689999999999999999 7999999999988864
No 120
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.47 E-value=0.0052 Score=68.43 Aligned_cols=58 Identities=16% Similarity=0.265 Sum_probs=47.6
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe---------cCCC---eEEEEeCCHHHHHHHH
Q 005698 62 KADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT---------DSKH---FAYIEYSKPEEATAAL 120 (682)
Q Consensus 62 ~~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~---------~~kg---~aFVeF~s~e~A~~Al 120 (682)
........||||+||++|+|++|...|..||.|. |++. ..+| |+|+.|+++..++.-|
T Consensus 254 ~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll 323 (520)
T KOG0129|consen 254 RSPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLL 323 (520)
T ss_pred CccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHH
Confidence 3445578999999999999999999999999864 3332 3566 9999999998887766
No 121
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.42 E-value=0.0058 Score=63.56 Aligned_cols=57 Identities=21% Similarity=0.310 Sum_probs=48.3
Q ss_pred HHHHHHHhcCCCeEEEEEec-------CCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecc
Q 005698 82 EQLRQLFSFCGTVVECTITD-------SKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAK 138 (682)
Q Consensus 82 edL~~~F~~~G~V~~v~i~~-------~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~ 138 (682)
+++++-+.+||.|..|.|.. ..--.||+|...++|.+|+ .|||..|+|+.+...|..
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 57788899999999998862 2334799999999999999 899999999988877654
No 122
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.37 E-value=0.0049 Score=66.15 Aligned_cols=75 Identities=19% Similarity=0.152 Sum_probs=61.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCC-eEE--EEEe-----cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEE
Q 005698 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGT-VVE--CTIT-----DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNV 134 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~~G~-V~~--v~i~-----~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V 134 (682)
.....+|-+.+||+..+.+||.+||..|.. |.. |.|+ ...|.|||+|.+.+.|..|. ..+++...++.|.|
T Consensus 277 ~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEv 356 (508)
T KOG1365|consen 277 TRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEV 356 (508)
T ss_pred CCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEE
Confidence 334678999999999999999999999874 322 5554 56799999999999999998 68888888999999
Q ss_pred Eecc
Q 005698 135 EMAK 138 (682)
Q Consensus 135 ~~a~ 138 (682)
..+.
T Consensus 357 fp~S 360 (508)
T KOG1365|consen 357 FPCS 360 (508)
T ss_pred eecc
Confidence 7664
No 123
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.16 E-value=0.0028 Score=69.68 Aligned_cols=75 Identities=19% Similarity=0.209 Sum_probs=63.0
Q ss_pred CCEEEEeCCCCCC-CHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEecccCC
Q 005698 67 KKTLQVSNLSPLL-TVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEMAKSFP 141 (682)
Q Consensus 67 ~~tL~V~NLp~~v-teedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~a~~~~ 141 (682)
.+.|-|.-+++.+ |-++|..+|.+||+|..|.|-...--|+|+|.+..+|-.|...++..|+|+.|+|.|..+..
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCchhhheeeeeccccccchhccccceecCceeEEEEecCCc
Confidence 4555555566544 44899999999999999999755677999999999999999999999999999999988744
No 124
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.79 E-value=0.032 Score=58.50 Aligned_cols=71 Identities=25% Similarity=0.345 Sum_probs=57.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHHHcCCceecCc-eEEEEecc
Q 005698 67 KKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAALALNNMDVGGR-PLNVEMAK 138 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr-~L~V~~a~ 138 (682)
..-|-|-++++.-+ .-|..+|.+||+|+........+|-+|.|....+|++||..||+.|+|. .|-|..|.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhhhcCeeeccceEEeeeecC
Confidence 44566667876543 5688899999999998877777899999999999999999999999984 45565544
No 125
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.77 E-value=0.01 Score=62.96 Aligned_cols=69 Identities=19% Similarity=0.174 Sum_probs=55.8
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCC--eEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEE
Q 005698 67 KKTLQVSNLSPLLTVEQLRQLFSFCGT--VVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVE 135 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~~~G~--V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~ 135 (682)
.-.+|||||-+++|++||.+.+...|. |.++++. +++|||+|...+...+++.+ .|--.+|.|..-.|.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 457999999999999999999988774 3333332 68999999999988888888 688889999765553
No 126
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.70 E-value=0.039 Score=52.19 Aligned_cols=74 Identities=16% Similarity=0.227 Sum_probs=56.5
Q ss_pred CCCCCCEEEEeCCCCCCC----HHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEec
Q 005698 63 ADALKKTLQVSNLSPLLT----VEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMA 137 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vt----eedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a 137 (682)
.+++-.||.|.=|..++. ...|...+..||+|..|.+. .+.-|+|.|.+...|-.|+ +++. ..-|..+.|.|-
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 466678888875554443 34455667789999999987 4677999999999999999 7776 566778888775
Q ss_pred c
Q 005698 138 K 138 (682)
Q Consensus 138 ~ 138 (682)
.
T Consensus 160 q 160 (166)
T PF15023_consen 160 Q 160 (166)
T ss_pred c
Confidence 4
No 127
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.56 E-value=0.0021 Score=75.08 Aligned_cols=76 Identities=18% Similarity=0.197 Sum_probs=67.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe-----cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecccC
Q 005698 67 KKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT-----DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKSF 140 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~-----~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~~ 140 (682)
...|||.|+|+..|.++|+.+|..+|.|..+.++ .++|.|||.|.+..++..++ .+++..+.-..+.|..+.+.
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~ 815 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPE 815 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCc
Confidence 4679999999999999999999999999998876 57899999999999999999 78888888888888876654
Q ss_pred CC
Q 005698 141 PQ 142 (682)
Q Consensus 141 ~~ 142 (682)
..
T Consensus 816 ~~ 817 (881)
T KOG0128|consen 816 RD 817 (881)
T ss_pred cc
Confidence 33
No 128
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.37 E-value=0.012 Score=67.42 Aligned_cols=70 Identities=20% Similarity=0.274 Sum_probs=62.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEec
Q 005698 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMA 137 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a 137 (682)
++.-+|||+||...|..+-++.++..||-|..+.... |||++|.....+..|+ .|+-..++|..|.+...
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 3577999999999999999999999999998887763 9999999999999999 78889999998888764
No 129
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.93 E-value=0.0077 Score=70.30 Aligned_cols=81 Identities=31% Similarity=0.352 Sum_probs=67.2
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCcee--cCceEEEEecccCCCCC
Q 005698 68 KTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDV--GGRPLNVEMAKSFPQKP 144 (682)
Q Consensus 68 ~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l--~Gr~L~V~~a~~~~~~~ 144 (682)
.+.++.|++-..+-.-|..+|..||.|..++....-+.|.|+|...+.|..|+ +|+|.++ .|-+.+|.+|+..+...
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~~e 378 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPMYE 378 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccccccc
Confidence 34455566667788889999999999999999878889999999999999999 8999765 57889999999877655
Q ss_pred CCCC
Q 005698 145 SHLN 148 (682)
Q Consensus 145 ~~~~ 148 (682)
..++
T Consensus 379 p~ln 382 (1007)
T KOG4574|consen 379 PPLN 382 (1007)
T ss_pred CCcC
Confidence 5444
No 130
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=94.90 E-value=0.0022 Score=74.88 Aligned_cols=63 Identities=38% Similarity=0.484 Sum_probs=53.8
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHHHcCCceecCc
Q 005698 68 KTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAALALNNMDVGGR 130 (682)
Q Consensus 68 ~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr 130 (682)
.++||.||++.+.+.+|..+|..||.|..|.|. +.+|+|||+|...+++.+||+++...|.|+
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK 736 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGK 736 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhh
Confidence 468999999999999999999999988777664 578999999999999999996555555553
No 131
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.88 E-value=0.0094 Score=63.46 Aligned_cols=74 Identities=20% Similarity=0.308 Sum_probs=59.6
Q ss_pred CCEEEEeCCCCCCCHHHHH---HHHhcCCCeEEEEEec---------CCCeEEEEeCCHHHHHHHH-HcCCceecCceEE
Q 005698 67 KKTLQVSNLSPLLTVEQLR---QLFSFCGTVVECTITD---------SKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLN 133 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~---~~F~~~G~V~~v~i~~---------~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~ 133 (682)
..-+||-+|++.+-.+.+. ++|++||.|..|.+.. .-.-+||+|...++|..|| ..+|+.++|+.|.
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 4678999999877665553 7899999999998862 1123799999999999999 8999999999988
Q ss_pred EEecccC
Q 005698 134 VEMAKSF 140 (682)
Q Consensus 134 V~~a~~~ 140 (682)
..+....
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 7766543
No 132
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.74 E-value=0.044 Score=54.31 Aligned_cols=74 Identities=20% Similarity=0.169 Sum_probs=48.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhc-CCCe---EEEEEe--------cCCCeEEEEeCCHHHHHHHH-HcCCceecCc--
Q 005698 66 LKKTLQVSNLSPLLTVEQLRQLFSF-CGTV---VECTIT--------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGR-- 130 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~-~G~V---~~v~i~--------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr-- 130 (682)
....|.|.+||+.+||+++.+.+.. +|.. .++.-. ..-.-|||.|.+.+++..-+ .++|+.|.+.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4569999999999999999997776 6655 444421 12245999999999988888 8999888652
Q ss_pred ---eEEEEeccc
Q 005698 131 ---PLNVEMAKS 139 (682)
Q Consensus 131 ---~L~V~~a~~ 139 (682)
...|++|..
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 345666654
No 133
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.64 E-value=0.024 Score=63.57 Aligned_cols=68 Identities=19% Similarity=0.446 Sum_probs=53.6
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHh--cCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCC--ceecCceEEEE
Q 005698 67 KKTLQVSNLSPLLTVEQLRQLFS--FCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALNN--MDVGGRPLNVE 135 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~--~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng--~~l~Gr~L~V~ 135 (682)
.+.|+|.-||..+.+++|+.||. .|-.++.|.+..+.+ =||+|++..||+.|+ .|.. .+|.|+.|...
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-WyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-WYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-eEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 36788889999999999999998 478899998874333 589999999999998 5543 45667665443
No 134
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.62 E-value=0.15 Score=41.84 Aligned_cols=54 Identities=19% Similarity=0.284 Sum_probs=43.1
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcC---CCeEEEEEecCCCeEEEEeCCHHHHHHHH-Hc
Q 005698 67 KKTLQVSNLSPLLTVEQLRQLFSFC---GTVVECTITDSKHFAYIEYSKPEEATAAL-AL 122 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~~~---G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~L 122 (682)
...|+|.||. .++.+||+.||..| .....|.+++. .-|-|.|.+.+.|..|| +|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdD-tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDD-TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecC-CcEEEEECCHHHHHHHHHcC
Confidence 5689999997 68889999999988 23456777633 34889999999999999 54
No 135
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.19 E-value=0.098 Score=52.20 Aligned_cols=62 Identities=24% Similarity=0.338 Sum_probs=47.4
Q ss_pred CHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcC--CceecCceEEEEecccCC
Q 005698 80 TVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALN--NMDVGGRPLNVEMAKSFP 141 (682)
Q Consensus 80 teedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Ln--g~~l~Gr~L~V~~a~~~~ 141 (682)
..+.|..||..|+.+..+.+..+-+=.+|.|.+.++|..|. .|+ ++.|.|..|+|.|+....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 34789999999999998888877777899999999999999 788 999999999999986443
No 136
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=94.11 E-value=0.2 Score=42.35 Aligned_cols=66 Identities=23% Similarity=0.281 Sum_probs=40.6
Q ss_pred EEEEe-CCCCCCCHHHHHHHHhcCC-----CeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEec
Q 005698 69 TLQVS-NLSPLLTVEQLRQLFSFCG-----TVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMA 137 (682)
Q Consensus 69 tL~V~-NLp~~vteedL~~~F~~~G-----~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a 137 (682)
+|||. +--..++..+|..+|...+ .|-.|.|. ..|+||+-... .|..+| .|++..+.|+.|.|+.|
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~--~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIF--DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE---SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEe--eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45553 2236889999999999775 45677777 78999998654 677888 89999999999999865
No 137
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=94.04 E-value=0.029 Score=64.42 Aligned_cols=70 Identities=17% Similarity=0.185 Sum_probs=57.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEE-EEEe-----cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEE
Q 005698 66 LKKTLQVSNLSPLLTVEQLRQLFSFCGTVVE-CTIT-----DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVE 135 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G~V~~-v~i~-----~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~ 135 (682)
...+|||..||..+++.++.++|...-.|++ |.|. ...+.|||.|..++++..|+ .-+-+.++.+.|+|.
T Consensus 433 ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 433 AGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred ccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 3578999999999999999999998888877 6664 35689999999988888888 455566666788885
No 138
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=93.94 E-value=0.043 Score=59.19 Aligned_cols=66 Identities=17% Similarity=0.207 Sum_probs=48.6
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcC----CCeEEEEEe-----cCCCeEEEEeCCHHHHHHHHHcCCceecCceEEE
Q 005698 69 TLQVSNLSPLLTVEQLRQLFSFC----GTVVECTIT-----DSKHFAYIEYSKPEEATAALALNNMDVGGRPLNV 134 (682)
Q Consensus 69 tL~V~NLp~~vteedL~~~F~~~----G~V~~v~i~-----~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V 134 (682)
.|-+.+||+++|+.||.+||..- |.++.|-++ ...|-|||.|..+++|+.||.-|-..|+-+.|.|
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIEl 237 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIEL 237 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHH
Confidence 45566999999999999999732 233444433 3568999999999999999955555555555554
No 139
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=93.30 E-value=0.08 Score=54.58 Aligned_cols=70 Identities=26% Similarity=0.312 Sum_probs=56.1
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe-----cCCCeEEEEeCCHHHHHHHH-Hc--CC--ceecCceEEEEec
Q 005698 68 KTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT-----DSKHFAYIEYSKPEEATAAL-AL--NN--MDVGGRPLNVEMA 137 (682)
Q Consensus 68 ~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~-----~~kg~aFVeF~s~e~A~~Al-~L--ng--~~l~Gr~L~V~~a 137 (682)
..|||.||...+.-+.|...|..||.|....++ ...+-++|+|...-.|..|+ .+ .| .++.+....|...
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 789999999999999999999999999765554 46688999999999999998 44 22 3445666666543
No 140
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=93.23 E-value=0.34 Score=41.97 Aligned_cols=54 Identities=17% Similarity=0.311 Sum_probs=40.8
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcC
Q 005698 67 KKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALN 123 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Ln 123 (682)
...+||+ +|...-..||.++|..||.|.=-.|. ..-|||.+.+.+.|..|+ .++
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~--dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIN--DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEEEEEC--TTEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEEEEEc--CCcEEEEeecHHHHHHHHHHhc
Confidence 3466676 99999999999999999998644454 567999999999999988 564
No 141
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=90.64 E-value=0.22 Score=49.03 Aligned_cols=76 Identities=20% Similarity=0.252 Sum_probs=61.8
Q ss_pred CCCCEEEEeCCCCCCCH-----HHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCceecCc-eEEEEec
Q 005698 65 ALKKTLQVSNLSPLLTV-----EQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDVGGR-PLNVEMA 137 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vte-----edL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr-~L~V~~a 137 (682)
...++|++++|+..+-. .....+|.+|.++..+.+..+.++.-|.|.+.+.|..|. .++++.|.|. .|.+.++
T Consensus 8 dlp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfa 87 (193)
T KOG4019|consen 8 DLPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFA 87 (193)
T ss_pred cccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEc
Confidence 45678899999864433 345678888888887777777788889999999999999 8999999998 8999888
Q ss_pred ccC
Q 005698 138 KSF 140 (682)
Q Consensus 138 ~~~ 140 (682)
...
T Consensus 88 Q~~ 90 (193)
T KOG4019|consen 88 QPG 90 (193)
T ss_pred cCC
Confidence 764
No 142
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=90.28 E-value=0.16 Score=54.06 Aligned_cols=75 Identities=17% Similarity=0.106 Sum_probs=61.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHHHcCC-ceecCceEEEEecc
Q 005698 66 LKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAALALNN-MDVGGRPLNVEMAK 138 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al~Lng-~~l~Gr~L~V~~a~ 138 (682)
..+++||+++...+.+.++..+|..+|.+..+.+. ..++|++|.|...+.+..||++.+ ..+.+..+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 47899999999999999999999999988877654 578999999999999999997777 46666666655544
Q ss_pred cC
Q 005698 139 SF 140 (682)
Q Consensus 139 ~~ 140 (682)
..
T Consensus 167 ~~ 168 (285)
T KOG4210|consen 167 RR 168 (285)
T ss_pred cc
Confidence 43
No 143
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=89.72 E-value=1.8 Score=39.59 Aligned_cols=63 Identities=10% Similarity=0.047 Sum_probs=44.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcC-CCeEEEEEe----cCCCeEEEEeCCHHHHHHHH-HcCCceecC
Q 005698 67 KKTLQVSNLSPLLTVEQLRQLFSFC-GTVVECTIT----DSKHFAYIEYSKPEEATAAL-ALNNMDVGG 129 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~~~-G~V~~v~i~----~~kg~aFVeF~s~e~A~~Al-~Lng~~l~G 129 (682)
...+.+...|..++.++|..|...+ ..|..+.|+ .++-.++|.|.+.+.|..-. .+||..|+.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3444455555555556666555555 366778887 24447899999999999988 899998864
No 144
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.20 E-value=1.3 Score=50.47 Aligned_cols=75 Identities=20% Similarity=0.284 Sum_probs=59.3
Q ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHhcC----CCeEEEEEe--------------c-C---------------------
Q 005698 64 DALKKTLQVSNLSP-LLTVEQLRQLFSFC----GTVVECTIT--------------D-S--------------------- 102 (682)
Q Consensus 64 ~~~~~tL~V~NLp~-~vteedL~~~F~~~----G~V~~v~i~--------------~-~--------------------- 102 (682)
....+.|-|.||.+ .|...||..+|..| |.|..|.|+ + +
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 45678999999995 67789999999976 689999986 0 1
Q ss_pred -----------------CCeEEEEeCCHHHHHHHH-HcCCceecC--ceEEEEecc
Q 005698 103 -----------------KHFAYIEYSKPEEATAAL-ALNNMDVGG--RPLNVEMAK 138 (682)
Q Consensus 103 -----------------kg~aFVeF~s~e~A~~Al-~Lng~~l~G--r~L~V~~a~ 138 (682)
.-||+|+|.+.+.|...+ .++|++|.. ..|-+.|..
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 127999999999999888 899999974 555555543
No 145
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=88.37 E-value=0.81 Score=52.06 Aligned_cols=10 Identities=40% Similarity=0.395 Sum_probs=4.2
Q ss_pred cccCCCCCCC
Q 005698 7 TTTMGTLSQV 16 (682)
Q Consensus 7 ~~s~~~l~~~ 16 (682)
.+++..+.+.
T Consensus 28 ~~~~pp~~q~ 37 (757)
T KOG4368|consen 28 AATMPPLPQP 37 (757)
T ss_pred ccCCCCCCCC
Confidence 3444444443
No 146
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=86.21 E-value=0.86 Score=51.77 Aligned_cols=72 Identities=19% Similarity=0.191 Sum_probs=46.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHh-cCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceec---C-ceEEE
Q 005698 67 KKTLQVSNLSPLLTVEQLRQLFS-FCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVG---G-RPLNV 134 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~-~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~---G-r~L~V 134 (682)
.+|+-|.|++...|-..|...-. ..|.-..+.|+ -+.|||||.|.+.+++..+. ++||+.|. + +.+.|
T Consensus 388 rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~i 467 (549)
T KOG4660|consen 388 RTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASI 467 (549)
T ss_pred hhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeee
Confidence 45666666666655555444422 24544445554 36799999999999999999 89998654 2 34445
Q ss_pred Eecc
Q 005698 135 EMAK 138 (682)
Q Consensus 135 ~~a~ 138 (682)
.||.
T Consensus 468 tYAr 471 (549)
T KOG4660|consen 468 TYAR 471 (549)
T ss_pred ehhh
Confidence 5554
No 147
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.06 E-value=3.2 Score=46.25 Aligned_cols=64 Identities=11% Similarity=0.188 Sum_probs=54.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCC-CeEEEEEe----cCCCeEEEEeCCHHHHHHHH-HcCCceecC
Q 005698 66 LKKTLQVSNLSPLLTVEQLRQLFSFCG-TVVECTIT----DSKHFAYIEYSKPEEATAAL-ALNNMDVGG 129 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G-~V~~v~i~----~~kg~aFVeF~s~e~A~~Al-~Lng~~l~G 129 (682)
..+.|+|-.+|..+|..||..|+..|- .|..|.|+ .+.-.++|.|.+.++|..-. ++||..|+.
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 378999999999999999999999764 67888887 23446889999999999999 899998875
No 148
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=85.92 E-value=0.036 Score=60.34 Aligned_cols=72 Identities=26% Similarity=0.434 Sum_probs=60.9
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe--c-CCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecc
Q 005698 67 KKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT--D-SKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAK 138 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~--~-~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~ 138 (682)
.+.|.|.|||+...|+.|..|+..||.|..|..+ + .....-|+|...+.+..|| .|+|..|....+.|.|-.
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIP 155 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCc
Confidence 4569999999999999999999999999988765 2 2234457899999999999 899999999999987653
No 149
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=83.48 E-value=36 Score=36.12 Aligned_cols=12 Identities=0% Similarity=0.376 Sum_probs=6.3
Q ss_pred ceecCceEEEEe
Q 005698 125 MDVGGRPLNVEM 136 (682)
Q Consensus 125 ~~l~Gr~L~V~~ 136 (682)
..++-+.|.|++
T Consensus 76 k~ldpkkmQiNl 87 (354)
T KOG2146|consen 76 KNLDPKKMQINL 87 (354)
T ss_pred cCCCchheeeee
Confidence 445555555554
No 150
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=81.40 E-value=0.66 Score=48.31 Aligned_cols=62 Identities=23% Similarity=0.417 Sum_probs=44.4
Q ss_pred CCCEEEEeCCCC------------CCCHHHHHHHHhcCCCeEEEEEe----------------cCCCe---------EEE
Q 005698 66 LKKTLQVSNLSP------------LLTVEQLRQLFSFCGTVVECTIT----------------DSKHF---------AYI 108 (682)
Q Consensus 66 ~~~tL~V~NLp~------------~vteedL~~~F~~~G~V~~v~i~----------------~~kg~---------aFV 108 (682)
-..|||+.+||- .-+++-|...|..||.|..|.|+ +..|| |||
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 356888888883 24567899999999999998875 12333 456
Q ss_pred EeCCHHHHHHHH-HcCCcee
Q 005698 109 EYSKPEEATAAL-ALNNMDV 127 (682)
Q Consensus 109 eF~s~e~A~~Al-~Lng~~l 127 (682)
+|........|+ .|.|..|
T Consensus 228 qfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHhHHHHHHHHhcchH
Confidence 676666677777 7777554
No 151
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=80.02 E-value=4 Score=42.95 Aligned_cols=50 Identities=12% Similarity=0.204 Sum_probs=41.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCe-EEEEEecCCCeEEEEeCCHH
Q 005698 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGTV-VECTITDSKHFAYIEYSKPE 114 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~V-~~v~i~~~kg~aFVeF~s~e 114 (682)
...+-|||+||+.++...||+..+.+.|.+ ..|.+....|-||+.|.+..
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCcc
Confidence 345679999999999999999999988854 56666677899999998753
No 152
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=75.78 E-value=1.3 Score=50.02 Aligned_cols=6 Identities=17% Similarity=0.235 Sum_probs=2.3
Q ss_pred eEEEEe
Q 005698 105 FAYIEY 110 (682)
Q Consensus 105 ~aFVeF 110 (682)
++-|-|
T Consensus 160 kstIGf 165 (653)
T KOG2548|consen 160 KSTIGF 165 (653)
T ss_pred cceeee
Confidence 333433
No 153
>PHA00380 tail protein
Probab=75.35 E-value=6.4 Score=44.38 Aligned_cols=31 Identities=19% Similarity=0.378 Sum_probs=21.0
Q ss_pred HHHHHHHhcCC-CeEEEEEe---cCCCeEEEEeCC
Q 005698 82 EQLRQLFSFCG-TVVECTIT---DSKHFAYIEYSK 112 (682)
Q Consensus 82 edL~~~F~~~G-~V~~v~i~---~~kg~aFVeF~s 112 (682)
.-|..||..|| +|..+.|. ...-|-||+|.+
T Consensus 524 ~~lkkyyk~yGYevN~~kis~irSrt~~NYVQ~kg 558 (599)
T PHA00380 524 SKLSGFFKKYGYKSNRVKIPNLRTRTAFNYVQTKD 558 (599)
T ss_pred HHHHHHHHHhceEecceecCcccceeeeeeEEEec
Confidence 35789999999 55555554 234677777764
No 154
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=74.30 E-value=0.95 Score=45.91 Aligned_cols=71 Identities=23% Similarity=0.406 Sum_probs=55.1
Q ss_pred CCCCCEEEEeC----CCCCCCHHHHHHHHhcCCCeEEEEEe-----cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEE
Q 005698 64 DALKKTLQVSN----LSPLLTVEQLRQLFSFCGTVVECTIT-----DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLN 133 (682)
Q Consensus 64 ~~~~~tL~V~N----Lp~~vteedL~~~F~~~G~V~~v~i~-----~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~ 133 (682)
++...+++.|| |...++++.+..+|...|.|..+.+. .+..|+||.|.-....-.|+ ..++..+.-+.+.
T Consensus 77 ~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~~ 156 (267)
T KOG4454|consen 77 DEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKVT 156 (267)
T ss_pred chhhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcCCCCcc
Confidence 34467888898 88899999999999999999999886 36789999998777777777 5666555444433
Q ss_pred E
Q 005698 134 V 134 (682)
Q Consensus 134 V 134 (682)
+
T Consensus 157 ~ 157 (267)
T KOG4454|consen 157 I 157 (267)
T ss_pred c
Confidence 3
No 155
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=73.58 E-value=13 Score=30.97 Aligned_cols=54 Identities=17% Similarity=0.114 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEE
Q 005698 78 LLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNV 134 (682)
Q Consensus 78 ~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V 134 (682)
.++.++|+..+..|+- ..|.. +..| -||.|.+..+|+.++ ..+|+.|.+-.|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~-d~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRD-DRTG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEe-cCCE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 6788999999999974 33333 2233 489999999999999 89999988877654
No 156
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=72.54 E-value=16 Score=39.45 Aligned_cols=15 Identities=13% Similarity=0.087 Sum_probs=9.0
Q ss_pred HHHhcCCCeEEEEEe
Q 005698 86 QLFSFCGTVVECTIT 100 (682)
Q Consensus 86 ~~F~~~G~V~~v~i~ 100 (682)
.++...|-++.|..+
T Consensus 127 ~ILr~LGF~~Hv~hP 141 (367)
T KOG0835|consen 127 RILRELGFDVHVEHP 141 (367)
T ss_pred HHHHHhCCeeeeecc
Confidence 455566666666644
No 157
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.14 E-value=10 Score=41.77 Aligned_cols=60 Identities=20% Similarity=0.287 Sum_probs=48.7
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCe-EEEEEecCCCeEEEEeCCHHHHHHHHHc
Q 005698 62 KADALKKTLQVSNLSPLLTVEQLRQLFSFCGTV-VECTITDSKHFAYIEYSKPEEATAALAL 122 (682)
Q Consensus 62 ~~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V-~~v~i~~~kg~aFVeF~s~e~A~~Al~L 122 (682)
.+......|-|-|+|..+-.+||..+|..||.- ..|.|++ .-.||..|....-|..||.|
T Consensus 386 ~e~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvD-dthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 386 RESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVD-DTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred CcccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEee-cceeEEeecchHHHHHHhhc
Confidence 344578899999999999999999999999753 4455553 45799999999999999976
No 158
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=66.64 E-value=7 Score=36.16 Aligned_cols=56 Identities=14% Similarity=0.144 Sum_probs=30.9
Q ss_pred EEEEeCCCC---------CCCHHHHHHHHhcCCCeEEEEEe---cCCCeEEEEeC-CHHHHHHHHHcCC
Q 005698 69 TLQVSNLSP---------LLTVEQLRQLFSFCGTVVECTIT---DSKHFAYIEYS-KPEEATAALALNN 124 (682)
Q Consensus 69 tL~V~NLp~---------~vteedL~~~F~~~G~V~~v~i~---~~kg~aFVeF~-s~e~A~~Al~Lng 124 (682)
+++|.|++. .++-+.|.+.|..|..+.-..+. ...|+++|+|. +......|+.|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~l~~ 78 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMRLEK 78 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHHHHH
Confidence 566777753 24558999999999887644444 34689999997 5566666765543
No 159
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=58.99 E-value=15 Score=39.02 Aligned_cols=76 Identities=11% Similarity=0.176 Sum_probs=58.2
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCC-------------CeEEEEeCCHHHHHHHH--HcCC---
Q 005698 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSK-------------HFAYIEYSKPEEATAAL--ALNN--- 124 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~k-------------g~aFVeF~s~e~A~~Al--~Lng--- 124 (682)
.+...+.|.+.||...++-..+...|..||.|+.|.|+... ..+.+-|-+.+.|..-. .|+.
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 34456789999999999999999999999999999998433 67889999988776543 1222
Q ss_pred --ceecCceEEEEecc
Q 005698 125 --MDVGGRPLNVEMAK 138 (682)
Q Consensus 125 --~~l~Gr~L~V~~a~ 138 (682)
+.|....|.|.|..
T Consensus 91 fK~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVS 106 (309)
T ss_pred HHHhcCCcceeEEEEE
Confidence 34666778887765
No 160
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=58.67 E-value=11 Score=41.47 Aligned_cols=64 Identities=23% Similarity=0.195 Sum_probs=47.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCC-eEEEEEe--------cCCCeEEEEeCCHHHHHHHH-HcCCceecC
Q 005698 66 LKKTLQVSNLSPLLTVEQLRQLFSFCGT-VVECTIT--------DSKHFAYIEYSKPEEATAAL-ALNNMDVGG 129 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G~-V~~v~i~--------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~G 129 (682)
....|.|.+||+.+++.+|.+-+..|-. |....+. ...++|||.|...+++..-. .++|++|.+
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld 79 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLD 79 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEec
Confidence 3567889999999999999888877643 2222222 23568999999999977766 688877754
No 161
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=57.93 E-value=16 Score=30.10 Aligned_cols=19 Identities=26% Similarity=0.475 Sum_probs=16.3
Q ss_pred HHHHHHHhcCCCeEEEEEe
Q 005698 82 EQLRQLFSFCGTVVECTIT 100 (682)
Q Consensus 82 edL~~~F~~~G~V~~v~i~ 100 (682)
++|+++|+.+|+|.-+.|.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 6899999999999877664
No 162
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=56.55 E-value=13 Score=38.30 Aligned_cols=38 Identities=29% Similarity=0.271 Sum_probs=32.0
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe
Q 005698 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT 100 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~ 100 (682)
......+||+-|||..+|++.|..+..++|-|..+.+.
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y~ 73 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLYN 73 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhheecc
Confidence 34457899999999999999999999999977666543
No 163
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=54.90 E-value=39 Score=40.03 Aligned_cols=11 Identities=9% Similarity=0.365 Sum_probs=5.4
Q ss_pred EEEEeCCHHHH
Q 005698 106 AYIEYSKPEEA 116 (682)
Q Consensus 106 aFVeF~s~e~A 116 (682)
+||.|.+...+
T Consensus 695 ~~~k~~de~~~ 705 (877)
T KOG0151|consen 695 NPVKYDDEDRD 705 (877)
T ss_pred cccccchhhhH
Confidence 55556444333
No 164
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=49.98 E-value=3 Score=47.47 Aligned_cols=64 Identities=16% Similarity=0.283 Sum_probs=51.1
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCc
Q 005698 67 KKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGR 130 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr 130 (682)
.++|||.|++++++..+|..++..+-.+..+-+. ....+++|+|.--..+..|+ +||+..|...
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 4689999999999999999999998777776664 34567899998777777777 7888766543
No 165
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=49.80 E-value=76 Score=35.29 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=27.5
Q ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHhcC----CCeEEEEEe
Q 005698 65 ALKKTLQVSNLSP-LLTVEQLRQLFSFC----GTVVECTIT 100 (682)
Q Consensus 65 ~~~~tL~V~NLp~-~vteedL~~~F~~~----G~V~~v~i~ 100 (682)
.+.+.|-|-||.+ .|...+|..+|..| |.|..|.|+
T Consensus 144 ~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iy 184 (622)
T COG5638 144 NPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIY 184 (622)
T ss_pred CcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEec
Confidence 3567899999985 66778999998865 577777765
No 166
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=49.41 E-value=82 Score=24.81 Aligned_cols=56 Identities=13% Similarity=0.123 Sum_probs=43.3
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCH----HHHHHHHHcCC
Q 005698 69 TLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKP----EEATAALALNN 124 (682)
Q Consensus 69 tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~----e~A~~Al~Lng 124 (682)
||.|.||.=.--...|...+..+-.|..+.+....+.+-|.|... ++...+|.--|
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~G 60 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAG 60 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTT
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhC
Confidence 688888876666788999999998999999887778899999744 55666663333
No 167
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=45.91 E-value=11 Score=40.60 Aligned_cols=12 Identities=50% Similarity=0.327 Sum_probs=4.9
Q ss_pred ccccccCCCCCc
Q 005698 444 NKSKLRGRSRSV 455 (682)
Q Consensus 444 ~~~~~r~rsrs~ 455 (682)
+|.|.-.+.++.
T Consensus 405 ~keks~~r~rsg 416 (453)
T KOG2888|consen 405 NKEKSAVRVRSG 416 (453)
T ss_pred chhhhcceeccc
Confidence 333333344444
No 168
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=45.06 E-value=24 Score=35.13 Aligned_cols=38 Identities=26% Similarity=0.310 Sum_probs=33.3
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe
Q 005698 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT 100 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~ 100 (682)
.......++++|++..++..++..+|..+|.|..+.+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (306)
T COG0724 221 LLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLP 258 (306)
T ss_pred cccccceeeccccccccchhHHHHhccccccceeeecc
Confidence 34456899999999999999999999999999877776
No 169
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=38.65 E-value=41 Score=36.49 Aligned_cols=18 Identities=28% Similarity=0.372 Sum_probs=8.0
Q ss_pred eEEEEeCCHHHHHHHHHc
Q 005698 105 FAYIEYSKPEEATAALAL 122 (682)
Q Consensus 105 ~aFVeF~s~e~A~~Al~L 122 (682)
-.||-|.-..-|-.+|.|
T Consensus 175 ~v~vry~pe~iACaciyL 192 (367)
T KOG0835|consen 175 DVFVRYSPESIACACIYL 192 (367)
T ss_pred ceeeecCHHHHHHHHHHH
Confidence 355555544333333333
No 170
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=38.63 E-value=21 Score=41.71 Aligned_cols=10 Identities=30% Similarity=0.484 Sum_probs=4.2
Q ss_pred CCCCCCCCCC
Q 005698 330 RRKSRSVSPH 339 (682)
Q Consensus 330 RsRSRSrs~~ 339 (682)
+.|++|++++
T Consensus 780 r~R~sSrd~H 789 (878)
T KOG1847|consen 780 RHRDSSRDEH 789 (878)
T ss_pred cccccccCch
Confidence 3344444443
No 171
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=37.70 E-value=2.1e+02 Score=22.85 Aligned_cols=47 Identities=19% Similarity=0.278 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCC-CeEEEEEe--cCCCeEEEEeCCHHHHHHHHHcCCcee
Q 005698 81 VEQLRQLFSFCG-TVVECTIT--DSKHFAYIEYSKPEEATAALALNNMDV 127 (682)
Q Consensus 81 eedL~~~F~~~G-~V~~v~i~--~~kg~aFVeF~s~e~A~~Al~Lng~~l 127 (682)
-.+|-++|.+.| .|.++.+. ...++..|.+.+.+.|..+|.-+|+.+
T Consensus 15 La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~~~G~~v 64 (66)
T cd04908 15 LAAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALKEAGFAV 64 (66)
T ss_pred HHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHHHCCCEE
Confidence 367888898887 67777765 224555556777767777775566554
No 172
>PF14893 PNMA: PNMA
Probab=37.47 E-value=39 Score=36.93 Aligned_cols=48 Identities=8% Similarity=0.164 Sum_probs=33.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhc-CCCeEEEEEe-------cCCCeEEEEeCCH
Q 005698 66 LKKTLQVSNLSPLLTVEQLRQLFSF-CGTVVECTIT-------DSKHFAYIEYSKP 113 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~-~G~V~~v~i~-------~~kg~aFVeF~s~ 113 (682)
..+.|.|.+||.+|++++|++.+.. +-.+-.+.|. .....|||+|...
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~ 72 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAED 72 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccc
Confidence 4678999999999999999988764 2222223332 3455788888743
No 173
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=37.37 E-value=22 Score=41.44 Aligned_cols=45 Identities=18% Similarity=0.344 Sum_probs=27.9
Q ss_pred EEEEe-CCCCCCCHHHHHH----HHhcCCCeEEEEEe----cCCCeEEEEeCCH
Q 005698 69 TLQVS-NLSPLLTVEQLRQ----LFSFCGTVVECTIT----DSKHFAYIEYSKP 113 (682)
Q Consensus 69 tL~V~-NLp~~vteedL~~----~F~~~G~V~~v~i~----~~kg~aFVeF~s~ 113 (682)
.++|+ +||+...-.+|.+ |....|.-.+|.|. .+..|+|+.|.-.
T Consensus 175 ~~p~~~eLPpt~KlH~IIerTaSFV~~~G~Q~EIvlkaKQ~~N~qFgFL~fDH~ 228 (878)
T KOG1847|consen 175 PDPLRQELPPTEKLHQIIERTASFVSKHGGQSEIVLKAKQGDNPQFGFLMFDHH 228 (878)
T ss_pred CCcccccCCchHHHHHHHHHHHHHHhhcCcceEEEeeeccCCCcccceeccccc
Confidence 34444 7777666555543 33455766666554 5678999988753
No 174
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=35.86 E-value=16 Score=39.32 Aligned_cols=12 Identities=25% Similarity=0.135 Sum_probs=6.0
Q ss_pred CccccccccccC
Q 005698 527 GLDESRTKLGRR 538 (682)
Q Consensus 527 ~~~~~~~~~r~~ 538 (682)
.-+.+++|+.-|
T Consensus 421 y~~~sksk~~Eh 432 (453)
T KOG2888|consen 421 YGDASKSKRDEH 432 (453)
T ss_pred ccchhhhhhccc
Confidence 334455555555
No 175
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=35.80 E-value=1e+02 Score=25.68 Aligned_cols=40 Identities=15% Similarity=0.232 Sum_probs=32.1
Q ss_pred HHHHHHHhcCCCeEEEEEecC--CCeEEEEeCCHHHHHHHH-Hc
Q 005698 82 EQLRQLFSFCGTVVECTITDS--KHFAYIEYSKPEEATAAL-AL 122 (682)
Q Consensus 82 edL~~~F~~~G~V~~v~i~~~--kg~aFVeF~s~e~A~~Al-~L 122 (682)
.+|.+++..+| +..+.|... .++.|+-|.+.+.++.++ .|
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHH
Confidence 57788888999 777778766 788999998888888777 44
No 176
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=34.75 E-value=5.3e+02 Score=26.57 Aligned_cols=17 Identities=6% Similarity=0.176 Sum_probs=9.5
Q ss_pred EEeCCHHHHHHHH-HcCC
Q 005698 108 IEYSKPEEATAAL-ALNN 124 (682)
Q Consensus 108 VeF~s~e~A~~Al-~Lng 124 (682)
|+|.+..+...++ +--|
T Consensus 21 LTyRTspd~LrrvFekYG 38 (256)
T KOG4207|consen 21 LTYRTSPDDLRRVFEKYG 38 (256)
T ss_pred eeccCCHHHHHHHHHHhC
Confidence 5666555555555 5444
No 177
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.99 E-value=7.2 Score=43.38 Aligned_cols=71 Identities=3% Similarity=-0.153 Sum_probs=52.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecc
Q 005698 67 KKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAK 138 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~ 138 (682)
....|+..|+...++++|..+|..||-|..+.+. -..-.+||.... .++..+| .|.-..+.|-.++|.++.
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 3456788899999999999999999999988875 133467776654 4566666 566666777777777665
No 178
>PTZ00481 Membrane attack complex/ Perforin (MACPF) Superfamily; Provisional
Probab=33.31 E-value=82 Score=35.51 Aligned_cols=58 Identities=22% Similarity=0.312 Sum_probs=37.9
Q ss_pred EeCCCCCCCHHHHHHHHhcCCCe--EEEEEe---------cCCCeEEEEeC---CHHHHHHHH--HcCCceecC
Q 005698 72 VSNLSPLLTVEQLRQLFSFCGTV--VECTIT---------DSKHFAYIEYS---KPEEATAAL--ALNNMDVGG 129 (682)
Q Consensus 72 V~NLp~~vteedL~~~F~~~G~V--~~v~i~---------~~kg~aFVeF~---s~e~A~~Al--~Lng~~l~G 129 (682)
|..||.....+.-..||..||+- +.+.|- ...-++...|. +.+++..|| +|+|..-.|
T Consensus 210 L~~LP~eYd~g~Y~~FIe~YGTHYITsv~LGG~VE~vTs~RtC~~slps~~~GlS~~qVk~cLn~ELqgn~~~G 283 (524)
T PTZ00481 210 IDALPEDYQPDVYNEFLNAWGTHISVDTFIGGMIEKQTVFKDCVFFTPQFNGGLSPEQVEQALRNELNGNPAEG 283 (524)
T ss_pred HHhcchhcCHHHHHHHHHhcCceEEEEeeEcCEEEEEeehhhhhhhchhhhcCCCHHHHHHHHHHHhcCCCCcc
Confidence 34789899999889999999963 333331 11111222333 778999999 688876555
No 179
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=32.91 E-value=68 Score=37.03 Aligned_cols=59 Identities=22% Similarity=0.299 Sum_probs=44.9
Q ss_pred EEeCCCCCCCH---HHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHHHcCCceecCceE
Q 005698 71 QVSNLSPLLTV---EQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAALALNNMDVGGRPL 132 (682)
Q Consensus 71 ~V~NLp~~vte---edL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L 132 (682)
+||||+.-... ..|..+=.+||.|-.+.|- ..-+|...+.+.|..|+.-+|..|.||..
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG---~~~~Vviss~~~akE~l~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLG---SVPVVVISSYEAAKEVLVKQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEec---CceEEEECCHHHHHHHHHhCCccccCCCC
Confidence 57888743333 4455555689999988773 33578888999999999889999999986
No 180
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=30.61 E-value=3.1e+02 Score=23.35 Aligned_cols=60 Identities=15% Similarity=0.076 Sum_probs=38.7
Q ss_pred EEEEeCCCCCCCHHHHHHHHhc-------CCCeEEEEE--e--cCCCeEEEEeCCHHHHHHHHHcCCceec
Q 005698 69 TLQVSNLSPLLTVEQLRQLFSF-------CGTVVECTI--T--DSKHFAYIEYSKPEEATAALALNNMDVG 128 (682)
Q Consensus 69 tL~V~NLp~~vteedL~~~F~~-------~G~V~~v~i--~--~~kg~aFVeF~s~e~A~~Al~Lng~~l~ 128 (682)
-|...+||..+|.++|..+... +..|.-+.- . ..+-||+.+=.+.+.+..+-...|+.++
T Consensus 2 ymver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~~aG~p~d 72 (77)
T PF14026_consen 2 YMVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHARRAGLPAD 72 (77)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHHHcCCCcc
Confidence 3567789988999999887754 333443332 2 3455666666777777766655576554
No 181
>PLN02971 tryptophan N-hydroxylase
Probab=29.64 E-value=4.4e+02 Score=30.44 Aligned_cols=61 Identities=16% Similarity=0.175 Sum_probs=40.7
Q ss_pred EEEEeCCCCCCC----HHHHHHHHhcCC-CeEEEEEecCCCeEEEEeCCHHHHHHHHHcCCceecCceE
Q 005698 69 TLQVSNLSPLLT----VEQLRQLFSFCG-TVVECTITDSKHFAYIEYSKPEEATAALALNNMDVGGRPL 132 (682)
Q Consensus 69 tL~V~NLp~~vt----eedL~~~F~~~G-~V~~v~i~~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L 132 (682)
--+||||..... ...|.+++.+|| .|..+.+. +.-+|...+.+.++.++.-++..|.++..
T Consensus 65 lPiiGnl~~l~~~~~~~~~l~~~~~~yg~~i~~~~~G---~~~~vvv~dpe~ikevl~~~~~~f~~rp~ 130 (543)
T PLN02971 65 FPIVGMIPAMLKNRPVFRWLHSLMKELNTEIACVRLG---NTHVIPVTCPKIAREIFKQQDALFASRPL 130 (543)
T ss_pred CCcccchHHhccCCcHhHHHHHHHHHhCCceEEEEcC---CcceEEECCHHHHHHHHHhcchhhcCCCc
Confidence 335788753211 245778899999 67666542 33577788999999888656666666653
No 182
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=28.93 E-value=20 Score=39.06 Aligned_cols=45 Identities=16% Similarity=0.101 Sum_probs=37.2
Q ss_pred HHHHHHHHhcCCCeEEEEEe--cCCCeEEEEeCCHHHHHHHH-HcCCc
Q 005698 81 VEQLRQLFSFCGTVVECTIT--DSKHFAYIEYSKPEEATAAL-ALNNM 125 (682)
Q Consensus 81 eedL~~~F~~~G~V~~v~i~--~~kg~aFVeF~s~e~A~~Al-~Lng~ 125 (682)
...|.+++.++|.|..-.|. -+-|.+||-+...++++.++ .|++.
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rtFNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRTFNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHHhcCccceEEEEcHHHHHHHHHHHHhc
Confidence 46788889999988776665 46789999999999999999 67764
No 183
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=28.18 E-value=2.9e+02 Score=22.85 Aligned_cols=59 Identities=17% Similarity=0.152 Sum_probs=42.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCC----HHHHHHHHHcCCc
Q 005698 67 KKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSK----PEEATAALALNNM 125 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s----~e~A~~Al~Lng~ 125 (682)
..+|+|.|+.=..-...+...+...+.|..+.+.-..+-++|.|.+ .++...||.-.|+
T Consensus 3 ~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aGy 65 (71)
T COG2608 3 KTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAGY 65 (71)
T ss_pred eEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcCC
Confidence 3577888876555557888999988889988887667889999987 3444445533343
No 184
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=25.68 E-value=1.1e+02 Score=26.80 Aligned_cols=47 Identities=13% Similarity=0.233 Sum_probs=31.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC--CCeEEEEEe-cCCCeEEEEeCC
Q 005698 66 LKKTLQVSNLSPLLTVEQLRQLFSFC--GTVVECTIT-DSKHFAYIEYSK 112 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~--G~V~~v~i~-~~kg~aFVeF~s 112 (682)
...-|||||++..+-+.-...+.... |.++-+.-. ...||+|-.+.+
T Consensus 24 i~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~G~ 73 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTLGD 73 (86)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEeCC
Confidence 46679999999888876656555544 343333222 567899988843
No 185
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=25.12 E-value=86 Score=27.61 Aligned_cols=47 Identities=15% Similarity=0.160 Sum_probs=30.5
Q ss_pred CCCEEEEeCCCCCCCH---HHHHHHHhcCCCeEEEEEe-cCCCeEEEEeCC
Q 005698 66 LKKTLQVSNLSPLLTV---EQLRQLFSFCGTVVECTIT-DSKHFAYIEYSK 112 (682)
Q Consensus 66 ~~~tL~V~NLp~~vte---edL~~~F~~~G~V~~v~i~-~~kg~aFVeF~s 112 (682)
...-|||||++..+-+ +.|.+.|..-|.++-+.-. ...||+|-++..
T Consensus 24 v~~GVyVg~~s~rVRe~lW~~v~~~~~~~G~avm~~~~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 24 PRAGVYVGGVSASVRERIWDYLAQHCPPKGSLVITWSSNTCPGFEFFTLGE 74 (87)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCCCccEEEEEeCCCCCCcEEEecCC
Confidence 4668999999977765 4455554333555544433 456899888865
No 186
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=24.93 E-value=1.3e+02 Score=26.87 Aligned_cols=51 Identities=18% Similarity=0.234 Sum_probs=33.2
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcC--------CCeEEEEEe-----------cCCC-eEEEEeCCHHHHHHHH
Q 005698 68 KTLQVSNLSPLLTVEQLRQLFSFC--------GTVVECTIT-----------DSKH-FAYIEYSKPEEATAAL 120 (682)
Q Consensus 68 ~tL~V~NLp~~vteedL~~~F~~~--------G~V~~v~i~-----------~~kg-~aFVeF~s~e~A~~Al 120 (682)
-++|| |.+.++++++..++..| |+|..+... ...| |.++.|.-..++...|
T Consensus 9 E~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~el 79 (97)
T CHL00123 9 ETMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSL 79 (97)
T ss_pred eEEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHH
Confidence 36666 66788887776665543 477776643 2334 6788898766666666
No 187
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=24.52 E-value=1.8e+02 Score=25.43 Aligned_cols=51 Identities=10% Similarity=0.060 Sum_probs=36.8
Q ss_pred EEEeCCCCCCCHHHHHHHHhc-CC-CeEEEEEe---cCCCeEEEEeCCHHHHHHHH
Q 005698 70 LQVSNLSPLLTVEQLRQLFSF-CG-TVVECTIT---DSKHFAYIEYSKPEEATAAL 120 (682)
Q Consensus 70 L~V~NLp~~vteedL~~~F~~-~G-~V~~v~i~---~~kg~aFVeF~s~e~A~~Al 120 (682)
.|+-.++...+..+|+..|+. || .|..|..+ ....=|||.|.....|....
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va 78 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIA 78 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHH
Confidence 444457789999999999986 56 66777655 22345999998877776654
No 188
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=23.76 E-value=62 Score=32.23 Aligned_cols=67 Identities=18% Similarity=0.161 Sum_probs=43.8
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CCeEEEEEe-------cCCCeEEEEeCCHHHHHHHHHcCCceecCceEE
Q 005698 62 KADALKKTLQVSNLSPLLTVEQLRQLFSFC-GTVVECTIT-------DSKHFAYIEYSKPEEATAALALNNMDVGGRPLN 133 (682)
Q Consensus 62 ~~~~~~~tL~V~NLp~~vteedL~~~F~~~-G~V~~v~i~-------~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~ 133 (682)
.......++|.. +|+++|.++..-. |.+..|.+. ..+|-.||+|.+.+.|.+.+.-.+..+.-..|.
T Consensus 106 ~~~~~~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~e~~~~e~el~ 180 (205)
T KOG4213|consen 106 KEGIKERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTHEEKGAETELK 180 (205)
T ss_pred HHHHHHhhhhcc-----CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhhhhhccchHHH
Confidence 344456777776 5666665555433 688888875 356889999999999988774444444333333
No 189
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=22.93 E-value=41 Score=31.61 Aligned_cols=68 Identities=13% Similarity=0.134 Sum_probs=46.7
Q ss_pred EEEEeCCC--CCCCHHHHHHHHhc----CCCeEEEEEecCCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEecc
Q 005698 69 TLQVSNLS--PLLTVEQLRQLFSF----CGTVVECTITDSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEMAK 138 (682)
Q Consensus 69 tL~V~NLp--~~vteedL~~~F~~----~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~a~ 138 (682)
...||.+. ..++...|...+.. .|.+.-..| ..++..+.|.+.+++..++......|.|..|.|....
T Consensus 17 ~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l--~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~ 90 (153)
T PF14111_consen 17 LCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL--GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWS 90 (153)
T ss_pred eEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe--CCCeEEEEEEeccceeEEEecccccccccchhhhhhc
Confidence 44555552 23556666666654 444444444 4789999999999999988777788888877776544
No 190
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=22.61 E-value=2.2e+02 Score=24.50 Aligned_cols=51 Identities=10% Similarity=0.051 Sum_probs=36.3
Q ss_pred EEEEeCCCCCCCHHHHHHHHhc-CC-CeEEEEEe---cCCCeEEEEeCCHHHHHHH
Q 005698 69 TLQVSNLSPLLTVEQLRQLFSF-CG-TVVECTIT---DSKHFAYIEYSKPEEATAA 119 (682)
Q Consensus 69 tL~V~NLp~~vteedL~~~F~~-~G-~V~~v~i~---~~kg~aFVeF~s~e~A~~A 119 (682)
.-|+-.++..++..+|+..|+. || .|..|..+ ...-=|||.|.....|...
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~v 70 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEI 70 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHH
Confidence 3556668889999999999986 55 66666654 2233599999876666554
No 191
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=22.19 E-value=1.1e+02 Score=32.10 Aligned_cols=34 Identities=26% Similarity=0.250 Sum_probs=26.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHh--cCCCeEEEEE
Q 005698 66 LKKTLQVSNLSPLLTVEQLRQLFS--FCGTVVECTI 99 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~--~~G~V~~v~i 99 (682)
....++|||||+.++..-|..++. .||.+.-+-|
T Consensus 96 ~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l~ 131 (262)
T PF00398_consen 96 NQPLLVVGNLPYNISSPILRKLLELYRFGRVRMVLM 131 (262)
T ss_dssp SSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEEE
T ss_pred CCceEEEEEecccchHHHHHHHhhcccccccceEEE
Confidence 367899999999999999999987 4555444333
No 192
>COG4874 Uncharacterized protein conserved in bacteria containing a pentein-type domain [Function unknown]
Probab=21.41 E-value=99 Score=32.31 Aligned_cols=54 Identities=24% Similarity=0.116 Sum_probs=35.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCC--CeEEEEEe---------------cCCCeEEEEeCCHHHHHHH
Q 005698 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCG--TVVECTIT---------------DSKHFAYIEYSKPEEATAA 119 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G--~V~~v~i~---------------~~kg~aFVeF~s~e~A~~A 119 (682)
-+.+++|++ |+..++++-|.-|+.+|| .|+..... -...||.|+|....+.+.+
T Consensus 156 h~nr~aY~~-lS~Rad~~lLe~fc~~~gy~~vvf~qT~de~g~PiYHTNVmMaige~favic~~~i~~~~R~ 226 (318)
T COG4874 156 HPNRTAYAG-LSQRADRELLEVFCEQIGYSRVVFFQTRDESGSPIYHTNVMMAIGEHFAVICDEAIPEYERR 226 (318)
T ss_pred ccchhhhhh-hhcccCHHHHHHHHHHcCCceeeeeeeccccCCcceehhHHHHhhhheeeeeccccccHHHH
Confidence 345667765 888888887777777777 44444211 2456899998766555443
No 193
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=21.17 E-value=2.7e+02 Score=29.09 Aligned_cols=69 Identities=12% Similarity=0.136 Sum_probs=40.6
Q ss_pred CCEEEEeCCCCCCCH----HHHHHHHhcCC-CeEEEEEe-cCCCeEEEEe-CCHHHHHHHH-HcCCceecCceEEEE
Q 005698 67 KKTLQVSNLSPLLTV----EQLRQLFSFCG-TVVECTIT-DSKHFAYIEY-SKPEEATAAL-ALNNMDVGGRPLNVE 135 (682)
Q Consensus 67 ~~tL~V~NLp~~vte----edL~~~F~~~G-~V~~v~i~-~~kg~aFVeF-~s~e~A~~Al-~Lng~~l~Gr~L~V~ 135 (682)
...||||+|...+-. +.|..++...+ .|+.+.+. ...|||.-.. .+.++...+| ++.+..|.-..+.|-
T Consensus 37 ~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy~G~Gt~slk~D~edl~~l~~Hi~~~~fSt~vVL~G 113 (299)
T KOG4840|consen 37 VKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSYNGYGTFSLKDDVEDLKCLLEHIQLCGFSTDVVLVG 113 (299)
T ss_pred EEEEEEcccCCCccccccHHHHHHHHhhccceeeeeeccccccccccccccccHHHHHHHHHHhhccCcccceEEEe
Confidence 678999999754322 44555555443 44444443 3345664444 3677777788 677776665444443
No 194
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=20.79 E-value=1.7e+02 Score=29.21 Aligned_cols=53 Identities=17% Similarity=0.003 Sum_probs=38.2
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCC-eEEEEEe----cCCCeEEEEeCCHHHHHHHH
Q 005698 68 KTLQVSNLSPLLTVEQLRQLFSFCGT-VVECTIT----DSKHFAYIEYSKPEEATAAL 120 (682)
Q Consensus 68 ~tL~V~NLp~~vteedL~~~F~~~G~-V~~v~i~----~~kg~aFVeF~s~e~A~~Al 120 (682)
..=||+|.+...+-..|-+.|...|- |+.|.=. .+.++-+|.|.+.+++..++
T Consensus 19 ~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~p~~~~~i~v~sa~em~~~~ 76 (185)
T PF04127_consen 19 PVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPPPPGVKVIRVESAEEMLEAV 76 (185)
T ss_dssp SSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS----TTEEEEE-SSHHHHHHHH
T ss_pred CceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccccccceEEEecchhhhhhhh
Confidence 46789999999999999999998884 3333322 24588899999999999999
Done!