Query 005699
Match_columns 682
No_of_seqs 194 out of 1216
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 04:57:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005699.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005699hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2olm_A Nucleoporin-like protei 100.0 1.1E-38 3.8E-43 300.2 11.1 122 3-124 5-128 (140)
2 2iqj_A Stromal membrane-associ 100.0 4.4E-37 1.5E-41 287.5 7.6 118 4-124 8-128 (134)
3 2crr_A Stromal membrane-associ 100.0 6.6E-37 2.3E-41 288.4 7.4 121 3-126 9-132 (141)
4 3jue_A Arfgap with coiled-coil 100.0 2E-33 6.8E-38 297.7 8.8 125 1-125 23-151 (368)
5 3lju_X ARF-GAP with dual PH do 100.0 2.3E-32 8E-37 292.5 11.4 122 3-125 14-138 (386)
6 2owa_A Arfgap-like finger doma 100.0 3E-31 1E-35 249.2 8.7 112 6-121 19-133 (138)
7 3dwd_A ADP-ribosylation factor 100.0 3.1E-30 1.1E-34 243.8 8.7 88 5-92 20-110 (147)
8 2crw_A ARF GAP 3, ADP-ribosyla 100.0 2.3E-30 7.8E-35 245.8 6.5 92 1-93 8-103 (149)
9 2p57_A GTPase-activating prote 99.9 1.6E-28 5.5E-33 231.8 8.2 108 6-119 20-131 (144)
10 2b0o_E UPLC1; arfgap, structur 99.9 6E-28 2E-32 246.8 11.4 120 5-124 24-147 (301)
11 3sub_A ADP-ribosylation factor 99.9 4.6E-28 1.6E-32 232.1 7.5 109 6-120 4-116 (163)
12 3lvq_E ARF-GAP with SH3 domain 99.9 5.7E-28 1.9E-32 261.6 8.9 122 4-125 4-129 (497)
13 1dcq_A PYK2-associated protein 99.9 1.6E-27 5.4E-32 240.8 9.7 118 8-125 2-123 (278)
14 3o47_A ADP-ribosylation factor 99.9 1.2E-25 4.2E-30 233.9 8.7 89 5-93 19-110 (329)
15 1u5k_A Hypothetical protein; O 84.7 0.98 3.4E-05 44.8 5.3 50 20-82 147-196 (244)
16 2vut_I AREA, nitrogen regulato 56.7 5 0.00017 30.7 1.9 34 24-57 2-36 (43)
17 1gnf_A Transcription factor GA 56.7 5.3 0.00018 31.0 2.1 36 22-57 3-39 (46)
18 1tjl_A DNAK suppressor protein 54.4 11 0.00038 35.6 4.3 34 20-53 108-142 (151)
19 4gat_A Nitrogen regulatory pro 51.5 8.2 0.00028 32.0 2.5 37 21-57 7-44 (66)
20 3dfx_A Trans-acting T-cell-spe 47.9 8.4 0.00029 31.7 2.0 38 20-57 4-42 (63)
21 4hc9_A Trans-acting T-cell-spe 41.4 12 0.00041 33.9 2.2 33 23-55 5-38 (115)
22 1ffk_W Ribosomal protein L37AE 40.8 13 0.00045 31.4 2.2 40 10-51 13-53 (73)
23 2kgo_A Uncharacterized protein 34.1 6.1 0.00021 35.8 -0.9 32 22-53 55-87 (108)
24 1d4u_A Nucleotide excision rep 29.9 10 0.00035 34.4 -0.2 31 22-52 4-35 (111)
25 2zet_C Melanophilin; complex, 29.4 17 0.00057 34.5 1.2 34 22-55 67-105 (153)
26 2kae_A GATA-type transcription 29.2 20 0.00069 30.1 1.5 35 22-57 7-44 (71)
27 3dzy_D Peroxisome proliferator 26.7 27 0.00091 37.6 2.3 31 22-55 49-79 (419)
28 3g9m_A Glucocorticoid receptor 26.4 21 0.00072 30.8 1.2 31 22-55 1-31 (90)
29 1r4i_A Androgen receptor; AR, 24.2 27 0.00092 31.2 1.4 33 20-55 4-36 (105)
30 2han_B Ecdysone receptor; tran 24.0 28 0.00094 31.7 1.5 31 22-55 7-37 (119)
31 2nll_B Protein (thyroid hormon 23.2 32 0.0011 30.6 1.7 29 24-55 2-30 (103)
32 4glq_A Methyl-accepting chemot 22.8 21 0.00073 33.1 0.5 27 66-92 131-157 (171)
33 1hcq_A Protein (estrogen recep 22.6 36 0.0012 29.1 1.9 31 22-55 3-33 (84)
34 2ebl_A COUP transcription fact 22.1 32 0.0011 29.8 1.4 32 21-55 5-36 (89)
35 2kq9_A DNAK suppressor protein 21.2 41 0.0014 30.0 2.1 41 10-51 69-110 (112)
36 1vq8_Z 50S ribosomal protein L 20.4 23 0.00077 30.5 0.1 41 10-52 13-54 (83)
37 3k7a_M Transcription initiatio 20.2 34 0.0011 35.8 1.4 31 24-54 22-53 (345)
No 1
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=100.00 E-value=1.1e-38 Score=300.19 Aligned_cols=122 Identities=40% Similarity=0.758 Sum_probs=115.2
Q ss_pred chhHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhcCC--CceeecccCCCCHHHHHHHHhcC
Q 005699 3 SRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT--HRVKSVSMSKFTSQEVEALQNGG 80 (682)
Q Consensus 3 srk~~Er~ekiLr~Llk~PgNk~CaDCGa~~P~WaSvnfGVFVCi~CSGIHR~LG--hrVKSltLD~Wt~eEV~~Lq~gG 80 (682)
+|+++|+++++|++|++.|+|++|||||+++|+|||+|||||||++|+||||+|| |+||||+||+|++++|++|+.+|
T Consensus 5 ~~~~~e~~~~~l~~l~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~s~VrSl~ld~w~~~~l~~m~~~G 84 (140)
T 2olm_A 5 KRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKSISMTTFTQQEIEFLQKHG 84 (140)
T ss_dssp HHHHHHHHHHHHHHHHTSGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSCCCEEETTTCCCCHHHHHHHHHCH
T ss_pred hHHHHHHHHHHHHHHhcCcCCCcCCCCCCCCCCceeeccCEEEchhccchhccCCCcceeeecCCCCCCHHHHHHHHHhc
Confidence 4688999999999999999999999999999999999999999999999999999 69999999999999999999999
Q ss_pred cHHHHHHHhhcCccccCCCCCCCchHHHHHHHHHHHHhccccCC
Q 005699 81 NQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGG 124 (682)
Q Consensus 81 N~raN~iyea~~d~~~~~~P~~sd~~~rreFIraKY~eKrF~~~ 124 (682)
|.++|++||++++....++|+..+.+.+++||++||++|+|+..
T Consensus 85 N~~an~~~e~~~~~~~~~~P~~~d~~~~~~fIr~KYe~k~f~~~ 128 (140)
T 2olm_A 85 NEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWYVP 128 (140)
T ss_dssp HHHHHHHHTTTCCTTTSCCCCTTCHHHHHHHHHHHHTSCTTCCC
T ss_pred cHHHHHHHHhhCCcccCCCCCCCCHHHHHHHHHHHHcCCeeeCC
Confidence 99999999999987666778777888899999999999999875
No 2
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=100.00 E-value=4.4e-37 Score=287.46 Aligned_cols=118 Identities=30% Similarity=0.603 Sum_probs=104.5
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhcCC---CceeecccCCCCHHHHHHHHhcC
Q 005699 4 RKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSKFTSQEVEALQNGG 80 (682)
Q Consensus 4 rk~~Er~ekiLr~Llk~PgNk~CaDCGa~~P~WaSvnfGVFVCi~CSGIHR~LG---hrVKSltLD~Wt~eEV~~Lq~gG 80 (682)
+++.|+++++|++|++.|+|++|||||+++|+|||+|||||||++|+||||+|| ++||||+||+|++++|++|+.+|
T Consensus 8 ~~~~e~~~~~l~~L~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m~~~G 87 (134)
T 2iqj_A 8 VKDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMG 87 (134)
T ss_dssp -----CCHHHHHHHTTSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHTCH
T ss_pred HhHHHHHHHHHHHHHcCcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHHHHHHHc
Confidence 488899999999999999999999999999999999999999999999999999 49999999999999999999999
Q ss_pred cHHHHHHHhhcCccccCCCCCCCchHHHHHHHHHHHHhccccCC
Q 005699 81 NQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGG 124 (682)
Q Consensus 81 N~raN~iyea~~d~~~~~~P~~sd~~~rreFIraKY~eKrF~~~ 124 (682)
|.++|++||++++.. .+.|.. .+.+++|||+||++|+|+..
T Consensus 88 N~~an~~~e~~lp~~-~~~P~~--~~~~e~fIr~KY~~k~f~~~ 128 (134)
T 2iqj_A 88 NGKANRLYEAYLPET-FRRPQI--DPAVEGFIRDKYEKKKYMDR 128 (134)
T ss_dssp HHHHHHHHTTTCCSS-CCCCCS--HHHHHHHHHHHHTSCTTCCT
T ss_pred hHHHHHHHHhcCCcc-CCCCCc--hHHHHHHHHHHHhCCeeeCC
Confidence 999999999999754 344433 35788999999999999976
No 3
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=6.6e-37 Score=288.43 Aligned_cols=121 Identities=30% Similarity=0.632 Sum_probs=110.0
Q ss_pred chhHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhcCC---CceeecccCCCCHHHHHHHHhc
Q 005699 3 SRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSKFTSQEVEALQNG 79 (682)
Q Consensus 3 srk~~Er~ekiLr~Llk~PgNk~CaDCGa~~P~WaSvnfGVFVCi~CSGIHR~LG---hrVKSltLD~Wt~eEV~~Lq~g 79 (682)
.++++|+++++|++|++.|+|++|||||+++|+|||+|||||||++|+||||+|| +|||||+||+|++++|++|+.+
T Consensus 9 ~~~~~e~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~w~~~~l~~m~~~ 88 (141)
T 2crr_A 9 AQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDM 88 (141)
T ss_dssp TTTTTTCHHHHHHHHHHSGGGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCccCCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCCCCCHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999999999 4999999999999999999999
Q ss_pred CcHHHHHHHhhcCccccCCCCCCCchHHHHHHHHHHHHhccccCCCC
Q 005699 80 GNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGGKT 126 (682)
Q Consensus 80 GN~raN~iyea~~d~~~~~~P~~sd~~~rreFIraKY~eKrF~~~k~ 126 (682)
||.++|++||++++.. .+.|.. .+.+++|||+||++|+|+.+..
T Consensus 89 GN~~an~~~e~~lp~~-~~~P~~--~~~~e~fIr~KY~~k~f~~~~~ 132 (141)
T 2crr_A 89 GNTKARLLYEANLPEN-FRRPQT--DQAVEFFIRDKYEKKKYYDKNA 132 (141)
T ss_dssp HHHHHHHHGGGSCCTT-CCCCCS--HHHHHHHHHHHHTSCTTCCCGG
T ss_pred ccHHHHHHHHhcCCcc-cCCCCc--hHHHHHHHHHHHhcCcccCCCc
Confidence 9999999999999764 344533 3578899999999999997643
No 4
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.98 E-value=2e-33 Score=297.72 Aligned_cols=125 Identities=20% Similarity=0.447 Sum_probs=106.2
Q ss_pred CCchhHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhcCC---CceeecccCCCCHHHHHHHH
Q 005699 1 MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSKFTSQEVEALQ 77 (682)
Q Consensus 1 M~srk~~Er~ekiLr~Llk~PgNk~CaDCGa~~P~WaSvnfGVFVCi~CSGIHR~LG---hrVKSltLD~Wt~eEV~~Lq 77 (682)
|+++|++|+++++|+.|++.++|++|+|||+.+|+|||+|||||||++|+||||.|| +|||||+||+|+.++|++|+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~w~~~~~~~~~ 102 (368)
T 3jue_A 23 MARGREPGGVGHVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMC 102 (368)
T ss_dssp ---------CCCHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHH
T ss_pred ccchhhhhHHHHHHHHHHcCCCcCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeecccccHHHHHHHH
Confidence 567799999999999999999999999999999999999999999999999999998 49999999999999999999
Q ss_pred hcCcHHHHHHHhhcCccccCCCCC-CCchHHHHHHHHHHHHhccccCCC
Q 005699 78 NGGNQRAREIYLKDWDFQRQRLPD-NSNVNKVRDFIKNVYVDRRYAGGK 125 (682)
Q Consensus 78 ~gGN~raN~iyea~~d~~~~~~P~-~sd~~~rreFIraKY~eKrF~~~k 125 (682)
.+||.++|+|||++|+....++|. .++.+.+++||++||++|+|+...
T Consensus 103 ~~gn~~~n~~~e~~~~~~~~~kp~~~~~~~~re~fIr~KY~~k~f~~~l 151 (368)
T 3jue_A 103 ELGNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTKL 151 (368)
T ss_dssp HSCHHHHHHHHTTTTTTTTCCCCCTTSCHHHHHHHHHHHHTSCTTCCSC
T ss_pred HHccHHHHHHHHhhcccccCcCCCCCCCHHHHHHHHHHHHHhhcccccc
Confidence 999999999999999864444454 345667888999999999998763
No 5
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=99.97 E-value=2.3e-32 Score=292.47 Aligned_cols=122 Identities=24% Similarity=0.460 Sum_probs=111.3
Q ss_pred chhHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhcCCC--ceeecccCCCCHHHHHHHHhcC
Q 005699 3 SRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTH--RVKSVSMSKFTSQEVEALQNGG 80 (682)
Q Consensus 3 srk~~Er~ekiLr~Llk~PgNk~CaDCGa~~P~WaSvnfGVFVCi~CSGIHR~LGh--rVKSltLD~Wt~eEV~~Lq~gG 80 (682)
+++++|+++++|++|++.|+|+.|||||+++|+|||+|||||||++||||||+|.| +||||+||+|+.++|++|+.+|
T Consensus 14 ~~~q~~~~~~~l~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l~his~v~s~~ld~w~~~~~~~~~~~g 93 (386)
T 3lju_X 14 LYFQGKERRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNIPQVSKVKSVRLDAWEEAQVEFMASHG 93 (386)
T ss_dssp HHHHHHHHHHHHHHHTTSGGGSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTCTTTCCEEETTTSCCCHHHHHHHHHSS
T ss_pred hhhhhhHHHHHHHHHhcCcCCCcCccCCCCCCCeEEecccEEEhhhhchHhhCCCccceeeeecccCCCHHHHHHHHHhc
Confidence 57999999999999999999999999999999999999999999999999999974 9999999999999999999999
Q ss_pred cHHHHHHHhhcCccccCCCCCCCc-hHHHHHHHHHHHHhccccCCC
Q 005699 81 NQRAREIYLKDWDFQRQRLPDNSN-VNKVRDFIKNVYVDRRYAGGK 125 (682)
Q Consensus 81 N~raN~iyea~~d~~~~~~P~~sd-~~~rreFIraKY~eKrF~~~k 125 (682)
|.++|++||++++.. .++|...+ ...+++|||+||++|+|+...
T Consensus 94 N~~~~~~~e~~~~~~-~~~p~~~~~~~~~e~fIr~KY~~~~f~~~~ 138 (386)
T 3lju_X 94 NDAARARFESKVPSF-YYRPTPSDCQLLREQWIRAKYERQEFIYPE 138 (386)
T ss_dssp HHHHHHHHTTTCCTT-SCCCCTTSCHHHHHHHHHHHHTSCTTTSGG
T ss_pred chHHHHHHhccCCcc-CCCCCCccchHHHHHEHHhhhCCCEEECCc
Confidence 999999999999765 34565544 455778999999999999753
No 6
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=99.97 E-value=3e-31 Score=249.16 Aligned_cols=112 Identities=24% Similarity=0.461 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhcCC-C--ceeecccCCCCHHHHHHHHhcCcH
Q 005699 6 EEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT-H--RVKSVSMSKFTSQEVEALQNGGNQ 82 (682)
Q Consensus 6 ~~Er~ekiLr~Llk~PgNk~CaDCGa~~P~WaSvnfGVFVCi~CSGIHR~LG-h--rVKSltLD~Wt~eEV~~Lq~gGN~ 82 (682)
.++..+++|+.|++.|+|++|+|||+++|+|||+|||||||++|+||||+|| | |||||+||+|++++|++|+.+||.
T Consensus 19 ~~~~~~~l~~~l~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~w~~~~l~~m~~~GN~ 98 (138)
T 2owa_A 19 SDKLRDNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGGNG 98 (138)
T ss_dssp CHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSCCCHHHHHHHHHCCHH
T ss_pred CHHHHHHHHHHHHcCcCCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcCcCCHHHHHHHHhhccH
Confidence 3456778888999999999999999999999999999999999999999998 4 999999999999999999999999
Q ss_pred HHHHHHhhcCccccCCCCCCCchHHHHHHHHHHHHhccc
Q 005699 83 RAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRY 121 (682)
Q Consensus 83 raN~iyea~~d~~~~~~P~~sd~~~rreFIraKY~eKrF 121 (682)
++|++||+++.. .|.....++++.||++||++|.-
T Consensus 99 ~an~~~e~~~~~----~~~~~~~~kY~s~~a~~Y~~kL~ 133 (138)
T 2owa_A 99 RARNYFKQVLGV----NFSPKTKEYASSICGRQYKQILD 133 (138)
T ss_dssp HHHHHHHHHTCT----TCCGGGCHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC----CCCCCHHHHHhhHHHHHHHHHHH
Confidence 999999986432 13344567888899999999853
No 7
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=99.96 E-value=3.1e-30 Score=243.78 Aligned_cols=88 Identities=30% Similarity=0.618 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhcCC---CceeecccCCCCHHHHHHHHhcCc
Q 005699 5 KEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSKFTSQEVEALQNGGN 81 (682)
Q Consensus 5 k~~Er~ekiLr~Llk~PgNk~CaDCGa~~P~WaSvnfGVFVCi~CSGIHR~LG---hrVKSltLD~Wt~eEV~~Lq~gGN 81 (682)
..+++++++|++|++.|+|++|+|||+++|+|||+|||||||++|+||||+|| ++||||+||+|+++||+.|+.+||
T Consensus 20 m~~~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~~m~~~GN 99 (147)
T 3dwd_A 20 MASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGN 99 (147)
T ss_dssp --CHHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHHHHHHCCH
T ss_pred CCCHHHHHHHHHHHcCcCCCccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCccccccccCCCHHHHHHHHHHhh
Confidence 35789999999999999999999999999999999999999999999999998 399999999999999999999999
Q ss_pred HHHHHHHhhcC
Q 005699 82 QRAREIYLKDW 92 (682)
Q Consensus 82 ~raN~iyea~~ 92 (682)
.++|+|||++.
T Consensus 100 ~~an~~~ea~~ 110 (147)
T 3dwd_A 100 AKFREFLESQE 110 (147)
T ss_dssp HHHHHHHHTST
T ss_pred HHHHHHHHhCC
Confidence 99999999864
No 8
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.96 E-value=2.3e-30 Score=245.81 Aligned_cols=92 Identities=25% Similarity=0.589 Sum_probs=85.0
Q ss_pred CCchhHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhcCC-C--ceeecccCC-CCHHHHHHH
Q 005699 1 MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT-H--RVKSVSMSK-FTSQEVEAL 76 (682)
Q Consensus 1 M~srk~~Er~ekiLr~Llk~PgNk~CaDCGa~~P~WaSvnfGVFVCi~CSGIHR~LG-h--rVKSltLD~-Wt~eEV~~L 76 (682)
|... ..++++++|++|++.|+|++|||||+++|+|||+|||||||++|+||||.|| | |||||+||. |++++|++|
T Consensus 8 m~~~-~k~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m 86 (149)
T 2crw_A 8 MGDP-SKQDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCM 86 (149)
T ss_dssp SCCC-CHHHHHHHHHHHHHSTTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHHH
T ss_pred cccC-CHHHHHHHHHHHhcCcCCCcCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHHH
Confidence 4443 3457889999999999999999999999999999999999999999999998 4 999999995 999999999
Q ss_pred HhcCcHHHHHHHhhcCc
Q 005699 77 QNGGNQRAREIYLKDWD 93 (682)
Q Consensus 77 q~gGN~raN~iyea~~d 93 (682)
+.+||.++|+|||+++.
T Consensus 87 ~~~GN~~an~~~e~~~~ 103 (149)
T 2crw_A 87 QVGGNASASSFFHQHGC 103 (149)
T ss_dssp HTTCHHHHHHHHHHHCC
T ss_pred HHHhhHHHHHHHHhcCC
Confidence 99999999999999874
No 9
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.6e-28 Score=231.80 Aligned_cols=108 Identities=20% Similarity=0.510 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhcCC---CceeecccCC-CCHHHHHHHHhcCc
Q 005699 6 EEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSK-FTSQEVEALQNGGN 81 (682)
Q Consensus 6 ~~Er~ekiLr~Llk~PgNk~CaDCGa~~P~WaSvnfGVFVCi~CSGIHR~LG---hrVKSltLD~-Wt~eEV~~Lq~gGN 81 (682)
-+++.+++|+.|++.|+|++|+|||+++|+|+|+|||||||++|+||||+|| ++||||+||. |++++|++|+.+||
T Consensus 20 ~k~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~~W~~~~l~~m~~~GN 99 (144)
T 2p57_A 20 NKTEIQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGN 99 (144)
T ss_dssp CHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCCHHHHHHHHHCCH
T ss_pred CHHHHHHHHHHHhcCCCCCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCCCCCHHHHHHHHHhCH
Confidence 3456788999999999999999999999999999999999999999999998 4999999996 99999999999999
Q ss_pred HHHHHHHhhcCccccCCCCCCCchHHHHHHHHHHHHhc
Q 005699 82 QRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDR 119 (682)
Q Consensus 82 ~raN~iyea~~d~~~~~~P~~sd~~~rreFIraKY~eK 119 (682)
.++|+|||++... ...-.+++...+..+|+++
T Consensus 100 ~~an~~~e~~g~~------~~~~~~KY~s~aA~~Yr~~ 131 (144)
T 2p57_A 100 ANATAFFRQHGCT------ANDANTKYNSRAAQMYREK 131 (144)
T ss_dssp HHHHHHHHHTTCC------CCSHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHHcCCC------CCchhhccCcHHHHHHHHH
Confidence 9999999987321 1112233444566666655
No 10
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.95 E-value=6e-28 Score=246.76 Aligned_cols=120 Identities=26% Similarity=0.516 Sum_probs=107.0
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhcCC---CceeecccCCCCHHHHHHHHhcCc
Q 005699 5 KEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSKFTSQEVEALQNGGN 81 (682)
Q Consensus 5 k~~Er~ekiLr~Llk~PgNk~CaDCGa~~P~WaSvnfGVFVCi~CSGIHR~LG---hrVKSltLD~Wt~eEV~~Lq~gGN 81 (682)
..+++++++|++|++.|+|++|+|||+++|+|+|+|||||||++|+||||.|| ++|||++||.|+.++|.+|+.+||
T Consensus 24 ~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~w~~~~l~~~~~~GN 103 (301)
T 2b0o_E 24 EPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGN 103 (301)
T ss_dssp ---CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHCCH
T ss_pred CHHHHHHHHHHHHhcCCCCCcCCCCCCCCCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcCCCCHHHHHHHHHcCC
Confidence 46778999999999999999999999999999999999999999999999998 499999999999999999999999
Q ss_pred HHHHHHHhhcCccccCCCCC-CCchHHHHHHHHHHHHhccccCC
Q 005699 82 QRAREIYLKDWDFQRQRLPD-NSNVNKVRDFIKNVYVDRRYAGG 124 (682)
Q Consensus 82 ~raN~iyea~~d~~~~~~P~-~sd~~~rreFIraKY~eKrF~~~ 124 (682)
.++|++||+.++......|. .++...+++||++||++++|...
T Consensus 104 ~~~n~i~E~~l~~~~~~kP~~~s~~~~r~~~I~~Ky~~~~f~~~ 147 (301)
T 2b0o_E 104 TSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARR 147 (301)
T ss_dssp HHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTSCTTSCC
T ss_pred HHHHHHHHHhhhhccCCCCCCcccHHHHHHHHHHHHHhhhhhcc
Confidence 99999999998765334443 46678899999999999998765
No 11
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=99.94 E-value=4.6e-28 Score=232.09 Aligned_cols=109 Identities=26% Similarity=0.471 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHhcC-CCCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhcCC-C--ceeecccCCCCHHHHHHHHhcCc
Q 005699 6 EEERNEKIIRGLMKL-PPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT-H--RVKSVSMSKFTSQEVEALQNGGN 81 (682)
Q Consensus 6 ~~Er~ekiLr~Llk~-PgNk~CaDCGa~~P~WaSvnfGVFVCi~CSGIHR~LG-h--rVKSltLD~Wt~eEV~~Lq~gGN 81 (682)
+....+++|++|++. |+|++|+|||+++|+|||++||||||++|+||||.|| | |||||+||.|+.++|++|+.+||
T Consensus 4 m~a~a~~~l~~L~~~~p~N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD~Wt~e~l~~m~~~GN 83 (163)
T 3sub_A 4 MNAAAVEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKGGN 83 (163)
T ss_dssp HHHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTCCCCHHHHHHHHHCCH
T ss_pred ccHHHHHHHHHHHhCCCCCCccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccccCcCHHHHHHHHhhCH
Confidence 567889999999995 7999999999999999999999999999999999999 3 99999999999999999999999
Q ss_pred HHHHHHHhhcCccccCCCCCCCchHHHHHHHHHHHHhcc
Q 005699 82 QRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRR 120 (682)
Q Consensus 82 ~raN~iyea~~d~~~~~~P~~sd~~~rreFIraKY~eKr 120 (682)
.++|++||++..... . -..++..-..++|+++.
T Consensus 84 ~~an~~~e~~g~~~~--~----p~~KY~s~aA~~Yr~~L 116 (163)
T 3sub_A 84 KKCQTYLENYGISDF--I----PERKYRTKAADHYRKIL 116 (163)
T ss_dssp HHHHHHHHHTTCTTS--C----HHHHTTBHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccc--C----hhhcCCCHHHHHHHHHH
Confidence 999999998642210 1 11233335666776654
No 12
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.94 E-value=5.7e-28 Score=261.64 Aligned_cols=122 Identities=25% Similarity=0.497 Sum_probs=108.3
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhcCC---CceeecccCCCCHHHHHHHHhcC
Q 005699 4 RKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSKFTSQEVEALQNGG 80 (682)
Q Consensus 4 rk~~Er~ekiLr~Llk~PgNk~CaDCGa~~P~WaSvnfGVFVCi~CSGIHR~LG---hrVKSltLD~Wt~eEV~~Lq~gG 80 (682)
++.+|.++++|+.|++.|+|+.|+|||+++|+|+|+|+|||||++||||||+|| +||||++||.|+.+++++|+.+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~w~~~~~~l~~~~G 83 (497)
T 3lvq_E 4 GEPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMG 83 (497)
T ss_dssp ----CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGTTTTTCC
T ss_pred chhHHHHHHHHHHHhcCCCCCcccCCCCCCCCEEEechhHHhHHhhHHHHHhhccccceecccccCCCCHHHHHHHHHHh
Confidence 456788999999999999999999999999999999999999999999999998 49999999999999999999999
Q ss_pred cHHHHHHHhhcCccccCCCCC-CCchHHHHHHHHHHHHhccccCCC
Q 005699 81 NQRAREIYLKDWDFQRQRLPD-NSNVNKVRDFIKNVYVDRRYAGGK 125 (682)
Q Consensus 81 N~raN~iyea~~d~~~~~~P~-~sd~~~rreFIraKY~eKrF~~~k 125 (682)
|..+|++||+.++....+.|. .++...+++||++||++++|....
T Consensus 84 N~~an~i~E~~lp~~~~~kP~~~s~~~~re~fIraky~~~~f~~~~ 129 (497)
T 3lvq_E 84 NTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRC 129 (497)
T ss_dssp HHHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred hHHHHHHHHhhcccccCCCCCCcCcHHHHHHHHHHHhhcccccccc
Confidence 999999999999765544554 456677888999999999998753
No 13
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.94 E-value=1.6e-27 Score=240.75 Aligned_cols=118 Identities=30% Similarity=0.535 Sum_probs=107.0
Q ss_pred HHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhcCC---CceeecccCCCCHHHHHHHHhcCcHHH
Q 005699 8 ERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSKFTSQEVEALQNGGNQRA 84 (682)
Q Consensus 8 Er~ekiLr~Llk~PgNk~CaDCGa~~P~WaSvnfGVFVCi~CSGIHR~LG---hrVKSltLD~Wt~eEV~~Lq~gGN~ra 84 (682)
|+++++|++|++.|+|+.|+|||+.+|+|+|+|||||||++|+||||.|| ++|||++||.|+.+++..|+.+||..+
T Consensus 2 ~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~~GN~~~ 81 (278)
T 1dcq_A 2 ELTKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGF 81 (278)
T ss_dssp -CHHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHH
T ss_pred chHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHHcCcHHH
Confidence 67899999999999999999999999999999999999999999999999 499999999999999999999999999
Q ss_pred HHHHhhcCccccCCCCC-CCchHHHHHHHHHHHHhccccCCC
Q 005699 85 REIYLKDWDFQRQRLPD-NSNVNKVRDFIKNVYVDRRYAGGK 125 (682)
Q Consensus 85 N~iyea~~d~~~~~~P~-~sd~~~rreFIraKY~eKrF~~~k 125 (682)
|+|||+.++.....+|. .++...+++||++||+.++|....
T Consensus 82 n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~ 123 (278)
T 1dcq_A 82 NEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKK 123 (278)
T ss_dssp HHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred HHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhccccc
Confidence 99999998765443444 356788899999999999998763
No 14
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.92 E-value=1.2e-25 Score=233.85 Aligned_cols=89 Identities=30% Similarity=0.628 Sum_probs=82.3
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhcCC---CceeecccCCCCHHHHHHHHhcCc
Q 005699 5 KEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSKFTSQEVEALQNGGN 81 (682)
Q Consensus 5 k~~Er~ekiLr~Llk~PgNk~CaDCGa~~P~WaSvnfGVFVCi~CSGIHR~LG---hrVKSltLD~Wt~eEV~~Lq~gGN 81 (682)
..+++++++|++|++.|+|++|||||+++|+|||+|||||||++|+||||+|| ++||||+||+|+.++|++|+.+||
T Consensus 19 ~~~~~~~~~~~~~~~~~~n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~~~~~~~~~~~~~~gN 98 (329)
T 3o47_A 19 MASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGN 98 (329)
T ss_dssp ----CHHHHHHHHHHSTTTTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCHHHHHHHHHCCH
T ss_pred cCCHHHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcCEEeeccccCCCHHHHHHHHHhCc
Confidence 45688999999999999999999999999999999999999999999999998 389999999999999999999999
Q ss_pred HHHHHHHhhcCc
Q 005699 82 QRAREIYLKDWD 93 (682)
Q Consensus 82 ~raN~iyea~~d 93 (682)
.++|++||+...
T Consensus 99 ~~~n~~~e~~~~ 110 (329)
T 3o47_A 99 AKFREFLESQED 110 (329)
T ss_dssp HHHHHHHHTCSS
T ss_pred HHHHHHHHhcCC
Confidence 999999998754
No 15
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=84.72 E-value=0.98 Score=44.83 Aligned_cols=50 Identities=16% Similarity=0.442 Sum_probs=38.1
Q ss_pred CCCCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhcCCCceeecccCCCCHHHHHHHHhcCcH
Q 005699 20 LPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMSKFTSQEVEALQNGGNQ 82 (682)
Q Consensus 20 ~PgNk~CaDCGa~~P~WaSvnfGVFVCi~CSGIHR~LGhrVKSltLD~Wt~eEV~~Lq~gGN~ 82 (682)
.|.=..|+.||.....|.+...|.++|..|...+ .++.+++..|+..-+.
T Consensus 147 ~p~l~~C~~cg~~~~~~fs~~~Gg~~c~~~~~~~-------------~l~~~~l~~l~~l~~~ 196 (244)
T 1u5k_A 147 IPQTARCARCGAPDPEHPDPLGGQLLCSKCAALP-------------PYPPAVLDFLRHAVRR 196 (244)
T ss_dssp CCCCSBCTTTCCBSCCEECTTTSSEECTTTCSSC-------------CCCHHHHHHHHHTTTS
T ss_pred CCCcCccccCCCCCCCcEecccCEEECcccCCCC-------------CCCHHHHHHHHHHHhC
Confidence 3555799999998667889999999999996431 4778888888654443
No 16
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=56.73 E-value=5 Score=30.67 Aligned_cols=34 Identities=18% Similarity=0.318 Sum_probs=28.0
Q ss_pred CCCcCCCCC-CCCeeEecchhhhhhhhhhhhhcCC
Q 005699 24 RRCINCNSL-GPQYVCTNFWTFVCMTCSGIHREFT 57 (682)
Q Consensus 24 k~CaDCGa~-~P~WaSvnfGVFVCi~CSGIHR~LG 57 (682)
+.|++|+.. -|.|-.-..|-.||-.|.-..|.-|
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~ 36 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHG 36 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHS
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHHhC
Confidence 579999985 5899999999999999987655533
No 17
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=56.72 E-value=5.3 Score=30.95 Aligned_cols=36 Identities=22% Similarity=0.548 Sum_probs=30.2
Q ss_pred CCCCCcCCCCC-CCCeeEecchhhhhhhhhhhhhcCC
Q 005699 22 PNRRCINCNSL-GPQYVCTNFWTFVCMTCSGIHREFT 57 (682)
Q Consensus 22 gNk~CaDCGa~-~P~WaSvnfGVFVCi~CSGIHR~LG 57 (682)
..+.|++|++. -|.|-.-..|..||-.|.-.++.-+
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~ 39 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNG 39 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTC
T ss_pred CCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcC
Confidence 56899999985 5899998889999999998776654
No 18
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=54.35 E-value=11 Score=35.64 Aligned_cols=34 Identities=12% Similarity=0.136 Sum_probs=22.1
Q ss_pred CCCCCCCcCCCCCCCC-eeEecchhhhhhhhhhhh
Q 005699 20 LPPNRRCINCNSLGPQ-YVCTNFWTFVCMTCSGIH 53 (682)
Q Consensus 20 ~PgNk~CaDCGa~~P~-WaSvnfGVFVCi~CSGIH 53 (682)
...-..|.+||..=|. =.-.--++-.|+.|...|
T Consensus 108 ~g~yg~C~~Cg~~Ip~~Rl~a~P~a~~Ci~Cq~~~ 142 (151)
T 1tjl_A 108 DEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLA 142 (151)
T ss_dssp TTCCSBCSSSSCBCCHHHHHHCTTCCSCHHHHHHH
T ss_pred CCCCceeCCCCCcchHHHHhcCCCcchhHHHHHHH
Confidence 3566899999985321 011122577899999875
No 19
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=51.51 E-value=8.2 Score=32.04 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=30.9
Q ss_pred CCCCCCcCCCCC-CCCeeEecchhhhhhhhhhhhhcCC
Q 005699 21 PPNRRCINCNSL-GPQYVCTNFWTFVCMTCSGIHREFT 57 (682)
Q Consensus 21 PgNk~CaDCGa~-~P~WaSvnfGVFVCi~CSGIHR~LG 57 (682)
.....|++|+.. -|.|-.-.-|-.||-.|.-..+..+
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~ 44 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHG 44 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcC
Confidence 456899999985 5899998899999999987766654
No 20
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=47.92 E-value=8.4 Score=31.74 Aligned_cols=38 Identities=16% Similarity=0.255 Sum_probs=31.3
Q ss_pred CCCCCCCcCCCCC-CCCeeEecchhhhhhhhhhhhhcCC
Q 005699 20 LPPNRRCINCNSL-GPQYVCTNFWTFVCMTCSGIHREFT 57 (682)
Q Consensus 20 ~PgNk~CaDCGa~-~P~WaSvnfGVFVCi~CSGIHR~LG 57 (682)
......|++|+.. -|.|=.-..|-.||-.|.-..+..+
T Consensus 4 ~~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~ 42 (63)
T 3dfx_A 4 RRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHN 42 (63)
T ss_dssp CCTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHS
T ss_pred CCCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcC
Confidence 3467899999985 5899998899999999987766654
No 21
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=41.42 E-value=12 Score=33.95 Aligned_cols=33 Identities=24% Similarity=0.653 Sum_probs=27.2
Q ss_pred CCCCcCCCCC-CCCeeEecchhhhhhhhhhhhhc
Q 005699 23 NRRCINCNSL-GPQYVCTNFWTFVCMTCSGIHRE 55 (682)
Q Consensus 23 Nk~CaDCGa~-~P~WaSvnfGVFVCi~CSGIHR~ 55 (682)
-+.|++||+. -|.|-.-..|-+||-.|.-.++.
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl 38 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKM 38 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHH
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhhh
Confidence 4789999985 59999988899999999876543
No 22
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=40.85 E-value=13 Score=31.45 Aligned_cols=40 Identities=18% Similarity=0.285 Sum_probs=30.6
Q ss_pred HHHHHHHH-hcCCCCCCCcCCCCCCCCeeEecchhhhhhhhhh
Q 005699 10 NEKIIRGL-MKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSG 51 (682)
Q Consensus 10 ~ekiLr~L-lk~PgNk~CaDCGa~~P~WaSvnfGVFVCi~CSG 51 (682)
.++.++++ ........|.-||........ .||+.|..|--
T Consensus 13 lRK~vkkie~~q~~ky~C~fCgk~~vkR~a--~GIW~C~~C~~ 53 (73)
T 1ffk_W 13 IRVRVRDVEIKHKKKYKCPVCGFPKLKRAS--TSIWVCGHCGY 53 (73)
T ss_pred HHHHHHHHHHhcccCccCCCCCCceeEEEE--eEEEECCCCCc
Confidence 45666666 557788999999987666554 59999999964
No 23
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=34.15 E-value=6.1 Score=35.76 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=20.7
Q ss_pred CCCCCcCCCCCCCC-eeEecchhhhhhhhhhhh
Q 005699 22 PNRRCINCNSLGPQ-YVCTNFWTFVCMTCSGIH 53 (682)
Q Consensus 22 gNk~CaDCGa~~P~-WaSvnfGVFVCi~CSGIH 53 (682)
.-..|.+||.+=|. -.-.--++..|+.|...+
T Consensus 55 syG~C~~CGe~Ip~~RL~A~P~a~~Cv~Cq~~~ 87 (108)
T 2kgo_A 55 SLDECEECGAPIPQARREAIPGVRLCIHCQQEK 87 (108)
T ss_dssp CCSBCTTTCCBCCHHHHHHSTTCCSCHHHHHHH
T ss_pred cCceecccCCcccHHHHhcCCCccccHHHHHHH
Confidence 35799999985321 111222577899999865
No 24
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=29.88 E-value=10 Score=34.41 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=24.0
Q ss_pred CCCCCcCCCCCCCC-eeEecchhhhhhhhhhh
Q 005699 22 PNRRCINCNSLGPQ-YVCTNFWTFVCMTCSGI 52 (682)
Q Consensus 22 gNk~CaDCGa~~P~-WaSvnfGVFVCi~CSGI 52 (682)
+...|.+||...-. |..-+|++-||..|...
T Consensus 4 ~~~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~ 35 (111)
T 1d4u_A 4 DYVICEECGKEFMDSYLMDHFDLPTCDDCRDA 35 (111)
T ss_dssp CCEECTTTCCEESCSSSTTTTSCCCCTTTCSS
T ss_pred CCCccccCCChhhHHHHHHhCCeeechhhccc
Confidence 45679999986433 34569999999999865
No 25
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=29.41 E-value=17 Score=34.53 Aligned_cols=34 Identities=29% Similarity=0.635 Sum_probs=25.8
Q ss_pred CCCCCcCCCCC-----CCCeeEecchhhhhhhhhhhhhc
Q 005699 22 PNRRCINCNSL-----GPQYVCTNFWTFVCMTCSGIHRE 55 (682)
Q Consensus 22 gNk~CaDCGa~-----~P~WaSvnfGVFVCi~CSGIHR~ 55 (682)
+.+.|+-|+.. +..-.|..=...||..|...+|.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~~ 105 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHPE 105 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCSS
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccccccCC
Confidence 57899999985 55566666677889999876654
No 26
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=29.23 E-value=20 Score=30.12 Aligned_cols=35 Identities=17% Similarity=0.385 Sum_probs=26.7
Q ss_pred CCCCCcCCCCC-CCCeeE--ecchhhhhhhhhhhhhcCC
Q 005699 22 PNRRCINCNSL-GPQYVC--TNFWTFVCMTCSGIHREFT 57 (682)
Q Consensus 22 gNk~CaDCGa~-~P~WaS--vnfGVFVCi~CSGIHR~LG 57 (682)
....|++|+.. -|.|-. -.-| .||-.|.-.+|..+
T Consensus 7 ~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~~ 44 (71)
T 2kae_A 7 KSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKYN 44 (71)
T ss_dssp -CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHHH
T ss_pred CCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHhC
Confidence 45899999985 589988 5667 79999987665543
No 27
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=26.69 E-value=27 Score=37.61 Aligned_cols=31 Identities=19% Similarity=0.486 Sum_probs=25.3
Q ss_pred CCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhc
Q 005699 22 PNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHRE 55 (682)
Q Consensus 22 gNk~CaDCGa~~P~WaSvnfGVFVCi~CSGIHR~ 55 (682)
.+..|.=||...-. ..|||..|..|++..|.
T Consensus 49 ~~~~C~vC~~~~~g---~hygv~~C~~C~~FFrR 79 (419)
T 3dzy_D 49 MAIECRVCGDKASG---FHYGVHACEGCKGFFRR 79 (419)
T ss_dssp -CCCCSSSCSCCCS---BCSSSBCCHHHHHHHHH
T ss_pred CCCcCeECCCcCCC---CccCcccchhhhHHHcc
Confidence 46789999987644 48999999999998765
No 28
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=26.40 E-value=21 Score=30.80 Aligned_cols=31 Identities=13% Similarity=0.484 Sum_probs=24.9
Q ss_pred CCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhc
Q 005699 22 PNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHRE 55 (682)
Q Consensus 22 gNk~CaDCGa~~P~WaSvnfGVFVCi~CSGIHR~ 55 (682)
|++.|.=||.... ...|||+.|..|.+..|-
T Consensus 1 g~~~C~VCg~~a~---g~hyGv~sC~~Ck~FFRR 31 (90)
T 3g9m_A 1 GSHMCLVCSDEAS---GCHYGVLTCGSCKVFFKR 31 (90)
T ss_dssp -CCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCcCccCCCcCc---ccccCCccchhHhHHhhh
Confidence 5788999997643 468999999999998764
No 29
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=24.21 E-value=27 Score=31.21 Aligned_cols=33 Identities=18% Similarity=0.670 Sum_probs=26.1
Q ss_pred CCCCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhc
Q 005699 20 LPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHRE 55 (682)
Q Consensus 20 ~PgNk~CaDCGa~~P~WaSvnfGVFVCi~CSGIHR~ 55 (682)
.+..+.|.=||... ....|||+.|..|++..|-
T Consensus 4 ~~~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 36 (105)
T 1r4i_A 4 FPPQKTCLICGDEA---SGAHYGALTCGSCKVFFKR 36 (105)
T ss_dssp --CCCBCSSSCSBE---EEEETTEEEEHHHHHHHHH
T ss_pred CCCCCCCcEeCCCC---CceEeCCcchhhhhhhhce
Confidence 35678999999753 3578999999999998875
No 30
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=24.02 E-value=28 Score=31.73 Aligned_cols=31 Identities=19% Similarity=0.604 Sum_probs=25.9
Q ss_pred CCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhc
Q 005699 22 PNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHRE 55 (682)
Q Consensus 22 gNk~CaDCGa~~P~WaSvnfGVFVCi~CSGIHR~ 55 (682)
.+..|.=||.... ...|||+.|..|++..|-
T Consensus 7 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 37 (119)
T 2han_B 7 QEELCLVCGDRAS---GYHYNALTCEGCKGFFRR 37 (119)
T ss_dssp CSCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCcCeEeCCcCC---cceECchhHHhhHHhhhh
Confidence 4678999997642 579999999999998875
No 31
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=23.20 E-value=32 Score=30.57 Aligned_cols=29 Identities=21% Similarity=0.637 Sum_probs=23.8
Q ss_pred CCCcCCCCCCCCeeEecchhhhhhhhhhhhhc
Q 005699 24 RRCINCNSLGPQYVCTNFWTFVCMTCSGIHRE 55 (682)
Q Consensus 24 k~CaDCGa~~P~WaSvnfGVFVCi~CSGIHR~ 55 (682)
..|.=||.... ...|||+.|..|++..|-
T Consensus 2 ~~C~VCgd~a~---g~hyGv~sC~aCk~FFRR 30 (103)
T 2nll_B 2 ELCVVCGDKAT---GYHYRCITCEGCKGFFRR 30 (103)
T ss_dssp CBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCeEeCCcCc---CeecCcccHHHhhhhhee
Confidence 57999997643 468999999999998775
No 32
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=22.76 E-value=21 Score=33.08 Aligned_cols=27 Identities=4% Similarity=0.105 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHhcCcHHHHHHHhhcC
Q 005699 66 SKFTSQEVEALQNGGNQRAREIYLKDW 92 (682)
Q Consensus 66 D~Wt~eEV~~Lq~gGN~raN~iyea~~ 92 (682)
-.|+++|+++|+..++..+-.+-.+.+
T Consensus 131 r~w~~~ei~ll~~lA~ql~iAi~qa~l 157 (171)
T 4glq_A 131 RQWQEIEIDQFSELASTGSLVLERLHF 157 (171)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 369999999999999999988876654
No 33
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=22.57 E-value=36 Score=29.15 Aligned_cols=31 Identities=19% Similarity=0.577 Sum_probs=25.8
Q ss_pred CCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhc
Q 005699 22 PNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHRE 55 (682)
Q Consensus 22 gNk~CaDCGa~~P~WaSvnfGVFVCi~CSGIHR~ 55 (682)
+...|.=||.... ...|||+.|..|++..|-
T Consensus 3 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 33 (84)
T 1hcq_A 3 ETRYCAVCNDYAS---GYHYGVWSCEGCKAFFKR 33 (84)
T ss_dssp CCCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCcCcEECCCCC---CeeeCccchHHhhhhhhh
Confidence 5678999997642 579999999999998875
No 34
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=22.09 E-value=32 Score=29.82 Aligned_cols=32 Identities=16% Similarity=0.568 Sum_probs=26.2
Q ss_pred CCCCCCcCCCCCCCCeeEecchhhhhhhhhhhhhc
Q 005699 21 PPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHRE 55 (682)
Q Consensus 21 PgNk~CaDCGa~~P~WaSvnfGVFVCi~CSGIHR~ 55 (682)
+.+..|.=||.... ...|||+.|..|++..|-
T Consensus 5 ~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 36 (89)
T 2ebl_A 5 SSGIECVVCGDKSS---GKHYGQFTCEGCKSFFKR 36 (89)
T ss_dssp CSSCBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCCCCcEeCCCCc---ceEeCchhhHHhhhhhhe
Confidence 45678999998654 468999999999998875
No 35
>2kq9_A DNAK suppressor protein; zinc binding protein, structural genomics, PSI-2, protein ST initiative; NMR {Agrobacterium tumefaciens str}
Probab=21.24 E-value=41 Score=29.96 Aligned_cols=41 Identities=12% Similarity=0.287 Sum_probs=23.9
Q ss_pred HHHHHHHHhcCCCCCCCcCCCCCCCC-eeEecchhhhhhhhhh
Q 005699 10 NEKIIRGLMKLPPNRRCINCNSLGPQ-YVCTNFWTFVCMTCSG 51 (682)
Q Consensus 10 ~ekiLr~Llk~PgNk~CaDCGa~~P~-WaSvnfGVFVCi~CSG 51 (682)
.+.+|.++- ...-..|.+||..=|. -.-.--++-.|+.|..
T Consensus 69 i~~Al~ri~-~g~yg~C~~Cg~~I~~~Rl~a~P~a~~Ci~Cq~ 110 (112)
T 2kq9_A 69 IDAALARIA-SGTFGTCVKCGKRISEDRLKAVPYTPFCQECAA 110 (112)
T ss_dssp HHHHHHHHH-HTCCSEETTTTEECCHHHHHHCSCCSSCHHHHH
T ss_pred HHHHHHhhh-CCCcCeeCCCCCcccHHHHhcCCCcchhHHHHh
Confidence 444454543 4567899999985221 0011125668999975
No 36
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=20.38 E-value=23 Score=30.55 Aligned_cols=41 Identities=12% Similarity=0.263 Sum_probs=27.8
Q ss_pred HHHHHHHH-hcCCCCCCCcCCCCCCCCeeEecchhhhhhhhhhh
Q 005699 10 NEKIIRGL-MKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGI 52 (682)
Q Consensus 10 ~ekiLr~L-lk~PgNk~CaDCGa~~P~WaSvnfGVFVCi~CSGI 52 (682)
.++.++++ ......-.|..||...- -....|++.|..|-..
T Consensus 13 lRk~vk~ie~~q~~~y~Cp~CG~~~v--~r~atGiW~C~~Cg~~ 54 (83)
T 1vq8_Z 13 SRRRVAEIESEMNEDHACPNCGEDRV--DRQGTGIWQCSYCDYK 54 (83)
T ss_dssp HHHHHHHHHHHHHSCEECSSSCCEEE--EEEETTEEEETTTCCE
T ss_pred HHHHHHHHHHhccccCcCCCCCCcce--eccCCCeEECCCCCCE
Confidence 34555555 44556889999998432 2345789999999753
No 37
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=20.18 E-value=34 Score=35.85 Aligned_cols=31 Identities=23% Similarity=0.420 Sum_probs=22.6
Q ss_pred CCCcCCCCCCCCee-Eecchhhhhhhhhhhhh
Q 005699 24 RRCINCNSLGPQYV-CTNFWTFVCMTCSGIHR 54 (682)
Q Consensus 24 k~CaDCGa~~P~Wa-SvnfGVFVCi~CSGIHR 54 (682)
..|-+||...|.-+ ...-|-.||.+|.-|..
T Consensus 22 ~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~ 53 (345)
T 3k7a_M 22 LTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (345)
T ss_dssp CCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCC
T ss_pred CcCcCCCCCCCceEEECCCCCEecCCCCeEcc
Confidence 57999999754222 34568999999988753
Done!