BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005700
         (682 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4HG6|A Chain A, Structure Of A Cellulose Synthase - Cellulose
           Translocation Intermediate
          Length = 802

 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 142/309 (45%), Gaps = 29/309 (9%)

Query: 174 CIVLFLIQSLDRLILCLGCFWIRFKRIKPVPKHDDTSDLESGQKGFFPMVLVQIPMCNE- 232
            ++LF +++    I  L  F       +P P+     +L        P V + +P  NE 
Sbjct: 101 ALLLFAVETFSISIFFLNGFLSADPTDRPFPRPLQPEEL--------PTVDILVPSYNEP 152

Query: 233 KEVYQQSIAAVCNLDWPKSKILIQVLDD--------SDDPTAQTLIKEEVLKWQE--AGA 282
            ++   ++AA  N+ +P     + + DD        S DP      +E   + Q+     
Sbjct: 153 ADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMSPDPELAQKAQERRRELQQLCREL 212

Query: 283 NIVYRHRILRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEEL 342
            +VY  R   +  KAGN+ +A+    +K  E V +FDAD  P+ DFL RTV +F ++ +L
Sbjct: 213 GVVYSTRERNEHAKAGNMSAALE--RLKG-ELVVVFDADHVPSRDFLARTVGYFVEDPDL 269

Query: 343 GLVQARWSFVNKDE-----NLLTRLQDINLSFHFEVEQQXXXXXXXXXXXXXTAGVWRIK 397
            LVQ    F+N D       L  R    N  F+ ++ +              +A V R +
Sbjct: 270 FLVQTPHFFINPDPIQRNLALGDRCPPENEMFYGKIHRGLDRWGGAFFCG--SAAVLRRR 327

Query: 398 ALEDSGGWMERTTVEDMDIAVRAHLRGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGP 457
           AL+++GG+   T  ED + A+  H RGWK ++++        PE++ ++ +Q+ RW +G 
Sbjct: 328 ALDEAGGFAGETITEDAETALEIHSRGWKSLYIDRAMIAGLQPETFASFIQQRGRWATGM 387

Query: 458 MQLFRLCLP 466
           MQ+  L  P
Sbjct: 388 MQMLLLKNP 396


>pdb|2Z87|A Chain A, Crystal Structure Of Chondroitin Polymerase From
           Escherichia Coli Strain K4 (K4cp) Complexed With Udp-
           Galnac And Udp
 pdb|2Z87|B Chain B, Crystal Structure Of Chondroitin Polymerase From
           Escherichia Coli Strain K4 (K4cp) Complexed With Udp-
           Galnac And Udp
          Length = 624

 Score = 30.0 bits (66), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 62/125 (49%), Gaps = 11/125 (8%)

Query: 225 VQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANI 284
           + IP  N  ++   ++A +CN    +  I    +  +DD + + +  EE+++  E+  NI
Sbjct: 96  IVIPTYNRAKILAITLACLCN----QKTIYDYEVIVADDGSKENI--EEIVREFESLLNI 149

Query: 285 VYRHRILRD-GYKAGNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELG 343
            Y  +  +D GY+   +++ +     K Y +VAI D D  PNP +++  +     ++ + 
Sbjct: 150 KYVRQ--KDYGYQLCAVRN-LGLRAAK-YNYVAILDCDMAPNPLWVQSYMELLAVDDNVA 205

Query: 344 LVQAR 348
           L+  R
Sbjct: 206 LIGPR 210


>pdb|2Z86|A Chain A, Crystal Structure Of Chondroitin Polymerase From
           Escherichia Coli Strain K4 (K4cp) Complexed With
           Udp-Glcua And Udp
 pdb|2Z86|B Chain B, Crystal Structure Of Chondroitin Polymerase From
           Escherichia Coli Strain K4 (K4cp) Complexed With
           Udp-Glcua And Udp
 pdb|2Z86|C Chain C, Crystal Structure Of Chondroitin Polymerase From
           Escherichia Coli Strain K4 (K4cp) Complexed With
           Udp-Glcua And Udp
 pdb|2Z86|D Chain D, Crystal Structure Of Chondroitin Polymerase From
           Escherichia Coli Strain K4 (K4cp) Complexed With
           Udp-Glcua And Udp
          Length = 625

 Score = 30.0 bits (66), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 62/125 (49%), Gaps = 11/125 (8%)

Query: 225 VQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANI 284
           + IP  N  ++   ++A +CN    +  I    +  +DD + + +  EE+++  E+  NI
Sbjct: 97  IVIPTYNRAKILAITLACLCN----QKTIYDYEVIVADDGSKENI--EEIVREFESLLNI 150

Query: 285 VYRHRILRD-GYKAGNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELG 343
            Y  +  +D GY+   +++ +     K Y +VAI D D  PNP +++  +     ++ + 
Sbjct: 151 KYVRQ--KDYGYQLCAVRN-LGLRAAK-YNYVAILDCDMAPNPLWVQSYMELLAVDDNVA 206

Query: 344 LVQAR 348
           L+  R
Sbjct: 207 LIGPR 211


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.138    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,322,490
Number of Sequences: 62578
Number of extensions: 687820
Number of successful extensions: 1560
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1557
Number of HSP's gapped (non-prelim): 5
length of query: 682
length of database: 14,973,337
effective HSP length: 105
effective length of query: 577
effective length of database: 8,402,647
effective search space: 4848327319
effective search space used: 4848327319
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)