Query 005700
Match_columns 682
No_of_seqs 585 out of 3888
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 12:25:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005700.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005700hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11498 bcsA cellulose syntha 100.0 1.3E-42 2.9E-47 402.4 48.3 411 143-585 191-615 (852)
2 TIGR03030 CelA cellulose synth 100.0 2.9E-42 6.3E-47 402.4 44.6 415 142-585 61-504 (713)
3 PRK14583 hmsR N-glycosyltransf 100.0 4E-39 8.7E-44 358.7 44.7 242 218-470 72-313 (444)
4 PRK11204 N-glycosyltransferase 100.0 3.5E-39 7.6E-44 357.3 43.1 243 218-471 51-293 (420)
5 TIGR03111 glyc2_xrt_Gpos1 puta 100.0 4E-37 8.7E-42 341.9 37.9 251 218-476 46-305 (439)
6 PRK05454 glucosyltransferase M 100.0 1.8E-35 3.8E-40 339.3 45.9 270 218-497 121-410 (691)
7 cd06437 CESA_CaSu_A2 Cellulose 100.0 1.6E-36 3.4E-41 308.6 23.2 232 221-457 1-232 (232)
8 PRK14716 bacteriophage N4 adso 100.0 6.1E-34 1.3E-38 316.4 39.6 286 168-464 16-331 (504)
9 PLN02893 Cellulose synthase-li 100.0 6.7E-34 1.4E-38 320.1 34.0 338 90-482 16-521 (734)
10 cd06427 CESA_like_2 CESA_like_ 100.0 1.4E-34 3E-39 296.4 22.5 237 221-465 1-238 (241)
11 COG1215 Glycosyltransferases, 100.0 4.1E-33 9E-38 310.1 33.5 236 220-464 53-291 (439)
12 cd04191 Glucan_BSP_ModH Glucan 100.0 1.9E-33 4.2E-38 289.2 23.9 233 223-459 1-253 (254)
13 TIGR03472 HpnI hopanoid biosyn 100.0 1.3E-31 2.8E-36 292.0 32.9 232 218-458 38-273 (373)
14 PRK11234 nfrB bacteriophage N4 100.0 1.5E-31 3.2E-36 308.5 35.2 286 169-465 11-337 (727)
15 PF03142 Chitin_synth_2: Chiti 100.0 1.1E-31 2.3E-36 295.9 28.1 357 218-581 22-496 (527)
16 cd06421 CESA_CelA_like CESA_Ce 100.0 1.1E-31 2.4E-36 272.1 21.5 231 221-460 1-233 (234)
17 cd06435 CESA_NdvC_like NdvC_li 100.0 1.8E-31 3.9E-36 271.7 22.3 233 224-464 1-235 (236)
18 cd04190 Chitin_synth_C C-termi 100.0 3.9E-32 8.5E-37 279.0 15.8 205 225-459 1-243 (244)
19 PF13641 Glyco_tranf_2_3: Glyc 100.0 4.5E-33 9.8E-38 281.8 8.1 226 221-456 1-228 (228)
20 PLN02189 cellulose synthase 100.0 5.7E-30 1.2E-34 293.7 32.7 259 218-482 328-815 (1040)
21 PRK15489 nfrB bacteriophage N4 100.0 5.2E-29 1.1E-33 283.8 38.4 291 166-465 16-345 (703)
22 PLN02195 cellulose synthase A 100.0 9.8E-30 2.1E-34 290.3 31.8 259 218-482 249-750 (977)
23 PLN02638 cellulose synthase A 100.0 1.9E-29 4.1E-34 290.3 31.2 259 218-482 346-853 (1079)
24 cd02520 Glucosylceramide_synth 100.0 1E-30 2.2E-35 259.3 17.4 191 221-456 1-195 (196)
25 PLN02190 cellulose synthase-li 100.0 3.2E-29 6.8E-34 280.7 30.5 256 218-482 90-535 (756)
26 PLN02436 cellulose synthase A 100.0 3.4E-29 7.3E-34 287.0 31.0 260 218-482 362-869 (1094)
27 PLN02400 cellulose synthase 100.0 2.2E-29 4.7E-34 289.8 28.9 260 218-482 353-858 (1085)
28 PLN02248 cellulose synthase-li 100.0 7.3E-29 1.6E-33 285.0 31.9 196 282-482 585-910 (1135)
29 PLN02915 cellulose synthase A 100.0 6.3E-28 1.4E-32 277.0 32.1 260 218-482 284-817 (1044)
30 cd06434 GT2_HAS Hyaluronan syn 100.0 1.7E-28 3.6E-33 249.4 16.8 223 222-459 1-234 (235)
31 cd04192 GT_2_like_e Subfamily 100.0 1.2E-27 2.6E-32 241.3 20.5 223 225-456 1-229 (229)
32 cd06439 CESA_like_1 CESA_like_ 100.0 2.2E-27 4.9E-32 243.8 21.6 225 218-459 26-250 (251)
33 TIGR03469 HonB hopene-associat 100.0 9.3E-26 2E-30 246.9 34.0 231 218-456 37-281 (384)
34 cd02525 Succinoglycan_BP_ExoA 99.9 5.6E-25 1.2E-29 224.7 22.0 232 222-465 1-235 (249)
35 PF03552 Cellulose_synt: Cellu 99.9 4.8E-25 1E-29 246.7 14.8 219 282-511 166-523 (720)
36 COG2943 MdoH Membrane glycosyl 99.9 1.3E-21 2.7E-26 207.4 36.8 309 174-498 103-431 (736)
37 cd06438 EpsO_like EpsO protein 99.9 2.7E-24 5.8E-29 210.7 14.5 181 225-416 1-183 (183)
38 cd02510 pp-GalNAc-T pp-GalNAc- 99.9 9.5E-23 2.1E-27 215.7 19.7 210 224-440 1-227 (299)
39 cd06436 GlcNAc-1-P_transferase 99.9 2.1E-22 4.5E-27 199.0 15.8 179 225-413 1-191 (191)
40 cd04184 GT2_RfbC_Mx_like Myxoc 99.9 3.5E-22 7.6E-27 197.9 16.7 195 221-435 1-198 (202)
41 cd04195 GT2_AmsE_like GT2_AmsE 99.9 2.7E-22 5.9E-27 198.7 15.7 196 224-436 1-199 (201)
42 PF13632 Glyco_trans_2_3: Glyc 99.9 3.2E-21 7E-26 190.4 15.7 142 314-457 1-143 (193)
43 cd06433 GT_2_WfgS_like WfgS an 99.9 1.1E-20 2.4E-25 185.8 16.9 191 224-436 1-192 (202)
44 cd06913 beta3GnTL1_like Beta 1 99.9 4.2E-20 9.2E-25 186.1 21.2 203 225-436 1-207 (219)
45 PLN02726 dolichyl-phosphate be 99.9 5.9E-20 1.3E-24 188.5 21.7 210 218-439 6-219 (243)
46 cd02526 GT2_RfbF_like RfbF is 99.8 8.4E-21 1.8E-25 193.0 15.1 203 225-443 1-209 (237)
47 cd04196 GT_2_like_d Subfamily 99.8 2.4E-20 5.1E-25 186.0 17.6 197 224-435 1-200 (214)
48 cd04185 GT_2_like_b Subfamily 99.8 3.5E-20 7.6E-25 184.0 17.6 177 225-444 1-179 (202)
49 cd04186 GT_2_like_c Subfamily 99.8 6.8E-20 1.5E-24 174.6 15.9 163 225-438 1-165 (166)
50 cd06420 GT2_Chondriotin_Pol_N 99.8 2.2E-19 4.7E-24 174.8 18.2 176 225-437 1-180 (182)
51 cd06442 DPM1_like DPM1_like re 99.8 2.6E-19 5.7E-24 180.3 18.4 204 225-441 1-206 (224)
52 cd06423 CESA_like CESA_like is 99.8 3.4E-20 7.3E-25 176.8 10.0 180 225-413 1-180 (180)
53 cd02522 GT_2_like_a GT_2_like_ 99.8 6.7E-19 1.5E-23 176.9 18.8 184 223-436 1-184 (221)
54 PRK10018 putative glycosyl tra 99.8 1.6E-18 3.5E-23 180.9 22.2 228 219-467 3-234 (279)
55 PRK10073 putative glycosyl tra 99.8 5.9E-19 1.3E-23 188.9 16.4 202 219-435 4-213 (328)
56 cd04188 DPG_synthase DPG_synth 99.8 6.4E-18 1.4E-22 169.2 17.9 195 225-432 1-202 (211)
57 PRK10063 putative glycosyl tra 99.8 1.6E-17 3.5E-22 171.0 19.5 190 221-436 1-194 (248)
58 PTZ00260 dolichyl-phosphate be 99.8 9.5E-17 2.1E-21 172.1 26.0 208 218-434 67-288 (333)
59 COG1216 Predicted glycosyltran 99.8 9.4E-18 2E-22 178.1 17.4 213 220-442 2-224 (305)
60 KOG2571 Chitin synthase/hyalur 99.8 1.8E-17 4E-22 188.8 20.1 150 309-460 438-600 (862)
61 PF13506 Glyco_transf_21: Glyc 99.7 1.7E-17 3.6E-22 161.5 13.7 163 284-455 6-175 (175)
62 TIGR01556 rhamnosyltran L-rham 99.7 5.3E-17 1.1E-21 170.2 15.1 198 229-442 2-205 (281)
63 cd04179 DPM_DPG-synthase_like 99.7 4.3E-17 9.3E-22 158.9 12.9 181 225-419 1-184 (185)
64 PF00535 Glycos_transf_2: Glyc 99.7 1E-17 2.3E-22 159.0 7.8 169 224-403 1-169 (169)
65 PF10111 Glyco_tranf_2_2: Glyc 99.7 1.4E-15 3.1E-20 159.5 18.9 204 224-438 1-222 (281)
66 KOG2547 Ceramide glucosyltrans 99.7 2.7E-16 5.9E-21 161.5 11.1 232 218-456 82-315 (431)
67 PRK10714 undecaprenyl phosphat 99.7 4.4E-14 9.5E-19 151.1 27.8 193 220-434 5-200 (325)
68 PRK13915 putative glucosyl-3-p 99.7 1.3E-15 2.9E-20 161.2 15.8 196 218-431 28-238 (306)
69 cd04187 DPM1_like_bac Bacteria 99.6 2.2E-15 4.8E-20 146.9 14.7 177 225-418 1-179 (181)
70 cd00761 Glyco_tranf_GTA_type G 99.6 3.6E-14 7.8E-19 131.7 13.6 153 225-428 1-155 (156)
71 KOG2978 Dolichol-phosphate man 99.5 7.5E-14 1.6E-18 131.0 13.6 203 221-435 3-210 (238)
72 cd02511 Beta4Glucosyltransfera 99.4 5.1E-12 1.1E-16 128.5 14.7 103 222-343 1-103 (229)
73 COG0463 WcaA Glycosyltransfera 99.3 1.3E-11 2.7E-16 119.7 11.9 106 220-336 2-107 (291)
74 KOG2977 Glycosyltransferase [G 99.0 1.1E-08 2.4E-13 102.8 17.2 210 222-442 68-291 (323)
75 cd02514 GT13_GLCNAC-TI GT13_GL 99.0 4E-09 8.6E-14 111.9 12.9 176 223-427 2-198 (334)
76 KOG3736 Polypeptide N-acetylga 98.9 9.6E-10 2.1E-14 122.7 3.9 211 218-437 139-368 (578)
77 KOG3738 Predicted polypeptide 98.9 2.5E-09 5.5E-14 111.2 6.0 230 218-460 121-378 (559)
78 KOG3737 Predicted polypeptide 98.8 6.5E-09 1.4E-13 107.8 8.2 210 218-435 152-384 (603)
79 PF13712 Glyco_tranf_2_5: Glyc 98.7 2.6E-07 5.7E-12 93.1 13.8 181 223-444 1-203 (217)
80 cd00899 b4GalT Beta-4-Galactos 97.9 7.5E-05 1.6E-09 74.5 10.2 180 222-460 3-199 (219)
81 PF03071 GNT-I: GNT-I family; 97.8 0.00022 4.7E-09 77.9 12.3 206 218-449 90-317 (434)
82 PF09488 Osmo_MPGsynth: Mannos 97.4 0.00085 1.8E-08 70.4 10.0 127 220-353 49-205 (381)
83 PF03452 Anp1: Anp1; InterPro 97.3 0.0021 4.6E-08 66.1 11.8 117 218-334 22-166 (269)
84 PF13704 Glyco_tranf_2_4: Glyc 97.2 0.0016 3.4E-08 56.7 8.6 83 230-324 1-84 (97)
85 TIGR02460 osmo_MPGsynth mannos 97.2 0.0034 7.3E-08 65.6 11.2 101 220-327 49-175 (381)
86 PRK14503 mannosyl-3-phosphogly 97.2 0.0033 7.2E-08 66.1 11.1 100 220-326 50-175 (393)
87 KOG3588 Chondroitin synthase 1 96.9 0.036 7.9E-07 58.3 15.9 203 218-435 226-434 (494)
88 COG4092 Predicted glycosyltran 96.8 0.062 1.4E-06 54.3 16.5 196 221-423 2-216 (346)
89 PRK14502 bifunctional mannosyl 96.4 0.02 4.3E-07 66.1 11.4 102 220-329 54-182 (694)
90 PF05679 CHGN: Chondroitin N-a 95.8 0.29 6.4E-06 55.7 16.8 202 220-434 246-463 (499)
91 PF01644 Chitin_synth_1: Chiti 95.7 0.095 2.1E-06 49.9 10.2 53 283-336 110-163 (163)
92 PF11316 Rhamno_transf: Putati 95.1 0.16 3.4E-06 51.9 10.5 93 238-337 46-140 (234)
93 PF02709 Glyco_transf_7C: N-te 94.7 0.025 5.4E-07 47.3 2.7 48 387-434 19-69 (78)
94 PF11397 GlcNAc: Glycosyltrans 94.2 0.38 8.3E-06 51.8 11.3 210 223-438 2-262 (343)
95 PF03214 RGP: Reversibly glyco 93.5 0.25 5.3E-06 51.9 7.8 99 222-338 9-118 (348)
96 KOG3916 UDP-Gal:glucosylcerami 93.0 0.33 7.1E-06 51.1 7.8 183 219-463 149-350 (372)
97 PF01762 Galactosyl_T: Galacto 92.0 0.4 8.6E-06 47.4 6.8 179 234-428 4-192 (195)
98 TIGR03584 PseF pseudaminic aci 92.0 2.3 5.1E-05 42.9 12.4 96 231-338 22-122 (222)
99 PF11735 CAP59_mtransfer: Cryp 91.9 2.6 5.7E-05 43.1 12.6 122 224-347 3-146 (241)
100 KOG1413 N-acetylglucosaminyltr 91.5 1.7 3.6E-05 46.1 10.7 176 218-414 64-257 (411)
101 PF06306 CgtA: Beta-1,4-N-acet 90.9 0.79 1.7E-05 48.0 7.6 105 221-333 87-197 (347)
102 PLN02458 transferase, transfer 90.7 3.8 8.2E-05 43.3 12.4 105 218-332 109-223 (346)
103 PF09258 Glyco_transf_64: Glyc 90.1 1.1 2.3E-05 46.2 8.0 103 224-341 2-105 (247)
104 cd00218 GlcAT-I Beta1,3-glucur 89.9 4.3 9.3E-05 40.8 11.7 101 221-332 1-116 (223)
105 PF02434 Fringe: Fringe-like; 89.6 0.91 2E-05 46.9 7.0 110 309-432 84-204 (252)
106 KOG1476 Beta-1,3-glucuronyltra 89.2 4.9 0.00011 42.1 11.7 105 220-336 86-205 (330)
107 PLN02917 CMP-KDO synthetase 88.2 9.6 0.00021 40.3 13.7 184 233-431 72-266 (293)
108 cd04182 GT_2_like_f GT_2_like_ 85.9 9.4 0.0002 36.5 11.3 94 231-338 24-118 (186)
109 TIGR03202 pucB xanthine dehydr 85.4 12 0.00025 36.5 11.8 102 231-341 24-126 (190)
110 KOG4179 Lysyl hydrolase/glycos 85.4 1.5 3.4E-05 47.1 5.7 111 221-335 3-134 (568)
111 PF02364 Glucan_synthase: 1,3- 85.1 6.1 0.00013 46.9 10.9 160 295-459 275-459 (817)
112 PF12804 NTP_transf_3: MobA-li 82.8 10 0.00022 35.6 9.8 101 227-345 19-121 (160)
113 TIGR03310 matur_ygfJ molybdenu 82.3 16 0.00035 35.2 11.3 97 231-341 23-120 (188)
114 cd02540 GT2_GlmU_N_bac N-termi 81.2 18 0.0004 36.0 11.6 96 227-338 21-117 (229)
115 PLN03180 reversibly glycosylat 80.9 14 0.00031 39.2 10.6 25 300-327 85-109 (346)
116 TIGR00466 kdsB 3-deoxy-D-manno 79.8 29 0.00063 35.3 12.6 183 231-431 22-222 (238)
117 PRK13385 2-C-methyl-D-erythrit 79.8 11 0.00024 38.0 9.5 98 231-339 28-126 (230)
118 PF05045 RgpF: Rhamnan synthes 79.5 35 0.00075 39.0 14.2 122 219-349 263-406 (498)
119 cd02513 CMP-NeuAc_Synthase CMP 78.9 22 0.00048 35.2 11.3 96 231-338 24-125 (223)
120 COG1212 KdsB CMP-2-keto-3-deox 77.8 55 0.0012 33.1 13.0 179 234-430 29-219 (247)
121 PF13733 Glyco_transf_7N: N-te 77.5 2.4 5.2E-05 39.1 3.3 77 220-327 46-127 (136)
122 cd06915 NTP_transferase_WcbM_l 76.7 27 0.00058 34.4 11.2 98 227-338 24-121 (223)
123 cd04181 NTP_transferase NTP_tr 76.7 23 0.0005 34.8 10.6 97 227-337 24-120 (217)
124 cd06422 NTP_transferase_like_1 76.6 24 0.00051 35.1 10.7 95 227-335 25-120 (221)
125 PRK14353 glmU bifunctional N-a 76.4 27 0.00058 39.0 12.2 102 227-342 28-130 (446)
126 PRK00317 mobA molybdopterin-gu 74.9 24 0.00052 34.4 10.0 89 231-339 28-117 (193)
127 cd02516 CDP-ME_synthetase CDP- 74.7 24 0.00052 34.9 10.2 99 231-340 26-125 (218)
128 PF04666 Glyco_transf_54: N-Ac 73.2 36 0.00079 36.0 11.3 118 220-338 51-196 (297)
129 cd06425 M1P_guanylylT_B_like_N 73.1 24 0.00052 35.5 9.8 100 227-338 26-126 (233)
130 PLN03133 beta-1,3-galactosyltr 73.0 92 0.002 36.5 15.3 194 221-434 385-596 (636)
131 PRK13368 3-deoxy-manno-octulos 71.6 45 0.00096 33.6 11.4 92 232-340 26-118 (238)
132 cd02517 CMP-KDO-Synthetase CMP 71.0 41 0.0009 33.8 11.0 100 227-342 21-121 (239)
133 cd00505 Glyco_transf_8 Members 70.6 43 0.00094 34.1 11.1 114 225-345 3-128 (246)
134 PRK14352 glmU bifunctional N-a 69.7 55 0.0012 37.1 12.7 100 226-338 26-126 (482)
135 cd06428 M1P_guanylylT_A_like_N 69.5 39 0.00085 34.6 10.6 103 226-338 25-128 (257)
136 PRK05450 3-deoxy-manno-octulos 69.2 63 0.0014 32.6 11.9 93 231-338 25-118 (245)
137 cd02503 MobA MobA catalyzes th 68.6 43 0.00094 32.0 10.1 85 231-336 24-109 (181)
138 PF05060 MGAT2: N-acetylglucos 68.6 40 0.00086 36.5 10.4 52 220-272 30-81 (356)
139 TIGR03552 F420_cofC 2-phospho- 68.5 59 0.0013 31.6 11.2 86 234-337 31-117 (195)
140 cd06431 GT8_LARGE_C LARGE cata 67.9 37 0.00081 35.6 10.0 108 222-335 2-120 (280)
141 TIGR02665 molyb_mobA molybdopt 67.2 44 0.00095 32.1 9.9 90 231-338 25-115 (186)
142 PLN03153 hypothetical protein; 66.0 12 0.00025 42.3 6.0 101 309-433 208-315 (537)
143 TIGR01173 glmU UDP-N-acetylglu 65.7 54 0.0012 36.5 11.5 102 227-346 23-125 (451)
144 cd04189 G1P_TT_long G1P_TT_lon 64.5 74 0.0016 31.8 11.3 98 226-337 25-122 (236)
145 cd02523 PC_cytidylyltransferas 63.4 31 0.00067 34.5 8.2 91 227-333 24-114 (229)
146 cd02518 GT2_SpsF SpsF is a gly 62.7 86 0.0019 31.4 11.4 91 231-338 22-115 (233)
147 PF00483 NTP_transferase: Nucl 61.5 29 0.00064 35.0 7.8 103 227-338 25-128 (248)
148 KOG2287 Galactosyltransferases 60.6 98 0.0021 33.6 11.9 196 220-432 94-303 (349)
149 PRK14355 glmU bifunctional N-a 60.4 1.1E+02 0.0023 34.5 12.6 98 226-338 25-123 (459)
150 PRK15480 glucose-1-phosphate t 59.5 87 0.0019 33.0 11.0 100 226-338 28-128 (292)
151 PRK00155 ispD 2-C-methyl-D-ery 58.4 99 0.0021 30.9 10.9 95 231-339 29-124 (227)
152 cd04183 GT2_BcE_like GT2_BcbE_ 57.9 87 0.0019 31.2 10.4 98 227-335 24-121 (231)
153 TIGR01207 rmlA glucose-1-phosp 57.7 95 0.0021 32.6 10.9 100 226-337 24-123 (286)
154 COG1213 Predicted sugar nucleo 57.7 24 0.00051 35.8 5.9 92 232-336 30-121 (239)
155 PF01697 Glyco_transf_92: Glyc 57.6 59 0.0013 33.6 9.4 113 227-347 8-145 (285)
156 PF11051 Mannosyl_trans3: Mann 57.2 44 0.00095 34.9 8.2 23 309-331 88-112 (271)
157 PLN03193 beta-1,3-galactosyltr 57.1 1.7E+02 0.0036 32.4 12.7 165 255-439 181-357 (408)
158 PRK02726 molybdopterin-guanine 55.8 88 0.0019 30.8 9.8 89 231-338 31-120 (200)
159 cd06430 GT8_like_2 GT8_like_2 53.9 2.2E+02 0.0047 30.4 12.6 119 222-346 2-132 (304)
160 TIGR00453 ispD 2-C-methyl-D-er 52.8 97 0.0021 30.6 9.7 94 231-339 25-119 (217)
161 cd04194 GT8_A4GalT_like A4GalT 52.7 75 0.0016 32.2 9.0 89 234-326 13-110 (248)
162 PRK14358 glmU bifunctional N-a 51.7 1.1E+02 0.0025 34.6 11.1 97 227-339 30-127 (481)
163 PF13896 Glyco_transf_49: Glyc 51.4 1.4E+02 0.0029 32.0 10.9 46 300-348 119-167 (317)
164 KOG1022 Acetylglucosaminyltran 50.6 1.1E+02 0.0023 34.8 9.8 119 218-353 440-560 (691)
165 TIGR01105 galF UTP-glucose-1-p 50.5 1.9E+02 0.0041 30.6 11.8 103 226-337 28-155 (297)
166 PF09837 DUF2064: Uncharacteri 49.8 1.4E+02 0.0031 27.0 9.3 52 293-348 42-94 (122)
167 PRK14360 glmU bifunctional N-a 49.4 1.8E+02 0.0039 32.3 12.2 98 227-339 24-122 (450)
168 cd06426 NTP_transferase_like_2 49.2 1.2E+02 0.0027 29.7 9.8 97 227-338 24-120 (220)
169 PF03360 Glyco_transf_43: Glyc 48.2 39 0.00084 33.8 5.7 73 252-331 10-97 (207)
170 KOG2264 Exostosin EXT1L [Signa 47.4 36 0.00077 38.5 5.7 91 221-327 649-740 (907)
171 PLN02728 2-C-methyl-D-erythrit 45.8 1.5E+02 0.0033 30.4 10.0 93 233-338 52-145 (252)
172 COG1209 RfbA dTDP-glucose pyro 44.5 1.9E+02 0.0042 30.2 10.1 194 227-443 26-228 (286)
173 KOG3917 Beta-1,4-galactosyltra 43.6 19 0.00041 36.0 2.6 148 219-429 72-226 (310)
174 TIGR00454 conserved hypothetic 42.4 2.1E+02 0.0045 27.8 9.9 92 231-339 25-117 (183)
175 cd06432 GT8_HUGT1_C_like The C 41.9 3.5E+02 0.0076 27.7 11.9 99 233-335 13-118 (248)
176 PRK15171 lipopolysaccharide 1, 41.8 1.7E+02 0.0037 31.5 10.0 110 221-334 24-142 (334)
177 PRK14356 glmU bifunctional N-a 41.2 2.7E+02 0.0058 31.1 11.9 93 231-337 31-124 (456)
178 COG2068 Uncharacterized MobA-r 40.2 3E+02 0.0065 27.3 10.4 96 231-339 29-125 (199)
179 PF03213 Pox_P35: Poxvirus P35 40.1 1.5E+02 0.0032 31.5 8.6 46 309-355 116-162 (325)
180 PF02348 CTP_transf_3: Cytidyl 39.7 1.4E+02 0.0031 29.2 8.6 95 233-341 24-119 (217)
181 cd02509 GDP-M1P_Guanylyltransf 39.4 1.9E+02 0.0042 30.0 9.7 98 226-333 26-125 (274)
182 COG1208 GCD1 Nucleoside-diphos 39.3 2E+02 0.0043 31.3 10.1 99 227-339 27-125 (358)
183 PRK14354 glmU bifunctional N-a 39.2 3E+02 0.0064 30.7 11.9 95 227-338 25-120 (458)
184 PF01501 Glyco_transf_8: Glyco 37.9 67 0.0015 32.0 5.9 44 229-272 5-50 (250)
185 COG0659 SUL1 Sulfate permease 37.5 7.1E+02 0.015 28.9 18.2 49 234-287 460-512 (554)
186 COG1861 SpsF Spore coat polysa 37.4 2.9E+02 0.0062 28.0 9.7 106 225-347 21-127 (241)
187 PF04724 Glyco_transf_17: Glyc 36.9 5.9E+02 0.013 27.8 13.3 122 222-348 80-214 (356)
188 cd02538 G1P_TT_short G1P_TT_sh 36.2 3.2E+02 0.0069 27.3 10.6 97 228-337 27-124 (240)
189 cd02508 ADP_Glucose_PP ADP-glu 35.9 2.3E+02 0.005 27.5 9.2 107 226-338 23-136 (200)
190 cd02524 G1P_cytidylyltransfera 35.7 3.2E+02 0.0068 27.7 10.5 102 226-338 23-143 (253)
191 COG0746 MobA Molybdopterin-gua 35.2 3E+02 0.0065 27.1 9.7 90 230-340 26-116 (192)
192 PRK14357 glmU bifunctional N-a 34.6 3.9E+02 0.0084 29.7 11.9 94 226-338 22-116 (448)
193 PRK14489 putative bifunctional 32.3 3.3E+02 0.0072 29.6 10.5 41 295-338 79-120 (366)
194 TIGR02623 G1P_cyt_trans glucos 32.1 3.9E+02 0.0084 27.2 10.5 100 226-337 24-142 (254)
195 PRK09451 glmU bifunctional N-a 32.1 4.8E+02 0.01 29.1 12.1 94 227-337 28-122 (456)
196 PRK10122 GalU regulator GalF; 31.9 5.8E+02 0.012 26.8 11.9 104 226-338 28-156 (297)
197 PRK09382 ispDF bifunctional 2- 31.6 2.2E+02 0.0047 31.3 8.8 92 231-338 31-123 (378)
198 cd04198 eIF-2B_gamma_N The N-t 31.2 4.2E+02 0.0091 26.1 10.3 99 226-338 25-126 (214)
199 KOG2791 N-acetylglucosaminyltr 30.2 4.9E+02 0.011 28.0 10.5 51 221-272 117-167 (455)
200 TIGR01208 rmlA_long glucose-1- 29.8 4.2E+02 0.0091 28.4 10.8 98 227-338 25-123 (353)
201 KOG2571 Chitin synthase/hyalur 28.2 1.6E+02 0.0034 35.7 7.4 43 532-575 730-772 (862)
202 cd02541 UGPase_prokaryotic Pro 27.9 3.5E+02 0.0076 27.6 9.4 104 226-338 25-147 (267)
203 PF09949 DUF2183: Uncharacteri 27.8 1.5E+02 0.0032 26.0 5.4 47 236-287 51-97 (100)
204 cd04197 eIF-2B_epsilon_N The N 27.4 5.2E+02 0.011 25.4 10.3 103 226-338 25-129 (217)
205 PF01128 IspD: 2-C-methyl-D-er 25.9 5.1E+02 0.011 26.1 9.7 93 231-338 26-119 (221)
206 COG3181 Uncharacterized protei 22.1 5E+02 0.011 27.9 9.1 111 222-341 29-149 (319)
207 PRK00844 glgC glucose-1-phosph 21.7 3.3E+02 0.0073 30.0 8.3 105 226-338 30-142 (407)
208 COG1981 Predicted membrane pro 21.6 3.5E+02 0.0076 25.3 6.7 53 45-104 9-61 (149)
209 TIGR01099 galU UTP-glucose-1-p 21.3 7.3E+02 0.016 25.0 10.2 104 226-338 25-147 (260)
210 PRK14359 glmU bifunctional N-a 21.3 5.8E+02 0.013 28.0 10.2 91 227-334 25-116 (430)
211 PF14979 TMEM52: Transmembrane 20.9 3.1E+02 0.0068 25.7 6.3 30 221-250 62-91 (154)
212 PRK00576 molybdopterin-guanine 20.9 7.2E+02 0.016 23.5 9.7 43 296-338 59-102 (178)
213 PHA01631 hypothetical protein 20.3 85 0.0018 30.0 2.6 67 253-326 18-86 (176)
214 PRK05293 glgC glucose-1-phosph 20.2 3E+02 0.0065 29.9 7.4 106 226-337 28-141 (380)
No 1
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=100.00 E-value=1.3e-42 Score=402.39 Aligned_cols=411 Identities=23% Similarity=0.353 Sum_probs=279.3
Q ss_pred hhhhhhHHHHHHHHHhHHHhhchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCccccCCCCCCC
Q 005700 143 AIKGAFDLLYSSWVLVRVHYLAPPLQFLAN-ACIVLFLIQSLDRLILCLGCFWIRFKRIKPVPKHDDTSDLESGQKGFFP 221 (682)
Q Consensus 143 ~~~~~~~~~y~~W~~~r~~~~~~~l~~l~~-~~~~lfli~~~~~l~~~~~~~~~~~~r~rp~~~~~~~~~~~~~~~~~~P 221 (682)
.+..+...+|.+| |...+++.-..+.. +.++++++.++..+...++++...+...++ +. +.+. +.+..|
T Consensus 191 ~l~~~~~~rY~~W---R~~~tL~~~~~~~~~~~~~ll~ae~~~~~~~~lg~~~~~~~~~r~-~~--~~~~----~~~~~P 260 (852)
T PRK11498 191 VLSLTVSCRYIWW---RYTSTLNWDDPVSLVCGLILLFAETYAWIVLVLGYFQVVWPLNRQ-PV--PLPK----DMSLWP 260 (852)
T ss_pred HHHHHHHHHHHHH---HHheeeCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC-CC--CCCc----ccCCCC
Confidence 3445667899999 98888875433222 334455555555555555555443332221 11 1111 124579
Q ss_pred eEEEEeecCCch-HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhH
Q 005700 222 MVLVQIPMCNEK-EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNL 300 (682)
Q Consensus 222 ~VsVvIP~yNE~-~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaL 300 (682)
+|+|+||+|||+ +++++++.++++||||+++++|+|+|||++|++.+++++ . ++.|++++++.|+|+||+
T Consensus 261 ~VsViIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~la~~-------~--~v~yI~R~~n~~gKAGnL 331 (852)
T PRK11498 261 TVDIFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQE-------V--GVKYIARPTHEHAKAGNI 331 (852)
T ss_pred cEEEEEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHHHHHHH-------C--CcEEEEeCCCCcchHHHH
Confidence 999999999999 678899999999999998999999999999999877652 3 355667777778899999
Q ss_pred HHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCC--hHHHhhhh--hhhhhhHHHHh
Q 005700 301 KSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDEN--LLTRLQDI--NLSFHFEVEQQ 376 (682)
Q Consensus 301 n~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~--l~t~~~~~--~~~~~~~~~~~ 376 (682)
|.|++ .+++|||+++|||++++||+|++++..|.+||++++||+++.+.|.+.- ...+.... +....+...+.
T Consensus 332 N~aL~---~a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~VglVQtp~~f~n~dp~~rnl~~~~~~~~e~~~fy~~iq~ 408 (852)
T PRK11498 332 NNALK---YAKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKKLAMMQTPHHFFSPDPFERNLGRFRKTPNEGTLFYGLVQD 408 (852)
T ss_pred HHHHH---hCCCCEEEEECCCCCCChHHHHHHHHHHHhCCCeEEEEcceeccCCchHHHhhHHHhhcccchhHHHHHHHh
Confidence 99999 5799999999999999999999999998778999999999988776421 11111111 11111222222
Q ss_pred hccccccccccccceEEEEeeeehhcCCCCCCCchhHHHHHHHHHHcCCeEEEecCceeeeccCcCHHHHHHHhHhhhch
Q 005700 377 VNGVFINFFGFNGTAGVWRIKALEDSGGWMERTTVEDMDIAVRAHLRGWKFIFLNDVECQCELPESYEAYRKQQHRWHSG 456 (682)
Q Consensus 377 ~~~~~~~~~~~~G~~~~~Rr~al~~iGG~~~~~~~ED~~l~~rl~~~G~ki~y~~~a~~~~e~p~t~~~~~~Qr~RW~~G 456 (682)
...... ...++|+++++||++++++|||++++.+||.+++.+++++||++.|++++.+.+++|+|++++.+||.||++|
T Consensus 409 g~~~~~-a~~~~Gs~aviRReaLeeVGGfd~~titED~dlslRL~~~Gyrv~yl~~~~a~glaPesl~~~~~QR~RWarG 487 (852)
T PRK11498 409 GNDMWD-ATFFCGSCAVIRRKPLDEIGGIAVETVTEDAHTSLRLHRRGYTSAYMRIPQAAGLATESLSAHIGQRIRWARG 487 (852)
T ss_pred HHHhhc-ccccccceeeeEHHHHHHhcCCCCCccCccHHHHHHHHHcCCEEEEEeccceeEECCCCHHHHHHHHHHHHHH
Confidence 222221 2236899999999999999999999899999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhchhhhhcCCCcchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhccc-----cchhhHHHHHHHHHHHHH
Q 005700 457 PMQLFRLCLPDIIRAKISMGKKFNLIFLFFL-LRKLILPFYSFTLFCIILPMTMFIP-----EAELPAWVVCYIPATMSF 530 (682)
Q Consensus 457 ~~~~~~~~~~~~l~~~l~~~~k~~~l~~~~l-l~~li~p~~~f~~~~vilp~~~~~~-----~~~l~~~~~~~ip~~~~l 530 (682)
.+|.++++.+ +..+++++.+|+...-.++. +..+ |-. .+++.|+.++.. .........+.+|.++..
T Consensus 488 ~lQi~r~~~p-l~~~gL~~~qRl~y~~~~l~~l~g~--~~l----~~l~~Pl~~l~~gi~~i~a~~~~i~~y~lP~~~~~ 560 (852)
T PRK11498 488 MVQIFRLDNP-LTGKGLKLAQRLCYANAMLHFLSGI--PRL----IFLTAPLAFLLLHAYIIYAPALMIALFVLPHMIHA 560 (852)
T ss_pred HHHHHHHhCh-hccCCCCHHHHHHHHHHHHHHHHHH--HHH----HHHHHHHHHHHhCChheeCChHHHHHHHHHHHHHH
Confidence 9999998754 44566777777754422211 1111 111 111122222110 111112222334544331
Q ss_pred --HHhccCCCcchhHHHHHHHHHhHHHHHHHHHHHHHhhcCCcccEEeccCCCCCCC
Q 005700 531 --LNILPAPKSFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRSSE 585 (682)
Q Consensus 531 --l~~~~~~~~~~~~~~~llf~~~~s~~~~~a~l~gl~~~~~~~~W~~T~K~~~~~~ 585 (682)
.+.... ..+...++--+++.+++......++.+++. .+..+|.||+|+++.++
T Consensus 561 ~l~~~~~~-g~~r~~~wseiye~v~a~~l~~~~~~~ll~-p~~~~F~VTpKg~~~~~ 615 (852)
T PRK11498 561 SLTNSRIQ-GKYRHSFWSEIYETVLAWYIAPPTTVALFN-PHKGKFNVTAKGGLVEE 615 (852)
T ss_pred HHHHHHhc-CcchHhHHHHHHHHHHHHHHHHHHHHHHcC-ccCCCcccCCCCccccc
Confidence 111111 222223333467777777777788888775 35668999999876543
No 2
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=100.00 E-value=2.9e-42 Score=402.41 Aligned_cols=415 Identities=27% Similarity=0.367 Sum_probs=277.3
Q ss_pred chhhhhhHHHHHHHHHhHHHhhchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCccccCCCCCC
Q 005700 142 LAIKGAFDLLYSSWVLVRVHYLAPPLQFLA-NACIVLFLIQSLDRLILCLGCFWIRFKRIKPVPKHDDTSDLESGQKGFF 220 (682)
Q Consensus 142 ~~~~~~~~~~y~~W~~~r~~~~~~~l~~l~-~~~~~lfli~~~~~l~~~~~~~~~~~~r~rp~~~~~~~~~~~~~~~~~~ 220 (682)
..+..+...+|.+| |...+++.-.... .+.+.++++..+..+...++++...++..+ .+...+ .+.+..
T Consensus 61 ~~~~~~~~~~y~~w---r~~~tl~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~r-~~~~~~------~~~~~~ 130 (713)
T TIGR03030 61 LVLSVFISLRYLWW---RLTETLPFDNTLNFIFGTLLLLAELYSITILLLGYFQTVRPLDR-TPVPLP------LDPEEW 130 (713)
T ss_pred HHHHHHHHHHHHHh---heeeecCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CccCCC------CCcccC
Confidence 45566678999999 8888877533222 234445555555555555555444322222 111111 112568
Q ss_pred CeEEEEeecCCch-HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHH--------------HHHHHHHHHHhhcCCeEE
Q 005700 221 PMVLVQIPMCNEK-EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQ--------------TLIKEEVLKWQEAGANIV 285 (682)
Q Consensus 221 P~VsVvIP~yNE~-~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~--------------~~l~~~~~~~~~~~v~v~ 285 (682)
|.|+|+||+|||+ +.+++|++++.+||||.++++|+|+||+|+|.+. +.+++.++ + .++.
T Consensus 131 P~VsViIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~---~--~~v~ 205 (713)
T TIGR03030 131 PTVDVFIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCR---K--LGVN 205 (713)
T ss_pred CeeEEEEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHH---H--cCcE
Confidence 9999999999998 5668899999999999888999999999887651 22222222 2 3566
Q ss_pred EEeccCCCCcchhhHHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCC---ChH--H
Q 005700 286 YRHRILRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDE---NLL--T 360 (682)
Q Consensus 286 ~~~r~~~~g~KagaLn~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~---~l~--t 360 (682)
|+.++++.|+|++|+|.|++ .+++|||+++|||+.++||+|++++..|.+||++++||+++.+.|.+. ++. .
T Consensus 206 yi~r~~n~~~KAgnLN~al~---~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~~p~~~~~nl~~~~ 282 (713)
T TIGR03030 206 YITRPRNVHAKAGNINNALK---HTDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVSPDPIERNLGTFR 282 (713)
T ss_pred EEECCCCCCCChHHHHHHHH---hcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeeccCCCHHhhhhHHHH
Confidence 77788888889999999999 578999999999999999999999999987899999999988877642 111 1
Q ss_pred HhhhhhhhhhhHHHHhhccccccccccccceEEEEeeeehhcCCCCCCCchhHHHHHHHHHHcCCeEEEecCceeeeccC
Q 005700 361 RLQDINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEDSGGWMERTTVEDMDIAVRAHLRGWKFIFLNDVECQCELP 440 (682)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~iGG~~~~~~~ED~~l~~rl~~~G~ki~y~~~a~~~~e~p 440 (682)
+..+. ....+...+...... +...++|+++++||++++++|||++++++||.+++.+++++||++.|++++.++++.|
T Consensus 283 ~~~~e-~~~f~~~i~~g~~~~-~~~~~~Gs~~~iRR~al~~iGGf~~~~vtED~~l~~rL~~~G~~~~y~~~~~~~g~~p 360 (713)
T TIGR03030 283 RMPNE-NELFYGLIQDGNDFW-NAAFFCGSAAVLRREALDEIGGIAGETVTEDAETALKLHRRGWNSAYLDRPLIAGLAP 360 (713)
T ss_pred HhhhH-HHHHHHHHHHHHhhh-CCeeecCceeEEEHHHHHHcCCCCCCCcCcHHHHHHHHHHcCCeEEEeccccccccCC
Confidence 11111 111112222222221 1223679999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHhHhhhchhhHHHHHhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc-----cch
Q 005700 441 ESYEAYRKQQHRWHSGPMQLFRLCLPDIIRAKISMGKKFNLIFLFFLLRKLILPFYSFTLFCIILPMTMFIP-----EAE 515 (682)
Q Consensus 441 ~t~~~~~~Qr~RW~~G~~~~~~~~~~~~l~~~l~~~~k~~~l~~~~ll~~li~p~~~f~~~~vilp~~~~~~-----~~~ 515 (682)
+|++++.+||.||++|.+|.++...+ +..+++++.+|...+...... +.++. .+.+++.|+.+++. ...
T Consensus 361 ~sl~~~~~Qr~RWa~G~~qi~~~~~p-l~~~gl~~~qrl~y~~~~~~~---~~~~~--~~~~~~~P~~~l~~~~~~~~~~ 434 (713)
T TIGR03030 361 ETLSGHIGQRIRWAQGMMQIFRLDNP-LLKRGLSFPQRLCYLNAMLFW---FFPLP--RVIFLTAPLAYLFFGLNIFVAS 434 (713)
T ss_pred CCHHHHHHHHHHHhcChHHHHhhhCc-cccCCCCHHHHHHHHHHHHHH---HHHHH--HHHHHHHHHHHHHhCCcceeCC
Confidence 99999999999999999999886543 445567777776654322110 00100 01112222222111 111
Q ss_pred hhHHHHHHHHHHHHHH---HhccCCCcchhHHHHHHHHHhHHHHHHHHHHHHHhhcCCcccEEeccCCCCCCC
Q 005700 516 LPAWVVCYIPATMSFL---NILPAPKSFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRSSE 585 (682)
Q Consensus 516 l~~~~~~~ip~~~~ll---~~~~~~~~~~~~~~~llf~~~~s~~~~~a~l~gl~~~~~~~~W~~T~K~~~~~~ 585 (682)
...+..+++|.++..+ ...... ....++--+++.++++....+++.+++. .+..+|.||+|++..+.
T Consensus 435 ~~~~~~~~lp~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~F~VT~Kg~~~~~ 504 (713)
T TIGR03030 435 ALEILAYALPHMLHSLLTNSYLFGR--VRWPFWSEVYETVLAVYLLPPVLVTLLN-PKKPKFNVTPKGELLDE 504 (713)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC--eecchHHHHHHHHHHHHHHHHHHHHHhC-cCCCCceecCCCccccc
Confidence 1222233344332221 111111 1122223477788888888888998885 34568999999876543
No 3
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=100.00 E-value=4e-39 Score=358.74 Aligned_cols=242 Identities=21% Similarity=0.319 Sum_probs=208.1
Q ss_pred CCCCeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcch
Q 005700 218 GFFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKA 297 (682)
Q Consensus 218 ~~~P~VsVvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~Ka 297 (682)
+..|.|||+||+|||++.+++|++|+++|+||+ ++|+|+||+|+|++.+.+++..++. .++.+.+.+++.| |+
T Consensus 72 ~~~p~vsViIP~yNE~~~i~~~l~sll~q~yp~--~eIivVdDgs~D~t~~~~~~~~~~~----~~v~vv~~~~n~G-ka 144 (444)
T PRK14583 72 KGHPLVSILVPCFNEGLNARETIHAALAQTYTN--IEVIAINDGSSDDTAQVLDALLAED----PRLRVIHLAHNQG-KA 144 (444)
T ss_pred CCCCcEEEEEEeCCCHHHHHHHHHHHHcCCCCC--eEEEEEECCCCccHHHHHHHHHHhC----CCEEEEEeCCCCC-HH
Confidence 357899999999999999999999999999995 6799999999999998887655432 3344444455555 99
Q ss_pred hhHHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHhhhhhhhhhhHHHHhh
Q 005700 298 GNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQV 377 (682)
Q Consensus 298 gaLn~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~~~~~~~~~~~~~~ 377 (682)
+|+|.|++ .+++|+++++|||+.++||++.+++..+.++|++++||+.....|. .++.++.+..++.......+..
T Consensus 145 ~AlN~gl~---~a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~~g~v~g~~~~~~~-~~~~~~~~~~e~~~~~~~~~~~ 220 (444)
T PRK14583 145 IALRMGAA---AARSEYLVCIDGDALLDKNAVPYLVAPLIANPRTGAVTGNPRIRTR-STLIGRVQVGEFSSIIGLIKRT 220 (444)
T ss_pred HHHHHHHH---hCCCCEEEEECCCCCcCHHHHHHHHHHHHhCCCeEEEEccceecCC-CcchhhHHHHHHHHHHHHHHHH
Confidence 99999998 5799999999999999999999999999888999999998877665 5777888877666555444444
Q ss_pred ccccccccccccceEEEEeeeehhcCCCCCCCchhHHHHHHHHHHcCCeEEEecCceeeeccCcCHHHHHHHhHhhhchh
Q 005700 378 NGVFINFFGFNGTAGVWRIKALEDSGGWMERTTVEDMDIAVRAHLRGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGP 457 (682)
Q Consensus 378 ~~~~~~~~~~~G~~~~~Rr~al~~iGG~~~~~~~ED~~l~~rl~~~G~ki~y~~~a~~~~e~p~t~~~~~~Qr~RW~~G~ 457 (682)
....+..++.+|+++++||++++++|||+++..+||.|++.+++++||++.|.|++.++++.|+|++++++||.||.+|.
T Consensus 221 ~~~~g~~~~~sG~~~~~rr~al~~vGg~~~~~i~ED~dl~~rl~~~G~~i~~~p~a~~~~~~p~t~~~~~~Qr~RW~~G~ 300 (444)
T PRK14583 221 QRVYGQVFTVSGVVAAFRRRALADVGYWSPDMITEDIDISWKLQLKHWSVFFEPRGLCWILMPETLRGLWKQRLRWAQGG 300 (444)
T ss_pred HHHhCCceEecCceeEEEHHHHHHcCCCCCCcccccHHHHHHHHHcCCeEEEeeccEEeeeCCCCHHHHHHHHHHHhCcH
Confidence 44555666789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhchhhhh
Q 005700 458 MQLFRLCLPDIIR 470 (682)
Q Consensus 458 ~~~~~~~~~~~l~ 470 (682)
.|.+.+++...+.
T Consensus 301 ~~~~~~~~~~~~~ 313 (444)
T PRK14583 301 AEVFLKNMFKLWR 313 (444)
T ss_pred HHHHHHHHHHHhC
Confidence 9999887766543
No 4
>PRK11204 N-glycosyltransferase; Provisional
Probab=100.00 E-value=3.5e-39 Score=357.33 Aligned_cols=243 Identities=23% Similarity=0.381 Sum_probs=209.6
Q ss_pred CCCCeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcch
Q 005700 218 GFFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKA 297 (682)
Q Consensus 218 ~~~P~VsVvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~Ka 297 (682)
...|+|+|+||+|||++.+++|++|+.+|+||+ ++|+|+||+|+|++.+.+++..+ ...++.+++.+++.| |+
T Consensus 51 ~~~p~vsViIp~yne~~~i~~~l~sl~~q~yp~--~eiiVvdD~s~d~t~~~l~~~~~----~~~~v~~i~~~~n~G-ka 123 (420)
T PRK11204 51 KEYPGVSILVPCYNEGENVEETISHLLALRYPN--YEVIAINDGSSDNTGEILDRLAA----QIPRLRVIHLAENQG-KA 123 (420)
T ss_pred CCCCCEEEEEecCCCHHHHHHHHHHHHhCCCCC--eEEEEEECCCCccHHHHHHHHHH----hCCcEEEEEcCCCCC-HH
Confidence 457899999999999999999999999999995 67999999999999988876544 334566666566666 99
Q ss_pred hhHHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHhhhhhhhhhhHHHHhh
Q 005700 298 GNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQV 377 (682)
Q Consensus 298 gaLn~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~~~~~~~~~~~~~~ 377 (682)
+|+|.|++ .+++|+++++|+|+.++||++++++..++++|++++|++.....|. .++.++.+..++.......+..
T Consensus 124 ~aln~g~~---~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 199 (420)
T PRK11204 124 NALNTGAA---AARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPRIRNR-STLLGRIQVGEFSSIIGLIKRA 199 (420)
T ss_pred HHHHHHHH---HcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEECCceeccc-hhHHHHHHHHHHHHhhhHHHHH
Confidence 99999999 5799999999999999999999999999888999999998877665 4677777766665444444444
Q ss_pred ccccccccccccceEEEEeeeehhcCCCCCCCchhHHHHHHHHHHcCCeEEEecCceeeeccCcCHHHHHHHhHhhhchh
Q 005700 378 NGVFINFFGFNGTAGVWRIKALEDSGGWMERTTVEDMDIAVRAHLRGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGP 457 (682)
Q Consensus 378 ~~~~~~~~~~~G~~~~~Rr~al~~iGG~~~~~~~ED~~l~~rl~~~G~ki~y~~~a~~~~e~p~t~~~~~~Qr~RW~~G~ 457 (682)
.+..+...+.+|+++++||++++++|||+++..+||.+++.+++++||++.|+|++.++++.|+|++++.+||+||.+|.
T Consensus 200 ~~~~~~~~~~~G~~~~~rr~~l~~vgg~~~~~~~ED~~l~~rl~~~G~~i~~~p~~~~~~~~p~t~~~~~~Qr~RW~~G~ 279 (420)
T PRK11204 200 QRVYGRVFTVSGVITAFRKSALHEVGYWSTDMITEDIDISWKLQLRGWDIRYEPRALCWILMPETLKGLWKQRLRWAQGG 279 (420)
T ss_pred HHHhCCceEecceeeeeeHHHHHHhCCCCCCcccchHHHHHHHHHcCCeEEeccccEEEeECcccHHHHHHHHHHHhcCH
Confidence 44555666689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhchhhhhc
Q 005700 458 MQLFRLCLPDIIRA 471 (682)
Q Consensus 458 ~~~~~~~~~~~l~~ 471 (682)
+|.++++.+..++.
T Consensus 280 ~~~l~~~~~~~~~~ 293 (420)
T PRK11204 280 AEVLLKNFRRLWRW 293 (420)
T ss_pred HHHHHHHHHHhcCc
Confidence 99999887665543
No 5
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=100.00 E-value=4e-37 Score=341.90 Aligned_cols=251 Identities=15% Similarity=0.227 Sum_probs=195.4
Q ss_pred CCCCeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcch
Q 005700 218 GFFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKA 297 (682)
Q Consensus 218 ~~~P~VsVvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~Ka 297 (682)
+..|.|||+||+|||++.+.+||+|+.+|+||+++++|+|+||+|+|++.+++++..++. .++.+.+. +++ +||+
T Consensus 46 ~~~P~vsVIIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~~~--~~v~v~~~--~~~-~Gka 120 (439)
T TIGR03111 46 GKLPDITIIIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQNEF--PGLSLRYM--NSD-QGKA 120 (439)
T ss_pred CCCCCEEEEEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHHhC--CCeEEEEe--CCC-CCHH
Confidence 458999999999999999999999999999999888999999999999998877654432 22333322 334 4599
Q ss_pred hhHHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCC----CC----hHHHhhhhhhhh
Q 005700 298 GNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKD----EN----LLTRLQDINLSF 369 (682)
Q Consensus 298 gaLn~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~----~~----l~t~~~~~~~~~ 369 (682)
+|+|.|++ .+++|||+++|+|+.++||++++++..|.++|++++++|........ .+ +..+.+..++..
T Consensus 121 ~AlN~gl~---~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 197 (439)
T TIGR03111 121 KALNAAIY---NSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILTDKELIEKTKGRFLKLIRRCEYFEYAQ 197 (439)
T ss_pred HHHHHHHH---HccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEecCchhhhhhcchhhhHhHHhHHHHHHH
Confidence 99999999 57899999999999999999999999998889999998876432110 01 112222122221
Q ss_pred hhHHHHhhccccccccccccceEEEEeeeehhcCCCCCCCchhHHHHHHHHHH-cCCeEEEecCceeeeccCcCHHHHHH
Q 005700 370 HFEVEQQVNGVFINFFGFNGTAGVWRIKALEDSGGWMERTTVEDMDIAVRAHL-RGWKFIFLNDVECQCELPESYEAYRK 448 (682)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~iGG~~~~~~~ED~~l~~rl~~-~G~ki~y~~~a~~~~e~p~t~~~~~~ 448 (682)
.+...+...+.....++.+|+++++||++++++|||++++++||++++.++.. .|+++.++|++.++++.|+|++++++
T Consensus 198 ~~l~~r~~~s~~~~~~~~sGa~~~~Rr~~l~~vggf~~~~i~ED~~l~~rl~~~~g~kv~~~~~a~~~~~~p~t~~~~~~ 277 (439)
T TIGR03111 198 AFLAGRNFESQVNSLFTLSGAFSAFRRETILKTQLYNSETVGEDTDMTFQIRELLDGKVYLCENAIFYVDPIDGLNKLYT 277 (439)
T ss_pred HHHhhhHHHHhcCCeEEEccHHHhhhHHHHHHhCCCCCCCcCccHHHHHHHHHhcCCeEEECCCCEEEEECCcCHHHHHH
Confidence 11111222233334455789999999999999999999999999999999964 69999999999999999999999999
Q ss_pred HhHhhhchhhHHHHHhchhhhhcCCCcc
Q 005700 449 QQHRWHSGPMQLFRLCLPDIIRAKISMG 476 (682)
Q Consensus 449 Qr~RW~~G~~~~~~~~~~~~l~~~l~~~ 476 (682)
||.||.+|.+|.++.+......+..++.
T Consensus 278 QR~RW~rG~~qv~~~~~~~~~~~~~~~~ 305 (439)
T TIGR03111 278 QRQRWQRGELEVSHMFFESANKSIKGFF 305 (439)
T ss_pred HHHHHhccHHHHHHHHHhhhhhchhhhh
Confidence 9999999999999877654433333333
No 6
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=100.00 E-value=1.8e-35 Score=339.33 Aligned_cols=270 Identities=21% Similarity=0.232 Sum_probs=212.5
Q ss_pred CCCCeEEEEeecCCch-----HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHH----HHHHHHhhcCCeEEEEe
Q 005700 218 GFFPMVLVQIPMCNEK-----EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIK----EEVLKWQEAGANIVYRH 288 (682)
Q Consensus 218 ~~~P~VsVvIP~yNE~-----~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~----~~~~~~~~~~v~v~~~~ 288 (682)
...|+|+|+||+|||+ +.++.+++|+.+|+|++ +++|+|+||++||++...-+ +.+++++ .+.++.|++
T Consensus 121 ~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~-~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~-~~~~i~yr~ 198 (691)
T PRK05454 121 PPEARTAILMPIYNEDPARVFAGLRAMYESLAATGHGA-HFDFFILSDTRDPDIAAAEEAAWLELRAELG-GEGRIFYRR 198 (691)
T ss_pred CCCCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCC-CEEEEEEECCCChhHHHHHHHHHHHHHHhcC-CCCcEEEEE
Confidence 4578999999999999 36899999999999975 78899999999999865432 2333332 256899999
Q ss_pred ccCCCCcchhhHHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHhhhhhhh
Q 005700 289 RILRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLS 368 (682)
Q Consensus 289 r~~~~g~KagaLn~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~~~~~ 368 (682)
|.+|.|.|+||+|.+++.. ..++||++++|||+++++|++.+++..|++||++|+||+++...|. +++++++|.+...
T Consensus 199 R~~n~~~KaGNl~~~~~~~-~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~vGlVQt~~~~~n~-~slfaR~qqf~~~ 276 (691)
T PRK05454 199 RRRNVGRKAGNIADFCRRW-GGAYDYMVVLDADSLMSGDTLVRLVRLMEANPRAGLIQTLPVAVGA-DTLFARLQQFATR 276 (691)
T ss_pred CCcCCCccHHHHHHHHHhc-CCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcCEEEEeCCccCcCC-CCHHHHHHHHHHH
Confidence 9999999999999999843 3678999999999999999999999999989999999999888887 4899999976543
Q ss_pred hhhHHHHhhcc-ccccccccccceEEEEeeeehhcC---------CCCCCCchhHHHHHHHHHHcCCeEEEecC-ceeee
Q 005700 369 FHFEVEQQVNG-VFINFFGFNGTAGVWRIKALEDSG---------GWMERTTVEDMDIAVRAHLRGWKFIFLND-VECQC 437 (682)
Q Consensus 369 ~~~~~~~~~~~-~~~~~~~~~G~~~~~Rr~al~~iG---------G~~~~~~~ED~~l~~rl~~~G~ki~y~~~-a~~~~ 437 (682)
.+......... ..++...+.|++.++|++++.++| +|..+.++||.+++.+++++||++.|+|+ ..+++
T Consensus 277 ~y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~~~~glp~L~g~~p~~~~~LseD~~~a~~l~~~GyrV~~~pd~~~~~e 356 (691)
T PRK05454 277 VYGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFAEHCGLPPLPGRGPFGGHILSHDFVEAALMRRAGWGVWLAPDLPGSYE 356 (691)
T ss_pred HHHHHHHhhhhhhccCccccccceEEEEHHHHHHhcCCccccccCCCCCCcccHHHHHHHHHHHCCCEEEEcCccccccc
Confidence 32222111111 111222378999999999998764 46667889999999999999999999999 56899
Q ss_pred ccCcCHHHHHHHhHhhhchhhHHHHHhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHH
Q 005700 438 ELPESYEAYRKQQHRWHSGPMQLFRLCLPDIIRAKISMGKKFNLIFLFFLLRKLILPFYS 497 (682)
Q Consensus 438 e~p~t~~~~~~Qr~RW~~G~~~~~~~~~~~~l~~~l~~~~k~~~l~~~~ll~~li~p~~~ 497 (682)
+.|+|++++.+||+||++|.+|.++... .+++++..|..++ ..++.++..|++.
T Consensus 357 e~P~tl~~~~~qr~RW~~G~lQ~l~~l~----~~gl~~~~R~~~l--~g~~~yl~~P~wl 410 (691)
T PRK05454 357 ELPPNLLDELKRDRRWCQGNLQHLRLLL----AKGLHPVSRLHFL--TGIMSYLSAPLWL 410 (691)
T ss_pred cCCCCHHHHHHHHHHHHhchHHHHHHHH----hcCCCHHHHHHHH--HHHHHHHHHHHHH
Confidence 9999999999999999999999876533 3456666666654 2344445555443
No 7
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=100.00 E-value=1.6e-36 Score=308.64 Aligned_cols=232 Identities=50% Similarity=0.887 Sum_probs=199.2
Q ss_pred CeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhH
Q 005700 221 PMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNL 300 (682)
Q Consensus 221 P~VsVvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaL 300 (682)
|+|||+||+|||++.+.++|+|+.+|+||.++++|+|+|| |+|.+.+.+++..+++...++++.++.+.++.|+|++|+
T Consensus 1 p~vSViIp~yNe~~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~~~G~k~~a~ 79 (232)
T cd06437 1 PMVTVQLPVFNEKYVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREIVEEYAAQGVNIKHVRRADRTGYKAGAL 79 (232)
T ss_pred CceEEEEecCCcHHHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHHHHHHhhcCCceEEEECCCCCCCchHHH
Confidence 6799999999999999999999999999988889999998 666777777777666666677888877777778899999
Q ss_pred HHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHhhhhhhhhhhHHHHhhccc
Q 005700 301 KSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGV 380 (682)
Q Consensus 301 n~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~~~~~~~~~~~~~~~~~ 380 (682)
|.|++ .+++|||+++|+|+.++|++|+++...+. +|++++|++.....+.+.+++.+.+.+.+.+++...+.....
T Consensus 80 n~g~~---~a~~~~i~~~DaD~~~~~~~l~~~~~~~~-~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (232)
T cd06437 80 AEGMK---VAKGEYVAIFDADFVPPPDFLQKTPPYFA-DPKLGFVQTRWGHINANYSLLTRVQAMSLDYHFTIEQVARSS 155 (232)
T ss_pred HHHHH---hCCCCEEEEEcCCCCCChHHHHHhhhhhc-CCCeEEEecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHhh
Confidence 99999 67999999999999999999999877765 699999999887778777888877776655444443333322
Q ss_pred cccccccccceEEEEeeeehhcCCCCCCCchhHHHHHHHHHHcCCeEEEecCceeeeccCcCHHHHHHHhHhhhchh
Q 005700 381 FINFFGFNGTAGVWRIKALEDSGGWMERTTVEDMDIAVRAHLRGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGP 457 (682)
Q Consensus 381 ~~~~~~~~G~~~~~Rr~al~~iGG~~~~~~~ED~~l~~rl~~~G~ki~y~~~a~~~~e~p~t~~~~~~Qr~RW~~G~ 457 (682)
.....+++|+++++||++++++|||++....||++++.|+..+||++.|+|++.++++.|+|++++++||.||.+|.
T Consensus 156 ~~~~~~~~g~~~~~rr~~~~~vgg~~~~~~~ED~~l~~rl~~~G~~~~~~~~~~v~~~~~~~~~~~~~q~~rW~~g~ 232 (232)
T cd06437 156 TGLFFNFNGTAGVWRKECIEDAGGWNHDTLTEDLDLSYRAQLKGWKFVYLDDVVVPAELPASMSAYRSQQHRWSKGP 232 (232)
T ss_pred cCCeEEeccchhhhhHHHHHHhCCCCCCcchhhHHHHHHHHHCCCeEEEeccceeeeeCCcCHHHHHHHHHHhccCC
Confidence 23334468999999999999999999888899999999999999999999999999999999999999999999984
No 8
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=100.00 E-value=6.1e-34 Score=316.36 Aligned_cols=286 Identities=18% Similarity=0.165 Sum_probs=203.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCccccCCCCCCCeEEEEeecCCchHHHHHHHHHH-HcC
Q 005700 168 QFLANACIVLFLIQSLDRLILCLGCFWIRFKRIKPVPKHDDTSDLESGQKGFFPMVLVQIPMCNEKEVYQQSIAAV-CNL 246 (682)
Q Consensus 168 ~~l~~~~~~lfli~~~~~l~~~~~~~~~~~~r~rp~~~~~~~~~~~~~~~~~~P~VsVvIP~yNE~~~l~~tL~Sl-~~q 246 (682)
..+..+..+++++.+++.+++-..++..+..|+..+... .+.. +......|+++|+||+|||+++|.++|+++ .++
T Consensus 16 ~~~~~~~~~~~~~~~~ddl~id~~y~~~~~~r~~~~~~~--~~~~-~l~~~~~p~vaIlIPA~NE~~vI~~~l~s~L~~l 92 (504)
T PRK14716 16 RVVLLVVAVLILLSGLDDLFIDAVYLARRLYRRRSRIPR--LSLA-TLRSVPEKRIAIFVPAWREADVIGRMLEHNLATL 92 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc--cChh-hcccCCCCceEEEEeccCchhHHHHHHHHHHHcC
Confidence 445556666777888888888666554443332111110 1101 111245899999999999999999999996 468
Q ss_pred CCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhhc---cc---CCccEEEEEcC
Q 005700 247 DWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCS---YV---KDYEFVAIFDA 320 (682)
Q Consensus 247 dYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~~---~~---a~~d~Vl~lDa 320 (682)
|||+ ++|+|+||++||.|.+.+++...+++ +++++...+. +..+|++|+|.+++.. .. .++|+|+++||
T Consensus 93 dY~~--~eIiVv~d~ndd~T~~~v~~l~~~~p--~v~~vv~~~~-gp~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DA 167 (504)
T PRK14716 93 DYEN--YRIFVGTYPNDPATLREVDRLAARYP--RVHLVIVPHD-GPTSKADCLNWIYQAIFAFERERGIRFAIIVLHDA 167 (504)
T ss_pred CCCC--eEEEEEECCCChhHHHHHHHHHHHCC--CeEEEEeCCC-CCCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcC
Confidence 9974 67999999999999888887665443 2444443333 3345999999999753 11 24599999999
Q ss_pred CCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCC-hHHHhhhhhhhhhhHHHHhhccccccccccccceEEEEeeee
Q 005700 321 DFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDEN-LLTRLQDINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKAL 399 (682)
Q Consensus 321 D~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~-l~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al 399 (682)
|+.++|++|+.+...+ ++.++||.+....+...+ +.+.....++...+..........+...+.+|+++++||+++
T Consensus 168 D~~v~Pd~Lr~~~~~~---~~~~~VQ~pv~~~~~~~~~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~~~Gtg~afRR~aL 244 (504)
T PRK14716 168 EDVIHPLELRLYNYLL---PRHDFVQLPVFSLPRDWGEWVAGTYMDEFAESHLKDLPVREALGGLIPSAGVGTAFSRRAL 244 (504)
T ss_pred CCCcCccHHHHHHhhc---CCCCEEecceeccCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCeeEEeEHHHH
Confidence 9999999999877655 445688877655544433 333333333332222222233344455567899999999999
Q ss_pred hhc-----CC-CCCCCchhHHHHHHHHHHcCCeEEEecCcee---------------eeccCcCHHHHHHHhHhhhchh-
Q 005700 400 EDS-----GG-WMERTTVEDMDIAVRAHLRGWKFIFLNDVEC---------------QCELPESYEAYRKQQHRWHSGP- 457 (682)
Q Consensus 400 ~~i-----GG-~~~~~~~ED~~l~~rl~~~G~ki~y~~~a~~---------------~~e~p~t~~~~~~Qr~RW~~G~- 457 (682)
+++ |+ |++++++||.++++++.++|||+.|+|++.+ .++.|.|++++++||.||..|.
T Consensus 245 e~l~~~~GG~~fd~~sLTED~dLglRL~~~G~rv~y~p~ai~~~~~~~~~~~~~v~t~e~~P~t~~a~~rQR~RW~~Gi~ 324 (504)
T PRK14716 245 ERLAAERGGQPFDSDSLTEDYDIGLRLKRAGFRQIFVRVRADDTTDRPDRRGEPIATREFFPDTFKAAVRQKARWIYGIA 324 (504)
T ss_pred HHHHhhcCCCCCCCCCcchHHHHHHHHHHCCCEEEEecccccccccccccccccccccccCccCHHHHHHHHHHHHhchH
Confidence 997 33 9999999999999999999999999999853 3668999999999999999995
Q ss_pred hHHHHHh
Q 005700 458 MQLFRLC 464 (682)
Q Consensus 458 ~~~~~~~ 464 (682)
+|.+++.
T Consensus 325 ~Q~~~~~ 331 (504)
T PRK14716 325 FQGWERL 331 (504)
T ss_pred HhhHHhc
Confidence 7887653
No 9
>PLN02893 Cellulose synthase-like protein
Probab=100.00 E-value=6.7e-34 Score=320.07 Aligned_cols=338 Identities=19% Similarity=0.256 Sum_probs=233.3
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCcccccccchhhhcccccchhhhhhHHHHHHHHHhHHHhhchhHHH
Q 005700 90 EIQKLRTRFFYSCIKLFLWLSVVLFAFELCAYFKGWHFATPNLQLQYIFQSPLAIKGAFDLLYSSWVLVRVHYLAPPLQF 169 (682)
Q Consensus 90 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~W~~~r~~~~~~~l~~ 169 (682)
|....|++.+||++.++.++++++++.+++. |.. .-+. -+.|
T Consensus 16 ~~~~~~~~~~~R~~~~~~~~~i~~ll~~r~~-----~~~--------------~~~~-----~~~w-------------- 57 (734)
T PLN02893 16 TCHPMRRTIANRVFAVVYSCAILALLYHHVI-----ALL--------------HSTT-----TLIT-------------- 57 (734)
T ss_pred eeeecCCchHHHHHHHHHHHHHHHHHHHHhc-----ccc--------------cccc-----hHHH--------------
Confidence 3444566667999999999999999888875 222 0010 1124
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC---CCCCCccccCCCCCCCeEEEEeec---CCch-HHHHHHHHH
Q 005700 170 LANACIVLFLIQSLDRLILCLGCFWIRFKRIKPVPK---HDDTSDLESGQKGFFPMVLVQIPM---CNEK-EVYQQSIAA 242 (682)
Q Consensus 170 l~~~~~~lfli~~~~~l~~~~~~~~~~~~r~rp~~~---~~~~~~~~~~~~~~~P~VsVvIP~---yNE~-~~l~~tL~S 242 (682)
+++++..+ ++.+..+.....|..|..+ .+++.... +++++|.|+|.|++ ++|+ -...+|+.|
T Consensus 58 -----~~~~~~e~----wf~f~W~l~q~~k~~Pv~r~~~~~~L~~~~--~~~~lP~vDvfv~TaDP~~Epp~~~~ntvLS 126 (734)
T PLN02893 58 -----LLLLLADI----VLAFMWATTQAFRMCPVHRRVFIEHLEHYA--KESDYPGLDVFICTADPYKEPPMGVVNTALS 126 (734)
T ss_pred -----HHHHHHHH----HHHHHHHHccCccccccccccCHHHHhhhc--ccccCCcceeeeccCCcccCchHHHHHHHHH
Confidence 22232222 2223223333344444433 22222211 12579999999999 5565 678899999
Q ss_pred HHcCCCCCCceEEEEEcCCCChhHHHHHHHH-------------------------------------------------
Q 005700 243 VCNLDWPKSKILIQVLDDSDDPTAQTLIKEE------------------------------------------------- 273 (682)
Q Consensus 243 l~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~------------------------------------------------- 273 (682)
+++.|||.+++.++|.|||.+.-|.+.+.|.
T Consensus 127 ilA~dyp~~kls~YvSDDGgs~lt~~al~Eaa~FA~~WvPFCrk~~ie~R~P~~YF~~~~~~~~~e~~~~k~~Yee~k~r 206 (734)
T PLN02893 127 VMAYDYPTEKLSVYVSDDGGSKLTLFAFMEAAKFATHWLPFCKKNKIVERCPEAYFSSNSHSWSPETEQIKMMYESMKVR 206 (734)
T ss_pred HHhhccCccceEEEEecCCccHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCccchHHHHHHHHHHHHHHH
Confidence 9999999999999999998876664433221
Q ss_pred H----------HH-------------Hh--------------------------hcCCeEEEEeccCC----CCcchhhH
Q 005700 274 V----------LK-------------WQ--------------------------EAGANIVYRHRILR----DGYKAGNL 300 (682)
Q Consensus 274 ~----------~~-------------~~--------------------------~~~v~v~~~~r~~~----~g~KagaL 300 (682)
+ ++ |. ..-++++|++|++| +++|||||
T Consensus 207 i~~~~~~~~~~~~~~~~~~~~~~f~~w~~~~~~~dH~~ivqV~l~~~~~~d~~g~~lP~lvYvsReKrp~~~Hh~KAGaL 286 (734)
T PLN02893 207 VENVVERGKVSTDYITCDQEREAFSRWTDKFTRQDHPTVIQVLLESGKDKDITGHTMPNLIYVSREKSKNSPHHFKAGAL 286 (734)
T ss_pred HHHHHhcCcCchhhhhhcccccccccCcCCCCCCCCCceeeeeccCCCccchhhccCCceEEEeCCCCCCCCcccccchH
Confidence 0 00 00 01235789999987 57999999
Q ss_pred HHHHhhc-ccCCccEEEEEcCCCCC-CHHHHHHHHHHhhc---CCCeeEEEeeeEeecCCCC-hHHHhhhhhhhhhhHHH
Q 005700 301 KSAMNCS-YVKDYEFVAIFDADFQP-NPDFLRRTVPHFKD---NEELGLVQARWSFVNKDEN-LLTRLQDINLSFHFEVE 374 (682)
Q Consensus 301 n~gl~~~-~~a~~d~Vl~lDaD~~~-~pd~L~~lv~~~~~---~p~vg~Vqg~~~~~n~~~~-l~t~~~~~~~~~~~~~~ 374 (682)
|.+++.+ ...+++||+++|||+.+ +|+++++++++|.+ +++++.||.++.+.|.+++ .+..-..+ .+...
T Consensus 287 N~llrvS~~~TngpfIl~lDcD~y~n~p~~l~~amcff~Dp~~~~~vafVQfPQ~F~~i~~~D~y~~~~~v----ff~~~ 362 (734)
T PLN02893 287 NTLLRVSATMTNAPIILTLDCDMYSNDPQTPLRALCYLLDPSMDPKLGYVQFPQIFHGINKNDIYAGELKR----LFQIN 362 (734)
T ss_pred HHHHHhhcccCCCCEEEEecCCcCCCchhHHHHHHHHhcCCCcCCceEEEeCcccccCCCcCCCCcchhHH----HHHHH
Confidence 9999975 24789999999999985 79999999999984 3479999999999887654 11111111 12222
Q ss_pred -HhhccccccccccccceEEEEeeeehh------------------------------------------------cCCC
Q 005700 375 -QQVNGVFINFFGFNGTAGVWRIKALED------------------------------------------------SGGW 405 (682)
Q Consensus 375 -~~~~~~~~~~~~~~G~~~~~Rr~al~~------------------------------------------------iGG~ 405 (682)
...++..+. .++|+++++||+++.. .+||
T Consensus 363 ~~glDG~~gp--~y~GTGc~~RR~al~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~v~sC~ye~~t~WG~~~G~ 440 (734)
T PLN02893 363 MIGMDGLAGP--NYVGTGCFFRRRVFYGGPSSLILPEIPELNPDHLVDKSIKSQEVLALAHHVAGCNYENQTNWGSKMGF 440 (734)
T ss_pred hhcccccCCc--eeeccceEEEHHHhcCCCccccchhhhhcccccccccccchHHHHHHhhhccccccccCCccccccce
Confidence 222333333 2789999999999831 1367
Q ss_pred CCCCchhHHHHHHHHHHcCCeEEEecC--ceeeeccCcCHHHHHHHhHhhhchhhHHHHHhchhhhh--cCCCcchhHHH
Q 005700 406 MERTTVEDMDIAVRAHLRGWKFIFLND--VECQCELPESYEAYRKQQHRWHSGPMQLFRLCLPDIIR--AKISMGKKFNL 481 (682)
Q Consensus 406 ~~~~~~ED~~l~~rl~~~G~ki~y~~~--a~~~~e~p~t~~~~~~Qr~RW~~G~~~~~~~~~~~~l~--~~l~~~~k~~~ 481 (682)
..++++||..++++++.+|||.+|++. ....+.+|+++.+++.||.||+.|.+|+++....+++. +++.+.+++..
T Consensus 441 ~ygsvtED~~Tg~~lh~~GWrSvY~~p~~~af~G~aP~~l~~~l~Q~~RWa~G~lqI~~s~~nPl~~g~~~L~~~Qrl~Y 520 (734)
T PLN02893 441 RYGSLVEDYYTGYRLQCEGWKSIFCNPKRPAFLGDSPINLHDVLNQQKRWSVGLLEVAFSKYSPITFGVKSIGLLMGLGY 520 (734)
T ss_pred EeccccccHHHHHHHHhcCCcEEecCCCchhhccCCCCCHHHHHHHHHHHHhhhHHHHhhccCchhhcccCCCHHHHHHH
Confidence 778899999999999999999999864 34689999999999999999999999998764444432 35666666544
Q ss_pred H
Q 005700 482 I 482 (682)
Q Consensus 482 l 482 (682)
+
T Consensus 521 ~ 521 (734)
T PLN02893 521 A 521 (734)
T ss_pred H
Confidence 3
No 10
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=100.00 E-value=1.4e-34 Score=296.36 Aligned_cols=237 Identities=27% Similarity=0.394 Sum_probs=193.2
Q ss_pred CeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhH
Q 005700 221 PMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNL 300 (682)
Q Consensus 221 P~VsVvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaL 300 (682)
|.|||+||+|||++.+.++|+|+.+|+||++.++|+|+||+|+|.+.+++++... ....+++......+. +|+.++
T Consensus 1 p~vsIiIp~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~---~~~~~i~~~~~~~~~-G~~~a~ 76 (241)
T cd06427 1 PVYTILVPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRL---PSIFRVVVVPPSQPR-TKPKAC 76 (241)
T ss_pred CeEEEEEecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhcc---CCCeeEEEecCCCCC-chHHHH
Confidence 7899999999999999999999999999987889999999999999988775421 123556655443444 499999
Q ss_pred HHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcC-CCeeEEEeeeEeecCCCChHHHhhhhhhhhhhHHHHhhcc
Q 005700 301 KSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDN-EELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNG 379 (682)
Q Consensus 301 n~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~-p~vg~Vqg~~~~~n~~~~l~t~~~~~~~~~~~~~~~~~~~ 379 (682)
|.|++ .+++|||+++|+|+.++|+++.+++..+.++ +++++++++....+...++.++....++...+........
T Consensus 77 n~g~~---~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (241)
T cd06427 77 NYALA---FARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNARENWLTRMFALEYAAWFDYLLPGLA 153 (241)
T ss_pred HHHHH---hcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 5899999999999999999999999999764 8999999988777766676666554443322222211112
Q ss_pred ccccccccccceEEEEeeeehhcCCCCCCCchhHHHHHHHHHHcCCeEEEecCceeeeccCcCHHHHHHHhHhhhchhhH
Q 005700 380 VFINFFGFNGTAGVWRIKALEDSGGWMERTTVEDMDIAVRAHLRGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGPMQ 459 (682)
Q Consensus 380 ~~~~~~~~~G~~~~~Rr~al~~iGG~~~~~~~ED~~l~~rl~~~G~ki~y~~~a~~~~e~p~t~~~~~~Qr~RW~~G~~~ 459 (682)
..+....++|+++++||++++++|||++....||.+++.|+.++|+++.+++.. ++++.|+|++.+.+||.||.+|.++
T Consensus 154 ~~~~~~~~~g~~~~~rr~~~~~vgg~~~~~~~eD~~l~~rl~~~G~r~~~~~~~-~~~~~~~~~~~~~~q~~Rw~~g~~~ 232 (241)
T cd06427 154 RLGLPIPLGGTSNHFRTDVLRELGGWDPFNVTEDADLGLRLARAGYRTGVLNST-TLEEANNALGNWIRQRSRWIKGYMQ 232 (241)
T ss_pred hcCCeeecCCchHHhhHHHHHHcCCCCcccchhhHHHHHHHHHCCceEEEeccc-ccccCcHhHHHHHHHHHHHhccHHH
Confidence 222333468999999999999999999888899999999999999999999875 5788999999999999999999999
Q ss_pred HHHHhc
Q 005700 460 LFRLCL 465 (682)
Q Consensus 460 ~~~~~~ 465 (682)
++..+.
T Consensus 233 ~~~~~~ 238 (241)
T cd06427 233 TWLVHM 238 (241)
T ss_pred HHHHHh
Confidence 997764
No 11
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=4.1e-33 Score=310.05 Aligned_cols=236 Identities=29% Similarity=0.490 Sum_probs=202.0
Q ss_pred CCeEEEEeecCCchH-HHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchh
Q 005700 220 FPMVLVQIPMCNEKE-VYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAG 298 (682)
Q Consensus 220 ~P~VsVvIP~yNE~~-~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~Kag 298 (682)
.|+|+|+||+|||++ +++++++|+++||||. ++|+|+||+++|++.+.+++...++. ...++. ..++++++|++
T Consensus 53 ~p~vsviiP~ynE~~~~~~~~l~s~~~~dyp~--~evivv~d~~~d~~~~~~~~~~~~~~-~~~~~~--~~~~~~~gK~~ 127 (439)
T COG1215 53 LPKVSVIIPAYNEEPEVLEETLESLLSQDYPR--YEVIVVDDGSTDETYEILEELGAEYG-PNFRVI--YPEKKNGGKAG 127 (439)
T ss_pred CCceEEEEecCCCchhhHHHHHHHHHhCCCCC--ceEEEECCCCChhHHHHHHHHHhhcC-cceEEE--eccccCccchH
Confidence 599999999999996 9999999999999997 66999999999999999988766432 123333 11245566999
Q ss_pred hHHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCC--CChHHHhhhhhhhhhhHHHHh
Q 005700 299 NLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKD--ENLLTRLQDINLSFHFEVEQQ 376 (682)
Q Consensus 299 aLn~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~--~~l~t~~~~~~~~~~~~~~~~ 376 (682)
|+|.|++ .+++|+|+++|||+.++||+|.++++.|.+ ++.+++++.....|.. .+++++.+.+++...+.....
T Consensus 128 al~~~l~---~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~-~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 203 (439)
T COG1215 128 ALNNGLK---RAKGDVVVILDADTVPEPDALRELVSPFED-PPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLR 203 (439)
T ss_pred HHHHHHh---hcCCCEEEEEcCCCCCChhHHHHHHhhhcC-CCeeEEeCCceeeecCChhhhcchhcchhhhhhHHHhhh
Confidence 9999999 578999999999999999999999999996 5555666665555555 688899999888776665555
Q ss_pred hccccccccccccceEEEEeeeehhcCCCCCCCchhHHHHHHHHHHcCCeEEEecCceeeeccCcCHHHHHHHhHhhhch
Q 005700 377 VNGVFINFFGFNGTAGVWRIKALEDSGGWMERTTVEDMDIAVRAHLRGWKFIFLNDVECQCELPESYEAYRKQQHRWHSG 456 (682)
Q Consensus 377 ~~~~~~~~~~~~G~~~~~Rr~al~~iGG~~~~~~~ED~~l~~rl~~~G~ki~y~~~a~~~~e~p~t~~~~~~Qr~RW~~G 456 (682)
..+..+....++|+++++||++++++|||.+.+++||.+++.+++.+||++.|++++.++++.|+|++++++||.||.+|
T Consensus 204 ~~~~~g~~~~~~G~~~~~rr~aL~~~g~~~~~~i~ED~~lt~~l~~~G~~~~~~~~~~~~~~~p~t~~~~~~Qr~RW~~g 283 (439)
T COG1215 204 AASKGGLISFLSGSSSAFRRSALEEVGGWLEDTITEDADLTLRLHLRGYRVVYVPEAIVWTEAPETLKELWRQRLRWARG 283 (439)
T ss_pred hhhhcCCeEEEcceeeeEEHHHHHHhCCCCCCceeccHHHHHHHHHCCCeEEEeecceEeeeCcccHHHHHHHHHHHHcc
Confidence 55555556668999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHh
Q 005700 457 PMQLFRLC 464 (682)
Q Consensus 457 ~~~~~~~~ 464 (682)
.++.+..+
T Consensus 284 ~~~~~~~~ 291 (439)
T COG1215 284 GLQVLLLH 291 (439)
T ss_pred cceeeehh
Confidence 99998764
No 12
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=100.00 E-value=1.9e-33 Score=289.25 Aligned_cols=233 Identities=21% Similarity=0.273 Sum_probs=189.4
Q ss_pred EEEEeecCCch-HHHHHHHHHHHc----CCCCCCceEEEEEcCCCChhHHHH----HHHHHHHHhhcCCeEEEEeccCCC
Q 005700 223 VLVQIPMCNEK-EVYQQSIAAVCN----LDWPKSKILIQVLDDSDDPTAQTL----IKEEVLKWQEAGANIVYRHRILRD 293 (682)
Q Consensus 223 VsVvIP~yNE~-~~l~~tL~Sl~~----qdYP~~~l~ViVvDD~sdd~t~~~----l~~~~~~~~~~~v~v~~~~r~~~~ 293 (682)
|||+||+|||+ +.+.++|.+.++ |+|++ +++|+|+||++|++.... +++.++++++ +++++|.+|.++.
T Consensus 1 ~SIliP~~ne~~~~l~~~l~~~~~~~~~~~~~~-~~eI~vldD~~d~~~~~~~~~~~~~l~~~~~~-~~~v~~~~r~~~~ 78 (254)
T cd04191 1 TAIVMPVYNEDPARVFAGLRAMYESLAKTGLAD-HFDFFILSDTRDPDIWLAEEAAWLDLCEELGA-QGRIYYRRRRENT 78 (254)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHHHhcCCcC-ceEEEEECCCCChHHHHHHHHHHHHHHHHhCC-CCcEEEEEcCCCC
Confidence 69999999999 458999999886 67733 478999999999876532 2234455544 7899999999999
Q ss_pred CcchhhHHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHhhhhhhhhhhHH
Q 005700 294 GYKAGNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEV 373 (682)
Q Consensus 294 g~KagaLn~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~~~~~~~~~~ 373 (682)
|.|++|+|.++... .+++|||+++|||+.++||+|.++++.|..+|++|+||+++.+.|.+ +++++++.++.......
T Consensus 79 g~Kag~l~~~~~~~-~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~vg~vq~~~~~~n~~-~~~~~~~~~~~~~~~~~ 156 (254)
T cd04191 79 GRKAGNIADFCRRW-GSRYDYMVVLDADSLMSGDTIVRLVRRMEANPRAGIIQTAPKLIGAE-TLFARLQQFANRLYGPV 156 (254)
T ss_pred CccHHHHHHHHHHh-CCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEeCCceeECCC-CHHHHHHHHHHHHHHHH
Confidence 99999999999731 36899999999999999999999999998789999999999998874 88999988764333222
Q ss_pred HHhhccc-cccccccccceEEEEeeeehhc---------CCCCCCCchhHHHHHHHHHHcCCeEEEecCce-eeeccCcC
Q 005700 374 EQQVNGV-FINFFGFNGTAGVWRIKALEDS---------GGWMERTTVEDMDIAVRAHLRGWKFIFLNDVE-CQCELPES 442 (682)
Q Consensus 374 ~~~~~~~-~~~~~~~~G~~~~~Rr~al~~i---------GG~~~~~~~ED~~l~~rl~~~G~ki~y~~~a~-~~~e~p~t 442 (682)
.+..... ......+.|+++++||++++++ |+|..+++.||++++++++.+||+++|.|++. ++++.|++
T Consensus 157 ~~~~~~~~~~~~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G~ri~~~~~~~~~~~~~p~~ 236 (254)
T cd04191 157 FGRGLAAWQGGEGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRAGWEVRLAPDLEGSYEECPPT 236 (254)
T ss_pred HHHHHHHhcCCccCccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHHHHHcCCEEEEccCCcceEeECCCC
Confidence 2222111 1122236799999999998874 35666789999999999999999999999987 58889999
Q ss_pred HHHHHHHhHhhhchhhH
Q 005700 443 YEAYRKQQHRWHSGPMQ 459 (682)
Q Consensus 443 ~~~~~~Qr~RW~~G~~~ 459 (682)
++++++||.||++|.+|
T Consensus 237 ~~~~~~qr~RW~~G~~q 253 (254)
T cd04191 237 LIDFLKRDRRWCQGNLQ 253 (254)
T ss_pred HHHHHHHHHHHHhhcCc
Confidence 99999999999999886
No 13
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=100.00 E-value=1.3e-31 Score=292.03 Aligned_cols=232 Identities=18% Similarity=0.243 Sum_probs=180.1
Q ss_pred CCCCeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCC--CCc
Q 005700 218 GFFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILR--DGY 295 (682)
Q Consensus 218 ~~~P~VsVvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~--~g~ 295 (682)
...|.|||+||+|||++.+++||+|+++|+||+ +||+|+||+++|.+.+++++..+++++..++ ++....+ .++
T Consensus 38 ~~~p~VSViiP~~nee~~l~~~L~Sl~~q~Yp~--~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~--~v~~~~~~G~~~ 113 (373)
T TIGR03472 38 RAWPPVSVLKPLHGDEPELYENLASFCRQDYPG--FQMLFGVQDPDDPALAVVRRLRADFPDADID--LVIDARRHGPNR 113 (373)
T ss_pred CCCCCeEEEEECCCCChhHHHHHHHHHhcCCCC--eEEEEEeCCCCCcHHHHHHHHHHhCCCCceE--EEECCCCCCCCh
Confidence 347899999999999999999999999999996 6788899999999999988776655443344 3333333 335
Q ss_pred chhhHHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHhhhhhhhhhhHHHH
Q 005700 296 KAGNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQ 375 (682)
Q Consensus 296 KagaLn~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~~~~~~~~~~~~ 375 (682)
|.+|++.+++ .+++|+++++|||+.++||+|++++..++ +|++++|++..... ..+++.++.........+....
T Consensus 114 K~~~l~~~~~---~a~ge~i~~~DaD~~~~p~~L~~lv~~~~-~~~v~~V~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~ 188 (373)
T TIGR03472 114 KVSNLINMLP---HARHDILVIADSDISVGPDYLRQVVAPLA-DPDVGLVTCLYRGR-PVPGFWSRLGAMGINHNFLPSV 188 (373)
T ss_pred HHHHHHHHHH---hccCCEEEEECCCCCcChhHHHHHHHHhc-CCCcceEeccccCC-CCCCHHHHHHHHHhhhhhhHHH
Confidence 8899998887 68999999999999999999999999997 69999999865432 2345656554432222221111
Q ss_pred hhccccccccccccceEEEEeeeehhcCCCCC--CCchhHHHHHHHHHHcCCeEEEecCceeeeccCcCHHHHHHHhHhh
Q 005700 376 QVNGVFINFFGFNGTAGVWRIKALEDSGGWME--RTTVEDMDIAVRAHLRGWKFIFLNDVECQCELPESYEAYRKQQHRW 453 (682)
Q Consensus 376 ~~~~~~~~~~~~~G~~~~~Rr~al~~iGG~~~--~~~~ED~~l~~rl~~~G~ki~y~~~a~~~~e~p~t~~~~~~Qr~RW 453 (682)
......+......|+++++||++++++|||++ +..+||.+++.++.++|+++.+.+++..++..++|++++++||.||
T Consensus 189 ~~~~~~~~~~~~~G~~~a~RR~~l~~iGGf~~~~~~~~ED~~l~~~i~~~G~~v~~~~~~v~~~~~~~s~~~~~~q~~RW 268 (373)
T TIGR03472 189 MVARALGRARFCFGATMALRRATLEAIGGLAALAHHLADDYWLGELVRALGLRVVLAPVVVDTDVHETSFATLLAHELRW 268 (373)
T ss_pred HHHHhccCCccccChhhheeHHHHHHcCChHHhcccchHHHHHHHHHHHcCCeEEecchhhhcCCCccCHHHHHHHHHHH
Confidence 11111111222579999999999999999985 4578999999999999999999999888888889999999999999
Q ss_pred hchhh
Q 005700 454 HSGPM 458 (682)
Q Consensus 454 ~~G~~ 458 (682)
.++..
T Consensus 269 ~r~~~ 273 (373)
T TIGR03472 269 SRTIR 273 (373)
T ss_pred Hhhhh
Confidence 86533
No 14
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=100.00 E-value=1.5e-31 Score=308.54 Aligned_cols=286 Identities=20% Similarity=0.195 Sum_probs=206.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCCCCCCCCCccccCCCCCCCeEEEEeecCCchHHHHHHHHHHH-
Q 005700 169 FLANACIVLFLIQSLDRLILCLGCFWIRFKRI---KPVPKHDDTSDLESGQKGFFPMVLVQIPMCNEKEVYQQSIAAVC- 244 (682)
Q Consensus 169 ~l~~~~~~lfli~~~~~l~~~~~~~~~~~~r~---rp~~~~~~~~~~~~~~~~~~P~VsVvIP~yNE~~~l~~tL~Sl~- 244 (682)
.+..+..+++++.+++.+++-..++.....|+ +++.+.... ++ ..++..|+|+|+||+|||+.++.+++++++
T Consensus 11 ~~~~~~~~~~~~~~~ddl~~d~~~~~~~~~~~~~~~~~~~~~~~-~~--l~~~~~~~vsIlVPa~nE~~vi~~~i~~ll~ 87 (727)
T PRK11234 11 VIAITLAVLMFISGLDDLFIDVVYWVRRIKRKLSVYRRYPRMSY-RE--LYKPDEKPLAIMVPAWNETGVIGNMAELAAT 87 (727)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhcccCCCCh-hh--cccCCCCCEEEEEecCcchhhHHHHHHHHHH
Confidence 34445566667777888877665543222211 111111110 11 122567999999999999999999999987
Q ss_pred cCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhhcc------cCCccEEEEE
Q 005700 245 NLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSY------VKDYEFVAIF 318 (682)
Q Consensus 245 ~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~~~------~a~~d~Vl~l 318 (682)
++|||+ ++|++++|.+|+.|.+.+++.+++++ +++++...+..+ ++|++|+|.+++... ..++|.++++
T Consensus 88 ~ldYP~--~eI~vi~~~nD~~T~~~~~~l~~~~p--~~~~v~~~~~g~-~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~ 162 (727)
T PRK11234 88 TLDYEN--YHIFVGTYPNDPATQADVDAVCARFP--NVHKVVCARPGP-TSKADCLNNVLDAITQFERSANFAFAGFILH 162 (727)
T ss_pred hCCCCC--eEEEEEecCCChhHHHHHHHHHHHCC--CcEEEEeCCCCC-CCHHHHHHHHHHHHHhhhcccCCcccEEEEE
Confidence 699997 77999999999999999988877553 345554444434 459999999998631 1256789999
Q ss_pred cCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCC-CChHHHhhhhhhhhhhHHHHhhccccccccccccceEEE-Ee
Q 005700 319 DADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKD-ENLLTRLQDINLSFHFEVEQQVNGVFINFFGFNGTAGVW-RI 396 (682)
Q Consensus 319 DaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~-~~l~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~-Rr 396 (682)
|||+.++||+|+ ++..+.+ +. ++||++....+.+ .++.+..+..++...+..........+...++.|++++| |+
T Consensus 163 DAD~~v~pd~L~-~~~~l~~-~~-~~VQ~p~~p~~~~~~~~~~~~~~~EFa~~~~~~~~~~~~lgg~~~l~G~~~af~Rr 239 (727)
T PRK11234 163 DAEDVISPMELR-LFNYLVE-RK-DLIQIPVYPFEREWTHFTSGTYIDEFAELHGKDVPVREALAGQVPSAGVGTCFSRR 239 (727)
T ss_pred cCCCCCChhHHH-HHHhhcC-CC-CeEeecccCCCccHHHHHHHHHHHHHHHHhhhhhHHHHHcCCCcccCCceEEEecc
Confidence 999999999998 5677763 55 8999975544432 234566666666654444333333443444689999999 66
Q ss_pred --eeehhcC---CCCCCCchhHHHHHHHHHHcCCeEEEec------C-----------------ceeeeccCcCHHHHHH
Q 005700 397 --KALEDSG---GWMERTTVEDMDIAVRAHLRGWKFIFLN------D-----------------VECQCELPESYEAYRK 448 (682)
Q Consensus 397 --~al~~iG---G~~~~~~~ED~~l~~rl~~~G~ki~y~~------~-----------------a~~~~e~p~t~~~~~~ 448 (682)
+++.+.| +|+.++++||++++.+++.+||++.|+| + +.++++.|.|+++.++
T Consensus 240 ~l~al~~~ggg~~~~~~~lTED~dlg~rL~~~G~~v~f~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~t~~~~~r 319 (727)
T PRK11234 240 AVTALLEDGDGIAFDVQSLTEDYDIGFRLKEKGMREIFVRFPVVDEAKEREQRKFLQHARTSNMICVREYFPDTFSAAVR 319 (727)
T ss_pred cHHHHHHhcCCCCcCCCcchHHHHHHHHHHHCCCEEEEcccccccccccccccccccccccccceEEEEeCchhHHHHHH
Confidence 4688887 6999999999999999999999999999 1 3377889999999999
Q ss_pred HhHhhhch-hhHHHHHhc
Q 005700 449 QQHRWHSG-PMQLFRLCL 465 (682)
Q Consensus 449 Qr~RW~~G-~~~~~~~~~ 465 (682)
||.||..| .+|.+....
T Consensus 320 QR~RW~~G~~~q~~~~~~ 337 (727)
T PRK11234 320 QKSRWIIGIVFQGFKTLG 337 (727)
T ss_pred HHHHHHcccHHHHHHHhC
Confidence 99999999 688887654
No 15
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=100.00 E-value=1.1e-31 Score=295.86 Aligned_cols=357 Identities=17% Similarity=0.253 Sum_probs=249.1
Q ss_pred CCCCeEEEEeecCCch-HHHHHHHHHHHcCCCCCCceEEEEEcC------CCChhHHHHHHHHHHHHh------------
Q 005700 218 GFFPMVLVQIPMCNEK-EVYQQSIAAVCNLDWPKSKILIQVLDD------SDDPTAQTLIKEEVLKWQ------------ 278 (682)
Q Consensus 218 ~~~P~VsVvIP~yNE~-~~l~~tL~Sl~~qdYP~~~l~ViVvDD------~sdd~t~~~l~~~~~~~~------------ 278 (682)
...+.+-.+||||||. +.+++||+|+..++||+.+-.++|+.| |.+.+|.+++.+......
T Consensus 22 ~~~~~~i~~v~cy~E~~~~l~~tldsl~~~~y~~~~k~~~vi~DG~i~g~g~~~~tp~~~l~~~~~~~~~~~~~~~~~~~ 101 (527)
T PF03142_consen 22 FPDKFVICLVPCYSEGEEELRTTLDSLATTDYDDSRKLIFVICDGMIKGSGNDKTTPEIVLDILGDFVDPPEDPEPLSYV 101 (527)
T ss_pred CCCceEEEEEccccCChHHHHHHHHHHHhcCCCCcccEEEEEcCcEEecCCCCCChHHHHHHhhcccCCCcCCCCCcceE
Confidence 3456788999999998 899999999999999987655666665 467778887765432000
Q ss_pred --------------------hcC-----------CeEEEEe-----------ccCCCCcchhhHHHHHhhc---------
Q 005700 279 --------------------EAG-----------ANIVYRH-----------RILRDGYKAGNLKSAMNCS--------- 307 (682)
Q Consensus 279 --------------------~~~-----------v~v~~~~-----------r~~~~g~KagaLn~gl~~~--------- 307 (682)
..+ +..+.+. ++.|.| |+..+-..+...
T Consensus 102 ~~~~g~~~~n~~~vy~g~y~~~~~~~~~~~~~~~vp~~~vvk~g~~~e~~~~k~~NrG-KRDsq~~~~~fl~~~~~~~~~ 180 (527)
T PF03142_consen 102 SLGEGSKQHNMAKVYSGFYEYDGDSHVPPEKQQRVPYIVVVKCGTPSERSSPKPGNRG-KRDSQILLMSFLNKVHFNNPM 180 (527)
T ss_pred EeccCchhhcCEEEEEEEEecCCccccccccccccCEEEEEEcCChHHhcccccccCC-chHHHHHHHHHHHHHhcCCCC
Confidence 001 2222221 233344 766432111100
Q ss_pred -----------------ccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHhhhhhhhhh
Q 005700 308 -----------------YVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFH 370 (682)
Q Consensus 308 -----------------~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~~~~~~~ 370 (682)
....+||++.+|||+.++|+++.+++..|.+||++++|+|.....|...++++..|.++|...
T Consensus 181 ~~~~~e~~~~i~~~~g~~~~~~~~il~~DaDt~~~p~~~~~lv~~m~~d~~i~gvCG~t~i~n~~~s~~t~~Q~fEY~is 260 (527)
T PF03142_consen 181 TPLELELFHQIWNIIGVDPDFYEYILMVDADTKFDPDSVNRLVDAMERDPKIGGVCGETRIDNKGQSWWTMYQVFEYAIS 260 (527)
T ss_pred chHHHHHHHHHHHHhccCccceEEEEEecCCceEcHHHHHHHHHHHcCCCCeEEEeceeEEcCCCCCHhhheeccchhHH
Confidence 124579999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhccccccccccccceEEEEeeeehhcC--------------CCCC-----------CCchhHHHHHHHHHHc--
Q 005700 371 FEVEQQVNGVFINFFGFNGTAGVWRIKALEDSG--------------GWME-----------RTTVEDMDIAVRAHLR-- 423 (682)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~iG--------------G~~~-----------~~~~ED~~l~~rl~~~-- 423 (682)
+...+..++.++.+.|++|++++||.++.+.-. ++.+ ...+||..++..+.++
T Consensus 261 h~l~Ka~Es~fG~VtCLPGcfsmyR~~a~~~~~~~~~p~l~~~~i~~~Y~~~~~dtlh~~nl~~lGEDR~LttLlLk~~~ 340 (527)
T PF03142_consen 261 HHLQKAFESVFGSVTCLPGCFSMYRISALMDGDGYWVPLLISPDIIEKYSENPVDTLHQKNLLDLGEDRWLTTLLLKQFP 340 (527)
T ss_pred HHHHHHHHHHhCceeecCCcceeeeeehhccccccccccccchHHHHHHhhccchHHHHHhhhhcchhHHHHHHHHhhCC
Confidence 999999999999999999999999999987621 1211 1478999999988888
Q ss_pred CCeEEEecCceeeeccCcCHHHHHHHhHhhhchhhHHHHHhchhhhhcCCCcchhHH--HHHHHHHHHHHHHHHHHHHHH
Q 005700 424 GWKFIFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCLPDIIRAKISMGKKFN--LIFLFFLLRKLILPFYSFTLF 501 (682)
Q Consensus 424 G~ki~y~~~a~~~~e~p~t~~~~~~Qr~RW~~G~~~~~~~~~~~~l~~~l~~~~k~~--~l~~~~ll~~li~p~~~f~~~ 501 (682)
|||+.|+|++.+++.+|++++.+++||+||..|.+.+....... .++.....+. ++....++..++.|.......
T Consensus 341 ~~k~~y~~~A~a~T~aP~t~~vflsQRRRWinSTi~Nl~eLl~~---~~l~g~~~fsm~fvvfi~Li~tiI~P~ti~~iI 417 (527)
T PF03142_consen 341 GYKTEYVPSAVAYTDAPETFSVFLSQRRRWINSTIHNLFELLLV---RDLCGFCCFSMRFVVFIDLIGTIILPATIVFII 417 (527)
T ss_pred CceEEEcccccccccCCccHHHHHHHhhhccchhHhhHhHHHHh---hhhcceeeecHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999998876543221 1111111222 222233555666675543332
Q ss_pred HHHHhhhhccccchhhHHHHHHHHHHHHHH--HhccCCCcchhHHHHHHHHHhHHHHHHHHHHHHHhhcCCcccEEeccC
Q 005700 502 CIILPMTMFIPEAELPAWVVCYIPATMSFL--NILPAPKSFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKK 579 (682)
Q Consensus 502 ~vilp~~~~~~~~~l~~~~~~~ip~~~~ll--~~~~~~~~~~~~~~~llf~~~~s~~~~~a~l~gl~~~~~~~~W~~T~K 579 (682)
+.+.-.... ....+++.+++++.++.+. ..+...+.+..+.++++|....++.++...+++++++. +++|+.|++
T Consensus 418 ylIv~~I~~--s~~~piIsLiLLAiIyGL~aIl~iL~~r~wq~i~wmiiYll~~P~~n~vLpiYSfwn~D-DFSWGtTR~ 494 (527)
T PF03142_consen 418 YLIVVSIFS--SDPVPIISLILLAIIYGLPAILFILRSRRWQYIGWMIIYLLALPFFNFVLPIYSFWNFD-DFSWGTTRV 494 (527)
T ss_pred HHhheehcc--cccccchHHHHHHHHHHHHhhhheecccHHHHHHHHHHHHHHHHHHHhHhhheeEEEec-ccccCCeee
Confidence 222211111 1112222222222222221 12233456666666667777788999999999999854 789999998
Q ss_pred CC
Q 005700 580 SG 581 (682)
Q Consensus 580 ~~ 581 (682)
..
T Consensus 495 v~ 496 (527)
T PF03142_consen 495 VV 496 (527)
T ss_pred ec
Confidence 53
No 16
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=100.00 E-value=1.1e-31 Score=272.10 Aligned_cols=231 Identities=33% Similarity=0.487 Sum_probs=185.7
Q ss_pred CeEEEEeecCCch-HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhh
Q 005700 221 PMVLVQIPMCNEK-EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGN 299 (682)
Q Consensus 221 P~VsVvIP~yNE~-~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~Kaga 299 (682)
|.|||+||+|||+ +.++++|+|+++|+||+++++|+|+||+|+|.+.+++++...+ .++.+.....+.|+|+++
T Consensus 1 p~vsviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 75 (234)
T cd06421 1 PTVDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELGVE-----YGYRYLTRPDNRHAKAGN 75 (234)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhhcc-----cCceEEEeCCCCCCcHHH
Confidence 6899999999986 7899999999999999877889999999999999888865331 134455556677889999
Q ss_pred HHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCC-hHHHhhhhhhhhhhHHHHhhc
Q 005700 300 LKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDEN-LLTRLQDINLSFHFEVEQQVN 378 (682)
Q Consensus 300 Ln~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~-l~t~~~~~~~~~~~~~~~~~~ 378 (682)
+|.|++ .+++|||+++|+|+.++|++|.+++..+.++|++++|++.....+.+.. ...+.................
T Consensus 76 ~n~~~~---~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (234)
T cd06421 76 LNNALA---HTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGR 152 (234)
T ss_pred HHHHHH---hCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 999999 5799999999999999999999999999877999999998776655432 122111111111111111111
Q ss_pred cccccccccccceEEEEeeeehhcCCCCCCCchhHHHHHHHHHHcCCeEEEecCceeeeccCcCHHHHHHHhHhhhchhh
Q 005700 379 GVFINFFGFNGTAGVWRIKALEDSGGWMERTTVEDMDIAVRAHLRGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGPM 458 (682)
Q Consensus 379 ~~~~~~~~~~G~~~~~Rr~al~~iGG~~~~~~~ED~~l~~rl~~~G~ki~y~~~a~~~~e~p~t~~~~~~Qr~RW~~G~~ 458 (682)
.. .+...++|+++++||++++++|||++....||.+++.+++++||++.|+|++.++++.|.+++.+++|+.||..|.+
T Consensus 153 ~~-~~~~~~~g~~~~~r~~~~~~ig~~~~~~~~eD~~l~~r~~~~g~~i~~~~~~~~~~~~~~~~~~~~~q~~rw~~~~~ 231 (234)
T cd06421 153 DR-WGAAFCCGSGAVVRREALDEIGGFPTDSVTEDLATSLRLHAKGWRSVYVPEPLAAGLAPETLAAYIKQRLRWARGML 231 (234)
T ss_pred hh-cCCceecCceeeEeHHHHHHhCCCCccceeccHHHHHHHHHcCceEEEecCccccccCCccHHHHHHHHHHHhcCCe
Confidence 11 12333689999999999999999998888999999999999999999999999999999999999999999999987
Q ss_pred HH
Q 005700 459 QL 460 (682)
Q Consensus 459 ~~ 460 (682)
++
T Consensus 232 ~~ 233 (234)
T cd06421 232 QI 233 (234)
T ss_pred ee
Confidence 64
No 17
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=99.98 E-value=1.8e-31 Score=271.72 Aligned_cols=233 Identities=27% Similarity=0.501 Sum_probs=183.3
Q ss_pred EEEeecCCch-HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHH-HHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHH
Q 005700 224 LVQIPMCNEK-EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQ-TLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLK 301 (682)
Q Consensus 224 sVvIP~yNE~-~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~-~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn 301 (682)
||+||+|||+ +.++++++|+.+|+||+ ++|+|+||+|+|.+. +.+++.+.+ .+.++.++...++.|+|++|+|
T Consensus 1 siiip~~ne~~~~l~~~l~sl~~q~~~~--~eiiVvdd~s~D~t~~~~i~~~~~~---~~~~i~~i~~~~~~G~~~~a~n 75 (236)
T cd06435 1 SIHVPCYEEPPEMVKETLDSLAALDYPN--FEVIVIDNNTKDEALWKPVEAHCAQ---LGERFRFFHVEPLPGAKAGALN 75 (236)
T ss_pred CeeEeeCCCcHHHHHHHHHHHHhCCCCC--cEEEEEeCCCCchhHHHHHHHHHHH---hCCcEEEEEcCCCCCCchHHHH
Confidence 6999999998 89999999999999996 568899998887764 555555442 2345555555666777999999
Q ss_pred HHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHhhhhhhhhhhHHHHhhcccc
Q 005700 302 SAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGVF 381 (682)
Q Consensus 302 ~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~~~~~~~~~~~~~~~~~~ 381 (682)
.|++.+ ..++|||+++|+|+.++|++|.+++..++ ++++++|+++....+...+.+.+.....+...+........ .
T Consensus 76 ~g~~~a-~~~~d~i~~lD~D~~~~~~~l~~l~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 152 (236)
T cd06435 76 YALERT-APDAEIIAVIDADYQVEPDWLKRLVPIFD-DPRVGFVQAPQDYRDGEESLFKRMCYAEYKGFFDIGMVSRN-E 152 (236)
T ss_pred HHHHhc-CCCCCEEEEEcCCCCcCHHHHHHHHHHhc-CCCeeEEecCccccCCCccHHHHHHhHHHHHHHHHHhcccc-c
Confidence 999953 23489999999999999999999999997 69999999875555544455544333322212221111111 1
Q ss_pred ccccccccceEEEEeeeehhcCCCCCCCchhHHHHHHHHHHcCCeEEEecCceeeeccCcCHHHHHHHhHhhhchhhHHH
Q 005700 382 INFFGFNGTAGVWRIKALEDSGGWMERTTVEDMDIAVRAHLRGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGPMQLF 461 (682)
Q Consensus 382 ~~~~~~~G~~~~~Rr~al~~iGG~~~~~~~ED~~l~~rl~~~G~ki~y~~~a~~~~e~p~t~~~~~~Qr~RW~~G~~~~~ 461 (682)
......+|+++++||++++++|||++....||.+++.|+.++||++.++|++.+++..|.++.++.+||.||..|.++.+
T Consensus 153 ~~~~~~~g~~~~~rr~~~~~iGgf~~~~~~eD~dl~~r~~~~G~~~~~~~~~~~~~~~~~~~~~~~~q~~rw~~g~~~~~ 232 (236)
T cd06435 153 RNAIIQHGTMCLIRRSALDDVGGWDEWCITEDSELGLRMHEAGYIGVYVAQSYGHGLIPDTFEAFKKQRFRWAYGAVQIL 232 (236)
T ss_pred cCceEEecceEEEEHHHHHHhCCCCCccccchHHHHHHHHHCCcEEEEcchhhccCcCcccHHHHHHHHHHHhcchhhhh
Confidence 12233679999999999999999998888999999999999999999999999999999999999999999999999998
Q ss_pred HHh
Q 005700 462 RLC 464 (682)
Q Consensus 462 ~~~ 464 (682)
++|
T Consensus 233 ~~~ 235 (236)
T cd06435 233 KKH 235 (236)
T ss_pred hcc
Confidence 765
No 18
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=99.98 E-value=3.9e-32 Score=279.04 Aligned_cols=205 Identities=21% Similarity=0.291 Sum_probs=175.6
Q ss_pred EEeecCCch-HHHHHHHHHHHcCCCC--------CCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCc
Q 005700 225 VQIPMCNEK-EVYQQSIAAVCNLDWP--------KSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGY 295 (682)
Q Consensus 225 VvIP~yNE~-~~l~~tL~Sl~~qdYP--------~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~ 295 (682)
|+||+|||+ ++|+++|+|+++|+|| .++++|+|+||||+| .+.|
T Consensus 1 v~ip~yNE~~~~i~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dgs~d--------------------------~~~g- 53 (244)
T cd04190 1 VCVTMYNEDEEELARTLDSILKNDYPFCARGGDSWKKIVVCVIFDGAIK--------------------------KNRG- 53 (244)
T ss_pred CEEeeecCCHHHHHHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCCccc--------------------------ccCc-
Confidence 689999997 8999999999999999 778999999999988 1223
Q ss_pred chh-------hHHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHhhhhhhh
Q 005700 296 KAG-------NLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLS 368 (682)
Q Consensus 296 Kag-------aLn~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~~~~~ 368 (682)
|.. ++|.++. .+++|||+++|||+.++||+|++++..|..+|++++|++.....|...++++..|.+++.
T Consensus 54 k~~~~~~~~~~~~~~~~---~a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~~~~~~~~~~~~q~~ey~ 130 (244)
T cd04190 54 KRDSQLWFFNYFCRVLF---PDDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHPMGKKQGPLVMYQVFEYA 130 (244)
T ss_pred chHHHHHHHHHHHHHhh---cCCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEEcCCcchhHHHhHheehh
Confidence 444 3444554 579999999999999999999999999977899999999988888777899999998886
Q ss_pred hhhHHHHhhccccccccccccceEEEEeeeehhcCCCCC--------------------CCchhHHHHHHHHHHcCCeEE
Q 005700 369 FHFEVEQQVNGVFINFFGFNGTAGVWRIKALEDSGGWME--------------------RTTVEDMDIAVRAHLRGWKFI 428 (682)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~iGG~~~--------------------~~~~ED~~l~~rl~~~G~ki~ 428 (682)
......+...+.++.+.+++|++++||++++++.||+.. ..++||.+++.++.++||++.
T Consensus 131 ~~~~~~~~~~s~~g~~~~~~G~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l~~~l~~~G~~~~ 210 (244)
T cd04190 131 ISHWLDKAFESVFGFVTCLPGCFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKAGPKRK 210 (244)
T ss_pred hhhhhcccHHHcCCceEECCCceEEEEehhhcCCccccccchhhccccCcccchHHHHHHhHhcccceeHHHhccCCccE
Confidence 555544555556666777999999999999999976532 236899999999999999999
Q ss_pred E--ecCceeeeccCcCHHHHHHHhHhhhchhhH
Q 005700 429 F--LNDVECQCELPESYEAYRKQQHRWHSGPMQ 459 (682)
Q Consensus 429 y--~~~a~~~~e~p~t~~~~~~Qr~RW~~G~~~ 459 (682)
| +|++.++++.|+|++++++||.||.+|.+.
T Consensus 211 ~~~~~~a~~~~~~p~s~~~~~~QR~RW~~g~~~ 243 (244)
T cd04190 211 YLYVPGAVAETDVPETFVELLSQRRRWINSTIA 243 (244)
T ss_pred EEEecccEEEEECCCCHHHHHHHhHhhhccccc
Confidence 9 999999999999999999999999999764
No 19
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=99.98 E-value=4.5e-33 Score=281.81 Aligned_cols=226 Identities=27% Similarity=0.439 Sum_probs=157.1
Q ss_pred CeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCC--cchh
Q 005700 221 PMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDG--YKAG 298 (682)
Q Consensus 221 P~VsVvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g--~Kag 298 (682)
|+|+|+||+|||++.+.++|+|+++|+|| +++|+|+||++++.+.+.+++..++++..+++ ++.+..+.| +|+.
T Consensus 1 P~v~Vvip~~~~~~~l~~~l~sl~~~~~~--~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~--vi~~~~~~g~~~k~~ 76 (228)
T PF13641_consen 1 PRVSVVIPAYNEDDVLRRCLESLLAQDYP--RLEVVVVDDGSDDETAEILRALAARYPRVRVR--VIRRPRNPGPGGKAR 76 (228)
T ss_dssp --EEEE--BSS-HHHHHHHHHHHTTSHHH--TEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEE--EEE----HHHHHHHH
T ss_pred CEEEEEEEecCCHHHHHHHHHHHHcCCCC--CeEEEEEECCCChHHHHHHHHHHHHcCCCceE--EeecCCCCCcchHHH
Confidence 78999999999999999999999999996 47899999999998888888777665543444 444443333 6999
Q ss_pred hHHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHhhhhhhhhhhHHHHhhc
Q 005700 299 NLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVN 378 (682)
Q Consensus 299 aLn~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~~~~~~~~~~~~~~~ 378 (682)
++|.|++ ..++|+|+++|+|+.++|++|++++..+ .+|++++|++.....+ ++++++..+...+...+.......
T Consensus 77 a~n~~~~---~~~~d~i~~lD~D~~~~p~~l~~~~~~~-~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 151 (228)
T PF13641_consen 77 ALNEALA---AARGDYILFLDDDTVLDPDWLERLLAAF-ADPGVGAVGGPVFPDN-DRNWLTRLQDLFFARWHLRFRSGR 151 (228)
T ss_dssp HHHHHHH---H---SEEEEE-SSEEE-CHHHHHHHHHH-HBSS--EEEEEEEETT-CCCEEEE-TT--S-EETTTS-TT-
T ss_pred HHHHHHH---hcCCCEEEEECCCcEECHHHHHHHHHHH-HhCCCCeEeeeEeecC-CCCHHHHHHHHHHhhhhhhhhhhh
Confidence 9999999 5689999999999999999999999999 4699999999886654 566666665544322222222222
Q ss_pred cccccccccccceEEEEeeeehhcCCCCCCCchhHHHHHHHHHHcCCeEEEecCceeeeccCcCHHHHHHHhHhhhch
Q 005700 379 GVFINFFGFNGTAGVWRIKALEDSGGWMERTTVEDMDIAVRAHLRGWKFIFLNDVECQCELPESYEAYRKQQHRWHSG 456 (682)
Q Consensus 379 ~~~~~~~~~~G~~~~~Rr~al~~iGG~~~~~~~ED~~l~~rl~~~G~ki~y~~~a~~~~e~p~t~~~~~~Qr~RW~~G 456 (682)
... ++.+++|+++++|+++++++|||++...+||.+++.++.++||++.|+|++.++++.|.+++++.+||.||.+|
T Consensus 152 ~~~-~~~~~~G~~~~~rr~~~~~~g~fd~~~~~eD~~l~~r~~~~G~~~~~~~~~~v~~~~~~~~~~~~~q~~RW~~g 228 (228)
T PF13641_consen 152 RAL-GVAFLSGSGMLFRRSALEEVGGFDPFILGEDFDLCLRLRAAGWRIVYAPDALVYHEEPSSLKAFFKQRFRWSRG 228 (228)
T ss_dssp B-----S-B--TEEEEEHHHHHHH-S--SSSSSHHHHHHHHHHHTT--EEEEEEEEEEE--SSSTHHHHHHHHHHH--
T ss_pred ccc-ceeeccCcEEEEEHHHHHHhCCCCCCCcccHHHHHHHHHHCCCcEEEECCcEEEEeCCCCHHHHHHHHhccCcC
Confidence 222 34457899999999999999999998889999999999999999999999999999999999999999999987
No 20
>PLN02189 cellulose synthase
Probab=99.97 E-value=5.7e-30 Score=293.67 Aligned_cols=259 Identities=21% Similarity=0.338 Sum_probs=195.0
Q ss_pred CCCCeEEEEeecCCch----HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHH--------------------
Q 005700 218 GFFPMVLVQIPMCNEK----EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEE-------------------- 273 (682)
Q Consensus 218 ~~~P~VsVvIP~yNE~----~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~-------------------- 273 (682)
+.+|.|+|+|++-+.. -...+|+.|+++.|||.+++.++|.|||...-|-+.+.+.
T Consensus 328 ~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~WvPFCkK~~IepRa 407 (1040)
T PLN02189 328 NMLSPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYVSDDGASMLTFEALSETAEFARKWVPFCKKFSIEPRA 407 (1040)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCC
Confidence 4599999999998765 5788999999999999999999999998877664433221
Q ss_pred -------------------------------------HH----H--------H--------h---------------h--
Q 005700 274 -------------------------------------VL----K--------W--------Q---------------E-- 279 (682)
Q Consensus 274 -------------------------------------~~----~--------~--------~---------------~-- 279 (682)
++ + + + +
T Consensus 408 Pe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~kvRI~~l~a~~~~~p~~~~~m~dGt~W~g~~~~dHp~IiQVll~~~ 487 (1040)
T PLN02189 408 PEFYFSLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVAKAQKVPPEGWIMQDGTPWPGNNTRDHPGMIQVFLGHS 487 (1040)
T ss_pred HHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCccceeccCccCCCCCCCCCHHHHHHHhcCC
Confidence 00 0 0 0 0
Q ss_pred --------cCCeEEEEeccCCCC----cchhhHHHHHhhc-ccCCccEEEEEcCCCCC-CHHHHHHHHHHhhcCC----C
Q 005700 280 --------AGANIVYRHRILRDG----YKAGNLKSAMNCS-YVKDYEFVAIFDADFQP-NPDFLRRTVPHFKDNE----E 341 (682)
Q Consensus 280 --------~~v~v~~~~r~~~~g----~KagaLn~gl~~~-~~a~~d~Vl~lDaD~~~-~pd~L~~lv~~~~~~p----~ 341 (682)
.-++++|+.|+++.| +||||||..++.+ ...+++||+.+|+|+.+ +|+.+++++++|. || +
T Consensus 488 ~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmY~Nns~alr~AMCffl-Dp~~g~~ 566 (1040)
T PLN02189 488 GGHDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLM-DPQIGRK 566 (1040)
T ss_pred CCccccccccceeEEEeccCCCCCCcccchhhHHHHHHHhhhccCCCeEEEccCccccCchHHHHHhhhhhc-CCccCce
Confidence 013489999998755 8999999999876 46899999999999977 5799999999998 46 8
Q ss_pred eeEEEeeeEeecCCCC-hHHHhhhhhhhhhhHHHHhhccccccccccccceEEEEeeeehhc------------------
Q 005700 342 LGLVQARWSFVNKDEN-LLTRLQDINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEDS------------------ 402 (682)
Q Consensus 342 vg~Vqg~~~~~n~~~~-l~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~i------------------ 402 (682)
++.||.+|.|.|.+++ .+..-..+.+. ...+..++..+.+ +.||++++||+++-..
T Consensus 567 vAfVQFPQrF~~i~k~D~Ygn~~~vffd---i~~~GlDGlqGP~--YvGTGC~fRR~ALyG~~p~~~~~~~~~~~~~~~~ 641 (1040)
T PLN02189 567 VCYVQFPQRFDGIDTHDRYANRNTVFFD---INMKGLDGIQGPV--YVGTGCVFRRQALYGYDPPKGPKRPKMVTCDCCP 641 (1040)
T ss_pred eEEEeCccccCCCCCCCccCCccceeee---eeecccccCCCcc--ccccCceeeeeeeeccCcccccccccccccchhh
Confidence 9999999999988754 22221111111 2223334443333 7899999999987521
Q ss_pred --------------------------------------------------------------------------------
Q 005700 403 -------------------------------------------------------------------------------- 402 (682)
Q Consensus 403 -------------------------------------------------------------------------------- 402 (682)
T Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~~~l~eA~~V~sC~YE 721 (1040)
T PLN02189 642 CFGRRKKKHAKNGLNGEVAALGGMESDKEMLMSQMNFEKKFGQSAIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYE 721 (1040)
T ss_pred hcccccccccccccccccccccccchhhhhhhhhhhhHhhhccchhhhhhhhhhhcCCCCCCCcHHHHHHHHHhhccccc
Confidence
Q ss_pred -----C---CCCCCCchhHHHHHHHHHHcCCeEEEec--CceeeeccCcCHHHHHHHhHhhhchhhHHHHHhchhhhh--
Q 005700 403 -----G---GWMERTTVEDMDIAVRAHLRGWKFIFLN--DVECQCELPESYEAYRKQQHRWHSGPMQLFRLCLPDIIR-- 470 (682)
Q Consensus 403 -----G---G~~~~~~~ED~~l~~rl~~~G~ki~y~~--~a~~~~e~p~t~~~~~~Qr~RW~~G~~~~~~~~~~~~l~-- 470 (682)
| ||..++++||+.++++++.+|||.+|+. ...+.+.+|+++.+++.||.||+.|.+|+++....+++.
T Consensus 722 ~~T~WG~evGw~YGSvTED~~TG~rlH~rGWrSvY~~p~r~AF~GlAP~~L~~~L~Qr~RWA~G~lqI~~sr~nPl~~g~ 801 (1040)
T PLN02189 722 DKTDWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIFFSRHSPLLYGY 801 (1040)
T ss_pred cCCchhhccCeeccccccHHHHHHHHHccCCceEecCCCcHHhcCcCCCCHHHHHHHHHHHhhhhHHHhhccCCcccccc
Confidence 0 4555578999999999999999999995 344789999999999999999999999999855444442
Q ss_pred --cCCCcchhHHHH
Q 005700 471 --AKISMGKKFNLI 482 (682)
Q Consensus 471 --~~l~~~~k~~~l 482 (682)
+++.+.+++..+
T Consensus 802 ~~~~L~l~QRL~Yl 815 (1040)
T PLN02189 802 KGGNLKWLERFAYV 815 (1040)
T ss_pred CCCCCCHHHHHHHH
Confidence 346666665443
No 21
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.97 E-value=5.2e-29 Score=283.78 Aligned_cols=291 Identities=18% Similarity=0.129 Sum_probs=203.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCCCCCCccccCCCCCCCeEEEEeecCCchHHHHHHHHHHH
Q 005700 166 PLQFLANACIVLFLIQSLDRLILCLGCFWIRFKRI-KPVPKHDDTSDLESGQKGFFPMVLVQIPMCNEKEVYQQSIAAVC 244 (682)
Q Consensus 166 ~l~~l~~~~~~lfli~~~~~l~~~~~~~~~~~~r~-rp~~~~~~~~~~~~~~~~~~P~VsVvIP~yNE~~~l~~tL~Sl~ 244 (682)
.+..+..+..+++++.+++.+++-..++..+..|+ ....+..+..+ .+..+...|+++|+||+|||++++.++|++++
T Consensus 16 ~~~~~~~~~~~~~~i~~~ddl~~d~~yw~r~~~r~~~~~~~~~~~~~-~~l~~~~~~~vsIlVPa~nE~~VI~~~v~~ll 94 (703)
T PRK15489 16 VLETAAVATALVILISSLDDLFIDAWYWVRELYRWLTRERRYRPLTA-EQLRERDEQPLAIMVPAWKEYDVIAKMIENML 94 (703)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccccCCCCCh-HHhcccCCCceEEEEeCCCcHHHHHHHHHHHH
Confidence 34445556666777888888888765443322221 11111111111 11222567899999999999999999999986
Q ss_pred -cCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhhc---c-cCC--ccEEEE
Q 005700 245 -NLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCS---Y-VKD--YEFVAI 317 (682)
Q Consensus 245 -~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~~---~-~a~--~d~Vl~ 317 (682)
++|||+ ++|+|+.+.+|.+|.+.+++....++ .++++...+..++ +|+.|||.+++.. . ... .+.|++
T Consensus 95 ~~ldYp~--~~I~v~~~~nD~~T~~~~~~~~~~~p--~~~~v~~~~~gp~-gKa~ALN~~l~~~~~~e~~~~~~fa~vvi 169 (703)
T PRK15489 95 ATLDYRR--YVIFVGTYPNDAETITEVERMRRRYK--RLVRVEVPHDGPT-CKADCLNWIIQAIFRYEAGHGIEFAGVIL 169 (703)
T ss_pred hcCCCCC--eEEEEEecCCCccHHHHHHHHhccCC--cEEEEEcCCCCCC-CHHHHHHHHHHHHHhhhhhccCccceEEE
Confidence 789996 56777544444466666665543221 3444433333334 4999999999853 1 112 345999
Q ss_pred EcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeE-eecCCCChHHHhhhhhhhhhhHHHHhhccccccccccccceEEEEe
Q 005700 318 FDADFQPNPDFLRRTVPHFKDNEELGLVQARWS-FVNKDENLLTRLQDINLSFHFEVEQQVNGVFINFFGFNGTAGVWRI 396 (682)
Q Consensus 318 lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~-~~n~~~~l~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr 396 (682)
.|||+.++|+.|+.+ .++..++ .++|++.. ..|...+++++.+..+|...+..........+...+..|++++|||
T Consensus 170 ~DAEd~~~P~~L~~~-~~~~~~~--~~iQ~pV~~~~~~~~~~l~~~~~~Efa~~~~~~l~~r~~l~~~ipl~Gv~~~frr 246 (703)
T PRK15489 170 HDSEDVLHPLELKYF-NYLLPRK--DLVQLPVLSLERKWYEWVAGTYMDEFAEWHQKDLVVRESLTGTVPSAGVGTCFSR 246 (703)
T ss_pred EcCCCCCChhHHHHH-HhhcCCc--ceeeeeeccCCCccccHHHHHHHHHHHHHhhhHHHHHHHcCCceeccCcceeeeH
Confidence 999999999999877 4554344 57887643 4566678999999999988777655555444455578999999999
Q ss_pred eeehhc---CC---CCCCCchhHHHHHHHHHHcCCeEEEec-----------------------CceeeeccCcCHHHHH
Q 005700 397 KALEDS---GG---WMERTTVEDMDIAVRAHLRGWKFIFLN-----------------------DVECQCELPESYEAYR 447 (682)
Q Consensus 397 ~al~~i---GG---~~~~~~~ED~~l~~rl~~~G~ki~y~~-----------------------~a~~~~e~p~t~~~~~ 447 (682)
++++++ || |+.++++||.|+++|++++||++.++- ...+.++.|.|+++..
T Consensus 247 ~aL~~l~~~gg~~~~n~~sLTED~Dlg~RL~~~G~r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~tre~fP~~~~a~~ 326 (703)
T PRK15489 247 RALLALMKERGNQPFNTSSLTEDYDFSFRLAELGMQEIFVRFPVQFRVRRTSWFGPRRERTREMLLCVREYFPDTFRTAY 326 (703)
T ss_pred HHHHHHHHhcCCCCCCCCCchHhHHHHHHHHHCCCceEEEEEeccccccccccccccccccccCceeehhhCcHHHHHHH
Confidence 998876 54 666788999999999999999999921 1335667899999999
Q ss_pred HHhHhhhchhh-HHHHHhc
Q 005700 448 KQQHRWHSGPM-QLFRLCL 465 (682)
Q Consensus 448 ~Qr~RW~~G~~-~~~~~~~ 465 (682)
+||.||..|-. |.+....
T Consensus 327 rQk~RW~~Gi~~q~~~~~g 345 (703)
T PRK15489 327 RQKARWVLGIAFQGWEQMG 345 (703)
T ss_pred HHHHHHHhHHHHhhHHHhC
Confidence 99999999965 8876643
No 22
>PLN02195 cellulose synthase A
Probab=99.97 E-value=9.8e-30 Score=290.34 Aligned_cols=259 Identities=20% Similarity=0.310 Sum_probs=192.8
Q ss_pred CCCCeEEEEeecCCch----HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHH--------------------
Q 005700 218 GFFPMVLVQIPMCNEK----EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEE-------------------- 273 (682)
Q Consensus 218 ~~~P~VsVvIP~yNE~----~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~-------------------- 273 (682)
+++|.|+|+|++-+.. -...+|+.|+++.|||.+++.++|.|||...-|-+.+.+.
T Consensus 249 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~WvPFCkK~~IepRa 328 (977)
T PLN02195 249 SQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLVETAEFARKWVPFCKKYSIEPRA 328 (977)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCC
Confidence 5699999999998765 5788999999999999999999999998877664433221
Q ss_pred -----------------------------------------HHH--------H--------h------------------
Q 005700 274 -----------------------------------------VLK--------W--------Q------------------ 278 (682)
Q Consensus 274 -----------------------------------------~~~--------~--------~------------------ 278 (682)
.++ + +
T Consensus 329 Pe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~k~RIe~~~~~~~~~~~~~~~m~d~t~W~g~~~~dHp~IIqVll~~~ 408 (977)
T PLN02195 329 PEFYFSQKIDYLKDKVQPSFVKERRAMKRDYEEYKVRVNALVAKAQKTPEEGWTMQDGTPWPGNNTRDHPGMIQVFLGET 408 (977)
T ss_pred HHHHhccCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccccccCCccCCCCCCCCCcchhhhhccCC
Confidence 000 0 0
Q ss_pred -------hcCCeEEEEeccCCCC----cchhhHHHHHhhc-ccCCccEEEEEcCCCCC-CHHHHHHHHHHhhcCC----C
Q 005700 279 -------EAGANIVYRHRILRDG----YKAGNLKSAMNCS-YVKDYEFVAIFDADFQP-NPDFLRRTVPHFKDNE----E 341 (682)
Q Consensus 279 -------~~~v~v~~~~r~~~~g----~KagaLn~gl~~~-~~a~~d~Vl~lDaD~~~-~pd~L~~lv~~~~~~p----~ 341 (682)
..-++++|+.|+++.| +||||||.+++.+ ...+++||+.+|+|+.+ +++++++++++|. || +
T Consensus 409 ~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGamNallrvSavmTNap~il~lDcDmy~n~s~~lr~AMCf~~-D~~~g~~ 487 (977)
T PLN02195 409 GARDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFLM-DPVVGRD 487 (977)
T ss_pred CCcccccccCceeEEEeccCCCCCCcccccchhHHHHHHhhhccCCCeEEEecCccccCcHHHHHHHHhhcc-CcccCCe
Confidence 0124588999998755 7999999999976 36789999999999965 5589999999998 46 7
Q ss_pred eeEEEeeeEeecCCCC-hHHHhhhhhhhhhhHHHHhhccccccccccccceEEEEeeeehhcC-----------------
Q 005700 342 LGLVQARWSFVNKDEN-LLTRLQDINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEDSG----------------- 403 (682)
Q Consensus 342 vg~Vqg~~~~~n~~~~-l~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~iG----------------- 403 (682)
++.||.+|.+.|.+.+ .+..-..+.+.. ..+...+..+.+ +.||++++||+++-..+
T Consensus 488 va~VQ~PQ~F~~i~~~D~y~~~~~~ffd~---~~~g~dglqGP~--YvGTGC~fRR~ALyG~~p~~~~~~~~~~~~~~~~ 562 (977)
T PLN02195 488 VCYVQFPQRFDGIDRSDRYANRNVVFFDV---NMKGLDGIQGPV--YVGTGCVFNRQALYGYGPPSLPRLPKSSSSSSSC 562 (977)
T ss_pred eEEEcCCcccCCCCCCCCCCcccceeeee---eeccccccCCcc--ccccCceeeehhhhccCccccccccccccccccc
Confidence 8899999999988653 222222222221 122223333333 78999999998765321
Q ss_pred --------------------------------------------------------------------------------
Q 005700 404 -------------------------------------------------------------------------------- 403 (682)
Q Consensus 404 -------------------------------------------------------------------------------- 403 (682)
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~fG~S~~fi~S~~~~~~~~~~~~~~~~ 642 (977)
T PLN02195 563 CCPTKKKPEQDPSEIYRDAKREDLNAAIFNLREIDNYDEYERSMLISQMSFEKTFGLSSVFIESTLMENGGVPESANPST 642 (977)
T ss_pred cccccccccccchhhccccccccccccccccccccccchhhhhhhhhhhHHHHhhcccHHHHHHHHHHhcCCCCCCCcHH
Confidence
Q ss_pred -----------------------CCCCCCchhHHHHHHHHHHcCCeEEEecCc--eeeeccCcCHHHHHHHhHhhhchhh
Q 005700 404 -----------------------GWMERTTVEDMDIAVRAHLRGWKFIFLNDV--ECQCELPESYEAYRKQQHRWHSGPM 458 (682)
Q Consensus 404 -----------------------G~~~~~~~ED~~l~~rl~~~G~ki~y~~~a--~~~~e~p~t~~~~~~Qr~RW~~G~~ 458 (682)
||..++++||+.++++++.+|||.+|++.. .+.+.+|+++.+++.||.||+.|.+
T Consensus 643 ~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rlH~rGWrSvY~~p~r~af~G~AP~~L~~~L~Qr~RWA~G~l 722 (977)
T PLN02195 643 LIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPVRPAFKGSAPINLSDRLHQVLRWALGSV 722 (977)
T ss_pred HHHHHHhhhcccCccccchhhhcCeeccceecHHHHHHHHHccCCcEEecCCccHHhcccCCCCHHHHHHHHHHHHhchh
Confidence 344456799999999999999999999754 3789999999999999999999999
Q ss_pred HHHHHhchhhhh----cCCCcchhHHHH
Q 005700 459 QLFRLCLPDIIR----AKISMGKKFNLI 482 (682)
Q Consensus 459 ~~~~~~~~~~l~----~~l~~~~k~~~l 482 (682)
|+++....+++. .++.+.+++..+
T Consensus 723 qI~~sr~nPl~~g~~~~~L~~~QRL~Yl 750 (977)
T PLN02195 723 EIFLSRHCPLWYGYGGGRLKWLQRLAYI 750 (977)
T ss_pred hhhhccCCccccccCCCCCCHHHHHHHH
Confidence 999855444432 346666665443
No 23
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=99.97 E-value=1.9e-29 Score=290.26 Aligned_cols=259 Identities=21% Similarity=0.313 Sum_probs=192.6
Q ss_pred CCCCeEEEEeecCCch----HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHH--------------------
Q 005700 218 GFFPMVLVQIPMCNEK----EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEE-------------------- 273 (682)
Q Consensus 218 ~~~P~VsVvIP~yNE~----~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~-------------------- 273 (682)
+++|.|+|+|++-+.. -...+|+.|+++.|||.+++.++|.|||...-|-+.+.+.
T Consensus 346 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~WvPFCkK~~IepRa 425 (1079)
T PLN02638 346 SQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRA 425 (1079)
T ss_pred ccCCCccEEEeCCCCccCccHHHHHHHHHHHhhcccccceeEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCC
Confidence 5699999999998765 5788999999999999999999999998877664433221
Q ss_pred -------------------------------------HH----H--------H-----h---------------------
Q 005700 274 -------------------------------------VL----K--------W-----Q--------------------- 278 (682)
Q Consensus 274 -------------------------------------~~----~--------~-----~--------------------- 278 (682)
++ + | .
T Consensus 426 Pe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~a~~~~~p~~~~~m~dgt~W~g~~~~dHp~IiqVll~~~ 505 (1079)
T PLN02638 426 PEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKVRINGLVAKAQKVPEEGWIMQDGTPWPGNNTRDHPGMIQVFLGHS 505 (1079)
T ss_pred HHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccccCCccCCCCCCCCCHHHHHHHhcCC
Confidence 00 0 0 0
Q ss_pred -------hcCCeEEEEeccCCCC----cchhhHHHHHhhc-ccCCccEEEEEcCCCCC-CHHHHHHHHHHhhcCCC----
Q 005700 279 -------EAGANIVYRHRILRDG----YKAGNLKSAMNCS-YVKDYEFVAIFDADFQP-NPDFLRRTVPHFKDNEE---- 341 (682)
Q Consensus 279 -------~~~v~v~~~~r~~~~g----~KagaLn~gl~~~-~~a~~d~Vl~lDaD~~~-~pd~L~~lv~~~~~~p~---- 341 (682)
..-++++|+.|+++.| +||||||..++.+ ...+++||+.+|+|+.+ +|+.+++++++|.+ |+
T Consensus 506 ~~~d~~g~~lP~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmYiNns~alr~AMCf~lD-p~~g~~ 584 (1079)
T PLN02638 506 GGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFLMD-PNLGKS 584 (1079)
T ss_pred CccccccccccceEEEecccCCCCCcccccchHHHHHHHhhhccCCCeEeecccCcccCchHHHHHhhhhhcC-cccCCe
Confidence 0113468999998755 8999999999976 46799999999999965 59999999999984 64
Q ss_pred eeEEEeeeEeecCCCC-hHHHhhhhhhhhhhHHHHhhccccccccccccceEEEEeeeehhc------------------
Q 005700 342 LGLVQARWSFVNKDEN-LLTRLQDINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEDS------------------ 402 (682)
Q Consensus 342 vg~Vqg~~~~~n~~~~-l~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~i------------------ 402 (682)
++.||.+|.|.|.+.+ .+..-..+.+ -...+..++..+.+ +.||++++||+++-..
T Consensus 585 vafVQFPQrF~~i~k~D~Ygn~~~vff---di~~~GlDGlqGP~--YvGTGC~fRR~ALYG~~p~~~~~~~~~~~~~~~~ 659 (1079)
T PLN02638 585 VCYVQFPQRFDGIDRNDRYANRNTVFF---DINLRGLDGIQGPV--YVGTGCVFNRTALYGYEPPIKPKHKKPGFLSSLC 659 (1079)
T ss_pred eEEecCCcccCCCCCCCcccccceeee---ccccccccccCCcc--ccccCcceeehhhcCcCCcccccccccccccccc
Confidence 8899999999988754 2221111111 12233334444343 7899999999886522
Q ss_pred --------------------------------------------------------------------------------
Q 005700 403 -------------------------------------------------------------------------------- 402 (682)
Q Consensus 403 -------------------------------------------------------------------------------- 402 (682)
T Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~S~~fi~S~~~~~~~~~ 739 (1079)
T PLN02638 660 GGSRKKSSKSSKKGSDKKKSGKHVDPTVPVFNLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVP 739 (1079)
T ss_pred cccccccccccchhhccccccccccccccccccccccccccccccchhhhhhhhhhhhhhhccccHHHHHHHHHhhcCCC
Confidence
Q ss_pred --------------------------C---CCCCCCchhHHHHHHHHHHcCCeEEEe-cCc-eeeeccCcCHHHHHHHhH
Q 005700 403 --------------------------G---GWMERTTVEDMDIAVRAHLRGWKFIFL-NDV-ECQCELPESYEAYRKQQH 451 (682)
Q Consensus 403 --------------------------G---G~~~~~~~ED~~l~~rl~~~G~ki~y~-~~a-~~~~e~p~t~~~~~~Qr~ 451 (682)
| ||..++++||+.++++++.+|||.+|+ |+. .+.+.+|+++.+++.||.
T Consensus 740 ~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rLH~rGWrSvY~~P~r~AF~GlAP~~l~d~L~Qr~ 819 (1079)
T PLN02638 740 QSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVL 819 (1079)
T ss_pred CCCCcHHHHHHHHhhccCCCccCCchhhhcCeeecceecHHHHHHHHHcCCCcEEecCCCchHhcCcCCCCHHHHHHHHH
Confidence 0 244445799999999999999999999 433 378999999999999999
Q ss_pred hhhchhhHHHHHhchhhhh---cCCCcchhHHHH
Q 005700 452 RWHSGPMQLFRLCLPDIIR---AKISMGKKFNLI 482 (682)
Q Consensus 452 RW~~G~~~~~~~~~~~~l~---~~l~~~~k~~~l 482 (682)
||+.|.+|+++....+++. .++.+.+++..+
T Consensus 820 RWA~G~lqI~fsr~nPl~~G~~~rL~l~QRL~Yl 853 (1079)
T PLN02638 820 RWALGSVEILFSRHCPIWYGYGGRLKWLERFAYV 853 (1079)
T ss_pred HHhhcchheeeccCCccccccCCCCCHHHHHHHH
Confidence 9999999998744434442 356666665543
No 24
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=99.97 E-value=1e-30 Score=259.31 Aligned_cols=191 Identities=22% Similarity=0.317 Sum_probs=165.3
Q ss_pred CeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCC--cchh
Q 005700 221 PMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDG--YKAG 298 (682)
Q Consensus 221 P~VsVvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g--~Kag 298 (682)
|.|||+||+|||++.+.++|+|+.+|+||+ ++|+||||+|+|.+.+.+++...+++. .++.+.....+.| +|++
T Consensus 1 p~vsviip~~n~~~~l~~~L~sl~~q~~~~--~eiivVdd~s~d~t~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~ 76 (196)
T cd02520 1 PGVSILKPLCGVDPNLYENLESFFQQDYPK--YEILFCVQDEDDPAIPVVRKLIAKYPN--VDARLLIGGEKVGINPKVN 76 (196)
T ss_pred CCeEEEEecCCCCccHHHHHHHHHhccCCC--eEEEEEeCCCcchHHHHHHHHHHHCCC--CcEEEEecCCcCCCCHhHH
Confidence 679999999999999999999999999996 779999999999999888876654432 3333333333323 5888
Q ss_pred hHHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHhhhhhhhhhhHHHHhhc
Q 005700 299 NLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVN 378 (682)
Q Consensus 299 aLn~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~~~~~~~~~~~~~~~ 378 (682)
|+|.|++ .+++||++++|+|+.++|++|++++..+. +|++++|++.
T Consensus 77 ~~n~g~~---~a~~d~i~~~D~D~~~~~~~l~~l~~~~~-~~~~~~v~~~------------------------------ 122 (196)
T cd02520 77 NLIKGYE---EARYDILVISDSDISVPPDYLRRMVAPLM-DPGVGLVTCL------------------------------ 122 (196)
T ss_pred HHHHHHH---hCCCCEEEEECCCceEChhHHHHHHHHhh-CCCCCeEEee------------------------------
Confidence 9999999 68899999999999999999999999986 6889999875
Q ss_pred cccccccccccceEEEEeeeehhcCCCCCC--CchhHHHHHHHHHHcCCeEEEecCceeeeccCcCHHHHHHHhHhhhch
Q 005700 379 GVFINFFGFNGTAGVWRIKALEDSGGWMER--TTVEDMDIAVRAHLRGWKFIFLNDVECQCELPESYEAYRKQQHRWHSG 456 (682)
Q Consensus 379 ~~~~~~~~~~G~~~~~Rr~al~~iGG~~~~--~~~ED~~l~~rl~~~G~ki~y~~~a~~~~e~p~t~~~~~~Qr~RW~~G 456 (682)
+..|+++++|+++++++|||+.. ...||++++.++.++|+++.++|++.++++.|.+++++++||.||.+.
T Consensus 123 -------~~~g~~~~~r~~~~~~~ggf~~~~~~~~eD~~l~~rl~~~G~~i~~~~~~~~~~~~~~~~~~~~~q~~rw~~~ 195 (196)
T cd02520 123 -------CAFGKSMALRREVLDAIGGFEAFADYLAEDYFLGKLIWRLGYRVVLSPYVVMQPLGSTSLASFWRRQLRWSRT 195 (196)
T ss_pred -------cccCceeeeEHHHHHhccChHHHhHHHHHHHHHHHHHHHcCCeEEEcchheeccCCcccHHHHHHHHHHHhcc
Confidence 26789999999999999999753 458999999999999999999999999999999999999999999864
No 25
>PLN02190 cellulose synthase-like protein
Probab=99.97 E-value=3.2e-29 Score=280.73 Aligned_cols=256 Identities=21% Similarity=0.367 Sum_probs=194.0
Q ss_pred CCCCeEEEEeecCC---ch-HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHH--------------------
Q 005700 218 GFFPMVLVQIPMCN---EK-EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEE-------------------- 273 (682)
Q Consensus 218 ~~~P~VsVvIP~yN---E~-~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~-------------------- 273 (682)
+++|.|+|.|+++| |+ ..+.+|+.|+++.|||.+++.++|.|||..+-|-+.+.|.
T Consensus 90 ~~Lp~VDvFV~TaDP~kEPpl~v~nTvLSilA~dYP~eklscYvSDDG~s~LT~~al~EAa~FA~~WvPFCrK~~IepRa 169 (756)
T PLN02190 90 HDLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNVRVRA 169 (756)
T ss_pred ccCCcceEEEecCCCCcCCHHHHHHHHHHHHhccCCccccceEEecCCCcHhHHHHHHHHHHHHhhhcccccccCCCcCC
Confidence 35899999999999 76 8899999999999999999999999998887775444322
Q ss_pred ---------------------------HHHH-----------------------h------------------------h
Q 005700 274 ---------------------------VLKW-----------------------Q------------------------E 279 (682)
Q Consensus 274 ---------------------------~~~~-----------------------~------------------------~ 279 (682)
-+++ . .
T Consensus 170 Pe~YF~~~~~~~~~~~f~~e~~~~K~eYee~k~ri~~a~~~~~~~~~~~~~~~~~~~~~~dH~~iiqVll~~~~~~~~~~ 249 (756)
T PLN02190 170 PFRYFLNPPVATEDSEFSKDWEMTKREYEKLSRKVEDATGDSHWLDAEDDFEAFSNTKPNDHSTIVKVVWENKGGVGDEK 249 (756)
T ss_pred HHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhccCCCCcccCCcccccCCCCCCCCccceEEEecCCCCccccc
Confidence 0000 0 0
Q ss_pred cCCeEEEEeccCCCC----cchhhHHHHHhhc-ccCCccEEEEEcCCC-CCCHHHHHHHHHHhhcC----CCeeEEEeee
Q 005700 280 AGANIVYRHRILRDG----YKAGNLKSAMNCS-YVKDYEFVAIFDADF-QPNPDFLRRTVPHFKDN----EELGLVQARW 349 (682)
Q Consensus 280 ~~v~v~~~~r~~~~g----~KagaLn~gl~~~-~~a~~d~Vl~lDaD~-~~~pd~L~~lv~~~~~~----p~vg~Vqg~~ 349 (682)
.-++++|+.|++|.| +||||||..++.+ ...+++||+.+|+|+ ..+|+.+++++++|.+. .+++.||.+|
T Consensus 250 ~lP~LVYvSREKrP~~~Hh~KAGAmNaLlRVSavmtNaP~iLnlDCDmY~Nns~~~r~AmCf~ld~~~~~~~~~fVQfPQ 329 (756)
T PLN02190 250 EVPHLVYISREKRPNYLHHYKAGAMNFLVRVSGLMTNAPYMLNVDCDMYANEADVVRQAMCIFLQKSKNSNHCAFVQFPQ 329 (756)
T ss_pred cCceEEEEeccCCCCCCcccccchhHHHHHHhhhhccCCeEEEecCccccCchhHHHHhhhhhcCCCCCCCeeEEEeCch
Confidence 124578999988754 8999999999986 468999999999999 56899999999999853 2689999999
Q ss_pred EeecCCCChHHHhhhhhhhhhhHHHHhhccccccccccccceEEEEeeeehhc---------------------------
Q 005700 350 SFVNKDENLLTRLQDINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEDS--------------------------- 402 (682)
Q Consensus 350 ~~~n~~~~l~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~i--------------------------- 402 (682)
.+.+...|-...... ......++..+.+ +.||+|++||+++-..
T Consensus 330 ~F~D~y~n~~~v~f~-------~~~~GldGlqGP~--YvGTGCffrR~alyG~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (756)
T PLN02190 330 EFYDSNTNELTVLQS-------YLGRGIAGIQGPI--YIGSGCFHTRRVMYGLSSDDLEDDGSLSSVATREFLAEDSLAR 400 (756)
T ss_pred hhccccCccceEEEE-------EeeccccccCCcc--cccCCcceEeeeecCCCcccccccccccccccccccchhhhhh
Confidence 987554332222111 1122333443333 7899999999886520
Q ss_pred --C------------------------------------------------CCCCCCchhHHHHHHHHHHcCCeEEEecC
Q 005700 403 --G------------------------------------------------GWMERTTVEDMDIAVRAHLRGWKFIFLND 432 (682)
Q Consensus 403 --G------------------------------------------------G~~~~~~~ED~~l~~rl~~~G~ki~y~~~ 432 (682)
| ||..++++||..++++++++||+.+|++.
T Consensus 401 ~fg~s~~f~~s~~~~~~~~~~~~~~~~~~~~eA~~V~sC~YE~~T~WG~evG~~ygSitED~~TGl~mh~rGWrSvY~~p 480 (756)
T PLN02190 401 EFGNSKEMVKSVVDALQRKPNPQNSLTNSIEAAQEVGHCHYEYQTSWGNTIGWLYDSVAEDLNTSIGIHSRGWTSSYISP 480 (756)
T ss_pred hcCCcHHHHHHHHHHhccCCCCccchHHHHHHHHhhcccCCCCCCchhhccCcccceeechHHHHHHHHccCCceEecCC
Confidence 0 56667889999999999999999999864
Q ss_pred c--eeeeccCcCHHHHHHHhHhhhchhhHHHHHhchhhhh---cCCCcchhHHHH
Q 005700 433 V--ECQCELPESYEAYRKQQHRWHSGPMQLFRLCLPDIIR---AKISMGKKFNLI 482 (682)
Q Consensus 433 a--~~~~e~p~t~~~~~~Qr~RW~~G~~~~~~~~~~~~l~---~~l~~~~k~~~l 482 (682)
. ...+.+|+++.+.+.||+||+.|.+|+++....+++. +++.+.+++..+
T Consensus 481 ~~~AFlG~aP~~l~~~L~Q~~RWa~G~lqI~fsr~nPl~~g~~~~L~l~QRLaYl 535 (756)
T PLN02190 481 DPPAFLGSMPPGGPEAMVQQRRWATGLIEVLFNKQSPLIGMFCRKIRFRQRLAYL 535 (756)
T ss_pred CchhhcCcCCCChHHHhhhhhhHhhhhHHHHHhcCCCceeccCCCCCHHHHHHHH
Confidence 4 3678899999999999999999999998875544433 456666665443
No 26
>PLN02436 cellulose synthase A
Probab=99.97 E-value=3.4e-29 Score=287.03 Aligned_cols=260 Identities=21% Similarity=0.325 Sum_probs=195.1
Q ss_pred CCCCeEEEEeecCCch----HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHH--------------------
Q 005700 218 GFFPMVLVQIPMCNEK----EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEE-------------------- 273 (682)
Q Consensus 218 ~~~P~VsVvIP~yNE~----~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~-------------------- 273 (682)
+++|.|+|+|++-+.. -+..+|+.|+++.|||.+++.++|.|||...-|-+.+.+.
T Consensus 362 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FAk~WvPFCkK~~IepRa 441 (1094)
T PLN02436 362 SELASVDVFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFSIEPRA 441 (1094)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCC
Confidence 5699999999998765 5788999999999999999999999998776664433221
Q ss_pred -----------------------------------------HHH--------Hh--------------------------
Q 005700 274 -----------------------------------------VLK--------WQ-------------------------- 278 (682)
Q Consensus 274 -----------------------------------------~~~--------~~-------------------------- 278 (682)
.+. |.
T Consensus 442 Pe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~RIe~l~~~~~~vp~~~~~m~dgt~W~g~~~~dHp~IIqVll~~~ 521 (1094)
T PLN02436 442 PEWYFSQKMDYLKNKVHPAFVRERRAMKREYEEFKVKINALVATAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGHS 521 (1094)
T ss_pred HHHHhhccCCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhhhhccCccCCCCCCCCCccceEEEecCC
Confidence 000 00
Q ss_pred -------hcCCeEEEEeccCCCC----cchhhHHHHHhhc-ccCCccEEEEEcCCC-CCCHHHHHHHHHHhhc---CCCe
Q 005700 279 -------EAGANIVYRHRILRDG----YKAGNLKSAMNCS-YVKDYEFVAIFDADF-QPNPDFLRRTVPHFKD---NEEL 342 (682)
Q Consensus 279 -------~~~v~v~~~~r~~~~g----~KagaLn~gl~~~-~~a~~d~Vl~lDaD~-~~~pd~L~~lv~~~~~---~p~v 342 (682)
..-++++|+.|++|.| +||||||..++.+ ...+++||+.+|+|+ ..+|+.+++++++|.+ ++++
T Consensus 522 ~~~d~~g~~LP~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaP~ILNLDCDmYiNns~a~r~AMCfllD~~~g~~~ 601 (1094)
T PLN02436 522 GVRDVEGNELPRLVYVSREKRPGFDHHKKAGAMNSLIRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKI 601 (1094)
T ss_pred CCcccccccCceEEEEecccCCCCCcchhhhhhhhhhhhheeecCCceEEecccccccCchHHHHHhhhhhcCCccCCee
Confidence 0114588999998754 8999999999986 358899999999999 7799999999999984 2389
Q ss_pred eEEEeeeEeecCCCC-hHHHhhhhhhhhhhHHHHhhccccccccccccceEEEEeeeehhc-------------------
Q 005700 343 GLVQARWSFVNKDEN-LLTRLQDINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEDS------------------- 402 (682)
Q Consensus 343 g~Vqg~~~~~n~~~~-l~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~i------------------- 402 (682)
++||.+|+|.|.+++ .+..-..+.+. .......+..+.+ +.||+|++||+++-..
T Consensus 602 afVQFPQrF~gi~k~D~Y~n~~~vffd---i~~~GlDGlqGP~--YvGTGC~frR~aLYG~~pp~~~~~~~~~~~~~~~~ 676 (1094)
T PLN02436 602 CYVQFPQRFDGIDRHDRYSNRNVVFFD---INMKGLDGIQGPI--YVGTGCVFRRQALYGYDAPKKKKPPGKTCNCWPKW 676 (1094)
T ss_pred EEEcCCcccCCCCCCCcccccceEeee---ccccccccCCCcc--ccccCceeeeeeeeccCCccccccccccccccccc
Confidence 999999999988764 22221111111 2223334444444 7899999999876511
Q ss_pred --------------------------------------------------------------------------------
Q 005700 403 -------------------------------------------------------------------------------- 402 (682)
Q Consensus 403 -------------------------------------------------------------------------------- 402 (682)
T Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~FG~S~~fi~S~~~~~~~~~~ 756 (1094)
T PLN02436 677 CCLCCGSRKKKKKKKSKEKKKKKNREASKQIHALENIEEGIEGSNNEKSSETPQLKLEKKFGQSPVFVASTLLENGGVPR 756 (1094)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHhhhcccHHHHHHHHHhhcCCCC
Confidence
Q ss_pred -------------------------C---CCCCCCchhHHHHHHHHHHcCCeEEEe-cCce-eeeccCcCHHHHHHHhHh
Q 005700 403 -------------------------G---GWMERTTVEDMDIAVRAHLRGWKFIFL-NDVE-CQCELPESYEAYRKQQHR 452 (682)
Q Consensus 403 -------------------------G---G~~~~~~~ED~~l~~rl~~~G~ki~y~-~~a~-~~~e~p~t~~~~~~Qr~R 452 (682)
| ||..++++||+.++++++.+|||.+|+ |+.. +.+.+|+++.+++.||.|
T Consensus 757 ~~~~~s~l~eA~~V~sC~YE~~T~WG~evGwiYGSvTEDv~TG~rLH~rGWrSvY~~P~r~AF~GlAP~~L~d~L~Qr~R 836 (1094)
T PLN02436 757 NASPASLLREAIQVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLR 836 (1094)
T ss_pred CCCcHHHHHHHHHhhcCCCcccChhhHhhCeeccceecHHHHHHHHHcCCCceEeCCCCchhhcCcCCCCHHHHHHHHHH
Confidence 0 445567799999999999999999998 4443 679999999999999999
Q ss_pred hhchhhHHHHHhchhhh---hcCCCcchhHHHH
Q 005700 453 WHSGPMQLFRLCLPDII---RAKISMGKKFNLI 482 (682)
Q Consensus 453 W~~G~~~~~~~~~~~~l---~~~l~~~~k~~~l 482 (682)
|+.|.+|+++....+++ ..++.+.+++..+
T Consensus 837 WA~G~lQIffsr~nPl~~g~~~~L~l~QRL~Yl 869 (1094)
T PLN02436 837 WALGSVEIFLSRHCPIWYGYGGGLKWLERFSYI 869 (1094)
T ss_pred HhhcceeeeeccCCcchhcccccCCHHHHHHHH
Confidence 99999999876444443 2356777666554
No 27
>PLN02400 cellulose synthase
Probab=99.97 E-value=2.2e-29 Score=289.83 Aligned_cols=260 Identities=20% Similarity=0.287 Sum_probs=196.4
Q ss_pred CCCCeEEEEeecCCch----HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHH--------------------
Q 005700 218 GFFPMVLVQIPMCNEK----EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEE-------------------- 273 (682)
Q Consensus 218 ~~~P~VsVvIP~yNE~----~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~-------------------- 273 (682)
+++|.|+|+|++-+.. -+..+|+.|+++.|||.+++.++|.|||...-|-+.+.+.
T Consensus 353 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~Al~Eaa~FA~~WvPFCkK~~IepRa 432 (1085)
T PLN02400 353 SQLAPVDVFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRA 432 (1085)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHHHHHHHHhhcchhhhcCCCcCC
Confidence 5699999999998765 5788999999999999999999999998876664433221
Q ss_pred -------------------------------------HHH------------Hh--------------------------
Q 005700 274 -------------------------------------VLK------------WQ-------------------------- 278 (682)
Q Consensus 274 -------------------------------------~~~------------~~-------------------------- 278 (682)
++. |.
T Consensus 433 Pe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~~~~~~~~~~~~~m~dgt~W~g~~~~dHp~iIqVll~~~ 512 (1085)
T PLN02400 433 PEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKIPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHS 512 (1085)
T ss_pred HHHHhccCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccccCccCCCCCCCCCchhhhhhhcCC
Confidence 000 00
Q ss_pred -------hcCCeEEEEeccCCCC----cchhhHHHHHhhc-ccCCccEEEEEcCCCC-CCHHHHHHHHHHhhc---CCCe
Q 005700 279 -------EAGANIVYRHRILRDG----YKAGNLKSAMNCS-YVKDYEFVAIFDADFQ-PNPDFLRRTVPHFKD---NEEL 342 (682)
Q Consensus 279 -------~~~v~v~~~~r~~~~g----~KagaLn~gl~~~-~~a~~d~Vl~lDaD~~-~~pd~L~~lv~~~~~---~p~v 342 (682)
..-++++|+.|++|.| +||||||..++.+ ...++.||+.+|+|+. .+|+.+++++++|.+ ++++
T Consensus 513 ~~~d~~g~~LP~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~ILNlDCDmY~Nns~a~r~AMCf~lD~~~g~~~ 592 (1085)
T PLN02400 513 GGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAIGKKT 592 (1085)
T ss_pred CCcccccccCceeEEEeccCCCCCCcchhhhhhHHHHHHhhhhcCCceEEecccccccCCchhHHhhhhheeccCCCcee
Confidence 0124688999998855 8999999999976 4689999999999995 599999999999985 3379
Q ss_pred eEEEeeeEeecCCCC-hHHHhhhhhhhhhhHHHHhhccccccccccccceEEEEeeeehhc-------------------
Q 005700 343 GLVQARWSFVNKDEN-LLTRLQDINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEDS------------------- 402 (682)
Q Consensus 343 g~Vqg~~~~~n~~~~-l~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~i------------------- 402 (682)
++||.+|+|.|.+++ .+..-..+.+. .......+..+.+ +.||+|++||+++-..
T Consensus 593 afVQFPQrF~gi~~~D~Y~n~~~vffd---i~~~GldGlqGP~--YvGTGC~frR~aLYG~~p~~~~~~~~~~~~~~~~~ 667 (1085)
T PLN02400 593 CYVQFPQRFDGIDLHDRYANRNIVFFD---INLKGLDGIQGPV--YVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKSCC 667 (1085)
T ss_pred EEEeCCcccCCCCCCCCcccceeEEee---ccccccccCCCcc--ccccCcceeeeeeccCCCccccccccccccccccc
Confidence 999999999987654 22211111111 2223334444444 7899999999887410
Q ss_pred --------------------------------------------------------------------------------
Q 005700 403 -------------------------------------------------------------------------------- 402 (682)
Q Consensus 403 -------------------------------------------------------------------------------- 402 (682)
T Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~fG~S~~fi~S~~~~~~~~~~~~ 747 (1085)
T PLN02400 668 GSRKKGKGSKKYNIDKKRAMKRTESNVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPST 747 (1085)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhhccccHHHHHHHHHHhcCCCCCC
Confidence
Q ss_pred -----------------------C---CCCCCCchhHHHHHHHHHHcCCeEEEec--CceeeeccCcCHHHHHHHhHhhh
Q 005700 403 -----------------------G---GWMERTTVEDMDIAVRAHLRGWKFIFLN--DVECQCELPESYEAYRKQQHRWH 454 (682)
Q Consensus 403 -----------------------G---G~~~~~~~ED~~l~~rl~~~G~ki~y~~--~a~~~~e~p~t~~~~~~Qr~RW~ 454 (682)
| ||..++++||+.++++++.+|||.+|+. .+.+.+.+|+++.+++.||.||+
T Consensus 748 ~~~~ll~eA~~V~sC~YE~~T~WG~evGwiYGSvTED~~TG~~LH~rGWrSvY~~p~r~af~GlAP~~l~d~L~Qr~RWA 827 (1085)
T PLN02400 748 NPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWA 827 (1085)
T ss_pred CcHHHHHHHHHhhccCCccCCchhhhhCeeccceechHHHHHHHHccCCceEecCCCcHhhcCcCCCCHHHHHHHHHHHh
Confidence 0 4555678999999999999999999995 44578999999999999999999
Q ss_pred chhhHHHHHhchhhhh---cCCCcchhHHHH
Q 005700 455 SGPMQLFRLCLPDIIR---AKISMGKKFNLI 482 (682)
Q Consensus 455 ~G~~~~~~~~~~~~l~---~~l~~~~k~~~l 482 (682)
.|.+|+++....+++. +++.+.+++..+
T Consensus 828 ~G~lqI~~sr~nPl~~G~~~~L~l~QRL~Yl 858 (1085)
T PLN02400 828 LGSIEILLSRHCPIWYGYNGRLKLLERLAYI 858 (1085)
T ss_pred hcchheeeccCCccccccCCCCCHHHHHHHH
Confidence 9999998865444552 456666666554
No 28
>PLN02248 cellulose synthase-like protein
Probab=99.97 E-value=7.3e-29 Score=285.04 Aligned_cols=196 Identities=20% Similarity=0.325 Sum_probs=147.6
Q ss_pred CeEEEEeccCCCC----cchhhHHHHHhhc-ccCCccEEEEEcCCCC-CCHHHHHHHHHHhhc--CCCeeEEEeeeEeec
Q 005700 282 ANIVYRHRILRDG----YKAGNLKSAMNCS-YVKDYEFVAIFDADFQ-PNPDFLRRTVPHFKD--NEELGLVQARWSFVN 353 (682)
Q Consensus 282 v~v~~~~r~~~~g----~KagaLn~gl~~~-~~a~~d~Vl~lDaD~~-~~pd~L~~lv~~~~~--~p~vg~Vqg~~~~~n 353 (682)
+.++|+.|+++.| +||||||..++.+ ...+++||+.+|||+. .+++.+++++++|.+ +++++.||.+|.|.|
T Consensus 585 P~LVYVSREKRPg~~Hh~KAGAMNALlRVSavmTNgPfILNLDCDmYiNns~alr~AMCf~lD~~g~~vAfVQFPQrF~~ 664 (1135)
T PLN02248 585 PMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSLAIREGMCFMMDRGGDRICYVQFPQRFEG 664 (1135)
T ss_pred ceeEEEecccCCCCCcccccchhhhHHHhhhhccCCCeEEEeccCcccCCchhHHhcchheecCCCCceEEEcCCcccCC
Confidence 3467888887754 7999999999875 4689999999999996 577899999999985 479999999999998
Q ss_pred CCCC-hHHHhhhhhhhhhhHHHHhhccccccccccccceEEEEeeeehhcC-----------------------------
Q 005700 354 KDEN-LLTRLQDINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEDSG----------------------------- 403 (682)
Q Consensus 354 ~~~~-l~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~iG----------------------------- 403 (682)
.+.+ .+..-..+.+. ...+..++..+.+ +.|++|++||+++-..+
T Consensus 665 I~k~D~Ygn~~~Vffd---i~~~GlDGlqGP~--YvGTGCffRR~ALYG~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (1135)
T PLN02248 665 IDPSDRYANHNTVFFD---VNMRALDGLQGPV--YVGTGCLFRRIALYGFDPPRAKEHSGCFGSCKFTKKKKKETSASEP 739 (1135)
T ss_pred CCCCCccCCcceeeee---eeeccccccCCcc--ccccCceeeehhhcCcCCcccccccccccccccccccccccccccc
Confidence 8654 22211111111 2223334444333 78999999998865310
Q ss_pred --------------------------------------------------------------------------------
Q 005700 404 -------------------------------------------------------------------------------- 403 (682)
Q Consensus 404 -------------------------------------------------------------------------------- 403 (682)
T Consensus 740 ~~~~~~~~~~~~~~~~~~~rfG~S~~fi~S~~~a~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~eA~~V~sC~YE 819 (1135)
T PLN02248 740 EEQPDLEDDDDLELSLLPKRFGNSTMFAASIPVAEFQGRPLADHPSVKNGRPPGALTVPREPLDAATVAEAISVISCWYE 819 (1135)
T ss_pred cccccccccchhhhhhhhhhhccchhhhhhhHHHhhcccccccccccccccccccccccccCCcHHHHHHHHhhcccccc
Confidence
Q ss_pred ---------CCCCCCchhHHHHHHHHHHcCCeEEEec--CceeeeccCcCHHHHHHHhHhhhchhhHHHHHhchhhhh-c
Q 005700 404 ---------GWMERTTVEDMDIAVRAHLRGWKFIFLN--DVECQCELPESYEAYRKQQHRWHSGPMQLFRLCLPDIIR-A 471 (682)
Q Consensus 404 ---------G~~~~~~~ED~~l~~rl~~~G~ki~y~~--~a~~~~e~p~t~~~~~~Qr~RW~~G~~~~~~~~~~~~l~-~ 471 (682)
||..++++||+.++++++.+|||.+|++ ...+.+.+|+++.+++.||.||+.|.+|+++.....++. .
T Consensus 820 ~~T~WG~evG~~YGSvTEDv~TGlrLH~rGWrSvY~~p~r~AF~GlAP~~L~d~L~Qr~RWA~G~lQIf~sr~~Pll~~~ 899 (1135)
T PLN02248 820 DKTEWGDRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASR 899 (1135)
T ss_pred cCCchhhhcCeeecceechHHHHHHHHhcCCceEeCCCChHhhcCCCCCCHHHHHHHHHHHhhchHHHHhccCCccccCC
Confidence 3444567999999999999999999984 344779999999999999999999999999876555443 4
Q ss_pred CCCcchhHHHH
Q 005700 472 KISMGKKFNLI 482 (682)
Q Consensus 472 ~l~~~~k~~~l 482 (682)
++.+.+++..+
T Consensus 900 ~Lsl~QRL~Yl 910 (1135)
T PLN02248 900 RLKFLQRIAYL 910 (1135)
T ss_pred CCCHHHHHHHH
Confidence 57777766554
No 29
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=99.96 E-value=6.3e-28 Score=277.04 Aligned_cols=260 Identities=22% Similarity=0.317 Sum_probs=193.9
Q ss_pred CCCCeEEEEeecCCch----HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHH--------------------
Q 005700 218 GFFPMVLVQIPMCNEK----EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEE-------------------- 273 (682)
Q Consensus 218 ~~~P~VsVvIP~yNE~----~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~-------------------- 273 (682)
+.+|.|+|+|++-+.. -+..+|+.|+++.|||.+++.++|.|||...-|-+.+.+.
T Consensus 284 ~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FAk~WvPFCkK~~IepRa 363 (1044)
T PLN02915 284 NRLAPVDVFVSTVDPLKEPPIITANTVLSILAVDYPVDKVSCYVSDDGASMLLFDTLSETAEFARRWVPFCKKHNIEPRA 363 (1044)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHhHHHHHHHHHHHHHhhcchhhhcCCCcCC
Confidence 4599999999998765 5788999999999999999999999998776664433221
Q ss_pred -----------------------------------------HHH--------H--------h------------------
Q 005700 274 -----------------------------------------VLK--------W--------Q------------------ 278 (682)
Q Consensus 274 -----------------------------------------~~~--------~--------~------------------ 278 (682)
.++ | +
T Consensus 364 Pe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~RIe~l~~~~~~~~~~~~~m~dgt~W~g~~~~dHp~IIqVll~~~ 443 (1044)
T PLN02915 364 PEFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSE 443 (1044)
T ss_pred HHHHhccCCCccccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccccCCccCCCCCCCCCccceEEeecCC
Confidence 000 0 0
Q ss_pred -------hcCCeEEEEeccCCCC----cchhhHHHHHhhc-ccCCccEEEEEcCCC-CCCHHHHHHHHHHhhc---CCCe
Q 005700 279 -------EAGANIVYRHRILRDG----YKAGNLKSAMNCS-YVKDYEFVAIFDADF-QPNPDFLRRTVPHFKD---NEEL 342 (682)
Q Consensus 279 -------~~~v~v~~~~r~~~~g----~KagaLn~gl~~~-~~a~~d~Vl~lDaD~-~~~pd~L~~lv~~~~~---~p~v 342 (682)
..-++++|+.|++|.| +||||||..++.+ ...++.||+.+|+|+ ..+|+.+++++++|.+ ++++
T Consensus 444 ~~~d~~g~~lP~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~iLNlDCDmY~Nns~a~r~AMCf~lD~~~g~~~ 523 (1044)
T PLN02915 444 GALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDPQLGKKL 523 (1044)
T ss_pred CCcccccCccceeEEEecccCCCCCcchhhhhhhhHhhhhheeecCcEEEeeccccccCcchhhHhhceeeecCCCCCee
Confidence 0114588999998855 8999999999976 457899999999999 5689999999999985 3389
Q ss_pred eEEEeeeEeecCCCCh-HHHhhhhhhhhhhHHHHhhccccccccccccceEEEEeeeehhc-------------------
Q 005700 343 GLVQARWSFVNKDENL-LTRLQDINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEDS------------------- 402 (682)
Q Consensus 343 g~Vqg~~~~~n~~~~l-~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~i------------------- 402 (682)
+.||.+|+|.|.+++- +..-..+.+. .......+..+.+ +.||+|++||+++-..
T Consensus 524 afVQFPQrF~gidk~D~Y~n~~~Vffd---i~~~GldGlqGP~--YvGTGCffrR~aLYG~~pp~~~~~~~~~~~~~~~~ 598 (1044)
T PLN02915 524 CYVQFPQRFDGIDRHDRYANRNVVFFD---INMKGLDGIQGPV--YVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSW 598 (1044)
T ss_pred EEEeCCcccCCCCCCCCcCccceEEEe---eecccccccCCcc--cccCCceeeeeeecCcCCccccccccccccccccc
Confidence 9999999999876542 2211111111 1222333433333 6788888888765410
Q ss_pred --------------------------------------------------------------------------------
Q 005700 403 -------------------------------------------------------------------------------- 402 (682)
Q Consensus 403 -------------------------------------------------------------------------------- 402 (682)
T Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (1044)
T PLN02915 599 CCCCCGGGRRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKKSQAVFDLEEIEEGLEGYDELEKSSLMSQ 678 (1044)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhh
Confidence
Q ss_pred ---------------------------------------------------C---CCCCCCchhHHHHHHHHHHcCCeEE
Q 005700 403 ---------------------------------------------------G---GWMERTTVEDMDIAVRAHLRGWKFI 428 (682)
Q Consensus 403 ---------------------------------------------------G---G~~~~~~~ED~~l~~rl~~~G~ki~ 428 (682)
| ||..++++||+.++++++.+|||.+
T Consensus 679 ~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rLH~rGWrSv 758 (1044)
T PLN02915 679 KNFEKRFGQSPVFIASTLMEDGGLPEGTNPAALIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSV 758 (1044)
T ss_pred hhhhhhcCCcHHHHHHHHHhhcCCCCCCCcHHHHHHHHhccccCCCccCchhHhhCccccccccHHHHHHHHHccCCcEE
Confidence 0 4555678999999999999999999
Q ss_pred EecC--ceeeeccCcCHHHHHHHhHhhhchhhHHHHHhchhhh---hcCCCcchhHHHH
Q 005700 429 FLND--VECQCELPESYEAYRKQQHRWHSGPMQLFRLCLPDII---RAKISMGKKFNLI 482 (682)
Q Consensus 429 y~~~--a~~~~e~p~t~~~~~~Qr~RW~~G~~~~~~~~~~~~l---~~~l~~~~k~~~l 482 (682)
|+.. +.+.+.+|+++.+++.||.||+.|.+|++++...+++ .+++.+.+++..+
T Consensus 759 Y~~p~r~AF~GlAP~~L~d~L~Qr~RWA~G~lqIf~sr~~Pl~~g~~~~L~l~QRL~Yl 817 (1044)
T PLN02915 759 YCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFMSRHCPLWYAYGGKLKWLERLAYI 817 (1044)
T ss_pred eeCCCcHHhcCcCCCCHHHHHHHHHHHhhhHHHHHHhccCCcccccCCCCCHHHHHHHH
Confidence 9953 3467999999999999999999999999986654444 2456666666554
No 30
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.96 E-value=1.7e-28 Score=249.36 Aligned_cols=223 Identities=19% Similarity=0.247 Sum_probs=175.7
Q ss_pred eEEEEeecCCch-HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhH
Q 005700 222 MVLVQIPMCNEK-EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNL 300 (682)
Q Consensus 222 ~VsVvIP~yNE~-~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaL 300 (682)
.|||+||+|||+ +.+.+||+|+.+|+ | .+|+|+||+++|.+.+.+++. .....+.+. ..++. +|++|+
T Consensus 1 ~isVvIp~~ne~~~~l~~~l~sl~~q~-~---~eiivvdd~s~d~~~~~l~~~-----~~~~~~~v~-~~~~~-g~~~a~ 69 (235)
T cd06434 1 DVTVIIPVYDEDPDVFRECLRSILRQK-P---LEIIVVTDGDDEPYLSILSQT-----VKYGGIFVI-TVPHP-GKRRAL 69 (235)
T ss_pred CeEEEEeecCCChHHHHHHHHHHHhCC-C---CEEEEEeCCCChHHHHHHHhh-----ccCCcEEEE-ecCCC-ChHHHH
Confidence 489999999999 99999999999998 3 468899999999888776422 122333333 33444 499999
Q ss_pred HHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHhhhhhhhhhhHHHHhhccc
Q 005700 301 KSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGV 380 (682)
Q Consensus 301 n~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~~~~~~~~~~~~~~~~~ 380 (682)
|.|++ .+++|+|+++|+|+.++|++|++++..+. +|++++|++.....+.+.+.+.......+.............
T Consensus 70 n~g~~---~a~~d~v~~lD~D~~~~~~~l~~l~~~~~-~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (235)
T cd06434 70 AEGIR---HVTTDIVVLLDSDTVWPPNALPEMLKPFE-DPKVGGVGTNQRILRPRDSKWSFLAAEYLERRNEEIRAAMSY 145 (235)
T ss_pred HHHHH---HhCCCEEEEECCCceeChhHHHHHHHhcc-CCCEeEEcCceEeecCcccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999 57999999999999999999999999998 799999999887777655555544433332222222223333
Q ss_pred cccccccccceEEEEeeeehhcCCCC----------CCCchhHHHHHHHHHHcCCeEEEecCceeeeccCcCHHHHHHHh
Q 005700 381 FINFFGFNGTAGVWRIKALEDSGGWM----------ERTTVEDMDIAVRAHLRGWKFIFLNDVECQCELPESYEAYRKQQ 450 (682)
Q Consensus 381 ~~~~~~~~G~~~~~Rr~al~~iGG~~----------~~~~~ED~~l~~rl~~~G~ki~y~~~a~~~~e~p~t~~~~~~Qr 450 (682)
.+...+++|+++++||+++++.++.. ....+||.+++.++.++||++.|.+++.++++.|.+++++++||
T Consensus 146 ~~~~~~~~G~~~~~rr~~l~~~~~~~~~~~~~~~~~~~~~~eD~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~q~ 225 (235)
T cd06434 146 DGGVPCLSGRTAAYRTEILKDFLFLEEFTNETFMGRRLNAGDDRFLTRYVLSHGYKTVYQYTSEAYTETPENYKKFLKQQ 225 (235)
T ss_pred CCCEEEccCcHHHHHHHHHhhhhhHHHhhhhhhcCCCCCcCchHHHHHHHHHCCCeEEEecCCeEEEEcchhHHHHHHHh
Confidence 44556688999999999999875322 22578999999999999999999999999999999999999999
Q ss_pred HhhhchhhH
Q 005700 451 HRWHSGPMQ 459 (682)
Q Consensus 451 ~RW~~G~~~ 459 (682)
.||.+|.++
T Consensus 226 ~Rw~~~~~~ 234 (235)
T cd06434 226 LRWSRSNWR 234 (235)
T ss_pred hhhhhcccC
Confidence 999998653
No 31
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.96 E-value=1.2e-27 Score=241.30 Aligned_cols=223 Identities=20% Similarity=0.290 Sum_probs=173.0
Q ss_pred EEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccC-CCCcchhhHHHH
Q 005700 225 VQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRIL-RDGYKAGNLKSA 303 (682)
Q Consensus 225 VvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~-~~g~KagaLn~g 303 (682)
|+||+|||.+.+++||+|+++|+||++.++|+|+||+|+|.+.+.++ .... ..+.++.++..+. ...+|+.++|.|
T Consensus 1 viip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~-~~~~--~~~~~v~~~~~~~~~~~g~~~a~n~g 77 (229)
T cd04192 1 VVIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILE-FAAA--KPNFQLKILNNSRVSISGKKNALTTA 77 (229)
T ss_pred CEEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHH-HHHh--CCCcceEEeeccCcccchhHHHHHHH
Confidence 68999999999999999999999998778899999999999988876 2222 3345555554442 234599999999
Q ss_pred HhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHhhhhhhhhhhHHHHhhcccccc
Q 005700 304 MNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGVFIN 383 (682)
Q Consensus 304 l~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~~~~~~~~~~~~~~~~~~~~ 383 (682)
++ .+++|||+++|+|+.++|++|++++..+.+ ++.+++++..... ...++.......++............. ..
T Consensus 78 ~~---~~~~d~i~~~D~D~~~~~~~l~~l~~~~~~-~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 151 (229)
T cd04192 78 IK---AAKGDWIVTTDADCVVPSNWLLTFVAFIQK-EQIGLVAGPVIYF-KGKSLLAKFQRLDWLSLLGLIAGSFGL-GK 151 (229)
T ss_pred HH---HhcCCEEEEECCCcccCHHHHHHHHHHhhc-CCCcEEeeeeeec-CCccHHHHHHHHHHHHHHHHHhhHHHh-cC
Confidence 98 578999999999999999999999998875 5667777776554 445566665554443222221111111 12
Q ss_pred ccccccceEEEEeeeehhcCCCCCC--CchhHHHHHHHHHHcCC-eEEEe--cCceeeeccCcCHHHHHHHhHhhhch
Q 005700 384 FFGFNGTAGVWRIKALEDSGGWMER--TTVEDMDIAVRAHLRGW-KFIFL--NDVECQCELPESYEAYRKQQHRWHSG 456 (682)
Q Consensus 384 ~~~~~G~~~~~Rr~al~~iGG~~~~--~~~ED~~l~~rl~~~G~-ki~y~--~~a~~~~e~p~t~~~~~~Qr~RW~~G 456 (682)
....+|+++++||++++++|||++. ...||.+++.++.++|+ ++.++ |++.++++.|.+++++++||.||+.|
T Consensus 152 ~~~~~g~~~~~rr~~~~~~ggf~~~~~~~~eD~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~Rw~~g 229 (229)
T cd04192 152 PFMCNGANMAYRKEAFFEVGGFEGNDHIASGDDELLLAKVASKYPKVAYLKNPEALVTTQPVTSWKELLNQRKRWASK 229 (229)
T ss_pred ccccccceEEEEHHHHHHhcCCccccccccCCHHHHHHHHHhCCCCEEEeeCcchheecCCchhHHHHHHHHHHhhcC
Confidence 2235799999999999999999864 45799999999999999 88887 55668899999999999999999986
No 32
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=99.95 E-value=2.2e-27 Score=243.85 Aligned_cols=225 Identities=21% Similarity=0.311 Sum_probs=179.1
Q ss_pred CCCCeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcch
Q 005700 218 GFFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKA 297 (682)
Q Consensus 218 ~~~P~VsVvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~Ka 297 (682)
+..|+++|+||+|||++.+.++|+|+.+|+||+++++|+|+||+++|.+.+++++..+ . ++.++..+++.| |+
T Consensus 26 ~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~----~--~v~~i~~~~~~g-~~ 98 (251)
T cd06439 26 AYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYAD----K--GVKLLRFPERRG-KA 98 (251)
T ss_pred CCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhh----C--cEEEEEcCCCCC-hH
Confidence 5688999999999999999999999999999987789999999999999988875432 2 344444555555 99
Q ss_pred hhHHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHhhhhhhhhhhHHHHhh
Q 005700 298 GNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQV 377 (682)
Q Consensus 298 gaLn~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~~~~~~~~~~~~~~ 377 (682)
+|+|.|++ .+++|+|+++|+|+.++|+++++++..+. +++++++++.....+.+. ..........+. ......
T Consensus 99 ~a~n~gi~---~a~~d~i~~lD~D~~~~~~~l~~l~~~~~-~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~ 171 (251)
T cd06439 99 AALNRALA---LATGEIVVFTDANALLDPDALRLLVRHFA-DPSVGAVSGELVIVDGGG--SGSGEGLYWKYE-NWLKRA 171 (251)
T ss_pred HHHHHHHH---HcCCCEEEEEccccCcCHHHHHHHHHHhc-CCCccEEEeEEEecCCcc--cchhHHHHHHHH-HHHHHH
Confidence 99999999 57889999999999999999999999997 588999999887665532 111101100100 111111
Q ss_pred ccccccccccccceEEEEeeeehhcCCCCCCCchhHHHHHHHHHHcCCeEEEecCceeeeccCcCHHHHHHHhHhhhchh
Q 005700 378 NGVFINFFGFNGTAGVWRIKALEDSGGWMERTTVEDMDIAVRAHLRGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGP 457 (682)
Q Consensus 378 ~~~~~~~~~~~G~~~~~Rr~al~~iGG~~~~~~~ED~~l~~rl~~~G~ki~y~~~a~~~~e~p~t~~~~~~Qr~RW~~G~ 457 (682)
........+.+|+++++||++++ ++......||.+++.++.++|+++.+.|++.+++..|.+.+++++|+.||..|.
T Consensus 172 ~~~~~~~~~~~g~~~~~rr~~~~---~~~~~~~~eD~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~g~ 248 (251)
T cd06439 172 ESRLGSTVGANGAIYAIRRELFR---PLPADTINDDFVLPLRIARQGYRVVYEPDAVAYEEVAEDGSEEFRRRVRIAAGN 248 (251)
T ss_pred HHhcCCeeeecchHHHhHHHHhc---CCCcccchhHHHHHHHHHHcCCeEEeccccEEEEeCcccHHHHHHHHHHHHhcc
Confidence 12222344578888899999998 677777889999999999999999999999999999999999999999999998
Q ss_pred hH
Q 005700 458 MQ 459 (682)
Q Consensus 458 ~~ 459 (682)
+|
T Consensus 249 ~~ 250 (251)
T cd06439 249 LQ 250 (251)
T ss_pred cc
Confidence 76
No 33
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=99.95 E-value=9.3e-26 Score=246.86 Aligned_cols=231 Identities=18% Similarity=0.203 Sum_probs=168.5
Q ss_pred CCCCeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEecc---CCCC
Q 005700 218 GFFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRI---LRDG 294 (682)
Q Consensus 218 ~~~P~VsVvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~---~~~g 294 (682)
+..|+|||+||+|||++.+.+||+|+.+|+||+ +++|+|+||+|+|.|.+++++..++++.. .++.+++.+ .+.+
T Consensus 37 ~~~p~VSVIIpa~Ne~~~L~~~L~sL~~q~yp~-~~eIIVVDd~StD~T~~i~~~~~~~~~~~-~~i~vi~~~~~~~g~~ 114 (384)
T TIGR03469 37 EAWPAVVAVVPARNEADVIGECVTSLLEQDYPG-KLHVILVDDHSTDGTADIARAAARAYGRG-DRLTVVSGQPLPPGWS 114 (384)
T ss_pred CCCCCEEEEEecCCcHhHHHHHHHHHHhCCCCC-ceEEEEEeCCCCCcHHHHHHHHHHhcCCC-CcEEEecCCCCCCCCc
Confidence 568999999999999999999999999999996 47899999999999999988765543211 244444332 2234
Q ss_pred cchhhHHHHHhhcccCC-----ccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHhhhhhhhh
Q 005700 295 YKAGNLKSAMNCSYVKD-----YEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSF 369 (682)
Q Consensus 295 ~KagaLn~gl~~~~~a~-----~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~~~~~~ 369 (682)
+|..|+|.|++. ++ +|+++++|+|+.++||++++++..+++ ++.++|++...... ++...+........
T Consensus 115 Gk~~A~n~g~~~---A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~-~~~~~vs~~~~~~~--~~~~~~~~~~~~~~ 188 (384)
T TIGR03469 115 GKLWAVSQGIAA---ARTLAPPADYLLLTDADIAHGPDNLARLVARARA-EGLDLVSLMVRLRC--ESFWEKLLIPAFVF 188 (384)
T ss_pred chHHHHHHHHHH---HhccCCCCCEEEEECCCCCCChhHHHHHHHHHHh-CCCCEEEecccccC--CCHHHHHHHHHHHH
Confidence 699999999994 45 999999999999999999999999985 56677776554332 23332221111100
Q ss_pred hhHH---HHhhccccccccccccceEEEEeeeehhcCCCCC--CCchhHHHHHHHHHHcCCeEEEecCcee-eeccCcCH
Q 005700 370 HFEV---EQQVNGVFINFFGFNGTAGVWRIKALEDSGGWME--RTTVEDMDIAVRAHLRGWKFIFLNDVEC-QCELPESY 443 (682)
Q Consensus 370 ~~~~---~~~~~~~~~~~~~~~G~~~~~Rr~al~~iGG~~~--~~~~ED~~l~~rl~~~G~ki~y~~~a~~-~~e~p~t~ 443 (682)
.+.. ..........+....|+++++||++++++|||++ ....||.+++.++.++|+++.+...... .....+++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~G~~~lirr~~~~~vGGf~~~~~~~~ED~~L~~r~~~~G~~v~~~~~~~~~s~r~~~~~ 268 (384)
T TIGR03469 189 FFQKLYPFRWVNDPRRRTAAAAGGCILIRREALERIGGIAAIRGALIDDCTLAAAVKRSGGRIWLGLAARTRSLRPYDGL 268 (384)
T ss_pred HHHHhcchhhhcCCCccceeecceEEEEEHHHHHHcCCHHHHhhCcccHHHHHHHHHHcCCcEEEEecCceEEEEecCCH
Confidence 0000 0011111122333679999999999999999976 4578999999999999999999866554 34556688
Q ss_pred HHHHHHhHhhhch
Q 005700 444 EAYRKQQHRWHSG 456 (682)
Q Consensus 444 ~~~~~Qr~RW~~G 456 (682)
++.++|+.||...
T Consensus 269 ~~~~~~~~r~~~~ 281 (384)
T TIGR03469 269 GEIWRMIARTAYT 281 (384)
T ss_pred HHHHHHHHHhHHH
Confidence 9999999998543
No 34
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=99.93 E-value=5.6e-25 Score=224.75 Aligned_cols=232 Identities=16% Similarity=0.204 Sum_probs=177.3
Q ss_pred eEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHH
Q 005700 222 MVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLK 301 (682)
Q Consensus 222 ~VsVvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn 301 (682)
+++|+||+||+++.+.++++|+.+|+||...++|+|+||+++|++.+.+++..+ ....+.++..+ +. ++++++|
T Consensus 1 ~~sIiip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~----~~~~v~~i~~~-~~-~~~~a~N 74 (249)
T cd02525 1 FVSIIIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAA----KDPRIRLIDNP-KR-IQSAGLN 74 (249)
T ss_pred CEEEEEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHh----cCCeEEEEeCC-CC-CchHHHH
Confidence 489999999999999999999999999866788999999999999888876543 34445555433 33 4889999
Q ss_pred HHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHhhhhhhhhhhHHH--Hhhcc
Q 005700 302 SAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVE--QQVNG 379 (682)
Q Consensus 302 ~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~~~~~~~~~~~--~~~~~ 379 (682)
.|++ .+++||++++|+|+.++|++|++++..+.+ ++.+++++.....+.+ .............+... .....
T Consensus 75 ~g~~---~a~~d~v~~lD~D~~~~~~~l~~~~~~~~~-~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 148 (249)
T cd02525 75 IGIR---NSRGDIIIRVDAHAVYPKDYILELVEALKR-TGADNVGGPMETIGES--KFQKAIAVAQSSPLGSGGSAYRGG 148 (249)
T ss_pred HHHH---HhCCCEEEEECCCccCCHHHHHHHHHHHhc-CCCCEEecceecCCCC--hHHHHHHHHhhchhccCCcccccc
Confidence 9999 579999999999999999999999998874 6777887765433322 11111111000000000 00000
Q ss_pred ccccccccccceEEEEeeeehhcCCCCCC-CchhHHHHHHHHHHcCCeEEEecCceeeeccCcCHHHHHHHhHhhhchhh
Q 005700 380 VFINFFGFNGTAGVWRIKALEDSGGWMER-TTVEDMDIAVRAHLRGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGPM 458 (682)
Q Consensus 380 ~~~~~~~~~G~~~~~Rr~al~~iGG~~~~-~~~ED~~l~~rl~~~G~ki~y~~~a~~~~e~p~t~~~~~~Qr~RW~~G~~ 458 (682)
.........|+++++|+++++++|++++. ..+||.+++.++.++|+++.++|++.+.+..+.+++.+.+|+.||..|..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~eD~~l~~r~~~~G~~~~~~~~~~~~~~~~~s~~~~~~~~~r~~~~~~ 228 (249)
T cd02525 149 AVKIGYVDTVHHGAYRREVFEKVGGFDESLVRNEDAELNYRLRKAGYKIWLSPDIRVYYYPRSTLKKLARQYFRYGKWRA 228 (249)
T ss_pred ccccccccccccceEEHHHHHHhCCCCcccCccchhHHHHHHHHcCcEEEEcCCeEEEEcCCCCHHHHHHHHHHHhhhhH
Confidence 00012235788899999999999999875 34799999999999999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q 005700 459 QLFRLCL 465 (682)
Q Consensus 459 ~~~~~~~ 465 (682)
+..+++.
T Consensus 229 ~~~~~~~ 235 (249)
T cd02525 229 RTLRKHR 235 (249)
T ss_pred HHHHhCc
Confidence 9987754
No 35
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=99.92 E-value=4.8e-25 Score=246.72 Aligned_cols=219 Identities=24% Similarity=0.410 Sum_probs=158.0
Q ss_pred CeEEEEeccCCCC----cchhhHHHHHhhc-ccCCccEEEEEcCCC-CCCHHHHHHHHHHhhc---CCCeeEEEeeeEee
Q 005700 282 ANIVYRHRILRDG----YKAGNLKSAMNCS-YVKDYEFVAIFDADF-QPNPDFLRRTVPHFKD---NEELGLVQARWSFV 352 (682)
Q Consensus 282 v~v~~~~r~~~~g----~KagaLn~gl~~~-~~a~~d~Vl~lDaD~-~~~pd~L~~lv~~~~~---~p~vg~Vqg~~~~~ 352 (682)
++++|+.|++|.| +||||||..++.+ ...+++||+.+|+|+ ..+|+.+++++++|.+ +++++.||.++.+.
T Consensus 166 P~lvYvsREKrp~~~Hh~KAGAmNaL~RvSa~~tN~p~iLnlDcD~y~nn~~~~~~amc~~~d~~~g~~~~~vQfpq~f~ 245 (720)
T PF03552_consen 166 PMLVYVSREKRPGYPHHFKAGAMNALLRVSAVMTNAPFILNLDCDMYINNSQALREAMCFFMDPKIGKKIAFVQFPQRFD 245 (720)
T ss_pred CeEEEEeccCCCCCCchhhhcccccccccceeecCCCEEEEecccccccchHHHHHHHHhhccCCCCCeeEEEeCCceeC
Confidence 4688999998754 8999999999875 458899999999999 6789999999999985 23499999999999
Q ss_pred cCCCC-hHHHhhhhhhhhhhHHHHhhccccccccccccceEEEEeeeehhc-----------------------------
Q 005700 353 NKDEN-LLTRLQDINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEDS----------------------------- 402 (682)
Q Consensus 353 n~~~~-l~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~i----------------------------- 402 (682)
|.+++ .+..-....+. ...+...+..+.+ +.|+++++||+++-..
T Consensus 246 ~i~~~d~y~~~~~~~~~---~~~~g~dG~~gp~--y~Gtgc~~rR~al~g~~~~~~~~~~~~~~~~~~~c~~~~k~~~~~ 320 (720)
T PF03552_consen 246 GIDKNDRYGNQNRVFFD---INMRGLDGLQGPF--YVGTGCFFRREALYGFDPPRYEKDPEKTCCCCSCCFGRRKKKKSK 320 (720)
T ss_pred CCCcCCCCCccceeeee---ccccccccCCCce--eeecCcceechhhhCCCCCchhcccCcceeeeecccCCccccccc
Confidence 88654 22211111111 1223333443333 7899999999874210
Q ss_pred -----------------------------------------------C--------------------------------
Q 005700 403 -----------------------------------------------G-------------------------------- 403 (682)
Q Consensus 403 -----------------------------------------------G-------------------------------- 403 (682)
|
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~FG~S~~fi~S~~~~~~~~~~~~~~~~~L~EA~~V 400 (720)
T PF03552_consen 321 KKPKKRASKRRESSSPIFALEDIEEGAEGSDEERSSLMSQKELEKKFGQSPEFIASTLMAQGGVPRSPSPASLLEEAIHV 400 (720)
T ss_pred ccchhccccccccccccccccccccccccchhhhhhcchhHHHHHHhcCCHHHHHHHHHHhcCCCCCCChHHHHHHHHHH
Confidence 0
Q ss_pred ---------------CCCCCCchhHHHHHHHHHHcCCeEEEecCce--eeeccCcCHHHHHHHhHhhhchhhHHHHHhch
Q 005700 404 ---------------GWMERTTVEDMDIAVRAHLRGWKFIFLNDVE--CQCELPESYEAYRKQQHRWHSGPMQLFRLCLP 466 (682)
Q Consensus 404 ---------------G~~~~~~~ED~~l~~rl~~~G~ki~y~~~a~--~~~e~p~t~~~~~~Qr~RW~~G~~~~~~~~~~ 466 (682)
||..++++||+.++++++++|||.+|+.... +.+.+|.++.+.+.|++||+.|.+|++.....
T Consensus 401 ~sC~YE~~T~WGkevGwiYGSvtEDv~TG~rmH~rGWrSvYc~p~r~AF~G~AP~nL~d~L~Q~~RWA~GslEI~fSr~~ 480 (720)
T PF03552_consen 401 ASCGYEDKTEWGKEVGWIYGSVTEDVLTGFRMHCRGWRSVYCNPKRPAFLGSAPINLSDRLHQVKRWATGSLEIFFSRHC 480 (720)
T ss_pred hcCCccccCCcccccceEEEecccccccceeEeeCceeeEEeccccchhcccCCCChhhhceeeeeEeeeeEeeehhcCC
Confidence 5555688999999999999999999997643 78999999999999999999999999986555
Q ss_pred hhhhc---CCCcchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhcc
Q 005700 467 DIIRA---KISMGKKFNLIFLFFLLRKLILPFYSF-TLFCIILPMTMFI 511 (682)
Q Consensus 467 ~~l~~---~l~~~~k~~~l~~~~ll~~li~p~~~f-~~~~vilp~~~~~ 511 (682)
+++.+ ++.+.+++ .++...+.|+.++ .+.+.++|..+++
T Consensus 481 Pl~~g~~~rL~~lQrL------aY~~~~~ypl~Sipll~Y~~lPalcLL 523 (720)
T PF03552_consen 481 PLWYGYGGRLKFLQRL------AYLNYMLYPLTSIPLLCYCFLPALCLL 523 (720)
T ss_pred chhccCCCCCcHHHHH------HHHHHhhhHHHHHHHHHHHHhHHHHhh
Confidence 55554 44444443 3333445555543 3444556655544
No 36
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=1.3e-21 Score=207.38 Aligned_cols=309 Identities=21% Similarity=0.233 Sum_probs=222.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCccccCCCCCCCeEEEEeecCCch-----HHHHHHHHHHHcCCC
Q 005700 174 CIVLFLIQSLDRLILCLGCFWIRFKRIKPVPKHDDTSDLESGQKGFFPMVLVQIPMCNEK-----EVYQQSIAAVCNLDW 248 (682)
Q Consensus 174 ~~~lfli~~~~~l~~~~~~~~~~~~r~rp~~~~~~~~~~~~~~~~~~P~VsVvIP~yNE~-----~~l~~tL~Sl~~qdY 248 (682)
+..+|...+........|++.....+.++..... +.+. ....+..|++|+|||+ ..++.+-+|+.+...
T Consensus 103 fa~lFcwvs~~F~tAl~GF~~L~~~~~r~~~~~p----~~p~--p~~hrTAilmPiynEd~~rVfAgLrA~~eSla~Tg~ 176 (736)
T COG2943 103 FAVLFCWVSAGFWTALMGFLVLLFGRDRYLSIAP----NEPL--PDLHRTAILMPIYNEDVNRVFAGLRATYESLAATGH 176 (736)
T ss_pred HHHHHHHHHHHHHHHHHHHhheeecCCCcCCCCC----CCCC--CcccceeEEeeccccCHHHHHHHHHHHHHHHHhhCC
Confidence 3445555555555555555555444444432211 1111 2344589999999998 457888888887543
Q ss_pred CCCceEEEEEcCCCChhHHHHHHH----HHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhhcccCCccEEEEEcCCCCC
Q 005700 249 PKSKILIQVLDDSDDPTAQTLIKE----EVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQP 324 (682)
Q Consensus 249 P~~~l~ViVvDD~sdd~t~~~l~~----~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~~~~a~~d~Vl~lDaD~~~ 324 (682)
.+.++++|+.|+.|++..-.-++ .+++. ....++.|+.|.+|.+.|+||+..-.++ ....|+|.+++|||++.
T Consensus 177 -~~~FD~FVLSDs~dpdialAEq~a~~~l~~e~-~g~~~ifYRrRr~n~~RKaGNIaDfcrR-wG~~Y~~MlVLDADSvM 253 (736)
T COG2943 177 -AEHFDFFVLSDSRDPDIALAEQKAWAELCREL-GGEGNIFYRRRRRNVKRKAGNIADFCRR-WGSAYSYMLVLDADSVM 253 (736)
T ss_pred -cccceEEEEcCCCCchhhhhHHHHHHHHHHHh-CCCCceeeehHhhhhcccccCHHHHHHH-hCcccceEEEeeccccc
Confidence 44788999999998876422111 12211 2237899999999999999999988775 36789999999999999
Q ss_pred CHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHhhhhhhhhhhHHHHh-hccccccccccccceEEEEeeeehhcC
Q 005700 325 NPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQ-VNGVFINFFGFNGTAGVWRIKALEDSG 403 (682)
Q Consensus 325 ~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~~~Rr~al~~iG 403 (682)
.+|++.++++.|+.||+.|++|+.....|. ++++.|+|++....+-...-. ..-...+-..+.|++.++|.+++.+..
T Consensus 254 tgd~lvrLv~~ME~~P~aGlIQt~P~~~gg-~TL~AR~qQFatrvYGpl~~~GLawW~~~Es~yWGHNAIIRt~aF~~hc 332 (736)
T COG2943 254 TGDCLVRLVRLMEANPDAGLIQTSPKASGG-DTLYARCQQFATRVYGPLFTAGLAWWQLGESHYWGHNAIIRTKAFIEHC 332 (736)
T ss_pred CchHHHHHHHHHhhCCCCceeecchhhcCc-chHHHHHHHHHHHHhchHHhhhhHHHhccccccccccceeechhhHHhc
Confidence 999999999999999999999999887776 589999998865433222111 000111112278999999999999875
Q ss_pred CC---------CCCCchhHHHHHHHHHHcCCeEEEecCce-eeeccCcCHHHHHHHhHhhhchhhHHHHHhchhhhhcCC
Q 005700 404 GW---------MERTTVEDMDIAVRAHLRGWKFIFLNDVE-CQCELPESYEAYRKQQHRWHSGPMQLFRLCLPDIIRAKI 473 (682)
Q Consensus 404 G~---------~~~~~~ED~~l~~rl~~~G~ki~y~~~a~-~~~e~p~t~~~~~~Qr~RW~~G~~~~~~~~~~~~l~~~l 473 (682)
|. .......|.-=+..+.+.||.+...++-. .|+|.|+++-++.++-+||+.|++|.++.. ....+
T Consensus 333 gLp~LpG~~pFgG~ilSHDfvEAALmRRaGW~v~ia~dL~GSyEE~PpnLlD~l~RDRRWC~GNLqh~rl~----~~~Gl 408 (736)
T COG2943 333 GLPPLPGRGPFGGHILSHDFVEAALMRRAGWGVWIAYDLDGSYEELPPNLLDELKRDRRWCHGNLQHFRLF----LVKGL 408 (736)
T ss_pred CCCCCCCCCCCCccccchHHHHHHHHhhcCceEEEeccCCCchhhCCchHHHHHhhhhHhhhcchhhceee----ccCCc
Confidence 44 33456789988889999999999999887 889999999999999999999999987653 33456
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHH
Q 005700 474 SMGKKFNLIFLFFLLRKLILPFYSF 498 (682)
Q Consensus 474 ~~~~k~~~l~~~~ll~~li~p~~~f 498 (682)
.+..+.+++ ...+.++..|++.+
T Consensus 409 HwvsR~h~~--tGVmsYlsaPlWfl 431 (736)
T COG2943 409 HWVSRAHFL--TGVMSYLSAPLWFL 431 (736)
T ss_pred cHHHHHHHH--HHHHHHHhhHHHHH
Confidence 666676665 44566677776544
No 37
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.91 E-value=2.7e-24 Score=210.72 Aligned_cols=181 Identities=22% Similarity=0.303 Sum_probs=144.7
Q ss_pred EEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHH
Q 005700 225 VQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAM 304 (682)
Q Consensus 225 VvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl 304 (682)
|+||+|||++.+.++|+++.+|+||...++|+|+||+|+|.|.+++++ .+..+..... .++++|+.++|.|+
T Consensus 1 VvIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~-------~~~~~~~~~~-~~~~gk~~aln~g~ 72 (183)
T cd06438 1 ILIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARA-------AGATVLERHD-PERRGKGYALDFGF 72 (183)
T ss_pred CEEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHH-------cCCeEEEeCC-CCCCCHHHHHHHHH
Confidence 689999999999999999999999877789999999999999887753 3344443332 33445999999999
Q ss_pred hhcc--cCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHhhhhhhhhhhHHHHhhccccc
Q 005700 305 NCSY--VKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGVFI 382 (682)
Q Consensus 305 ~~~~--~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~~~~~~~~~~~~~~~~~~~ 382 (682)
+.+. .+++|+++++|+|++++|+++.+++..+.++ .++|++.....+.+.+++.+.+.+.+..............+
T Consensus 73 ~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~--~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (183)
T cd06438 73 RHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAG--ARVVQAYYNSKNPDDSWITRLYAFAFLVFNRLRPLGRSNLG 150 (183)
T ss_pred HHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhC--CCeeEEEEeeeCCccCHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 8642 3579999999999999999999999999754 45788887777766688888887776555554444444444
Q ss_pred cccccccceEEEEeeeehhcCCCCCCCchhHHHH
Q 005700 383 NFFGFNGTAGVWRIKALEDSGGWMERTTVEDMDI 416 (682)
Q Consensus 383 ~~~~~~G~~~~~Rr~al~~iGG~~~~~~~ED~~l 416 (682)
....+.|+++++||+++++ |||++.+++||+++
T Consensus 151 ~~~~~~G~~~~~rr~~l~~-~g~~~~~l~ED~~~ 183 (183)
T cd06438 151 LSCQLGGTGMCFPWAVLRQ-APWAAHSLTEDLEF 183 (183)
T ss_pred CCeeecCchhhhHHHHHHh-CCCCCCCcccccCC
Confidence 4555789999999999999 89999999999874
No 38
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=99.90 E-value=9.5e-23 Score=215.75 Aligned_cols=210 Identities=16% Similarity=0.132 Sum_probs=149.6
Q ss_pred EEEeecCCch-HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHH
Q 005700 224 LVQIPMCNEK-EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKS 302 (682)
Q Consensus 224 sVvIP~yNE~-~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~ 302 (682)
||+||+|||. +.+.+||+|+.+|+++....+|+||||+|+|.+.+.+++... .....++.++..+.+.| .+.+.|.
T Consensus 1 SIIIp~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~--~~~~~~v~vi~~~~n~G-~~~a~N~ 77 (299)
T cd02510 1 SVIIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYY--KKYLPKVKVLRLKKREG-LIRARIA 77 (299)
T ss_pred CEEEEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHH--hhcCCcEEEEEcCCCCC-HHHHHHH
Confidence 6999999999 999999999999998865568999999999998887765221 12334556665555555 9999999
Q ss_pred HHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHH-------hhhhhhhhhhH---
Q 005700 303 AMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTR-------LQDINLSFHFE--- 372 (682)
Q Consensus 303 gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~-------~~~~~~~~~~~--- 372 (682)
|++ .+++|||+++|+|+.++|++|++++..+.++|.. ++.+.....+.+...... ...........
T Consensus 78 g~~---~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~-~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (299)
T cd02510 78 GAR---AATGDVLVFLDSHCEVNVGWLEPLLARIAENRKT-VVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLP 153 (299)
T ss_pred HHH---HccCCEEEEEeCCcccCccHHHHHHHHHHhCCCe-EEEeeeccccCCCeeEecCCCceeEEecccceeccccCC
Confidence 999 6899999999999999999999999999876654 444432222111000000 00000000000
Q ss_pred HH---HhhccccccccccccceEEEEeeeehhcCCCCCCCc---hhHHHHHHHHHHcCCeEEEecCceeeeccC
Q 005700 373 VE---QQVNGVFINFFGFNGTAGVWRIKALEDSGGWMERTT---VEDMDIAVRAHLRGWKFIFLNDVECQCELP 440 (682)
Q Consensus 373 ~~---~~~~~~~~~~~~~~G~~~~~Rr~al~~iGG~~~~~~---~ED~~l~~rl~~~G~ki~y~~~a~~~~e~p 440 (682)
.. .........+..++|+++++||++++++|||++... .||.|+++|+.++|+++.++|++.+.+...
T Consensus 154 ~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~vGgfDe~~~~~~~ED~Dl~~R~~~~G~~i~~~p~a~v~H~~~ 227 (299)
T cd02510 154 EEERRRESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVPCSRVGHIFR 227 (299)
T ss_pred HHHhhhcCCCCCccCccccceeeEEEHHHHHHhCCCCCcccccCchhHHHHHHHHHcCCeEEEeeccEEEEecc
Confidence 00 000111122334689999999999999999998743 499999999999999999999999876443
No 39
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.89 E-value=2.1e-22 Score=199.03 Aligned_cols=179 Identities=25% Similarity=0.344 Sum_probs=143.0
Q ss_pred EEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEec--cCCCCcchhhHHH
Q 005700 225 VQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHR--ILRDGYKAGNLKS 302 (682)
Q Consensus 225 VvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r--~~~~g~KagaLn~ 302 (682)
|+||+|||++++.+||+|+.+|+ | +++|+|+||+|+|.+.++++ . . ....++.++.+ ++.+++|++++|.
T Consensus 1 ViIp~~Ne~~~l~~~l~sl~~~~-~--~~eIivvdd~S~D~t~~~~~-~-~---~~~~~v~~i~~~~~~~~~Gk~~aln~ 72 (191)
T cd06436 1 VLVPCLNEEAVIQRTLASLLRNK-P--NFLVLVIDDASDDDTAGIVR-L-A---ITDSRVHLLRRHLPNARTGKGDALNA 72 (191)
T ss_pred CEEeccccHHHHHHHHHHHHhCC-C--CeEEEEEECCCCcCHHHHHh-h-e---ecCCcEEEEeccCCcCCCCHHHHHHH
Confidence 68999999999999999999998 5 46799999999999998876 2 1 12234444433 2334459999999
Q ss_pred HHhhcc--------cCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHhhhhhhhhhhHHH
Q 005700 303 AMNCSY--------VKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVE 374 (682)
Q Consensus 303 gl~~~~--------~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~~~~~~~~~~~ 374 (682)
|++.+. ..++|+|+++|+|+.++|++|+++...+. +|+++++++...+.|.+.+++++++.+++...+...
T Consensus 73 g~~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~~-~~~v~~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 151 (191)
T cd06436 73 AYDQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAPYFS-DPRVAGTQSRVRMYNRHKNLLTILQDLEFFIIIAAT 151 (191)
T ss_pred HHHHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHHhhc-CCceEEEeeeEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 998631 11358999999999999999999888876 699999999999999888999999999988777666
Q ss_pred HhhccccccccccccceEEEEeeeehhcCCCCCC--CchhH
Q 005700 375 QQVNGVFINFFGFNGTAGVWRIKALEDSGGWMER--TTVED 413 (682)
Q Consensus 375 ~~~~~~~~~~~~~~G~~~~~Rr~al~~iGG~~~~--~~~ED 413 (682)
+...+..+. .++.|+++++|+++++++|||.+. +++||
T Consensus 152 ~~~~~~~~~-~~~~G~~~~~r~~~l~~vgg~~~~~~~~~ED 191 (191)
T cd06436 152 QSLRALTGT-VGLGGNGQFMRLSALDGLIGEEPWSDSLLED 191 (191)
T ss_pred HHHHHhcCc-EEECCeeEEEeHHHHHHhhcCCCCchhhcCC
Confidence 666555543 457899999999999999766543 77887
No 40
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.88 E-value=3.5e-22 Score=197.90 Aligned_cols=195 Identities=18% Similarity=0.272 Sum_probs=143.7
Q ss_pred CeEEEEeecCCch-HHHHHHHHHHHcCCCCCCceEEEEEcCCCChh-HHHHHHHHHHHHhhcCCeEEEEeccCCCCcchh
Q 005700 221 PMVLVQIPMCNEK-EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPT-AQTLIKEEVLKWQEAGANIVYRHRILRDGYKAG 298 (682)
Q Consensus 221 P~VsVvIP~yNE~-~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~-t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~Kag 298 (682)
|++||+||+||++ +.+.+||+|+.+|+|++ ++|+|+||+|+|. +.++++... ....++.+...+.+.| ++.
T Consensus 1 p~vsiii~~~n~~~~~l~~~l~sl~~q~~~~--~eiivvd~gs~d~~~~~~~~~~~----~~~~~~~~~~~~~~~g-~~~ 73 (202)
T cd04184 1 PLISIVMPVYNTPEKYLREAIESVRAQTYPN--WELCIADDASTDPEVKRVLKKYA----AQDPRIKVVFREENGG-ISA 73 (202)
T ss_pred CeEEEEEecccCcHHHHHHHHHHHHhCcCCC--eEEEEEeCCCCChHHHHHHHHHH----hcCCCEEEEEcccCCC-HHH
Confidence 6799999999999 99999999999999985 5689999998775 444444332 2233455544444445 899
Q ss_pred hHHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHhhhhhhhhhhHHHHhhc
Q 005700 299 NLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVN 378 (682)
Q Consensus 299 aLn~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~~~~~~~~~~~~~~~ 378 (682)
++|.|++ .+++||++++|+|+.++|+++++++..+.++|++++|.+...................+. .... .
T Consensus 74 a~n~g~~---~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~ 145 (202)
T cd04184 74 ATNSALE---LATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDKIDEGGKRSEPFFKPDWS--PDLL---L 145 (202)
T ss_pred HHHHHHH---hhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHhccCCCCEeccccCCCCC--HHHh---h
Confidence 9999999 578999999999999999999999999966789988876544322211111111000000 0000 0
Q ss_pred cccccccccccceEEEEeeeehhcCCCCCC-CchhHHHHHHHHHHcCCeEEEecCcee
Q 005700 379 GVFINFFGFNGTAGVWRIKALEDSGGWMER-TTVEDMDIAVRAHLRGWKFIFLNDVEC 435 (682)
Q Consensus 379 ~~~~~~~~~~G~~~~~Rr~al~~iGG~~~~-~~~ED~~l~~rl~~~G~ki~y~~~a~~ 435 (682)
. ....|+++++||++++++|||++. ...||.++++|+.++|+++.++|++..
T Consensus 146 ~-----~~~~~~~~~~~r~~~~~iggf~~~~~~~eD~~l~~rl~~~g~~~~~~~~~~~ 198 (202)
T cd04184 146 S-----QNYIGHLLVYRRSLVRQVGGFREGFEGAQDYDLVLRVSEHTDRIAHIPRVLY 198 (202)
T ss_pred h-----cCCccceEeEEHHHHHHhCCCCcCcccchhHHHHHHHHhccceEEEccHhhh
Confidence 0 124577889999999999999876 357999999999999999999998754
No 41
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.88 E-value=2.7e-22 Score=198.69 Aligned_cols=196 Identities=16% Similarity=0.208 Sum_probs=147.2
Q ss_pred EEEeecCCch--HHHHHHHHHHHcCCCCCCceEEEEEcCCC-ChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhH
Q 005700 224 LVQIPMCNEK--EVYQQSIAAVCNLDWPKSKILIQVLDDSD-DPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNL 300 (682)
Q Consensus 224 sVvIP~yNE~--~~l~~tL~Sl~~qdYP~~~l~ViVvDD~s-dd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaL 300 (682)
||+||+||++ +.+++||+|+.+|+|++. +|+|+||++ +|.+.+++++..+ +.+ +.+...+.+.| +++|+
T Consensus 1 sviip~~n~~~~~~l~~~l~Sl~~q~~~~~--eiiivdd~ss~d~t~~~~~~~~~---~~~--i~~i~~~~n~G-~~~a~ 72 (201)
T cd04195 1 SVLMSVYIKEKPEFLREALESILKQTLPPD--EVVLVKDGPVTQSLNEVLEEFKR---KLP--LKVVPLEKNRG-LGKAL 72 (201)
T ss_pred CEEEEccccchHHHHHHHHHHHHhcCCCCc--EEEEEECCCCchhHHHHHHHHHh---cCC--eEEEEcCcccc-HHHHH
Confidence 6899999997 699999999999999964 477777765 8888888776543 222 45555555555 99999
Q ss_pred HHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHhhhhhhhhhhHHHHhhccc
Q 005700 301 KSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGV 380 (682)
Q Consensus 301 n~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~~~~~~~~~~~~~~~~~ 380 (682)
|.|++ .+++|||+++|+|+.++|+++++++..++++|+++++.+.....+.+............ .......
T Consensus 73 N~g~~---~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---- 143 (201)
T cd04195 73 NEGLK---HCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGNDIGKRRLPTS--HDDILKF---- 143 (201)
T ss_pred HHHHH---hcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCeeccccCCCC--HHHHHHH----
Confidence 99999 67999999999999999999999999998889999999877665443321110000000 0000000
Q ss_pred cccccccccceEEEEeeeehhcCCCCCCCchhHHHHHHHHHHcCCeEEEecCceee
Q 005700 381 FINFFGFNGTAGVWRIKALEDSGGWMERTTVEDMDIAVRAHLRGWKFIFLNDVECQ 436 (682)
Q Consensus 381 ~~~~~~~~G~~~~~Rr~al~~iGG~~~~~~~ED~~l~~rl~~~G~ki~y~~~a~~~ 436 (682)
......+.+.++++||++++++|||++....||++++.++..+|+++.++|++.++
T Consensus 144 ~~~~~~~~~~~~~~rr~~~~~~g~~~~~~~~eD~~~~~r~~~~g~~~~~~~~~~~~ 199 (201)
T cd04195 144 ARRRSPFNHPTVMFRKSKVLAVGGYQDLPLVEDYALWARMLANGARFANLPEILVK 199 (201)
T ss_pred hccCCCCCChHHhhhHHHHHHcCCcCCCCCchHHHHHHHHHHcCCceecccHHHhh
Confidence 01112256778899999999999998888899999999999999999999987643
No 42
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=99.86 E-value=3.2e-21 Score=190.37 Aligned_cols=142 Identities=29% Similarity=0.516 Sum_probs=127.2
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHhhhhhhhhhhHHHHhhccccccccccccceEE
Q 005700 314 FVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGVFINFFGFNGTAGV 393 (682)
Q Consensus 314 ~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 393 (682)
||+++|+|+.++||+++++++.++ +|+++++|++..+.+ .++++++++.+++.......+...+..+....++|++++
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~-~~~~~~vq~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 78 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALE-DPKVDAVQGPIIFRN-RGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGML 78 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHh-CCCceEEEccEEecC-CCChhheeehhhhhhhhhhhHHHHHhcCCCccccCccee
Confidence 689999999999999999999999 799999999998864 468899999998765555555554555566668999999
Q ss_pred EEeeeehhcCCCC-CCCchhHHHHHHHHHHcCCeEEEecCceeeeccCcCHHHHHHHhHhhhchh
Q 005700 394 WRIKALEDSGGWM-ERTTVEDMDIAVRAHLRGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGP 457 (682)
Q Consensus 394 ~Rr~al~~iGG~~-~~~~~ED~~l~~rl~~~G~ki~y~~~a~~~~e~p~t~~~~~~Qr~RW~~G~ 457 (682)
+|+++++++|||+ ....+||.+++.++.++||++.|+|++.++++.|.|++++++||+||..|.
T Consensus 79 ~r~~~l~~vg~~~~~~~~~ED~~l~~~l~~~G~~~~~~~~~~~~~~~p~t~~~~~~Qr~RW~~g~ 143 (193)
T PF13632_consen 79 FRREALREVGGFDDPFSIGEDMDLGFRLRRAGYRIVYVPDAIVYTEAPPTFRAFIRQRRRWARGA 143 (193)
T ss_pred eeHHHHHHhCcccccccccchHHHHHHHHHCCCEEEEecccceeeeCCCCHHHHHHHHHHHHhhh
Confidence 9999999999999 788899999999999999999999999999999999999999999999997
No 43
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.85 E-value=1.1e-20 Score=185.84 Aligned_cols=191 Identities=20% Similarity=0.275 Sum_probs=145.9
Q ss_pred EEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHH
Q 005700 224 LVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSA 303 (682)
Q Consensus 224 sVvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~g 303 (682)
||+||+||+++.++++|+|+.+|++++ ++|+|+||+|+|.+.+.+++... . +.+....++. +++.++|.|
T Consensus 1 sivi~~~n~~~~l~~~l~sl~~q~~~~--~evivvDd~s~d~~~~~~~~~~~----~---~~~~~~~~~~-g~~~a~n~~ 70 (202)
T cd06433 1 SIITPTYNQAETLEETIDSVLSQTYPN--IEYIVIDGGSTDGTVDIIKKYED----K---ITYWISEPDK-GIYDAMNKG 70 (202)
T ss_pred CEEEeccchHHHHHHHHHHHHhCCCCC--ceEEEEeCCCCccHHHHHHHhHh----h---cEEEEecCCc-CHHHHHHHH
Confidence 689999999999999999999999986 67999999999999988775432 1 2223334444 499999999
Q ss_pred HhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHhhhhhhhhhhHHHHhhcccccc
Q 005700 304 MNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGVFIN 383 (682)
Q Consensus 304 l~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~~~~~~~~~~~~~~~~~~~~ 383 (682)
++ .+++|||+++|+|+.+.|+++.+++..+..+++.+++.|.....+.+........ ............
T Consensus 71 ~~---~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~---- 139 (202)
T cd06433 71 IA---LATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGRVIGRRR----PPPFLDKFLLYG---- 139 (202)
T ss_pred HH---HcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCCcccCCC----CcchhhhHHhhc----
Confidence 99 5789999999999999999999999777767899999988766544432211110 000011111111
Q ss_pred ccccccceEEEEeeeehhcCCCCCC-CchhHHHHHHHHHHcCCeEEEecCceee
Q 005700 384 FFGFNGTAGVWRIKALEDSGGWMER-TTVEDMDIAVRAHLRGWKFIFLNDVECQ 436 (682)
Q Consensus 384 ~~~~~G~~~~~Rr~al~~iGG~~~~-~~~ED~~l~~rl~~~G~ki~y~~~a~~~ 436 (682)
..+.++++++|+++++++|+|++. ...||.+++.++.++|+++.++|...++
T Consensus 140 -~~~~~~~~~~~~~~~~~~~~f~~~~~~~~D~~~~~r~~~~g~~~~~~~~~~~~ 192 (202)
T cd06433 140 -MPICHQATFFRRSLFEKYGGFDESYRIAADYDLLLRLLLAGKIFKYLPEVLAA 192 (202)
T ss_pred -CcccCcceEEEHHHHHHhCCCchhhCchhhHHHHHHHHHcCCceEecchhhhh
Confidence 125677889999999999999775 4679999999999999999999988754
No 44
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=99.85 E-value=4.2e-20 Score=186.11 Aligned_cols=203 Identities=12% Similarity=0.098 Sum_probs=141.1
Q ss_pred EEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEecc-CCCCcchhhHHHH
Q 005700 225 VQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRI-LRDGYKAGNLKSA 303 (682)
Q Consensus 225 VvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~-~~~g~KagaLn~g 303 (682)
|+||+||+++.+++||+|+.+|+||+ .++|+|+||+|+|.+.+++++..++.+..+++++..... ....+.+.++|.|
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q~~~~-~~eiiVvDd~S~d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~N~g 79 (219)
T cd06913 1 IILPVHNGEQWLDECLESVLQQDFEG-TLELSVFNDASTDKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKNQA 79 (219)
T ss_pred CEEeecCcHHHHHHHHHHHHhCCCCC-CEEEEEEeCCCCccHHHHHHHHHHhCcccCeEEEEecccCCCCccHHHHHHHH
Confidence 68999999999999999999999984 578999999999999998887665544444544433222 1223488899999
Q ss_pred HhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCC-ChHHHhhhhhhhhhhHHHHhhccccc
Q 005700 304 MNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDE-NLLTRLQDINLSFHFEVEQQVNGVFI 382 (682)
Q Consensus 304 l~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~-~l~t~~~~~~~~~~~~~~~~~~~~~~ 382 (682)
++ .+++||++++|+|+.++|+++.+++..+.+++. .++.+.......+. ....+.... ........+.... .+
T Consensus 80 ~~---~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~ 153 (219)
T cd06913 80 IA---QSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPN-SIIGCQVRRIPEDSTERYTRWINT-LTREQLLTQVYTS-HG 153 (219)
T ss_pred HH---hcCCCEEEEECCCccCChhHHHHHHHHHHhCCC-cEEEEEEEecCcccchhhHHHHHh-cCHHHHHHHHHhh-cC
Confidence 98 689999999999999999999999888876664 34444332222211 111111110 0000000011100 11
Q ss_pred cccccccceEEEEeeeehhcCCCCCC--CchhHHHHHHHHHHcCCeEEEecCceee
Q 005700 383 NFFGFNGTAGVWRIKALEDSGGWMER--TTVEDMDIAVRAHLRGWKFIFLNDVECQ 436 (682)
Q Consensus 383 ~~~~~~G~~~~~Rr~al~~iGG~~~~--~~~ED~~l~~rl~~~G~ki~y~~~a~~~ 436 (682)
.. .....+++||++++++|||++. ...||.+++.|+.++|+++.+++.+...
T Consensus 154 ~~--~~~~~~~~rr~~~~~~g~f~~~~~~~~eD~~l~~r~~~~g~~i~~~~~~~~~ 207 (219)
T cd06913 154 PT--VIMPTWFCSREWFSHVGPFDEGGKGVPEDLLFFYEHLRKGGGVYRVDRCLLL 207 (219)
T ss_pred Cc--cccccceeehhHHhhcCCccchhccchhHHHHHHHHHHcCCceEEEcceeee
Confidence 11 2233468999999999999875 3569999999999999999999998743
No 45
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=99.85 E-value=5.9e-20 Score=188.48 Aligned_cols=210 Identities=18% Similarity=0.175 Sum_probs=150.0
Q ss_pred CCCCeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcch
Q 005700 218 GFFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKA 297 (682)
Q Consensus 218 ~~~P~VsVvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~Ka 297 (682)
...|.|+|+||+|||++.+..+++++.++..+...++|+|+||+|+|.|.+++++..++++ ..++.+.....+.| ++
T Consensus 6 ~~~~~vsVvIp~yne~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~~~~~~~--~~~v~~~~~~~n~G-~~ 82 (243)
T PLN02726 6 EGAMKYSIIVPTYNERLNIALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQLQKVYG--EDRILLRPRPGKLG-LG 82 (243)
T ss_pred CCCceEEEEEccCCchhhHHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHHHHHhcC--CCcEEEEecCCCCC-HH
Confidence 4568999999999999999999998876432222678999999999999999887655332 23444444455555 99
Q ss_pred hhHHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCC-C--ChHHHhhhhhhhhhhHHH
Q 005700 298 GNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKD-E--NLLTRLQDINLSFHFEVE 374 (682)
Q Consensus 298 gaLn~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~-~--~l~t~~~~~~~~~~~~~~ 374 (682)
.|+|.|++ .+++||++++|+|+.++|++|.+++..+.+ ++.++|.|.....+.. . .+..+....... . ..
T Consensus 83 ~a~n~g~~---~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~-~~~~~v~g~r~~~~~~~~~~~~~r~~~~~~~~--~-~~ 155 (243)
T PLN02726 83 TAYIHGLK---HASGDFVVIMDADLSHHPKYLPSFIKKQRE-TGADIVTGTRYVKGGGVHGWDLRRKLTSRGAN--V-LA 155 (243)
T ss_pred HHHHHHHH---HcCCCEEEEEcCCCCCCHHHHHHHHHHHHh-cCCcEEEEccccCCCCcCCccHHHHHHHHHHH--H-HH
Confidence 99999999 578999999999999999999999999874 5778888864332221 1 122222111110 0 01
Q ss_pred HhhccccccccccccceEEEEeeeehhcCCCCC-CCchhHHHHHHHHHHcCCeEEEecCceeeecc
Q 005700 375 QQVNGVFINFFGFNGTAGVWRIKALEDSGGWME-RTTVEDMDIAVRAHLRGWKFIFLNDVECQCEL 439 (682)
Q Consensus 375 ~~~~~~~~~~~~~~G~~~~~Rr~al~~iGG~~~-~~~~ED~~l~~rl~~~G~ki~y~~~a~~~~e~ 439 (682)
..... .......|.+.++||+++++++.+.+ ....+|.|++.++..+|+++..+|.....+..
T Consensus 156 ~~~~~--~~~~d~~g~~~~~rr~~~~~i~~~~~~~~~~~~~el~~~~~~~g~~i~~vp~~~~~r~~ 219 (243)
T PLN02726 156 QTLLW--PGVSDLTGSFRLYKRSALEDLVSSVVSKGYVFQMEIIVRASRKGYRIEEVPITFVDRVY 219 (243)
T ss_pred HHHhC--CCCCcCCCcccceeHHHHHHHHhhccCCCcEEehHHHHHHHHcCCcEEEeCcEEeCCCC
Confidence 11111 12233578889999999999975433 45667999999999999999999988766543
No 46
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=99.85 E-value=8.4e-21 Score=192.99 Aligned_cols=203 Identities=18% Similarity=0.204 Sum_probs=142.7
Q ss_pred EEeecCCch-HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHH
Q 005700 225 VQIPMCNEK-EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSA 303 (682)
Q Consensus 225 VvIP~yNE~-~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~g 303 (682)
++||+|||+ +.+.+||+|+.+|. .+|+|+||+|++++....+. ...++.++..+.+.| +++++|.|
T Consensus 1 ~vI~~yn~~~~~l~~~l~sl~~q~-----~~iivvDn~s~~~~~~~~~~-------~~~~i~~i~~~~n~G-~~~a~N~g 67 (237)
T cd02526 1 AVVVTYNPDLSKLKELLAALAEQV-----DKVVVVDNSSGNDIELRLRL-------NSEKIELIHLGENLG-IAKALNIG 67 (237)
T ss_pred CEEEEecCCHHHHHHHHHHHhccC-----CEEEEEeCCCCccHHHHhhc-------cCCcEEEEECCCcee-hHHhhhHH
Confidence 579999999 99999999999982 35889999999887654331 234555665666666 99999999
Q ss_pred HhhcccCCccEEEEEcCCCCCCHHHHHHHH---HHhhcCCCeeEEEeeeEeecCCCChHHHhhhhhhhhhhHHHHhhccc
Q 005700 304 MNCSYVKDYEFVAIFDADFQPNPDFLRRTV---PHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGV 380 (682)
Q Consensus 304 l~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv---~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~~~~~~~~~~~~~~~~~ 380 (682)
++.+...++|||+++|+|+.++|++|.+++ ..+..+++++++++.....+.. ............. ...... ...
T Consensus 68 ~~~a~~~~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~-~~~ 144 (237)
T cd02526 68 IKAALENGADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTG-ENSPGVRKSGYKL-RIQKEG-EEG 144 (237)
T ss_pred HHHHHhCCCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCC-eeccceeccCccc-eecccc-cCC
Confidence 995322256999999999999999999994 5555577887776654322221 1111111111100 000000 011
Q ss_pred cccccccccceEEEEeeeehhcCCCCCCCc--hhHHHHHHHHHHcCCeEEEecCceeeeccCcCH
Q 005700 381 FINFFGFNGTAGVWRIKALEDSGGWMERTT--VEDMDIAVRAHLRGWKFIFLNDVECQCELPESY 443 (682)
Q Consensus 381 ~~~~~~~~G~~~~~Rr~al~~iGG~~~~~~--~ED~~l~~rl~~~G~ki~y~~~a~~~~e~p~t~ 443 (682)
........|+++++||++++++|||++... +||.+++.|+.++|+++.++|++.+++..+.+-
T Consensus 145 ~~~~~~~~~~~~~~rr~~~~~~ggfd~~~~~~~eD~d~~~r~~~~G~~~~~~~~~~v~h~~~~~~ 209 (237)
T cd02526 145 LKEVDFLITSGSLISLEALEKVGGFDEDLFIDYVDTEWCLRARSKGYKIYVVPDAVLKHELGDKR 209 (237)
T ss_pred ceEeeeeeccceEEcHHHHHHhCCCCHHHcCccchHHHHHHHHHcCCcEEEEcCeEEEecccCcc
Confidence 112222457889999999999999987643 689999999999999999999999988876653
No 47
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.85 E-value=2.4e-20 Score=186.04 Aligned_cols=197 Identities=18% Similarity=0.131 Sum_probs=147.1
Q ss_pred EEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHH
Q 005700 224 LVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSA 303 (682)
Q Consensus 224 sVvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~g 303 (682)
||+||+||+++.+.++|+|+++|+|| .++|+|+||||+|.+.+++++...++ +..+.+...+.+.| +++++|.|
T Consensus 1 sIvIp~yn~~~~l~~~l~sl~~q~~~--~~eiiVvddgS~d~t~~~~~~~~~~~---~~~~~~~~~~~~~G-~~~~~n~g 74 (214)
T cd04196 1 AVLMATYNGEKYLREQLDSILAQTYK--NDELIISDDGSTDGTVEIIKEYIDKD---PFIIILIRNGKNLG-VARNFESL 74 (214)
T ss_pred CEEEEecCcHHHHHHHHHHHHhCcCC--CeEEEEEeCCCCCCcHHHHHHHHhcC---CceEEEEeCCCCcc-HHHHHHHH
Confidence 58999999999999999999999998 47799999999999998888665422 23445554555555 99999999
Q ss_pred HhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHhhhhhhhhh--hHHHHhhcccc
Q 005700 304 MNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFH--FEVEQQVNGVF 381 (682)
Q Consensus 304 l~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~~~~~~~--~~~~~~~~~~~ 381 (682)
++ .+++|||+++|+|+.++|++|.+++..+..+++.+++.+.....+.+............... .......
T Consensus 75 ~~---~~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 147 (214)
T cd04196 75 LQ---AADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVDENGNPIGESFFEYQKIKPGTSFNNLL---- 147 (214)
T ss_pred HH---hCCCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcEEECCCCCCcccccccccccCCccCHHHHH----
Confidence 98 68999999999999999999999999976778888888876554443321111111000000 0000000
Q ss_pred ccccccccceEEEEeeeehhcCCCCCC-CchhHHHHHHHHHHcCCeEEEecCcee
Q 005700 382 INFFGFNGTAGVWRIKALEDSGGWMER-TTVEDMDIAVRAHLRGWKFIFLNDVEC 435 (682)
Q Consensus 382 ~~~~~~~G~~~~~Rr~al~~iGG~~~~-~~~ED~~l~~rl~~~G~ki~y~~~a~~ 435 (682)
......|+++++|+++++++|++.+. ...||.++..++.. |.++.+++++.+
T Consensus 148 -~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~-~~~~~~~~~~~~ 200 (214)
T cd04196 148 -FQNVVTGCTMAFNRELLELALPFPDADVIMHDWWLALLASA-FGKVVFLDEPLI 200 (214)
T ss_pred -HhCccCCceeeEEHHHHHhhccccccccccchHHHHHHHHH-cCceEEcchhHH
Confidence 11125788999999999999999877 67899999998877 668999988764
No 48
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.84 E-value=3.5e-20 Score=183.96 Aligned_cols=177 Identities=16% Similarity=0.169 Sum_probs=144.8
Q ss_pred EEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHH
Q 005700 225 VQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAM 304 (682)
Q Consensus 225 VvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl 304 (682)
|+||+||+++.+.++|+|+.+|++|.. +|+|+||+|+|.+.+.+++..+ ..++.+...+.+.| .+.++|.|+
T Consensus 1 viI~~~n~~~~l~~~l~sl~~q~~~~~--eiiivD~~s~d~t~~~~~~~~~-----~~~i~~~~~~~n~g-~~~~~n~~~ 72 (202)
T cd04185 1 AVVVTYNRLDLLKECLDALLAQTRPPD--HIIVIDNASTDGTAEWLTSLGD-----LDNIVYLRLPENLG-GAGGFYEGV 72 (202)
T ss_pred CEEEeeCCHHHHHHHHHHHHhccCCCc--eEEEEECCCCcchHHHHHHhcC-----CCceEEEECccccc-hhhHHHHHH
Confidence 689999999999999999999999964 5899999999999988875432 12255555566666 888889988
Q ss_pred hhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHhhhhhhhhhhHHHHhhccccccc
Q 005700 305 NCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGVFINF 384 (682)
Q Consensus 305 ~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~~~~~~~~~~~~~~~~~~~~~ 384 (682)
+.+..+++|+++++|+|+.++|+++++++..+. +++++++.+.....+.
T Consensus 73 ~~a~~~~~d~v~~ld~D~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~------------------------------ 121 (202)
T cd04185 73 RRAYELGYDWIWLMDDDAIPDPDALEKLLAYAD-KDNPQFLAPLVLDPDG------------------------------ 121 (202)
T ss_pred HHHhccCCCEEEEeCCCCCcChHHHHHHHHHHh-cCCceEecceeEcCCC------------------------------
Confidence 865446899999999999999999999999998 6888888775432211
Q ss_pred cccccceEEEEeeeehhcCCCCCC--CchhHHHHHHHHHHcCCeEEEecCceeeeccCcCHH
Q 005700 385 FGFNGTAGVWRIKALEDSGGWMER--TTVEDMDIAVRAHLRGWKFIFLNDVECQCELPESYE 444 (682)
Q Consensus 385 ~~~~G~~~~~Rr~al~~iGG~~~~--~~~ED~~l~~rl~~~G~ki~y~~~a~~~~e~p~t~~ 444 (682)
+++++++||++++++|++++. ..+||.+++.++.++|+++ ++|++.+++..+.+..
T Consensus 122 ---~~~~~~~~~~~~~~~g~~~~~~~~~~eD~~~~~r~~~~G~~i-~~~~~~~~h~~~~~~~ 179 (202)
T cd04185 122 ---SFVGVLISRRVVEKIGLPDKEFFIWGDDTEYTLRASKAGPGI-YVPDAVVVHKTAINKG 179 (202)
T ss_pred ---ceEEEEEeHHHHHHhCCCChhhhccchHHHHHHHHHHcCCcE-EecceEEEEccccccc
Confidence 245689999999999988765 4579999999999999999 9999999888766543
No 49
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.83 E-value=6.8e-20 Score=174.61 Aligned_cols=163 Identities=17% Similarity=0.295 Sum_probs=140.1
Q ss_pred EEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHH
Q 005700 225 VQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAM 304 (682)
Q Consensus 225 VvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl 304 (682)
|+||+||+.+.+.++++|+.+|+++. .+|+|+||++++.+.+.+++. ..++.+...+.+.| +++++|.|+
T Consensus 1 vii~~~~~~~~l~~~l~sl~~~~~~~--~~iiivdd~s~~~~~~~~~~~-------~~~~~~~~~~~~~g-~~~a~n~~~ 70 (166)
T cd04186 1 IIIVNYNSLEYLKACLDSLLAQTYPD--FEVIVVDNASTDGSVELLREL-------FPEVRLIRNGENLG-FGAGNNQGI 70 (166)
T ss_pred CEEEecCCHHHHHHHHHHHHhccCCC--eEEEEEECCCCchHHHHHHHh-------CCCeEEEecCCCcC-hHHHhhHHH
Confidence 68999999999999999999999864 568899999999888776632 11444554445555 999999999
Q ss_pred hhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHhhhhhhhhhhHHHHhhccccccc
Q 005700 305 NCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGVFINF 384 (682)
Q Consensus 305 ~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~~~~~~~~~~~~~~~~~~~~~ 384 (682)
+ .+++|+++++|+|+.++|+++.+++..+.++++++++++.
T Consensus 71 ~---~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~------------------------------------ 111 (166)
T cd04186 71 R---EAKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK------------------------------------ 111 (166)
T ss_pred h---hCCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc------------------------------------
Confidence 9 5699999999999999999999999988888898888776
Q ss_pred cccccceEEEEeeeehhcCCCCCCC--chhHHHHHHHHHHcCCeEEEecCceeeec
Q 005700 385 FGFNGTAGVWRIKALEDSGGWMERT--TVEDMDIAVRAHLRGWKFIFLNDVECQCE 438 (682)
Q Consensus 385 ~~~~G~~~~~Rr~al~~iGG~~~~~--~~ED~~l~~rl~~~G~ki~y~~~a~~~~e 438 (682)
..|+++++|+++++++|||++.. .+||.+++.++.++|+++.++|++.+++.
T Consensus 112 --~~~~~~~~~~~~~~~~~~~~~~~~~~~eD~~~~~~~~~~g~~i~~~~~~~~~h~ 165 (166)
T cd04186 112 --VSGAFLLVRREVFEEVGGFDEDFFLYYEDVDLCLRARLAGYRVLYVPQAVIYHH 165 (166)
T ss_pred --CceeeEeeeHHHHHHcCCCChhhhccccHHHHHHHHHHcCCeEEEccceEEEec
Confidence 46899999999999999998763 57999999999999999999999988764
No 50
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=99.83 E-value=2.2e-19 Score=174.83 Aligned_cols=176 Identities=21% Similarity=0.185 Sum_probs=133.7
Q ss_pred EEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHH
Q 005700 225 VQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAM 304 (682)
Q Consensus 225 VvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl 304 (682)
|+||+||+.+.+++||+|+.+|+|++ .+|+|+||+|+|.+.+++++..+. .+.+++...+.+...++++++|.|+
T Consensus 1 ivip~~n~~~~l~~~l~sl~~q~~~~--~eiivvdd~s~d~t~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~n~g~ 75 (182)
T cd06420 1 LIITTYNRPEALELVLKSVLNQSILP--FEVIIADDGSTEETKELIEEFKSQ---FPIPIKHVWQEDEGFRKAKIRNKAI 75 (182)
T ss_pred CEEeecCChHHHHHHHHHHHhccCCC--CEEEEEeCCCchhHHHHHHHHHhh---cCCceEEEEcCCcchhHHHHHHHHH
Confidence 68999999999999999999999886 468899999999998888765331 2334444433333335889999999
Q ss_pred hhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHhhhhhhhhhhHHHHhhccccccc
Q 005700 305 NCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGVFINF 384 (682)
Q Consensus 305 ~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~~~~~~~~~~~~~~~~~~~~~ 384 (682)
+ .+++|||+++|+|+.++|++|++++..+ +++..++.+.. ..+.....
T Consensus 76 ~---~a~g~~i~~lD~D~~~~~~~l~~~~~~~--~~~~~v~g~~~-~~~~~~~~-------------------------- 123 (182)
T cd06420 76 A---AAKGDYLIFIDGDCIPHPDFIADHIELA--EPGVFLSGSRV-LLNEKLTE-------------------------- 123 (182)
T ss_pred H---HhcCCEEEEEcCCcccCHHHHHHHHHHh--CCCcEEeccee-ecccccce--------------------------
Confidence 9 6899999999999999999999999988 36655544433 33222110
Q ss_pred cccccceEEEEeeeehhcCCCCCCCc---hhHHHHHHHHHHcCCeEEEe-cCceeee
Q 005700 385 FGFNGTAGVWRIKALEDSGGWMERTT---VEDMDIAVRAHLRGWKFIFL-NDVECQC 437 (682)
Q Consensus 385 ~~~~G~~~~~Rr~al~~iGG~~~~~~---~ED~~l~~rl~~~G~ki~y~-~~a~~~~ 437 (682)
....|++++++|+.+.+.|||++... .||.+++.|+.++|++...+ +++.+++
T Consensus 124 ~~~~~~~~~~~r~~~~~~ggf~~~~~~~~~eD~~l~~r~~~~g~~~~~~~~~~~~~h 180 (182)
T cd06420 124 RGIRGCNMSFWKKDLLAVNGFDEEFTGWGGEDSELVARLLNSGIKFRKLKFAAIVFH 180 (182)
T ss_pred eEeccceEEEEHHHHHHhCCCCcccccCCcchHHHHHHHHHcCCcEEEecccceeee
Confidence 12567888899999999999988643 69999999999999665554 4666654
No 51
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=99.82 E-value=2.6e-19 Score=180.26 Aligned_cols=204 Identities=14% Similarity=0.104 Sum_probs=144.0
Q ss_pred EEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHH
Q 005700 225 VQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAM 304 (682)
Q Consensus 225 VvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl 304 (682)
|+||+|||++.+.++|+|+.+|.++ ..++|+||||+|+|.+.+++++..+ ...++.+...+.+.| ++.|+|.|+
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q~~~-~~~eiiiVDd~S~d~t~~~~~~~~~----~~~~i~~~~~~~n~G-~~~a~n~g~ 74 (224)
T cd06442 1 IIIPTYNERENIPELIERLDAALKG-IDYEIIVVDDNSPDGTAEIVRELAK----EYPRVRLIVRPGKRG-LGSAYIEGF 74 (224)
T ss_pred CeEeccchhhhHHHHHHHHHHhhcC-CCeEEEEEeCCCCCChHHHHHHHHH----hCCceEEEecCCCCC-hHHHHHHHH
Confidence 6899999999999999999999982 3578999999999999888776543 233444444555555 999999999
Q ss_pred hhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCC-CChHHHhhhhhhhhhhHHHHhhcccccc
Q 005700 305 NCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKD-ENLLTRLQDINLSFHFEVEQQVNGVFIN 383 (682)
Q Consensus 305 ~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~-~~l~t~~~~~~~~~~~~~~~~~~~~~~~ 383 (682)
+ .+++|+|+++|+|+.++|+++..++..+.. ++.++|.+........ .++.. .............+.. ....
T Consensus 75 ~---~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~-~~~~~v~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~ 147 (224)
T cd06442 75 K---AARGDVIVVMDADLSHPPEYIPELLEAQLE-GGADLVIGSRYVEGGGVEGWGL-KRKLISRGANLLARLL--LGRK 147 (224)
T ss_pred H---HcCCCEEEEEECCCCCCHHHHHHHHHHHhc-CCCCEEEEeeeecCCccCCCcH-HHHHHHHHHHHHHHHH--cCCC
Confidence 9 578999999999999999999999999764 5666777654332221 11100 0000000000011111 1112
Q ss_pred ccccccceEEEEeeeehhcC-CCCCCCchhHHHHHHHHHHcCCeEEEecCceeeeccCc
Q 005700 384 FFGFNGTAGVWRIKALEDSG-GWMERTTVEDMDIAVRAHLRGWKFIFLNDVECQCELPE 441 (682)
Q Consensus 384 ~~~~~G~~~~~Rr~al~~iG-G~~~~~~~ED~~l~~rl~~~G~ki~y~~~a~~~~e~p~ 441 (682)
.....|+++++||++++++| ++......+|.+++.++.+.|+++.++|.....+..-.
T Consensus 148 ~~~~~~~~~~~~r~~~~~ig~~~~~~~~~~~~~l~~~~~~~g~~i~~~p~~~~~~~~g~ 206 (224)
T cd06442 148 VSDPTSGFRAYRREVLEKLIDSLVSKGYKFQLELLVRARRLGYRIVEVPITFVDREHGE 206 (224)
T ss_pred CCCCCCccchhhHHHHHHHhhhccCCCcEEeHHHHHHHHHcCCeEEEeCeEEeccCCCc
Confidence 22356778899999999998 55555667789999999999999999998876654433
No 52
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=99.82 E-value=3.4e-20 Score=176.78 Aligned_cols=180 Identities=31% Similarity=0.470 Sum_probs=134.9
Q ss_pred EEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHH
Q 005700 225 VQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAM 304 (682)
Q Consensus 225 VvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl 304 (682)
|+||+||+++.+.++|+|+.+|.++. .+|+|+||+|+|.+.+.+++.... ....+.+....++.| ++.++|.|+
T Consensus 1 Viip~~n~~~~l~~~l~sl~~q~~~~--~~iivvdd~s~d~t~~~~~~~~~~---~~~~~~~~~~~~~~g-~~~~~n~~~ 74 (180)
T cd06423 1 IIVPAYNEEAVIERTIESLLALDYPK--LEVIVVDDGSTDDTLEILEELAAL---YIRRVLVVRDKENGG-KAGALNAGL 74 (180)
T ss_pred CeecccChHHHHHHHHHHHHhCCCCc--eEEEEEeCCCccchHHHHHHHhcc---ccceEEEEEecccCC-chHHHHHHH
Confidence 68999999999999999999999964 568999999999998887754331 123344554555555 999999999
Q ss_pred hhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHhhhhhhhhhhHHHHhhccccccc
Q 005700 305 NCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGVFINF 384 (682)
Q Consensus 305 ~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~~~~~~~~~~~~~~~~~~~~~ 384 (682)
+ .+++|+++++|+|+.++|+++++++..+..+++++++++.....+...++........+.................
T Consensus 75 ~---~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (180)
T cd06423 75 R---HAKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQSALGGV 151 (180)
T ss_pred H---hcCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcCcceeccchheecceeeeeeehhheecce
Confidence 9 5699999999999999999999997777778999999988876655434444333332221111111111122233
Q ss_pred cccccceEEEEeeeehhcCCCCCCCchhH
Q 005700 385 FGFNGTAGVWRIKALEDSGGWMERTTVED 413 (682)
Q Consensus 385 ~~~~G~~~~~Rr~al~~iGG~~~~~~~ED 413 (682)
...+|+++++|+++++++|||++..++||
T Consensus 152 ~~~~g~~~~~~~~~~~~~ggf~~~~~~eD 180 (180)
T cd06423 152 LVLSGAFGAFRREALREVGGWDEDTLTED 180 (180)
T ss_pred eecCchHHHHHHHHHHHhCCccccCcCCC
Confidence 45789999999999999999999999998
No 53
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.81 E-value=6.7e-19 Score=176.90 Aligned_cols=184 Identities=17% Similarity=0.239 Sum_probs=133.8
Q ss_pred EEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHH
Q 005700 223 VLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKS 302 (682)
Q Consensus 223 VsVvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~ 302 (682)
|||+||+||+++.+.++|+|+.+|+|++ ++|+|+||+|+|.+.+.+++ .++.+.. .+.| ++.++|.
T Consensus 1 vsvii~~~n~~~~l~~~l~sl~~q~~~~--~evivvdd~s~d~~~~~~~~---------~~~~~~~--~~~g-~~~a~n~ 66 (221)
T cd02522 1 LSIIIPTLNEAENLPRLLASLRRLNPLP--LEIIVVDGGSTDGTVAIARS---------AGVVVIS--SPKG-RARQMNA 66 (221)
T ss_pred CEEEEEccCcHHHHHHHHHHHHhccCCC--cEEEEEeCCCCccHHHHHhc---------CCeEEEe--CCcC-HHHHHHH
Confidence 6899999999999999999999999854 66899999999998877652 3334432 2344 8899999
Q ss_pred HHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHhhhhhhhhhhHHHHhhccccc
Q 005700 303 AMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGVFI 382 (682)
Q Consensus 303 gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~~~~~~~~~~~~~~~~~~~ 382 (682)
|++ .+++|+|+++|+|+.++|+++++++..+.. ++..++.......+.+ ...+...... ......
T Consensus 67 g~~---~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~--------~~~~~~- 131 (221)
T cd02522 67 GAA---AARGDWLLFLHADTRLPPDWDAAIIETLRA-DGAVAGAFRLRFDDPG--PRLRLLELGA--------NLRSRL- 131 (221)
T ss_pred HHH---hccCCEEEEEcCCCCCChhHHHHHHHHhhc-CCcEEEEEEeeecCCc--cchhhhhhcc--------cceecc-
Confidence 999 578999999999999999999999877764 4444444333333222 1111111100 000000
Q ss_pred cccccccceEEEEeeeehhcCCCCCCCchhHHHHHHHHHHcCCeEEEecCceee
Q 005700 383 NFFGFNGTAGVWRIKALEDSGGWMERTTVEDMDIAVRAHLRGWKFIFLNDVECQ 436 (682)
Q Consensus 383 ~~~~~~G~~~~~Rr~al~~iGG~~~~~~~ED~~l~~rl~~~G~ki~y~~~a~~~ 436 (682)
......+.++++|+++++++|||++....||.+++.++.++|+++.+ |...+.
T Consensus 132 ~~~~~~~~~~~~r~~~~~~~G~fd~~~~~ED~d~~~r~~~~G~~~~~-~~~~~~ 184 (221)
T cd02522 132 FGLPYGDQGLFIRRELFEELGGFPELPLMEDVELVRRLRRRGRPALL-PSPVTT 184 (221)
T ss_pred cCCCcCCceEEEEHHHHHHhCCCCccccccHHHHHHHHHhCCCEEEc-Cceeee
Confidence 11124566899999999999999998899999999999999999877 655543
No 54
>PRK10018 putative glycosyl transferase; Provisional
Probab=99.81 E-value=1.6e-18 Score=180.93 Aligned_cols=228 Identities=14% Similarity=0.135 Sum_probs=149.1
Q ss_pred CCCeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchh
Q 005700 219 FFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAG 298 (682)
Q Consensus 219 ~~P~VsVvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~Kag 298 (682)
..|.|||+||+||+++.+.++|+|+++|+||+ ++|+|+||+|++ .+.+++..+++ ...++.+...+.+.| .+.
T Consensus 3 ~~p~VSVIip~yN~~~~l~~~l~Svl~Qt~~~--~EiIVVDDgS~~--~~~~~~~~~~~--~~~ri~~i~~~~n~G-~~~ 75 (279)
T PRK10018 3 DNPLISIYMPTWNRQQLAIRAIKSVLRQDYSN--WEMIIVDDCSTS--WEQLQQYVTAL--NDPRITYIHNDINSG-ACA 75 (279)
T ss_pred CCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCC--eEEEEEECCCCC--HHHHHHHHHHc--CCCCEEEEECCCCCC-HHH
Confidence 46899999999999999999999999999986 679999999873 33444444332 234666666665555 999
Q ss_pred hHHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHhhhhhh--hhhhHHHHh
Q 005700 299 NLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINL--SFHFEVEQQ 376 (682)
Q Consensus 299 aLn~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~~~~--~~~~~~~~~ 376 (682)
|+|.|++ .+++|||+++|+|+.++|+.|..++..+...+..+++.+...... +.. ......... .........
T Consensus 76 a~N~gi~---~a~g~~I~~lDaDD~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~p~~~~~~~~~ 150 (279)
T PRK10018 76 VRNQAIM---LAQGEYITGIDDDDEWTPNRLSVFLAHKQQLVTHAFLYANDYVCQ-GEV-YSQPASLPLYPKSPYSRRLF 150 (279)
T ss_pred HHHHHHH---HcCCCEEEEECCCCCCCccHHHHHHHHHHhCCCccEEEccceeec-Ccc-cccccccCCCCCCCCCHHHH
Confidence 9999999 689999999999999999999999999876566666655432211 110 000000000 000000001
Q ss_pred hccccccccccccceEEEEeeeehhcCCCCCC-CchhHHHHHHHHHHcCCeEEEecCce-eeeccCcCHHHHHHHhHhhh
Q 005700 377 VNGVFINFFGFNGTAGVWRIKALEDSGGWMER-TTVEDMDIAVRAHLRGWKFIFLNDVE-CQCELPESYEAYRKQQHRWH 454 (682)
Q Consensus 377 ~~~~~~~~~~~~G~~~~~Rr~al~~iGG~~~~-~~~ED~~l~~rl~~~G~ki~y~~~a~-~~~e~p~t~~~~~~Qr~RW~ 454 (682)
.. .+..|+..+.++..+.+ ++|++. ...||+++++|+..+|++...+|++. .++..+.+.+......+ .
T Consensus 151 ~~------~n~ig~~~~~~~~~~~~-~~fd~~~~~~eDydlwlrl~~~~~~~~~~~~~l~~y~~~~~s~~~~~s~~k--~ 221 (279)
T PRK10018 151 YK------RNIIGNQVFTWAWRFKE-CLFDTELKAAQDYDIFLRMVVEYGEPWKVEEATQILHINHGEMQITSSPKK--F 221 (279)
T ss_pred HH------hcCcCceeeehhhhhhh-cccCCCCCccccHHHHHHHHHhcCceEeeccceEEEEcCCCCccccCCHHH--H
Confidence 10 11345556666665554 568655 45899999999999999999999985 44544554421111111 3
Q ss_pred chhhHHHHHhchh
Q 005700 455 SGPMQLFRLCLPD 467 (682)
Q Consensus 455 ~G~~~~~~~~~~~ 467 (682)
.+..+.++++...
T Consensus 222 ~~~~~~~rk~~~~ 234 (279)
T PRK10018 222 SGYFHFYRKHKDK 234 (279)
T ss_pred HHHHHHHHHhhhh
Confidence 4444666666543
No 55
>PRK10073 putative glycosyl transferase; Provisional
Probab=99.80 E-value=5.9e-19 Score=188.90 Aligned_cols=202 Identities=13% Similarity=0.171 Sum_probs=140.9
Q ss_pred CCCeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchh
Q 005700 219 FFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAG 298 (682)
Q Consensus 219 ~~P~VsVvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~Kag 298 (682)
..|.|||+||+||+++.+.+||+|+.+|+|++ ++|+|+||||+|.+.+++++..+ ...++.+++. ++ +|.+.
T Consensus 4 ~~p~vSVIIP~yN~~~~L~~~l~Sl~~Qt~~~--~EIIiVdDgStD~t~~i~~~~~~----~~~~i~vi~~-~n-~G~~~ 75 (328)
T PRK10073 4 STPKLSIIIPLYNAGKDFRAFMESLIAQTWTA--LEIIIVNDGSTDNSVEIAKHYAE----NYPHVRLLHQ-AN-AGVSV 75 (328)
T ss_pred CCCeEEEEEeccCCHHHHHHHHHHHHhCCCCC--eEEEEEeCCCCccHHHHHHHHHh----hCCCEEEEEC-CC-CChHH
Confidence 46899999999999999999999999999985 67999999999999988876544 3345555543 34 45999
Q ss_pred hHHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeee--EeecCCCC--hH--HHhhhhhh-hhhh
Q 005700 299 NLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARW--SFVNKDEN--LL--TRLQDINL-SFHF 371 (682)
Q Consensus 299 aLn~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~--~~~n~~~~--l~--t~~~~~~~-~~~~ 371 (682)
|.|.|++ .++||||+++|+|+.++|+++++++..+++ ++.+++.+.. .+.+.... .. .+...... ....
T Consensus 76 arN~gl~---~a~g~yi~flD~DD~~~p~~l~~l~~~~~~-~~~dvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (328)
T PRK10073 76 ARNTGLA---VATGKYVAFPDADDVVYPTMYETLMTMALE-DDLDVAQCNADWCFRDTGETWQSIPSDRLRSTGVLSGPD 151 (328)
T ss_pred HHHHHHH---hCCCCEEEEECCCCccChhHHHHHHHHHHh-CCCCEEEEccEEEEeCCCccccccccccccccceechHH
Confidence 9999999 689999999999999999999999998874 3444444332 22221110 00 00000000 0000
Q ss_pred HHHHhhccccccccccccceEEEEeeeehhcCC-CCCCCchhHHHHHHHHHHcCCeEEEecCcee
Q 005700 372 EVEQQVNGVFINFFGFNGTAGVWRIKALEDSGG-WMERTTVEDMDIAVRAHLRGWKFIFLNDVEC 435 (682)
Q Consensus 372 ~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~iGG-~~~~~~~ED~~l~~rl~~~G~ki~y~~~a~~ 435 (682)
........ ..+.....+.+|||+.+++.|. |.+....||..++.++..++.++.++++...
T Consensus 152 ~l~~~l~~---~~~~~~~~~~l~Rr~~l~~~~~~f~~~~~~eD~~~~~~~~~~~~~v~~~~~~ly 213 (328)
T PRK10073 152 WLRMALSS---RRWTHVVWLGVYRRDFIVKNNIKFEPGLHHQDIPWTTEVMFNALRVRYTEQSLY 213 (328)
T ss_pred HHHHHHhh---CCCCccHhHHHHHHHHHHHcCCccCCCCEeccHHHHHHHHHHCCEEEEECCCEE
Confidence 00011111 0111123356899999999873 5566667999999999999999999999873
No 56
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=99.78 E-value=6.4e-18 Score=169.20 Aligned_cols=195 Identities=16% Similarity=0.133 Sum_probs=136.9
Q ss_pred EEeecCCchHHHHHHHHHHHcCCC--CCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHH
Q 005700 225 VQIPMCNEKEVYQQSIAAVCNLDW--PKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKS 302 (682)
Q Consensus 225 VvIP~yNE~~~l~~tL~Sl~~qdY--P~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~ 302 (682)
|+||+|||++.+.++|+++.+|.+ +...++|+|+||+|+|.+.+++++..+++ +..+.++..+.+.| +++|+|.
T Consensus 1 iiip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~~~---~~~i~~i~~~~n~G-~~~a~~~ 76 (211)
T cd04188 1 VVIPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARKN---PALIRVLTLPKNRG-KGGAVRA 76 (211)
T ss_pred CEEcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHHhC---CCcEEEEEcccCCC-cHHHHHH
Confidence 689999999999999999999865 33357899999999999999888765432 22234555555566 9999999
Q ss_pred HHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCC----CChHHHhhhhhhhhhhHHHHhhc
Q 005700 303 AMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKD----ENLLTRLQDINLSFHFEVEQQVN 378 (682)
Q Consensus 303 gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~----~~l~t~~~~~~~~~~~~~~~~~~ 378 (682)
|++ .+++|||+++|+|+.++|+++.+++..+.+ +..++|.|........ ..+.......... . ......
T Consensus 77 g~~---~a~gd~i~~ld~D~~~~~~~l~~l~~~~~~-~~~~~v~g~r~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~ 149 (211)
T cd04188 77 GML---AARGDYILFADADLATPFEELEKLEEALKT-SGYDIAIGSRAHLASAAVVKRSWLRNLLGRGFN--F-LVRLLL 149 (211)
T ss_pred HHH---HhcCCEEEEEeCCCCCCHHHHHHHHHHHhc-cCCcEEEEEeeccCCcccccccHHHHHHHHHHH--H-HHHHHc
Confidence 999 578999999999999999999999999764 4556666655433221 1222222211111 1 111111
Q ss_pred cccccccccccceEEEEeeeehhcCCC-CCCCchhHHHHHHHHHHcCCeEEEecC
Q 005700 379 GVFINFFGFNGTAGVWRIKALEDSGGW-MERTTVEDMDIAVRAHLRGWKFIFLND 432 (682)
Q Consensus 379 ~~~~~~~~~~G~~~~~Rr~al~~iGG~-~~~~~~ED~~l~~rl~~~G~ki~y~~~ 432 (682)
+. ..........++||++++++++. ......+|.++..++.+.|+++.++|-
T Consensus 150 ~~--~~~d~~~g~~~~~r~~~~~~~~~~~~~~~~~d~el~~r~~~~g~~~~~vpi 202 (211)
T cd04188 150 GL--GIKDTQCGFKLFTRDAARRLFPRLHLERWAFDVELLVLARRLGYPIEEVPV 202 (211)
T ss_pred CC--CCcccccCceeEcHHHHHHHHhhhhccceEeeHHHHHHHHHcCCeEEEcCc
Confidence 11 11111234578999999998653 234567899999999999999999983
No 57
>PRK10063 putative glycosyl transferase; Provisional
Probab=99.77 E-value=1.6e-17 Score=170.98 Aligned_cols=190 Identities=11% Similarity=0.048 Sum_probs=131.0
Q ss_pred CeEEEEeecCCchHHHHHHHHHHHcC---CCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcch
Q 005700 221 PMVLVQIPMCNEKEVYQQSIAAVCNL---DWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKA 297 (682)
Q Consensus 221 P~VsVvIP~yNE~~~l~~tL~Sl~~q---dYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~Ka 297 (682)
|.|||+||+||+++.+.+||+|+.+| .++ .++|+|+||||+|.|.+++++..+ . .++.++. .++.| .+
T Consensus 1 ~~vSVIi~~yN~~~~l~~~l~sl~~~~~~~~~--~~EiIVvDdgStD~t~~i~~~~~~---~--~~i~~i~-~~~~G-~~ 71 (248)
T PRK10063 1 MLLSVITVAFRNLEGIVKTHASLRHLAQDPGI--SFEWIVVDGGSNDGTREFLENLNG---I--FNLRFVS-EPDNG-IY 71 (248)
T ss_pred CeEEEEEEeCCCHHHHHHHHHHHHHHHhCCCC--CEEEEEEECcCcccHHHHHHHhcc---c--CCEEEEE-CCCCC-HH
Confidence 68999999999999999999999853 344 578999999999999988875321 1 2344443 33444 99
Q ss_pred hhHHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHhhhhhhhhhhHHHHhh
Q 005700 298 GNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQV 377 (682)
Q Consensus 298 gaLn~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~~~~~~~~~~~~~~ 377 (682)
.|+|.|++ .+++|||+++|+|+...|+.++.+.....++++ .++.|.......+.....+... ......
T Consensus 72 ~A~N~Gi~---~a~g~~v~~ld~DD~~~~~~~~~~~~~~~~~~~-~~v~g~~~~~~~~~~~~~~~~~-------~~~~~~ 140 (248)
T PRK10063 72 DAMNKGIA---MAQGRFALFLNSGDIFHQDAANFVRQLKMQKDN-AMIIGDALLDFGDGHKIKRSAK-------PGWYIY 140 (248)
T ss_pred HHHHHHHH---HcCCCEEEEEeCCcccCcCHHHHHHHHHhCCCC-eEEEeeeEEEcCCCcEEEEccC-------ChhHHh
Confidence 99999999 689999999999999999876554444333334 4444443322211111111000 000000
Q ss_pred ccccccccccccceEEEEeeeehhcCCCCCC-CchhHHHHHHHHHHcCCeEEEecCceee
Q 005700 378 NGVFINFFGFNGTAGVWRIKALEDSGGWMER-TTVEDMDIAVRAHLRGWKFIFLNDVECQ 436 (682)
Q Consensus 378 ~~~~~~~~~~~G~~~~~Rr~al~~iGG~~~~-~~~ED~~l~~rl~~~G~ki~y~~~a~~~ 436 (682)
. ....++.+.+++++.++. |+|++. ...||.+++.|+..+|+++.++|...+.
T Consensus 141 ~-----~~~~~~~~~~~~~~~~~~-~~fd~~~~~~~Dydl~lrl~~~g~~~~~v~~~l~~ 194 (248)
T PRK10063 141 H-----SLPASHQAIFFPVSGLKK-WRYDLQYKVSSDYALAARLYKAGYAFKKLNGLVSE 194 (248)
T ss_pred c-----CCCCCCcEEEEEHHHHhc-CCCCcccchHHhHHHHHHHHHcCCcEEEcCceeEE
Confidence 0 112457788899998875 678665 4579999999999999999999988864
No 58
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=99.77 E-value=9.5e-17 Score=172.11 Aligned_cols=208 Identities=13% Similarity=0.090 Sum_probs=143.1
Q ss_pred CCCCeEEEEeecCCchHHHHHHHHHHHcC------CCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccC
Q 005700 218 GFFPMVLVQIPMCNEKEVYQQSIAAVCNL------DWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRIL 291 (682)
Q Consensus 218 ~~~P~VsVvIP~yNE~~~l~~tL~Sl~~q------dYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~ 291 (682)
...|.+||+||+|||++.+.++++++.++ +.|...++|+||||||+|.|.+++++..++....+.++.++..+.
T Consensus 67 ~~~~~isVVIP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~ 146 (333)
T PTZ00260 67 DSDVDLSIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLR 146 (333)
T ss_pred CCCeEEEEEEeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCC
Confidence 45788999999999999999999998763 234446889999999999999988876653211223455555555
Q ss_pred CCCcchhhHHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhc--CCCeeEEEeeeEeecCC-----CChHHHhhh
Q 005700 292 RDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKD--NEELGLVQARWSFVNKD-----ENLLTRLQD 364 (682)
Q Consensus 292 ~~g~KagaLn~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~--~p~vg~Vqg~~~~~n~~-----~~l~t~~~~ 364 (682)
|.| |++|+|.|++ .+++|+|+++|+|+..+|+.+.+++..+.+ +++.++|.|.......+ .++..+...
T Consensus 147 N~G-~~~A~~~Gi~---~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~~~~~~~~~~~~~~~r~~~~ 222 (333)
T PTZ00260 147 NKG-KGGAVRIGML---ASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRNHLVDSDVVAKRKWYRNILM 222 (333)
T ss_pred CCC-hHHHHHHHHH---HccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeeccccccCcccccCcHHHHHHH
Confidence 556 9999999999 578999999999999999999999998874 56788888875432221 123332221
Q ss_pred hhhhhhhHHHHhhccccccccccccceEEEEeeeehhcCC-CCCCCchhHHHHHHHHHHcCCeEEEecCce
Q 005700 365 INLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEDSGG-WMERTTVEDMDIAVRAHLRGWKFIFLNDVE 434 (682)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~iGG-~~~~~~~ED~~l~~rl~~~G~ki~y~~~a~ 434 (682)
..+ +.......+..... .....-+|||++++++-. .......-|.++..++.+.|+++..+|-..
T Consensus 223 ~~~--~~l~~~~~~~~i~D---~~~Gfk~~~r~~~~~i~~~~~~~~~~fd~Ell~~a~~~g~~I~EvPv~~ 288 (333)
T PTZ00260 223 YGF--HFIVNTICGTNLKD---TQCGFKLFTRETARIIFPSLHLERWAFDIEIVMIAQKLNLPIAEVPVNW 288 (333)
T ss_pred HHH--HHHHHHHcCCCccc---CCCCeEEEeHHHHHHHhhhccccCccchHHHHHHHHHcCCCEEEEceee
Confidence 111 11111111111111 223346899999887611 111223468999999999999999998753
No 59
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=99.76 E-value=9.4e-18 Score=178.15 Aligned_cols=213 Identities=19% Similarity=0.285 Sum_probs=155.6
Q ss_pred CCeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhh
Q 005700 220 FPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGN 299 (682)
Q Consensus 220 ~P~VsVvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~Kaga 299 (682)
.|.++++|++||..+.+.+|+.++.+|+|+... |+++||+|.|.+.+.+++. ...++.++...+|.| -+++
T Consensus 2 ~~~i~~iiv~yn~~~~l~~~l~~l~~~~~~~~~--iv~vDn~s~d~~~~~~~~~------~~~~v~~i~~~~NlG-~agg 72 (305)
T COG1216 2 MPKISIIIVTYNRGEDLVECLASLAAQTYPDDV--IVVVDNGSTDGSLEALKAR------FFPNVRLIENGENLG-FAGG 72 (305)
T ss_pred CcceEEEEEecCCHHHHHHHHHHHhcCCCCCcE--EEEccCCCCCCCHHHHHhh------cCCcEEEEEcCCCcc-chhh
Confidence 478999999999999999999999999999754 4489999999998887631 146777777777777 6777
Q ss_pred HHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHhhhhh---hhhhhH---H
Q 005700 300 LKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDIN---LSFHFE---V 373 (682)
Q Consensus 300 Ln~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~~~---~~~~~~---~ 373 (682)
.|.|++.+....++|++++|.|+.++|++|.+++..++.++..++++.......... ......... ...... .
T Consensus 73 ~n~g~~~a~~~~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 151 (305)
T COG1216 73 FNRGIKYALAKGDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESL-YIDRRGGESDGLTGGWRASPLL 151 (305)
T ss_pred hhHHHHHHhcCCCcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCc-chheeccccccccccceecccc
Confidence 799998653232339999999999999999999999999888888877654433221 111111000 000000 0
Q ss_pred HHhh-cccccccc-ccccceEEEEeeeehhcCCCCCC--CchhHHHHHHHHHHcCCeEEEecCceeeeccCcC
Q 005700 374 EQQV-NGVFINFF-GFNGTAGVWRIKALEDSGGWMER--TTVEDMDIAVRAHLRGWKFIFLNDVECQCELPES 442 (682)
Q Consensus 374 ~~~~-~~~~~~~~-~~~G~~~~~Rr~al~~iGG~~~~--~~~ED~~l~~rl~~~G~ki~y~~~a~~~~e~p~t 442 (682)
+... ........ .++|+++++|+++++++|++++. ...||.|++.|+.+.||++.++|++.++|..-.+
T Consensus 152 ~~~~~~~~~~~~~~~~~G~~~li~~~~~~~vG~~de~~F~y~eD~D~~~R~~~~G~~i~~~p~a~i~H~~g~s 224 (305)
T COG1216 152 EIAPDLSSYLEVVASLSGACLLIRREAFEKVGGFDERFFIYYEDVDLCLRARKAGYKIYYVPDAIIYHKIGSS 224 (305)
T ss_pred cccccccchhhhhhhcceeeeEEcHHHHHHhCCCCcccceeehHHHHHHHHHHcCCeEEEeeccEEEEeccCC
Confidence 0000 00000111 26899999999999999999886 4479999999999999999999999998865444
No 60
>KOG2571 consensus Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis]
Probab=99.76 E-value=1.8e-17 Score=188.82 Aligned_cols=150 Identities=20% Similarity=0.369 Sum_probs=134.8
Q ss_pred cCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHhhhhhhhhhhHHHHhhccccccccccc
Q 005700 309 VKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGVFINFFGFN 388 (682)
Q Consensus 309 ~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (682)
..+-+||+++|+|+.++|+++.++++.|+.||++|+++| ...|..++++...|+++|.+++..++..++.++.+.|++
T Consensus 438 ~~~v~~il~vD~dT~~~P~ai~~lv~~f~~dp~VggaCG--~I~~~~~~w~v~~Q~FEY~Ish~l~Ka~ESvFG~VsclP 515 (862)
T KOG2571|consen 438 MPSVDYILVVDADTRLDPDALYHLVKVFDEDPQVGGACG--RILNKGGSWVVAYQNFEYAISHNLQKATESVFGCVSCLP 515 (862)
T ss_pred cCcceEEEEecCCCccCcHHHHHHHHHhccCcccceecc--ccccCCCceEEeHHHHHHHHHHHHHHhhhhhceeEEecC
Confidence 345679999999999999999999999999999999999 467888899999999999999999999999999999999
Q ss_pred cceEEEEeeeehhcC----------C---CCCCCchhHHHHHHHHHHcCCeEEEecCceeeeccCcCHHHHHHHhHhhhc
Q 005700 389 GTAGVWRIKALEDSG----------G---WMERTTVEDMDIAVRAHLRGWKFIFLNDVECQCELPESYEAYRKQQHRWHS 455 (682)
Q Consensus 389 G~~~~~Rr~al~~iG----------G---~~~~~~~ED~~l~~rl~~~G~ki~y~~~a~~~~e~p~t~~~~~~Qr~RW~~ 455 (682)
|+.++||.+++.+-- + ......+||..|+.++.++||++.|++.+.+.+++|+++.+++.||+||..
T Consensus 516 Gcfs~yR~~aL~~~~~~~~y~~~~~~~~~~~~~~~geDR~L~~~llskgy~l~Y~a~s~a~t~~Pe~~~efl~QrrRW~~ 595 (862)
T KOG2571|consen 516 GCFSLYRASALMDQFVEYFYGEKFSGPRHGIQYSLGEDRWLCTLLLSKGYRLKYVAASDAETEAPESFLEFLNQRRRWLN 595 (862)
T ss_pred chhHHHHHHHHhcchHHhhhchhhcCcccccccccchhHHHHHHHHhccceeeeeccccccccCcHhHHHHHHHhhhhcc
Confidence 999999998876632 1 111247899999999999999999999999999999999999999999999
Q ss_pred hhhHH
Q 005700 456 GPMQL 460 (682)
Q Consensus 456 G~~~~ 460 (682)
|.+..
T Consensus 596 s~f~~ 600 (862)
T KOG2571|consen 596 SIFNA 600 (862)
T ss_pred cchhH
Confidence 94444
No 61
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=99.74 E-value=1.7e-17 Score=161.47 Aligned_cols=163 Identities=24% Similarity=0.353 Sum_probs=131.7
Q ss_pred EEEEeccCCCCcchhhHHHHHhhccc-CCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHh
Q 005700 284 IVYRHRILRDGYKAGNLKSAMNCSYV-KDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRL 362 (682)
Q Consensus 284 v~~~~r~~~~g~KagaLn~gl~~~~~-a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~ 362 (682)
++........+.|.+||..+++ . +++|++++.|+|+.++||+|.+++..++ +|++++|++.....+. +++...+
T Consensus 6 lvv~~~~~g~N~Kv~nL~~~~~---~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~-~p~vglVt~~~~~~~~-~~~~~~l 80 (175)
T PF13506_consen 6 LVVGGPPRGCNPKVNNLAQGLE---AGAKYDYLVISDSDIRVPPDYLRELVAPLA-DPGVGLVTGLPRGVPA-RGFWSRL 80 (175)
T ss_pred EEECCCCCCCChHHHHHHHHHH---hhCCCCEEEEECCCeeECHHHHHHHHHHHh-CCCCcEEEecccccCC-cCHHHHH
Confidence 4444444556679999999999 5 8999999999999999999999999998 4999999998776555 4666666
Q ss_pred hhhhhhhhhHHHHhhccccccccccccceEEEEeeeehhcCCCCC--CCchhHHHHHHHHHHcCCeEEEecCceeeeccC
Q 005700 363 QDINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEDSGGWME--RTTVEDMDIAVRAHLRGWKFIFLNDVECQCELP 440 (682)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~iGG~~~--~~~~ED~~l~~rl~~~G~ki~y~~~a~~~~e~p 440 (682)
.......+....+. .....+..|.++++||++++++||+.. +.+.||+.++.+++++|+++...+.+.+.+..|
T Consensus 81 ~~~~~~~~~~~~~a----~~~~~~~~G~~m~~rr~~L~~~GG~~~l~~~ladD~~l~~~~~~~G~~v~~~~~~v~~~~~~ 156 (175)
T PF13506_consen 81 EAAFFNFLPGVLQA----LGGAPFAWGGSMAFRREALEEIGGFEALADYLADDYALGRRLRARGYRVVLSPYPVVQTSVP 156 (175)
T ss_pred HHHHHhHHHHHHHH----hcCCCceecceeeeEHHHHHHcccHHHHhhhhhHHHHHHHHHHHCCCeEEEcchheeecccC
Confidence 54433333333332 223444799999999999999999865 578999999999999999999999988877777
Q ss_pred ----cCHHHHHHHhHhhhc
Q 005700 441 ----ESYEAYRKQQHRWHS 455 (682)
Q Consensus 441 ----~t~~~~~~Qr~RW~~ 455 (682)
.+++++++++.||++
T Consensus 157 ~~~~~s~~~~~~r~~RW~r 175 (175)
T PF13506_consen 157 RTLEDSFRDFFRRQLRWAR 175 (175)
T ss_pred ccccccHHHHHHHHHhhcC
Confidence 489999999999975
No 62
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=99.72 E-value=5.3e-17 Score=170.21 Aligned_cols=198 Identities=16% Similarity=0.126 Sum_probs=134.8
Q ss_pred cCCch-HHHHHHHHHHHcCCCCCCceEEEEEcCCCChh--HHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHh
Q 005700 229 MCNEK-EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPT--AQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMN 305 (682)
Q Consensus 229 ~yNE~-~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~--t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~ 305 (682)
+||++ +.++++|+|+.+|. .+|+||||+|+++ +.+.. +...++.+++.+.|.| .++|+|.|++
T Consensus 2 tyn~~~~~l~~~l~sl~~q~-----~~iiVVDN~S~~~~~~~~~~--------~~~~~i~~i~~~~N~G-~a~a~N~Gi~ 67 (281)
T TIGR01556 2 TFNPDLEHLGELITSLPKQV-----DRIIAVDNSPHSDQPLKNAR--------LRGQKIALIHLGDNQG-IAGAQNQGLD 67 (281)
T ss_pred ccCccHHHHHHHHHHHHhcC-----CEEEEEECcCCCcHhHHHHh--------ccCCCeEEEECCCCcc-hHHHHHHHHH
Confidence 79975 89999999999985 2489999997543 32221 2234566776666666 9999999999
Q ss_pred hcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCC-CeeEEEeeeEeecCCCChHHHhhhhhhhhhhHHHHhhccccccc
Q 005700 306 CSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNE-ELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGVFINF 384 (682)
Q Consensus 306 ~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p-~vg~Vqg~~~~~n~~~~l~t~~~~~~~~~~~~~~~~~~~~~~~~ 384 (682)
.+...++|||+++|+|+.++++++++++..+++++ +++++++.. +...+......................... ...
T Consensus 68 ~a~~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 145 (281)
T TIGR01556 68 ASFRRGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRF-FDRGTSRRLPAIHLDGLLLRQISLDGLTTP-QKT 145 (281)
T ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeE-EcCCCcccCCceeecccceeeecccccCCc-eec
Confidence 65445899999999999999999999999998655 777776643 221111111100000000000000000000 011
Q ss_pred cccccceEEEEeeeehhcCCCCCCC--chhHHHHHHHHHHcCCeEEEecCceeeeccCcC
Q 005700 385 FGFNGTAGVWRIKALEDSGGWMERT--TVEDMDIAVRAHLRGWKFIFLNDVECQCELPES 442 (682)
Q Consensus 385 ~~~~G~~~~~Rr~al~~iGG~~~~~--~~ED~~l~~rl~~~G~ki~y~~~a~~~~e~p~t 442 (682)
....++++++|+++++++|+|++.. -.||.|+++|+.++|+++.++|++.+++....+
T Consensus 146 ~~~~~sg~li~~~~~~~iG~fde~~fi~~~D~e~~~R~~~~G~~i~~~~~~~~~H~~g~~ 205 (281)
T TIGR01556 146 SFLISSGCLITREVYQRLGMMDEELFIDHVDTEWSLRAQNYGIPLYIDPDIVLEHRIGDS 205 (281)
T ss_pred cEEEcCcceeeHHHHHHhCCccHhhcccchHHHHHHHHHHCCCEEEEeCCEEEEEecCCc
Confidence 1134566799999999999998864 358999999999999999999999988876543
No 63
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=99.72 E-value=4.3e-17 Score=158.93 Aligned_cols=181 Identities=16% Similarity=0.142 Sum_probs=129.9
Q ss_pred EEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHH
Q 005700 225 VQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAM 304 (682)
Q Consensus 225 VvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl 304 (682)
|+||+||+++.+.+|++|+.+|.|+....+|+|+||+|+|.+.+.+++...++ ..+.+...+.+.| +++++|.|+
T Consensus 1 iii~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~~~----~~~~~~~~~~n~G-~~~a~n~g~ 75 (185)
T cd04179 1 VVIPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAARV----PRVRVIRLSRNFG-KGAAVRAGF 75 (185)
T ss_pred CeecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHHhC----CCeEEEEccCCCC-ccHHHHHHH
Confidence 68999999999999999999999854467899999999999988887654432 3334555566666 999999999
Q ss_pred hhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCC--CChHHHhhhhhhhhhhHHHHhhccccc
Q 005700 305 NCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKD--ENLLTRLQDINLSFHFEVEQQVNGVFI 382 (682)
Q Consensus 305 ~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~--~~l~t~~~~~~~~~~~~~~~~~~~~~~ 382 (682)
+ .+++|+++++|+|+.++|++|++++..+.+ ++.++|.+.....+.. .....+....... ...... ...
T Consensus 76 ~---~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~-~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~ 146 (185)
T cd04179 76 K---AARGDIVVTMDADLQHPPEDIPKLLEKLLE-GGADVVIGSRFVRGGGAGMPLLRRLGSRLFN--FLIRLL---LGV 146 (185)
T ss_pred H---HhcCCEEEEEeCCCCCCHHHHHHHHHHHhc-cCCcEEEEEeecCCCcccchHHHHHHHHHHH--HHHHHH---cCC
Confidence 9 578899999999999999999999998664 5667788776554432 2233322211111 111111 112
Q ss_pred cccccccceEEEEeeeehhcC-CCCCCCchhHHHHHHH
Q 005700 383 NFFGFNGTAGVWRIKALEDSG-GWMERTTVEDMDIAVR 419 (682)
Q Consensus 383 ~~~~~~G~~~~~Rr~al~~iG-G~~~~~~~ED~~l~~r 419 (682)
......|+++++||++++++| +..+..+.+|+++++|
T Consensus 147 ~~~~~~~~~~~~~r~~~~~i~~~~~~~~~~~~~~~~~~ 184 (185)
T cd04179 147 RISDTQSGFRLFRREVLEALLSLLESNGFEFGLELLVG 184 (185)
T ss_pred CCcCCCCceeeeHHHHHHHHHhhccccCcceeeEeeec
Confidence 233367888999999999995 3334456777777665
No 64
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=99.71 E-value=1e-17 Score=158.98 Aligned_cols=169 Identities=21% Similarity=0.292 Sum_probs=116.4
Q ss_pred EEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHH
Q 005700 224 LVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSA 303 (682)
Q Consensus 224 sVvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~g 303 (682)
||+||+||+.+.+.++++|+.+|+++ ..+|+|+||+++|.+.+++++..+ .+.++.+++.+.+.| ++.++|.|
T Consensus 1 Svvip~~n~~~~l~~~l~sl~~q~~~--~~eiivvdd~s~d~~~~~~~~~~~----~~~~i~~i~~~~n~g-~~~~~n~~ 73 (169)
T PF00535_consen 1 SVVIPTYNEAEYLERTLESLLKQTDP--DFEIIVVDDGSTDETEEILEEYAE----SDPNIRYIRNPENLG-FSAARNRG 73 (169)
T ss_dssp EEEEEESS-TTTHHHHHHHHHHHSGC--EEEEEEEECS-SSSHHHHHHHHHC----CSTTEEEEEHCCCSH-HHHHHHHH
T ss_pred CEEEEeeCCHHHHHHHHHHHhhccCC--CEEEEEeccccccccccccccccc----ccccccccccccccc-cccccccc
Confidence 79999999999999999999999666 467999999999999988875432 467778887777765 99999999
Q ss_pred HhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHhhhhhhhhhhHHHHhhcccccc
Q 005700 304 MNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGVFIN 383 (682)
Q Consensus 304 l~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~~~~~~~~~~~~~~~~~~~~ 383 (682)
++ .+++||++++|+|+.++|+++++++..+++++. +++.+....................................
T Consensus 74 ~~---~a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (169)
T PF00535_consen 74 IK---HAKGEYILFLDDDDIISPDWLEELVEALEKNPP-DVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFNNIRFWK 149 (169)
T ss_dssp HH---H--SSEEEEEETTEEE-TTHHHHHHHHHHHCTT-EEEEEEEEEEECTTETEECCCTSEEEECCHCHHHHTTHSTT
T ss_pred cc---ccceeEEEEeCCCceEcHHHHHHHHHHHHhCCC-cEEEEEEEEecCCccccccccchhhhhhhhhHHHHhhhcCC
Confidence 99 689999999999999999999999999997444 44444443333332211111110000001111112222233
Q ss_pred ccccccceEEEEeeeehhcC
Q 005700 384 FFGFNGTAGVWRIKALEDSG 403 (682)
Q Consensus 384 ~~~~~G~~~~~Rr~al~~iG 403 (682)
.....|++.++||++++++|
T Consensus 150 ~~~~~~~~~~~rr~~~~~~~ 169 (169)
T PF00535_consen 150 ISFFIGSCALFRRSVFEEIG 169 (169)
T ss_dssp SSEESSSCEEEEEHHHHHCH
T ss_pred cccccccEEEEEHHHHHhhC
Confidence 44478999999999999985
No 65
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=99.68 E-value=1.4e-15 Score=159.50 Aligned_cols=204 Identities=18% Similarity=0.264 Sum_probs=136.8
Q ss_pred EEEeecCCch------HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCC--Cc
Q 005700 224 LVQIPMCNEK------EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRD--GY 295 (682)
Q Consensus 224 sVvIP~yNE~------~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~--g~ 295 (682)
|||||++++. +.+..++.++.++.- +..++|+|+||++++.+.+.+++.++ ..+.. .++...... =+
T Consensus 1 SiIIPv~~~~~~~~i~~~l~~~l~~l~~~~~-~~~~eiIvvd~~s~~~~~~~l~~~~~---~~~~~-~~i~~~~~~~~f~ 75 (281)
T PF10111_consen 1 SIIIPVRNRSERPDILERLRNCLESLSQFQS-DPDFEIIVVDDGSSDEFDEELKKLCE---KNGFI-RYIRHEDNGEPFS 75 (281)
T ss_pred CEEEEecCCccchHHHHHHHHHHHHHHhcCC-CCCEEEEEEECCCchhHHHHHHHHHh---ccCce-EEEEcCCCCCCcC
Confidence 6999999998 345566777776432 34788999999999988666666554 23332 233222222 15
Q ss_pred chhhHHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHH---HhhcCCCeeEEEeeeEeecCCCChHHHhhhhh-hhhhh
Q 005700 296 KAGNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVP---HFKDNEELGLVQARWSFVNKDENLLTRLQDIN-LSFHF 371 (682)
Q Consensus 296 KagaLn~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~---~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~~~-~~~~~ 371 (682)
++.|+|.|++ .+++|+|+++|+|+.++|+++.+++. .+..+++ ..+..+..+.+...+. ...... .....
T Consensus 76 ~a~arN~g~~---~A~~d~l~flD~D~i~~~~~i~~~~~~~~~l~~~~~-~~~~~p~~yl~~~~~~--~~~~~~~~~~~~ 149 (281)
T PF10111_consen 76 RAKARNIGAK---YARGDYLIFLDADCIPSPDFIEKLLNHVKKLDKNPN-AFLVYPCLYLSEEGSE--KFYSQFKNLWDH 149 (281)
T ss_pred HHHHHHHHHH---HcCCCEEEEEcCCeeeCHHHHHHHHHHHHHHhcCCC-ceEEEeeeeccchhhH--HHhhcchhcchH
Confidence 9999999999 68999999999999999999999999 5654443 3333344444433221 111110 01111
Q ss_pred H-HHHhhc--cccccccccccceEEEEeeeehhcCCCCCCC---chhHHHHHHHHHHcCCeEEEecCceeeec
Q 005700 372 E-VEQQVN--GVFINFFGFNGTAGVWRIKALEDSGGWMERT---TVEDMDIAVRAHLRGWKFIFLNDVECQCE 438 (682)
Q Consensus 372 ~-~~~~~~--~~~~~~~~~~G~~~~~Rr~al~~iGG~~~~~---~~ED~~l~~rl~~~G~ki~y~~~a~~~~e 438 (682)
. .+.... ..........|++++++|+.+.++|||++.. ..||.|++.|+.+.|.++...++..+++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~s~~~~i~r~~f~~iGGfDE~f~G~G~ED~D~~~RL~~~~~~~~~~~~~~~~~~ 222 (281)
T PF10111_consen 150 EFLESFISGKNSLWEFIAFASSCFLINREDFLEIGGFDERFRGWGYEDIDFGYRLKKAGYKFKRSPDYLVYHS 222 (281)
T ss_pred HHHHHHhhccccccccccccceEEEEEHHHHHHhCCCCccccCCCcchHHHHHHHHHcCCcEecChHHhcccc
Confidence 1 111111 1111222356799999999999999999874 46999999999999999999999887654
No 66
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=99.66 E-value=2.7e-16 Score=161.54 Aligned_cols=232 Identities=17% Similarity=0.219 Sum_probs=182.7
Q ss_pred CCCCeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcch
Q 005700 218 GFFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKA 297 (682)
Q Consensus 218 ~~~P~VsVvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~Ka 297 (682)
..+|.|||+.|...-++.+...+++....+||. +|+..+-+++||...++++.+..+++.-..++..--....-+.|.
T Consensus 82 ~~LPgVSiikPl~G~d~nl~~Nlesffts~Y~~--~ElLfcv~s~eDpAi~vv~~Ll~kyp~VdAklf~gG~~vg~npKI 159 (431)
T KOG2547|consen 82 PKLPGVSIIKPLKGVDPNLYHNLESFFTSQYHK--YELLFCVESSEDPAIEVVERLLKKYPNVDAKLFFGGEKVGLNPKI 159 (431)
T ss_pred CCCCCceEEeecccCCchhHHhHHHHHhhccCc--eEEEEEEccCCCcHHHHHHHHHhhCCCcceEEEEcccccccChhh
Confidence 369999999999999999999999999999996 445555556666777899999999987777776654444555799
Q ss_pred hhHHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHhhhhhhhhhhHHHHhh
Q 005700 298 GNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQV 377 (682)
Q Consensus 298 gaLn~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~~~~~~~~~~~~~~ 377 (682)
+|+.-|.+ .+++|+|++.|+|..+.||.+.+++..|+++.+++.|++...+...+.--.+ ...+.+-..+. .-..
T Consensus 160 nN~mpgy~---~a~ydlvlisDsgI~m~pdtildm~t~M~shekmalvtq~py~~dr~Gf~at-le~~~fgTsh~-r~yl 234 (431)
T KOG2547|consen 160 NNMMPGYR---AAKYDLVLISDSGIFMKPDTILDMATTMMSHEKMALVTQTPYCKDRQGFDAT-LEQVYFGTSHP-RIYL 234 (431)
T ss_pred hccCHHHH---HhcCCEEEEecCCeeecCchHHHHHHhhhcccceeeecCCceeeccccchhh-hhheeeccCCc-eEEE
Confidence 99999998 7899999999999999999999999999987899999887766655432222 11111111111 1112
Q ss_pred ccccccccccccceEEEEeeeehhcCCCCC--CCchhHHHHHHHHHHcCCeEEEecCceeeeccCcCHHHHHHHhHhhhc
Q 005700 378 NGVFINFFGFNGTAGVWRIKALEDSGGWME--RTTVEDMDIAVRAHLRGWKFIFLNDVECQCELPESYEAYRKQQHRWHS 455 (682)
Q Consensus 378 ~~~~~~~~~~~G~~~~~Rr~al~~iGG~~~--~~~~ED~~l~~rl~~~G~ki~y~~~a~~~~e~p~t~~~~~~Qr~RW~~ 455 (682)
.+...++.|.+|-.++.|++++++.||... ..+.||...+..+..+|||..+...+.-.+.+..+...+.+|-.||..
T Consensus 235 ~~n~~~~~c~tgms~~mrK~~ld~~ggi~~f~~yLaedyFaaksllSRG~ksaist~palQnSas~~mssf~~Ri~rwvk 314 (431)
T KOG2547|consen 235 SGNVLGFNCSTGMSSMMRKEALDECGGISAFGGYLAEDYFAAKSLLSRGWKSAISTHPALQNSASVTMSSFLDRIIRWVK 314 (431)
T ss_pred ccccccccccccHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhHHHHHHHHHHHhhh
Confidence 334446667899999999999999999855 367899999999999999999998888777778888999999999975
Q ss_pred h
Q 005700 456 G 456 (682)
Q Consensus 456 G 456 (682)
=
T Consensus 315 L 315 (431)
T KOG2547|consen 315 L 315 (431)
T ss_pred h
Confidence 4
No 67
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=99.66 E-value=4.4e-14 Score=151.14 Aligned_cols=193 Identities=16% Similarity=0.173 Sum_probs=128.2
Q ss_pred CCeEEEEeecCCchHHHHHHHHHHHc---CCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcc
Q 005700 220 FPMVLVQIPMCNEKEVYQQSIAAVCN---LDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYK 296 (682)
Q Consensus 220 ~P~VsVvIP~yNE~~~l~~tL~Sl~~---qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~K 296 (682)
.+++||+||+|||++.+.++++++.+ +..+ .++|+|+||||+|.|.+++++..+ ..+.+++......+.| |
T Consensus 5 ~~~vSVVIP~yNE~~~i~~~l~~l~~~~~~~~~--~~EIIvVDDgS~D~T~~il~~~~~---~~~~~v~~i~~~~n~G-~ 78 (325)
T PRK10714 5 IKKVSVVIPVYNEQESLPELIRRTTAACESLGK--EYEILLIDDGSSDNSAEMLVEAAQ---APDSHIVAILLNRNYG-Q 78 (325)
T ss_pred CCeEEEEEcccCchhhHHHHHHHHHHHHHhCCC--CEEEEEEeCCCCCcHHHHHHHHHh---hcCCcEEEEEeCCCCC-H
Confidence 56799999999999999999887753 3332 578999999999999998876443 2345555544444444 9
Q ss_pred hhhHHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHhhhhhhhhhhHHHHh
Q 005700 297 AGNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQ 376 (682)
Q Consensus 297 agaLn~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~~~~~~~~~~~~~ 376 (682)
++|++.|++ .+++|+++++|||.+.+|+.+.+++..++++ .++|.+... +...+++.+.....+. ......
T Consensus 79 ~~A~~~G~~---~A~gd~vv~~DaD~q~~p~~i~~l~~~~~~~--~DvV~~~r~--~~~~~~~r~~~s~~~~--~l~~~~ 149 (325)
T PRK10714 79 HSAIMAGFS---HVTGDLIITLDADLQNPPEEIPRLVAKADEG--YDVVGTVRQ--NRQDSWFRKTASKMIN--RLIQRT 149 (325)
T ss_pred HHHHHHHHH---hCCCCEEEEECCCCCCCHHHHHHHHHHHHhh--CCEEEEEEc--CCCCcHHHHHHHHHHH--HHHHHH
Confidence 999999999 5799999999999999999999999999743 456665432 3334444443322111 111111
Q ss_pred hccccccccccccceEEEEeeeehhcCCCCCCCchhHHHHHHHHHHcCCeEEEecCce
Q 005700 377 VNGVFINFFGFNGTAGVWRIKALEDSGGWMERTTVEDMDIAVRAHLRGWKFIFLNDVE 434 (682)
Q Consensus 377 ~~~~~~~~~~~~G~~~~~Rr~al~~iGG~~~~~~~ED~~l~~rl~~~G~ki~y~~~a~ 434 (682)
.+....+ ..+..-++||++++++-...+. +..+...+...|+++..+|-..
T Consensus 150 ~g~~~~d---~~~gfr~~~r~~~~~l~~~~~~----~~~~~~l~~~~g~~i~evpv~~ 200 (325)
T PRK10714 150 TGKAMGD---YGCMLRAYRRHIVDAMLHCHER----STFIPILANTFARRAIEIPVHH 200 (325)
T ss_pred cCCCCCC---CCcCeEEEcHHHHHHHHHCCCC----ccHHHHHHHHcCCCEEEEEeEe
Confidence 1111111 1222457999999987433332 1233455667799988877543
No 68
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=99.66 E-value=1.3e-15 Score=161.18 Aligned_cols=196 Identities=16% Similarity=0.104 Sum_probs=129.7
Q ss_pred CCCCeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEE----EeccCCC
Q 005700 218 GFFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVY----RHRILRD 293 (682)
Q Consensus 218 ~~~P~VsVvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~----~~r~~~~ 293 (682)
...|+|||+||+|||++.|.++|+++.+|.++....+|+|+||+|+|.|.+++++. +.++.. ......+
T Consensus 28 ~~~~~vSVVIPayNee~~I~~~l~sl~~~~~~~~~~EIIVVDDgStD~T~~ia~~~-------~~~v~~~~~~~~~~~~n 100 (306)
T PRK13915 28 KAGRTVSVVLPALNEEETVGKVVDSIRPLLMEPLVDELIVIDSGSTDATAERAAAA-------GARVVSREEILPELPPR 100 (306)
T ss_pred cCCCCEEEEEecCCcHHHHHHHHHHHHHHhccCCCcEEEEEeCCCccHHHHHHHHh-------cchhhcchhhhhccccC
Confidence 45789999999999999999999999988652224579999999999999887643 222111 1111223
Q ss_pred CcchhhHHHHHhhcccCCccEEEEEcCCCC-CCHHHHHHHHHHhhcCCCeeEEEeeeEeec--------CCCChHHHhhh
Q 005700 294 GYKAGNLKSAMNCSYVKDYEFVAIFDADFQ-PNPDFLRRTVPHFKDNEELGLVQARWSFVN--------KDENLLTRLQD 364 (682)
Q Consensus 294 g~KagaLn~gl~~~~~a~~d~Vl~lDaD~~-~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n--------~~~~l~t~~~~ 364 (682)
.+|+.|+|.|++ .+++|+|+++|+|+. ++|+++.+++..+..+|++++|.+...... ......++...
T Consensus 101 ~Gkg~A~~~g~~---~a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g~~~r~~~~~~~~~~~~~gr~~~~~~ 177 (306)
T PRK13915 101 PGKGEALWRSLA---ATTGDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKAFYRRPLRVSGGVDATGGGRVTELVA 177 (306)
T ss_pred CCHHHHHHHHHH---hcCCCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEEeccccccccccCcCCCCchHHHHH
Confidence 349999999998 678999999999996 899999999999976789999988532110 00111111110
Q ss_pred hhhhhhhHHHHhhccccccccccccceEEEEeeeehhcCCCCCCCchhHHHHHHHHHH-cCC-eEEEec
Q 005700 365 INLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEDSGGWMERTTVEDMDIAVRAHL-RGW-KFIFLN 431 (682)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~iGG~~~~~~~ED~~l~~rl~~-~G~-ki~y~~ 431 (682)
... +.. .......-.-+.+| ..++||++++++. +..+ .+.|.++...+.. .|. ++..++
T Consensus 178 ~~l---~~~--~~~~l~~i~dp~sG-~~a~rr~~l~~l~-~~~~-yg~e~~~l~~~~~~~g~~~i~~V~ 238 (306)
T PRK13915 178 RPL---LNL--LRPELAGFVQPLGG-EYAGRRELLESLP-FVPG-YGVEIGLLIDTLDRLGLDAIAQVD 238 (306)
T ss_pred HHH---HHH--HHHhhhcccCcchH-hHHHHHHHHHhCC-CCCC-CeehHHHHHHHHHHhCcCceEEEE
Confidence 000 000 00000000111344 4689999999984 5443 5668888888764 576 666555
No 69
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=99.64 E-value=2.2e-15 Score=146.90 Aligned_cols=177 Identities=16% Similarity=0.165 Sum_probs=122.7
Q ss_pred EEeecCCchHHHHHHHHHHHcCCCC-CCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHH
Q 005700 225 VQIPMCNEKEVYQQSIAAVCNLDWP-KSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSA 303 (682)
Q Consensus 225 VvIP~yNE~~~l~~tL~Sl~~qdYP-~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~g 303 (682)
|+||+|||++.+.++++++.++... ...++|+|+||+|+|.+.+.+++... ...++.++...++.| +++|+|.|
T Consensus 1 viIp~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~----~~~~i~~i~~~~n~G-~~~a~n~g 75 (181)
T cd04187 1 IVVPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILRELAA----RDPRVKVIRLSRNFG-QQAALLAG 75 (181)
T ss_pred CEEeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHHHHHHh----hCCCEEEEEecCCCC-cHHHHHHH
Confidence 6899999999999998888664321 22467999999999999888776543 233566665555555 99999999
Q ss_pred HhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHhhhhhhhhhhHHHHhhcccccc
Q 005700 304 MNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGVFIN 383 (682)
Q Consensus 304 l~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~~~~~~~~~~~~~~~~~~~~ 383 (682)
++ .+++|+|+++|+|+.++|+++.+++..+. ++.++|.+.....+ .+...+.....+.. ....... ..
T Consensus 76 ~~---~a~~d~i~~~D~D~~~~~~~l~~l~~~~~--~~~~~v~g~~~~~~--~~~~~~~~~~~~~~---~~~~~~~--~~ 143 (181)
T cd04187 76 LD---HARGDAVITMDADLQDPPELIPEMLAKWE--EGYDVVYGVRKNRK--ESWLKRLTSKLFYR---LINKLSG--VD 143 (181)
T ss_pred HH---hcCCCEEEEEeCCCCCCHHHHHHHHHHHh--CCCcEEEEEecCCc--chHHHHHHHHHHHH---HHHHHcC--CC
Confidence 99 57899999999999999999999999864 44566766654433 34333332211111 1111111 12
Q ss_pred ccccccceEEEEeeeehhcCCCCCCC-chhHHHHHH
Q 005700 384 FFGFNGTAGVWRIKALEDSGGWMERT-TVEDMDIAV 418 (682)
Q Consensus 384 ~~~~~G~~~~~Rr~al~~iGG~~~~~-~~ED~~l~~ 418 (682)
.....|+..++||++++++|+|++.. ..+|.+.++
T Consensus 144 ~~~~~~~~~~~~r~~~~~i~~~d~~~~~~~~~~~~~ 179 (181)
T cd04187 144 IPDNGGDFRLMDRKVVDALLLLPERHRFLRGLIAWV 179 (181)
T ss_pred CCCCCCCEEEEcHHHHHHHHhcCCCCccHHHHHHHh
Confidence 22256778899999999999998763 456666554
No 70
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=99.56 E-value=3.6e-14 Score=131.68 Aligned_cols=153 Identities=22% Similarity=0.272 Sum_probs=124.0
Q ss_pred EEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHH
Q 005700 225 VQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAM 304 (682)
Q Consensus 225 VvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl 304 (682)
|+||++|+.+.+..+++|+.+++++. .+|+++||++++.+.+.+++... ......+.....+ +++++++|.++
T Consensus 1 iii~~~~~~~~l~~~l~s~~~~~~~~--~~i~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~g~~~~~~~~~ 73 (156)
T cd00761 1 VIIPAYNEEPYLERCLESLLAQTYPN--FEVIVVDDGSTDGTLEILEEYAK----KDPRVIRVINEEN-QGLAAARNAGL 73 (156)
T ss_pred CEEeecCcHHHHHHHHHHHHhCCccc--eEEEEEeCCCCccHHHHHHHHHh----cCCCeEEEEecCC-CChHHHHHHHH
Confidence 58999999999999999999999864 56889999999988887765432 1233344434444 45999999999
Q ss_pred hhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHhhhhhhhhhhHHHHhhccccccc
Q 005700 305 NCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGVFINF 384 (682)
Q Consensus 305 ~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~~~~~~~~~~~~~~~~~~~~~ 384 (682)
+ ..++|+++++|+|..++|+++..++..+..+++.+++++.
T Consensus 74 ~---~~~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~~v~~~------------------------------------ 114 (156)
T cd00761 74 K---AARGEYILFLDADDLLLPDWLERLVAELLADPEADAVGGP------------------------------------ 114 (156)
T ss_pred H---HhcCCEEEEECCCCccCccHHHHHHHHHhcCCCceEEecc------------------------------------
Confidence 9 4589999999999999999999986666667888888775
Q ss_pred cccccceEEEEeeeehhcCCCCCCCc--hhHHHHHHHHHHcCCeEE
Q 005700 385 FGFNGTAGVWRIKALEDSGGWMERTT--VEDMDIAVRAHLRGWKFI 428 (682)
Q Consensus 385 ~~~~G~~~~~Rr~al~~iGG~~~~~~--~ED~~l~~rl~~~G~ki~ 428 (682)
++++++++.++++|++++... .||.++..++...|++..
T Consensus 115 -----~~~~~~~~~~~~~~~~~~~~~~~~ed~~~~~~~~~~g~~~~ 155 (156)
T cd00761 115 -----GNLLFRRELLEEIGGFDEALLSGEEDDDFLLRLLRGGKVAF 155 (156)
T ss_pred -----chheeeHHHHHHhCCcchHhcCCcchHHHHHHHHhhccccc
Confidence 578899999999999877644 599999999999887654
No 71
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=99.54 E-value=7.5e-14 Score=131.00 Aligned_cols=203 Identities=17% Similarity=0.173 Sum_probs=137.0
Q ss_pred CeEEEEeecCCchHHHHHHHHHHHcC-CCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhh
Q 005700 221 PMVLVQIPMCNEKEVYQQSIAAVCNL-DWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGN 299 (682)
Q Consensus 221 P~VsVvIP~yNE~~~l~~tL~Sl~~q-dYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~Kaga 299 (682)
++-||++|+|||.+.+.-++.-+... +-...+.+|+++||+|.|.|++.++++.+.+.. .++....|.+..| -..|
T Consensus 3 ~kYsvilPtYnEk~Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~--d~i~l~pR~~klG-LgtA 79 (238)
T KOG2978|consen 3 IKYSVILPTYNEKENLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYGE--DNILLKPRTKKLG-LGTA 79 (238)
T ss_pred cceeEEeccccCCCCCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhCC--CcEEEEeccCccc-chHH
Confidence 56899999999997766444333321 111346789999999999999999988776554 4555556666555 6778
Q ss_pred HHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCC---hHHHhhhhhhhhhhHHHHh
Q 005700 300 LKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDEN---LLTRLQDINLSFHFEVEQQ 376 (682)
Q Consensus 300 Ln~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~---l~t~~~~~~~~~~~~~~~~ 376 (682)
.-.|++ .++++|++++|||-..+|.++.++....++ .+.++|.|....-+..-. .-.+......+ ...+.
T Consensus 80 y~hgl~---~a~g~fiviMDaDlsHhPk~ipe~i~lq~~-~~~div~GTRYa~~ggV~gW~mkRk~IS~gAn---~la~~ 152 (238)
T KOG2978|consen 80 YIHGLK---HATGDFIVIMDADLSHHPKFIPEFIRLQKE-GNYDIVLGTRYAGGGGVYGWDMKRKIISRGAN---FLARI 152 (238)
T ss_pred HHhhhh---hccCCeEEEEeCccCCCchhHHHHHHHhhc-cCcceeeeeeEcCCCceecchhhHHHHhhhhH---HHHHH
Confidence 888998 589999999999999999999999987764 677888886544333211 11111110000 01111
Q ss_pred hccccccccccccceEEEEeeeehhcC-CCCCCCchhHHHHHHHHHHcCCeEEEecCcee
Q 005700 377 VNGVFINFFGFNGTAGVWRIKALEDSG-GWMERTTVEDMDIAVRAHLRGWKFIFLNDVEC 435 (682)
Q Consensus 377 ~~~~~~~~~~~~G~~~~~Rr~al~~iG-G~~~~~~~ED~~l~~rl~~~G~ki~y~~~a~~ 435 (682)
.-. .++..++|++-++|+++++..- .-......--+++-.|+.++||.+.-+|-+.+
T Consensus 153 ll~--~~~sdltGsFrLykk~vl~~li~e~vSkGyvfqmEll~ra~~~~y~IgEvPitFv 210 (238)
T KOG2978|consen 153 LLN--PGVSDLTGSFRLYKKEVLEKLIEESVSKGYVFQMELLARARQHGYTIGEVPITFV 210 (238)
T ss_pred hcc--CCCccCcceeeeehHHHHHhhHHHhhccchhhhHHHHHhccccCceEeecceEEE
Confidence 111 2344589999999999988751 00111234568999999999999988887663
No 72
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=99.39 E-value=5.1e-12 Score=128.48 Aligned_cols=103 Identities=19% Similarity=0.207 Sum_probs=86.7
Q ss_pred eEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHH
Q 005700 222 MVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLK 301 (682)
Q Consensus 222 ~VsVvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn 301 (682)
+|||+||+|||++.+++||+|+..|. + +|+|+||+|+|.|.++++ ..++++... .+ ++.+.+.|
T Consensus 1 ~isvii~~~Ne~~~l~~~l~sl~~~~---~--eiivvD~gStD~t~~i~~-------~~~~~v~~~---~~-~g~~~~~n 64 (229)
T cd02511 1 TLSVVIITKNEERNIERCLESVKWAV---D--EIIVVDSGSTDRTVEIAK-------EYGAKVYQR---WW-DGFGAQRN 64 (229)
T ss_pred CEEEEEEeCCcHHHHHHHHHHHhccc---C--EEEEEeCCCCccHHHHHH-------HcCCEEEEC---CC-CChHHHHH
Confidence 48999999999999999999998873 1 589999999999998876 345665533 33 44899999
Q ss_pred HHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCee
Q 005700 302 SAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELG 343 (682)
Q Consensus 302 ~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg 343 (682)
.|++ .+++|+|+++|+|..++|++++++...+.++|..+
T Consensus 65 ~~~~---~a~~d~vl~lDaD~~~~~~~~~~l~~~~~~~~~~~ 103 (229)
T cd02511 65 FALE---LATNDWVLSLDADERLTPELADEILALLATDDYDG 103 (229)
T ss_pred HHHH---hCCCCEEEEEeCCcCcCHHHHHHHHHHHhCCCCcE
Confidence 9999 68899999999999999999999999998766533
No 73
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.31 E-value=1.3e-11 Score=119.68 Aligned_cols=106 Identities=22% Similarity=0.238 Sum_probs=85.9
Q ss_pred CCeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhh
Q 005700 220 FPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGN 299 (682)
Q Consensus 220 ~P~VsVvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~Kaga 299 (682)
.|.+||+||+||+++.+.++|+|+.+|+|++ .+|+|+||||+|.+.+++++..... .++.......+ +++..+
T Consensus 2 ~~~~siiip~~n~~~~l~~~l~s~~~q~~~~--~eiivvddgs~d~t~~~~~~~~~~~----~~~~~~~~~~~-~g~~~~ 74 (291)
T COG0463 2 MPKVSVVIPTYNEEEYLPEALESLLNQTYKD--FEIIVVDDGSTDGTTEIAIEYGAKD----VRVIRLINERN-GGLGAA 74 (291)
T ss_pred CccEEEEEeccchhhhHHHHHHHHHhhhhcc--eEEEEEeCCCCCChHHHHHHHhhhc----ceEEEeecccC-CChHHH
Confidence 5789999999999999999999999999987 5689999999999999888654421 23333333344 449999
Q ss_pred HHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHh
Q 005700 300 LKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHF 336 (682)
Q Consensus 300 Ln~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~ 336 (682)
+|.++. .+.+|+++++|+|.. +++.+..+....
T Consensus 75 ~~~~~~---~~~~~~~~~~d~d~~-~~~~~~~~~~~~ 107 (291)
T COG0463 75 RNAGLE---YARGDYIVFLDADDQ-HPPELIPLVAAG 107 (291)
T ss_pred HHhhHH---hccCCEEEEEccCCC-CCHHHHHHHHHh
Confidence 999999 567799999999999 888888744444
No 74
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=99.03 E-value=1.1e-08 Score=102.81 Aligned_cols=210 Identities=14% Similarity=0.091 Sum_probs=128.2
Q ss_pred eEEEEeecCCchH----HHHHHHHHHHc--CCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCc
Q 005700 222 MVLVQIPMCNEKE----VYQQSIAAVCN--LDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGY 295 (682)
Q Consensus 222 ~VsVvIP~yNE~~----~l~~tL~Sl~~--qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~ 295 (682)
-.||+||+|||+. .+.+|++++.+ ..-|+.+++|+||||||.|+|.+++-+.+.++....+++. .-..|.|
T Consensus 68 ~lsVIVpaynE~~ri~~mldeav~~le~ry~~~~~F~~eiiVvddgs~d~T~~~a~k~s~K~~~d~irV~--~l~~nrg- 144 (323)
T KOG2977|consen 68 YLSVIVPAYNEEGRIGAMLDEAVDYLEKRYLSDKSFTYEIIVVDDGSTDSTVEVALKFSRKLGDDNIRVI--KLKKNRG- 144 (323)
T ss_pred eeEEEEecCCcccchHHHHHHHHHHHHHHhccCCCCceeEEEeCCCCchhHHHHHHHHHHHcCcceEEEe--ehhccCC-
Confidence 5899999999984 45566665544 1224468899999999999999998888765554444443 4445566
Q ss_pred chhhHHHHHhhcccCCccEEEEEcCCC---CCCHHHHHHHHHHhhc-CCCeeEEEeeeEeecCCCChHHHhh-h--hhhh
Q 005700 296 KAGNLKSAMNCSYVKDYEFVAIFDADF---QPNPDFLRRTVPHFKD-NEELGLVQARWSFVNKDENLLTRLQ-D--INLS 368 (682)
Q Consensus 296 KagaLn~gl~~~~~a~~d~Vl~lDaD~---~~~pd~L~~lv~~~~~-~p~vg~Vqg~~~~~n~~~~l~t~~~-~--~~~~ 368 (682)
|+||...|+. .+.|+++++.|||. ..|-..|++.+..... .++-++++|........+....+-. . +-+.
T Consensus 145 KGgAvR~g~l---~~rG~~ilfadAdGaTkf~d~ekLe~al~~~~~p~~r~~va~GsrahLe~~~a~a~rs~~r~iLM~g 221 (323)
T KOG2977|consen 145 KGGAVRKGML---SSRGQKILFADADGATKFADLEKLEKALNDKAGPGPRDDVACGSRAHLENTEAVAKRSVIRNILMYG 221 (323)
T ss_pred CCcceehhhH---hccCceEEEEcCCCCccCCCHHHHHHHHHhhcCCCCCCceeecCHHHhhccHHHHHHhHhhHHHHHH
Confidence 9999999998 57999999999997 3466778888876663 3344444444332222122222211 1 1122
Q ss_pred hhhHHHHhhccccccccccccceEEEEeeeehhcCCCCCC-CchhHHHHHHHHHHcCCeEEEecCceeeeccCcC
Q 005700 369 FHFEVEQQVNGVFINFFGFNGTAGVWRIKALEDSGGWMER-TTVEDMDIAVRAHLRGWKFIFLNDVECQCELPES 442 (682)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~iGG~~~~-~~~ED~~l~~rl~~~G~ki~y~~~a~~~~e~p~t 442 (682)
+|..+.-......+.. -+| +-+|.|++.+.+-.|..- .-.-|.++-..+...+-.+.-++ .-++|.+.|
T Consensus 222 FH~lv~~~a~rsI~DT--Qcg-fklftR~aa~~if~~lh~e~W~fdvEll~La~~~~ipi~ei~--v~w~EIdgS 291 (323)
T KOG2977|consen 222 FHKLVWIFAIRSIRDT--QCG-FKLFTRAAARRIFPWLHVERWAFDVELLYLAKRFTIPIKEIP--VEWTEIDGS 291 (323)
T ss_pred HHHHHHHHhcCccccc--chh-HHHhHHHHHHhhcchhheeeeeccHHHHHHHHHcCCCcEEee--eEEEEcCCc
Confidence 3333222222222222 123 456777777776444322 22458888888888777666554 345555544
No 75
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=98.98 E-value=4e-09 Score=111.89 Aligned_cols=176 Identities=19% Similarity=0.248 Sum_probs=113.1
Q ss_pred EEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEec--cCCCC------
Q 005700 223 VLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHR--ILRDG------ 294 (682)
Q Consensus 223 VsVvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r--~~~~g------ 294 (682)
+.|+|.+||..+.++++|+|+++|.......+|+|.+||+++++.+.++... ..++++.... ..+.|
T Consensus 2 ~PVlv~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~~~~-----~~i~~i~~~~~~~~~~~~~~~~~ 76 (334)
T cd02514 2 IPVLVIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKSFG-----DGVTHIQHPPISIKNVNPPHKFQ 76 (334)
T ss_pred cCEEEEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHHhhc-----cccEEEEcccccccccCcccccc
Confidence 4589999999999999999999985223346689999999888776665321 1233221110 01111
Q ss_pred ---cchh----hHHHHHhhcccCCccEEEEEcCCCCCCHH---HHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHhhh
Q 005700 295 ---YKAG----NLKSAMNCSYVKDYEFVAIFDADFQPNPD---FLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQD 364 (682)
Q Consensus 295 ---~Kag----aLn~gl~~~~~a~~d~Vl~lDaD~~~~pd---~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~ 364 (682)
+-+. ++|.++. ..++++++++|+|+.+.|| +++.+++.+++|+.+..|++... |........
T Consensus 77 ~y~~ia~hyk~aln~vF~---~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~Nd--nG~~~~~~~--- 148 (334)
T cd02514 77 GYYRIARHYKWALTQTFN---LFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAWND--NGKEHFVDD--- 148 (334)
T ss_pred hhhHHHHHHHHHHHHHHH---hcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEeecc--CCcccccCC---
Confidence 0122 6777776 4579999999999999999 55888888888999999998531 211110000
Q ss_pred hhhhhhhHHHHhhccccccccccccceEEEEeeeehhcC-CCCCCCchhHHHHHHHH--HHcCCeE
Q 005700 365 INLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEDSG-GWMERTTVEDMDIAVRA--HLRGWKF 427 (682)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~iG-G~~~~~~~ED~~l~~rl--~~~G~ki 427 (682)
. ..... ....++|.+-+.+|+++++.. .|+. -|+|.++|. .++|-.+
T Consensus 149 -------~----~~~ly-rs~ff~glGWml~r~~W~e~~~~wp~----~~WD~w~R~~~~rkgr~c 198 (334)
T cd02514 149 -------T----PSLLY-RTDFFPGLGWMLTRKLWKELEPKWPK----AFWDDWMRLPEQRKGREC 198 (334)
T ss_pred -------C----cceEE-EecCCCchHHHHHHHHHHHhCCCCCC----CChHHhhcchhhhcCCcc
Confidence 0 00111 111267777788888887762 3433 488888886 5556444
No 76
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=9.6e-10 Score=122.73 Aligned_cols=211 Identities=15% Similarity=0.145 Sum_probs=150.3
Q ss_pred CCCCeEEEEeecCCch-HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhH-HHHHHHHHHHHhhcCCeEEEEeccCCCCc
Q 005700 218 GFFPMVLVQIPMCNEK-EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTA-QTLIKEEVLKWQEAGANIVYRHRILRDGY 295 (682)
Q Consensus 218 ~~~P~VsVvIP~yNE~-~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t-~~~l~~~~~~~~~~~v~v~~~~r~~~~g~ 295 (682)
+.+|.+||+|+-+||. .++.++|-|+.+.+-+.---+|++|||+|+... .+.++++++++.. +.+++.++|.|
T Consensus 139 ~~Lp~~Svii~f~nE~~s~llRtv~Svi~rtp~~lLkEIiLVdD~S~~~~l~~~Ld~y~k~~~~----v~i~r~~~R~G- 213 (578)
T KOG3736|consen 139 DKLPTTSVIIIFHNEAWSTLLRTVHSVINRTPPYLLKEIILVDDFSDRDHLKDKLEEYVKRFSK----VRILRTKKREG- 213 (578)
T ss_pred cccCCCceEEEEecCCCcchhheEEeehccCChhHeEEEEEeecCcchhhhhhhhHHHHhhhcc----eeEEeecchhh-
Confidence 5689999999999998 899999999998764443447999999887665 5556666554322 55666677777
Q ss_pred chhhHHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHH-----hhhhhhhhh
Q 005700 296 KAGNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTR-----LQDINLSFH 370 (682)
Q Consensus 296 KagaLn~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~-----~~~~~~~~~ 370 (682)
+..|...|.+ .+.+|++.|+||.+.+..+||+-++..+..+. -.+|+......+.+.-.+.. ...+++..+
T Consensus 214 LIrARl~GA~---~A~geVL~FLDsHcE~n~gWLePLL~~I~~~r-~tvv~PvID~Id~~tf~y~~~~~~~rGgFdW~l~ 289 (578)
T KOG3736|consen 214 LIRARLLGAS---MATGEVLTFLDSHCEVNVGWLEPLLARIAEDR-KTVVCPVIDVIDDNTFEYEKQSELMRGGFDWELT 289 (578)
T ss_pred hHHHHhhhhh---hhhchheeeeecceeEecCcchHHHHHhhhcC-ceeecceEEeecCcCceecccCccceeeeeccee
Confidence 8888888888 79999999999999999999999999998754 34555554444432211111 001111111
Q ss_pred hH----H--HHhh-cc--ccccccccccceEEEEeeeehhcCCCCCCC---chhHHHHHHHHHHcCCeEEEecCceeee
Q 005700 371 FE----V--EQQV-NG--VFINFFGFNGTAGVWRIKALEDSGGWMERT---TVEDMDIAVRAHLRGWKFIFLNDVECQC 437 (682)
Q Consensus 371 ~~----~--~~~~-~~--~~~~~~~~~G~~~~~Rr~al~~iGG~~~~~---~~ED~~l~~rl~~~G~ki~y~~~a~~~~ 437 (682)
+. . +..- .. .-.......|..+++.|+-+.++|+|++.. -+|..++++|+.+-|-++..+|-..+-+
T Consensus 290 f~w~~lP~~~~~~~~~~t~PirsPtMaGglFAI~r~yF~eiG~yD~gMdiwGGENlElSfrvWqCGG~lei~PCSrVGH 368 (578)
T KOG3736|consen 290 FKWERLPLPEEKRRELPTDPIRSPTMAGGLFAIDRKYFGELGSYDEGMDIWGGENLELSFRVWQCGGRLEIVPCSRVGH 368 (578)
T ss_pred EEeccCCccHhhcccCCCCCcCCcccCCceEEeeHHHHhhccCccccccccChhhceeeEEEeccCCeEEecCccceee
Confidence 11 0 1111 11 111223478999999999999999999874 3699999999999999999999887544
No 77
>KOG3738 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=2.5e-09 Score=111.17 Aligned_cols=230 Identities=17% Similarity=0.144 Sum_probs=154.6
Q ss_pred CCCCeEEEEeecCCch-HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhH-HHHHHHHHHHHhhcCCeEEEEeccCCCCc
Q 005700 218 GFFPMVLVQIPMCNEK-EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTA-QTLIKEEVLKWQEAGANIVYRHRILRDGY 295 (682)
Q Consensus 218 ~~~P~VsVvIP~yNE~-~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t-~~~l~~~~~~~~~~~v~v~~~~r~~~~g~ 295 (682)
.++|..||||+-+||+ ..+.+||.|+++++=++.-.+|++|||.|+|.. ...+. ++ .++...++..|.|
T Consensus 121 ~dlp~TsviITfHNEARS~LLRTv~SvlnrsP~~li~EiILVDD~S~Dped~~~L~----ri----~kvr~LRN~~ReG- 191 (559)
T KOG3738|consen 121 VDLPPTSVIITFHNEARSTLLRTVVSVLNRSPEHLIHEIILVDDFSQDPEDGKLLK----RI----PKVRVLRNNEREG- 191 (559)
T ss_pred cCCCCceEEEEeccHHHHHHHHHHHHHHcCChHHhhheeEEecCCCCChHHHHHHh----hh----heeeeecccchhh-
Confidence 5789999999999998 899999999999874444457999999776543 22222 22 2455555555555
Q ss_pred chhhHHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCC-ChHHHhh----hhhhhhh
Q 005700 296 KAGNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDE-NLLTRLQ----DINLSFH 370 (682)
Q Consensus 296 KagaLn~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~-~l~t~~~----~~~~~~~ 370 (682)
-....+.|.. .+.+.++.|+|+.+.++.+||+-++.....|+. .+|+......|.+. +...... .+.+..+
T Consensus 192 LirSRvrGAd---vA~a~vltFLDSHcEvN~~WLePLL~Rvaed~t-rvVsPiiDvIn~dnf~Y~~asadLrGGFDWsLh 267 (559)
T KOG3738|consen 192 LIRSRVRGAD---VAQATVLTFLDSHCEVNEGWLEPLLERVAEDTT-RVVSPIIDVINLDNFSYVGASADLRGGFDWSLH 267 (559)
T ss_pred hhhhhccccc---cccceEEEEEecceeecchhhHHHHHHHhhccc-ceeecccccccccccccccchhhhcCCcceEEE
Confidence 4445556666 689999999999999999999999999987554 56777777777653 1111111 1222333
Q ss_pred hHHH-----Hhhcc----ccccccccccceEEEEeeeehhcCCCCCCC---chhHHHHHHHHHHcCCeEEEecCceeee-
Q 005700 371 FEVE-----QQVNG----VFINFFGFNGTAGVWRIKALEDSGGWMERT---TVEDMDIAVRAHLRGWKFIFLNDVECQC- 437 (682)
Q Consensus 371 ~~~~-----~~~~~----~~~~~~~~~G~~~~~Rr~al~~iGG~~~~~---~~ED~~l~~rl~~~G~ki~y~~~a~~~~- 437 (682)
|.-+ +.... .-.....+.|...++.++-+.+.|.|+... -+|..++++|+...|-.+..+|-..+-+
T Consensus 268 F~We~~~~eqr~sr~~Pt~PirtP~iAGGlfvidk~wF~~LGkyd~~mdiWGGEn~ElsfrvW~CGGslEIvPCSRVGHV 347 (559)
T KOG3738|consen 268 FKWEQMQLEQRESRADPTAPIRTPAIAGGLFVIDKEWFNELGKYDMDMDIWGGENLELSFRVWQCGGSLEIVPCSRVGHV 347 (559)
T ss_pred EEehhcCHHHHhhccCCCCcccCccccceeEEecHHHHHHhcccCccccccCCcceEEEEEEEeeCCeeEEEeccchhhh
Confidence 3221 11111 011223378999999999999999887653 4799999999999999999988776322
Q ss_pred --------ccCcCHHHHHHHhHhhhchhhHH
Q 005700 438 --------ELPESYEAYRKQQHRWHSGPMQL 460 (682)
Q Consensus 438 --------e~p~t~~~~~~Qr~RW~~G~~~~ 460 (682)
-.+.+-..|.+.-+|=+.-.+.-
T Consensus 348 FRkrHpy~FP~gs~~ty~~NTkr~AEvWmDE 378 (559)
T KOG3738|consen 348 FRKRHPYTFPGGSGNTYIKNTKRAAEVWMDE 378 (559)
T ss_pred hhccCCCcCCCCCCcchhhcchHHHHHHHHH
Confidence 22333446776666644443333
No 78
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=6.5e-09 Score=107.82 Aligned_cols=210 Identities=15% Similarity=0.122 Sum_probs=139.8
Q ss_pred CCCCeEEEEeecCCch-HHHHHHHHHHHcCCCCCCceEEEEEcCC-CChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCc
Q 005700 218 GFFPMVLVQIPMCNEK-EVYQQSIAAVCNLDWPKSKILIQVLDDS-DDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGY 295 (682)
Q Consensus 218 ~~~P~VsVvIP~yNE~-~~l~~tL~Sl~~qdYP~~~l~ViVvDD~-sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~ 295 (682)
..+|.+||+|.-.||. ..+.+|+.|++.-+=+..--+|+.+||- +.+...+.+.+++..| +-.+++.+.+.|.|
T Consensus 152 e~Lpt~SVviVFHNEGws~LmRTVHSVi~RsP~~~l~eivlvDDfSdKehLkekLDeYv~~f---nGlVkV~Rne~REG- 227 (603)
T KOG3737|consen 152 ENLPTSSVVIVFHNEGWSTLMRTVHSVIKRSPRKYLAEIVLVDDFSDKEHLKEKLDEYVKLF---NGLVKVFRNERREG- 227 (603)
T ss_pred ccCCcceEEEEEecCccHHHHHHHHHHHhcCcHHhhheEEEeccCCccHHHHHHHHHHHHHh---cCEEEEEecchhhh-
Confidence 6799999999999999 9999999999986544333367777774 4566677777776644 23444555566656
Q ss_pred chhhHHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEE------eee-Ee--ecCCCC-hHHHhhhh
Q 005700 296 KAGNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQ------ARW-SF--VNKDEN-LLTRLQDI 365 (682)
Q Consensus 296 KagaLn~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vq------g~~-~~--~n~~~~-l~t~~~~~ 365 (682)
-..+...|.+ .+.|+.++++||.|.+..+|+.-+++.+.+|..+.-|- +.. .+ ....++ ...-+...
T Consensus 228 LI~aRSiGA~---~atGeV~ifLDAHCEVntNWlpPLlAPI~rdRtvmTVP~IDgId~n~~EyrpvyG~dn~h~rGifeW 304 (603)
T KOG3737|consen 228 LIQARSIGAQ---KATGEVLIFLDAHCEVNTNWLPPLLAPISRDRTVMTVPLIDGIDGNTYEYRPVYGGDNDHARGIFEW 304 (603)
T ss_pred hhhhhccchh---hccccEEEEEecceeeecccccccccccccCceEEEEeeeeeecCCceEEeeccCCcchhhcchhhh
Confidence 5455555555 57999999999999999999999999998765543321 111 01 111112 11111111
Q ss_pred hhhhh----hHHHH---hhc-cccccccccccceEEEEeeeehhcCCCCCCC---chhHHHHHHHHHHcCCeEEEecCce
Q 005700 366 NLSFH----FEVEQ---QVN-GVFINFFGFNGTAGVWRIKALEDSGGWMERT---TVEDMDIAVRAHLRGWKFIFLNDVE 434 (682)
Q Consensus 366 ~~~~~----~~~~~---~~~-~~~~~~~~~~G~~~~~Rr~al~~iGG~~~~~---~~ED~~l~~rl~~~G~ki~y~~~a~ 434 (682)
...+. -..++ ..+ ..++ .....|..+++.|+.+.++|-+++.. -+|.+++++++.+.|-++.++|-..
T Consensus 305 gmLyKe~~~t~rE~r~RkhnsePyR-SPthAGGLfAInRe~F~ELG~YDpgLqiWGGEnfElSfKIWQCGG~i~fVPCSr 383 (603)
T KOG3737|consen 305 GMLYKEVPLTPREKRLRKHNSEPYR-SPTHAGGLFAINREFFFELGLYDPGLQIWGGENFELSFKIWQCGGKILFVPCSR 383 (603)
T ss_pred hheeccCCCCHHHHHhhhccCCCCC-CcccccceeeehHHHHHHhccCCCcceeecCcceeEEEEEEeeCCEEEEEEccc
Confidence 11000 01111 111 1222 22357889999999999999998874 3799999999999999999999776
Q ss_pred e
Q 005700 435 C 435 (682)
Q Consensus 435 ~ 435 (682)
+
T Consensus 384 V 384 (603)
T KOG3737|consen 384 V 384 (603)
T ss_pred c
Confidence 3
No 79
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=98.68 E-value=2.6e-07 Score=93.10 Aligned_cols=181 Identities=14% Similarity=0.202 Sum_probs=97.7
Q ss_pred EEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHH
Q 005700 223 VLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKS 302 (682)
Q Consensus 223 VsVvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~ 302 (682)
||| |.|+|.++.+++|++++.++..|+.. .+-+|+ .++. .+-+.+.|.
T Consensus 1 isi-I~c~n~~~~~~~~~~~i~~~~~~~~~--~i~i~~----------------------------~~~~-~s~~~~yN~ 48 (217)
T PF13712_consen 1 ISI-IICVNDEELYEECLRSIKRLIGPPGE--LIEIDN----------------------------VRNA-KSMAAAYNE 48 (217)
T ss_dssp EEE-EEEES-HHHHHHHHHHHHHTT--TEE--EEEEE-----------------------------SSS--S-TTTHHHH
T ss_pred CEE-EEEECCHHHHHHHHHHHHhhCCCCce--EEEEec----------------------------cCCC-cCHHHHHHH
Confidence 345 45667777888899999999888643 222332 1112 237778999
Q ss_pred HHhhcccCCccEEEEEcCCCCC-CHHHHHHHHHHhhcCCCeeEEE--eeeEeecCCCChHHHhhh----hhhh--hh-hH
Q 005700 303 AMNCSYVKDYEFVAIFDADFQP-NPDFLRRTVPHFKDNEELGLVQ--ARWSFVNKDENLLTRLQD----INLS--FH-FE 372 (682)
Q Consensus 303 gl~~~~~a~~d~Vl~lDaD~~~-~pd~L~~lv~~~~~~p~vg~Vq--g~~~~~n~~~~l~t~~~~----~~~~--~~-~~ 372 (682)
|++ .++++|+++++.|+.+ +++++.+++..|+++|++|++. |... ...+..++..... ..+. .+ ..
T Consensus 49 a~~---~a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~~~G~iGvaG~~~-~~~~~~~w~~~~~~g~~~~~~~~~~~~~ 124 (217)
T PF13712_consen 49 AME---KAKAKYLVFLHQDVFIINENWLEDILEIFEEDPNIGMIGVAGSKR-LPPNGVWWESPNKVGKVREYGRIMHGHG 124 (217)
T ss_dssp HGG---G--SSEEEEEETTEE-SSHHHHHHHHHHHHH-TTEEEEESEEEES-S-S-TTS---EEEEEETTEEEE----E-
T ss_pred HHH---hCCCCEEEEEeCCeEEcchhHHHHHHHHHhhCCCccEEEeecCCc-CCCCCccccccccccccccccccccccc
Confidence 999 6899999999999954 7999999999997789987764 3221 1221222111100 0000 00 00
Q ss_pred H----HHhh----ccccccccccccceEEEEeeeehhcCCCCCCCc----hhHHHHHHHHHHcCCeEEEecCceeeeccC
Q 005700 373 V----EQQV----NGVFINFFGFNGTAGVWRIKALEDSGGWMERTT----VEDMDIAVRAHLRGWKFIFLNDVECQCELP 440 (682)
Q Consensus 373 ~----~~~~----~~~~~~~~~~~G~~~~~Rr~al~~iGG~~~~~~----~ED~~l~~rl~~~G~ki~y~~~a~~~~e~p 440 (682)
. .... ......+-.+-|..++.+++.+ +|+++.. .-|.++++++.++|+++ ++++..+.+...
T Consensus 125 ~~~~~~~~~~~~~~~~~~~V~avDg~ll~~~~dv~----~fde~~~~gfH~Ydvd~cl~~~~~G~~v-~~~~~~~~H~s~ 199 (217)
T PF13712_consen 125 PNSAGEVRYGGPRNDPPEEVQAVDGLLLATQKDVP----RFDEDLFTGFHFYDVDQCLEARRAGYRV-VVPPPWCIHFSG 199 (217)
T ss_dssp ------------ES-SSEEEEEE-TTEEEEETTB---------SS--SSSSHHHHHHHHHHHTT-EE-EE-----EE-S-
T ss_pred ccccccccccccccCCceeEEEecceEEEEEcccC----CCCccccCCcchHHHHHHHHHHHhCCEE-EecCceEEEcCC
Confidence 0 0001 1123455668999999999999 7877632 36999999999999998 667777888776
Q ss_pred cCHH
Q 005700 441 ESYE 444 (682)
Q Consensus 441 ~t~~ 444 (682)
.++.
T Consensus 200 g~~~ 203 (217)
T PF13712_consen 200 GSFD 203 (217)
T ss_dssp ---S
T ss_pred CCcc
Confidence 6644
No 80
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=97.88 E-value=7.5e-05 Score=74.54 Aligned_cols=180 Identities=15% Similarity=0.132 Sum_probs=109.2
Q ss_pred eEEEEeecCCchHHHHHHHHHHHc-CCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhH
Q 005700 222 MVLVQIPMCNEKEVYQQSIAAVCN-LDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNL 300 (682)
Q Consensus 222 ~VsVvIP~yNE~~~l~~tL~Sl~~-qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaL 300 (682)
+|+|+||-+|.++.+...+..+.. +.-..-++.|+|+....+.. -+ |+..+
T Consensus 3 ~~aiivpyr~R~~~l~~~l~~~~~~L~rq~~~~~i~vi~Q~~~~~---------------------------FN-R~~ll 54 (219)
T cd00899 3 KVAIIVPFRNRFEHLLIFLPHLHPFLQRQQLDYRIFVIEQVGNFR---------------------------FN-RAKLL 54 (219)
T ss_pred ceEEEEecCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEEecCCcc---------------------------ch-hhhhh
Confidence 689999999999777776665433 00012245576766422111 11 55567
Q ss_pred HHHHhhcc-cCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHhhhhhhhhhhHHHHhhcc
Q 005700 301 KSAMNCSY-VKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNG 379 (682)
Q Consensus 301 n~gl~~~~-~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~~~~~~~~~~~~~~~~ 379 (682)
|.|+..+. ..++|++++-|.|..|..+.+.. .+...|.-..+.-. ...+.+.+
T Consensus 55 NvG~~~a~k~~~~dc~i~hDVDllP~~~~~~y---~~~~~p~H~s~~~~---------------~~~~~lpy-------- 108 (219)
T cd00899 55 NVGFLEALKDGDWDCFIFHDVDLLPENDRNLY---GCEEGPRHLSVPLD---------------KFHYKLPY-------- 108 (219)
T ss_pred hHHHHHHhhcCCccEEEEecccccccCccccc---cCCCCCeEEEEeec---------------ccccccCc--------
Confidence 77665432 23479999999999998887542 22323321111100 00011011
Q ss_pred ccccccccccceEEEEeeeehhcCCCCCCCc---hhHHHHHHHHHHcCCeEEEecCcee-----eecc-------CcCHH
Q 005700 380 VFINFFGFNGTAGVWRIKALEDSGGWMERTT---VEDMDIAVRAHLRGWKFIFLNDVEC-----QCEL-------PESYE 444 (682)
Q Consensus 380 ~~~~~~~~~G~~~~~Rr~al~~iGG~~~~~~---~ED~~l~~rl~~~G~ki~y~~~a~~-----~~e~-------p~t~~ 444 (682)
-.+.|+.++++++.+.+++||++... +||.|+..|+..+|.++...+.... ++.. +.-+.
T Consensus 109 -----~~~~Gg~~~~~k~~f~~VNGf~n~f~GWGgEDdd~~~Rl~~~g~~~~r~~~~~~~~~hL~H~~~~r~~~N~~r~~ 183 (219)
T cd00899 109 -----KTYFGGVLALTREQFRKVNGFSNAYWGWGGEDDDLYNRIKAAGLKITRPSGDTGRYKMIRHIHDKRNRDNPNRFA 183 (219)
T ss_pred -----ccccccceeeEHHHHHHhCCcCCcCccCCcchHHHHHHHHHCCCeEEeccCcccceeeeecCCCcccccCHHHHH
Confidence 12568899999999999999988643 5999999999999999888775542 2211 11234
Q ss_pred HHHHHhHhhhchhhHH
Q 005700 445 AYRKQQHRWHSGPMQL 460 (682)
Q Consensus 445 ~~~~Qr~RW~~G~~~~ 460 (682)
....++.||....+..
T Consensus 184 ~l~~~~~~~~~dGLns 199 (219)
T cd00899 184 LLQNSRERDHSDGLNS 199 (219)
T ss_pred HHHhhCeEeccCCccc
Confidence 4455666676655544
No 81
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=97.77 E-value=0.00022 Score=77.94 Aligned_cols=206 Identities=18% Similarity=0.217 Sum_probs=102.1
Q ss_pred CCCCeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEecc-------
Q 005700 218 GFFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRI------- 290 (682)
Q Consensus 218 ~~~P~VsVvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~------- 290 (682)
...|.+-|+|-+||..+.+.+||+++++..-..++..|+|..||+++.+.+.++.. . -.+.+++..
T Consensus 90 ~~~~~~pVlV~AcNRp~yl~r~L~sLl~~rp~~~~fpIiVSQDg~~~~~~~vi~~y----~---~~v~~i~~~~~~~i~~ 162 (434)
T PF03071_consen 90 NKEPVIPVLVFACNRPDYLRRTLDSLLKYRPSAEKFPIIVSQDGDDEEVAEVIKSY----G---DQVTYIQHPDFSPITI 162 (434)
T ss_dssp -------EEEEESS-TT-HHHHHHHHHHH-S-TTTS-EEEEE-TT-HHHHHHHHGG----G---GGSEEEE-S--S----
T ss_pred cCCCcceEEEEecCCcHHHHHHHHHHHHcCCCCCCccEEEEecCCcHHHHHHHHHh----h---hhheeeecCCcCCcee
Confidence 34667889999999999999999999986522346679999999999888776632 1 112222211
Q ss_pred CCCCcc-------hhhHHHHHhhcc-cCCccEEEEEcCCCCCCHHHHHH---HHHHhhcCCCeeEEEeeeEeecCCCChH
Q 005700 291 LRDGYK-------AGNLKSAMNCSY-VKDYEFVAIFDADFQPNPDFLRR---TVPHFKDNEELGLVQARWSFVNKDENLL 359 (682)
Q Consensus 291 ~~~g~K-------agaLn~gl~~~~-~a~~d~Vl~lDaD~~~~pd~L~~---lv~~~~~~p~vg~Vqg~~~~~n~~~~l~ 359 (682)
.+...| +.-...|+.... .-+++.|+++..|..+.||+++- +.+.+++||.+-+|++-. .|......
T Consensus 163 ~~~~~~~~~y~~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~~~~ll~~D~sl~ciSawN--dnG~~~~~ 240 (434)
T PF03071_consen 163 PPKEKKFKGYYKIARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFSATLPLLENDPSLWCISAWN--DNGKEHFV 240 (434)
T ss_dssp -TT-GGGHHHHHHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHHHHHHHHHH-TTEEEEES----TT-BGGGS
T ss_pred CcccccccchHHHHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHHHHHHHHhcCCCeEEEEccc--cCCccccc
Confidence 011101 111222333221 34689999999999999988754 556667789998888742 12111110
Q ss_pred HHhhhhhhhhhhHHHHhhccccccccccccceEEEEeeeehhcC-CCCCCCchhHHHHHHHHHHcCCeEEEecCce---e
Q 005700 360 TRLQDINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEDSG-GWMERTTVEDMDIAVRAHLRGWKFIFLNDVE---C 435 (682)
Q Consensus 360 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~iG-G~~~~~~~ED~~l~~rl~~~G~ki~y~~~a~---~ 435 (682)
.. .........-.++|-+-|.+|+.++++. .|+.. . =|..+-....++|..++. |+.- .
T Consensus 241 ~~--------------~~~~~lyRsdffpglGWml~r~~w~el~~~Wp~~-~-WDdwmR~~~~rkgR~cIr-PeisRt~~ 303 (434)
T PF03071_consen 241 DD--------------SRPSLLYRSDFFPGLGWMLTRELWDELEPKWPKA-F-WDDWMRQPEQRKGRQCIR-PEISRTYH 303 (434)
T ss_dssp -T--------------T-TT-EEEESS---SSEEEEHHHHHHHGGG--SS---HHHHHTSHHHHTT-EEEE-ESSBSEEE
T ss_pred cC--------------CCccceEecccCCchHHHhhHHHHHhhcccCCCC-C-chhhhcCccccCCCceee-ccCCCccc
Confidence 00 0001111122268889999999999875 46543 2 344444556777866665 4432 3
Q ss_pred eeccCcCHHHHHHH
Q 005700 436 QCELPESYEAYRKQ 449 (682)
Q Consensus 436 ~~e~p~t~~~~~~Q 449 (682)
.+....+...++.+
T Consensus 304 fg~~G~s~g~~f~~ 317 (434)
T PF03071_consen 304 FGKKGVSNGQFFDK 317 (434)
T ss_dssp --SSSSS-THHHHH
T ss_pred cCcCCcchHHHHHH
Confidence 34445554455443
No 82
>PF09488 Osmo_MPGsynth: Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth); InterPro: IPR012812 This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together with mannosyl-3-phosphoglycerate phosphatase (MPGP), comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus (Rhodothermus obamensis), this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.; GO: 0050504 mannosyl-3-phosphoglycerate synthase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm; PDB: 2WVM_A 2WVL_A 2WVK_A 2ZU7_B 2ZU9_B 2ZU8_A.
Probab=97.40 E-value=0.00085 Score=70.43 Aligned_cols=127 Identities=15% Similarity=0.198 Sum_probs=63.8
Q ss_pred CCeEEEEeecCCch-HHHHHHHHHHHcCCCCCCceEEEEEcCCCC---hhHHHHHHHHHHHHhhcCCeEEEEecc-----
Q 005700 220 FPMVLVQIPMCNEK-EVYQQSIAAVCNLDWPKSKILIQVLDDSDD---PTAQTLIKEEVLKWQEAGANIVYRHRI----- 290 (682)
Q Consensus 220 ~P~VsVvIP~yNE~-~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sd---d~t~~~l~~~~~~~~~~~v~v~~~~r~----- 290 (682)
+-..+|||||.||+ ..++..|.+ -|.++. |+||.||+. |......+...+.+....-++..+|..
T Consensus 49 l~~maIVVP~KnE~l~lleGVL~g-----IPh~C~-IIvVSNS~r~~~d~f~~E~d~l~~f~~~t~r~~~~vHQkDp~lA 122 (381)
T PF09488_consen 49 LSKMAIVVPCKNEKLKLLEGVLSG-----IPHDCL-IIVVSNSSREPVDRFKMEVDLLKHFCRLTRRQIIIVHQKDPGLA 122 (381)
T ss_dssp HTTEEEEEEESS--HHHHHHHHHC-----S-TTSE-EEEEE---CSSSCHHHHHHHHHHHHHHHCT--EEEEETT-HHHH
T ss_pred HhCcEEEEECCCCchhhhhhhhhc-----CCCCCe-EEEEECCCCCCccHHHHHHHHHHHHHHhhcCceEEEecCCHHHH
Confidence 34689999999999 555555544 366555 678888877 555443332222111222333333331
Q ss_pred -----------------CCCCcchhhHHHHHhhcccCCccEEEEEcCCCCCCHHH---HHHHHHHhhc-CCCeeEEEeee
Q 005700 291 -----------------LRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPNPDF---LRRTVPHFKD-NEELGLVQARW 349 (682)
Q Consensus 291 -----------------~~~g~KagaLn~gl~~~~~a~~d~Vl~lDaD~~~~pd~---L~~lv~~~~~-~p~vg~Vqg~~ 349 (682)
.|. ||+.+|-.|+-.+.....+||-|+|||..++-.. .+.....|.- ......|--.|
T Consensus 123 ~Af~~aGy~~il~~~g~VR~-GKgEGMiiGillAk~~g~~YVGFvDADNyiPGaV~EYvk~yAAGf~ms~spytMVRi~W 201 (381)
T PF09488_consen 123 EAFKEAGYPEILDEDGLVRN-GKGEGMIIGILLAKAPGKRYVGFVDADNYIPGAVNEYVKDYAAGFAMSESPYTMVRIHW 201 (381)
T ss_dssp HHHHHTT--TTB-TTSSB-S-SHHHHHHHHHHHHHHTT-SEEEE--TTBS-HHHHHHHHHHHHHHHHC-SSSCEEEEEE-
T ss_pred HHHHHcCcHHHhCCCCceec-CchHHHHHHHHHHHhcCCceEeEeeccCCCcchHHHHHHHHHhhhcccCCCceEEEEEe
Confidence 134 4999999888766567889999999999876533 2222333321 33456676666
Q ss_pred Eeec
Q 005700 350 SFVN 353 (682)
Q Consensus 350 ~~~n 353 (682)
.+..
T Consensus 202 ~~KP 205 (381)
T PF09488_consen 202 RSKP 205 (381)
T ss_dssp ----
T ss_pred cCCC
Confidence 6543
No 83
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=97.33 E-value=0.0021 Score=66.08 Aligned_cols=117 Identities=16% Similarity=0.207 Sum_probs=79.5
Q ss_pred CCCCeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEE-EEEcCCC-ChhHHHHHHHHHHHHhh------cCCeEEEEec
Q 005700 218 GFFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILI-QVLDDSD-DPTAQTLIKEEVLKWQE------AGANIVYRHR 289 (682)
Q Consensus 218 ~~~P~VsVvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~V-iVvDD~s-dd~t~~~l~~~~~~~~~------~~v~v~~~~r 289 (682)
...++|.|+.|..|-+..+..-.+.+.+++||.+.+.+ +++.|++ -|.+.+.+++..++... .--.++....
T Consensus 22 ~~~e~VLILtplrna~~~l~~y~~~L~~L~YP~~lIsLgfLv~d~~e~d~t~~~l~~~~~~~q~~~~~~~~F~~itIl~~ 101 (269)
T PF03452_consen 22 RNKESVLILTPLRNAASFLPDYFDNLLSLTYPHELISLGFLVSDSSEFDNTLKILEAALKKLQSHGPESKRFRSITILRK 101 (269)
T ss_pred ccCCeEEEEEecCCchHHHHHHHHHHHhCCCCchheEEEEEcCCCchhHHHHHHHHHHHHHHhccCcccCCcceEEEEcC
Confidence 45789999999999999999999999999999998877 4445544 26777777766554432 1112222221
Q ss_pred c----------CCCCc---------chhhHHHHHhhcccCCccEEEEEcCCC-CCCHHHHHHHHH
Q 005700 290 I----------LRDGY---------KAGNLKSAMNCSYVKDYEFVAIFDADF-QPNPDFLRRTVP 334 (682)
Q Consensus 290 ~----------~~~g~---------KagaLn~gl~~~~~a~~d~Vl~lDaD~-~~~pd~L~~lv~ 334 (682)
. .|+.. -|.+.|..+-.+.....+||+.+|+|. ..+|+.|++++.
T Consensus 102 df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN~LL~~aL~p~~swVlWlDaDIv~~P~~lI~dli~ 166 (269)
T PF03452_consen 102 DFGQQLSQDRSERHAFEVQRPRRRAMARARNFLLSSALGPWHSWVLWLDADIVETPPTLIQDLIA 166 (269)
T ss_pred CCcccccCchhhccchhhHHHHHHHHHHHHHHHHHhhcCCcccEEEEEecCcccCChHHHHHHHh
Confidence 1 12211 223456666555455789999999999 467888888865
No 84
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=97.24 E-value=0.0016 Score=56.68 Aligned_cols=83 Identities=19% Similarity=0.212 Sum_probs=56.4
Q ss_pred CCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCC-cchhhHHHHHhhcc
Q 005700 230 CNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDG-YKAGNLKSAMNCSY 308 (682)
Q Consensus 230 yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g-~KagaLn~gl~~~~ 308 (682)
+||+..|.+.|....++... + ++|+||+|+|.+.+++++ ..++.+.....+.+.. .....++...+.
T Consensus 1 rne~~~L~~wl~~~~~lG~d--~--i~i~d~~s~D~t~~~l~~------~~~v~i~~~~~~~~~~~~~~~~~~~~~~~-- 68 (97)
T PF13704_consen 1 RNEADYLPEWLAHHLALGVD--H--IYIYDDGSTDGTREILRA------LPGVGIIRWVDPYRDERRQRAWRNALIER-- 68 (97)
T ss_pred CChHHHHHHHHHHHHHcCCC--E--EEEEECCCCccHHHHHHh------CCCcEEEEeCCCccchHHHHHHHHHHHHh--
Confidence 68999999999999887654 3 778999999999988864 2446655443322222 122233333332
Q ss_pred cCCccEEEEEcCCCCC
Q 005700 309 VKDYEFVAIFDADFQP 324 (682)
Q Consensus 309 ~a~~d~Vl~lDaD~~~ 324 (682)
..++|+++++|+|-.+
T Consensus 69 ~~~~dWvl~~D~DEfl 84 (97)
T PF13704_consen 69 AFDADWVLFLDADEFL 84 (97)
T ss_pred CCCCCEEEEEeeeEEE
Confidence 3578999999999854
No 85
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=97.16 E-value=0.0034 Score=65.63 Aligned_cols=101 Identities=16% Similarity=0.137 Sum_probs=60.7
Q ss_pred CCeEEEEeecCCch-HHHHHHHHHHHcCCCCCCceEEEEEcCCCC---hhHHHHHHHHHHHHhhcCCeEEEEecc-----
Q 005700 220 FPMVLVQIPMCNEK-EVYQQSIAAVCNLDWPKSKILIQVLDDSDD---PTAQTLIKEEVLKWQEAGANIVYRHRI----- 290 (682)
Q Consensus 220 ~P~VsVvIP~yNE~-~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sd---d~t~~~l~~~~~~~~~~~v~v~~~~r~----- 290 (682)
.-...|+|||.||+ ..++-.|.+ -|.++. |+||.||+. |.....++....-+...+-++..+|..
T Consensus 49 ~~~maIVVP~KdE~l~lleGVL~g-----IPh~c~-iIvVSNS~r~~~d~f~~E~d~~~~f~~~t~r~~i~vHQkDp~la 122 (381)
T TIGR02460 49 LGKTAIVVPVKNEKLHLLEGVLSG-----IPHECP-IIIVSNSKREPPDRFKMEVDLIRHFSNLTHRKIIIIHQKDPALA 122 (381)
T ss_pred HhCcEEEEEcCCCchhHHhhHhhc-----CCCCCe-EEEEeCCCCCChhHHHHHHHHHHHHHHhhcCceEEEEcCCHHHH
Confidence 45689999999999 555555443 376554 678888765 333322222111111111122222211
Q ss_pred -----------------CCCCcchhhHHHHHhhcccCCccEEEEEcCCCCCCHH
Q 005700 291 -----------------LRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPNPD 327 (682)
Q Consensus 291 -----------------~~~g~KagaLn~gl~~~~~a~~d~Vl~lDaD~~~~pd 327 (682)
.|+ ||+.+|-.|+-.+.....+||-|+|||..++-.
T Consensus 123 ~Af~~~gy~~il~~~g~VR~-GKgEGMiiG~lLAk~~g~~YVGFiDaDNyiPGa 175 (381)
T TIGR02460 123 EAFKEVGYTSILGENGRVRS-GKGEGMLLGLLLAKAIGAEYVGFVDADNYFPGA 175 (381)
T ss_pred HHHHHcCchhhhCCCCceec-CcchHHHHHHHHHHHhCCceEeEeecccCCCch
Confidence 134 499999888876556678999999999987653
No 86
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=97.15 E-value=0.0033 Score=66.09 Aligned_cols=100 Identities=15% Similarity=0.176 Sum_probs=60.2
Q ss_pred CCeEEEEeecCCch-HHHHHHHHHHHcCCCCCCceEEEEEcCCCC---hhHHHHHHHHHHHHhhcCCeEEEEec------
Q 005700 220 FPMVLVQIPMCNEK-EVYQQSIAAVCNLDWPKSKILIQVLDDSDD---PTAQTLIKEEVLKWQEAGANIVYRHR------ 289 (682)
Q Consensus 220 ~P~VsVvIP~yNE~-~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sd---d~t~~~l~~~~~~~~~~~v~v~~~~r------ 289 (682)
.-...|+|||.||+ ..++-.|.+ -|.++. |+||.||+. |.....++....-+....-++..+|.
T Consensus 50 ~~~mAIVVP~KdE~l~lleGVL~g-----IPh~c~-iIvVSNS~r~~~d~f~~E~dlv~~f~~~t~r~~i~vHQkDp~la 123 (393)
T PRK14503 50 LGRMAIVVPVKNERLKLLEGVLKG-----IPHECP-IIVVSNSKREPPDRFKLEVDLVRHFYRLTQRPIIIVHQKDPGLA 123 (393)
T ss_pred HhCcEEEEEcCCCchhHHhhHhhc-----CCCCCe-EEEEeCCCCCCchHHHHHHHHHHHHHhhhcCceEEEEcCCHHHH
Confidence 44689999999999 555555444 376554 668888765 43333222211111111112222221
Q ss_pred ----------------cCCCCcchhhHHHHHhhcccCCccEEEEEcCCCCCCH
Q 005700 290 ----------------ILRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPNP 326 (682)
Q Consensus 290 ----------------~~~~g~KagaLn~gl~~~~~a~~d~Vl~lDaD~~~~p 326 (682)
..|+ ||+.+|-.|+-.+.....+||-|+|||..++-
T Consensus 124 ~Af~~aGyp~il~~~g~VR~-GKgEGMiiG~lLAk~~g~~YVGFiDADNyiPG 175 (393)
T PRK14503 124 EALKEAGYPYILDENGLVRS-GKGEGMIIGLLLAKALGARYVGFVDADNYIPG 175 (393)
T ss_pred HHHHHcCChhhhCCCCceec-CcchHHHHHHHHHHHhCCCeEeEeecccCCCc
Confidence 1134 49999988887655667899999999997765
No 87
>KOG3588 consensus Chondroitin synthase 1 [Carbohydrate transport and metabolism]
Probab=96.90 E-value=0.036 Score=58.35 Aligned_cols=203 Identities=15% Similarity=0.147 Sum_probs=116.1
Q ss_pred CCCCeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEE-cCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcc
Q 005700 218 GFFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVL-DDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYK 296 (682)
Q Consensus 218 ~~~P~VsVvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVv-DD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~K 296 (682)
-+.|.+.+++|...+.....+...++|... ++++.+.|+ -+.|+++-..- +....++..-+++....- +..=..
T Consensus 226 i~~pgih~i~pl~gr~~~f~rf~q~~c~~~--d~~l~l~vv~f~~se~e~ak~--e~~tslra~f~~~q~l~l-ngeFSR 300 (494)
T KOG3588|consen 226 IEDPGIHMIMPLRGRAAIFARFAQSICARG--DDRLALSVVYFGYSEDEMAKR--ETITSLRASFIPVQFLGL-NGEFSR 300 (494)
T ss_pred ccCCCceEEEeccchHHHhhhhhHHHhccC--CCceEEEEEEecCCChHHHhh--hHHHHHhhcCCceEEecc-cchhhh
Confidence 356789999999999999999999998753 445544443 33344433221 223333334444444321 111236
Q ss_pred hhhHHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCC-ChHHHhhhhhh-hhhhHHH
Q 005700 297 AGNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDE-NLLTRLQDINL-SFHFEVE 374 (682)
Q Consensus 297 agaLn~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~-~l~t~~~~~~~-~~~~~~~ 374 (682)
+.|+..|.+.. ...-.+.++|-|.....++|.++-.--.-+.++ -.+..+..-+. .+.. +.... ..++...
T Consensus 301 a~aL~vGAe~~--~~nvLLFfcDVDi~FT~efL~rcr~Nt~~gkqi---yfPivFS~ynp~ivy~--~~~~~p~e~~~~~ 373 (494)
T KOG3588|consen 301 AKALMVGAETL--NANVLLFFCDVDIYFTTEFLNRCRLNTILGKQI---YFPIVFSQYNPEIVYE--QDKPLPAEQQLVI 373 (494)
T ss_pred hHHHHhhHHHh--ccceeEEEeccceeehHHHHHHHhhccCCCceE---EEEEEEeecCcceeec--CCCCCchhHheee
Confidence 66788887752 345567788999999999998875543322221 12222211111 1111 11100 0011111
Q ss_pred HhhccccccccccccceEEEEeeeehhcCCCCCC---CchhHHHHHHHHHHcCCeEEEecCcee
Q 005700 375 QQVNGVFINFFGFNGTAGVWRIKALEDSGGWMER---TTVEDMDIAVRAHLRGWKFIFLNDVEC 435 (682)
Q Consensus 375 ~~~~~~~~~~~~~~G~~~~~Rr~al~~iGG~~~~---~~~ED~~l~~rl~~~G~ki~y~~~a~~ 435 (682)
..-.+.++++ + -|-.|.||-+. -++|||+.. --+||.++..+..+.|.+++-.|++-.
T Consensus 374 ~~~tGfwRdf-G-fGmtc~yrsd~-~~vgGFD~~I~GWG~EDV~Ly~K~v~~~l~viR~p~pGl 434 (494)
T KOG3588|consen 374 KKDTGFWRDF-G-FGMTCQYRSDF-LTVGGFDMEIKGWGGEDVDLYRKYVHSGLKVIRTPEPGL 434 (494)
T ss_pred cccccccccc-C-CceeEEeeccc-eeecCcceeeeccCcchHHHHHHHHhcCcEEEecCCCce
Confidence 1112333332 2 46667777554 568899864 346999999999999999999888763
No 88
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=96.85 E-value=0.062 Score=54.32 Aligned_cols=196 Identities=12% Similarity=0.106 Sum_probs=99.2
Q ss_pred CeEEEEeecCCch--HH-HHHHHH--HHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCc
Q 005700 221 PMVLVQIPMCNEK--EV-YQQSIA--AVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGY 295 (682)
Q Consensus 221 P~VsVvIP~yNE~--~~-l~~tL~--Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~ 295 (682)
|..+++||+--.+ .. -.+.+. ++..---+.+-..|+++|+++.-. .++..+-+...++.|..-.....+
T Consensus 2 ~~~~~iiPv~~S~e~p~~~~R~f~~~~~~k~fts~~~~~vi~~~~~~~~d------~~i~~~i~~~~~~~yl~~~s~~~F 75 (346)
T COG4092 2 QPNGEIIPVAESEELPLTDSRQFSRTSAVKVFTSSDITMVICLRAHEVMD------RLIRSYIDPMPRVLYLDFGSPEPF 75 (346)
T ss_pred CCcceEeecchhhccchhHHHHHhhHhhhhhccccccEEEEEEecchhHH------HHHHHHhccccceEEEecCCCccc
Confidence 4567788876443 11 122222 222222244556788888865222 223334456677777644322211
Q ss_pred --chhhHHHHHhhc-ccCCccEEEEEcCCCCCCHHHHHHHH-----HHhhcCCCeeEEEeeeEeecCCCChHH-Hhhhhh
Q 005700 296 --KAGNLKSAMNCS-YVKDYEFVAIFDADFQPNPDFLRRTV-----PHFKDNEELGLVQARWSFVNKDENLLT-RLQDIN 366 (682)
Q Consensus 296 --KagaLn~gl~~~-~~a~~d~Vl~lDaD~~~~pd~L~~lv-----~~~~~~p~vg~Vqg~~~~~n~~~~l~t-~~~~~~ 366 (682)
-+..-|.|...+ ...+.++|+++|.||....|-..+++ ..+..+-+ +..--+..+.|+..+..- ....+.
T Consensus 76 ~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~dnF~k~l~~~~ikk~~tnI~-a~~vlPV~~LNk~~~~v~f~~~d~f 154 (346)
T COG4092 76 ASETICANNGADYSHEKCESNLVLFLDVDCFGSSDNFAKMLSIATIKKMRTNID-APLVLPVYHLNKADTQVFFDVEDMF 154 (346)
T ss_pred cchhhhhhccchhhhccccccEEEEEeccccccHHHHHHHHHHHHHHHHHhccC-cceeeeeeecchhhhhHHHHHHHHh
Confidence 112234444432 13468899999999999865555555 33332222 233344456666443111 111111
Q ss_pred hh--hhhHHHHhhccccccccccccceEEEEeeeehhcCCCCCC---CchhHHHHHHHHHHc
Q 005700 367 LS--FHFEVEQQVNGVFINFFGFNGTAGVWRIKALEDSGGWMER---TTVEDMDIAVRAHLR 423 (682)
Q Consensus 367 ~~--~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~iGG~~~~---~~~ED~~l~~rl~~~ 423 (682)
.. .........+....-+........++.+..+...||+++. +..||.++..|+...
T Consensus 155 ~d~~i~es~~~~~~~~~~ff~~~~T~~~liN~~~F~~tgGydE~F~GhG~EDfe~~~R~~l~ 216 (346)
T COG4092 155 LDAMIFESPLAEFRKEDNFFIAPYTNIFLINRRMFSLTGGYDERFRGHGSEDFEFLTRLGLY 216 (346)
T ss_pred hhhHhhhhHHHHhCcccccccccccceEEEehhHHHHhcCCccccccCCchhHHHHHHHHHH
Confidence 10 0000011111111111123445678899999999999986 456999999998664
No 89
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=96.44 E-value=0.02 Score=66.09 Aligned_cols=102 Identities=14% Similarity=0.200 Sum_probs=61.6
Q ss_pred CCeEEEEeecCCch-HHHHHHHHHHHcCCCCCCceEEEEEcCCCC---hhHHHHHH---HHHHHHhhcCCeEEEEec---
Q 005700 220 FPMVLVQIPMCNEK-EVYQQSIAAVCNLDWPKSKILIQVLDDSDD---PTAQTLIK---EEVLKWQEAGANIVYRHR--- 289 (682)
Q Consensus 220 ~P~VsVvIP~yNE~-~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sd---d~t~~~l~---~~~~~~~~~~v~v~~~~r--- 289 (682)
.-...|||||.||+ ..++-.|.+ -|.++. |+||.||+. |......+ ..+. +.+..+-+++...
T Consensus 54 ~~~~aivvp~k~e~~~~~~gvl~~-----ip~~c~-ii~vsns~r~~~d~~~~e~~~~~~~~~-~~~~~~~~vhq~dp~~ 126 (694)
T PRK14502 54 EKKMAIVLPIKDEDLKVFEGVLSG-----IPHDCL-MIVISNSSKQEVDNFKNEKDIVNRFCR-ITHRQAIVVHQKNPEL 126 (694)
T ss_pred HhCcEEEEEcCCCchhHHhhHhhc-----CCCCCe-EEEEeCCCCCchHHHHHHHHHHHHHHH-hhcCceEEEEcCCHHH
Confidence 44688999999999 555555444 376555 678888775 33332222 2211 1111121221111
Q ss_pred -----------------cCCCCcchhhHHHHHhhcccCCccEEEEEcCCCCCCHHHH
Q 005700 290 -----------------ILRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPNPDFL 329 (682)
Q Consensus 290 -----------------~~~~g~KagaLn~gl~~~~~a~~d~Vl~lDaD~~~~pd~L 329 (682)
..|. ||+.+|-.|+-.+.....+||-|+|||..++-..-
T Consensus 127 a~a~~~~g~~~~~~~~~~vr~-gk~egm~~g~~la~~~g~~yvgfidadny~pg~v~ 182 (694)
T PRK14502 127 ANAIADAGYPELLGEDGLIRS-GKAEGMILGIILTMFSGRDYVGFIDTDNYIPGAVW 182 (694)
T ss_pred HHHHHHcCChhhhCCCCceec-CcchHHHHHHHHHHhcCCceEeEeeccCCCCchHH
Confidence 1134 49999988887665677899999999998765433
No 90
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=95.80 E-value=0.29 Score=55.65 Aligned_cols=202 Identities=15% Similarity=0.131 Sum_probs=108.4
Q ss_pred CCeEEEEeecCCc-hHHHHHHHHHHHcC-CCCCCceE-EEEEcCC-CC-hh---HHHHHHHHHHHHhhcCCeEEEEeccC
Q 005700 220 FPMVLVQIPMCNE-KEVYQQSIAAVCNL-DWPKSKIL-IQVLDDS-DD-PT---AQTLIKEEVLKWQEAGANIVYRHRIL 291 (682)
Q Consensus 220 ~P~VsVvIP~yNE-~~~l~~tL~Sl~~q-dYP~~~l~-ViVvDD~-sd-d~---t~~~l~~~~~~~~~~~v~v~~~~r~~ 291 (682)
...|.||||..+. .+.+.+-++...+. --++++.. ++|+..+ .+ +. +.+.++++..+++. .++.++....
T Consensus 246 ~~~V~iIvPl~~r~~~~~~~Fl~~~~~~~l~~~~~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~--~~i~~i~~~~ 323 (499)
T PF05679_consen 246 STRVHIIVPLSGREADWFRRFLENFEKVCLETDDNVFLTVVLFYDPSDSDSISQIKELLEELERKYPF--SRIKWISVKT 323 (499)
T ss_pred CCEEEEEEEecCccHHHHHHHHHHHHHHhcccCCceEEEEEEecCcccchhHHHHHHHHHHHHHhCCc--cceEEEEecC
Confidence 4789999999999 66666555554331 00122332 3333322 22 21 23355555554433 4444443332
Q ss_pred CCCcchhhHHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEee--cCCCChHHHhhhhhhhh
Q 005700 292 RDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFV--NKDENLLTRLQDINLSF 369 (682)
Q Consensus 292 ~~g~KagaLn~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~--n~~~~l~t~~~~~~~~~ 369 (682)
+.-.++.+|..|++. ....+.++++|-|..+++++|.++-..-..+.. |-.|..+. |++-. ........-
T Consensus 324 ~~fsr~~~Ld~g~~~--~~~d~L~f~~Dvd~~f~~~fL~rcR~nti~g~q---vy~PI~Fs~y~p~~~-~~~~~~~~~-- 395 (499)
T PF05679_consen 324 GEFSRGAALDVGAKK--FPPDSLLFFCDVDMVFTSDFLNRCRMNTIPGKQ---VYFPIVFSQYNPDIV-YAGKPPEPD-- 395 (499)
T ss_pred CCccHHHHHHhhccc--CCCCcEEEEEeCCcccCHHHHHHHHHhhhcCcE---EEEeeeccccCCccc-ccCCCCccc--
Confidence 333477888888884 456789999999999999999998655432211 22333331 22110 000000000
Q ss_pred hhHHHHhhccccccccccccceEEEEeeeehhc-CCCCCC---CchhHHHHHHHHHHcC--CeEEEecCce
Q 005700 370 HFEVEQQVNGVFINFFGFNGTAGVWRIKALEDS-GGWMER---TTVEDMDIAVRAHLRG--WKFIFLNDVE 434 (682)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~i-GG~~~~---~~~ED~~l~~rl~~~G--~ki~y~~~a~ 434 (682)
... .....|.+... --|-.++|+.+....- ||++.. ..+||.++.-+..+.| ..+.=.+++-
T Consensus 396 ~~~-i~~~~G~w~~~--gfg~~~~YksDy~~~~~~~~~~~~~gwg~ED~~l~~~~l~~~~~l~V~Ra~ep~ 463 (499)
T PF05679_consen 396 QFD-ISKDTGFWRRF--GFGMVCFYKSDYMRIRGGGFDLSIRGWGGEDVDLYDKFLKSGHKLHVFRAVEPG 463 (499)
T ss_pred cCc-cCCCCCccccC--CCceEEEEhhhhhhhcccccccccccccccHHHHHHHHHhCCCceEEEEccCCC
Confidence 000 00111222111 2366677776655442 455443 4579999999999999 7777766664
No 91
>PF01644 Chitin_synth_1: Chitin synthase; InterPro: IPR004834 This region is found commonly in chitin synthases classes I, II and III 2.4.1.16 from EC. Chitin a linear homopolymer of GlcNAc residues, it is an important component of the cell wall of fungi and is synthesised on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases []. ; GO: 0004100 chitin synthase activity, 0006031 chitin biosynthetic process
Probab=95.69 E-value=0.095 Score=49.88 Aligned_cols=53 Identities=13% Similarity=0.145 Sum_probs=36.2
Q ss_pred eEEEEeccCCCCcchhhHHHHHhhc-ccCCccEEEEEcCCCCCCHHHHHHHHHHh
Q 005700 283 NIVYRHRILRDGYKAGNLKSAMNCS-YVKDYEFVAIFDADFQPNPDFLRRTVPHF 336 (682)
Q Consensus 283 ~v~~~~r~~~~g~KagaLn~gl~~~-~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~ 336 (682)
++++.-.++|.+ |-..-...++.. ..-+.++++++|+.+.|.+++|-++...|
T Consensus 110 Q~ifclKe~N~k-KinSHrWfFnaf~~~l~P~vcvllDvGT~P~~~siy~Lwkaf 163 (163)
T PF01644_consen 110 QIIFCLKEKNAK-KINSHRWFFNAFCRQLQPNVCVLLDVGTKPGKDSIYHLWKAF 163 (163)
T ss_pred EEEEEecccccc-ccchhhHHHHHHHhhcCCcEEEEEecCCCcCchHHHHHHhhC
Confidence 344444444444 655544444421 25689999999999999999999887654
No 92
>PF11316 Rhamno_transf: Putative rhamnosyl transferase ; InterPro: IPR021466 This bacterial family of proteins has no known function.
Probab=95.15 E-value=0.16 Score=51.85 Aligned_cols=93 Identities=15% Similarity=0.167 Sum_probs=64.6
Q ss_pred HHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhhcccCCccEEEE
Q 005700 238 QSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVKDYEFVAI 317 (682)
Q Consensus 238 ~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~~~~a~~d~Vl~ 317 (682)
-|+.|+.+|+-|+..+ +++.|+.+.+...+.+++..+.++ .+++++. + .+....++...++.......++++.
T Consensus 46 ~~LpSl~~QTd~dF~~-lv~~~~~~P~~~~~rL~~l~~~~p--~~~i~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (234)
T PF11316_consen 46 YCLPSLRAQTDQDFTW-LVLFDDDLPEPYRERLRDLLADYP--QFRIVFR--P--PGPHRDAMRRAINAARRDGADPVLQ 118 (234)
T ss_pred HHhhHHHhccCCCeEE-EEEECCCCCHHHHHHHHHHhccCC--CcEEEec--C--CchHHHHHHHHHhhhccCCCCEEEE
Confidence 4799999999998665 456777788877777776655332 2444433 2 2335567777764333456666655
Q ss_pred --EcCCCCCCHHHHHHHHHHhh
Q 005700 318 --FDADFQPNPDFLRRTVPHFK 337 (682)
Q Consensus 318 --lDaD~~~~pd~L~~lv~~~~ 337 (682)
+|+|+-+..|+++++-....
T Consensus 119 ~RLDdDDAl~~dFV~rlr~~a~ 140 (234)
T PF11316_consen 119 FRLDDDDALHRDFVARLRRAAA 140 (234)
T ss_pred EEECCcchhhHHHHHHHHHHHH
Confidence 59999999999999988874
No 93
>PF02709 Glyco_transf_7C: N-terminal domain of galactosyltransferase; InterPro: IPR003859 This is a family of galactosyltransferases from a wide range of metazoa with three related galactosyltransferase activities; all three of which are possessed by one sequence in some cases. The three functions are N-acetyllactosamine synthase (2.4.1.90 from EC); beta-N-acetylglucosaminyl-glycopeptide beta-1,4-galactosyltransferase (2.4.1.38 from EC); and lactose synthase (2.4.1.22 from EC). Note that N-acetyllactosamine synthase is a component of lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin N-acetyllactosamine synthase is used.; GO: 0016757 transferase activity, transferring glycosyl groups, 0005975 carbohydrate metabolic process; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=94.69 E-value=0.025 Score=47.30 Aligned_cols=48 Identities=25% Similarity=0.201 Sum_probs=34.6
Q ss_pred cccceEEEEeeeehhcCCCCCCCc---hhHHHHHHHHHHcCCeEEEecCce
Q 005700 387 FNGTAGVWRIKALEDSGGWMERTT---VEDMDIAVRAHLRGWKFIFLNDVE 434 (682)
Q Consensus 387 ~~G~~~~~Rr~al~~iGG~~~~~~---~ED~~l~~rl~~~G~ki~y~~~a~ 434 (682)
+.|..++++++.++++|||++... .||.|+..|+...|.++...+...
T Consensus 19 ~~Gg~~~~~~~~f~~vnGfde~f~gWG~ED~Dl~~Rl~~~g~~~~~~~~~~ 69 (78)
T PF02709_consen 19 FFGGVFAISREDFEKVNGFDERFWGWGGEDDDLYNRLWKAGLKIVRVPGSI 69 (78)
T ss_dssp ---SEEEEEHHHHHHTTSS-SS-TSCSSHHHHHHHHHHHTT---B-SSTTT
T ss_pred eeEEEEEEeHHHHHHcCCCCccccccCccHHHHHHHHHHcCCeEEecCCce
Confidence 678899999999999999998744 599999999999999987766544
No 94
>PF11397 GlcNAc: Glycosyltransferase (GlcNAc); InterPro: IPR021067 GlcNAc is an enzyme that carries out the first glycosylation step of hydroxylated Skp1; it is found in the cytoplasm and results in a pentasaccharide-linked 'HyPro-143[, ].
Probab=94.25 E-value=0.38 Score=51.83 Aligned_cols=210 Identities=8% Similarity=0.053 Sum_probs=111.2
Q ss_pred EEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHH----------------------HHHHH-HHHH---
Q 005700 223 VLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQ----------------------TLIKE-EVLK--- 276 (682)
Q Consensus 223 VsVvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~----------------------~~l~~-~~~~--- 276 (682)
|-|.|+.|...+ ...||.++.++.-.++++.|-|++....++.. ..... ....
T Consensus 2 IFvsiasyRD~~-c~~Tl~~~~~~A~~P~r~~~gv~~Q~~~~~~~c~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 80 (343)
T PF11397_consen 2 IFVSIASYRDPE-CAPTLKDLFARATNPERLFVGVVWQHYEEDPPCLSEGAPMDPGVHAAREEECVYCFLASSACAEWPD 80 (343)
T ss_pred EEEEEeeecCch-HHHHHHHHHHhcCCCceEEEEEEEEecCCCCcccccccccccccccccccchhhhhhhccccccccc
Confidence 668899999875 88899988875444468888888763221111 01100 0000
Q ss_pred ----HhhcCCeEEEEeccCCCCcchhhHHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhc-CCCeeEEEeeeEe
Q 005700 277 ----WQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKD-NEELGLVQARWSF 351 (682)
Q Consensus 277 ----~~~~~v~v~~~~r~~~~g~KagaLn~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~-~p~vg~Vqg~~~~ 351 (682)
.....++++.++...-.| -.-|.+.+.+. -.+-+|++.+||.+...++|=..++..++. ....+++++...-
T Consensus 81 ~~~~~~~~~Ir~~~~~~~~a~G-p~~AR~la~~l--~~gE~y~LqiDSH~rF~~~WD~~li~~~~~~~~~~aVLS~YP~~ 157 (343)
T PF11397_consen 81 GALCLRSDQIRVIRVDASEARG-PCWARYLAQKL--YRGEDYYLQIDSHMRFVPGWDEILIEMLKSLRNPKAVLSTYPPG 157 (343)
T ss_pred ccccccCCeEEEEEeCHHHCcC-hHHHHHHHHHH--hCCCeEEEEEeccceeeccHHHHHHHHHHhcCCCCeEEecCCCC
Confidence 011234444333333333 33444444442 467789999999999999998888877765 2344566654433
Q ss_pred ecC-C------CChHHHhhhhhhhhhhHHHHh----hc---ccccc-ccccccceEEE-EeeeehhcCCCCCCC----ch
Q 005700 352 VNK-D------ENLLTRLQDINLSFHFEVEQQ----VN---GVFIN-FFGFNGTAGVW-RIKALEDSGGWMERT----TV 411 (682)
Q Consensus 352 ~n~-~------~~l~t~~~~~~~~~~~~~~~~----~~---~~~~~-~~~~~G~~~~~-Rr~al~~iGG~~~~~----~~ 411 (682)
.+. + .+....+....+. .....+. .. ..... ...+.++++.| +-++++++ .+++.. .+
T Consensus 158 ~~~~~~~~~~~~~~~~~lc~~~~~-~~g~~~~~~~~~~~~~~~~~P~~~~f~aaGF~Fa~~~~~~eV-P~DP~lp~lF~G 235 (343)
T PF11397_consen 158 YEPDGGQPEPEKTTVPRLCAARFG-PDGMVRLGARWIKPAPKLEEPVPQPFWAAGFSFAPGHFVREV-PYDPHLPFLFDG 235 (343)
T ss_pred cccccCCccccCCcccEEEEeEEC-CCCcEeecceecccccccCCCeeeceecccEEEcchhheecC-CCCCCccccccc
Confidence 333 0 0111111111110 0000000 00 00000 11133444444 44455665 566653 48
Q ss_pred hHHHHHHHHHHcCCeEEEecCceeeec
Q 005700 412 EDMDIAVRAHLRGWKFIFLNDVECQCE 438 (682)
Q Consensus 412 ED~~l~~rl~~~G~ki~y~~~a~~~~e 438 (682)
|.+.++.|+..+||.+..-+...+++.
T Consensus 236 EE~~~aaRlwT~GYD~Y~P~~~v~~H~ 262 (343)
T PF11397_consen 236 EEISMAARLWTHGYDFYSPTRNVLFHL 262 (343)
T ss_pred HHHHHHHHHHHcCCccccCCCceeEEE
Confidence 999999999999999866666555543
No 95
>PF03214 RGP: Reversibly glycosylated polypeptide; InterPro: IPR004901 Alpha-1,4-glucan-protein synthase catalyses the reaction: protein + UDP-D-glucose = alpha-D-glucosyl-protein + UDP The enzyme has a possible role in the synthesis of cell wall polysaccharides in plants []. It is found associated with the cell wall, with the highest concentrations in the plasmodesmata. It is also located in the Golgi apparatus.; GO: 0008466 glycogenin glucosyltransferase activity, 0016758 transferase activity, transferring hexosyl groups, 0007047 cellular cell wall organization, 0030244 cellulose biosynthetic process, 0005618 cell wall, 0030054 cell junction
Probab=93.54 E-value=0.25 Score=51.94 Aligned_cols=99 Identities=13% Similarity=0.159 Sum_probs=55.6
Q ss_pred eEEEEeecCCch-HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEec---------cC
Q 005700 222 MVLVQIPMCNEK-EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHR---------IL 291 (682)
Q Consensus 222 ~VsVvIP~yNE~-~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r---------~~ 291 (682)
.|.|+||+-+.. ....+.-+.+.+ .+++|||-|+.-.....+ ..|.......+ +.
T Consensus 9 ~~divi~~~~~~l~~~~~~wr~~~~------~~hliiv~d~~~~~~~~~---------p~g~~~~~y~~~di~~~lg~~~ 73 (348)
T PF03214_consen 9 EVDIVIPALRPNLTDFLEEWRPFFS------PYHLIIVQDPDPNEEIKV---------PEGFDYEVYNRNDIERVLGAKT 73 (348)
T ss_pred cccEEeecccccHHHHHHHHHHhhc------ceeEEEEeCCCccccccC---------CcccceeeecHhhHHhhcCCcc
Confidence 488999998854 233344444443 356777777654433222 12222211111 11
Q ss_pred CCCcchhh-HHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhc
Q 005700 292 RDGYKAGN-LKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKD 338 (682)
Q Consensus 292 ~~g~Kaga-Ln~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~ 338 (682)
...+|..| .+.|+- .++.+|++.+|.|+.+..|..-..+..+.+
T Consensus 74 ~i~~~~~a~R~fGyL---~s~~~yivsiDDD~~P~~D~~g~~~~~v~q 118 (348)
T PF03214_consen 74 LIPFKGDACRNFGYL---VSKKDYIVSIDDDCLPAKDDFGTHIDAVAQ 118 (348)
T ss_pred cccccccchhhhHhh---hcccceEEEEccccccccCCccceehhhhc
Confidence 12344444 456665 578899999999999977765555444443
No 96
>KOG3916 consensus UDP-Gal:glucosylceramide beta-1,4-galactosyltransferase [Carbohydrate transport and metabolism]
Probab=93.02 E-value=0.33 Score=51.07 Aligned_cols=183 Identities=15% Similarity=0.187 Sum_probs=105.3
Q ss_pred CCCeEEEEeecCCchHHHHHHHHHHH---c-CCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCC
Q 005700 219 FFPMVLVQIPMCNEKEVYQQSIAAVC---N-LDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDG 294 (682)
Q Consensus 219 ~~P~VsVvIP~yNE~~~l~~tL~Sl~---~-qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g 294 (682)
...+|.|+||-+|.++.+...+..+. + |. -.+-|+|++...++...
T Consensus 149 ar~kvAIIIPfR~Re~HL~~~l~~LhP~LqrQr---L~y~iyVieQ~g~~~FN--------------------------- 198 (372)
T KOG3916|consen 149 ARHKVAIIIPFRNREEHLRYLLHHLHPFLQRQR---LDYRIYVIEQAGNKPFN--------------------------- 198 (372)
T ss_pred ccceeEEEeecccHHHHHHHHHHHhhHHHHhhh---hceeEEEEEecCCCccc---------------------------
Confidence 35689999999999987776666543 2 22 12446676643222211
Q ss_pred cchhhHHHHHhhcc-cCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHhhhhhhhhhhHH
Q 005700 295 YKAGNLKSAMNCSY-VKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEV 373 (682)
Q Consensus 295 ~KagaLn~gl~~~~-~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~~~~~~~~~~ 373 (682)
+|.=+|.|+..+. ....|-++|-|-|..|..|- +. ..++.+ ...+...+..+.|...+
T Consensus 199 -RakL~NVGf~eAlkd~~wdCfIFHDVDllPenDr------------Nl-Y~C~~~-----PRH~sva~dk~gy~LPY-- 257 (372)
T KOG3916|consen 199 -RAKLLNVGFLEALKDYGWDCFIFHDVDLLPENDR------------NL-YGCPEQ-----PRHMSVALDKFGYRLPY-- 257 (372)
T ss_pred -HHHhhhhHHHHHHHhcCCCEEEEecccccccCCC------------Cc-cCCCCC-----Ccchhhhhhhccccccc--
Confidence 3444566655432 35678899999998886542 10 111110 01111122222221111
Q ss_pred HHhhccccccccccccceEEEEeeeehhcCCCCCCC---chhHHHHHHHHHHcCCeEEEecCce-----eee----c--c
Q 005700 374 EQQVNGVFINFFGFNGTAGVWRIKALEDSGGWMERT---TVEDMDIAVRAHLRGWKFIFLNDVE-----CQC----E--L 439 (682)
Q Consensus 374 ~~~~~~~~~~~~~~~G~~~~~Rr~al~~iGG~~~~~---~~ED~~l~~rl~~~G~ki~y~~~a~-----~~~----e--~ 439 (682)
.+ +.|.-++..++-++++.||.... -+||-|++.|+...|++|.--+... +.+ + -
T Consensus 258 ----~~-------~FGGVsalt~~qf~kINGFsN~fWGWGGEDDDl~nRv~~ag~~IsRp~~~igrYkMikH~~k~n~~n 326 (372)
T KOG3916|consen 258 ----KE-------YFGGVSALTKEQFRKINGFSNAFWGWGGEDDDLWNRVQLAGMKISRPPPEIGRYKMIKHHDKGNEPN 326 (372)
T ss_pred ----hh-------hhCchhhccHHHHHHhcCCCchhcccCCcchHHHHHHHhcCceeecCCCccceeEEeecccccCCCC
Confidence 12 34555667888999999997753 4799999999999999875433222 112 1 1
Q ss_pred CcCHHHHHHHhHhhhchhhHHHHH
Q 005700 440 PESYEAYRKQQHRWHSGPMQLFRL 463 (682)
Q Consensus 440 p~t~~~~~~Qr~RW~~G~~~~~~~ 463 (682)
|..++-..+-..||....++.+..
T Consensus 327 ~~Ry~lL~~tk~r~~~DGLnsl~Y 350 (372)
T KOG3916|consen 327 PGRYKLLRNTKERQTQDGLNSLKY 350 (372)
T ss_pred hHHHHHHHhhhhhhhhccccceee
Confidence 333555666677787776666544
No 97
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=91.99 E-value=0.4 Score=47.36 Aligned_cols=179 Identities=18% Similarity=0.141 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHcCCCCCCceEEEEEcCCC--ChhHHHHHHHHHHHHhhcCCeEEEEeccC---CCCcchh-hHHHHHhhc
Q 005700 234 EVYQQSIAAVCNLDWPKSKILIQVLDDSD--DPTAQTLIKEEVLKWQEAGANIVYRHRIL---RDGYKAG-NLKSAMNCS 307 (682)
Q Consensus 234 ~~l~~tL~Sl~~qdYP~~~l~ViVvDD~s--dd~t~~~l~~~~~~~~~~~v~v~~~~r~~---~~g~Kag-aLn~gl~~~ 307 (682)
+.|++|-.+...+.-..-+ .++|+..+. +....+.++++.+++. .++...... +...|.- +++.+.++
T Consensus 4 ~~IR~TW~~~~~~~~~~~~-~~FvvG~~~~~~~~~~~~l~~E~~~y~----Dil~~d~~D~y~nlt~K~~~~~~w~~~~- 77 (195)
T PF01762_consen 4 QAIRETWGNQRNFKGVRVK-VVFVVGESPNSDSDLQEALQEEAEKYG----DILQGDFVDSYRNLTLKTLAGLKWASKH- 77 (195)
T ss_pred HHHHHHHhcccccCCCcEE-EEEEEecCCCCcHHHHHHhhhhhhhcC----ceEeeecccccchhhHHHHHHHHHHHhh-
Confidence 5667776665543323323 355665554 5556666666554332 223222211 2222332 33444442
Q ss_pred ccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCC-CChHHHhhhhhhhhhhHHHHhhccccccccc
Q 005700 308 YVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKD-ENLLTRLQDINLSFHFEVEQQVNGVFINFFG 386 (682)
Q Consensus 308 ~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~-~~l~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (682)
..+.+||+.+|+|+.++++-|...+.....++.-..+.|........ .+.-.++. ..........+ ...
T Consensus 78 -c~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~-------v~~~~y~~~~y-P~y- 147 (195)
T PF01762_consen 78 -CPNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWY-------VSEEEYPDDYY-PPY- 147 (195)
T ss_pred -CCchhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCce-------eeeeecccccC-CCc-
Confidence 34589999999999999988887777662122212222211111000 00000110 00000111112 112
Q ss_pred cccceEEEEeeeehhcCCC---CCCCchhHHHHHHHHHHcCCeEE
Q 005700 387 FNGTAGVWRIKALEDSGGW---MERTTVEDMDIAVRAHLRGWKFI 428 (682)
Q Consensus 387 ~~G~~~~~Rr~al~~iGG~---~~~~~~ED~~l~~rl~~~G~ki~ 428 (682)
+.|.+.++.+++++.+... .+....||..++..+.+.|.+..
T Consensus 148 ~~G~~yvls~~~v~~i~~~~~~~~~~~~eDv~iGi~~~~~~i~~~ 192 (195)
T PF01762_consen 148 CSGGGYVLSSDVVKRIYKASSHTPFFPLEDVFIGILAEKLGIKPI 192 (195)
T ss_pred CCCCeEEecHHHHHHHHHHhhcCCCCCchHHHHHHHHHHCCCCcc
Confidence 5799999999998876422 23345799999999999887654
No 98
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=91.95 E-value=2.3 Score=42.93 Aligned_cols=96 Identities=21% Similarity=0.152 Sum_probs=60.6
Q ss_pred CchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEecc---CCCCcchhhHHHHHhhc
Q 005700 231 NEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRI---LRDGYKAGNLKSAMNCS 307 (682)
Q Consensus 231 NE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~---~~~g~KagaLn~gl~~~ 307 (682)
+....+..+++++.+....+ + |+|+.| ++...+.++ +.|..+...+.+ ...-+...++..|++..
T Consensus 22 ~GkpLi~~ti~~a~~s~~~d-~--IvVstd--~~~i~~~a~-------~~g~~v~~~r~~~l~~d~~~~~~si~~~l~~l 89 (222)
T TIGR03584 22 CGKPMIAYSIEAALNSGLFD-K--VVVSTD--DEEIAEVAK-------SYGASVPFLRPKELADDFTGTAPVVKHAIEEL 89 (222)
T ss_pred CCcCHHHHHHHHHHhCCCCC-E--EEEeCC--CHHHHHHHH-------HcCCEeEEeChHHHcCCCCCchHHHHHHHHHH
Confidence 44568889999998866433 3 444333 233333322 345665543211 11123566788887743
Q ss_pred cc-CCccEEEEEcCCC-CCCHHHHHHHHHHhhc
Q 005700 308 YV-KDYEFVAIFDADF-QPNPDFLRRTVPHFKD 338 (682)
Q Consensus 308 ~~-a~~d~Vl~lDaD~-~~~pd~L~~lv~~~~~ 338 (682)
.. .+.|.|+++++|. ...++.+++++..+.+
T Consensus 90 ~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~ 122 (222)
T TIGR03584 90 KLQKQYDHACCIYATAPFLQAKILKEAFELLKQ 122 (222)
T ss_pred hhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHh
Confidence 11 3579999999999 6799999999999975
No 99
>PF11735 CAP59_mtransfer: Cryptococcal mannosyltransferase 1 ; InterPro: IPR021047 The capsule of pathogenic fungi is a complex polysaccharide whose formation is determined by a number of enzymes including, most importantly, alpha-1,3-mannosyltransferase 1 [, ]. It is responsible for addition of mannose residues in an alpha-1,3 linkage to a polymannosly precursor.
Probab=91.86 E-value=2.6 Score=43.07 Aligned_cols=122 Identities=9% Similarity=0.100 Sum_probs=76.6
Q ss_pred EEEeecCCchHHHHHHHH-HHHc--CCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCC-------
Q 005700 224 LVQIPMCNEKEVYQQSIA-AVCN--LDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRD------- 293 (682)
Q Consensus 224 sVvIP~yNE~~~l~~tL~-Sl~~--qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~------- 293 (682)
-|-.-.||.++.+..... ++++ .-..++.+-|.|++++|.|.|.+.++.....+...|++-.+...+..+
T Consensus 3 fIA~~l~~~~~iL~~~~~~~ll~li~~LGp~nv~vSIyE~~S~D~T~~~L~~L~~~L~~lgv~~~i~~~~~~~~~~~~~~ 82 (241)
T PF11735_consen 3 FIAANLYNNEDILPSLWGDALLELIRFLGPENVFVSIYESGSWDGTKEALRALDAELDALGVPHSIVLSDITHRDEIERP 82 (241)
T ss_pred EEEEEcccCHhHHHHHHHHHHHHHHHHhCcCeEEEEEEeCCCCccHHHHHHHHHHHHHhCCCCeEEEeCCCccccccccc
Confidence 344456777776665555 4444 122345777889999999999999998887777888876655422211
Q ss_pred ------CcchhhHHHHHhhcc------cCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEe
Q 005700 294 ------GYKAGNLKSAMNCSY------VKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQA 347 (682)
Q Consensus 294 ------g~KagaLn~gl~~~~------~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg 347 (682)
.+-|.-.|.+++=.+ ..+.|-|++++ |....+.-+.+++..-.. .+.+++++
T Consensus 83 ~~~~RI~~LA~lRN~ALePL~~~~~~~~~~fd~VlfLN-DV~f~~~Dil~LL~~~~~-~~~~~aCa 146 (241)
T PF11735_consen 83 PRLRRIEYLAELRNRALEPLYDLARKRGRRFDKVLFLN-DVFFCPEDILELLFTRNR-GNYDMACA 146 (241)
T ss_pred chhhhHHHHHHHHhHHHHHHHhhhhccCCCcCEEEEec-CcccCHHHHHHHHhhcCc-ccccchhh
Confidence 112344566665322 34567899999 888887766666665431 23444443
No 100
>KOG1413 consensus N-acetylglucosaminyltransferase I [Carbohydrate transport and metabolism]
Probab=91.51 E-value=1.7 Score=46.14 Aligned_cols=176 Identities=17% Similarity=0.183 Sum_probs=105.6
Q ss_pred CCCCeEEEEeecCCchHHHHHHHHHHHcCCCC-CCceEEEEEcCCCChhHHHHHHHHHHHHh------hcCCeEEEEecc
Q 005700 218 GFFPMVLVQIPMCNEKEVYQQSIAAVCNLDWP-KSKILIQVLDDSDDPTAQTLIKEEVLKWQ------EAGANIVYRHRI 290 (682)
Q Consensus 218 ~~~P~VsVvIP~yNE~~~l~~tL~Sl~~qdYP-~~~l~ViVvDD~sdd~t~~~l~~~~~~~~------~~~v~v~~~~r~ 290 (682)
+..|.+.|++=++|..+.++++++.++.+. | .+++.|+|.-|+++..+...++....... .....+.+..++
T Consensus 64 ~~~~v~pvvVf~csR~~~lr~~v~kll~yr-PsaekfpiiVSQD~~~e~vk~~~~~~g~~v~~i~~~~h~~~ei~v~~~~ 142 (411)
T KOG1413|consen 64 NWPPVIPVVVFACSRADALRRHVKKLLEYR-PSAEKFPIIVSQDCEKEAVKKKLLSYGSDVSHIQHPMHLKDEISVPPRH 142 (411)
T ss_pred CCCCceeEEEEecCcHHHHHHHHHHHHHhC-cchhhcCEEEeccCCcHHHHHHHHHhccchhhhcCccccccccccCCcc
Confidence 446678899999999999999999999977 5 45677899999999888877765422110 011122211111
Q ss_pred C-CCCcchh------hHHHHHhhcccCCccEEEEEcCCCCCCHHHHHH---HHHHhhcCCCeeEEEeeeEeecCCCChHH
Q 005700 291 L-RDGYKAG------NLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRR---TVPHFKDNEELGLVQARWSFVNKDENLLT 360 (682)
Q Consensus 291 ~-~~g~Kag------aLn~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~---lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t 360 (682)
. .++++.- |+|+.+. ..+++.+++.-+|.-..|||... ....++.+|.+-+|+.- -.|..+..+.
T Consensus 143 ~k~~~Yy~IarHYkwAL~q~F~---~~~~s~vii~eDDl~iapDFF~YF~~t~~llk~D~siwcvsaW--NDNGk~~~Id 217 (411)
T KOG1413|consen 143 KKFNAYYKIARHYKWALNQLFI---VFRESRVIITEDDLNIAPDFFSYFRNTIILLKGDPSIWCVSAW--NDNGKKQTID 217 (411)
T ss_pred cccchhHHHHHHHHHHHhhHHh---hcCCceeEEecchhhhhhHHHHHHHHHHHHHhcCCceEEeeee--ccCCCccccc
Confidence 1 1233322 3444443 56789999999999999987654 45566668887776542 1233222111
Q ss_pred HhhhhhhhhhhHHHHhhccccccccccccceEEEEeeeehhcC-CCCCCCchhHH
Q 005700 361 RLQDINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEDSG-GWMERTTVEDM 414 (682)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~iG-G~~~~~~~ED~ 414 (682)
.-+ .+.....-.+.|-+-|+.++.++|.. +|+. .+-||+
T Consensus 218 ~~~--------------~~~lYRtDFFpGLGWml~~~~W~ELsp~wP~-~fWDDW 257 (411)
T KOG1413|consen 218 STR--------------PSLLYRTDFFPGLGWMLTKKLWEELSPKWPV-AFWDDW 257 (411)
T ss_pred ccc--------------cchhhhccccccchHHHHHHHHHhhCCCCcc-cchhhh
Confidence 000 00011111267777788888888765 4543 355654
No 101
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=90.87 E-value=0.79 Score=47.97 Aligned_cols=105 Identities=14% Similarity=0.076 Sum_probs=69.3
Q ss_pred CeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEecc--CCCC----
Q 005700 221 PMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRI--LRDG---- 294 (682)
Q Consensus 221 P~VsVvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~--~~~g---- 294 (682)
-.++-.|-+.||++.++++|+|++..- ++ .++.-+.++|+|.+++.+.++++++ -+.+.|-... .+..
T Consensus 87 l~~~~~iRvKnE~~tl~~si~S~Lpai---~~--gVI~yNdc~D~t~Eiil~fckkyP~-fip~~Ypy~v~~~n~~~~~n 160 (347)
T PF06306_consen 87 LNPWAFIRVKNEAMTLAESIESILPAI---DE--GVIGYNDCTDGTEEIILEFCKKYPS-FIPIKYPYEVIIKNPKSEEN 160 (347)
T ss_pred CCcceEEEEcchhhhHHHHHHHHHHHH---hc--cEEEeecCCCCHHHHHHHHHHhCcc-cccccCcchhhccCCchhhh
Confidence 346778999999999999999998621 13 3345555677789999999998875 3444442211 1111
Q ss_pred cchhhHHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHH
Q 005700 295 YKAGNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTV 333 (682)
Q Consensus 295 ~KagaLn~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv 333 (682)
....=.|.++. ...+++|++=+|+|.+.++.-|-+.-
T Consensus 161 ~l~~YYNy~ls--~ipk~~w~iKID~DhIy~~~KL~ksf 197 (347)
T PF06306_consen 161 SLYNYYNYVLS--FIPKNEWAIKIDADHIYDTKKLYKSF 197 (347)
T ss_pred hhhhhhhhhhc--ccccceEEEEeccceeecHHHHhhhh
Confidence 11122233433 24679999999999999998875443
No 102
>PLN02458 transferase, transferring glycosyl groups
Probab=90.72 E-value=3.8 Score=43.29 Aligned_cols=105 Identities=10% Similarity=0.048 Sum_probs=64.1
Q ss_pred CCCCeEEEEeecCCc-h---HHHHHHHHHHHcCCCCCCceEEEEEcCCC-ChhHHHHHHHHHHHHhhcCCeEEEEeccCC
Q 005700 218 GFFPMVLVQIPMCNE-K---EVYQQSIAAVCNLDWPKSKILIQVLDDSD-DPTAQTLIKEEVLKWQEAGANIVYRHRILR 292 (682)
Q Consensus 218 ~~~P~VsVvIP~yNE-~---~~l~~tL~Sl~~qdYP~~~l~ViVvDD~s-dd~t~~~l~~~~~~~~~~~v~v~~~~r~~~ 292 (682)
...+.|-||-|+|.. . ..+.+.-..+..-.+| +.=|||+|+. .+.+.++++ +-|+...++.-..+
T Consensus 109 ~~~rlIivVTPTY~rR~~Q~a~LTRLahTL~lVp~p---L~WIVVEd~~~t~~va~lLr-------rsGl~y~HL~~k~~ 178 (346)
T PLN02458 109 APRRLVIIVTPISTKDRYQGVLLRRLANTLRLVPPP---LLWIVVEGQSDSEEVSEMLR-------KTGIMYRHLVFKEN 178 (346)
T ss_pred CCCceEEEECCCCCCcchhHHHHHHHHHHHhcCCCC---ceEEEEeCCCCCHHHHHHHH-------HcCCceEEeccCCC
Confidence 345679999999983 3 3444444444443322 4556777754 444555544 56777666543322
Q ss_pred C----CcchhhHHHHHhhccc-CCccEEEEEcCCCCCCHHHHHHH
Q 005700 293 D----GYKAGNLKSAMNCSYV-KDYEFVAIFDADFQPNPDFLRRT 332 (682)
Q Consensus 293 ~----g~KagaLn~gl~~~~~-a~~d~Vl~lDaD~~~~pd~L~~l 332 (682)
. +......|.|+++... ...-+|.|-|+|...+-+..+++
T Consensus 179 ~~~~~~r~~~QRN~AL~~IR~h~l~GVVyFADDdNtYsl~LFeEm 223 (346)
T PLN02458 179 FTDPEAELDHQRNLALRHIEHHKLSGIVHFAGLSNVYDLDFFDEI 223 (346)
T ss_pred CCCccchhHHHHHHHHHHHHhcCcCceEEEccCCCcccHHHHHHH
Confidence 1 2224568889887522 23458899999999988877774
No 103
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=90.15 E-value=1.1 Score=46.22 Aligned_cols=103 Identities=14% Similarity=0.165 Sum_probs=60.1
Q ss_pred EEEeec-CCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHH
Q 005700 224 LVQIPM-CNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKS 302 (682)
Q Consensus 224 sVvIP~-yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~ 302 (682)
+|+|-+ |+..+.+.+.|.++.+..+-. ++.|+-.++...+.. .++...++.+.++.... ..+|.
T Consensus 2 Tvvi~t~~~R~~~L~~~l~~l~~~~~l~-~IvVvWn~~~~~P~~--------~~~~~~~vpV~~~~~~~------nsLnn 66 (247)
T PF09258_consen 2 TVVINTSYKRSDLLKRLLRHLASSPSLR-KIVVVWNNPNPPPPS--------SKWPSTGVPVRVVRSSR------NSLNN 66 (247)
T ss_dssp EEEEEE-SS-HHHHHHHHHHHTTSTTEE-EEEEEEE-TS--THH--------HHHT---S-EEEEEESS------HHGGG
T ss_pred EEEEEecccchHHHHHHHHHHHcCCCCC-eEEEEeCCCCCCCcc--------cccCCCCceEEEEecCC------ccHHh
Confidence 688888 999999999999997665432 433333332222222 23445567777664222 12222
Q ss_pred HHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCC
Q 005700 303 AMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEE 341 (682)
Q Consensus 303 gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~ 341 (682)
-+.-...-+.|-|+.+|+|..++++.|+..-...+++|+
T Consensus 67 RF~p~~~i~T~AVl~~DDDv~~~~~~l~faF~~W~~~pd 105 (247)
T PF09258_consen 67 RFLPDPEIETDAVLSLDDDVMLSCDELEFAFQVWREFPD 105 (247)
T ss_dssp GGS--TT--SSEEEEEETTEEE-HHHHHHHHHHHCCSTT
T ss_pred cCcCccccCcceEEEecCCcccCHHHHHHHHHHHHhChh
Confidence 222111457899999999999999999999888888776
No 104
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=89.94 E-value=4.3 Score=40.81 Aligned_cols=101 Identities=15% Similarity=0.138 Sum_probs=64.7
Q ss_pred CeEEEEeecCCch---HHHHHHHHHHHcCCCCCCceEEEEEcCCC--ChhHHHHHHHHHHHHhhcCCeEEEEeccCC---
Q 005700 221 PMVLVQIPMCNEK---EVYQQSIAAVCNLDWPKSKILIQVLDDSD--DPTAQTLIKEEVLKWQEAGANIVYRHRILR--- 292 (682)
Q Consensus 221 P~VsVvIP~yNE~---~~l~~tL~Sl~~qdYP~~~l~ViVvDD~s--dd~t~~~l~~~~~~~~~~~v~v~~~~r~~~--- 292 (682)
|.+-||-|+|... ..+.+.-..+.-- | .+.=|||+|+. ++.+.++++ +-|+...+..-..+
T Consensus 1 p~i~vVTPTy~R~~Q~~~LtRLa~TL~lV--p--~l~WIVVEd~~~~t~~va~lL~-------~sgl~y~HL~~~~~~~~ 69 (223)
T cd00218 1 PTIYVVTPTYARPVQKAELTRLAHTLRLV--P--PLHWIVVEDSEEKTPLVAELLR-------RSGLMYTHLNAKTPSDP 69 (223)
T ss_pred CeEEEECCCCccchhhHHHHHHHHHHhcC--C--ceEEEEEeCCCCCCHHHHHHHH-------HcCCceEEeccCCCCCc
Confidence 5788999999987 3344444444433 3 36667888865 555666655 56777666643322
Q ss_pred CCc---chhhHHHHHhhccc----CCccEEEEEcCCCCCCHHHHHHH
Q 005700 293 DGY---KAGNLKSAMNCSYV----KDYEFVAIFDADFQPNPDFLRRT 332 (682)
Q Consensus 293 ~g~---KagaLn~gl~~~~~----a~~d~Vl~lDaD~~~~pd~L~~l 332 (682)
+.. -....|.|+++... ...-+|.|-|+|...+-+..+++
T Consensus 70 ~~~~~rg~~qRn~AL~~ir~~~~~~~~GVVyFADDdN~Ysl~lF~em 116 (223)
T cd00218 70 TWLKPRGVEQRNLALRWIREHLSAKLDGVVYFADDDNTYDLELFEEM 116 (223)
T ss_pred ccCCcccHHHHHHHHHHHHhccccCcceEEEEccCCCcccHHHHHHH
Confidence 111 23367888887522 34468999999999998888773
No 105
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=89.60 E-value=0.91 Score=46.89 Aligned_cols=110 Identities=16% Similarity=0.075 Sum_probs=56.2
Q ss_pred cCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHhhhhhhhhhhHHHHhhccccccccccc
Q 005700 309 VKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGVFINFFGFN 388 (682)
Q Consensus 309 ~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (682)
..+.|+.+++|+|+.+..+-|.+++..+. |+-...-|........+. ..+.... . .......++-.
T Consensus 84 ~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~--~~~~~yiG~~~~~~~~~~-~~~~~~~--------~---~~~~~~~f~~G 149 (252)
T PF02434_consen 84 NSDKDWFCFADDDTYVNVENLRRLLSKYD--PSEPIYIGRPSGDRPIEI-IHRFNPN--------K---SKDSGFWFATG 149 (252)
T ss_dssp HHT-SEEEEEETTEEE-HHHHHHHHTTS---TTS--EEE-EE----------------------------------EE-G
T ss_pred cCCceEEEEEeCCceecHHHHHHHHhhCC--CccCEEeeeeccCcccee-ecccccc--------c---cCcCceEeeCC
Confidence 45779999999999999999999998874 443344443322211110 0000000 0 00001122356
Q ss_pred cceEEEEeeeehhcC------CCCCC----CchhHHHHHHHHHH-cCCeEEEecC
Q 005700 389 GTAGVWRIKALEDSG------GWMER----TTVEDMDIAVRAHL-RGWKFIFLND 432 (682)
Q Consensus 389 G~~~~~Rr~al~~iG------G~~~~----~~~ED~~l~~rl~~-~G~ki~y~~~ 432 (682)
|++.++.|.+++++. .+... ...||+.++..+.. .|.+....+.
T Consensus 150 GaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~ 204 (252)
T PF02434_consen 150 GAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPL 204 (252)
T ss_dssp GG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT
T ss_pred CeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechh
Confidence 899999999999883 22221 34799999999998 8988877653
No 106
>KOG1476 consensus Beta-1,3-glucuronyltransferase B3GAT1/SQV-8 [Posttranslational modification, protein turnover, chaperones]
Probab=89.16 E-value=4.9 Score=42.11 Aligned_cols=105 Identities=15% Similarity=0.180 Sum_probs=70.7
Q ss_pred CCeEEEEeecCCch---HHHHHHHHHHHcCCCCCCceEEEEEcCC--CChhHHHHHHHHHHHHhhcCCeEEEEeccCCCC
Q 005700 220 FPMVLVQIPMCNEK---EVYQQSIAAVCNLDWPKSKILIQVLDDS--DDPTAQTLIKEEVLKWQEAGANIVYRHRILRDG 294 (682)
Q Consensus 220 ~P~VsVvIP~yNE~---~~l~~tL~Sl~~qdYP~~~l~ViVvDD~--sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g 294 (682)
.|.|-||-|+|+.. ..+.+.-..+.. -| .++=+||+|+ ..+.+..+++ .-|+...|.....+.+
T Consensus 86 ~~~iivVTPTY~R~~q~~~LtRlanTL~~--V~--nLhWIVVEd~~~~~p~v~~~L~-------rtgl~ythl~~~t~~~ 154 (330)
T KOG1476|consen 86 LPTIIVVTPTYVRPVQAAELTRLANTLRL--VP--NLHWIVVEDGEGTTPEVSGILR-------RTGLPYTHLVHKTPMG 154 (330)
T ss_pred CccEEEEcccccchhHHHHHHHHHHHHhh--cC--CeeEEEEecCCCCCHHHHHHHH-------HcCCceEEEeccCCCC
Confidence 78999999999997 233333333332 24 3666788886 4666666665 5788888887777777
Q ss_pred cc----hhhHHHHHhhcc-----c-CCccEEEEEcCCCCCCHHHHHHHHHHh
Q 005700 295 YK----AGNLKSAMNCSY-----V-KDYEFVAIFDADFQPNPDFLRRTVPHF 336 (682)
Q Consensus 295 ~K----agaLn~gl~~~~-----~-a~~d~Vl~lDaD~~~~pd~L~~lv~~~ 336 (682)
+| -...|.|++... . +..-+|.|-|+|...+-+...+ ++..
T Consensus 155 ~~~~rg~~qRn~aL~~ir~~~~~~~~~~GVVyFADDdN~YdleLF~e-iR~v 205 (330)
T KOG1476|consen 155 YKARRGWEQRNMALRWIRSRILRHHKLEGVVYFADDDNTYDLELFEE-IRNV 205 (330)
T ss_pred CccccchhHHHHHHHHHHHhcccccccceEEEEccCCcchhHHHHHH-Hhcc
Confidence 67 346777877642 2 3345788889999988877777 4433
No 107
>PLN02917 CMP-KDO synthetase
Probab=88.16 E-value=9.6 Score=40.27 Aligned_cols=184 Identities=14% Similarity=0.087 Sum_probs=91.5
Q ss_pred hHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhhcccCCc
Q 005700 233 KEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVKDY 312 (682)
Q Consensus 233 ~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~~~~a~~ 312 (682)
...+..+++.+.+.. +.+. |+|..| ++...+.++ ..++.++...... .++-.++ ..+++.. ..+.
T Consensus 72 kPLL~~vi~~a~~~~-~~~~--VVV~~~--~e~I~~~~~-------~~~v~vi~~~~~~-~~GT~~~-~~a~~~l-~~~~ 136 (293)
T PLN02917 72 KPMIQRTWERAKLAT-TLDH--IVVATD--DERIAECCR-------GFGADVIMTSESC-RNGTERC-NEALKKL-EKKY 136 (293)
T ss_pred EEHHHHHHHHHHcCC-CCCE--EEEECC--hHHHHHHHH-------HcCCEEEeCCccc-CCchHHH-HHHHHhc-cCCC
Confidence 457888888887654 2222 444432 344433332 3455554322222 3334444 4666642 2347
Q ss_pred cEEEEEcCCC-CCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHhh---h--hh-hhhhhH-H-H-Hhhccccc
Q 005700 313 EFVAIFDADF-QPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQ---D--IN-LSFHFE-V-E-QQVNGVFI 382 (682)
Q Consensus 313 d~Vl~lDaD~-~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~---~--~~-~~~~~~-~-~-~~~~~~~~ 382 (682)
|+|+++++|. .++++.+++++..+.++++..+.+....+...+..-..+.. + -. ..+... . + +.....-.
T Consensus 137 d~Vlil~gD~PlI~~~tI~~li~~~~~~~~~iv~t~~~~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~~~~~~ 216 (293)
T PLN02917 137 DIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSGKVNPQ 216 (293)
T ss_pred CEEEEecCCcCCCCHHHHHHHHHHHHhcCCceEEEEeeecCHHHhcCCCceEEEECCCCeEEEeecCcCCcCCCcccccc
Confidence 8999999999 68999999999988765554443331211111101111110 0 00 000000 0 0 00000000
Q ss_pred cccccccceEEEEeeeehhcCCCCCCCc-hhHHHHHHHHHHcCCeEEEec
Q 005700 383 NFFGFNGTAGVWRIKALEDSGGWMERTT-VEDMDIAVRAHLRGWKFIFLN 431 (682)
Q Consensus 383 ~~~~~~G~~~~~Rr~al~~iGG~~~~~~-~ED~~l~~rl~~~G~ki~y~~ 431 (682)
...-.+..-.+||++.+.....+..... .|-.-.-+++..+|+++..++
T Consensus 217 ~i~~~n~Giy~f~~~~L~~l~~l~~~n~e~e~yLtdl~~le~G~~i~~~~ 266 (293)
T PLN02917 217 FPYLLHLGIQSYDAKFLKIYPELPPTPLQLEEDLEQLKVLENGYKMKVIK 266 (293)
T ss_pred cceEEEEEEEEeCHHHHHHHHcCCCCcccchhccHHHHHHhCCCceEEEE
Confidence 1111355567889998887665544422 232222235779999987665
No 108
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=85.86 E-value=9.4 Score=36.54 Aligned_cols=94 Identities=14% Similarity=0.152 Sum_probs=56.4
Q ss_pred CchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhhcccC
Q 005700 231 NEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVK 310 (682)
Q Consensus 231 NE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~~~~a 310 (682)
+....++.+++.+.+.. .++ |+|+-+...+...+.+ ...++.+ ...+....+-..++..|++... .
T Consensus 24 ~g~~li~~~i~~l~~~~--~~~--i~vv~~~~~~~~~~~~-------~~~~~~~--~~~~~~~~G~~~~i~~al~~~~-~ 89 (186)
T cd04182 24 DGKPLLRHALDAALAAG--LSR--VIVVLGAEADAVRAAL-------AGLPVVV--VINPDWEEGMSSSLAAGLEALP-A 89 (186)
T ss_pred CCeeHHHHHHHHHHhCC--CCc--EEEECCCcHHHHHHHh-------cCCCeEE--EeCCChhhCHHHHHHHHHHhcc-c
Confidence 44568888888887752 224 3444332222222111 1223332 2222222336777888888531 1
Q ss_pred CccEEEEEcCCC-CCCHHHHHHHHHHhhc
Q 005700 311 DYEFVAIFDADF-QPNPDFLRRTVPHFKD 338 (682)
Q Consensus 311 ~~d~Vl~lDaD~-~~~pd~L~~lv~~~~~ 338 (682)
+.|+++++++|+ .++++.+++++..+.+
T Consensus 90 ~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 118 (186)
T cd04182 90 DADAVLILLADQPLVTAETLRALIDAFRE 118 (186)
T ss_pred cCCEEEEEeCCCCCCCHHHHHHHHHHHHh
Confidence 479999999999 7899999999988864
No 109
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=85.43 E-value=12 Score=36.53 Aligned_cols=102 Identities=17% Similarity=0.092 Sum_probs=58.4
Q ss_pred CchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhhcccC
Q 005700 231 NEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVK 310 (682)
Q Consensus 231 NE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~~~~a 310 (682)
+....++.+++.+.+... ++ |+|+-+...+......+... ...++.++... ....| ...++..|++.....
T Consensus 24 ~g~~ll~~~i~~~~~~~~--~~--i~vv~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~G-~~~si~~gl~~~~~~ 94 (190)
T TIGR03202 24 GETTLGSASLKTALSSRL--SK--VIVVIGEKYAHLSWLDPYLL---ADERIMLVCCR-DACEG-QAHSLKCGLRKAEAM 94 (190)
T ss_pred CCccHHHHHHHHHHhCCC--Cc--EEEEeCCccchhhhhhHhhh---cCCCeEEEECC-Chhhh-HHHHHHHHHHHhccC
Confidence 556788888877765322 23 44444433322211111110 12234433221 11223 567788888753223
Q ss_pred CccEEEEEcCCC-CCCHHHHHHHHHHhhcCCC
Q 005700 311 DYEFVAIFDADF-QPNPDFLRRTVPHFKDNEE 341 (682)
Q Consensus 311 ~~d~Vl~lDaD~-~~~pd~L~~lv~~~~~~p~ 341 (682)
+.|+++++++|. .++++.+++++..+..+++
T Consensus 95 ~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~ 126 (190)
T TIGR03202 95 GADAVVILLADQPFLTADVINALLALAKRRPD 126 (190)
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHhhCCC
Confidence 579999999999 7899999999998865443
No 110
>KOG4179 consensus Lysyl hydrolase/glycosyltransferase family 25 [Posttranslational modification, protein turnover, chaperones]
Probab=85.41 E-value=1.5 Score=47.09 Aligned_cols=111 Identities=18% Similarity=0.110 Sum_probs=74.1
Q ss_pred CeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccC------CCC
Q 005700 221 PMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRIL------RDG 294 (682)
Q Consensus 221 P~VsVvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~------~~g 294 (682)
|.|.|.+-.+|-...+.--+..+-++|||..+.-|++--|.+.|.+.++.++..+........+.+..... .+|
T Consensus 3 ptvl~alL~rn~ah~lp~Flg~le~~Dypk~r~aiw~~~dh~~d~~ie~freWL~nv~~~y~~V~~e~~~e~~s~~d~~~ 82 (568)
T KOG4179|consen 3 PTVLCALLFRNFAHSLPLFLGELEEGDYPKIRPAIWIGVDHEHDHAIEYFREWLENVGDLYHRVKWEPFIEPKSYPDEHG 82 (568)
T ss_pred ceeehHHHHHHHHhhhhhccCChhccCCcccccceEEecCccccchHHHHHHHHHhcCCccceeEEEecCCccccCcccC
Confidence 45666666677766666666667789999999889998888888888888877765555555555553322 123
Q ss_pred cc--------------hhhHHHHHhhcccCCccEEEEEcCCCCC-CHHHHHHHHHH
Q 005700 295 YK--------------AGNLKSAMNCSYVKDYEFVAIFDADFQP-NPDFLRRTVPH 335 (682)
Q Consensus 295 ~K--------------agaLn~gl~~~~~a~~d~Vl~lDaD~~~-~pd~L~~lv~~ 335 (682)
.| -.|+|.+= ..-.||+++.|.|+.+ .+|.|.-++..
T Consensus 83 pk~W~~sr~q~lm~lKeea~~~~r----~~~adyilf~d~d~lLts~dTl~llm~l 134 (568)
T KOG4179|consen 83 PKHWPDSRFQHLMSLKEEALNWAR----SGWADYILFKDEDNLLTSGDTLPLLMNL 134 (568)
T ss_pred CccCchHHHHHHHHHHHHHHHHHH----hhhcceeEEeehhheeeCCchHhHHHhc
Confidence 22 12333322 2447999999999965 67777666544
No 111
>PF02364 Glucan_synthase: 1,3-beta-glucan synthase component ; InterPro: IPR003440 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase 48 family GT48 from CAZY, which consists of various 1,3-beta-glucan synthase components including Gls1, Gls2 and Gls3 from yeast. 1,3-beta-glucan synthase (2.4.1.34 from EC) also known as callose synthase catalyses the formation of a beta-1,3-glucan polymer that is a major component of the fungal cell wall []. The reaction catalysed is:- UDP-glucose + {1,3-beta-D-glucosyl}(N) = UDP + {1,3-beta-D-glucosyl}(N+1).; GO: 0003843 1,3-beta-D-glucan synthase activity, 0006075 1,3-beta-D-glucan biosynthetic process, 0000148 1,3-beta-D-glucan synthase complex, 0016020 membrane
Probab=85.11 E-value=6.1 Score=46.90 Aligned_cols=160 Identities=15% Similarity=0.163 Sum_probs=88.5
Q ss_pred cchhhHHHHHhhcccCCccEEEEEcCCC--CCCH-HHHHHHHHHhhc-----------------CCCeeEEEeeeEeecC
Q 005700 295 YKAGNLKSAMNCSYVKDYEFVAIFDADF--QPNP-DFLRRTVPHFKD-----------------NEELGLVQARWSFVNK 354 (682)
Q Consensus 295 ~KagaLn~gl~~~~~a~~d~Vl~lDaD~--~~~p-d~L~~lv~~~~~-----------------~p~vg~Vqg~~~~~n~ 354 (682)
||..|-|+++- -.+||++-.+|+.- .++. =-+++++..|+. .+.+.++..+......
T Consensus 275 GK~eNQNhaii---F~rGe~lQ~IDmNQDnYleE~lK~rnlL~Ef~~~~~~~~~~~~~~~~~~~~~~~aIlG~RE~IFs~ 351 (817)
T PF02364_consen 275 GKPENQNHAII---FTRGEYLQTIDMNQDNYLEEALKMRNLLEEFEEMHGDSSSPYIPGIEEEGKRPVAILGFREHIFSE 351 (817)
T ss_pred CCccccceeEE---EEccccccccccchhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCceEecccceEecC
Confidence 69999999987 47999999999953 3221 223566677764 1345667666655554
Q ss_pred CCChHHHhhh-hhhhhhhHHHHhhccccccccccccceEEEEeeeehhcCCCCC----CCchhHHHHHHHHHHcCCeEEE
Q 005700 355 DENLLTRLQD-INLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEDSGGWME----RTTVEDMDIAVRAHLRGWKFIF 429 (682)
Q Consensus 355 ~~~l~t~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~iGG~~~----~~~~ED~~l~~rl~~~G~ki~y 429 (682)
+-+.+..... -|..+.-...+...... .- .--|+-=++.+-....-||-.. -++.||..-++-...+|.++.+
T Consensus 352 ~vg~L~~~aa~qE~~F~Tl~qR~la~p~-~r-lHYGHPD~~n~~f~~TRGGvSKAsk~lhLsEDIfaG~n~~lRGG~i~h 429 (817)
T PF02364_consen 352 NVGSLGDFAAGQEQSFGTLFQRTLANPL-VR-LHYGHPDVFNRIFMTTRGGVSKASKGLHLSEDIFAGMNATLRGGRIKH 429 (817)
T ss_pred CcchHHHHhhhhhHHHHHHHHHHHhcch-hh-ccCCCchhhhhhheeccCccchHhhcccccHHHHHHHHHHhcCCceee
Confidence 4333322211 11111111111111111 00 0223333344444444466543 2789999999999999999999
Q ss_pred ecCceeeeccCcCHHHHHHHhHhhhchhhH
Q 005700 430 LNDVECQCELPESYEAYRKQQHRWHSGPMQ 459 (682)
Q Consensus 430 ~~~a~~~~e~p~t~~~~~~Qr~RW~~G~~~ 459 (682)
+.-..|--.-...+.+...=..+=+.|.-+
T Consensus 430 ~ey~qcGKGRD~Gf~~I~~F~~KI~~G~GE 459 (817)
T PF02364_consen 430 CEYIQCGKGRDVGFNSILNFETKIASGMGE 459 (817)
T ss_pred hhhhhcccccccCchhhhhhHhHhcCCccc
Confidence 887765333344455544444555666443
No 112
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=82.82 E-value=10 Score=35.59 Aligned_cols=101 Identities=16% Similarity=0.239 Sum_probs=64.4
Q ss_pred eecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhh
Q 005700 227 IPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNC 306 (682)
Q Consensus 227 IP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~ 306 (682)
+|. +....++.+++.+.+... ++ |+|+-.. +...+.+ ...+++++.. .....+-..++..|++.
T Consensus 19 ~~i-~g~~li~~~l~~l~~~~~--~~--Ivvv~~~--~~~~~~~-------~~~~~~~v~~--~~~~~G~~~sl~~a~~~ 82 (160)
T PF12804_consen 19 LPI-GGKPLIERVLEALREAGV--DD--IVVVTGE--EEIYEYL-------ERYGIKVVVD--PEPGQGPLASLLAALSQ 82 (160)
T ss_dssp SEE-TTEEHHHHHHHHHHHHTE--SE--EEEEEST--HHHHHHH-------TTTTSEEEE---STSSCSHHHHHHHHHHT
T ss_pred eeE-CCccHHHHHHHHhhccCC--ce--EEEecCh--HHHHHHH-------hccCceEEEe--ccccCChHHHHHHHHHh
Confidence 455 666788888888877642 24 4445443 3332222 2456666543 22224477888888884
Q ss_pred cccCCccEEEEEcCCC-CCCHHHHHHHHHHhhcCC-CeeEE
Q 005700 307 SYVKDYEFVAIFDADF-QPNPDFLRRTVPHFKDNE-ELGLV 345 (682)
Q Consensus 307 ~~~a~~d~Vl~lDaD~-~~~pd~L~~lv~~~~~~p-~vg~V 345 (682)
..+.+.++++.+|. .++++.+++++..+.+++ ++.++
T Consensus 83 --~~~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~ 121 (160)
T PF12804_consen 83 --LPSSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVP 121 (160)
T ss_dssp --STTSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEE
T ss_pred --cccCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEE
Confidence 22899999999999 579999999999987533 44433
No 113
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=82.28 E-value=16 Score=35.16 Aligned_cols=97 Identities=13% Similarity=0.145 Sum_probs=56.8
Q ss_pred CchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhhcccC
Q 005700 231 NEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVK 310 (682)
Q Consensus 231 NE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~~~~a 310 (682)
+....+..+++.+.+.. .+++ ++|+.+.. +. ..+...+ ..++.++ .......+-..++..|++. ..
T Consensus 23 ~g~pll~~~i~~l~~~~--~~~i-ivv~~~~~-~~---~~~~~~~---~~~v~~v--~~~~~~~g~~~si~~~l~~--~~ 88 (188)
T TIGR03310 23 KGKTILEHVVDNALRLF--FDEV-ILVLGHEA-DE---LVALLAN---HSNITLV--HNPQYAEGQSSSIKLGLEL--PV 88 (188)
T ss_pred CCeeHHHHHHHHHHHcC--CCcE-EEEeCCcH-HH---HHHHhcc---CCCeEEE--ECcChhcCHHHHHHHHhcC--CC
Confidence 44568888888887653 2243 33444432 22 1121111 2234433 2322212356677777762 34
Q ss_pred CccEEEEEcCCC-CCCHHHHHHHHHHhhcCCC
Q 005700 311 DYEFVAIFDADF-QPNPDFLRRTVPHFKDNEE 341 (682)
Q Consensus 311 ~~d~Vl~lDaD~-~~~pd~L~~lv~~~~~~p~ 341 (682)
+.|.++++++|. .++++.+++++..+..+++
T Consensus 89 ~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~ 120 (188)
T TIGR03310 89 QSDGYLFLLGDQPFVTPDIIQLLLEAFALKND 120 (188)
T ss_pred CCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCC
Confidence 578999999999 6799999999988765444
No 114
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=81.17 E-value=18 Score=36.01 Aligned_cols=96 Identities=15% Similarity=0.204 Sum_probs=59.0
Q ss_pred eecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhh
Q 005700 227 IPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNC 306 (682)
Q Consensus 227 IP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~ 306 (682)
+|.-+ ...+..+++++.+..- .++.| |+ ....+...+.+. ..++.+ .......| .++++..++..
T Consensus 21 ~~v~g-kpli~~~i~~l~~~~i--~~i~i-v~-~~~~~~i~~~~~-------~~~~~~--~~~~~~~g-~~~ai~~a~~~ 85 (229)
T cd02540 21 HPLAG-KPMLEHVLDAARALGP--DRIVV-VV-GHGAEQVKKALA-------NPNVEF--VLQEEQLG-TGHAVKQALPA 85 (229)
T ss_pred ceeCC-ccHHHHHHHHHHhCCC--CeEEE-EE-CCCHHHHHHHhC-------CCCcEE--EECCCCCC-CHHHHHHHHHh
Confidence 44444 4788899999987542 24333 33 222333332221 234443 33333334 78888888875
Q ss_pred cccCCccEEEEEcCCC-CCCHHHHHHHHHHhhc
Q 005700 307 SYVKDYEFVAIFDADF-QPNPDFLRRTVPHFKD 338 (682)
Q Consensus 307 ~~~a~~d~Vl~lDaD~-~~~pd~L~~lv~~~~~ 338 (682)
. ..+.|.++++++|. .++++.+.+++..+.+
T Consensus 86 ~-~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~ 117 (229)
T cd02540 86 L-KDFEGDVLVLYGDVPLITPETLQRLLEAHRE 117 (229)
T ss_pred h-ccCCCeEEEEeCCccccCHHHHHHHHHHHHh
Confidence 3 11368899999999 5789999999988764
No 115
>PLN03180 reversibly glycosylated polypeptide; Provisional
Probab=80.88 E-value=14 Score=39.22 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=19.8
Q ss_pred HHHHHhhcccCCccEEEEEcCCCCCCHH
Q 005700 300 LKSAMNCSYVKDYEFVAIFDADFQPNPD 327 (682)
Q Consensus 300 Ln~gl~~~~~a~~d~Vl~lDaD~~~~pd 327 (682)
.+.|+- .++.+|++.+|.|+.+..|
T Consensus 85 R~fGyL---~s~~~yivsiDDD~~Pa~d 109 (346)
T PLN03180 85 RCFGYL---VSKKKYIFTIDDDCFVAKD 109 (346)
T ss_pred hhhhhe---eecceEEEEECCCCCCCCC
Confidence 355655 4679999999999998766
No 116
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=79.81 E-value=29 Score=35.35 Aligned_cols=183 Identities=12% Similarity=0.119 Sum_probs=88.0
Q ss_pred CchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhhcccC
Q 005700 231 NEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVK 310 (682)
Q Consensus 231 NE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~~~~a 310 (682)
+....+..+++.+.+.. -++ |+|+-| ++...+.+ + ..+++++.. .....|+.. .+..+++.....
T Consensus 22 ~GkPli~~~le~~~~~~--~d~--VvVvt~--~~~i~~~~----~---~~g~~~v~~-~~~~~~Gt~-r~~~~~~~l~~~ 86 (238)
T TIGR00466 22 FGKPMIVHVAENANESG--ADR--CIVATD--DESVAQTC----Q---KFGIEVCMT-SKHHNSGTE-RLAEVVEKLALK 86 (238)
T ss_pred CCcCHHHHHHHHHHhCC--CCe--EEEEeC--HHHHHHHH----H---HcCCEEEEe-CCCCCChhH-HHHHHHHHhCCC
Confidence 34567888888877643 334 334432 12333222 2 345665432 222233222 233333321123
Q ss_pred CccEEEEEcCCC-CCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCC----CChHHHhhhhh-hh--hhhHH---HHh---
Q 005700 311 DYEFVAIFDADF-QPNPDFLRRTVPHFKDNEELGLVQARWSFVNKD----ENLLTRLQDIN-LS--FHFEV---EQQ--- 376 (682)
Q Consensus 311 ~~d~Vl~lDaD~-~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~----~~l~t~~~~~~-~~--~~~~~---~~~--- 376 (682)
+.|+|+++|+|. .++|+.+++++..+.+ ++.+++.......+.. .+......+-+ .. +.... .+.
T Consensus 87 ~~d~Vli~~gD~Pli~~~~I~~li~~~~~-~~~~~a~~~~~~~d~~~~~~p~~vk~v~~~~g~alyfsr~~ip~~R~~~~ 165 (238)
T TIGR00466 87 DDERIVNLQGDEPFIPKEIIRQVADNLAT-KNVPMAALAVKIHDAEEAFNPNAVKVVLDSQGYALYFSRSLIPFDRDFFA 165 (238)
T ss_pred CCCEEEEEcCCcCcCCHHHHHHHHHHHhc-CCCCEEEEeeecCCHHHccCCCceEEEeCCCCeEEEecCCCCCCCCCccc
Confidence 578999999999 6899999999999853 3333333222221100 00000000000 00 00000 000
Q ss_pred -hccccc-cccccccceEEEEeeeehhcCCCCCCCc--hhHHHHHHHHHHcCCeEEEec
Q 005700 377 -VNGVFI-NFFGFNGTAGVWRIKALEDSGGWMERTT--VEDMDIAVRAHLRGWKFIFLN 431 (682)
Q Consensus 377 -~~~~~~-~~~~~~G~~~~~Rr~al~~iGG~~~~~~--~ED~~l~~rl~~~G~ki~y~~ 431 (682)
....-. ... .+=.-..||++++++.-.+++..+ .|+.+ -+|+..+|+++....
T Consensus 166 ~~~tpq~~~~~-~h~Giy~~~~~~L~~~~~~~~~~le~~e~le-qlr~le~g~~i~~~~ 222 (238)
T TIGR00466 166 KRQTPVGDNLL-RHIGIYGYRAGFIEEYVAWKPCVLEEIEKLE-QLRVLYYGEKIHVKI 222 (238)
T ss_pred cccccccccee-EEEEEEeCCHHHHHHHHhCCCCcccccchhH-HHhhhhcCCceEEEE
Confidence 000000 011 122246689999998766755433 34444 468889999987754
No 117
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=79.75 E-value=11 Score=37.96 Aligned_cols=98 Identities=9% Similarity=0.103 Sum_probs=56.0
Q ss_pred CchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhhcccC
Q 005700 231 NEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVK 310 (682)
Q Consensus 231 NE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~~~~a 310 (682)
+....+..+++.+.+...- +++ ++|+++...+.. ++.++++.....++..+ ....+ ...++..|++.. .
T Consensus 28 ~gkpll~~~i~~~~~~~~~-~~i-vVv~~~~~~~~~----~~~~~~~~~~~~~~~~v--~~g~~-r~~sv~~gl~~~--~ 96 (230)
T PRK13385 28 VGEPIFIHALRPFLADNRC-SKI-IIVTQAQERKHV----QDLMKQLNVADQRVEVV--KGGTE-RQESVAAGLDRI--G 96 (230)
T ss_pred CCeEHHHHHHHHHHcCCCC-CEE-EEEeChhhHHHH----HHHHHhcCcCCCceEEc--CCCch-HHHHHHHHHHhc--c
Confidence 4567888999988764322 232 334443222222 22222221111122222 12222 347777888752 3
Q ss_pred CccEEEEEcCCC-CCCHHHHHHHHHHhhcC
Q 005700 311 DYEFVAIFDADF-QPNPDFLRRTVPHFKDN 339 (682)
Q Consensus 311 ~~d~Vl~lDaD~-~~~pd~L~~lv~~~~~~ 339 (682)
+.+++++.|+|. .++++.+++++..+..+
T Consensus 97 ~~d~vli~~~d~P~i~~~~i~~li~~~~~~ 126 (230)
T PRK13385 97 NEDVILVHDGARPFLTQDIIDRLLEGVAKY 126 (230)
T ss_pred CCCeEEEccCCCCCCCHHHHHHHHHHHhhC
Confidence 468999999999 78999999999988653
No 118
>PF05045 RgpF: Rhamnan synthesis protein F; InterPro: IPR007739 This family consists of a group of proteins which are related to the Streptococcal rhamnose-glucose polysaccharide assembly protein (RgpF). Rhamnan backbones are found in several O-polysaccharides found in phytopathogenic bacteria and are regarded as pathogenic factors [].
Probab=79.55 E-value=35 Score=38.98 Aligned_cols=122 Identities=15% Similarity=0.249 Sum_probs=70.9
Q ss_pred CCCeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhh-cCCeEEEEeccCCCCcch
Q 005700 219 FFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQE-AGANIVYRHRILRDGYKA 297 (682)
Q Consensus 219 ~~P~VsVvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~-~~v~v~~~~r~~~~g~Ka 297 (682)
..++|.|++=+|-++ .+.+.++.+.+... .++++|--++.+ -.+.+++...+... ..+.+..+ .|.|.=.
T Consensus 263 ~~~kiav~lHv~Y~D-Ll~E~l~~l~~~p~---~~Dl~ITt~~~~--~~~~i~~~l~~~~~~~~~~v~vv---~NrGRDi 333 (498)
T PF05045_consen 263 SKKKIAVHLHVFYPD-LLEEILDYLANIPF---PYDLFITTDSEE--KKEEIEEILAKRPGFKNAEVRVV---ENRGRDI 333 (498)
T ss_pred CCCcEEEEEEEEcHh-hHHHHHHHHHhCCC---CeEEEEECCchh--hHHHHHHHHHhccCCCceEEEEe---CCCCccH
Confidence 457899999999876 45566666655432 345666543322 23344444432222 23344333 3445444
Q ss_pred hhHHHHHhhc-ccCCccEEEEEcCCCCCC--------------------HHHHHHHHHHhhcCCCeeEEEeee
Q 005700 298 GNLKSAMNCS-YVKDYEFVAIFDADFQPN--------------------PDFLRRTVPHFKDNEELGLVQARW 349 (682)
Q Consensus 298 gaLn~gl~~~-~~a~~d~Vl~lDaD~~~~--------------------pd~L~~lv~~~~~~p~vg~Vqg~~ 349 (682)
+.+-.+++.. ...++|+|+.+.+--.++ ++.+.+.+..|+++|++|+|.+..
T Consensus 334 ~pfLv~~~~~l~~~~YD~v~~~HtKKS~~~~~~~g~~wr~~l~~~LL~s~~~v~~Il~~F~~~p~lGlv~P~~ 406 (498)
T PF05045_consen 334 LPFLVGLKDELLDSKYDYVCHLHTKKSPHNDRSDGDSWRRELLDNLLGSKEYVDNILSAFEDDPRLGLVIPDI 406 (498)
T ss_pred HHHHHHHHHHhccCCccEEEEEEcccCcCcCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCceEEeCCc
Confidence 5544333321 136899999987654443 244667788888899999998764
No 119
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=78.87 E-value=22 Score=35.23 Aligned_cols=96 Identities=11% Similarity=0.171 Sum_probs=55.4
Q ss_pred CchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEecc---CCCCcchhhHHHHHhhc
Q 005700 231 NEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRI---LRDGYKAGNLKSAMNCS 307 (682)
Q Consensus 231 NE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~---~~~g~KagaLn~gl~~~ 307 (682)
+....+..+++.+.+..... + |+|+-| ++...+.++ ..+..+.+.+.. ....+....+..+++..
T Consensus 24 ~Gkpll~~~l~~l~~~~~~~-~--IvV~~~--~~~i~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l 91 (223)
T cd02513 24 GGKPLIAWTIEAALESKLFD-R--VVVSTD--DEEIAEVAR-------KYGAEVPFLRPAELATDTASSIDVILHALDQL 91 (223)
T ss_pred CCccHHHHHHHHHHhCCCCC-E--EEEECC--cHHHHHHHH-------HhCCCceeeCChHHCCCCCCcHHHHHHHHHHH
Confidence 44567888888888754222 3 444432 233333222 234422232211 11113455677777642
Q ss_pred cc--CCccEEEEEcCCC-CCCHHHHHHHHHHhhc
Q 005700 308 YV--KDYEFVAIFDADF-QPNPDFLRRTVPHFKD 338 (682)
Q Consensus 308 ~~--a~~d~Vl~lDaD~-~~~pd~L~~lv~~~~~ 338 (682)
.. .+.|.++++++|. .+.++.+++++..+..
T Consensus 92 ~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~ 125 (223)
T cd02513 92 EELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLS 125 (223)
T ss_pred HHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHh
Confidence 11 1358999999999 6799999999999875
No 120
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=77.85 E-value=55 Score=33.11 Aligned_cols=179 Identities=14% Similarity=0.164 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhhcccCCcc
Q 005700 234 EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVKDYE 313 (682)
Q Consensus 234 ~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~~~~a~~d 313 (682)
..+.++.+.+.+.. .++ |+|.-| |+...+.++ ..|..++.-+.....| ..-+..+++.....+.+
T Consensus 29 pmI~rV~e~a~~s~--~~r--vvVATD--de~I~~av~-------~~G~~avmT~~~h~SG--TdR~~Ev~~~l~~~~~~ 93 (247)
T COG1212 29 PMIVRVAERALKSG--ADR--VVVATD--DERIAEAVQ-------AFGGEAVMTSKDHQSG--TDRLAEVVEKLGLPDDE 93 (247)
T ss_pred hHHHHHHHHHHHcC--CCe--EEEEcC--CHHHHHHHH-------HhCCEEEecCCCCCCc--cHHHHHHHHhcCCCcce
Confidence 45666666666542 234 444443 233444443 4577766554333334 33455666654345789
Q ss_pred EEEEEcCCC-CCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCC----ChHHHhhhh-hhhhhhHHHHh-hc-ccccccc
Q 005700 314 FVAIFDADF-QPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDE----NLLTRLQDI-NLSFHFEVEQQ-VN-GVFINFF 385 (682)
Q Consensus 314 ~Vl~lDaD~-~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~----~l~t~~~~~-~~~~~~~~~~~-~~-~~~~~~~ 385 (682)
+|+.+-+|. .++|..++.++..++++ +.++++......+..+ |...-...- .+..+|...-. .. ... +..
T Consensus 94 iIVNvQGDeP~i~p~~I~~~~~~L~~~-~~~~aTl~~~i~~~ee~~nPN~VKvV~d~~g~ALYFSRs~iP~~rd~~-~~~ 171 (247)
T COG1212 94 IIVNVQGDEPFIEPEVIRAVAENLENS-NADMATLAVKITDEEEAFNPNVVKVVLDKEGYALYFSRAPIPYGRDNF-GGT 171 (247)
T ss_pred EEEEccCCCCCCCHHHHHHHHHHHHhC-CcceeeeeeecCCHHHhcCCCcEEEEEcCCCcEEEEEcCCCCCccccc-CCc
Confidence 999999999 78999999999999864 7777765544333221 111000000 11111111000 00 000 001
Q ss_pred ccccc--eEEEEeeeehhcCCCCCCCchhHHHH--HHHHHHcCCeEEEe
Q 005700 386 GFNGT--AGVWRIKALEDSGGWMERTTVEDMDI--AVRAHLRGWKFIFL 430 (682)
Q Consensus 386 ~~~G~--~~~~Rr~al~~iGG~~~~~~~ED~~l--~~rl~~~G~ki~y~ 430 (682)
++-++ -..||++++++...|.+. .-|+.+- -+|+..+|.||...
T Consensus 172 p~l~HIGIYayr~~~L~~f~~~~ps-~LE~~E~LEQLR~Le~G~kI~v~ 219 (247)
T COG1212 172 PFLRHIGIYAYRAGFLERFVALKPS-PLEKIESLEQLRVLENGEKIHVE 219 (247)
T ss_pred chhheeehHHhHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHcCCeeEEE
Confidence 11122 234788899988888765 3344332 46778899998654
No 121
>PF13733 Glyco_transf_7N: N-terminal region of glycosyl transferase group 7; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=77.52 E-value=2.4 Score=39.13 Aligned_cols=77 Identities=16% Similarity=0.224 Sum_probs=45.9
Q ss_pred CCeEEEEeecCCchHHHHHHHHHH---H-cCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCc
Q 005700 220 FPMVLVQIPMCNEKEVYQQSIAAV---C-NLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGY 295 (682)
Q Consensus 220 ~P~VsVvIP~yNE~~~l~~tL~Sl---~-~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~ 295 (682)
.-+|.|+||-+|.++.+...+..+ + +|. -++.|+|++-..+....
T Consensus 46 ~~kvAiIIPyRdR~~hL~~fl~~l~~~L~rQ~---~~y~I~vieQ~~~~~FN---------------------------- 94 (136)
T PF13733_consen 46 RHKVAIIIPYRDREEHLRIFLPHLHPFLQRQQ---LDYRIFVIEQVDNGPFN---------------------------- 94 (136)
T ss_dssp S-EEEEEEEESS-HHHHHHHHHHHHHHHHHTT----EEEEEEEEE-SSS-------------------------------
T ss_pred ccceEEEEEeCCHHHHHHHHHHHHHHHHhhCc---ceEEEEEEeeccCCCCc----------------------------
Confidence 458999999999997777766654 3 243 25678888764332211
Q ss_pred chhhHHHHHhhcc-cCCccEEEEEcCCCCCCHH
Q 005700 296 KAGNLKSAMNCSY-VKDYEFVAIFDADFQPNPD 327 (682)
Q Consensus 296 KagaLn~gl~~~~-~a~~d~Vl~lDaD~~~~pd 327 (682)
|+.-+|.|+..+. ..+.|.+++-|-|..+..+
T Consensus 95 Rg~L~NvGf~eA~~~~~~dc~ifHDVDllP~~~ 127 (136)
T PF13733_consen 95 RGKLMNVGFLEALKDDDFDCFIFHDVDLLPEND 127 (136)
T ss_dssp HHHHHHHHHHHHHHHS--SEEEEE-TTEEESBT
T ss_pred hhhhhhHHHHHHhhccCCCEEEEecccccccCC
Confidence 4445666665432 2368999999999887654
No 122
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=76.70 E-value=27 Score=34.42 Aligned_cols=98 Identities=13% Similarity=0.135 Sum_probs=56.4
Q ss_pred eecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhh
Q 005700 227 IPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNC 306 (682)
Q Consensus 227 IP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~ 306 (682)
+|..+ ...+..+++.+.+..- .+ |+|+-+..++...+.+.. ....+.++.+.......| .++++..+++.
T Consensus 24 l~i~g-~pli~~~l~~l~~~g~--~~--v~vv~~~~~~~i~~~~~~----~~~~~~~~~~~~~~~~~G-~~~~l~~a~~~ 93 (223)
T cd06915 24 APVAG-RPFLEYLLEYLARQGI--SR--IVLSVGYLAEQIEEYFGD----GYRGGIRIYYVIEPEPLG-TGGAIKNALPK 93 (223)
T ss_pred cEECC-cchHHHHHHHHHHCCC--CE--EEEEcccCHHHHHHHHcC----ccccCceEEEEECCCCCc-chHHHHHHHhh
Confidence 34444 4678888888887542 23 444444334443333321 001244554443333344 77778888874
Q ss_pred cccCCccEEEEEcCCCCCCHHHHHHHHHHhhc
Q 005700 307 SYVKDYEFVAIFDADFQPNPDFLRRTVPHFKD 338 (682)
Q Consensus 307 ~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~ 338 (682)
.+.|.++++++|+..+++ +.+++..+.+
T Consensus 94 ---~~~~~~lv~~~D~~~~~~-~~~~l~~~~~ 121 (223)
T cd06915 94 ---LPEDQFLVLNGDTYFDVD-LLALLAALRA 121 (223)
T ss_pred ---cCCCCEEEEECCcccCCC-HHHHHHHHHh
Confidence 245779999999977655 5677776653
No 123
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=76.65 E-value=23 Score=34.77 Aligned_cols=97 Identities=14% Similarity=0.194 Sum_probs=56.6
Q ss_pred eecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhh
Q 005700 227 IPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNC 306 (682)
Q Consensus 227 IP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~ 306 (682)
+|..+ ...+..+++++.+... .+ |+|+-+...+...+.+. +....+.++.+.......| -++++..+++.
T Consensus 24 l~v~g-~pli~~~l~~l~~~g~--~~--i~vv~~~~~~~i~~~~~----~~~~~~~~i~~~~~~~~~g-~~~al~~~~~~ 93 (217)
T cd04181 24 LPIAG-KPILEYIIERLARAGI--DE--IILVVGYLGEQIEEYFG----DGSKFGVNIEYVVQEEPLG-TAGAVRNAEDF 93 (217)
T ss_pred cEECC-eeHHHHHHHHHHHCCC--CE--EEEEeccCHHHHHHHHc----ChhhcCceEEEEeCCCCCc-cHHHHHHhhhh
Confidence 34444 4788899999888653 24 33333333333333322 1111345665554333334 67888888774
Q ss_pred cccCCccEEEEEcCCCCCCHHHHHHHHHHhh
Q 005700 307 SYVKDYEFVAIFDADFQPNPDFLRRTVPHFK 337 (682)
Q Consensus 307 ~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~ 337 (682)
.+.+.++++++|...+.+. .+++....
T Consensus 94 ---~~~~~~lv~~~D~~~~~~~-~~~~~~~~ 120 (217)
T cd04181 94 ---LGDDDFLVVNGDVLTDLDL-SELLRFHR 120 (217)
T ss_pred ---cCCCCEEEEECCeecCcCH-HHHHHHHH
Confidence 2678899999999887774 44555444
No 124
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=76.58 E-value=24 Score=35.15 Aligned_cols=95 Identities=13% Similarity=0.147 Sum_probs=58.0
Q ss_pred eecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEecc-CCCCcchhhHHHHHh
Q 005700 227 IPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRI-LRDGYKAGNLKSAMN 305 (682)
Q Consensus 227 IP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~-~~~g~KagaLn~gl~ 305 (682)
+|..+. ..+...++++.+.... + |+|+-+...+...+.+.. ...++++.+.... ...| -++++..++.
T Consensus 25 lpi~g~-~li~~~l~~l~~~gi~--~--i~iv~~~~~~~i~~~~~~-----~~~~~~i~~~~~~~~~~g-~~~~l~~~~~ 93 (221)
T cd06422 25 VPVAGK-PLIDHALDRLAAAGIR--R--IVVNTHHLADQIEAHLGD-----SRFGLRITISDEPDELLE-TGGGIKKALP 93 (221)
T ss_pred eeECCE-EHHHHHHHHHHHCCCC--E--EEEEccCCHHHHHHHHhc-----ccCCceEEEecCCCcccc-cHHHHHHHHH
Confidence 455555 8899999999887543 3 444444443444333321 1245666665433 2334 6778888887
Q ss_pred hcccCCccEEEEEcCCCCCCHHHHHHHHHH
Q 005700 306 CSYVKDYEFVAIFDADFQPNPDFLRRTVPH 335 (682)
Q Consensus 306 ~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~ 335 (682)
.. +.|.++++++|...+.+....+..+
T Consensus 94 ~~---~~~~~lv~~~D~i~~~~~~~~~~~~ 120 (221)
T cd06422 94 LL---GDEPFLVVNGDILWDGDLAPLLLLH 120 (221)
T ss_pred hc---CCCCEEEEeCCeeeCCCHHHHHHHH
Confidence 42 2378999999998888765544433
No 125
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=76.42 E-value=27 Score=39.05 Aligned_cols=102 Identities=16% Similarity=0.169 Sum_probs=58.2
Q ss_pred eecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhh
Q 005700 227 IPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNC 306 (682)
Q Consensus 227 IP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~ 306 (682)
+|.-+ ...++.+++.+.+... +++ +|+-....+...+.+. ..+.++.+.......| -++++..+++.
T Consensus 28 l~v~g-kpli~~~l~~l~~~gi--~~i--vvv~~~~~~~i~~~~~-------~~~~~~~~~~~~~~~G-~~~sl~~a~~~ 94 (446)
T PRK14353 28 HPVAG-RPMLAHVLAAAASLGP--SRV--AVVVGPGAEAVAAAAA-------KIAPDAEIFVQKERLG-TAHAVLAAREA 94 (446)
T ss_pred CEECC-chHHHHHHHHHHhCCC--CcE--EEEECCCHHHHHHHhh-------ccCCCceEEEcCCCCC-cHHHHHHHHHH
Confidence 45444 4788999999887653 243 3333333333333222 2222333332333334 56777777764
Q ss_pred cccCCccEEEEEcCCC-CCCHHHHHHHHHHhhcCCCe
Q 005700 307 SYVKDYEFVAIFDADF-QPNPDFLRRTVPHFKDNEEL 342 (682)
Q Consensus 307 ~~~a~~d~Vl~lDaD~-~~~pd~L~~lv~~~~~~p~v 342 (682)
. ....|.++++++|. .++++.+++++.+.+.+.+.
T Consensus 95 l-~~~~~~~lv~~~D~P~i~~~~l~~l~~~~~~~~~~ 130 (446)
T PRK14353 95 L-AGGYGDVLVLYGDTPLITAETLARLRERLADGADV 130 (446)
T ss_pred H-hccCCCEEEEeCCcccCCHHHHHHHHHhHhcCCcE
Confidence 2 11346788899999 78999999999866543333
No 126
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=74.86 E-value=24 Score=34.36 Aligned_cols=89 Identities=15% Similarity=0.157 Sum_probs=53.7
Q ss_pred CchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhhcccC
Q 005700 231 NEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVK 310 (682)
Q Consensus 231 NE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~~~~a 310 (682)
+....++.+++.+.. .. ++ |+|+-+...+ ..+ ..+++++........| -..++..|++ ..
T Consensus 28 ~g~~ll~~~i~~l~~-~~--~~--i~vv~~~~~~----~~~-------~~~~~~v~~~~~~~~g-~~~~i~~~l~---~~ 87 (193)
T PRK00317 28 NGKPLIQHVIERLAP-QV--DE--IVINANRNLA----RYA-------AFGLPVIPDSLADFPG-PLAGILAGLK---QA 87 (193)
T ss_pred CCEEHHHHHHHHHhh-hC--CE--EEEECCCChH----HHH-------hcCCcEEeCCCCCCCC-CHHHHHHHHH---hc
Confidence 456788888888762 21 23 4444332111 111 2344443211111133 5567788887 35
Q ss_pred CccEEEEEcCCC-CCCHHHHHHHHHHhhcC
Q 005700 311 DYEFVAIFDADF-QPNPDFLRRTVPHFKDN 339 (682)
Q Consensus 311 ~~d~Vl~lDaD~-~~~pd~L~~lv~~~~~~ 339 (682)
+.|+++++++|. .++++.+++++..+.++
T Consensus 88 ~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~ 117 (193)
T PRK00317 88 RTEWVLVVPCDTPFIPPDLVARLAQAAGKD 117 (193)
T ss_pred CCCeEEEEcCCcCCCCHHHHHHHHHhhhcC
Confidence 679999999999 77999999999987543
No 127
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=74.74 E-value=24 Score=34.93 Aligned_cols=99 Identities=18% Similarity=0.176 Sum_probs=57.0
Q ss_pred CchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhhcccC
Q 005700 231 NEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVK 310 (682)
Q Consensus 231 NE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~~~~a 310 (682)
+....+..+++++.+.... ++ |+|+-+....... +.. ... .....+.... +..+ ...++..|++.....
T Consensus 26 ~Gkpll~~~i~~l~~~~~~-~~--ivVv~~~~~~~~~---~~~-~~~-~~~~~~~~~~--~~~~-~~~si~~al~~~~~~ 94 (218)
T cd02516 26 GGKPVLEHTLEAFLAHPAI-DE--IVVVVPPDDIDLA---KEL-AKY-GLSKVVKIVE--GGAT-RQDSVLNGLKALPDA 94 (218)
T ss_pred CCeEHHHHHHHHHhcCCCC-CE--EEEEeChhHHHHH---HHH-Hhc-ccCCCeEEEC--CchH-HHHHHHHHHHhcccC
Confidence 4557888999998875432 23 3343332222211 111 111 1112222221 1123 567788888852113
Q ss_pred CccEEEEEcCCC-CCCHHHHHHHHHHhhcCC
Q 005700 311 DYEFVAIFDADF-QPNPDFLRRTVPHFKDNE 340 (682)
Q Consensus 311 ~~d~Vl~lDaD~-~~~pd~L~~lv~~~~~~p 340 (682)
+.|.++++++|. .++++.+++++..+..+.
T Consensus 95 ~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~ 125 (218)
T cd02516 95 DPDIVLIHDAARPFVSPELIDRLIDALKEYG 125 (218)
T ss_pred CCCEEEEccCcCCCCCHHHHHHHHHHHhhCC
Confidence 678999999999 689999999999886543
No 128
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=73.24 E-value=36 Score=36.01 Aligned_cols=118 Identities=15% Similarity=0.198 Sum_probs=66.8
Q ss_pred CCeEEEEeecCCch--HHHHHHHHHHHcCCCCCC--ceE-EEEEcCCCChhHHHHHHHHHHHHh----hcCCeEEEEecc
Q 005700 220 FPMVLVQIPMCNEK--EVYQQSIAAVCNLDWPKS--KIL-IQVLDDSDDPTAQTLIKEEVLKWQ----EAGANIVYRHRI 290 (682)
Q Consensus 220 ~P~VsVvIP~yNE~--~~l~~tL~Sl~~qdYP~~--~l~-ViVvDD~sdd~t~~~l~~~~~~~~----~~~v~v~~~~r~ 290 (682)
-+++.|=||+-..+ ..+..||.|+++.--|.+ .+. |+.+.|.+.+......+....+++ ...+.++.....
T Consensus 51 ~~~L~IGIpTV~R~~~sYL~~TL~SLl~~ls~~Er~~i~IvVllAd~Dp~~~~~~~~~i~~~f~~~i~sG~l~VI~~p~~ 130 (297)
T PF04666_consen 51 GKKLCIGIPTVKREKESYLLDTLASLLDGLSPEERKDIVIVVLLADTDPDYHPSVAQNISTRFADHIESGLLEVISPPPS 130 (297)
T ss_pred CCeEEEEecccccCCCchHHHHHHHHHHhCCHHHhcCeEEEEEecCCChhhhHHHHHHHHHHhHHHHHhCceEEEecccc
Confidence 44599999998765 889999999998666643 233 333444443333334433332222 112222211110
Q ss_pred ---------CCCCc--c------hhhHHH--HHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhc
Q 005700 291 ---------LRDGY--K------AGNLKS--AMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKD 338 (682)
Q Consensus 291 ---------~~~g~--K------agaLn~--gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~ 338 (682)
.+-|- + ..++.+ .|... ...++|.+.+.+|.+..|+|+.++......
T Consensus 131 ~Yp~l~~l~~~~~d~~~rv~wrsKq~lDya~Lm~y~-~~~~~YyL~LEDDVia~~~f~~~i~~~v~~ 196 (297)
T PF04666_consen 131 YYPDLDNLKRNFGDSEERVRWRSKQNLDYAFLMNYC-QNLGDYYLQLEDDVIAAPGFLSRIKRFVEA 196 (297)
T ss_pred cCCChhhhhhcccChhhhhhHHHhhcccHHHHHHHH-HhcCCeEEEecCCeEechhHHHHHHHHHHH
Confidence 00010 0 012222 22221 357899999999999999999999888865
No 129
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=73.11 E-value=24 Score=35.46 Aligned_cols=100 Identities=17% Similarity=0.232 Sum_probs=57.3
Q ss_pred eecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHh-hcCCeEEEEeccCCCCcchhhHHHHHh
Q 005700 227 IPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQ-EAGANIVYRHRILRDGYKAGNLKSAMN 305 (682)
Q Consensus 227 IP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~-~~~v~v~~~~r~~~~g~KagaLn~gl~ 305 (682)
+|..+. ..+..+++++.++... ++ +|+-....+...+.+. ++. ..++++.+.......| -++++..+..
T Consensus 26 lpv~g~-pli~~~l~~l~~~g~~--~v--~iv~~~~~~~~~~~l~----~~~~~~~~~i~~~~~~~~~G-~~~al~~a~~ 95 (233)
T cd06425 26 VEFCNK-PMIEHQIEALAKAGVK--EI--ILAVNYRPEDMVPFLK----EYEKKLGIKITFSIETEPLG-TAGPLALARD 95 (233)
T ss_pred CeECCc-chHHHHHHHHHHCCCc--EE--EEEeeeCHHHHHHHHh----cccccCCeEEEeccCCCCCc-cHHHHHHHHH
Confidence 455554 7899999999887543 43 3333333333333333 221 3456666543333334 6778888777
Q ss_pred hcccCCccEEEEEcCCCCCCHHHHHHHHHHhhc
Q 005700 306 CSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKD 338 (682)
Q Consensus 306 ~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~ 338 (682)
.....+.+ ++++++|...+.+ +++++.....
T Consensus 96 ~~~~~~~~-~lv~~~D~~~~~~-~~~~~~~~~~ 126 (233)
T cd06425 96 LLGDDDEP-FFVLNSDVICDFP-LAELLDFHKK 126 (233)
T ss_pred HhccCCCC-EEEEeCCEeeCCC-HHHHHHHHHH
Confidence 53111245 5777999987766 4777776654
No 130
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=73.02 E-value=92 Score=36.51 Aligned_cols=194 Identities=10% Similarity=0.051 Sum_probs=97.2
Q ss_pred CeEEEEeecCCch----HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcc
Q 005700 221 PMVLVQIPMCNEK----EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYK 296 (682)
Q Consensus 221 P~VsVvIP~yNE~----~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~K 296 (682)
+.+.|+|.+.-.. +.|++|-..-.... ...-..++++--+.++.+.+.++++.+.+.+. +..-+...-.+.-.|
T Consensus 385 ~~LlI~V~Sap~nf~rR~AIR~TWg~~~~~~-~~~v~~rFvVG~s~n~~l~~~L~~Ea~~ygDI-Iq~dF~DsY~NLTlK 462 (636)
T PLN03133 385 LDLFIGVFSTANNFKRRMAVRRTWMQYDAVR-SGAVAVRFFVGLHKNQMVNEELWNEARTYGDI-QLMPFVDYYSLITWK 462 (636)
T ss_pred eEEEEEEeCCcccHHHHHHHHHhhccccccC-CCceEEEEEEecCCcHHHHHHHHHHHHHcCCe-EEEeeechhhhhHHH
Confidence 4566666655332 56666654421111 11112345565455566666666665544321 111122212222234
Q ss_pred hhh-HHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEe-----ecCCCChHHHhhhhhhhhh
Q 005700 297 AGN-LKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSF-----VNKDENLLTRLQDINLSFH 370 (682)
Q Consensus 297 aga-Ln~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~-----~n~~~~l~t~~~~~~~~~~ 370 (682)
.-. +..+.. ..+.+||+-+|+|+.+..+-|.+.+.... +.-++..|.... .+....+.-
T Consensus 463 tl~~~~wa~~---c~~akFilK~DDDvFVnv~~Ll~~L~~~~--~~~~Ly~G~v~~~~~PiRd~~sKWYV---------- 527 (636)
T PLN03133 463 TLAICIFGTE---VVSAKYVMKTDDDAFVRVDEVLASLKRTN--VSHGLLYGLINSDSQPHRNPDSKWYI---------- 527 (636)
T ss_pred HHHHHHHHHh---CCCceEEEEcCCceEEcHHHHHHHHHhcC--CCCceEEEEeccCCCcccCCCCCCCC----------
Confidence 322 222332 45789999999999998876666554332 222344443321 111111110
Q ss_pred hHHHHhhccccccccccccceEEEEeeeehhcC-----CCCCCCchhHHHHHHHHHH---cCCeEEEecCce
Q 005700 371 FEVEQQVNGVFINFFGFNGTAGVWRIKALEDSG-----GWMERTTVEDMDIAVRAHL---RGWKFIFLNDVE 434 (682)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~iG-----G~~~~~~~ED~~l~~rl~~---~G~ki~y~~~a~ 434 (682)
..+..-...+... +.|.+.++.+++.+.+- ..-.....||..++..+.. .|.++.|..+..
T Consensus 528 -s~~eyp~~~YPpY--asG~gYVlS~Dla~~L~~~s~s~~l~~f~lEDVyvGi~l~~l~k~gl~v~~~~~~r 596 (636)
T PLN03133 528 -SPEEWPEETYPPW--AHGPGYVVSRDIAKEVYKRHKEGRLKMFKLEDVAMGIWIAEMKKEGLEVKYENDGR 596 (636)
T ss_pred -CHHHCCCCCCCCC--CCcCEEEEcHHHHHHHHHhhhhcccCcCChhhHhHHHHHHHhcccCCCceeeCCCc
Confidence 0011111222222 68999999999988762 1223334799999998753 477776665543
No 131
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=71.58 E-value=45 Score=33.56 Aligned_cols=92 Identities=13% Similarity=0.087 Sum_probs=54.9
Q ss_pred chHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhhcccCC
Q 005700 232 EKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVKD 311 (682)
Q Consensus 232 E~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~~~~a~ 311 (682)
....++.+++++.+...- ++ |+|+-| ++...+.++ ..++++++..... .++.++ +..+++. .+
T Consensus 26 GkPli~~~i~~l~~~~~~-~~--ivv~t~--~~~i~~~~~-------~~~~~v~~~~~~~-~~g~~~-~~~a~~~---~~ 88 (238)
T PRK13368 26 GKPMIQHVYERAAQAAGV-EE--VYVATD--DQRIEDAVE-------AFGGKVVMTSDDH-LSGTDR-LAEVMLK---IE 88 (238)
T ss_pred CcCHHHHHHHHHHhcCCC-Ce--EEEECC--hHHHHHHHH-------HcCCeEEecCccC-CCccHH-HHHHHHh---CC
Confidence 356788888888875222 23 444433 233333322 3466665543222 233433 4445552 25
Q ss_pred ccEEEEEcCCC-CCCHHHHHHHHHHhhcCC
Q 005700 312 YEFVAIFDADF-QPNPDFLRRTVPHFKDNE 340 (682)
Q Consensus 312 ~d~Vl~lDaD~-~~~pd~L~~lv~~~~~~p 340 (682)
.|.++++++|+ .+.++.+.+++..+..++
T Consensus 89 ~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~ 118 (238)
T PRK13368 89 ADIYINVQGDEPMIRPRDIDTLIQPMLDDP 118 (238)
T ss_pred CCEEEEEcCCcCcCCHHHHHHHHHHHHHCC
Confidence 68999999999 689999999999886544
No 132
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=70.95 E-value=41 Score=33.81 Aligned_cols=100 Identities=16% Similarity=0.176 Sum_probs=56.2
Q ss_pred eecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhh
Q 005700 227 IPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNC 306 (682)
Q Consensus 227 IP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~ 306 (682)
+|. +....+..+++.+.+..-. ++ |+|+-+ .+.. ++... +.++++++.......| .++ +..+++.
T Consensus 21 ~~i-~gkpll~~~l~~l~~~~~i-~~--ivvv~~--~~~i----~~~~~---~~~~~~~~~~~~~~~g-t~~-~~~~~~~ 85 (239)
T cd02517 21 ADI-AGKPMIQHVYERAKKAKGL-DE--VVVATD--DERI----ADAVE---SFGGKVVMTSPDHPSG-TDR-IAEVAEK 85 (239)
T ss_pred ccc-CCcCHHHHHHHHHHhCCCC-CE--EEEECC--cHHH----HHHHH---HcCCEEEEcCcccCch-hHH-HHHHHHh
Confidence 344 4456888888888775211 23 334432 2322 22222 3456665543222223 443 4445543
Q ss_pred cccCCccEEEEEcCCC-CCCHHHHHHHHHHhhcCCCe
Q 005700 307 SYVKDYEFVAIFDADF-QPNPDFLRRTVPHFKDNEEL 342 (682)
Q Consensus 307 ~~~a~~d~Vl~lDaD~-~~~pd~L~~lv~~~~~~p~v 342 (682)
. ..+.|.++++++|. .++++.+++++..+..+++.
T Consensus 86 ~-~~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~ 121 (239)
T cd02517 86 L-DADDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGV 121 (239)
T ss_pred c-CCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCC
Confidence 1 12248899999999 78999999999888654333
No 133
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=70.62 E-value=43 Score=34.11 Aligned_cols=114 Identities=14% Similarity=0.023 Sum_probs=59.7
Q ss_pred EEeecCCc--hHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccC--CCCc----c
Q 005700 225 VQIPMCNE--KEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRIL--RDGY----K 296 (682)
Q Consensus 225 VvIP~yNE--~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~--~~g~----K 296 (682)
|++.+-+. ...+.-++.|++..+-. .+.++|++|+-+++..+.++...+ ..+.++....... .... +
T Consensus 3 i~~~a~d~~y~~~~~v~i~Sl~~~~~~--~~~~~il~~~is~~~~~~L~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~ 77 (246)
T cd00505 3 IVIVATGDEYLRGAIVLMKSVLRHRTK--PLRFHVLTNPLSDTFKAALDNLRK---LYNFNYELIPVDILDSVDSEHLKR 77 (246)
T ss_pred EEEEecCcchhHHHHHHHHHHHHhCCC--CeEEEEEEccccHHHHHHHHHHHh---ccCceEEEEeccccCcchhhhhcC
Confidence 44445553 37788889999885432 466778888766666666665433 2234443332211 0000 1
Q ss_pred h---hh-HHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEE
Q 005700 297 A---GN-LKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLV 345 (682)
Q Consensus 297 a---ga-Ln~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~V 345 (682)
. .+ ....+-.. ..+.|=|+.+|+|+++-.| +.++-..-.++..+++|
T Consensus 78 ~~~~~~y~RL~i~~l-lp~~~kvlYLD~D~iv~~d-i~~L~~~~l~~~~~aav 128 (246)
T cd00505 78 PIKIVTLTKLHLPNL-VPDYDKILYVDADILVLTD-IDELWDTPLGGQELAAA 128 (246)
T ss_pred ccccceeHHHHHHHH-hhccCeEEEEcCCeeeccC-HHHHhhccCCCCeEEEc
Confidence 1 11 11111111 2268999999999987643 45554433233445554
No 134
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=69.69 E-value=55 Score=37.08 Aligned_cols=100 Identities=11% Similarity=0.114 Sum_probs=58.5
Q ss_pred EeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHh
Q 005700 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMN 305 (682)
Q Consensus 226 vIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~ 305 (682)
++|..+. ..++.+++++.+... .++.| ++.. ..+...+.++ ..+..+.+...+...| -++++..+++
T Consensus 26 llpi~gk-pli~~~l~~l~~~g~--~~iiv-vv~~-~~~~i~~~~~-------~~~~~~~~~~~~~~~G-t~~si~~al~ 92 (482)
T PRK14352 26 LHTLAGR-SMLGHVLHAAAGLAP--QHLVV-VVGH-DRERVAPAVA-------ELAPEVDIAVQDEQPG-TGHAVQCALE 92 (482)
T ss_pred eceeCCc-cHHHHHHHHHHhcCC--CcEEE-EECC-CHHHHHHHhh-------ccCCccEEEeCCCCCC-cHHHHHHHHH
Confidence 3455554 488999999887643 24323 3332 2233332222 1122233333333334 6778888887
Q ss_pred hcccCCccEEEEEcCCC-CCCHHHHHHHHHHhhc
Q 005700 306 CSYVKDYEFVAIFDADF-QPNPDFLRRTVPHFKD 338 (682)
Q Consensus 306 ~~~~a~~d~Vl~lDaD~-~~~pd~L~~lv~~~~~ 338 (682)
.......+.++++++|. .++++.+++++..+..
T Consensus 93 ~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~ 126 (482)
T PRK14352 93 ALPADFDGTVVVTAGDVPLLDGETLADLVATHTA 126 (482)
T ss_pred HhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHh
Confidence 53112247899999999 6789999999987764
No 135
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=69.54 E-value=39 Score=34.55 Aligned_cols=103 Identities=17% Similarity=0.201 Sum_probs=59.9
Q ss_pred EeecCCchHHHHHHHHHHHcC-CCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHH
Q 005700 226 QIPMCNEKEVYQQSIAAVCNL-DWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAM 304 (682)
Q Consensus 226 vIP~yNE~~~l~~tL~Sl~~q-dYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl 304 (682)
.+|..+. ..|...|+++.+. ... + |+|+-....+...+.+.... ...++++.+.......| -++++..+.
T Consensus 25 llpv~g~-plI~~~l~~l~~~~gi~--~--i~iv~~~~~~~i~~~l~~~~---~~~~~~i~~~~~~~~~G-t~~al~~a~ 95 (257)
T cd06428 25 LFPVAGK-PMIHHHIEACAKVPDLK--E--VLLIGFYPESVFSDFISDAQ---QEFNVPIRYLQEYKPLG-TAGGLYHFR 95 (257)
T ss_pred cCeECCe-eHHHHHHHHHHhcCCCc--E--EEEEecCCHHHHHHHHHhcc---cccCceEEEecCCccCC-cHHHHHHHH
Confidence 4566666 7888999988873 432 3 34444434444443333210 12356666654433444 677776665
Q ss_pred hhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhc
Q 005700 305 NCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKD 338 (682)
Q Consensus 305 ~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~ 338 (682)
......+.|.++++.+|...+.| ++.++.....
T Consensus 96 ~~l~~~~~~~~lv~~gD~~~~~d-l~~~~~~h~~ 128 (257)
T cd06428 96 DQILAGNPSAFFVLNADVCCDFP-LQELLEFHKK 128 (257)
T ss_pred HHhhccCCCCEEEEcCCeecCCC-HHHHHHHHHH
Confidence 53212335678889999986654 7777776654
No 136
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=69.24 E-value=63 Score=32.63 Aligned_cols=93 Identities=14% Similarity=0.153 Sum_probs=53.5
Q ss_pred CchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhhcccC
Q 005700 231 NEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVK 310 (682)
Q Consensus 231 NE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~~~~a 310 (682)
+....+..+++.+.+.. .++ |+|+-+ .+...+. .. ..++++++.......| ..+ +..++......
T Consensus 25 ~Gkpll~~~l~~l~~~~--i~~--ivvv~~--~~~i~~~----~~---~~~~~v~~~~~~~~~g-t~~-~~~~~~~~~~~ 89 (245)
T PRK05450 25 GGKPMIVRVYERASKAG--ADR--VVVATD--DERIADA----VE---AFGGEVVMTSPDHPSG-TDR-IAEAAAKLGLA 89 (245)
T ss_pred CCcCHHHHHHHHHHhcC--CCe--EEEECC--cHHHHHH----HH---HcCCEEEECCCcCCCc-hHH-HHHHHHhcCCC
Confidence 34567888888887752 224 344433 2333222 22 3456665543222222 333 23333321123
Q ss_pred CccEEEEEcCCC-CCCHHHHHHHHHHhhc
Q 005700 311 DYEFVAIFDADF-QPNPDFLRRTVPHFKD 338 (682)
Q Consensus 311 ~~d~Vl~lDaD~-~~~pd~L~~lv~~~~~ 338 (682)
+.|.++++++|. .++++.+++++..+..
T Consensus 90 ~~~~vlv~~~D~Pli~~~~l~~li~~~~~ 118 (245)
T PRK05450 90 DDDIVVNVQGDEPLIPPEIIDQVAEPLAN 118 (245)
T ss_pred CCCEEEEecCCCCCCCHHHHHHHHHHHhc
Confidence 568899999999 7899999999988764
No 137
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=68.58 E-value=43 Score=31.98 Aligned_cols=85 Identities=12% Similarity=0.194 Sum_probs=53.7
Q ss_pred CchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhhcccC
Q 005700 231 NEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVK 310 (682)
Q Consensus 231 NE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~~~~a 310 (682)
+....++.+++.+.+. .++ |+|+-+..... .. ..+++++. .+....+...++..|++. .
T Consensus 24 ~g~~ll~~~i~~l~~~---~~~--iivv~~~~~~~----~~-------~~~~~~v~--~~~~~~G~~~si~~~l~~---~ 82 (181)
T cd02503 24 GGKPLLEHVLERLKPL---VDE--VVISANRDQER----YA-------LLGVPVIP--DEPPGKGPLAGILAALRA---A 82 (181)
T ss_pred CCEEHHHHHHHHHHhh---cCE--EEEECCCChHH----Hh-------hcCCcEee--CCCCCCCCHHHHHHHHHh---c
Confidence 3456778888877654 123 44444332222 11 23455443 222222367788888884 4
Q ss_pred CccEEEEEcCCC-CCCHHHHHHHHHHh
Q 005700 311 DYEFVAIFDADF-QPNPDFLRRTVPHF 336 (682)
Q Consensus 311 ~~d~Vl~lDaD~-~~~pd~L~~lv~~~ 336 (682)
+.|.++++++|. .++++.++.++..+
T Consensus 83 ~~~~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 83 PADWVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred CCCeEEEEeCCcCCCCHHHHHHHHHhh
Confidence 579999999999 67999999999887
No 138
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=68.58 E-value=40 Score=36.49 Aligned_cols=52 Identities=12% Similarity=0.132 Sum_probs=43.3
Q ss_pred CCeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHH
Q 005700 220 FPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKE 272 (682)
Q Consensus 220 ~P~VsVvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~ 272 (682)
.+.+.|+|=++|..+.++..|+|+.+...=. +..+++.-|.-+++..++++.
T Consensus 30 ~~~~vivvqVH~r~~yl~~li~sL~~~~~I~-~~llifSHd~~~~ein~~v~~ 81 (356)
T PF05060_consen 30 NDSIVIVVQVHNRPEYLKLLIDSLSQARGIE-EALLIFSHDFYSEEINDLVQS 81 (356)
T ss_pred CCCEEEEEEECCcHHHHHHHHHHHHHhhCcc-ceEEEEeccCChHHHHHHHHh
Confidence 4678899999999999999999999876544 455778889999998888875
No 139
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=68.52 E-value=59 Score=31.64 Aligned_cols=86 Identities=17% Similarity=0.147 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhhcccCCcc
Q 005700 234 EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVKDYE 313 (682)
Q Consensus 234 ~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~~~~a~~d 313 (682)
..+..+++.+.+... ++ |+|+.+. +...+.. ...++.++. .+. . +...++..|++.. ..+++
T Consensus 31 ~ll~~~l~~l~~~~~--~~--vvvv~~~--~~~~~~~-------~~~~v~~i~--~~~-~-G~~~si~~al~~~-~~~~~ 92 (195)
T TIGR03552 31 AMLRDVITALRGAGA--GA--VLVVSPD--PALLEAA-------RNLGAPVLR--DPG-P-GLNNALNAALAEA-REPGG 92 (195)
T ss_pred HHHHHHHHHHHhcCC--CC--EEEECCC--HHHHHHH-------HhcCCEEEe--cCC-C-CHHHHHHHHHHHh-hccCC
Confidence 356666666665432 23 4455442 2222221 134555442 222 2 4777888888753 23467
Q ss_pred EEEEEcCCC-CCCHHHHHHHHHHhh
Q 005700 314 FVAIFDADF-QPNPDFLRRTVPHFK 337 (682)
Q Consensus 314 ~Vl~lDaD~-~~~pd~L~~lv~~~~ 337 (682)
.++++-+|+ .+.++.+++++..++
T Consensus 93 ~vlv~~~D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 93 AVLILMADLPLLTPRELKRLLAAAT 117 (195)
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcc
Confidence 999999999 689999999998875
No 140
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=67.88 E-value=37 Score=35.60 Aligned_cols=108 Identities=13% Similarity=0.156 Sum_probs=59.5
Q ss_pred eEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEecc---CC-----C
Q 005700 222 MVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRI---LR-----D 293 (682)
Q Consensus 222 ~VsVvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~---~~-----~ 293 (682)
+++|+....|=...+..+|.|++.-. ...+.+.|++|+.+++..+.+.+. +...+.++....-. .. +
T Consensus 2 ~~~iv~~~~~y~~~~~~~i~Sil~n~--~~~~~fhii~d~~s~~~~~~l~~~---~~~~~~~i~f~~i~~~~~~~~~~~~ 76 (280)
T cd06431 2 HVAIVCAGYNASRDVVTLVKSVLFYR--RNPLHFHLITDEIARRILATLFQT---WMVPAVEVSFYNAEELKSRVSWIPN 76 (280)
T ss_pred EEEEEEccCCcHHHHHHHHHHHHHcC--CCCEEEEEEECCcCHHHHHHHHHh---ccccCcEEEEEEhHHhhhhhccCcc
Confidence 46777777554578889999998743 334778888886665554444332 22335555554321 11 0
Q ss_pred Ccchhh---HHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHH
Q 005700 294 GYKAGN---LKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPH 335 (682)
Q Consensus 294 g~Kaga---Ln~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~ 335 (682)
...... ....+-.....+.|-|+.+|+|.++..| |.++-..
T Consensus 77 ~~~s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~~d-i~eL~~~ 120 (280)
T cd06431 77 KHYSGIYGLMKLVLTEALPSDLEKVIVLDTDITFATD-IAELWKI 120 (280)
T ss_pred cchhhHHHHHHHHHHHhchhhcCEEEEEcCCEEEcCC-HHHHHHH
Confidence 101111 0111211122368999999999987554 3444443
No 141
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=67.19 E-value=44 Score=32.10 Aligned_cols=90 Identities=11% Similarity=0.125 Sum_probs=54.0
Q ss_pred CchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhhcccC
Q 005700 231 NEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVK 310 (682)
Q Consensus 231 NE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~~~~a 310 (682)
+....+..+++.+... .++ |+|+-+..... ... ...+++++........| -.+++..|++. .
T Consensus 25 ~g~pll~~~l~~l~~~---~~~--ivv~~~~~~~~---~~~------~~~~~~~i~~~~~~~~g-~~~si~~al~~---~ 86 (186)
T TIGR02665 25 GGKPLIEHVLARLRPQ---VSD--LAISANRNPER---YAQ------AGFGLPVVPDALADFPG-PLAGILAGLRW---A 86 (186)
T ss_pred CCEEHHHHHHHHHHhh---CCE--EEEEcCCCHHH---Hhh------ccCCCcEEecCCCCCCC-CHHHHHHHHHh---c
Confidence 3456777888877532 223 44544332211 111 02234443221112233 67778888874 3
Q ss_pred CccEEEEEcCCC-CCCHHHHHHHHHHhhc
Q 005700 311 DYEFVAIFDADF-QPNPDFLRRTVPHFKD 338 (682)
Q Consensus 311 ~~d~Vl~lDaD~-~~~pd~L~~lv~~~~~ 338 (682)
+.|.++++++|. .++++.+++++..+..
T Consensus 87 ~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 115 (186)
T TIGR02665 87 GTDWVLTVPCDTPFLPEDLVARLAAALEA 115 (186)
T ss_pred CCCeEEEEecCCCcCCHHHHHHHHHHhhc
Confidence 678999999999 7899999999998864
No 142
>PLN03153 hypothetical protein; Provisional
Probab=66.04 E-value=12 Score=42.27 Aligned_cols=101 Identities=14% Similarity=0.062 Sum_probs=60.7
Q ss_pred cCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHhhhhhhhhhhHHHHhhccccccccccc
Q 005700 309 VKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGVFINFFGFN 388 (682)
Q Consensus 309 ~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (682)
..+.++++++|+|+.+.++-|.+.+..+.. .+--.+......... +. .+...+...
T Consensus 208 ~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDp-tkp~YIGs~Se~~~q---------n~--------------~f~~~fA~G 263 (537)
T PLN03153 208 LPDVRWFVLGDDDTIFNADNLVAVLSKYDP-SEMVYVGGPSESHSA---------NS--------------YFSHNMAFG 263 (537)
T ss_pred CCCCCEEEEecCCccccHHHHHHHHhhcCC-CCCEEeccccccccc---------cc--------------ccccccccC
Confidence 467899999999998877777777666632 122222222111100 00 000112367
Q ss_pred cceEEEEeeeehhcCCCC-------CCCchhHHHHHHHHHHcCCeEEEecCc
Q 005700 389 GTAGVWRIKALEDSGGWM-------ERTTVEDMDIAVRAHLRGWKFIFLNDV 433 (682)
Q Consensus 389 G~~~~~Rr~al~~iGG~~-------~~~~~ED~~l~~rl~~~G~ki~y~~~a 433 (682)
|++.++.+.+++.+.... +...++|..++.-+...|-+....+.-
T Consensus 264 GAG~~LSrPLae~L~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~LT~~~gf 315 (537)
T PLN03153 264 GGGIAISYPLAEALSRILDDCLDRYPKLYGSDDRLHACITELGVPLSREPGF 315 (537)
T ss_pred CceEEEcHHHHHHHHHHhhhhhhhcccCCCcHHHHHHHHHHcCCCceecCCc
Confidence 899999996666543221 123568889999999999777665544
No 143
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=65.71 E-value=54 Score=36.51 Aligned_cols=102 Identities=18% Similarity=0.210 Sum_probs=60.4
Q ss_pred eecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhh
Q 005700 227 IPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNC 306 (682)
Q Consensus 227 IP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~ 306 (682)
+|..+ ...+..+++++.+.... ++ +++-....+...+.+. +.++++. ......| -++++..+++.
T Consensus 23 ~~i~g-kpli~~~l~~l~~~g~~--~i--iiv~~~~~~~i~~~~~-------~~~i~~~--~~~~~~G-~~~ai~~a~~~ 87 (451)
T TIGR01173 23 HPLAG-KPMLEHVIDAARALGPQ--KI--HVVYGHGAEQVRKALA-------NRDVNWV--LQAEQLG-TGHAVLQALPF 87 (451)
T ss_pred ceeCC-ccHHHHHHHHHHhCCCC--eE--EEEECCCHHHHHHHhc-------CCCcEEE--EcCCCCc-hHHHHHHHHHh
Confidence 44444 47888899988876532 43 3333222333332222 2344433 2232334 67788888774
Q ss_pred cccCCccEEEEEcCCC-CCCHHHHHHHHHHhhcCCCeeEEE
Q 005700 307 SYVKDYEFVAIFDADF-QPNPDFLRRTVPHFKDNEELGLVQ 346 (682)
Q Consensus 307 ~~~a~~d~Vl~lDaD~-~~~pd~L~~lv~~~~~~p~vg~Vq 346 (682)
..+.|.++++++|+ ..+++.+++++..+.+ .+..++.
T Consensus 88 --l~~~~~~lv~~~D~p~i~~~~~~~l~~~~~~-~~~~~~~ 125 (451)
T TIGR01173 88 --LPDDGDVLVLYGDVPLISAETLERLLEAHRQ-NGITLLT 125 (451)
T ss_pred --cCCCCcEEEEECCcCCcCHHHHHHHHHHHhh-CCEEEEE
Confidence 23447899999998 6799999999988764 3443443
No 144
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=64.45 E-value=74 Score=31.78 Aligned_cols=98 Identities=16% Similarity=0.161 Sum_probs=54.5
Q ss_pred EeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHh
Q 005700 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMN 305 (682)
Q Consensus 226 vIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~ 305 (682)
++|..+. ..+..+++++.+... .+ |+|+-....+...+.++ .....+.++.+.......| -++++..+..
T Consensus 25 l~~i~g~-~li~~~l~~l~~~~~--~~--i~vv~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~g-~~~sl~~a~~ 94 (236)
T cd04189 25 LIPVAGK-PIIQYAIEDLREAGI--ED--IGIVVGPTGEEIKEALG----DGSRFGVRITYILQEEPLG-LAHAVLAARD 94 (236)
T ss_pred eeEECCc-chHHHHHHHHHHCCC--CE--EEEEcCCCHHHHHHHhc----chhhcCCeEEEEECCCCCC-hHHHHHHHHH
Confidence 3455454 788889988887643 24 44444434444443332 1112345665554333334 6777887776
Q ss_pred hcccCCccEEEEEcCCCCCCHHHHHHHHHHhh
Q 005700 306 CSYVKDYEFVAIFDADFQPNPDFLRRTVPHFK 337 (682)
Q Consensus 306 ~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~ 337 (682)
.. .+.++ +++.+|...+.+.. +++..+.
T Consensus 95 ~i--~~~~~-li~~~D~~~~~~~~-~~~~~~~ 122 (236)
T cd04189 95 FL--GDEPF-VVYLGDNLIQEGIS-PLVRDFL 122 (236)
T ss_pred hc--CCCCE-EEEECCeecCcCHH-HHHHHHH
Confidence 42 23455 55889998877754 4554443
No 145
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=63.42 E-value=31 Score=34.48 Aligned_cols=91 Identities=16% Similarity=0.250 Sum_probs=52.9
Q ss_pred eecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhh
Q 005700 227 IPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNC 306 (682)
Q Consensus 227 IP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~ 306 (682)
+|.-+ ...+..+++++.+.... + |+|+-+...+...+.++ .. .++.+++.......| -++++..+...
T Consensus 24 ~~~~g-~~li~~~l~~l~~~gi~--~--i~vv~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~g-~~~s~~~~~~~ 91 (229)
T cd02523 24 LEING-KPLLERQIETLKEAGID--D--IVIVTGYKKEQIEELLK----KY--PNIKFVYNPDYAETN-NIYSLYLARDF 91 (229)
T ss_pred eeECC-EEHHHHHHHHHHHCCCc--e--EEEEeccCHHHHHHHHh----cc--CCeEEEeCcchhhhC-cHHHHHHHHHH
Confidence 44444 47888999998876432 4 33343333333332221 11 345554332222334 67778888774
Q ss_pred cccCCccEEEEEcCCCCCCHHHHHHHH
Q 005700 307 SYVKDYEFVAIFDADFQPNPDFLRRTV 333 (682)
Q Consensus 307 ~~~a~~d~Vl~lDaD~~~~pd~L~~lv 333 (682)
. .+.++++++|+..+++.++.+.
T Consensus 92 ~----~~~~lv~~~D~~~~~~~~~~~~ 114 (229)
T cd02523 92 L----DEDFLLLEGDVVFDPSILERLL 114 (229)
T ss_pred c----CCCEEEEeCCEecCHHHHHHHH
Confidence 2 4778999999998888776655
No 146
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=62.68 E-value=86 Score=31.44 Aligned_cols=91 Identities=12% Similarity=0.199 Sum_probs=51.7
Q ss_pred CchHHHHHHHHHHHcCCCCCCceEEEEEcCCCC--hhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhhcc
Q 005700 231 NEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDD--PTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSY 308 (682)
Q Consensus 231 NE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sd--d~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~~~ 308 (682)
+....++.+++.+.+.... ++ |+|+-+... +...+.+. ..+++++. .+. .+.- +....+++
T Consensus 22 ~Gkpli~~~i~~l~~~~~~-~~--ivVv~~~~~~~~~i~~~~~-------~~~v~~v~--~~~-~~~l-~~~~~~~~--- 84 (233)
T cd02518 22 GGKPLLEHLLDRLKRSKLI-DE--IVIATSTNEEDDPLEALAK-------KLGVKVFR--GSE-EDVL-GRYYQAAE--- 84 (233)
T ss_pred CCccHHHHHHHHHHhCCCC-Ce--EEEECCCCcccHHHHHHHH-------HcCCeEEE--CCc-hhHH-HHHHHHHH---
Confidence 4456788899888875422 23 344444332 33332221 33455432 221 1111 11222333
Q ss_pred cCCccEEEEEcCCC-CCCHHHHHHHHHHhhc
Q 005700 309 VKDYEFVAIFDADF-QPNPDFLRRTVPHFKD 338 (682)
Q Consensus 309 ~a~~d~Vl~lDaD~-~~~pd~L~~lv~~~~~ 338 (682)
..+.|+++++++|+ .++++.+++++..+..
T Consensus 85 ~~~~d~vli~~~D~P~i~~~~i~~li~~~~~ 115 (233)
T cd02518 85 EYNADVVVRITGDCPLIDPEIIDAVIRLFLK 115 (233)
T ss_pred HcCCCEEEEeCCCCCCCCHHHHHHHHHHHHh
Confidence 24679999999999 7899999999998865
No 147
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=61.52 E-value=29 Score=34.97 Aligned_cols=103 Identities=17% Similarity=0.206 Sum_probs=62.4
Q ss_pred eecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhh
Q 005700 227 IPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNC 306 (682)
Q Consensus 227 IP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~ 306 (682)
+|..|....+...|+.+.+.... ++ |+|+-....+...+.++ +....++++.+...+...| -++++..+...
T Consensus 25 l~i~g~~pli~~~l~~l~~~g~~--~i-i~V~~~~~~~~i~~~~~----~~~~~~~~i~~i~~~~~~G-ta~al~~a~~~ 96 (248)
T PF00483_consen 25 LPIGGKYPLIDYVLENLANAGIK--EI-IVVVNGYKEEQIEEHLG----SGYKFGVKIEYIVQPEPLG-TAGALLQALDF 96 (248)
T ss_dssp SEETTEEEHHHHHHHHHHHTTCS--EE-EEEEETTTHHHHHHHHT----TSGGGTEEEEEEEESSSSC-HHHHHHHTHHH
T ss_pred ceecCCCcchhhhhhhhcccCCc--eE-EEEEeeccccccccccc----ccccccccceeeecccccc-hhHHHHHHHHH
Confidence 56677767888999999885532 43 34444333333333332 2223455666665455455 88888887775
Q ss_pred cccCC-ccEEEEEcCCCCCCHHHHHHHHHHhhc
Q 005700 307 SYVKD-YEFVAIFDADFQPNPDFLRRTVPHFKD 338 (682)
Q Consensus 307 ~~~a~-~d~Vl~lDaD~~~~pd~L~~lv~~~~~ 338 (682)
..... .+.++++.+|...+. .+..++....+
T Consensus 97 i~~~~~~~~~lv~~gD~i~~~-~~~~~l~~~~~ 128 (248)
T PF00483_consen 97 IEEEDDDEDFLVLNGDIIFDD-DLQDMLEFHRE 128 (248)
T ss_dssp HTTSEE-SEEEEETTEEEEST-THHHHHHHHHH
T ss_pred hhhccccceEEEEeccccccc-hhhhHHHhhhc
Confidence 31111 347999999998877 55666666654
No 148
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=60.63 E-value=98 Score=33.57 Aligned_cols=196 Identities=14% Similarity=0.101 Sum_probs=101.1
Q ss_pred CCeEEEEeecCCchHHHHHHHHH-HHcCCC-CCCceE-EEEEcCCCCh-hHHHHHHHHHHHHhhcCCeEEEEecc---CC
Q 005700 220 FPMVLVQIPMCNEKEVYQQSIAA-VCNLDW-PKSKIL-IQVLDDSDDP-TAQTLIKEEVLKWQEAGANIVYRHRI---LR 292 (682)
Q Consensus 220 ~P~VsVvIP~yNE~~~l~~tL~S-l~~qdY-P~~~l~-ViVvDD~sdd-~t~~~l~~~~~~~~~~~v~v~~~~r~---~~ 292 (682)
.|.+.++|.+.-+.-.-++.|+. -.++.. .+.++. ++++--.+++ .....+.++.+.+ -.++...-. .+
T Consensus 94 ~~~lLl~V~S~~~~farR~aiR~TW~~~~~v~~~~v~~~FLvG~~~~~~~~~~~l~~Ea~~y----gDIi~~df~Dty~n 169 (349)
T KOG2287|consen 94 PPELLLLVKSAPDNFARRNAIRKTWGNENNVRGGRVRVLFLVGLPSNEDKLNKLLADEARLY----GDIIQVDFEDTYFN 169 (349)
T ss_pred CceEEEEEecCCCCHHHHHHHHHHhcCccccCCCcEEEEEEecCCCcHHHHHHHHHHHHHHh----CCEEEEecccchhc
Confidence 46788888877665333222221 112221 122333 3344444433 2334444444433 233333222 23
Q ss_pred CCcchhh-HHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeec-CCCChHHHhhhhhhhhh
Q 005700 293 DGYKAGN-LKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVN-KDENLLTRLQDINLSFH 370 (682)
Q Consensus 293 ~g~Kaga-Ln~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n-~~~~l~t~~~~~~~~~~ 370 (682)
--.|.-+ +..+-.. ..+.+||+-+|+|+.++++-|.+.+..-. +|.-....|...... ...+--.++
T Consensus 170 ltlKtl~~l~w~~~~--cp~akfi~K~DDDvfv~~~~L~~~L~~~~-~~~~~~~~G~v~~~~~p~R~~~~Kw-------- 238 (349)
T KOG2287|consen 170 LTLKTLAILLWGVSK--CPDAKFILKIDDDVFVNPDNLLEYLDKLN-DPSSDLYYGRVIQNAPPIRDKTSKW-------- 238 (349)
T ss_pred hHHHHHHHHHHHHhc--CCcceEEEeccCceEEcHHHHHHHHhccC-CCCcceEEEeecccCCCCCCCCCCC--------
Confidence 3344433 2333332 45789999999999999988877776653 355556666543220 100101111
Q ss_pred hHHHHhhc-cccccccccccceEEEEeeeehhcC---CCCCCCchhHHHHHHHHHHc-CCeEEEecC
Q 005700 371 FEVEQQVN-GVFINFFGFNGTAGVWRIKALEDSG---GWMERTTVEDMDIAVRAHLR-GWKFIFLND 432 (682)
Q Consensus 371 ~~~~~~~~-~~~~~~~~~~G~~~~~Rr~al~~iG---G~~~~~~~ED~~l~~rl~~~-G~ki~y~~~ 432 (682)
+..+.... +..... ++|.+.++.+++.+.+- +.......||..++..+.+. |.+-.-.+.
T Consensus 239 yVp~~~y~~~~YP~Y--~sG~gYvis~~~a~~l~~~s~~~~~~~iEDV~~g~~l~~~~gi~~~~~~~ 303 (349)
T KOG2287|consen 239 YVPESEYPCSVYPPY--ASGPGYVISGDAARRLLKASKHLKFFPIEDVFVGGCLAEDLGIKPVNHPG 303 (349)
T ss_pred ccCHHHCCCCCCCCc--CCCceeEecHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCcccCcc
Confidence 01111111 112122 68999999999877652 23333457999999999998 766555544
No 149
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=60.36 E-value=1.1e+02 Score=34.48 Aligned_cols=98 Identities=11% Similarity=0.099 Sum_probs=58.9
Q ss_pred EeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHh
Q 005700 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMN 305 (682)
Q Consensus 226 vIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~ 305 (682)
++|..+. ..+..+++++.+.... ++ ++++.+. .+...+.+. + +..+.+.......| -++++..+++
T Consensus 25 l~pi~g~-pli~~~l~~l~~~gi~--~i-iiv~~~~-~~~i~~~~~-------~-~~~i~~~~~~~~~G-t~~al~~a~~ 90 (459)
T PRK14355 25 MHPLAGR-PMVSWPVAAAREAGAG--RI-VLVVGHQ-AEKVREHFA-------G-DGDVSFALQEEQLG-TGHAVACAAP 90 (459)
T ss_pred eceeCCc-cHHHHHHHHHHhcCCC--eE-EEEECCC-HHHHHHHhc-------c-CCceEEEecCCCCC-HHHHHHHHHH
Confidence 4555554 6888888888875432 43 3333332 232322221 1 22444543333334 6778888777
Q ss_pred hcccCCccEEEEEcCCC-CCCHHHHHHHHHHhhc
Q 005700 306 CSYVKDYEFVAIFDADF-QPNPDFLRRTVPHFKD 338 (682)
Q Consensus 306 ~~~~a~~d~Vl~lDaD~-~~~pd~L~~lv~~~~~ 338 (682)
.. ....|.++++++|. .+++..+++++..+..
T Consensus 91 ~l-~~~~~~vlv~~gD~p~~~~~~i~~l~~~~~~ 123 (459)
T PRK14355 91 AL-DGFSGTVLILCGDVPLLRAETLQGMLAAHRA 123 (459)
T ss_pred Hh-hccCCcEEEEECCccCcCHHHHHHHHHHHHh
Confidence 42 12257899999999 6789999999988764
No 150
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=59.50 E-value=87 Score=33.04 Aligned_cols=100 Identities=14% Similarity=0.158 Sum_probs=58.9
Q ss_pred EeecCCchHHHHHHHHHHHcCCCCCCceEEE-EEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHH
Q 005700 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQ-VLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAM 304 (682)
Q Consensus 226 vIP~yNE~~~l~~tL~Sl~~qdYP~~~l~Vi-VvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl 304 (682)
++|+++. ..+.-.|.++....- .+ |+ |+.....+...+.+. ...+.++++.|...+...| -++|+..+.
T Consensus 28 Llpv~gk-PmI~~~l~~l~~aGi--~~--I~ii~~~~~~~~~~~~l~----~g~~~g~~i~y~~q~~~~G-ta~Al~~a~ 97 (292)
T PRK15480 28 LLPIYDK-PMIYYPLSTLMLAGI--RD--ILIISTPQDTPRFQQLLG----DGSQWGLNLQYKVQPSPDG-LAQAFIIGE 97 (292)
T ss_pred EeEECCE-EHHHHHHHHHHHCCC--CE--EEEEecCCchHHHHHHHc----CccccCceeEEEECCCCCC-HHHHHHHHH
Confidence 5788887 688888888887643 23 43 333222233333322 1223466777765554445 888888887
Q ss_pred hhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhc
Q 005700 305 NCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKD 338 (682)
Q Consensus 305 ~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~ 338 (682)
.. ..+.+++++. +|+......+..++.....
T Consensus 98 ~~--i~~~~~~lv~-gD~i~~~~~l~~ll~~~~~ 128 (292)
T PRK15480 98 EF--IGGDDCALVL-GDNIFYGHDLPKLMEAAVN 128 (292)
T ss_pred HH--hCCCCEEEEE-CCeeeeccCHHHHHHHHHh
Confidence 75 2345666665 6665544457777776643
No 151
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=58.35 E-value=99 Score=30.85 Aligned_cols=95 Identities=14% Similarity=0.188 Sum_probs=54.9
Q ss_pred CchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhhcccC
Q 005700 231 NEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVK 310 (682)
Q Consensus 231 NE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~~~~a 310 (682)
+....+..+++.+.+.... ++ |+|+-+..+ ..+..+... ....++.... ...+ ...++..|++. ..
T Consensus 29 ~g~pli~~~l~~l~~~~~~-~~--ivvv~~~~~--~~~~~~~~~----~~~~~~~~~~--~~~~-~~~sv~~~l~~--~~ 94 (227)
T PRK00155 29 GGKPILEHTLEAFLAHPRI-DE--IIVVVPPDD--RPDFAELLL----AKDPKVTVVA--GGAE-RQDSVLNGLQA--LP 94 (227)
T ss_pred CCEEHHHHHHHHHHcCCCC-CE--EEEEeChHH--HHHHHHHhh----ccCCceEEeC--Ccch-HHHHHHHHHHh--CC
Confidence 4456888899888764322 24 333333222 112212111 1111222221 1122 56777778774 23
Q ss_pred CccEEEEEcCCC-CCCHHHHHHHHHHhhcC
Q 005700 311 DYEFVAIFDADF-QPNPDFLRRTVPHFKDN 339 (682)
Q Consensus 311 ~~d~Vl~lDaD~-~~~pd~L~~lv~~~~~~ 339 (682)
+.|+++++|+|. .++++.+++++..+..+
T Consensus 95 ~~d~vlv~~~D~P~i~~~~i~~li~~~~~~ 124 (227)
T PRK00155 95 DDDWVLVHDAARPFLTPDDIDRLIEAAEET 124 (227)
T ss_pred CCCEEEEccCccCCCCHHHHHHHHHHHhhC
Confidence 578999999999 68999999999988654
No 152
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=57.90 E-value=87 Score=31.21 Aligned_cols=98 Identities=16% Similarity=0.150 Sum_probs=53.0
Q ss_pred eecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhh
Q 005700 227 IPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNC 306 (682)
Q Consensus 227 IP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~ 306 (682)
+|..+. ..+..+++++.++.. .++ |+|+ . .+....+.+++..... ..++++.+.. ....| -++++..+...
T Consensus 24 l~i~g~-pli~~~l~~l~~~g~--~~i-vvv~-~-~~~~~~~~~~~~~~~~-~~~~~i~~~~-~~~~g-~~~~l~~a~~~ 94 (231)
T cd04183 24 IEVDGK-PMIEWVIESLAKIFD--SRF-IFIC-R-DEHNTKFHLDESLKLL-APNATVVELD-GETLG-AACTVLLAADL 94 (231)
T ss_pred eEECCE-EHHHHHHHhhhccCC--ceE-EEEE-C-hHHhhhhhHHHHHHHh-CCCCEEEEeC-CCCCc-HHHHHHHHHhh
Confidence 455565 688889999887652 233 3333 2 2111122222222111 2345554432 23334 67777777764
Q ss_pred cccCCccEEEEEcCCCCCCHHHHHHHHHH
Q 005700 307 SYVKDYEFVAIFDADFQPNPDFLRRTVPH 335 (682)
Q Consensus 307 ~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~ 335 (682)
..+.+.++++++|+..+.+....+..+
T Consensus 95 --l~~~~~~lv~~~D~i~~~~~~~~~~~~ 121 (231)
T cd04183 95 --IDNDDPLLIFNCDQIVESDLLAFLAAF 121 (231)
T ss_pred --cCCCCCEEEEecceeeccCHHHHHHHh
Confidence 223467888999998888765544333
No 153
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=57.74 E-value=95 Score=32.60 Aligned_cols=100 Identities=15% Similarity=0.117 Sum_probs=58.3
Q ss_pred EeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHh
Q 005700 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMN 305 (682)
Q Consensus 226 vIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~ 305 (682)
++|+++. ..+.-.|..+...... ++. +|+.....+...+.+ ....+.++++.|...+...| -++++..+..
T Consensus 24 Llpv~gk-PmI~~~L~~l~~aGi~--~I~-iv~~~~~~~~~~~~l----g~g~~~g~~i~~~~q~~~~G-ta~al~~a~~ 94 (286)
T TIGR01207 24 LLPIYDK-PMIYYPLSTLMLAGIR--DIL-IISTPQDTPRFQQLL----GDGSQWGVNLSYAVQPSPDG-LAQAFIIGED 94 (286)
T ss_pred eeEECCE-EhHHHHHHHHHHCCCC--EEE-EEecCCcHHHHHHHh----ccccccCceEEEEEccCCCC-HHHHHHHHHH
Confidence 5788887 6888888888876532 332 233222323333222 21123467777775544455 7888888877
Q ss_pred hcccCCccEEEEEcCCCCCCHHHHHHHHHHhh
Q 005700 306 CSYVKDYEFVAIFDADFQPNPDFLRRTVPHFK 337 (682)
Q Consensus 306 ~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~ 337 (682)
.. .+.+++++. +|+...+..+.+++....
T Consensus 95 ~l--~~~~~~li~-gD~i~~~~~l~~ll~~~~ 123 (286)
T TIGR01207 95 FI--GGDPSALVL-GDNIFYGHDLSDLLKRAA 123 (286)
T ss_pred Hh--CCCCEEEEE-CCEeccccCHHHHHHHHH
Confidence 52 344566654 776555556777776554
No 154
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=57.73 E-value=24 Score=35.85 Aligned_cols=92 Identities=17% Similarity=0.197 Sum_probs=51.8
Q ss_pred chHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhhcccCC
Q 005700 232 EKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVKD 311 (682)
Q Consensus 232 E~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~~~~a~ 311 (682)
..+.+.++|+++.+..-. + ++||-+|-.. +++++...+++. ..++++-++..+++ -...+-.|.++ .+
T Consensus 30 gr~ii~~~i~~L~~~gi~--e--~vvV~~g~~~---~lve~~l~~~~~-~~~iv~N~~y~ktN-~~~Sl~~akd~---~~ 97 (239)
T COG1213 30 GREIIYRTIENLAKAGIT--E--FVVVTNGYRA---DLVEEFLKKYPF-NAKIVINSDYEKTN-TGYSLLLAKDY---MD 97 (239)
T ss_pred CeEeHHHHHHHHHHcCCc--e--EEEEeccchH---HHHHHHHhcCCc-ceEEEeCCCcccCC-ceeEEeeehhh---hc
Confidence 346889999999886532 3 4555544322 234444443321 23444332222222 12233334442 23
Q ss_pred ccEEEEEcCCCCCCHHHHHHHHHHh
Q 005700 312 YEFVAIFDADFQPNPDFLRRTVPHF 336 (682)
Q Consensus 312 ~d~Vl~lDaD~~~~pd~L~~lv~~~ 336 (682)
++ ++++|+|+..+|+++++++..=
T Consensus 98 ~~-fii~~sD~vye~~~~e~l~~a~ 121 (239)
T COG1213 98 GR-FILVMSDHVYEPSILERLLEAP 121 (239)
T ss_pred Cc-EEEEeCCEeecHHHHHHHHhCc
Confidence 34 7889999999999999998753
No 155
>PF01697 Glyco_transf_92: Glycosyltransferase family 92; InterPro: IPR008166 This entry represents a region approximately 300 residues long that is of unknown function. The aligned region contains several conserved cysteine residues and several charged residues that may be catalytic residues.
Probab=57.63 E-value=59 Score=33.62 Aligned_cols=113 Identities=15% Similarity=0.127 Sum_probs=63.8
Q ss_pred eecCC-ch--HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEe-cc-----------C
Q 005700 227 IPMCN-EK--EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRH-RI-----------L 291 (682)
Q Consensus 227 IP~yN-E~--~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~-r~-----------~ 291 (682)
-|.|. |. ..+.+-|+.-..+. .++ +++-|.++++.+.++++.+.+ ...+.+.... +. .
T Consensus 8 ~pl~~~~~~~~~l~e~ie~~~~~G--~~~--~~~Y~~~~~~~~~~vL~~Y~~---~g~v~~~~w~~~~~~~~~~~~~~~~ 80 (285)
T PF01697_consen 8 SPLFGNEDDWLQLIEWIEYHRLLG--VDH--FYFYDNSSSPSVRKVLKEYER---SGYVEVIPWPLRPKFPDFPSPFPDP 80 (285)
T ss_pred cchhcccccHHHHHHHHHHHHHhC--CCE--EEEEEccCCHHHHHhHHHHhh---cCeEEEEEcccccccCCcccchhhh
Confidence 36776 53 36777777666663 234 556777788888888876543 2234443332 00 0
Q ss_pred CC----CcchhhHHHHHhhcccCCccEEEEEcCCCCCCHH----HHHHHHHHhhcCC--CeeEEEe
Q 005700 292 RD----GYKAGNLKSAMNCSYVKDYEFVAIFDADFQPNPD----FLRRTVPHFKDNE--ELGLVQA 347 (682)
Q Consensus 292 ~~----g~KagaLn~gl~~~~~a~~d~Vl~lDaD~~~~pd----~L~~lv~~~~~~p--~vg~Vqg 347 (682)
+. .+-..+.+.++.. +....+|++++|-|..+-|. ..+.+...+.+.+ .++.++.
T Consensus 81 ~~~~~~~~q~~a~~DCl~r-~~~~~~~v~f~DiDE~lvP~~~~~~~~~~~~~l~~~~~~~~~~~~~ 145 (285)
T PF01697_consen 81 NSSVERRGQIAAYNDCLLR-YRYRAKWVAFIDIDEFLVPTNAPTYPEEFEDLLREFPNISAGAYSF 145 (285)
T ss_pred hhHHHHHHHHHHHHHHHHH-hhhhceEEEEeccccEEEeccccchhhHHHHHHhhccccceEEEEE
Confidence 00 0134456666554 25678999999999955333 3555555555433 3444443
No 156
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=57.19 E-value=44 Score=34.85 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=18.2
Q ss_pred cCCccEEEEEcCCCCC--CHHHHHH
Q 005700 309 VKDYEFVAIFDADFQP--NPDFLRR 331 (682)
Q Consensus 309 ~a~~d~Vl~lDaD~~~--~pd~L~~ 331 (682)
.+..|=|+++|||+++ +|+.+-+
T Consensus 88 ~ssFeevllLDaD~vpl~~p~~lF~ 112 (271)
T PF11051_consen 88 FSSFEEVLLLDADNVPLVDPEKLFE 112 (271)
T ss_pred hCCcceEEEEcCCcccccCHHHHhc
Confidence 5788999999999976 6665544
No 157
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=57.12 E-value=1.7e+02 Score=32.40 Aligned_cols=165 Identities=13% Similarity=0.128 Sum_probs=84.4
Q ss_pred EEEEcCCC--ChhHHHHHHHHHHHHhhcCCeEEEEecc---CCCCcchhh-HHHHHhhcccCCccEEEEEcCCCCCCHHH
Q 005700 255 IQVLDDSD--DPTAQTLIKEEVLKWQEAGANIVYRHRI---LRDGYKAGN-LKSAMNCSYVKDYEFVAIFDADFQPNPDF 328 (682)
Q Consensus 255 ViVvDD~s--dd~t~~~l~~~~~~~~~~~v~v~~~~r~---~~~g~Kaga-Ln~gl~~~~~a~~d~Vl~lDaD~~~~pd~ 328 (682)
++|+--+. ++...+.++++.+.+. .++...-. .+-..|.-. +..+.+ .-+.+|++-.|+|+.+..+.
T Consensus 181 rFVIG~s~~~~~~ldr~Le~Ea~~yg----DIL~lDfvDsY~NLT~KTl~~f~wA~~---~~dAkF~mK~DDDvfVnv~~ 253 (408)
T PLN03193 181 RFVIGHSATSGGILDRAIEAEDRKHG----DFLRLDHVEGYLELSAKTKTYFATAVA---MWDADFYVKVDDDVHVNIAT 253 (408)
T ss_pred EEEeecCCCcchHHHHHHHHHHHHhC----CEEEEecccccccchHHHHHHHHHHHH---cCCCeEEEEcCCCceEcHHH
Confidence 45555443 3455556666655433 22322211 222234432 223333 34789999999999999988
Q ss_pred HHHHHHHhhcCCCeeEEEeeeEe---ecCCCChHHHhhhhhhhhhhHHHHhhccccccccccccceEEEEeeeehhcC--
Q 005700 329 LRRTVPHFKDNEELGLVQARWSF---VNKDENLLTRLQDINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEDSG-- 403 (682)
Q Consensus 329 L~~lv~~~~~~p~vg~Vqg~~~~---~n~~~~l~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~iG-- 403 (682)
|-..+..-...|+ +..|.... .+.... .+..-++. ..... ...+... ..|.+.++.+++...+-
T Consensus 254 L~~~L~~~~~~~r--lYiG~m~~gPvr~~~~~---ky~epe~w---~~~~~-~~~YPpy--AsG~gYVlS~DLa~~I~~n 322 (408)
T PLN03193 254 LGETLVRHRKKPR--VYIGCMKSGPVLSQKGV---RYHEPEYW---KFGEN-GNKYFRH--ATGQLYAISKDLASYISIN 322 (408)
T ss_pred HHHHHHhcCCCCC--EEEEecccCccccCCCC---cCcCcccc---cccCc-cccCCCC--CCcceEEehHHHHHHHHhC
Confidence 8777754332333 33332211 111110 00000000 00000 0111111 68999999999877653
Q ss_pred -CCCCCCchhHHHHHHHHHHcCCeEEEecCceeeecc
Q 005700 404 -GWMERTTVEDMDIAVRAHLRGWKFIFLNDVECQCEL 439 (682)
Q Consensus 404 -G~~~~~~~ED~~l~~rl~~~G~ki~y~~~a~~~~e~ 439 (682)
........||..++..+ .|..+.+..+....+..
T Consensus 323 ~~~L~~y~~EDV~vG~Wl--~~L~V~~vdd~~fcc~~ 357 (408)
T PLN03193 323 QHVLHKYANEDVSLGSWF--IGLDVEHIDDRRLCCGT 357 (408)
T ss_pred hhhhcccCcchhhhhhHh--ccCCceeeecccccCCC
Confidence 11122347999999988 47777788887754433
No 158
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=55.78 E-value=88 Score=30.77 Aligned_cols=89 Identities=8% Similarity=0.099 Sum_probs=53.6
Q ss_pred CchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhhcccC
Q 005700 231 NEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVK 310 (682)
Q Consensus 231 NE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~~~~a 310 (682)
+....++.+++.+... .++ |+|+-.. .+.. +. ....+++++ ..+....+-..++..|++. .
T Consensus 31 ~g~~ll~~~i~~l~~~---~~~--ivvv~~~-~~~~----~~----~~~~~~~~i--~~~~~~~G~~~si~~~l~~---~ 91 (200)
T PRK02726 31 QGVPLLQRVARIAAAC---ADE--VYIITPW-PERY----QS----LLPPGCHWL--REPPPSQGPLVAFAQGLPQ---I 91 (200)
T ss_pred CCEeHHHHHHHHHHhh---CCE--EEEECCC-HHHH----Hh----hccCCCeEe--cCCCCCCChHHHHHHHHHh---C
Confidence 4567888888888643 123 4444321 1111 11 112234433 2232222355778888884 3
Q ss_pred CccEEEEEcCCC-CCCHHHHHHHHHHhhc
Q 005700 311 DYEFVAIFDADF-QPNPDFLRRTVPHFKD 338 (682)
Q Consensus 311 ~~d~Vl~lDaD~-~~~pd~L~~lv~~~~~ 338 (682)
+.|+++++++|. .++++.+++++....+
T Consensus 92 ~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 120 (200)
T PRK02726 92 KTEWVLLLACDLPRLTVDVLQEWLQQLEN 120 (200)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 569999999999 6799999999998754
No 159
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=53.86 E-value=2.2e+02 Score=30.35 Aligned_cols=119 Identities=8% Similarity=-0.005 Sum_probs=58.7
Q ss_pred eEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEE-cCCCChhHHHHHHHHHHHHhhcCC--eEEEEeccCCC--C--
Q 005700 222 MVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVL-DDSDDPTAQTLIKEEVLKWQEAGA--NIVYRHRILRD--G-- 294 (682)
Q Consensus 222 ~VsVvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVv-DD~sdd~t~~~l~~~~~~~~~~~v--~v~~~~r~~~~--g-- 294 (682)
+++|+.+-.+ .+.+..+|.|++..+.- .+.+.|. ||..++...+.+++..... ...+ ++..+.-+..+ +
T Consensus 2 ~~~vv~~g~~-~~~~~~~lkSil~~n~~--~l~Fhi~~d~~~~~~~~~~l~~~~~~~-~~~i~~~i~~I~~P~~~~~~ws 77 (304)
T cd06430 2 HLAVVACGER-LEETLTMLKSAIVFSQK--PLRFHIFAEDQLKQSFKEKLDDWPELI-DRKFNYTLHPITFPSGNAAEWK 77 (304)
T ss_pred EEEEEEcCCc-HHHHHHHHHHHHHhCCC--CEEEEEEECCccCHHHHHHHHHHHHhc-cceeeeEEEEEecCccchhhhh
Confidence 3566666555 46778889998765532 3444444 4457777776666542211 1112 33333212111 1
Q ss_pred --cchhhHH-HHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhc--CCCeeEEE
Q 005700 295 --YKAGNLK-SAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKD--NEELGLVQ 346 (682)
Q Consensus 295 --~KagaLn-~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~--~p~vg~Vq 346 (682)
.|..+.. ..+.. +..+-|-|+.+|+|+++..+ |+++...|.+ +..++++.
T Consensus 78 ~l~~~~~y~RL~ip~-lLp~~dkvLYLD~Dii~~~d-I~eL~~~~~df~~~~~aA~v 132 (304)
T cd06430 78 KLFKPCAAQRLFLPS-LLPDVDSLLYVDTDILFLRP-VEEIWSFLKKFNSTQLAAMA 132 (304)
T ss_pred hcccHHHHHHHHHHH-HhhhhceEEEeccceeecCC-HHHHHHHHhhcCCCeEEEEE
Confidence 1111111 11111 12367899999999977543 4444444322 23455553
No 160
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=52.76 E-value=97 Score=30.59 Aligned_cols=94 Identities=15% Similarity=0.202 Sum_probs=54.1
Q ss_pred CchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhhcccC
Q 005700 231 NEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVK 310 (682)
Q Consensus 231 NE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~~~~a 310 (682)
+....+..+++.+.+.... +++ ++|+++...+.....+ . .. ..+.... ...+ ...++..|++.. .
T Consensus 25 ~gkpll~~~l~~l~~~~~~-~~i-vVv~~~~~~~~~~~~~----~---~~-~~~~~~~--~~~~-~~~sl~~~l~~~--~ 89 (217)
T TIGR00453 25 GGRPLLEHTLDAFLAHPAI-DEV-VVVVSPEDQEFFQKYL----V---AR-AVPKIVA--GGDT-RQDSVRNGLKAL--K 89 (217)
T ss_pred CCeEHHHHHHHHHhcCCCC-CEE-EEEEChHHHHHHHHHh----h---cC-CcEEEeC--CCch-HHHHHHHHHHhC--C
Confidence 4567888999988874322 243 3333322112221111 1 11 1122221 1112 446677788742 2
Q ss_pred CccEEEEEcCCC-CCCHHHHHHHHHHhhcC
Q 005700 311 DYEFVAIFDADF-QPNPDFLRRTVPHFKDN 339 (682)
Q Consensus 311 ~~d~Vl~lDaD~-~~~pd~L~~lv~~~~~~ 339 (682)
+.|+++++|+|. .++++.+++++..+..+
T Consensus 90 ~~d~vlv~~~D~P~i~~~~i~~li~~~~~~ 119 (217)
T TIGR00453 90 DAEWVLVHDAARPFVPKELLDRLLEALRKA 119 (217)
T ss_pred CCCEEEEccCccCCCCHHHHHHHHHHHhhC
Confidence 578999999999 78999999999988654
No 161
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=52.75 E-value=75 Score=32.24 Aligned_cols=89 Identities=16% Similarity=0.104 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccC--CC----CcchhhHHHHHhh-
Q 005700 234 EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRIL--RD----GYKAGNLKSAMNC- 306 (682)
Q Consensus 234 ~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~--~~----g~KagaLn~gl~~- 306 (682)
..+..++.|+.+.. +...+.++|+.++-++...+.+++.... .+..+....-.. .. ..+......-.+.
T Consensus 13 ~~~~~~l~Sl~~~~-~~~~~~~~il~~~is~~~~~~L~~~~~~---~~~~i~~~~i~~~~~~~~~~~~~~~~~~~y~rl~ 88 (248)
T cd04194 13 PYLAVTIKSILANN-SKRDYDFYILNDDISEENKKKLKELLKK---YNSSIEFIKIDNDDFKFFPATTDHISYATYYRLL 88 (248)
T ss_pred HHHHHHHHHHHhcC-CCCceEEEEEeCCCCHHHHHHHHHHHHh---cCCeEEEEEcCHHHHhcCCcccccccHHHHHHHH
Confidence 77888888988743 3235777888877777777777665442 234444332211 00 0111111111111
Q ss_pred --cccCCccEEEEEcCCCCCCH
Q 005700 307 --SYVKDYEFVAIFDADFQPNP 326 (682)
Q Consensus 307 --~~~a~~d~Vl~lDaD~~~~p 326 (682)
....+.|-++.+|+|+.+-.
T Consensus 89 l~~ll~~~~rvlylD~D~lv~~ 110 (248)
T cd04194 89 IPDLLPDYDKVLYLDADIIVLG 110 (248)
T ss_pred HHHHhcccCEEEEEeCCEEecC
Confidence 01236899999999997654
No 162
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=51.66 E-value=1.1e+02 Score=34.55 Aligned_cols=97 Identities=16% Similarity=0.242 Sum_probs=56.3
Q ss_pred eecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhh
Q 005700 227 IPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNC 306 (682)
Q Consensus 227 IP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~ 306 (682)
+|.-+ ...+..+++++.+... ++ |+|+-+...+...+.+ . ..++ .+...+...| .++++..+++.
T Consensus 30 lpi~g-kpli~~~l~~l~~~gi--~~--ivvv~~~~~~~i~~~~----~---~~~i--~~v~~~~~~G-t~~al~~~~~~ 94 (481)
T PRK14358 30 HPVAG-RPMVAWAVKAARDLGA--RK--IVVVTGHGAEQVEAAL----Q---GSGV--AFARQEQQLG-TGDAFLSGASA 94 (481)
T ss_pred cEECC-eeHHHHHHHHHHhCCC--Ce--EEEEeCCCHHHHHHHh----c---cCCc--EEecCCCcCC-cHHHHHHHHHH
Confidence 45545 4788888988877642 24 3333332333332222 1 2334 3433333344 67888777774
Q ss_pred cccCCccEEEEEcCCC-CCCHHHHHHHHHHhhcC
Q 005700 307 SYVKDYEFVAIFDADF-QPNPDFLRRTVPHFKDN 339 (682)
Q Consensus 307 ~~~a~~d~Vl~lDaD~-~~~pd~L~~lv~~~~~~ 339 (682)
....+.+ ++++++|. .+.++.+++++.....+
T Consensus 95 l~~~~~~-~lV~~gD~P~i~~~~l~~ll~~~~~~ 127 (481)
T PRK14358 95 LTEGDAD-ILVLYGDTPLLRPDTLRALVADHRAQ 127 (481)
T ss_pred hhCCCCc-EEEEeCCeeccCHHHHHHHHHHHHhc
Confidence 3112345 67799999 67899999999887653
No 163
>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan
Probab=51.38 E-value=1.4e+02 Score=32.02 Aligned_cols=46 Identities=17% Similarity=0.348 Sum_probs=33.3
Q ss_pred HHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhc---CCCeeEEEee
Q 005700 300 LKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKD---NEELGLVQAR 348 (682)
Q Consensus 300 Ln~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~---~p~vg~Vqg~ 348 (682)
.|.|.+ .++.++|+++|.|..+.++.-+.+...... .....+|-..
T Consensus 119 RNvAr~---~a~T~~v~~~DvD~~ps~~l~~~l~~~~~~~~~~~~~a~VvPa 167 (317)
T PF13896_consen 119 RNVARS---GARTDYVFLLDVDFLPSPGLYEKLLRFARRNIDKSKTAFVVPA 167 (317)
T ss_pred HHHHHH---hcCcceEEEecceeeeCcchHHHHHHHhhhhccCCceEEEEee
Confidence 566776 689999999999999999877776665543 3444555443
No 164
>KOG1022 consensus Acetylglucosaminyltransferase EXT2/exostosin 2 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=50.60 E-value=1.1e+02 Score=34.80 Aligned_cols=119 Identities=15% Similarity=0.134 Sum_probs=72.0
Q ss_pred CCCCeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcC--CCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCc
Q 005700 218 GFFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDD--SDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGY 295 (682)
Q Consensus 218 ~~~P~VsVvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD--~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~ 295 (682)
......+.+|-+||.-+.+...|....+. |.-+ .|+|+=+ +..+.. +..+ +...+.+... .+
T Consensus 440 ~~~qgFTlim~TYdR~d~L~k~v~~ys~v--PsL~-kIlVVWNnq~k~PP~-es~~------~~~~VPlr~r--~q---- 503 (691)
T KOG1022|consen 440 GHSQGFTLIMLTYDRVDLLKKLVKHYSRV--PSLK-KILVVWNNQGKNPPP-ESLE------PDIAVPLRFR--QQ---- 503 (691)
T ss_pred CcccceeeeeehHHHHHHHHHHHHHHhhC--CCcc-eEEEEecCCCCCCCh-hhcc------ccCCccEEEE--eh----
Confidence 34556899999999888888888877654 5422 2334433 222221 1222 1222333332 22
Q ss_pred chhhHHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeec
Q 005700 296 KAGNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVN 353 (682)
Q Consensus 296 KagaLn~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n 353 (682)
|...||.-++-...-+.|-|+-+|+|.+++-|-|.-.-.--++.|+- +|....++..
T Consensus 504 keNsLnNRF~~~peieT~AVL~IDDDIim~~ddldFgf~VWrefPD~-lVGF~pR~H~ 560 (691)
T KOG1022|consen 504 KENSLNNRFEPYPEIETEAVLEIDDDIIMPCDDLDFGFEVWREFPDR-LVGFVPRFHV 560 (691)
T ss_pred hhhhhhcccccCcccccceeEEecCceeeecchhHHHHHHHHhCccc-eeccCcceee
Confidence 55566665654345678899999999998888888777777776762 4444444433
No 165
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=50.46 E-value=1.9e+02 Score=30.56 Aligned_cols=103 Identities=14% Similarity=0.209 Sum_probs=59.8
Q ss_pred EeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHH---------------HHHh---hcCCeEEEE
Q 005700 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEV---------------LKWQ---EAGANIVYR 287 (682)
Q Consensus 226 vIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~---------------~~~~---~~~v~v~~~ 287 (682)
++|+.+.+ .+...++.+.+..-. + |+|+-....+...+.+.... +... +.++++.+.
T Consensus 28 LvpV~gkP-iI~~vl~~l~~~Gi~--~--ivivv~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 102 (297)
T TIGR01105 28 MLPIVDKP-MIQYIVDEIVAAGIK--E--IVLVTHASKNAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNV 102 (297)
T ss_pred eeEECCEE-HHHHHHHHHHHCCCC--E--EEEEecCChHHHHHHHhchHHHHHHHHHhcchhhhhhhhhcCCCCceEEEe
Confidence 46666655 888888888876532 4 34444434344443332100 0000 135667776
Q ss_pred eccCCCCcchhhHHHHHhhcccCCccEEEEEcCCCCCCH-------HHHHHHHHHhh
Q 005700 288 HRILRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPNP-------DFLRRTVPHFK 337 (682)
Q Consensus 288 ~r~~~~g~KagaLn~gl~~~~~a~~d~Vl~lDaD~~~~p-------d~L~~lv~~~~ 337 (682)
..+...| -++|+..+.... .+.+++++. +|+..++ -.+.+++..+.
T Consensus 103 ~q~~~lG-tg~Av~~a~~~l--~~~~flvv~-gD~l~~~~~~~~~~~~l~~li~~~~ 155 (297)
T TIGR01105 103 RQAQPLG-LGHSILCARPVV--GDNPFVVVL-PDIIIDDATADPLRYNLAAMIARFN 155 (297)
T ss_pred eCCCcCc-hHHHHHHHHHHh--CCCCEEEEE-CCeeccccccccchhHHHHHHHHHH
Confidence 5555555 888888888752 344666655 8877654 37888888665
No 166
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=49.84 E-value=1.4e+02 Score=27.04 Aligned_cols=52 Identities=19% Similarity=0.330 Sum_probs=34.8
Q ss_pred CCcchhhHHHHHhhcccCCccEEEEEcCCC-CCCHHHHHHHHHHhhcCCCeeEEEee
Q 005700 293 DGYKAGNLKSAMNCSYVKDYEFVAIFDADF-QPNPDFLRRTVPHFKDNEELGLVQAR 348 (682)
Q Consensus 293 ~g~KagaLn~gl~~~~~a~~d~Vl~lDaD~-~~~pd~L~~lv~~~~~~p~vg~Vqg~ 348 (682)
.+.-..-|+++++.. ...++-|+++.+|+ .++++.|+++...++++ ++|-|+
T Consensus 42 g~dLG~Rm~~a~~~~-~~g~~~vvliGsD~P~l~~~~l~~A~~~L~~~---d~VlgP 94 (122)
T PF09837_consen 42 GGDLGERMANAFQQA-ARGYEPVVLIGSDCPDLTPDDLEQAFEALQRH---DVVLGP 94 (122)
T ss_dssp SSSHHHHHHHHHHHH-HTT-SEEEEE-SS-TT--HHHHHHHHHHTTT----SEEEEE
T ss_pred CCCHHHHHHHHHHHH-HcCCCcEEEEcCCCCCCCHHHHHHHHHHhccC---CEEEee
Confidence 343555677788765 56788999999999 78999999999999753 345554
No 167
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=49.37 E-value=1.8e+02 Score=32.35 Aligned_cols=98 Identities=9% Similarity=0.148 Sum_probs=55.3
Q ss_pred eecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhh
Q 005700 227 IPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNC 306 (682)
Q Consensus 227 IP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~ 306 (682)
+|..+ ...+..+++++.+.... ++ ++|+. ...+...+.++ + ..+++++ ......| -++++..+++.
T Consensus 24 l~v~g-kpli~~~l~~l~~~g~~--~i-ivvv~-~~~~~i~~~~~----~--~~~i~~v--~~~~~~G-~~~sv~~~~~~ 89 (450)
T PRK14360 24 HPLGG-KSLVERVLDSCEELKPD--RR-LVIVG-HQAEEVEQSLA----H--LPGLEFV--EQQPQLG-TGHAVQQLLPV 89 (450)
T ss_pred CEECC-hhHHHHHHHHHHhCCCC--eE-EEEEC-CCHHHHHHHhc----c--cCCeEEE--EeCCcCC-cHHHHHHHHHH
Confidence 44444 47899999998876432 33 22333 22333322221 1 1123333 2222233 56677777664
Q ss_pred cccCCccEEEEEcCCC-CCCHHHHHHHHHHhhcC
Q 005700 307 SYVKDYEFVAIFDADF-QPNPDFLRRTVPHFKDN 339 (682)
Q Consensus 307 ~~~a~~d~Vl~lDaD~-~~~pd~L~~lv~~~~~~ 339 (682)
. ....+.++++|+|. .+.++.+++++..+.++
T Consensus 90 l-~~~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~ 122 (450)
T PRK14360 90 L-KGFEGDLLVLNGDVPLLRPETLEALLNTHRSS 122 (450)
T ss_pred h-hccCCcEEEEeCCccccCHHHHHHHHHHHHhc
Confidence 2 12235678899998 57899999999887653
No 168
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=49.25 E-value=1.2e+02 Score=29.70 Aligned_cols=97 Identities=13% Similarity=0.131 Sum_probs=53.3
Q ss_pred eecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhh
Q 005700 227 IPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNC 306 (682)
Q Consensus 227 IP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~ 306 (682)
+|..|. ..+..+++++.+.... + |+|+-+...+...+.+. +....+.++.+.......| -++++..+.+
T Consensus 24 l~~~g~-pli~~~l~~l~~~~~~--~--iivv~~~~~~~i~~~~~----~~~~~~~~i~~~~~~~~~g-~~~~l~~~~~- 92 (220)
T cd06426 24 LKVGGK-PILETIIDRFIAQGFR--N--FYISVNYLAEMIEDYFG----DGSKFGVNISYVREDKPLG-TAGALSLLPE- 92 (220)
T ss_pred CeECCc-chHHHHHHHHHHCCCc--E--EEEECccCHHHHHHHHC----CccccCccEEEEECCCCCc-chHHHHHHHh-
Confidence 455554 6888999988876433 4 33443332222222221 1112345566554333334 4666654433
Q ss_pred cccCCccEEEEEcCCCCCCHHHHHHHHHHhhc
Q 005700 307 SYVKDYEFVAIFDADFQPNPDFLRRTVPHFKD 338 (682)
Q Consensus 307 ~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~ 338 (682)
...|.++++.+|+..+. .+..++..+..
T Consensus 93 ---~~~~~~lv~~~D~i~~~-~~~~l~~~~~~ 120 (220)
T cd06426 93 ---KPTDPFLVMNGDILTNL-NYEHLLDFHKE 120 (220)
T ss_pred ---hCCCCEEEEcCCEeecc-CHHHHHHHHHh
Confidence 23577888899986655 45677777764
No 169
>PF03360 Glyco_transf_43: Glycosyltransferase family 43; InterPro: IPR005027 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 43 GT43 from CAZY comprises enzymes with only one known activities; beta-glucuronyltransferase(2.4.1 from EC);.; GO: 0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, 0016020 membrane; PDB: 2D0J_B 3CU0_A 1FGG_B 1KWS_B 1V84_B 1V83_B 1V82_A.
Probab=48.19 E-value=39 Score=33.81 Aligned_cols=73 Identities=15% Similarity=0.144 Sum_probs=41.8
Q ss_pred ceEEEEEcCCCC--hhHHHHHHHHHHHHhhcCCeEEEEeccCCCC------cc---hhhHHHHHhhcc----cCCccEEE
Q 005700 252 KILIQVLDDSDD--PTAQTLIKEEVLKWQEAGANIVYRHRILRDG------YK---AGNLKSAMNCSY----VKDYEFVA 316 (682)
Q Consensus 252 ~l~ViVvDD~sd--d~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g------~K---agaLn~gl~~~~----~a~~d~Vl 316 (682)
.++=|||+|+.. +.+.++++ +.|+...+..-..... .| ....|.|++... ....-+|.
T Consensus 10 ~l~WIVVEd~~~~~~~v~~lL~-------~sgl~y~hL~~~~p~~~~~~~~~~~rg~~qRn~AL~~ir~~~~~~~~GVVy 82 (207)
T PF03360_consen 10 PLHWIVVEDSEETTPLVARLLR-------RSGLPYTHLNVKTPSNFKDPRWIKPRGVHQRNAALRWIRNNANHRLDGVVY 82 (207)
T ss_dssp SEEEEEEESSSS--HHHHHHHH-------HHTSEEEEEE----HHHH-------TSHHHHHHHHHHHHSTTTSSS-EEEE
T ss_pred ceEEEEEeCCCCCCHHHHHHHH-------HcCCceeEEecCCccccccccccccccHHHHHHHHHHHHhcccCCCCcEEE
Confidence 466778999754 33455544 5677766664433211 12 336788888653 23445888
Q ss_pred EEcCCCCCCHHHHHH
Q 005700 317 IFDADFQPNPDFLRR 331 (682)
Q Consensus 317 ~lDaD~~~~pd~L~~ 331 (682)
|.|+|...+-...++
T Consensus 83 FaDDdNtYdl~LF~e 97 (207)
T PF03360_consen 83 FADDDNTYDLRLFDE 97 (207)
T ss_dssp E--TTSEE-HHHHHH
T ss_pred ECCCCCeeeHHHHHH
Confidence 999999999888877
No 170
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=47.36 E-value=36 Score=38.47 Aligned_cols=91 Identities=18% Similarity=0.205 Sum_probs=64.9
Q ss_pred CeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhH
Q 005700 221 PMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNL 300 (682)
Q Consensus 221 P~VsVvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaL 300 (682)
...+|++-+|..++++..+++.+-.+-|-+ + |+||=|+..+...++ .|++.|+.+.+++.++|. +
T Consensus 649 EQFTvVmLTYERe~VLm~sLeRL~gLPYLn-K--vvVVWNspk~P~ddl------~WPdigvPv~viR~~~Ns------L 713 (907)
T KOG2264|consen 649 EQFTVVMLTYEREAVLMGSLERLHGLPYLN-K--VVVVWNSPKDPPDDL------TWPDIGVPVEVIRVAENS------L 713 (907)
T ss_pred ceEEEEEEEehHHHHHHHHHHHhhCCcccc-e--EEEEeCCCCCChhcc------cCcCCCCceEEEEccccc------c
Confidence 358999999999999999999999988876 4 667778776665544 478889988877544321 2
Q ss_pred HHH-HhhcccCCccEEEEEcCCCCCCHH
Q 005700 301 KSA-MNCSYVKDYEFVAIFDADFQPNPD 327 (682)
Q Consensus 301 n~g-l~~~~~a~~d~Vl~lDaD~~~~pd 327 (682)
|.- +-. ...+.|-|+-+|+|..+--|
T Consensus 714 NNRFlPw-d~IETEAvLS~DDDahLrhd 740 (907)
T KOG2264|consen 714 NNRFLPW-DRIETEAVLSLDDDAHLRHD 740 (907)
T ss_pred cccccCc-hhhhheeeeecccchhhhhh
Confidence 221 111 14568899999999755443
No 171
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=45.84 E-value=1.5e+02 Score=30.45 Aligned_cols=93 Identities=12% Similarity=0.119 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhhcccCCc
Q 005700 233 KEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVKDY 312 (682)
Q Consensus 233 ~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~~~~a~~ 312 (682)
...+..+++.+.+.... +++ |+|+.+...+ .++...+ ..+.++.+. ..+.+ ..+.+..|++.. ..+.
T Consensus 52 kpll~~tl~~~~~~~~i-~~I-vVV~~~~~~~----~~~~~~~---~~~~~i~~v--~gg~~-r~~SV~~gl~~l-~~~~ 118 (252)
T PLN02728 52 QPIALYSLYTFARMPEV-KEI-VVVCDPSYRD----VFEEAVE---NIDVPLKFA--LPGKE-RQDSVFNGLQEV-DANS 118 (252)
T ss_pred eEHHHHHHHHHHhCCCC-CeE-EEEeCHHHHH----HHHHHHH---hcCCceEEc--CCCCc-hHHHHHHHHHhc-cCCC
Confidence 35678888888764222 243 3333322222 2222222 223344432 11222 456677788743 2357
Q ss_pred cEEEEEcCCC-CCCHHHHHHHHHHhhc
Q 005700 313 EFVAIFDADF-QPNPDFLRRTVPHFKD 338 (682)
Q Consensus 313 d~Vl~lDaD~-~~~pd~L~~lv~~~~~ 338 (682)
++|++.|+|. .++++.+.+++.....
T Consensus 119 ~~VlihDaarP~vs~~~i~~li~~~~~ 145 (252)
T PLN02728 119 ELVCIHDSARPLVTSADIEKVLKDAAV 145 (252)
T ss_pred CEEEEecCcCCCCCHHHHHHHHHHHhh
Confidence 8999999987 7899999999988765
No 172
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=44.51 E-value=1.9e+02 Score=30.16 Aligned_cols=194 Identities=15% Similarity=0.155 Sum_probs=100.9
Q ss_pred eecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhh
Q 005700 227 IPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNC 306 (682)
Q Consensus 227 IP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~ 306 (682)
+|+|+-+ .+.-++..+....-. ++ ++|++....+..++++-+ -.+-|+++.|...+.+.| -|.|.-.|-++
T Consensus 26 lpV~~KP-mi~y~l~~L~~aGI~--dI-~II~~~~~~~~~~~llGd----gs~~gv~itY~~Q~~p~G-lA~Av~~a~~f 96 (286)
T COG1209 26 LPVYDKP-MIYYPLETLMLAGIR--DI-LIVVGPEDKPTFKELLGD----GSDFGVDITYAVQPEPDG-LAHAVLIAEDF 96 (286)
T ss_pred ceecCcc-hhHhHHHHHHHcCCc--eE-EEEecCCchhhhhhhhcC----ccccCcceEEEecCCCCc-HHHHHHHHHhh
Confidence 7888854 566777777776543 33 345555555555554431 124589999998777777 77777766654
Q ss_pred cccCCccEEEEEcCCCCCCHHHHHHHHHHhhc-CCCeeEEEeeeEeecCCCChHHHhhhhhhhh----hhHHHHhhcccc
Q 005700 307 SYVKDYEFVAIFDADFQPNPDFLRRTVPHFKD-NEELGLVQARWSFVNKDENLLTRLQDINLSF----HFEVEQQVNGVF 381 (682)
Q Consensus 307 ~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~-~p~vg~Vqg~~~~~n~~~~l~t~~~~~~~~~----~~~~~~~~~~~~ 381 (682)
..+.++++++.+....+ -+.+.+..+.. +++. .+-. ..+.|+.. .-..++.- .-..++...-.
T Consensus 97 --v~~~~f~l~LGDNi~~~--~l~~~~~~~~~~~~ga-~i~~-~~V~dP~r-----fGV~e~d~~~~v~~l~EKP~~P~- 164 (286)
T COG1209 97 --VGDDDFVLYLGDNIFQD--GLSELLEHFAEEGSGA-TILL-YEVDDPSR-----YGVVEFDEDGKVIGLEEKPKEPK- 164 (286)
T ss_pred --cCCCceEEEecCceecc--ChHHHHHHHhccCCCc-EEEE-EEcCCccc-----ceEEEEcCCCcEEEeEECCCCCC-
Confidence 45677887776555555 56777776664 2222 2222 12223221 10011100 00001111110
Q ss_pred ccccccccceEEEEeeeehhcCCCCCCCch--hHHHHHHHHHHcCCeEEEecCce--eeeccCcCH
Q 005700 382 INFFGFNGTAGVWRIKALEDSGGWMERTTV--EDMDIAVRAHLRGWKFIFLNDVE--CQCELPESY 443 (682)
Q Consensus 382 ~~~~~~~G~~~~~Rr~al~~iGG~~~~~~~--ED~~l~~rl~~~G~ki~y~~~a~--~~~e~p~t~ 443 (682)
+...++| ..+|+.++++.+-...+..-+ |=.|.-..+..+|.++......- .-+-.|+++
T Consensus 165 -SNlAvtG-lY~~d~~Vf~~~~~ikPS~RGElEITd~i~~~i~~G~~~~~~~~~G~WlDtGt~~sl 228 (286)
T COG1209 165 -SNLAVTG-LYFYDPSVFEAIKQIKPSARGELEITDAIDLYIEKGYLVVAILIRGWWLDTGTPESL 228 (286)
T ss_pred -CceeEEE-EEEeChHHHHHHHcCCCCCCCceEehHHHHHHHHcCcEEEEEEccceEEecCChhhH
Confidence 1111233 566777777766444333222 34566666777888877665443 223345554
No 173
>KOG3917 consensus Beta-1,4-galactosyltransferase B4GALT7/SQV-3 [Carbohydrate transport and metabolism]
Probab=43.56 E-value=19 Score=35.97 Aligned_cols=148 Identities=19% Similarity=0.274 Sum_probs=83.9
Q ss_pred CCCeEEEEeecCCchHHHHHHHHHHHc----CCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCC
Q 005700 219 FFPMVLVQIPMCNEKEVYQQSIAAVCN----LDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDG 294 (682)
Q Consensus 219 ~~P~VsVvIP~yNE~~~l~~tL~Sl~~----qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g 294 (682)
...+..|++|-++.-|.+.+-+..+.+ |.-. -+|+|+..-+ + -|-+
T Consensus 72 S~HklavlVPfRdRfEELl~FvPHM~~FL~rq~v~---HHI~vlNQvD-~--------------------------fRFN 121 (310)
T KOG3917|consen 72 SYHKLAVLVPFRDRFEELLEFVPHMSKFLHRQNVS---HHILVLNQVD-P--------------------------FRFN 121 (310)
T ss_pred cceeEEEEechHHHHHHHHHhhHHHHHHHhhcCcc---eEEEEeeccC-c--------------------------ceec
Confidence 567899999988876666665554432 4322 2355554211 0 0111
Q ss_pred cchhhHHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEeeeEeecCCCChHHHhhhhhhhhhhHHH
Q 005700 295 YKAGNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVE 374 (682)
Q Consensus 295 ~KagaLn~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~~~l~t~~~~~~~~~~~~~~ 374 (682)
.|.-+|.|+..+ ..-+|||++-|-|-.+-.+-| ... .|..+ |+.....+. + .-.+++.
T Consensus 122 -RAsLINVGf~ea-s~~~DYiaMhDVDLLPlN~el---~Y~---fP~~~---gp~HiasP~--l-------HPkYHY~-- 179 (310)
T KOG3917|consen 122 -RASLINVGFNEA-SRLCDYIAMHDVDLLPLNPEL---PYD---FPGIG---GPRHIASPQ--L-------HPKYHYE-- 179 (310)
T ss_pred -hhhheecchhhh-cchhceeeecccccccCCCCC---CCC---CCccC---CcccccCcc--c-------Cchhhhh--
Confidence 444456666543 234899999999976532211 111 23221 222221111 0 0011111
Q ss_pred HhhccccccccccccceEEEEeeeehhcCCCCCCCc---hhHHHHHHHHHHcCCeEEE
Q 005700 375 QQVNGVFINFFGFNGTAGVWRIKALEDSGGWMERTT---VEDMDIAVRAHLRGWKFIF 429 (682)
Q Consensus 375 ~~~~~~~~~~~~~~G~~~~~Rr~al~~iGG~~~~~~---~ED~~l~~rl~~~G~ki~y 429 (682)
.+.|.-.+.+++.+++..|...... -||-++..|+.-.|.+..-
T Consensus 180 -----------~fvGGILll~~~hyk~~NGMSN~yWGWGlEDDEFy~RI~dagLqltR 226 (310)
T KOG3917|consen 180 -----------KFVGGILLLTLKHYKKLNGMSNKYWGWGLEDDEFYLRIIDAGLQLTR 226 (310)
T ss_pred -----------hhcceeEEeeHHHHHHhcCccccccccCcccchhhheeccccceEec
Confidence 1567788999999999988766533 4899999999999987643
No 174
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=42.45 E-value=2.1e+02 Score=27.82 Aligned_cols=92 Identities=10% Similarity=0.119 Sum_probs=56.2
Q ss_pred CchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhhcccC
Q 005700 231 NEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVK 310 (682)
Q Consensus 231 NE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~~~~a 310 (682)
+....+...++++.+.. -++ |+|+-+..++.+...++ ..+..+ . .....| -...+..|++.. .
T Consensus 25 ~GkplI~~vi~~l~~~~--i~~--I~Vv~~~~~~~~~~~l~-------~~~~~~--~-~~~g~G-~~~~l~~al~~~--~ 87 (183)
T TIGR00454 25 CGRCLIDHVLSPLLKSK--VNN--IIIATSPHTPKTEEYIN-------SAYKDY--K-NASGKG-YIEDLNECIGEL--Y 87 (183)
T ss_pred CCEEHHHHHHHHHHhCC--CCE--EEEEeCCCHHHHHHHHh-------hcCcEE--E-ecCCCC-HHHHHHHHhhcc--c
Confidence 34567888888887654 224 44444434445544433 222222 1 223334 556788888731 2
Q ss_pred CccEEEEEcCCC-CCCHHHHHHHHHHhhcC
Q 005700 311 DYEFVAIFDADF-QPNPDFLRRTVPHFKDN 339 (682)
Q Consensus 311 ~~d~Vl~lDaD~-~~~pd~L~~lv~~~~~~ 339 (682)
..+.++++-+|. .+.++.++.++..+...
T Consensus 88 ~~~~~lv~~~D~P~i~~~~i~~li~~~~~~ 117 (183)
T TIGR00454 88 FSEPFLVVSSDLINLRSKIIDSIVDYYYCI 117 (183)
T ss_pred CCCCEEEEeCCcCcCCHHHHHHHHHHHHhc
Confidence 356799999999 57999999999988653
No 175
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=41.88 E-value=3.5e+02 Score=27.69 Aligned_cols=99 Identities=11% Similarity=0.073 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEecc---CC-CCcch--hhHHH-HHh
Q 005700 233 KEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRI---LR-DGYKA--GNLKS-AMN 305 (682)
Q Consensus 233 ~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~---~~-~g~Ka--gaLn~-gl~ 305 (682)
...+.-++.|++..+ . ..+.++|++|+-+++..+.+++.++++. ..+.++.+... .. ...+. .+... .+.
T Consensus 13 ~~~~~v~l~Sll~nn-~-~~~~fyil~~~is~e~~~~l~~~~~~~~-~~i~~i~i~~~~~~~~~~~~~~~~~~y~rL~~~ 89 (248)
T cd06432 13 ERFLRIMMLSVMKNT-K-SPVKFWFIKNFLSPQFKEFLPEMAKEYG-FEYELVTYKWPRWLHKQTEKQRIIWGYKILFLD 89 (248)
T ss_pred HHHHHHHHHHHHHcC-C-CCEEEEEEeCCCCHHHHHHHHHHHHHhC-CceEEEEecChhhhhcccccchhHHHHHHHHHH
Confidence 367888999998864 2 3688999999888888888887766542 12232222100 00 01011 01111 111
Q ss_pred hcccCCccEEEEEcCCCCCCHHHHHHHHHH
Q 005700 306 CSYVKDYEFVAIFDADFQPNPDFLRRTVPH 335 (682)
Q Consensus 306 ~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~ 335 (682)
.....+.|-|+.+|+|+++.. -|+++...
T Consensus 90 ~lLP~~vdkvLYLD~Dilv~~-dL~eL~~~ 118 (248)
T cd06432 90 VLFPLNVDKVIFVDADQIVRT-DLKELMDM 118 (248)
T ss_pred HhhhhccCEEEEEcCCceecc-cHHHHHhc
Confidence 111245799999999997763 45555543
No 176
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=41.84 E-value=1.7e+02 Score=31.46 Aligned_cols=110 Identities=13% Similarity=0.123 Sum_probs=62.7
Q ss_pred CeEEEEeecCCch--HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCC---c
Q 005700 221 PMVLVQIPMCNEK--EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDG---Y 295 (682)
Q Consensus 221 P~VsVvIP~yNE~--~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g---~ 295 (682)
..+.|+..+ |+. ..+.-+|.|++.-+ ++..+.+.|++|+-+++..+.+++..+.+. ..+.+..+..+.-.+ .
T Consensus 24 ~~i~Iv~~~-D~ny~~~~~vsi~Sil~nn-~~~~~~f~Il~~~is~e~~~~l~~l~~~~~-~~i~~~~id~~~~~~~~~~ 100 (334)
T PRK15171 24 NSLDIAYGI-DKNFLFGCGVSIASVLLNN-PDKSLVFHVFTDYISDADKQRFSALAKQYN-TRINIYLINCERLKSLPST 100 (334)
T ss_pred CceeEEEEC-cHhhHHHHHHHHHHHHHhC-CCCCEEEEEEeCCCCHHHHHHHHHHHHhcC-CeEEEEEeCHHHHhCCccc
Confidence 456666655 544 78889999998643 344578888988888777777776655432 223333332111111 1
Q ss_pred chhhHHHHHhh----cccCCccEEEEEcCCCCCCHHHHHHHHH
Q 005700 296 KAGNLKSAMNC----SYVKDYEFVAIFDADFQPNPDFLRRTVP 334 (682)
Q Consensus 296 KagaLn~gl~~----~~~a~~d~Vl~lDaD~~~~pd~L~~lv~ 334 (682)
+......-.|. ....+.|-|+.+|+|+++..| |.++..
T Consensus 101 ~~~s~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~d-l~~L~~ 142 (334)
T PRK15171 101 KNWTYATYFRFIIADYFIDKTDKVLYLDADIACKGS-IKELID 142 (334)
T ss_pred CcCCHHHHHHHHHHHhhhhhcCEEEEeeCCEEecCC-HHHHHh
Confidence 11122111221 112368999999999987654 444443
No 177
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=41.18 E-value=2.7e+02 Score=31.08 Aligned_cols=93 Identities=11% Similarity=0.062 Sum_probs=53.6
Q ss_pred CchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhhcccC
Q 005700 231 NEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVK 310 (682)
Q Consensus 231 NE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~~~~a 310 (682)
+....++.+++++.+.. .++ |+|+-....+.. ++.. ...++++++ .+...| -++++..+++.....
T Consensus 31 ~gkpli~~~l~~l~~~~--~~~--iivv~~~~~~~i----~~~~---~~~~~~~v~--~~~~~G-t~~al~~a~~~l~~~ 96 (456)
T PRK14356 31 LGEPMLRFVYRALRPLF--GDN--VWTVVGHRADMV----RAAF---PDEDARFVL--QEQQLG-TGHALQCAWPSLTAA 96 (456)
T ss_pred CCCcHHHHHHHHHHhcC--CCc--EEEEECCCHHHH----HHhc---cccCceEEE--cCCCCC-cHHHHHHHHHHHhhc
Confidence 34567888888876643 224 333332222222 2211 123344433 233334 566777776643233
Q ss_pred CccEEEEEcCCC-CCCHHHHHHHHHHhh
Q 005700 311 DYEFVAIFDADF-QPNPDFLRRTVPHFK 337 (682)
Q Consensus 311 ~~d~Vl~lDaD~-~~~pd~L~~lv~~~~ 337 (682)
+.|.++++++|. .++++.++.++....
T Consensus 97 ~~d~vlv~~gD~P~i~~~~i~~li~~~~ 124 (456)
T PRK14356 97 GLDRVLVVNGDTPLVTTDTIDDFLKEAA 124 (456)
T ss_pred CCCcEEEEeCCcccCCHHHHHHHHHHHh
Confidence 468999999999 689999999998765
No 178
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=40.22 E-value=3e+02 Score=27.35 Aligned_cols=96 Identities=15% Similarity=0.198 Sum_probs=60.8
Q ss_pred CchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhhcccC
Q 005700 231 NEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVK 310 (682)
Q Consensus 231 NE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~~~~a 310 (682)
+....+..+++.+++-.+. + |+|+-... ..+..++. ....+.+++ .++.-..+-+..+..|++... .
T Consensus 29 ~g~plv~~~~~~a~~a~~~--~--vivV~g~~---~~~~~~a~---~~~~~~~~v--~npd~~~Gls~Sl~ag~~a~~-~ 95 (199)
T COG2068 29 DGKPLVRASAETALSAGLD--R--VIVVTGHR---VAEAVEAL---LAQLGVTVV--VNPDYAQGLSTSLKAGLRAAD-A 95 (199)
T ss_pred CCCcHHHHHHHHHHhcCCC--e--EEEEeCcc---hhhHHHhh---hccCCeEEE--eCcchhhhHhHHHHHHHHhcc-c
Confidence 3445677888877764432 4 55666544 11222221 123455554 344433448888999998542 2
Q ss_pred CccEEEEEcCCC-CCCHHHHHHHHHHhhcC
Q 005700 311 DYEFVAIFDADF-QPNPDFLRRTVPHFKDN 339 (682)
Q Consensus 311 ~~d~Vl~lDaD~-~~~pd~L~~lv~~~~~~ 339 (682)
++|.++++=+|. .+.|+.+.+++..+..+
T Consensus 96 ~~~~v~~~lgDmP~V~~~t~~rl~~~~~~~ 125 (199)
T COG2068 96 EGDGVVLMLGDMPQVTPATVRRLIAAFRAR 125 (199)
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcccc
Confidence 236999999999 69999999999999753
No 179
>PF03213 Pox_P35: Poxvirus P35 protein; InterPro: IPR004900 The Poxvirus P35 protein is an immunodominant envelope protein. It binds to heparan sulphate on the cell surface to provide virion attachment to target cell [].; GO: 0019031 viral envelope
Probab=40.09 E-value=1.5e+02 Score=31.51 Aligned_cols=46 Identities=13% Similarity=0.295 Sum_probs=38.3
Q ss_pred cCCccEEEEEcCCCCC-CHHHHHHHHHHhhcCCCeeEEEeeeEeecCC
Q 005700 309 VKDYEFVAIFDADFQP-NPDFLRRTVPHFKDNEELGLVQARWSFVNKD 355 (682)
Q Consensus 309 ~a~~d~Vl~lDaD~~~-~pd~L~~lv~~~~~~p~vg~Vqg~~~~~n~~ 355 (682)
..+.+|+++++.|..+ ++..+..++..|++ .+++++|-+..+.|..
T Consensus 116 ~~~~~yivVvEddnT~~~~~~l~~~I~aM~~-k~idilQLre~~~~~~ 162 (325)
T PF03213_consen 116 DPEDKYIVVVEDDNTLRDITTLHPIIKAMKK-KNIDILQLRETYHNSN 162 (325)
T ss_pred cCCCCeEEEEeCCCcccccHHHHHHHHHHHH-cCceEEEEehhhhccc
Confidence 4567899999999855 78999999999985 7899999988776554
No 180
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=39.66 E-value=1.4e+02 Score=29.24 Aligned_cols=95 Identities=20% Similarity=0.320 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhhcccCCc
Q 005700 233 KEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVKDY 312 (682)
Q Consensus 233 ~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~~~~a~~ 312 (682)
...+..+++.+.+..+.+ + |+|.-| ++...+.++ +.|..+..++.....+ ......++++....+.
T Consensus 24 kpLi~~~i~~a~~s~~~d-~--IvVaTd--~~~i~~~~~-------~~g~~v~~~~~~~~~~--~~r~~~~~~~~~~~~~ 89 (217)
T PF02348_consen 24 KPLIEYVIERAKQSKLID-E--IVVATD--DEEIDDIAE-------EYGAKVIFRRGSLADD--TDRFIEAIKHFLADDE 89 (217)
T ss_dssp EEHHHHHHHHHHHTTTTS-E--EEEEES--SHHHHHHHH-------HTTSEEEE--TTSSSH--HHHHHHHHHHHTCSTT
T ss_pred ccHHHHHHHHHHhCCCCC-e--EEEeCC--CHHHHHHHH-------HcCCeeEEcChhhcCC--cccHHHHHHHhhhhHH
Confidence 468899999999877654 4 444443 334444443 4556665543322222 2223334443212255
Q ss_pred cEEEEEcCCC-CCCHHHHHHHHHHhhcCCC
Q 005700 313 EFVAIFDADF-QPNPDFLRRTVPHFKDNEE 341 (682)
Q Consensus 313 d~Vl~lDaD~-~~~pd~L~~lv~~~~~~p~ 341 (682)
++++.+.+|+ ..+|..+.+++..+.++..
T Consensus 90 ~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~ 119 (217)
T PF02348_consen 90 DIVVRLQGDSPLLDPTSIDRAIEDIREANE 119 (217)
T ss_dssp SEEEEESTTETT--HHHHHHHHHHHHHSTT
T ss_pred hhccccCCeeeECCHHHHHHHHHHHhcCch
Confidence 6999999999 6799999999999987543
No 181
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=39.43 E-value=1.9e+02 Score=29.95 Aligned_cols=98 Identities=14% Similarity=0.148 Sum_probs=52.9
Q ss_pred EeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHh
Q 005700 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMN 305 (682)
Q Consensus 226 vIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~ 305 (682)
++|..+....++.+++.+.+..- .++ |+|+-+. ...+.+++..++ ...+++++. .+...| -++++..+..
T Consensus 26 ll~l~g~~~li~~~l~~l~~~~~-~~~--i~vvt~~---~~~~~v~~~l~~-~~~~~~ii~--ep~~~g-Ta~ai~~a~~ 95 (274)
T cd02509 26 FLKLFGDKSLLQQTLDRLKGLVP-PDR--ILVVTNE---EYRFLVREQLPE-GLPEENIIL--EPEGRN-TAPAIALAAL 95 (274)
T ss_pred EeEcCCCCcHHHHHHHHHhcCCC-CCc--EEEEech---HHHHHHHHHHhh-cCCCceEEE--CCCCCC-cHHHHHHHHH
Confidence 46667767899999999887531 224 3344332 122233333321 012344433 333344 6777777665
Q ss_pred hccc-CCccEEEEEcCCCCCC-HHHHHHHH
Q 005700 306 CSYV-KDYEFVAIFDADFQPN-PDFLRRTV 333 (682)
Q Consensus 306 ~~~~-a~~d~Vl~lDaD~~~~-pd~L~~lv 333 (682)
.... ...++++++.+|.... .+.+.+++
T Consensus 96 ~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l 125 (274)
T cd02509 96 YLAKRDPDAVLLVLPSDHLIEDVEAFLKAV 125 (274)
T ss_pred HHHhcCCCCeEEEecchhcccCHHHHHHHH
Confidence 4311 2457999999998765 33333333
No 182
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=39.32 E-value=2e+02 Score=31.27 Aligned_cols=99 Identities=16% Similarity=0.213 Sum_probs=66.5
Q ss_pred eecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhh
Q 005700 227 IPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNC 306 (682)
Q Consensus 227 IP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~ 306 (682)
+|.-|. ..+...++++.++... + |+++-..-.+...+.+. .....+.++.|.......| -++++..+.+.
T Consensus 27 lpI~gk-Pii~~~l~~L~~~Gv~--e--ivi~~~y~~~~i~~~~~----d~~~~~~~I~y~~e~~~lG-Tag~l~~a~~~ 96 (358)
T COG1208 27 LPIAGK-PLIEYVLEALAAAGVE--E--IVLVVGYLGEQIEEYFG----DGEGLGVRITYVVEKEPLG-TAGALKNALDL 96 (358)
T ss_pred ceeCCc-cHHHHHHHHHHHCCCc--E--EEEEeccchHHHHHHHh----cccccCCceEEEecCCcCc-cHHHHHHHHHh
Confidence 455544 4788888888886543 3 55553433333333332 2123468888876666666 88999988884
Q ss_pred cccCCccEEEEEcCCCCCCHHHHHHHHHHhhcC
Q 005700 307 SYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDN 339 (682)
Q Consensus 307 ~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~ 339 (682)
-..|-++++.+|...+-| +..++.+.+.+
T Consensus 97 ---l~~~~f~v~~GDv~~~~d-l~~l~~~~~~~ 125 (358)
T COG1208 97 ---LGGDDFLVLNGDVLTDLD-LSELLEFHKKK 125 (358)
T ss_pred ---cCCCcEEEEECCeeeccC-HHHHHHHHHhc
Confidence 233788899999999988 99999888764
No 183
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=39.23 E-value=3e+02 Score=30.72 Aligned_cols=95 Identities=9% Similarity=0.162 Sum_probs=55.8
Q ss_pred eecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhh
Q 005700 227 IPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNC 306 (682)
Q Consensus 227 IP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~ 306 (682)
+|.-+. ..+..+++++.+... +++ ++++.. .++...+.+ ..+.. +.......| -++++..+++.
T Consensus 25 l~i~Gk-pli~~~l~~l~~~gi--~~i-ivvv~~-~~~~i~~~~--------~~~~~--~~~~~~~~g-~~~al~~a~~~ 88 (458)
T PRK14354 25 HKVCGK-PMVEHVVDSVKKAGI--DKI-VTVVGH-GAEEVKEVL--------GDRSE--FALQEEQLG-TGHAVMQAEEF 88 (458)
T ss_pred CEeCCc-cHHHHHHHHHHhCCC--CeE-EEEeCC-CHHHHHHHh--------cCCcE--EEEcCCCCC-HHHHHHHHHHH
Confidence 455554 788999999887543 243 333332 222222221 11233 222222333 56777777764
Q ss_pred cccCCccEEEEEcCCC-CCCHHHHHHHHHHhhc
Q 005700 307 SYVKDYEFVAIFDADF-QPNPDFLRRTVPHFKD 338 (682)
Q Consensus 307 ~~~a~~d~Vl~lDaD~-~~~pd~L~~lv~~~~~ 338 (682)
. ....|.++++++|. .++++.+++++...+.
T Consensus 89 l-~~~~d~vlv~~~D~p~i~~~~l~~li~~~~~ 120 (458)
T PRK14354 89 L-ADKEGTTLVICGDTPLITAETLKNLIDFHEE 120 (458)
T ss_pred h-cccCCeEEEEECCccccCHHHHHHHHHHHHh
Confidence 2 12247899999998 6789999999988754
No 184
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=37.92 E-value=67 Score=32.03 Aligned_cols=44 Identities=14% Similarity=0.178 Sum_probs=28.2
Q ss_pred cCCch--HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHH
Q 005700 229 MCNEK--EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKE 272 (682)
Q Consensus 229 ~yNE~--~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~ 272 (682)
+.|+. ..+.-++.|+....-.+..+.|++++|+.+++..+.+++
T Consensus 5 ~~d~~y~~~~~v~i~Sl~~~~~~~~~~~i~i~~~~~~~~~~~~l~~ 50 (250)
T PF01501_consen 5 ACDDNYLEGAAVLIKSLLKNNPDPSNLHIYIITDDISEEDFEKLRA 50 (250)
T ss_dssp ECSGGGHHHHHHHHHHHHHTTTT-SSEEEEEEESSS-HHHHHHHHH
T ss_pred EeCHHHHHHHHHHHHHHHHhccccccceEEEecCCCCHHHHHHHhh
Confidence 45555 677788889888654324666777888776666655553
No 185
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=37.54 E-value=7.1e+02 Score=28.90 Aligned_cols=49 Identities=10% Similarity=0.253 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHcCCCCCCceEEEEEcCCC----ChhHHHHHHHHHHHHhhcCCeEEEE
Q 005700 234 EVYQQSIAAVCNLDWPKSKILIQVLDDSD----DPTAQTLIKEEVLKWQEAGANIVYR 287 (682)
Q Consensus 234 ~~l~~tL~Sl~~qdYP~~~l~ViVvDD~s----dd~t~~~l~~~~~~~~~~~v~v~~~ 287 (682)
+.+++.+....++ +..+ ++.|..+ |.+..+.+++..+++.++|.++...
T Consensus 460 ~~~~~~i~~~~~~--~~~~---~il~~~~v~~iD~ta~~al~~~~~~~~~~g~~~~i~ 512 (554)
T COG0659 460 DRLERALLGLIEE--RPER---VILDLKSVPYIDASAAEALEDLIKELERRGIQLLIV 512 (554)
T ss_pred HHHHHHHHHHHhc--cCCE---EEEEcccCCcCChhHHHHHHHHHHHHHHcCCEEEEe
Confidence 6677777766654 3222 3444432 5556677777788888888887765
No 186
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=37.42 E-value=2.9e+02 Score=28.04 Aligned_cols=106 Identities=16% Similarity=0.230 Sum_probs=66.7
Q ss_pred EEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHH
Q 005700 225 VQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAM 304 (682)
Q Consensus 225 VvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl 304 (682)
++.|.-.|. .|..+|+.+....+-+ ++.|--.|+.+|+...+.+. ..|..+. + |.-..-+....
T Consensus 21 vLlpL~~~p-mI~~~lervrks~~~d-~ivvATS~~~~d~~l~~~~~-------~~G~~vf---r----Gs~~dVL~Rf~ 84 (241)
T COG1861 21 VLLPLGGEP-MIEYQLERVRKSKDLD-KIVVATSDKEEDDALEEVCR-------SHGFYVF---R----GSEEDVLQRFI 84 (241)
T ss_pred hhhhcCCCc-hHHHHHHHHhcccccc-ceEEEecCCcchhHHHHHHH-------HcCeeEe---c----CCHHHHHHHHH
Confidence 345554444 5777888888766543 55455555566665554443 5676654 1 33444455544
Q ss_pred hhcccCCccEEEEEcCCC-CCCHHHHHHHHHHhhcCCCeeEEEe
Q 005700 305 NCSYVKDYEFVAIFDADF-QPNPDFLRRTVPHFKDNEELGLVQA 347 (682)
Q Consensus 305 ~~~~~a~~d~Vl~lDaD~-~~~pd~L~~lv~~~~~~p~vg~Vqg 347 (682)
..+..-+++.|+-+-+|+ .++|+.+..++..+.+ .+.+.+..
T Consensus 85 ~a~~a~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~-~gaDY~s~ 127 (241)
T COG1861 85 IAIKAYSADVVVRVTGDNPFLDPELVDAAVDRHLE-KGADYVSN 127 (241)
T ss_pred HHHHhcCCCeEEEeeCCCCCCCHHHHHHHHHHHHh-cCCccccc
Confidence 444356788999999999 6799999999887664 33345543
No 187
>PF04724 Glyco_transf_17: Glycosyltransferase family 17; InterPro: IPR006813 This family represents beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase (2.4.1.144 from EC). This enzyme transfers the bisecting GlcNAc to the core mannose of complex N-glycans. The addition of this residue is regulated during development and has functional consequences for receptor signalling, cell adhesion, and tumour progression [, ].; GO: 0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0016020 membrane
Probab=36.92 E-value=5.9e+02 Score=27.75 Aligned_cols=122 Identities=15% Similarity=0.163 Sum_probs=60.2
Q ss_pred eEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHH-H-HHHHHHHHHhhcCCeEEEEeccC--CCC---
Q 005700 222 MVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQ-T-LIKEEVLKWQEAGANIVYRHRIL--RDG--- 294 (682)
Q Consensus 222 ~VsVvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~-~-~l~~~~~~~~~~~v~v~~~~r~~--~~g--- 294 (682)
+|-=.+...||-+.++--+..+-.. - ..-|+|-.+.+-.+.. . ..++..+++.....+++|..-.. ..|
T Consensus 80 rV~D~~~f~~ElDlLeiRl~eL~~v--V--D~FVIvEs~~Tf~G~~KpL~f~~~~~~f~~~~~KIiy~~l~~~~~~g~~~ 155 (356)
T PF04724_consen 80 RVYDCFLFNNELDLLEIRLNELYDV--V--DYFVIVESNRTFTGKPKPLYFAENKERFAFFHDKIIYVTLDDPPEKGRKD 155 (356)
T ss_pred eEEEEEEeCChHHHHHHHHHHhhCc--c--eEEEEEEECCCcCCCCCCccHHHHHHHHHhhhcceEEEEecCcCCCCCCc
Confidence 4444455668878888777777432 1 2223333232211111 0 11112222333334555543222 122
Q ss_pred ------cchhhHHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCCeeEEEee
Q 005700 295 ------YKAGNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQAR 348 (682)
Q Consensus 295 ------~KagaLn~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~vg~Vqg~ 348 (682)
+...+++...+.....++|+|++-|.|.++.|+.|..+-. ....|.....+..
T Consensus 156 ~w~~E~~qR~~l~~l~~~~~~~~dDliivSDvDEIP~p~~l~~Lr~-cd~~p~~l~l~lr 214 (356)
T PF04724_consen 156 PWDRENYQRNALNGLLRLAGIQDDDLIIVSDVDEIPSPETLKFLRW-CDGFPEPLHLRLR 214 (356)
T ss_pred hhHHHHHHHHHHHHHhhhcCCCCCCEEEEcCcccccCHHHHHHHHh-cCCCCCeeEEEee
Confidence 1222343333323457899999999999999999876633 3223443333333
No 188
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=36.20 E-value=3.2e+02 Score=27.34 Aligned_cols=97 Identities=14% Similarity=0.118 Sum_probs=52.5
Q ss_pred ecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCC-CChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhh
Q 005700 228 PMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDS-DDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNC 306 (682)
Q Consensus 228 P~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~-sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~ 306 (682)
|.-+ ...+..+++++.+.... + |+++-+. ..+...+. .......++++.+.......| -++++..+...
T Consensus 27 pv~~-~pli~~~l~~l~~~gi~--~--i~vv~~~~~~~~~~~~----l~~~~~~~~~i~~~~~~~~~G-~~~al~~a~~~ 96 (240)
T cd02538 27 PVYD-KPMIYYPLSTLMLAGIR--E--ILIISTPEDLPLFKEL----LGDGSDLGIRITYAVQPKPGG-LAQAFIIGEEF 96 (240)
T ss_pred EECC-EEhHHHHHHHHHHCCCC--E--EEEEeCcchHHHHHHH----HhcccccCceEEEeeCCCCCC-HHHHHHHHHHh
Confidence 4443 56888888888875432 3 4444332 22222222 221112355666654333334 67788777764
Q ss_pred cccCCccEEEEEcCCCCCCHHHHHHHHHHhh
Q 005700 307 SYVKDYEFVAIFDADFQPNPDFLRRTVPHFK 337 (682)
Q Consensus 307 ~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~ 337 (682)
. +.|-++++.+|+...+..+.+++....
T Consensus 97 --~-~~~~~lv~~gD~~~~~~~~~~~~~~~~ 124 (240)
T cd02538 97 --I-GDDPVCLILGDNIFYGQGLSPILQRAA 124 (240)
T ss_pred --c-CCCCEEEEECCEEEccHHHHHHHHHHH
Confidence 2 234456668887665556777776654
No 189
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=35.93 E-value=2.3e+02 Score=27.55 Aligned_cols=107 Identities=13% Similarity=0.145 Sum_probs=57.3
Q ss_pred EeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHh----hcCCeEEEEec---cCCCCcchh
Q 005700 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQ----EAGANIVYRHR---ILRDGYKAG 298 (682)
Q Consensus 226 vIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~----~~~v~v~~~~r---~~~~g~Kag 298 (682)
++|..|....+..+++.+.+... .+ |+|+-+...+...+.+.+. ..|. ..++.+.+... +...-+-++
T Consensus 23 llpv~g~~pli~~~l~~l~~~gi--~~--iivv~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Gta~ 97 (200)
T cd02508 23 AVPFGGRYRLIDFPLSNMVNSGI--RN--VGVLTQYKSRSLNDHLGSG-KEWDLDRKNGGLFILPPQQRKGGDWYRGTAD 97 (200)
T ss_pred eeEECCeeeeHHHHHHHHHHCCC--CE--EEEEeCCChHHHHHHHhCC-CcccCCCCCCCEEEeCcccCCCCCcccCcHH
Confidence 56777764578888888887543 24 4444444444443333210 0010 11223332111 112223778
Q ss_pred hHHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhc
Q 005700 299 NLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKD 338 (682)
Q Consensus 299 aLn~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~ 338 (682)
++..+.......+.|.++++-+|... +..+.+++..+..
T Consensus 98 al~~a~~~i~~~~~~~~lv~~gD~v~-~~~~~~~l~~~~~ 136 (200)
T cd02508 98 AIYQNLDYIERSDPEYVLILSGDHIY-NMDYREMLDFHIE 136 (200)
T ss_pred HHHHHHHHHHhCCCCEEEEecCCEEE-ecCHHHHHHHHHH
Confidence 88888774322235778899999854 4557787776654
No 190
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=35.74 E-value=3.2e+02 Score=27.74 Aligned_cols=102 Identities=9% Similarity=0.068 Sum_probs=55.7
Q ss_pred EeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEe------cc---------
Q 005700 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRH------RI--------- 290 (682)
Q Consensus 226 vIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~------r~--------- 290 (682)
++|..+.. .+..+++++.+.+.. + |+|+-....+...+.+++..+. ..++++.+.. .+
T Consensus 23 llpv~~~p-~i~~~~~~~~~~gi~--~--i~iv~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (253)
T cd02524 23 MVEIGGRP-ILWHIMKIYSHYGHN--D--FILCLGYKGHVIKEYFLNYFLH--NSDVTIDLGTNRIELHNSDIEDWKVTL 95 (253)
T ss_pred EEEECCEE-HHHHHHHHHHhCCCc--e--EEEECCCCHHHHHHHHHhhhhh--cCceeEeecccceeeecccccccceee
Confidence 46666655 778888888776432 4 4444444444444443321110 1122222110 11
Q ss_pred ----CCCCcchhhHHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhc
Q 005700 291 ----LRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKD 338 (682)
Q Consensus 291 ----~~~g~KagaLn~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~ 338 (682)
...| .++++..+.+. ..+.|.++++++|...+.+. ..++.....
T Consensus 96 ~~~~~~~~-t~~al~~a~~~--~~~~~~~lv~~gD~i~~~dl-~~ll~~h~~ 143 (253)
T cd02524 96 VDTGLNTM-TGGRLKRVRRY--LGDDETFMLTYGDGVSDVNI-NALIEFHRS 143 (253)
T ss_pred cccCcccc-cHHHHHHHHHh--cCCCCeEEEEcCCEEECCCH-HHHHHHHHH
Confidence 0122 57777777774 22227899999999888776 788875543
No 191
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=35.16 E-value=3e+02 Score=27.09 Aligned_cols=90 Identities=16% Similarity=0.245 Sum_probs=58.5
Q ss_pred CCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhhccc
Q 005700 230 CNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYV 309 (682)
Q Consensus 230 yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~~~~ 309 (682)
.|....++..++.+..|. . .++|+-+...+. . ...+..++.- .....| --.++-.|++ .
T Consensus 26 ~~g~~lie~v~~~L~~~~----~-~vvi~~~~~~~~----~-------~~~g~~vv~D-~~~~~G-PL~Gi~~al~---~ 84 (192)
T COG0746 26 LNGRPLIEHVIDRLRPQV----D-VVVISANRNQGR----Y-------AEFGLPVVPD-ELPGFG-PLAGILAALR---H 84 (192)
T ss_pred eCCeEHHHHHHHHhcccC----C-EEEEeCCCchhh----h-------hccCCceeec-CCCCCC-CHHHHHHHHH---h
Confidence 455566777777776653 3 344555444332 1 1445565532 222224 6667788888 4
Q ss_pred CCccEEEEEcCCC-CCCHHHHHHHHHHhhcCC
Q 005700 310 KDYEFVAIFDADF-QPNPDFLRRTVPHFKDNE 340 (682)
Q Consensus 310 a~~d~Vl~lDaD~-~~~pd~L~~lv~~~~~~p 340 (682)
..+|+++++=+|+ .++++.+.++...+..++
T Consensus 85 ~~~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 85 FGTEWVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 6699999999999 789999999999997644
No 192
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=34.56 E-value=3.9e+02 Score=29.71 Aligned_cols=94 Identities=13% Similarity=0.081 Sum_probs=56.2
Q ss_pred EeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHh
Q 005700 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMN 305 (682)
Q Consensus 226 vIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~ 305 (682)
++|..+. ..+..+++++.+.. +++ +|+-+...+.. ++.. ..++.+ ...+...| -++++..+++
T Consensus 22 l~~v~gk-pli~~~l~~l~~~~---~~i--~vv~~~~~~~i----~~~~----~~~~~~--~~~~~~~g-~~~ai~~a~~ 84 (448)
T PRK14357 22 LHKISGK-PMINWVIDTAKKVA---QKV--GVVLGHEAELV----KKLL----PEWVKI--FLQEEQLG-TAHAVMCARD 84 (448)
T ss_pred eeEECCe-eHHHHHHHHHHhcC---CcE--EEEeCCCHHHH----HHhc----ccccEE--EecCCCCC-hHHHHHHHHH
Confidence 4555554 78888888887742 343 33333222222 2211 123443 22333334 6788888877
Q ss_pred hcccCCccEEEEEcCCC-CCCHHHHHHHHHHhhc
Q 005700 306 CSYVKDYEFVAIFDADF-QPNPDFLRRTVPHFKD 338 (682)
Q Consensus 306 ~~~~a~~d~Vl~lDaD~-~~~pd~L~~lv~~~~~ 338 (682)
.. .+.|.++++++|. .+.+..+++++..+++
T Consensus 85 ~l--~~~~~vlv~~gD~p~i~~~~i~~l~~~~~~ 116 (448)
T PRK14357 85 FI--EPGDDLLILYGDVPLISENTLKRLIEEHNR 116 (448)
T ss_pred hc--CcCCeEEEEeCCcccCCHHHHHHHHHHHHh
Confidence 42 3358899999998 5788889999988764
No 193
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=32.30 E-value=3.3e+02 Score=29.63 Aligned_cols=41 Identities=10% Similarity=0.143 Sum_probs=33.3
Q ss_pred cchhhHHHHHhhcccCCccEEEEEcCCC-CCCHHHHHHHHHHhhc
Q 005700 295 YKAGNLKSAMNCSYVKDYEFVAIFDADF-QPNPDFLRRTVPHFKD 338 (682)
Q Consensus 295 ~KagaLn~gl~~~~~a~~d~Vl~lDaD~-~~~pd~L~~lv~~~~~ 338 (682)
+..+.+..|++. .+.|+++++++|. .++++.+++++..+..
T Consensus 79 G~~~si~~gl~~---~~~~~vlv~~~D~P~i~~~~i~~L~~~~~~ 120 (366)
T PRK14489 79 GPLSGILAGLEH---ADSEYLFVVACDTPFLPENLVKRLSKALAI 120 (366)
T ss_pred ChHHHHHHHHHh---cCCCcEEEeeCCcCCCCHHHHHHHHHHhhc
Confidence 366778888883 4678999999998 6799999999998754
No 194
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=32.14 E-value=3.9e+02 Score=27.23 Aligned_cols=100 Identities=8% Similarity=0.040 Sum_probs=52.2
Q ss_pred EeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEE-------------------
Q 005700 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVY------------------- 286 (682)
Q Consensus 226 vIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~------------------- 286 (682)
++|.-+.. .+..+++++.+..- ++ |+|+-....+...+.+.+... ...+.++.+
T Consensus 24 llpv~g~p-ii~~~l~~l~~~gi--~~--i~iv~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (254)
T TIGR02623 24 MVEIGGKP-ILWHIMKIYSHHGI--ND--FIICCGYKGYVIKEYFANYFL--HMSDVTFHMADNTMEVHHKRVEPWRVTL 96 (254)
T ss_pred eeEECCEE-HHHHHHHHHHHCCC--CE--EEEEcCCCHHHHHHHHHhhhh--cccCeeEEecccccccccccCCccceee
Confidence 45666655 78888888887532 24 444444334444333322100 011233322
Q ss_pred EeccCCCCcchhhHHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhh
Q 005700 287 RHRILRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFK 337 (682)
Q Consensus 287 ~~r~~~~g~KagaLn~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~ 337 (682)
....... +-++++..+.+.. +.+.++++++|...+.| +++++....
T Consensus 97 ~~~~~~~-gt~~al~~~~~~i---~~e~flv~~gD~i~~~d-l~~~~~~h~ 142 (254)
T TIGR02623 97 VDTGEST-QTGGRLKRVREYL---DDEAFCFTYGDGVADID-IKALIAFHR 142 (254)
T ss_pred eecCCcC-CcHHHHHHHHHhc---CCCeEEEEeCCeEecCC-HHHHHHHHH
Confidence 1111122 3567887777642 34667799999976554 556666543
No 195
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=32.11 E-value=4.8e+02 Score=29.10 Aligned_cols=94 Identities=16% Similarity=0.136 Sum_probs=54.3
Q ss_pred eecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhh
Q 005700 227 IPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNC 306 (682)
Q Consensus 227 IP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~ 306 (682)
+|..+ ...++.+++++.+..- +++.+ ++. ...+. +++... ..++.+ ...+...| -++++..++..
T Consensus 28 ~~i~g-kpli~~~i~~l~~~gi--~~i~v-v~~-~~~~~----i~~~~~---~~~~~~--i~~~~~~G-t~~al~~a~~~ 92 (456)
T PRK09451 28 HTLAG-KPMVQHVIDAANELGA--QHVHL-VYG-HGGDL----LKQTLA---DEPLNW--VLQAEQLG-TGHAMQQAAPF 92 (456)
T ss_pred ceeCC-hhHHHHHHHHHHhcCC--CcEEE-EEC-CCHHH----HHHhhc---cCCcEE--EECCCCCC-cHHHHHHHHHh
Confidence 45544 5678888888876542 24433 332 22222 222211 223333 32233333 67888888764
Q ss_pred cccCCccEEEEEcCCC-CCCHHHHHHHHHHhh
Q 005700 307 SYVKDYEFVAIFDADF-QPNPDFLRRTVPHFK 337 (682)
Q Consensus 307 ~~~a~~d~Vl~lDaD~-~~~pd~L~~lv~~~~ 337 (682)
..+.|.++++++|. .+.++.+.+++....
T Consensus 93 --l~~~~~vlV~~gD~P~i~~~~i~~l~~~~~ 122 (456)
T PRK09451 93 --FADDEDILMLYGDVPLISVETLQRLRDAKP 122 (456)
T ss_pred --hccCCcEEEEeCCcccCCHHHHHHHHHHhh
Confidence 23457899999998 578888999887654
No 196
>PRK10122 GalU regulator GalF; Provisional
Probab=31.85 E-value=5.8e+02 Score=26.85 Aligned_cols=104 Identities=13% Similarity=0.201 Sum_probs=59.6
Q ss_pred EeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHH---------------HH---HHhhcCCeEEEE
Q 005700 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEE---------------VL---KWQEAGANIVYR 287 (682)
Q Consensus 226 vIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~---------------~~---~~~~~~v~v~~~ 287 (682)
.+|..+. ..+...++++.+..-. + |+|+-....+...+.+... .+ .....+.++.+.
T Consensus 28 llpi~gk-piI~~~l~~l~~~Gi~--~--i~iv~~~~~~~i~~~~~~~~~l~~~~~~~~k~~~l~~~~~~~~~~~~i~~~ 102 (297)
T PRK10122 28 MLPIVDK-PMIQYIVDEIVAAGIK--E--IVLVTHASKNAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNV 102 (297)
T ss_pred eeEECCE-EHHHHHHHHHHHCCCC--E--EEEEcCCChHHHHHHHhcchhHHHHHhhcchhhhHHhhhhccCCCceEEEe
Confidence 4566665 7888899999886532 4 3344333333333322110 00 000135667766
Q ss_pred eccCCCCcchhhHHHHHhhcccCCccEEEEEcCCCCCCHH-------HHHHHHHHhhc
Q 005700 288 HRILRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPNPD-------FLRRTVPHFKD 338 (682)
Q Consensus 288 ~r~~~~g~KagaLn~gl~~~~~a~~d~Vl~lDaD~~~~pd-------~L~~lv~~~~~ 338 (682)
..+...| -++++..+.... .+.+++++. +|+..+++ .+.+++.....
T Consensus 103 ~q~~~lG-tg~al~~a~~~l--~~~~fvvi~-gD~l~~~~~~~~~~~dl~~li~~h~~ 156 (297)
T PRK10122 103 RQGQPLG-LGHSILCARPAI--GDNPFVVVL-PDVVIDDASADPLRYNLAAMIARFNE 156 (297)
T ss_pred ecCCcCc-hHHHHHHHHHHc--CCCCEEEEE-CCeeccCccccccchhHHHHHHHHHH
Confidence 5555555 788888888752 345677666 88777543 57888876653
No 197
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=31.55 E-value=2.2e+02 Score=31.34 Aligned_cols=92 Identities=16% Similarity=0.212 Sum_probs=52.6
Q ss_pred CchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhhcccC
Q 005700 231 NEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVK 310 (682)
Q Consensus 231 NE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~~~~a 310 (682)
+....++.+++.+.+...- ++ |+|+-+..+. +..+...+ ... .+.+. ....+ ...++..|++. .
T Consensus 31 ~GkPll~~tl~~l~~~~~i-~~--IvVVv~~~~~---~~~~~~~~---~~~-~v~~v--~gG~~-r~~SV~~gL~~---l 94 (378)
T PRK09382 31 GGKPLWLHVLENLSSAPAF-KE--IVVVIHPDDI---AYMKKALP---EIK-FVTLV--TGGAT-RQESVRNALEA---L 94 (378)
T ss_pred CCeeHHHHHHHHHhcCCCC-Ce--EEEEeChHHH---HHHHHhcc---cCC-eEEEe--CCCch-HHHHHHHHHHh---c
Confidence 4567888999998875321 24 3333322222 12221111 111 12222 11112 45667788874 2
Q ss_pred CccEEEEEcCCC-CCCHHHHHHHHHHhhc
Q 005700 311 DYEFVAIFDADF-QPNPDFLRRTVPHFKD 338 (682)
Q Consensus 311 ~~d~Vl~lDaD~-~~~pd~L~~lv~~~~~ 338 (682)
+.|+|++.|+|. .++++.+++++..+..
T Consensus 95 ~~d~VLVhdadrPfv~~e~I~~li~~~~~ 123 (378)
T PRK09382 95 DSEYVLIHDAARPFVPKELIDRLIEALDK 123 (378)
T ss_pred CCCeEEEeeccccCCCHHHHHHHHHHhhc
Confidence 449999999998 6799999999988764
No 198
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=31.15 E-value=4.2e+02 Score=26.09 Aligned_cols=99 Identities=11% Similarity=0.118 Sum_probs=51.4
Q ss_pred EeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHh--h-cCCeEEEEeccCCCCcchhhHHH
Q 005700 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQ--E-AGANIVYRHRILRDGYKAGNLKS 302 (682)
Q Consensus 226 vIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~--~-~~v~v~~~~r~~~~g~KagaLn~ 302 (682)
++|.-|. ..+..+++.+.+... .++ ++|+.....+.. ++..+... . .+..+.+.......| -++++..
T Consensus 25 Llpv~g~-pli~~~l~~l~~~g~--~~i-ivv~~~~~~~~i----~~~l~~~~~~~~~~~~~~~~~~~~~~g-t~~al~~ 95 (214)
T cd04198 25 LLPVANK-PMIWYPLDWLEKAGF--EDV-IVVVPEEEQAEI----STYLRSFPLNLKQKLDEVTIVLDEDMG-TADSLRH 95 (214)
T ss_pred cCEECCe-eHHHHHHHHHHHCCC--CeE-EEEECHHHHHHH----HHHHHhcccccCcceeEEEecCCCCcC-hHHHHHH
Confidence 4566665 678888888887432 243 223322122223 33222211 1 122333333333334 7788888
Q ss_pred HHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhc
Q 005700 303 AMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKD 338 (682)
Q Consensus 303 gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~ 338 (682)
+... .+.+ ++++.+|...+.+ +..++..+..
T Consensus 96 ~~~~---i~~d-~lv~~~D~i~~~~-l~~~l~~h~~ 126 (214)
T cd04198 96 IRKK---IKKD-FLVLSCDLITDLP-LIELVDLHRS 126 (214)
T ss_pred HHhh---cCCC-EEEEeCccccccC-HHHHHHHHhc
Confidence 7773 2334 7888999765544 5666666654
No 199
>KOG2791 consensus N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism]
Probab=30.17 E-value=4.9e+02 Score=28.00 Aligned_cols=51 Identities=10% Similarity=0.117 Sum_probs=38.9
Q ss_pred CeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHH
Q 005700 221 PMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKE 272 (682)
Q Consensus 221 P~VsVvIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~ 272 (682)
.++.+++-+.|.+++++-+|+|+.+..--. +..+++.-|+--.++.++++.
T Consensus 117 ~~~vlV~qVHnRp~Ylr~lveSlrk~kGI~-~tLlifSHD~~~~eiN~~I~~ 167 (455)
T KOG2791|consen 117 DRVVLVLQVHNRPQYLRVLVESLRKVKGIS-ETLLIFSHDGYFEEINRIIES 167 (455)
T ss_pred ceEEEEEEEcCcHHHHHHHHHHHHhccCcc-ceEEEEeccchHHHHHHHHhh
Confidence 467888999999999999999998844333 334667888877777777764
No 200
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=29.76 E-value=4.2e+02 Score=28.38 Aligned_cols=98 Identities=19% Similarity=0.254 Sum_probs=56.0
Q ss_pred eecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCC-CChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHh
Q 005700 227 IPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDS-DDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMN 305 (682)
Q Consensus 227 IP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~-sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~ 305 (682)
+|.-+. ..+..+++++.+... .+ |+++-.. ..+...+.+. .....+.++.+.......| -++++..+.+
T Consensus 25 ~pv~g~-pli~~~l~~l~~~gi--~~--i~vv~~~~~~~~i~~~~~----~~~~~~~~~~~~~~~~~~G-~~~al~~a~~ 94 (353)
T TIGR01208 25 IPVANK-PILQYAIEDLAEAGI--TD--IGIVVGPVTGEEIKEIVG----EGERFGAKITYIVQGEPLG-LAHAVYTARD 94 (353)
T ss_pred cEECCE-eHHHHHHHHHHHCCC--CE--EEEEeCCCCHHHHHHHHh----cccccCceEEEEECCCCCC-HHHHHHHHHH
Confidence 355555 788889998887642 24 3334333 3333333332 1122345666654444444 7888888877
Q ss_pred hcccCCccEEEEEcCCCCCCHHHHHHHHHHhhc
Q 005700 306 CSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKD 338 (682)
Q Consensus 306 ~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~ 338 (682)
.. .+.+ ++++.+|...+ ..+.+++..+..
T Consensus 95 ~l--~~~~-~li~~gD~~~~-~~l~~l~~~~~~ 123 (353)
T TIGR01208 95 FL--GDDD-FVVYLGDNLIQ-DGISRFVKSFEE 123 (353)
T ss_pred hc--CCCC-EEEEECCeecC-ccHHHHHHHHHh
Confidence 42 3345 45667999776 456777776653
No 201
>KOG2571 consensus Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis]
Probab=28.19 E-value=1.6e+02 Score=35.72 Aligned_cols=43 Identities=16% Similarity=0.312 Sum_probs=32.9
Q ss_pred HhccCCCcchhHHHHHHHHHhHHHHHHHHHHHHHhhcCCcccEE
Q 005700 532 NILPAPKSFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWV 575 (682)
Q Consensus 532 ~~~~~~~~~~~~~~~llf~~~~s~~~~~a~l~gl~~~~~~~~W~ 575 (682)
.++.++..++.+.+...|..+++...+...++++.++ .+.+|+
T Consensus 730 ~ii~s~~ef~~l~~~v~Yil~lP~~~~vL~iyA~~n~-~d~SWG 772 (862)
T KOG2571|consen 730 AIIISPLEFHMLTPGVVYILLLPSWYFVLPIYAFCNF-HDVSWG 772 (862)
T ss_pred EEEecccchHhHHHHHHHHHHhHHHHhhhhheeeEEe-cccccC
Confidence 3455567788888888888888888887888888864 467898
No 202
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=27.95 E-value=3.5e+02 Score=27.56 Aligned_cols=104 Identities=15% Similarity=0.157 Sum_probs=57.4
Q ss_pred EeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHH------HHHHHh-----------hcCCeEEEEe
Q 005700 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKE------EVLKWQ-----------EAGANIVYRH 288 (682)
Q Consensus 226 vIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~------~~~~~~-----------~~~v~v~~~~ 288 (682)
.+|..+. ..+..+++++.+.... ++ +|+-+...+...+.+.. ...+.. ..+.++.+..
T Consensus 25 llpv~gk-pli~~~l~~l~~~gi~--~i--~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 99 (267)
T cd02541 25 MLPIVDK-PVIQYIVEEAVAAGIE--DI--IIVTGRGKRAIEDHFDRSYELEETLEKKGKTDLLEEVRIISDLANIHYVR 99 (267)
T ss_pred eeEECCE-EHHHHHHHHHHHCCCC--EE--EEEeCCchHHHHHHhCCcHHHHHHHHhcccHHHhhhhhcccCCceEEEEE
Confidence 3566665 7888899988876433 43 33333332323322211 000000 0134555554
Q ss_pred ccCCCCcchhhHHHHHhhcccCCccEEEEEcCCCCCCH-H-HHHHHHHHhhc
Q 005700 289 RILRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPNP-D-FLRRTVPHFKD 338 (682)
Q Consensus 289 r~~~~g~KagaLn~gl~~~~~a~~d~Vl~lDaD~~~~p-d-~L~~lv~~~~~ 338 (682)
.+...| -++++..+.+.. .+ +-++++.+|..... + .+++++.....
T Consensus 100 ~~~~~G-t~~al~~~~~~i--~~-~~~lv~~gD~~~~~~~~~~~~l~~~~~~ 147 (267)
T cd02541 100 QKEPLG-LGHAVLCAKPFI--GD-EPFAVLLGDDLIDSKEPCLKQLIEAYEK 147 (267)
T ss_pred cCCCCC-hHHHHHHHHHHh--CC-CceEEEECCeEEeCCchHHHHHHHHHHH
Confidence 444445 788888888742 23 55677788886654 2 68888887754
No 203
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=27.83 E-value=1.5e+02 Score=26.03 Aligned_cols=47 Identities=17% Similarity=0.309 Sum_probs=25.7
Q ss_pred HHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEE
Q 005700 236 YQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYR 287 (682)
Q Consensus 236 l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~ 287 (682)
=...|+.+++ +||+.++ |+|-|+|..| .++-.+..++++. .+..+++
T Consensus 51 K~~~i~~i~~-~fP~~kf-iLIGDsgq~D--peiY~~ia~~~P~-~i~ai~I 97 (100)
T PF09949_consen 51 KRDNIERILR-DFPERKF-ILIGDSGQHD--PEIYAEIARRFPG-RILAIYI 97 (100)
T ss_pred HHHHHHHHHH-HCCCCcE-EEEeeCCCcC--HHHHHHHHHHCCC-CEEEEEE
Confidence 3445566664 7898775 6677776544 2333344444433 3444554
No 204
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=27.41 E-value=5.2e+02 Score=25.37 Aligned_cols=103 Identities=11% Similarity=0.053 Sum_probs=53.0
Q ss_pred EeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhc--CCeEEEEeccCCCCcchhhHHHH
Q 005700 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEA--GANIVYRHRILRDGYKAGNLKSA 303 (682)
Q Consensus 226 vIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~--~v~v~~~~r~~~~g~KagaLn~g 303 (682)
++|..|. ..|...++++.+..-. + |+|+-+...+...+.+++.. .|... +..+.+...+...| -++++...
T Consensus 25 llpi~g~-piI~~~l~~l~~~Gi~--~--I~iv~~~~~~~i~~~l~~~~-~~~~~~~~~~i~~~~~~~~~~-~~~al~~~ 97 (217)
T cd04197 25 LLPLANV-PLIDYTLEFLALNGVE--E--VFVFCCSHSDQIKEYIEKSK-WSKPKSSLMIVIIIMSEDCRS-LGDALRDL 97 (217)
T ss_pred eeEECCE-ehHHHHHHHHHHCCCC--e--EEEEeCCCHHHHHHHHhhcc-ccccccCcceEEEEeCCCcCc-cchHHHHH
Confidence 4677777 5889999999886532 4 44444444444444443211 01100 23455543332222 44454332
Q ss_pred HhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhc
Q 005700 304 MNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKD 338 (682)
Q Consensus 304 l~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~ 338 (682)
.... .-+ +.++++.+|...+.+ +..++.....
T Consensus 98 ~~~~-~~~-~~flv~~gD~i~~~d-l~~~l~~h~~ 129 (217)
T cd04197 98 DAKG-LIR-GDFILVSGDVVSNID-LKEILEEHKE 129 (217)
T ss_pred hhcc-ccC-CCEEEEeCCeeeccC-HHHHHHHHHH
Confidence 2110 112 446689999877655 5666766653
No 205
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=25.92 E-value=5.1e+02 Score=26.13 Aligned_cols=93 Identities=16% Similarity=0.235 Sum_probs=55.6
Q ss_pred CchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhhcccC
Q 005700 231 NEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVK 310 (682)
Q Consensus 231 NE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~~~~a 310 (682)
+...++..|++.+.+...-. + .|+|+.++..+...+++. +..+.++ . .+ .........|++.. ..
T Consensus 26 ~Gkpvl~~tl~~f~~~~~i~-~-Ivvv~~~~~~~~~~~~~~-------~~~v~iv--~--GG-~tR~~SV~ngL~~l-~~ 90 (221)
T PF01128_consen 26 GGKPVLEYTLEAFLASPEID-E-IVVVVPPEDIDYVEELLS-------KKKVKIV--E--GG-ATRQESVYNGLKAL-AE 90 (221)
T ss_dssp TTEEHHHHHHHHHHTTTTES-E-EEEEESGGGHHHHHHHHH-------HTTEEEE--E-----SSHHHHHHHHHHCH-HC
T ss_pred CCeEeHHHHHHHHhcCCCCC-e-EEEEecchhHHHHHHhhc-------CCCEEEe--c--CC-hhHHHHHHHHHHHH-Hc
Confidence 34578999999998753322 3 344555444444444333 2333332 2 11 12445666777753 23
Q ss_pred CccEEEEEcCCC-CCCHHHHHHHHHHhhc
Q 005700 311 DYEFVAIFDADF-QPNPDFLRRTVPHFKD 338 (682)
Q Consensus 311 ~~d~Vl~lDaD~-~~~pd~L~~lv~~~~~ 338 (682)
++|+|++-|+=- .++++.+.+++..+..
T Consensus 91 ~~d~VlIHDaaRPfv~~~~i~~~i~~~~~ 119 (221)
T PF01128_consen 91 DCDIVLIHDAARPFVSPELIDRVIEAARE 119 (221)
T ss_dssp TSSEEEEEETTSTT--HHHHHHHHHHHHH
T ss_pred CCCEEEEEccccCCCCHHHHHHHHHHHHh
Confidence 459999999976 7799999999999975
No 206
>COG3181 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.11 E-value=5e+02 Score=27.85 Aligned_cols=111 Identities=14% Similarity=0.067 Sum_probs=57.1
Q ss_pred eEEEEeecCCch--HHHHHHHHHHHcCCCCCCceEEEEEcC-CCChhHHHHHHHHHHHHhhcCCeEEEEeccCC------
Q 005700 222 MVLVQIPMCNEK--EVYQQSIAAVCNLDWPKSKILIQVLDD-SDDPTAQTLIKEEVLKWQEAGANIVYRHRILR------ 292 (682)
Q Consensus 222 ~VsVvIP~yNE~--~~l~~tL~Sl~~qdYP~~~l~ViVvDD-~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~------ 292 (682)
.+.+|+|.---. +.+.+++.+.+..++.. . | +||| +.-...... .+... - ..|..+.......+
T Consensus 29 ~it~Ivp~~~GGg~D~~aR~~~~~l~k~lg~-~--v-~V~N~pGagG~ia~-~~va~-a-~pG~t~~l~~~~~~~~~~~~ 101 (319)
T COG3181 29 PITIIVPAAAGGGTDQTARALAESLSKELGQ-P--V-VVDNKPGAGGAIAA-GAVAK-A-APGYTILLIAGSTPALLLPI 101 (319)
T ss_pred CeEEEEecCCCChHHHHHHHHHHHHHHHhCC-C--E-EEEecCCCcchHHH-HHHHh-c-CCCCceEEEecCcccccchh
Confidence 488888865443 88888888888766543 3 3 4455 222222211 11111 1 22444443322110
Q ss_pred CCcch-hhHHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhcCCC
Q 005700 293 DGYKA-GNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEE 341 (682)
Q Consensus 293 ~g~Ka-gaLn~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~~p~ 341 (682)
.+.+. .-++..--.+.......++.+++|..+ +.+.+++..++.||+
T Consensus 102 ~~~~~~~~~~D~~pva~v~~~p~~l~v~~~s~~--~t~~dlv~~~k~~p~ 149 (319)
T COG3181 102 LGGLPYYKLKDFTPVASLVSDPGVLVVRADSPY--KTLKDLVAYAKADPG 149 (319)
T ss_pred hccCCCCchhhceehhheecccceEEEeCCCCc--ccHHHHHHHHHhCCC
Confidence 00011 111111000113456678888998654 468899999999998
No 207
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=21.69 E-value=3.3e+02 Score=29.96 Aligned_cols=105 Identities=18% Similarity=0.199 Sum_probs=57.3
Q ss_pred EeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEe---ccCC-----CCcch
Q 005700 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRH---RILR-----DGYKA 297 (682)
Q Consensus 226 vIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~---r~~~-----~g~Ka 297 (682)
++|.-|....|...|+++.+.... + |+++-....+...+.+. +.|...+....+.. ...+ .-+-+
T Consensus 30 llPv~gk~plI~~~L~~l~~~Gi~--~--i~iv~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~lGta 102 (407)
T PRK00844 30 AVPFGGSYRLIDFVLSNLVNSGYL--R--IYVLTQYKSHSLDRHIS---QTWRLSGLLGNYITPVPAQQRLGKRWYLGSA 102 (407)
T ss_pred ceeeCCcceEhHHHHHHHHHCCCC--E--EEEEeccCHHHHHHHHH---hCcCccccCCCeEEECCcccCCCCCcccCCH
Confidence 456666546788888888876533 3 44555555555554443 11221122222221 1111 12367
Q ss_pred hhHHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhhc
Q 005700 298 GNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKD 338 (682)
Q Consensus 298 gaLn~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~~ 338 (682)
+|+..+.........|+++++.+|+..+. .+.+++.....
T Consensus 103 ~al~~a~~~i~~~~~~~~lv~~gD~v~~~-dl~~l~~~h~~ 142 (407)
T PRK00844 103 DAIYQSLNLIEDEDPDYVVVFGADHVYRM-DPRQMVDFHIE 142 (407)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCCEEEcC-CHHHHHHHHHh
Confidence 88877776532223478999999987654 45666665543
No 208
>COG1981 Predicted membrane protein [Function unknown]
Probab=21.60 E-value=3.5e+02 Score=25.33 Aligned_cols=53 Identities=26% Similarity=0.361 Sum_probs=29.2
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCcchhhhhhhhhHHHHHH
Q 005700 45 LLLKAHKAAGCLTSIASAFFSLGSLVRRRVAAGRTDQPPTSADTHEIQKLRTRFFYSCIK 104 (682)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (682)
+..||-...+-++|.|.-+- |-+-. |-+-..++ ..+..|+=+.-.|.|||+|.
T Consensus 9 ~W~KafHiiavisWmAglfY-LPRlF---Vyha~a~~---~~~~~~~~~vMerrLyr~i~ 61 (149)
T COG1981 9 LWVKAFHLIAVISWMAGLFY-LPRLF---VYHAEADG---GSELVETLKVMERRLYRFIM 61 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHH---HHHHhccC---ChhHHHHHHHHHHHHHHHhC
Confidence 34688899999999986553 32211 12222221 11223343444677999964
No 209
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=21.34 E-value=7.3e+02 Score=25.01 Aligned_cols=104 Identities=12% Similarity=0.123 Sum_probs=55.9
Q ss_pred EeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHH---------------HHHh--hcCCeEEEEe
Q 005700 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEV---------------LKWQ--EAGANIVYRH 288 (682)
Q Consensus 226 vIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~---------------~~~~--~~~v~v~~~~ 288 (682)
++|.-+. ..+..+++++.+..-. + |+|+-....+...+.+.... +... ..+.++.+..
T Consensus 25 llpi~g~-pli~~~l~~l~~~gi~--~--v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 99 (260)
T TIGR01099 25 MLPIVDK-PLIQYVVEEAVEAGIE--D--ILIVTGRGKRAIEDHFDTSYELEHQLEKRGKEELLKEVRSISPLATIFYVR 99 (260)
T ss_pred eEEECCE-EHHHHHHHHHHhCCCC--E--EEEEeCCcHHHHHHHhcccHHHHHHHHhhhhHHHHHHhhhccccceEEEEe
Confidence 3566665 7888888888775432 4 44444433333333322100 0000 0123455543
Q ss_pred ccCCCCcchhhHHHHHhhcccCCccEEEEEcCCCCCCH--HHHHHHHHHhhc
Q 005700 289 RILRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPNP--DFLRRTVPHFKD 338 (682)
Q Consensus 289 r~~~~g~KagaLn~gl~~~~~a~~d~Vl~lDaD~~~~p--d~L~~lv~~~~~ 338 (682)
.....| -++++..+.... +.+-++++-+|..... +.+.+++.....
T Consensus 100 ~~~~~G-~~~al~~~~~~~---~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~ 147 (260)
T TIGR01099 100 QKEQKG-LGHAVLCAEPFV---GDEPFAVILGDDIVVSEEPALKQMIDLYEK 147 (260)
T ss_pred cCCCCC-HHHHHHHHHHhh---CCCCEEEEeccceecCCcHHHHHHHHHHHH
Confidence 333344 778888887742 3345677778876644 378888887754
No 210
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=21.31 E-value=5.8e+02 Score=28.03 Aligned_cols=91 Identities=15% Similarity=0.222 Sum_probs=47.7
Q ss_pred eecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEeccCCCCcchhhHHHHHhh
Q 005700 227 IPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNC 306 (682)
Q Consensus 227 IP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~~~~g~KagaLn~gl~~ 306 (682)
+|..+ ...+..+++.+.+. ..++.| ++ ....+...+.++ +. ..++++.+.......| .++++.. .
T Consensus 25 lpi~g-kPli~~~i~~l~~~---~~~i~I-vv-~~~~~~i~~~~~----~~-~~~v~~~~~~~~~~~g-t~~al~~-~-- 89 (430)
T PRK14359 25 HTICG-KPMLFYILKEAFAI---SDDVHV-VL-HHQKERIKEAVL----EY-FPGVIFHTQDLENYPG-TGGALMG-I-- 89 (430)
T ss_pred CEECC-ccHHHHHHHHHHHc---CCcEEE-EE-CCCHHHHHHHHH----hc-CCceEEEEecCccCCC-cHHHHhh-c--
Confidence 45544 56777888887764 124433 33 222333333322 11 1134444332222233 5566644 2
Q ss_pred cccCCccEEEEEcCCC-CCCHHHHHHHHH
Q 005700 307 SYVKDYEFVAIFDADF-QPNPDFLRRTVP 334 (682)
Q Consensus 307 ~~~a~~d~Vl~lDaD~-~~~pd~L~~lv~ 334 (682)
....|.++++++|. ...++.++++..
T Consensus 90 --~~~~d~vlv~~gD~p~~~~~~l~~l~~ 116 (430)
T PRK14359 90 --EPKHERVLILNGDMPLVEKDELEKLLE 116 (430)
T ss_pred --ccCCCeEEEEECCccCCCHHHHHHHHh
Confidence 23468999999999 567888877653
No 211
>PF14979 TMEM52: Transmembrane 52
Probab=20.86 E-value=3.1e+02 Score=25.73 Aligned_cols=30 Identities=7% Similarity=0.239 Sum_probs=21.5
Q ss_pred CeEEEEeecCCchHHHHHHHHHHHcCCCCC
Q 005700 221 PMVLVQIPMCNEKEVYQQSIAAVCNLDWPK 250 (682)
Q Consensus 221 P~VsVvIP~yNE~~~l~~tL~Sl~~qdYP~ 250 (682)
+.-.+-+-..+.+..+..|+.|...-.||.
T Consensus 62 ~P~~~TVia~D~DSt~hsTvTS~sSVq~P~ 91 (154)
T PF14979_consen 62 QPYEVTVIAVDSDSTLHSTVTSYSSVQYPA 91 (154)
T ss_pred CCceEEEEeccCCccccchhhhhhcccccc
Confidence 334444445677778999999998888886
No 212
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=20.85 E-value=7.2e+02 Score=23.50 Aligned_cols=43 Identities=2% Similarity=-0.017 Sum_probs=31.1
Q ss_pred chhhHHHHHhhcccCCccEEEEEcCCC-CCCHHHHHHHHHHhhc
Q 005700 296 KAGNLKSAMNCSYVKDYEFVAIFDADF-QPNPDFLRRTVPHFKD 338 (682)
Q Consensus 296 KagaLn~gl~~~~~a~~d~Vl~lDaD~-~~~pd~L~~lv~~~~~ 338 (682)
-..++..|++.....+.|+++++=+|+ .++++.+++++.....
T Consensus 59 pl~~~~~gl~~~~~~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~ 102 (178)
T PRK00576 59 PLPATGRGLRAAAEAGARLAFVCAVDMPYLTVELIDDLARPAAQ 102 (178)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 444555556532123579999999999 6799999999887654
No 213
>PHA01631 hypothetical protein
Probab=20.27 E-value=85 Score=30.03 Aligned_cols=67 Identities=18% Similarity=0.142 Sum_probs=35.3
Q ss_pred eEEEEEcCCCChhHHHHHHHHHHHHhhcCCeEEEEecc--CCCCcchhhHHHHHhhcccCCccEEEEEcCCCCCCH
Q 005700 253 ILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRI--LRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPNP 326 (682)
Q Consensus 253 l~ViVvDD~sdd~t~~~l~~~~~~~~~~~v~v~~~~r~--~~~g~KagaLn~gl~~~~~a~~d~Vl~lDaD~~~~p 326 (682)
+..++|||.-.+-+.-.++ ....+++..... .|+=.-|..+-..++....-+.|+++++|+|..+++
T Consensus 18 ~D~V~VD~~~~~~~~c~~~-------~~~~~Ii~~~t~~e~Rr~RIAk~Ll~Iln~~s~i~DDi~~iIDSDV~ipn 86 (176)
T PHA01631 18 FDYVVVDKTFNDMTECQIP-------KYQEKIIWIMTNTEIRWLRIAKQLLTIVNFAKNIEDDIIAIIDSDLIIPN 86 (176)
T ss_pred ccEEEEccccccccccccc-------ccCCceEEecccchhHHHHHHHHHHHHHHhhccCCccEEEEeccceEecC
Confidence 4467788866554432111 234455543211 111123344444443222467889999999997766
No 214
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=20.24 E-value=3e+02 Score=29.86 Aligned_cols=106 Identities=16% Similarity=0.195 Sum_probs=55.0
Q ss_pred EeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHh----hcCCeEE--EEeccCC--CCcch
Q 005700 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQ----EAGANIV--YRHRILR--DGYKA 297 (682)
Q Consensus 226 vIP~yNE~~~l~~tL~Sl~~qdYP~~~l~ViVvDD~sdd~t~~~l~~~~~~~~----~~~v~v~--~~~r~~~--~g~Ka 297 (682)
++|.-+....|..+|+.+.+.... + |+|+-+...+...+.+.+. .+|. ..++++. +.....+ ..+-+
T Consensus 28 llpv~gk~pli~~~l~~l~~~Gi~--~--i~iv~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~Gta 102 (380)
T PRK05293 28 AVPFGGKYRIIDFTLSNCANSGID--T--VGVLTQYQPLELNNHIGIG-SPWDLDRINGGVTILPPYSESEGGKWYKGTA 102 (380)
T ss_pred eeeeCCceeehhHHHHHHHhCCCC--E--EEEEecCCHHHHHHHHhCC-CcccccCCCCCEEEeCCcccCCCCcccCCcH
Confidence 466666545788888888876533 4 4444444334333333210 1111 0112332 2222221 12367
Q ss_pred hhHHHHHhhcccCCccEEEEEcCCCCCCHHHHHHHHHHhh
Q 005700 298 GNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFK 337 (682)
Q Consensus 298 gaLn~gl~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~~~ 337 (682)
+++..+.+.....+.|.++++.+|+..+.+ +.+++....
T Consensus 103 ~al~~a~~~l~~~~~~~~lV~~gD~l~~~d-~~~ll~~h~ 141 (380)
T PRK05293 103 HAIYQNIDYIDQYDPEYVLILSGDHIYKMD-YDKMLDYHK 141 (380)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCCEEEcCC-HHHHHHHHH
Confidence 888777765312234789999999977665 445555443
Done!