BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005702
(682 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9EPL8|IPO7_MOUSE Importin-7 OS=Mus musculus GN=Ipo7 PE=1 SV=2
Length = 1038
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/312 (23%), Positives = 126/312 (40%), Gaps = 62/312 (19%)
Query: 68 FLQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEY 127
++ R++ + I+ + W+ + PH ++ IFP + + D W+ED EY
Sbjct: 316 YMAPRVLQQTLNYINQGVSHALTWKNLKPHIQGIIQDVIFPLMCYTDADEELWQEDPYEY 375
Query: 128 IRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKS 187
IR F ED + +A LL + SKRK+
Sbjct: 376 IRMKFDV--------FEDFISPTTAAQTLL-----------------FTACSKRKE---- 406
Query: 188 KRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQK--SE 245
++ TMG + I + NA + KD G L G L E L ++K +
Sbjct: 407 ---VLQKTMGFC--------YQILTEPNADPRK--KD--GALHMIGSLAEILLKKKIYKD 451
Query: 246 FTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKG 305
++++ V PL+S L Y+ A A W+L ++ +L AL++ +
Sbjct: 452 QMEYMLQNHVFPLFSSE--LGYMRARACWVLHYFC-----EVKFKSDQNLQTALELTRRC 504
Query: 306 --DTSCYPVRASAAGAIVGLLEN-----DYMPPEWYPLLQVIVGRIGYEDEENSILFELL 358
D PV+ AA A+ L+ N +Y+ P P++Q ++ I + EN L ++
Sbjct: 505 LIDDREMPVKVEAAIALQVLISNQEKAKEYITPFIRPVMQALLHII--RETENDDLTNVI 562
Query: 359 SSVVGAANENVA 370
++ +E V
Sbjct: 563 QKMICEYSEEVT 574
>sp|O95373|IPO7_HUMAN Importin-7 OS=Homo sapiens GN=IPO7 PE=1 SV=1
Length = 1038
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 76/344 (22%), Positives = 140/344 (40%), Gaps = 73/344 (21%)
Query: 68 FLQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEY 127
++ R++ + I+ + W+ + PH ++ IFP + + D W+ED EY
Sbjct: 316 YMAPRVLQQTLNYINQGVSHALTWKNLKPHIQGIIQDVIFPLMCYTDADEELWQEDPYEY 375
Query: 128 IRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKS 187
IR F ED + +A LL + SKRK+
Sbjct: 376 IRMKFDV--------FEDFISPTTAAQTLL-----------------FTACSKRKE---- 406
Query: 188 KRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQK--SE 245
++ TMG + I + NA + KD G L G L E L ++K +
Sbjct: 407 ---VLQKTMGFC--------YQILTEPNADPRK--KD--GALHMIGSLAEILLKKKIYKD 451
Query: 246 FTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKG 305
++++ V PL+S L Y+ A A W+L ++ +L AL++ +
Sbjct: 452 QMEYMLQNHVFPLFSSE--LGYMRARACWVLHYFC-----EVKFKSDQNLQTALELTRRC 504
Query: 306 --DTSCYPVRASAAGAIVGLLEN-----DYMPPEWYPLLQVIVGRIGYEDEENSILFELL 358
D PV+ AA A+ L+ N +Y+ P P++Q ++ I + EN L ++
Sbjct: 505 LIDDREMPVKVEAAIALQVLISNQEKAKEYITPFIRPVMQALLHII--RETENDDLTNVI 562
Query: 359 SSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERG 402
++ +E V+ + +++H+ + + QV++ G
Sbjct: 563 QKMICEYSEE--------VTPIAVEMTQHL---AMTFNQVIQTG 595
>sp|O15397|IPO8_HUMAN Importin-8 OS=Homo sapiens GN=IPO8 PE=1 SV=2
Length = 1037
Score = 52.8 bits (125), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 73/353 (20%), Positives = 141/353 (39%), Gaps = 66/353 (18%)
Query: 67 DFLQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADE 126
+++ R++ AF+ ++ + W+ + PH + + IF + ++D W+ED E
Sbjct: 316 EYVAPRVLQQAFNYLNQGVVHSITWKQMKPHIQNISEDVIFSVMCYKDEDEELWQEDPYE 375
Query: 127 YIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEK 186
YIR F D+F S P + + + KRK+
Sbjct: 376 YIRMKF------------DIFEDYAS-------------PTTAAQTLLYTAAKKRKE--- 407
Query: 187 SKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEF 246
VLP + F + + +KD G L G L E L +KS F
Sbjct: 408 --------------VLPKMMAFCYQILTDPNFDPRKKD--GALHVIGSLAEILL-KKSLF 450
Query: 247 TANL---VRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLD 303
+ +++ V PL + L YL A + W+L +S + +L A+++
Sbjct: 451 KDQMELFLQNHVFPLLLSN--LGYLRARSCWVLHAFSS-----LKFHNELNLRNAVELAK 503
Query: 304 KG--DTSCYPVRASAAGAIVGLLEN-----DYMPPEWYPLLQVIVGRIGYEDEENSILFE 356
K + PV+ AA A+ L+ N +YM P P++Q ++ + + EN +
Sbjct: 504 KSLIEDKEMPVKVEAALALQSLISNQIQAKEYMKPHVRPIMQELLHIV--RETENDDVTN 561
Query: 357 LLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALM 409
++ ++ ++ VA + L K + S+ + +V ++ A+ ++
Sbjct: 562 VIQKMICEYSQEVASIAVDMTQHLAEIFGKVLQ--SDEYEEVEDKTVMAMGIL 612
>sp|Q7TMY7|IPO8_MOUSE Importin-8 OS=Mus musculus GN=Ipo8 PE=2 SV=3
Length = 1010
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 66/314 (21%), Positives = 126/314 (40%), Gaps = 64/314 (20%)
Query: 67 DFLQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADE 126
+++ R++ AF+ ++ + W+ + PH + + IF + ++D W+ED E
Sbjct: 316 EYIAPRVLQQAFNYLNQGVVHAVTWKQMKPHIQNISEDVIFSVMCYKDEDEELWQEDPYE 375
Query: 127 YIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEK 186
YIR F D+F S P + + + KRK+
Sbjct: 376 YIRMKF------------DIFEDYAS-------------PTTAAQTLLYTAAKKRKE--- 407
Query: 187 SKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEF 246
VLP + F + + +KD G L G L E L +KS F
Sbjct: 408 --------------VLPKMMAFCYQILTDPNFDPRKKD--GALHVIGSLAEILL-KKSLF 450
Query: 247 TANL---VRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLD 303
+ +++ V PL + L YL A + W+L +S + +L A+++
Sbjct: 451 KDQIELFLQNHVFPLLMSN--LGYLRARSCWVLHAFSS-----LKFHNELNLRNAVELAK 503
Query: 304 KG--DTSCYPVRASAAGAIVGLLEN-----DYMPPEWYPLLQVIVGRIGYEDEENSILFE 356
K + PV+ AA A+ L+ N ++M P ++Q ++ + + EN +
Sbjct: 504 KSLIEDEEMPVKVEAALALQSLISNQAQAKEHMKPYVRFIMQELLHIV--RETENDDVTN 561
Query: 357 LLSSVVGAANENVA 370
++ ++ +++VA
Sbjct: 562 VIQKLICEYSQDVA 575
>sp|Q55CX9|IPO7_DICDI Probable importin-7 homolog OS=Dictyostelium discoideum
GN=DDB_G0269860 PE=3 SV=1
Length = 1065
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 83/368 (22%), Positives = 147/368 (39%), Gaps = 75/368 (20%)
Query: 71 ERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRK 130
ER + S ++ G + + P S L+ + +FP + N++D WE D +E++R
Sbjct: 322 ERYQQKLIEYFSFAIKYGVTYVAMKPWLSTLIQQVLFPIICFNDRDAELWECDPNEFLRS 381
Query: 131 NFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRN 190
F S + TAR +N + + +G R
Sbjct: 382 QFESSMT--------FATARIEVLNFIIDVVGKRG-----------------------RA 410
Query: 191 SMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANL 250
++ MG + L+++ +A+ + R +KD GVL+ L +L+ S + +NL
Sbjct: 411 NLDMIMG--FCIQSLNKYNAATNASEKNPR-EKD--GVLVIISVLSAYLK-NISFYKSNL 464
Query: 251 VRSRVLPLY-SVSVCLPYLVASANWILGELASCLPEDISADVYSSLLK-ALQMLDKGDTS 308
+ +L ++ +S +L A A + E + E +S+ LK L ++ D
Sbjct: 465 EQMLLLHVFPELSSPHGFLKARACSLFSEFYNI--EFTDPVYFSNALKLILGLMSDNDL- 521
Query: 309 CYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANEN 368
PVR A +I L+ + E P+L ++ +I F LLS A +E+
Sbjct: 522 --PVRVKAGTSICNLVRANQGVDELRPILPQLLDKI----------FSLLSE---AESED 566
Query: 369 VADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSG 428
+ I I+ I+ + A+ L E FLR +EL++S
Sbjct: 567 LVIAIESIIQRFKHEIAPY-----------------AVNLCKNLSEQFLR-LLELEESDE 608
Query: 429 KWESGQAA 436
ESG A+
Sbjct: 609 SGESGFAS 616
>sp|Q04175|SXM1_YEAST Importin beta SMX1 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=SXM1 PE=1 SV=1
Length = 944
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 117/285 (41%), Gaps = 50/285 (17%)
Query: 91 WRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTAR 150
+ L+ PH ++ + IFP L NE+ I E+D +EY R+ F
Sbjct: 333 YPLIEPHLQIIFENVIFPCLCANEQSIELLEDDQEEYTRRYFD----------------- 375
Query: 151 KSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPI 210
IN G P + + SKR + K N+ +LPF++
Sbjct: 376 ---INREG-----STPDAASADFIFLIGSKRPE----KLNN---------ILPFINDIFT 414
Query: 211 PCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVA 270
DAN+S + G L L F+ E N+ ++PL S + +LVA
Sbjct: 415 RFDANSSDINMAFKEEGALRTLSNLFSFIDE--PSVLENIFGHFIVPLLSQDKYM-FLVA 471
Query: 271 SANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMP 330
+ L +A E ++ S L + L + +++ PV+ AA AI L+ ++
Sbjct: 472 RS---LETIALYSEEFKDMNILSQLFE-LTYTNFLNSNVLPVQIEAADAIKCLIVSN--- 524
Query: 331 PEWYPLLQVIVGRIGYEDEENSILFE--LLSSVVGAANENVADHI 373
P+ +P + V + + + S +FE +LS V+ A E +D +
Sbjct: 525 PQIHPAVSAHVPGMMEKLLKLSKIFEIDILSEVMEALVERFSDEL 569
>sp|P46970|NMD5_YEAST Nonsense-mediated mRNA decay protein 5 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NMD5 PE=1 SV=2
Length = 1048
Score = 40.8 bits (94), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 91 WRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKN 131
W+LV PH++V+L IFP L + + ++ D EYI +N
Sbjct: 354 WKLVGPHYNVILQHVIFPLLKPTAETLEAFDNDPQEYINRN 394
>sp|A2C249|UVRC_PROM1 UvrABC system protein C OS=Prochlorococcus marinus (strain NATL1A)
GN=uvrC PE=3 SV=1
Length = 640
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Query: 251 VRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDT 307
+R R +PLY CL N+ +G E+IS++ Y + LK ++M+ +G T
Sbjct: 161 LRQRRIPLYKDRTCL-------NYSIGRCPGVCQEEISSEDYKNTLKRVEMIFQGRT 210
>sp|Q46L08|UVRC_PROMT UvrABC system protein C OS=Prochlorococcus marinus (strain NATL2A)
GN=uvrC PE=3 SV=1
Length = 640
Score = 35.0 bits (79), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Query: 251 VRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDT 307
+R R +PLY CL N+ +G E+IS++ Y + LK ++M+ +G T
Sbjct: 161 LRQRRIPLYKDRTCL-------NYSIGRCPGVCQEEISSEDYKNTLKRVEMIFQGRT 210
>sp|Q03016|GIP3_YEAST GLC7-interacting protein 3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=GIP3 PE=1 SV=1
Length = 1276
Score = 33.9 bits (76), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 152 SAINLLGVISVSKG--PPMGTPSNCSSVSSKRKKGEKSKR 189
SAIN SV KG PP+ +PSN + S GEK+KR
Sbjct: 158 SAINATASSSVGKGKHPPISSPSNATLKRSNSTSGEKTKR 197
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 246,805,392
Number of Sequences: 539616
Number of extensions: 10039160
Number of successful extensions: 38135
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 38101
Number of HSP's gapped (non-prelim): 34
length of query: 682
length of database: 191,569,459
effective HSP length: 124
effective length of query: 558
effective length of database: 124,657,075
effective search space: 69558647850
effective search space used: 69558647850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)