BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005703
(682 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8WXA9|SREK1_HUMAN Splicing regulatory glutamine/lysine-rich protein 1 OS=Homo sapiens
GN=SREK1 PE=1 SV=1
Length = 508
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 8/152 (5%)
Query: 17 PMAPSAAAMAAAQAIVAAQALQAHAAQVQAQQSAKDLSGSPDKAGKADALKKTLQVSNL- 75
P+ ++++ AI AA AL + A + + L G+ D + K D +++T+ V NL
Sbjct: 18 PLTTLGVSLSSLGAIPAA-ALDPNIATL-GEIPQPPLMGNVDPS-KIDEIRRTVYVGNLN 74
Query: 76 SPLLTVEQLRQLFSFCGTVVECTI----TDSKHFAYIEYSKPEEATAALALNNMDVGGRP 131
S T +QL + F G V + T FA++E++ ALA N + G RP
Sbjct: 75 SQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRP 134
Query: 132 LNVEMAKSFPQKPSHLNSSLAGSSLPMMMQQA 163
L + + + KP + A L +M++
Sbjct: 135 LKINHSNNAIVKPPEMTPQAAAKELEEVMKRV 166
>sp|Q9JKL7|SREK1_RAT Splicing regulatory glutamine/lysine-rich protein 1 OS=Rattus
norvegicus GN=Srek1 PE=1 SV=1
Length = 494
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Query: 53 LSGSPDKAGKADALKKTLQVSNL-SPLLTVEQLRQLFSFCGTVVECTI----TDSKHFAY 107
L G+ D + K D +++T+ V NL S T +QL + F G V + T FA+
Sbjct: 55 LMGNVDPS-KIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAF 113
Query: 108 IEYSKPEEATAALALNNMDVGGRPLNVEMAKSFPQKPSHLNSSLAGSSLPMMMQ 161
+E++ ALA N + G RPL + + + KP + A L +M+
Sbjct: 114 VEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAAKELEEVMK 167
>sp|Q05519|SRS11_HUMAN Serine/arginine-rich splicing factor 11 OS=Homo sapiens GN=SRSF11
PE=1 SV=1
Length = 484
Score = 39.3 bits (90), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 68 KTLQVSNLSPLLTVEQLRQLFSFCGTVVEC--------TITDSKHFAYIEYSKPEEATAA 119
+ +QV+N+SP + EQ+R LF F G + E + S ++++ P+ A A
Sbjct: 33 EVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFPPDDSPLPVSSRVCFVKFHDPDSAVVA 92
Query: 120 LALNNMDVGGRPLNV 134
L N R L V
Sbjct: 93 QHLTNTVFVDRALIV 107
>sp|Q8L716|U2A2B_ARATH Splicing factor U2af large subunit B OS=Arabidopsis thaliana
GN=U2AF65B PE=2 SV=2
Length = 589
Score = 36.6 bits (83), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 94 VVECTITDSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEMAKSFPQKPSHLNSSLAG 153
VV I K FA++E EEA+ A+AL+ + + G P+ V ++P+ N SLA
Sbjct: 293 VVNVYINHEKKFAFVEMRSVEEASNAMALDGIILEGVPVKV-------RRPTDYNPSLAA 345
Query: 154 SSLP 157
+ P
Sbjct: 346 TLGP 349
>sp|O13845|RSD1_SCHPO RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rsd1 PE=1 SV=2
Length = 603
Score = 36.6 bits (83), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 67 KKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITD------SKHFAYIEYSKPEEATAAL 120
++T+ VS L+ LT +L F G V + I SK AY+E+ + AA+
Sbjct: 239 RRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAI 298
Query: 121 ALNNMDVGGRPLNVEMAKS 139
AL+ + G P+ V++ ++
Sbjct: 299 ALSGKRLLGLPVIVQLTEA 317
Score = 35.4 bits (80), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 70 LQVSNLSPLLTVEQLRQLFSFCGTV--VECTITD---SKHFAYIEYSKPEEATAALA-LN 123
L VSN+ LT E ++ +F G + V D SK F YI+Y P A AL +N
Sbjct: 342 LCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMN 401
Query: 124 NMDVGGRPLNVEMA 137
D+ GR + V +
Sbjct: 402 GFDLAGRNMRVCLG 415
>sp|Q2QKB3|U2A2A_WHEAT Splicing factor U2af large subunit A OS=Triticum aestivum
GN=U2AF65A PE=2 SV=1
Length = 591
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 88 FSFCGTVVECTITDSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEMAKSFPQKPSHL 147
F+ VV I K FA++E EEA+ A+AL+ + G P+ V ++P+
Sbjct: 304 FALGHAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIMFEGAPVKV-------RRPTDY 356
Query: 148 NSSLAGSSLP 157
N S A + P
Sbjct: 357 NPSQAAALGP 366
>sp|P49756|RBM25_HUMAN RNA-binding protein 25 OS=Homo sapiens GN=RBM25 PE=1 SV=3
Length = 843
Score = 33.5 bits (75), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 69 TLQVSNLSPLLTVEQLRQLFSFCGTV-----VECTITDSKHFAYIEYSKPEEATAAL-AL 122
T+ V N+S + +RQL + CG V V+ + F + EY +PE AL L
Sbjct: 88 TVFVGNISEKASDMLIRQLLAKCGLVLSWKRVQGASGKLQAFGFCEYKEPESTLRALRLL 147
Query: 123 NNMDVGGRPLNVEM 136
+++ +G + L V++
Sbjct: 148 HDLQIGEKKLLVKV 161
>sp|Q8BZX4|SREK1_MOUSE Splicing regulatory glutamine/lysine-rich protein 1 OS=Mus musculus
GN=Srek1 PE=2 SV=1
Length = 494
Score = 33.1 bits (74), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 82/197 (41%), Gaps = 15/197 (7%)
Query: 53 LSGSPDKAGKADALKKTLQVSNL-SPLLTVEQLRQLFSFCGTVVECTI----TDSKHFAY 107
L G+ D + K D +++T+ V NL S T +QL + F G V + T FA+
Sbjct: 55 LMGNVDPS-KIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAF 113
Query: 108 IEYSKPEEATAALALNNMDVGGRPLNVEMAKSFPQKPSHLNSSLAGSSLPMMMQQAVAMQ 167
+E++ ALA N + G RPL + + + KP + A L +M++ Q
Sbjct: 114 VEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAAKELEEVMKRVREAQ 173
Query: 168 QMQFQQALLMQQTLTAQQAANRAASMKSATELAAARAAEISKKLKADGLVDEDKETKQKS 227
F A + + + ++ K + R+ S + + +S
Sbjct: 174 S--FISAAI-------EPESGKSNERKGGRSRSHTRSKSRSSSKSHSRRKRSQSKHRSRS 224
Query: 228 RSPSTSRARSRSKSRSP 244
+ S SR + R +S+SP
Sbjct: 225 HNRSRSRQKDRRRSKSP 241
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.121 0.330
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 227,515,574
Number of Sequences: 539616
Number of extensions: 9240835
Number of successful extensions: 78478
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 1919
Number of HSP's that attempted gapping in prelim test: 39428
Number of HSP's gapped (non-prelim): 15025
length of query: 682
length of database: 191,569,459
effective HSP length: 124
effective length of query: 558
effective length of database: 124,657,075
effective search space: 69558647850
effective search space used: 69558647850
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)