Query 005703
Match_columns 682
No_of_seqs 506 out of 2885
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 05:04:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005703.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005703hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pgw_S U1-70K; protein-RNA com 99.8 2E-19 7E-24 199.2 25.7 80 63-142 98-184 (437)
2 4fxv_A ELAV-like protein 1; RN 99.7 1E-17 3.4E-22 148.1 10.0 75 65-139 17-98 (99)
3 1sjq_A Polypyrimidine tract-bi 99.7 2.7E-17 9.4E-22 147.1 9.6 81 64-144 13-96 (105)
4 4f25_A Polyadenylate-binding p 99.7 5.7E-17 2E-21 146.8 10.0 76 67-142 5-85 (115)
5 2cq1_A PTB-like protein L; RRM 99.7 2.1E-16 7.3E-21 140.4 13.4 82 63-144 11-95 (101)
6 3r27_A HnRNP L, heterogeneous 99.7 8.6E-17 2.9E-21 142.6 10.7 77 64-140 18-97 (100)
7 2cq3_A RNA-binding protein 9; 99.7 3.5E-16 1.2E-20 138.1 14.3 83 62-144 10-97 (103)
8 2cqi_A Nucleolysin TIAR; RNA r 99.7 3.1E-16 1E-20 138.5 13.5 82 62-143 10-96 (103)
9 1x4a_A Splicing factor, argini 99.7 3.5E-16 1.2E-20 139.7 13.8 82 62-143 17-102 (109)
10 3s8s_A Histone-lysine N-methyl 99.7 1.1E-16 3.9E-21 144.1 10.4 75 65-139 4-85 (110)
11 2ad9_A Polypyrimidine tract-bi 99.7 1.3E-16 4.4E-21 146.0 10.8 82 64-145 28-112 (119)
12 2dgo_A Cytotoxic granule-assoc 99.7 2.7E-16 9.3E-21 141.7 12.8 84 61-144 9-99 (115)
13 2wbr_A GW182, gawky, LD47780P; 99.7 7.9E-17 2.7E-21 138.9 8.7 73 66-138 6-79 (89)
14 1x4d_A Matrin 3; structural ge 99.7 9.3E-17 3.2E-21 143.1 9.4 77 64-140 12-92 (102)
15 2ytc_A PRE-mRNA-splicing facto 99.7 1.3E-16 4.6E-21 135.6 9.9 76 63-138 8-85 (85)
16 1why_A Hypothetical protein ri 99.7 2.2E-16 7.4E-21 138.1 11.4 79 63-141 13-94 (97)
17 2dnq_A RNA-binding protein 4B; 99.7 3.5E-16 1.2E-20 134.9 12.2 79 64-144 5-84 (90)
18 1wex_A Hypothetical protein (r 99.7 2.3E-16 7.9E-21 140.9 11.4 81 64-144 12-95 (104)
19 2dgs_A DAZ-associated protein 99.7 4.4E-16 1.5E-20 136.5 12.9 81 64-144 7-93 (99)
20 2dgt_A RNA-binding protein 30; 99.7 3.3E-16 1.1E-20 135.6 11.8 80 63-144 6-86 (92)
21 2dnm_A SRP46 splicing factor; 99.7 2.8E-16 9.6E-21 138.8 11.5 81 63-143 9-96 (103)
22 1whw_A Hypothetical protein ri 99.7 3.8E-16 1.3E-20 136.8 12.3 80 64-143 5-91 (99)
23 1x4g_A Nucleolysin TIAR; struc 99.7 3E-16 1E-20 140.3 11.7 79 65-143 23-102 (109)
24 2d9p_A Polyadenylate-binding p 99.7 2.8E-16 9.6E-21 138.8 11.4 83 62-144 10-97 (103)
25 2cpz_A CUG triplet repeat RNA- 99.7 2.5E-16 8.5E-21 142.0 11.2 83 62-144 20-109 (115)
26 2jvo_A Nucleolar protein 3; nu 99.7 1.7E-16 5.7E-21 142.4 10.0 79 62-142 26-105 (108)
27 2cpj_A Non-POU domain-containi 99.7 3.5E-16 1.2E-20 137.2 11.8 80 63-142 11-91 (99)
28 2cph_A RNA binding motif prote 99.7 5.2E-16 1.8E-20 137.7 13.0 82 62-143 10-100 (107)
29 2dnh_A Bruno-like 5, RNA bindi 99.7 3.8E-16 1.3E-20 138.2 12.0 82 62-143 10-100 (105)
30 2e5h_A Zinc finger CCHC-type a 99.7 3.9E-16 1.3E-20 135.3 11.8 77 62-138 11-94 (94)
31 1x5u_A Splicing factor 3B subu 99.7 4.6E-16 1.6E-20 137.8 12.5 82 62-143 10-98 (105)
32 2dnz_A Probable RNA-binding pr 99.7 5.5E-16 1.9E-20 134.6 12.6 78 66-143 4-88 (95)
33 1x4c_A Splicing factor, argini 99.7 6.2E-16 2.1E-20 138.2 13.2 79 65-144 13-97 (108)
34 2dgu_A Heterogeneous nuclear r 99.7 4.5E-16 1.5E-20 137.7 12.1 78 65-144 9-87 (103)
35 2dnp_A RNA-binding protein 14; 99.7 3.5E-16 1.2E-20 134.9 11.1 78 64-143 6-84 (90)
36 3mdf_A Peptidyl-prolyl CIS-tra 99.7 2.7E-16 9.3E-21 133.5 10.3 75 64-138 4-85 (85)
37 2cpf_A RNA binding motif prote 99.7 3.1E-16 1.1E-20 137.1 10.9 79 65-143 3-91 (98)
38 2cq0_A Eukaryotic translation 99.7 2.7E-16 9.1E-21 138.9 10.5 82 62-143 10-98 (103)
39 2la4_A Nuclear and cytoplasmic 99.7 1.5E-16 5.3E-21 139.9 8.8 74 66-139 26-100 (101)
40 3beg_B Splicing factor, argini 99.7 2.1E-16 7E-21 143.2 9.6 69 66-135 15-84 (115)
41 2cqb_A Peptidyl-prolyl CIS-tra 99.7 3E-16 1E-20 138.2 10.3 82 63-144 8-96 (102)
42 1whx_A Hypothetical protein ri 99.7 3.3E-16 1.1E-20 141.1 10.7 76 66-141 9-85 (111)
43 2cpd_A Apobec-1 stimulating pr 99.7 1E-15 3.6E-20 134.2 13.6 79 62-142 10-91 (99)
44 3bs9_A Nucleolysin TIA-1 isofo 99.7 2.4E-16 8.3E-21 134.4 9.3 75 66-140 5-86 (87)
45 1x4f_A Matrin 3; structural ge 99.7 3.5E-16 1.2E-20 141.6 10.5 79 63-141 21-103 (112)
46 2do4_A Squamous cell carcinoma 99.7 7.4E-16 2.5E-20 135.3 12.3 80 63-142 13-98 (100)
47 2xnq_A Nuclear polyadenylated 99.7 5.1E-16 1.8E-20 136.3 11.3 76 63-140 18-95 (97)
48 2jvr_A Nucleolar protein 3; RN 99.7 2.1E-16 7E-21 142.9 8.9 75 66-140 27-105 (111)
49 2dgx_A KIAA0430 protein; RRM d 99.6 4.5E-16 1.5E-20 136.2 10.7 77 66-142 8-92 (96)
50 4a8x_A RNA-binding protein wit 99.6 5.1E-16 1.7E-20 132.6 10.8 75 66-140 3-85 (88)
51 1x5t_A Splicing factor 3B subu 99.6 4.1E-16 1.4E-20 135.7 10.4 79 66-144 4-90 (96)
52 1x5s_A Cold-inducible RNA-bind 99.6 5.2E-16 1.8E-20 136.6 11.0 80 64-143 9-95 (102)
53 3md1_A Nuclear and cytoplasmic 99.6 4.5E-16 1.5E-20 131.6 10.1 73 68-140 2-81 (83)
54 1x4h_A RNA-binding protein 28; 99.6 1E-15 3.5E-20 136.7 12.9 81 63-143 11-104 (111)
55 1s79_A Lupus LA protein; RRM, 99.6 2.9E-16 1E-20 139.9 9.2 77 63-139 7-88 (103)
56 2lxi_A RNA-binding protein 10; 99.6 1.3E-16 4.4E-21 138.7 6.7 76 67-142 1-85 (91)
57 2do0_A HnRNP M, heterogeneous 99.6 1.1E-15 3.6E-20 137.4 12.8 80 63-142 11-96 (114)
58 2x1f_A MRNA 3'-END-processing 99.6 6E-16 2E-20 135.0 10.9 75 67-141 2-83 (96)
59 2err_A Ataxin-2-binding protei 99.6 3.8E-16 1.3E-20 140.0 9.8 79 62-140 24-107 (109)
60 2cqc_A Arginine/serine-rich sp 99.6 5.3E-16 1.8E-20 134.6 10.2 77 63-139 11-94 (95)
61 1p27_B RNA-binding protein 8A; 99.6 4.5E-16 1.5E-20 138.0 9.9 78 64-141 20-104 (106)
62 2khc_A Testis-specific RNP-typ 99.6 4.9E-16 1.7E-20 140.6 10.3 77 62-138 35-118 (118)
63 2fy1_A RNA-binding motif prote 99.6 9E-16 3.1E-20 139.3 12.0 79 64-142 4-88 (116)
64 2e5j_A Methenyltetrahydrofolat 99.6 5.4E-16 1.8E-20 135.7 10.0 78 63-141 15-95 (97)
65 1oo0_B CG8781-PA, drosophila Y 99.6 6.5E-16 2.2E-20 138.0 10.8 79 64-142 23-108 (110)
66 2dgp_A Bruno-like 4, RNA bindi 99.6 7.7E-16 2.6E-20 136.5 11.1 82 62-143 8-99 (106)
67 3s7r_A Heterogeneous nuclear r 99.6 5.7E-16 2E-20 132.4 9.8 75 63-137 7-87 (87)
68 2dgv_A HnRNP M, heterogeneous 99.6 5.1E-16 1.8E-20 134.0 9.6 78 65-142 6-88 (92)
69 1x5p_A Negative elongation fac 99.6 2.3E-15 7.8E-20 131.7 13.7 79 63-143 11-90 (97)
70 2jrs_A RNA-binding protein 39; 99.6 7E-16 2.4E-20 138.3 10.6 81 60-140 19-106 (108)
71 2cqd_A RNA-binding region cont 99.6 2.1E-15 7.3E-20 136.1 13.7 80 61-141 11-97 (116)
72 2cpe_A RNA-binding protein EWS 99.6 8.8E-16 3E-20 137.8 11.1 82 62-143 10-106 (113)
73 2ywk_A Putative RNA-binding pr 99.6 4.6E-16 1.6E-20 135.1 8.7 77 63-139 12-94 (95)
74 2cqh_A IGF-II mRNA-binding pro 99.6 4E-16 1.4E-20 135.2 8.3 79 65-144 6-87 (93)
75 2kvi_A Nuclear polyadenylated 99.6 5.8E-16 2E-20 135.4 9.3 77 64-142 7-85 (96)
76 3ex7_B RNA-binding protein 8A; 99.6 8.9E-16 3E-20 140.5 10.9 80 64-143 19-105 (126)
77 2dis_A Unnamed protein product 99.6 1.1E-15 3.9E-20 136.1 11.2 79 65-143 6-95 (109)
78 3ns6_A Eukaryotic translation 99.6 2.7E-16 9.4E-21 138.8 7.0 75 65-139 4-92 (100)
79 2lkz_A RNA-binding protein 5; 99.6 3.2E-16 1.1E-20 137.7 7.3 76 64-139 6-94 (95)
80 2dng_A Eukaryotic translation 99.6 1.6E-15 5.4E-20 134.1 11.9 80 63-143 11-96 (103)
81 1u6f_A Tcubp1, RNA-binding pro 99.6 1.8E-15 6.3E-20 140.8 12.6 85 61-145 36-127 (139)
82 2a3j_A U1 small nuclear ribonu 99.6 1.1E-15 3.8E-20 141.4 10.9 76 65-140 27-110 (127)
83 1nu4_A U1A RNA binding domain; 99.6 1E-15 3.6E-20 133.3 10.0 78 64-141 5-90 (97)
84 2cq4_A RNA binding motif prote 99.6 4.9E-16 1.7E-20 139.9 8.1 77 64-140 22-104 (114)
85 3ulh_A THO complex subunit 4; 99.6 1E-15 3.5E-20 135.9 10.0 74 65-138 27-106 (107)
86 3ucg_A Polyadenylate-binding p 99.6 1.3E-15 4.3E-20 130.5 10.2 74 67-140 6-85 (89)
87 2cpi_A CCR4-NOT transcription 99.6 5.6E-16 1.9E-20 139.3 8.2 79 63-141 11-102 (111)
88 3p5t_L Cleavage and polyadenyl 99.6 1.9E-16 6.5E-21 136.8 4.8 75 68-142 2-85 (90)
89 1h2v_Z 20 kDa nuclear CAP bind 99.6 1.4E-15 4.8E-20 144.6 11.3 80 63-142 35-121 (156)
90 1wi8_A EIF-4B, eukaryotic tran 99.6 1.7E-15 5.8E-20 134.1 11.1 79 64-143 12-97 (104)
91 2kxn_B Transformer-2 protein h 99.6 1E-15 3.5E-20 141.7 10.0 79 63-141 42-127 (129)
92 2rs2_A Musashi-1, RNA-binding 99.6 1.7E-15 5.9E-20 135.8 11.1 81 63-143 21-107 (109)
93 2la6_A RNA-binding protein FUS 99.6 1.4E-15 4.9E-20 133.4 10.3 75 64-138 10-99 (99)
94 3lqv_A PRE-mRNA branch site pr 99.6 1.6E-15 5.6E-20 136.5 10.8 77 65-141 6-86 (115)
95 2nlw_A Eukaryotic translation 99.6 1.6E-15 5.4E-20 134.9 10.2 78 63-140 11-100 (105)
96 1wf1_A RNA-binding protein RAL 99.6 1.8E-15 6E-20 135.5 10.4 74 65-140 25-100 (110)
97 2dhg_A TRNA selenocysteine ass 99.6 1.5E-15 5E-20 134.2 9.6 80 64-143 6-93 (104)
98 2div_A TRNA selenocysteine ass 99.6 1.6E-15 5.4E-20 132.8 9.4 78 64-141 6-95 (99)
99 2hvz_A Splicing factor, argini 99.6 1E-15 3.4E-20 134.7 8.1 75 68-142 1-77 (101)
100 2cqp_A RNA-binding protein 12; 99.6 9.1E-16 3.1E-20 134.1 7.7 78 63-140 11-95 (98)
101 2mss_A Protein (musashi1); RNA 99.6 7.8E-16 2.7E-20 127.8 6.9 69 69-137 1-75 (75)
102 2cqg_A TDP-43, TAR DNA-binding 99.6 5E-15 1.7E-19 130.7 12.5 82 61-143 9-96 (103)
103 2kt5_A RNA and export factor-b 99.6 3.6E-15 1.2E-19 136.3 11.9 81 64-144 32-118 (124)
104 2i2y_A Fusion protein consists 99.6 2.8E-15 9.6E-20 141.6 11.4 79 62-140 68-148 (150)
105 2dh8_A DAZ-associated protein 99.6 1.4E-15 4.8E-20 134.7 8.7 83 62-144 11-99 (105)
106 2cpx_A Hypothetical protein FL 99.6 2.2E-15 7.4E-20 135.6 10.0 81 64-144 22-109 (115)
107 2cq2_A Hypothetical protein LO 99.6 2.3E-15 7.8E-20 136.6 10.1 79 65-143 23-109 (114)
108 2cpy_A RNA-binding protein 12; 99.6 1.8E-15 6.3E-20 136.5 9.4 78 63-140 11-94 (114)
109 1x4b_A Heterogeneous nuclear r 99.6 3.3E-15 1.1E-19 134.9 11.0 79 65-143 25-109 (116)
110 1p1t_A Cleavage stimulation fa 99.6 6.8E-16 2.3E-20 136.2 6.2 77 65-141 6-89 (104)
111 2fc9_A NCL protein; structure 99.6 2.8E-15 9.7E-20 131.8 10.2 80 63-142 11-93 (101)
112 2lea_A Serine/arginine-rich sp 99.6 1.5E-15 5.1E-20 141.7 8.8 81 63-143 43-130 (135)
113 3n9u_C Cleavage and polyadenyl 99.6 1.8E-15 6.3E-20 144.7 9.3 74 66-139 54-136 (156)
114 2m2b_A RNA-binding protein 10; 99.6 1E-15 3.5E-20 141.6 7.4 82 60-142 16-110 (131)
115 2j76_E EIF-4B, EIF4B, eukaryot 99.6 1.1E-15 3.9E-20 134.6 7.3 76 64-140 16-98 (100)
116 1rk8_A CG8781-PA, CG8781-PA pr 99.6 2.5E-15 8.4E-20 144.5 10.1 80 64-143 69-155 (165)
117 2jwn_A Embryonic polyadenylate 99.6 2.6E-15 8.8E-20 137.0 9.5 75 67-141 36-116 (124)
118 1wg5_A Heterogeneous nuclear r 99.6 9E-15 3.1E-19 129.8 12.4 78 64-141 12-95 (104)
119 2kn4_A Immunoglobulin G-bindin 99.6 6E-15 2E-19 140.1 11.9 81 63-143 66-153 (158)
120 1wg1_A KIAA1579 protein, homol 99.6 2.5E-15 8.4E-20 129.2 8.4 74 66-140 4-78 (88)
121 2krb_A Eukaryotic translation 99.6 2E-15 6.8E-20 127.6 7.7 68 67-134 1-80 (81)
122 2dgw_A Probable RNA-binding pr 99.6 4.8E-15 1.7E-19 127.8 10.1 77 64-141 7-88 (91)
123 2ek1_A RNA-binding protein 12; 99.6 9.8E-16 3.3E-20 133.0 5.7 74 66-139 14-94 (95)
124 1x4e_A RNA binding motif, sing 99.6 8.8E-16 3E-20 130.7 5.1 74 65-138 3-83 (85)
125 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 6.5E-15 2.2E-19 136.7 11.2 76 62-137 58-140 (140)
126 1x5o_A RNA binding motif, sing 99.6 7.3E-15 2.5E-19 132.0 11.0 79 62-140 20-112 (114)
127 2db1_A Heterogeneous nuclear r 99.6 3.2E-15 1.1E-19 136.1 8.6 77 63-139 13-97 (118)
128 1sjr_A Polypyrimidine tract-bi 99.6 4.9E-15 1.7E-19 142.5 10.1 75 67-141 46-125 (164)
129 2e5g_A U6 snRNA-specific termi 99.6 1E-14 3.6E-19 126.7 10.9 77 66-142 7-84 (94)
130 1fjc_A Nucleolin RBD2, protein 99.6 3E-15 1E-19 130.3 7.5 80 63-142 12-93 (96)
131 1wel_A RNA-binding protein 12; 99.6 2E-15 6.8E-20 138.2 6.4 76 64-139 22-103 (124)
132 1wez_A HnRNP H', FTP-3, hetero 99.6 2.7E-15 9.1E-20 133.2 6.9 77 64-141 12-93 (102)
133 2e44_A Insulin-like growth fac 99.6 9.6E-15 3.3E-19 127.1 10.0 76 65-140 13-92 (96)
134 2hzc_A Splicing factor U2AF 65 99.6 6.8E-15 2.3E-19 125.4 8.8 71 66-136 5-86 (87)
135 2ki2_A SS-DNA binding protein 99.6 1.1E-15 3.8E-20 131.5 3.8 75 68-143 2-83 (90)
136 1fj7_A Nucleolin RBD1, protein 99.6 1.6E-15 5.4E-20 133.4 4.8 80 64-143 14-98 (101)
137 2e5i_A Heterogeneous nuclear r 99.6 1.1E-14 3.9E-19 134.0 10.6 73 69-141 27-103 (124)
138 2bz2_A Negative elongation fac 99.6 8.6E-15 2.9E-19 134.1 9.7 77 64-142 36-113 (121)
139 1iqt_A AUF1, heterogeneous nuc 99.6 2.1E-15 7.3E-20 125.1 5.2 69 69-137 1-75 (75)
140 2fc8_A NCL protein; structure 99.6 9.5E-15 3.3E-19 128.5 9.6 82 62-143 10-95 (102)
141 1uaw_A Mouse-musashi-1; RNP-ty 99.6 2.8E-15 9.6E-20 124.8 5.9 69 68-137 1-76 (77)
142 3d2w_A TAR DNA-binding protein 99.6 1.2E-14 4.2E-19 125.7 9.8 75 64-141 8-85 (89)
143 3zzy_A Polypyrimidine tract-bi 99.5 1.4E-14 4.7E-19 134.4 10.6 74 67-140 28-106 (130)
144 3egn_A RNA-binding protein 40; 99.5 7.4E-15 2.5E-19 137.6 8.4 79 65-143 43-133 (143)
145 2lmi_A GRSF-1, G-rich sequence 99.5 4.9E-15 1.7E-19 132.2 6.3 77 63-139 7-91 (107)
146 2dnn_A RNA-binding protein 12; 99.5 1.6E-14 5.5E-19 130.0 9.6 72 67-139 16-92 (109)
147 3q2s_C Cleavage and polyadenyl 99.5 7.2E-15 2.5E-19 149.2 8.2 74 66-139 67-149 (229)
148 2f3j_A RNA and export factor b 99.5 1.3E-14 4.5E-19 141.6 9.6 77 65-141 86-168 (177)
149 1wf0_A TDP-43, TAR DNA-binding 99.5 1.6E-14 5.5E-19 123.9 8.6 77 66-143 4-81 (88)
150 2hgl_A HNRPF protein, heteroge 99.5 8.8E-15 3E-19 136.9 7.3 77 63-139 40-124 (136)
151 3tyt_A Heterogeneous nuclear r 99.5 2.9E-14 9.9E-19 142.2 11.0 75 66-140 3-80 (205)
152 2diu_A KIAA0430 protein; struc 99.5 3.4E-14 1.2E-18 123.8 9.5 73 67-143 8-87 (96)
153 3md3_A Nuclear and cytoplasmic 99.5 2.9E-14 9.8E-19 134.5 9.2 94 68-161 1-100 (166)
154 2lcw_A RNA-binding protein FUS 99.3 1.3E-15 4.6E-20 137.5 0.0 80 64-143 4-98 (116)
155 4f02_A Polyadenylate-binding p 99.5 1.5E-14 5.1E-19 144.4 7.4 95 66-160 14-115 (213)
156 2hgn_A Heterogeneous nuclear r 99.5 8.8E-15 3E-19 137.4 5.1 78 64-142 43-125 (139)
157 3u1l_A PRE-mRNA-splicing facto 99.5 3.1E-14 1.1E-18 145.2 9.1 79 64-142 131-231 (240)
158 2hgm_A HNRPF protein, heteroge 99.5 3.6E-14 1.2E-18 131.1 8.2 74 65-139 40-120 (126)
159 2xs2_A Deleted in azoospermia- 99.5 1.4E-14 4.9E-19 127.5 5.2 76 65-141 7-87 (102)
160 2dha_A FLJ20171 protein; RRM d 99.5 2.2E-14 7.4E-19 132.0 5.9 73 66-138 22-103 (123)
161 1b7f_A Protein (SXL-lethal pro 99.5 9.8E-14 3.4E-18 131.5 10.6 93 66-160 2-101 (168)
162 4f02_A Polyadenylate-binding p 99.5 6.4E-14 2.2E-18 139.8 9.7 74 66-139 102-180 (213)
163 3md3_A Nuclear and cytoplasmic 99.5 1.5E-13 5.1E-18 129.5 10.3 76 63-138 83-165 (166)
164 1fxl_A Paraneoplastic encephal 99.5 2.2E-13 7.5E-18 128.5 10.9 92 67-160 2-100 (167)
165 2qfj_A FBP-interacting repress 99.5 2E-13 6.8E-18 134.9 10.9 78 65-142 123-207 (216)
166 1l3k_A Heterogeneous nuclear r 99.4 1.4E-13 4.7E-18 134.0 9.3 78 64-141 10-93 (196)
167 2cjk_A Nuclear polyadenylated 99.4 1.1E-13 3.8E-18 131.1 7.6 75 66-140 86-166 (167)
168 2adc_A Polypyrimidine tract-bi 99.4 2.7E-13 9.3E-18 136.7 10.7 78 63-140 30-110 (229)
169 1l3k_A Heterogeneous nuclear r 99.4 2.7E-13 9.1E-18 131.9 9.9 79 65-143 102-186 (196)
170 3pgw_A U1-A; protein-RNA compl 99.4 3.3E-13 1.1E-17 139.5 11.3 76 63-138 203-281 (282)
171 2yh0_A Splicing factor U2AF 65 99.4 3.5E-13 1.2E-17 131.3 10.1 78 65-142 112-196 (198)
172 3sde_A Paraspeckle component 1 99.4 4.1E-13 1.4E-17 138.2 10.8 77 63-139 18-95 (261)
173 2g4b_A Splicing factor U2AF 65 99.4 3E-13 1E-17 128.8 9.0 73 65-137 92-171 (172)
174 3pgw_A U1-A; protein-RNA compl 99.4 5.5E-13 1.9E-17 137.9 11.4 79 63-141 5-91 (282)
175 2g4b_A Splicing factor U2AF 65 99.4 5.2E-13 1.8E-17 127.1 10.3 94 66-161 3-107 (172)
176 2voo_A Lupus LA protein; RNA-b 99.4 4.4E-13 1.5E-17 132.5 9.8 74 67-140 109-187 (193)
177 2yh0_A Splicing factor U2AF 65 99.4 5.7E-13 2E-17 129.7 10.3 75 66-140 3-88 (198)
178 2qfj_A FBP-interacting repress 99.4 5.4E-13 1.9E-17 131.7 10.1 74 67-140 28-108 (216)
179 1fje_B Nucleolin RBD12, protei 99.4 4.2E-13 1.4E-17 128.5 8.9 98 63-160 9-111 (175)
180 2dnl_A Cytoplasmic polyadenyla 99.4 3.2E-13 1.1E-17 121.8 7.5 71 65-138 6-86 (114)
181 1fje_B Nucleolin RBD12, protei 99.4 4.5E-13 1.5E-17 128.3 8.9 77 63-140 95-174 (175)
182 2dit_A HIV TAT specific factor 99.4 1.5E-12 5.1E-17 117.1 11.6 79 63-141 11-103 (112)
183 1b7f_A Protein (SXL-lethal pro 99.4 1.1E-12 3.8E-17 124.1 10.8 75 63-137 85-168 (168)
184 1qm9_A Polypyrimidine tract-bi 99.4 4.4E-13 1.5E-17 131.3 8.2 74 67-140 3-79 (198)
185 3nmr_A Cugbp ELAV-like family 99.4 6.9E-13 2.3E-17 126.3 9.2 74 65-138 93-175 (175)
186 2adc_A Polypyrimidine tract-bi 99.4 1.2E-12 4E-17 132.0 11.3 76 65-140 149-228 (229)
187 3nmr_A Cugbp ELAV-like family 99.4 7.5E-13 2.6E-17 126.0 9.4 95 66-161 2-108 (175)
188 1qm9_A Polypyrimidine tract-bi 99.4 1E-12 3.6E-17 128.5 10.4 76 65-140 118-197 (198)
189 2pe8_A Splicing factor 45; RRM 99.4 1.8E-12 6.2E-17 115.8 10.2 75 65-139 6-93 (105)
190 1fxl_A Paraneoplastic encephal 99.4 1.3E-12 4.3E-17 123.3 9.4 74 64-137 85-167 (167)
191 2j8a_A Histone-lysine N-methyl 99.3 8.5E-13 2.9E-17 121.3 7.0 73 67-139 2-95 (136)
192 2cjk_A Nuclear polyadenylated 99.3 1.6E-12 5.6E-17 123.0 8.1 73 66-139 2-80 (167)
193 3smz_A Protein raver-1, ribonu 99.3 4.5E-12 1.5E-16 131.2 11.0 72 66-138 21-93 (284)
194 2ghp_A U4/U6 snRNA-associated 99.3 2.6E-12 8.8E-17 133.5 9.1 76 63-138 37-116 (292)
195 3tyt_A Heterogeneous nuclear r 99.3 2.3E-12 7.7E-17 128.5 7.7 73 65-137 121-204 (205)
196 2ghp_A U4/U6 snRNA-associated 99.3 3.7E-12 1.3E-16 132.3 9.7 78 63-140 206-291 (292)
197 3smz_A Protein raver-1, ribonu 99.3 5.3E-12 1.8E-16 130.7 9.6 80 63-142 180-266 (284)
198 3tht_A Alkylated DNA repair pr 99.3 7.1E-12 2.4E-16 134.2 9.9 76 63-138 14-97 (345)
199 3sde_A Paraspeckle component 1 99.3 6.4E-11 2.2E-15 121.7 16.1 76 66-141 95-180 (261)
200 2d9o_A DNAJ (HSP40) homolog, s 99.3 3.2E-11 1.1E-15 106.8 11.8 75 67-143 10-93 (100)
201 3v4m_A Splicing factor U2AF 65 99.2 2.2E-11 7.4E-16 108.7 9.2 75 65-139 3-96 (105)
202 1jmt_A Splicing factor U2AF 35 99.2 6.6E-12 2.3E-16 111.8 4.0 67 71-137 19-103 (104)
203 3ue2_A Poly(U)-binding-splicin 99.2 7.3E-11 2.5E-15 107.6 9.0 74 66-139 19-108 (118)
204 3s6e_A RNA-binding protein 39; 99.1 1.1E-10 3.9E-15 105.7 9.9 74 66-139 6-92 (114)
205 1owx_A Lupus LA protein, SS-B, 99.1 2.9E-10 1E-14 103.9 9.9 76 64-139 15-95 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.0 1.2E-09 4.1E-14 94.3 8.7 74 66-141 6-87 (91)
207 1ufw_A Synaptojanin 2; RNP dom 98.7 1.4E-08 4.7E-13 88.1 5.5 72 65-138 13-93 (95)
208 3dxb_A Thioredoxin N-terminall 98.5 2.6E-07 8.9E-12 92.3 9.5 72 68-139 125-212 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.5 4.3E-07 1.5E-11 80.5 8.6 71 65-135 19-95 (117)
210 1wey_A Calcipressin 1; structu 98.2 5E-06 1.7E-10 73.3 9.2 78 66-143 4-87 (104)
211 3pgw_S U1-70K; protein-RNA com 97.7 8.1E-06 2.8E-10 90.2 2.3 37 84-120 9-58 (437)
212 2dhx_A Poly (ADP-ribose) polym 97.7 0.00047 1.6E-08 60.6 12.7 74 65-140 6-84 (104)
213 1wwh_A Nucleoporin 35, nucleop 97.5 0.00031 1.1E-08 63.5 9.3 72 66-138 23-95 (119)
214 1uw4_A UPF3X; nonsense mediate 97.1 0.0018 6.3E-08 55.8 8.6 62 68-129 2-72 (91)
215 3p3d_A Nucleoporin 53; structu 97.1 0.00046 1.6E-08 63.3 4.7 71 67-138 7-97 (132)
216 1whv_A Poly(A)-specific ribonu 96.3 0.015 5.3E-07 50.5 8.7 53 67-122 16-69 (100)
217 2l08_A Regulator of nonsense t 96.2 0.0076 2.6E-07 52.5 6.2 72 67-138 9-94 (97)
218 3ctr_A Poly(A)-specific ribonu 95.9 0.0087 3E-07 52.2 4.9 52 69-123 8-60 (101)
219 3pq1_A Poly(A) RNA polymerase; 95.6 0.0055 1.9E-07 67.8 3.2 61 67-128 53-114 (464)
220 2i2y_A Fusion protein consists 93.4 0.033 1.1E-06 51.5 2.6 38 101-139 11-50 (150)
221 2kn4_A Immunoglobulin G-bindin 92.3 0.089 3E-06 48.7 3.8 25 101-125 11-36 (158)
222 2g0c_A ATP-dependent RNA helic 82.8 2.1 7.1E-05 34.8 5.7 67 69-138 2-75 (76)
223 3d45_A Poly(A)-specific ribonu 80.6 2.7 9.1E-05 47.0 7.4 54 67-123 440-494 (507)
224 4eyt_A Telomerase associated p 66.2 28 0.00095 29.5 8.3 53 66-120 11-63 (129)
225 4e8u_A Putative uncharacterize 58.9 16 0.00055 34.8 6.3 56 68-123 13-83 (172)
226 3fry_A Probable copper-exporti 48.5 37 0.0013 26.2 6.0 59 67-126 6-64 (73)
227 2l3m_A Copper-ION-binding prot 44.6 82 0.0028 23.2 7.4 59 68-126 7-69 (71)
228 1cpz_A Protein (COPZ); copper 40.8 1E+02 0.0034 22.3 9.0 58 68-125 2-63 (68)
229 1osd_A MERP, hypothetical prot 40.6 1.1E+02 0.0036 22.5 7.6 57 69-125 6-66 (72)
230 4f25_A Polyadenylate-binding p 40.5 7.2 0.00025 33.8 0.6 19 65-83 95-113 (115)
231 2xmw_A PACS-N, cation-transpor 39.7 89 0.003 22.8 6.9 52 69-120 6-60 (71)
232 3dxs_X Copper-transporting ATP 36.9 81 0.0028 24.0 6.4 58 68-125 4-65 (74)
233 1yg0_A COP associated protein; 36.6 72 0.0024 23.0 5.8 52 69-120 4-58 (66)
234 4a4j_A Pacszia, cation-transpo 36.4 1.3E+02 0.0044 22.3 7.6 58 68-125 4-64 (69)
235 2kt2_A Mercuric reductase; nme 35.4 1.3E+02 0.0044 21.9 7.9 57 69-125 3-62 (69)
236 1q8l_A Copper-transporting ATP 35.2 1.6E+02 0.0054 22.9 8.3 59 67-125 10-72 (84)
237 2qif_A Copper chaperone COPZ; 34.1 1.3E+02 0.0043 21.4 7.6 57 69-125 5-65 (69)
238 3swz_A Steroid 17-alpha-hydrox 33.9 43 0.0015 35.8 5.7 60 69-131 16-79 (494)
239 3cjk_B Copper-transporting ATP 33.5 1.5E+02 0.005 22.1 7.4 57 69-125 5-65 (75)
240 3ts2_A Protein LIN-28 homolog 32.2 7.7 0.00026 36.0 -0.6 28 82-111 2-29 (148)
241 1mwy_A ZNTA; open-faced beta-s 32.1 1.6E+02 0.0053 21.9 8.3 53 68-120 5-59 (73)
242 3lpe_A Putative transcription 32.0 1E+02 0.0035 25.8 6.5 33 93-125 39-73 (92)
243 1yjr_A Copper-transporting ATP 30.6 1.1E+02 0.0039 22.6 6.2 46 67-112 5-50 (75)
244 2ofg_X Zinc-transporting ATPas 30.5 2E+02 0.0069 24.1 8.4 60 68-127 10-73 (111)
245 1opz_A Potential copper-transp 29.8 1.7E+02 0.0056 21.5 7.8 58 68-125 8-69 (76)
246 2j5a_A 30S ribosomal protein S 28.7 83 0.0028 27.4 5.5 58 69-128 12-94 (110)
247 1kvi_A Copper-transporting ATP 26.6 1.6E+02 0.0054 22.2 6.5 59 67-125 9-71 (79)
248 2ldi_A Zinc-transporting ATPas 25.8 1.8E+02 0.0063 20.8 7.2 59 68-126 5-67 (71)
249 1aw0_A Menkes copper-transport 24.8 1.1E+02 0.0036 22.5 5.0 58 68-125 5-66 (72)
250 1fvq_A Copper-transporting ATP 24.4 1.4E+02 0.0047 21.8 5.6 52 69-120 5-59 (72)
251 1y3j_A Copper-transporting ATP 23.8 1.3E+02 0.0044 22.7 5.4 57 69-125 6-66 (77)
252 3tbg_A Cytochrome P450 2D6; mo 23.4 39 0.0013 35.8 2.8 57 71-130 20-79 (479)
253 2kkh_A Putative heavy metal tr 23.4 2.8E+02 0.0096 22.0 8.2 53 68-120 18-74 (95)
254 1i4w_A Mitochondrial replicati 22.6 75 0.0026 33.5 4.8 23 68-90 143-165 (353)
255 3pm0_A Cypib1, cytochrome P450 20.7 1.1E+02 0.0036 32.6 5.7 58 70-130 18-77 (507)
No 1
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.84 E-value=2e-19 Score=199.18 Aligned_cols=80 Identities=21% Similarity=0.342 Sum_probs=73.1
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEE
Q 005703 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVE 135 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~ 135 (682)
...+.++|||+|||+.||+++|.+||.+||.|+.|.|+ ..+|||||+|.+.++|+.|| .|||++|+|+.|.|.
T Consensus 98 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 98 QGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999997 25899999999999999999 899999999999999
Q ss_pred ecccCCC
Q 005703 136 MAKSFPQ 142 (682)
Q Consensus 136 ~a~~~~~ 142 (682)
|+.+...
T Consensus 178 ~a~~~~~ 184 (437)
T 3pgw_S 178 VERGRTV 184 (437)
T ss_pred EeCCCCC
Confidence 9986544
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.73 E-value=1e-17 Score=148.12 Aligned_cols=75 Identities=25% Similarity=0.440 Sum_probs=69.7
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEec
Q 005703 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMA 137 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a 137 (682)
...++|||+|||+.+|+++|+++|.+||.|..|.|+ ..+|||||+|.+.++|+.|| .|||..|.|+.|.|.||
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 346899999999999999999999999999999987 25689999999999999999 89999999999999999
Q ss_pred cc
Q 005703 138 KS 139 (682)
Q Consensus 138 ~~ 139 (682)
++
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 3
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.7e-17 Score=147.12 Aligned_cols=81 Identities=17% Similarity=0.225 Sum_probs=73.6
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcC--CceecCceEEEEecccC
Q 005703 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALN--NMDVGGRPLNVEMAKSF 140 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Ln--g~~l~Gr~L~V~~a~~~ 140 (682)
+...++|||+|||+.+|+++|+++|.+||.|+.|.|+..+|||||+|.+.++|+.|| .|+ +..|.|+.|.|.|+...
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~ 92 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 92 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCC
Confidence 345889999999999999999999999999999999988999999999999999999 676 47999999999999876
Q ss_pred CCCC
Q 005703 141 PQKP 144 (682)
Q Consensus 141 ~~~~ 144 (682)
....
T Consensus 93 ~~~~ 96 (105)
T 1sjq_A 93 ELKT 96 (105)
T ss_dssp SCCC
T ss_pred CCCc
Confidence 5544
No 4
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.69 E-value=5.7e-17 Score=146.81 Aligned_cols=76 Identities=24% Similarity=0.408 Sum_probs=70.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe----cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecccCC
Q 005703 67 KKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT----DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKSFP 141 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~----~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~~~ 141 (682)
.++|||+|||+.+|+++|+++|..||.|..|.|+ .++|||||+|.+.++|+.|| .|||+.|+|+.|.|.++....
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 84 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcc
Confidence 6789999999999999999999999999999997 35789999999999999999 899999999999999988654
Q ss_pred C
Q 005703 142 Q 142 (682)
Q Consensus 142 ~ 142 (682)
.
T Consensus 85 ~ 85 (115)
T 4f25_A 85 E 85 (115)
T ss_dssp C
T ss_pred c
Confidence 3
No 5
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.1e-16 Score=140.41 Aligned_cols=82 Identities=17% Similarity=0.210 Sum_probs=74.0
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-Hc--CCceecCceEEEEeccc
Q 005703 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-AL--NNMDVGGRPLNVEMAKS 139 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~L--ng~~l~Gr~L~V~~a~~ 139 (682)
...+.++|||+|||+.+|+++|+++|.+||.|..|.|+..+|||||+|.+.++|+.|| .| ++..|.|+.|.|.|+..
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 90 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNH 90 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCc
Confidence 4456789999999999999999999999999999999988999999999999999999 65 57889999999999987
Q ss_pred CCCCC
Q 005703 140 FPQKP 144 (682)
Q Consensus 140 ~~~~~ 144 (682)
.....
T Consensus 91 ~~~~~ 95 (101)
T 2cq1_A 91 KELKT 95 (101)
T ss_dssp SSCCC
T ss_pred ccCcC
Confidence 65443
No 6
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.69 E-value=8.6e-17 Score=142.61 Aligned_cols=77 Identities=16% Similarity=0.190 Sum_probs=71.6
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCce--ecCceEEEEecccC
Q 005703 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMD--VGGRPLNVEMAKSF 140 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~--l~Gr~L~V~~a~~~ 140 (682)
..+.++|||+|||+.+|+++|.++|.+||.|..|.|+..+|||||+|.+.++|..|| .|||.. |.|+.|.|+|++..
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecccc
Confidence 346889999999999999999999999999999999988999999999999999999 798865 78999999999864
No 7
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.5e-16 Score=138.13 Aligned_cols=83 Identities=27% Similarity=0.404 Sum_probs=75.3
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe----cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEe
Q 005703 62 KADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT----DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEM 136 (682)
Q Consensus 62 ~~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~----~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~ 136 (682)
......++|||+|||+.+|+++|+++|..||.|..|.|+ ..+|||||+|.+.++|+.|| .|||+.|.|+.|.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345668999999999999999999999999999999998 34899999999999999999 7999999999999999
Q ss_pred cccCCCCC
Q 005703 137 AKSFPQKP 144 (682)
Q Consensus 137 a~~~~~~~ 144 (682)
+.......
T Consensus 90 a~~~~~~~ 97 (103)
T 2cq3_A 90 ATARVMTN 97 (103)
T ss_dssp CCSSCCCC
T ss_pred cccCCCCC
Confidence 98765544
No 8
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.1e-16 Score=138.53 Aligned_cols=82 Identities=29% Similarity=0.450 Sum_probs=74.5
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEec----CCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEe
Q 005703 62 KADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITD----SKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEM 136 (682)
Q Consensus 62 ~~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~----~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~ 136 (682)
..+...++|||+|||+.+|+++|+++|..||.|..|.|+. .+|||||+|.+.++|+.|| .|||..|.|+.|.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 3456689999999999999999999999999999999973 5799999999999999999 7999999999999999
Q ss_pred cccCCCC
Q 005703 137 AKSFPQK 143 (682)
Q Consensus 137 a~~~~~~ 143 (682)
+......
T Consensus 90 a~~~~~~ 96 (103)
T 2cqi_A 90 ATTPSSQ 96 (103)
T ss_dssp CCCTTCC
T ss_pred CCCCccc
Confidence 9875543
No 9
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.5e-16 Score=139.67 Aligned_cols=82 Identities=23% Similarity=0.406 Sum_probs=74.4
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe---cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEec
Q 005703 62 KADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT---DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMA 137 (682)
Q Consensus 62 ~~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~---~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a 137 (682)
......++|||+|||+.+|+++|+++|.+||.|..|.|. ..+|||||+|.+.++|+.|| .|||+.|.|+.|.|.|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 345567899999999999999999999999999999997 35789999999999999999 89999999999999999
Q ss_pred ccCCCC
Q 005703 138 KSFPQK 143 (682)
Q Consensus 138 ~~~~~~ 143 (682)
......
T Consensus 97 ~~~~~~ 102 (109)
T 1x4a_A 97 RSGRGT 102 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 876543
No 10
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=144.14 Aligned_cols=75 Identities=16% Similarity=0.191 Sum_probs=70.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEec
Q 005703 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMA 137 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a 137 (682)
.+.++|||+||++.+|+++|+++|.+||.|..|.|+ .++|||||+|.+.++|+.|| .|||+.|.|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 457899999999999999999999999999999986 35789999999999999999 89999999999999998
Q ss_pred cc
Q 005703 138 KS 139 (682)
Q Consensus 138 ~~ 139 (682)
..
T Consensus 84 ~~ 85 (110)
T 3s8s_A 84 IK 85 (110)
T ss_dssp ST
T ss_pred CC
Confidence 64
No 11
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.3e-16 Score=146.00 Aligned_cols=82 Identities=17% Similarity=0.225 Sum_probs=74.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcC--CceecCceEEEEecccC
Q 005703 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALN--NMDVGGRPLNVEMAKSF 140 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Ln--g~~l~Gr~L~V~~a~~~ 140 (682)
..+.++|||+|||+.+|+++|+++|.+||.|+.|.|+..+|||||+|.+.++|+.|| .|+ +..|.|+.|.|.|+...
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k 107 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 107 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCC
Confidence 445789999999999999999999999999999999988999999999999999999 787 47899999999999876
Q ss_pred CCCCC
Q 005703 141 PQKPS 145 (682)
Q Consensus 141 ~~~~~ 145 (682)
.....
T Consensus 108 ~~~~~ 112 (119)
T 2ad9_A 108 ELKTD 112 (119)
T ss_dssp SCCCC
T ss_pred CCCcc
Confidence 65543
No 12
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.68 E-value=2.7e-16 Score=141.66 Aligned_cols=84 Identities=23% Similarity=0.418 Sum_probs=75.4
Q ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEec------CCCeEEEEeCCHHHHHHHH-HcCCceecCceEE
Q 005703 61 GKADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITD------SKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLN 133 (682)
Q Consensus 61 ~~~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~------~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~ 133 (682)
.......++|||+|||+.+|+++|+++|..||.|..|.|+. .+|||||+|.+.++|+.|| .|||+.|.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34556789999999999999999999999999999999972 3689999999999999999 7999999999999
Q ss_pred EEecccCCCCC
Q 005703 134 VEMAKSFPQKP 144 (682)
Q Consensus 134 V~~a~~~~~~~ 144 (682)
|.|+.......
T Consensus 89 V~~a~~~~~~~ 99 (115)
T 2dgo_A 89 TNWATRKPPAP 99 (115)
T ss_dssp EEESSCCCCCS
T ss_pred EEEccCCCCCC
Confidence 99998765543
No 13
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.68 E-value=7.9e-17 Score=138.93 Aligned_cols=73 Identities=26% Similarity=0.236 Sum_probs=70.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecc
Q 005703 66 LKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAK 138 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~ 138 (682)
...-|||+||++.+|+++|+++|.+||+|..|.|..++|||||+|.+.++|+.|| .|||..|.|+.|.|.+|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 4678999999999999999999999999999999989999999999999999999 899999999999999984
No 14
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=9.3e-17 Score=143.05 Aligned_cols=77 Identities=22% Similarity=0.303 Sum_probs=71.0
Q ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCC--ceecCceEEEEeccc
Q 005703 64 DALKKTLQVSNLSP-LLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALNN--MDVGGRPLNVEMAKS 139 (682)
Q Consensus 64 ~~~~~tL~V~NLp~-~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng--~~l~Gr~L~V~~a~~ 139 (682)
..+.++|||+|||+ .+|+++|.++|.+||.|..|.|+..+|||||+|.+.++|+.|| .||+ ..|.|+.|.|.|+..
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 34678999999999 9999999999999999999999988899999999999999999 7875 569999999999985
Q ss_pred C
Q 005703 140 F 140 (682)
Q Consensus 140 ~ 140 (682)
.
T Consensus 92 ~ 92 (102)
T 1x4d_A 92 Y 92 (102)
T ss_dssp C
T ss_pred C
Confidence 4
No 15
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.3e-16 Score=135.61 Aligned_cols=76 Identities=29% Similarity=0.414 Sum_probs=71.4
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-Hc-CCceecCceEEEEecc
Q 005703 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-AL-NNMDVGGRPLNVEMAK 138 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~L-ng~~l~Gr~L~V~~a~ 138 (682)
.+...++|||+|||+.+|+++|+++|.+||.|..|.|+..+|||||+|.+.++|+.|| .| ||..|.|+.|.|.|++
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 3456789999999999999999999999999999999988999999999999999999 68 9999999999999974
No 16
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2.2e-16 Score=138.09 Aligned_cols=79 Identities=29% Similarity=0.428 Sum_probs=73.5
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCceec--CceEEEEeccc
Q 005703 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDVG--GRPLNVEMAKS 139 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l~--Gr~L~V~~a~~ 139 (682)
...+.++|||+|||+.+|+++|+++|..||.|..|.|...+|||||+|.+.++|+.|| .|||..|. |+.|.|.|+.+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence 3445789999999999999999999999999999999977999999999999999999 79999999 99999999987
Q ss_pred CC
Q 005703 140 FP 141 (682)
Q Consensus 140 ~~ 141 (682)
..
T Consensus 93 ~~ 94 (97)
T 1why_A 93 GP 94 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 17
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.5e-16 Score=134.87 Aligned_cols=79 Identities=27% Similarity=0.444 Sum_probs=73.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecccCCC
Q 005703 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKSFPQ 142 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~~~~ 142 (682)
....++|||+|||+.+|+++|+++|.+||.|..|.|+ +|||||+|.+.++|+.|| .|||..|.|+.|.|.|+.....
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 3467899999999999999999999999999999998 899999999999999999 8999999999999999987654
Q ss_pred CC
Q 005703 143 KP 144 (682)
Q Consensus 143 ~~ 144 (682)
..
T Consensus 83 ~~ 84 (90)
T 2dnq_A 83 AS 84 (90)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 18
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2.3e-16 Score=140.88 Aligned_cols=81 Identities=14% Similarity=0.165 Sum_probs=72.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCC--ceecCceEEEEecccC
Q 005703 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALNN--MDVGGRPLNVEMAKSF 140 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng--~~l~Gr~L~V~~a~~~ 140 (682)
..+.++|||+|||+.+++++|+++|.+||.|..|.|+..+|||||+|.+.++|+.|| .|++ ..|.|+.|.|.|+...
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~ 91 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSK 91 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCc
Confidence 446789999999999999999999999999999999988999999999999999999 6765 5699999999999876
Q ss_pred CCCC
Q 005703 141 PQKP 144 (682)
Q Consensus 141 ~~~~ 144 (682)
....
T Consensus 92 ~~~~ 95 (104)
T 1wex_A 92 RITR 95 (104)
T ss_dssp SCCC
T ss_pred cccC
Confidence 5443
No 19
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=4.4e-16 Score=136.52 Aligned_cols=81 Identities=19% Similarity=0.333 Sum_probs=74.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEec
Q 005703 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEMA 137 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~a 137 (682)
....++|||+|||..+|+++|+++|..||.|..|.|+ ..+|||||+|.+.++|+.||.|||..|.|+.|.|.|+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4467899999999999999999999999999999997 2579999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 005703 138 KSFPQKP 144 (682)
Q Consensus 138 ~~~~~~~ 144 (682)
.......
T Consensus 87 ~~~~~~~ 93 (99)
T 2dgs_A 87 EPRDSKS 93 (99)
T ss_dssp CCCCCCC
T ss_pred CCCcccC
Confidence 8765543
No 20
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.3e-16 Score=135.61 Aligned_cols=80 Identities=30% Similarity=0.568 Sum_probs=73.2
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecccCC
Q 005703 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKSFP 141 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~~~ 141 (682)
.....++|||+|||+.+|+++|+++|..||.|..|.|+ ++||||+|.+.++|+.|| .|||..|.|+.|.|.|+....
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 34567899999999999999999999999999999998 779999999999999999 899999999999999998765
Q ss_pred CCC
Q 005703 142 QKP 144 (682)
Q Consensus 142 ~~~ 144 (682)
...
T Consensus 84 ~~~ 86 (92)
T 2dgt_A 84 RTA 86 (92)
T ss_dssp SCC
T ss_pred CCC
Confidence 443
No 21
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.8e-16 Score=138.78 Aligned_cols=81 Identities=26% Similarity=0.388 Sum_probs=73.5
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEE
Q 005703 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVE 135 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~ 135 (682)
.....++|||+|||+.+|+++|+++|..||.|..|.|+ ..+|||||+|.+.++|+.|| .|||..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34568999999999999999999999999999999997 25799999999999999999 799999999999999
Q ss_pred ecccCCCC
Q 005703 136 MAKSFPQK 143 (682)
Q Consensus 136 ~a~~~~~~ 143 (682)
|+......
T Consensus 89 ~a~~~~~~ 96 (103)
T 2dnm_A 89 VARYGRRD 96 (103)
T ss_dssp ECSSCCSC
T ss_pred ECCcCCCC
Confidence 99875443
No 22
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=3.8e-16 Score=136.77 Aligned_cols=80 Identities=29% Similarity=0.328 Sum_probs=73.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEe
Q 005703 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEM 136 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~ 136 (682)
....++|||+|||+.+|+++|+++|..||.|..|.|+ ..+|||||+|.+.++|+.|| .|||+.|.|+.|.|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3457899999999999999999999999999999997 25699999999999999999 8999999999999999
Q ss_pred cccCCCC
Q 005703 137 AKSFPQK 143 (682)
Q Consensus 137 a~~~~~~ 143 (682)
+......
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9876544
No 23
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3e-16 Score=140.25 Aligned_cols=79 Identities=23% Similarity=0.365 Sum_probs=73.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecccCCCC
Q 005703 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKSFPQK 143 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~~~~~ 143 (682)
...++|||+|||..+|+++|+++|..||.|..|.|+..+|||||+|.+.++|+.|| .|||..|.|+.|.|.|+......
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 102 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDM 102 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCCC
Confidence 35789999999999999999999999999999999977999999999999999999 89999999999999999876543
No 24
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.8e-16 Score=138.77 Aligned_cols=83 Identities=33% Similarity=0.440 Sum_probs=75.3
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe----cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEe
Q 005703 62 KADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT----DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEM 136 (682)
Q Consensus 62 ~~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~----~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~ 136 (682)
......++|||+|||+.+|+++|+++|..||.|..|.|+ ..+|||||+|.+.++|+.|| .|||..|.|+.|.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 345578999999999999999999999999999999998 35799999999999999999 7999999999999999
Q ss_pred cccCCCCC
Q 005703 137 AKSFPQKP 144 (682)
Q Consensus 137 a~~~~~~~ 144 (682)
+.......
T Consensus 90 a~~~~~~~ 97 (103)
T 2d9p_A 90 AQRKEERQ 97 (103)
T ss_dssp CSSCCCCC
T ss_pred ecccccCC
Confidence 98765543
No 25
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.67 E-value=2.5e-16 Score=142.04 Aligned_cols=83 Identities=27% Similarity=0.414 Sum_probs=74.2
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEec------CCCeEEEEeCCHHHHHHHH-HcCCceecCceEEE
Q 005703 62 KADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITD------SKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNV 134 (682)
Q Consensus 62 ~~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~------~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V 134 (682)
......++|||+|||+.+|+++|+++|..||.|..|.|+. .+|||||+|.+.++|+.|| .|||+.|.|+.|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3445678999999999999999999999999999999872 3589999999999999999 89999999999999
Q ss_pred EecccCCCCC
Q 005703 135 EMAKSFPQKP 144 (682)
Q Consensus 135 ~~a~~~~~~~ 144 (682)
.|+.......
T Consensus 100 ~~a~~~~~~~ 109 (115)
T 2cpz_A 100 QLKRSKNDSK 109 (115)
T ss_dssp ECCCCSCCCC
T ss_pred EEcCCCCcCC
Confidence 9998765443
No 26
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.66 E-value=1.7e-16 Score=142.39 Aligned_cols=79 Identities=22% Similarity=0.364 Sum_probs=72.2
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecccC
Q 005703 62 KADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKSF 140 (682)
Q Consensus 62 ~~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~~ 140 (682)
..+...++|||+|||+.+|+++|+++|.+||.|..|.|. +|||||+|.+.++|+.|| .|||..|+|+.|.|.|+...
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 345668999999999999999999999999999999998 999999999999999999 79999999999999999875
Q ss_pred CC
Q 005703 141 PQ 142 (682)
Q Consensus 141 ~~ 142 (682)
..
T Consensus 104 ~~ 105 (108)
T 2jvo_A 104 AK 105 (108)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 27
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=3.5e-16 Score=137.25 Aligned_cols=80 Identities=31% Similarity=0.405 Sum_probs=74.5
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecccCC
Q 005703 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKSFP 141 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~~~ 141 (682)
.....++|||+|||+.+|+++|+++|..||.|..|.|...+|||||+|.+.++|+.|| .|||..|.|+.|.|.|+....
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 4456789999999999999999999999999999999988999999999999999999 899999999999999998754
Q ss_pred C
Q 005703 142 Q 142 (682)
Q Consensus 142 ~ 142 (682)
.
T Consensus 91 ~ 91 (99)
T 2cpj_A 91 S 91 (99)
T ss_dssp C
T ss_pred C
Confidence 3
No 28
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=5.2e-16 Score=137.71 Aligned_cols=82 Identities=22% Similarity=0.355 Sum_probs=74.4
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEec-------CCCeEEEEeCCHHHHHHHH-Hc-CCceecCceE
Q 005703 62 KADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITD-------SKHFAYIEYSKPEEATAAL-AL-NNMDVGGRPL 132 (682)
Q Consensus 62 ~~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~-------~kg~aFVeF~s~e~A~~Al-~L-ng~~l~Gr~L 132 (682)
..+...++|||+|||+.+|+++|+++|..||.|..|.|+. .+|||||+|.+.++|+.|| .| ||..|.|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 3456789999999999999999999999999999999973 3799999999999999999 79 9999999999
Q ss_pred EEEecccCCCC
Q 005703 133 NVEMAKSFPQK 143 (682)
Q Consensus 133 ~V~~a~~~~~~ 143 (682)
.|.|+......
T Consensus 90 ~v~~a~~~~~~ 100 (107)
T 2cph_A 90 VLEWADSEVTV 100 (107)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999876543
No 29
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.66 E-value=3.8e-16 Score=138.24 Aligned_cols=82 Identities=28% Similarity=0.365 Sum_probs=74.0
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEec-----CCCeEEEEeCCHHHHHHHH-HcCCceecC---ceE
Q 005703 62 KADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITD-----SKHFAYIEYSKPEEATAAL-ALNNMDVGG---RPL 132 (682)
Q Consensus 62 ~~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~-----~kg~aFVeF~s~e~A~~Al-~Lng~~l~G---r~L 132 (682)
......++|||+|||+.+|+++|.++|..||.|..|.|+. .+|||||+|.+.++|+.|| .|||..|.| +.|
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 10 SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp CSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 3445689999999999999999999999999999999983 3789999999999999999 799999998 999
Q ss_pred EEEecccCCCC
Q 005703 133 NVEMAKSFPQK 143 (682)
Q Consensus 133 ~V~~a~~~~~~ 143 (682)
.|.|+......
T Consensus 90 ~V~~a~~~~~~ 100 (105)
T 2dnh_A 90 VVKFADTDKES 100 (105)
T ss_dssp EEEESCSSCCC
T ss_pred EEEECccCccc
Confidence 99999876554
No 30
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.9e-16 Score=135.27 Aligned_cols=77 Identities=35% Similarity=0.406 Sum_probs=70.9
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEE
Q 005703 62 KADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNV 134 (682)
Q Consensus 62 ~~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V 134 (682)
......++|||+|||+.+++++|+++|..||.|..|.|+ ..+|||||+|.+.++|+.|| .|||..|.|+.|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345568899999999999999999999999999999997 25789999999999999999 89999999999999
Q ss_pred Eecc
Q 005703 135 EMAK 138 (682)
Q Consensus 135 ~~a~ 138 (682)
.|++
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9975
No 31
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.6e-16 Score=137.76 Aligned_cols=82 Identities=21% Similarity=0.392 Sum_probs=74.1
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEE
Q 005703 62 KADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNV 134 (682)
Q Consensus 62 ~~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V 134 (682)
......++|||+|||+.+|+++|+++|..||.|..|.|+ ..+|||||+|.+.++|+.|| .|||..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345568999999999999999999999999999999997 25689999999999999999 79999999999999
Q ss_pred EecccCCCC
Q 005703 135 EMAKSFPQK 143 (682)
Q Consensus 135 ~~a~~~~~~ 143 (682)
.|+......
T Consensus 90 ~~a~~~~~~ 98 (105)
T 1x5u_A 90 NKASAHNKN 98 (105)
T ss_dssp EETTTTSCC
T ss_pred EECCCCCcC
Confidence 999876543
No 32
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=5.5e-16 Score=134.57 Aligned_cols=78 Identities=28% Similarity=0.401 Sum_probs=72.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecc
Q 005703 66 LKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAK 138 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~ 138 (682)
..++|||+|||+.+|+++|+++|..||.|..|.|+ ..+|||||+|.+.++|+.|| .|||..|.|+.|.|.|+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 57899999999999999999999999999999997 24789999999999999999 799999999999999998
Q ss_pred cCCCC
Q 005703 139 SFPQK 143 (682)
Q Consensus 139 ~~~~~ 143 (682)
.....
T Consensus 84 ~~~~~ 88 (95)
T 2dnz_A 84 ERLDG 88 (95)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 76543
No 33
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=6.2e-16 Score=138.23 Aligned_cols=79 Identities=18% Similarity=0.220 Sum_probs=72.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCceecC-----ceEEEEecc
Q 005703 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDVGG-----RPLNVEMAK 138 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l~G-----r~L~V~~a~ 138 (682)
...++|||+|||+.+|+++|++||.+||.|+.|.|+.. |||||+|.+.++|+.|| .|||+.|.| +.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~ 91 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 91 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCC
Confidence 45789999999999999999999999999999999854 99999999999999999 799999999 999999998
Q ss_pred cCCCCC
Q 005703 139 SFPQKP 144 (682)
Q Consensus 139 ~~~~~~ 144 (682)
......
T Consensus 92 ~~~~~~ 97 (108)
T 1x4c_A 92 PRSPSY 97 (108)
T ss_dssp CCSCCC
T ss_pred CCCCCC
Confidence 765443
No 34
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.66 E-value=4.5e-16 Score=137.70 Aligned_cols=78 Identities=31% Similarity=0.417 Sum_probs=72.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecccCCCC
Q 005703 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKSFPQK 143 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~~~~~ 143 (682)
...++|||+|||+.+|+++|+++|..||.|..|.|+ ++||||+|.+.++|+.|| .|||+.|.|+.|.|.|+......
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQK 86 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCccc
Confidence 457899999999999999999999999999999998 789999999999999999 79999999999999999876544
Q ss_pred C
Q 005703 144 P 144 (682)
Q Consensus 144 ~ 144 (682)
.
T Consensus 87 ~ 87 (103)
T 2dgu_A 87 R 87 (103)
T ss_dssp C
T ss_pred c
Confidence 3
No 35
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3.5e-16 Score=134.88 Aligned_cols=78 Identities=33% Similarity=0.543 Sum_probs=72.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecccCCC
Q 005703 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKSFPQ 142 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~~~~ 142 (682)
....++|||+|||+.+|+++|+++|..||.|..|.|+ ++||||+|.+.++|+.|| .|||..|.|+.|.|.|+.....
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQK 83 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCC
Confidence 4567899999999999999999999999999999998 779999999999999999 7999999999999999987644
Q ss_pred C
Q 005703 143 K 143 (682)
Q Consensus 143 ~ 143 (682)
.
T Consensus 84 ~ 84 (90)
T 2dnp_A 84 K 84 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 36
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.66 E-value=2.7e-16 Score=133.55 Aligned_cols=75 Identities=28% Similarity=0.474 Sum_probs=69.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEe
Q 005703 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEM 136 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~ 136 (682)
....++|||+|||+.+++++|+++|.+||.|..|.|+ ..+|||||+|.+.++|+.|| .|||..|.|+.|.|.|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3468899999999999999999999999999999986 25899999999999999999 8999999999999999
Q ss_pred cc
Q 005703 137 AK 138 (682)
Q Consensus 137 a~ 138 (682)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 37
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=3.1e-16 Score=137.08 Aligned_cols=79 Identities=34% Similarity=0.510 Sum_probs=71.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe---------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEE
Q 005703 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT---------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNV 134 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~---------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V 134 (682)
...++|||+|||+.+|+++|+++|..||.|..|.|+ ..+|||||+|.+.++|+.|| .|||..|.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 357899999999999999999999999999999987 23579999999999999999 79999999999999
Q ss_pred EecccCCCC
Q 005703 135 EMAKSFPQK 143 (682)
Q Consensus 135 ~~a~~~~~~ 143 (682)
.|+......
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999876543
No 38
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.7e-16 Score=138.92 Aligned_cols=82 Identities=28% Similarity=0.396 Sum_probs=73.9
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEE
Q 005703 62 KADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNV 134 (682)
Q Consensus 62 ~~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V 134 (682)
......++|||+|||+.+|+++|+++|..||.|..|.|+ ..+|||||+|.+.++|+.|| .|||+.|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345568999999999999999999999999999999997 24679999999999999999 79999999999999
Q ss_pred EecccCCCC
Q 005703 135 EMAKSFPQK 143 (682)
Q Consensus 135 ~~a~~~~~~ 143 (682)
.|+......
T Consensus 90 ~~a~~~~~~ 98 (103)
T 2cq0_A 90 EWAKPSTNS 98 (103)
T ss_dssp EESSCCCCS
T ss_pred EECCCCCCC
Confidence 999876543
No 39
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.5e-16 Score=139.94 Aligned_cols=74 Identities=26% Similarity=0.363 Sum_probs=71.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEeccc
Q 005703 66 LKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKS 139 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~ 139 (682)
..++|||+|||..+++++|+++|..||.|..|.|...+|||||+|.+.++|+.|| .|||..|+|+.|.|.|++.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 4689999999999999999999999999999999988999999999999999999 8999999999999999875
No 40
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.66 E-value=2.1e-16 Score=143.23 Aligned_cols=69 Identities=19% Similarity=0.245 Sum_probs=62.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEE
Q 005703 66 LKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVE 135 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~ 135 (682)
...+|||+|||+.+|+++|++||.+||+|+.|.|+.. |||||+|.+.++|+.|| .|||++|+|+.|.|.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~ 84 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 84 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeE
Confidence 3689999999999999999999999999999999854 99999999999999999 799999999984443
No 41
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3e-16 Score=138.23 Aligned_cols=82 Identities=27% Similarity=0.439 Sum_probs=74.5
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEE
Q 005703 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVE 135 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~ 135 (682)
.....++|||+|||+.+|+++|+++|..||.|..|.|+ ..+|||||+|.+.++|+.|| .|||..|.|+.|.|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34468999999999999999999999999999999996 35899999999999999999 899999999999999
Q ss_pred ecccCCCCC
Q 005703 136 MAKSFPQKP 144 (682)
Q Consensus 136 ~a~~~~~~~ 144 (682)
|+.+.....
T Consensus 88 ~a~~~~~~~ 96 (102)
T 2cqb_A 88 LAKPMRIKE 96 (102)
T ss_dssp ECCCCCCCC
T ss_pred eCCCCCCCC
Confidence 998765544
No 42
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=3.3e-16 Score=141.07 Aligned_cols=76 Identities=22% Similarity=0.233 Sum_probs=72.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecccCC
Q 005703 66 LKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKSFP 141 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~~~ 141 (682)
..++|||+|||+.+|+++|+++|.+||.|..|.|+..+|||||+|.+.++|+.|| .|||..|.|+.|.|.|+....
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 4679999999999999999999999999999999988999999999999999999 899999999999999998643
No 43
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1e-15 Score=134.23 Aligned_cols=79 Identities=28% Similarity=0.413 Sum_probs=72.5
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC--CCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecc
Q 005703 62 KADALKKTLQVSNLSPLLTVEQLRQLFSFC--GTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAK 138 (682)
Q Consensus 62 ~~~~~~~tL~V~NLp~~vteedL~~~F~~~--G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~ 138 (682)
......++|||+|||+.+|+++|+++|..| |.|..|.+. +|||||+|.+.++|+.|| .|||+.|.|+.|.|.|+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 344567899999999999999999999999 999999987 899999999999999999 799999999999999998
Q ss_pred cCCC
Q 005703 139 SFPQ 142 (682)
Q Consensus 139 ~~~~ 142 (682)
+...
T Consensus 88 ~~~~ 91 (99)
T 2cpd_A 88 PVDK 91 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 44
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.65 E-value=2.4e-16 Score=134.45 Aligned_cols=75 Identities=20% Similarity=0.359 Sum_probs=68.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEec------CCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecc
Q 005703 66 LKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITD------SKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAK 138 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~------~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~ 138 (682)
..++|||+|||..+++++|+++|..||.|..|.|+. .+|||||+|.+.++|+.|| .|||..|.|+.|.|.|+.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 478999999999999999999999999999999972 4689999999999999999 799999999999999997
Q ss_pred cC
Q 005703 139 SF 140 (682)
Q Consensus 139 ~~ 140 (682)
..
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 64
No 45
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=3.5e-16 Score=141.59 Aligned_cols=79 Identities=20% Similarity=0.292 Sum_probs=72.0
Q ss_pred CCCCCCEEEEeCCCCC-CCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcC--CceecCceEEEEecc
Q 005703 63 ADALKKTLQVSNLSPL-LTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALN--NMDVGGRPLNVEMAK 138 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~-vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Ln--g~~l~Gr~L~V~~a~ 138 (682)
...+.++|||+|||+. +|+++|+++|.+||.|..|.|+..+|||||+|.+.++|+.|| .|| +..|.|+.|.|.|+.
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 100 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSE 100 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEEC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECc
Confidence 3556889999999998 999999999999999999999988999999999999999999 675 567999999999997
Q ss_pred cCC
Q 005703 139 SFP 141 (682)
Q Consensus 139 ~~~ 141 (682)
...
T Consensus 101 ~~~ 103 (112)
T 1x4f_A 101 KYK 103 (112)
T ss_dssp SCS
T ss_pred ccc
Confidence 644
No 46
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=7.4e-16 Score=135.31 Aligned_cols=80 Identities=26% Similarity=0.393 Sum_probs=72.8
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEec-----CCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEe
Q 005703 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITD-----SKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEM 136 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~-----~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~ 136 (682)
.....++|||+|||+.+|+++|+++|..||.|..|.|+. .+|||||+|.+.++|+.|| .|||..|.|+.|.|.|
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 445678999999999999999999999999999999973 3589999999999999999 8999999999999999
Q ss_pred cccCCC
Q 005703 137 AKSFPQ 142 (682)
Q Consensus 137 a~~~~~ 142 (682)
+.+...
T Consensus 93 a~~~~~ 98 (100)
T 2do4_A 93 SNSGPS 98 (100)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 987543
No 47
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.65 E-value=5.1e-16 Score=136.34 Aligned_cols=76 Identities=24% Similarity=0.388 Sum_probs=70.6
Q ss_pred CCCCCCEEEEeCCCC-CCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecccC
Q 005703 63 ADALKKTLQVSNLSP-LLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKSF 140 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~-~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~~ 140 (682)
.....++|||+|||+ .+++++|.++|..||.|..|.|. +|||||+|.+.++|+.|| .|||..|+|+.|.|.|+...
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 344689999999998 99999999999999999999996 899999999999999999 79999999999999998754
No 48
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.65 E-value=2.1e-16 Score=142.94 Aligned_cols=75 Identities=20% Similarity=0.231 Sum_probs=70.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCC-CeEEEEEe--cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecccC
Q 005703 66 LKKTLQVSNLSPLLTVEQLRQLFSFCG-TVVECTIT--DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKSF 140 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G-~V~~v~i~--~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~~ 140 (682)
...+|||+|||+.+|+++|+++|..|| +|..|.|. ..+|||||+|.+.++|+.|| .|||..|.|+.|.|.++...
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 468999999999999999999999999 99999996 57899999999999999999 89999999999999998754
No 49
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.5e-16 Score=136.18 Aligned_cols=77 Identities=21% Similarity=0.308 Sum_probs=71.2
Q ss_pred CCCEEEEeCCCCCCCHHHHH----HHHhcCCCeEEEEEec---CCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEec
Q 005703 66 LKKTLQVSNLSPLLTVEQLR----QLFSFCGTVVECTITD---SKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMA 137 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~----~~F~~~G~V~~v~i~~---~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a 137 (682)
..++|||+|||+.+++++|+ ++|.+||.|..|.|+. .+|||||+|.+.++|+.|| .|||..|.|+.|.|.|+
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 46899999999999999999 9999999999999982 2899999999999999999 79999999999999999
Q ss_pred ccCCC
Q 005703 138 KSFPQ 142 (682)
Q Consensus 138 ~~~~~ 142 (682)
.+...
T Consensus 88 ~~~~~ 92 (96)
T 2dgx_A 88 TGASG 92 (96)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 86544
No 50
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.65 E-value=5.1e-16 Score=132.58 Aligned_cols=75 Identities=21% Similarity=0.434 Sum_probs=69.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------c-CCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEec
Q 005703 66 LKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------D-SKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMA 137 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~-~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a 137 (682)
..++|||+|||+.+|+++|.++|..||.|..|.|+ . .+|||||+|.+.++|+.|| .|||..|+|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 46899999999999999999999999999999986 1 6899999999999999999 79999999999999998
Q ss_pred ccC
Q 005703 138 KSF 140 (682)
Q Consensus 138 ~~~ 140 (682)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 51
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.1e-16 Score=135.66 Aligned_cols=79 Identities=27% Similarity=0.394 Sum_probs=72.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEE-EEec------CCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEec
Q 005703 66 LKKTLQVSNLSPLLTVEQLRQLFSFCGTVVEC-TITD------SKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMA 137 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v-~i~~------~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a 137 (682)
..++|||+|||+.+|+++|.++|..||.|..| .|+. .+|||||+|.+.++|+.|| .|||..|.|+.|.|.|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 57899999999999999999999999999999 8862 5799999999999999999 69999999999999999
Q ss_pred ccCCCCC
Q 005703 138 KSFPQKP 144 (682)
Q Consensus 138 ~~~~~~~ 144 (682)
.......
T Consensus 84 ~~~~~~~ 90 (96)
T 1x5t_A 84 FKKDSKG 90 (96)
T ss_dssp CCCCCCC
T ss_pred cccCCCC
Confidence 8765443
No 52
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.2e-16 Score=136.64 Aligned_cols=80 Identities=26% Similarity=0.409 Sum_probs=73.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEec------CCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEe
Q 005703 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITD------SKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEM 136 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~------~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~ 136 (682)
....++|||+|||+.+|+++|+++|..||.|..|.|+. .+|||||+|.+.++|+.|| .|||..|.|+.|.|.|
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 44678999999999999999999999999999999972 5789999999999999999 8999999999999999
Q ss_pred cccCCCC
Q 005703 137 AKSFPQK 143 (682)
Q Consensus 137 a~~~~~~ 143 (682)
+......
T Consensus 89 a~~~~~~ 95 (102)
T 1x5s_A 89 AGKSSDN 95 (102)
T ss_dssp EECCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 53
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.65 E-value=4.5e-16 Score=131.58 Aligned_cols=73 Identities=22% Similarity=0.416 Sum_probs=68.5
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEec------CCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecccC
Q 005703 68 KTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITD------SKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKSF 140 (682)
Q Consensus 68 ~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~------~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~~ 140 (682)
.+|||+|||+.+++++|.++|..||.|..|.|+. .+|||||+|.+.++|+.|| .|||..|.|+.|.|.|+.+.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 5899999999999999999999999999999872 3789999999999999999 79999999999999999864
No 54
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=1e-15 Score=136.71 Aligned_cols=81 Identities=25% Similarity=0.301 Sum_probs=73.9
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcC------CceecC
Q 005703 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALN------NMDVGG 129 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Ln------g~~l~G 129 (682)
.....++|||+|||+.+|+++|+++|..||.|..|.|+ ..+|||||+|.+.++|+.|| .|| |+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 44568899999999999999999999999999999997 36899999999999999999 799 999999
Q ss_pred ceEEEEecccCCCC
Q 005703 130 RPLNVEMAKSFPQK 143 (682)
Q Consensus 130 r~L~V~~a~~~~~~ 143 (682)
+.|.|.|+......
T Consensus 91 ~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 91 RQLKVDLAVTRDEA 104 (111)
T ss_dssp CEEEEECCCCCCCC
T ss_pred EEEEEEECCCCccC
Confidence 99999999876543
No 55
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.9e-16 Score=139.87 Aligned_cols=77 Identities=10% Similarity=0.170 Sum_probs=71.0
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe-----cCCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEec
Q 005703 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT-----DSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEMA 137 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~-----~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~a 137 (682)
.+...++|||+|||+.+|+++|.++|..||.|..|.|+ .++|||||+|.+.++|+.||.+||..|+|+.|.|.|+
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFK 86 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEH
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 34457899999999999999999999999999999997 3689999999999999999999999999999999987
Q ss_pred cc
Q 005703 138 KS 139 (682)
Q Consensus 138 ~~ 139 (682)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 64
No 56
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.65 E-value=1.3e-16 Score=138.68 Aligned_cols=76 Identities=20% Similarity=0.369 Sum_probs=68.4
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCC-CeEEEEEe------cCCCeEEEEeCCHHHHHHHH-Hc-CCceecCceEEEEec
Q 005703 67 KKTLQVSNLSPLLTVEQLRQLFSFCG-TVVECTIT------DSKHFAYIEYSKPEEATAAL-AL-NNMDVGGRPLNVEMA 137 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~~~G-~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~L-ng~~l~Gr~L~V~~a 137 (682)
.++|||+|||+.+|+++|+++|..|| +|..|.|+ .++|||||+|.+.++|+.|| .| ++..|+|+.|.|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 89999986 46799999999999999999 56 567899999999999
Q ss_pred ccCCC
Q 005703 138 KSFPQ 142 (682)
Q Consensus 138 ~~~~~ 142 (682)
.+.+.
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87554
No 57
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.1e-15 Score=137.42 Aligned_cols=80 Identities=28% Similarity=0.402 Sum_probs=72.5
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEec-----CCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEe
Q 005703 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITD-----SKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEM 136 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~-----~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~ 136 (682)
.....++|||+|||+.+|+++|++||..||.|..|.|+. .+|||||+|.+.++|+.|| .|||+.|.|+.|.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 445678999999999999999999999999999999973 3689999999999999999 7999999999999999
Q ss_pred cccCCC
Q 005703 137 AKSFPQ 142 (682)
Q Consensus 137 a~~~~~ 142 (682)
+.....
T Consensus 91 a~~~~~ 96 (114)
T 2do0_A 91 DERALP 96 (114)
T ss_dssp CSCCCC
T ss_pred cccCCC
Confidence 975443
No 58
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.64 E-value=6e-16 Score=135.02 Aligned_cols=75 Identities=25% Similarity=0.376 Sum_probs=70.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEeccc
Q 005703 67 KKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKS 139 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~ 139 (682)
.++|||+|||..+++++|.++|..||.|..|.|+ ..+|||||+|.+.++|+.|| .|||..|+|+.|.|.|+..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 6799999999999999999999999999999997 24799999999999999999 8999999999999999986
Q ss_pred CC
Q 005703 140 FP 141 (682)
Q Consensus 140 ~~ 141 (682)
..
T Consensus 82 ~~ 83 (96)
T 2x1f_A 82 SD 83 (96)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 59
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.8e-16 Score=140.02 Aligned_cols=79 Identities=28% Similarity=0.433 Sum_probs=72.7
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe----cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEe
Q 005703 62 KADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT----DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEM 136 (682)
Q Consensus 62 ~~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~----~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~ 136 (682)
......++|||+|||..+|+++|+++|..||.|..|.|+ ..+|||||+|.+.++|+.|| .|||..|+|+.|.|.+
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345568999999999999999999999999999999997 34899999999999999999 7999999999999999
Q ss_pred cccC
Q 005703 137 AKSF 140 (682)
Q Consensus 137 a~~~ 140 (682)
+...
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8764
No 60
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5.3e-16 Score=134.56 Aligned_cols=77 Identities=29% Similarity=0.418 Sum_probs=70.7
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEE
Q 005703 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVE 135 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~ 135 (682)
.....++|||+|||+.+|+++|+++|..||.|..|.|+ ..+|||||+|.+.++|+.|| .|||..|.|+.|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999997 24689999999999999999 799999999999999
Q ss_pred eccc
Q 005703 136 MAKS 139 (682)
Q Consensus 136 ~a~~ 139 (682)
|++.
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9874
No 61
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.5e-16 Score=138.05 Aligned_cols=78 Identities=24% Similarity=0.317 Sum_probs=71.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEe
Q 005703 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEM 136 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~ 136 (682)
....++|||+|||+.+|+++|.++|..||.|..|.|+ ..+|||||+|.+.++|+.|| .|||..|.|+.|.|.|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 3457899999999999999999999999999999997 23689999999999999999 7999999999999999
Q ss_pred cccCC
Q 005703 137 AKSFP 141 (682)
Q Consensus 137 a~~~~ 141 (682)
+....
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98754
No 62
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.64 E-value=4.9e-16 Score=140.62 Aligned_cols=77 Identities=26% Similarity=0.418 Sum_probs=70.4
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEE
Q 005703 62 KADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNV 134 (682)
Q Consensus 62 ~~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V 134 (682)
......++|||+|||+.+|+++|+++|..||.|..|.|+ ..+|||||+|.+.++|+.|| .|||..|+|+.|.|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 345567899999999999999999999999999999997 34799999999999999999 79999999999999
Q ss_pred Eecc
Q 005703 135 EMAK 138 (682)
Q Consensus 135 ~~a~ 138 (682)
.|++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9974
No 63
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.64 E-value=9e-16 Score=139.30 Aligned_cols=79 Identities=24% Similarity=0.388 Sum_probs=72.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEec-----CCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEec
Q 005703 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITD-----SKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMA 137 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~-----~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a 137 (682)
....++|||+|||+.+|+++|.++|..||.|..|.|+. .+|||||+|.+.++|+.|| .|||..|.|+.|.|.|+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 34578999999999999999999999999999999983 4699999999999999999 79999999999999999
Q ss_pred ccCCC
Q 005703 138 KSFPQ 142 (682)
Q Consensus 138 ~~~~~ 142 (682)
.....
T Consensus 84 ~~~~~ 88 (116)
T 2fy1_A 84 KKPSF 88 (116)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 86543
No 64
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=5.4e-16 Score=135.71 Aligned_cols=78 Identities=23% Similarity=0.365 Sum_probs=70.4
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe--cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEeccc
Q 005703 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT--DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKS 139 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~--~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~ 139 (682)
.....++|||+|||+.+|+++|+++|..||.|. |.|+ ..+|||||+|.+.++|+.|| .|||..|+|+.|.|.|+.+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 345578999999999999999999999999996 5554 67899999999999999999 8999999999999999986
Q ss_pred CC
Q 005703 140 FP 141 (682)
Q Consensus 140 ~~ 141 (682)
..
T Consensus 94 ~~ 95 (97)
T 2e5j_A 94 QR 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 65
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.64 E-value=6.5e-16 Score=138.03 Aligned_cols=79 Identities=22% Similarity=0.274 Sum_probs=72.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEe
Q 005703 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEM 136 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~ 136 (682)
....++|||+|||+.+|+++|+++|..||.|..|.|+ ..+|||||+|.+.++|+.|| .|||..|.|+.|.|.|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4457899999999999999999999999999999997 24799999999999999999 7999999999999999
Q ss_pred cccCCC
Q 005703 137 AKSFPQ 142 (682)
Q Consensus 137 a~~~~~ 142 (682)
+.....
T Consensus 103 a~~~~~ 108 (110)
T 1oo0_B 103 CFVKGP 108 (110)
T ss_dssp SEESSC
T ss_pred cccCCC
Confidence 987543
No 66
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.64 E-value=7.7e-16 Score=136.51 Aligned_cols=82 Identities=27% Similarity=0.324 Sum_probs=73.8
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCcee---cCce
Q 005703 62 KADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDV---GGRP 131 (682)
Q Consensus 62 ~~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l---~Gr~ 131 (682)
..+...++|||+|||+.+|+++|+++|..||.|..|.|+ ..+|||||+|.+.++|+.|| .|||..| .|+.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 345568999999999999999999999999999999997 25799999999999999999 7999988 8999
Q ss_pred EEEEecccCCCC
Q 005703 132 LNVEMAKSFPQK 143 (682)
Q Consensus 132 L~V~~a~~~~~~ 143 (682)
|.|.|+......
T Consensus 88 l~v~~a~~~~~~ 99 (106)
T 2dgp_A 88 IQVKPADSESRG 99 (106)
T ss_dssp CEEEECCCCSCC
T ss_pred EEEEECCccccc
Confidence 999999876543
No 67
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.64 E-value=5.7e-16 Score=132.41 Aligned_cols=75 Identities=24% Similarity=0.389 Sum_probs=69.0
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEe
Q 005703 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEM 136 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~ 136 (682)
.+...++|||+|||+.+|+++|+++|.+||.|..|.|+ ..+|||||+|.+.++|+.||.++|..|+|+.|.|.+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKK 86 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEe
Confidence 45568999999999999999999999999999999997 236899999999999999998899999999999988
Q ss_pred c
Q 005703 137 A 137 (682)
Q Consensus 137 a 137 (682)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 6
No 68
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.64 E-value=5.1e-16 Score=133.97 Aligned_cols=78 Identities=27% Similarity=0.389 Sum_probs=72.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEec----CCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEeccc
Q 005703 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITD----SKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKS 139 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~----~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~ 139 (682)
...++|||+|||+.+++++|+++|..||.|..|.|+. .+|||||+|.+.++|+.|| .|||..|.|+.|.|.|+..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 4578999999999999999999999999999999973 5799999999999999999 7999999999999999987
Q ss_pred CCC
Q 005703 140 FPQ 142 (682)
Q Consensus 140 ~~~ 142 (682)
...
T Consensus 86 ~~~ 88 (92)
T 2dgv_A 86 ASG 88 (92)
T ss_dssp CSS
T ss_pred CCC
Confidence 543
No 69
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.3e-15 Score=131.67 Aligned_cols=79 Identities=29% Similarity=0.382 Sum_probs=72.7
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecccCC
Q 005703 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKSFP 141 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~~~ 141 (682)
.....++|||+|| .+|+++|+++|.+||.|..|.|...+|||||+|.+.++|+.|| .|||..|.|+.|.|.|+....
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 88 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 3456789999997 8999999999999999999999988999999999999999999 899999999999999998765
Q ss_pred CC
Q 005703 142 QK 143 (682)
Q Consensus 142 ~~ 143 (682)
..
T Consensus 89 ~~ 90 (97)
T 1x5p_A 89 ML 90 (97)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 70
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.64 E-value=7e-16 Score=138.26 Aligned_cols=81 Identities=30% Similarity=0.413 Sum_probs=73.4
Q ss_pred cCCCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceE
Q 005703 60 AGKADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPL 132 (682)
Q Consensus 60 ~~~~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L 132 (682)
........++|||+|||+.+|+++|+++|..||.|..|.|+ ..+|||||+|.+.++|+.|| .|||..|.|+.|
T Consensus 19 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 98 (108)
T 2jrs_A 19 LQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 98 (108)
T ss_dssp SCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred cccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34456678999999999999999999999999999999997 24689999999999999999 799999999999
Q ss_pred EEEecccC
Q 005703 133 NVEMAKSF 140 (682)
Q Consensus 133 ~V~~a~~~ 140 (682)
.|.++...
T Consensus 99 ~V~~a~~k 106 (108)
T 2jrs_A 99 KVGHVTER 106 (108)
T ss_dssp EEECSCSS
T ss_pred EEEEcccC
Confidence 99998764
No 71
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.1e-15 Score=136.09 Aligned_cols=80 Identities=23% Similarity=0.271 Sum_probs=72.3
Q ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEE
Q 005703 61 GKADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLN 133 (682)
Q Consensus 61 ~~~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~ 133 (682)
...+...++|||+|||+.+|+++|+++|..||.|..|.|+ ..+|||||+|.+.++|+.|| .||+ .|.|+.|.
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 3456678999999999999999999999999999999997 25789999999999999999 7888 89999999
Q ss_pred EEecccCC
Q 005703 134 VEMAKSFP 141 (682)
Q Consensus 134 V~~a~~~~ 141 (682)
|.|+....
T Consensus 90 V~~a~~~~ 97 (116)
T 2cqd_A 90 VNLAYLGA 97 (116)
T ss_dssp EEESTTTC
T ss_pred EEEcccCC
Confidence 99997643
No 72
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=8.8e-16 Score=137.85 Aligned_cols=82 Identities=28% Similarity=0.428 Sum_probs=73.6
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeE--------EEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCce
Q 005703 62 KADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVV--------ECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMD 126 (682)
Q Consensus 62 ~~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~--------~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~ 126 (682)
......++|||+|||+.+|+++|+++|..||.|. .|.|+ ..+|||||+|.+.++|+.|| .|||+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3556789999999999999999999999999998 58886 34789999999999999999 799999
Q ss_pred ecCceEEEEecccCCCC
Q 005703 127 VGGRPLNVEMAKSFPQK 143 (682)
Q Consensus 127 l~Gr~L~V~~a~~~~~~ 143 (682)
|.|+.|.|.|+......
T Consensus 90 ~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPPM 106 (113)
T ss_dssp ETTEECEEECSSCCCCS
T ss_pred cCCCEEEEEECCCCCCC
Confidence 99999999999876543
No 73
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.63 E-value=4.6e-16 Score=135.11 Aligned_cols=77 Identities=31% Similarity=0.509 Sum_probs=70.5
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEec-----CCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEe
Q 005703 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITD-----SKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEM 136 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~-----~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~ 136 (682)
.+...++|||+|||+.+++++|+++|..||.|..|.|+. .+|||||+|.+.++|+.|| .|||..|.|+.|.|.|
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 344578999999999999999999999999999999972 3689999999999999999 7999999999999999
Q ss_pred ccc
Q 005703 137 AKS 139 (682)
Q Consensus 137 a~~ 139 (682)
+..
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 864
No 74
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4e-16 Score=135.22 Aligned_cols=79 Identities=24% Similarity=0.391 Sum_probs=70.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCC-eEEEEEecCCCeEEEEeCCHHHHHHHH-HcCC-ceecCceEEEEecccCC
Q 005703 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGT-VVECTITDSKHFAYIEYSKPEEATAAL-ALNN-MDVGGRPLNVEMAKSFP 141 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~-V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng-~~l~Gr~L~V~~a~~~~ 141 (682)
...++|||+|||+.+|+++|+++|.+||. |..+.| ..+|||||+|.+.++|+.|| .||| +.|+|+.|.|.|+....
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKK 84 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCcc
Confidence 45789999999999999999999999999 555555 46899999999999999999 7999 99999999999998765
Q ss_pred CCC
Q 005703 142 QKP 144 (682)
Q Consensus 142 ~~~ 144 (682)
...
T Consensus 85 ~~~ 87 (93)
T 2cqh_A 85 LRS 87 (93)
T ss_dssp CCC
T ss_pred ccC
Confidence 443
No 75
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.63 E-value=5.8e-16 Score=135.37 Aligned_cols=77 Identities=23% Similarity=0.358 Sum_probs=70.9
Q ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecccCC
Q 005703 64 DALKKTLQVSNLSP-LLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKSFP 141 (682)
Q Consensus 64 ~~~~~tL~V~NLp~-~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~~~ 141 (682)
..+.++|||+|||+ .+|+++|.++|..||.|..|.|. +|||||+|.+.++|+.|| .|||..|.|+.|.|.|+....
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 34588999999998 99999999999999999999997 899999999999999999 799999999999999998654
Q ss_pred C
Q 005703 142 Q 142 (682)
Q Consensus 142 ~ 142 (682)
.
T Consensus 85 ~ 85 (96)
T 2kvi_A 85 R 85 (96)
T ss_dssp C
T ss_pred C
Confidence 4
No 76
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.63 E-value=8.9e-16 Score=140.51 Aligned_cols=80 Identities=24% Similarity=0.306 Sum_probs=72.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEe
Q 005703 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEM 136 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~ 136 (682)
....++|||+|||+.+|+++|+++|..||.|..|.|+ ..+|||||+|.+.++|+.|| .|||..|.|+.|.|.|
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 3457899999999999999999999999999999997 24899999999999999999 7999999999999999
Q ss_pred cccCCCC
Q 005703 137 AKSFPQK 143 (682)
Q Consensus 137 a~~~~~~ 143 (682)
+......
T Consensus 99 a~~~~~~ 105 (126)
T 3ex7_B 99 CFVRGPP 105 (126)
T ss_dssp SEESSSC
T ss_pred ecCCCCC
Confidence 9876544
No 77
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.1e-15 Score=136.10 Aligned_cols=79 Identities=16% Similarity=0.255 Sum_probs=72.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCC-eEEEEEe-------cCCCeEEEEeCCHHHHHHHH-HcC--CceecCceEE
Q 005703 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGT-VVECTIT-------DSKHFAYIEYSKPEEATAAL-ALN--NMDVGGRPLN 133 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~-V~~v~i~-------~~kg~aFVeF~s~e~A~~Al-~Ln--g~~l~Gr~L~ 133 (682)
...++|||+|||+.+|+++|.++|..||. |..|.|+ ..+|||||+|.+.++|+.|| .|| ++.|.|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35789999999999999999999999998 9999997 57899999999999999999 796 5999999999
Q ss_pred EEecccCCCC
Q 005703 134 VEMAKSFPQK 143 (682)
Q Consensus 134 V~~a~~~~~~ 143 (682)
|.|+.+....
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999876544
No 78
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.63 E-value=2.7e-16 Score=138.78 Aligned_cols=75 Identities=19% Similarity=0.258 Sum_probs=70.0
Q ss_pred CCCCEEEEeCCCC------CCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecC-c
Q 005703 65 ALKKTLQVSNLSP------LLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGG-R 130 (682)
Q Consensus 65 ~~~~tL~V~NLp~------~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~G-r 130 (682)
...++|||+|||+ .+++++|.++|.+||.|..|.|+ .++|||||+|.+.++|+.|| .|||+.|.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3478999999999 99999999999999999999987 36799999999999999999 899999999 9
Q ss_pred eEEEEeccc
Q 005703 131 PLNVEMAKS 139 (682)
Q Consensus 131 ~L~V~~a~~ 139 (682)
.|.|.++.+
T Consensus 84 ~l~V~~a~~ 92 (100)
T 3ns6_A 84 RLFLYTMKD 92 (100)
T ss_dssp BCEEEESHH
T ss_pred EEEEEECch
Confidence 999999875
No 79
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.63 E-value=3.2e-16 Score=137.72 Aligned_cols=76 Identities=22% Similarity=0.425 Sum_probs=68.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCC--eEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCc----eecCc
Q 005703 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGT--VVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNM----DVGGR 130 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~~G~--V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~----~l~Gr 130 (682)
...-.||||+|||+.+|+++|.++|.+||. |..|.|+ .++|||||+|.+.++|+.|| .|||. .|+|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 445789999999999999999999999995 5688876 36899999999999999999 89996 59999
Q ss_pred eEEEEeccc
Q 005703 131 PLNVEMAKS 139 (682)
Q Consensus 131 ~L~V~~a~~ 139 (682)
.|.|.||+.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999874
No 80
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=1.6e-15 Score=134.06 Aligned_cols=80 Identities=21% Similarity=0.297 Sum_probs=72.0
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEe
Q 005703 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEM 136 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~ 136 (682)
.....++|||+|||+.+|+++|+++|..|| |..|.|+ ..+|||||+|.+.++|+.||.|||..|.|+.|.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDI 89 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEE
Confidence 344578999999999999999999999997 9999997 246899999999999999999999999999999999
Q ss_pred cccCCCC
Q 005703 137 AKSFPQK 143 (682)
Q Consensus 137 a~~~~~~ 143 (682)
+......
T Consensus 90 a~~~~~~ 96 (103)
T 2dng_A 90 AEGRKQD 96 (103)
T ss_dssp CCCCCCC
T ss_pred ecCCCCC
Confidence 9876543
No 81
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.62 E-value=1.8e-15 Score=140.76 Aligned_cols=85 Identities=25% Similarity=0.425 Sum_probs=76.0
Q ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEE
Q 005703 61 GKADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLN 133 (682)
Q Consensus 61 ~~~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~ 133 (682)
...+...++|||+|||..+|+++|+++|..||.|..|.|+ ..+|||||+|.+.++|+.|| .|||..|.|+.|.
T Consensus 36 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 36 NPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp SCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3455668999999999999999999999999999999997 24789999999999999999 7999999999999
Q ss_pred EEecccCCCCCC
Q 005703 134 VEMAKSFPQKPS 145 (682)
Q Consensus 134 V~~a~~~~~~~~ 145 (682)
|.|+........
T Consensus 116 v~~a~~~~~~~~ 127 (139)
T 1u6f_A 116 VALAASGHQRPG 127 (139)
T ss_dssp EEESSCCCCCCC
T ss_pred EEECCCCCCCCC
Confidence 999987765543
No 82
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=141.39 Aligned_cols=76 Identities=24% Similarity=0.413 Sum_probs=70.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHH----HHHhcCCCeEEEEEe---cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEe
Q 005703 65 ALKKTLQVSNLSPLLTVEQLR----QLFSFCGTVVECTIT---DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEM 136 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~----~~F~~~G~V~~v~i~---~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~ 136 (682)
.+.++|||+|||+.+++++|+ ++|++||.|+.|.|. ..+|||||+|.+.++|+.|| .|||..|.|+.|.|.|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~ 106 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITF 106 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEE
Confidence 457899999999999999876 799999999999886 57899999999999999999 8999999999999999
Q ss_pred cccC
Q 005703 137 AKSF 140 (682)
Q Consensus 137 a~~~ 140 (682)
+...
T Consensus 107 a~~~ 110 (127)
T 2a3j_A 107 SETP 110 (127)
T ss_dssp CCCC
T ss_pred ccCc
Confidence 9864
No 83
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.62 E-value=1e-15 Score=133.33 Aligned_cols=78 Identities=19% Similarity=0.401 Sum_probs=71.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHH----HHHhcCCCeEEEEEe---cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEE
Q 005703 64 DALKKTLQVSNLSPLLTVEQLR----QLFSFCGTVVECTIT---DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVE 135 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~----~~F~~~G~V~~v~i~---~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~ 135 (682)
..+.++|||+|||+.+++++|+ ++|.+||.|..|.|. ..+|||||+|.+.++|+.|| .|||..|.|+.|.|.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3467899999999999999999 999999999999997 56899999999999999999 799999999999999
Q ss_pred ecccCC
Q 005703 136 MAKSFP 141 (682)
Q Consensus 136 ~a~~~~ 141 (682)
|+....
T Consensus 85 ~a~~~~ 90 (97)
T 1nu4_A 85 YAKTDS 90 (97)
T ss_dssp ECSSCC
T ss_pred EccCCC
Confidence 998643
No 84
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.9e-16 Score=139.85 Aligned_cols=77 Identities=23% Similarity=0.366 Sum_probs=71.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEec
Q 005703 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEMA 137 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~a 137 (682)
+...++|||+|||+.+|+++|++||..||.|..|.|+ ..+|||||+|.+.++|+.||.|||+.|.|+.|.|.|+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEH
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEec
Confidence 3446899999999999999999999999999999997 3579999999999999999999999999999999998
Q ss_pred ccC
Q 005703 138 KSF 140 (682)
Q Consensus 138 ~~~ 140 (682)
...
T Consensus 102 ~~~ 104 (114)
T 2cq4_A 102 QAE 104 (114)
T ss_dssp HHH
T ss_pred CCC
Confidence 754
No 85
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.62 E-value=1e-15 Score=135.94 Aligned_cols=74 Identities=24% Similarity=0.403 Sum_probs=69.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe-----cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecc
Q 005703 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT-----DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAK 138 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~-----~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~ 138 (682)
...++|||+|||+.+|+++|+++|..||.|..|.|+ ..+|||||+|.+.++|+.|| .|||..|.|+.|.|.|+.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 457899999999999999999999999999999997 35789999999999999999 799999999999999985
No 86
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.62 E-value=1.3e-15 Score=130.52 Aligned_cols=74 Identities=34% Similarity=0.475 Sum_probs=69.4
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEecccC
Q 005703 67 KKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEMAKSF 140 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~a~~~ 140 (682)
.++|||+|||+.+|+++|+++|..||.|..|.|+ ..+|||||+|.+.++|+.||.|||..|.|+.|.|.++...
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccCC
Confidence 5799999999999999999999999999999987 2478999999999999999999999999999999998763
No 87
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=5.6e-16 Score=139.30 Aligned_cols=79 Identities=25% Similarity=0.360 Sum_probs=71.7
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHH---HHHhcCCCeEEEEEec---------CCCeEEEEeCCHHHHHHHH-HcCCceecC
Q 005703 63 ADALKKTLQVSNLSPLLTVEQLR---QLFSFCGTVVECTITD---------SKHFAYIEYSKPEEATAAL-ALNNMDVGG 129 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~---~~F~~~G~V~~v~i~~---------~kg~aFVeF~s~e~A~~Al-~Lng~~l~G 129 (682)
.....++|||+|||+.+++++|. ++|.+||.|..|.|+. .+|||||+|.+.++|+.|| .|||..|+|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34457899999999999999999 9999999999999972 2379999999999999999 799999999
Q ss_pred ceEEEEecccCC
Q 005703 130 RPLNVEMAKSFP 141 (682)
Q Consensus 130 r~L~V~~a~~~~ 141 (682)
+.|.|.|+.+..
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999998765
No 88
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.62 E-value=1.9e-16 Score=136.77 Aligned_cols=75 Identities=20% Similarity=0.242 Sum_probs=63.8
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCC--CeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecc
Q 005703 68 KTLQVSNLSPLLTVEQLRQLFSFCG--TVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAK 138 (682)
Q Consensus 68 ~tL~V~NLp~~vteedL~~~F~~~G--~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~ 138 (682)
.+|||+|||+.+|+++|+++|..|| .|..|.|+ .++|||||+|.+.++|+.|| .|||..|.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999987 34689999999999999999 899999999999999988
Q ss_pred cCCC
Q 005703 139 SFPQ 142 (682)
Q Consensus 139 ~~~~ 142 (682)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 6543
No 89
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.62 E-value=1.4e-15 Score=144.56 Aligned_cols=80 Identities=26% Similarity=0.349 Sum_probs=72.7
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEE
Q 005703 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVE 135 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~ 135 (682)
.....++|||+|||+.+|+++|+++|..||.|..|.|+ ..+|||||+|.+.++|+.|| .|||+.|.|+.|.|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567999999999999999999999999999999996 24689999999999999999 799999999999999
Q ss_pred ecccCCC
Q 005703 136 MAKSFPQ 142 (682)
Q Consensus 136 ~a~~~~~ 142 (682)
|+.+...
T Consensus 115 ~a~~~~~ 121 (156)
T 1h2v_Z 115 WDAGFKE 121 (156)
T ss_dssp EESCCCT
T ss_pred ECCCCCC
Confidence 9986543
No 90
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.7e-15 Score=134.08 Aligned_cols=79 Identities=23% Similarity=0.350 Sum_probs=72.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe-------cCCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEe
Q 005703 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT-------DSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEM 136 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~-------~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~ 136 (682)
....++|||+|||+.+|+++|+++|..|| |..|.|+ ..+|||||+|.+.++|+.||.|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEE
Confidence 34578999999999999999999999999 9999997 237899999999999999999999999999999999
Q ss_pred cccCCCC
Q 005703 137 AKSFPQK 143 (682)
Q Consensus 137 a~~~~~~ 143 (682)
+......
T Consensus 91 a~~~~~~ 97 (104)
T 1wi8_A 91 ADQAQDK 97 (104)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9876544
No 91
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.62 E-value=1e-15 Score=141.70 Aligned_cols=79 Identities=27% Similarity=0.413 Sum_probs=72.6
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEE
Q 005703 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVE 135 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~ 135 (682)
...+.++|||+|||+.+|+++|+++|..||.|..|.|+ ..+|||||+|.+.++|+.|| .|||..|.|+.|.|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999997 35799999999999999999 799999999999999
Q ss_pred ecccCC
Q 005703 136 MAKSFP 141 (682)
Q Consensus 136 ~a~~~~ 141 (682)
|+....
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 987643
No 92
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.62 E-value=1.7e-15 Score=135.82 Aligned_cols=81 Identities=20% Similarity=0.316 Sum_probs=69.3
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEe
Q 005703 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEM 136 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~ 136 (682)
.....++|||+|||+.+|+++|.++|..||.|..|.|+ ..+|||||+|.+.++|+.||.++|..|+|+.|.|.+
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKV 100 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEE
Confidence 44567899999999999999999999999999999997 247999999999999999996557999999999999
Q ss_pred cccCCCC
Q 005703 137 AKSFPQK 143 (682)
Q Consensus 137 a~~~~~~ 143 (682)
+......
T Consensus 101 a~~~~~~ 107 (109)
T 2rs2_A 101 AFPRRAQ 107 (109)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9876543
No 93
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.62 E-value=1.4e-15 Score=133.36 Aligned_cols=75 Identities=23% Similarity=0.371 Sum_probs=69.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEE--------EEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceec
Q 005703 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVE--------CTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVG 128 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~--------v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~ 128 (682)
....++|||+|||+.+|+++|+++|..||.|.. |.|+ ..+|||||+|.+.++|+.|| .|||..|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 446899999999999999999999999999999 8886 23689999999999999999 79999999
Q ss_pred CceEEEEecc
Q 005703 129 GRPLNVEMAK 138 (682)
Q Consensus 129 Gr~L~V~~a~ 138 (682)
|+.|.|.+|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999974
No 94
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.61 E-value=1.6e-15 Score=136.50 Aligned_cols=77 Identities=22% Similarity=0.347 Sum_probs=71.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe---cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecccC
Q 005703 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT---DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKSF 140 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~---~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~~ 140 (682)
...++|||+|||+.+|+++|.++|..||.|..|.|+ ..+|||||+|.+.++|+.|| .|||..|+|+.|.|.|+.+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNAN 85 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 357899999999999999999999999999999996 46799999999999999999 79999999999999999864
Q ss_pred C
Q 005703 141 P 141 (682)
Q Consensus 141 ~ 141 (682)
.
T Consensus 86 ~ 86 (115)
T 3lqv_A 86 R 86 (115)
T ss_dssp H
T ss_pred h
Confidence 3
No 95
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.61 E-value=1.6e-15 Score=134.95 Aligned_cols=78 Identities=19% Similarity=0.406 Sum_probs=71.4
Q ss_pred CCCCCCEEEEeCCCCCC------CHHHHHHHHhcCCCeEEEEEe----cCCCeEEEEeCCHHHHHHHH-HcCCceecCc-
Q 005703 63 ADALKKTLQVSNLSPLL------TVEQLRQLFSFCGTVVECTIT----DSKHFAYIEYSKPEEATAAL-ALNNMDVGGR- 130 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~v------teedL~~~F~~~G~V~~v~i~----~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr- 130 (682)
.+...++|||+|||+.+ |+++|.++|.+||.|..|.|+ .++|||||+|.+.++|+.|| .|||..|.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 34457899999999999 889999999999999999997 46899999999999999999 7999999998
Q ss_pred eEEEEecccC
Q 005703 131 PLNVEMAKSF 140 (682)
Q Consensus 131 ~L~V~~a~~~ 140 (682)
.|.|.|+...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999998754
No 96
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.61 E-value=1.8e-15 Score=135.46 Aligned_cols=74 Identities=26% Similarity=0.499 Sum_probs=69.6
Q ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecccC
Q 005703 65 ALKKTLQVSNLSPL-LTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKSF 140 (682)
Q Consensus 65 ~~~~tL~V~NLp~~-vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~~ 140 (682)
...++|||+|||+. +|+++|+++|.+||.|..|.|. +|||||+|.+.++|+.|| .|||..|+|+.|.|.|+...
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVH--KGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEE--TTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 34689999999999 9999999999999999999994 899999999999999999 89999999999999999754
No 97
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.5e-15 Score=134.24 Aligned_cols=80 Identities=18% Similarity=0.288 Sum_probs=72.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhc-CCCeEEEEEec-----CCCeEEEEeCCHHHHHHHH-HcCCce-ecCceEEEE
Q 005703 64 DALKKTLQVSNLSPLLTVEQLRQLFSF-CGTVVECTITD-----SKHFAYIEYSKPEEATAAL-ALNNMD-VGGRPLNVE 135 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~-~G~V~~v~i~~-----~kg~aFVeF~s~e~A~~Al-~Lng~~-l~Gr~L~V~ 135 (682)
....++|||+|||+.+|+++|+++|.. ||.|..|.|+. .+|||||+|.+.++|+.|| .|||.. |.|+.|.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 446789999999999999999999999 99999999972 5789999999999999999 799999 999999999
Q ss_pred ecccCCCC
Q 005703 136 MAKSFPQK 143 (682)
Q Consensus 136 ~a~~~~~~ 143 (682)
|+......
T Consensus 86 ~a~~~~~~ 93 (104)
T 2dhg_A 86 VAIPKASR 93 (104)
T ss_dssp BCCCCCSC
T ss_pred EccCCCcC
Confidence 99765543
No 98
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.6e-15 Score=132.81 Aligned_cols=78 Identities=17% Similarity=0.348 Sum_probs=70.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeE-EEEEec------CCCeEEEEeCCHHHHHHHH-HcCCceecCce----
Q 005703 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGTVV-ECTITD------SKHFAYIEYSKPEEATAAL-ALNNMDVGGRP---- 131 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~-~v~i~~------~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~---- 131 (682)
....++|||+|||+.+++++|+++|..||.|. .|.|+. .+|||||+|.+.++|+.|| .|||..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34579999999999999999999999999999 999872 4589999999999999999 69999999999
Q ss_pred EEEEecccCC
Q 005703 132 LNVEMAKSFP 141 (682)
Q Consensus 132 L~V~~a~~~~ 141 (682)
|.|.|+....
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999998643
No 99
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=1e-15 Score=134.72 Aligned_cols=75 Identities=25% Similarity=0.468 Sum_probs=70.4
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEec-CCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecccCCC
Q 005703 68 KTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITD-SKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKSFPQ 142 (682)
Q Consensus 68 ~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~-~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~~~~ 142 (682)
++|||+|||+.+|+++|+++|..||.|..|.|+. .+|||||+|.+.++|+.|| .|||..|.|+.|.|.|+.....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 5899999999999999999999999999999985 4999999999999999999 7999999999999999987653
No 100
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=9.1e-16 Score=134.10 Aligned_cols=78 Identities=17% Similarity=0.259 Sum_probs=69.7
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEE
Q 005703 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVE 135 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~ 135 (682)
.....++|||+|||+.+++++|+++|..||.|..|.|+ ..+|||||+|.+.++|+.|| .|||..|.|+.|.|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34557899999999999999999999999999866554 24799999999999999999 899999999999999
Q ss_pred ecccC
Q 005703 136 MAKSF 140 (682)
Q Consensus 136 ~a~~~ 140 (682)
++...
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98753
No 101
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.60 E-value=7.8e-16 Score=127.84 Aligned_cols=69 Identities=16% Similarity=0.327 Sum_probs=64.9
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEec
Q 005703 69 TLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEMA 137 (682)
Q Consensus 69 tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~a 137 (682)
+|||+|||+.+|+++|+++|.+||.|..|.|+ ..+|||||+|.+.++|+.||.|||..|+|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999986 2468999999999999999999999999999999875
No 102
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=5e-15 Score=130.71 Aligned_cols=82 Identities=21% Similarity=0.303 Sum_probs=72.2
Q ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEec------CCCeEEEEeCCHHHHHHHHHcCCceecCceEEE
Q 005703 61 GKADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITD------SKHFAYIEYSKPEEATAALALNNMDVGGRPLNV 134 (682)
Q Consensus 61 ~~~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~------~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V 134 (682)
.......++|||+|||+.+++++|+++|..||.|..|.|+. .+|||||+|.+.++|+.||. +++.|+|+.|.|
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v 87 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDC 87 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEE
Confidence 34556688999999999999999999999999999999972 36899999999999999996 478999999999
Q ss_pred EecccCCCC
Q 005703 135 EMAKSFPQK 143 (682)
Q Consensus 135 ~~a~~~~~~ 143 (682)
.|+......
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cqg_A 88 KLPNSKQSQ 96 (103)
T ss_dssp ECCCTTCCC
T ss_pred EecCCCCcC
Confidence 999876543
No 103
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.60 E-value=3.6e-15 Score=136.28 Aligned_cols=81 Identities=21% Similarity=0.309 Sum_probs=73.6
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEec-----CCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEec
Q 005703 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITD-----SKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMA 137 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~-----~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a 137 (682)
....++|||+|||+.+++++|+++|..||.|..|.|+. .+|||||+|.+.++|+.|| .|||..|.|+.|.|.|+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 34578999999999999999999999999999999972 6799999999999999999 79999999999999999
Q ss_pred ccCCCCC
Q 005703 138 KSFPQKP 144 (682)
Q Consensus 138 ~~~~~~~ 144 (682)
......+
T Consensus 112 ~~~~~~~ 118 (124)
T 2kt5_A 112 ASQIDLE 118 (124)
T ss_dssp CCTTCCC
T ss_pred CCCCCCC
Confidence 8765443
No 104
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.60 E-value=2.8e-15 Score=141.57 Aligned_cols=79 Identities=22% Similarity=0.389 Sum_probs=73.2
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe-cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEeccc
Q 005703 62 KADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT-DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKS 139 (682)
Q Consensus 62 ~~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~-~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~ 139 (682)
......++|||+|||+.+|+++|.++|..||.|..|.|+ ..+|||||+|.+.++|..|| .|||..|+|+.|.|.|+.+
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 445567999999999999999999999999999999998 45999999999999999999 7999999999999999976
Q ss_pred C
Q 005703 140 F 140 (682)
Q Consensus 140 ~ 140 (682)
.
T Consensus 148 ~ 148 (150)
T 2i2y_A 148 E 148 (150)
T ss_dssp C
T ss_pred C
Confidence 4
No 105
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.4e-15 Score=134.74 Aligned_cols=83 Identities=27% Similarity=0.399 Sum_probs=73.6
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEec------CCCeEEEEeCCHHHHHHHHHcCCceecCceEEEE
Q 005703 62 KADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITD------SKHFAYIEYSKPEEATAALALNNMDVGGRPLNVE 135 (682)
Q Consensus 62 ~~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~------~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~ 135 (682)
..+...++|||+|||+.+|+++|+++|..||.|..|.|+. .+|||||+|.+.++|+.||.+||+.|.|+.|.|.
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPK 90 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEE
Confidence 3456789999999999999999999999999999999972 3589999999999999999449999999999999
Q ss_pred ecccCCCCC
Q 005703 136 MAKSFPQKP 144 (682)
Q Consensus 136 ~a~~~~~~~ 144 (682)
++.+....+
T Consensus 91 ~a~~~~~~~ 99 (105)
T 2dh8_A 91 PCTPRGMQP 99 (105)
T ss_dssp CSCCSSCCT
T ss_pred EccCCCCCC
Confidence 998765443
No 106
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.2e-15 Score=135.57 Aligned_cols=81 Identities=27% Similarity=0.349 Sum_probs=72.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCe----EEEEEe--cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEe
Q 005703 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGTV----VECTIT--DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEM 136 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~~G~V----~~v~i~--~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~ 136 (682)
..+.++|||+|||+.+|+++|.++|..||.| ..+.+. ..+|||||+|.+.++|+.|| .|||..|.|+.|.|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3457899999999999999999999999998 566665 56799999999999999999 7999999999999999
Q ss_pred cccCCCCC
Q 005703 137 AKSFPQKP 144 (682)
Q Consensus 137 a~~~~~~~ 144 (682)
+.......
T Consensus 102 a~~~~~~~ 109 (115)
T 2cpx_A 102 GKNKKQRS 109 (115)
T ss_dssp CCCCSCCC
T ss_pred ccCCCCCC
Confidence 98765543
No 107
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.3e-15 Score=136.58 Aligned_cols=79 Identities=22% Similarity=0.321 Sum_probs=72.1
Q ss_pred CCCCEEEE--eCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCcee-----cCceEEEEe
Q 005703 65 ALKKTLQV--SNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDV-----GGRPLNVEM 136 (682)
Q Consensus 65 ~~~~tL~V--~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l-----~Gr~L~V~~ 136 (682)
.+.++||| |||++.+|+++|+++|.+||+|..|.|+..+|||||+|.+.++|+.|| .|||.+| .|..|.|.|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~ 102 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNF 102 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEe
Confidence 45789999 779999999999999999999999999888999999999999999999 8999998 689999999
Q ss_pred cccCCCC
Q 005703 137 AKSFPQK 143 (682)
Q Consensus 137 a~~~~~~ 143 (682)
+...+..
T Consensus 103 a~~~p~~ 109 (114)
T 2cq2_A 103 VEKVQWS 109 (114)
T ss_dssp ESCCCCS
T ss_pred cccCccc
Confidence 9866543
No 108
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.8e-15 Score=136.53 Aligned_cols=78 Identities=13% Similarity=0.139 Sum_probs=70.8
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCe-EEEEEe-----cCCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEe
Q 005703 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTV-VECTIT-----DSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEM 136 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V-~~v~i~-----~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~ 136 (682)
.+...++|||+|||+.+|+++|++||..||.| ..|.|+ ..+|||||+|.+.++|+.||.+||..|.|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHV 90 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Confidence 44567899999999999999999999999999 788886 368999999999999999996699999999999999
Q ss_pred cccC
Q 005703 137 AKSF 140 (682)
Q Consensus 137 a~~~ 140 (682)
+...
T Consensus 91 a~~~ 94 (114)
T 2cpy_A 91 VTLE 94 (114)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8753
No 109
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.3e-15 Score=134.85 Aligned_cols=79 Identities=24% Similarity=0.381 Sum_probs=71.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEecc
Q 005703 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEMAK 138 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~a~ 138 (682)
...++|||+|||+.+|+++|++||..||.|..|.|+ ..+|||||+|.+.++|+.||.+||..|.|+.|.|.|+.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECC
Confidence 345899999999999999999999999999999997 24789999999999999999559999999999999998
Q ss_pred cCCCC
Q 005703 139 SFPQK 143 (682)
Q Consensus 139 ~~~~~ 143 (682)
.....
T Consensus 105 ~~~~~ 109 (116)
T 1x4b_A 105 AREES 109 (116)
T ss_dssp SCCCC
T ss_pred CCccC
Confidence 76543
No 110
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=6.8e-16 Score=136.24 Aligned_cols=77 Identities=32% Similarity=0.439 Sum_probs=70.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEec------CCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEec
Q 005703 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITD------SKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMA 137 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~------~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a 137 (682)
...++|||+|||+.+++++|+++|..||.|..|.|+. .+|||||+|.+.++|+.|| .|||..|.|+.|.|.|+
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 3468999999999999999999999999999999872 3799999999999999999 79999999999999998
Q ss_pred ccCC
Q 005703 138 KSFP 141 (682)
Q Consensus 138 ~~~~ 141 (682)
....
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 8643
No 111
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.8e-15 Score=131.80 Aligned_cols=80 Identities=30% Similarity=0.358 Sum_probs=69.5
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe--cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEeccc
Q 005703 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT--DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKS 139 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~--~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~ 139 (682)
.+...++|||+|||+.+|+++|+++|.+||.|.-+... ..+|||||+|.+.++|+.|| .|||+.|.|+.|.|.|+..
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 45568999999999999999999999999988322211 46899999999999999999 7999999999999999987
Q ss_pred CCC
Q 005703 140 FPQ 142 (682)
Q Consensus 140 ~~~ 142 (682)
...
T Consensus 91 ~~~ 93 (101)
T 2fc9_A 91 RGS 93 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 644
No 112
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.60 E-value=1.5e-15 Score=141.66 Aligned_cols=81 Identities=27% Similarity=0.413 Sum_probs=73.6
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEE
Q 005703 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVE 135 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~ 135 (682)
.....++|||+|||+.+|+++|+++|..||.|..|.|+ ..+|||||+|.+.++|+.|| .|||..|.|+.|.|.
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999996 35789999999999999999 799999999999999
Q ss_pred ecccCCCC
Q 005703 136 MAKSFPQK 143 (682)
Q Consensus 136 ~a~~~~~~ 143 (682)
|+......
T Consensus 123 ~a~~~~~~ 130 (135)
T 2lea_A 123 MARYGRPP 130 (135)
T ss_dssp ECCCCCCC
T ss_pred ECCCCCCC
Confidence 99875543
No 113
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.59 E-value=1.8e-15 Score=144.70 Aligned_cols=74 Identities=24% Similarity=0.249 Sum_probs=68.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCC--CeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEe
Q 005703 66 LKKTLQVSNLSPLLTVEQLRQLFSFCG--TVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEM 136 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G--~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~ 136 (682)
..++|||+|||+.+|+++|+++|..|| .|..|.|+ ..+|||||+|.+.++|+.|| .|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 99999996 35789999999999999999 8999999999999999
Q ss_pred ccc
Q 005703 137 AKS 139 (682)
Q Consensus 137 a~~ 139 (682)
+..
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 874
No 114
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.59 E-value=1e-15 Score=141.63 Aligned_cols=82 Identities=23% Similarity=0.379 Sum_probs=72.9
Q ss_pred cCCCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEE--EEEe------cCCCeEEEEeCCHHHHHHHH-HcCCc----e
Q 005703 60 AGKADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVE--CTIT------DSKHFAYIEYSKPEEATAAL-ALNNM----D 126 (682)
Q Consensus 60 ~~~~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~--v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~----~ 126 (682)
....+...++|||+|||+.+|+++|+++|..||.|.. |.|+ ..+|||||+|.+. +|..|| .|||. .
T Consensus 16 ~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 16 EPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp CCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 3445567899999999999999999999999999976 8886 3679999999999 999999 89999 9
Q ss_pred ecCceEEEEecccCCC
Q 005703 127 VGGRPLNVEMAKSFPQ 142 (682)
Q Consensus 127 l~Gr~L~V~~a~~~~~ 142 (682)
|+|+.|.|.|+.+...
T Consensus 95 ~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 95 IDGKTINVEFAKGSKR 110 (131)
T ss_dssp GGGCCCCCEECCCSCC
T ss_pred CCCEEEEEEECCCCCC
Confidence 9999999999987543
No 115
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.59 E-value=1.1e-15 Score=134.59 Aligned_cols=76 Identities=24% Similarity=0.355 Sum_probs=68.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEec-------CCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEe
Q 005703 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITD-------SKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEM 136 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~-------~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~ 136 (682)
....++|||+|||+.+++++|+++|..|| |..|.|+. .+|||||+|.+.++|+.||.|||..|+|+.|.|.+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDV 94 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEe
Confidence 34579999999999999999999999999 99999972 47899999999999999999999999999999999
Q ss_pred cccC
Q 005703 137 AKSF 140 (682)
Q Consensus 137 a~~~ 140 (682)
+...
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 8764
No 116
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.59 E-value=2.5e-15 Score=144.53 Aligned_cols=80 Identities=23% Similarity=0.286 Sum_probs=71.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEec------CCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEe
Q 005703 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITD------SKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEM 136 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~------~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~ 136 (682)
....++|||+|||+.+|+++|++||.+||.|..|.|+. .+|||||+|.+.++|+.|| .|||+.|.|+.|.|.|
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999972 4699999999999999999 7999999999999999
Q ss_pred cccCCCC
Q 005703 137 AKSFPQK 143 (682)
Q Consensus 137 a~~~~~~ 143 (682)
+......
T Consensus 149 a~~~~~~ 155 (165)
T 1rk8_A 149 CFVKGPK 155 (165)
T ss_dssp SEECC--
T ss_pred ecCCCCC
Confidence 9876543
No 117
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.59 E-value=2.6e-15 Score=137.04 Aligned_cols=75 Identities=29% Similarity=0.454 Sum_probs=69.9
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEecccC
Q 005703 67 KKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEMAKSF 140 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~a~~~ 140 (682)
.++|||+|||+.+|+++|+++|..||.|..|.|+ ..+|||||+|.+.++|+.||.|||+.|.|+.|.|.|+...
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~ 115 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRTN 115 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCCC
Confidence 5799999999999999999999999999999986 2478999999999999999999999999999999999864
Q ss_pred C
Q 005703 141 P 141 (682)
Q Consensus 141 ~ 141 (682)
.
T Consensus 116 ~ 116 (124)
T 2jwn_A 116 M 116 (124)
T ss_dssp C
T ss_pred C
Confidence 3
No 118
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=9e-15 Score=129.84 Aligned_cols=78 Identities=21% Similarity=0.200 Sum_probs=69.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEE-EEEe-----cCCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEec
Q 005703 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVE-CTIT-----DSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEMA 137 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~-v~i~-----~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~a 137 (682)
.....+|||+|||+.+|+++|++||..||.|.. |.|+ ..+|||||+|.+.++|+.||.+|+..|+|+.|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 91 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEEC
Confidence 345789999999999999999999999999987 7775 4689999999999999999955999999999999988
Q ss_pred ccCC
Q 005703 138 KSFP 141 (682)
Q Consensus 138 ~~~~ 141 (682)
....
T Consensus 92 ~~~~ 95 (104)
T 1wg5_A 92 SRAE 95 (104)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 7543
No 119
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.58 E-value=6e-15 Score=140.14 Aligned_cols=81 Identities=27% Similarity=0.413 Sum_probs=73.6
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEE
Q 005703 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVE 135 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~ 135 (682)
......+|||+|||+.+|+++|+++|..||.|..|.|+ ..+|||||+|.+.++|+.|| .|||..|.|+.|.|.
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34557899999999999999999999999999999997 36799999999999999999 799999999999999
Q ss_pred ecccCCCC
Q 005703 136 MAKSFPQK 143 (682)
Q Consensus 136 ~a~~~~~~ 143 (682)
|+......
T Consensus 146 ~a~~~~~~ 153 (158)
T 2kn4_A 146 MARYGRPP 153 (158)
T ss_dssp EECCSSCC
T ss_pred ECCCCCCC
Confidence 99876443
No 120
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.58 E-value=2.5e-15 Score=129.21 Aligned_cols=74 Identities=18% Similarity=0.266 Sum_probs=70.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecccC
Q 005703 66 LKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKSF 140 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~~ 140 (682)
..++|||+|||+.+++++|+++|.+| .|..|.|...+|||||+|.+.++|+.|| .|||..|.|+.|.|.|+...
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 46899999999999999999999999 9999999888999999999999999999 79999999999999998754
No 121
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.58 E-value=2e-15 Score=127.63 Aligned_cols=68 Identities=18% Similarity=0.370 Sum_probs=63.3
Q ss_pred CCEEEEeCCCCCC------CHHHHHHHHhcCCCeEEEEEe----cCCCeEEEEeCCHHHHHHHH-HcCCceecCc-eEEE
Q 005703 67 KKTLQVSNLSPLL------TVEQLRQLFSFCGTVVECTIT----DSKHFAYIEYSKPEEATAAL-ALNNMDVGGR-PLNV 134 (682)
Q Consensus 67 ~~tL~V~NLp~~v------teedL~~~F~~~G~V~~v~i~----~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr-~L~V 134 (682)
.++|||+|||..+ |+++|.++|.+||.|..|.|+ .++|||||+|.+.++|+.|| .|||..|.|+ .|.|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 3689999999999 789999999999999999987 46899999999999999999 7999999999 8876
No 122
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=4.8e-15 Score=127.82 Aligned_cols=77 Identities=22% Similarity=0.297 Sum_probs=70.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe-----cCCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEecc
Q 005703 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT-----DSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEMAK 138 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~-----~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~a~ 138 (682)
.....+|||+|||+.+|+++|+++|..| .|..|.|+ ..+|||||+|.+.++|+.||.|||..|+|+.|.|.++.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEES
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECC
Confidence 3457899999999999999999999999 99999987 24789999999999999999999999999999999998
Q ss_pred cCC
Q 005703 139 SFP 141 (682)
Q Consensus 139 ~~~ 141 (682)
..+
T Consensus 86 ~~~ 88 (91)
T 2dgw_A 86 SGP 88 (91)
T ss_dssp SCC
T ss_pred cCC
Confidence 653
No 123
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.58 E-value=9.8e-16 Score=133.00 Aligned_cols=74 Identities=19% Similarity=0.275 Sum_probs=66.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecc
Q 005703 66 LKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAK 138 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~ 138 (682)
..++|||+|||+.+|+++|+++|..||.|..|.|+ ..+|||||+|.+.++|+.|| .|||..|.|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 46899999999999999999999999999877665 35699999999999999999 799999999999999876
Q ss_pred c
Q 005703 139 S 139 (682)
Q Consensus 139 ~ 139 (682)
.
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 3
No 124
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=8.8e-16 Score=130.66 Aligned_cols=74 Identities=20% Similarity=0.296 Sum_probs=67.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEec
Q 005703 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMA 137 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a 137 (682)
.+.++|||+|||+.+++++|+++|..||.|..|.|+ ..+|||||+|.+.++|+.|| .|||..|.|+.|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 357899999999999999999999999999999987 24799999999999999999 79999999999988765
Q ss_pred c
Q 005703 138 K 138 (682)
Q Consensus 138 ~ 138 (682)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 125
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.58 E-value=6.5e-15 Score=136.65 Aligned_cols=76 Identities=26% Similarity=0.454 Sum_probs=69.6
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEE
Q 005703 62 KADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNV 134 (682)
Q Consensus 62 ~~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V 134 (682)
......++|||+|||+.+|+++|+++|..||.|..|.|+ ..+|||||+|.+.++|+.|| .|||..|.|+.|.|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345568899999999999999999999999999999996 35899999999999999999 89999999999999
Q ss_pred Eec
Q 005703 135 EMA 137 (682)
Q Consensus 135 ~~a 137 (682)
.||
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 985
No 126
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=7.3e-15 Score=132.03 Aligned_cols=79 Identities=18% Similarity=0.275 Sum_probs=70.9
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEec-----CCCeEEEEeCCHHHHHHHH-HcCCcee--------
Q 005703 62 KADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITD-----SKHFAYIEYSKPEEATAAL-ALNNMDV-------- 127 (682)
Q Consensus 62 ~~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~-----~kg~aFVeF~s~e~A~~Al-~Lng~~l-------- 127 (682)
..+...++|||+|||+.+|+++|+++|..||.|..|.|+. .+|||||+|.+.++|+.|| .|||..|
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 4455679999999999999999999999999999999972 4689999999999999999 7999999
Q ss_pred cCceEEEEecccC
Q 005703 128 GGRPLNVEMAKSF 140 (682)
Q Consensus 128 ~Gr~L~V~~a~~~ 140 (682)
.|+.|.|.|+.+.
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 5788999998753
No 127
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.57 E-value=3.2e-15 Score=136.10 Aligned_cols=77 Identities=16% Similarity=0.230 Sum_probs=70.2
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCC---eEEEEEe-----cCCCeEEEEeCCHHHHHHHHHcCCceecCceEEE
Q 005703 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGT---VVECTIT-----DSKHFAYIEYSKPEEATAALALNNMDVGGRPLNV 134 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~---V~~v~i~-----~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V 134 (682)
.....++|||+|||+.+|+++|++||..||. |..|.|+ ..+|||||+|.+.++|+.||.|||..|+|+.|.|
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V 92 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEV 92 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEE
Confidence 3456789999999999999999999999999 8888887 3578999999999999999999999999999999
Q ss_pred Eeccc
Q 005703 135 EMAKS 139 (682)
Q Consensus 135 ~~a~~ 139 (682)
.++..
T Consensus 93 ~~a~~ 97 (118)
T 2db1_A 93 FKSHR 97 (118)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98864
No 128
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.57 E-value=4.9e-15 Score=142.49 Aligned_cols=75 Identities=25% Similarity=0.348 Sum_probs=68.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe--cCCCeEEEEeCCHHHHHHHH-HcCCceecC--ceEEEEecccCC
Q 005703 67 KKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT--DSKHFAYIEYSKPEEATAAL-ALNNMDVGG--RPLNVEMAKSFP 141 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~--~~kg~aFVeF~s~e~A~~Al-~Lng~~l~G--r~L~V~~a~~~~ 141 (682)
..+|||+||++.+|+++|+++|++||.|..|.|. ..+|||||+|.+.++|+.|| .|||..|.| +.|.|+|++...
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 4579999999999999999999999999999997 34679999999999999999 899999966 999999998753
No 129
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1e-14 Score=126.72 Aligned_cols=77 Identities=22% Similarity=0.263 Sum_probs=67.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCC-CeEEEEeCCHHHHHHHHHcCCceecCceEEEEecccCCC
Q 005703 66 LKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSK-HFAYIEYSKPEEATAALALNNMDVGGRPLNVEMAKSFPQ 142 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~k-g~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~a~~~~~ 142 (682)
..++|||+|||+.+|+++|+++|..||.|..|.+.... .||||+|.+.++|+.||.|||..|+|+.|.|.++.....
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCcCCC
Confidence 46799999999999999999999999999998333211 299999999999999999999999999999998875543
No 130
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.57 E-value=3e-15 Score=130.27 Aligned_cols=80 Identities=23% Similarity=0.284 Sum_probs=70.6
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe-cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecccC
Q 005703 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT-DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKSF 140 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~-~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~~ 140 (682)
.+...++|||+|||+.+|+++|+++|..||.|..|... ..+|||||+|.+.++|+.|| .|||..|.|+.|.|.|+.+.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 44567899999999999999999999999999887222 46799999999999999999 79999999999999999765
Q ss_pred CC
Q 005703 141 PQ 142 (682)
Q Consensus 141 ~~ 142 (682)
..
T Consensus 92 ~~ 93 (96)
T 1fjc_A 92 GG 93 (96)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 131
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2e-15 Score=138.25 Aligned_cols=76 Identities=14% Similarity=0.175 Sum_probs=67.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEE-Ee-----cCCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEec
Q 005703 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECT-IT-----DSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEMA 137 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~-i~-----~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~a 137 (682)
.....+|||+|||+.+|+++|.+||..||.|..|. |. ..+|||||+|.+.++|+.||.|||..|+|+.|.|.++
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 44568999999999999999999999999997733 33 3579999999999999999999999999999999998
Q ss_pred cc
Q 005703 138 KS 139 (682)
Q Consensus 138 ~~ 139 (682)
..
T Consensus 102 ~~ 103 (124)
T 1wel_A 102 TK 103 (124)
T ss_dssp CH
T ss_pred CH
Confidence 64
No 132
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.7e-15 Score=133.21 Aligned_cols=77 Identities=17% Similarity=0.198 Sum_probs=68.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe-----cCCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEecc
Q 005703 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT-----DSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEMAK 138 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~-----~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~a~ 138 (682)
.....+|||+|||+.+|+++|++||..||.| .|.|+ .++|||||+|.+.++|+.||.||+..|.|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNS 90 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 3457899999999999999999999999954 88886 35789999999999999999889999999999999887
Q ss_pred cCC
Q 005703 139 SFP 141 (682)
Q Consensus 139 ~~~ 141 (682)
...
T Consensus 91 ~~~ 93 (102)
T 1wez_A 91 TAG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 133
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=9.6e-15 Score=127.08 Aligned_cols=76 Identities=26% Similarity=0.392 Sum_probs=68.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEE-Ee--cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecccC
Q 005703 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECT-IT--DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKSF 140 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~-i~--~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~~ 140 (682)
...++|||+|||+.+|+++|+++|..||.|..|. |+ ...++|||+|.+.++|+.|| .|||..|.|+.|.|.|+.+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 3478999999999999999999999999999994 66 24456999999999999999 79999999999999999865
No 134
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.56 E-value=6.8e-15 Score=125.41 Aligned_cols=71 Identities=27% Similarity=0.468 Sum_probs=67.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC----C-------CeEEEEEecCCCeEEEEeCCHHHHHHHHHcCCceecCceEEE
Q 005703 66 LKKTLQVSNLSPLLTVEQLRQLFSFC----G-------TVVECTITDSKHFAYIEYSKPEEATAALALNNMDVGGRPLNV 134 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~----G-------~V~~v~i~~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V 134 (682)
..++|||+|||+.+|+++|+++|..| | .|..|.|...+|||||+|.+.++|+.||.|||..|.|+.|.|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~~l~g~~~~g~~l~V 84 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKI 84 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHGGGTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHHhcCCCEECCeEEEE
Confidence 47899999999999999999999999 8 999999998899999999999999999999999999999999
Q ss_pred Ee
Q 005703 135 EM 136 (682)
Q Consensus 135 ~~ 136 (682)
..
T Consensus 85 ~r 86 (87)
T 2hzc_A 85 RR 86 (87)
T ss_dssp EC
T ss_pred eC
Confidence 73
No 135
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.56 E-value=1.1e-15 Score=131.48 Aligned_cols=75 Identities=29% Similarity=0.442 Sum_probs=65.5
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecccC
Q 005703 68 KTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKSF 140 (682)
Q Consensus 68 ~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~~ 140 (682)
++|||+|||..+++++|+++|..||.|..|.|+ ..+|||||+|.+.+ |+.|| .|||..|+|+.|.|.+|...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 589999999999999999999999999999997 34789999999999 99999 79999999999999999875
Q ss_pred CCC
Q 005703 141 PQK 143 (682)
Q Consensus 141 ~~~ 143 (682)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 443
No 136
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.56 E-value=1.6e-15 Score=133.44 Aligned_cols=80 Identities=21% Similarity=0.330 Sum_probs=69.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe-----cCCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEecc
Q 005703 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT-----DSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEMAK 138 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~-----~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~a~ 138 (682)
.....+|||+|||+.+|+++|+++|..||.|..+.|. ..+|||||+|.+.++|+.||.|||..|.|+.|.|.++.
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcC
Confidence 3457899999999999999999999999987662222 57899999999999999999999999999999999998
Q ss_pred cCCCC
Q 005703 139 SFPQK 143 (682)
Q Consensus 139 ~~~~~ 143 (682)
.....
T Consensus 94 ~~~~~ 98 (101)
T 1fj7_A 94 GRDGT 98 (101)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 75443
No 137
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.56 E-value=1.1e-14 Score=134.01 Aligned_cols=73 Identities=26% Similarity=0.256 Sum_probs=66.7
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCe-EEEEeCCHHHHHHHH-HcCCceecC--ceEEEEecccCC
Q 005703 69 TLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHF-AYIEYSKPEEATAAL-ALNNMDVGG--RPLNVEMAKSFP 141 (682)
Q Consensus 69 tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~-aFVeF~s~e~A~~Al-~Lng~~l~G--r~L~V~~a~~~~ 141 (682)
.|||+||++.+|+++|.++|++||.|..|.|....|| |||+|.+.++|+.|| .|||..|.| +.|.|.||+...
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 4679999999999999999999999999999754596 999999999999999 899999988 689999998654
No 138
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.56 E-value=8.6e-15 Score=134.06 Aligned_cols=77 Identities=29% Similarity=0.391 Sum_probs=71.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecccCCC
Q 005703 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKSFPQ 142 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~~~~ 142 (682)
....++|||+|| .+|+++|+++|..||.|..|.|...+|||||+|.+.++|+.|| .|||..|.|+.|.|.|+.....
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 113 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCC
Confidence 345789999997 6999999999999999999999989999999999999999999 8999999999999999987543
No 139
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.56 E-value=2.1e-15 Score=125.06 Aligned_cols=69 Identities=22% Similarity=0.370 Sum_probs=64.6
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEec
Q 005703 69 TLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEMA 137 (682)
Q Consensus 69 tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~a 137 (682)
+|||+|||+.+|+++|+++|..||.|..|.|+ ..+|||||+|.+.++|+.||.++|..|.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 69999999999999999999999999999986 3579999999999999999977999999999999875
No 140
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=9.5e-15 Score=128.53 Aligned_cols=82 Identities=27% Similarity=0.312 Sum_probs=69.3
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe---cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEec
Q 005703 62 KADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT---DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMA 137 (682)
Q Consensus 62 ~~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~---~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a 137 (682)
......++|||+|||+.+|+++|+++|..|+.|.-+... ..+|||||+|.+.++|+.|| .|||+.|.|+.|.|.|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 345568999999999999999999999998655443322 34689999999999999999 79999999999999999
Q ss_pred ccCCCC
Q 005703 138 KSFPQK 143 (682)
Q Consensus 138 ~~~~~~ 143 (682)
.+....
T Consensus 90 ~~~~~~ 95 (102)
T 2fc8_A 90 KPKGEG 95 (102)
T ss_dssp CCCCSS
T ss_pred cCCCCC
Confidence 876543
No 141
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=2.8e-15 Score=124.84 Aligned_cols=69 Identities=22% Similarity=0.392 Sum_probs=64.3
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEec
Q 005703 68 KTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMA 137 (682)
Q Consensus 68 ~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a 137 (682)
++|||+|||+.+++++|+++|.+||.|..|.|+ ..+|||||+|.+.++|+.|| .|+ ..|+|+.|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999987 24789999999999999999 677 9999999999987
No 142
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.55 E-value=1.2e-14 Score=125.66 Aligned_cols=75 Identities=21% Similarity=0.335 Sum_probs=62.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe-cCCCeEEEEeCCHHHHHHHHHcCC--ceecCceEEEEecccC
Q 005703 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT-DSKHFAYIEYSKPEEATAALALNN--MDVGGRPLNVEMAKSF 140 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~-~~kg~aFVeF~s~e~A~~Al~Lng--~~l~Gr~L~V~~a~~~ 140 (682)
.....+|||+|||+.+|+++|+++|.+||.|..|.|+ .++|||||+|.+.++|+. |+| +.+.|+.|.|.++.+.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~---~~~~~~~~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS---LCGEDLIIKGISVHISNAEPK 84 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH---HTTCEEEETTEEEEEEECC--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH---HcCCCcccCCEEEEEEEcCCC
Confidence 4468899999999999999999999999999999998 579999999999999884 344 4456999999998765
Q ss_pred C
Q 005703 141 P 141 (682)
Q Consensus 141 ~ 141 (682)
.
T Consensus 85 ~ 85 (89)
T 3d2w_A 85 H 85 (89)
T ss_dssp -
T ss_pred C
Confidence 3
No 143
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.55 E-value=1.4e-14 Score=134.39 Aligned_cols=74 Identities=27% Similarity=0.389 Sum_probs=68.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe-cCCCe-EEEEeCCHHHHHHHH-HcCCceecC--ceEEEEecccC
Q 005703 67 KKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT-DSKHF-AYIEYSKPEEATAAL-ALNNMDVGG--RPLNVEMAKSF 140 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~-~~kg~-aFVeF~s~e~A~~Al-~Lng~~l~G--r~L~V~~a~~~ 140 (682)
.-.|||+||++.+|+++|.++|++||.|..|.|. ..+|| |||+|.+.++|+.|| .|||..|.| +.|+|+|++..
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 4578899999999999999999999999999887 55788 999999999999999 899999998 89999999865
No 144
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.54 E-value=7.4e-15 Score=137.56 Aligned_cols=79 Identities=23% Similarity=0.271 Sum_probs=69.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEE--------EEEe---cCCCeEEEEeCCHHHHHHHH-HcCCceecCceE
Q 005703 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVE--------CTIT---DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPL 132 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~--------v~i~---~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L 132 (682)
.+.++|||+|||+.+|+++|.++|..||.|.. |.+. ..+|||||+|.+.++|..|| .|||+.|.|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 45789999999999999999999999998876 3333 57899999999999999999 799999999999
Q ss_pred EEEecccCCCC
Q 005703 133 NVEMAKSFPQK 143 (682)
Q Consensus 133 ~V~~a~~~~~~ 143 (682)
.|.|+......
T Consensus 123 ~V~~a~~~~~~ 133 (143)
T 3egn_A 123 VVQFARSARPK 133 (143)
T ss_dssp EEEECCCSCC-
T ss_pred EEEECCCCCCc
Confidence 99999865443
No 145
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.54 E-value=4.9e-15 Score=132.24 Aligned_cols=77 Identities=19% Similarity=0.155 Sum_probs=70.2
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCC---eEEEEEe-----cCCCeEEEEeCCHHHHHHHHHcCCceecCceEEE
Q 005703 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGT---VVECTIT-----DSKHFAYIEYSKPEEATAALALNNMDVGGRPLNV 134 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~---V~~v~i~-----~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V 134 (682)
......+|||+|||+.+|+++|++||..||. |..|.|+ ..+|||||+|.+.++|+.||.|||..|+|+.|.|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 86 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEV 86 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEE
Confidence 3446789999999999999999999999998 8899987 3678999999999999999999999999999999
Q ss_pred Eeccc
Q 005703 135 EMAKS 139 (682)
Q Consensus 135 ~~a~~ 139 (682)
.++..
T Consensus 87 ~~a~~ 91 (107)
T 2lmi_A 87 YEINN 91 (107)
T ss_dssp EECCH
T ss_pred EECCH
Confidence 98764
No 146
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.6e-14 Score=130.04 Aligned_cols=72 Identities=17% Similarity=0.170 Sum_probs=67.1
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe-----cCCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEeccc
Q 005703 67 KKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT-----DSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEMAKS 139 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~-----~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~a~~ 139 (682)
..+|||+|||+.+|+++|++||..| .|..|.|+ ..+|||||+|.+.++|+.||.|||..|+|+.|.|..+..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCc
Confidence 4799999999999999999999999 89999997 368999999999999999999999999999999988753
No 147
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.54 E-value=7.2e-15 Score=149.17 Aligned_cols=74 Identities=20% Similarity=0.231 Sum_probs=68.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCC--CeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEe
Q 005703 66 LKKTLQVSNLSPLLTVEQLRQLFSFCG--TVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEM 136 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G--~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~ 136 (682)
..++|||+||++.||+++|++||..|| .|+.|.|+ ..+|||||+|.+.++|+.|| .|||+.|.|+.|.|.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 99999997 35789999999999999999 7999999999999999
Q ss_pred ccc
Q 005703 137 AKS 139 (682)
Q Consensus 137 a~~ 139 (682)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 148
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.53 E-value=1.3e-14 Score=141.56 Aligned_cols=77 Identities=22% Similarity=0.355 Sum_probs=71.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe-----cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecc
Q 005703 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT-----DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAK 138 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~-----~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~ 138 (682)
...++|||+|||+.+++++|++||..||.|+.|.|+ ..+|||||+|.+.++|+.|| .|||+.|.|+.|.|.|+.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 446899999999999999999999999999999997 35799999999999999999 799999999999999997
Q ss_pred cCC
Q 005703 139 SFP 141 (682)
Q Consensus 139 ~~~ 141 (682)
...
T Consensus 166 ~~~ 168 (177)
T 2f3j_A 166 SQI 168 (177)
T ss_dssp SGG
T ss_pred CCC
Confidence 643
No 149
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.6e-14 Score=123.87 Aligned_cols=77 Identities=18% Similarity=0.290 Sum_probs=66.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe-cCCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEecccCCCC
Q 005703 66 LKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT-DSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEMAKSFPQK 143 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~-~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~a~~~~~~ 143 (682)
..++|||+|||+.+|+++|+++|..||.|..|.|+ ..+|||||+|.+.++|+.|+.. ++.+.|+.|.|.++.+....
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~~~~~ 81 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEPKHNS 81 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCCCCCC
Confidence 47899999999999999999999999999999997 5689999999999999865432 45678999999998876543
No 150
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.53 E-value=8.8e-15 Score=136.92 Aligned_cols=77 Identities=16% Similarity=0.215 Sum_probs=69.8
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCC---eEEEEEe-----cCCCeEEEEeCCHHHHHHHHHcCCceecCceEEE
Q 005703 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGT---VVECTIT-----DSKHFAYIEYSKPEEATAALALNNMDVGGRPLNV 134 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~---V~~v~i~-----~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V 134 (682)
.....++|||+|||+.+|+++|++||..||. |..|.|+ .++|||||+|.+.++|+.||.|||..|+|+.|.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V 119 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEV 119 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEE
Confidence 3445789999999999999999999999999 8888887 3578999999999999999999999999999999
Q ss_pred Eeccc
Q 005703 135 EMAKS 139 (682)
Q Consensus 135 ~~a~~ 139 (682)
.++..
T Consensus 120 ~~a~~ 124 (136)
T 2hgl_A 120 FKSHR 124 (136)
T ss_dssp EECCH
T ss_pred EECCh
Confidence 98753
No 151
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.52 E-value=2.9e-14 Score=142.21 Aligned_cols=75 Identities=21% Similarity=0.246 Sum_probs=70.2
Q ss_pred CCCEEEEeCCC-CCCCHHHHHHHHhcCCCeEEEEEe-cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecccC
Q 005703 66 LKKTLQVSNLS-PLLTVEQLRQLFSFCGTVVECTIT-DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKSF 140 (682)
Q Consensus 66 ~~~tL~V~NLp-~~vteedL~~~F~~~G~V~~v~i~-~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~~ 140 (682)
..++|||+||| +.+|+++|.++|..||.|..|.|+ ..+|||||+|.+.++|+.|| .|||+.|.|+.|.|.|++..
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQP 80 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCC
Confidence 47899999999 899999999999999999999998 46799999999999999999 89999999999999998753
No 152
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=3.4e-14 Score=123.78 Aligned_cols=73 Identities=27% Similarity=0.290 Sum_probs=65.1
Q ss_pred CCE-EEEeCCCCCCCHHH----HHHHHhcC-CCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEeccc
Q 005703 67 KKT-LQVSNLSPLLTVEQ----LRQLFSFC-GTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKS 139 (682)
Q Consensus 67 ~~t-L~V~NLp~~vteed----L~~~F~~~-G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~ 139 (682)
..| |||+|||+.+++++ |.++|.+| |+|+.|. .|||||+|.+.++|+.|| .|||..|.|+.|.|.||+.
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~ 83 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT----GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPK 83 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC----TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCC
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe----cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCC
Confidence 444 99999999999988 55899999 5999983 499999999999999999 8999999999999999987
Q ss_pred CCCC
Q 005703 140 FPQK 143 (682)
Q Consensus 140 ~~~~ 143 (682)
....
T Consensus 84 ~sd~ 87 (96)
T 2diu_A 84 NREL 87 (96)
T ss_dssp SCCC
T ss_pred Ccce
Confidence 6543
No 153
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.51 E-value=2.9e-14 Score=134.50 Aligned_cols=94 Identities=24% Similarity=0.370 Sum_probs=79.2
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe-----cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecccCC
Q 005703 68 KTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT-----DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKSFP 141 (682)
Q Consensus 68 ~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~-----~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~~~ 141 (682)
++|||+|||+.+|+++|.++|..||.|..|.|+ ..+|||||+|.+.++|..|| .|||..|.|+.|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 589999999999999999999999999999997 35689999999999999999 899999999999999998765
Q ss_pred CCCCCCCCCccCCchhhhhH
Q 005703 142 QKPSHLNSSLAGSSLPMMMQ 161 (682)
Q Consensus 142 ~~~~~~~~~~~~~~~P~~~~ 161 (682)
.........+...++|....
T Consensus 81 ~~~~~~~~~l~v~nl~~~~t 100 (166)
T 3md3_A 81 QSSSDDTFNLFVGDLNVNVD 100 (166)
T ss_dssp CCCCTTCEEEEEESCCTTCC
T ss_pred CCCCCCCceEEECCCCCCCC
Confidence 54443334455566665443
No 154
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.26 E-value=1.3e-15 Score=137.54 Aligned_cols=80 Identities=21% Similarity=0.333 Sum_probs=71.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEE--------EEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceec
Q 005703 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVE--------CTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVG 128 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~--------v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~ 128 (682)
....++|||+|||+.+++++|+++|..||.|.. |.|+ ..+|||||+|.+.++|+.|| .|||..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 446789999999999999999999999999998 7775 35789999999999999999 79999999
Q ss_pred CceEEEEecccCCCC
Q 005703 129 GRPLNVEMAKSFPQK 143 (682)
Q Consensus 129 Gr~L~V~~a~~~~~~ 143 (682)
|+.|.|.|+......
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999876543
No 155
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.50 E-value=1.5e-14 Score=144.38 Aligned_cols=95 Identities=22% Similarity=0.334 Sum_probs=77.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecc
Q 005703 66 LKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAK 138 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~ 138 (682)
+.++|||+|||+.+|+++|++||.+||+|+.|.|+ ..+|||||+|.+.++|+.|| .|||..|.|+.|.|.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 56899999999999999999999999999999997 25689999999999999999 899999999999999987
Q ss_pred cCCCCCCCCCCCccCCchhhhh
Q 005703 139 SFPQKPSHLNSSLAGSSLPMMM 160 (682)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~P~~~ 160 (682)
............+.+.+||...
T Consensus 94 ~~~~~~~~~~~~l~v~nl~~~~ 115 (213)
T 4f02_A 94 RDPSLRKSGVGNIFIKNLDKSI 115 (213)
T ss_dssp CCTHHHHHCTTEEEEESCCTTC
T ss_pred ccccccccccccceECCccccc
Confidence 5432222122234455555543
No 156
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.50 E-value=8.8e-15 Score=137.44 Aligned_cols=78 Identities=18% Similarity=0.195 Sum_probs=69.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe-----cCCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEecc
Q 005703 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT-----DSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEMAK 138 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~-----~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~a~ 138 (682)
.....+|||+|||+.+|+++|++||..|| |+.|.|+ .++|||||+|.+.++|+.||.||+..|.|+.|.|.++.
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 121 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECC
Confidence 34578999999999999999999999999 7789887 46899999999999999999999999999999999887
Q ss_pred cCCC
Q 005703 139 SFPQ 142 (682)
Q Consensus 139 ~~~~ 142 (682)
....
T Consensus 122 ~~~~ 125 (139)
T 2hgn_A 122 TTGA 125 (139)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 6543
No 157
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.50 E-value=3.1e-14 Score=145.18 Aligned_cols=79 Identities=25% Similarity=0.337 Sum_probs=71.4
Q ss_pred CCCCCEEEEeCCCCCC---------CHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCcee------
Q 005703 64 DALKKTLQVSNLSPLL---------TVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDV------ 127 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~v---------teedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l------ 127 (682)
+...++||||||+..+ ++++|.++|.+||+|+.|.|+..+|||||+|.+.++|+.|| +|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~ 210 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDK 210 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTST
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccc
Confidence 4567899999999998 79999999999999999999989999999999999999999 8999999
Q ss_pred ------cCceEEEEecccCCC
Q 005703 128 ------GGRPLNVEMAKSFPQ 142 (682)
Q Consensus 128 ------~Gr~L~V~~a~~~~~ 142 (682)
.|+.|.|.||...+.
T Consensus 211 e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 211 EWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp TGGGGGGSCCCEEEECC----
T ss_pred cccccCCCCEEEEEEccCCCC
Confidence 899999999986543
No 158
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.49 E-value=3.6e-14 Score=131.10 Aligned_cols=74 Identities=23% Similarity=0.240 Sum_probs=66.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeE--EEEEe-----cCCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEec
Q 005703 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGTVV--ECTIT-----DSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEMA 137 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~V~--~v~i~-----~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~a 137 (682)
....+|||+|||+.+|+++|++||..| .|+ .|.|+ .++|||||+|.+.++|+.||.+++..|+|+.|.|.++
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKS 118 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEEC
Confidence 457899999999999999999999999 576 88887 3689999999999999999977889999999999887
Q ss_pred cc
Q 005703 138 KS 139 (682)
Q Consensus 138 ~~ 139 (682)
..
T Consensus 119 ~~ 120 (126)
T 2hgm_A 119 SQ 120 (126)
T ss_dssp CH
T ss_pred CH
Confidence 53
No 159
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.49 E-value=1.4e-14 Score=127.53 Aligned_cols=76 Identities=17% Similarity=0.341 Sum_probs=69.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEec-----CCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEeccc
Q 005703 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITD-----SKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEMAKS 139 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~-----~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~a~~ 139 (682)
...++|||+|||+.+|+++|.++|..||.|..|.|+. .+|||||+|.+.++|+.||. +|..|+|+.|.|.++..
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECCc
Confidence 3468999999999999999999999999999999973 56999999999999999999 99999999999999886
Q ss_pred CC
Q 005703 140 FP 141 (682)
Q Consensus 140 ~~ 141 (682)
..
T Consensus 86 ~~ 87 (102)
T 2xs2_A 86 KQ 87 (102)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 160
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=2.2e-14 Score=131.97 Aligned_cols=73 Identities=15% Similarity=0.122 Sum_probs=65.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCe----EEEEEe-----cCCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEe
Q 005703 66 LKKTLQVSNLSPLLTVEQLRQLFSFCGTV----VECTIT-----DSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEM 136 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G~V----~~v~i~-----~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~ 136 (682)
...+|||+|||+.+|+++|++||..||.| ..|.|+ .++|||||+|.+.++|+.||.+|+..|.|+.|.|..
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~~ 101 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFR 101 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 46899999999999999999999999976 577776 357999999999999999996699999999999987
Q ss_pred cc
Q 005703 137 AK 138 (682)
Q Consensus 137 a~ 138 (682)
+.
T Consensus 102 a~ 103 (123)
T 2dha_A 102 ST 103 (123)
T ss_dssp EC
T ss_pred CC
Confidence 65
No 161
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.48 E-value=9.8e-14 Score=131.45 Aligned_cols=93 Identities=24% Similarity=0.384 Sum_probs=77.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEec------CCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecc
Q 005703 66 LKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITD------SKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAK 138 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~------~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~ 138 (682)
..++|||+|||+.+|+++|.++|..||.|..|.|+. .+|||||+|.+.++|+.|| .|||..|.|+.|.|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 468999999999999999999999999999999872 4689999999999999999 799999999999999998
Q ss_pred cCCCCCCCCCCCccCCchhhhh
Q 005703 139 SFPQKPSHLNSSLAGSSLPMMM 160 (682)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~P~~~ 160 (682)
+..... ....+...++|...
T Consensus 82 ~~~~~~--~~~~l~v~nl~~~~ 101 (168)
T 1b7f_A 82 PGGESI--KDTNLYVTNLPRTI 101 (168)
T ss_dssp CCSSTT--TTCEEEEESCCTTC
T ss_pred CCcccC--CCCCEEEeCCCCCC
Confidence 654322 12334445555443
No 162
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.48 E-value=6.4e-14 Score=139.77 Aligned_cols=74 Identities=24% Similarity=0.401 Sum_probs=69.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe----cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEeccc
Q 005703 66 LKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT----DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKS 139 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~----~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~ 139 (682)
...+|||+|||+.+|+++|.++|..||.|+.|.|+ ..+|||||+|.+.++|+.|| .|||+.|+|+.|.|.|+..
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 35799999999999999999999999999999997 35799999999999999999 8999999999999999875
No 163
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.46 E-value=1.5e-13 Score=129.55 Aligned_cols=76 Identities=21% Similarity=0.404 Sum_probs=70.1
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEE
Q 005703 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVE 135 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~ 135 (682)
......+|||+|||+.+|+++|.++|..||.|..|.|+ ..+|||||+|.+.++|..|| .|||..|+|+.|.|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 44567899999999999999999999999999999997 24689999999999999999 799999999999999
Q ss_pred ecc
Q 005703 136 MAK 138 (682)
Q Consensus 136 ~a~ 138 (682)
||+
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 986
No 164
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.45 E-value=2.2e-13 Score=128.54 Aligned_cols=92 Identities=27% Similarity=0.480 Sum_probs=75.9
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEec------CCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEeccc
Q 005703 67 KKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITD------SKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKS 139 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~------~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~ 139 (682)
.++|||+|||+.+|+++|.++|..||.|..|.|+. .+|||||+|.+.++|+.|| .|||..|.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57999999999999999999999999999999973 3489999999999999999 7999999999999999876
Q ss_pred CCCCCCCCCCCccCCchhhhh
Q 005703 140 FPQKPSHLNSSLAGSSLPMMM 160 (682)
Q Consensus 140 ~~~~~~~~~~~~~~~~~P~~~ 160 (682)
..... ....+...++|...
T Consensus 82 ~~~~~--~~~~l~v~nl~~~~ 100 (167)
T 1fxl_A 82 SSASI--RDANLYVSGLPKTM 100 (167)
T ss_dssp CCGGG--TTCEEEEESCCTTC
T ss_pred CcccC--CCCcEEECCCCCcC
Confidence 43221 12234445555443
No 165
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.45 E-value=2e-13 Score=134.88 Aligned_cols=78 Identities=24% Similarity=0.449 Sum_probs=71.5
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEec------CCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEec
Q 005703 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITD------SKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMA 137 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~------~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a 137 (682)
...++|||+|||..+|+++|+++|..||.|..|.|+. .+|||||+|.+.++|..|| .|||..|+|+.|.|.|+
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 3468999999999999999999999999999999972 3789999999999999999 79999999999999999
Q ss_pred ccCCC
Q 005703 138 KSFPQ 142 (682)
Q Consensus 138 ~~~~~ 142 (682)
...+.
T Consensus 203 ~~~~~ 207 (216)
T 2qfj_A 203 VTPPM 207 (216)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 87643
No 166
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.45 E-value=1.4e-13 Score=133.97 Aligned_cols=78 Identities=29% Similarity=0.404 Sum_probs=70.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEec------CCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEec
Q 005703 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITD------SKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEMA 137 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~------~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~a 137 (682)
....++|||+|||+.+|+++|.++|..||.|..|.|+. .+|||||+|.+.++|+.||.++|..|.|+.|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA 89 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecc
Confidence 34578999999999999999999999999999999872 468999999999999999977999999999999998
Q ss_pred ccCC
Q 005703 138 KSFP 141 (682)
Q Consensus 138 ~~~~ 141 (682)
....
T Consensus 90 ~~~~ 93 (196)
T 1l3k_A 90 VSRE 93 (196)
T ss_dssp CC--
T ss_pred cCcc
Confidence 7643
No 167
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.44 E-value=1.1e-13 Score=131.11 Aligned_cols=75 Identities=16% Similarity=0.378 Sum_probs=69.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEeccc
Q 005703 66 LKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEMAKS 139 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~a~~ 139 (682)
...+|||+|||+.+|+++|.++|..||.|..|.|+ .++|||||+|.+.++|..||.|+|..|+|+.|.|.|+.+
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCC
Confidence 36799999999999999999999999999999987 246899999999999999999999999999999999976
Q ss_pred C
Q 005703 140 F 140 (682)
Q Consensus 140 ~ 140 (682)
.
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 168
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.44 E-value=2.7e-13 Score=136.70 Aligned_cols=78 Identities=31% Similarity=0.440 Sum_probs=71.9
Q ss_pred CCCCCCEEEEeCCCC-CCCHHHHHHHHhcCCCeEEEEEe-cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEeccc
Q 005703 63 ADALKKTLQVSNLSP-LLTVEQLRQLFSFCGTVVECTIT-DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKS 139 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~-~vteedL~~~F~~~G~V~~v~i~-~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~ 139 (682)
.....++|||+|||+ .+++++|+++|..||.|..|.|+ ..+|||||+|.+.++|+.|| .|||..|.|+.|.|.|+..
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 345689999999999 99999999999999999999998 44799999999999999999 7999999999999999975
Q ss_pred C
Q 005703 140 F 140 (682)
Q Consensus 140 ~ 140 (682)
.
T Consensus 110 ~ 110 (229)
T 2adc_A 110 Q 110 (229)
T ss_dssp C
T ss_pred c
Confidence 4
No 169
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.43 E-value=2.7e-13 Score=131.92 Aligned_cols=79 Identities=18% Similarity=0.242 Sum_probs=68.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEecc
Q 005703 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEMAK 138 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~a~ 138 (682)
...++|||+|||+.+|+++|+++|..||.|..|.|+ ..+|||||+|.+.++|..||.++|..|+|+.|.|.|+.
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecC
Confidence 346899999999999999999999999999999997 24789999999999999999768999999999999998
Q ss_pred cCCCC
Q 005703 139 SFPQK 143 (682)
Q Consensus 139 ~~~~~ 143 (682)
+....
T Consensus 182 ~k~~~ 186 (196)
T 1l3k_A 182 SKQEM 186 (196)
T ss_dssp -----
T ss_pred ChhHh
Confidence 76543
No 170
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.43 E-value=3.3e-13 Score=139.53 Aligned_cols=76 Identities=21% Similarity=0.306 Sum_probs=70.4
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecC-CCeEEEEeCCHHHHHHHH-HcCCceec-CceEEEEecc
Q 005703 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDS-KHFAYIEYSKPEEATAAL-ALNNMDVG-GRPLNVEMAK 138 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~-kg~aFVeF~s~e~A~~Al-~Lng~~l~-Gr~L~V~~a~ 138 (682)
.....++|||+|||..+|+++|+++|..||.|..|.|+.. +|||||+|.+.++|..|| .|||..|. |+.|.|.|++
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 3445789999999999999999999999999999999854 499999999999999999 79999999 9999999986
No 171
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.42 E-value=3.5e-13 Score=131.31 Aligned_cols=78 Identities=24% Similarity=0.382 Sum_probs=71.7
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEec------CCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEec
Q 005703 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITD------SKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMA 137 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~------~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a 137 (682)
...++|||+|||+.+++++|+++|..||.|..|.|.. .+|||||+|.+.++|+.|| .|||..|+|+.|.|.|+
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 5678999999999999999999999999999999972 3789999999999999999 79999999999999999
Q ss_pred ccCCC
Q 005703 138 KSFPQ 142 (682)
Q Consensus 138 ~~~~~ 142 (682)
.+...
T Consensus 192 ~~~~~ 196 (198)
T 2yh0_A 192 SVGAK 196 (198)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87543
No 172
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.42 E-value=4.1e-13 Score=138.16 Aligned_cols=77 Identities=26% Similarity=0.353 Sum_probs=72.3
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEeccc
Q 005703 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKS 139 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~ 139 (682)
.....++|||+|||+.+|+++|.++|..||.|..|.|...+|||||+|.+.++|..|| .|||..|.|+.|.|.|+..
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 3455689999999999999999999999999999999988999999999999999999 7999999999999999874
No 173
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.42 E-value=3e-13 Score=128.77 Aligned_cols=73 Identities=26% Similarity=0.419 Sum_probs=68.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEec------CCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEec
Q 005703 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITD------SKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMA 137 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~------~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a 137 (682)
....+|||+|||+.+|+++|.++|..||.|..|.|.. .+|||||+|.+.++|..|| .|||..|+|+.|.|.||
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 4478999999999999999999999999999999972 3689999999999999999 79999999999999987
No 174
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.41 E-value=5.5e-13 Score=137.93 Aligned_cols=79 Identities=19% Similarity=0.398 Sum_probs=72.0
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHH----HHHhcCCCeEEEEEe---cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEE
Q 005703 63 ADALKKTLQVSNLSPLLTVEQLR----QLFSFCGTVVECTIT---DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNV 134 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~----~~F~~~G~V~~v~i~---~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V 134 (682)
...+.++|||+|||+.+|+++|+ ++|..||.|..|.|+ ..+|||||+|.+.++|+.|| .|||..|.|+.|.|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 34568999999999999999966 999999999999987 46799999999999999999 89999999999999
Q ss_pred EecccCC
Q 005703 135 EMAKSFP 141 (682)
Q Consensus 135 ~~a~~~~ 141 (682)
.|+....
T Consensus 85 ~~a~~~~ 91 (282)
T 3pgw_A 85 QYAKTDS 91 (282)
T ss_pred EEeccCc
Confidence 9997544
No 175
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.41 E-value=5.2e-13 Score=127.14 Aligned_cols=94 Identities=24% Similarity=0.416 Sum_probs=78.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC----C-------CeEEEEEecCCCeEEEEeCCHHHHHHHHHcCCceecCceEEE
Q 005703 66 LKKTLQVSNLSPLLTVEQLRQLFSFC----G-------TVVECTITDSKHFAYIEYSKPEEATAALALNNMDVGGRPLNV 134 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~----G-------~V~~v~i~~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V 134 (682)
..++|||+|||+.+|+++|.++|..| | .|..+.+...+|||||+|.+.++|+.||.|||..|.|+.|.|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v 82 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKI 82 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHGGGTTCEETTEECEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHHHhCCcEecCceeee
Confidence 36899999999999999999999999 7 888999888899999999999999999999999999999999
Q ss_pred EecccCCCCCCCCCCCccCCchhhhhH
Q 005703 135 EMAKSFPQKPSHLNSSLAGSSLPMMMQ 161 (682)
Q Consensus 135 ~~a~~~~~~~~~~~~~~~~~~~P~~~~ 161 (682)
.++....... ....+...++|....
T Consensus 83 ~~~~~~~~~~--~~~~l~v~nlp~~~t 107 (172)
T 2g4b_A 83 RRPHDYQPLP--GAHKLFIGGLPNYLN 107 (172)
T ss_dssp ECCSSCCCCT--TTTCEEEECCCTTCC
T ss_pred cCCcccCCCC--CCCEEEEEcCCCcCC
Confidence 9877543322 233455556665443
No 176
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.41 E-value=4.4e-13 Score=132.49 Aligned_cols=74 Identities=9% Similarity=0.189 Sum_probs=67.9
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe-----cCCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEecccC
Q 005703 67 KKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT-----DSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEMAKSF 140 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~-----~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~a~~~ 140 (682)
.++|||+|||+.+|+++|.++|..||.|..|.|+ ..+|||||+|.+.++|+.||.+.+..|+|+.|.|.|+...
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHHH
Confidence 5899999999999999999999999999999997 3579999999999999999976677999999999998754
No 177
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.40 E-value=5.7e-13 Score=129.75 Aligned_cols=75 Identities=25% Similarity=0.494 Sum_probs=69.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC----C-------CeEEEEEecCCCeEEEEeCCHHHHHHHHHcCCceecCceEEE
Q 005703 66 LKKTLQVSNLSPLLTVEQLRQLFSFC----G-------TVVECTITDSKHFAYIEYSKPEEATAALALNNMDVGGRPLNV 134 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~----G-------~V~~v~i~~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V 134 (682)
..++|||+|||+.+|+++|.++|..| | .|..+.+...+|||||+|.+.++|+.||.|||..|.|+.|.|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~v 82 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKI 82 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHGGGTTEEETTEEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceEEE
Confidence 46899999999999999999999999 6 788888888899999999999999999999999999999999
Q ss_pred EecccC
Q 005703 135 EMAKSF 140 (682)
Q Consensus 135 ~~a~~~ 140 (682)
.++...
T Consensus 83 ~~~~~~ 88 (198)
T 2yh0_A 83 RRPHDY 88 (198)
T ss_dssp ECCCCC
T ss_pred eCCCCC
Confidence 998764
No 178
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.40 E-value=5.4e-13 Score=131.71 Aligned_cols=74 Identities=28% Similarity=0.477 Sum_probs=67.8
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEeccc
Q 005703 67 KKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKS 139 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~ 139 (682)
.++|||+|||+.+|+++|+++|..||.|..|.|+ ..+|||||+|.+.++|+.|| .|||..|.|+.|.|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 6799999999999999999999999999999996 26899999999999999999 6999999999999988764
Q ss_pred C
Q 005703 140 F 140 (682)
Q Consensus 140 ~ 140 (682)
.
T Consensus 108 ~ 108 (216)
T 2qfj_A 108 I 108 (216)
T ss_dssp C
T ss_pred c
Confidence 3
No 179
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.40 E-value=4.2e-13 Score=128.48 Aligned_cols=98 Identities=20% Similarity=0.302 Sum_probs=79.2
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEE-----EEEecCCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEec
Q 005703 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVE-----CTITDSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEMA 137 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~-----v~i~~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~a 137 (682)
.....++|||+|||+.+|+++|+++|..||.|.. +.....+|||||+|.+.++|+.||.|||..|.|+.|.|.++
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 88 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecC
Confidence 4556899999999999999999999999986544 22236789999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCccCCchhhhh
Q 005703 138 KSFPQKPSHLNSSLAGSSLPMMM 160 (682)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~P~~~ 160 (682)
.............+...++|..+
T Consensus 89 ~~~~~~~~~~~~~l~v~nlp~~~ 111 (175)
T 1fje_B 89 KGRDSKKVRAARTLLAKNLSFNI 111 (175)
T ss_dssp CCSSCSTTGGGGEEEEESCCSSC
T ss_pred CCccccccccCCEEEEeCCCCCC
Confidence 87655444334445556666544
No 180
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=3.2e-13 Score=121.80 Aligned_cols=71 Identities=15% Similarity=0.256 Sum_probs=59.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe---------cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEE
Q 005703 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT---------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNV 134 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~---------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V 134 (682)
...++|||+|||+.+|+++|+++|.+||.|. +.|+ ..+|||||+|.+.++|+.|| .|+ .|+|+.|.|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3578999999999999999999999999999 7665 23799999999999999999 773 366776666
Q ss_pred Eecc
Q 005703 135 EMAK 138 (682)
Q Consensus 135 ~~a~ 138 (682)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 5544
No 181
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.40 E-value=4.5e-13 Score=128.29 Aligned_cols=77 Identities=23% Similarity=0.300 Sum_probs=69.6
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe--cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEeccc
Q 005703 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT--DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKS 139 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~--~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~ 139 (682)
.....++|||+|||+.+|+++|+++|..||.|..| .. ..+|||||+|.+.++|..|| .|||..|+|+.|.|.|+.+
T Consensus 95 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 95 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCC
Confidence 34457899999999999999999999999999888 32 57899999999999999999 7999999999999999976
Q ss_pred C
Q 005703 140 F 140 (682)
Q Consensus 140 ~ 140 (682)
.
T Consensus 174 k 174 (175)
T 1fje_B 174 K 174 (175)
T ss_dssp C
T ss_pred C
Confidence 4
No 182
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=1.5e-12 Score=117.06 Aligned_cols=79 Identities=19% Similarity=0.256 Sum_probs=68.9
Q ss_pred CCCCCCEEEEeCCCCCCC-----------HHHHHHHHhcCCCeEEEEEe--cCCCeEEEEeCCHHHHHHHH-HcCCceec
Q 005703 63 ADALKKTLQVSNLSPLLT-----------VEQLRQLFSFCGTVVECTIT--DSKHFAYIEYSKPEEATAAL-ALNNMDVG 128 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vt-----------eedL~~~F~~~G~V~~v~i~--~~kg~aFVeF~s~e~A~~Al-~Lng~~l~ 128 (682)
...+.++|+|.||..... +++|+++|.+||.|..|.|. ..+|||||+|.+.++|+.|| .|||..|+
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 345688999999954332 58999999999999999776 46899999999999999999 89999999
Q ss_pred CceEEEEecccCC
Q 005703 129 GRPLNVEMAKSFP 141 (682)
Q Consensus 129 Gr~L~V~~a~~~~ 141 (682)
|+.|.|.|+.+..
T Consensus 91 gr~l~v~~a~~~~ 103 (112)
T 2dit_A 91 GRQITAQAWDGTT 103 (112)
T ss_dssp TEECEEEECCSCC
T ss_pred CcEEEEEEeCCCC
Confidence 9999999987654
No 183
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.39 E-value=1.1e-12 Score=124.13 Aligned_cols=75 Identities=36% Similarity=0.550 Sum_probs=68.4
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEec------CCCeEEEEeCCHHHHHHHH-HcCCceecC--ceEE
Q 005703 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITD------SKHFAYIEYSKPEEATAAL-ALNNMDVGG--RPLN 133 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~------~kg~aFVeF~s~e~A~~Al-~Lng~~l~G--r~L~ 133 (682)
......+|||+|||..+++++|.++|..||.|..|.|.. .+|||||+|.+.++|..|| .|||..|.| +.|.
T Consensus 85 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~ 164 (168)
T 1b7f_A 85 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLS 164 (168)
T ss_dssp STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCE
T ss_pred ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEE
Confidence 345678999999999999999999999999999999872 3589999999999999999 799999988 9999
Q ss_pred EEec
Q 005703 134 VEMA 137 (682)
Q Consensus 134 V~~a 137 (682)
|.||
T Consensus 165 V~~A 168 (168)
T 1b7f_A 165 VRLA 168 (168)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9986
No 184
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.39 E-value=4.4e-13 Score=131.25 Aligned_cols=74 Identities=30% Similarity=0.461 Sum_probs=69.5
Q ss_pred CCEEEEeCCCC-CCCHHHHHHHHhcCCCeEEEEEe-cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecccC
Q 005703 67 KKTLQVSNLSP-LLTVEQLRQLFSFCGTVVECTIT-DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKSF 140 (682)
Q Consensus 67 ~~tL~V~NLp~-~vteedL~~~F~~~G~V~~v~i~-~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~~ 140 (682)
.++|||+|||+ .+++++|.++|..||.|..|.|+ ..+|||||+|.+.++|+.|| .|||..|.|+.|.|.|+...
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 58999999999 99999999999999999999998 44799999999999999999 79999999999999998754
No 185
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.38 E-value=6.9e-13 Score=126.27 Aligned_cols=74 Identities=24% Similarity=0.418 Sum_probs=67.2
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEec-----CCCeEEEEeCCHHHHHHHH-HcCCceec---CceEEEE
Q 005703 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITD-----SKHFAYIEYSKPEEATAAL-ALNNMDVG---GRPLNVE 135 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~-----~kg~aFVeF~s~e~A~~Al-~Lng~~l~---Gr~L~V~ 135 (682)
....+|||+|||+.+|+++|+++|..||.|..|.|+. ++|||||+|.+.++|..|| .|||..|. |+.|.|.
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 3578999999999999999999999999999999972 4789999999999999999 89998776 4999999
Q ss_pred ecc
Q 005703 136 MAK 138 (682)
Q Consensus 136 ~a~ 138 (682)
||.
T Consensus 173 ~ad 175 (175)
T 3nmr_A 173 FAD 175 (175)
T ss_dssp ECC
T ss_pred ecC
Confidence 973
No 186
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.38 E-value=1.2e-12 Score=132.05 Aligned_cols=76 Identities=36% Similarity=0.482 Sum_probs=70.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCC-CeEEEEEe-cCCCeEEEEeCCHHHHHHHH-HcCCceec-CceEEEEecccC
Q 005703 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCG-TVVECTIT-DSKHFAYIEYSKPEEATAAL-ALNNMDVG-GRPLNVEMAKSF 140 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G-~V~~v~i~-~~kg~aFVeF~s~e~A~~Al-~Lng~~l~-Gr~L~V~~a~~~ 140 (682)
.+.++|||+|||+.+++++|+++|..|| .|..|.|+ ..+|||||+|.+.++|..|| .|||..|. |+.|.|.|+++.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 3468999999999999999999999999 99999995 57899999999999999999 79999999 999999998753
No 187
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.38 E-value=7.5e-13 Score=126.00 Aligned_cols=95 Identities=22% Similarity=0.256 Sum_probs=75.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe--------cCCCeEEEEeCCHHHHHHHH-HcCCceec---CceEE
Q 005703 66 LKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT--------DSKHFAYIEYSKPEEATAAL-ALNNMDVG---GRPLN 133 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~--------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~---Gr~L~ 133 (682)
..++|||+|||+.+|+++|.++|..||.|..|.|+ ..+|||||+|.+.++|+.|| .|||..|. ++.|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 36799999999999999999999999999999987 24689999999999999999 79998876 57888
Q ss_pred EEecccCCCCCCCCCCCccCCchhhhhH
Q 005703 134 VEMAKSFPQKPSHLNSSLAGSSLPMMMQ 161 (682)
Q Consensus 134 V~~a~~~~~~~~~~~~~~~~~~~P~~~~ 161 (682)
|.++........ ....+...++|....
T Consensus 82 ~~~~~~~~~~~~-~~~~l~v~nl~~~~t 108 (175)
T 3nmr_A 82 MKPADSEKNNAV-EDRKLFIGMISKKCT 108 (175)
T ss_dssp EEECGGGCCSCG-GGSEEEEESCCTTCC
T ss_pred EccccccccccC-CCCeEEEcCCCCcCC
Confidence 888776543321 223345556655433
No 188
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.38 E-value=1e-12 Score=128.54 Aligned_cols=76 Identities=36% Similarity=0.482 Sum_probs=70.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCC-CeEEEEEe-cCCCeEEEEeCCHHHHHHHH-HcCCceec-CceEEEEecccC
Q 005703 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCG-TVVECTIT-DSKHFAYIEYSKPEEATAAL-ALNNMDVG-GRPLNVEMAKSF 140 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G-~V~~v~i~-~~kg~aFVeF~s~e~A~~Al-~Lng~~l~-Gr~L~V~~a~~~ 140 (682)
.+.++|||+|||..+++++|.++|..|| .|..|.|+ ..+|||||+|.+.++|..|| .|||..|+ |+.|.|.|+++.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 4578999999999999999999999999 99999995 57899999999999999999 79999999 999999998753
No 189
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.37 E-value=1.8e-12 Score=115.76 Aligned_cols=75 Identities=20% Similarity=0.247 Sum_probs=66.4
Q ss_pred CCCCEEEEeCCCC-----CCCHHHHHHHHhcCCCeEEEEEec-------CCCeEEEEeCCHHHHHHHH-HcCCceecCce
Q 005703 65 ALKKTLQVSNLSP-----LLTVEQLRQLFSFCGTVVECTITD-------SKHFAYIEYSKPEEATAAL-ALNNMDVGGRP 131 (682)
Q Consensus 65 ~~~~tL~V~NLp~-----~vteedL~~~F~~~G~V~~v~i~~-------~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~ 131 (682)
.+.++|+|.||.. .-++++|+++|++||.|..|.|+. ++|||||+|.+.++|+.|+ .|||..|+|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4578999999962 237899999999999999999972 4799999999999999999 89999999999
Q ss_pred EEEEeccc
Q 005703 132 LNVEMAKS 139 (682)
Q Consensus 132 L~V~~a~~ 139 (682)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999865
No 190
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.36 E-value=1.3e-12 Score=123.29 Aligned_cols=74 Identities=31% Similarity=0.450 Sum_probs=66.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEec------CCCeEEEEeCCHHHHHHHH-HcCCceecCce--EEE
Q 005703 64 DALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITD------SKHFAYIEYSKPEEATAAL-ALNNMDVGGRP--LNV 134 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~------~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~--L~V 134 (682)
.....+|||+|||+.+++++|.++|..||.|..|.|.. .+|||||+|.+.++|..|| .|||..|.|+. |.|
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 34578999999999999999999999999999999872 3689999999999999999 79999999965 888
Q ss_pred Eec
Q 005703 135 EMA 137 (682)
Q Consensus 135 ~~a 137 (682)
.||
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 191
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.35 E-value=8.5e-13 Score=121.30 Aligned_cols=73 Identities=15% Similarity=0.149 Sum_probs=63.0
Q ss_pred CCEEEEeCC----CCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCC----HHH----HHHHHH---cCCc
Q 005703 67 KKTLQVSNL----SPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSK----PEE----ATAALA---LNNM 125 (682)
Q Consensus 67 ~~tL~V~NL----p~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s----~e~----A~~Al~---Lng~ 125 (682)
.+.|||+|| |+.+++++|++||..||+|..|.|+ .++|||||+|.+ .++ |..||. |||.
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 478999999 9999999999999999999999997 468999999996 333 677763 7999
Q ss_pred eecCceEEEEeccc
Q 005703 126 DVGGRPLNVEMAKS 139 (682)
Q Consensus 126 ~l~Gr~L~V~~a~~ 139 (682)
.|+|+.|.|.+...
T Consensus 82 ~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 82 FIMGFKFEVILNKH 95 (136)
T ss_dssp EETTEEEEEEECCT
T ss_pred eecCcEEEEEECcc
Confidence 99999999997653
No 192
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.33 E-value=1.6e-12 Score=123.04 Aligned_cols=73 Identities=21% Similarity=0.341 Sum_probs=65.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe------cCCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEeccc
Q 005703 66 LKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT------DSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEMAKS 139 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~------~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~a~~ 139 (682)
..++|||+|||+.+|+++|.++|..||.|..|.|+ .++|||||+|.+.++|+.||. ++..|+|+.|.|.++..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH-SCCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh-cccccCCeEcccccccc
Confidence 36799999999999999999999999999999987 356999999999999999996 36799999999988764
No 193
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.31 E-value=4.5e-12 Score=131.15 Aligned_cols=72 Identities=21% Similarity=0.319 Sum_probs=68.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecc
Q 005703 66 LKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAK 138 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~ 138 (682)
..++|||+|||+.+|+++|.++|..|| |..|.|...+|||||+|.+.++|+.|| .|||..|.|+.|.|.|+.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 93 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP 93 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC
Confidence 378999999999999999999999999 999999888999999999999999999 899999999999999865
No 194
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.31 E-value=2.6e-12 Score=133.53 Aligned_cols=76 Identities=24% Similarity=0.381 Sum_probs=67.8
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEec----CCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEecc
Q 005703 63 ADALKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITD----SKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEMAK 138 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~----~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~a~ 138 (682)
.+...++|||+|||+.+|+++|.+||..||.|..|.|+. .+|||||+|.+.++|+.||.|||..|.|+.|.|.++.
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~ 116 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLT 116 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEECC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEECC
Confidence 445689999999999999999999999999999999973 5799999999999999999999999999999999874
No 195
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.30 E-value=2.3e-12 Score=128.47 Aligned_cols=73 Identities=15% Similarity=0.218 Sum_probs=65.2
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCe--EEEEEec----CCCeEEEEeCCHHHHHHHH-HcCCceecCc----eEE
Q 005703 65 ALKKTLQVSNLSPLLTVEQLRQLFSFCGTV--VECTITD----SKHFAYIEYSKPEEATAAL-ALNNMDVGGR----PLN 133 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~G~V--~~v~i~~----~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr----~L~ 133 (682)
.+..+|||+|||+.+|+++|+++|.+||.| ..|.|.. .+|||||+|.+.++|..|| .|||+.|.|. +|.
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~ 200 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYT 200 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceE
Confidence 456799999999999999999999999999 8888873 3589999999999999999 8999999985 677
Q ss_pred EEec
Q 005703 134 VEMA 137 (682)
Q Consensus 134 V~~a 137 (682)
|.||
T Consensus 201 vk~~ 204 (205)
T 3tyt_A 201 LKLC 204 (205)
T ss_dssp CEEE
T ss_pred EEec
Confidence 7765
No 196
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.30 E-value=3.7e-12 Score=132.29 Aligned_cols=78 Identities=24% Similarity=0.364 Sum_probs=71.1
Q ss_pred CCCCCCEEEEeCCCCC-CCHHHHHHHHhcCCCeEEEEEec-------CCCeEEEEeCCHHHHHHHHHcCCceecCceEEE
Q 005703 63 ADALKKTLQVSNLSPL-LTVEQLRQLFSFCGTVVECTITD-------SKHFAYIEYSKPEEATAALALNNMDVGGRPLNV 134 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~-vteedL~~~F~~~G~V~~v~i~~-------~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V 134 (682)
.....++|||+|||+. +|+++|.++|..||.|..|.|+. .+|||||+|.+.++|..||.|||..|+|+.|.|
T Consensus 206 ~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 206 ATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISV 285 (292)
T ss_dssp -CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEE
T ss_pred cCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHHHhcCCEECCcEEEE
Confidence 3445789999999999 99999999999999999999962 368999999999999999999999999999999
Q ss_pred EecccC
Q 005703 135 EMAKSF 140 (682)
Q Consensus 135 ~~a~~~ 140 (682)
.|+.+.
T Consensus 286 ~~a~~k 291 (292)
T 2ghp_A 286 SLADKK 291 (292)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999864
No 197
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.29 E-value=5.3e-12 Score=130.65 Aligned_cols=80 Identities=28% Similarity=0.363 Sum_probs=72.0
Q ss_pred CCCCCCEEEEeCCCCCC-CHHHHHHHHhcCCCeEEEEEec-----CCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEE
Q 005703 63 ADALKKTLQVSNLSPLL-TVEQLRQLFSFCGTVVECTITD-----SKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVE 135 (682)
Q Consensus 63 ~~~~~~tL~V~NLp~~v-teedL~~~F~~~G~V~~v~i~~-----~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~ 135 (682)
.....++|||+|||+.+ |+++|.++|..||.|..|.|+. .+|||||+|.+.++|..|| .|||..|+|+.|.|.
T Consensus 180 ~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 259 (284)
T 3smz_A 180 ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVS 259 (284)
T ss_dssp TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEE
Confidence 34567899999999995 9999999999999999999873 4789999999999999999 799999999999999
Q ss_pred ecccCCC
Q 005703 136 MAKSFPQ 142 (682)
Q Consensus 136 ~a~~~~~ 142 (682)
|+.+...
T Consensus 260 ~a~~~~~ 266 (284)
T 3smz_A 260 FCAPGPP 266 (284)
T ss_dssp ECCSSSC
T ss_pred EecCCCc
Confidence 9986543
No 198
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.27 E-value=7.1e-12 Score=134.17 Aligned_cols=76 Identities=25% Similarity=0.406 Sum_probs=67.5
Q ss_pred CCCCCCEEEEeC--CCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCceec---Cc--eEEE
Q 005703 63 ADALKKTLQVSN--LSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDVG---GR--PLNV 134 (682)
Q Consensus 63 ~~~~~~tL~V~N--Lp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l~---Gr--~L~V 134 (682)
...+..+||||| |++.+|+++|+++|++||+|..|.|...+|||||+|.+.++|+.|| .|||.+|. |+ .|.|
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~ 93 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 93 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEE
Confidence 356788999999 5789999999999999999999999888999999999999999999 89999884 44 5777
Q ss_pred Eecc
Q 005703 135 EMAK 138 (682)
Q Consensus 135 ~~a~ 138 (682)
.|+.
T Consensus 94 ~~~~ 97 (345)
T 3tht_A 94 NFVE 97 (345)
T ss_dssp EECS
T ss_pred EEee
Confidence 7774
No 199
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.26 E-value=6.4e-11 Score=121.74 Aligned_cols=76 Identities=29% Similarity=0.374 Sum_probs=67.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe-----cCCCeEEEEeCCHHHHHHHH-HcC-Cceec---CceEEEE
Q 005703 66 LKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT-----DSKHFAYIEYSKPEEATAAL-ALN-NMDVG---GRPLNVE 135 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~-----~~kg~aFVeF~s~e~A~~Al-~Ln-g~~l~---Gr~L~V~ 135 (682)
...+|||+|||+.+|+++|.++|..||.|..|.|+ ..+|||||+|.+.++|..|| .|| |..+. |+.|.|.
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~ 174 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVE 174 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEe
Confidence 46899999999999999999999999999999987 24799999999999999999 784 55554 8999999
Q ss_pred ecccCC
Q 005703 136 MAKSFP 141 (682)
Q Consensus 136 ~a~~~~ 141 (682)
++....
T Consensus 175 ~~~~~~ 180 (261)
T 3sde_A 175 PMEQFD 180 (261)
T ss_dssp ECCCEE
T ss_pred eccccC
Confidence 987643
No 200
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=3.2e-11 Score=106.76 Aligned_cols=75 Identities=17% Similarity=0.225 Sum_probs=63.4
Q ss_pred CCEEEEeCCC-------CCCCHHHHHHHHhcCCCeEEEEEe-cCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEec
Q 005703 67 KKTLQVSNLS-------PLLTVEQLRQLFSFCGTVVECTIT-DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMA 137 (682)
Q Consensus 67 ~~tL~V~NLp-------~~vteedL~~~F~~~G~V~~v~i~-~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a 137 (682)
...|.|.-.. ..+|+++|+++|.+||+|..|.|+ ..+|||||+|.+.++|+.|| .+++ +.|+.|.|.|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a 87 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWL 87 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECS
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEc
Confidence 5566666443 468999999999999999999998 67899999999999999999 5544 67999999999
Q ss_pred ccCCCC
Q 005703 138 KSFPQK 143 (682)
Q Consensus 138 ~~~~~~ 143 (682)
......
T Consensus 88 ~~~~~~ 93 (100)
T 2d9o_A 88 EGQPQD 93 (100)
T ss_dssp SCCCCC
T ss_pred cCCCCC
Confidence 876543
No 201
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.23 E-value=2.2e-11 Score=108.70 Aligned_cols=75 Identities=19% Similarity=0.222 Sum_probs=65.0
Q ss_pred CCCCEEEEeCC--CCCCC--------HHHHHHHHhcCCCeEEEEEec--------CCCeEEEEeCCHHHHHHHH-HcCCc
Q 005703 65 ALKKTLQVSNL--SPLLT--------VEQLRQLFSFCGTVVECTITD--------SKHFAYIEYSKPEEATAAL-ALNNM 125 (682)
Q Consensus 65 ~~~~tL~V~NL--p~~vt--------eedL~~~F~~~G~V~~v~i~~--------~kg~aFVeF~s~e~A~~Al-~Lng~ 125 (682)
.+.++|+|.|| +..+. +++|+++|++||.|..|.|+. .+|||||+|.+.++|..|| .|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35789999998 33332 379999999999999999972 4799999999999999999 89999
Q ss_pred eecCceEEEEeccc
Q 005703 126 DVGGRPLNVEMAKS 139 (682)
Q Consensus 126 ~l~Gr~L~V~~a~~ 139 (682)
.|+|+.|.|.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998754
No 202
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.19 E-value=6.6e-12 Score=111.83 Aligned_cols=67 Identities=22% Similarity=0.420 Sum_probs=58.7
Q ss_pred EEeCCCCCCCHHHHHHHH------------hcCCCeEEEEEec-----CCCeEEEEeCCHHHHHHHH-HcCCceecCceE
Q 005703 71 QVSNLSPLLTVEQLRQLF------------SFCGTVVECTITD-----SKHFAYIEYSKPEEATAAL-ALNNMDVGGRPL 132 (682)
Q Consensus 71 ~V~NLp~~vteedL~~~F------------~~~G~V~~v~i~~-----~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L 132 (682)
++.||+..+++++|+++| ++||.|..|.|+. ++|||||+|.+.++|+.|+ .|||..|+|+.|
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 367788888888877766 9999999999982 4799999999999999999 899999999999
Q ss_pred EEEec
Q 005703 133 NVEMA 137 (682)
Q Consensus 133 ~V~~a 137 (682)
.|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 203
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.16 E-value=7.3e-11 Score=107.62 Aligned_cols=74 Identities=19% Similarity=0.167 Sum_probs=64.1
Q ss_pred CCCEEEEeCCCC--C---CCHHHHHHHHhcCCCeEEEEEec----------CCCeEEEEeCCHHHHHHHH-HcCCceecC
Q 005703 66 LKKTLQVSNLSP--L---LTVEQLRQLFSFCGTVVECTITD----------SKHFAYIEYSKPEEATAAL-ALNNMDVGG 129 (682)
Q Consensus 66 ~~~tL~V~NLp~--~---vteedL~~~F~~~G~V~~v~i~~----------~kg~aFVeF~s~e~A~~Al-~Lng~~l~G 129 (682)
+.++|+|.||-. . -.++||+++|++||.|..|.|+. .+|||||+|.+.++|..|| .|||..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 378999999942 2 23689999999999999999972 2389999999999999999 899999999
Q ss_pred ceEEEEeccc
Q 005703 130 RPLNVEMAKS 139 (682)
Q Consensus 130 r~L~V~~a~~ 139 (682)
+.|.|.|+..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998764
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.15 E-value=1.1e-10 Score=105.71 Aligned_cols=74 Identities=18% Similarity=0.201 Sum_probs=64.0
Q ss_pred CCCEEEEeCCCCCCC----------HHHHHHHHhcCCCeEEEEEec--CCCeEEEEeCCHHHHHHHH-HcCCceecCceE
Q 005703 66 LKKTLQVSNLSPLLT----------VEQLRQLFSFCGTVVECTITD--SKHFAYIEYSKPEEATAAL-ALNNMDVGGRPL 132 (682)
Q Consensus 66 ~~~tL~V~NLp~~vt----------eedL~~~F~~~G~V~~v~i~~--~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L 132 (682)
+.++|+|.||-.... ++||+++|++||.|..|.|.. .+|||||+|.+.++|+.|| .|||..|+|+.|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i 85 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI 85 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 577899999843221 258899999999999999973 4799999999999999999 899999999999
Q ss_pred EEEeccc
Q 005703 133 NVEMAKS 139 (682)
Q Consensus 133 ~V~~a~~ 139 (682)
.|.|+..
T Consensus 86 ~v~~~~~ 92 (114)
T 3s6e_A 86 TAAYVPL 92 (114)
T ss_dssp EEEEECH
T ss_pred EEEEEcH
Confidence 9999863
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=2.9e-10 Score=103.85 Aligned_cols=76 Identities=18% Similarity=0.179 Sum_probs=68.0
Q ss_pred CCCCCEEEEeCCCCC-CCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCC-HHHHHHHH-HcC--CceecCceEEEEecc
Q 005703 64 DALKKTLQVSNLSPL-LTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSK-PEEATAAL-ALN--NMDVGGRPLNVEMAK 138 (682)
Q Consensus 64 ~~~~~tL~V~NLp~~-vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s-~e~A~~Al-~Ln--g~~l~Gr~L~V~~a~ 138 (682)
-..+..|||+||+.. +++++|+++|..||+|.+|.|.....+|||.|.+ ..+|..|| .|| |..|+|..+.|++..
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLE 94 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECC
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECC
Confidence 346889999999999 9999999999999999999999777799999999 89999999 784 789999988887655
Q ss_pred c
Q 005703 139 S 139 (682)
Q Consensus 139 ~ 139 (682)
.
T Consensus 95 G 95 (121)
T 1owx_A 95 G 95 (121)
T ss_dssp H
T ss_pred C
Confidence 3
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.98 E-value=1.2e-09 Score=94.30 Aligned_cols=74 Identities=19% Similarity=0.218 Sum_probs=62.6
Q ss_pred CCCEEEEeCCCC----CCCH----HHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEec
Q 005703 66 LKKTLQVSNLSP----LLTV----EQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEMA 137 (682)
Q Consensus 66 ~~~tL~V~NLp~----~vte----edL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~a 137 (682)
+.-||+|..++. .+.. .+|.+.|.+||+|+.|+|. .+.+||+|.+.++|.+||.|||+.|+|+.|+|.++
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~--~d~~fVtF~d~~sAlaAi~mnG~~v~Gr~LkV~lk 83 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFV--EDKMWVTFLEGSSALNVLSLNGKELLNRTITIALK 83 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEEC--SSSEEEEESSHHHHHHGGGGTTCEETTEEEEEEEC
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEe--cCCEEEEECChHHHHHHHhcCCeEeCCeEEEEEeC
Confidence 456888887662 2323 6799999999999999998 45699999999999999999999999999999998
Q ss_pred ccCC
Q 005703 138 KSFP 141 (682)
Q Consensus 138 ~~~~ 141 (682)
.+..
T Consensus 84 t~dW 87 (91)
T 2dnr_A 84 SPSG 87 (91)
T ss_dssp CCSS
T ss_pred CCCc
Confidence 8643
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.69 E-value=1.4e-08 Score=88.15 Aligned_cols=72 Identities=24% Similarity=0.361 Sum_probs=60.5
Q ss_pred CCCCEEEEeCCCCC------CCH---HHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHHHcCCceecCceEEEE
Q 005703 65 ALKKTLQVSNLSPL------LTV---EQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVE 135 (682)
Q Consensus 65 ~~~~tL~V~NLp~~------vte---edL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~ 135 (682)
++.-||+|..++.. ..+ .+|.+.|.+||+|+.|+|... -+||+|.+.++|.+||.|||+.|+|+.|+|.
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d--~~fVtF~d~~sAl~AI~ldG~~v~Gr~L~V~ 90 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG--QMLVTFADSHSALSVLDVDGMKVKGRAVKIS 90 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT--EEEEECSCSHHHHHHHHGGGSEETTEEEEEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC--cEEEEEcChHHHHHHHhcCCeeeCCeEEEEe
Confidence 34679999888632 232 569999999999999999833 3999999999999999999999999999998
Q ss_pred ecc
Q 005703 136 MAK 138 (682)
Q Consensus 136 ~a~ 138 (682)
+-.
T Consensus 91 ~k~ 93 (95)
T 1ufw_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred ccC
Confidence 643
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.50 E-value=2.6e-07 Score=92.27 Aligned_cols=72 Identities=19% Similarity=0.193 Sum_probs=60.2
Q ss_pred CEEEEeCCC-----CCCCHHHHHHHHhcCCCeEEEEEe----------cCCCeEEEEeCCHHHHHHHH-HcCCceecCce
Q 005703 68 KTLQVSNLS-----PLLTVEQLRQLFSFCGTVVECTIT----------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGRP 131 (682)
Q Consensus 68 ~tL~V~NLp-----~~vteedL~~~F~~~G~V~~v~i~----------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~ 131 (682)
..|.+.|+- ..-.+++|.+.|.+||.|..|.|+ ..+||+||+|.+.++|..|| .|||..|+|+.
T Consensus 125 ~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~ 204 (222)
T 3dxb_A 125 TVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRK 204 (222)
T ss_dssp SEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred ccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeE
Confidence 445555543 234568999999999999999996 35689999999999999999 89999999999
Q ss_pred EEEEeccc
Q 005703 132 LNVEMAKS 139 (682)
Q Consensus 132 L~V~~a~~ 139 (682)
|.|.++..
T Consensus 205 i~~~~~~~ 212 (222)
T 3dxb_A 205 VVAEVYDQ 212 (222)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99998753
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.46 E-value=4.3e-07 Score=80.48 Aligned_cols=71 Identities=15% Similarity=0.137 Sum_probs=66.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-----CCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEE
Q 005703 65 ALKKTLQVSNLSPLLTVEQLRQLFSFC-----GTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVE 135 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~-----G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~ 135 (682)
+..++|-|-|||..|+...|..|+..| |.|+.|.|...-+-|+|+|.+...|.+|. +|||.+|.|+.|+|.
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 347899999999999999999999999 99999999977888999999999999999 999999999999995
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.20 E-value=5e-06 Score=73.32 Aligned_cols=78 Identities=15% Similarity=0.140 Sum_probs=67.0
Q ss_pred CCCEEEEeCCCCCC-C----HHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEeccc
Q 005703 66 LKKTLQVSNLSPLL-T----VEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAKS 139 (682)
Q Consensus 66 ~~~tL~V~NLp~~v-t----eedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~~ 139 (682)
..++|+|+||+..| . .+.|+++|..|+++....+..+-.=..|.|.+.++|..|- .|+++.|.|..|+|.++.+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 57899999998755 2 2578999999999998888876667899999999999999 8999999999999999986
Q ss_pred CCCC
Q 005703 140 FPQK 143 (682)
Q Consensus 140 ~~~~ 143 (682)
....
T Consensus 84 ~~~~ 87 (104)
T 1wey_A 84 LHIG 87 (104)
T ss_dssp SSCC
T ss_pred CCCc
Confidence 5443
No 211
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=97.73 E-value=8.1e-06 Score=90.22 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=23.8
Q ss_pred HHHHHhcCCCeEEEEEe--------cCCCeE-----EEEeCCHHHHHHHH
Q 005703 84 LRQLFSFCGTVVECTIT--------DSKHFA-----YIEYSKPEEATAAL 120 (682)
Q Consensus 84 L~~~F~~~G~V~~v~i~--------~~kg~a-----FVeF~s~e~A~~Al 120 (682)
|..||.+||.|..|..+ ...+|+ ||+|....++..++
T Consensus 9 L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~ 58 (437)
T 3pgw_S 9 LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPT 58 (437)
T ss_pred HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccc
Confidence 67899999998887322 123344 77787765555444
No 212
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.72 E-value=0.00047 Score=60.59 Aligned_cols=74 Identities=20% Similarity=0.257 Sum_probs=64.2
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-----CCeEEEEEecCCCeEEEEeCCHHHHHHHHHcCCceecCceEEEEeccc
Q 005703 65 ALKKTLQVSNLSPLLTVEQLRQLFSFC-----GTVVECTITDSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEMAKS 139 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteedL~~~F~~~-----G~V~~v~i~~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~L~V~~a~~ 139 (682)
...++|.|.|||+.+.++.|.-||+.- |+|..|.... +-|+|+|.+.+.|+..|.-..+.|+|..|.|....+
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~~~ 83 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQADHELHGAQLSLRPAPP 83 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEECCC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcCCC
Confidence 357899999999999999999999972 6899998874 889999999999999987778899999999976554
Q ss_pred C
Q 005703 140 F 140 (682)
Q Consensus 140 ~ 140 (682)
.
T Consensus 84 ~ 84 (104)
T 2dhx_A 84 R 84 (104)
T ss_dssp C
T ss_pred C
Confidence 3
No 213
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.54 E-value=0.00031 Score=63.50 Aligned_cols=72 Identities=14% Similarity=0.170 Sum_probs=62.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHHHcCCceecC-ceEEEEecc
Q 005703 66 LKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAALALNNMDVGG-RPLNVEMAK 138 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al~Lng~~l~G-r~L~V~~a~ 138 (682)
..+-|.|-++|+.. ...|..+|.+||+|+........++-.|.|.+..+|++||..||..|+| -.|-|.++.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECC
Confidence 36789999999875 5778899999999999988767899999999999999999999999985 667776653
No 214
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.09 E-value=0.0018 Score=55.85 Aligned_cols=62 Identities=18% Similarity=0.146 Sum_probs=52.7
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEec--------CCCeEEEEeCCHHHHHHHH-HcCCceecC
Q 005703 68 KTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITD--------SKHFAYIEYSKPEEATAAL-ALNNMDVGG 129 (682)
Q Consensus 68 ~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~--------~kg~aFVeF~s~e~A~~Al-~Lng~~l~G 129 (682)
++|.|.+||+.+||+++.+.++.++.+.....+. .-.-|||.|.+.+++..-. .++|+.|.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 5799999999999999999999999887766651 2246999999999998888 899998865
No 215
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.06 E-value=0.00046 Score=63.28 Aligned_cols=71 Identities=23% Similarity=0.286 Sum_probs=56.9
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEE-EEEe-------------------cCCCeEEEEeCCHHHHHHHHHcCCce
Q 005703 67 KKTLQVSNLSPLLTVEQLRQLFSFCGTVVE-CTIT-------------------DSKHFAYIEYSKPEEATAALALNNMD 126 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~~~G~V~~-v~i~-------------------~~kg~aFVeF~s~e~A~~Al~Lng~~ 126 (682)
..-|.|-++|+..+ ..|.++|.+||.|++ +.+. ...++..|+|.+..+|..||..||..
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 56788888987665 557789999999977 2111 14678899999999999999999999
Q ss_pred ecCceEEEEecc
Q 005703 127 VGGRPLNVEMAK 138 (682)
Q Consensus 127 l~Gr~L~V~~a~ 138 (682)
|+|..|-|.++.
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999988888764
No 216
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.31 E-value=0.015 Score=50.47 Aligned_cols=53 Identities=26% Similarity=0.397 Sum_probs=43.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-Hc
Q 005703 67 KKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-AL 122 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~L 122 (682)
...|+| ++|..+...||.++|..||.|. |.+++ -.-|||.|.+.+.|..|| .+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~Wid-DTsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWID-DTSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEE-TTEEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEc-CCeEEEEecCHHHHHHHHHhc
Confidence 456666 9999999999999999999543 44442 467999999999999999 55
No 217
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.19 E-value=0.0076 Score=52.47 Aligned_cols=72 Identities=21% Similarity=0.194 Sum_probs=53.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEe--------cCCCeEEEEeCCHHHHHHHH-HcCCceecCc-----eE
Q 005703 67 KKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTIT--------DSKHFAYIEYSKPEEATAAL-ALNNMDVGGR-----PL 132 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~--------~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr-----~L 132 (682)
.-.|.|..||+.+||+++.+.+..+-++.....+ ..-.-|||.|.+.+++..-. .++|..|.+. ..
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 4579999999999999988888776555433332 12246899999999999888 8999988653 34
Q ss_pred EEEecc
Q 005703 133 NVEMAK 138 (682)
Q Consensus 133 ~V~~a~ 138 (682)
.|++|.
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 556554
No 218
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.85 E-value=0.0087 Score=52.16 Aligned_cols=52 Identities=27% Similarity=0.424 Sum_probs=42.3
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcC
Q 005703 69 TLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALN 123 (682)
Q Consensus 69 tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Ln 123 (682)
.|+| ++|+.+.-.||.++|..||. ..|.+++ -.-|||.|.+.+.|..|| .+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fgg-v~I~Wid-DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGN-IQISWID-DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEE-TTEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCC-EEEEEEc-CCeEEEEecCHHHHHHHHHhcc
Confidence 4556 99999999999999999993 3444442 467999999999999999 554
No 219
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.55 E-value=0.0055 Score=67.77 Aligned_cols=61 Identities=11% Similarity=0.173 Sum_probs=45.1
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCC-CeEEEEeCCHHHHHHHHHcCCceec
Q 005703 67 KKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSK-HFAYIEYSKPEEATAALALNNMDVG 128 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~k-g~aFVeF~s~e~A~~Al~Lng~~l~ 128 (682)
.+.|||. ++..+++.+|.++|.+||.|..+.+...+ .||+|||.+.+++..++...++.+.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~~~~p~~ 114 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQNGTHTPXX 114 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHSSCCCCCC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHhccCCCcc
Confidence 5799997 79999999999999999999999998544 5999999999999877744343333
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=93.41 E-value=0.033 Score=51.45 Aligned_cols=38 Identities=18% Similarity=0.119 Sum_probs=35.0
Q ss_pred cCCCeEEEEeCCHHHHHHHH-Hc-CCceecCceEEEEeccc
Q 005703 101 DSKHFAYIEYSKPEEATAAL-AL-NNMDVGGRPLNVEMAKS 139 (682)
Q Consensus 101 ~~kg~aFVeF~s~e~A~~Al-~L-ng~~l~Gr~L~V~~a~~ 139 (682)
..+|++||+|.+.++|+.|| .| ||..|+| .|.|.++..
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 46899999999999999999 89 9999999 999998865
No 221
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=92.28 E-value=0.089 Score=48.75 Aligned_cols=25 Identities=16% Similarity=-0.007 Sum_probs=21.8
Q ss_pred cCCCeEEEEeCCHHHHHHHH-HcCCc
Q 005703 101 DSKHFAYIEYSKPEEATAAL-ALNNM 125 (682)
Q Consensus 101 ~~kg~aFVeF~s~e~A~~Al-~Lng~ 125 (682)
..+|||||+|.+.++|+.|| .+++.
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHhHHHHHHhhccc
Confidence 46899999999999999999 67653
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=82.84 E-value=2.1 Score=34.76 Aligned_cols=67 Identities=18% Similarity=0.220 Sum_probs=44.1
Q ss_pred EEEEeC-CCCCCCHHHHHHHHhcCC-----CeEEEEEecCCCeEEEEeCCHHHHHHHH-HcCCceecCceEEEEecc
Q 005703 69 TLQVSN-LSPLLTVEQLRQLFSFCG-----TVVECTITDSKHFAYIEYSKPEEATAAL-ALNNMDVGGRPLNVEMAK 138 (682)
Q Consensus 69 tL~V~N-Lp~~vteedL~~~F~~~G-----~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Lng~~l~Gr~L~V~~a~ 138 (682)
+|||.. --..+..-+|..+|..-+ .|-.|.|. ..|.||+.... .+..++ .|++..+.|+.|.|..+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~--d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM--DNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC--SSCEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe--CCcEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 567742 135778888888888655 45667776 67999998754 467777 899999999999998654
No 223
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=80.64 E-value=2.7 Score=46.96 Aligned_cols=54 Identities=24% Similarity=0.394 Sum_probs=43.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH-HcC
Q 005703 67 KKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL-ALN 123 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al-~Ln 123 (682)
...|+|+ +|..+...+|.++|..||.| .|.++ ....|||.|.+.+.|..+| +++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wi-ddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWI-DDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEEC-SSSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEE-cCCeEEEEECCHHHHHHHHHHHH
Confidence 3466666 98899999999999999954 44444 3567999999999999999 664
No 224
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=66.17 E-value=28 Score=29.53 Aligned_cols=53 Identities=13% Similarity=0.164 Sum_probs=46.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHH
Q 005703 66 LKKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAAL 120 (682)
Q Consensus 66 ~~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al 120 (682)
..+-|-|-|||..+-..++.-.....|---+|..+ .|.|.|.|.+.++...||
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi--dgqamirfqnsdeqrlai 63 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--DGQAMIRFQNSDEQRLAI 63 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--SSCEEEEESSHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--cCeeEEEecCChHHHHHH
Confidence 36778899999999999998888899988888877 688999999999999998
No 225
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=58.90 E-value=16 Score=34.76 Aligned_cols=56 Identities=13% Similarity=0.027 Sum_probs=39.0
Q ss_pred CEEEEeCCCC---------CCCHHHHHHHH--hcCCCeEEEEEe---cCCCeEEEEeC-CHHHHHHHHHcC
Q 005703 68 KTLQVSNLSP---------LLTVEQLRQLF--SFCGTVVECTIT---DSKHFAYIEYS-KPEEATAALALN 123 (682)
Q Consensus 68 ~tL~V~NLp~---------~vteedL~~~F--~~~G~V~~v~i~---~~kg~aFVeF~-s~e~A~~Al~Ln 123 (682)
-+++|.|+|. .....+|.+.| ..|..+.-..+. ...|+|+|+|. +......|+.|.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~fe 83 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLLFD 83 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHHHH
Confidence 3667778875 24457899977 899887765565 34578999997 555566666443
No 226
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=48.46 E-value=37 Score=26.24 Aligned_cols=59 Identities=12% Similarity=0.043 Sum_probs=44.9
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHHHcCCce
Q 005703 67 KKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAALALNNMD 126 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al~Lng~~ 126 (682)
..+|.|.|+.-.--...|...+.. ..|..+.+....+.+.|.|.+.++...||.--|+.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~~~~~i~~~i~~~Gy~ 64 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKEDVDKYIKAVEAAGYQ 64 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGGGHHHHHHHHHHTTCE
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEECCHHHHHHHHHHcCCc
Confidence 357889999866667889999999 88888888755677889998666777777544543
No 227
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=44.59 E-value=82 Score=23.19 Aligned_cols=59 Identities=15% Similarity=0.086 Sum_probs=41.8
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCC----HHHHHHHHHcCCce
Q 005703 68 KTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSK----PEEATAALALNNMD 126 (682)
Q Consensus 68 ~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s----~e~A~~Al~Lng~~ 126 (682)
.+|.|.|+.-..-...|...+.....|..+.+....+.+.|.|.. .+....+|.-.|+.
T Consensus 7 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~ 69 (71)
T 2l3m_A 7 LTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIEDQGYD 69 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTSCHHHHHHHHHHTTCE
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCC
Confidence 368888886444456788899988888888887667888998863 45556666434543
No 228
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=40.84 E-value=1e+02 Score=22.29 Aligned_cols=58 Identities=14% Similarity=0.143 Sum_probs=42.8
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCC----HHHHHHHHHcCCc
Q 005703 68 KTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSK----PEEATAALALNNM 125 (682)
Q Consensus 68 ~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s----~e~A~~Al~Lng~ 125 (682)
.+|.|.|+.-..-...|...+.....|..+.+....+.+.|.|.. .+....+|.-.|+
T Consensus 2 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~ 63 (68)
T 1cpz_A 2 QEFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGY 63 (68)
T ss_dssp CEEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHTTSS
T ss_pred EEEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCC
Confidence 368888887666667899999998889888887667889999863 4555556644454
No 229
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=40.63 E-value=1.1e+02 Score=22.52 Aligned_cols=57 Identities=18% Similarity=0.125 Sum_probs=42.1
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeC----CHHHHHHHHHcCCc
Q 005703 69 TLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYS----KPEEATAALALNNM 125 (682)
Q Consensus 69 tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~----s~e~A~~Al~Lng~ 125 (682)
+|.|.|+.-..-...|...+.....|..+.+....+.+.|.|. +.+....+|.-.|+
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~ 66 (72)
T 1osd_A 6 TLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADAGY 66 (72)
T ss_dssp EEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHHHTTC
T ss_pred EEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCC
Confidence 5778888766666789999999988988888766788999986 34555666643354
No 230
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=40.54 E-value=7.2 Score=33.81 Aligned_cols=19 Identities=16% Similarity=0.090 Sum_probs=0.0
Q ss_pred CCCCEEEEeCCCCCCCHHH
Q 005703 65 ALKKTLQVSNLSPLLTVEQ 83 (682)
Q Consensus 65 ~~~~tL~V~NLp~~vteed 83 (682)
...++|||+|||+.+|++-
T Consensus 95 ~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 95 KEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -------------------
T ss_pred CCCCceEeCCCCCCccccc
Confidence 3456899999999999863
No 231
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=39.74 E-value=89 Score=22.84 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=38.2
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCC---HHHHHHHH
Q 005703 69 TLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSK---PEEATAAL 120 (682)
Q Consensus 69 tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s---~e~A~~Al 120 (682)
+|.|.|+.-..-...|...+.....|..+.+....+.+.|.|.. .+....+|
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i 60 (71)
T 2xmw_A 6 NLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAV 60 (71)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEC---CHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCHHHHHHHH
Confidence 67888886544457788999999889888887667889999874 34444555
No 232
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=36.87 E-value=81 Score=23.96 Aligned_cols=58 Identities=9% Similarity=0.111 Sum_probs=43.5
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeC----CHHHHHHHHHcCCc
Q 005703 68 KTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYS----KPEEATAALALNNM 125 (682)
Q Consensus 68 ~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~----s~e~A~~Al~Lng~ 125 (682)
.+|.|.|+.-.--...|...+.....|..+.+.-..+-+.|.|. +.++...||.--|+
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy 65 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIEDAGF 65 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHTC
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHCCC
Confidence 36788888755556789999999988988888766778899985 56677777743444
No 233
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=36.58 E-value=72 Score=22.99 Aligned_cols=52 Identities=17% Similarity=0.211 Sum_probs=37.9
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeC---CHHHHHHHH
Q 005703 69 TLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYS---KPEEATAAL 120 (682)
Q Consensus 69 tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~---s~e~A~~Al 120 (682)
+|.|.|+.-..-...|...+.....|..+.+....+.+.|.|. +.+....+|
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i 58 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEAL 58 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTCCHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEECCCCCHHHHHHHH
Confidence 4667777544445778899998888888888766788899986 345555566
No 234
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=36.40 E-value=1.3e+02 Score=22.29 Aligned_cols=58 Identities=16% Similarity=0.204 Sum_probs=42.9
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeC---CHHHHHHHHHcCCc
Q 005703 68 KTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYS---KPEEATAALALNNM 125 (682)
Q Consensus 68 ~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~---s~e~A~~Al~Lng~ 125 (682)
.+|.|.|+.-..-...|...+.....|..+.+.-..+-+.|.|. +.++...+|.-.|+
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy 64 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGY 64 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTCCHHHHHHHHHHTTC
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHcCC
Confidence 36788888765566789999999988998888766788889884 44556666644443
No 235
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=35.39 E-value=1.3e+02 Score=21.94 Aligned_cols=57 Identities=16% Similarity=0.148 Sum_probs=41.8
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCC---HHHHHHHHHcCCc
Q 005703 69 TLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSK---PEEATAALALNNM 125 (682)
Q Consensus 69 tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s---~e~A~~Al~Lng~ 125 (682)
+|.|.|+.-..-...|...+.....|..+.+....+.+.|.|.. .+....+|.-.|+
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy 62 (69)
T 2kt2_A 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGTSPDALTAAVAGLGY 62 (69)
T ss_dssp CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETTTTEEEEEECTTSCHHHHHHHHHTTTS
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCHHHHHHHHHHCCC
Confidence 57788887555567889999998889888887667888898864 3555566644454
No 236
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=35.16 E-value=1.6e+02 Score=22.90 Aligned_cols=59 Identities=12% Similarity=0.075 Sum_probs=43.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeC----CHHHHHHHHHcCCc
Q 005703 67 KKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYS----KPEEATAALALNNM 125 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~----s~e~A~~Al~Lng~ 125 (682)
..+|.|.|+.-..-...|...+.....|..+.+....+.+.|.|. +.+....+|.-.|+
T Consensus 10 ~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy 72 (84)
T 1q8l_A 10 VLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGF 72 (84)
T ss_dssp EEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHHHTTC
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCC
Confidence 456888888765556779999999988998888766788999985 34556666643344
No 237
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=34.12 E-value=1.3e+02 Score=21.45 Aligned_cols=57 Identities=14% Similarity=0.096 Sum_probs=40.1
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCC----HHHHHHHHHcCCc
Q 005703 69 TLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSK----PEEATAALALNNM 125 (682)
Q Consensus 69 tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s----~e~A~~Al~Lng~ 125 (682)
+|.|.|+.-..-...|...+..+..|..+.+....+.+.|.|.. .+....+|.-.|+
T Consensus 5 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~ 65 (69)
T 2qif_A 5 TLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGY 65 (69)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTC
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCC
Confidence 57788886444446688889988888888887667888999863 4455556643454
No 238
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=33.91 E-value=43 Score=35.77 Aligned_cols=60 Identities=18% Similarity=0.167 Sum_probs=43.7
Q ss_pred EEEEeCCCCCC----CHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHHHcCCceecCce
Q 005703 69 TLQVSNLSPLL----TVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAALALNNMDVGGRP 131 (682)
Q Consensus 69 tL~V~NLp~~v----teedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr~ 131 (682)
--+||||..-. ....+.++..+||.|..+.|. +.-+|...+.+.+..++.-++..|.++.
T Consensus 16 lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g---~~~~vvv~~p~~~k~il~~~~~~f~~rp 79 (494)
T 3swz_A 16 LPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG---TKTTVIVGHHQLAKEVLIKKGKDFSGRP 79 (494)
T ss_dssp CCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET---TEEEEEECSHHHHHHHHTTTTTTTBBCC
T ss_pred CCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC---CCCEEEECCHHHHHHHHHhCcHhhCCCC
Confidence 34789987432 246678888899999988874 4567778899999988855666666554
No 239
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=33.54 E-value=1.5e+02 Score=22.09 Aligned_cols=57 Identities=18% Similarity=0.142 Sum_probs=41.0
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCC----HHHHHHHHHcCCc
Q 005703 69 TLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSK----PEEATAALALNNM 125 (682)
Q Consensus 69 tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s----~e~A~~Al~Lng~ 125 (682)
+|.|.|+.-..-...|...+.....|..+.+....+.+.|.|.. .+....+|.-.|+
T Consensus 5 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy 65 (75)
T 3cjk_B 5 TISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGF 65 (75)
T ss_dssp EEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTC
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCC
Confidence 57788876444456788999998889888887667889999863 4556666643354
No 240
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=32.22 E-value=7.7 Score=35.99 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=19.4
Q ss_pred HHHHHHHhcCCCeEEEEEecCCCeEEEEeC
Q 005703 82 EQLRQLFSFCGTVVECTITDSKHFAYIEYS 111 (682)
Q Consensus 82 edL~~~F~~~G~V~~v~i~~~kg~aFVeF~ 111 (682)
+||.++|...|.|.-+.. .+|||||+..
T Consensus 2 ~~~~~l~~~~G~Vkwfn~--~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV--RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET--TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC--CCCeeEEeeC
Confidence 567788888888876554 4999999976
No 241
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=32.10 E-value=1.6e+02 Score=21.92 Aligned_cols=53 Identities=9% Similarity=0.076 Sum_probs=40.3
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCC--HHHHHHHH
Q 005703 68 KTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSK--PEEATAAL 120 (682)
Q Consensus 68 ~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s--~e~A~~Al 120 (682)
.+|.|.|+.-..-...|...+.....|..+.+....+.+.|.|.. .+....+|
T Consensus 5 ~~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~i~~~i 59 (73)
T 1mwy_A 5 YSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESAL 59 (73)
T ss_dssp EEEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETTTTEEEEEESSCCHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCHHHHHHHH
Confidence 368888987655667899999998889888887667889999875 34445555
No 242
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=31.98 E-value=1e+02 Score=25.78 Aligned_cols=33 Identities=9% Similarity=0.186 Sum_probs=26.1
Q ss_pred CeEEEEEe-cCCCeEEEEeCCHHHHHHHH-HcCCc
Q 005703 93 TVVECTIT-DSKHFAYIEYSKPEEATAAL-ALNNM 125 (682)
Q Consensus 93 ~V~~v~i~-~~kg~aFVeF~s~e~A~~Al-~Lng~ 125 (682)
.|..|.+. ...||.||++...+++..+| .+.|.
T Consensus 39 ~i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 39 DVYSILASESLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp CEEEEEECTTSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cEEEEEEecccCCEEEEEEecchhHHHHHHCCCCc
Confidence 36666665 57899999999999888888 66663
No 243
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=30.64 E-value=1.1e+02 Score=22.56 Aligned_cols=46 Identities=15% Similarity=0.220 Sum_probs=37.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCC
Q 005703 67 KKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSK 112 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s 112 (682)
..+|.|.|+.-..-...|...+.....|..+.+....+.+.|.|..
T Consensus 5 ~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~ 50 (75)
T 1yjr_A 5 VLELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDP 50 (75)
T ss_dssp CEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETTTTEEEEEECT
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEecCCEEEEEECC
Confidence 3478899997666667899999999889888887667889999964
No 244
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=30.46 E-value=2e+02 Score=24.08 Aligned_cols=60 Identities=12% Similarity=0.081 Sum_probs=44.7
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCC----HHHHHHHHHcCCcee
Q 005703 68 KTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSK----PEEATAALALNNMDV 127 (682)
Q Consensus 68 ~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s----~e~A~~Al~Lng~~l 127 (682)
.+|.|.+|.-..-...|...+...-.|..+.+....+.+.|.|.. .+....+|.-.|+.+
T Consensus 10 ~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~~~~~~V~~~~~~~~~~~i~~~i~~~Gy~~ 73 (111)
T 2ofg_X 10 QQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALGYTL 73 (111)
T ss_dssp EEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTTCSHHHHHHHHHTTTCCE
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECCCCEEEEEECCCCCCHHHHHHHHHHcCCee
Confidence 467888887656667899999998889888887667889999973 455566664446543
No 245
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=29.81 E-value=1.7e+02 Score=21.52 Aligned_cols=58 Identities=9% Similarity=0.090 Sum_probs=41.6
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCC----HHHHHHHHHcCCc
Q 005703 68 KTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSK----PEEATAALALNNM 125 (682)
Q Consensus 68 ~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s----~e~A~~Al~Lng~ 125 (682)
.+|.|.|+.-..-...|...+.....|..+.+....+.+.|.|.. .+....+|.-.|+
T Consensus 8 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~ 69 (76)
T 1opz_A 8 IAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGY 69 (76)
T ss_dssp EEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHTC
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHCCC
Confidence 468889987665667799999988888888877566788888853 4555566632344
No 246
>2j5a_A 30S ribosomal protein S6; ribonucleoprotein, RIBO protein S6, RNA-binding, rRNA-binding, protein folding; 2.3A {Aquifex aeolicus} SCOP: d.58.14.1
Probab=28.72 E-value=83 Score=27.35 Aligned_cols=58 Identities=12% Similarity=0.223 Sum_probs=34.2
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcC--------CCeEEEEEe-----------c-CCCeEEEEeCC-HHH----HHHHHHcC
Q 005703 69 TLQVSNLSPLLTVEQLRQLFSFC--------GTVVECTIT-----------D-SKHFAYIEYSK-PEE----ATAALALN 123 (682)
Q Consensus 69 tL~V~NLp~~vteedL~~~F~~~--------G~V~~v~i~-----------~-~kg~aFVeF~s-~e~----A~~Al~Ln 123 (682)
++|| |.+.++++++..++..| |.|..+.-. . ...|.++.|.. ..+ .+..+.+|
T Consensus 12 ~~~I--l~p~l~~e~~~~~v~~~~~~i~~~Gg~i~~~e~wG~R~LAY~I~K~~~G~Y~l~~f~a~~~~~i~eler~lr~~ 89 (110)
T 2j5a_A 12 TVFA--VKPTLSEEEMKKKFEQVKEFIKQKGGEILYEEDWGMRQLAYPIQKFNNARYFLVQFKTENPQLPNELDFQLKID 89 (110)
T ss_dssp EEEE--ECTTSCHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEECSSCSSSCSEEEEEEEEEEESCTTHHHHHHHHHHHC
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEEEEEEEeCCHHHHHHHHHHhCCC
Confidence 5566 56778888776665544 456666543 1 22477888876 333 33344566
Q ss_pred Cceec
Q 005703 124 NMDVG 128 (682)
Q Consensus 124 g~~l~ 128 (682)
..+|.
T Consensus 90 e~VlR 94 (110)
T 2j5a_A 90 EDVIR 94 (110)
T ss_dssp TTEEE
T ss_pred cCeEE
Confidence 66664
No 247
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=26.64 E-value=1.6e+02 Score=22.20 Aligned_cols=59 Identities=17% Similarity=0.128 Sum_probs=42.6
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCC----HHHHHHHHHcCCc
Q 005703 67 KKTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSK----PEEATAALALNNM 125 (682)
Q Consensus 67 ~~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s----~e~A~~Al~Lng~ 125 (682)
..+|.|.|+.-..-...|...+.....|..+.+....+.+.|.|.. .+....+|.-.|+
T Consensus 9 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy 71 (79)
T 1kvi_A 9 SVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGF 71 (79)
T ss_dssp EEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHCC
T ss_pred EEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHCCC
Confidence 3468898997666678899999988888777776556888999863 3555666632243
No 248
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}
Probab=25.85 E-value=1.8e+02 Score=20.75 Aligned_cols=59 Identities=12% Similarity=0.113 Sum_probs=41.6
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCC----HHHHHHHHHcCCce
Q 005703 68 KTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSK----PEEATAALALNNMD 126 (682)
Q Consensus 68 ~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s----~e~A~~Al~Lng~~ 126 (682)
.+|.|.|+.-..-...|...+.....|..+.+....+.+.|.|.. .+....+|.-.|+.
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~ 67 (71)
T 2ldi_A 5 QQMQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALGYT 67 (71)
T ss_dssp EEEEEETCTTSGGGHHHHTGGGGCSSEEEEEEETTTTEEEEEECTTTCCTHHHHHHHHTTTCE
T ss_pred EEEEECCccCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCC
Confidence 367888887555556788999988888888887667888898864 34455556444543
No 249
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=24.80 E-value=1.1e+02 Score=22.51 Aligned_cols=58 Identities=14% Similarity=0.180 Sum_probs=40.0
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCC----HHHHHHHHHcCCc
Q 005703 68 KTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSK----PEEATAALALNNM 125 (682)
Q Consensus 68 ~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s----~e~A~~Al~Lng~ 125 (682)
.+|.|.|+.-..-...|...+.....|..+.+....+.+.|.|.. .+....+|.-.|+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~ 66 (72)
T 1aw0_A 5 TVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMGF 66 (72)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTC
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCcCCHHHHHHHHHHCCC
Confidence 367788876444446788889888888888777667889999863 4555666632343
No 250
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=24.39 E-value=1.4e+02 Score=21.84 Aligned_cols=52 Identities=12% Similarity=0.201 Sum_probs=37.9
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeC---CHHHHHHHH
Q 005703 69 TLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYS---KPEEATAAL 120 (682)
Q Consensus 69 tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~---s~e~A~~Al 120 (682)
+|.|.|+.-..-...|...+.....|..+.+....+.+.|.|. +.+....+|
T Consensus 5 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i 59 (72)
T 1fvq_A 5 ILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEII 59 (72)
T ss_dssp EEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTTTTEEEEEECTTSCHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHH
Confidence 5778887644445678889998888888888766788889886 345555666
No 251
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=23.82 E-value=1.3e+02 Score=22.72 Aligned_cols=57 Identities=11% Similarity=0.079 Sum_probs=41.3
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeC----CHHHHHHHHHcCCc
Q 005703 69 TLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYS----KPEEATAALALNNM 125 (682)
Q Consensus 69 tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~----s~e~A~~Al~Lng~ 125 (682)
+|.|.|+.-..-...|...+.....|..+.+....+.+.|.|. +.+....+|.-.|+
T Consensus 6 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy 66 (77)
T 1y3j_A 6 YIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIRELGF 66 (77)
T ss_dssp EEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTTTTBEEEEECTTTSCHHHHHHHHHHHTS
T ss_pred EEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCC
Confidence 6778888765566789999999888888887766788999986 34555666632343
No 252
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=23.40 E-value=39 Score=35.75 Aligned_cols=57 Identities=19% Similarity=0.137 Sum_probs=38.6
Q ss_pred EEeCCCCC---CCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHHHcCCceecCc
Q 005703 71 QVSNLSPL---LTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAALALNNMDVGGR 130 (682)
Q Consensus 71 ~V~NLp~~---vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr 130 (682)
|||||..- -....|.++..+||.|..|.|. +.-+|...+.+.+..++.-++..|.++
T Consensus 20 ~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g---~~~~vvv~~p~~i~~vl~~~~~~f~~r 79 (479)
T 3tbg_A 20 GLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLA---WTPVVVLNGLAAVREALVTHGEDTADR 79 (479)
T ss_dssp TTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEET---TEEEEEEEHHHHHHHHHTTTGGGSCBC
T ss_pred cccchHhhcCCCHHHHHHHHHHHhCCEEEEEEC---CeeEEEECCHHHHHHHHHhCChhhcCC
Confidence 57876532 2345678888999999888874 344566678888877775555555544
No 253
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}
Probab=23.38 E-value=2.8e+02 Score=22.03 Aligned_cols=53 Identities=13% Similarity=0.119 Sum_probs=40.3
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCC----HHHHHHHH
Q 005703 68 KTLQVSNLSPLLTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSK----PEEATAAL 120 (682)
Q Consensus 68 ~tL~V~NLp~~vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s----~e~A~~Al 120 (682)
.+|.|.|+.-..-...|...+.....|..+.+....+.+.|.|.. .+....+|
T Consensus 18 ~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i 74 (95)
T 2kkh_A 18 SYFDVLGICCTSEVPIIENILKSLDGVKEYSVIVPSRTVIVVHDSLLISPFQIAKAL 74 (95)
T ss_dssp EEEEETTCCTTTTHHHHHHHHHHSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHH
Confidence 468888887666667799999988888888887667889999863 45555566
No 254
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=22.62 E-value=75 Score=33.49 Aligned_cols=23 Identities=26% Similarity=0.169 Sum_probs=19.8
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhc
Q 005703 68 KTLQVSNLSPLLTVEQLRQLFSF 90 (682)
Q Consensus 68 ~tL~V~NLp~~vteedL~~~F~~ 90 (682)
..++|+|||++++..-|..+|..
T Consensus 143 ~~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 143 KFLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHH
T ss_pred ceEEEEECCCchHHHHHHHHHHh
Confidence 35899999999999988888874
No 255
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=20.65 E-value=1.1e+02 Score=32.61 Aligned_cols=58 Identities=12% Similarity=0.123 Sum_probs=35.3
Q ss_pred EEEeCCCCC--CCHHHHHHHHhcCCCeEEEEEecCCCeEEEEeCCHHHHHHHHHcCCceecCc
Q 005703 70 LQVSNLSPL--LTVEQLRQLFSFCGTVVECTITDSKHFAYIEYSKPEEATAALALNNMDVGGR 130 (682)
Q Consensus 70 L~V~NLp~~--vteedL~~~F~~~G~V~~v~i~~~kg~aFVeF~s~e~A~~Al~Lng~~l~Gr 130 (682)
-+||||..- -....|.+++.+||.|..+.+. +.-+|...+.+.+..++.-++..|.++
T Consensus 18 P~iG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g---~~~~vvv~dp~~i~~il~~~~~~f~~r 77 (507)
T 3pm0_A 18 PLIGNAAAVGQAAHLSFARLARRYGDVFQIRLG---SCPIVVLNGERAIHQALVQQGSAFADR 77 (507)
T ss_dssp ----------CCHHHHHHHHHHHHCSEEEEEET---TEEEEEECSHHHHHHHHTTTTTTSCBC
T ss_pred CeeCchhhcCccHHHHHHHHHHHhCCEEEEEEC---CccEEEECCHHHHHHHHHhCcHhhCCC
Confidence 456766532 2346678888999999888763 556788889998888874455455443
Done!