BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005704
(682 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LS42|CASP_ARATH Protein CASP OS=Arabidopsis thaliana GN=CASP PE=1 SV=2
Length = 689
Score = 1109 bits (2869), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 550/689 (79%), Positives = 620/689 (89%), Gaps = 7/689 (1%)
Query: 1 MEAPLGGSDRDKPNTSSSSP-----VSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQ 55
ME GS+RDK SSS + V++NFWK+FDLEKEKSLLDE GL+IAENQENSQ
Sbjct: 1 MEVSQDGSERDKTPPPSSSSSSSSPIPVVTNFWKEFDLEKEKSLLDEQGLRIAENQENSQ 60
Query: 56 KNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEA 115
KNRRKLAESTRDFKKASPE KLS+FNSLLKGYQEEVDN+TKRAKFGENAFLNIYQKLYEA
Sbjct: 61 KNRRKLAESTRDFKKASPENKLSMFNSLLKGYQEEVDNITKRAKFGENAFLNIYQKLYEA 120
Query: 116 PDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQ 175
PDP+PALASIAEQD KLSE+ESENRKMK+ELEE+RTEATHLKNQQ+TIRRLEERNRQLEQ
Sbjct: 121 PDPFPALASIAEQDRKLSEVESENRKMKVELEEFRTEATHLKNQQATIRRLEERNRQLEQ 180
Query: 176 QMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQL 235
QMEEK+KE+VEIKQR LAEENQKT+E+L++REQALQDQLRQAKDSV+TMQKLHELAQ+QL
Sbjct: 181 QMEEKIKEVVEIKQRNLAEENQKTMELLKDREQALQDQLRQAKDSVSTMQKLHELAQNQL 240
Query: 236 FEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDT 295
FE+RAQSDEE KQSEV+LLMDEVERAQTRLL+L+REK LRSQLQ+AN++ ++ SD
Sbjct: 241 FELRAQSDEETAGKQSEVSLLMDEVERAQTRLLTLEREKGHLRSQLQTANEDTDNKKSDN 300
Query: 296 LDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDM 355
+DSNS LENSL+AKEKIISELN E+HN+ETAL+NERE H+ EIKKLN+LL +K+ +E+M
Sbjct: 301 IDSNSMLENSLTAKEKIISELNMEIHNVETALANERESHVAEIKKLNSLLNKKDTIIEEM 360
Query: 356 KKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKME 415
KKELQ RP++K+VDDLRKKVKILQAVGYNSIEAEDW+ AT EEMSKMESLLLDKNRKME
Sbjct: 361 KKELQERPSAKLVDDLRKKVKILQAVGYNSIEAEDWDAATTGEEMSKMESLLLDKNRKME 420
Query: 416 HELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFD 475
HE+TQLKV+LSEK SLLE AE K ELTAK+NEQQ+LIQKLEDDILKGY SK+RKG +FD
Sbjct: 421 HEVTQLKVQLSEKASLLEKAEAKGEELTAKVNEQQRLIQKLEDDILKGYGSKERKGALFD 480
Query: 476 DWDLSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIG 535
+W+ SEAG E SE D+KH +QDQSSMLKVIC+QRDRFRARLRETEEE+R+LKEKIG
Sbjct: 481 EWEFSEAGVAEQSEPMDQKHVPSEQDQSSMLKVICSQRDRFRARLRETEEEIRRLKEKIG 540
Query: 536 VLTAELEKTKADNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYE 595
LT ELEKTKADNV+LYGKIR+VQDYN++KV+SRGSKKY EDLESGF+SD+ESKYKK+YE
Sbjct: 541 FLTDELEKTKADNVKLYGKIRYVQDYNHDKVVSRGSKKYVEDLESGFSSDVESKYKKIYE 600
Query: 596 DDINPFAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYARTFAFFYTILLHVLVFTCL 655
DDINPFAAFSKKER+QR K+LGIRDRITLSSGRFLLGNKYARTFAFFYTI LHVLVFTCL
Sbjct: 601 DDINPFAAFSKKEREQRIKDLGIRDRITLSSGRFLLGNKYARTFAFFYTIGLHVLVFTCL 660
Query: 656 YRMSALSYLSNGPEE--FVEKTVDLPHAL 682
YRMSA SYLS+G EE E T +LPH L
Sbjct: 661 YRMSAYSYLSHGAEETLMTEATTNLPHGL 689
>sp|Q13948|CASP_HUMAN Protein CASP OS=Homo sapiens GN=CUX1 PE=1 SV=2
Length = 678
Score = 322 bits (825), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 217/659 (32%), Positives = 367/659 (55%), Gaps = 43/659 (6%)
Query: 21 VSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKLSLF 80
V + +WK FDL++ + LD +A Q+ S+++R++L E +R+FKK +PE+
Sbjct: 5 VGSMFQYWKRFDLQQLQRELDATATVLANRQDESEQSRKRLIEQSREFKKNTPEDLRKQV 64
Query: 81 NSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLK---LSELES 137
LLK +Q E+D L+KR+K E AFLN+Y++L + PDP PAL + LK L ++E+
Sbjct: 65 APLLKSFQGEIDALSKRSKEAEAAFLNVYKRLIDVPDPVPALDLGQQLQLKVQRLHDIET 124
Query: 138 ENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQ 197
EN+K++ LEEY E +KNQ+ TI+ L+E+ R+ EQ ++ + + I K++ L +
Sbjct: 125 ENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREYEQTLKNQAETIALEKEQKLQNDFA 184
Query: 198 KTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLM 257
+ LQE + + +L +A+ V ++Q E +++LF+++ + DEE AK E+ ++M
Sbjct: 185 EKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRTELFDLKTKYDEETTAKADEIEMIM 244
Query: 258 DEVERAQTRLLSLQREKDLLRSQLQSAND--EAGSRNSDTLD--------SNSYLENSLS 307
++ERA R QRE + LR QL SAN + S+ D + S LE L+
Sbjct: 245 TDLERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVEQAIEVLTRSSLEVELA 304
Query: 308 AKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKM 367
AKE+ I++L ++ ++ +L+ RE ++I +L L K + L+ ++++L+ +
Sbjct: 305 AKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLSAKNSTLKQLEEKLKGQAD--- 361
Query: 368 VDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSE 427
++++K++ IL+++ + E A + +E LLL+KNR ++ E L++ S+
Sbjct: 362 YEEVKKELNILKSMEFAPSEG-----AGTQDAAKPLEVLLLEKNRSLQSENAALRISNSD 416
Query: 428 KTSLLETAEGKIAELTAKINEQQKLIQKLEDD--ILKGYSSKDRKGNVFDDWD-----LS 480
+ + +I E A EQ++LI +LE D I++ D +G + +
Sbjct: 417 LSGRCAELQVRITEAVATATEQRELIARLEQDLSIIQSIQRPDAEGAAEHRLEKIPEPIK 476
Query: 481 EAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAE 540
EA A P+ S+L +I +QR+RFRAR +E E E R + + L +E
Sbjct: 477 EATALFYGPAAPASGALPEGQVDSLLSIISSQRERFRARNQELEAENRLAQHTLQALQSE 536
Query: 541 LEKTKADNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYEDDINP 600
L+ +ADN++L+ KI+F+Q Y RGS + D E +Y YE+ ++P
Sbjct: 537 LDSLRADNIKLFEKIKFLQSYPG-----RGSG----------SDDTELRYSSQYEERLDP 581
Query: 601 FAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYARTFAFFYTILLHVLVFTCLYRMS 659
F++FSK+ER ++Y L D+ TLS GR +L NK ART FFYT+ LH LVF LY+++
Sbjct: 582 FSSFSKRERQRKYLSLSPWDKATLSMGRLVLSNKMARTIGFFYTLFLHCLVFLVLYKLA 640
>sp|Q5R8V1|CASP_PONAB Protein CASP OS=Pongo abelii GN=CUTL1 PE=2 SV=1
Length = 678
Score = 321 bits (822), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 215/659 (32%), Positives = 367/659 (55%), Gaps = 43/659 (6%)
Query: 21 VSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKLSLF 80
V + +WK FDL++ + LD +A Q+ S+++R++L E +R+FKK +PE+
Sbjct: 5 VGSMFQYWKRFDLQQLQRELDATATVLANRQDESEQSRKRLIEQSREFKKNTPEDLRKQV 64
Query: 81 NSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLK---LSELES 137
LLK +Q E+D L+KR+K E AFLN+Y++L + PDP PAL + LK L ++E+
Sbjct: 65 APLLKSFQGEIDALSKRSKEAEAAFLNVYKRLIDVPDPVPALDLGQQLQLKVQRLHDIET 124
Query: 138 ENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQ 197
EN+K++ LEEY E +KNQ+ TI+ L+E+ R+ EQ ++ + + I K++ L +
Sbjct: 125 ENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREYEQTLKNQAETIALEKEQKLQNDFA 184
Query: 198 KTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLM 257
+ LQE + + +L +A+ V ++Q E +++LF+++ + DEE AK E+ ++M
Sbjct: 185 EKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRTELFDLKTKYDEETTAKADEIEMIM 244
Query: 258 DEVERAQTRLLSLQREKDLLRSQLQSAND--EAGSRNSDTLD--------SNSYLENSLS 307
++ERA R QRE + LR QL SAN + S+ D + S LE L+
Sbjct: 245 TDLERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVEQAIEVLTRSSLEVELA 304
Query: 308 AKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKM 367
AKE+ I++L ++ ++ +L+ RE ++I +L L K + L+ ++++L+ +
Sbjct: 305 AKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLSAKNSTLKQLEEKLKGQAD--- 361
Query: 368 VDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSE 427
++++K++ IL+++ + E A + +E LLL+KNR ++ E L++ S+
Sbjct: 362 YEEVKKELNILKSMEFAPSEG-----AGTQDAAKPLEVLLLEKNRSLQSENAALRISNSD 416
Query: 428 KTSLLETAEGKIAELTAKINEQQKLIQKLEDD--ILKGYSSKDRKGNVFDDWD-----LS 480
+ + ++ E A EQ++LI +LE D I++ D +G + +
Sbjct: 417 LSGRCAELQVRVTEAVATATEQRELIARLEQDLSIIQSIQRPDAEGAAEHRLEKIPEPIK 476
Query: 481 EAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAE 540
EA A P+ S+L +I +QR+RFRAR +E E E R + + L +E
Sbjct: 477 EATALFYGPTAPASGALPEGQVDSLLSIISSQRERFRARNQELEAENRLAQHTLQALQSE 536
Query: 541 LEKTKADNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYEDDINP 600
L+ +ADN++L+ KI+F+Q Y RGS + D E +Y YE+ ++P
Sbjct: 537 LDSLRADNIKLFEKIKFLQSYPG-----RGSG----------SDDTELRYSSQYEERLDP 581
Query: 601 FAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYARTFAFFYTILLHVLVFTCLYRMS 659
F++FSK+ER ++Y + D+ TLS GR +L NK ART FFYT+ LH LVF LY+++
Sbjct: 582 FSSFSKRERQRKYLSMSPWDKATLSMGRLVLSNKMARTIGFFYTLFLHCLVFLVLYKLA 640
>sp|P70403|CASP_MOUSE Protein CASP OS=Mus musculus GN=Cux1 PE=2 SV=2
Length = 678
Score = 317 bits (812), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 212/659 (32%), Positives = 364/659 (55%), Gaps = 43/659 (6%)
Query: 21 VSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKLSLF 80
V +S +WK FDL++ + LD +A Q+ S+++R++L E +R+FKK +PE+
Sbjct: 5 VGSMSQYWKRFDLQQLQRELDAAATVLANRQDESEQSRKRLIEQSREFKKNTPEDLRKQV 64
Query: 81 NSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLK---LSELES 137
LLK +Q E+D L+KR+K E AFL +Y++L + PDP PAL + ++K L ++E+
Sbjct: 65 APLLKSFQGEIDALSKRSKEAEAAFLTVYKRLIDVPDPVPALDVGQQLEIKVQRLHDIET 124
Query: 138 ENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQ 197
EN+K++ LEEY E +KNQ+ TI+ L+E+ R+ EQ ++ + + I K++ L +
Sbjct: 125 ENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREYEQTLKSQAETIALEKEQKLQNDFA 184
Query: 198 KTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLM 257
+ LQE + + +L +A+ + T+Q E +++LF+++ + DEE AK E+ ++M
Sbjct: 185 EKERKLQETQMSTTSKLEEAEHKLQTLQTALEKTRTELFDLKTKYDEETTAKADEIEMIM 244
Query: 258 DEVERAQTRLLSLQREKDLLRSQLQSAND--EAGSRNSDTLD--------SNSYLENSLS 307
++ERA R QRE + LR QL SAN + S+ D + S LE L+
Sbjct: 245 TDLERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVEQAIEVLTRSSLEVELA 304
Query: 308 AKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKM 367
AKE+ I++L ++ ++ +L+ RE ++I +L L K + L+ ++++L+ +
Sbjct: 305 AKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQLNAKNSTLKQLEEKLKGQAD--- 361
Query: 368 VDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSE 427
++++K++ L+++ + E A + +E LLL+KNR ++ E L++ S+
Sbjct: 362 YEEVKKELNTLKSMEFAPSEG-----AGTQDSTKPLEVLLLEKNRSLQSENATLRISNSD 416
Query: 428 KTSLLETAEGKIAELTAKINEQQKLIQKLEDDI--LKGYSSKDRKGNVFDDWD-----LS 480
+ + + E TAK EQ++LI +LE D+ ++ D +G + +
Sbjct: 417 LSGRCAELQIHLTEATAKAVEQKELIARLEQDLSTIQSIQRPDAEGASEQGLEKIPEPIK 476
Query: 481 EAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAE 540
EA T P+ S+L +I +QR+RFR R +E E E R + I L +E
Sbjct: 477 EATALFYGPSMSSSGTLPEGQVDSLLSIISSQRERFRTRNQELEAESRMAQHTIQALQSE 536
Query: 541 LEKTKADNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYEDDINP 600
L+ +ADN++L+ KI+F+Q Y + S D E +Y YE+ ++P
Sbjct: 537 LDSLRADNIKLFEKIKFLQSYPGRGIGS---------------DDTELRYSSQYEERLDP 581
Query: 601 FAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYARTFAFFYTILLHVLVFTCLYRMS 659
F++FSK+ER ++Y L D+ TL GR +L NK ART FFYT+ LH LVF LY+++
Sbjct: 582 FSSFSKRERQRKYLGLSPWDKATLGMGRLILSNKTARTIGFFYTLFLHCLVFLVLYKLA 640
>sp|P39880|CUX1_HUMAN Homeobox protein cut-like 1 OS=Homo sapiens GN=CUX1 PE=1 SV=3
Length = 1505
Score = 174 bits (441), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 129/397 (32%), Positives = 228/397 (57%), Gaps = 21/397 (5%)
Query: 40 LDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAK 99
LD +A Q+ S+++R++L E +R+FKK +PE+ LLK +Q E+D L+KR+K
Sbjct: 13 LDATATVLANRQDESEQSRKRLIEQSREFKKNTPEDLRKQVAPLLKSFQGEIDALSKRSK 72
Query: 100 FGENAFLNIYQKLYEAPDPYPALASIAEQDLK---LSELESENRKMKIELEEYRTEATHL 156
E AFLN+Y++L + PDP PAL + LK L ++E+EN+K++ LEEY E +
Sbjct: 73 EAEAAFLNVYKRLIDVPDPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEV 132
Query: 157 KNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQ 216
KNQ+ TI+ L+E+ R+ EQ ++ + + I K++ L + + LQE + + +L +
Sbjct: 133 KNQEVTIKALKEKIREYEQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEE 192
Query: 217 AKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDL 276
A+ V ++Q E +++LF+++ + DEE AK E+ ++M ++ERA R QRE +
Sbjct: 193 AEHKVQSLQTALEKTRTELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAET 252
Query: 277 LRSQLQSAND--EAGSRNSDTLD--------SNSYLENSLSAKEKIISELNSELHNIETA 326
LR QL SAN + S+ D + S LE L+AKE+ I++L ++ ++ +
Sbjct: 253 LREQLSSANHSLQLASQIQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQAS 312
Query: 327 LSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSI 386
L+ RE ++I +L L K + L+ ++++L+ + ++++K++ IL+ S+
Sbjct: 313 LTKLRENSASQISQLEQQLSAKNSTLKQLEEKLKGQ---ADYEEVKKELNILK-----SM 364
Query: 387 EAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKV 423
E E A + +E LLL+KNR ++ E L++
Sbjct: 365 EFAPSEGAGTQDAAKPLEVLLLEKNRSLQSENAALRI 401
>sp|P34237|CASP_YEAST Protein CASP OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=COY1 PE=1 SV=2
Length = 679
Score = 171 bits (434), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 185/679 (27%), Positives = 340/679 (50%), Gaps = 80/679 (11%)
Query: 26 NFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLK 85
+ W DL + LD ++I + + S +R+ LA T+ FKK PEEKL+ N ++K
Sbjct: 11 DIWAKADLTNLQRELDADVIEIKDKETLSLNSRKSLATETKKFKKLEPEEKLNNVNKIIK 70
Query: 86 GYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIE 145
YQ E+DNLT+R+KF E ++Y+KL EAPDP P L S E+ K+ +S+ K KI
Sbjct: 71 QYQREIDNLTQRSKFSEKVLFDVYEKLSEAPDPQPLLQSSLEKLGKID--DSKELKEKIS 128
Query: 146 -LEEYRTEATHLKNQQSTIRRLEERN-RQLEQQMEEKVKEI---VEIKQRGLAEENQ--- 197
LE+ + + +S + LE+ + + L +++ K +EI E K R E
Sbjct: 129 YLEDKLAKYADYETLKSRLLDLEQSSAKTLAKRLTAKTQEINSTWEEKGRNWKEREADLL 188
Query: 198 KTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLM 257
K L +QE+ +AL+ ++ + D + + +Q +E + +E NL+
Sbjct: 189 KQLTNVQEQNKALEAKISKNIDIEGNGNEDGDQENNQ---------KEVSTRIAEYNLVT 239
Query: 258 DEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELN 317
E+E Q R+ L++ + L L A EA E L AKE +++L
Sbjct: 240 QELETTQARIYQLEKRNEELSGALAKATSEAEK------------ETELHAKELKLNQLE 287
Query: 318 SELHNIETALSNERE---QHMNEIK-KLNALLIEKEAA---LEDMKKELQARPT-SKMVD 369
SE + + ER+ +NE+K +LN+++ E E+ LE ++++L +K+ +
Sbjct: 288 SENALLSASYEQERKSTSHAINELKEQLNSVVAESESYKSELETVRRKLNNYSDYNKIKE 347
Query: 370 DLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKT 429
+L KI G N ++ D ++ + D+ + ES LL N+K++ L + + K + +
Sbjct: 348 ELSALKKI--EFGVNEDDS-DNDIRSEDKNDNTFESSLLSANKKLQATLAEYRSKSTAQE 404
Query: 430 SLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSE 489
+ + +L +I ++ +KLE D+ ++ NV ++ + + + ++
Sbjct: 405 EERNELKKSVDQLKQQIATLKEANEKLETDL-------EKVENVSPHFNETASMMSGVTR 457
Query: 490 KADKKHTY-----------PDQ-----DQSSMLKVICNQRDRFRARLRETEEEVRQLKEK 533
+ + + ++ P+ +QS++L ++ QRDRFR+R + E+++RQ +
Sbjct: 458 QMNNRTSHKMSPTSSIIGIPEDGELSGNQSTILPIVTKQRDRFRSRNMDLEKQLRQGNSE 517
Query: 534 IGVLTAELEKTKADNVQLYGKIRFVQDYNNEKV-ISRGSKKYAEDLESGFTSDIESKYKK 592
G L E+ K K DN +LY +IR++Q YNN +++ +++ D+ES+Y +
Sbjct: 518 KGKLKLEISKLKGDNTKLYERIRYLQSYNNNNAPVNQSTERI----------DVESQYSR 567
Query: 593 MYEDDINPFAAFSKKERDQ-RYKELGIRDRITLSSGRFLLGNKYARTFAFFYTILLHVLV 651
+Y++ ++P A F + E + + K+L +++ S + +L NK R FY I LH LV
Sbjct: 568 VYDESLHPMANFRQNELNHYKNKKLSALEKLFSSFAKVILQNKMTRMVFLFYCIGLHGLV 627
Query: 652 F-TCLYRMSALSYLSNGPE 669
F +Y ++ Y++ PE
Sbjct: 628 FMMSMYVINISGYMT--PE 644
>sp|P53564|CUX1_MOUSE Homeobox protein cut-like 1 OS=Mus musculus GN=Cux1 PE=1 SV=3
Length = 1515
Score = 171 bits (432), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 126/395 (31%), Positives = 227/395 (57%), Gaps = 19/395 (4%)
Query: 40 LDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAK 99
LD +A Q+ S+++R++L E +R+FKK +PE+ LLK +Q E+D L+KR+K
Sbjct: 13 LDATATVLANRQDESEQSRKRLIEQSREFKKNTPEDLRKQVAPLLKSFQGEIDALSKRSK 72
Query: 100 FGENAFLNIYQKLYEAPDPYPALASIAEQDLK---LSELESENRKMKIELEEYRTEATHL 156
E AFL +Y++L + PDP PAL + ++K L ++E+EN+K++ LEEY E +
Sbjct: 73 EAEAAFLTVYKRLIDVPDPVPALDVGQQLEIKVQRLHDIETENQKLRETLEEYNKEFAEV 132
Query: 157 KNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQ 216
KNQ+ TI+ L+E+ R+ EQ ++ + + I K++ L + + LQE + + +L +
Sbjct: 133 KNQEVTIKALKEKIREYEQTLKSQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEE 192
Query: 217 AKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDL 276
A+ + T+Q E +++LF+++ + DEE AK E+ ++M ++ERA R QRE +
Sbjct: 193 AEHKLQTLQTALEKTRTELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAET 252
Query: 277 LRSQLQSAND--EAGSRNSDTLD------SNSYLENSLSAKEKIISELNSELHNIETALS 328
LR QL SAN + S+ D + S LE L+AKE+ I++L ++ ++ +L+
Sbjct: 253 LREQLSSANHSLQLASQIQKAPDVAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLT 312
Query: 329 NEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEA 388
RE ++I +L L K + L+ ++++L+ + ++++K++ L+ S+E
Sbjct: 313 KLRENSASQISQLEQQLNAKNSTLKQLEEKLKGQ---ADYEEVKKELNTLK-----SMEF 364
Query: 389 EDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKV 423
E A + +E LLL+KNR ++ E L++
Sbjct: 365 APSEGAGTQDSTKPLEVLLLEKNRSLQSENATLRI 399
>sp|O59795|CASP_SCHPO Protein CASP OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=coy1 PE=3 SV=1
Length = 633
Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 173/644 (26%), Positives = 303/644 (47%), Gaps = 78/644 (12%)
Query: 51 QENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQ 110
Q+ S R++L+ T++F+K E KL LLK YQ +D+LTKRAK E F +Y+
Sbjct: 39 QKTSLDERKELSSKTKEFRKQPDEVKLGEMKGLLKLYQSGIDSLTKRAKSAEATFFRVYE 98
Query: 111 KLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERN 170
L E PDPYP L A N K + ++E+ + E ++ +LE
Sbjct: 99 TLGEVPDPYPLLIEAA-----------NNLKTQKQIEDLKKEKEEMEGSLQGKEKLEREV 147
Query: 171 RQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKL--- 227
L +++ +K K++VE + A ++ E +Q L + Q ++ +T+QKL
Sbjct: 148 ENLRKEL-DKYKDLVETEAEKRAAITKEECEKSWLEQQKLYKDMEQ--ENASTIQKLTSK 204
Query: 228 -HELAQSQL-FEVRAQSDEERV----AKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQL 281
EL SQL +++A +E AK +EVN ++ E++ A ++ LQ E +L+
Sbjct: 205 IRELQASQLDHDLQASQNESAGLDVNAKSAEVNAILSELDDANKIIVELQAEIAVLK--- 261
Query: 282 QSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKL 341
Q+ ++ + D L + + L + + +L++EL +I+ A E E H I+ L
Sbjct: 262 QNTKEQKSGSSQDDLSNQQ--KQQLDFMDSLNKKLSTELESIKEASRKEMETHCATIQTL 319
Query: 342 NALLIEKEAALEDMKKELQARPTSKM--VDDLRKKVKILQAVGYNSIEAEDWEVATNDEE 399
E E KE +K D++++++ +L+ + ++ E AT+ E
Sbjct: 320 -----ENEVKEARKVKEESLTLANKFSDYDEIKRELSVLKQIEFSG------EHATH--E 366
Query: 400 MSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDD 459
+ +ES LL + +++ EL +L+ ++ T + K + L K +EQ+++I+KLE D
Sbjct: 367 NTSLESQLLKREKQLSEELAKLRSTNAQLTDRITQESKKASFLEQKASEQEEVIRKLEKD 426
Query: 460 ILKGYSSKDRKGNVFDDWDLSEAGGT--ELSEKADKKHTYP-------------DQDQSS 504
+ + D +G+V+ GT +LS + P ++ S+
Sbjct: 427 L----ADVDVEGSVYLSNTTYRREGTSGQLSPTSSIMGGNPSLFNGSVLSRNSVNETGSA 482
Query: 505 MLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNNE 564
++ VI QRDRFR +V +KI +L ++LE+ + N LY ++RF Y
Sbjct: 483 IVDVIKQQRDRFRRANVTLVNQVSAANDKIALLESKLEEVEKSNTLLYEQMRFRDHY--- 539
Query: 565 KVISRGSKKYAEDLESGFTSDIESKYKKMYEDDINPFAAFSKKERDQRYKELGIRDRITL 624
+K+ E S + YE+ I+PFA+F KKE ++ Y +G +RI
Sbjct: 540 -------QKHVEPSSSHLQT------AAAYENSISPFASFRKKEAERAYSRMGSFERIVY 586
Query: 625 SSGRFLLGNKYARTFAFFYTILLHVLVFTCLYRMSALSYLSNGP 668
+ R LL ++ R F Y ILLH+ + L ++ + P
Sbjct: 587 ALLRTLLFSRATRGLFFMYLILLHLFIMIVLLKLGIAGNTAYTP 630
>sp|O14529|CUX2_HUMAN Homeobox protein cut-like 2 OS=Homo sapiens GN=CUX2 PE=1 SV=4
Length = 1486
Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 107/383 (27%), Positives = 188/383 (49%), Gaps = 34/383 (8%)
Query: 21 VSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKLSLF 80
V + +WK FDL + + L+ + +++ QE S+ + + L E R+FKK PEE +
Sbjct: 5 VGSMFQYWKRFDLRRLQKELNSVASELSARQEESEHSHKHLIELRREFKKNVPEEIREMV 64
Query: 81 NSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENR 140
+LK +Q EV L+KR++ E AFL++Y++L EAPDP P + D +L +
Sbjct: 65 APVLKSFQAEVVALSKRSQEAEAAFLSVYKQLIEAPDPVPVFEAARSLDDRL-----QPP 119
Query: 141 KMKIELEEYRTEATHLKNQQSTIRRLEER--NRQLEQQMEEKVKEIVEIKQRGLAEEN-- 196
+ R T K + E+R + E + + I + L E
Sbjct: 120 SFDPSGQPRRDLHTSWKRNPELLSPKEQREGTSPAGPTLTEGSR-LPGIPGKALLTETLL 178
Query: 197 -------QKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAK 249
QK L QE + L +L +A++ + + + Q++L E+R + DEE +K
Sbjct: 179 QRNEAEKQKGL---QEVQITLAARLGEAEEKIKVLHSALKATQAELLELRRKYDEEAASK 235
Query: 250 QSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAN-----------DEAGSRNSDTLDS 298
EV L+M +E+A R + QRE + LR QL S N +G + + TL S
Sbjct: 236 ADEVGLIMTNLEKANQRAEAAQREVESLREQLASVNSSIRLACCSPQGPSGDKVNFTLCS 295
Query: 299 NSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKE 358
LE +L++K++ I L ++ +++++L E N+I L L K A+E ++++
Sbjct: 296 GPRLEAALASKDREILRLLKDVQHLQSSLQELEEASANQIADLERQLTAKSEAIEKLEEK 355
Query: 359 LQARPTSKMVDDLRKKVKILQAV 381
LQA+ ++++ ++ IL+A+
Sbjct: 356 LQAQ---SDYEEIKTELSILKAM 375
>sp|Q8IA98|CASP_CAEEL Protein CASP OS=Caenorhabditis elegans GN=ceh-44 PE=2 SV=1
Length = 621
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 137/646 (21%), Positives = 317/646 (49%), Gaps = 63/646 (9%)
Query: 23 VISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNS 82
++S W+ D ++ ++ ++ + + Q++S+ + +L E + ++ + ++ +
Sbjct: 3 IVSRAWESVDWDRIQTRVEAEVTALGQRQDDSEIRKTRLVEESNAYRGRTNKDSRKVAIP 62
Query: 83 LLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPAL--ASIAEQDLKLSELESENR 140
L+K +Q E D L R+ ENA ++I + + PDP L A + D + ++ E R
Sbjct: 63 LIKAFQSEFDGLLARSTAAENALIDICKSIVSLPDPKSLLKGAEAWKNDAEKTQKAVEER 122
Query: 141 -KMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIV-EIKQRGLAEENQK 198
++K +L + E L+ + +R+L+++ +LE + + ++ V E++++ E N +
Sbjct: 123 EELKRQLIKVNNELEDLRGKDVKVRKLKDKLAKLESEQDIFIENAVNEVEKKAEQELNDR 182
Query: 199 TLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSE-VNLLM 257
E++ E+E+ +++Q + ++ +++ ++ Q +L E+ Q+ E++ ++E +++ M
Sbjct: 183 LTELIAEKEK-MKEQNEILEKNMDSLESKNKDIQRKL-EIAKQTVEQKDGLENEQLSIAM 240
Query: 258 DEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELN 317
++ A+ +++ L+ L ++ + N+ S+ + ++ + L + L K+ +I +L
Sbjct: 241 KDLADAKHKIVFLEERVSQLENEAEKVNE---SKKAGNIEDIAALGSVLVQKDDVIQQLT 297
Query: 318 SELHNIETALSNEREQ---HMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKK 374
+++ E + E + ++ ++K N LI L ++K +L++R + + + +
Sbjct: 298 NDIKRHEASHVEELAKWKLAVSAVEKKNKTLI---GELNELKNQLESRNDYEAI---KNE 351
Query: 375 VKILQAVGY-NSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLE 433
+++L+ + + +S EA + E + ++ LL +KNR++++E L+V E
Sbjct: 352 LRLLREIEFGDSAEANAESIERLGETVETLDRLLAEKNRRLQNENASLRVANDGFKGRNE 411
Query: 434 TAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADK 493
E ++ L K +LI +LE D+ + D + E GT + K
Sbjct: 412 EQEAELTVLKEKSERNDRLIAQLEADL----------ASAVQDIGIPERMGT---NEMLK 458
Query: 494 KHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYG 553
P +S++ ++ +QR+R R+ EE + K K + E+E+ + +N++L
Sbjct: 459 DAPAPTISDASLVPILTSQRNRLHERVTSLEEAISLEKTKQLSVQNEIERVREENIRLCE 518
Query: 554 KIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYEDDINPFAAFSKKERDQRY 613
+IRF+Q S G ++ A ++E+G +D + R
Sbjct: 519 RIRFLQ--------SPGGQQQA-NVEAGLGNDFRN---------------------GNRN 548
Query: 614 KELGIRDRITLSSGRFLLGNKYARTFAFFYTILLHVLVFTCLYRMS 659
K++ + D+ TL+ GR +L +RT F Y ++LH L+ LY+ +
Sbjct: 549 KKVSLHDKTTLNMGRAILATPKSRTVFFSYLLILHALIMLVLYKFA 594
>sp|P70298|CUX2_MOUSE Homeobox protein cut-like 2 OS=Mus musculus GN=Cux2 PE=2 SV=2
Length = 1426
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 88/329 (26%), Positives = 154/329 (46%), Gaps = 43/329 (13%)
Query: 79 LFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESE 138
+ +LK +Q EV L+KR++ E AFL++Y++L EAPDP P+ D +L
Sbjct: 1 MVAPVLKSFQAEVVALSKRSREAEAAFLSVYKQLIEAPDPVPSFEVARTLDDRL------ 54
Query: 139 NRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRG----LAE 194
++ + R + H+ +R E EQ E G E
Sbjct: 55 -QRPSFDPSGQRLQDVHI-----AWKRCPEPPSAREQN--EGTCPTGHTPANGNHLPGPE 106
Query: 195 ENQKTLEILQ----EREQALQD-------QLRQAKDSVATMQKLHELAQSQLFEVRAQSD 243
+ T +LQ ER++ LQ+ +L +A++ + + + Q++L E+R + D
Sbjct: 107 DTLVTDTLLQKNEAERQKGLQEVHITLAARLGEAEEKIKVLHSALKATQTELLELRRKYD 166
Query: 244 EERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAN-----------DEAGSRN 292
EE +K EV L+M +E+A R + QRE + LR QL S N +G +
Sbjct: 167 EEAASKADEVGLIMTNLEKANQRAEAAQREVESLREQLASVNSSIRLACCSPQGPSGEKV 226
Query: 293 SDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAAL 352
S L S LE +L++K++ I L + + +L E N+I L L K A+
Sbjct: 227 SFALCSGPRLEAALASKDREILRLLKDAQQLRHSLQELEEVSANQIADLERQLAAKSEAI 286
Query: 353 EDMKKELQARPTSKMVDDLRKKVKILQAV 381
E ++++L+A+ ++++ ++ IL+A+
Sbjct: 287 EKLQEKLEAQ---ADYEEIKTELSILRAM 312
>sp|Q9BL02|CUT_CAEEL Homeobox protein cut-like ceh-44 OS=Caenorhabditis elegans
GN=ceh-44 PE=2 SV=1
Length = 1273
Score = 62.8 bits (151), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 82/410 (20%), Positives = 217/410 (52%), Gaps = 20/410 (4%)
Query: 23 VISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNS 82
++S W+ D ++ ++ ++ + + Q++S+ + +L E + ++ + ++ +
Sbjct: 3 IVSRAWESVDWDRIQTRVEAEVTALGQRQDDSEIRKTRLVEESNAYRGRTNKDSRKVAIP 62
Query: 83 LLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPAL--ASIAEQDLKLSELESENR 140
L+K +Q E D L R+ ENA ++I + + PDP L A + D + ++ E R
Sbjct: 63 LIKAFQSEFDGLLARSTAAENALIDICKSIVSLPDPKSLLKGAEAWKNDAEKTQKAVEER 122
Query: 141 -KMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIV-EIKQRGLAEENQK 198
++K +L + E L+ + +R+L+++ +LE + + ++ V E++++ E N +
Sbjct: 123 EELKRQLIKVNNELEDLRGKDVKVRKLKDKLAKLESEQDIFIENAVNEVEKKAEQELNDR 182
Query: 199 TLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSE-VNLLM 257
E++ E+E+ +++Q + ++ +++ ++ Q +L E+ Q+ E++ ++E +++ M
Sbjct: 183 LTELIAEKEK-MKEQNEILEKNMDSLESKNKDIQRKL-EIAKQTVEQKDGLENEQLSIAM 240
Query: 258 DEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELN 317
++ A+ +++ L+ L ++ + N+ S+ + ++ + L + L K+ +I +L
Sbjct: 241 KDLADAKHKIVFLEERVSQLENEAEKVNE---SKKAGNIEDIAALGSVLVQKDDVIQQLT 297
Query: 318 SELHNIETALSNEREQH---MNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKK 374
+++ E + E + ++ ++K N LI L ++K +L++R + ++ +
Sbjct: 298 NDIKRHEASHVEELAKWKLAVSAVEKKNKTLI---GELNELKNQLESR---NDYEAIKNE 351
Query: 375 VKILQAVGY-NSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKV 423
+++L+ + + +S EA + E + ++ LL +KNR++++E L+V
Sbjct: 352 LRLLREIEFGDSAEANAESIERLGETVETLDRLLAEKNRRLQNENASLRV 401
>sp|Q8IYA2|C144C_HUMAN Coiled-coil domain-containing protein 144C OS=Homo sapiens
GN=CCDC144C PE=2 SV=3
Length = 1237
Score = 38.5 bits (88), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 112/262 (42%), Gaps = 45/262 (17%)
Query: 131 KLSELESENRKM--------------KIELEEYRTE---ATHLKNQQSTIRRLE---ERN 170
+L+ L +EN+ + +IE+E YR A H +Q T R L+ +R
Sbjct: 697 QLNNLTAENKMLNSELENGKENQERLEIEMESYRCRLAAAVHDCDQSQTARDLKLDFQRT 756
Query: 171 RQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQERE---QALQDQLRQAKDSVATMQKL 227
RQ ++ +K+K + GL +N+ E L E +LQ QL +D++ +
Sbjct: 757 RQEWVRLHDKMK----VDMSGLQAKNEILSEKLSNAESKINSLQIQLHNTRDALGRESLI 812
Query: 228 HELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDE 287
E Q L + + Q E QS++ + + E + RL LQ E LLR QL + +
Sbjct: 813 LERVQRDLSQTQCQKKETEQMYQSKLKKYIAKQESVEERLSQLQSENMLLRQQLDDVHKK 872
Query: 288 AGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIE 347
A S +EK IS + + H+ L E E+ + +++ N L++
Sbjct: 873 ANS------------------QEKTISTIQDQFHSAAKNLQAESEKQILSLQEKNKELMD 914
Query: 348 KEAALEDMKKELQARPTSKMVD 369
+ L++ + + + +D
Sbjct: 915 EYNHLKERMDQCEKEKAGRKID 936
>sp|P62134|RAD50_METMP DNA double-strand break repair Rad50 ATPase OS=Methanococcus
maripaludis (strain S2 / LL) GN=rad50 PE=3 SV=1
Length = 993
Score = 33.9 bits (76), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 89/177 (50%), Gaps = 32/177 (18%)
Query: 302 LENSLSAKEKIISELNS-----ELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMK 356
L+N K K+ISEL E N+E L + E +I KLN ++++KE+ + + K
Sbjct: 425 LQNETDEKTKLISELTDFEKIEEKINLENELKEKYEDLSEKIDKLNEIVLKKESKISEYK 484
Query: 357 K---ELQARPTSKMVDDLR----KKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLD 409
EL+ S V + KK ++L+ YNS E ++ +++T E + K ++L+
Sbjct: 485 NSKAELEKTKDSCHVCQSKITEEKKQELLEK--YNS-EIQNEQLST--ESLKKQLEIILN 539
Query: 410 KNRKME---HELTQLKVKLSE-----------KTSLLETAEGKIAELTAKINEQQKL 452
K KM+ +E+ K+K E + S++ET E K+ ELT KINE L
Sbjct: 540 KKEKMKVKLNEIDSFKLKYGELKEKKNYSLKVEESIIETTE-KLNELTGKINEYSSL 595
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.127 0.331
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 232,143,195
Number of Sequences: 539616
Number of extensions: 9747785
Number of successful extensions: 74947
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 4380
Number of HSP's that attempted gapping in prelim test: 52629
Number of HSP's gapped (non-prelim): 14477
length of query: 682
length of database: 191,569,459
effective HSP length: 124
effective length of query: 558
effective length of database: 124,657,075
effective search space: 69558647850
effective search space used: 69558647850
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 65 (29.6 bits)