Query 005704
Match_columns 682
No_of_seqs 222 out of 397
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 12:29:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005704.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005704hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0963 Transcription factor/C 100.0 3E-113 8E-118 931.6 61.4 619 17-665 1-624 (629)
2 PF08172 CASP_C: CASP C termin 100.0 4E-60 8.7E-65 483.3 24.9 233 432-665 1-247 (248)
3 KOG0161 Myosin class II heavy 99.4 3.1E-08 6.8E-13 124.2 53.5 185 187-380 1030-1231(1930)
4 KOG0971 Microtubule-associated 99.2 1.4E-07 3E-12 108.0 39.4 297 95-444 176-489 (1243)
5 PRK02224 chromosome segregatio 99.1 4.4E-05 9.6E-10 93.1 56.3 103 410-545 538-640 (880)
6 PRK02224 chromosome segregatio 99.1 0.0001 2.2E-09 90.0 57.7 172 206-379 364-550 (880)
7 TIGR02169 SMC_prok_A chromosom 99.0 1E-05 2.2E-10 101.2 48.4 24 581-604 528-551 (1164)
8 TIGR00606 rad50 rad50. This fa 99.0 6.8E-05 1.5E-09 95.0 54.0 42 20-63 561-602 (1311)
9 PF09787 Golgin_A5: Golgin sub 99.0 4E-06 8.7E-11 95.9 37.2 119 522-650 389-511 (511)
10 PF00038 Filament: Intermediat 99.0 1.1E-05 2.4E-10 86.5 38.3 288 143-465 3-304 (312)
11 PRK03918 chromosome segregatio 98.9 0.00047 1E-08 84.2 55.8 29 250-278 458-486 (880)
12 KOG0161 Myosin class II heavy 98.8 0.0011 2.4E-08 84.5 53.6 50 509-558 1454-1503(1930)
13 KOG0963 Transcription factor/C 98.8 0.00011 2.3E-09 82.8 39.2 298 144-465 121-432 (629)
14 KOG4677 Golgi integral membran 98.8 1.7E-05 3.8E-10 85.4 30.9 211 413-656 327-547 (554)
15 PF07888 CALCOCO1: Calcium bin 98.8 0.00023 4.9E-09 80.4 41.1 181 248-466 280-460 (546)
16 KOG4674 Uncharacterized conser 98.6 0.0037 8.1E-08 78.7 50.6 391 98-555 47-491 (1822)
17 PF10174 Cast: RIM-binding pro 98.6 0.0016 3.5E-08 77.2 45.7 46 132-177 289-338 (775)
18 TIGR02169 SMC_prok_A chromosom 98.6 0.0014 3E-08 82.1 48.5 16 12-27 30-45 (1164)
19 PF10174 Cast: RIM-binding pro 98.6 0.0018 3.9E-08 76.8 44.4 184 193-386 48-266 (775)
20 TIGR02168 SMC_prok_B chromosom 98.6 0.0024 5.2E-08 79.9 47.3 19 612-630 1086-1104(1179)
21 TIGR00606 rad50 rad50. This fa 98.5 0.01 2.3E-07 75.6 59.9 74 86-159 266-341 (1311)
22 PF01576 Myosin_tail_1: Myosin 98.5 1.8E-08 3.8E-13 121.2 0.0 215 218-463 3-234 (859)
23 TIGR02168 SMC_prok_B chromosom 98.5 0.01 2.2E-07 74.3 50.3 16 584-599 529-544 (1179)
24 COG1196 Smc Chromosome segrega 98.5 0.0045 9.8E-08 77.9 46.7 50 508-562 967-1016(1163)
25 COG1196 Smc Chromosome segrega 98.5 0.0033 7.1E-08 79.1 45.3 94 502-603 444-544 (1163)
26 PF12128 DUF3584: Protein of u 98.4 0.016 3.5E-07 73.2 52.2 36 253-288 499-534 (1201)
27 PF00038 Filament: Intermediat 98.4 0.00098 2.1E-08 71.5 33.4 108 402-551 188-295 (312)
28 PF05701 WEMBL: Weak chloropla 98.3 0.013 2.8E-07 67.5 45.0 292 213-546 117-414 (522)
29 KOG4674 Uncharacterized conser 98.3 0.031 6.7E-07 70.9 52.8 160 299-464 1101-1284(1822)
30 KOG0977 Nuclear envelope prote 98.3 0.0028 6.1E-08 71.8 34.8 271 209-546 110-384 (546)
31 KOG0971 Microtubule-associated 98.3 0.0039 8.4E-08 72.7 34.9 344 135-564 229-575 (1243)
32 PF12128 DUF3584: Protein of u 98.3 0.039 8.6E-07 69.7 48.9 43 504-546 607-649 (1201)
33 PRK03918 chromosome segregatio 98.2 0.037 8E-07 67.7 62.2 22 77-98 164-185 (880)
34 PRK01156 chromosome segregatio 98.2 0.04 8.7E-07 67.7 54.3 36 251-286 409-444 (895)
35 KOG0996 Structural maintenance 98.2 0.037 8.1E-07 66.8 46.3 166 257-464 404-569 (1293)
36 PF00261 Tropomyosin: Tropomyo 98.1 0.0044 9.6E-08 64.1 28.7 151 201-379 81-232 (237)
37 KOG0964 Structural maintenance 98.1 0.04 8.7E-07 65.3 38.5 201 237-463 244-444 (1200)
38 KOG0933 Structural maintenance 98.1 0.031 6.8E-07 66.4 36.7 264 130-457 677-940 (1174)
39 PRK04863 mukB cell division pr 98.0 0.15 3.3E-06 65.2 47.1 16 586-601 694-709 (1486)
40 KOG0612 Rho-associated, coiled 97.9 0.074 1.6E-06 64.6 37.5 117 402-536 667-788 (1317)
41 PF05701 WEMBL: Weak chloropla 97.9 0.1 2.2E-06 60.3 48.5 59 506-564 388-446 (522)
42 KOG4643 Uncharacterized coiled 97.8 0.16 3.4E-06 60.7 48.7 112 33-160 179-294 (1195)
43 KOG1937 Uncharacterized conser 97.8 0.07 1.5E-06 58.5 31.5 191 88-288 190-382 (521)
44 PF07888 CALCOCO1: Calcium bin 97.8 0.13 2.9E-06 58.5 45.9 58 407-464 348-405 (546)
45 PF15070 GOLGA2L5: Putative go 97.7 0.12 2.7E-06 60.4 34.5 33 433-465 282-314 (617)
46 KOG4643 Uncharacterized coiled 97.7 0.22 4.9E-06 59.4 49.1 257 24-286 50-343 (1195)
47 PHA02562 46 endonuclease subun 97.7 0.029 6.2E-07 65.0 29.3 177 253-455 215-404 (562)
48 KOG0250 DNA repair protein RAD 97.7 0.039 8.5E-07 66.4 30.2 143 177-334 268-424 (1074)
49 PF05557 MAD: Mitotic checkpoi 97.7 2.4E-05 5.2E-10 93.3 3.8 201 252-465 210-413 (722)
50 KOG0976 Rho/Rac1-interacting s 97.7 0.2 4.4E-06 58.3 39.8 84 203-286 111-197 (1265)
51 PF00261 Tropomyosin: Tropomyo 97.7 0.046 1E-06 56.5 27.1 57 407-463 174-230 (237)
52 KOG0977 Nuclear envelope prote 97.7 0.13 2.9E-06 58.5 32.4 45 135-182 90-134 (546)
53 PRK04778 septation ring format 97.6 0.23 5E-06 57.9 46.8 30 217-246 138-167 (569)
54 PF01576 Myosin_tail_1: Myosin 97.6 1.1E-05 2.4E-10 97.4 0.0 296 196-547 178-504 (859)
55 PRK11281 hypothetical protein; 97.6 0.15 3.3E-06 63.3 33.7 53 401-453 277-329 (1113)
56 KOG0250 DNA repair protein RAD 97.5 0.24 5.2E-06 60.0 33.6 15 587-601 507-521 (1074)
57 PF14915 CCDC144C: CCDC144C pr 97.5 0.17 3.7E-06 53.1 35.3 47 242-288 61-107 (305)
58 KOG0933 Structural maintenance 97.4 0.5 1.1E-05 56.7 47.2 99 29-127 313-416 (1174)
59 PF09726 Macoilin: Transmembra 97.4 0.072 1.6E-06 63.1 27.9 105 260-381 540-658 (697)
60 PHA02562 46 endonuclease subun 97.4 0.25 5.5E-06 57.2 32.0 108 208-329 216-324 (562)
61 KOG0996 Structural maintenance 97.3 0.82 1.8E-05 55.8 53.2 56 37-92 326-383 (1293)
62 PF09726 Macoilin: Transmembra 97.3 0.3 6.4E-06 58.1 30.1 59 407-465 599-657 (697)
63 PF09730 BicD: Microtubule-ass 97.3 0.64 1.4E-05 55.0 32.4 57 409-465 265-321 (717)
64 KOG0612 Rho-associated, coiled 97.2 0.96 2.1E-05 55.5 39.5 39 61-101 443-484 (1317)
65 PRK01156 chromosome segregatio 97.2 1.1 2.3E-05 55.3 55.8 39 506-544 683-721 (895)
66 PRK11637 AmiB activator; Provi 97.1 0.54 1.2E-05 52.9 29.7 34 252-285 97-130 (428)
67 PF05557 MAD: Mitotic checkpoi 97.1 0.0035 7.5E-08 75.1 12.7 105 429-551 502-625 (722)
68 PF08317 Spc7: Spc7 kinetochor 97.1 0.62 1.3E-05 50.5 28.3 35 82-116 68-102 (325)
69 KOG0976 Rho/Rac1-interacting s 97.1 1 2.2E-05 52.7 38.5 225 202-448 89-316 (1265)
70 KOG1029 Endocytic adaptor prot 97.0 1.1 2.3E-05 52.5 31.3 67 300-372 531-598 (1118)
71 KOG0994 Extracellular matrix g 97.0 1.4 3E-05 53.7 36.6 117 414-562 1554-1670(1758)
72 KOG4673 Transcription factor T 97.0 1 2.2E-05 52.0 44.6 121 162-283 613-743 (961)
73 PF13514 AAA_27: AAA domain 97.0 1.8 4E-05 54.6 51.1 51 78-132 560-610 (1111)
74 PRK11637 AmiB activator; Provi 97.0 0.81 1.8E-05 51.5 29.5 14 643-656 362-375 (428)
75 KOG4593 Mitotic checkpoint pro 96.9 1.3 2.8E-05 51.5 42.3 11 114-124 36-46 (716)
76 PF05622 HOOK: HOOK protein; 96.9 0.00024 5.2E-09 84.8 0.0 64 312-380 460-523 (713)
77 PRK10929 putative mechanosensi 96.9 2.2 4.7E-05 53.3 36.7 22 631-652 627-648 (1109)
78 COG1579 Zn-ribbon protein, pos 96.9 0.7 1.5E-05 47.7 25.0 131 208-373 55-185 (239)
79 PF15619 Lebercilin: Ciliary p 96.9 0.34 7.4E-06 48.6 22.2 91 195-288 65-155 (194)
80 KOG0994 Extracellular matrix g 96.9 1.9 4.2E-05 52.5 42.8 61 30-90 1252-1312(1758)
81 KOG1003 Actin filament-coating 96.8 0.62 1.3E-05 46.1 24.5 123 136-288 3-125 (205)
82 PF05622 HOOK: HOOK protein; 96.8 0.00033 7.2E-09 83.5 0.0 44 503-546 480-523 (713)
83 KOG0978 E3 ubiquitin ligase in 96.8 1.8 3.9E-05 50.9 40.2 38 76-113 312-349 (698)
84 PF04849 HAP1_N: HAP1 N-termin 96.7 0.75 1.6E-05 49.0 24.2 87 201-288 93-190 (306)
85 PF14915 CCDC144C: CCDC144C pr 96.7 1.1 2.4E-05 47.2 34.0 27 405-431 274-300 (305)
86 PF06160 EzrA: Septation ring 96.6 2.2 4.7E-05 49.8 46.4 56 204-259 121-176 (560)
87 KOG4673 Transcription factor T 96.6 2.3 4.9E-05 49.3 55.9 54 501-557 852-905 (961)
88 TIGR03185 DNA_S_dndD DNA sulfu 96.5 2.7 5.8E-05 50.0 41.8 36 413-448 432-467 (650)
89 KOG0962 DNA repair protein RAD 96.5 3.6 7.8E-05 51.4 42.9 81 81-167 690-770 (1294)
90 PRK04863 mukB cell division pr 96.5 4.4 9.6E-05 52.3 49.0 25 508-532 642-666 (1486)
91 KOG0980 Actin-binding protein 96.4 2 4.4E-05 51.1 27.5 135 221-359 412-549 (980)
92 PF05911 DUF869: Plant protein 96.3 3.6 7.9E-05 49.4 36.2 94 257-379 133-227 (769)
93 PF08317 Spc7: Spc7 kinetochor 96.3 1.6 3.4E-05 47.4 24.8 46 336-381 244-291 (325)
94 PF05667 DUF812: Protein of un 96.3 3.3 7.1E-05 48.5 29.0 84 428-555 445-528 (594)
95 TIGR01005 eps_transp_fam exopo 96.3 0.62 1.3E-05 56.3 23.4 36 250-285 236-271 (754)
96 PF15619 Lebercilin: Ciliary p 96.2 1.5 3.3E-05 44.0 24.3 179 249-450 10-191 (194)
97 PF09755 DUF2046: Uncharacteri 96.2 2.2 4.7E-05 45.5 32.4 109 264-377 184-293 (310)
98 PF15070 GOLGA2L5: Putative go 96.2 4 8.7E-05 48.1 47.7 90 425-546 409-498 (617)
99 KOG0995 Centromere-associated 96.2 3.4 7.4E-05 47.2 40.4 35 249-283 292-326 (581)
100 COG0419 SbcC ATPase involved i 96.1 5.6 0.00012 49.2 57.2 54 506-559 690-746 (908)
101 PF13851 GAS: Growth-arrest sp 96.1 1.3 2.8E-05 44.7 21.0 145 81-243 26-174 (201)
102 PF15066 CAGE1: Cancer-associa 96.1 2.5 5.5E-05 46.9 24.3 28 260-287 451-478 (527)
103 KOG0999 Microtubule-associated 95.9 4.1 8.8E-05 46.2 44.7 243 204-464 99-373 (772)
104 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.8 1.3 2.8E-05 41.6 18.5 68 210-284 64-131 (132)
105 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.8 0.39 8.5E-06 45.1 14.9 84 204-287 9-95 (132)
106 PF12718 Tropomyosin_1: Tropom 95.8 1.1 2.4E-05 42.8 18.0 26 260-285 75-100 (143)
107 PF04012 PspA_IM30: PspA/IM30 95.5 2 4.2E-05 43.8 20.2 25 254-278 161-185 (221)
108 PRK10698 phage shock protein P 95.5 3.3 7.2E-05 42.5 21.7 120 110-242 17-136 (222)
109 KOG0946 ER-Golgi vesicle-tethe 95.5 7.4 0.00016 46.2 31.3 60 404-463 892-951 (970)
110 COG1579 Zn-ribbon protein, pos 95.5 3.4 7.5E-05 42.7 21.5 119 138-263 39-161 (239)
111 KOG2129 Uncharacterized conser 95.5 2.4 5.1E-05 46.5 20.7 21 268-288 256-276 (552)
112 KOG0018 Structural maintenance 95.4 9.5 0.00021 46.7 34.5 28 12-39 32-59 (1141)
113 PF05010 TACC: Transforming ac 95.4 3.6 7.9E-05 41.7 27.8 131 139-281 11-141 (207)
114 COG5185 HEC1 Protein involved 95.3 6.1 0.00013 44.1 35.7 152 101-263 229-387 (622)
115 PF12718 Tropomyosin_1: Tropom 95.3 1.7 3.7E-05 41.5 17.4 24 309-332 78-101 (143)
116 TIGR03017 EpsF chain length de 95.2 4.6 0.0001 45.4 23.5 23 49-71 70-92 (444)
117 PF14662 CCDC155: Coiled-coil 95.1 3.9 8.3E-05 40.7 25.6 37 404-444 150-186 (193)
118 PF09728 Taxilin: Myosin-like 95.1 5.8 0.00013 42.8 36.8 61 403-464 246-306 (309)
119 PRK09039 hypothetical protein; 95.0 5 0.00011 43.9 22.5 21 135-155 44-64 (343)
120 PRK09039 hypothetical protein; 95.0 1.7 3.7E-05 47.5 18.9 65 251-326 123-187 (343)
121 TIGR03007 pepcterm_ChnLen poly 95.0 1.9 4E-05 49.4 20.2 38 248-285 201-238 (498)
122 PLN03188 kinesin-12 family pro 95.0 14 0.00031 46.2 30.7 153 188-346 1090-1253(1320)
123 PF13851 GAS: Growth-arrest sp 94.8 2.1 4.6E-05 43.2 17.5 42 202-243 90-131 (201)
124 PRK10929 putative mechanosensi 94.8 16 0.00034 46.0 45.0 47 407-453 263-309 (1109)
125 COG4372 Uncharacterized protei 94.8 7.7 0.00017 42.3 27.9 13 595-607 422-434 (499)
126 PF09787 Golgin_A5: Golgin sub 94.8 10 0.00023 43.7 36.1 40 425-464 387-426 (511)
127 TIGR02977 phageshock_pspA phag 94.7 5.8 0.00013 40.5 23.2 121 110-243 17-137 (219)
128 PF14662 CCDC155: Coiled-coil 94.6 5.3 0.00011 39.7 24.3 131 306-461 10-140 (193)
129 TIGR02680 conserved hypothetic 94.5 21 0.00045 46.3 32.7 27 501-527 1083-1109(1353)
130 KOG1029 Endocytic adaptor prot 94.5 13 0.00029 43.9 32.6 21 264-284 436-456 (1118)
131 KOG0980 Actin-binding protein 94.5 15 0.00032 44.3 31.7 84 201-284 420-506 (980)
132 KOG0999 Microtubule-associated 94.5 11 0.00024 42.8 39.3 48 507-554 314-361 (772)
133 PF10473 CENP-F_leu_zip: Leuci 94.4 4.7 0.0001 38.3 20.3 17 306-322 89-105 (140)
134 TIGR03185 DNA_S_dndD DNA sulfu 94.2 16 0.00034 43.6 37.1 62 402-463 377-440 (650)
135 PF10212 TTKRSYEDQ: Predicted 94.2 1.8 3.9E-05 49.1 16.6 87 249-353 418-504 (518)
136 TIGR03007 pepcterm_ChnLen poly 94.2 8 0.00017 44.3 22.7 97 264-361 274-380 (498)
137 KOG0964 Structural maintenance 94.0 20 0.00042 43.7 33.2 26 13-38 33-58 (1200)
138 PF08614 ATG16: Autophagy prot 93.8 0.8 1.7E-05 45.9 12.1 36 250-285 150-185 (194)
139 PF15254 CCDC14: Coiled-coil d 93.8 7.6 0.00016 46.0 20.9 102 203-329 453-554 (861)
140 PF15035 Rootletin: Ciliary ro 93.5 3.5 7.5E-05 41.0 15.6 89 197-288 8-97 (182)
141 COG4942 Membrane-bound metallo 93.3 17 0.00036 40.7 28.9 90 415-543 170-263 (420)
142 PF09728 Taxilin: Myosin-like 93.2 15 0.00032 39.7 34.5 137 313-466 130-266 (309)
143 PF09755 DUF2046: Uncharacteri 93.1 14 0.00031 39.5 35.5 26 407-432 227-252 (310)
144 smart00787 Spc7 Spc7 kinetocho 93.0 4.8 0.0001 43.4 17.0 46 336-381 239-286 (312)
145 COG1842 PspA Phage shock prote 92.9 13 0.00028 38.3 19.4 153 110-275 17-183 (225)
146 COG2433 Uncharacterized conser 92.6 4.4 9.5E-05 46.7 16.5 84 195-278 419-508 (652)
147 KOG0995 Centromere-associated 92.4 25 0.00054 40.5 45.3 76 196-271 285-366 (581)
148 PF10481 CENP-F_N: Cenp-F N-te 92.3 15 0.00032 38.5 18.2 131 366-546 60-190 (307)
149 KOG0249 LAR-interacting protei 92.1 17 0.00037 42.7 20.4 39 339-379 219-257 (916)
150 PF15450 DUF4631: Domain of un 92.0 26 0.00057 39.9 30.4 197 159-361 299-504 (531)
151 TIGR02680 conserved hypothetic 92.0 49 0.0011 42.9 45.0 38 251-288 290-327 (1353)
152 PF07111 HCR: Alpha helical co 92.0 31 0.00068 40.7 42.1 272 135-440 329-620 (739)
153 TIGR01843 type_I_hlyD type I s 91.8 24 0.00053 39.0 24.6 15 589-603 400-414 (423)
154 PF05667 DUF812: Protein of un 91.7 33 0.00072 40.4 30.8 138 214-380 389-526 (594)
155 PF09789 DUF2353: Uncharacteri 91.6 23 0.00049 38.3 31.6 83 204-287 78-162 (319)
156 PRK11281 hypothetical protein; 91.2 51 0.0011 41.7 48.7 22 412-433 356-377 (1113)
157 PF00769 ERM: Ezrin/radixin/mo 91.2 16 0.00035 38.1 17.9 25 405-429 178-202 (246)
158 PF05911 DUF869: Plant protein 91.2 42 0.00091 40.7 27.4 61 90-160 493-553 (769)
159 PRK04778 septation ring format 91.2 36 0.00079 39.9 47.9 101 16-121 61-196 (569)
160 COG0419 SbcC ATPase involved i 91.0 49 0.0011 41.1 57.9 27 599-626 800-826 (908)
161 smart00787 Spc7 Spc7 kinetocho 91.0 26 0.00057 37.9 28.0 220 82-348 63-283 (312)
162 PF09730 BicD: Microtubule-ass 90.8 43 0.00094 40.2 43.3 54 407-463 357-410 (717)
163 PF13514 AAA_27: AAA domain 90.8 57 0.0012 41.5 54.7 40 507-546 892-931 (1111)
164 PF15397 DUF4618: Domain of un 90.8 24 0.00051 37.0 27.9 41 408-448 185-225 (258)
165 KOG0979 Structural maintenance 90.4 52 0.0011 40.4 31.7 88 202-289 266-356 (1072)
166 KOG0982 Centrosomal protein Nu 90.4 33 0.00072 38.1 23.1 55 411-465 334-388 (502)
167 KOG1853 LIS1-interacting prote 90.3 25 0.00053 36.4 22.2 70 193-262 33-102 (333)
168 PF12329 TMF_DNA_bd: TATA elem 90.2 3 6.5E-05 35.2 9.3 69 301-375 2-70 (74)
169 PF00769 ERM: Ezrin/radixin/mo 90.1 22 0.00048 37.1 17.7 50 414-463 80-129 (246)
170 TIGR01000 bacteriocin_acc bact 89.8 40 0.00087 38.2 23.7 103 255-360 94-196 (457)
171 PF12777 MT: Microtubule-bindi 89.7 31 0.00066 37.8 19.3 50 412-461 224-273 (344)
172 KOG4593 Mitotic checkpoint pro 89.6 50 0.0011 39.0 46.6 51 413-463 395-445 (716)
173 PF10168 Nup88: Nuclear pore c 89.4 31 0.00068 41.5 20.5 79 200-279 634-713 (717)
174 KOG0249 LAR-interacting protei 89.3 53 0.0012 38.9 24.5 35 297-331 91-125 (916)
175 PF06160 EzrA: Septation ring 89.1 52 0.0011 38.5 50.7 128 403-555 373-501 (560)
176 PF15397 DUF4618: Domain of un 89.1 32 0.0007 36.1 28.8 54 210-263 79-132 (258)
177 PF04065 Not3: Not1 N-terminal 88.8 27 0.00059 36.1 16.9 79 87-177 6-87 (233)
178 COG1340 Uncharacterized archae 88.8 36 0.00078 36.3 32.9 33 199-231 35-67 (294)
179 COG4372 Uncharacterized protei 88.6 42 0.00092 36.9 28.1 62 213-285 75-136 (499)
180 KOG0978 E3 ubiquitin ligase in 88.6 61 0.0013 38.7 48.4 49 505-560 574-622 (698)
181 PLN03229 acetyl-coenzyme A car 88.6 62 0.0014 38.7 23.8 39 118-158 456-500 (762)
182 PF03915 AIP3: Actin interacti 88.5 10 0.00022 42.6 14.6 222 76-332 86-320 (424)
183 KOG0018 Structural maintenance 88.5 74 0.0016 39.4 36.8 63 401-464 395-457 (1141)
184 PF15066 CAGE1: Cancer-associa 88.1 50 0.0011 37.2 28.1 42 115-157 296-337 (527)
185 PF10168 Nup88: Nuclear pore c 88.1 69 0.0015 38.7 22.4 81 200-287 588-668 (717)
186 PF04156 IncA: IncA protein; 87.9 21 0.00046 35.2 15.4 55 506-560 132-186 (191)
187 KOG2991 Splicing regulator [RN 87.5 39 0.00084 35.1 20.5 92 406-536 214-310 (330)
188 KOG2150 CCR4-NOT transcription 87.4 21 0.00045 41.1 16.2 59 87-157 6-65 (575)
189 PF11559 ADIP: Afadin- and alp 87.1 21 0.00046 34.0 14.2 81 249-347 64-144 (151)
190 KOG0946 ER-Golgi vesicle-tethe 86.8 80 0.0017 38.0 32.4 30 517-546 910-939 (970)
191 PF05384 DegS: Sensor protein 86.8 32 0.0007 33.5 17.1 121 137-272 27-154 (159)
192 PF08614 ATG16: Autophagy prot 86.8 4.8 0.0001 40.3 10.0 109 407-554 72-180 (194)
193 KOG4360 Uncharacterized coiled 86.4 28 0.00061 39.5 16.2 128 135-281 217-345 (596)
194 COG1340 Uncharacterized archae 86.1 51 0.0011 35.2 31.0 34 251-284 69-102 (294)
195 COG2433 Uncharacterized conser 85.8 12 0.00025 43.4 13.2 97 414-546 413-509 (652)
196 PRK10884 SH3 domain-containing 85.4 8.5 0.00018 39.1 10.9 26 260-285 127-152 (206)
197 PRK10884 SH3 domain-containing 84.7 13 0.00028 37.8 11.8 14 164-177 89-102 (206)
198 PF10146 zf-C4H2: Zinc finger- 84.4 28 0.00061 35.9 14.3 97 263-380 6-102 (230)
199 TIGR03017 EpsF chain length de 84.1 78 0.0017 35.5 26.0 57 216-280 315-371 (444)
200 PF06548 Kinesin-related: Kine 83.5 83 0.0018 35.4 26.5 153 188-346 320-483 (488)
201 TIGR02338 gimC_beta prefoldin, 83.1 33 0.00071 31.1 12.7 43 501-543 64-106 (110)
202 COG3883 Uncharacterized protei 82.9 67 0.0014 33.9 21.2 77 204-287 37-113 (265)
203 PF06705 SF-assemblin: SF-asse 82.8 63 0.0014 33.5 29.1 71 313-384 152-222 (247)
204 PF06632 XRCC4: DNA double-str 82.6 23 0.0005 38.8 13.4 94 111-222 117-211 (342)
205 KOG1937 Uncharacterized conser 82.5 91 0.002 35.1 24.9 95 407-546 323-417 (521)
206 PF15290 Syntaphilin: Golgi-lo 82.1 30 0.00064 36.4 13.2 31 403-433 136-166 (305)
207 PF12795 MscS_porin: Mechanose 81.6 68 0.0015 33.1 19.8 173 349-541 37-215 (240)
208 PRK10246 exonuclease subunit S 81.4 1.6E+02 0.0035 37.2 40.4 25 259-283 778-802 (1047)
209 PF10498 IFT57: Intra-flagella 81.2 30 0.00065 38.2 13.8 63 402-465 253-315 (359)
210 KOG1850 Myosin-like coiled-coi 80.9 86 0.0019 33.7 25.2 192 137-343 130-324 (391)
211 TIGR01005 eps_transp_fam exopo 80.7 1.4E+02 0.0031 36.1 26.8 32 250-281 375-406 (754)
212 KOG1899 LAR transmembrane tyro 79.9 1.3E+02 0.0028 35.3 19.2 10 110-119 73-82 (861)
213 PF01486 K-box: K-box region; 79.9 22 0.00047 31.6 10.2 49 134-183 16-64 (100)
214 PRK15178 Vi polysaccharide exp 79.8 1.1E+02 0.0024 34.6 17.8 95 250-360 241-338 (434)
215 PF04111 APG6: Autophagy prote 79.7 35 0.00077 36.9 13.7 37 246-282 45-81 (314)
216 PF12325 TMF_TATA_bd: TATA ele 79.5 53 0.0011 30.5 13.7 12 368-379 98-109 (120)
217 PF11559 ADIP: Afadin- and alp 79.5 58 0.0013 31.0 15.8 42 204-245 93-134 (151)
218 PF10267 Tmemb_cc2: Predicted 78.9 60 0.0013 36.3 15.2 28 523-557 263-294 (395)
219 PF06785 UPF0242: Uncharacteri 78.5 1E+02 0.0023 33.3 17.5 39 615-657 349-393 (401)
220 PF05483 SCP-1: Synaptonemal c 78.4 1.5E+02 0.0033 35.1 50.7 24 589-612 715-738 (786)
221 PF04111 APG6: Autophagy prote 78.1 44 0.00094 36.2 13.8 40 510-549 98-137 (314)
222 KOG0804 Cytoplasmic Zn-finger 78.1 86 0.0019 35.3 15.8 31 145-177 340-370 (493)
223 KOG4360 Uncharacterized coiled 77.8 1.4E+02 0.003 34.3 21.0 99 252-361 199-300 (596)
224 KOG4809 Rab6 GTPase-interactin 77.7 1.4E+02 0.0031 34.4 33.4 104 301-417 377-482 (654)
225 PF09789 DUF2353: Uncharacteri 77.7 1.1E+02 0.0024 33.2 27.9 26 501-526 273-298 (319)
226 KOG1003 Actin filament-coating 77.7 81 0.0018 31.6 22.9 58 407-464 128-185 (205)
227 cd00890 Prefoldin Prefoldin is 77.5 57 0.0012 29.8 13.1 44 501-544 84-127 (129)
228 COG3206 GumC Uncharacterized p 77.3 1.4E+02 0.0029 34.0 22.6 30 254-283 242-271 (458)
229 COG1730 GIM5 Predicted prefold 76.8 68 0.0015 30.8 13.0 46 501-546 91-136 (145)
230 COG3883 Uncharacterized protei 76.6 1.1E+02 0.0023 32.4 23.6 15 367-381 128-142 (265)
231 cd00632 Prefoldin_beta Prefold 76.4 57 0.0012 29.2 12.2 45 501-545 60-104 (105)
232 PF05010 TACC: Transforming ac 75.4 99 0.0021 31.5 27.0 47 410-456 155-201 (207)
233 PRK00409 recombination and DNA 74.3 1E+02 0.0023 37.6 17.0 18 108-125 477-494 (782)
234 PRK14011 prefoldin subunit alp 74.1 68 0.0015 30.7 12.3 45 502-546 79-123 (144)
235 KOG4807 F-actin binding protei 74.0 1.5E+02 0.0032 32.8 24.3 28 21-48 32-59 (593)
236 COG1842 PspA Phage shock prote 74.0 1.1E+02 0.0024 31.5 19.1 63 402-464 85-147 (225)
237 PF00170 bZIP_1: bZIP transcri 73.6 15 0.00033 29.8 6.8 43 511-553 19-61 (64)
238 PF12325 TMF_TATA_bd: TATA ele 73.4 78 0.0017 29.4 13.2 48 401-449 16-63 (120)
239 PF03245 Phage_lysis: Bacterio 72.7 79 0.0017 29.4 12.2 51 414-464 12-62 (125)
240 PF14197 Cep57_CLD_2: Centroso 72.6 23 0.00051 29.5 7.7 44 502-545 24-67 (69)
241 PF10212 TTKRSYEDQ: Predicted 72.5 1.9E+02 0.0041 33.4 17.9 48 407-457 467-514 (518)
242 PF04156 IncA: IncA protein; 72.5 74 0.0016 31.4 12.9 40 507-546 126-165 (191)
243 PF14992 TMCO5: TMCO5 family 72.3 1.4E+02 0.003 31.8 19.5 51 504-561 116-166 (280)
244 PF15290 Syntaphilin: Golgi-lo 72.2 1.1E+02 0.0024 32.4 14.0 74 160-238 67-143 (305)
245 PF01920 Prefoldin_2: Prefoldi 72.1 68 0.0015 28.1 12.0 42 501-542 59-100 (106)
246 TIGR01069 mutS2 MutS2 family p 72.0 1E+02 0.0022 37.6 16.2 18 108-125 472-489 (771)
247 PF07106 TBPIP: Tat binding pr 71.7 59 0.0013 31.6 11.7 68 250-333 71-138 (169)
248 PRK03947 prefoldin subunit alp 71.6 90 0.0019 29.3 15.5 119 415-546 5-136 (140)
249 PF07106 TBPIP: Tat binding pr 71.6 47 0.001 32.3 11.0 29 306-334 74-102 (169)
250 PF13870 DUF4201: Domain of un 70.7 1.1E+02 0.0024 29.9 20.0 27 256-282 143-169 (177)
251 PF10146 zf-C4H2: Zinc finger- 70.5 78 0.0017 32.8 12.7 37 504-540 67-103 (230)
252 KOG0804 Cytoplasmic Zn-finger 70.3 1.9E+02 0.0042 32.6 17.1 23 326-348 425-447 (493)
253 TIGR01010 BexC_CtrB_KpsE polys 69.8 1.7E+02 0.0038 31.9 16.8 39 247-285 274-312 (362)
254 COG4026 Uncharacterized protei 68.8 94 0.002 31.8 12.2 31 253-283 130-160 (290)
255 PRK10698 phage shock protein P 68.7 1.4E+02 0.0031 30.5 20.9 22 138-159 53-74 (222)
256 TIGR00293 prefoldin, archaeal 68.7 84 0.0018 28.8 11.6 37 510-546 85-121 (126)
257 PF10224 DUF2205: Predicted co 67.8 49 0.0011 28.5 8.8 51 507-557 12-62 (80)
258 PF08826 DMPK_coil: DMPK coile 67.7 66 0.0014 26.2 9.4 45 194-238 14-58 (61)
259 PF15294 Leu_zip: Leucine zipp 67.3 93 0.002 33.1 12.5 112 110-235 119-245 (278)
260 smart00338 BRLZ basic region l 67.2 19 0.0004 29.3 6.0 44 510-553 18-61 (65)
261 PF07111 HCR: Alpha helical co 67.1 2.8E+02 0.006 33.2 45.6 36 506-541 382-417 (739)
262 PF15450 DUF4631: Domain of un 65.9 2.5E+02 0.0055 32.3 40.7 30 84-113 22-51 (531)
263 KOG2129 Uncharacterized conser 65.8 2.3E+02 0.0049 31.7 27.1 50 410-459 254-308 (552)
264 PF09744 Jnk-SapK_ap_N: JNK_SA 65.5 1.4E+02 0.003 29.1 15.5 30 200-229 84-113 (158)
265 cd00584 Prefoldin_alpha Prefol 65.0 1.2E+02 0.0025 28.0 12.8 43 501-543 84-126 (129)
266 KOG3091 Nuclear pore complex, 64.8 2.6E+02 0.0056 32.0 16.3 64 208-282 337-400 (508)
267 KOG3385 V-SNARE [Intracellular 64.7 37 0.00081 31.1 7.8 33 626-658 84-116 (118)
268 PF09731 Mitofilin: Mitochondr 64.4 2.9E+02 0.0062 32.4 25.6 34 346-381 408-442 (582)
269 PRK09841 cryptic autophosphory 63.9 1.8E+02 0.004 35.1 16.2 43 339-381 342-385 (726)
270 KOG4438 Centromere-associated 63.7 2.5E+02 0.0055 31.5 25.1 36 250-285 158-193 (446)
271 TIGR03495 phage_LysB phage lys 63.6 74 0.0016 30.2 10.0 72 208-279 22-96 (135)
272 PLN03229 acetyl-coenzyme A car 63.5 3.4E+02 0.0073 32.9 21.7 39 250-288 461-502 (762)
273 KOG1853 LIS1-interacting prote 63.4 2E+02 0.0042 30.1 23.3 36 141-176 31-67 (333)
274 PF11365 DUF3166: Protein of u 62.3 1.2E+02 0.0025 27.1 10.3 41 427-467 5-45 (96)
275 PF08172 CASP_C: CASP C termin 62.2 1.6E+02 0.0035 30.7 13.3 40 507-546 96-135 (248)
276 KOG1962 B-cell receptor-associ 62.0 1.5E+02 0.0033 30.3 12.5 61 243-328 150-210 (216)
277 PF11932 DUF3450: Protein of u 61.7 2E+02 0.0044 29.8 18.3 37 348-385 129-166 (251)
278 KOG4005 Transcription factor X 61.4 21 0.00046 36.5 6.3 49 507-555 77-127 (292)
279 PF09731 Mitofilin: Mitochondr 61.2 3.2E+02 0.007 31.9 23.1 15 189-203 309-323 (582)
280 PF11365 DUF3166: Protein of u 61.2 93 0.002 27.7 9.5 39 251-289 8-46 (96)
281 PRK09841 cryptic autophosphory 60.6 3.8E+02 0.0082 32.5 19.6 40 203-242 258-297 (726)
282 TIGR02231 conserved hypothetic 60.5 1.1E+02 0.0025 35.3 13.2 46 501-546 128-173 (525)
283 KOG0972 Huntingtin interacting 60.4 1.7E+02 0.0037 31.2 12.7 75 192-287 253-330 (384)
284 PF13863 DUF4200: Domain of un 59.7 1.4E+02 0.003 27.2 12.8 30 249-278 79-108 (126)
285 PF02183 HALZ: Homeobox associ 59.1 42 0.00091 25.6 6.1 41 412-452 1-41 (45)
286 KOG1899 LAR transmembrane tyro 58.8 3.7E+02 0.0079 31.8 19.0 28 209-236 129-156 (861)
287 PF10481 CENP-F_N: Cenp-F N-te 58.6 2.5E+02 0.0054 29.8 16.3 24 523-546 100-123 (307)
288 PF12795 MscS_porin: Mechanose 58.4 2.3E+02 0.0049 29.2 24.8 25 310-334 191-215 (240)
289 PF04849 HAP1_N: HAP1 N-termin 58.4 2.7E+02 0.0058 30.1 26.1 72 306-379 162-240 (306)
290 PF03962 Mnd1: Mnd1 family; I 58.2 2E+02 0.0044 28.7 13.2 15 314-328 113-127 (188)
291 cd00632 Prefoldin_beta Prefold 57.8 1.4E+02 0.003 26.6 12.5 38 192-229 64-101 (105)
292 PF04728 LPP: Lipoprotein leuc 57.7 70 0.0015 25.6 7.3 47 213-270 4-50 (56)
293 PRK13729 conjugal transfer pil 57.6 43 0.00094 38.0 8.5 37 251-287 90-126 (475)
294 KOG2077 JNK/SAPK-associated pr 57.3 97 0.0021 35.8 11.0 93 368-465 272-371 (832)
295 PF10018 Med4: Vitamin-D-recep 56.1 67 0.0014 32.0 8.9 58 406-464 6-63 (188)
296 TIGR03752 conj_TIGR03752 integ 55.7 1.2E+02 0.0026 34.5 11.6 52 136-187 58-109 (472)
297 PF12761 End3: Actin cytoskele 55.5 1.8E+02 0.004 29.3 11.6 33 207-239 162-194 (195)
298 COG4026 Uncharacterized protei 55.2 1.5E+02 0.0032 30.4 10.9 52 407-458 154-205 (290)
299 PF06120 Phage_HK97_TLTM: Tail 55.1 3E+02 0.0065 29.7 16.5 150 103-260 34-189 (301)
300 KOG4687 Uncharacterized coiled 54.7 2.9E+02 0.0062 29.3 17.3 36 247-282 26-68 (389)
301 PF01442 Apolipoprotein: Apoli 54.6 2E+02 0.0044 27.5 24.1 10 352-361 179-188 (202)
302 KOG3647 Predicted coiled-coil 54.5 2.9E+02 0.0062 29.2 14.4 99 409-546 105-203 (338)
303 PF04582 Reo_sigmaC: Reovirus 54.3 25 0.00054 38.1 5.8 54 501-561 102-155 (326)
304 PRK09343 prefoldin subunit bet 54.3 1.8E+02 0.0039 26.8 13.1 43 501-543 68-110 (121)
305 PF07716 bZIP_2: Basic region 54.2 41 0.00088 26.3 5.6 37 510-546 17-53 (54)
306 PRK11519 tyrosine kinase; Prov 54.2 4.6E+02 0.0099 31.8 17.2 38 205-242 260-297 (719)
307 PF10805 DUF2730: Protein of u 54.0 46 0.001 30.0 6.7 45 335-379 34-78 (106)
308 PF15035 Rootletin: Ciliary ro 54.0 2.4E+02 0.0051 28.1 19.9 82 207-288 83-164 (182)
309 PF06387 Calcyon: D1 dopamine 53.9 9.6 0.00021 37.2 2.3 29 634-663 83-111 (186)
310 KOG0962 DNA repair protein RAD 53.7 6.1E+02 0.013 32.8 53.4 194 26-253 160-355 (1294)
311 PF08581 Tup_N: Tup N-terminal 53.6 1.2E+02 0.0025 26.1 8.6 31 138-168 40-71 (79)
312 PF10224 DUF2205: Predicted co 53.5 46 0.001 28.6 6.2 48 517-564 15-62 (80)
313 KOG4196 bZIP transcription fac 53.4 43 0.00094 31.3 6.4 46 510-562 73-118 (135)
314 TIGR00634 recN DNA repair prot 53.3 4.3E+02 0.0093 30.9 25.2 14 266-279 302-315 (563)
315 PF12004 DUF3498: Domain of un 53.0 4.5 9.7E-05 46.2 0.0 28 306-333 467-494 (495)
316 KOG4302 Microtubule-associated 53.0 4.7E+02 0.01 31.3 20.8 36 343-380 160-195 (660)
317 PF06156 DUF972: Protein of un 52.8 64 0.0014 29.3 7.4 52 509-560 6-57 (107)
318 PF07889 DUF1664: Protein of u 52.7 1.2E+02 0.0027 28.3 9.4 67 313-381 45-111 (126)
319 PF00170 bZIP_1: bZIP transcri 52.3 55 0.0012 26.4 6.3 37 512-548 27-63 (64)
320 PLN02939 transferase, transfer 52.1 5.8E+02 0.013 32.1 25.5 7 637-643 592-598 (977)
321 PRK11519 tyrosine kinase; Prov 52.0 3.2E+02 0.0069 33.1 15.4 12 368-379 372-383 (719)
322 cd00890 Prefoldin Prefoldin is 51.0 1.7E+02 0.0038 26.5 10.4 44 404-447 82-125 (129)
323 PF03980 Nnf1: Nnf1 ; InterPr 50.9 68 0.0015 28.8 7.4 40 501-540 70-109 (109)
324 PF06005 DUF904: Protein of un 50.6 89 0.0019 26.3 7.3 44 514-557 21-64 (72)
325 COG1382 GimC Prefoldin, chaper 49.8 2.2E+02 0.0047 26.5 12.4 39 189-227 68-106 (119)
326 PF10186 Atg14: UV radiation r 49.6 3.3E+02 0.0071 28.4 19.4 24 257-280 62-85 (302)
327 PF07798 DUF1640: Protein of u 49.5 2.7E+02 0.0058 27.4 17.7 32 251-282 58-90 (177)
328 COG4717 Uncharacterized conser 49.4 5.9E+02 0.013 31.4 31.8 53 501-560 380-433 (984)
329 PRK15178 Vi polysaccharide exp 49.3 4.5E+02 0.0096 29.9 17.9 66 211-287 241-308 (434)
330 PF10267 Tmemb_cc2: Predicted 48.9 4.3E+02 0.0094 29.6 15.4 17 255-271 302-318 (395)
331 KOG0742 AAA+-type ATPase [Post 48.5 4.6E+02 0.0099 29.8 21.3 11 110-120 56-66 (630)
332 KOG0244 Kinesin-like protein [ 48.4 6.2E+02 0.014 31.3 24.5 144 301-445 513-661 (913)
333 PF11544 Spc42p: Spindle pole 47.9 1.2E+02 0.0027 25.8 7.7 52 407-465 3-54 (76)
334 PF05266 DUF724: Protein of un 47.7 3E+02 0.0066 27.5 18.3 69 105-173 17-98 (190)
335 cd00584 Prefoldin_alpha Prefol 47.5 2.3E+02 0.0049 26.0 11.5 46 403-448 81-126 (129)
336 TIGR01010 BexC_CtrB_KpsE polys 47.5 4.1E+02 0.0089 29.0 19.9 31 212-242 170-200 (362)
337 PF13094 CENP-Q: CENP-Q, a CEN 47.4 2.7E+02 0.0058 26.8 14.6 61 402-463 21-81 (160)
338 KOG0288 WD40 repeat protein Ti 47.3 4.6E+02 0.0099 29.5 14.4 26 258-283 13-38 (459)
339 TIGR02231 conserved hypothetic 47.0 1.3E+02 0.0028 34.8 10.7 29 254-282 134-162 (525)
340 KOG3208 SNARE protein GS28 [In 46.2 3.5E+02 0.0076 27.8 16.6 137 506-659 84-231 (231)
341 PF03962 Mnd1: Mnd1 family; I 44.8 3.3E+02 0.0072 27.2 13.3 28 257-284 68-95 (188)
342 PF12761 End3: Actin cytoskele 44.6 3.5E+02 0.0075 27.3 11.9 49 417-465 97-153 (195)
343 PF10498 IFT57: Intra-flagella 44.2 4.8E+02 0.01 28.9 20.4 43 192-234 246-288 (359)
344 PF08581 Tup_N: Tup N-terminal 44.0 2.1E+02 0.0045 24.6 10.5 47 302-348 30-76 (79)
345 KOG4807 F-actin binding protei 44.0 5E+02 0.011 28.9 27.5 61 400-464 507-571 (593)
346 COG3074 Uncharacterized protei 43.9 96 0.0021 25.9 6.3 41 407-447 30-70 (79)
347 PF14197 Cep57_CLD_2: Centroso 43.9 1.9E+02 0.0041 24.1 9.8 33 251-283 33-65 (69)
348 PF08826 DMPK_coil: DMPK coile 43.8 1.8E+02 0.0039 23.8 7.9 44 412-455 14-57 (61)
349 PF06818 Fez1: Fez1; InterPro 43.8 3.6E+02 0.0079 27.3 21.8 25 260-284 82-106 (202)
350 PF05546 She9_MDM33: She9 / Md 43.7 3.7E+02 0.008 27.4 16.9 38 141-179 13-50 (207)
351 PF04102 SlyX: SlyX; InterPro 43.6 1.3E+02 0.0029 24.8 7.4 44 423-466 4-47 (69)
352 PF10482 CtIP_N: Tumour-suppre 43.4 2.7E+02 0.0058 25.6 11.9 41 515-555 79-119 (120)
353 PF10359 Fmp27_WPPW: RNA pol I 43.3 88 0.0019 35.9 8.4 57 508-564 160-225 (475)
354 PF06705 SF-assemblin: SF-asse 43.3 3.9E+02 0.0086 27.6 30.5 38 73-110 3-40 (247)
355 PRK15422 septal ring assembly 43.2 2.1E+02 0.0047 24.5 10.4 36 426-461 7-42 (79)
356 TIGR03545 conserved hypothetic 42.7 1.9E+02 0.0042 33.9 11.1 19 503-521 516-534 (555)
357 PF04977 DivIC: Septum formati 42.7 1.2E+02 0.0025 25.1 7.1 44 514-557 20-63 (80)
358 TIGR02894 DNA_bind_RsfA transc 42.6 1.3E+02 0.0029 29.2 8.2 47 404-450 99-145 (161)
359 PF08657 DASH_Spc34: DASH comp 42.3 1.1E+02 0.0024 32.2 8.3 26 252-277 233-258 (259)
360 TIGR03752 conj_TIGR03752 integ 42.0 3.1E+02 0.0068 31.3 12.1 39 401-440 59-97 (472)
361 PF10186 Atg14: UV radiation r 41.8 4.3E+02 0.0092 27.5 18.9 16 138-153 28-43 (302)
362 TIGR01000 bacteriocin_acc bact 41.8 5.7E+02 0.012 29.0 23.0 23 266-288 237-259 (457)
363 PF13870 DUF4201: Domain of un 41.8 3.4E+02 0.0074 26.4 21.3 32 508-539 142-173 (177)
364 COG3074 Uncharacterized protei 41.6 1.9E+02 0.0041 24.2 7.6 52 507-558 21-72 (79)
365 COG2900 SlyX Uncharacterized p 41.5 1.1E+02 0.0025 25.7 6.5 43 516-558 6-48 (72)
366 COG1382 GimC Prefoldin, chaper 41.2 3E+02 0.0065 25.6 12.1 34 513-546 72-105 (119)
367 PF11395 DUF2873: Protein of u 41.1 28 0.00061 25.3 2.5 18 638-655 5-22 (43)
368 PRK13729 conjugal transfer pil 40.9 90 0.0019 35.6 7.7 49 261-327 72-120 (475)
369 PF13874 Nup54: Nucleoporin co 40.9 1.6E+02 0.0035 27.9 8.5 49 111-159 14-66 (141)
370 PF05377 FlaC_arch: Flagella a 40.2 81 0.0017 25.2 5.2 32 519-550 1-32 (55)
371 PF04582 Reo_sigmaC: Reovirus 40.0 63 0.0014 35.1 6.1 45 502-546 110-154 (326)
372 KOG0241 Kinesin-like protein [ 39.7 1.5E+02 0.0033 36.5 9.5 65 139-217 366-430 (1714)
373 PF07058 Myosin_HC-like: Myosi 39.7 5.2E+02 0.011 27.9 14.1 34 187-220 95-137 (351)
374 PF07889 DUF1664: Protein of u 39.7 3.2E+02 0.007 25.6 12.2 33 250-282 88-120 (126)
375 TIGR00634 recN DNA repair prot 39.6 6.8E+02 0.015 29.3 26.8 70 365-449 300-372 (563)
376 TIGR02977 phageshock_pspA phag 39.5 4.2E+02 0.0092 26.9 18.7 47 410-456 93-139 (219)
377 KOG4005 Transcription factor X 39.4 3.8E+02 0.0083 27.8 11.1 35 202-236 108-142 (292)
378 PF12240 Angiomotin_C: Angiomo 39.4 4.3E+02 0.0092 26.8 19.8 57 268-327 31-87 (205)
379 PF04102 SlyX: SlyX; InterPro 39.3 1.6E+02 0.0034 24.4 7.2 51 509-559 2-52 (69)
380 KOG3684 Ca2+-activated K+ chan 38.9 6.1E+02 0.013 28.9 13.5 32 93-124 357-394 (489)
381 PF06810 Phage_GP20: Phage min 38.7 1.7E+02 0.0037 28.3 8.4 35 254-288 9-43 (155)
382 KOG4572 Predicted DNA-binding 38.7 8.3E+02 0.018 30.0 25.7 37 250-286 838-874 (1424)
383 TIGR01069 mutS2 MutS2 family p 38.4 6.8E+02 0.015 30.7 15.3 18 70-87 414-431 (771)
384 TIGR02449 conserved hypothetic 38.4 2.1E+02 0.0046 23.6 7.6 46 402-448 8-53 (65)
385 PRK02119 hypothetical protein; 38.4 1.6E+02 0.0034 24.8 7.1 45 420-464 6-50 (73)
386 PF10211 Ax_dynein_light: Axon 38.3 3.1E+02 0.0067 27.4 10.4 17 30-46 32-48 (189)
387 smart00806 AIP3 Actin interact 38.2 6.4E+02 0.014 28.5 21.0 212 72-287 75-318 (426)
388 PF15456 Uds1: Up-regulated Du 38.2 3.4E+02 0.0073 25.3 11.2 24 203-227 34-57 (124)
389 PF10191 COG7: Golgi complex c 38.2 8.3E+02 0.018 29.9 17.9 33 254-286 66-98 (766)
390 cd07599 BAR_Rvs167p The Bin/Am 38.2 4.3E+02 0.0094 26.6 17.6 32 85-116 26-57 (216)
391 TIGR02338 gimC_beta prefoldin, 38.0 3E+02 0.0066 24.7 12.0 35 194-228 70-104 (110)
392 PRK15422 septal ring assembly 37.9 1E+02 0.0023 26.4 5.8 39 521-559 7-45 (79)
393 PF05546 She9_MDM33: She9 / Md 37.8 4.6E+02 0.0099 26.7 12.2 18 138-155 33-50 (207)
394 PRK00888 ftsB cell division pr 37.6 62 0.0013 29.2 4.8 35 513-547 29-63 (105)
395 PF03148 Tektin: Tektin family 37.5 6.2E+02 0.013 28.2 37.4 52 327-380 235-286 (384)
396 PRK13169 DNA replication intia 37.4 1.6E+02 0.0034 27.0 7.4 51 509-559 6-56 (110)
397 PLN02939 transferase, transfer 37.3 9.5E+02 0.021 30.3 31.2 44 507-550 358-401 (977)
398 KOG1103 Predicted coiled-coil 37.2 5.9E+02 0.013 27.9 25.9 72 210-288 151-222 (561)
399 PF09738 DUF2051: Double stran 37.0 5.7E+02 0.012 27.6 15.3 29 426-454 143-171 (302)
400 KOG3850 Predicted membrane pro 36.8 6.3E+02 0.014 28.1 15.8 42 512-563 302-347 (455)
401 KOG3647 Predicted coiled-coil 36.5 5.4E+02 0.012 27.2 12.1 48 338-387 121-168 (338)
402 PF05103 DivIVA: DivIVA protei 36.5 29 0.00062 32.0 2.6 29 135-163 30-58 (131)
403 PF02403 Seryl_tRNA_N: Seryl-t 36.3 3.1E+02 0.0067 24.3 11.9 25 135-159 41-65 (108)
404 cd07608 BAR_ArfGAP_fungi The B 36.2 1.2E+02 0.0026 30.5 7.0 61 59-130 4-64 (192)
405 PF02994 Transposase_22: L1 tr 36.1 85 0.0018 34.8 6.7 48 509-563 142-189 (370)
406 KOG0982 Centrosomal protein Nu 35.0 7.1E+02 0.015 28.1 26.0 90 260-380 299-388 (502)
407 KOG4572 Predicted DNA-binding 34.4 9.6E+02 0.021 29.5 31.8 53 239-291 1054-1111(1424)
408 KOG1962 B-cell receptor-associ 34.4 1.2E+02 0.0025 31.1 6.7 60 407-466 149-208 (216)
409 PF06548 Kinesin-related: Kine 33.9 7.6E+02 0.016 28.1 29.5 28 306-333 398-425 (488)
410 KOG0239 Kinesin (KAR3 subfamil 33.6 9.2E+02 0.02 29.1 16.7 30 599-628 556-585 (670)
411 KOG2629 Peroxisomal membrane a 33.5 3.2E+02 0.0069 29.2 9.8 36 347-384 158-193 (300)
412 PF15358 TSKS: Testis-specific 33.2 3.2E+02 0.007 30.5 10.1 50 414-463 123-172 (558)
413 PRK14127 cell division protein 32.7 2E+02 0.0044 26.2 7.3 46 501-546 27-72 (109)
414 PRK04406 hypothetical protein; 32.6 2.6E+02 0.0057 23.7 7.5 44 421-464 9-52 (75)
415 KOG0240 Kinesin (SMY1 subfamil 32.5 8.8E+02 0.019 28.5 17.8 162 347-544 342-503 (607)
416 PRK09343 prefoldin subunit bet 32.2 4.1E+02 0.0088 24.5 12.1 38 201-238 74-111 (121)
417 PF14992 TMCO5: TMCO5 family 32.2 6.5E+02 0.014 26.9 17.0 22 266-287 71-92 (280)
418 PRK10361 DNA recombination pro 32.0 8.4E+02 0.018 28.1 23.5 63 306-368 142-208 (475)
419 PF12808 Mto2_bdg: Micro-tubul 31.5 92 0.002 24.6 4.2 28 259-286 23-50 (52)
420 PF14389 Lzipper-MIP1: Leucine 31.4 3.5E+02 0.0076 23.5 9.6 34 428-461 6-39 (88)
421 PF11180 DUF2968: Protein of u 31.3 5.6E+02 0.012 25.8 12.4 77 203-283 110-186 (192)
422 PF06005 DUF904: Protein of un 31.2 3.2E+02 0.0069 23.0 9.2 33 413-445 22-54 (72)
423 cd07588 BAR_Amphiphysin The Bi 31.2 5.8E+02 0.013 26.0 14.1 29 84-112 35-63 (211)
424 PF03980 Nnf1: Nnf1 ; InterPr 30.9 3.9E+02 0.0084 23.9 11.9 78 207-284 29-106 (109)
425 PF05335 DUF745: Protein of un 30.9 5.6E+02 0.012 25.7 17.4 70 214-287 104-173 (188)
426 PF06810 Phage_GP20: Phage min 30.9 4E+02 0.0087 25.7 9.6 19 208-226 30-48 (155)
427 PRK10246 exonuclease subunit S 30.8 1.2E+03 0.026 29.6 54.1 35 72-106 294-328 (1047)
428 PF02403 Seryl_tRNA_N: Seryl-t 30.8 1.8E+02 0.0039 25.8 6.8 59 407-465 34-95 (108)
429 PRK05561 DNA topoisomerase IV 30.7 3.4E+02 0.0073 33.1 11.0 58 52-109 357-416 (742)
430 TIGR03545 conserved hypothetic 30.7 4.3E+02 0.0092 31.1 11.4 86 190-286 167-258 (555)
431 PF10205 KLRAQ: Predicted coil 30.5 1.7E+02 0.0037 26.4 6.3 47 517-563 25-71 (102)
432 smart00338 BRLZ basic region l 30.4 1.7E+02 0.0036 23.6 5.9 35 513-547 28-62 (65)
433 PF05335 DUF745: Protein of un 30.3 5.7E+02 0.012 25.6 14.0 26 263-288 72-97 (188)
434 PF04899 MbeD_MobD: MbeD/MobD 30.1 3.3E+02 0.0072 22.8 7.6 44 192-235 15-58 (70)
435 PRK10963 hypothetical protein; 30.1 1E+02 0.0023 31.5 5.7 42 505-557 38-79 (223)
436 PF07851 TMPIT: TMPIT-like pro 30.1 7.7E+02 0.017 27.0 16.5 50 414-463 9-58 (330)
437 KOG4787 Uncharacterized conser 29.9 9.8E+02 0.021 28.2 25.4 61 501-561 697-760 (852)
438 PRK06569 F0F1 ATP synthase sub 29.7 5.3E+02 0.012 25.1 12.7 61 401-461 33-94 (155)
439 PF05377 FlaC_arch: Flagella a 29.6 2.6E+02 0.0056 22.4 6.4 9 416-424 7-15 (55)
440 PF10805 DUF2730: Protein of u 29.5 2.6E+02 0.0056 25.2 7.5 61 405-465 24-86 (106)
441 PRK00846 hypothetical protein; 29.5 2.3E+02 0.005 24.2 6.6 45 514-558 9-53 (77)
442 PRK15396 murein lipoprotein; P 29.5 2.3E+02 0.0051 24.3 6.7 20 251-270 53-72 (78)
443 PF12273 RCR: Chitin synthesis 29.5 36 0.00078 31.7 2.1 23 637-659 1-23 (130)
444 smart00502 BBC B-Box C-termina 29.4 4E+02 0.0087 23.5 15.1 31 204-234 71-101 (127)
445 PF04380 BMFP: Membrane fusoge 29.2 84 0.0018 26.8 4.1 31 249-279 48-78 (79)
446 PF09738 DUF2051: Double stran 29.0 7.6E+02 0.017 26.6 18.9 35 194-228 101-135 (302)
447 COG4717 Uncharacterized conser 28.9 1.2E+03 0.026 28.9 33.3 38 252-289 614-651 (984)
448 PF04420 CHD5: CHD5-like prote 28.9 1.2E+02 0.0027 29.4 5.7 43 137-179 40-84 (161)
449 COG4477 EzrA Negative regulato 28.8 9.9E+02 0.021 27.9 39.9 31 346-381 277-307 (570)
450 PRK02119 hypothetical protein; 28.7 3.5E+02 0.0077 22.7 7.8 50 509-558 7-56 (73)
451 PF06008 Laminin_I: Laminin Do 28.7 6.9E+02 0.015 26.0 28.6 9 116-124 17-25 (264)
452 PF12709 Kinetocho_Slk19: Cent 28.6 4E+02 0.0088 23.3 11.9 31 203-233 47-77 (87)
453 PF02994 Transposase_22: L1 tr 28.5 1.4E+02 0.003 33.2 6.7 48 419-466 140-187 (370)
454 PF04012 PspA_IM30: PspA/IM30 28.5 6.2E+02 0.013 25.4 21.4 20 266-285 92-111 (221)
455 KOG2629 Peroxisomal membrane a 28.4 4.6E+02 0.0099 28.1 9.9 60 320-381 138-197 (300)
456 TIGR03321 alt_F1F0_F0_B altern 28.1 6.8E+02 0.015 25.8 13.8 8 314-321 119-126 (246)
457 PRK04325 hypothetical protein; 28.1 2.5E+02 0.0054 23.6 6.7 45 514-558 5-49 (74)
458 PF10234 Cluap1: Clusterin-ass 28.0 7.5E+02 0.016 26.2 14.9 59 401-466 161-219 (267)
459 PF06785 UPF0242: Uncharacteri 28.0 8.3E+02 0.018 26.7 19.3 13 311-323 208-220 (401)
460 PRK00295 hypothetical protein; 28.0 2.8E+02 0.0062 22.9 6.9 43 421-463 3-45 (68)
461 PF04728 LPP: Lipoprotein leuc 27.9 3.2E+02 0.007 22.0 7.8 28 519-546 4-31 (56)
462 PRK00888 ftsB cell division pr 27.9 2.1E+02 0.0046 25.8 6.6 40 507-546 30-69 (105)
463 PF11932 DUF3450: Protein of u 27.8 6.9E+02 0.015 25.8 16.3 33 206-238 57-89 (251)
464 PF09304 Cortex-I_coil: Cortex 27.8 4.7E+02 0.01 23.8 12.1 93 190-284 1-96 (107)
465 PRK10803 tol-pal system protei 27.7 2.6E+02 0.0056 29.4 8.3 59 401-463 43-101 (263)
466 PF02183 HALZ: Homeobox associ 27.7 1.7E+02 0.0036 22.3 5.0 36 523-558 3-38 (45)
467 PRK11578 macrolide transporter 27.7 3.9E+02 0.0084 29.2 10.1 8 106-113 23-30 (370)
468 PF10046 BLOC1_2: Biogenesis o 27.7 4.3E+02 0.0094 23.4 10.4 41 135-175 40-80 (99)
469 PRK14474 F0F1 ATP synthase sub 27.6 7.2E+02 0.016 25.9 13.8 11 367-377 190-200 (250)
470 TIGR02132 phaR_Bmeg polyhydrox 27.4 6.3E+02 0.014 25.1 15.3 62 45-113 39-103 (189)
471 PRK00409 recombination and DNA 27.2 1.2E+03 0.027 28.5 17.7 19 70-88 419-437 (782)
472 PF11180 DUF2968: Protein of u 27.1 6.6E+02 0.014 25.3 12.2 85 423-546 98-182 (192)
473 PRK11578 macrolide transporter 27.0 8.5E+02 0.018 26.5 13.1 22 261-282 161-182 (370)
474 COG3524 KpsE Capsule polysacch 27.0 8.4E+02 0.018 26.5 15.1 79 211-289 178-275 (372)
475 TIGR00219 mreC rod shape-deter 27.0 1.9E+02 0.0041 30.8 7.2 22 134-155 70-91 (283)
476 PRK03947 prefoldin subunit alp 26.9 5.2E+02 0.011 24.0 13.3 44 195-238 91-134 (140)
477 PF13600 DUF4140: N-terminal d 26.8 1.2E+02 0.0027 26.7 5.0 28 519-546 71-98 (104)
478 PRK00736 hypothetical protein; 26.8 2.7E+02 0.0059 23.0 6.6 44 420-463 2-45 (68)
479 PF08657 DASH_Spc34: DASH comp 26.7 2.9E+02 0.0062 29.2 8.3 25 506-530 234-258 (259)
480 KOG4809 Rab6 GTPase-interactin 26.6 1.1E+03 0.023 27.6 30.5 29 207-235 326-354 (654)
481 KOG4196 bZIP transcription fac 26.5 4.9E+02 0.011 24.6 8.6 35 344-380 75-109 (135)
482 KOG4571 Activating transcripti 26.5 1.6E+02 0.0035 31.4 6.3 45 509-560 239-283 (294)
483 KOG3433 Protein involved in me 26.4 6.7E+02 0.014 25.1 11.0 39 519-557 117-155 (203)
484 PF14389 Lzipper-MIP1: Leucine 26.1 3.2E+02 0.0069 23.8 7.2 29 246-281 56-84 (88)
485 KOG4657 Uncharacterized conser 25.9 7.5E+02 0.016 25.6 15.3 120 404-562 32-158 (246)
486 KOG2264 Exostosin EXT1L [Signa 25.8 2E+02 0.0042 33.5 7.1 49 407-455 98-146 (907)
487 PRK02793 phi X174 lysis protei 25.8 3.5E+02 0.0075 22.7 7.1 45 419-463 4-48 (72)
488 PRK11546 zraP zinc resistance 25.6 3.7E+02 0.008 25.8 8.1 55 324-380 49-103 (143)
489 PHA01750 hypothetical protein 25.6 2.2E+02 0.0048 23.5 5.5 39 503-541 34-72 (75)
490 PF10458 Val_tRNA-synt_C: Valy 25.1 2.2E+02 0.0047 23.2 5.7 23 135-157 2-24 (66)
491 PF13747 DUF4164: Domain of un 24.8 4.7E+02 0.01 22.8 10.4 39 246-284 41-79 (89)
492 PF02996 Prefoldin: Prefoldin 24.8 3.8E+02 0.0082 24.0 8.0 44 501-544 74-117 (120)
493 KOG3809 Microtubule-binding pr 24.8 5.7E+02 0.012 28.9 10.3 97 192-288 473-569 (583)
494 PF14193 DUF4315: Domain of un 24.7 1.7E+02 0.0036 25.4 5.1 32 253-284 3-34 (83)
495 PF02346 Vac_Fusion: Chordopox 24.6 2.5E+02 0.0054 22.6 5.6 41 424-464 2-42 (57)
496 TIGR01294 P_lamban phospholamb 24.6 1.2E+02 0.0026 23.1 3.5 21 638-658 30-50 (52)
497 PLN03188 kinesin-12 family pro 24.6 1.6E+03 0.036 29.1 34.3 329 91-456 851-1252(1320)
498 COG4467 Regulator of replicati 24.3 3.4E+02 0.0074 24.7 7.0 47 509-555 6-52 (114)
499 PRK11020 hypothetical protein; 24.2 5.7E+02 0.012 23.5 9.0 62 217-278 3-66 (118)
500 COG5346 Predicted membrane pro 24.1 2E+02 0.0042 26.8 5.6 101 545-664 18-118 (136)
No 1
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=100.00 E-value=3.5e-113 Score=931.61 Aligned_cols=619 Identities=42% Similarity=0.610 Sum_probs=568.2
Q ss_pred CCChHHHHHhhhhcCChhHHHhhHhHHHHHHHHhhHhhHHHHHHHHHHhHHhhcCCcHHHHHhhHHHHHHhHHHHHHHhh
Q 005704 17 SSSPVSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTK 96 (682)
Q Consensus 17 ~~~~~~~a~~~W~~~dl~~lq~~LD~~~~ei~~~q~~s~~sRK~La~~Tk~Fkk~~~eekl~~~~~LLK~yQ~EID~LTk 96 (682)
+++++.+++++|+.|||..||+.||++|.+|+++|++|+++||.|++.||+|||++|++|+++++||||+||.|||+||+
T Consensus 1 ~sa~~~~~~~~Wk~~dle~LQreLd~~~~~l~~~Q~~S~~srk~L~e~trefkk~~pe~k~k~~~~llK~yQ~EiD~Ltk 80 (629)
T KOG0963|consen 1 SAANVGSVTQYWKRFDLERLQRELDAEATEIAQRQDESEISRKRLAEETREFKKNTPEDKLKMVNPLLKSYQSEIDNLTK 80 (629)
T ss_pred CcchHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHhhhhccCCCCHHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 005704 97 RAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQ 176 (682)
Q Consensus 97 RsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~~~le~E~~kL~~el~~l~~el~~lknq~~~~~~Lkerl~~lE~~ 176 (682)
|||+||++||+||+.|+|||||+|+|..+..+..+++..+.|+.+|+.++.+++.+++++++|.++++.|+++++++++.
T Consensus 81 Rsk~aE~afl~vye~L~eaPDP~pll~sa~~~l~k~~~~~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~ 160 (629)
T KOG0963|consen 81 RSKFAEAAFLDVYEKLIEAPDPVPLLASAAELLNKQQKASEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQL 160 (629)
T ss_pred HHHhhHHHHHHHHHHHhhCCCCchHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999988888888999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHH
Q 005704 177 MEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLL 256 (682)
Q Consensus 177 ~e~~~~~~~~~~E~el~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l 256 (682)
++..+...+..++..+...|.++...+.+.+..+++++..++.++..|+..++.+|.++++++++|+++.+++.+|+.++
T Consensus 161 ~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~li 240 (629)
T KOG0963|consen 161 LEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLI 240 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 257 MDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMN 336 (682)
Q Consensus 257 ~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~ 336 (682)
|.|||+|++|+.+||+|++.|+.+++.++++......+ ........|..+|.+|.+|..+++++++++..++..|..
T Consensus 241 m~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~---~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~ 317 (629)
T KOG0963|consen 241 MTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKID---DIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKA 317 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCC---chHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987654333 333566668889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhccccCc-cchhhhhhcchhhhchHHHHHHHHhhhhh
Q 005704 337 EIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSI-EAEDWEVATNDEEMSKMESLLLDKNRKME 415 (682)
Q Consensus 337 ~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~iEf~~~-d~~~~~~a~~~~~~~~LE~lLl~kNrkL~ 415 (682)
+|..|+.++..+...+.+++.+++.+ +||++||+||.|||+||||.. ++.+|+ ....++|++|++|||+|+
T Consensus 318 qI~~le~~l~~~~~~leel~~kL~~~---sDYeeIK~ELsiLk~ief~~se~a~~~~-----~~~~~leslLl~knr~lq 389 (629)
T KOG0963|consen 318 QISALEKELKAKISELEELKEKLNSR---SDYEEIKKELSILKAIEFGDSEEANDED-----ETAKTLESLLLEKNRKLQ 389 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh---ccHHHHHHHHHHHHHhhcCCcccccccc-----cccchHHHHHHHHHhhhh
Confidence 99999999999999999999999996 899999999999999999954 333332 235799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccCC
Q 005704 416 HELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKH 495 (682)
Q Consensus 416 ~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (682)
++++.||+.+..+..++..+....+.+.++..+++.+|++||+|+..++......|. ..++.+|++..+.+.+..+
T Consensus 390 ~e~a~Lr~~n~~~~~~~~~~~~~~~el~~~~~~~ke~i~klE~dl~~~~~~~~~~~~----~~~~~~~~~~~v~e~s~~~ 465 (629)
T KOG0963|consen 390 NENASLRVANSGLSGRITELSKKGEELEAKATEQKELIAKLEQDLLKVQVSPPAEGA----TARREEGSGQPVPESSIMG 465 (629)
T ss_pred HHHHHHhccccccchhHHHHHhhhhhhHHHHHHHHHHHHHHHhhHhhcccCCCCCcc----hhhhcccCCcCCCcccccC
Confidence 999999999999999999999999999999999999999999999999975443322 2233333443333333221
Q ss_pred C----CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHhhhcccccccccCC
Q 005704 496 T----YPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNNEKVISRGS 571 (682)
Q Consensus 496 ~----~~~~~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRylqsy~~~~~~~~~~ 571 (682)
+ +..+..+.|+|||++||||||.||.+++.+++.....+..+..++.++++||++|||+|||+|+|.+.+
T Consensus 466 ~~p~~~~~~~~s~~l~ii~~qRdrfr~~n~~~e~~~r~a~~~~~~l~~el~~~~a~n~~lyekir~~q~y~~~~------ 539 (629)
T KOG0963|consen 466 GGPSLPNGGVLSRILSVISSQRDRFRARNVELEAQVRLANDKIGFLESELEKLKADNTKLYEKIRYLQSYDGKS------ 539 (629)
T ss_pred CCCCccccccccccchhhhcccchhhhhhhhHHHHHhhccCchhHHhhhhhhhhcccccccccccCccccccCC------
Confidence 1 223566779999999999999999999999999999999999999999999999999999999995532
Q ss_pred CCccccccCCCCchhhHHHHHhhhhhcChhhhhhHhHHHHHhhhcCcchhHHHhhhhhhhcchhhHHHHHHHHHHHHHHH
Q 005704 572 KKYAEDLESGFTSDIESKYKKMYEDDINPFAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYARTFAFFYTILLHVLV 651 (682)
Q Consensus 572 ~~~~~~~~~~~~~d~e~~Y~~~YE~~L~Pf~~F~~~E~~r~~~~l~~~er~~l~~~r~vl~nr~~R~~f~~Y~~~LH~lv 651 (682)
+...|++.+|..+||++|+||++|+++|+.|+|+.|++++|++++++|++|+||++|++||||||+|||+|
T Consensus 540 ---------~~~~d~e~~y~~~yee~l~p~a~f~k~e~~~k~~~l~~~~~~~~s~~r~~l~nk~~r~~~~~y~i~lh~~v 610 (629)
T KOG0963|consen 540 ---------GESSDVESQYSAAYEESISPFASFRKKERERKYKRLGSFERITLSLGRTLLFNKMTRTLFFFYTIGLHLLV 610 (629)
T ss_pred ---------CCCcchhhhhhhHHHhhcCHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33567899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccc
Q 005704 652 FTCLYRMSALSYLS 665 (682)
Q Consensus 652 ~~~ly~~~~~~~~~ 665 (682)
|+|+|.++|+.+|.
T Consensus 611 ~~~l~~~~~s~~~~ 624 (629)
T KOG0963|consen 611 FIVLYLGAASNTMY 624 (629)
T ss_pred HHHHHHHHhhcccc
Confidence 99999888888776
No 2
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=100.00 E-value=4e-60 Score=483.34 Aligned_cols=233 Identities=41% Similarity=0.614 Sum_probs=191.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccC-------CCCCCCcchh
Q 005704 432 LETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKK-------HTYPDQDQSS 504 (682)
Q Consensus 432 l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~s 504 (682)
|+.+++++..++++++++++||++||+||.+++..... ...+++.+.+.+|++..++....+ ++.+.+++++
T Consensus 1 l~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~s 79 (248)
T PF08172_consen 1 LEELQKELSELEAKLEEQKELNAKLENDLAKVQASSSA-SRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSS 79 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-ccCCCCcccccccchhhccCccccCCCCCCccCCCCCCccc
Confidence 46789999999999999999999999999999975322 223555555555555433322111 1112368999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHhhhccccccccc----CCCCccc--cc
Q 005704 505 MLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNNEKVISR----GSKKYAE--DL 578 (682)
Q Consensus 505 iL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRylqsy~~~~~~~~----~~~~~~~--~~ 578 (682)
||||||+||||||+||.|||+|++++++++..|++|+++|++||+||||||||||||++++.... +.++++. ..
T Consensus 80 iLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~~~~~~~~~~~~~~~~~~~~~~~ 159 (248)
T PF08172_consen 80 ILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYNNKGSGSSSSAVSNSPGRSSVSP 159 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccCCCcccccCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999996421111 1122222 22
Q ss_pred cCCCCchhhH-HHHHhhhhhcChhhhhhHhHHHHHhhhcCcchhHHHhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHH
Q 005704 579 ESGFTSDIES-KYKKMYEDDINPFAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYARTFAFFYTILLHVLVFTCLYR 657 (682)
Q Consensus 579 ~~~~~~d~e~-~Y~~~YE~~L~Pf~~F~~~E~~r~~~~l~~~er~~l~~~r~vl~nr~~R~~f~~Y~~~LH~lv~~~ly~ 657 (682)
.++...|++. +|+.+||+.||||++|+++|++|+|++|+|+||+||++||+||+||++|+|||||||+||||||++||+
T Consensus 160 ~~~~~~d~e~~rY~~~YE~~l~PF~~F~~~E~~R~~~~L~~~eR~~ls~~r~vL~nr~~R~~f~~Y~l~LH~lvf~~l~~ 239 (248)
T PF08172_consen 160 EPGGSSDVESNRYSSAYEESLNPFAAFRKRERQRRYKRLSPPERIFLSLTRFVLSNRTTRMLFFFYCLGLHLLVFFVLYY 239 (248)
T ss_pred CCCCCCchhHHHHHHHHHhccChHHHHhHhhHHHHHhcCChHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 2233456776 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhcccc
Q 005704 658 MSALSYLS 665 (682)
Q Consensus 658 ~~~~~~~~ 665 (682)
++|++++.
T Consensus 240 ~~~~~~~~ 247 (248)
T PF08172_consen 240 MSHSTSMQ 247 (248)
T ss_pred HHhhhhcc
Confidence 99998874
No 3
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.42 E-value=3.1e-08 Score=124.19 Aligned_cols=185 Identities=16% Similarity=0.261 Sum_probs=152.7
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhh----------HHHHHHH
Q 005704 187 IKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAK----------QSEVNLL 256 (682)
Q Consensus 187 ~~E~el~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~----------~aEle~l 256 (682)
+.++..+.+++..++++....+.+++.+.+++.+..+|...+.....+|..+..+.+++.+.. ++.+..+
T Consensus 1030 e~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el 1109 (1930)
T KOG0161|consen 1030 EREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKEL 1109 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788889999999999999999999999999999999999999999999999988774332 5667778
Q ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 005704 257 MDEVERAQTRL-------LSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSN 329 (682)
Q Consensus 257 ~~DLEra~~R~-------~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~ 329 (682)
..+||..+... .+|..+++.|+.+|..+...+.++. +.++..+.++... .+.|+.++..++..+..
T Consensus 1110 ~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~----e~~~k~e~e~~~l---~~~leee~~~~e~~~~~ 1182 (1930)
T KOG0161|consen 1110 EEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQL----ELNKKREAEVQKL---RRDLEEETLDHEAQIEE 1182 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH----HHHHHHHHHHHHH---HHHHHHHHHhHHHHHHH
Confidence 88887753333 6777788888888887755554332 3556777777665 78899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh
Q 005704 330 EREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQA 380 (682)
Q Consensus 330 ~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~ 380 (682)
+|..|+..++.|..+++++....+.+++.+..+ ..+.+++..++..+-+
T Consensus 1183 lr~~~~~~~~el~~qle~l~~~k~~lekek~~l--q~e~~~l~~ev~~~~~ 1231 (1930)
T KOG0161|consen 1183 LRKKHADSLAELQEQLEQLQKDKAKLEKEKSDL--QREIADLAAELEQLSS 1231 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999988887 5778888888877653
No 4
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=99.23 E-value=1.4e-07 Score=108.02 Aligned_cols=297 Identities=19% Similarity=0.259 Sum_probs=181.5
Q ss_pred hhhhhhhHHHHHHHhhhhccCCCC---------HHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 005704 95 TKRAKFGENAFLNIYQKLYEAPDP---------YPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRR 165 (682)
Q Consensus 95 TkRsK~aE~aFl~~Y~~L~eaPDP---------~PlLe~s~~~~~~~~~le~E~~kL~~el~~l~~el~~lknq~~~~~~ 165 (682)
.|+ -+++++|++...+- ++|-| .|++..+.+... +.....+-..|+.++.+|..++..++-+..+
T Consensus 176 ~kp-~p~~t~~l~~lpPq-~tpaqtPl~sP~~~~P~~Tta~a~v~-l~saskte~eLr~QvrdLtEkLetlR~kR~E--- 249 (1243)
T KOG0971|consen 176 QKP-VPAATGELSSLPPQ-ETPAQTPLASPIIPTPVLTTAGAVVP-LPSASKTEEELRAQVRDLTEKLETLRLKRAE--- 249 (1243)
T ss_pred CCC-ChhhhcccccCCCc-cCCCCCCccCCCCCCCCCCCccccCC-CCccccchHHHHHHHHHHHHHHHHHHhhhhh---
Confidence 345 56778998887664 23333 222222211110 0001112334888888888888888766653
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH
Q 005704 166 LEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEE 245 (682)
Q Consensus 166 Lkerl~~lE~~~e~~~~~~~~~~E~el~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee 245 (682)
-+.|+++|++-. ++ -.+++|++.++.++..+|+++|..++...++++..-+ ++-.+
T Consensus 250 Dk~Kl~Elekmk-------iq------leqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke-----------~~k~e 305 (1243)
T KOG0971|consen 250 DKAKLKELEKMK-------IQ------LEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKE-----------RYKEE 305 (1243)
T ss_pred hHHHHHHHHHHH-------HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHH
Confidence 345566665422 11 1457778888899999999999999888887776555 44445
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC-----CCCcCchhhhHhhhhhhHHHHHHHHHHH
Q 005704 246 RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRN-----SDTLDSNSYLENSLSAKEKIISELNSEL 320 (682)
Q Consensus 246 ~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~-----~~~~~~~s~le~el~~ke~ei~~L~~e~ 320 (682)
.+..++-|||++-|-|.|..|+..|+.+++.|++.+.+..-+.+... .++.. ...-..+..+|+..|
T Consensus 306 mad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~--------~~~ss~qfkqlEqqN 377 (1243)
T KOG0971|consen 306 MADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDG--------QAASSYQFKQLEQQN 377 (1243)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--------cccchHHHHHHHHHH
Confidence 55556677888888888877777777777777777666555433210 00000 111244688999999
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhccccCccchhhhhhcch
Q 005704 321 HNIETALSNEREQHMNEI---KKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATND 397 (682)
Q Consensus 321 ~~Le~~L~~~r~~~~~~~---~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~iEf~~~d~~~~~~a~~~ 397 (682)
.+|...|..+|+..+.+. .++...++.++.++.+|...++.+ ....|.....+.-||.- +| |..|
T Consensus 378 ~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~L--sr~~d~aEs~iadlkEQ----VD------AAlG 445 (1243)
T KOG0971|consen 378 ARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERL--SRELDQAESTIADLKEQ----VD------AALG 445 (1243)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH----HH------Hhhc
Confidence 999999999999877654 555555666666666666655544 12333333333333321 11 2132
Q ss_pred hhhchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 398 EEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTA 444 (682)
Q Consensus 398 ~~~~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~ 444 (682)
. ..++++ |.+||-.|+..+-.|+..+.+++. ++++..++.+-+.
T Consensus 446 A-E~MV~q-LtdknlnlEekVklLeetv~dlEa-lee~~EQL~Esn~ 489 (1243)
T KOG0971|consen 446 A-EEMVEQ-LTDKNLNLEEKVKLLEETVGDLEA-LEEMNEQLQESNR 489 (1243)
T ss_pred H-HHHHHH-HHhhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 2 456777 999999999999999988888764 3444444444433
No 5
>PRK02224 chromosome segregation protein; Provisional
Probab=99.09 E-value=4.4e-05 Score=93.09 Aligned_cols=103 Identities=13% Similarity=0.156 Sum_probs=60.7
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCcccccccccccc
Q 005704 410 KNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSE 489 (682)
Q Consensus 410 kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (682)
+...+..++..++....+.....+.+......+..++.++...+..++.++..+.. ..
T Consensus 538 ~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~-~~--------------------- 595 (880)
T PRK02224 538 RAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLER-IR--------------------- 595 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---------------------
Confidence 34455566666666665555555555555555555556666666666665555542 11
Q ss_pred ccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005704 490 KADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTK 545 (682)
Q Consensus 490 ~~~~~~~~~~~~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk 545 (682)
....-+.-+....++++.+..+|+.........+..++.+++.+.
T Consensus 596 -----------~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l~ 640 (880)
T PRK02224 596 -----------TLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELE 640 (880)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233344556666666666666666666666666777777776664
No 6
>PRK02224 chromosome segregation protein; Provisional
Probab=99.07 E-value=0.0001 Score=90.05 Aligned_cols=172 Identities=14% Similarity=0.239 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 206 REQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDE---ERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQ 282 (682)
Q Consensus 206 re~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~e---e~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~ 282 (682)
....+...+..++..+..++..+...+.++.++.....+ ........++.+..+++.++.++..++.....++..|.
T Consensus 364 ~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~ 443 (880)
T PRK02224 364 EAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVE 443 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444455555554444444444444333221 11122344555566666666666666666666666666
Q ss_pred hhhhhhccCCC---C-CcC------chhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 005704 283 SANDEAGSRNS---D-TLD------SNSYLENSLSAKEKIISELNSELHNIETALSNEREQ--HMNEIKKLNALLIEKEA 350 (682)
Q Consensus 283 ~a~s~~~~~~~---~-~~~------~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~--~~~~~~~L~~ql~~~~~ 350 (682)
.+......... . +++ ....+...+......+..|+.++..+...+..+... ...++..+...+..+..
T Consensus 444 ~~~~~l~~~~Cp~C~r~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~e~l~~~~~~~~~l~~l~~~~~~l~~ 523 (880)
T PRK02224 444 EAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEE 523 (880)
T ss_pred HHHHHHhcccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65531111100 0 111 111232333333334444454444444443332222 12233444444444444
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHHH
Q 005704 351 ALEDMKKELQARPTSKMVDDLRKKVKILQ 379 (682)
Q Consensus 351 ~~~~le~~l~~~~~~sDyeelK~EL~~Lk 379 (682)
.+......++.. ...|++++.++.-|+
T Consensus 524 ~~~~~~e~le~~--~~~~~~l~~e~~~l~ 550 (880)
T PRK02224 524 LIAERRETIEEK--RERAEELRERAAELE 550 (880)
T ss_pred HHHHHHHHHHhH--HHHHHHHHHHHHHHH
Confidence 444333333332 345777777777774
No 7
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.03 E-value=1e-05 Score=101.15 Aligned_cols=24 Identities=8% Similarity=0.004 Sum_probs=19.1
Q ss_pred CCCchhhHHHHHhhhhhcChhhhh
Q 005704 581 GFTSDIESKYKKMYEDDINPFAAF 604 (682)
Q Consensus 581 ~~~~d~e~~Y~~~YE~~L~Pf~~F 604 (682)
++.+.++..|..+.+..|++...+
T Consensus 528 ~dli~v~~~y~~Aie~~lg~~l~~ 551 (1164)
T TIGR02169 528 AQLGSVGERYATAIEVAAGNRLNN 551 (1164)
T ss_pred HHhcCcCHHHHHHHHHHhhhhhCC
Confidence 556677889999999999986533
No 8
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.00 E-value=6.8e-05 Score=95.01 Aligned_cols=42 Identities=12% Similarity=0.242 Sum_probs=32.0
Q ss_pred hHHHHHhhhhcCChhHHHhhHhHHHHHHHHhhHhhHHHHHHHHH
Q 005704 20 PVSVISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAE 63 (682)
Q Consensus 20 ~~~~a~~~W~~~dl~~lq~~LD~~~~ei~~~q~~s~~sRK~La~ 63 (682)
.|...+..| ..+ +.++..++....+|...+++.....+.+.+
T Consensus 561 ~~~~~~~~~-~~~-~~l~~~~~~~~~el~~~~~~~~~~~~el~~ 602 (1311)
T TIGR00606 561 ELTSLLGYF-PNK-KQLEDWLHSKSKEINQTRDRLAKLNKELAS 602 (1311)
T ss_pred HHHHhcCCC-CCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555577 666 888999999999998888888877777754
No 9
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=98.96 E-value=4e-06 Score=95.87 Aligned_cols=119 Identities=23% Similarity=0.247 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHhh---HHHHHHhhhcccccccccCCCCccccccCCCCchhhHHHHHhhhhhc
Q 005704 522 ETEEEVRQLKEKIGVLTAELEKTKADNVQL---YGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYEDDI 598 (682)
Q Consensus 522 ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kL---yEkiRylqsy~~~~~~~~~~~~~~~~~~~~~~~d~e~~Y~~~YE~~L 598 (682)
++|..++.+...+..++..++.|-+.+..| +|++... |.+......+.......+ ....|+..+ ..---..
T Consensus 389 elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~--l~~~~~~~~~~~~~~~~~--~~~~d~~~r--~~~~~~~ 462 (511)
T PF09787_consen 389 ELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQ--LKEEASNNRPSSILMKYS--NSEDDAESR--VPLLMKD 462 (511)
T ss_pred hHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHH--HHhhccCCCCchhhHhhc--cCCCchhhh--hhhhccC
Confidence 577778888888888888888888888888 6666542 211110000000000011 112333333 1112223
Q ss_pred ChhhhhhHhHHHHH-hhhcCcchhHHHhhhhhhhcchhhHHHHHHHHHHHHHH
Q 005704 599 NPFAAFSKKERDQR-YKELGIRDRITLSSGRFLLGNKYARTFAFFYTILLHVL 650 (682)
Q Consensus 599 ~Pf~~F~~~E~~r~-~~~l~~~er~~l~~~r~vl~nr~~R~~f~~Y~~~LH~l 650 (682)
+||... ..|+ .+.++.+|.+.+.+|.|+-+++.+|.||++||+.||+|
T Consensus 463 ~~~d~~----~~~r~~~a~~~iD~~~ir~g~fLrr~p~~R~~~i~Y~~~LhlW 511 (511)
T PF09787_consen 463 SPHDIG----VARRVKRAASVIDSFSIRLGIFLRRYPMARIFVIIYMALLHLW 511 (511)
T ss_pred CCccch----HHHHHHHHHHHHhHhhHHHHHHHhcCHHHHHHHHHHHHHHcCC
Confidence 444331 2333 66799999999999999999999999999999999987
No 10
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.95 E-value=1.1e-05 Score=86.51 Aligned_cols=288 Identities=18% Similarity=0.265 Sum_probs=183.3
Q ss_pred HHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 143 KIELEEYRTEATHLKNQQS-TIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSV 221 (682)
Q Consensus 143 ~~el~~l~~el~~lknq~~-~~~~Lkerl~~lE~~~e~~~~~~~~~~E~el~~~~eek~~~~~ere~~L~~ql~~ae~~l 221 (682)
+.++..||..|+. |. -++.|+.....|+.+... ....+......-...|......+..+|..+....
T Consensus 3 K~eL~~LNdRla~----YIekVr~LE~~N~~Le~~i~~--------~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~ek 70 (312)
T PF00038_consen 3 KEELQSLNDRLAS----YIEKVRFLEQENKRLESEIEE--------LREKKGEEVSRIKEMYEEELRELRRQIDDLSKEK 70 (312)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHhhhhHHHHHH--------HHhcccccCcccccchhhHHHHhHHhhhhHHHHh
Confidence 3456667777766 33 445555555555444322 2222223333334556777778888888888888
Q ss_pred HHHHHHHHHHHHHHHHhhhcchHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc-------cC
Q 005704 222 ATMQKLHELAQSQLFEVRAQSDEERV---AKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAG-------SR 291 (682)
Q Consensus 222 ~eL~~~le~~Q~eL~~l~~k~~ee~~---a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~-------~~ 291 (682)
..+...++..+.++.+++.+++.+.. ....++..+..+++.+.....+|+.++..|.++|...+..-. .+
T Consensus 71 a~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~ 150 (312)
T PF00038_consen 71 ARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQ 150 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred hHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhc
Confidence 88888888888888899888887743 346889999999999999999999999999999987765321 11
Q ss_pred C--CCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhH
Q 005704 292 N--SDTLDSNSYLENSLSAKEKIISELNSELHNIETA-LSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMV 368 (682)
Q Consensus 292 ~--~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~-L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDy 368 (682)
. ...++.......++... +.++..++...-.. .......+...+..+..+.......+..++.++... ...+
T Consensus 151 ~~~~~~~e~~~~~~~dL~~~---L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~--r~~~ 225 (312)
T PF00038_consen 151 IQSSVTVEVDQFRSSDLSAA---LREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKEL--RRQI 225 (312)
T ss_dssp ----------------HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
T ss_pred cccccceeecccccccchhh---hhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHH--Hhhh
Confidence 1 11111111111223222 55555555433332 223333455555666655555444444444444333 3344
Q ss_pred HHHHHHHHHHHhccccCccchhhhhhcchhhhchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 369 DDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINE 448 (682)
Q Consensus 369 eelK~EL~~Lk~iEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~ 448 (682)
..+..+|..|+.. ...|+..|.+-...+..++..+...+..++.++..+..++.....++++
T Consensus 226 ~~l~~el~~l~~~------------------~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~ 287 (312)
T PF00038_consen 226 QSLQAELESLRAK------------------NASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQE 287 (312)
T ss_dssp HHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhhhhccccc------------------hhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Confidence 5555555555432 4578888888888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcc
Q 005704 449 QQKLIQKLEDDILKGYS 465 (682)
Q Consensus 449 ~~~l~~kLE~DL~~~~~ 465 (682)
+-...-.|+..|.+...
T Consensus 288 Ll~~K~~Ld~EIatYR~ 304 (312)
T PF00038_consen 288 LLDVKLALDAEIATYRK 304 (312)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHH
Confidence 99999999999887764
No 11
>PRK03918 chromosome segregation protein; Provisional
Probab=98.93 E-value=0.00047 Score=84.19 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 250 QSEVNLLMDEVERAQTRLLSLQREKDLLR 278 (682)
Q Consensus 250 ~aEle~l~~DLEra~~R~~~LE~e~E~Lr 278 (682)
..+++.+...+...+.++..++.+...++
T Consensus 458 ~~ei~~l~~~~~~l~~~~~~l~~~~~~~~ 486 (880)
T PRK03918 458 TAELKRIEKELKEIEEKERKLRKELRELE 486 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555554443
No 12
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.80 E-value=0.0011 Score=84.52 Aligned_cols=50 Identities=24% Similarity=0.345 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHh
Q 005704 509 ICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFV 558 (682)
Q Consensus 509 vt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRyl 558 (682)
+..-+|.-......++.++..+...+..+...++.++.+|-+|-..|.-+
T Consensus 1454 l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl 1503 (1930)
T KOG0161|consen 1454 LQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDL 1503 (1930)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444433
No 13
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=98.78 E-value=0.00011 Score=82.84 Aligned_cols=298 Identities=18% Similarity=0.217 Sum_probs=208.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 144 IELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVAT 223 (682)
Q Consensus 144 ~el~~l~~el~~lknq~~~~~~Lkerl~~lE~~~e~~~~~~~~~~E~el~~~~eek~~~~~ere~~L~~ql~~ae~~l~e 223 (682)
.++.++..++.++.+-..+++.++.+++.++....+.-...-...++.....+.+..++|.++++.|.+.......++..
T Consensus 121 ~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~ 200 (629)
T KOG0963|consen 121 EENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEE 200 (629)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999999999999998888877777888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhH
Q 005704 224 MQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLE 303 (682)
Q Consensus 224 L~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le 303 (682)
+.......|..+.+......+-......|+.....++.-.-..+++.+.++..|..+.+.........++. ..+.
T Consensus 201 le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~-----~~~~ 275 (629)
T KOG0963|consen 201 LEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSS-----KKLA 275 (629)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----hhhc
Confidence 99999999999888877665555555778888888888899999999999999999999888877544321 1222
Q ss_pred --hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhc
Q 005704 304 --NSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAV 381 (682)
Q Consensus 304 --~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~i 381 (682)
-.+.+......+++.++..|...+..++..+...+.....+|..+.. ++... .+..++++..|.--
T Consensus 276 ~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~-------~l~~~--~~~leel~~kL~~~--- 343 (629)
T KOG0963|consen 276 KIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEK-------ELKAK--ISELEELKEKLNSR--- 343 (629)
T ss_pred cCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH--HHHHHHHHHHHhhh---
Confidence 33555666677889999999999999988888888777766666544 43332 24466667666533
Q ss_pred cccCccchhhhh------hc-ch-hhhchHHHHHHHHhhhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 382 GYNSIEAEDWEV------AT-ND-EEMSKMESLLLDKNRKMEHELT----QLKVKLSEKTSLLETAEGKIAELTAKINEQ 449 (682)
Q Consensus 382 Ef~~~d~~~~~~------a~-~~-~~~~~LE~lLl~kNrkL~~eLt----~LR~~~~~l~~~l~~l~~~~~~l~~el~~~ 449 (682)
.|-++... +. -| .....-+. +--+.+++-|. .|..++..|......+...+..+....+++
T Consensus 344 ----sDYeeIK~ELsiLk~ief~~se~a~~~~---~~~~~leslLl~knr~lq~e~a~Lr~~n~~~~~~~~~~~~~~~el 416 (629)
T KOG0963|consen 344 ----SDYEEIKKELSILKAIEFGDSEEANDED---ETAKTLESLLLEKNRKLQNENASLRVANSGLSGRITELSKKGEEL 416 (629)
T ss_pred ----ccHHHHHHHHHHHHHhhcCCcccccccc---cccchHHHHHHHHHhhhhHHHHHHhccccccchhHHHHHhhhhhh
Confidence 23333210 00 00 00111111 22234444443 333444444444444555555555555555
Q ss_pred HHHHHHHHHHHHhhcc
Q 005704 450 QKLIQKLEDDILKGYS 465 (682)
Q Consensus 450 ~~l~~kLE~DL~~~~~ 465 (682)
.........=+.....
T Consensus 417 ~~~~~~~ke~i~klE~ 432 (629)
T KOG0963|consen 417 EAKATEQKELIAKLEQ 432 (629)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5555555544444443
No 14
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=98.76 E-value=1.7e-05 Score=85.38 Aligned_cols=211 Identities=15% Similarity=0.055 Sum_probs=128.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccc
Q 005704 413 KMEHELTQLKVKLSEKTSLLETAEG----KIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELS 488 (682)
Q Consensus 413 kL~~eLt~LR~~~~~l~~~l~~l~~----~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (682)
+++.+++.||.++.+++.....++. ++...--+++.....+.-|+..++-...... +.+..+..-|-
T Consensus 327 ~~q~q~~~Lrs~~~d~EAq~r~l~s~~~~q~~~~h~~ka~~~~~~~~l~~~~ec~~~e~e-----~~~~~~~r~~~---- 397 (554)
T KOG4677|consen 327 HIQDQYTLLRSQIIDIEAQDRHLESAGQTQIFRKHPRKASILNMPLVLTLFYECFYHETE-----AEGTFSSRVNL---- 397 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHhhhHhhhhhhchHHHHHHHHHHHHHHH-----Hhhhhhhhccc----
Confidence 4677778888888877776665554 3334444455555666666666655543221 00111100000
Q ss_pred cccccCCCCCCCcchhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHhhhccc
Q 005704 489 EKADKKHTYPDQDQSSMLKVICNQRDRFRAR-----LRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNN 563 (682)
Q Consensus 489 ~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~r-----~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRylqsy~~ 563 (682)
.-.+.....-..+++-+-|++.| ..+|+.-++++..++-..+..+..+=.-|-+|-=.+.-||-|-+
T Consensus 398 --------~~qski~dk~~el~kl~~~l~~r~~~~s~~~l~~~~~qLt~tl~qkq~~le~v~~~~~~ln~~lerLq~~~N 469 (554)
T KOG4677|consen 398 --------KKQSKIPDKQYELTKLAARLKLRAWNDSVDALFTTKNQLTYTLKQKQIGLERVVEILHKLNAPLERLQEYVN 469 (554)
T ss_pred --------hhhccCcchHHHHHHHHHHHHHHhhhhhHHHHhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhc
Confidence 00001111223455555555444 45788889999999999999999999888888878888898877
Q ss_pred cccccc-CCCCccccccCCCCchhhHHHHHhhhhhcChhhhhhHhHHHHHhhhcCcchhHHHhhhhhhhcchhhHHHHHH
Q 005704 564 EKVISR-GSKKYAEDLESGFTSDIESKYKKMYEDDINPFAAFSKKERDQRYKELGIRDRITLSSGRFLLGNKYARTFAFF 642 (682)
Q Consensus 564 ~~~~~~-~~~~~~~~~~~~~~~d~e~~Y~~~YE~~L~Pf~~F~~~E~~r~~~~l~~~er~~l~~~r~vl~nr~~R~~f~~ 642 (682)
.+.... ....+. .+.+.++. +.-|.+-.- ++.-...++..|+..+.++.++-+.+.+|.||..
T Consensus 470 ~~~~v~~~~~~n~----~~~~~~~v----------~~l~~d~~~--~~q~r~a~s~VD~~s~~l~~~lr~~psArif~~~ 533 (554)
T KOG4677|consen 470 LVEDVDTKLNLNT----KFKCHDVV----------IDLYRDLKD--RQQLRAARSKVDKGSAELEKILRLLPSARIFWKN 533 (554)
T ss_pred cccccceeeccCC----Cccccccc----------chHhhhhhh--hHHHHHHHhhcchhhHHHHHHHhcCchhHHHHHH
Confidence 432111 000000 01111111 111111111 2445567899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 005704 643 YTILLHVLVFTCLY 656 (682)
Q Consensus 643 Y~~~LH~lv~~~ly 656 (682)
|+++||+|||+|+.
T Consensus 534 YmallHLWvmivlL 547 (554)
T KOG4677|consen 534 YMALLHLWVMIVLL 547 (554)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999886
No 15
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.76 E-value=0.00023 Score=80.40 Aligned_cols=181 Identities=22% Similarity=0.260 Sum_probs=109.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHH
Q 005704 248 AKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETAL 327 (682)
Q Consensus 248 a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L 327 (682)
....|++.+..+|-.++.++..-++.++-|+.+|.++...-. ...++|..-..+..+|..........|
T Consensus 280 ~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RD-----------rt~aeLh~aRLe~aql~~qLad~~l~l 348 (546)
T PF07888_consen 280 QLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRD-----------RTMAELHQARLEAAQLKLQLADASLEL 348 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 345777788888888888888888888888888876654431 333444444334444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhccccCccchhhhhhcchhhhchHHHHH
Q 005704 328 SNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLL 407 (682)
Q Consensus 328 ~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~iEf~~~d~~~~~~a~~~~~~~~LE~lL 407 (682)
...+.....+...|.......+.. +.+|++|+..+..- ...+ -.+...|+.-|
T Consensus 349 ke~~~q~~qEk~~l~~~~e~~k~~----------------ie~L~~el~~~e~~----lqEe-------r~E~qkL~~ql 401 (546)
T PF07888_consen 349 KEGRSQWAQEKQALQHSAEADKDE----------------IEKLSRELQMLEEH----LQEE-------RMERQKLEKQL 401 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH----------------HHHHHHHHHHHHHH----HHHH-------HHHHHHHHHHH
Confidence 444444444444443333333233 44444444444421 0000 00122344444
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 005704 408 LDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSS 466 (682)
Q Consensus 408 l~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~ 466 (682)
...+..=.-.|...+..+.++++.+.-++.+...+..+.+++..-|.+||..|..+-+.
T Consensus 402 ~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~~~ 460 (546)
T PF07888_consen 402 GKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVADE 460 (546)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 22222122367888888999999999999999999999999999999999999998654
No 16
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.65 E-value=0.0037 Score=78.73 Aligned_cols=391 Identities=20% Similarity=0.258 Sum_probs=206.4
Q ss_pred hhhhHHHHHHHhhhhccCCCCHHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHH
Q 005704 98 AKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQS----TIRRLEERNRQL 173 (682)
Q Consensus 98 sK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~~~le~E~~kL~~el~~l~~el~~lknq~~----~~~~Lkerl~~l 173 (682)
+-.+|.....+|+++. ....+.+.+..+...++.++.++..++..+.+... ++++++..+-.+
T Consensus 47 ~v~~eq~~~~~ekK~~-------------~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l 113 (1822)
T KOG4674|consen 47 EVNHEQQLSELEKKIL-------------RLEQRLSDLSRQAKLLRNELSDLRNELEQLSSERSNLSWEIDALKLENSQL 113 (1822)
T ss_pred hhhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHH
Confidence 3345555555555543 22344556777888888888888888887665543 556666655556
Q ss_pred HHHHHHhHHHHH-HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---hHHHHhh
Q 005704 174 EQQMEEKVKEIV-EIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQS---DEERVAK 249 (682)
Q Consensus 174 E~~~e~~~~~~~-~~~E~el~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~---~ee~~a~ 249 (682)
.+.+.+....+- -...-++ ....+.......+.|..++..+-..+-++.+.+..++...-..+.++ .++....
T Consensus 114 ~~~~se~~~qkr~l~~~le~---~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll 190 (1822)
T KOG4674|consen 114 RRAKSELQEQKRQLMELLER---QKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLL 190 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555544442211 1111111 11122233445566667777777777777776666555544433332 3444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHH
Q 005704 250 QSEVNLLMDEVERAQTRLLSLQRE----KDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIET 325 (682)
Q Consensus 250 ~aEle~l~~DLEra~~R~~~LE~e----~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~ 325 (682)
..+.--|..||-..+.++..+.++ +..|++.|......-.. +......+..+..+|..-+..+..
T Consensus 191 ~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~-----------~q~~~~~l~q~~~eLs~~ie~~~~ 259 (1822)
T KOG4674|consen 191 ESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAE-----------LQEKNKSLKQQNEELSKKIESLNL 259 (1822)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666667777777777777777777 77777777766554321 111111111112222222222222
Q ss_pred HHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHhcCCChhhH----------------
Q 005704 326 ALSNEREQHMNEI---------------------KKLNALLIEKEAALEDMKKELQARPTSKMV---------------- 368 (682)
Q Consensus 326 ~L~~~r~~~~~~~---------------------~~L~~ql~~~~~~~~~le~~l~~~~~~sDy---------------- 368 (682)
.+..++++..... .++.....++.+.+..+++.+... ...|
T Consensus 260 ~ls~~k~t~~s~~~kf~~El~~q~kL~eL~ks~~ee~~~~~~el~~~i~~~~klled~--~~~~~e~~d~l~e~~~sl~~ 337 (1822)
T KOG4674|consen 260 ELSKLKDTAESSEEKFEKELSTQKKLNELWKSKLEELSHEVAELQRAIEELEKLLEDA--SERNKENTDQLKELEQSLSK 337 (1822)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHH
Confidence 2222222222222 222222222223333333333322 0111
Q ss_pred --HHHHHHHHHHHh-ccccCccchhhhhhcchhhhchHH--HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 369 --DDLRKKVKILQA-VGYNSIEAEDWEVATNDEEMSKME--SLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELT 443 (682)
Q Consensus 369 --eelK~EL~~Lk~-iEf~~~d~~~~~~a~~~~~~~~LE--~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~ 443 (682)
+.+..++.-|.. ++-+. +...+ . ...+++. ..+..++.+....|+.++.....++..+..+.-++.++.
T Consensus 338 ~~~~~~k~~~~le~~l~~an----~~~~~-~-~~~~~~s~~~a~~s~~~~~~~sLtk~ys~~~~~qqqle~~~lele~~~ 411 (1822)
T KOG4674|consen 338 LNEKLEKKVSRLEGELEDAN----DSLSA-T-GESSMVSEKAALASSLIRPGSSLTKLYSKYSKLQQQLESLKLELERLQ 411 (1822)
T ss_pred HHHHHHHHHHHHHHHHHhhh----hhHHh-h-cccchhhhHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222222221 11111 10001 0 1122332 456789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 005704 444 AKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRET 523 (682)
Q Consensus 444 ~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~r~~EL 523 (682)
..+......+..+..-|........ ..+.-.--+..++|-..+.+..+
T Consensus 412 ~~l~s~~eev~~~~p~lk~qr~~~e--------------------------------~~~~~~~~l~~el~~~~q~~~~~ 459 (1822)
T KOG4674|consen 412 NILSSFKEEVKQKAPILKEQRSELE--------------------------------RMQETKAELSEELDFSNQKIQKL 459 (1822)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHH--------------------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888887777766654432 12223344455555555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHH
Q 005704 524 EEEVRQLKEKIGVLTAELEKTKADNVQLYGKI 555 (682)
Q Consensus 524 E~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEki 555 (682)
|..+..+......+.+++..+..++-.|-.-|
T Consensus 460 e~~~~~l~~~~~~~~renk~l~~~~sdlsrqv 491 (1822)
T KOG4674|consen 460 EKELESLKKQLNDLERENKLLEQQISDLSRQV 491 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666655555554444
No 17
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.65 E-value=0.0016 Score=77.18 Aligned_cols=46 Identities=35% Similarity=0.389 Sum_probs=33.8
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHHHhhhhHHH----HHHHHHHHHHHHHHH
Q 005704 132 LSELESENRKMKIELEEYRTEATHLKNQQST----IRRLEERNRQLEQQM 177 (682)
Q Consensus 132 ~~~le~E~~kL~~el~~l~~el~~lknq~~~----~~~Lkerl~~lE~~~ 177 (682)
++.+..++.+-..++..+++++.++.++..+ |+.|++.++..++..
T Consensus 289 ~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~ 338 (775)
T PF10174_consen 289 MDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEA 338 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557777777777888888888888877654 677777777776655
No 18
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.64 E-value=0.0014 Score=82.13 Aligned_cols=16 Identities=31% Similarity=0.318 Sum_probs=10.8
Q ss_pred CCCCCCCChHHHHHhh
Q 005704 12 KPNTSSSSPVSVISNF 27 (682)
Q Consensus 12 ~~~~~~~~~~~~a~~~ 27 (682)
.++|++-|++-.|+.+
T Consensus 30 G~NGsGKS~ildAi~~ 45 (1164)
T TIGR02169 30 GPNGSGKSNIGDAILF 45 (1164)
T ss_pred CCCCCCHHHHHHHHHH
Confidence 4556667777777764
No 19
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.60 E-value=0.0018 Score=76.80 Aligned_cols=184 Identities=21% Similarity=0.269 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-------------chH---HHHhhHHHHHHH
Q 005704 193 AEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQ-------------SDE---ERVAKQSEVNLL 256 (682)
Q Consensus 193 ~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k-------------~~e---e~~a~~aEle~l 256 (682)
+....-+...|++....++.....+...+..|+..+ ..|.++..+... +|. ......+|.+.+
T Consensus 48 rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~ld~~~~q~~rl~~E~er~ 126 (775)
T PF10174_consen 48 RKEEAAELSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQELDKAQEQFERLQAERERL 126 (775)
T ss_pred HHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHH
Confidence 333333444444444444444455555555555555 444443322221 111 122234566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc-------CC--CCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHH
Q 005704 257 MDEVERAQTRLLSLQREKDLLRSQLQSANDEAGS-------RN--SDTLDSNSYLENSLSAKEKIISELNSELHNIETAL 327 (682)
Q Consensus 257 ~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~-------~~--~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L 327 (682)
..|++..+..+..++.+++.++..|..+...... .+ +.........-..+...+..+.+|+.-....+...
T Consensus 127 ~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~ 206 (775)
T PF10174_consen 127 QRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREAEARIMRLESLLERKEKEH 206 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666666666666666666666655554321 10 00000000111123333444555555555554444
Q ss_pred HHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh-ccccCc
Q 005704 328 SNEREQHMNE---------IKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQA-VGYNSI 386 (682)
Q Consensus 328 ~~~r~~~~~~---------~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~-iEf~~~ 386 (682)
..+|...... ...++..|+.+...+..+++.+.. +..|+..|++ ++.+..
T Consensus 207 ~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~---------le~Ei~~L~~~~~~~~~ 266 (775)
T PF10174_consen 207 MEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRD---------LEDEIYRLRSRGELSEA 266 (775)
T ss_pred hhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhccccccc
Confidence 3333322221 124566666777777777776554 5677778876 444433
No 20
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.57 E-value=0.0024 Score=79.92 Aligned_cols=19 Identities=5% Similarity=-0.001 Sum_probs=13.2
Q ss_pred HhhhcCcchhHHHhhhhhh
Q 005704 612 RYKELGIRDRITLSSGRFL 630 (682)
Q Consensus 612 ~~~~l~~~er~~l~~~r~v 630 (682)
....||..++..+.+++.+
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~ 1104 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLF 1104 (1179)
T ss_pred cccccCccHHHHHHHHHHH
Confidence 4556777777777777765
No 21
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.54 E-value=0.01 Score=75.57 Aligned_cols=74 Identities=20% Similarity=0.170 Sum_probs=40.8
Q ss_pred HhHHHHHHHhhhhhhhHHHHHHHhhhh-ccCCCCHHHHHHHHHHHh-hhhhhHHhhHHHHHHHHHHHHHHHHhhhh
Q 005704 86 GYQEEVDNLTKRAKFGENAFLNIYQKL-YEAPDPYPALASIAEQDL-KLSELESENRKMKIELEEYRTEATHLKNQ 159 (682)
Q Consensus 86 ~yQ~EID~LTkRsK~aE~aFl~~Y~~L-~eaPDP~PlLe~s~~~~~-~~~~le~E~~kL~~el~~l~~el~~lknq 159 (682)
.++..++.|..+-+......=.++..+ -+.|||..-|....+... ++...+.+...+..++..++.++..+..+
T Consensus 266 ~l~~ql~~l~~~~~~~~~~~~rL~~~i~~~l~~s~eEL~~ll~~f~~~~~e~~~~~~~le~e~~~l~~el~~l~~~ 341 (1311)
T TIGR00606 266 KLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQE 341 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777665555555555555544 357888887776666433 23334444444445555554444444433
No 22
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.52 E-value=1.8e-08 Score=121.25 Aligned_cols=215 Identities=19% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchHHHHhh----------HHHHHHHHHHHHHHH---HHH----HHHHHHHHHHHHH
Q 005704 218 KDSVATMQKLHELAQSQLFEVRAQSDEERVAK----------QSEVNLLMDEVERAQ---TRL----LSLQREKDLLRSQ 280 (682)
Q Consensus 218 e~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~----------~aEle~l~~DLEra~---~R~----~~LE~e~E~Lr~e 280 (682)
++...+|...+.....+|..+..+++++.+.+ .+.|+.|..|||..+ .++ .+|..+++.|+.+
T Consensus 3 ~~~~~~l~~~l~kke~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~ 82 (859)
T PF01576_consen 3 ERQKEELEEQLKKKEEELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKER 82 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666667777776664332 567788888888762 233 7899999999999
Q ss_pred HHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005704 281 LQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQ 360 (682)
Q Consensus 281 L~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~ 360 (682)
|..+.+.+..+. +.+..+++++..+ ..+|++....+++.+..+|.+|...+..|..+++++......+++.+.
T Consensus 83 Lee~~~~t~aq~----E~~kkrE~El~~L---rr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~ 155 (859)
T PF01576_consen 83 LEEAGGATQAQI----ELNKKREAELAKL---RRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKS 155 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhCcHHhhH----HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999887664 5777898999877 889999999999999999999999999999999999999999999999
Q ss_pred cCCChhhHHHHHHHHHHHHhccccCccchhhhhhcchhhhchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 361 ARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIA 440 (682)
Q Consensus 361 ~~~~~sDyeelK~EL~~Lk~iEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~ 440 (682)
.+ ..+.+++..+|+.+..--... -.+.|.++.+|..++..+.+....+..+.....
T Consensus 156 ~l--~~e~~dL~~~l~~~~k~k~~~----------------------Ek~~K~lE~qL~El~~klee~er~~~el~~~k~ 211 (859)
T PF01576_consen 156 QL--EAELDDLQAQLDSLQKAKQEA----------------------EKKRKQLEAQLNELQAKLEESERQRNELTEQKA 211 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HH--HhHHHHHHHHHHHHHHHHHHH----------------------HhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88 578888888888777532211 112455555566666555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 005704 441 ELTAKINEQQKLIQKLEDDILKG 463 (682)
Q Consensus 441 ~l~~el~~~~~l~~kLE~DL~~~ 463 (682)
.+.+++.++...+..+|..+..+
T Consensus 212 kL~~E~~eL~~qLee~e~~~~~l 234 (859)
T PF01576_consen 212 KLQSENSELTRQLEEAESQLSQL 234 (859)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555444444433
No 23
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.49 E-value=0.01 Score=74.29 Aligned_cols=16 Identities=13% Similarity=0.356 Sum_probs=9.5
Q ss_pred chhhHHHHHhhhhhcC
Q 005704 584 SDIESKYKKMYEDDIN 599 (682)
Q Consensus 584 ~d~e~~Y~~~YE~~L~ 599 (682)
+.+...|..+.+..++
T Consensus 529 i~~~~~~~~a~~~~~g 544 (1179)
T TIGR02168 529 ISVDEGYEAAIEAALG 544 (1179)
T ss_pred eeeChhHHHHHHHHHH
Confidence 3444677777776443
No 24
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.49 E-value=0.0045 Score=77.88 Aligned_cols=50 Identities=16% Similarity=0.245 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHhhhcc
Q 005704 508 VICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYN 562 (682)
Q Consensus 508 Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRylqsy~ 562 (682)
-.-.+.++++.|..+|..+...+...+..++.-+..+.. .-+-+|...|.
T Consensus 967 ~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~-----~~~~~f~~~f~ 1016 (1163)
T COG1196 967 RAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDK-----EKRERFKETFD 1016 (1163)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 345667777777777777777777777777777777766 12345566664
No 25
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.49 E-value=0.0033 Score=79.10 Aligned_cols=94 Identities=18% Similarity=0.227 Sum_probs=48.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHhhhcccc----ccccc---CCCCc
Q 005704 502 QSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNNE----KVISR---GSKKY 574 (682)
Q Consensus 502 ~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRylqsy~~~----~~~~~---~~~~~ 574 (682)
....+..+..+....+.+..+++.++......+..+..++..++. ++.-++..... ..... ..-+|
T Consensus 444 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~G 516 (1163)
T COG1196 444 LNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEA-------RLDRLEAEQRASQGVRAVLEALESGLPG 516 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhhhHHHHHHHHhccCCC
Confidence 444555666666666666666666666666666666666665555 22221111100 00000 00011
Q ss_pred cccccCCCCchhhHHHHHhhhhhcChhhh
Q 005704 575 AEDLESGFTSDIESKYKKMYEDDINPFAA 603 (682)
Q Consensus 575 ~~~~~~~~~~d~e~~Y~~~YE~~L~Pf~~ 603 (682)
. ..+.++.+.+..+|..+.+..|++=.+
T Consensus 517 v-~G~v~~li~v~~~y~~Aie~alG~~l~ 544 (1163)
T COG1196 517 V-YGPVAELIKVKEKYETALEAALGNRLQ 544 (1163)
T ss_pred c-cchHHHhcCcChHHHHHHHHHcccccC
Confidence 1 011145566777999999999885433
No 26
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.45 E-value=0.016 Score=73.15 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005704 253 VNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEA 288 (682)
Q Consensus 253 le~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~ 288 (682)
...+...-+.+...+..+.++.+.++.++++...-.
T Consensus 499 ~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L 534 (1201)
T PF12128_consen 499 EQELRKERDQAEEELRQARRELEELRAQIAELQRQL 534 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444455555666666666666666665544
No 27
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.42 E-value=0.00098 Score=71.47 Aligned_cols=108 Identities=18% Similarity=0.257 Sum_probs=80.7
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCcccc
Q 005704 402 KMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSE 481 (682)
Q Consensus 402 ~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~ 481 (682)
.++.....+-..+......-.........++..+...+..+..++..++..+..||..|..+...
T Consensus 188 e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~--------------- 252 (312)
T PF00038_consen 188 ELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQR--------------- 252 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred hhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHH---------------
Confidence 34555555555566566666666666777777777777777777777888888888887766532
Q ss_pred ccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhh
Q 005704 482 AGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQL 551 (682)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kL 551 (682)
+..+++.|...+..++.++......+.....++..|-.-++.|
T Consensus 253 ---------------------------~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~L 295 (312)
T PF00038_consen 253 ---------------------------LDEEREEYQAEIAELEEELAELREEMARQLREYQELLDVKLAL 295 (312)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3577888999999999999999999999988888888876666
No 28
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.34 E-value=0.013 Score=67.51 Aligned_cols=292 Identities=16% Similarity=0.187 Sum_probs=146.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 005704 213 QLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERV---AKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAG 289 (682)
Q Consensus 213 ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~---a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~ 289 (682)
+|+.++.+....-+.|.....+|..++..++.-.. ....+.+....-.+-...++.+|..++..|++.|..+.....
T Consensus 117 ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~ 196 (522)
T PF05701_consen 117 ELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHI 196 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444455555555554443322 223444555555555666777777777777777776544321
Q ss_pred cCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHH
Q 005704 290 SRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVD 369 (682)
Q Consensus 290 ~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDye 369 (682)
.. ......-...++..+..+..+.... ...+..|..++. ....|+.++..- ..+..
T Consensus 197 eA-------eee~~~~~~~~~~~~~~~~~~leea-----------e~~l~~L~~e~~----~~k~Le~kL~~a--~~~l~ 252 (522)
T PF05701_consen 197 EA-------EEERIEIAAEREQDAEEWEKELEEA-----------EEELEELKEELE----AAKDLESKLAEA--SAELE 252 (522)
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH----HHHHHHHHHHHH--HHHHH
Confidence 00 0000000111122222222222222 223333333331 223344444432 24556
Q ss_pred HHHHHHHHHHhccccCccchhhhhhcchhhhchHHHHHHHHhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 370 DLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNR---KMEHELTQLKVKLSEKTSLLETAEGKIAELTAKI 446 (682)
Q Consensus 370 elK~EL~~Lk~iEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNr---kL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el 446 (682)
.++.+|...+..+.....+.............++..=|-+.+. +...++..++.....|..+++....++..+....
T Consensus 253 ~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e 332 (522)
T PF05701_consen 253 SLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKERE 332 (522)
T ss_pred HHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666665555422221100000000000001122222333333 3457788888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 005704 447 NEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEE 526 (682)
Q Consensus 447 ~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~r~~ELE~e 526 (682)
......+..|+.+|.............-.... ....+....|.-++..-+.++........+
T Consensus 333 ~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k------------------~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E 394 (522)
T PF05701_consen 333 KEASSEVSSLEAELNKTRSELEAAKAEEEKAK------------------EAMSELPKALQQLSSEAEEAKKEAEEAKEE 394 (522)
T ss_pred HHHHhHHhhHHHHHHHHHHHHHHHHhhhcchh------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888777654320000000000 011256666777777778888777777777
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 005704 527 VRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 527 l~~~~~~i~~lr~Ei~~Lk~ 546 (682)
+......+...+..+..+..
T Consensus 395 ~~~~k~E~e~~ka~i~t~E~ 414 (522)
T PF05701_consen 395 VEKAKEEAEQTKAAIKTAEE 414 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777777766666655
No 29
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.32 E-value=0.031 Score=70.85 Aligned_cols=160 Identities=16% Similarity=0.194 Sum_probs=79.2
Q ss_pred hhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHHHH--------------HHHHH
Q 005704 299 NSYLENSLSAKEKIISELNSELHNIETALSNEREQHMN-E-------IKKLNALLIEKEAA--------------LEDMK 356 (682)
Q Consensus 299 ~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~-~-------~~~L~~ql~~~~~~--------------~~~le 356 (682)
...|+.++..+...|-.|+.+|..|...++........ - ..+|..-+.-++.. ...|.
T Consensus 1101 ~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~LR~Ekei~~tk~~~lk~e~~~L~ 1180 (1822)
T KOG4674|consen 1101 EDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIVSFLRKEKEIAETKLDTLKRENARLK 1180 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHH
Confidence 34677777778888888999998888887776665331 0 11222222222222 22222
Q ss_pred HHHhcCCChhhHHHHHHHHHHHHhcccc--CccchhhhhhcchhhhchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 005704 357 KELQARPTSKMVDDLRKKVKILQAVGYN--SIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLET 434 (682)
Q Consensus 357 ~~l~~~~~~sDyeelK~EL~~Lk~iEf~--~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~ 434 (682)
.....+ ..+++++...|...+. .|. .+.++..+. - ...-..=.+|.+-|+-|..++...-..+.++..+++.
T Consensus 1181 qq~~~~--~k~i~dL~~sL~~~r~-~~q~~a~s~~e~~~--i-~~~v~~vNll~EsN~~LRee~~~~~~k~qEl~~~i~k 1254 (1822)
T KOG4674|consen 1181 QQVASL--NRTIDDLQRSLTAERA-SSQKSAVSDDEHKE--I-LEKVEEVNLLRESNKVLREENEANLEKIQELRDKIEK 1254 (1822)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHH-hhccchhhhhhhhH--H-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222 1234444444444332 120 010000000 0 0011112356677777766666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005704 435 AEGKIAELTAKINEQQKLIQKLEDDILKGY 464 (682)
Q Consensus 435 l~~~~~~l~~el~~~~~l~~kLE~DL~~~~ 464 (682)
++.++..+...+.+++..+.....++..+.
T Consensus 1255 l~~el~plq~~l~el~~e~~~~~ael~~l~ 1284 (1822)
T KOG4674|consen 1255 LNFELAPLQNELKELKAELQEKVAELKKLE 1284 (1822)
T ss_pred HHhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666665555555555555555555544
No 30
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.32 E-value=0.0028 Score=71.76 Aligned_cols=271 Identities=17% Similarity=0.202 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 209 ALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEE---RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAN 285 (682)
Q Consensus 209 ~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee---~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~ 285 (682)
.++..+..++.++++|+..++.++......+.+.++. .....+|+.++..+.......+..|-++|..|+.+|..+.
T Consensus 110 ~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 110 KLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3444555556666666666665555544444433322 2334677777777776666677777777777777777666
Q ss_pred hhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 005704 286 DEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTS 365 (682)
Q Consensus 286 s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~ 365 (682)
....... .+ ..+++..++.|...|+-....|..+|.++...... -++-
T Consensus 190 ~~ld~Et--------ll----------r~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~r--------------d~t~ 237 (546)
T KOG0977|consen 190 KQLDDET--------LL----------RVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARR--------------DTTA 237 (546)
T ss_pred HHHHHHH--------HH----------HHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhh--------------cccc
Confidence 5542110 11 12222222222222222222333333222111100 0000
Q ss_pred hhHHHHHHHHH-HHHhccccCccchhhhhhcchhhhchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 366 KMVDDLRKKVK-ILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTA 444 (682)
Q Consensus 366 sDyeelK~EL~-~Lk~iEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~ 444 (682)
..-+.-+.+|. .|+.|- .+-+.. .-..-..+|.+.-.|-..+........+.......++..+...+..+.+
T Consensus 238 ~~r~~F~~eL~~Ai~eiR---aqye~~----~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~ 310 (546)
T KOG0977|consen 238 DNREYFKNELALAIREIR---AQYEAI----SRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRA 310 (546)
T ss_pred cchHHHHHHHHHHHHHHH---HHHHHH----HHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhh
Confidence 01111122211 111110 000000 0011234455444444444432222223333444444444444555555
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 005704 445 KINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETE 524 (682)
Q Consensus 445 el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~r~~ELE 524 (682)
.+.+++.-|.-|+..|..++...... .-.....|.--..+.-++|.++..|-
T Consensus 311 klselE~~n~~L~~~I~dL~~ql~e~----------------------------~r~~e~~L~~kd~~i~~mReec~~l~ 362 (546)
T KOG0977|consen 311 KLSELESRNSALEKRIEDLEYQLDED----------------------------QRSFEQALNDKDAEIAKMREECQQLS 362 (546)
T ss_pred hhccccccChhHHHHHHHHHhhhhhh----------------------------hhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 55555555555555554444321100 00122234444667788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 005704 525 EEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 525 ~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
.|+..+-.....|..||..-+.
T Consensus 363 ~Elq~LlD~ki~Ld~EI~~YRk 384 (546)
T KOG0977|consen 363 VELQKLLDTKISLDAEIAAYRK 384 (546)
T ss_pred HHHHHhhchHhHHHhHHHHHHH
Confidence 9999999999999999988776
No 31
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.28 E-value=0.0039 Score=72.67 Aligned_cols=344 Identities=17% Similarity=0.273 Sum_probs=196.4
Q ss_pred hHHhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005704 135 LESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQL 214 (682)
Q Consensus 135 le~E~~kL~~el~~l~~el~~lknq~~~~~~Lkerl~~lE~~~e~~~~~~~~~~E~el~~~~eek~~~~~ere~~L~~ql 214 (682)
|...++.|++.++-|+-.-++=+...-+.++.+=.+++++ +....+..+....++++...-.+. +++++--
T Consensus 229 Lr~QvrdLtEkLetlR~kR~EDk~Kl~Elekmkiqleqlq-EfkSkim~qqa~Lqrel~raR~e~--------keaqe~k 299 (1243)
T KOG0971|consen 229 LRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQ-EFKSKIMEQQADLQRELKRARKEA--------KEAQEAK 299 (1243)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
Confidence 5566788888888887666665555556666655444442 222222222223333332221111 1111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCC
Q 005704 215 RQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSD 294 (682)
Q Consensus 215 ~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~ 294 (682)
+.....+.++...++-. -+ |-+.+ ....+-|..|+|.++.|+.+|+-.+|-|+.+.+..+++.....+.
T Consensus 300 e~~k~emad~ad~iEma-----Tl----dKEmA--EERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~ 368 (1243)
T KOG0971|consen 300 ERYKEEMADTADAIEMA-----TL----DKEMA--EERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSY 368 (1243)
T ss_pred HHHHHHHHHHHHHHHHH-----Hh----hHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchH
Confidence 22222333333332211 11 11111 122467888899999999999999999999999998887655422
Q ss_pred CcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHH
Q 005704 295 TLDSNSYLENSLSAKEKIISELNSELHNIETALSNE---REQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDL 371 (682)
Q Consensus 295 ~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~---r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeel 371 (682)
++.+++.+-.+|.+-+.+|..-.+.. +.+...+.......+.++.+....|..++... .+-+.++
T Consensus 369 ----------qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~a--Es~iadl 436 (1243)
T KOG0971|consen 369 ----------QFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQA--ESTIADL 436 (1243)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 24445555666777666665433332 33344455555555666666666666666665 4557888
Q ss_pred HHHHHHHHhccccCccchhhhhhcchhhhchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 372 RKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQK 451 (682)
Q Consensus 372 K~EL~~Lk~iEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~ 451 (682)
|.+++.-= |. +. ..+ --...+++ |-+|-+-|+.++.+|..-.+=.++-.+..+.....|..++...+.
T Consensus 437 kEQVDAAl----GA---E~--MV~-qLtdknln--lEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~g 504 (1243)
T KOG0971|consen 437 KEQVDAAL----GA---EE--MVE-QLTDKNLN--LEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKG 504 (1243)
T ss_pred HHHHHHhh----cH---HH--HHH-HHHhhccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88887643 21 11 100 01122332 788999999999999876555555555555556678888888877
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 452 LIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLK 531 (682)
Q Consensus 452 l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~ 531 (682)
-+..|+..+...+...- + -+..| -.||.+...|-.++..+.
T Consensus 505 ~~kel~~r~~aaqet~y-----------------D--------------rdqTI--------~KfRelva~Lqdqlqe~~ 545 (1243)
T KOG0971|consen 505 ARKELQKRVEAAQETVY-----------------D--------------RDQTI--------KKFRELVAHLQDQLQELT 545 (1243)
T ss_pred HHHHHHHHHHHHHHHHH-----------------h--------------HHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 77777777665553210 0 22222 358888888888888777
Q ss_pred HHHHHHHHHHHHhhhhhHhhHHHHHHhhhcccc
Q 005704 532 EKIGVLTAELEKTKADNVQLYGKIRFVQDYNNE 564 (682)
Q Consensus 532 ~~i~~lr~Ei~~Lk~DN~kLyEkiRylqsy~~~ 564 (682)
.+..+ .+-.+.+-+.++ -+-+.|-.-|..+
T Consensus 546 dq~~S--seees~q~~s~~-~et~dyk~~fa~s 575 (1243)
T KOG0971|consen 546 DQQES--SEEESQQPPSVD-PETFDYKIKFAES 575 (1243)
T ss_pred hhhhh--hHHHhcCCCCCc-hhhhHHHHHHHHh
Confidence 75544 333455555555 5666776666543
No 32
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.26 E-value=0.039 Score=69.74 Aligned_cols=43 Identities=23% Similarity=0.324 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 504 SMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 504 siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
.-+.-+..+..+...+..++|+++......+..++.++...+.
T Consensus 607 ~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~ 649 (1201)
T PF12128_consen 607 ERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQ 649 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777888888888888887777777777766665554
No 33
>PRK03918 chromosome segregation protein; Provisional
Probab=98.22 E-value=0.037 Score=67.74 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=12.0
Q ss_pred HHhhHHHHHHhHHHHHHHhhhh
Q 005704 77 LSLFNSLLKGYQEEVDNLTKRA 98 (682)
Q Consensus 77 l~~~~~LLK~yQ~EID~LTkRs 98 (682)
...++.++|.|...|+.|....
T Consensus 164 ~~~~~~~~~~~~~~~~~l~~~l 185 (880)
T PRK03918 164 YKNLGEVIKEIKRRIERLEKFI 185 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666666555544
No 34
>PRK01156 chromosome segregation protein; Provisional
Probab=98.21 E-value=0.04 Score=67.67 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005704 251 SEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAND 286 (682)
Q Consensus 251 aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s 286 (682)
.+++.+...++..+.++..+..+...|+..+.....
T Consensus 409 ~~~~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~ 444 (895)
T PRK01156 409 KELNEINVKLQDISSKVSSLNQRIRALRENLDELSR 444 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666677777777776665555443
No 35
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.20 E-value=0.037 Score=66.76 Aligned_cols=166 Identities=16% Similarity=0.273 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 257 MDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMN 336 (682)
Q Consensus 257 ~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~ 336 (682)
.+.|.+..+.+..|+++.+..+.+..++.... ...+.+|..+..++..|...+..++..+..
T Consensus 404 ~E~lK~~~~k~kKleke~ek~~~~~~e~e~~p------------------e~~~~~i~~~~~ei~~L~~~~~~~~~~l~e 465 (1293)
T KOG0996|consen 404 EEKLKRLTSKIKKLEKEIEKARRKKSELEKAP------------------EKARIEIQKCQTEIEQLEELLEKEERELDE 465 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCc------------------hhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666667777666666655443332 222444666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhccccCccchhhhhhcchhhhchHHHHHHHHhhhhhH
Q 005704 337 EIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEH 416 (682)
Q Consensus 337 ~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~iEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~ 416 (682)
....++..-.....++..+++++... ..+..+.+.++++..+= |+ +|..+--...+
T Consensus 466 ~~~~l~~~t~~~~~e~~~~ekel~~~--~~~~n~~~~e~~vaese---------------------l~-~L~~~~~~~~~ 521 (1293)
T KOG0996|consen 466 ILDSLKQETEGIREEIEKLEKELMPL--LKQVNEARSELDVAESE---------------------LD-ILLSRHETGLK 521 (1293)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH---------------------HH-HHHHHHHHHHH
Confidence 66666666666666666666666553 23466666666665520 11 23444444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005704 417 ELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY 464 (682)
Q Consensus 417 eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~ 464 (682)
.+..+...+......+......+..+..++...+..+.+.+.+|.+..
T Consensus 522 ~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~ 569 (1293)
T KOG0996|consen 522 KVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLR 569 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHH
Confidence 555555555555555555555566666666666666666666655443
No 36
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.11 E-value=0.0044 Score=64.06 Aligned_cols=151 Identities=18% Similarity=0.306 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 201 EILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQ 280 (682)
Q Consensus 201 ~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~e 280 (682)
..++.+......++..++.+++++....+.+...+.+. ..-+.++..+|+++..|+..++.++..|..+
T Consensus 81 k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~-----------~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~e 149 (237)
T PF00261_consen 81 KVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEV-----------ERKLKVLEQELERAEERAEAAESKIKELEEE 149 (237)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHhhhchhHHHHHHH
Confidence 33444444445555555555555554444333322222 2346788999999999999999999999999
Q ss_pred HHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005704 281 LQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQ 360 (682)
Q Consensus 281 L~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~ 360 (682)
|..+..... .++............++..+..|...|...-.. .......+..+...+..|+..+.
T Consensus 150 l~~~~~~lk-----------~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~R----ae~aE~~v~~Le~~id~le~eL~ 214 (237)
T PF00261_consen 150 LKSVGNNLK-----------SLEASEEKASEREDEYEEKIRDLEEKLKEAENR----AEFAERRVKKLEKEIDRLEDELE 214 (237)
T ss_dssp HHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----------HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 988876653 222222222222334444444444444332211 12222333444444555555555
Q ss_pred cCCChhhHHHHHHHH-HHHH
Q 005704 361 ARPTSKMVDDLRKKV-KILQ 379 (682)
Q Consensus 361 ~~~~~sDyeelK~EL-~~Lk 379 (682)
.. ...|..++.+| .+|.
T Consensus 215 ~~--k~~~~~~~~eld~~l~ 232 (237)
T PF00261_consen 215 KE--KEKYKKVQEELDQTLN 232 (237)
T ss_dssp HH--HHHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHHHHH
Confidence 43 34588888888 4554
No 37
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.10 E-value=0.04 Score=65.26 Aligned_cols=201 Identities=18% Similarity=0.260 Sum_probs=118.7
Q ss_pred HhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHH
Q 005704 237 EVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISEL 316 (682)
Q Consensus 237 ~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L 316 (682)
..+....+++.....+++-+..+.++....+.+|+.....|+.+.+.+..... ..-.+...++.+|.+|
T Consensus 244 ~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t-----------~~~k~kt~lel~~kdl 312 (1200)
T KOG0964|consen 244 EDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARET-----------KISKKKTKLELKIKDL 312 (1200)
T ss_pred HHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHhhhhhhhhHHH
Confidence 34444445555556667777777777777778888888888887665543321 1111233445567777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhccccCccchhhhhhcc
Q 005704 317 NSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATN 396 (682)
Q Consensus 317 ~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~iEf~~~d~~~~~~a~~ 396 (682)
..++..-... |...-+....+...+.+...++..++-+-+.+ ..+-+.++..|..|++-- -+ =-+-.
T Consensus 313 q~~i~~n~q~----r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l--~~ee~~~~~rl~~l~~~~------~~-l~~Kq 379 (1200)
T KOG0964|consen 313 QDQITGNEQQ----RNLALHVLQKVKDKIEEKKDELSKIEPKYNSL--VDEEKRLKKRLAKLEQKQ------RD-LLAKQ 379 (1200)
T ss_pred HHHhhhhhhh----hhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH--HhHHHHHHHHHHHHHHHH------HH-HHHhh
Confidence 7776654433 33333344555555555555555555544444 222333444444444310 00 00000
Q ss_pred hhhhchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005704 397 DEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKG 463 (682)
Q Consensus 397 ~~~~~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~ 463 (682)
|. ..-. +.--+|.+=+.+++-.+..-+++.....+.++.++..++.++.+.-..+.+|+..+...
T Consensus 380 gr-~sqF-ssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~ 444 (1200)
T KOG0964|consen 380 GR-YSQF-SSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINET 444 (1200)
T ss_pred cc-cccc-CcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Confidence 00 0000 01245677788999999999999999999999999999999999999999988887633
No 38
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.05 E-value=0.031 Score=66.36 Aligned_cols=264 Identities=15% Similarity=0.231 Sum_probs=126.0
Q ss_pred hhhhhhHHhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 005704 130 LKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQA 209 (682)
Q Consensus 130 ~~~~~le~E~~kL~~el~~l~~el~~lknq~~~~~~Lkerl~~lE~~~e~~~~~~~~~~E~el~~~~eek~~~~~ere~~ 209 (682)
..+...+.+++.-+.++++++.++..+.++....+.|++.+. -.... +.-.+..+... +. ....+....
T Consensus 677 ~~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~-------l~~~~-l~l~~~r~~~~--e~-~~~~~~~~~ 745 (1174)
T KOG0933|consen 677 QKLKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLE-------LKLHE-LALLEKRLEQN--EF-HKLLDDLKE 745 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH-HHHHHHHHhcC--hH-hhHHHHHHH
Confidence 333456677777788888888888888887777666665332 11111 11111111110 00 112333445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 005704 210 LQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAG 289 (682)
Q Consensus 210 L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~ 289 (682)
+.+.+++.+.+|++....+...+..+..+.....+..+.+ ..|+.+|+++...+..++++.....
T Consensus 746 ~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~r--------------e~rlkdl~keik~~k~~~e~~~~~~- 810 (1174)
T KOG0933|consen 746 LLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANR--------------ERRLKDLEKEIKTAKQRAEESSKEL- 810 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh--------------HhHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 5566666666666666666655544433322211111111 2344555555555555554432222
Q ss_pred cCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHH
Q 005704 290 SRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVD 369 (682)
Q Consensus 290 ~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDye 369 (682)
...+.++..|.-|...++.. ...+..+...+..+++.+...+..+...+.+. ..|.+
T Consensus 811 -----------------ek~~~e~e~l~lE~e~l~~e----~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~--~~~~~ 867 (1174)
T KOG0933|consen 811 -----------------EKRENEYERLQLEHEELEKE----ISSLKQQLEQLEKQISSLKSELGNLEAKVDKV--EKDVK 867 (1174)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HhHHH
Confidence 11122233333333322222 23333444555555566666666666666665 56677
Q ss_pred HHHHHHHHHHhccccCccchhhhhhcchhhhchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 370 DLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQ 449 (682)
Q Consensus 370 elK~EL~~Lk~iEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~ 449 (682)
..-.+|...+.. +. +.|. -+. .++..-.++..+..........+..++..++.+-.....+++.+
T Consensus 868 ~~~~el~~~k~k-~~--~~dt-----------~i~-~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l 932 (1174)
T KOG0933|consen 868 KAQAELKDQKAK-QR--DIDT-----------EIS-GLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKL 932 (1174)
T ss_pred HHHHHHHHHHHH-HH--hhhH-----------HHh-hhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHH
Confidence 777777766653 11 1110 000 12233334444444444555555555555555555555555554
Q ss_pred HHHHHHHH
Q 005704 450 QKLIQKLE 457 (682)
Q Consensus 450 ~~l~~kLE 457 (682)
.+.+.-+.
T Consensus 933 ~~k~~wi~ 940 (1174)
T KOG0933|consen 933 LKKHEWIG 940 (1174)
T ss_pred HHhccchh
Confidence 44444444
No 39
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.96 E-value=0.15 Score=65.22 Aligned_cols=16 Identities=6% Similarity=0.094 Sum_probs=9.4
Q ss_pred hhHHHHHhhhhhcChh
Q 005704 586 IESKYKKMYEDDINPF 601 (682)
Q Consensus 586 ~e~~Y~~~YE~~L~Pf 601 (682)
|...|..++++.++|-
T Consensus 694 v~~~~~~~~~A~lg~~ 709 (1486)
T PRK04863 694 VSLEDAPYFSALYGPA 709 (1486)
T ss_pred cCcchHHHHHHHHHhh
Confidence 5556666666665553
No 40
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.93 E-value=0.074 Score=64.60 Aligned_cols=117 Identities=14% Similarity=0.153 Sum_probs=65.5
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC---CC--CCCCCC
Q 005704 402 KMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKD---RK--GNVFDD 476 (682)
Q Consensus 402 ~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~---~~--~~~~~~ 476 (682)
.++.-+--+-+-+++++...+..+..+ +|..-..+.....+.+.+.+....++++++..+..... .. ++.-..
T Consensus 667 ~~e~~~e~~lk~~q~~~eq~~~E~~~~--~L~~~e~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~~~~~~ 744 (1317)
T KOG0612|consen 667 ALEIKLERKLKMLQNELEQENAEHHRL--RLQDKEAQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDYKQSQEKL 744 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhhhhhccch
Confidence 345555555566777777777777666 55555666667777777777677777776666553311 00 000000
Q ss_pred CccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 477 WDLSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGV 536 (682)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~ 536 (682)
|..- .......+..--+++|.+++-..-.-+..+|+.+.+.+..
T Consensus 745 ~~l~----------------r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLssq~~~~~t 788 (1317)
T KOG0612|consen 745 NELR----------------RSKDQLITEVLKLQSMLEQEISKRLSLQRELKSQEQEVNT 788 (1317)
T ss_pred hhhh----------------hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHhhcc
Confidence 0000 0012444555667777777777777777777755555544
No 41
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.87 E-value=0.1 Score=60.28 Aligned_cols=59 Identities=12% Similarity=0.220 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHhhhcccc
Q 005704 506 LKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNNE 564 (682)
Q Consensus 506 L~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRylqsy~~~ 564 (682)
...........+..+......+.....++.....++...+..=-.-...|+-|+.+...
T Consensus 388 a~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l~e~~~~ 446 (522)
T PF05701_consen 388 AEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKALSESESS 446 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 33444455555555555666666666666666666666665544446688888776544
No 42
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.82 E-value=0.16 Score=60.70 Aligned_cols=112 Identities=23% Similarity=0.279 Sum_probs=59.4
Q ss_pred hhHHHhhHhHHHHHHHHhhHhhHHHHHHHHHHhHHhhcCCcH--HHHHhhHHHHHHhHHHHHHHhhhhhhhHHHHHHHhh
Q 005704 33 LEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPE--EKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQ 110 (682)
Q Consensus 33 l~~lq~~LD~~~~ei~~~q~~s~~sRK~La~~Tk~Fkk~~~e--ekl~~~~~LLK~yQ~EID~LTkRsK~aE~aFl~~Y~ 110 (682)
|..+.+++-.--.++.+.=+.-+.-|-.|=..-++|.|+--+ +-+... .=.+.|-.|+|.|--+
T Consensus 179 lAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea-~ra~~yrdeldalre~------------- 244 (1195)
T KOG4643|consen 179 LADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEA-HRADRYRDELDALREQ------------- 244 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHh-------------
Confidence 334444444334445555566677788888888888884322 222221 2245677777766544
Q ss_pred hhccCCCCH--HHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHhhhhH
Q 005704 111 KLYEAPDPY--PALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQ 160 (682)
Q Consensus 111 ~L~eaPDP~--PlLe~s~~~~~~~~~le~E~~kL~~el~~l~~el~~lknq~ 160 (682)
.++|||. |-|--+.=...++.++...|+-|-++-.=|+.++.+++.|-
T Consensus 245 --aer~d~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrars 294 (1195)
T KOG4643|consen 245 --AERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARS 294 (1195)
T ss_pred --hhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcc
Confidence 4688873 32222211233444555555555555555555555555443
No 43
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.07 Score=58.51 Aligned_cols=191 Identities=19% Similarity=0.207 Sum_probs=126.0
Q ss_pred HHHHHHHhhhhhhhHHHHHHHhhhhccCCCCHHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 005704 88 QEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLE 167 (682)
Q Consensus 88 Q~EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~~~le~E~~kL~~el~~l~~el~~lknq~~~~~~Lk 167 (682)
-..+|.+.+-++. |..|.... ..--+|+|.|.+.-= +..-+.|+..++++++....-.+..+...+.|..|+
T Consensus 190 ~~~ld~wg~~~~t-~~df~f~~-t~dPa~p~~p~~~~p------asse~ee~eel~eq~eeneel~ae~kqh~v~~~ale 261 (521)
T KOG1937|consen 190 RKWLDQWGNSSHT-EKDFNFKL-TDDPALPPKPIFAKP------ASSEEEEVEELTEQNEENEELQAEYKQHLVEYKALE 261 (521)
T ss_pred hhHHHHHhccCCc-ccccccee-cCCCCCCCccccCCC------ccccchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4577888777777 66655443 344577788875431 111233567777777777655666666678888888
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH
Q 005704 168 ERNRQLEQQMEEKVKEIVEIKQRGL--AEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEE 245 (682)
Q Consensus 168 erl~~lE~~~e~~~~~~~~~~E~el--~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee 245 (682)
++-.+++....+. +..+..+++-+ -..-+....++......++.++.++..+..+-+-.+...-..|.+...-.+.+
T Consensus 262 s~~sq~~e~~sel-E~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e 340 (521)
T KOG1937|consen 262 SKRSQFEEQNSEL-EKLLKLKERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETE 340 (521)
T ss_pred hhhHHHHHHHHHH-HHHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccch
Confidence 8776664433222 12222233322 23445566677888888888888888888888877776666665544332322
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005704 246 RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEA 288 (682)
Q Consensus 246 ~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~ 288 (682)
.. ....|..+..||+.+..++..=+..++.|+.+|+..-.+.
T Consensus 341 ~~-e~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv 382 (521)
T KOG1937|consen 341 DE-EIRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDV 382 (521)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchh
Confidence 22 2688999999999999999988889999999998766554
No 44
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.77 E-value=0.13 Score=58.55 Aligned_cols=58 Identities=19% Similarity=0.207 Sum_probs=44.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005704 407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY 464 (682)
Q Consensus 407 Ll~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~ 464 (682)
|.+.+.+...+.+.+.........++..|+.++..+..-+++-+....+|+.+|..-.
T Consensus 348 lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~ 405 (546)
T PF07888_consen 348 LKEGRSQWAQEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEK 405 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555566777777777666666678888888888888889998999999999986543
No 45
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.72 E-value=0.12 Score=60.36 Aligned_cols=33 Identities=15% Similarity=0.126 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005704 433 ETAEGKIAELTAKINEQQKLIQKLEDDILKGYS 465 (682)
Q Consensus 433 ~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~ 465 (682)
+....++..+...++.+..-|..|...|..+..
T Consensus 282 E~~~~ELq~~qe~Lea~~qqNqqL~~qls~~~~ 314 (617)
T PF15070_consen 282 EMAHQELQEAQEHLEALSQQNQQLQAQLSLMAL 314 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcC
Confidence 445566666677777777788888888876553
No 46
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.71 E-value=0.22 Score=59.43 Aligned_cols=257 Identities=19% Similarity=0.240 Sum_probs=133.9
Q ss_pred HHhhhhcCChhHHHhhHhHHHHHHHHhhHhhHHHHHHHHHHhHHhhc---CCcHHH------HHhhHHHHHH----hHHH
Q 005704 24 ISNFWKDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKK---ASPEEK------LSLFNSLLKG----YQEE 90 (682)
Q Consensus 24 a~~~W~~~dl~~lq~~LD~~~~ei~~~q~~s~~sRK~La~~Tk~Fkk---~~~eek------l~~~~~LLK~----yQ~E 90 (682)
++-.|..+-++. ++|+.+-+.|.+.+.++-+-| .+|+-|-+--+ ++.+++ +.-+.+|+|- |-.=
T Consensus 50 ~llLg~avqcp~--kelfi~riq~ldlete~a~~~-~iaevtd~~~~vleld~~er~~~~q~~~hir~llk~r~~~~k~~ 126 (1195)
T KOG4643|consen 50 QLLLGSAVQCPT--KELFIQRIQILDLETEMAQMR-TIAEVTDEECQVLELDNEERAQKIQILEHIRLLLKDRKKKWKSV 126 (1195)
T ss_pred HHHHHhhhcCCc--HHHHHHHHHhhhhHHHHHHHH-HHHHhhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 355788888774 789999999999999998888 77777654332 333333 3344556553 4445
Q ss_pred HHHHhhhhhhh-HH--HHHHHhhhhccCCCC-----HHHHHH---HHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHhhhh
Q 005704 91 VDNLTKRAKFG-EN--AFLNIYQKLYEAPDP-----YPALAS---IAEQDLKLSELESENRKMKIELEEYRTEATHLKNQ 159 (682)
Q Consensus 91 ID~LTkRsK~a-E~--aFl~~Y~~L~eaPDP-----~PlLe~---s~~~~~~~~~le~E~~kL~~el~~l~~el~~lknq 159 (682)
||.+--.+-.. |. --.++-+.+.+.||- .|..-. .......+.+++.-+..|+.++.+ ++.-+..-
T Consensus 127 id~~qe~se~i~e~~le~vGl~~~~~~s~s~~~~~~sp~~~~~~~~~hL~velAdle~kir~LrqElEE---K~enll~l 203 (1195)
T KOG4643|consen 127 IDDLQEASEKIAEKLLELVGLEKKYRESRSGKELYKSPYDIVVKKNLHLEVELADLEKKIRTLRQELEE---KFENLLRL 203 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHhcccceeeccccCCCCCCCcchhhcchhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 55543322211 11 123444555555543 222111 011111222344444444444332 22111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHhhhHHHHHHH---HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 005704 160 QSTIRRLEERNRQLEQQMEEKVKEIV--EIKQRGLAEENQKT---LEILQEREQA---LQDQLRQAKDSVATMQKLHELA 231 (682)
Q Consensus 160 ~~~~~~Lkerl~~lE~~~e~~~~~~~--~~~E~el~~~~eek---~~~~~ere~~---L~~ql~~ae~~l~eL~~~le~~ 231 (682)
..+++-|+.++..+.++..+-+..+= ..--.++.+..+.. -..+.++..+ +.+++++++..+.+|....+-.
T Consensus 204 r~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ykerlmDs~fykdRveelkedN~vLleekeML 283 (1195)
T KOG4643|consen 204 RNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEML 283 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 23555566666666666555544311 11111222211111 1123444443 4678999999999999998888
Q ss_pred HHHHHHhhhcchHH-----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005704 232 QSQLFEVRAQSDEE-----RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAND 286 (682)
Q Consensus 232 Q~eL~~l~~k~~ee-----~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s 286 (682)
..+|..++++.+.. .-.....+.-+..+...-+.+.++|.-||-.|.-+-+....
T Consensus 284 eeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~ 343 (1195)
T KOG4643|consen 284 EEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDG 343 (1195)
T ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 88898888876431 11112333444444444566677777777766655544443
No 47
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.70 E-value=0.029 Score=65.05 Aligned_cols=177 Identities=12% Similarity=0.182 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 253 VNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNERE 332 (682)
Q Consensus 253 le~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~ 332 (682)
++.+..+++.....+..++.+.+.|+.+|....+... ..+..+...+..+..++.++..++..+.-.+.
T Consensus 215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~-----------~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~ 283 (562)
T PHA02562 215 IARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIE-----------DPSAALNKLNTAAAKIKSKIEQFQKVIKMYEK 283 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455555555555566666666666666655553321 22222333444444444444444444332211
Q ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CChhhHHHHHHHHHHHHhccccCccchhhhhhcchhh
Q 005704 333 ------------QHMNEIKKLNALLIEKEAALEDMKKELQAR-PTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEE 399 (682)
Q Consensus 333 ------------~~~~~~~~L~~ql~~~~~~~~~le~~l~~~-~~~sDyeelK~EL~~Lk~iEf~~~d~~~~~~a~~~~~ 399 (682)
.....+..|.+++..++..+..++..+..+ ....+|+++..++.-++..- ...
T Consensus 284 ~~~Cp~C~~~~~~~~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i--------------~~~ 349 (562)
T PHA02562 284 GGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKI--------------STN 349 (562)
T ss_pred CCCCCCCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHH
Confidence 001222333333333333333333332211 00123555555555554320 001
Q ss_pred hchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 400 MSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQK 455 (682)
Q Consensus 400 ~~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~k 455 (682)
...+++ +..+++.++.++..|.....++..++..+..++..+..++.+.......
T Consensus 350 ~~~i~~-~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~ 404 (562)
T PHA02562 350 KQSLIT-LVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYH 404 (562)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123444 6666777777777777777777667666666666666666555554443
No 48
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.69 E-value=0.039 Score=66.44 Aligned_cols=143 Identities=17% Similarity=0.292 Sum_probs=80.2
Q ss_pred HHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHH
Q 005704 177 MEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLL 256 (682)
Q Consensus 177 ~e~~~~~~~~~~E~el~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l 256 (682)
..+..=..|..+++.+... .+.....+++...++++++....++.+++..+...+.++..+.. +..+...|++.+
T Consensus 268 k~k~~W~~V~~~~~ql~~~-~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~----e~~~~d~Ei~~~ 342 (1074)
T KOG0250|consen 268 KAKMAWAWVNEVERQLNNQ-EEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKD----EVDAQDEEIEEA 342 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH----hhhhhhHHHHHH
Confidence 3344445666777777664 44556678888888888888888888888777777777766543 223334444444
Q ss_pred HHHHHHH--------------HHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHH
Q 005704 257 MDEVERA--------------QTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHN 322 (682)
Q Consensus 257 ~~DLEra--------------~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~ 322 (682)
..++... ...+..+..++..|+.+++....... ..+..++...+.++..|..++..
T Consensus 343 r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~----------~~~~~~~~e~e~k~~~L~~evek 412 (1074)
T KOG0250|consen 343 RKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTN----------NELGSELEERENKLEQLKKEVEK 412 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hhhhhhHHHHHHHHHHHHHHHHH
Confidence 4444443 23334444444455555544443331 12333344444455666666665
Q ss_pred HHHHHHHHHHHH
Q 005704 323 IETALSNEREQH 334 (682)
Q Consensus 323 Le~~L~~~r~~~ 334 (682)
++..+..++...
T Consensus 413 ~e~~~~~L~~e~ 424 (1074)
T KOG0250|consen 413 LEEQINSLREEL 424 (1074)
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
No 49
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.69 E-value=2.4e-05 Score=93.29 Aligned_cols=201 Identities=18% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005704 252 EVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNER 331 (682)
Q Consensus 252 Ele~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r 331 (682)
+.+....+|...+....+.+..+..|..+|....+..... ..+ .+... .|..|+.+|.++.+.+..+|
T Consensus 210 e~e~~~~~L~~~q~~~~e~e~~i~~Le~el~~~~~~~~i~--------k~l-~~ql~---~i~~LE~en~~l~~Elk~Lr 277 (722)
T PF05557_consen 210 EAEQQLQELQASQASLAEAEQKIKELEAELKDQESDAEIN--------KEL-KEQLA---HIRELEKENRRLREELKHLR 277 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHhhHHHHH--------HHH-HHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3333444455555555556666666666665544433111 111 11222 37788888888888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHHHhccccCcc-chh-hhhhcchhhhchHHHHHH
Q 005704 332 EQHMNEIKKLNALLIEKEAALEDMKKELQARPT-SKMVDDLRKKVKILQAVGYNSIE-AED-WEVATNDEEMSKMESLLL 408 (682)
Q Consensus 332 ~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~-~sDyeelK~EL~~Lk~iEf~~~d-~~~-~~~a~~~~~~~~LE~lLl 408 (682)
..+.+ +.-|+++...+...+..++.....+.. .-++..|..++..-.++.-..+. -+. +..+..-..-..=...|+
T Consensus 278 ~~~~n-~elLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ 356 (722)
T PF05557_consen 278 QSQEN-VELLEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLT 356 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 76654 334455555544444444433222210 11233334443333322111000 000 000000000011145688
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005704 409 DKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS 465 (682)
Q Consensus 409 ~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~ 465 (682)
+++..++.++..++..+.++..++..+...+..+...+......+.+||..+.-+..
T Consensus 357 ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~k 413 (722)
T PF05557_consen 357 EKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATK 413 (722)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999887766553
No 50
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.69 E-value=0.2 Score=58.27 Aligned_cols=84 Identities=12% Similarity=0.180 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---hHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 203 LQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQS---DEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRS 279 (682)
Q Consensus 203 ~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~---~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~ 279 (682)
++.+...++-++..++..+..++..+..+..+|..+.++. .++..++..+|-|+..||-.-+..+.+++.+..++-+
T Consensus 111 LQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~ 190 (1265)
T KOG0976|consen 111 LQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLA 190 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHH
Confidence 3333333333344444444444444444444444444433 3345677888989988888877777666666555555
Q ss_pred HHHhhhh
Q 005704 280 QLQSAND 286 (682)
Q Consensus 280 eL~~a~s 286 (682)
+.+..+.
T Consensus 191 e~~~en~ 197 (1265)
T KOG0976|consen 191 EANREKK 197 (1265)
T ss_pred HHHHHHH
Confidence 5444443
No 51
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.66 E-value=0.046 Score=56.53 Aligned_cols=57 Identities=14% Similarity=0.270 Sum_probs=33.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005704 407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKG 463 (682)
Q Consensus 407 Ll~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~ 463 (682)
+-.+-+.|...|..........+..+..|+..+..+..++...+..+..+..+|...
T Consensus 174 ~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~ 230 (237)
T PF00261_consen 174 YEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQT 230 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555556666666666666666666666666666666666433
No 52
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.65 E-value=0.13 Score=58.55 Aligned_cols=45 Identities=27% Similarity=0.369 Sum_probs=25.3
Q ss_pred hHHhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHH
Q 005704 135 LESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVK 182 (682)
Q Consensus 135 le~E~~kL~~el~~l~~el~~lknq~~~~~~Lkerl~~lE~~~e~~~~ 182 (682)
++.|+..++..+++-.++.+++ ..+|++|++.+.+|..+.++...
T Consensus 90 ye~El~~ar~~l~e~~~~ra~~---e~ei~kl~~e~~elr~~~~~~~k 134 (546)
T KOG0977|consen 90 YEAELATARKLLDETARERAKL---EIEITKLREELKELRKKLEKAEK 134 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHH
Confidence 4445555555555555555543 34666666666666666654443
No 53
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.65 E-value=0.23 Score=57.95 Aligned_cols=30 Identities=13% Similarity=0.163 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchHHH
Q 005704 217 AKDSVATMQKLHELAQSQLFEVRAQSDEER 246 (682)
Q Consensus 217 ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~ 246 (682)
-...+..|+..+...+..|.+.+..++...
T Consensus 138 nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~ 167 (569)
T PRK04778 138 NREEVEQLKDLYRELRKSLLANRFSFGPAL 167 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccchH
Confidence 344555555555555556655555555443
No 54
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.64 E-value=1.1e-05 Score=97.38 Aligned_cols=296 Identities=19% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHH----------HhhHHHHHHHHHHHHHH--
Q 005704 196 NQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEER----------VAKQSEVNLLMDEVERA-- 263 (682)
Q Consensus 196 ~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~----------~a~~aEle~l~~DLEra-- 263 (682)
.+...+.++....+++.++.+.++.+.+|.......+.++.++....++.. .....+|+.+...|+..
T Consensus 178 ~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr 257 (859)
T PF01576_consen 178 AEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETR 257 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhh
Confidence 344444455555555555666666666666666655555555555544331 11123344444444332
Q ss_pred -----HHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 264 -----QTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEI 338 (682)
Q Consensus 264 -----~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~ 338 (682)
...+..++.+++.|++++..-..+..... ...+.+..++... ...++.+.......+...+..+...+
T Consensus 258 ~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~----~qlsk~~~El~~~---k~K~e~e~~~~~EelEeaKKkL~~~L 330 (859)
T PF01576_consen 258 AKQALEKQLRQLEHELEQLREQLEEEEEAKSELE----RQLSKLNAELEQW---KKKYEEEAEQRTEELEEAKKKLERKL 330 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHH----HHHHHHhhHHHHH---HHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 33445556666666666543222111000 0011222222222 33444555544555677788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhccccCccchhhhhhcchhhhchHHHHHHHHhhhhhHHH
Q 005704 339 KKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHEL 418 (682)
Q Consensus 339 ~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~iEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eL 418 (682)
..+..++......+..|++.+..+ ..+++++..+|+-.+.. .. . |-.|-+++...+
T Consensus 331 ~el~e~le~~~~~~~~LeK~k~rL--~~EleDl~~eLe~~~~~----~~--------------~----LeKKqr~fDk~l 386 (859)
T PF01576_consen 331 QELQEQLEEANAKVSSLEKTKKRL--QGELEDLTSELEKAQAA----AA--------------E----LEKKQRKFDKQL 386 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH----HH--------------H----HHHHHHhHHHHH
Confidence 999999999999999999998888 57888888777766632 10 0 122333333333
Q ss_pred HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccc
Q 005704 419 TQLKVKLSEKTSLLE--------------TAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGG 484 (682)
Q Consensus 419 t~LR~~~~~l~~~l~--------------~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~ 484 (682)
+..+.....+...++ .+...+..+...+..++..+..|..+|..+.+..+ +++
T Consensus 387 ~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~-------~~~------ 453 (859)
T PF01576_consen 387 AEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLD-------DAG------ 453 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhh-------hhc------
Confidence 333333333333333 33333333333333333334444333333321110 000
Q ss_pred cccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005704 485 TELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKAD 547 (682)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~D 547 (682)
..........--+..+++.++..+.|++..+......+.-+..++..++++
T Consensus 454 ------------k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e 504 (859)
T PF01576_consen 454 ------------KSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQE 504 (859)
T ss_dssp ---------------------------------------------------------------
T ss_pred ------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001134444555666777777788888888877777777777777777774
No 55
>PRK11281 hypothetical protein; Provisional
Probab=97.55 E-value=0.15 Score=63.25 Aligned_cols=53 Identities=17% Similarity=0.138 Sum_probs=37.6
Q ss_pred chHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 401 SKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLI 453 (682)
Q Consensus 401 ~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~ 453 (682)
.++=+-+++.|++|..+|...-...+.+.++.......+..+.+.....++-+
T Consensus 277 ~p~i~~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi 329 (1113)
T PRK11281 277 NPLVAQELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQI 329 (1113)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34545577889999888888888877777777777777777766655544444
No 56
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.53 E-value=0.24 Score=60.01 Aligned_cols=15 Identities=20% Similarity=0.264 Sum_probs=11.1
Q ss_pred hHHHHHhhhhhcChh
Q 005704 587 ESKYKKMYEDDINPF 601 (682)
Q Consensus 587 e~~Y~~~YE~~L~Pf 601 (682)
+++|..++|..|+-.
T Consensus 507 ~~KWa~aIE~~L~n~ 521 (1074)
T KOG0250|consen 507 EPKWALAIERCLGNL 521 (1074)
T ss_pred CcHHHHHHHHHHHHh
Confidence 459999999866543
No 57
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=97.52 E-value=0.17 Score=53.09 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=39.0
Q ss_pred chHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005704 242 SDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEA 288 (682)
Q Consensus 242 ~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~ 288 (682)
|.......-+|-.||...||...+--.-||.+++..|..|+.|-.+.
T Consensus 61 y~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~ 107 (305)
T PF14915_consen 61 YNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDH 107 (305)
T ss_pred HhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 34444445578889999999999999999999999999999987665
No 58
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.45 E-value=0.5 Score=56.71 Aligned_cols=99 Identities=21% Similarity=0.234 Sum_probs=70.4
Q ss_pred hcCChhHHHhhHhHHHHHHHHhhHhhHHHHHHHHHHhHHhhcCC-----cHHHHHhhHHHHHHhHHHHHHHhhhhhhhHH
Q 005704 29 KDFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKAS-----PEEKLSLFNSLLKGYQEEVDNLTKRAKFGEN 103 (682)
Q Consensus 29 ~~~dl~~lq~~LD~~~~ei~~~q~~s~~sRK~La~~Tk~Fkk~~-----~eekl~~~~~LLK~yQ~EID~LTkRsK~aE~ 103 (682)
...+|..++..|+..-..+...-..-...|+.|+.+-++..+.. +.+.......+++.|+..+.+||.--..-+.
T Consensus 313 ~~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~ 392 (1174)
T KOG0933|consen 313 EETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTAGLSSNED 392 (1174)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcc
Confidence 33456666777777777777777777788889998888888843 3456677889999999999999987666666
Q ss_pred HHHHHhhhhccCCCCHHHHHHHHH
Q 005704 104 AFLNIYQKLYEAPDPYPALASIAE 127 (682)
Q Consensus 104 aFl~~Y~~L~eaPDP~PlLe~s~~ 127 (682)
+=-.+-..|.+|.+...-+.....
T Consensus 393 ~e~~l~~ql~~aK~~~~~~~t~~k 416 (1174)
T KOG0933|consen 393 EEKTLEDQLRDAKITLSEASTEIK 416 (1174)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Confidence 555555666666665554444333
No 59
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.44 E-value=0.072 Score=63.14 Aligned_cols=105 Identities=25% Similarity=0.334 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhh--------------HHHHHHHHHHHHHHHH
Q 005704 260 VERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAK--------------EKIISELNSELHNIET 325 (682)
Q Consensus 260 LEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~k--------------e~ei~~L~~e~~~Le~ 325 (682)
-|.-++|..+||.|...||.+|........ .+|.++..+ =..++-|.+.+.+|+.
T Consensus 540 ~e~~r~r~~~lE~E~~~lr~elk~kee~~~-----------~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~ 608 (697)
T PF09726_consen 540 AESCRQRRRQLESELKKLRRELKQKEEQIR-----------ELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLEN 608 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344577888888888888888876554432 222222111 0112344555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhc
Q 005704 326 ALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAV 381 (682)
Q Consensus 326 ~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~i 381 (682)
+|..+-+-. -+|=..|.+.++++.-++..+.+. ..++.+||..|.-|-+|
T Consensus 609 sLsaEtriK----ldLfsaLg~akrq~ei~~~~~~~~--d~ei~~lk~ki~~~~av 658 (697)
T PF09726_consen 609 SLSAETRIK----LDLFSALGDAKRQLEIAQGQLRKK--DKEIEELKAKIAQLLAV 658 (697)
T ss_pred hhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhc
Confidence 555443322 223334455555666666666665 46799999988887776
No 60
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.41 E-value=0.25 Score=57.23 Aligned_cols=108 Identities=9% Similarity=0.178 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005704 208 QALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDE 287 (682)
Q Consensus 208 ~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~ 287 (682)
..+++++..+..+...++..++..+.+|.++.. +++.+...|..++..+..++..++.+...+......
T Consensus 216 ~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~-----------~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~ 284 (562)
T PHA02562 216 ARKQNKYDELVEEAKTIKAEIEELTDELLNLVM-----------DIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKG 284 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344445555555555555555555555555542 223333344455555555666666666655554321
Q ss_pred hccCC-CCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 005704 288 AGSRN-SDTLDSNSYLENSLSAKEKIISELNSELHNIETALSN 329 (682)
Q Consensus 288 ~~~~~-~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~ 329 (682)
..=+. ...++. . ...+......+..|+++...+...+..
T Consensus 285 ~~Cp~C~~~~~~--~-~~~~~~l~d~i~~l~~~l~~l~~~i~~ 324 (562)
T PHA02562 285 GVCPTCTQQISE--G-PDRITKIKDKLKELQHSLEKLDTAIDE 324 (562)
T ss_pred CCCCCCCCcCCC--c-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11000 001111 1 333444444566666666655555443
No 61
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.29 E-value=0.82 Score=55.83 Aligned_cols=56 Identities=27% Similarity=0.259 Sum_probs=40.2
Q ss_pred HhhHhHHHHHHHHhhHhhHHHHHHHHHHhHHhhcC--CcHHHHHhhHHHHHHhHHHHH
Q 005704 37 KSLLDELGLKIAENQENSQKNRRKLAESTRDFKKA--SPEEKLSLFNSLLKGYQEEVD 92 (682)
Q Consensus 37 q~~LD~~~~ei~~~q~~s~~sRK~La~~Tk~Fkk~--~~eekl~~~~~LLK~yQ~EID 92 (682)
|..+-..-..|+..|......+..|-+....|.-. +--+|...++.-+|.++.+++
T Consensus 326 q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~k 383 (1293)
T KOG0996|consen 326 QYILYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELK 383 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44455567788888999888898888888888733 334667777777776666554
No 62
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.26 E-value=0.3 Score=58.08 Aligned_cols=59 Identities=20% Similarity=0.257 Sum_probs=29.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005704 407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS 465 (682)
Q Consensus 407 Ll~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~ 465 (682)
|.+||..|++.|..-..-..+|=..|-....++.-+...+-..+..|..|-..|..+-.
T Consensus 599 mqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a 657 (697)
T PF09726_consen 599 MQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLA 657 (697)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555556555554444444444455555555555555555555555555554444443
No 63
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.25 E-value=0.64 Score=55.04 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=52.6
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005704 409 DKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS 465 (682)
Q Consensus 409 ~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~ 465 (682)
.=-.||..+|.........|...++..+.++......+.++...|..|-..|..+..
T Consensus 265 ~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~ 321 (717)
T PF09730_consen 265 SEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRK 321 (717)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344789999999999999999999999999999999999999999999999988875
No 64
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.24 E-value=0.96 Score=55.48 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=24.3
Q ss_pred HHHHhHHhhcCCcHHHHHhhH---HHHHHhHHHHHHHhhhhhhh
Q 005704 61 LAESTRDFKKASPEEKLSLFN---SLLKGYQEEVDNLTKRAKFG 101 (682)
Q Consensus 61 La~~Tk~Fkk~~~eekl~~~~---~LLK~yQ~EID~LTkRsK~a 101 (682)
|...+++-+++. ++...++ .+.|-++..|-.|+.+-...
T Consensus 443 l~~~~~~~~~~~--~~~~~~~~~~~~~keL~e~i~~lk~~~~el 484 (1317)
T KOG0612|consen 443 LVNEMQEKEKLD--EKCQAVAELEEMDKELEETIEKLKSEESEL 484 (1317)
T ss_pred hhhHHHHhhhHH--HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555433 3444444 67888998888887765544
No 65
>PRK01156 chromosome segregation protein; Provisional
Probab=97.20 E-value=1.1 Score=55.32 Aligned_cols=39 Identities=21% Similarity=0.258 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005704 506 LKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKT 544 (682)
Q Consensus 506 L~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~L 544 (682)
+.-+..+++.++..+.+++.++.....++..++.+++.+
T Consensus 683 ~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~ 721 (895)
T PRK01156 683 LKKSRKALDDAKANRARLESTIEILRTRINELSDRINDI 721 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444555555555555555555555444444444433
No 66
>PRK11637 AmiB activator; Provisional
Probab=97.14 E-value=0.54 Score=52.94 Aligned_cols=34 Identities=12% Similarity=0.230 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 252 EVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAN 285 (682)
Q Consensus 252 Ele~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~ 285 (682)
+|..+..+++..+.++..++.+++.++..|....
T Consensus 97 ~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rl 130 (428)
T PRK11637 97 TLNQLNKQIDELNASIAKLEQQQAAQERLLAAQL 130 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555555555554433
No 67
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.12 E-value=0.0035 Score=75.06 Aligned_cols=105 Identities=19% Similarity=0.245 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccCCCCCCCcchhHHHH
Q 005704 429 TSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQSSMLKV 508 (682)
Q Consensus 429 ~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~siL~I 508 (682)
..++..++.++..++.++..++..+..||..|...+-.+. ++ +..+.+..- .+++.....-|
T Consensus 502 ~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~-----~~------~~~trVL~l-------r~NP~~~~~~~ 563 (722)
T PF05557_consen 502 SEELNELQKEIEELERENERLRQELEELESELEKLTLQGE-----FN------PSKTRVLHL-------RDNPTSKAEQI 563 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT-------B------TTTEEEEEE-------SS-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-----cC------CCCceeeee-------CCCcHHHHHHH
Confidence 4567778888888888888888889999988886431000 00 000111110 11244555667
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHhhhhhHhh
Q 005704 509 ICNQRDRFRARLRETEEEVRQ-------------------LKEKIGVLTAELEKTKADNVQL 551 (682)
Q Consensus 509 vt~QRDRfr~r~~ELE~el~~-------------------~~~~i~~lr~Ei~~Lk~DN~kL 551 (682)
-.+..+.++..|..|...++. ....+..|+.++.++..-|..|
T Consensus 564 k~~~l~~L~~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RL 625 (722)
T PF05557_consen 564 KKSTLEALQAENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRL 625 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTT----------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 788888999999888888832 2345678888888888744433
No 68
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.07 E-value=0.62 Score=50.54 Aligned_cols=35 Identities=29% Similarity=0.371 Sum_probs=31.2
Q ss_pred HHHHHhHHHHHHHhhhhhhhHHHHHHHhhhhccCC
Q 005704 82 SLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAP 116 (682)
Q Consensus 82 ~LLK~yQ~EID~LTkRsK~aE~aFl~~Y~~L~eaP 116 (682)
|+|-.||-=+--|.++=..+-..|=++=.....-|
T Consensus 68 P~Lely~~~c~EL~~~I~egr~~~~~~E~~~~~~n 102 (325)
T PF08317_consen 68 PMLELYQFSCRELKKYISEGRQIFEEIEEETYESN 102 (325)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 89999999999999999999999988888887666
No 69
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.06 E-value=1 Score=52.72 Aligned_cols=225 Identities=17% Similarity=0.173 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 202 ILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQL 281 (682)
Q Consensus 202 ~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL 281 (682)
.+....-.+++++.+.+.+|..|+.+.-..+.++..++. ..++.++.+-....+||..+.|+..++.++-.=+.++
T Consensus 89 iyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~----ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eI 164 (1265)
T KOG0976|consen 89 IYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQD----TIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDI 164 (1265)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHH
Confidence 344444555666666666666666666555444433321 2223334444444555666666666666555555554
Q ss_pred HhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 282 QSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHM--NEIKKLNALLIEKEAALEDMKKEL 359 (682)
Q Consensus 282 ~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~--~~~~~L~~ql~~~~~~~~~le~~l 359 (682)
-....+..... ....+++.++..+ ..+-..++..++..+...+.... +++..+-.+.....+.+-+-...|
T Consensus 165 f~~~~~L~nk~----~~lt~~~~q~~tk---l~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QL 237 (1265)
T KOG0976|consen 165 FMIGEDLHDKN----EELNEFNMEFQTK---LAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQL 237 (1265)
T ss_pred HHHHHHHhhhh----hHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433332211 1111333333333 22233333333333333333211 122222222222222222222222
Q ss_pred hcCCChhh-HHHHHHHHHHHHhccccCccchhhhhhcchhhhchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 360 QARPTSKM-VDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGK 438 (682)
Q Consensus 360 ~~~~~~sD-yeelK~EL~~Lk~iEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~ 438 (682)
..+ .+ ..-++.-...++.. + ++- .+ .+....--+..|..+|-.|..|+.+..-....++..++.++..
T Consensus 238 ss~---~q~ltp~rk~~s~i~E~----d--~~l-q~-sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt 306 (1265)
T KOG0976|consen 238 SSQ---KQTLTPLRKTCSMIEEQ----D--MDL-QA-SAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQT 306 (1265)
T ss_pred HHh---HhhhhhHhhhhHHHHHH----H--HHH-HH-HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 222 12 23334444444321 0 000 00 0001111144577788888888888877777777777777766
Q ss_pred HHHHHHHHHH
Q 005704 439 IAELTAKINE 448 (682)
Q Consensus 439 ~~~l~~el~~ 448 (682)
.+..-...++
T Consensus 307 ~t~a~gdseq 316 (1265)
T KOG0976|consen 307 RTRADGDSEQ 316 (1265)
T ss_pred HHHhhccHHH
Confidence 6665555443
No 70
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=1.1 Score=52.52 Aligned_cols=67 Identities=27% Similarity=0.316 Sum_probs=40.3
Q ss_pred hhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh-hHHHHH
Q 005704 300 SYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSK-MVDDLR 372 (682)
Q Consensus 300 s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~s-DyeelK 372 (682)
+.|++.+..++..+..++..+..++ .+.++.-+++.-++.|+.+++..+......++.+ +. +|+-+|
T Consensus 531 s~L~aa~~~ke~irq~ikdqldels----kE~esk~~eidi~n~qlkelk~~~~~q~lake~~--yk~e~d~~k 598 (1118)
T KOG1029|consen 531 SELEAARRKKELIRQAIKDQLDELS----KETESKLNEIDIFNNQLKELKEDVNSQQLAKEEL--YKNERDKLK 598 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 4566666666666666666655443 3344455567777777777777666665555554 33 566655
No 71
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.04 E-value=1.4 Score=53.69 Aligned_cols=117 Identities=13% Similarity=0.120 Sum_probs=67.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCcccccccccccccccc
Q 005704 414 MEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADK 493 (682)
Q Consensus 414 L~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (682)
..+.-..+..+.++....|+..+......+.-++.....+..-.++|..+++...
T Consensus 1554 a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~------------------------- 1608 (1758)
T KOG0994|consen 1554 ARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETA------------------------- 1608 (1758)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-------------------------
Confidence 3444455555556666666666666666666677777777777777777776432
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHhhhcc
Q 005704 494 KHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYN 562 (682)
Q Consensus 494 ~~~~~~~~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRylqsy~ 562 (682)
.....+.-.+.|...|..++.+|..+..+...........+.+.+..-+.-=++.+-||+|.
T Consensus 1609 -------~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~ 1670 (1758)
T KOG0994|consen 1609 -------AAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYY 1670 (1758)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23334455567777777788887777766555544444444444333222223444555554
No 72
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.03 E-value=1 Score=52.00 Aligned_cols=121 Identities=15% Similarity=0.191 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHH-------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 162 TIRRLEERNRQLEQQMEEKVKE-------IVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQ 234 (682)
Q Consensus 162 ~~~~Lkerl~~lE~~~e~~~~~-------~~~~~E~el~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~e 234 (682)
+|+.|..|+...|...++.++. .+... ..+++.+...-.-|+-.++.|-++|.+-+..+.-+.-.-.....+
T Consensus 613 Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQI-E~lQ~tl~~~~tawereE~~l~~rL~dSQtllr~~v~~eqgekqE 691 (961)
T KOG4673|consen 613 EIEDLQRRLQAAERRCEELIQQVPETTRPLLRQI-EALQETLSKAATAWEREERSLNERLSDSQTLLRINVLEEQGEKQE 691 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccHHHHHH-HHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhHHH
Confidence 5555666655555555555543 12222 134556666667787778888888876655554433222222234
Q ss_pred HHHhhhcchHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005704 235 LFEVRAQSDEE---RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQS 283 (682)
Q Consensus 235 L~~l~~k~~ee---~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~ 283 (682)
|..+++..... .+-..+|-.-+..-+|.++.|+.+...++-.+.+++..
T Consensus 692 lL~~~~~l~s~~~q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~ 743 (961)
T KOG4673|consen 692 LLSLNFSLPSSPIQLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADT 743 (961)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 56666654433 22235677778888888888888888888777777653
No 73
>PF13514 AAA_27: AAA domain
Probab=97.01 E-value=1.8 Score=54.63 Aligned_cols=51 Identities=14% Similarity=0.051 Sum_probs=33.7
Q ss_pred HhhHHHHHHhHHHHHHHhhhhhhhHHHHHHHhhhhccCCCCHHHHHHHHHHHhhh
Q 005704 78 SLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKL 132 (682)
Q Consensus 78 ~~~~~LLK~yQ~EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~ 132 (682)
......+..-+..+..+.........++-.+...+. .|+| | ....++..+.
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~g-~p~~-p--~~~~~Wl~~~ 610 (1111)
T PF13514_consen 560 EEARARLARAQARLAAAEAALAALEAAWAALWAAAG-LPLS-P--AEMRDWLARR 610 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCC-h--HHHHHHHHHH
Confidence 334444555666777777777777888888888888 7765 3 4555555443
No 74
>PRK11637 AmiB activator; Provisional
Probab=97.00 E-value=0.81 Score=51.50 Aligned_cols=14 Identities=21% Similarity=0.123 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHH
Q 005704 643 YTILLHVLVFTCLY 656 (682)
Q Consensus 643 Y~~~LH~lv~~~ly 656 (682)
|+|+-|+--|+++|
T Consensus 362 ~vii~hg~g~~t~Y 375 (428)
T PRK11637 362 VVVVEHGKGDMSLY 375 (428)
T ss_pred EEEEEeCCCcEEEc
Confidence 34566776677777
No 75
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.92 E-value=1.3 Score=51.52 Aligned_cols=11 Identities=27% Similarity=0.510 Sum_probs=8.0
Q ss_pred cCCCCHHHHHH
Q 005704 114 EAPDPYPALAS 124 (682)
Q Consensus 114 eaPDP~PlLe~ 124 (682)
..|.|.|.+..
T Consensus 36 ~s~g~sP~~~q 46 (716)
T KOG4593|consen 36 SSPGSSPNLYQ 46 (716)
T ss_pred cCCCCCccccC
Confidence 47888887744
No 76
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.89 E-value=0.00024 Score=84.75 Aligned_cols=64 Identities=14% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh
Q 005704 312 IISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQA 380 (682)
Q Consensus 312 ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~ 380 (682)
.+.+|+.||..|........ ...+..|...+.........|+...... ...+.++..+++-|+.
T Consensus 460 rl~rLe~ENk~Lk~~~e~~~---~e~~~~L~~~Leda~~~~~~Le~~~~~~--~~~~~~lq~qle~lq~ 523 (713)
T PF05622_consen 460 RLLRLEHENKRLKEKQEESE---EEKLEELQSQLEDANRRKEKLEEENREA--NEKILELQSQLEELQK 523 (713)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhccch---hhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 46778888888865533221 2234556666777666666666665544 2345566666665553
No 77
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=96.87 E-value=2.2 Score=53.35 Aligned_cols=22 Identities=9% Similarity=0.152 Sum_probs=12.6
Q ss_pred hcchhhHHHHHHHHHHHHHHHH
Q 005704 631 LGNKYARTFAFFYTILLHVLVF 652 (682)
Q Consensus 631 l~nr~~R~~f~~Y~~~LH~lv~ 652 (682)
..+-..|.+|++-|++|-++++
T Consensus 627 ~~~~lgr~~~i~~~~~l~~~~~ 648 (1109)
T PRK10929 627 FSGTLGRLCFILLCGALSLVTL 648 (1109)
T ss_pred hhccHHHHHHHHHHHHHHHHHH
Confidence 3445566677776666554443
No 78
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.87 E-value=0.7 Score=47.70 Aligned_cols=131 Identities=22% Similarity=0.311 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005704 208 QALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDE 287 (682)
Q Consensus 208 ~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~ 287 (682)
.++..++...+..+.+++...+..+..+.. .....|+.-|..++.-|+.|...|+.++..|..++.
T Consensus 55 e~le~qv~~~e~ei~~~r~r~~~~e~kl~~---------v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~----- 120 (239)
T COG1579 55 EDLENQVSQLESEIQEIRERIKRAEEKLSA---------VKDERELRALNIEIQIAKERINSLEDELAELMEEIE----- 120 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 344555555566666666666555544411 223456677777777777777777777776665543
Q ss_pred hccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh
Q 005704 288 AGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKM 367 (682)
Q Consensus 288 ~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sD 367 (682)
.++.++..+.....+++..+...+......+..+.++..........|..++..- -.+.
T Consensus 121 --------------------~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~~e-ll~~ 179 (239)
T COG1579 121 --------------------KLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLDPE-LLSE 179 (239)
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-HHHH
Confidence 2355577788888888888888888888888888888877777777777766531 1345
Q ss_pred HHHHHH
Q 005704 368 VDDLRK 373 (682)
Q Consensus 368 yeelK~ 373 (682)
|+-|.+
T Consensus 180 yeri~~ 185 (239)
T COG1579 180 YERIRK 185 (239)
T ss_pred HHHHHh
Confidence 666543
No 79
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.87 E-value=0.34 Score=48.59 Aligned_cols=91 Identities=16% Similarity=0.214 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 195 ENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREK 274 (682)
Q Consensus 195 ~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~ 274 (682)
.+.+.++.|.++.+..+.+...+++.+++....+-.++.++..+..-.. ....+|.+.+...|+.++.++.+.++++
T Consensus 65 ~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~---dknL~eReeL~~kL~~~~~~l~~~~~ki 141 (194)
T PF15619_consen 65 RHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSE---DKNLAEREELQRKLSQLEQKLQEKEKKI 141 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777777777777777777777766666666655554432111 1124667778888888888888888888
Q ss_pred HHHHHHHHhhhhhh
Q 005704 275 DLLRSQLQSANDEA 288 (682)
Q Consensus 275 E~Lr~eL~~a~s~~ 288 (682)
..|.-++.-..+..
T Consensus 142 ~~Lek~leL~~k~~ 155 (194)
T PF15619_consen 142 QELEKQLELENKSF 155 (194)
T ss_pred HHHHHHHHHHhhHH
Confidence 88888776655544
No 80
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.85 E-value=1.9 Score=52.47 Aligned_cols=61 Identities=18% Similarity=0.182 Sum_probs=42.6
Q ss_pred cCChhHHHhhHhHHHHHHHHhhHhhHHHHHHHHHHhHHhhcCCcHHHHHhhHHHHHHhHHH
Q 005704 30 DFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEE 90 (682)
Q Consensus 30 ~~dl~~lq~~LD~~~~ei~~~q~~s~~sRK~La~~Tk~Fkk~~~eekl~~~~~LLK~yQ~E 90 (682)
+.+|+..+..++..+.++...|+++..=-+-+.+.--.|-|+...+.+..++.+=++|+.-
T Consensus 1252 E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik~sdi~GA~~~~r~a~~~s 1312 (1758)
T KOG0994|consen 1252 EETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIKESDILGAFNSTRHAYEQS 1312 (1758)
T ss_pred hhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHH
Confidence 4567777777778888888888776654444445555555666667888888888888753
No 81
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=96.81 E-value=0.62 Score=46.14 Aligned_cols=123 Identities=16% Similarity=0.329 Sum_probs=70.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 136 ESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLR 215 (682)
Q Consensus 136 e~E~~kL~~el~~l~~el~~lknq~~~~~~Lkerl~~lE~~~e~~~~~~~~~~E~el~~~~eek~~~~~ere~~L~~ql~ 215 (682)
+.++..|++.+.-++.++..+.-.+.+ +.+++.++++...+. ++. ...+..+-..+.+.++
T Consensus 3 e~~va~lnrri~~leeele~aqErl~~---a~~KL~Eaeq~~dE~--------er~--------~Kv~enr~~kdEE~~e 63 (205)
T KOG1003|consen 3 EADVAALNRRIQLLEEELDRAQERLAT---ALQKLEEAEQAADES--------ERG--------MKVIENRAQKLEEKME 63 (205)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhcccHH--------HHH--------HHHHHHHHHhhHHHHH
Confidence 346667777777666666665444433 444555554433111 111 1122333344444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005704 216 QAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEA 288 (682)
Q Consensus 216 ~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~ 288 (682)
.++.++++.+.--+ +...+|++ +.--|-|+..|||++..|+...+....+|-+++.-..++.
T Consensus 64 ~~e~qLkEAk~iaE-------~adrK~eE----VarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nl 125 (205)
T KOG1003|consen 64 AQEAQLKEAKHIAE-------KADRKYEE----VARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNL 125 (205)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Confidence 55555555443333 22223321 2344689999999999999999999999999988776654
No 82
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.77 E-value=0.00033 Score=83.55 Aligned_cols=44 Identities=30% Similarity=0.314 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 503 SSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 503 ~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
.+-++.+..+.+....++..|+.+.+...+++..++.+++.++.
T Consensus 480 ~e~~~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~lq~ 523 (713)
T PF05622_consen 480 EEKLEELQSQLEDANRRKEKLEEENREANEKILELQSQLEELQK 523 (713)
T ss_dssp --------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556678888888888888888888888888888888776664
No 83
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=1.8 Score=50.94 Aligned_cols=38 Identities=24% Similarity=0.172 Sum_probs=30.8
Q ss_pred HHHhhHHHHHHhHHHHHHHhhhhhhhHHHHHHHhhhhc
Q 005704 76 KLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLY 113 (682)
Q Consensus 76 kl~~~~~LLK~yQ~EID~LTkRsK~aE~aFl~~Y~~L~ 113 (682)
+......|+--||.+|+.++.+++.-..-|...|+.+.
T Consensus 312 ~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (698)
T KOG0978|consen 312 KSRDLESLLDKIQDLISQEAELSKKLRSKLLESAKKLK 349 (698)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677888999999999999988888888777766
No 84
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.70 E-value=0.75 Score=49.01 Aligned_cols=87 Identities=29% Similarity=0.396 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHH-----------HHHHHHHHHHHHHHHHH
Q 005704 201 EILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSE-----------VNLLMDEVERAQTRLLS 269 (682)
Q Consensus 201 ~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aE-----------le~l~~DLEra~~R~~~ 269 (682)
..+.++...|..+|..+...+..|+-.+... .+|...-+..+++....... -.--...++..+.|+..
T Consensus 93 ~~L~~~~~~le~~L~~~~e~v~qLrHeL~~k-deLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~ 171 (306)
T PF04849_consen 93 QDLSERNEALEEQLGAALEQVEQLRHELSMK-DELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKS 171 (306)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHH
Confidence 3445556666777777777777777766633 34544444333331111000 01112345667889999
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q 005704 270 LQREKDLLRSQLQSANDEA 288 (682)
Q Consensus 270 LE~e~E~Lr~eL~~a~s~~ 288 (682)
||.+|..||.+.......+
T Consensus 172 LEeEN~~LR~Ea~~L~~et 190 (306)
T PF04849_consen 172 LEEENEQLRSEASQLKTET 190 (306)
T ss_pred HHHHHHHHHHHHHHhhHHH
Confidence 9999999999988776655
No 85
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=96.67 E-value=1.1 Score=47.23 Aligned_cols=27 Identities=26% Similarity=0.349 Sum_probs=22.1
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 005704 405 SLLLDKNRKMEHELTQLKVKLSEKTSL 431 (682)
Q Consensus 405 ~lLl~kNrkL~~eLt~LR~~~~~l~~~ 431 (682)
.+|-+||+.|-++...|+..+..++.+
T Consensus 274 lllEErNKeL~ne~n~LkEr~~qyEkE 300 (305)
T PF14915_consen 274 LLLEERNKELINECNHLKERLYQYEKE 300 (305)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999887766654
No 86
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.61 E-value=2.2 Score=49.83 Aligned_cols=56 Identities=5% Similarity=0.100 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHH
Q 005704 204 QEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDE 259 (682)
Q Consensus 204 ~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~D 259 (682)
......|-..=+.-+..+..|+..+......|.+.+..++.........+.-+..+
T Consensus 121 ~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~ 176 (560)
T PF06160_consen 121 LDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEE 176 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHH
Confidence 33333333333444556666666666666666666666665544443333333333
No 87
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.55 E-value=2.3 Score=49.29 Aligned_cols=54 Identities=24% Similarity=0.250 Sum_probs=28.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHH
Q 005704 501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRF 557 (682)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRy 557 (682)
....-+.-+.+||+ ..+.-|.-++..+...-+.|-.|+-+|-..|-+|-||+.-
T Consensus 852 tt~eh~eall~Qre---GElthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek~~~ 905 (961)
T KOG4673|consen 852 TTSEHYEALLRQRE---GELTHLQTELASLESIRSSLAEELVKLTAECEKLREKADR 905 (961)
T ss_pred chHHHHHHHHHhhc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445667777765 3344444444444444455555555555555555555544
No 88
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.54 E-value=2.7 Score=50.00 Aligned_cols=36 Identities=25% Similarity=0.345 Sum_probs=18.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 413 KMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINE 448 (682)
Q Consensus 413 kL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~ 448 (682)
.++.++..++..+..+..++..+..++..++.++..
T Consensus 432 ~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 467 (650)
T TIGR03185 432 EAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDE 467 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555554443
No 89
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=96.54 E-value=3.6 Score=51.44 Aligned_cols=81 Identities=16% Similarity=0.181 Sum_probs=42.0
Q ss_pred HHHHHHhHHHHHHHhhhhhhhHHHHHHHhhhhccCCCCHHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHhhhhH
Q 005704 81 NSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQ 160 (682)
Q Consensus 81 ~~LLK~yQ~EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~~~le~E~~kL~~el~~l~~el~~lknq~ 160 (682)
..+++.-+..|++.-...+.++...=..|+..-..|--.|....-. ..++.+++.++.++.....++.++..+.
T Consensus 690 ~ef~~~l~~~i~s~p~~~~~~~~~l~k~~k~~e~l~~~~~~~~~~~------~l~~~~i~e~~~~l~~~~~el~~~~~~~ 763 (1294)
T KOG0962|consen 690 VEFIKKLESKIDSAPDKLEEAEVELSKEEKIFEILLKLKPTFGSII------KLIDKEIPELEKELQEVYEELGDLSEEE 763 (1294)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHH------HHHhhhhhHHHHHHHHHHHHHHhhhhhh
Confidence 4455555556655555555555555554444222232233322111 1244466666777777777777777666
Q ss_pred HHHHHHH
Q 005704 161 STIRRLE 167 (682)
Q Consensus 161 ~~~~~Lk 167 (682)
.+...+-
T Consensus 764 e~~~~~l 770 (1294)
T KOG0962|consen 764 EDDEKLL 770 (1294)
T ss_pred hHHHHHh
Confidence 6544443
No 90
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.52 E-value=4.4 Score=52.34 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 508 VICNQRDRFRARLRETEEEVRQLKE 532 (682)
Q Consensus 508 Ivt~QRDRfr~r~~ELE~el~~~~~ 532 (682)
-.+-+|+....++..|+.++..+..
T Consensus 642 ~~~~~~~~~~~~~~~L~~~i~~l~~ 666 (1486)
T PRK04863 642 ELTVERDELAARKQALDEEIERLSQ 666 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3455666666666666666665554
No 91
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.45 E-value=2 Score=51.08 Aligned_cols=135 Identities=19% Similarity=0.248 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcC
Q 005704 221 VATMQKLHELAQSQLFEVRAQSDEERV---AKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLD 297 (682)
Q Consensus 221 l~eL~~~le~~Q~eL~~l~~k~~ee~~---a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~ 297 (682)
++++....-..+.+...++.+|.+-.. ....-..-+..-+|.+++-+.+++++|..|...|++..+....-... -+
T Consensus 412 ~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K-~e 490 (980)
T KOG0980|consen 412 VEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETK-TE 490 (980)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hH
Confidence 344444444444444444444432221 12223344555667777777789999999999998887765421000 00
Q ss_pred chhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 298 SNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKEL 359 (682)
Q Consensus 298 ~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l 359 (682)
+....+.+.+.+..-|..++..++..+......++.+...+...+.++-...+.+....
T Consensus 491 ---~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~ 549 (980)
T KOG0980|consen 491 ---SQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVARE 549 (980)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 11111334444455555666666666666677777777777777777666666655554
No 92
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=96.35 E-value=3.6 Score=49.42 Aligned_cols=94 Identities=22% Similarity=0.317 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 257 MDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMN 336 (682)
Q Consensus 257 ~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~ 336 (682)
..|+.....|+..+|++|-.|+-++-. ..++.+|+-.+-++.+-- .+....+|-.
T Consensus 133 e~~~~~l~~~l~~~eken~~Lkye~~~-----------------------~~keleir~~E~~~~~~~--ae~a~kqhle 187 (769)
T PF05911_consen 133 EAEIEDLMARLESTEKENSSLKYELHV-----------------------LSKELEIRNEEREYSRRA--AEAASKQHLE 187 (769)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHhHHH--HHHHHHHHHH
Confidence 344455566888899999998888642 233334444444433221 2233444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCChhhHHHHHHHHHHHH
Q 005704 337 EIKKLNALLIEKEAALEDMKKELQA-RPTSKMVDDLRKKVKILQ 379 (682)
Q Consensus 337 ~~~~L~~ql~~~~~~~~~le~~l~~-~~~~sDyeelK~EL~~Lk 379 (682)
-+.++ ..+..+...|.....+ +|.++-...+|.|++.|.
T Consensus 188 ~vkki----akLEaEC~rLr~l~rk~lpgpaa~a~mk~ev~~~~ 227 (769)
T PF05911_consen 188 SVKKI----AKLEAECQRLRALVRKKLPGPAALAQMKNEVESLG 227 (769)
T ss_pred HHHHH----HHHHHHHHHHHHHHhccCCChHHHHHhHHHHHHhc
Confidence 33333 2333444555555553 488899999999999994
No 93
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.34 E-value=1.6 Score=47.44 Aligned_cols=46 Identities=24% Similarity=0.229 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC--CChhhHHHHHHHHHHHHhc
Q 005704 336 NEIKKLNALLIEKEAALEDMKKELQAR--PTSKMVDDLRKKVKILQAV 381 (682)
Q Consensus 336 ~~~~~L~~ql~~~~~~~~~le~~l~~~--~~~sDyeelK~EL~~Lk~i 381 (682)
..+..+..+...+...+.++++.+... .+..|+..||.+++.|+.+
T Consensus 244 ~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~ 291 (325)
T PF08317_consen 244 EKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKL 291 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 345666666667777777777776654 3567899999999999985
No 94
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.32 E-value=3.3 Score=48.55 Aligned_cols=84 Identities=20% Similarity=0.334 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccCCCCCCCcchhHHH
Q 005704 428 KTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQSSMLK 507 (682)
Q Consensus 428 l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~siL~ 507 (682)
.-.++..+..++..+..++..-..++.+|..+++++....
T Consensus 445 ~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~---------------------------------------- 484 (594)
T PF05667_consen 445 KLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDV---------------------------------------- 484 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----------------------------------------
Confidence 3345555556666666677777777778887777664321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHH
Q 005704 508 VICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKI 555 (682)
Q Consensus 508 Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEki 555 (682)
.|--|-.||.|.=..+++++..|...-.+...|+.+-..|=+++
T Consensus 485 ----~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL 528 (594)
T PF05667_consen 485 ----NRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKL 528 (594)
T ss_pred ----CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 15556666777777777777777777777777777433333343
No 95
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=96.26 E-value=0.62 Score=56.26 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 250 QSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAN 285 (682)
Q Consensus 250 ~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~ 285 (682)
..+|..+...|..++.+...++.+...++..+....
T Consensus 236 ~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~ 271 (754)
T TIGR01005 236 TQQLAELNTELSRARANRAAAEGTADSVKKALQNGG 271 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 478889999999999999999999999999997643
No 96
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.23 E-value=1.5 Score=43.96 Aligned_cols=179 Identities=18% Similarity=0.312 Sum_probs=108.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 005704 249 KQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALS 328 (682)
Q Consensus 249 ~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~ 328 (682)
+.-.|..|..++.-++.++.++..||..|+.--..-......- . .-++++ ...|....+|+..|...+.
T Consensus 10 r~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~----e----~~e~~L---pqll~~h~eEvr~Lr~~LR 78 (194)
T PF15619_consen 10 RLHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKY----E----DTEAEL---PQLLQRHNEEVRVLRERLR 78 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H----hhhhhH---HHHHHHHHHHHHHHHHHHH
Confidence 3445566667777777777888888887775432211111100 0 111122 2225555555555555544
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhccccCccchhhhhhcchhhhchHHH
Q 005704 329 NEREQH---MNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMES 405 (682)
Q Consensus 329 ~~r~~~---~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~iEf~~~d~~~~~~a~~~~~~~~LE~ 405 (682)
...... ...+.+...++......+..|++..... +-.+-+++.++|+.+... .++ .......|+.
T Consensus 79 ~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dk-nL~eReeL~~kL~~~~~~----l~~-------~~~ki~~Lek 146 (194)
T PF15619_consen 79 KSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDK-NLAEREELQRKLSQLEQK----LQE-------KEKKIQELEK 146 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CchhHHHHHHHHHHHHHH----HHH-------HHHHHHHHHH
Confidence 443332 2233444444555555555566655532 235789999999999863 211 1123567888
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 406 LLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQ 450 (682)
Q Consensus 406 lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~ 450 (682)
-|---|+....++...+..+.++...+..++.++..+.+.+.+-.
T Consensus 147 ~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKe 191 (194)
T PF15619_consen 147 QLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKE 191 (194)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888888899999999999999998888888888888877643
No 97
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=96.21 E-value=2.2 Score=45.51 Aligned_cols=109 Identities=14% Similarity=0.179 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccCCCC-CcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 264 QTRLLSLQREKDLLRSQLQSANDEAGSRNSD-TLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLN 342 (682)
Q Consensus 264 ~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~-~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~ 342 (682)
..++..|+.+...|...|....++..++... ......+. .......|..|..++.+|...+......+...+....
T Consensus 184 ~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt---~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~ 260 (310)
T PF09755_consen 184 WKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDT---AERLSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQYL 260 (310)
T ss_pred HHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677889999999999999876653322100 00001111 1122444899999999999998887777777776666
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 005704 343 ALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKI 377 (682)
Q Consensus 343 ~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~ 377 (682)
.....+......|+..|+.- ..-.+.+.+.|..
T Consensus 261 ~eek~ireEN~rLqr~L~~E--~erreal~R~lse 293 (310)
T PF09755_consen 261 QEEKEIREENRRLQRKLQRE--VERREALCRHLSE 293 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 66666666777777777653 2335555555543
No 98
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.16 E-value=4 Score=48.05 Aligned_cols=90 Identities=16% Similarity=0.250 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccCCCCCCCcchh
Q 005704 425 LSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQSS 504 (682)
Q Consensus 425 ~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 504 (682)
+..+....+.|+..+..+-.+..+++..+++||-....+...... ...
T Consensus 409 h~aLq~amekLq~~f~~~~~e~adl~e~~e~le~~~~ql~~et~t--------------------------------i~e 456 (617)
T PF15070_consen 409 HQALQEAMEKLQSRFMDLMEEKADLKERVEKLEHRFIQLSGETDT--------------------------------IGE 456 (617)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCccc--------------------------------hhh
Confidence 455667788888889999999999999999999888777654321 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 505 MLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 505 iL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
-+.+..+||-=.+.|-.+-++.+.++-+....++..+..|+.
T Consensus 457 yi~ly~~qr~~~k~r~~e~~~~i~~l~~~~e~mk~kl~elq~ 498 (617)
T PF15070_consen 457 YITLYQSQRAVLKQRHQEKEEYISRLAQDREEMKVKLLELQE 498 (617)
T ss_pred hhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233455666666666666666665555555555555544444
No 99
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.16 E-value=3.4 Score=47.24 Aligned_cols=35 Identities=26% Similarity=0.479 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005704 249 KQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQS 283 (682)
Q Consensus 249 ~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~ 283 (682)
..-.|+++..+++.-...+..+..++..|+-+++.
T Consensus 292 ~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~ 326 (581)
T KOG0995|consen 292 MEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIEL 326 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556777777766666666677777777777654
No 100
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.11 E-value=5.6 Score=49.23 Aligned_cols=54 Identities=22% Similarity=0.333 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhhHhhHHHHHHhh
Q 005704 506 LKVICNQRDRFRARLRETEEEVRQ---LKEKIGVLTAELEKTKADNVQLYGKIRFVQ 559 (682)
Q Consensus 506 L~Ivt~QRDRfr~r~~ELE~el~~---~~~~i~~lr~Ei~~Lk~DN~kLyEkiRylq 559 (682)
+.-+..+.+.++.+..++...+.. ....+.....++..++..--+++..+..+.
T Consensus 690 ~~~~~~el~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (908)
T COG0419 690 LEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLEKALELLE 746 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554 444444555555555555555553444433
No 101
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.08 E-value=1.3 Score=44.73 Aligned_cols=145 Identities=20% Similarity=0.277 Sum_probs=88.0
Q ss_pred HHHHHHhHHHHHHHhhhhhhhHHHHHHHhhhhccCCCCHHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHhhhhH
Q 005704 81 NSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQ 160 (682)
Q Consensus 81 ~~LLK~yQ~EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~~~le~E~~kL~~el~~l~~el~~lknq~ 160 (682)
-.|||+.-.+|..+-++....+..+..+-.--...-.|- ..++.++..|+..+..|.+....+++-.
T Consensus 26 L~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL-------------~~a~~e~~eL~k~L~~y~kdK~~L~~~k 92 (201)
T PF13851_consen 26 LELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPL-------------KKAEEEVEELRKQLKNYEKDKQSLQNLK 92 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888999888888877777665544332222221 1244467777777777777776666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 161 STIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQD----QLRQAKDSVATMQKLHELAQSQLF 236 (682)
Q Consensus 161 ~~~~~Lkerl~~lE~~~e~~~~~~~~~~E~el~~~~eek~~~~~ere~~L~~----ql~~ae~~l~eL~~~le~~Q~eL~ 236 (682)
..+..++.+++.++...+...+ +....+.+...- .+.+.....+.+. +---+++++..|...++..+.+|.
T Consensus 93 ~rl~~~ek~l~~Lk~e~evL~q-r~~kle~ErdeL----~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~ 167 (201)
T PF13851_consen 93 ARLKELEKELKDLKWEHEVLEQ-RFEKLEQERDEL----YRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLN 167 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666555543332 233233332222 2233333333333 344489999999999999999998
Q ss_pred Hhhhcch
Q 005704 237 EVRAQSD 243 (682)
Q Consensus 237 ~l~~k~~ 243 (682)
+.-...+
T Consensus 168 evl~~~n 174 (201)
T PF13851_consen 168 EVLAAAN 174 (201)
T ss_pred HHHHHcC
Confidence 7755433
No 102
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=96.08 E-value=2.5 Score=46.94 Aligned_cols=28 Identities=11% Similarity=0.203 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005704 260 VERAQTRLLSLQREKDLLRSQLQSANDE 287 (682)
Q Consensus 260 LEra~~R~~~LE~e~E~Lr~eL~~a~s~ 287 (682)
++++=.+..+=-.|+.+||.+|+.+..+
T Consensus 451 mdk~LskKeeeverLQ~lkgelEkat~S 478 (527)
T PF15066_consen 451 MDKTLSKKEEEVERLQQLKGELEKATTS 478 (527)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444333333333466777777766543
No 103
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.94 E-value=4.1 Score=46.23 Aligned_cols=243 Identities=15% Similarity=0.190 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH---HHhhHHHHHHHHHHHHH-------HHHHHHHHHHH
Q 005704 204 QEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEE---RVAKQSEVNLLMDEVER-------AQTRLLSLQRE 273 (682)
Q Consensus 204 ~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee---~~a~~aEle~l~~DLEr-------a~~R~~~LE~e 273 (682)
..++..+-.++-+++..++.++.-+...|.+...+.....+. .++..++---+..+|-. .=+.-.+||.+
T Consensus 99 aakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEE 178 (772)
T KOG0999|consen 99 AAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEE 178 (772)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555556666666665555555554443322211 11122222223333322 22233677777
Q ss_pred HHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Q 005704 274 KDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKE---A 350 (682)
Q Consensus 274 ~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~---~ 350 (682)
|-.|..+.+....+. + +...+.-+|.+|++++.-|-..+++...-..=.-.+|++.+..++ .
T Consensus 179 NIsLQKqVs~LR~sQ---V------------EyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~ERe 243 (772)
T KOG0999|consen 179 NISLQKQVSNLRQSQ---V------------EYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQERE 243 (772)
T ss_pred cchHHHHHHHHhhhh---h------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 777777766554332 1 111223458888888888887776554332222233444443332 2
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHHHhcc--ccCccch---hhh---h------hcchhh----hchH-HHHHHHHh
Q 005704 351 ALEDMKKELQARPTSKMVDDLRKKVKILQAVG--YNSIEAE---DWE---V------ATNDEE----MSKM-ESLLLDKN 411 (682)
Q Consensus 351 ~~~~le~~l~~~~~~sDyeelK~EL~~Lk~iE--f~~~d~~---~~~---~------a~~~~~----~~~L-E~lLl~kN 411 (682)
+...|++++..--+..|+--+. .++=+++ |+.+.+. |.+ + ++...+ ...| --+.+..-
T Consensus 244 qk~alkkEL~q~~n~e~~~~~n---~l~~sldgk~~eDga~pn~d~e~eh~~l~kl~~Dl~tel~~p~sDl~sel~isei 320 (772)
T KOG0999|consen 244 QKNALKKELSQYRNAEDISSLN---HLLFSLDGKFGEDGAEPNNDPEEEHGALKKLASDLFTELQGPVSDLFSELNISEI 320 (772)
T ss_pred HHHHHHHHHHHhcchhhhhhhh---hhheecccccccccCCCCCChhhhcchhhhccchhhhhccCchhHHHHHHHHHHH
Confidence 3334555554432222222222 2222222 3322111 100 0 000000 1122 34566677
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005704 412 RKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY 464 (682)
Q Consensus 412 rkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~ 464 (682)
.+|+.+|-........+-.-+...+..+......+.++..-+..|-.++..+.
T Consensus 321 qkLkqqL~smErek~~l~anL~dtqt~le~T~~~l~~~~er~~~l~e~v~al~ 373 (772)
T KOG0999|consen 321 QKLKQQLMSMEREKAELLANLQDTQTQLEHTEGDLMEQRERVDRLTEHVQALR 373 (772)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888888888888888888888888888888888887777665
No 104
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.82 E-value=1.3 Score=41.56 Aligned_cols=68 Identities=22% Similarity=0.395 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005704 210 LQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSA 284 (682)
Q Consensus 210 L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a 284 (682)
+..++..++..+..|+...+.....| +....++..+-.++..++..+..|+.+|...|.-|..+|+..
T Consensus 64 lr~e~~~~~~~~~~l~~~~~~a~~~l-------~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 64 LREELQELQQEINELKAEAESAKAEL-------EESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444445555555555555444443 444556677788999999999999999999999999999753
No 105
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.79 E-value=0.39 Score=45.10 Aligned_cols=84 Identities=18% Similarity=0.268 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 204 QEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEE---RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQ 280 (682)
Q Consensus 204 ~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee---~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~e 280 (682)
......+...+..+...+..++..++.-.........+|+.+ .+....+|..+..++...+..+..+..+.+..+..
T Consensus 9 ~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~ 88 (132)
T PF07926_consen 9 QSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAE 88 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455555555555554444444556667666 23345667777777777777777777777777777
Q ss_pred HHhhhhh
Q 005704 281 LQSANDE 287 (682)
Q Consensus 281 L~~a~s~ 287 (682)
|......
T Consensus 89 l~~~e~s 95 (132)
T PF07926_consen 89 LEESEAS 95 (132)
T ss_pred HHHHHHh
Confidence 6654443
No 106
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.77 E-value=1.1 Score=42.76 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 260 VERAQTRLLSLQREKDLLRSQLQSAN 285 (682)
Q Consensus 260 LEra~~R~~~LE~e~E~Lr~eL~~a~ 285 (682)
.|..+.|+..||.+++.....|..+.
T Consensus 75 ~E~l~rriq~LEeele~ae~~L~e~~ 100 (143)
T PF12718_consen 75 AEQLNRRIQLLEEELEEAEKKLKETT 100 (143)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555544444433
No 107
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=95.54 E-value=2 Score=43.80 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 254 NLLMDEVERAQTRLLSLQREKDLLR 278 (682)
Q Consensus 254 e~l~~DLEra~~R~~~LE~e~E~Lr 278 (682)
.-....+++...|+..++.+.+...
T Consensus 161 ~~a~~~~er~e~ki~~~ea~a~a~~ 185 (221)
T PF04012_consen 161 SSAMDSFERMEEKIEEMEARAEASA 185 (221)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777777655444
No 108
>PRK10698 phage shock protein PspA; Provisional
Probab=95.53 E-value=3.3 Score=42.46 Aligned_cols=120 Identities=17% Similarity=0.201 Sum_probs=51.3
Q ss_pred hhhccCCCCHHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005704 110 QKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQ 189 (682)
Q Consensus 110 ~~L~eaPDP~PlLe~s~~~~~~~~~le~E~~kL~~el~~l~~el~~lknq~~~~~~Lkerl~~lE~~~e~~~~~~~~~~E 189 (682)
..|-.+-||.-.|...+. ++++.+.+++..+...-..-..+..+.. .+...+.+++.+. ...|..-.
T Consensus 17 ~~ldkaEDP~k~l~q~i~------em~~~l~~~r~alA~~~A~~k~~er~~~---~~~~~~~~~e~kA----~~Al~~G~ 83 (222)
T PRK10698 17 ALLEKAEDPQKLVRLMIQ------EMEDTLVEVRSTSARALAEKKQLTRRIE---QAEAQQVEWQEKA----ELALRKEK 83 (222)
T ss_pred HHHHhhcCHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH----HHHHHCCC
Confidence 445567799888776544 3444555555444443332222222222 2222233332222 22222222
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 005704 190 RGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQS 242 (682)
Q Consensus 190 ~el~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~ 242 (682)
..|-...-.++..+.+....|+.++......+..|+..+...+..|.+++.+.
T Consensus 84 EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~ 136 (222)
T PRK10698 84 EDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQ 136 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222211222334444455555555555555555555555555554444443
No 109
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.52 E-value=7.4 Score=46.20 Aligned_cols=60 Identities=18% Similarity=0.263 Sum_probs=41.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005704 404 ESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKG 463 (682)
Q Consensus 404 E~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~ 463 (682)
-.++..||-.++.+++....+..++.-.+....+.+..+...+..+..-++..|......
T Consensus 892 ka~~~~k~~nl~lki~s~kqeqee~~v~~~~~~~~i~alk~~l~dL~q~~eeie~e~~s~ 951 (970)
T KOG0946|consen 892 KALKTVKSENLSLKIVSNKQEQEELLVLLADQKEKIQALKEALEDLNQPVEEIEDEKVSI 951 (970)
T ss_pred HHHHHhhcccchhcccchhhhHHHHHHHHhhHHHHHHHHHHHHHHhCCChhhHHhhhhcc
Confidence 456677888888888888888888777777777777776666666655555555554433
No 110
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.52 E-value=3.4 Score=42.69 Aligned_cols=119 Identities=24% Similarity=0.323 Sum_probs=57.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005704 138 ENRKMKIELEEYRTEATHLKNQQS----TIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQ 213 (682)
Q Consensus 138 E~~kL~~el~~l~~el~~lknq~~----~~~~Lkerl~~lE~~~e~~~~~~~~~~E~el~~~~eek~~~~~ere~~L~~q 213 (682)
+...++..+..++.++.++++|.. +++.+.+|+...+.++. .++ .+++++ .+......|+.+...|.++
T Consensus 39 e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~-----~v~-~~~e~~-aL~~E~~~ak~r~~~le~e 111 (239)
T COG1579 39 ELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLS-----AVK-DERELR-ALNIEIQIAKERINSLEDE 111 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccc-cHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 444555555566666666666532 55556666655555541 111 122222 2444455566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHH
Q 005704 214 LRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERA 263 (682)
Q Consensus 214 l~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra 263 (682)
+..+...++.|....+..+.++..+.....+.......++..+..+....
T Consensus 112 l~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~ 161 (239)
T COG1579 112 LAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQEL 161 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555555555554444444444443333333333334444444444333
No 111
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=95.47 E-value=2.4 Score=46.47 Aligned_cols=21 Identities=33% Similarity=0.298 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhh
Q 005704 268 LSLQREKDLLRSQLQSANDEA 288 (682)
Q Consensus 268 ~~LE~e~E~Lr~eL~~a~s~~ 288 (682)
.-|..|++.||..|..+....
T Consensus 256 ~~l~~EveRlrt~l~~Aqk~~ 276 (552)
T KOG2129|consen 256 DKLQAEVERLRTYLSRAQKSY 276 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346667777777776665443
No 112
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.41 E-value=9.5 Score=46.70 Aligned_cols=28 Identities=18% Similarity=0.044 Sum_probs=24.4
Q ss_pred CCCCCCCChHHHHHhhhhcCChhHHHhh
Q 005704 12 KPNTSSSSPVSVISNFWKDFDLEKEKSL 39 (682)
Q Consensus 12 ~~~~~~~~~~~~a~~~W~~~dl~~lq~~ 39 (682)
.|++|+-|++-.|+.+--.++.+.|+..
T Consensus 32 GPNGSGKSNlMDAISFVLGekss~LR~~ 59 (1141)
T KOG0018|consen 32 GPNGSGKSNLMDAISFVLGEKSSHLRVS 59 (1141)
T ss_pred CCCCCchHHHHHHHHHHhcCCCcccccc
Confidence 4677889999999999999999998754
No 113
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=95.37 E-value=3.6 Score=41.69 Aligned_cols=131 Identities=18% Similarity=0.265 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 139 NRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAK 218 (682)
Q Consensus 139 ~~kL~~el~~l~~el~~lknq~~~~~~Lkerl~~lE~~~e~~~~~~~~~~E~el~~~~eek~~~~~ere~~L~~ql~~ae 218 (682)
+..++.++.....+...|+.+......--..+..+=..++.++...+.+.++. ..........+...-..+...|..++
T Consensus 11 ~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~-~~~~~~~i~~~~~erdq~~~dL~s~E 89 (207)
T PF05010_consen 11 IKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQ-KELSEAEIQKLLKERDQAYADLNSLE 89 (207)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh-HHhHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33444443333333444443333322222234444445555566555554444 22233333333333344566778888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 219 DSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQL 281 (682)
Q Consensus 219 ~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL 281 (682)
....+|+..++....-+..++.. + +.|..-++.-..|+...+.+.+.|+.-.
T Consensus 90 ~sfsdl~~ryek~K~vi~~~k~N--E---------E~Lkk~~~ey~~~l~~~eqry~aLK~hA 141 (207)
T PF05010_consen 90 KSFSDLHKRYEKQKEVIEGYKKN--E---------ETLKKCIEEYEERLKKEEQRYQALKAHA 141 (207)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHh--H---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888988888777666666542 2 2223333344445556666666666543
No 114
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=95.34 E-value=6.1 Score=44.10 Aligned_cols=152 Identities=13% Similarity=0.149 Sum_probs=75.9
Q ss_pred hHHHHH----HHhhhhccCCCCHHHHHHHHHHH--hhhhhhHHhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 005704 101 GENAFL----NIYQKLYEAPDPYPALASIAEQD--LKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLE 174 (682)
Q Consensus 101 aE~aFl----~~Y~~L~eaPDP~PlLe~s~~~~--~~~~~le~E~~kL~~el~~l~~el~~lknq~~~~~~Lkerl~~lE 174 (682)
+|..|| .-|+..-+..|-+..++.-+... .-.+.+-.++..|+.+++.+-..+.+...-...+..|++|-+.+.
T Consensus 229 Vek~lfdY~~~~Y~~fl~~~~~~~~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~ 308 (622)
T COG5185 229 VEKLLFDYFTESYKSFLKLEDNYEPSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALK 308 (622)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455544 45666665554444333322211 111234455666666666665555554433444444444444443
Q ss_pred HHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH-HHhhHHHH
Q 005704 175 QQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEE-RVAKQSEV 253 (682)
Q Consensus 175 ~~~e~~~~~~~~~~E~el~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee-~~a~~aEl 253 (682)
... .+.... -..+.-|.+.|-++...|+..++.-+.+|+.|++..+....++... ....+ -..-.+|-
T Consensus 309 ~D~-----nk~~~~----~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq--~Is~e~fe~mn~Er 377 (622)
T COG5185 309 SDS-----NKYENY----VNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQ--GISTEQFELMNQER 377 (622)
T ss_pred hhH-----HHHHHH----HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc--CCCHHHHHHHHHHH
Confidence 222 111111 1234556677777878887777777777777777666544444321 22222 22224555
Q ss_pred HHHHHHHHHH
Q 005704 254 NLLMDEVERA 263 (682)
Q Consensus 254 e~l~~DLEra 263 (682)
+.|..+|++-
T Consensus 378 e~L~reL~~i 387 (622)
T COG5185 378 EKLTRELDKI 387 (622)
T ss_pred HHHHHHHHHh
Confidence 5666666653
No 115
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.29 E-value=1.7 Score=41.49 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 309 KEKIISELNSELHNIETALSNERE 332 (682)
Q Consensus 309 ke~ei~~L~~e~~~Le~~L~~~r~ 332 (682)
+.+.|..|+.++......|.....
T Consensus 78 l~rriq~LEeele~ae~~L~e~~e 101 (143)
T PF12718_consen 78 LNRRIQLLEEELEEAEKKLKETTE 101 (143)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666555555544433
No 116
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=95.16 E-value=4.6 Score=45.43 Aligned_cols=23 Identities=13% Similarity=0.086 Sum_probs=15.4
Q ss_pred HhhHhhHHHHHHHHHHhHHhhcC
Q 005704 49 ENQENSQKNRRKLAESTRDFKKA 71 (682)
Q Consensus 49 ~~q~~s~~sRK~La~~Tk~Fkk~ 71 (682)
..|-+=+.||.-+..-.++++--
T Consensus 70 ~tq~~il~S~~v~~~Vi~~l~l~ 92 (444)
T TIGR03017 70 ATQVDIINSDRVAKKVVDKLKLD 92 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC
Confidence 34445577888887777777654
No 117
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.15 E-value=3.9 Score=40.70 Aligned_cols=37 Identities=19% Similarity=0.343 Sum_probs=17.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 404 ESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTA 444 (682)
Q Consensus 404 E~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~ 444 (682)
++++.+++++. ..+...+.++..-.+.+..+++.++.
T Consensus 150 da~l~e~t~~i----~eL~~~ieEy~~~teeLR~e~s~LEe 186 (193)
T PF14662_consen 150 DAILSERTQQI----EELKKTIEEYRSITEELRLEKSRLEE 186 (193)
T ss_pred HHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666655 34444444444444444443333333
No 118
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=95.14 E-value=5.8 Score=42.75 Aligned_cols=61 Identities=25% Similarity=0.228 Sum_probs=52.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005704 403 MESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY 464 (682)
Q Consensus 403 LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~ 464 (682)
+|. +.-+.++|+.+...++..+..-...+-.+-.+......++..+...+.+||+=.-.++
T Consensus 246 mek-m~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ 306 (309)
T PF09728_consen 246 MEK-MSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQ 306 (309)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444 6778899999999999999999999999999999999999999999999987665554
No 119
>PRK09039 hypothetical protein; Validated
Probab=95.05 E-value=5 Score=43.91 Aligned_cols=21 Identities=14% Similarity=0.186 Sum_probs=12.8
Q ss_pred hHHhhHHHHHHHHHHHHHHHH
Q 005704 135 LESENRKMKIELEEYRTEATH 155 (682)
Q Consensus 135 le~E~~kL~~el~~l~~el~~ 155 (682)
|..++..+..++++++.+++.
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~ 64 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAE 64 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 455666666666666666555
No 120
>PRK09039 hypothetical protein; Validated
Probab=95.05 E-value=1.7 Score=47.49 Aligned_cols=65 Identities=18% Similarity=0.155 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHH
Q 005704 251 SEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETA 326 (682)
Q Consensus 251 aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~ 326 (682)
+++.........++..+.-|.++++.||.+|+....... ..+......+.+|..|...+....+.
T Consensus 123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~-----------~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 123 QELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALD-----------ASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555555555666666555554442 22222334455577777777776654
No 121
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=95.03 E-value=1.9 Score=49.42 Aligned_cols=38 Identities=26% Similarity=0.297 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 248 AKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAN 285 (682)
Q Consensus 248 a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~ 285 (682)
....++..+...+..++.++..++.+...|+..+....
T Consensus 201 ~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~ 238 (498)
T TIGR03007 201 DYYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEE 238 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 45577888888888888899999999999988877433
No 122
>PLN03188 kinesin-12 family protein; Provisional
Probab=94.95 E-value=14 Score=46.23 Aligned_cols=153 Identities=20% Similarity=0.252 Sum_probs=87.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch--------HH-HHhhHHHHHHHHH
Q 005704 188 KQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSD--------EE-RVAKQSEVNLLMD 258 (682)
Q Consensus 188 ~E~el~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~--------ee-~~a~~aEle~l~~ 258 (682)
.|+.+.+++++.......=..-+-++-.+++.+--+|-+.+...+.-+.+.+.... .. ..+.+|||..|..
T Consensus 1090 ~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~~ 1169 (1320)
T PLN03188 1090 TEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKV 1169 (1320)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 34444555554433322223333456666777777777777777766665543221 11 3445899999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 259 EVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENS--LSAKEKIISELNSELHNIETALSNEREQHMN 336 (682)
Q Consensus 259 DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~e--l~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~ 336 (682)
+-|+.+ .-|-.+|..|+.||-..-.+.++... . ...-.|+| ...-++.....+.|+..+-..++.++.+|..
T Consensus 1170 ereker---~~~~~enk~l~~qlrdtaeav~aage--l-lvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~ 1243 (1320)
T PLN03188 1170 EREKER---RYLRDENKSLQAQLRDTAEAVQAAGE--L-LVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKHEN 1243 (1320)
T ss_pred HHHHHH---HHHHHhhHHHHHHHhhHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877754 34667888999998766555443210 0 00011111 1112333455667777777777777777777
Q ss_pred HHHHHHHHHH
Q 005704 337 EIKKLNALLI 346 (682)
Q Consensus 337 ~~~~L~~ql~ 346 (682)
+|..|++.+.
T Consensus 1244 e~~t~~q~~a 1253 (1320)
T PLN03188 1244 EISTLNQLVA 1253 (1320)
T ss_pred HHHHHHHHHh
Confidence 7766665553
No 123
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.83 E-value=2.1 Score=43.20 Aligned_cols=42 Identities=17% Similarity=0.176 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Q 005704 202 ILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSD 243 (682)
Q Consensus 202 ~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ 243 (682)
+...+...++.++..++-..+.|...+...+.+-.++..+..
T Consensus 90 ~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~ 131 (201)
T PF13851_consen 90 NLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666667777777777777777766666666655543
No 124
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=94.79 E-value=16 Score=45.97 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=30.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLI 453 (682)
Q Consensus 407 Ll~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~ 453 (682)
+++.|++|..+|...-...+.+.++.......+..+.+.....++-+
T Consensus 263 ~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi 309 (1109)
T PRK10929 263 QFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQS 309 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678888777777777666666666666666666555555444443
No 125
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.79 E-value=7.7 Score=42.34 Aligned_cols=13 Identities=23% Similarity=0.562 Sum_probs=8.7
Q ss_pred hhhcChhhhhhHh
Q 005704 595 EDDINPFAAFSKK 607 (682)
Q Consensus 595 E~~L~Pf~~F~~~ 607 (682)
-..|.|-.+||.+
T Consensus 422 ~d~l~~A~qfRAr 434 (499)
T COG4372 422 SDRLSPARQFRAR 434 (499)
T ss_pred ccccchHHHhhhc
Confidence 3467777777755
No 126
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=94.76 E-value=10 Score=43.74 Aligned_cols=40 Identities=10% Similarity=0.010 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005704 425 LSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY 464 (682)
Q Consensus 425 ~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~ 464 (682)
..+++.++..+...+-.....++.+-.....|--.|+++.
T Consensus 387 ~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~ 426 (511)
T PF09787_consen 387 WNELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLE 426 (511)
T ss_pred cHhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHH
Confidence 3466666666666666666666666655555555555555
No 127
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=94.68 E-value=5.8 Score=40.49 Aligned_cols=121 Identities=21% Similarity=0.253 Sum_probs=55.1
Q ss_pred hhhccCCCCHHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005704 110 QKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQ 189 (682)
Q Consensus 110 ~~L~eaPDP~PlLe~s~~~~~~~~~le~E~~kL~~el~~l~~el~~lknq~~~~~~Lkerl~~lE~~~e~~~~~~~~~~E 189 (682)
..+-.+-||.-.|...+. +++..+.+.+..+...-.....+..+ +..+..++.+++.+. ...+..-.
T Consensus 17 ~~~dk~EDP~~~l~q~ir------em~~~l~~ar~~lA~~~a~~k~~e~~---~~~~~~~~~~~~~~A----~~Al~~G~ 83 (219)
T TIGR02977 17 ALLDKAEDPEKMIRLIIQ------EMEDTLVEVRTTSARTIADKKELERR---VSRLEAQVADWQEKA----ELALSKGR 83 (219)
T ss_pred HHHHhccCHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH----HHHHHCCC
Confidence 345567799887766544 34445555555554433332222222 222333333333332 22222222
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Q 005704 190 RGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSD 243 (682)
Q Consensus 190 ~el~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ 243 (682)
..|-...-.++..+.+....|+.++..++..+..|+..+...+.++...+.+.+
T Consensus 84 EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 84 EDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222333344455555555555555555555555555555555554433
No 128
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.62 E-value=5.3 Score=39.75 Aligned_cols=131 Identities=16% Similarity=0.219 Sum_probs=67.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhccccC
Q 005704 306 LSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNS 385 (682)
Q Consensus 306 l~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~iEf~~ 385 (682)
+..++.--..|..++..|..++...-+.. +.|...+..++.....++..++ -|.-|+.||.-||..-..
T Consensus 10 v~dL~~~n~~L~~en~kL~~~ve~~ee~n----a~L~~e~~~L~~q~~s~Qqal~------~aK~l~eEledLk~~~~~- 78 (193)
T PF14662_consen 10 VEDLQLNNQKLADENAKLQRSVETAEEGN----AQLAEEITDLRKQLKSLQQALQ------KAKALEEELEDLKTLAKS- 78 (193)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH-
Confidence 33333334556666666665544332221 2233223333333333333222 366677777777743000
Q ss_pred ccchhhhhhcchhhhchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 386 IEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDIL 461 (682)
Q Consensus 386 ~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~ 461 (682)
.+ .. -.-|...+|.++.+...|-..+..++.+...+..+...+.....++-..+..|-..|-
T Consensus 79 lE----------E~----~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~ 140 (193)
T PF14662_consen 79 LE----------EE----NRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLC 140 (193)
T ss_pred HH----------HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHH
Confidence 00 00 1236666777777777777777777766666666666666666666555555555543
No 129
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=94.55 E-value=21 Score=46.27 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=22.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 501 DQSSMLKVICNQRDRFRARLRETEEEV 527 (682)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~r~~ELE~el 527 (682)
+...++..|..++..-+.-+.|-|.+|
T Consensus 1083 ~~~~l~~~l~~~i~~~~~ll~e~er~l 1109 (1353)
T TIGR02680 1083 TPAGLLARLEQEIAQRRELLTAREREL 1109 (1353)
T ss_pred CHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 567788888999888888888887777
No 130
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.51 E-value=13 Score=43.90 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 005704 264 QTRLLSLQREKDLLRSQLQSA 284 (682)
Q Consensus 264 ~~R~~~LE~e~E~Lr~eL~~a 284 (682)
+.+...|+-|++.|...+.+.
T Consensus 436 nak~~ql~~eletLn~k~qql 456 (1118)
T KOG1029|consen 436 NAKKKQLQQELETLNFKLQQL 456 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555443
No 131
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=94.50 E-value=15 Score=44.25 Aligned_cols=84 Identities=19% Similarity=0.213 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---chHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 201 EILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQ---SDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLL 277 (682)
Q Consensus 201 ~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k---~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~L 277 (682)
-.|+.+-..+.....++...-.+|-.++...+.++...... .+.+.......|+.+.....++..+..+...-.+.|
T Consensus 420 l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l 499 (980)
T KOG0980|consen 420 LAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESL 499 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33444444455555555555555555555544444422221 122344455666666666666666666666666666
Q ss_pred HHHHHhh
Q 005704 278 RSQLQSA 284 (682)
Q Consensus 278 r~eL~~a 284 (682)
+.||..+
T Consensus 500 ~~El~~l 506 (980)
T KOG0980|consen 500 RQELALL 506 (980)
T ss_pred HHHHHHH
Confidence 6666543
No 132
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.47 E-value=11 Score=42.85 Aligned_cols=48 Identities=17% Similarity=0.254 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHH
Q 005704 507 KVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGK 554 (682)
Q Consensus 507 ~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEk 554 (682)
.+..+-...+++..+..|.+...+-..+..-++.+...+.|=...-++
T Consensus 314 el~iseiqkLkqqL~smErek~~l~anL~dtqt~le~T~~~l~~~~er 361 (772)
T KOG0999|consen 314 ELNISEIQKLKQQLMSMEREKAELLANLQDTQTQLEHTEGDLMEQRER 361 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccchhHHHHHHHH
Confidence 344555566666677666666666666666666555555544433333
No 133
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.42 E-value=4.7 Score=38.33 Aligned_cols=17 Identities=35% Similarity=0.368 Sum_probs=7.2
Q ss_pred hhhhHHHHHHHHHHHHH
Q 005704 306 LSAKEKIISELNSELHN 322 (682)
Q Consensus 306 l~~ke~ei~~L~~e~~~ 322 (682)
+..+...|++|+.-+..
T Consensus 89 lq~~q~kv~eLE~~~~~ 105 (140)
T PF10473_consen 89 LQKKQEKVSELESLNSS 105 (140)
T ss_pred HHHHHHHHHHHHHHhHH
Confidence 33333444444444433
No 134
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.25 E-value=16 Score=43.59 Aligned_cols=62 Identities=18% Similarity=0.345 Sum_probs=30.9
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhh
Q 005704 402 KMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAEL--TAKINEQQKLIQKLEDDILKG 463 (682)
Q Consensus 402 ~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l--~~el~~~~~l~~kLE~DL~~~ 463 (682)
.+..++..-.+...+++..++..+..++.++..+...+... ...++.+......++.++..+
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~ 440 (650)
T TIGR03185 377 QLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRS 440 (650)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Confidence 34443343333445556666666666666666665555543 233444444444444444433
No 135
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=94.17 E-value=1.8 Score=49.09 Aligned_cols=87 Identities=17% Similarity=0.277 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 005704 249 KQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALS 328 (682)
Q Consensus 249 ~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~ 328 (682)
-...|+.|..++..+..|+.-...+.+.|...|..+.. ++..++.++..+...+.+|+..|.
T Consensus 418 Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~------------------ek~~l~eeL~~a~~~i~~LqDEL~ 479 (518)
T PF10212_consen 418 YMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEK------------------EKESLEEELKEANQNISRLQDELE 479 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999999999999876533 233445567777888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 329 NEREQHMNEIKKLNALLIEKEAALE 353 (682)
Q Consensus 329 ~~r~~~~~~~~~L~~ql~~~~~~~~ 353 (682)
..|..+..++..|.+.+..++..+.
T Consensus 480 TTr~NYE~QLs~MSEHLasmNeqL~ 504 (518)
T PF10212_consen 480 TTRRNYEEQLSMMSEHLASMNEQLA 504 (518)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888777766655544333
No 136
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=94.17 E-value=8 Score=44.26 Aligned_cols=97 Identities=15% Similarity=0.217 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccCC--CCCcC--------chhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 264 QTRLLSLQREKDLLRSQLQSANDEAGSRN--SDTLD--------SNSYLENSLSAKEKIISELNSELHNIETALSNEREQ 333 (682)
Q Consensus 264 ~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~--~~~~~--------~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~ 333 (682)
+-++.++.++.+.|+.++.+......+.. ....+ .....+.++...+.++..|..+...++..+...-.
T Consensus 274 hP~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~- 352 (498)
T TIGR03007 274 HPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPE- 352 (498)
T ss_pred ChHHHHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH-
Confidence 34456777788888877766533211100 00000 11233455555556666666666666666555443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005704 334 HMNEIKKLNALLIEKEAALEDMKKELQA 361 (682)
Q Consensus 334 ~~~~~~~L~~ql~~~~~~~~~le~~l~~ 361 (682)
...+...|+...+..+.....+-+.++.
T Consensus 353 ~~~el~~L~Re~~~~~~~Y~~l~~r~ee 380 (498)
T TIGR03007 353 VEAELTQLNRDYEVNKSNYEQLLTRRES 380 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666665555555555555443
No 137
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.97 E-value=20 Score=43.72 Aligned_cols=26 Identities=19% Similarity=0.013 Sum_probs=18.5
Q ss_pred CCCCCCChHHHHHhhhhcCChhHHHh
Q 005704 13 PNTSSSSPVSVISNFWKDFDLEKEKS 38 (682)
Q Consensus 13 ~~~~~~~~~~~a~~~W~~~dl~~lq~ 38 (682)
.++|+-|+|=||+.+--.=+.+.|..
T Consensus 33 rNGSGKSNFF~AIrFVLSDey~hLk~ 58 (1200)
T KOG0964|consen 33 RNGSGKSNFFHAIRFVLSDEYSHLKR 58 (1200)
T ss_pred CCCCCchhhHHHhhhhcccchhhcCH
Confidence 35577899999998876655665543
No 138
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.85 E-value=0.8 Score=45.87 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 250 QSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAN 285 (682)
Q Consensus 250 ~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~ 285 (682)
.+|+..+...+..+..++..|+.+|..|-.++-...
T Consensus 150 ~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k 185 (194)
T PF08614_consen 150 QDELQALQLQLNMLEEKLRKLEEENRELVERWMQRK 185 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555666667788889999999988876543
No 139
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=93.80 E-value=7.6 Score=45.95 Aligned_cols=102 Identities=20% Similarity=0.303 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 203 LQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQ 282 (682)
Q Consensus 203 ~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~ 282 (682)
++.+..+|-+-++.++...+.+..-+.....+|...+..++.+.+..--|++.....+...+-++.+.|.||-.|.--
T Consensus 453 lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~it-- 530 (861)
T PF15254_consen 453 LQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGIT-- 530 (861)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhH--
Confidence 455666677777777778888888777788888888888888888778888888888888888889999988777643
Q ss_pred hhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 005704 283 SANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSN 329 (682)
Q Consensus 283 ~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~ 329 (682)
+.++|.+|.+|++=++.|+.+...
T Consensus 531 -----------------------lrQrDaEi~RL~eLtR~LQ~Sma~ 554 (861)
T PF15254_consen 531 -----------------------LRQRDAEIERLRELTRTLQNSMAK 554 (861)
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788888777777766443
No 140
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=93.52 E-value=3.5 Score=41.02 Aligned_cols=89 Identities=20% Similarity=0.210 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 197 QKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQS-QLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKD 275 (682)
Q Consensus 197 eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~-eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E 275 (682)
.+..+....-...|+.++...++.+.+|...+...+. ...... . .........|+.+..-||-.+.|...|..-|.
T Consensus 8 qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~-~--~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~ 84 (182)
T PF15035_consen 8 QEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQR-R--RSEEEHSPDLEEALIRLEEEQQRSEELAQVNA 84 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCccccc-c--cccccCcccHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3344444555566677777777777777666632110 000000 0 00111235566677778888999999999999
Q ss_pred HHHHHHHhhhhhh
Q 005704 276 LLRSQLQSANDEA 288 (682)
Q Consensus 276 ~Lr~eL~~a~s~~ 288 (682)
-||++|+.++...
T Consensus 85 lLReQLEq~~~~N 97 (182)
T PF15035_consen 85 LLREQLEQARKAN 97 (182)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887665
No 141
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=93.27 E-value=17 Score=40.68 Aligned_cols=90 Identities=13% Similarity=0.287 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccc
Q 005704 415 EHELTQLKVKLSEKTSLLE----TAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEK 490 (682)
Q Consensus 415 ~~eLt~LR~~~~~l~~~l~----~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (682)
..+|+..+..+..-+.++. ....+...+...+.+.+++..+|+.++..
T Consensus 170 ~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~---------------------------- 221 (420)
T COG4942 170 LKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSA---------------------------- 221 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------
Confidence 3444444444444444444 34445555555566777777777777653
Q ss_pred cccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 491 ADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEK 543 (682)
Q Consensus 491 ~~~~~~~~~~~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~ 543 (682)
...-+..+..+=.+++..+..++.+..+....-..-+..-..
T Consensus 222 -----------~q~~l~eL~~~~~~L~~~Ias~e~~aA~~re~~aa~~aa~~~ 263 (420)
T COG4942 222 -----------DQKKLEELRANESRLKNEIASAEAAAAKAREAAAAAEAAAAR 263 (420)
T ss_pred -----------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777788888888888888777666666555544333
No 142
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=93.16 E-value=15 Score=39.73 Aligned_cols=137 Identities=18% Similarity=0.222 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhccccCccchhhh
Q 005704 313 ISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWE 392 (682)
Q Consensus 313 i~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~iEf~~~d~~~~~ 392 (682)
...+..+|..|..++..+-+++.---..+...+....-++.-++.+++.. ...+..-......++.+-+.
T Consensus 130 ~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~--~~~~~~e~~k~~~~~~~~l~-------- 199 (309)
T PF09728_consen 130 NIKLREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQ--QEEAEQEKEKAKQEKEILLE-------- 199 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHH--------
Confidence 44577777777777777777666544444444444444444444444432 11122222222222221000
Q ss_pred hhcchhhhchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 005704 393 VATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSS 466 (682)
Q Consensus 393 ~a~~~~~~~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~ 466 (682)
....+.. +......|..+|..+-....+.+..+.....-+.....+++...+-+.+||.+-......
T Consensus 200 ------~~~~~~~-~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k 266 (309)
T PF09728_consen 200 ------EAAQVQT-LKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSK 266 (309)
T ss_pred ------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001111 333344444444444444444444444444455555566777777777777776666543
No 143
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=93.08 E-value=14 Score=39.46 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=14.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHH
Q 005704 407 LLDKNRKMEHELTQLKVKLSEKTSLL 432 (682)
Q Consensus 407 Ll~kNrkL~~eLt~LR~~~~~l~~~l 432 (682)
+...-+.|.+++..||.++...+.+.
T Consensus 227 ~~shI~~Lr~EV~RLR~qL~~sq~e~ 252 (310)
T PF09755_consen 227 LSSHIRSLRQEVSRLRQQLAASQQEH 252 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566666666666665554443
No 144
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.03 E-value=4.8 Score=43.45 Aligned_cols=46 Identities=24% Similarity=0.406 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC--ChhhHHHHHHHHHHHHhc
Q 005704 336 NEIKKLNALLIEKEAALEDMKKELQARP--TSKMVDDLRKKVKILQAV 381 (682)
Q Consensus 336 ~~~~~L~~ql~~~~~~~~~le~~l~~~~--~~sDyeelK~EL~~Lk~i 381 (682)
..|.....+..+....++++++.+.... +..|+..|+..++.|+..
T Consensus 239 ~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 239 SKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 3445555566677777788888776663 446799999999999985
No 145
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=92.86 E-value=13 Score=38.29 Aligned_cols=153 Identities=22% Similarity=0.329 Sum_probs=75.9
Q ss_pred hhhccCCCCHHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005704 110 QKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQ 189 (682)
Q Consensus 110 ~~L~eaPDP~PlLe~s~~~~~~~~~le~E~~kL~~el~~l~~el~~lknq~~~~~~Lkerl~~lE~~~e~~~~~~~~~~E 189 (682)
..+-.+-||.-.|+..+. +.+.+..+++..+...-.....+.. .+..+.....+++.+. ...+..-.
T Consensus 17 ~~~dk~EDp~~~l~Q~ir------d~~~~l~~ar~~~A~~~a~~k~~e~---~~~~~~~~~~k~e~~A----~~Al~~g~ 83 (225)
T COG1842 17 ELLDKAEDPEKMLEQAIR------DMESELAKARQALAQAIARQKQLER---KLEEAQARAEKLEEKA----ELALQAGN 83 (225)
T ss_pred HHHHhhcCHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH----HHHHHCCC
Confidence 556668899977666444 3444666666555544333322211 2333333343443333 23333333
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhh-----HHHH---------HH
Q 005704 190 RGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAK-----QSEV---------NL 255 (682)
Q Consensus 190 ~el~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~-----~aEl---------e~ 255 (682)
..|-...-+++..++.....+...+..+...+..|+..+...+..+.+++++.+.-.+.. +.-| .-
T Consensus 84 E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~~s 163 (225)
T COG1842 84 EDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSS 163 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchh
Confidence 334444444445555555555555555555555555555555555555554443321111 0001 34
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005704 256 LMDEVERAQTRLLSLQREKD 275 (682)
Q Consensus 256 l~~DLEra~~R~~~LE~e~E 275 (682)
.+.-+++.+.|+...|.+.+
T Consensus 164 a~~~fer~e~kiee~ea~a~ 183 (225)
T COG1842 164 AMAAFERMEEKIEEREARAE 183 (225)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777766643
No 146
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.63 E-value=4.4 Score=46.70 Aligned_cols=84 Identities=21% Similarity=0.305 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH------HHhhHHHHHHHHHHHHHHHHHHH
Q 005704 195 ENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEE------RVAKQSEVNLLMDEVERAQTRLL 268 (682)
Q Consensus 195 ~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee------~~a~~aEle~l~~DLEra~~R~~ 268 (682)
.+.+...++......|+.++..++..+.+++..++....+|..++.....+ ..++..+++.|...|+....++.
T Consensus 419 ~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve 498 (652)
T COG2433 419 VYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVE 498 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555555555555555555555444333211 22234444555555555555555
Q ss_pred HHHHHHHHHH
Q 005704 269 SLQREKDLLR 278 (682)
Q Consensus 269 ~LE~e~E~Lr 278 (682)
.|+++.+.|+
T Consensus 499 ~L~~~l~~l~ 508 (652)
T COG2433 499 ELERKLAELR 508 (652)
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 147
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.39 E-value=25 Score=40.49 Aligned_cols=76 Identities=14% Similarity=0.267 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--h----hcchHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 005704 196 NQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEV--R----AQSDEERVAKQSEVNLLMDEVERAQTRLLS 269 (682)
Q Consensus 196 ~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l--~----~k~~ee~~a~~aEle~l~~DLEra~~R~~~ 269 (682)
+.-+...|..+...+...++.-+.+++.|+...+..+..+.-. . .+...+.....-+|+++..++++..+.+-+
T Consensus 285 ~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~ 364 (581)
T KOG0995|consen 285 MKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWE 364 (581)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444555555555544444444444444443333222211 0 112233444456677777777777666644
Q ss_pred HH
Q 005704 270 LQ 271 (682)
Q Consensus 270 LE 271 (682)
++
T Consensus 365 ~~ 366 (581)
T KOG0995|consen 365 LK 366 (581)
T ss_pred HH
Confidence 33
No 148
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=92.27 E-value=15 Score=38.50 Aligned_cols=131 Identities=16% Similarity=0.187 Sum_probs=73.6
Q ss_pred hhHHHHHHHHHHHHhccccCccchhhhhhcchhhhchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 366 KMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAK 445 (682)
Q Consensus 366 sDyeelK~EL~~Lk~iEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~e 445 (682)
.+|..||+|..-|-.+ .+. |-.++.+|.++|.....++.-++..+......+..++++
T Consensus 60 ~e~s~LkREnq~l~e~---------------------c~~-lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqe 117 (307)
T PF10481_consen 60 NEYSALKRENQSLMES---------------------CEN-LEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQE 117 (307)
T ss_pred hhhhhhhhhhhhHHHH---------------------HHH-HHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577777777766532 111 555778899999988888888888877777766666655
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 005704 446 INEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEE 525 (682)
Q Consensus 446 l~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~r~~ELE~ 525 (682)
+.. +..+|++.+.... ..+..+.. +++. ..+-+ .|..-+| -.--.+..+|.+
T Consensus 118 lkr-------~KsELErsQ~~~~-----~~~~sl~~-~stp----qk~f~----------~p~tp~q-~~~~sk~e~L~e 169 (307)
T PF10481_consen 118 LKR-------CKSELERSQQAAS-----SGDVSLNP-CSTP----QKSFA----------TPLTPSQ-YYSDSKYEELQE 169 (307)
T ss_pred HHH-------HHHHHHHHHHhhc-----cCCccccc-cCCc----hhhcc----------CCCChhh-hhhhhhHHHHHH
Confidence 544 4455555553321 00000000 0000 00000 0000111 112346677888
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 005704 526 EVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 526 el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
...+.-..-..|..|+..|+.
T Consensus 170 kynkeveerkrle~e~k~lq~ 190 (307)
T PF10481_consen 170 KYNKEVEERKRLEAEVKALQA 190 (307)
T ss_pred HHHHHHHHHhhHHHHHHHHhc
Confidence 887777777788888888886
No 149
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=92.13 E-value=17 Score=42.71 Aligned_cols=39 Identities=23% Similarity=0.383 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH
Q 005704 339 KKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQ 379 (682)
Q Consensus 339 ~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk 379 (682)
..|.++++..++.+..+...+.++ ..|.+.|..++..|+
T Consensus 219 n~L~~e~~s~kk~l~~~~~~k~rl--~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 219 NRLEQELESVKKQLEEMRHDKDKL--RTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHH
Confidence 334444445555555555555555 356777777777776
No 150
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=92.00 E-value=26 Score=39.90 Aligned_cols=197 Identities=16% Similarity=0.268 Sum_probs=89.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 005704 159 QQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLF-- 236 (682)
Q Consensus 159 q~~~~~~Lkerl~~lE~~~e~~~~~~~~~~E~el~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~-- 236 (682)
++..-+-++.++-+++..+-+.++..-.+ .+.......-...-+.++...|.+.+..+...+++|...+...+..+.
T Consensus 299 R~~k~~~e~sk~eeL~~~L~~~lea~q~a-gkla~Qe~~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~q 377 (531)
T PF15450_consen 299 RDAKEKLEESKAEELATKLQENLEAMQLA-GKLAQQETQSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQ 377 (531)
T ss_pred HHHHhHHHHhhHHHHHHHHHHHHHHHHHh-hhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 33333444455555555554444431111 111111112222333444455555555555555555555444333332
Q ss_pred --HhhhcchHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhH
Q 005704 237 --EVRAQSDEERVAKQSEVNLLMDEVERA----QTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKE 310 (682)
Q Consensus 237 --~l~~k~~ee~~a~~aEle~l~~DLEra----~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke 310 (682)
.+..+.++-.......+--...++... ...+.++...++.|-.++....+....-.+ +.+....++-.+.+
T Consensus 378 EqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ks---d~d~kIdtE~k~R~ 454 (531)
T PF15450_consen 378 EQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEKHLKEVQEKVDSLPQQIEEVSDKCDLHKS---DSDTKIDTEGKARE 454 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh---hhhhhccHHHHHHH
Confidence 222222222111111112222222222 223345555566666666655543221000 12224445566667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005704 311 KIISELNSELHNIETALSNEREQH-MNEIKKLNALLIEKEAALEDMKKELQA 361 (682)
Q Consensus 311 ~ei~~L~~e~~~Le~~L~~~r~~~-~~~~~~L~~ql~~~~~~~~~le~~l~~ 361 (682)
.+|..+..+...+-.++.-.+... ...++.++..+. ...+-.|+..++.
T Consensus 455 ~eV~~vRqELa~lLssvQ~~~e~~~~rkiaeiqg~l~--~~qi~kle~siq~ 504 (531)
T PF15450_consen 455 REVGAVRQELATLLSSVQLLKEDNPGRKIAEIQGKLA--TNQIMKLENSIQT 504 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHHH--HHHHHHHHHHHHH
Confidence 778888888888777766666543 335666666666 3345555554443
No 151
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=91.97 E-value=49 Score=42.95 Aligned_cols=38 Identities=26% Similarity=0.400 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005704 251 SEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEA 288 (682)
Q Consensus 251 aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~ 288 (682)
.+++....+++.++.++..++.+.+.|+.++..++++.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~ 327 (1353)
T TIGR02680 290 DELETAREEERELDARTEALEREADALRTRLEALQGSP 327 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 45555666667777777778888888888887776554
No 152
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=91.95 E-value=31 Score=40.66 Aligned_cols=272 Identities=20% Similarity=0.261 Sum_probs=137.9
Q ss_pred hHHhhHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005704 135 LESENRKMKIELEEYRTEATHLKNQQS-TIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQ 213 (682)
Q Consensus 135 le~E~~kL~~el~~l~~el~~lknq~~-~~~~Lkerl~~lE~~~e~~~~~~~~~~E~el~~~~eek~~~~~ere~~L~~q 213 (682)
....+.+|+..+..|+.++.......+ --..|++|..+++-+. +.. +.|..++... .+...-++.+
T Consensus 329 h~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~AElevER-------v~s--ktLQ~ELsrA----qea~~~lqqq 395 (739)
T PF07111_consen 329 HRDSVKQLRGQVASLQEEVASQQQEQAILQHSLQDKAAELEVER-------VGS--KTLQAELSRA----QEARRRLQQQ 395 (739)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-------Hhh--HHHHHHHHHH----HHHHHHHHHH
Confidence 445667788888888888777543322 3455666655553322 110 1111222111 1222235556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc--C
Q 005704 214 LRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGS--R 291 (682)
Q Consensus 214 l~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~--~ 291 (682)
...++..++-+.......|.-|. +..+.++-....|-....|+.-+-+++..++.-++....-... .
T Consensus 396 ~~~aee~Lk~v~eav~S~q~~L~-----------s~ma~ve~a~aRL~sL~~RlSyAvrrv~tiqGL~Ark~Alaqlrqe 464 (739)
T PF07111_consen 396 TASAEEQLKLVSEAVSSSQQWLE-----------SQMAKVEQALARLPSLSNRLSYAVRRVHTIQGLMARKLALAQLRQE 464 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhHHHHHHhcccchhHHHHHHHHHHHHHHhc
Confidence 66666666666655554443221 1223445555556666677777777777888877654332110 0
Q ss_pred CCC-CcCchhhhHhhhhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 005704 292 NSD-TLDSNSYLENSLSAKEKIISELNSELHN----IETALSNEREQHMNEI-------KKLNALLIEKEAALEDMKKEL 359 (682)
Q Consensus 292 ~~~-~~~~~s~le~el~~ke~ei~~L~~e~~~----Le~~L~~~r~~~~~~~-------~~L~~ql~~~~~~~~~le~~l 359 (682)
..+ ..-...++..++..+..+..+|.+++.. ++......|+....+. ..|+..+......++.++..+
T Consensus 465 ~~~~~pp~~~dL~~ELqqLReERdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL 544 (739)
T PF07111_consen 465 QCPPSPPSVTDLSLELQQLREERDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQL 544 (739)
T ss_pred cCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0112336777777777777777766552 2233334444444433 333333333333333333333
Q ss_pred hcC-----CChhhHHHHHHHHHHHHhccccCccchhhhhhcchhhhchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 005704 360 QAR-----PTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLET 434 (682)
Q Consensus 360 ~~~-----~~~sDyeelK~EL~~Lk~iEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~ 434 (682)
... .+...-..+.+||.--+.+ |+. + ......-+|+-|.++-..++..|...|..|....-.+.+
T Consensus 545 ~~Ar~~lqes~eea~~lR~EL~~QQ~~-y~~--------a-lqekvsevEsrl~E~L~~~E~rLNeARREHtKaVVsLRQ 614 (739)
T PF07111_consen 545 EAARKSLQESTEEAAELRRELTQQQEV-YER--------A-LQEKVSEVESRLREQLSEMEKRLNEARREHTKAVVSLRQ 614 (739)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH-HHH--------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 0011233344444443322 110 0 001244678888888888888888888888877777776
Q ss_pred HHHHHH
Q 005704 435 AEGKIA 440 (682)
Q Consensus 435 l~~~~~ 440 (682)
++....
T Consensus 615 ~qrqa~ 620 (739)
T PF07111_consen 615 IQRQAA 620 (739)
T ss_pred HHHHHH
Confidence 665443
No 153
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.75 E-value=24 Score=38.96 Aligned_cols=15 Identities=13% Similarity=0.206 Sum_probs=9.9
Q ss_pred HHHHhhhhhcChhhh
Q 005704 589 KYKKMYEDDINPFAA 603 (682)
Q Consensus 589 ~Y~~~YE~~L~Pf~~ 603 (682)
.-+..|+-.|+||..
T Consensus 400 ~~~~~~~~~l~~~~~ 414 (423)
T TIGR01843 400 GERTVIEYLLKPITD 414 (423)
T ss_pred CCccHHHHHHHHHHH
Confidence 345677777778744
No 154
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=91.67 E-value=33 Score=40.37 Aligned_cols=138 Identities=20% Similarity=0.299 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCC
Q 005704 214 LRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNS 293 (682)
Q Consensus 214 l~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~ 293 (682)
|.+++..+..|+.-.+.....+..+..+-+.-..-..+|+..+..-...-.......-.++..+|.++.
T Consensus 389 L~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k----------- 457 (594)
T PF05667_consen 389 LPDAEENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIK----------- 457 (594)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH-----------
Confidence 444566666666666666666666655544444333444433332211111111222233333333332
Q ss_pred CCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHH
Q 005704 294 DTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRK 373 (682)
Q Consensus 294 ~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~ 373 (682)
.++.++..|+..+.+|..++.++-.... |..+..-|-+.- .+.+.+.+++.+ + ..|.-.|.+
T Consensus 458 -------~~~~e~~~Kee~~~qL~~e~e~~~k~~~--Rs~Yt~RIlEIv---~NI~KQk~eI~K----I--l~DTr~lQk 519 (594)
T PF05667_consen 458 -------EIEEEIRQKEELYKQLVKELEKLPKDVN--RSAYTRRILEIV---KNIRKQKEEIEK----I--LSDTRELQK 519 (594)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHH---HhHHHHHHHHHH----H--HHHHHHHHH
Confidence 4455566666667777777766654422 444444443332 232222233222 2 345666666
Q ss_pred HHHHHHh
Q 005704 374 KVKILQA 380 (682)
Q Consensus 374 EL~~Lk~ 380 (682)
|+..|..
T Consensus 520 eiN~l~g 526 (594)
T PF05667_consen 520 EINSLTG 526 (594)
T ss_pred HHHHHHH
Confidence 6666653
No 155
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=91.59 E-value=23 Score=38.32 Aligned_cols=83 Identities=17% Similarity=0.268 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 204 QEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAK--QSEVNLLMDEVERAQTRLLSLQREKDLLRSQL 281 (682)
Q Consensus 204 ~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~--~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL 281 (682)
.++.+.|...+..+..++.+++.-.......+...+.... ..++. ..|-+.+...||+++.+...|++.+-.+-++.
T Consensus 78 re~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~-~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEk 156 (319)
T PF09789_consen 78 REQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDE-GIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEK 156 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhc-cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443333333333322211 11111 26778899999999999999999999998888
Q ss_pred Hhhhhh
Q 005704 282 QSANDE 287 (682)
Q Consensus 282 ~~a~s~ 287 (682)
+++...
T Consensus 157 eEl~~E 162 (319)
T PF09789_consen 157 EELVTE 162 (319)
T ss_pred HHHHHH
Confidence 766543
No 156
>PRK11281 hypothetical protein; Provisional
Probab=91.25 E-value=51 Score=41.71 Aligned_cols=22 Identities=9% Similarity=0.208 Sum_probs=14.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH
Q 005704 412 RKMEHELTQLKVKLSEKTSLLE 433 (682)
Q Consensus 412 rkL~~eLt~LR~~~~~l~~~l~ 433 (682)
++|.++++++|...-++.+..+
T Consensus 356 ~~l~~~iAdlrl~~f~~~q~~~ 377 (1113)
T PRK11281 356 EGLADRIADLRLEQFEINQQRD 377 (1113)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777776666654433
No 157
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=91.25 E-value=16 Score=38.10 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=16.9
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHH
Q 005704 405 SLLLDKNRKMEHELTQLKVKLSEKT 429 (682)
Q Consensus 405 ~lLl~kNrkL~~eLt~LR~~~~~l~ 429 (682)
.-.++||++|+.+|..|+..+..+.
T Consensus 178 ~t~~EKnk~lq~QL~~L~~EL~~~k 202 (246)
T PF00769_consen 178 VTYAEKNKRLQEQLKELKSELEQLK 202 (246)
T ss_dssp --HHHH-HHHHHHHHHHHHHHHTTB
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3467888888888888877766554
No 158
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=91.23 E-value=42 Score=40.68 Aligned_cols=61 Identities=13% Similarity=0.066 Sum_probs=32.1
Q ss_pred HHHHHhhhhhhhHHHHHHHhhhhccCCCCHHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHhhhhH
Q 005704 90 EVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQ 160 (682)
Q Consensus 90 EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~~~le~E~~kL~~el~~l~~el~~lknq~ 160 (682)
.+...+.++.....++..| +|=.++|+.-+... +++-.....+...+.++..-|..+-+.+
T Consensus 493 ~~~s~~~~s~eL~~avskI-------sEfv~~LekeVh~C---~DLLsgkadLE~fieE~s~tLdwIls~~ 553 (769)
T PF05911_consen 493 ESKSMIEISQELNVAVSKI-------SEFVLVLEKEVHVC---QDLLSGKADLERFIEEFSLTLDWILSNC 553 (769)
T ss_pred HHHHHHhhcccHHHHHHhH-------HHHHHHHHHHHHHH---HHHhcchhHHHHHHHHHHHHHHHHHHcc
Confidence 4555566777777777666 45556665544322 1233344444445555555444444443
No 159
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=91.17 E-value=36 Score=39.86 Aligned_cols=101 Identities=21% Similarity=0.217 Sum_probs=52.8
Q ss_pred CCCChHHHHHhhhhc---CChhHH-------------------HhhHhHHHHHHHHhhHhhHHHHHHHHHHhHHhhcCCc
Q 005704 16 SSSSPVSVISNFWKD---FDLEKE-------------------KSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASP 73 (682)
Q Consensus 16 ~~~~~~~~a~~~W~~---~dl~~l-------------------q~~LD~~~~ei~~~q~~s~~sRK~La~~Tk~Fkk~~~ 73 (682)
-+...|...=+.|.+ ..|+.+ ++.++..-..|.....+-..-+..|.+... ..
T Consensus 61 es~~~f~~w~~~~~~i~~~~~~~ie~~l~~ae~~~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~-----~e 135 (569)
T PRK04778 61 QSEEKFEEWRQKWDEIVTNSLPDIEEQLFEAEELNDKFRFRKAKHEINEIESLLDLIEEDIEQILEELQELLE-----SE 135 (569)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH
Confidence 345567777777755 233333 333444444444444433333333333322 33
Q ss_pred HHHHHhhHHHHHHhHH-HHHHHhhhhhhhHHH------------HHHHhhhhccCCCCHHH
Q 005704 74 EEKLSLFNSLLKGYQE-EVDNLTKRAKFGENA------------FLNIYQKLYEAPDPYPA 121 (682)
Q Consensus 74 eekl~~~~~LLK~yQ~-EID~LTkRsK~aE~a------------Fl~~Y~~L~eaPDP~Pl 121 (682)
++-+..|..|.+-|+. -=+-|++|.+++.+. =|+-|..|.+..||.-+
T Consensus 136 ~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A 196 (569)
T PRK04778 136 EKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGDYVEA 196 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 4556677777777766 233345555554432 24667778888888654
No 160
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=91.01 E-value=49 Score=41.08 Aligned_cols=27 Identities=19% Similarity=0.095 Sum_probs=15.3
Q ss_pred ChhhhhhHhHHHHHhhhcCcchhHHHhh
Q 005704 599 NPFAAFSKKERDQRYKELGIRDRITLSS 626 (682)
Q Consensus 599 ~Pf~~F~~~E~~r~~~~l~~~er~~l~~ 626 (682)
.+|.-+.+.+ -|.+..||-.|++.+++
T Consensus 800 ~~~~~~~~~~-~r~~~~LSGGE~~~~sL 826 (908)
T COG0419 800 LVVVVYDGGE-VRPIKTLSGGERFLASL 826 (908)
T ss_pred eEEEEecCCC-ccccccCCchHHHHHHH
Confidence 3444444444 45566777777775443
No 161
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=90.97 E-value=26 Score=37.87 Aligned_cols=220 Identities=21% Similarity=0.242 Sum_probs=110.8
Q ss_pred HHHHHhHHHHHHHhhhhhhhHHHHHHHhhhhccCCCCHHHH-HHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHhhhhH
Q 005704 82 SLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPAL-ASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQ 160 (682)
Q Consensus 82 ~LLK~yQ~EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~PlL-e~s~~~~~~~~~le~E~~kL~~el~~l~~el~~lknq~ 160 (682)
|+|-.||-=.--|.++=..+=..|-++=.....-|-| ++ ++... . ++.+. . +...|.-+|
T Consensus 63 P~LElY~~sC~EL~~~I~egr~~~~~~E~et~~~nPp--LF~EY~~a-~-------~d~r~---l---m~~Qf~lvK--- 123 (312)
T smart00787 63 PLLELYQFSCKELKKYISEGRDLFKEIEEETLINNPP--LFKEYFSA-S-------PDVKL---L---MDKQFQLVK--- 123 (312)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH--HHHHHHcC-C-------HHHHH---H---HHHHHHHHH---
Confidence 7899999988888888877777777777766644433 33 32110 0 01100 0 011111111
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 161 STIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRA 240 (682)
Q Consensus 161 ~~~~~Lkerl~~lE~~~e~~~~~~~~~~E~el~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~ 240 (682)
++-+|..+--=++=.+ ..-..+...+++....+......|.++++.+..-+-.+...+...+.++..++.
T Consensus 124 -~~aRl~ak~~WYeWR~---------kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~ 193 (312)
T smart00787 124 -TFARLEAKKMWYEWRM---------KLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQ 193 (312)
T ss_pred -HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223332211111000 011222333444444445555556666666666666666666666666666655
Q ss_pred cchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHH
Q 005704 241 QSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSEL 320 (682)
Q Consensus 241 k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~ 320 (682)
..++-..--.+|+..+...|......+...-...+.++.+|....+.. .....++.++.+++
T Consensus 194 ~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I------------------~~~~~~k~e~~~~I 255 (312)
T smart00787 194 LEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKI------------------EDLTNKKSELNTEI 255 (312)
T ss_pred hHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHH
Confidence 444333333455555555555544444444444555555544333332 22334466677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 321 HNIETALSNEREQHMNEIKKLNALLIEK 348 (682)
Q Consensus 321 ~~Le~~L~~~r~~~~~~~~~L~~ql~~~ 348 (682)
..++..+..-|.-...++..|...+..+
T Consensus 256 ~~ae~~~~~~r~~t~~Ei~~Lk~~~~~L 283 (312)
T smart00787 256 AEAEKKLEQCRGFTFKEIEKLKEQLKLL 283 (312)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 7666665555555566666666555443
No 162
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=90.85 E-value=43 Score=40.16 Aligned_cols=54 Identities=20% Similarity=0.220 Sum_probs=29.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005704 407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKG 463 (682)
Q Consensus 407 Ll~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~ 463 (682)
|..|-+....++..++..+..+..++..++.... .+....+..+..|...+...
T Consensus 357 Le~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~---~ek~~~~~e~q~L~ekl~~l 410 (717)
T PF09730_consen 357 LECKYKVAVSEVIQLKAELKALKSKYNELEERYK---QEKDRLESEVQNLKEKLMSL 410 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 5666666666777776666666666666655222 22333344444444444433
No 163
>PF13514 AAA_27: AAA domain
Probab=90.83 E-value=57 Score=41.50 Aligned_cols=40 Identities=28% Similarity=0.387 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 507 KVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 507 ~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
+.+....+....++..|+.++......+..++.++..|..
T Consensus 892 ~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~ 931 (1111)
T PF13514_consen 892 DELEAELEELEEELEELEEELEELQEERAELEQELEALEG 931 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4455666666666666777776666666666666666654
No 164
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=90.79 E-value=24 Score=37.04 Aligned_cols=41 Identities=17% Similarity=0.325 Sum_probs=27.6
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 408 LDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINE 448 (682)
Q Consensus 408 l~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~ 448 (682)
+-.|..+..++...|..+++++..+..|..++..+.....+
T Consensus 185 ~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~ 225 (258)
T PF15397_consen 185 TLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQD 225 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 36677787888777777777777766666666555555443
No 165
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=90.43 E-value=52 Score=40.43 Aligned_cols=88 Identities=15% Similarity=0.129 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 202 ILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEER---VAKQSEVNLLMDEVERAQTRLLSLQREKDLLR 278 (682)
Q Consensus 202 ~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~---~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr 278 (682)
.+.+..+-+.+..++++....++.+.+...+..+.....+.-+-. -...+++++...++|..+.+....+++++..+
T Consensus 266 ~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~ 345 (1072)
T KOG0979|consen 266 KLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAK 345 (1072)
T ss_pred HHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445666777777888888888888888877666543322 22367889999999999999999999999999
Q ss_pred HHHHhhhhhhc
Q 005704 279 SQLQSANDEAG 289 (682)
Q Consensus 279 ~eL~~a~s~~~ 289 (682)
..+..++...+
T Consensus 346 k~i~~~q~el~ 356 (1072)
T KOG0979|consen 346 KMILDAQAELQ 356 (1072)
T ss_pred HHHHHHHhhhh
Confidence 99888877654
No 166
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.39 E-value=33 Score=38.11 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=42.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005704 411 NRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS 465 (682)
Q Consensus 411 NrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~ 465 (682)
-.++...|..+|.++...+.........+.....+......++..|=..|.+++-
T Consensus 334 ~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrkelehlr~ 388 (502)
T KOG0982|consen 334 DQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRKELEHLRR 388 (502)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777777777777888888888888888888888874
No 167
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=90.29 E-value=25 Score=36.43 Aligned_cols=70 Identities=19% Similarity=0.200 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHH
Q 005704 193 AEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVER 262 (682)
Q Consensus 193 ~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEr 262 (682)
+.++.+.+.--.+=++.|..+|.+++..+++|.+.......++..++.+.+.........+.-|..|+-.
T Consensus 33 reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsq 102 (333)
T KOG1853|consen 33 REELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQ 102 (333)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555556677788889999999999988888777777777777665544444444555555433
No 168
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=90.21 E-value=3 Score=35.24 Aligned_cols=69 Identities=29% Similarity=0.411 Sum_probs=49.6
Q ss_pred hhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q 005704 301 YLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKV 375 (682)
Q Consensus 301 ~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL 375 (682)
+++..+..++.+|.+|..|-..|..+ .-.+...|..|..++......+..+...++.. ..+++.++..+
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk~----el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~--e~~~~~l~~~l 70 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSKK----ELKLNNTIKKLRAKIKELEKQIKELKKKLEEL--EKELESLEERL 70 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHh
Confidence 45566889999999999999887765 44567777888887777777777777666654 34455555443
No 169
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=90.12 E-value=22 Score=37.07 Aligned_cols=50 Identities=18% Similarity=0.312 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005704 414 MEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKG 463 (682)
Q Consensus 414 L~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~ 463 (682)
|..++..+...+..+......-..+...+..++...+....+--..|..+
T Consensus 80 Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~~~ 129 (246)
T PF00769_consen 80 LEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEELLEV 129 (246)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444445555444444444444444333
No 170
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=89.85 E-value=40 Score=38.25 Aligned_cols=103 Identities=14% Similarity=0.094 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 255 LLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQH 334 (682)
Q Consensus 255 ~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~ 334 (682)
.+..++..++.++..++.+...|+.++.........-.. .... .....+.....+...+..++...+..+...+...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~rL~a~~~~~~~~~~~f~~-~~~~--~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~ 170 (457)
T TIGR01000 94 NEENQKQLLEQQLDNLKDQKKSLDTLKQSIENGRNQFPT-DDSF--GYRNLFNGYLAQVESLTSETQQQNDKSQTQNEAA 170 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCC-Ccch--hHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 345566667777778888888887776543221110000 0000 0111122222233444444444444444444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005704 335 MNEIKKLNALLIEKEAALEDMKKELQ 360 (682)
Q Consensus 335 ~~~~~~L~~ql~~~~~~~~~le~~l~ 360 (682)
..+++.+..++..+...+..++..+.
T Consensus 171 ~~~~~~~~~~i~~~~~~~~~~~~~~~ 196 (457)
T TIGR01000 171 EKTKAQLDQQISKTDQKLQDYQALKN 196 (457)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555554444
No 171
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=89.68 E-value=31 Score=37.77 Aligned_cols=50 Identities=36% Similarity=0.428 Sum_probs=21.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 412 RKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDIL 461 (682)
Q Consensus 412 rkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~ 461 (682)
..++.++...+..+...+..+..++..+..+..+++.......+|+.++.
T Consensus 224 ~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~ 273 (344)
T PF12777_consen 224 EEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIE 273 (344)
T ss_dssp HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444444444433
No 172
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=89.63 E-value=50 Score=39.01 Aligned_cols=51 Identities=10% Similarity=0.057 Sum_probs=23.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005704 413 KMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKG 463 (682)
Q Consensus 413 kL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~ 463 (682)
.+....+.+..++.++...+.........+..++....+.-.+++.=+..+
T Consensus 395 ~~~~~~~~~~tq~~Dl~~~~~~~~~~~krl~~~l~~~tk~reqlk~lV~~~ 445 (716)
T KOG4593|consen 395 RRLQKRALLLTQERDLNRAILGSKDDEKRLAEELPQVTKEREQLKGLVQKV 445 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555444444444444444444444444333333
No 173
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.42 E-value=31 Score=41.55 Aligned_cols=79 Identities=14% Similarity=0.220 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 200 LEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEE-RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLR 278 (682)
Q Consensus 200 ~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee-~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr 278 (682)
.+.|......+.+++..+...++.++..++.-+..+. .+...... ..--..+.+.+..-|-.-...+.++-.++..++
T Consensus 634 Er~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~-~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~ 712 (717)
T PF10168_consen 634 EREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIE-SQKSPKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNIK 712 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556565666666666666666666666655444333 11110000 111234455555544444444555544444444
Q ss_pred H
Q 005704 279 S 279 (682)
Q Consensus 279 ~ 279 (682)
.
T Consensus 713 ~ 713 (717)
T PF10168_consen 713 K 713 (717)
T ss_pred H
Confidence 3
No 174
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=89.30 E-value=53 Score=38.88 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=28.2
Q ss_pred CchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005704 297 DSNSYLENSLSAKEKIISELNSELHNIETALSNER 331 (682)
Q Consensus 297 ~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r 331 (682)
+.+.++|.+|..++..+.++++-+..|+..|+-..
T Consensus 91 d~ndklE~~Lankda~lrq~eekn~slqerLelaE 125 (916)
T KOG0249|consen 91 DLNDKLENELANKDADLRQNEEKNRSLQERLELAE 125 (916)
T ss_pred cchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhh
Confidence 56779999999999999999888888887765433
No 175
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=89.14 E-value=52 Score=38.54 Aligned_cols=128 Identities=14% Similarity=0.213 Sum_probs=78.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccc
Q 005704 403 MESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEA 482 (682)
Q Consensus 403 LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~ 482 (682)
+=+.+.+.=+.+...|+.+...+.++...+..+.++-......+..++..+...-..+.+.+= |
T Consensus 373 ~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nL---------P------- 436 (560)
T PF06160_consen 373 PYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNL---------P------- 436 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---------C-------
Confidence 345577777778888888888888888888888887777777777777777776666655431 1
Q ss_pred ccccc-ccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHH
Q 005704 483 GGTEL-SEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKI 555 (682)
Q Consensus 483 ~~~~~-~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEki 555 (682)
|+++- .... ...+..+.-|..+.++.+.-+..+...+......+..|...+..+- ||..|-|++
T Consensus 437 Glp~~y~~~~--------~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li-~~A~L~E~~ 501 (560)
T PF06160_consen 437 GLPEDYLDYF--------FDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEELI-DNATLAEQL 501 (560)
T ss_pred CCCHHHHHHH--------HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 11100 0000 0233345555555555555666666666666666666666666554 356665553
No 176
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=89.09 E-value=32 Score=36.07 Aligned_cols=54 Identities=13% Similarity=0.189 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHH
Q 005704 210 LQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERA 263 (682)
Q Consensus 210 L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra 263 (682)
....+..++.++..|.+.+..++.+|.-|.+=-|.+=-.++=.|..|...|+..
T Consensus 79 ~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~l 132 (258)
T PF15397_consen 79 EESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQL 132 (258)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 445667777777788888888888888887765656445555666666666554
No 177
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.84 E-value=27 Score=36.11 Aligned_cols=79 Identities=28% Similarity=0.426 Sum_probs=48.1
Q ss_pred hHHHHHHHhhhhhhhHHHHHHHhhhhccCCCCHHHHHHHHHHHhhhh-hhHHhhHHHHHHHHHHHHHHHHhhhh-HH-HH
Q 005704 87 YQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLS-ELESENRKMKIELEEYRTEATHLKNQ-QS-TI 163 (682)
Q Consensus 87 yQ~EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~~-~le~E~~kL~~el~~l~~el~~lknq-~~-~~ 163 (682)
-|.|||.+-|+-...=..|=.+|.++..+.-|. +-.++. +|..|+.||+ +++..+..|-+- ++ +-
T Consensus 6 LQ~Eid~~lKkv~EG~~~F~~i~~K~~~~~n~~--------QKEK~E~DLKkEIKKLQ----R~RdQIK~W~~~~diKdk 73 (233)
T PF04065_consen 6 LQQEIDRTLKKVQEGVEEFDEIYEKVESATNQN--------QKEKLEADLKKEIKKLQ----RLRDQIKTWLSSNDIKDK 73 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcc--------hHHHHHHHHHHHHHHHH----HHHHHHHHHccCcccccH
Confidence 489999999999999999999999999865332 112221 4556666654 344445455432 11 33
Q ss_pred HHHHHHHHHHHHHH
Q 005704 164 RRLEERNRQLEQQM 177 (682)
Q Consensus 164 ~~Lkerl~~lE~~~ 177 (682)
..|.+--+..|..|
T Consensus 74 ~~L~e~Rk~IE~~M 87 (233)
T PF04065_consen 74 KKLLENRKLIEEQM 87 (233)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444333344444
No 178
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=88.82 E-value=36 Score=36.30 Aligned_cols=33 Identities=12% Similarity=0.287 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 199 TLEILQEREQALQDQLRQAKDSVATMQKLHELA 231 (682)
Q Consensus 199 k~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~ 231 (682)
..+.|.++-..|..++.+...++.+++...+..
T Consensus 35 ~~~~~~ekRdeln~kvrE~~e~~~elr~~rdei 67 (294)
T COG1340 35 EASELAEKRDELNAKVRELREKAQELREERDEI 67 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555544433
No 179
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=88.63 E-value=42 Score=36.87 Aligned_cols=62 Identities=18% Similarity=0.209 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 213 QLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAN 285 (682)
Q Consensus 213 ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~ 285 (682)
++++...+|..+++.++..+.+.... ..|-+.+..+|+.+++.-..++.+..+++..+.++.
T Consensus 75 qlddi~~qlr~~rtel~~a~~~k~~~-----------e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAq 136 (499)
T COG4372 75 QLDDIRPQLRALRTELGTAQGEKRAA-----------ETEREAARSELQKARQEREAVRQELAAARQNLAKAQ 136 (499)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555544332222 223344444555555444555555555555554443
No 180
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=88.59 E-value=61 Score=38.65 Aligned_cols=49 Identities=24% Similarity=0.210 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHhhh
Q 005704 505 MLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQD 560 (682)
Q Consensus 505 iL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRylqs 560 (682)
-+.-..++..++.....+++.++.........++.|+..|+. |.+++.+
T Consensus 574 ~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~-------kle~~k~ 622 (698)
T KOG0978|consen 574 ELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKR-------KLERLKK 622 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhcc
Confidence 445556777777778888888888888888888888888887 8777644
No 181
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=88.58 E-value=62 Score=38.74 Aligned_cols=39 Identities=23% Similarity=0.232 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHhhhhhhH------HhhHHHHHHHHHHHHHHHHhhh
Q 005704 118 PYPALASIAEQDLKLSELE------SENRKMKIELEEYRTEATHLKN 158 (682)
Q Consensus 118 P~PlLe~s~~~~~~~~~le------~E~~kL~~el~~l~~el~~lkn 158 (682)
|-|.|.-.++.+.+ ++. .....|+..+.-|+.||++.+.
T Consensus 456 ~~~~L~e~IeKLk~--E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~~ 500 (762)
T PLN03229 456 SELALNEMIEKLKK--EIDLEYTEAVIAMGLQERLENLREEFSKANS 500 (762)
T ss_pred CChHHHHHHHHHHH--HHHHHHHHhhhhhhHHHHHHHHHHHHHhccc
Confidence 56777666654332 111 1224566777777777777654
No 182
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=88.47 E-value=10 Score=42.63 Aligned_cols=222 Identities=14% Similarity=0.188 Sum_probs=49.6
Q ss_pred HHHhhHHHHHHhHHHHHHHhhhh-hhhHHHHHHHhhh---hccCCCCHHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHH
Q 005704 76 KLSLFNSLLKGYQEEVDNLTKRA-KFGENAFLNIYQK---LYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRT 151 (682)
Q Consensus 76 kl~~~~~LLK~yQ~EID~LTkRs-K~aE~aFl~~Y~~---L~eaPDP~PlLe~s~~~~~~~~~le~E~~kL~~el~~l~~ 151 (682)
-...+...++..+.+||.....- ...-....++.+. ..-+|.|.+..............--.|+..|+.++.-++.
T Consensus 86 ~~~~l~~~i~~lk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Ev~~LRreLavLRQ 165 (424)
T PF03915_consen 86 GIGGLSEEIEELKQELDEQQETILQRVKERQQSAAKPVARPAAAPPPSSAPSSSSSPQSTSKSDLKEVQSLRRELAVLRQ 165 (424)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCcccccccCcCCCCcchHHHHHHHHHHHHHHHH
Confidence 45555556666666666665554 3333333343333 2334443332222111110000112255555555555544
Q ss_pred HHHHhhhhH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 152 EATHLKNQQ-STIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHEL 230 (682)
Q Consensus 152 el~~lknq~-~~~~~Lkerl~~lE~~~e~~~~~~~~~~E~el~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~ 230 (682)
-....+..- .++..+++++..+.... +...-..-++-++.-+.++...-..|-.++.+++..+++|+.-.
T Consensus 166 l~~~~~~~~~~~i~~i~~ki~~~k~~s-------~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV-- 236 (424)
T PF03915_consen 166 LYSEFQSEVKESISSIREKIKKVKSAS-------TNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDV-- 236 (424)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-------ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 333333221 25566666554443211 11111112233333334444444444444444444444444321
Q ss_pred HHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHhhhhhhccCCCCCcCchhhh
Q 005704 231 AQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLR--------SQLQSANDEAGSRNSDTLDSNSYL 302 (682)
Q Consensus 231 ~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr--------~eL~~a~s~~~~~~~~~~~~~s~l 302 (682)
-.-+++. .-..++-+..|+.++...+..++..+..++ .||...-..- ..
T Consensus 237 -----~~RgvRp------~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eEQ------------qf 293 (424)
T PF03915_consen 237 -----VQRGVRP------SPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKVCEEQ------------QF 293 (424)
T ss_dssp -----HHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HH
T ss_pred -----HHcCCcC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH------------HH
Confidence 1112221 123455555566665555555555544433 2333221111 11
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 303 ENSLSAKEKIISELNSELHNIETALSNERE 332 (682)
Q Consensus 303 e~el~~ke~ei~~L~~e~~~Le~~L~~~r~ 332 (682)
+.--+.-+.+|.+++..+...+.....
T Consensus 294 ---L~~QedL~~DL~eDl~k~~etf~lveq 320 (424)
T PF03915_consen 294 ---LKLQEDLLSDLKEDLKKASETFALVEQ 320 (424)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222233477777777777777765544
No 183
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=88.46 E-value=74 Score=39.44 Aligned_cols=63 Identities=17% Similarity=0.249 Sum_probs=49.4
Q ss_pred chHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005704 401 SKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY 464 (682)
Q Consensus 401 ~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~ 464 (682)
.+|+. +.+++..++..+..++.++..+..+...+...+..+...++++......|+.+.....
T Consensus 395 ~~ld~-~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~ 457 (1141)
T KOG0018|consen 395 DTLDH-ELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAE 457 (1141)
T ss_pred HHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhh
Confidence 35555 6778888888888888888888888888888888888888888888888877765544
No 184
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=88.13 E-value=50 Score=37.15 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=20.1
Q ss_pred CCCCHHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHhh
Q 005704 115 APDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLK 157 (682)
Q Consensus 115 aPDP~PlLe~s~~~~~~~~~le~E~~kL~~el~~l~~el~~lk 157 (682)
.||+--.+|...-.-.-+ .|..-+.+|+.++.+.+..+.+|.
T Consensus 296 ~~d~eqs~Eslqpleedm-aLNEvL~kLk~tn~kQq~~IqdLq 337 (527)
T PF15066_consen 296 TPDTEQSFESLQPLEEDM-ALNEVLQKLKHTNRKQQNRIQDLQ 337 (527)
T ss_pred CCCHHhhhhccCCcHHHH-HHHHHHHHHHhhhHHHHHHHHHhh
Confidence 677655554422111000 244455666666665555555544
No 185
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=88.08 E-value=69 Score=38.68 Aligned_cols=81 Identities=21% Similarity=0.289 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 200 LEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRS 279 (682)
Q Consensus 200 ~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~ 279 (682)
+..+.++...|+++++.+..+-+.|..+.+..=..+ ..+... -..||.+| ..+|++.+.++..+..++++++.
T Consensus 588 ~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l---~~~~P~---LS~AEr~~-~~EL~~~~~~l~~l~~si~~lk~ 660 (717)
T PF10168_consen 588 RKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLL---NSQLPV---LSEAEREF-KKELERMKDQLQDLKASIEQLKK 660 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccCCC---CCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555544444221111 111110 11233222 23355555555556666666666
Q ss_pred HHHhhhhh
Q 005704 280 QLQSANDE 287 (682)
Q Consensus 280 eL~~a~s~ 287 (682)
.++.....
T Consensus 661 k~~~Q~~~ 668 (717)
T PF10168_consen 661 KLDYQQRQ 668 (717)
T ss_pred HHHHHHHH
Confidence 65554433
No 186
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=87.94 E-value=21 Score=35.23 Aligned_cols=55 Identities=24% Similarity=0.372 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHhhh
Q 005704 506 LKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQD 560 (682)
Q Consensus 506 L~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRylqs 560 (682)
+.-+......+..+..++...+......+..++.++..++.+.-.|-+++..+++
T Consensus 132 l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (191)
T PF04156_consen 132 LDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQE 186 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555666666666666677777777777777766666667766554
No 187
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=87.54 E-value=39 Score=35.15 Aligned_cols=92 Identities=17% Similarity=0.313 Sum_probs=52.3
Q ss_pred HHHHHhhhhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccc
Q 005704 406 LLLDKNRKMEHELTQLKVKL-----SEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLS 480 (682)
Q Consensus 406 lLl~kNrkL~~eLt~LR~~~-----~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~ 480 (682)
-|++|-|-|..++..|-.+. ..|..++..-...-..+...-+++-.-+..|-+|++
T Consensus 214 ~LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVE------------------- 274 (330)
T KOG2991|consen 214 MLMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVE------------------- 274 (330)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHh-------------------
Confidence 58999999999888886543 233333333333333333333333333444444433
Q ss_pred cccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 481 EAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGV 536 (682)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~ 536 (682)
+.++-+-|+..+...-|.+|..|+..+.++.+-+..
T Consensus 275 --------------------gmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav~d 310 (330)
T KOG2991|consen 275 --------------------GMQSTILILQQKLKETRKEIQRLKKGLEQVSQAVGD 310 (330)
T ss_pred --------------------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333445677777777777777777776666655443
No 188
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=87.45 E-value=21 Score=41.11 Aligned_cols=59 Identities=31% Similarity=0.446 Sum_probs=41.1
Q ss_pred hHHHHHHHhhhhhhhHHHHHHHhhhhccCCCCHHHHHHHHHHHhhhh-hhHHhhHHHHHHHHHHHHHHHHhh
Q 005704 87 YQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLS-ELESENRKMKIELEEYRTEATHLK 157 (682)
Q Consensus 87 yQ~EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~~-~le~E~~kL~~el~~l~~el~~lk 157 (682)
-|+|||.+-|.-+..=-.|=++|.++.++--| .+..|++ +|..|++||+ +|+..+..|.
T Consensus 6 Lq~eIdr~lkKv~Egve~Fd~i~ek~~~~~n~--------sqkeK~e~DLKkEIKKLQ----RlRdQIKtW~ 65 (575)
T KOG2150|consen 6 LQQEIDRCLKKVDEGVEIFDEIYEKLHSANNV--------SQKEKLESDLKKEIKKLQ----RLRDQIKTWQ 65 (575)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCh--------hHHHHHHHHHHHHHHHHH----HHHHHHHhhh
Confidence 48999999999999999999999999987622 2233332 4666666654 3445555554
No 189
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=87.09 E-value=21 Score=34.03 Aligned_cols=81 Identities=21% Similarity=0.320 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 005704 249 KQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALS 328 (682)
Q Consensus 249 ~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~ 328 (682)
..++++-+..++++.+.+++.+++++..+......+... +...........+++.++...+.
T Consensus 64 l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~------------------~~~~~~~~k~~kee~~klk~~~~ 125 (151)
T PF11559_consen 64 LRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQ------------------LKSLEAKLKQEKEELQKLKNQLQ 125 (151)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666665555554433322 33333445666677777777777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005704 329 NEREQHMNEIKKLNALLIE 347 (682)
Q Consensus 329 ~~r~~~~~~~~~L~~ql~~ 347 (682)
..+.++..++.+-+.++..
T Consensus 126 ~~~tq~~~e~rkke~E~~k 144 (151)
T PF11559_consen 126 QRKTQYEHELRKKEREIEK 144 (151)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777666554443333
No 190
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.83 E-value=80 Score=38.04 Aligned_cols=30 Identities=27% Similarity=0.242 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 517 RARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 517 r~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
++.+.++--.+..+.+.+.+|+.-+..|..
T Consensus 910 kqeqee~~v~~~~~~~~i~alk~~l~dL~q 939 (970)
T KOG0946|consen 910 KQEQEELLVLLADQKEKIQALKEALEDLNQ 939 (970)
T ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHhCC
Confidence 456666667777777777777776666665
No 191
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=86.82 E-value=32 Score=33.48 Aligned_cols=121 Identities=21% Similarity=0.326 Sum_probs=60.2
Q ss_pred HhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 005704 137 SENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQL-------EQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQA 209 (682)
Q Consensus 137 ~E~~kL~~el~~l~~el~~lknq~~~~~~Lkerl~~l-------E~~~e~~~~~~~~~~E~el~~~~eek~~~~~ere~~ 209 (682)
.|...++.++.+++.++..+- ..+++|+.+.+.. .+.+..-.+..+.+.-.+. ..++-+...+.++++.
T Consensus 27 ~E~~~l~~EL~evk~~v~~~I---~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A-~~lQ~~L~~~re~E~q 102 (159)
T PF05384_consen 27 QEYERLRKELEEVKEEVSEVI---EEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEA-HELQVRLAMLREREKQ 102 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 355555555555555555532 1344444443333 3333222222222111111 1233444556777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 210 LQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQR 272 (682)
Q Consensus 210 L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~ 272 (682)
|..+-.++++.++.|...++.++.-.. ...-=++-|..||......+.+++.
T Consensus 103 Lr~rRD~LErrl~~l~~tierAE~l~s-----------qi~vvl~yL~~dl~~v~~~~e~~~~ 154 (159)
T PF05384_consen 103 LRERRDELERRLRNLEETIERAENLVS-----------QIGVVLNYLSGDLQQVSEQIEDAQQ 154 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 777777777777777777775542222 2223345566666655555555443
No 192
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=86.77 E-value=4.8 Score=40.27 Aligned_cols=109 Identities=19% Similarity=0.265 Sum_probs=37.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccc
Q 005704 407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTE 486 (682)
Q Consensus 407 Ll~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (682)
+-.+--+++.||+.+.....++..++..+...+..+..++......+..|+..+..+....
T Consensus 72 le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~------------------- 132 (194)
T PF08614_consen 72 LEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKI------------------- 132 (194)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHHHHHH-------------------
T ss_pred cccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 3344456788888888888888888888887777777777777777777776666554321
Q ss_pred cccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHH
Q 005704 487 LSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGK 554 (682)
Q Consensus 487 ~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEk 554 (682)
.-+.........-|.-|-+|+..++-+.+.+...+..|+.+|-.|-++
T Consensus 133 --------------------~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~R 180 (194)
T PF08614_consen 133 --------------------KDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVER 180 (194)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222223344445555555555556666666666667777777664
No 193
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=86.43 E-value=28 Score=39.49 Aligned_cols=128 Identities=16% Similarity=0.197 Sum_probs=64.2
Q ss_pred hHHhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005704 135 LESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQL 214 (682)
Q Consensus 135 le~E~~kL~~el~~l~~el~~lknq~~~~~~Lkerl~~lE~~~e~~~~~~~~~~E~el~~~~eek~~~~~ere~~L~~ql 214 (682)
+..++..+..++..+..+..+|.+|.++ ++.+++-+.-+.+ .+++-.-.+..+...++..+
T Consensus 217 ~~eel~~kt~el~~q~Ee~skLlsql~d---~qkk~k~~~~Eke----------------el~~~Lq~~~da~~ql~aE~ 277 (596)
T KOG4360|consen 217 GQEELQSKTKELSRQQEENSKLLSQLVD---LQKKIKYLRHEKE----------------ELDEHLQAYKDAQRQLTAEL 277 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHH----------------HHHHHHHHHHhhHHHHHHHH
Confidence 3445566666666667777777666665 3333332211111 12222223344555555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 215 RQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNL-LMDEVERAQTRLLSLQREKDLLRSQL 281 (682)
Q Consensus 215 ~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~-l~~DLEra~~R~~~LE~e~E~Lr~eL 281 (682)
.+++.+-.+.-.-+..+|.+|..++....-......+-.-. .=.-+..+..++.-.++.+-+|+++.
T Consensus 278 ~EleDkyAE~m~~~~EaeeELk~lrs~~~p~~~s~~~~~~~~~fp~~~~aae~i~lt~r~~~qldee~ 345 (596)
T KOG4360|consen 278 EELEDKYAECMQMLHEAEEELKCLRSCDAPKLISQEALSHGHHFPQLSLAAEKIELTMRKNLQLDEEA 345 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHhhhhCChhhHHHHHHHHhhhhhhcccccc
Confidence 66666666666666667777777766543221111111000 11223445555666677777776653
No 194
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=86.14 E-value=51 Score=35.17 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005704 251 SEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSA 284 (682)
Q Consensus 251 aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a 284 (682)
.++..+.......+.++..|-.....|++.....
T Consensus 69 eev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~ 102 (294)
T COG1340 69 EEVQELKEKRDEINAKLQELRKEYRELKEKRNEF 102 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3444444444444555555555555555554433
No 195
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=85.82 E-value=12 Score=43.38 Aligned_cols=97 Identities=19% Similarity=0.260 Sum_probs=73.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCcccccccccccccccc
Q 005704 414 MEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADK 493 (682)
Q Consensus 414 L~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (682)
..-+++.....+..+...++.++.+.+.|..++.+++..|.+|++.|..+.....
T Consensus 413 e~~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~------------------------- 467 (652)
T COG2433 413 ERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR------------------------- 467 (652)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------
Confidence 4456688888888899999999999999999999999999999999998875321
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 494 KHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 494 ~~~~~~~~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
.. . -+.....-...+|..|+.+|......+..|..+++.|+.
T Consensus 468 -------~~---~-~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k 509 (652)
T COG2433 468 -------DK---V-RKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRK 509 (652)
T ss_pred -------HH---H-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 001111224567888999999999999999998888885
No 196
>PRK10884 SH3 domain-containing protein; Provisional
Probab=85.38 E-value=8.5 Score=39.06 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 260 VERAQTRLLSLQREKDLLRSQLQSAN 285 (682)
Q Consensus 260 LEra~~R~~~LE~e~E~Lr~eL~~a~ 285 (682)
+....+.+.+|+.+|.+|+.+|+.++
T Consensus 127 ~~~~~~~~~~L~~~n~~L~~~l~~~~ 152 (206)
T PRK10884 127 VAQSDSVINGLKEENQKLKNQLIVAQ 152 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445556666666666555433
No 197
>PRK10884 SH3 domain-containing protein; Provisional
Probab=84.68 E-value=13 Score=37.78 Aligned_cols=14 Identities=36% Similarity=0.437 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHH
Q 005704 164 RRLEERNRQLEQQM 177 (682)
Q Consensus 164 ~~Lkerl~~lE~~~ 177 (682)
..+..++.+++++.
T Consensus 89 p~~~~rlp~le~el 102 (206)
T PRK10884 89 PSLRTRVPDLENQV 102 (206)
T ss_pred ccHHHHHHHHHHHH
Confidence 44666666666665
No 198
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=84.42 E-value=28 Score=35.94 Aligned_cols=97 Identities=18% Similarity=0.235 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 263 AQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLN 342 (682)
Q Consensus 263 a~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~ 342 (682)
++.++.++++-...|..+++...... .. +..+..++..|..|...+...|... ...|..|+
T Consensus 6 ir~K~~~lek~k~~i~~e~~~~e~ee------------~~---L~e~~kE~~~L~~Er~~h~eeLrqI----~~DIn~lE 66 (230)
T PF10146_consen 6 IRNKTLELEKLKNEILQEVESLENEE------------KC---LEEYRKEMEELLQERMAHVEELRQI----NQDINTLE 66 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------------HH---HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 34455556655555555555433332 22 5555666777777776666554332 23345566
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh
Q 005704 343 ALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQA 380 (682)
Q Consensus 343 ~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~ 380 (682)
..+.+........+.....+ +.+|.-+|.+++.++.
T Consensus 67 ~iIkqa~~er~~~~~~i~r~--~eey~~Lk~~in~~R~ 102 (230)
T PF10146_consen 67 NIIKQAESERNKRQEKIQRL--YEEYKPLKDEINELRK 102 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 66666666666666666666 6789999999999874
No 199
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=84.12 E-value=78 Score=35.53 Aligned_cols=57 Identities=19% Similarity=0.232 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 216 QAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQ 280 (682)
Q Consensus 216 ~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~e 280 (682)
.+......|...++..+.++..+ .....++..|..|++.++.-...+-.+.++.+-+
T Consensus 315 ~~~~~~~~l~~~l~~~~~~~~~l--------~~~~~~~~~L~r~~~~~~~~y~~ll~r~~e~~l~ 371 (444)
T TIGR03017 315 ILKQREAELREALENQKAKVLEL--------NRQRDEMSVLQRDVENAQRAYDAAMQRYTQTRIE 371 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555544443333322 2235678888999988888888887777777644
No 200
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=83.53 E-value=83 Score=35.41 Aligned_cols=153 Identities=16% Similarity=0.190 Sum_probs=86.7
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--------hHH-HHhhHHHHHHHHH
Q 005704 188 KQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQS--------DEE-RVAKQSEVNLLMD 258 (682)
Q Consensus 188 ~E~el~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~--------~ee-~~a~~aEle~l~~ 258 (682)
.|+.+..++++.....-.=..-+-++-.+++.+--+|-+.+...+.-+.+.+... +.. ..+..+||..|..
T Consensus 320 ~Ek~c~eEL~~al~~A~~GhaR~lEqYadLqEk~~~Ll~~Hr~i~egI~dVKkaAakAg~kG~~~rF~~slaaEiSalr~ 399 (488)
T PF06548_consen 320 SEKKCTEELDDALQRAMEGHARMLEQYADLQEKHNDLLARHRRIMEGIEDVKKAAAKAGVKGAESRFINSLAAEISALRA 399 (488)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 3555555555554332222333445667777777778888777776666543321 111 3345799999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 259 EVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSL--SAKEKIISELNSELHNIETALSNEREQHMN 336 (682)
Q Consensus 259 DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el--~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~ 336 (682)
+-|+.+ .-|-.+|..|+.||-..-...++... . ...-.|++- ..-+......+.++..+-..++.++.+|..
T Consensus 400 erEkEr---~~l~~eNk~L~~QLrDTAEAVqAagE--l-lvrl~eaeea~~~a~~r~~~~eqe~ek~~kqiekLK~kh~~ 473 (488)
T PF06548_consen 400 EREKER---RFLKDENKGLQIQLRDTAEAVQAAGE--L-LVRLREAEEAASVAQERAMDAEQENEKAKKQIEKLKRKHKM 473 (488)
T ss_pred HHHHHH---HHHHHHhHHHHHHHHhHHHHHHHHHH--H-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 866643 45677899999998776655543220 0 000011111 111223345666777777777777777777
Q ss_pred HHHHHHHHHH
Q 005704 337 EIKKLNALLI 346 (682)
Q Consensus 337 ~~~~L~~ql~ 346 (682)
+|..|++.+.
T Consensus 474 Ei~t~kq~la 483 (488)
T PF06548_consen 474 EISTMKQYLA 483 (488)
T ss_pred HHHHHHHHHh
Confidence 7666655443
No 201
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=83.12 E-value=33 Score=31.07 Aligned_cols=43 Identities=12% Similarity=0.398 Sum_probs=33.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEK 543 (682)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~ 543 (682)
+-..++|.|....+-...++..|+..+.....++..++..+..
T Consensus 64 ~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 64 DKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888888888888888777777776544
No 202
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.92 E-value=67 Score=33.86 Aligned_cols=77 Identities=16% Similarity=0.316 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005704 204 QEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQS 283 (682)
Q Consensus 204 ~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~ 283 (682)
......++..+..++.+|..|....+.++.++.+.+.+.+ ...++|..+..+++..+.++ ..|.+-|..++-.
T Consensus 37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~----~~~~eik~l~~eI~~~~~~I---~~r~~~l~~raRA 109 (265)
T COG3883 37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEID----QSKAEIKKLQKEIAELKENI---VERQELLKKRARA 109 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3334444455555555555555555555544444433222 11233444444444443333 2345566666555
Q ss_pred hhhh
Q 005704 284 ANDE 287 (682)
Q Consensus 284 a~s~ 287 (682)
....
T Consensus 110 mq~n 113 (265)
T COG3883 110 MQVN 113 (265)
T ss_pred HHHc
Confidence 5443
No 203
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=82.80 E-value=63 Score=33.50 Aligned_cols=71 Identities=13% Similarity=0.201 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhcccc
Q 005704 313 ISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYN 384 (682)
Q Consensus 313 i~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~iEf~ 384 (682)
+..|.....++...+..++......+..|...++........-....+.. ...++..||..|.....--+.
T Consensus 152 ~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~-v~~Ei~~lk~~l~~e~~~R~~ 222 (247)
T PF06705_consen 152 LKRLEEEENRLQEKIEKEKNTRESKLSELRSELEEVKRRREKGDEQFQNF-VLEEIAALKNALALESQEREQ 222 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 56678888888888888887777777777766666544333333333321 023455555555555544443
No 204
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=82.58 E-value=23 Score=38.75 Aligned_cols=94 Identities=22% Similarity=0.250 Sum_probs=44.9
Q ss_pred hhccCCCCHHHHHHHHHHHh-hhhhhHHhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005704 111 KLYEAPDPYPALASIAEQDL-KLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQ 189 (682)
Q Consensus 111 ~L~eaPDP~PlLe~s~~~~~-~~~~le~E~~kL~~el~~l~~el~~lknq~~~~~~Lkerl~~lE~~~e~~~~~~~~~~E 189 (682)
.|..+|+|.+++...++... .+..+...+..|..+++.|+.+..++..|...+-.-|+ ++|..+ -
T Consensus 117 ~L~~~~~p~e~i~el~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~---~~E~~L-----------~ 182 (342)
T PF06632_consen 117 KLKQVDNPAEVIRELFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKE---EHEEDL-----------Y 182 (342)
T ss_dssp E-EE-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH-----------H
T ss_pred ECCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH-----------H
Confidence 56678888875544444332 22235556666666666666666655544433222222 111111 2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 190 RGLAEENQKTLEILQEREQALQDQLRQAKDSVA 222 (682)
Q Consensus 190 ~el~~~~eek~~~~~ere~~L~~ql~~ae~~l~ 222 (682)
..+...+.+|+ .|.+.|++.|..++..-+
T Consensus 183 ~KF~~vLNeKK----~KIR~lq~~L~~~~~~~~ 211 (342)
T PF06632_consen 183 AKFVLVLNEKK----AKIRELQRLLASAKEEEK 211 (342)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHH----HHHHHHHHHHHHhhcccc
Confidence 23345666663 345556666666554433
No 205
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.47 E-value=91 Score=35.08 Aligned_cols=95 Identities=21% Similarity=0.340 Sum_probs=65.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccc
Q 005704 407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTE 486 (682)
Q Consensus 407 Ll~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (682)
|+.+-..|-.++.-...+-.+ -.+++.++.++..+..+++.-..++.+|-+.|+++-.
T Consensus 323 ll~kkl~Lr~~l~~~e~e~~e-~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~--------------------- 380 (521)
T KOG1937|consen 323 LLQKKLQLREELKNLETEDEE-IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPD--------------------- 380 (521)
T ss_pred HHHHHHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCc---------------------
Confidence 444445555554444444444 4667777778888888888888888888888876632
Q ss_pred cccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 487 LSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 487 ~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
--||--+-+|+.|+-.-+|++.+.|.....+-..|+.
T Consensus 381 -----------------------dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqk 417 (521)
T KOG1937|consen 381 -----------------------DVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQK 417 (521)
T ss_pred -----------------------hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 1236677788888888888888888777777777766
No 206
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=82.15 E-value=30 Score=36.44 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=16.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 005704 403 MESLLLDKNRKMEHELTQLKVKLSEKTSLLE 433 (682)
Q Consensus 403 LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~ 433 (682)
+-+-|.+|.+.+|+=-.+++.|+-.|+.-+.
T Consensus 136 mrssL~ekDkGiQKYFvDINiQN~KLEsLLq 166 (305)
T PF15290_consen 136 MRSSLAEKDKGIQKYFVDINIQNKKLESLLQ 166 (305)
T ss_pred HHhhhchhhhhHHHHHhhhhhhHhHHHHHHH
Confidence 3344566666666555555555544444433
No 207
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=81.63 E-value=68 Score=33.08 Aligned_cols=173 Identities=16% Similarity=0.241 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhccccCccchhhhhhcchhhhchHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 005704 349 EAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEK 428 (682)
Q Consensus 349 ~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~iEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~LR~~~~~l 428 (682)
......+++.+...| .....++++|.-++.- ........ .+.....|+..|. ...++|..+...+...
T Consensus 37 ~~~~~~~~~~i~~aP--~~~~~l~~~l~~l~~~--~~~~~~~~----~~~s~~eLeq~l~----~~~~~L~~~q~~l~~~ 104 (240)
T PF12795_consen 37 KKRAAEYQKQIDQAP--KEIRELQKELEALKSQ--DAPSKEIL----ANLSLEELEQRLS----QEQAQLQELQEQLQQE 104 (240)
T ss_pred HHHHHHHHHHHHHhH--HHHHHHHHHHHhhhcc--ccccccCc----ccCCHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 334556666666663 7788889999888754 11000000 1111234455444 4556667888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCcccccccccc----c-cccccC-CCCCCCcc
Q 005704 429 TSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTEL----S-EKADKK-HTYPDQDQ 502 (682)
Q Consensus 429 ~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~-~~~~~~~~ 502 (682)
...+..++.........+.+....+..++.+|........ .+++.+....+ . -..-+. ---.-.+.
T Consensus 105 ~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~--------~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~ 176 (240)
T PF12795_consen 105 NSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGE--------SPLSEAQRWLLQAELAALEAQIEMLEQELLSN 176 (240)
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCc--------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 8888888888888888888888888888888764322110 01000000000 0 000000 00001256
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 503 SSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAEL 541 (682)
Q Consensus 503 ~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei 541 (682)
+.+..+.+.|||-+..++.-++..+..++..++.+|..-
T Consensus 177 ~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R~~e 215 (240)
T PF12795_consen 177 NNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKRRQE 215 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777788888888888888888888887777766543
No 208
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=81.36 E-value=1.6e+02 Score=37.24 Aligned_cols=25 Identities=4% Similarity=0.142 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 005704 259 EVERAQTRLLSLQREKDLLRSQLQS 283 (682)
Q Consensus 259 DLEra~~R~~~LE~e~E~Lr~eL~~ 283 (682)
+++..+.++..+......++..+..
T Consensus 778 ~~~~l~~~i~~~~~~~~~~~~~~~~ 802 (1047)
T PRK10246 778 TLTQLEQLKQNLENQRQQAQTLVTQ 802 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555554443
No 209
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=81.23 E-value=30 Score=38.17 Aligned_cols=63 Identities=10% Similarity=0.244 Sum_probs=36.3
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005704 402 KMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS 465 (682)
Q Consensus 402 ~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~ 465 (682)
+||. +-.|.+-+.+++..+..+......++...+.....+..-+.+......++-..|+.+..
T Consensus 253 ~lek-I~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~ 315 (359)
T PF10498_consen 253 TLEK-IESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQ 315 (359)
T ss_pred HHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 55566666666666666555566666666666666666555555555555555555543
No 210
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=80.91 E-value=86 Score=33.74 Aligned_cols=192 Identities=19% Similarity=0.187 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 137 SENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQ 216 (682)
Q Consensus 137 ~E~~kL~~el~~l~~el~~lknq~~~~~~Lkerl~~lE~~~e~~~~~~~~~~E~el~~~~eek~~~~~ere~~L~~ql~~ 216 (682)
..+.+|++.|-+|..++..+-.||.+ ..+-+....++.+ .-.....++-....-.............+...++...
T Consensus 130 ~~n~klre~NieL~eKlkeL~eQy~~---re~hidk~~e~ke-l~~ql~~aKlq~~~~l~a~~ee~~~~e~~~glEKd~l 205 (391)
T KOG1850|consen 130 SKNDKLREDNIELSEKLKELGEQYEE---REKHIDKQIQKKE-LWEQLGKAKLQEIKLLTAKLEEASIQEKKSGLEKDEL 205 (391)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchHH--HHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCC
Q 005704 217 AKDSVATMQKLHELAQSQLFEVRAQSDEE--RVAKQSEV-NLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNS 293 (682)
Q Consensus 217 ae~~l~eL~~~le~~Q~eL~~l~~k~~ee--~~a~~aEl-e~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~ 293 (682)
++..++++...--..+.+++.--.+|++= +-++..|+ .-...++|+.+.++..+|++--..|..-+.++...-
T Consensus 206 ak~~~e~~~~~e~qlK~ql~lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL---- 281 (391)
T KOG1850|consen 206 AKIMLEEMKQVEGQLKEQLALYMAKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVL---- 281 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH----
Q ss_pred CCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 294 DTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNA 343 (682)
Q Consensus 294 ~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ 343 (682)
.+-.+-...+..+..|.-.+++|+--+..++.....-...++.
T Consensus 282 -------~la~ekt~~~k~~~~lq~kiq~LekLcRALq~ernel~~~~~~ 324 (391)
T KOG1850|consen 282 -------QLAEEKTVRDKEYETLQKKIQRLEKLCRALQTERNELNKKLED 324 (391)
T ss_pred -------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
No 211
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=80.67 E-value=1.4e+02 Score=36.13 Aligned_cols=32 Identities=13% Similarity=0.063 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 250 QSEVNLLMDEVERAQTRLLSLQREKDLLRSQL 281 (682)
Q Consensus 250 ~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL 281 (682)
..++..|..|.+.++.-...+-.+.++.+-..
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~ 406 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYESYLTNYRQAASRQ 406 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56777788888887777777777777766544
No 212
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=79.92 E-value=1.3e+02 Score=35.25 Aligned_cols=10 Identities=40% Similarity=0.604 Sum_probs=7.4
Q ss_pred hhhccCCCCH
Q 005704 110 QKLYEAPDPY 119 (682)
Q Consensus 110 ~~L~eaPDP~ 119 (682)
-.|+-+|||.
T Consensus 73 ~LlsqiP~~~ 82 (861)
T KOG1899|consen 73 GLLSQIPDPQ 82 (861)
T ss_pred cccccCCCch
Confidence 3577899994
No 213
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=79.91 E-value=22 Score=31.60 Aligned_cols=49 Identities=37% Similarity=0.438 Sum_probs=33.9
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 005704 134 ELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKE 183 (682)
Q Consensus 134 ~le~E~~kL~~el~~l~~el~~lknq~~~~~~Lkerl~~lE~~~e~~~~~ 183 (682)
.+..++.+|+.+++.|+..+..+...+.+-=.+++ +..||+.++..+..
T Consensus 16 ~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~e-L~~LE~~Le~aL~~ 64 (100)
T PF01486_consen 16 ELQQEIAKLRKENESLQKELRHLMGEDLESLSLKE-LQQLEQQLESALKR 64 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccccchHH-HHHHHHhhhhhHHH
Confidence 35668999999999999999888876543223333 56677777555543
No 214
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=79.79 E-value=1.1e+02 Score=34.64 Aligned_cols=95 Identities=16% Similarity=0.200 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 005704 250 QSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSN 329 (682)
Q Consensus 250 ~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~ 329 (682)
.+.+.-...++++|..|+.+....+-..|.+ ... +|.... ....-..|..|+.+...++..|..
T Consensus 241 ~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~-------~gv-----lDP~~~----a~~~~~lI~~Le~qLa~~~aeL~~ 304 (434)
T PRK15178 241 KERILWLENDVKSAQENLGAARLELLKIQHI-------QKD-----IDPKET----ITAIYQLIAGFETQLAEAKAEYAQ 304 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCC-----cChHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777777777766666666543 110 011101 111123378888888888888887
Q ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005704 330 EREQ---HMNEIKKLNALLIEKEAALEDMKKELQ 360 (682)
Q Consensus 330 ~r~~---~~~~~~~L~~ql~~~~~~~~~le~~l~ 360 (682)
++.. .+-++..|+.++..++.+++....++.
T Consensus 305 L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~ 338 (434)
T PRK15178 305 LMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLS 338 (434)
T ss_pred HHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhh
Confidence 7654 223566666666666666666555553
No 215
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=79.71 E-value=35 Score=36.88 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=20.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 246 RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQ 282 (682)
Q Consensus 246 ~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~ 282 (682)
......|+..+..+-+.....+..||.+.+.|..++.
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~ 81 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELE 81 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566666655566666666666666655554
No 216
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=79.53 E-value=53 Score=30.48 Aligned_cols=12 Identities=42% Similarity=0.673 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 005704 368 VDDLRKKVKILQ 379 (682)
Q Consensus 368 yeelK~EL~~Lk 379 (682)
+++|+..+.-||
T Consensus 98 veEL~~Dv~DlK 109 (120)
T PF12325_consen 98 VEELRADVQDLK 109 (120)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 217
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=79.51 E-value=58 Score=30.99 Aligned_cols=42 Identities=24% Similarity=0.337 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH
Q 005704 204 QEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEE 245 (682)
Q Consensus 204 ~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee 245 (682)
+.++..++.++..+...++..+..+...+..+...++++..+
T Consensus 93 ~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e 134 (151)
T PF11559_consen 93 EEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHE 134 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555554554444433
No 218
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=78.86 E-value=60 Score=36.27 Aligned_cols=28 Identities=25% Similarity=0.358 Sum_probs=18.5
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHhhhhhHhhHHHHHH
Q 005704 523 TEEEVR----QLKEKIGVLTAELEKTKADNVQLYGKIRF 557 (682)
Q Consensus 523 LE~el~----~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRy 557 (682)
||++++ -+..+|..|++++..+.. |+.|
T Consensus 263 LEeqlNd~~elHq~Ei~~LKqeLa~~EE-------K~~Y 294 (395)
T PF10267_consen 263 LEEQLNDLTELHQNEIYNLKQELASMEE-------KMAY 294 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHH
Confidence 555544 445667777777777766 8887
No 219
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=78.51 E-value=1e+02 Score=33.32 Aligned_cols=39 Identities=26% Similarity=0.490 Sum_probs=30.7
Q ss_pred hcCcchhHHHhhhhhhhcchhhHHHHHHHHHH------HHHHHHHHHHH
Q 005704 615 ELGIRDRITLSSGRFLLGNKYARTFAFFYTIL------LHVLVFTCLYR 657 (682)
Q Consensus 615 ~l~~~er~~l~~~r~vl~nr~~R~~f~~Y~~~------LH~lv~~~ly~ 657 (682)
.++..|+- ||+|+.||.-=.+.|-||++ +|--|.-|||-
T Consensus 349 ~~s~~E~~----grlviKTK~~g~ipf~ycL~ii~kGpf~~hVigvlYP 393 (401)
T PF06785_consen 349 LLSRQERS----GRLVIKTKNGGNIPFYYCLGIIPKGPFRNHVIGVLYP 393 (401)
T ss_pred hhhhhhhh----ceEEEEecCCCceeeEEEEeecCCcchHHHHHhhhhH
Confidence 33445544 89999999999999999985 57778888883
No 220
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=78.40 E-value=1.5e+02 Score=35.14 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=19.5
Q ss_pred HHHHhhhhhcChhhhhhHhHHHHH
Q 005704 589 KYKKMYEDDINPFAAFSKKERDQR 612 (682)
Q Consensus 589 ~Y~~~YE~~L~Pf~~F~~~E~~r~ 612 (682)
.|-..+|+.=..+.-++++|.+..
T Consensus 715 qYDkiVEEkDaEL~~~k~KE~E~~ 738 (786)
T PF05483_consen 715 QYDKIVEEKDAELGLYKKKEQEQS 738 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888888888888888887764
No 221
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=78.15 E-value=44 Score=36.19 Aligned_cols=40 Identities=23% Similarity=0.340 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 005704 510 CNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNV 549 (682)
Q Consensus 510 t~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~ 549 (682)
-..+.-|.....+..++......++...+..++.|++-||
T Consensus 98 ~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv 137 (314)
T PF04111_consen 98 WREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTNV 137 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3444455666666777777777777777788888887443
No 222
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=78.12 E-value=86 Score=35.28 Aligned_cols=31 Identities=26% Similarity=0.358 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 005704 145 ELEEYRTEATHLKNQQSTIRRLEERNRQLEQQM 177 (682)
Q Consensus 145 el~~l~~el~~lknq~~~~~~Lkerl~~lE~~~ 177 (682)
.+.+|.+ +.|.||...+..+......+++..
T Consensus 340 ~~~e~~q--sqlen~k~~~e~~~~e~~~l~~~~ 370 (493)
T KOG0804|consen 340 IMSEYEQ--SQLENQKQYYELLITEADSLKQES 370 (493)
T ss_pred HHHHHHH--HHHHhHHHHHHHHHHHHHhhhhhh
Confidence 3344444 566667666655555555554444
No 223
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=77.79 E-value=1.4e+02 Score=34.28 Aligned_cols=99 Identities=21% Similarity=0.219 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005704 252 EVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNER 331 (682)
Q Consensus 252 Ele~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r 331 (682)
=+.++..+|..+|..+..++.+++.+..++..... .+++|.+.+..+++++.-+.-++..+-+-|....
T Consensus 199 ~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~E-----------e~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~ 267 (596)
T KOG4360|consen 199 LYGDCVKELRDTNTQARSGQEELQSKTKELSRQQE-----------ENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYK 267 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688888888999999999988888888765443 3458899999999999998888888777776665
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHhc
Q 005704 332 EQHMN---EIKKLNALLIEKEAALEDMKKELQA 361 (682)
Q Consensus 332 ~~~~~---~~~~L~~ql~~~~~~~~~le~~l~~ 361 (682)
+.+.. +..+++++..+.-....+.+.+++.
T Consensus 268 da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~ 300 (596)
T KOG4360|consen 268 DAQRQLTAELEELEDKYAECMQMLHEAEEELKC 300 (596)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55432 3333443333333333344443333
No 224
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.75 E-value=1.4e+02 Score=34.43 Aligned_cols=104 Identities=13% Similarity=0.223 Sum_probs=62.3
Q ss_pred hhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q 005704 301 YLENSLSAKEKIISELNSELHNIETALSNEREQHMNEI--KKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKIL 378 (682)
Q Consensus 301 ~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~--~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~L 378 (682)
.+.++|..++--+.+-.+++..+++.|........+.. -...+++..+..+...++.+.... -.++++-|.||
T Consensus 377 k~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~ddar~~pe~~d~i~~le~e~~~y~de~~ka-----qaevdrlLeil 451 (654)
T KOG4809|consen 377 KRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDDARMNPEFADQIKQLEKEASYYRDECGKA-----QAEVDRLLEIL 451 (654)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcChhhHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 34444555555555666666666666665554433322 445556677777777777777765 35567779999
Q ss_pred HhccccCccchhhhhhcchhhhchHHHHHHHHhhhhhHH
Q 005704 379 QAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHE 417 (682)
Q Consensus 379 k~iEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~e 417 (682)
+.+|----|++ .....++.-...+|++.+|-
T Consensus 452 keveneKnDkd--------kkiaeler~~kdqnkkvaNl 482 (654)
T KOG4809|consen 452 KEVENEKNDKD--------KKIAELERHMKDQNKKVANL 482 (654)
T ss_pred HHHHhhhcccc--------chhhhcCchhhhhhhHHhhH
Confidence 98865433322 12334556667777776553
No 225
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=77.75 E-value=1.1e+02 Score=33.19 Aligned_cols=26 Identities=4% Similarity=0.028 Sum_probs=17.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHH
Q 005704 501 DQSSMLKVICNQRDRFRARLRETEEE 526 (682)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~r~~ELE~e 526 (682)
..+.+-.+.++=.|-...+|.-|-++
T Consensus 273 s~sdLksl~~aLle~indK~~al~Hq 298 (319)
T PF09789_consen 273 SISDLKSLATALLETINDKNLALQHQ 298 (319)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 45555677777777777777766554
No 226
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=77.69 E-value=81 Score=31.64 Aligned_cols=58 Identities=22% Similarity=0.268 Sum_probs=30.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005704 407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY 464 (682)
Q Consensus 407 Ll~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~ 464 (682)
|..++-++....-.+...+..+..++......-......++.+...+..||..+....
T Consensus 128 l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k 185 (205)
T KOG1003|consen 128 LSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAK 185 (205)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHH
Confidence 4445555555555555555555555555555555555555555555555555554443
No 227
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=77.50 E-value=57 Score=29.77 Aligned_cols=44 Identities=14% Similarity=0.352 Sum_probs=32.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005704 501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKT 544 (682)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~L 544 (682)
......+++....+..+.+...++.++.....++..++..+..+
T Consensus 84 ~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 84 SLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55566778888888888888888888888777777777766543
No 228
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=77.27 E-value=1.4e+02 Score=33.98 Aligned_cols=30 Identities=20% Similarity=0.186 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005704 254 NLLMDEVERAQTRLLSLQREKDLLRSQLQS 283 (682)
Q Consensus 254 e~l~~DLEra~~R~~~LE~e~E~Lr~eL~~ 283 (682)
..+..-+-.++.+....+.+...+...+..
T Consensus 242 ~~ln~ql~~~~~~~~~~~a~l~~~~~~~~~ 271 (458)
T COG3206 242 SALNTQLQSARARLAQAEARLASLLQLLPL 271 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334444444555556666666666555443
No 229
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=76.83 E-value=68 Score=30.79 Aligned_cols=46 Identities=9% Similarity=0.271 Sum_probs=36.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
+...-+.++.++.+-+......+.+.+..+.+++..+.+++..+..
T Consensus 91 ~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q 136 (145)
T COG1730 91 SADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQ 136 (145)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566778888888888888888888888888888888877776655
No 230
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.61 E-value=1.1e+02 Score=32.40 Aligned_cols=15 Identities=20% Similarity=0.383 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHhc
Q 005704 367 MVDDLRKKVKILQAV 381 (682)
Q Consensus 367 DyeelK~EL~~Lk~i 381 (682)
.+-++=..+..+..|
T Consensus 128 SfsD~IsRvtAi~~i 142 (265)
T COG3883 128 SFSDLISRVTAISVI 142 (265)
T ss_pred cHHHHHHHHHHHHHH
Confidence 456666667777765
No 231
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=76.39 E-value=57 Score=29.17 Aligned_cols=45 Identities=13% Similarity=0.317 Sum_probs=32.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005704 501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTK 545 (682)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk 545 (682)
+-..+.|.|..+.+....++..++.++.....++..++.++..++
T Consensus 60 ~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 60 EKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566677878777777777777777777777777777776666554
No 232
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=75.45 E-value=99 Score=31.47 Aligned_cols=47 Identities=21% Similarity=0.281 Sum_probs=29.6
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 410 KNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKL 456 (682)
Q Consensus 410 kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kL 456 (682)
-.++.+.+++.|+..+...+-++..|+..+.....+.+++...-..|
T Consensus 155 v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeL 201 (207)
T PF05010_consen 155 VRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDEL 201 (207)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666666666777666666666666665544443
No 233
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=74.25 E-value=1e+02 Score=37.63 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=11.6
Q ss_pred HhhhhccCCCCHHHHHHH
Q 005704 108 IYQKLYEAPDPYPALASI 125 (682)
Q Consensus 108 ~Y~~L~eaPDP~PlLe~s 125 (682)
.|+.+.-+|+.+-.++-|
T Consensus 477 ~Ykl~~G~~g~S~a~~iA 494 (782)
T PRK00409 477 TYRLLIGIPGKSNAFEIA 494 (782)
T ss_pred EEEEeeCCCCCcHHHHHH
Confidence 477777777666665554
No 234
>PRK14011 prefoldin subunit alpha; Provisional
Probab=74.10 E-value=68 Score=30.70 Aligned_cols=45 Identities=18% Similarity=0.275 Sum_probs=36.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 502 QSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 502 ~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
+-.+-.-+..=.+.|+.|+.+|+.........+..+..++..++.
T Consensus 79 Gy~VEk~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~ 123 (144)
T PRK14011 79 DIYLEKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRK 123 (144)
T ss_pred CeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334456667899999999999999999999999999999886
No 235
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=74.04 E-value=1.5e+02 Score=32.82 Aligned_cols=28 Identities=14% Similarity=0.046 Sum_probs=20.5
Q ss_pred HHHHHhhhhcCChhHHHhhHhHHHHHHH
Q 005704 21 VSVISNFWKDFDLEKEKSLLDELGLKIA 48 (682)
Q Consensus 21 ~~~a~~~W~~~dl~~lq~~LD~~~~ei~ 48 (682)
-..+++-|-..-+..+.--+|++|.+.-
T Consensus 32 t~~~~k~~~~~~~~~~~~~~d~~A~~~~ 59 (593)
T KOG4807|consen 32 TSQWKKHWFVLTDSSLKYYRDSTAEEAD 59 (593)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 3456778888888888888888877653
No 236
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=74.00 E-value=1.1e+02 Score=31.46 Aligned_cols=63 Identities=17% Similarity=0.234 Sum_probs=51.3
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005704 402 KMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY 464 (682)
Q Consensus 402 ~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~ 464 (682)
.|=.-++.+-..|++.+..++.....+......+...+..+..++.+++.....+........
T Consensus 85 ~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~ak 147 (225)
T COG1842 85 DLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAK 147 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333346778888999999999999999999999999999999999998888888776665544
No 237
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=73.59 E-value=15 Score=29.76 Aligned_cols=43 Identities=30% Similarity=0.370 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHH
Q 005704 511 NQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYG 553 (682)
Q Consensus 511 ~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyE 553 (682)
.=|.|.+..+.+|+..+..+......|+.++..|+..+-.|..
T Consensus 19 ~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 19 RSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578888889999999999999999998888888886665543
No 238
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=73.38 E-value=78 Score=29.36 Aligned_cols=48 Identities=23% Similarity=0.291 Sum_probs=30.0
Q ss_pred chHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 401 SKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQ 449 (682)
Q Consensus 401 ~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~ 449 (682)
..++. |-+.-|+++.|++.++.++..+...-+.+..++..+..+.++.
T Consensus 16 ~~ve~-L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 16 QLVER-LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455 5666667777777777766666666666666666665554433
No 239
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=72.65 E-value=79 Score=29.42 Aligned_cols=51 Identities=14% Similarity=0.215 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005704 414 MEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY 464 (682)
Q Consensus 414 L~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~ 464 (682)
+..++......+..+......+..-=..-.+++...+..|.+|..||..-.
T Consensus 12 ~~~~~~~~~~~i~~~~~~~~~la~ld~k~tkEL~~Ak~e~~~Lr~dl~aG~ 62 (125)
T PF03245_consen 12 AQAALEAANAAIEDMQQRQQALAALDAKYTKELADAKAEIDRLRADLAAGN 62 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHcCC
Confidence 344444445555555555555555455666789999999999999998654
No 240
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=72.59 E-value=23 Score=29.49 Aligned_cols=44 Identities=30% Similarity=0.325 Sum_probs=31.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005704 502 QSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTK 545 (682)
Q Consensus 502 ~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk 545 (682)
....+..|..-||+|-.++...=.+..++..++..|+.|++.++
T Consensus 24 ~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 24 HEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34567788888999888887777777666666666666655443
No 241
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=72.54 E-value=1.9e+02 Score=33.40 Aligned_cols=48 Identities=17% Similarity=0.264 Sum_probs=36.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLE 457 (682)
Q Consensus 407 Ll~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE 457 (682)
+..+..+|+.||+.-|. .++..+..+.+.+..++.++..++..|+.|-
T Consensus 467 a~~~i~~LqDEL~TTr~---NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 467 ANQNISRLQDELETTRR---NYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566778877776654 5677778888888888888888888888764
No 242
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=72.49 E-value=74 Score=31.36 Aligned_cols=40 Identities=20% Similarity=0.414 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 507 KVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 507 ~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
..+....+.|+..+..+..+.+.....+...+.++..++.
T Consensus 126 ~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~ 165 (191)
T PF04156_consen 126 KSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRS 165 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444443
No 243
>PF14992 TMCO5: TMCO5 family
Probab=72.34 E-value=1.4e+02 Score=31.77 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHhhhc
Q 005704 504 SMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDY 561 (682)
Q Consensus 504 siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRylqsy 561 (682)
.++..++.---+....+..++.......+....-..++..+|. ++|=++.+
T Consensus 116 ~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE-------~L~rmE~e 166 (280)
T PF14992_consen 116 NKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKE-------KLRRMEEE 166 (280)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 4555555555566777777777666666666667777777777 55555553
No 244
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=72.25 E-value=1.1e+02 Score=32.37 Aligned_cols=74 Identities=20% Similarity=0.256 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 160 QSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQ---ALQDQLRQAKDSVATMQKLHELAQSQLF 236 (682)
Q Consensus 160 ~~~~~~Lkerl~~lE~~~e~~~~~~~~~~E~el~~~~eek~~~~~ere~---~L~~ql~~ae~~l~eL~~~le~~Q~eL~ 236 (682)
+++|+-|+.|+++-+..+.+.- .+. .+|+.++...++.|-+.|. +.|=-|.+|++.|+.|+.-++....-|.
T Consensus 67 EV~iRHLkakLkes~~~l~dRe----tEI-~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ 141 (305)
T PF15290_consen 67 EVCIRHLKAKLKESENRLHDRE----TEI-DELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLA 141 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhH----HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4566666666655544432211 111 1344566666666655542 2333567788888888888887776665
Q ss_pred Hh
Q 005704 237 EV 238 (682)
Q Consensus 237 ~l 238 (682)
+.
T Consensus 142 ek 143 (305)
T PF15290_consen 142 EK 143 (305)
T ss_pred hh
Confidence 44
No 245
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=72.08 E-value=68 Score=28.12 Aligned_cols=42 Identities=14% Similarity=0.366 Sum_probs=32.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELE 542 (682)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~ 542 (682)
+-..+.+.+..+.+.+...+..|+..+.....++..++..+.
T Consensus 59 ~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 59 DKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888888888888877777776666443
No 246
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=71.98 E-value=1e+02 Score=37.59 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=12.0
Q ss_pred HhhhhccCCCCHHHHHHH
Q 005704 108 IYQKLYEAPDPYPALASI 125 (682)
Q Consensus 108 ~Y~~L~eaPDP~PlLe~s 125 (682)
.|+.+.-+|+..-.++-|
T Consensus 472 ~Ykl~~G~~g~S~a~~iA 489 (771)
T TIGR01069 472 TYKLLKGIPGESYAFEIA 489 (771)
T ss_pred EEEECCCCCCCcHHHHHH
Confidence 477777788766555544
No 247
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=71.66 E-value=59 Score=31.61 Aligned_cols=68 Identities=26% Similarity=0.363 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 005704 250 QSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSN 329 (682)
Q Consensus 250 ~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~ 329 (682)
..|+..+..++...+.++..+..++-.|+.+|....+..... . + ...|.+|..++..++..|..
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~---------e----l---~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNE---------E----L---REEIEELEEEIEELEEKLEK 134 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH---------H----H---HHHHHHHHHHHHHHHHHHHH
Confidence 355666666677777788888888888888888777665211 2 2 44478888888888888877
Q ss_pred HHHH
Q 005704 330 EREQ 333 (682)
Q Consensus 330 ~r~~ 333 (682)
++..
T Consensus 135 l~~~ 138 (169)
T PF07106_consen 135 LRSG 138 (169)
T ss_pred HHhC
Confidence 7763
No 248
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=71.58 E-value=90 Score=29.28 Aligned_cols=119 Identities=22% Similarity=0.317 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCcccc---cccccccccc
Q 005704 415 EHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSE---AGGTELSEKA 491 (682)
Q Consensus 415 ~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 491 (682)
..++..+..+++.+...++.++..+..+...+.+....+..|+ .+..... +..+.. +|++ +++.
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~----~l~~~~~-------~~e~lvplg~~~y--v~~~ 71 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLE----ELKSKGE-------GKETLVPIGAGSF--VKAK 71 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcccCC-------CCeEEEEcCCCcE--EEEE
Confidence 4456667777777777777777777777777777776665554 2221100 011111 1111 0000
Q ss_pred c---------cCCC-CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 492 D---------KKHT-YPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 492 ~---------~~~~-~~~~~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
- .|++ -..-....-++++....+.....+..+..++......+..++..+..+..
T Consensus 72 v~~~~kV~v~lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 72 VKDKDKVIVSLGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred ecCCCeEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000 00125556677777777777777777777777777777766666665543
No 249
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=71.56 E-value=47 Score=32.34 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=14.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 306 LSAKEKIISELNSELHNIETALSNEREQH 334 (682)
Q Consensus 306 l~~ke~ei~~L~~e~~~Le~~L~~~r~~~ 334 (682)
+...+.+|.+|.+++..+......++..+
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL 102 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAEL 102 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666655555555544444333
No 250
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=70.66 E-value=1.1e+02 Score=29.94 Aligned_cols=27 Identities=15% Similarity=0.393 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 256 LMDEVERAQTRLLSLQREKDLLRSQLQ 282 (682)
Q Consensus 256 l~~DLEra~~R~~~LE~e~E~Lr~eL~ 282 (682)
|+.|.++....+..++..+..|+..+.
T Consensus 143 ll~Dy~~~~~~~~~l~~~i~~l~rk~~ 169 (177)
T PF13870_consen 143 LLRDYDKTKEEVEELRKEIKELERKVE 169 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444443
No 251
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=70.48 E-value=78 Score=32.75 Aligned_cols=37 Identities=24% Similarity=0.426 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 504 SMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAE 540 (682)
Q Consensus 504 siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~E 540 (682)
.++.-..+.|++.+..+..+.+++..+...|+.++.+
T Consensus 67 ~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 67 NIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444457788888888999999999999999988888
No 252
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=70.26 E-value=1.9e+02 Score=32.60 Aligned_cols=23 Identities=13% Similarity=0.066 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005704 326 ALSNEREQHMNEIKKLNALLIEK 348 (682)
Q Consensus 326 ~L~~~r~~~~~~~~~L~~ql~~~ 348 (682)
...+....+...|.+|++|+..+
T Consensus 425 ~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 425 REKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Confidence 33344445555666666666554
No 253
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=69.84 E-value=1.7e+02 Score=31.90 Aligned_cols=39 Identities=15% Similarity=0.097 Sum_probs=30.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 247 VAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAN 285 (682)
Q Consensus 247 ~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~ 285 (682)
.....+++.|..|++-++.....+-.+.++.+.+-....
T Consensus 274 ~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~~~~~~~ 312 (362)
T TIGR01010 274 NEQTADYQRLVLQNELAQQQLKAALTSLQQTRVEADRQQ 312 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445678899999999999999888888888885544433
No 254
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=68.84 E-value=94 Score=31.79 Aligned_cols=31 Identities=29% Similarity=0.362 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005704 253 VNLLMDEVERAQTRLLSLQREKDLLRSQLQS 283 (682)
Q Consensus 253 le~l~~DLEra~~R~~~LE~e~E~Lr~eL~~ 283 (682)
+--+..+++.-+.++.++..+++.|+.+|+.
T Consensus 130 ~~d~ke~~ee~kekl~E~~~EkeeL~~elee 160 (290)
T COG4026 130 YMDLKEDYEELKEKLEELQKEKEELLKELEE 160 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555666666666666666553
No 255
>PRK10698 phage shock protein PspA; Provisional
Probab=68.73 E-value=1.4e+02 Score=30.52 Aligned_cols=22 Identities=9% Similarity=0.327 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhhh
Q 005704 138 ENRKMKIELEEYRTEATHLKNQ 159 (682)
Q Consensus 138 E~~kL~~el~~l~~el~~lknq 159 (682)
.-..+..++..++....+|..+
T Consensus 53 ~~k~~er~~~~~~~~~~~~e~k 74 (222)
T PRK10698 53 EKKQLTRRIEQAEAQQVEWQEK 74 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666544
No 256
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=68.72 E-value=84 Score=28.82 Aligned_cols=37 Identities=16% Similarity=0.335 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 510 CNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 510 t~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
..-.+-|..|+..|+..+......+..++.++..+..
T Consensus 85 ~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~ 121 (126)
T TIGR00293 85 EEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQ 121 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555556666666666666655555555443
No 257
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=67.81 E-value=49 Score=28.49 Aligned_cols=51 Identities=18% Similarity=0.259 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHH
Q 005704 507 KVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRF 557 (682)
Q Consensus 507 ~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRy 557 (682)
..-...|+++..++.+|...|..+...+...+.|.++|+++|-=|-.-|..
T Consensus 12 ~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~n 62 (80)
T PF10224_consen 12 KLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGN 62 (80)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667999999999999999999999999999999999976444333333
No 258
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=67.67 E-value=66 Score=26.22 Aligned_cols=45 Identities=16% Similarity=0.237 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005704 194 EENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEV 238 (682)
Q Consensus 194 ~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l 238 (682)
..+.+...+.......++.+|.+++..+.+|...++....++.++
T Consensus 14 Q~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 14 QAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555566666666777777777777666666555555444
No 259
>PF15294 Leu_zip: Leucine zipper
Probab=67.30 E-value=93 Score=33.05 Aligned_cols=112 Identities=22% Similarity=0.301 Sum_probs=0.0
Q ss_pred hhhccCCCCHHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHH----------
Q 005704 110 QKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQS----TIRRLEERNRQLEQ---------- 175 (682)
Q Consensus 110 ~~L~eaPDP~PlLe~s~~~~~~~~~le~E~~kL~~el~~l~~el~~lknq~~----~~~~Lkerl~~lE~---------- 175 (682)
.++.+. .|.|+|.. |+.+|+.||..|+..+..+..+.. +-.+|+..+.++..
T Consensus 119 ~pl~e~-g~~~ll~k-------------Ei~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~ 184 (278)
T PF15294_consen 119 EPLNES-GGSELLNK-------------EIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKD 184 (278)
T ss_pred cccccc-chHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q ss_pred -HHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 176 -QMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQL 235 (682)
Q Consensus 176 -~~e~~~~~~~~~~E~el~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL 235 (682)
-....--..+..+=..+..++++.........+.|...|......+-..+..+...+.+|
T Consensus 185 ~~~~~q~l~dLE~k~a~lK~e~ek~~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeL 245 (278)
T PF15294_consen 185 LSFKAQDLSDLENKMAALKSELEKALQDKESQQKALEETLQSCKHELLRVQEQLSLAEKEL 245 (278)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhH
No 260
>smart00338 BRLZ basic region leucin zipper.
Probab=67.24 E-value=19 Score=29.30 Aligned_cols=44 Identities=27% Similarity=0.376 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHH
Q 005704 510 CNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYG 553 (682)
Q Consensus 510 t~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyE 553 (682)
+.=|+|-+..+.+||.++..+......|+.++..|+..|..|-.
T Consensus 18 ~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 18 RRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577778889999999999999999999999999996666543
No 261
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=67.07 E-value=2.8e+02 Score=33.18 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 506 LKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAEL 541 (682)
Q Consensus 506 L~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei 541 (682)
|.-...-+.+..+++...++.+..+...+.+.+.-+
T Consensus 382 LsrAqea~~~lqqq~~~aee~Lk~v~eav~S~q~~L 417 (739)
T PF07111_consen 382 LSRAQEARRRLQQQTASAEEQLKLVSEAVSSSQQWL 417 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555566777777777766666666555433
No 262
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=65.94 E-value=2.5e+02 Score=32.32 Aligned_cols=30 Identities=27% Similarity=0.286 Sum_probs=25.5
Q ss_pred HHHhHHHHHHHhhhhhhhHHHHHHHhhhhc
Q 005704 84 LKGYQEEVDNLTKRAKFGENAFLNIYQKLY 113 (682)
Q Consensus 84 LK~yQ~EID~LTkRsK~aE~aFl~~Y~~L~ 113 (682)
.-.-|+|||.|-.+--..|.+.+++..-|.
T Consensus 22 ~~~lqaev~~lr~~~~~~e~~~~~l~~el~ 51 (531)
T PF15450_consen 22 VAELQAEVACLRGHKERCERATLSLLRELL 51 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445689999999999999999999887765
No 263
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=65.76 E-value=2.3e+02 Score=31.71 Aligned_cols=50 Identities=22% Similarity=0.273 Sum_probs=25.8
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 410 KNRKMEHELTQLKVKLSEKTSLLE----TA-EGKIAELTAKINEQQKLIQKLEDD 459 (682)
Q Consensus 410 kNrkL~~eLt~LR~~~~~l~~~l~----~l-~~~~~~l~~el~~~~~l~~kLE~D 459 (682)
--++|++|+..||......+.... ++ ++++.--+.-...+++|+..+|..
T Consensus 254 hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~erR 308 (552)
T KOG2129|consen 254 HIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINELERR 308 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 345567777777766654443322 22 222233333355566667777666
No 264
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=65.53 E-value=1.4e+02 Score=29.11 Aligned_cols=30 Identities=13% Similarity=0.191 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 200 LEILQEREQALQDQLRQAKDSVATMQKLHE 229 (682)
Q Consensus 200 ~~~~~ere~~L~~ql~~ae~~l~eL~~~le 229 (682)
.+.|.+..++|..++..++..++.|.....
T Consensus 84 Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~ 113 (158)
T PF09744_consen 84 EDQWRQERKDLQSQVEQLEEENRQLELKLK 113 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356667777777777777777777765554
No 265
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=65.00 E-value=1.2e+02 Score=28.03 Aligned_cols=43 Identities=21% Similarity=0.445 Sum_probs=31.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEK 543 (682)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~ 543 (682)
....-.+++...++.++....+|++.+.....++..+...+..
T Consensus 84 ~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~ 126 (129)
T cd00584 84 DLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQE 126 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667888888888888888887777777777776665543
No 266
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.83 E-value=2.6e+02 Score=32.03 Aligned_cols=64 Identities=17% Similarity=0.234 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 208 QALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQ 282 (682)
Q Consensus 208 ~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~ 282 (682)
++|..++.-....++.-+..+......+.+|+ +++-...++ +++++.|..+|++|.-.+=-.++
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLq-k~~ad~~~K----------I~~~k~r~~~Ls~RiLRv~ikqe 400 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRIRINAIGERVTELQ-KHHADAVAK----------IEEAKNRHVELSHRILRVMIKQE 400 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666667777777777777777 555444444 34456666666666555444443
No 267
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.72 E-value=37 Score=31.11 Aligned_cols=33 Identities=12% Similarity=0.215 Sum_probs=21.7
Q ss_pred hhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 005704 626 SGRFLLGNKYARTFAFFYTILLHVLVFTCLYRM 658 (682)
Q Consensus 626 ~~r~vl~nr~~R~~f~~Y~~~LH~lv~~~ly~~ 658 (682)
++|+.-=.|.++.-..+|+++.-+++|+++|++
T Consensus 84 m~r~~~~ar~sg~~l~~~m~~f~lV~~fi~~~~ 116 (118)
T KOG3385|consen 84 MGRLKTMARRSGISLLCWMAVFSLVAFFILWVW 116 (118)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHHhhee
Confidence 455554445577777888877777777766643
No 268
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=64.40 E-value=2.9e+02 Score=32.39 Aligned_cols=34 Identities=12% Similarity=0.173 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHhcCCChhh-HHHHHHHHHHHHhc
Q 005704 346 IEKEAALEDMKKELQARPTSKM-VDDLRKKVKILQAV 381 (682)
Q Consensus 346 ~~~~~~~~~le~~l~~~~~~sD-yeelK~EL~~Lk~i 381 (682)
..+...+..|...+..-. .+ ..-+..||..|+.+
T Consensus 408 ~~l~~a~~~l~~~l~~~~--~~~~~p~~~el~~l~~~ 442 (582)
T PF09731_consen 408 QQLWLAVDALKSALDSGN--AGSPRPFEDELRALKEL 442 (582)
T ss_pred HHHHHHHHHHHHHHHcCC--CcCCCCHHHHHHHHHHh
Confidence 334444555666655531 11 36678899999987
No 269
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=63.94 E-value=1.8e+02 Score=35.13 Aligned_cols=43 Identities=23% Similarity=0.233 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChh-hHHHHHHHHHHHHhc
Q 005704 339 KKLNALLIEKEAALEDMKKELQARPTSK-MVDDLRKKVKILQAV 381 (682)
Q Consensus 339 ~~L~~ql~~~~~~~~~le~~l~~~~~~s-DyeelK~EL~~Lk~i 381 (682)
..|+.++..+++.++.++..+..+|... +|.+|.|+.++.+.+
T Consensus 342 ~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~l 385 (726)
T PRK09841 342 RALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAV 385 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555566666655554222 366666666555543
No 270
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=63.68 E-value=2.5e+02 Score=31.51 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 250 QSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAN 285 (682)
Q Consensus 250 ~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~ 285 (682)
..+++.+-.|.......+..+|.++++|...|-+..
T Consensus 158 ~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~ 193 (446)
T KOG4438|consen 158 LKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDF 193 (446)
T ss_pred HHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555556666666777777777776665544
No 271
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=63.59 E-value=74 Score=30.16 Aligned_cols=72 Identities=18% Similarity=0.222 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---hHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 208 QALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQS---DEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRS 279 (682)
Q Consensus 208 ~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~---~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~ 279 (682)
..+...++.+...+...++.+.....+|..+.... +........+++-+..-+-.-++++..|-+||+.||.
T Consensus 22 ~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~ 96 (135)
T TIGR03495 22 RNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRR 96 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 44566666666666666666666666665553322 1122223334444444444455666666666666664
No 272
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=63.52 E-value=3.4e+02 Score=32.87 Aligned_cols=39 Identities=23% Similarity=0.347 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhhh
Q 005704 250 QSEVNLLMDEVERAQTRL---LSLQREKDLLRSQLQSANDEA 288 (682)
Q Consensus 250 ~aEle~l~~DLEra~~R~---~~LE~e~E~Lr~eL~~a~s~~ 288 (682)
..-|+-|+.|.+..=+.+ .-|+.+++-||+++..+++..
T Consensus 461 ~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~~~~ 502 (762)
T PLN03229 461 NEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKANSQD 502 (762)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhccccc
Confidence 455688888888765555 678999999999999986543
No 273
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=63.38 E-value=2e+02 Score=30.11 Aligned_cols=36 Identities=33% Similarity=0.638 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHH
Q 005704 141 KMKIELEEYRTEATHLKNQ-QSTIRRLEERNRQLEQQ 176 (682)
Q Consensus 141 kL~~el~~l~~el~~lknq-~~~~~~Lkerl~~lE~~ 176 (682)
..++++.+++.--.++..- +..+..++.+.++++..
T Consensus 31 ~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~ 67 (333)
T KOG1853|consen 31 QMREELNEFQEGSREIEAELESQLDQLETRNRDLETR 67 (333)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555444443322 12455566666666544
No 274
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=62.31 E-value=1.2e+02 Score=27.14 Aligned_cols=41 Identities=22% Similarity=0.178 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 005704 427 EKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSK 467 (682)
Q Consensus 427 ~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~ 467 (682)
+|...++=.+.+..-+...+.++...|..|...|.++....
T Consensus 5 eLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~ 45 (96)
T PF11365_consen 5 ELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKY 45 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555556666677777788888888889999998887643
No 275
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=62.19 E-value=1.6e+02 Score=30.74 Aligned_cols=40 Identities=10% Similarity=0.117 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 507 KVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 507 ~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
..+..+..+..+.+..|..++..++.....|=-.+.=|++
T Consensus 96 ~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 96 AELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555555556666666655555555555554555555
No 276
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=62.01 E-value=1.5e+02 Score=30.35 Aligned_cols=61 Identities=21% Similarity=0.317 Sum_probs=34.4
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHH
Q 005704 243 DEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHN 322 (682)
Q Consensus 243 ~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~ 322 (682)
+++.....++++.+.+++++-...+..++..+..|+.+.+ .+..+..+|-+++..
T Consensus 150 ~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e-------------------------~~~~EydrLlee~~~ 204 (216)
T KOG1962|consen 150 EEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSE-------------------------GLQDEYDRLLEEYSK 204 (216)
T ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HcccHHHHHHHHHHH
Confidence 4444445555566666665555555555555555555432 224456777777777
Q ss_pred HHHHHH
Q 005704 323 IETALS 328 (682)
Q Consensus 323 Le~~L~ 328 (682)
|+.++.
T Consensus 205 Lq~~i~ 210 (216)
T KOG1962|consen 205 LQEQIE 210 (216)
T ss_pred HHHHHh
Confidence 766543
No 277
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=61.67 E-value=2e+02 Score=29.76 Aligned_cols=37 Identities=14% Similarity=0.365 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh-ccccC
Q 005704 348 KEAALEDMKKELQARPTSKMVDDLRKKVKILQA-VGYNS 385 (682)
Q Consensus 348 ~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~-iEf~~ 385 (682)
....++.|+..+..- +.+.-+.+++=|++++- ++||.
T Consensus 129 R~~Rl~~L~~~l~~~-dv~~~ek~r~vlea~~~E~~yg~ 166 (251)
T PF11932_consen 129 RQERLARLRAMLDDA-DVSLAEKFRRVLEAYQIEMEYGR 166 (251)
T ss_pred HHHHHHHHHHhhhcc-CCCHHHHHHHHHHHHHHHHHhCC
Confidence 334455555555442 34556778888888886 67764
No 278
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=61.43 E-value=21 Score=36.52 Aligned_cols=49 Identities=35% Similarity=0.445 Sum_probs=42.2
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHH
Q 005704 507 KVICNQ--RDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKI 555 (682)
Q Consensus 507 ~Ivt~Q--RDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEki 555 (682)
.-|..| |||-+.|..|+|.++..+..+...|++|-++|+.-|-.|.-+-
T Consensus 77 NRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n 127 (292)
T KOG4005|consen 77 NRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKN 127 (292)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344444 9999999999999999999999999999999999998885443
No 279
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=61.23 E-value=3.2e+02 Score=31.94 Aligned_cols=15 Identities=33% Similarity=0.353 Sum_probs=6.5
Q ss_pred HhhhHHHHHHHHHHH
Q 005704 189 QRGLAEENQKTLEIL 203 (682)
Q Consensus 189 E~el~~~~eek~~~~ 203 (682)
+..|+..++..+.++
T Consensus 309 ~~~~~~e~~~~~~~l 323 (582)
T PF09731_consen 309 EEELREEFEREREEL 323 (582)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 280
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=61.16 E-value=93 Score=27.74 Aligned_cols=39 Identities=21% Similarity=0.364 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 005704 251 SEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAG 289 (682)
Q Consensus 251 aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~ 289 (682)
-++..+.++.+-.+..+.+++.+|+.|..+|+.-++...
T Consensus 8 ~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g 46 (96)
T PF11365_consen 8 RQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYG 46 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456677777888888999999999999999999887543
No 281
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=60.62 E-value=3.8e+02 Score=32.50 Aligned_cols=40 Identities=13% Similarity=0.133 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 005704 203 LQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQS 242 (682)
Q Consensus 203 ~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~ 242 (682)
.+.|....+..++-++.++..++..++..+..|.+.+.++
T Consensus 258 l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 258 IARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444455555666666666777777777777776666654
No 282
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=60.47 E-value=1.1e+02 Score=35.26 Aligned_cols=46 Identities=20% Similarity=0.291 Sum_probs=41.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
....++..+..|+-..+.+..+++.+++.+..++..+++++..+..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 128 EWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5677888889999999999999999999999999999999988876
No 283
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=60.45 E-value=1.7e+02 Score=31.17 Aligned_cols=75 Identities=20% Similarity=0.328 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH---HHhhHHHHHHHHHHHHHHHHHHH
Q 005704 192 LAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEE---RVAKQSEVNLLMDEVERAQTRLL 268 (682)
Q Consensus 192 l~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee---~~a~~aEle~l~~DLEra~~R~~ 268 (682)
+..++-...+++..|++.|..+|+.+-.+.+.+...+... +.+|.+. ....-++++.+|.|+
T Consensus 253 lh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~-------~e~y~q~~~gv~~rT~~L~eVm~e~-------- 317 (384)
T KOG0972|consen 253 LHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSEL-------REKYKQASVGVSSRTETLDEVMDEI-------- 317 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhcccHHHHHHHHHHHHHHH--------
Confidence 4455556667789999999999998888888776655533 3333332 333445666666654
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 005704 269 SLQREKDLLRSQLQSANDE 287 (682)
Q Consensus 269 ~LE~e~E~Lr~eL~~a~s~ 287 (682)
|.++.+++..+..
T Consensus 318 ------E~~KqemEe~G~~ 330 (384)
T KOG0972|consen 318 ------EQLKQEMEEQGAK 330 (384)
T ss_pred ------HHHHHHHHHhccc
Confidence 5566666655544
No 284
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=59.68 E-value=1.4e+02 Score=27.23 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 249 KQSEVNLLMDEVERAQTRLLSLQREKDLLR 278 (682)
Q Consensus 249 ~~aEle~l~~DLEra~~R~~~LE~e~E~Lr 278 (682)
+..||..+..+++..+.++..++..+..+.
T Consensus 79 k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 79 KEAEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777776766666554
No 285
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=59.05 E-value=42 Score=25.58 Aligned_cols=41 Identities=15% Similarity=0.283 Sum_probs=32.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 412 RKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKL 452 (682)
Q Consensus 412 rkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l 452 (682)
|+|+.+...|+...+.+...++.|..+...+.+++..+...
T Consensus 1 KQlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 1 KQLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777888888888888888888888888888887776543
No 286
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=58.83 E-value=3.7e+02 Score=31.78 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 209 ALQDQLRQAKDSVATMQKLHELAQSQLF 236 (682)
Q Consensus 209 ~L~~ql~~ae~~l~eL~~~le~~Q~eL~ 236 (682)
-|.+|++....+|++|..-++-.+..|.
T Consensus 129 vLteqVeaQgEKIrDLE~cie~kr~kLn 156 (861)
T KOG1899|consen 129 VLTEQVEAQGEKIRDLETCIEEKRNKLN 156 (861)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhhc
Confidence 4567777788888888877776555543
No 287
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=58.57 E-value=2.5e+02 Score=29.75 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 523 TEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 523 LE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
||.+|...+..|..|..++..++.
T Consensus 100 lEgQl~s~Kkqie~Leqelkr~Ks 123 (307)
T PF10481_consen 100 LEGQLNSCKKQIEKLEQELKRCKS 123 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444
No 288
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=58.44 E-value=2.3e+02 Score=29.23 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 310 EKIISELNSELHNIETALSNEREQH 334 (682)
Q Consensus 310 e~ei~~L~~e~~~Le~~L~~~r~~~ 334 (682)
...+..++..+..|+..+...|..-
T Consensus 191 ~~~~~~l~~~l~~Lq~~ln~~R~~e 215 (240)
T PF12795_consen 191 KARIQRLQQQLQALQNLLNQKRRQE 215 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346677777777777766655543
No 289
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=58.37 E-value=2.7e+02 Score=30.08 Aligned_cols=72 Identities=14% Similarity=0.188 Sum_probs=37.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q 005704 306 LSAKEKIISELNSELHNIETALSNEREQHMN-------EIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKIL 378 (682)
Q Consensus 306 l~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~-------~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~L 378 (682)
+..+.+++..|++||..|......++..... -+.+--.++...+..++.|...|... ..|+..-..|+.-|
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k--~Ee~~rQQEEIt~L 239 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARK--TEENRRQQEEITSL 239 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 3445556888888888887765555432221 11222234455555555565555554 23444444444444
Q ss_pred H
Q 005704 379 Q 379 (682)
Q Consensus 379 k 379 (682)
.
T Consensus 240 l 240 (306)
T PF04849_consen 240 L 240 (306)
T ss_pred H
Confidence 4
No 290
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=58.25 E-value=2e+02 Score=28.66 Aligned_cols=15 Identities=33% Similarity=0.581 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 005704 314 SELNSELHNIETALS 328 (682)
Q Consensus 314 ~~L~~e~~~Le~~L~ 328 (682)
.+|..++..|...+.
T Consensus 113 ~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 113 EELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 291
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=57.83 E-value=1.4e+02 Score=26.63 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 192 LAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHE 229 (682)
Q Consensus 192 l~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le 229 (682)
+...++.++..+..+.+.+..++...+.++.+++..+.
T Consensus 64 a~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~ 101 (105)
T cd00632 64 ARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQ 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555554444
No 292
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=57.69 E-value=70 Score=25.63 Aligned_cols=47 Identities=23% Similarity=0.307 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 005704 213 QLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSL 270 (682)
Q Consensus 213 ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~L 270 (682)
++..+...+..|.......+.++ .+..+++..+..|..||+.|+...
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv-----------~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDV-----------NALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555555555555333332 233456667778888888888643
No 293
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=57.55 E-value=43 Score=38.03 Aligned_cols=37 Identities=19% Similarity=0.309 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005704 251 SEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDE 287 (682)
Q Consensus 251 aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~ 287 (682)
.|++++...++..+.++.+++.++..|+.+++.+...
T Consensus 90 qElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~ 126 (475)
T PRK13729 90 RELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGAN 126 (475)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 4455556666666778889999999999999765543
No 294
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=57.33 E-value=97 Score=35.85 Aligned_cols=93 Identities=16% Similarity=0.210 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhccccCccchhhhhhcchhhhchHHHHHHHHhhhhhHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 005704 368 VDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLK-------VKLSEKTSLLETAEGKIA 440 (682)
Q Consensus 368 yeelK~EL~~Lk~iEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~LR-------~~~~~l~~~l~~l~~~~~ 440 (682)
-+.++.+|..+-+--.|.+|+. |+...=+.-++.|+++ |-.|-.--..|. .+.++|..+-.-|+.++.
T Consensus 272 t~sl~eels~aGs~liGdvdeg----AdllGMGrEVeNLilE-NsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgEle 346 (832)
T KOG2077|consen 272 TESLFEELSSAGSGLIGDVDEG----ADLLGMGREVENLILE-NSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELE 346 (832)
T ss_pred ccchhhhhhhccccccccccch----hhhhcchHHHHHHHHh-hHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHH
Confidence 3567777777776444444432 2111112345554444 222222222233 334444444444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Q 005704 441 ELTAKINEQQKLIQKLEDDILKGYS 465 (682)
Q Consensus 441 ~l~~el~~~~~l~~kLE~DL~~~~~ 465 (682)
...+-...++..|.+||..|-++.+
T Consensus 347 a~kqak~Klee~i~elEEElk~~k~ 371 (832)
T KOG2077|consen 347 AVKQAKLKLEEKIRELEEELKKAKA 371 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555666677777777766654
No 295
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=56.12 E-value=67 Score=31.99 Aligned_cols=58 Identities=16% Similarity=0.269 Sum_probs=52.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005704 406 LLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY 464 (682)
Q Consensus 406 lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~ 464 (682)
.|+.+++.|..-|..+ ..|+++..++..|..++..+...+...-......+++|..+-
T Consensus 6 ~L~~~d~~L~~~L~~l-~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 6 DLIEADDELSSALEEL-QEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4889999999999998 678889999999999999999999999999999999998876
No 296
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=55.69 E-value=1.2e+02 Score=34.54 Aligned_cols=52 Identities=19% Similarity=0.365 Sum_probs=24.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 005704 136 ESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEI 187 (682)
Q Consensus 136 e~E~~kL~~el~~l~~el~~lknq~~~~~~Lkerl~~lE~~~e~~~~~~~~~ 187 (682)
.+.++-|-.++.++++++..+..+-.....--+++++-+...+..+..+|..
T Consensus 58 ~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~ 109 (472)
T TIGR03752 58 ADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQS 109 (472)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 3445555555555555555554443332222233333444555555555544
No 297
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=55.47 E-value=1.8e+02 Score=29.26 Aligned_cols=33 Identities=12% Similarity=0.276 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005704 207 EQALQDQLRQAKDSVATMQKLHELAQSQLFEVR 239 (682)
Q Consensus 207 e~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~ 239 (682)
.+.+.+.|...+.++..|+.-+...+.+|..|+
T Consensus 162 l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 162 LKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566777778888888888877777777664
No 298
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=55.20 E-value=1.5e+02 Score=30.39 Aligned_cols=52 Identities=19% Similarity=0.263 Sum_probs=22.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLED 458 (682)
Q Consensus 407 Ll~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~ 458 (682)
|+..|-.++.++...+-.+..+..+...|+..+..+..++..++.-...||.
T Consensus 154 L~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~ 205 (290)
T COG4026 154 LLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcc
Confidence 4444444444444444444444444444444444444444444444444433
No 299
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=55.11 E-value=3e+02 Score=29.67 Aligned_cols=150 Identities=17% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHhhhhccCCCCHHHHHHHHHHHh-hhh-----hhHHhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 005704 103 NAFLNIYQKLYEAPDPYPALASIAEQDL-KLS-----ELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQ 176 (682)
Q Consensus 103 ~aFl~~Y~~L~eaPDP~PlLe~s~~~~~-~~~-----~le~E~~kL~~el~~l~~el~~lknq~~~~~~Lkerl~~lE~~ 176 (682)
.||+.+|+.--.|-.-+--+..+++... ++. .+.....++.+.+..+++.+.++ ...|+.|+..+..+...
T Consensus 34 gA~Y~~yQ~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l---~~~i~~l~~~i~~y~~~ 110 (301)
T PF06120_consen 34 GAWYYFYQNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDL---QKKIDSLKDQIKNYQQQ 110 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q ss_pred HHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHH
Q 005704 177 MEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLL 256 (682)
Q Consensus 177 ~e~~~~~~~~~~E~el~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l 256 (682)
+ ..-...+...-..+-.....+..+...+.++|..++.++.........+|..|.++..+.-...-....|..-+
T Consensus 111 ~-----~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~~~~~~~~~~ir~~~~e~~~~ 185 (301)
T PF06120_consen 111 L-----AEKGITENGYIINHLMSQADATRKLAEATRELAVAQERLEQMQSKASETQATLNDLTEQRIDLIRQKAAEQAGA 185 (301)
T ss_pred H-----hccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q 005704 257 MDEV 260 (682)
Q Consensus 257 ~~DL 260 (682)
..-|
T Consensus 186 ~~sl 189 (301)
T PF06120_consen 186 YNSL 189 (301)
T ss_pred HHHH
No 300
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=54.69 E-value=2.9e+02 Score=29.26 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=23.1
Q ss_pred HhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 005704 247 VAKQSEVNLLMDEVERAQ-------TRLLSLQREKDLLRSQLQ 282 (682)
Q Consensus 247 ~a~~aEle~l~~DLEra~-------~R~~~LE~e~E~Lr~eL~ 282 (682)
+++.+-|-++..|||+-+ .|+..|+.+.+.|..+++
T Consensus 26 ~aKtdairiL~QdLEkfe~Ekd~~a~~aETLeln~ealere~e 68 (389)
T KOG4687|consen 26 GAKTDAIRILGQDLEKFENEKDGLAARAETLELNLEALERELE 68 (389)
T ss_pred cccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhH
Confidence 345566778888888864 445566666666655544
No 301
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=54.59 E-value=2e+02 Score=27.51 Aligned_cols=10 Identities=10% Similarity=0.551 Sum_probs=4.2
Q ss_pred HHHHHHHHhc
Q 005704 352 LEDMKKELQA 361 (682)
Q Consensus 352 ~~~le~~l~~ 361 (682)
...++..+..
T Consensus 179 ~~~l~~~~~~ 188 (202)
T PF01442_consen 179 IEELESSIDR 188 (202)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 302
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=54.49 E-value=2.9e+02 Score=29.21 Aligned_cols=99 Identities=11% Similarity=0.173 Sum_probs=57.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccc
Q 005704 409 DKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELS 488 (682)
Q Consensus 409 ~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (682)
+..|-|..-+..+.++.+.....++....+...|.++++..+...+++-..|+++++.
T Consensus 105 e~Ekvlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~Lqsi---------------------- 162 (338)
T KOG3647|consen 105 EVEKVLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSI---------------------- 162 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------------
Confidence 3333444444444444445555555555556666666666666666666666666543
Q ss_pred cccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 489 EKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 489 ~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
-|--...-++|..+...|=+-.-.-++.++-|+..++-+-.
T Consensus 163 -----------------RP~~MdEyE~~EeeLqkly~~Y~l~f~nl~yL~~qldd~~r 203 (338)
T KOG3647|consen 163 -----------------RPAHMDEYEDCEEELQKLYQRYFLRFHNLDYLKSQLDDRTR 203 (338)
T ss_pred -----------------chHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 34445556666666666666666666667777776665544
No 303
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=54.31 E-value=25 Score=38.06 Aligned_cols=54 Identities=11% Similarity=0.203 Sum_probs=29.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHhhhc
Q 005704 501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDY 561 (682)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRylqsy 561 (682)
+.++.+.-+.+....+...+..++-++..++..++..--.|..|++ ++.-|++=
T Consensus 102 ~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~-------RV~~LEs~ 155 (326)
T PF04582_consen 102 SLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLES-------RVKALESG 155 (326)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHTT
T ss_pred hhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHH-------HHHHHhcC
Confidence 3444455556666667777777788888888888877777888888 77777664
No 304
>PRK09343 prefoldin subunit beta; Provisional
Probab=54.28 E-value=1.8e+02 Score=26.84 Aligned_cols=43 Identities=23% Similarity=0.429 Sum_probs=28.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEK 543 (682)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~ 543 (682)
+-..+..-|....+-...++..|+.....+..++..++..+..
T Consensus 68 d~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ 110 (121)
T PRK09343 68 DKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINE 110 (121)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666677777777777777777766666666666664433
No 305
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=54.19 E-value=41 Score=26.33 Aligned_cols=37 Identities=30% Similarity=0.394 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 510 CNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 510 t~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
..-|.|-+....+|+.++..+...+..|+.++..|+.
T Consensus 17 ~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 17 RRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456777777888888888888888888888877764
No 306
>PRK11519 tyrosine kinase; Provisional
Probab=54.18 E-value=4.6e+02 Score=31.75 Aligned_cols=38 Identities=11% Similarity=0.209 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 005704 205 EREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQS 242 (682)
Q Consensus 205 ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~ 242 (682)
.+....+..++-++.++.+++..++..+..|.+.+.++
T Consensus 260 ~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~ 297 (719)
T PRK11519 260 RKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDK 297 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33344445555566666666666666666666665543
No 307
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=54.03 E-value=46 Score=30.04 Aligned_cols=45 Identities=29% Similarity=0.423 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH
Q 005704 335 MNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQ 379 (682)
Q Consensus 335 ~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk 379 (682)
...+..+.+.+......++.+|.++..+|+..|+..|+-++.-++
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~ 78 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELR 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 456677777778888889999999999999999999999999888
No 308
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=54.02 E-value=2.4e+02 Score=28.12 Aligned_cols=82 Identities=22% Similarity=0.256 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005704 207 EQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAND 286 (682)
Q Consensus 207 e~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s 286 (682)
...|..+|+.+...+..|...+.....+...+.............|-+-...=+-....|+..|=+++-.||..+.+.++
T Consensus 83 N~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~elr~ 162 (182)
T PF15035_consen 83 NALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQYLSSEHSRLLSLWREVVALRRQFAELRT 162 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666666665555444444333333333333333444444444566666666777777777666665
Q ss_pred hh
Q 005704 287 EA 288 (682)
Q Consensus 287 ~~ 288 (682)
.+
T Consensus 163 ~T 164 (182)
T PF15035_consen 163 AT 164 (182)
T ss_pred HH
Confidence 55
No 309
>PF06387 Calcyon: D1 dopamine receptor-interacting protein (calcyon); InterPro: IPR009431 This family consists of several D1 dopamine receptor-interacting (calcyon) proteins. D1/D5 dopamine receptors in the basal ganglia, hippocampus, and cerebral cortex modulate motor, reward, and cognitive behaviour. D1-like dopamine receptors likely modulate neocortical and hippocampal neuronal excitability and synaptic function via Ca2+ as well as cAMP-dependent signalling []. Defective calcyon proteins have been implicated in both attention-deficit/hyperactivity disorder (ADHD) [] and schizophrenia.; GO: 0050780 dopamine receptor binding, 0007212 dopamine receptor signaling pathway, 0016021 integral to membrane
Probab=53.91 E-value=9.6 Score=37.21 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=21.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 005704 634 KYARTFAFFYTILLHVLVFTCLYRMSALSY 663 (682)
Q Consensus 634 r~~R~~f~~Y~~~LH~lv~~~ly~~~~~~~ 663 (682)
+++|++.|. +-+|-|+||+++|+.-|-..
T Consensus 83 k~t~lI~~a-lAfl~Cv~~Lv~YKa~wYDq 111 (186)
T PF06387_consen 83 KVTRLIAFA-LAFLGCVVFLVMYKAIWYDQ 111 (186)
T ss_pred chhHHHHHH-HHHHHHHHHHHhheeeeecc
Confidence 566666544 44678888999999877554
No 310
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=53.67 E-value=6.1e+02 Score=32.76 Aligned_cols=194 Identities=20% Similarity=0.282 Sum_probs=106.5
Q ss_pred hhhhcCChhHHHhhHhHH--HHHHHHhhHhhHHHHHHHHHHhHHhhcCCcHHHHHhhHHHHHHhHHHHHHHhhhhhhhHH
Q 005704 26 NFWKDFDLEKEKSLLDEL--GLKIAENQENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGEN 103 (682)
Q Consensus 26 ~~W~~~dl~~lq~~LD~~--~~ei~~~q~~s~~sRK~La~~Tk~Fkk~~~eekl~~~~~LLK~yQ~EID~LTkRsK~aE~ 103 (682)
..|--..-..|.+.+|.- ++.-.-..+.-..-|| .+..=+|-|+.+++.|-.---.+|.
T Consensus 160 S~WPLsEp~~LKkkfD~IF~~tky~KAld~~kk~rk-------------------d~~~evk~~~~~l~~lk~~K~~~e~ 220 (1294)
T KOG0962|consen 160 STWPLSEPKNLKKKFDDIFSATKYTKALDSLKKLRK-------------------DQSQEVKTKKQELEHLKTLKERAEV 220 (1294)
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579888999999999963 2222333333333333 3333466778888888888888888
Q ss_pred HHHHHhhhhccCCCCHHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 005704 104 AFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKE 183 (682)
Q Consensus 104 aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~~~le~E~~kL~~el~~l~~el~~lknq~~~~~~Lkerl~~lE~~~e~~~~~ 183 (682)
.-+++-..+.-. -..-.++.+++.++......+.++...+.++......+..|+.+...+.......-..
T Consensus 221 ~~l~i~~~~~ki----------~~~ke~v~e~e~e~~~~~~~i~ei~~~~~el~k~~~~~~~l~~e~~~l~~~~~~l~~~ 290 (1294)
T KOG0962|consen 221 LRLNIHSGQRKI----------EKSKEEVSELENELGPIEAKIEEIEKSLKELEKLLKQVKLLDSEHKNLKKQISRLREK 290 (1294)
T ss_pred HHHHHHHHHHHH----------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 887776654411 1112233456666655555555555555555444445555555444443333221111
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHH
Q 005704 184 IVEIKQRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEV 253 (682)
Q Consensus 184 ~~~~~E~el~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEl 253 (682)
+...+..-...+.+...|+.++...+..++...+..+..+.. .+..|...+.+++-+....+++.
T Consensus 291 -i~~~~~~t~~~l~~~~~n~~~~~~~~~~~~~~~e~~~~~l~~----e~~~l~~~k~~~~~~~~~lq~e~ 355 (1294)
T KOG0962|consen 291 -ILKIFDGTDEELGELLSNFEERLEEMGEKLRELEREISDLNE----ERSSLIQLKTELDLEQSELQAEA 355 (1294)
T ss_pred -cccccccchHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 111122223355666677777777777777777777776652 33344455555555544444443
No 311
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=53.63 E-value=1.2e+02 Score=26.10 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhHH-HHHHHHH
Q 005704 138 ENRKMKIELEEYRTEATHLKNQQS-TIRRLEE 168 (682)
Q Consensus 138 E~~kL~~el~~l~~el~~lknq~~-~~~~Lke 168 (682)
|+.-++..+-+|+.....+|.+|. +|.+|+.
T Consensus 40 Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~ 71 (79)
T PF08581_consen 40 EMQQIRQKVYELEQAHRKMKQQYEEEIARLRR 71 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777777777777765 5555554
No 312
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=53.54 E-value=46 Score=28.63 Aligned_cols=48 Identities=21% Similarity=0.405 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHhhhcccc
Q 005704 517 RARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNNE 564 (682)
Q Consensus 517 r~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRylqsy~~~ 564 (682)
+....+|-.+.-.++..+..|-..|+..+.+|-||=.-=+|||.|-++
T Consensus 15 ~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~n 62 (80)
T PF10224_consen 15 KEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGN 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778999999999999999999999999999999999999999765
No 313
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=53.44 E-value=43 Score=31.26 Aligned_cols=46 Identities=26% Similarity=0.346 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHhhhcc
Q 005704 510 CNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYN 562 (682)
Q Consensus 510 t~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRylqsy~ 562 (682)
-.|++.+...+.+|..++.++...++.++.|++.++. |-.-+++|.
T Consensus 73 v~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~-------k~e~l~~~~ 118 (135)
T KOG4196|consen 73 VQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKS-------KYEALQNSA 118 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhh
Confidence 4578888888999999999999999999999998888 554455553
No 314
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=53.29 E-value=4.3e+02 Score=30.91 Aligned_cols=14 Identities=14% Similarity=0.299 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 005704 266 RLLSLQREKDLLRS 279 (682)
Q Consensus 266 R~~~LE~e~E~Lr~ 279 (682)
++.+++.|...++.
T Consensus 302 ~L~ele~RL~~l~~ 315 (563)
T TIGR00634 302 RLNEIEERLAQIKR 315 (563)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 315
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=53.05 E-value=4.5 Score=46.15 Aligned_cols=28 Identities=29% Similarity=0.442 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 306 LSAKEKIISELNSELHNIETALSNEREQ 333 (682)
Q Consensus 306 l~~ke~ei~~L~~e~~~Le~~L~~~r~~ 333 (682)
+.+-++.|..|.+.|.+|-.+|..++..
T Consensus 467 i~aQ~~~i~~Ldaan~Rl~sal~~lk~r 494 (495)
T PF12004_consen 467 IDAQEKRIAALDAANSRLMSALTQLKER 494 (495)
T ss_dssp ----------------------------
T ss_pred HHHhhhhccccccccccccccccccccC
Confidence 3444666888888888888888777653
No 316
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=52.96 E-value=4.7e+02 Score=31.30 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh
Q 005704 343 ALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQA 380 (682)
Q Consensus 343 ~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~ 380 (682)
..+++.+.++..|++++..+ ...+++++++|.-|-+
T Consensus 160 ~kLeelr~~L~~L~~ek~~R--lekv~~~~~~I~~l~~ 195 (660)
T KOG4302|consen 160 EKLEELREHLNELQKEKSDR--LEKVLELKEEIKSLCS 195 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 44577788888888888877 6789999999988887
No 317
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=52.81 E-value=64 Score=29.28 Aligned_cols=52 Identities=19% Similarity=0.355 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHhhh
Q 005704 509 ICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQD 560 (682)
Q Consensus 509 vt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRylqs 560 (682)
|..+.+.|.+.+..|-.++..++..+..+--|-..|+-.|-+|++++.-+..
T Consensus 6 l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 6 LFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567788888888888888888888888888999999999999999887755
No 318
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=52.66 E-value=1.2e+02 Score=28.32 Aligned_cols=67 Identities=16% Similarity=0.329 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhc
Q 005704 313 ISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAV 381 (682)
Q Consensus 313 i~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~i 381 (682)
+..+-..+..+.++|...++.+...|+.+...+++.......++.++..+ ..|.+.|+.++..++.+
T Consensus 45 ~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v--~~dv~~i~~dv~~v~~~ 111 (126)
T PF07889_consen 45 VASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEV--REDVSQIGDDVDSVQQM 111 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHH
Confidence 45556666777777777888888888888888877777777777776666 46677777666666654
No 319
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=52.32 E-value=55 Score=26.44 Aligned_cols=37 Identities=24% Similarity=0.428 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005704 512 QRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADN 548 (682)
Q Consensus 512 QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN 548 (682)
+.+.+..++..|+.+...+...+..|+.++..|+..|
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4445555555555555555555555555555555544
No 320
>PLN02939 transferase, transferring glycosyl groups
Probab=52.09 E-value=5.8e+02 Score=32.06 Aligned_cols=7 Identities=29% Similarity=-0.002 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 005704 637 RTFAFFY 643 (682)
Q Consensus 637 R~~f~~Y 643 (682)
|..||+.
T Consensus 592 RF~~Fsr 598 (977)
T PLN02939 592 RFSYFSR 598 (977)
T ss_pred HHHHHHH
Confidence 4444433
No 321
>PRK11519 tyrosine kinase; Provisional
Probab=51.95 E-value=3.2e+02 Score=33.08 Aligned_cols=12 Identities=25% Similarity=0.224 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 005704 368 VDDLRKKVKILQ 379 (682)
Q Consensus 368 yeelK~EL~~Lk 379 (682)
|.+|+++.++-+
T Consensus 372 ~~~L~Re~~~~~ 383 (719)
T PRK11519 372 IVRLTRDVESGQ 383 (719)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 322
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=51.04 E-value=1.7e+02 Score=26.50 Aligned_cols=44 Identities=20% Similarity=0.308 Sum_probs=22.9
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 404 ESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKIN 447 (682)
Q Consensus 404 E~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~ 447 (682)
|.-+-+..+-+...+..++.....++..+..+..++..+...++
T Consensus 82 e~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 82 EKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34344444555555555555555555555555555555544443
No 323
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=50.86 E-value=68 Score=28.80 Aligned_cols=40 Identities=30% Similarity=0.351 Sum_probs=34.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAE 540 (682)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~E 540 (682)
-.+.+.|....++++++.+..+++.+...+..+|..++.|
T Consensus 70 i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~e 109 (109)
T PF03980_consen 70 IRAHLAPYKKKEREQLNARLQELEEENEALAEEIQEQRKE 109 (109)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4556789999999999999999999999999988887653
No 324
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=50.56 E-value=89 Score=26.31 Aligned_cols=44 Identities=23% Similarity=0.222 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHH
Q 005704 514 DRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRF 557 (682)
Q Consensus 514 DRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRy 557 (682)
.-++.+|.+|.++...+......|+.+...|+.+=-..+++|+-
T Consensus 21 ~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~ 64 (72)
T PF06005_consen 21 ALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRS 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555554444556554
No 325
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=49.75 E-value=2.2e+02 Score=26.45 Aligned_cols=39 Identities=18% Similarity=0.251 Sum_probs=18.1
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 189 QRGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKL 227 (682)
Q Consensus 189 E~el~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~ 227 (682)
-.++..+++++++-++-+.+.|+++-+..+.++++|+..
T Consensus 68 k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~ 106 (119)
T COG1382 68 KEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSE 106 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555444444444444444444444444433
No 326
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=49.56 E-value=3.3e+02 Score=28.43 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 257 MDEVERAQTRLLSLQREKDLLRSQ 280 (682)
Q Consensus 257 ~~DLEra~~R~~~LE~e~E~Lr~e 280 (682)
..+++..+.|+..+..+++.++.+
T Consensus 62 ~~~~~~~~~r~~~l~~~i~~~~~~ 85 (302)
T PF10186_consen 62 KREIEELRERLERLRERIERLRKR 85 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 327
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=49.50 E-value=2.7e+02 Score=27.38 Aligned_cols=32 Identities=16% Similarity=0.403 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 005704 251 SEVNLLMDEVERA-QTRLLSLQREKDLLRSQLQ 282 (682)
Q Consensus 251 aEle~l~~DLEra-~~R~~~LE~e~E~Lr~eL~ 282 (682)
+.+..+..|+... +.....+..+++.|+.+++
T Consensus 58 a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie 90 (177)
T PF07798_consen 58 AAIAELRSELQNSRKSEFAELRSENEKLQREIE 90 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444432 2333444444444444444
No 328
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=49.36 E-value=5.9e+02 Score=31.38 Aligned_cols=53 Identities=25% Similarity=0.175 Sum_probs=34.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhHhhHHHHHHhhh
Q 005704 501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKE-KIGVLTAELEKTKADNVQLYGKIRFVQD 560 (682)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~-~i~~lr~Ei~~Lk~DN~kLyEkiRylqs 560 (682)
.......-++.++||-+.+..+.++.-++... .....+...+..-. |+-|.+.
T Consensus 380 el~q~~a~~~~~lDe~~~~e~e~ee~~~~~~~D~~~E~r~~~Ea~e~-------k~~a~~q 433 (984)
T COG4717 380 ELKQTEAAYCKRLDEKRLFEDEAEEEARQRLADDEEEVRAGDEAREE-------KIAANSQ 433 (984)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhHHHHHhhhHHHHHH-------HHHhhcC
Confidence 45556777899999999987777776655443 33455555555555 7777543
No 329
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=49.34 E-value=4.5e+02 Score=29.92 Aligned_cols=66 Identities=6% Similarity=0.085 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH--HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005704 211 QDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEE--RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDE 287 (682)
Q Consensus 211 ~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee--~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~ 287 (682)
++++..++..++..+..+...+..|.+.+.+..-- .....+.+. -+..||.++-.++.+|....+.
T Consensus 241 ~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~-----------lI~~Le~qLa~~~aeL~~L~~~ 308 (434)
T PRK15178 241 KERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQ-----------LIAGFETQLAEAKAEYAQLMVN 308 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHhh
Confidence 45677777777777777777777777776665311 111111112 2334666666666666655443
No 330
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=48.86 E-value=4.3e+02 Score=29.63 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005704 255 LLMDEVERAQTRLLSLQ 271 (682)
Q Consensus 255 ~l~~DLEra~~R~~~LE 271 (682)
.+.+-+|.-+.|+.-+|
T Consensus 302 di~E~~Es~qtRisklE 318 (395)
T PF10267_consen 302 DIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445566677777777
No 331
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=48.50 E-value=4.6e+02 Score=29.80 Aligned_cols=11 Identities=36% Similarity=0.637 Sum_probs=7.9
Q ss_pred hhhccCCCCHH
Q 005704 110 QKLYEAPDPYP 120 (682)
Q Consensus 110 ~~L~eaPDP~P 120 (682)
+...++|||.|
T Consensus 56 ~~~~~~p~~~P 66 (630)
T KOG0742|consen 56 RGEGDRPDPAP 66 (630)
T ss_pred ccccCCCCCCc
Confidence 45667888877
No 332
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=48.38 E-value=6.2e+02 Score=31.34 Aligned_cols=144 Identities=21% Similarity=0.244 Sum_probs=77.0
Q ss_pred hhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh-HHHHHHHHHHHH
Q 005704 301 YLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKM-VDDLRKKVKILQ 379 (682)
Q Consensus 301 ~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sD-yeelK~EL~~Lk 379 (682)
.++.++...+.+...|..+....-..-..+...+...+..|+.++..++......-+-+...+...+ ..-++.|+.+++
T Consensus 513 ~le~e~~~le~E~~~l~~el~~~~~~~~kl~eer~qklk~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei~~~k 592 (913)
T KOG0244|consen 513 TLEAEKSPLESERSRLRNELNVFNRLAAKLGEERVQKLKSLETQISLLKKKLSSQRKLIKPKPKSEGIRAKLLQEIHIAK 592 (913)
T ss_pred hHHHHhcccccccHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHHHHHHHhhHHHHHHhccchhhHHHHHHHHHHHHHHH
Confidence 3444455555556666666555554444555556666777777777776666555555444432333 667888888887
Q ss_pred h--ccccCccchhhhh--hcchhhhchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 380 A--VGYNSIEAEDWEV--ATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAK 445 (682)
Q Consensus 380 ~--iEf~~~d~~~~~~--a~~~~~~~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~e 445 (682)
. +++....-.|.+. +......+.+ .+|..+-++.++++..+...+.....=+..-..+...++..
T Consensus 593 ~~kv~l~~~~~~d~ekfr~~K~~~~Ke~-~qlk~~~rk~~~~~~~~~~l~~~q~~vl~~kt~eas~~~kr 661 (913)
T KOG0244|consen 593 GQKVQLLRVMKEDAEKFRQWKDRTEKEW-NQLKGQERKSEGEHPKLEVLVKKQNYVLQRKTEEASAANKR 661 (913)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHhccchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 3443332211110 0000011122 23666667777777777766665555554444444444444
No 333
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=47.91 E-value=1.2e+02 Score=25.78 Aligned_cols=52 Identities=21% Similarity=0.382 Sum_probs=34.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005704 407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS 465 (682)
Q Consensus 407 Ll~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~ 465 (682)
|+..||.|... +.+.+.+++.+..-+..+..++.....++.+|+.++...+.
T Consensus 3 Li~qNk~L~~k-------L~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~ 54 (76)
T PF11544_consen 3 LIKQNKELKKK-------LNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQR 54 (76)
T ss_dssp ---HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556655544 44555556666666777777888888888888888877664
No 334
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=47.71 E-value=3e+02 Score=27.55 Aligned_cols=69 Identities=16% Similarity=0.286 Sum_probs=36.2
Q ss_pred HHHHhhhhccCCCCHHHHHHHHH--------HHhhhhhhHHhhHHH-----HHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 005704 105 FLNIYQKLYEAPDPYPALASIAE--------QDLKLSELESENRKM-----KIELEEYRTEATHLKNQQSTIRRLEERNR 171 (682)
Q Consensus 105 Fl~~Y~~L~eaPDP~PlLe~s~~--------~~~~~~~le~E~~kL-----~~el~~l~~el~~lknq~~~~~~Lkerl~ 171 (682)
-..||+.+-.-|-=.|+.+..-+ ....-..+-+.+.+| +..+..+.+-|+.+...-=++.-|..|+.
T Consensus 17 ~mevfk~vPQ~PHF~pL~~~~e~~REg~A~Glm~~f~~l~e~v~~l~idd~~~~f~~~~~tl~~LE~~GFnV~~l~~RL~ 96 (190)
T PF05266_consen 17 SMEVFKKVPQSPHFSPLQEFKEELREGMAVGLMVTFANLAEKVKKLQIDDSRSSFESLMKTLSELEEHGFNVKFLRSRLN 96 (190)
T ss_pred HHHHHHcCCCCCCChhhhcCcHHhhhHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 46788887777766887654322 211111233344444 24455555556665544335556666665
Q ss_pred HH
Q 005704 172 QL 173 (682)
Q Consensus 172 ~l 173 (682)
+|
T Consensus 97 kL 98 (190)
T PF05266_consen 97 KL 98 (190)
T ss_pred HH
Confidence 54
No 335
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=47.50 E-value=2.3e+02 Score=26.03 Aligned_cols=46 Identities=17% Similarity=0.277 Sum_probs=27.3
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 403 MESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINE 448 (682)
Q Consensus 403 LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~ 448 (682)
+|.-+-+..+-+...+..+......++..+..++.++..+...++.
T Consensus 81 vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~ 126 (129)
T cd00584 81 VEKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQE 126 (129)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666666666666666666666655555443
No 336
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=47.47 E-value=4.1e+02 Score=28.98 Aligned_cols=31 Identities=13% Similarity=0.275 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 005704 212 DQLRQAKDSVATMQKLHELAQSQLFEVRAQS 242 (682)
Q Consensus 212 ~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~ 242 (682)
+.+.-++.++..++..++..+..|.+.+.++
T Consensus 170 ~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~ 200 (362)
T TIGR01010 170 DTIAFAENEVKEAEQRLNATKAELLKYQIKN 200 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444455555555555555666666665554
No 337
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=47.35 E-value=2.7e+02 Score=26.77 Aligned_cols=61 Identities=23% Similarity=0.259 Sum_probs=36.7
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005704 402 KMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKG 463 (682)
Q Consensus 402 ~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~ 463 (682)
.+++ |+.+++.|+..|+....++..|+.++...+..+..-...+..++.-+..++..+...
T Consensus 21 ~~e~-ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~ 81 (160)
T PF13094_consen 21 DYEQ-LLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEE 81 (160)
T ss_pred cHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455 678888888888866666666666655555555555555555555554444444433
No 338
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=47.33 E-value=4.6e+02 Score=29.48 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005704 258 DEVERAQTRLLSLQREKDLLRSQLQS 283 (682)
Q Consensus 258 ~DLEra~~R~~~LE~e~E~Lr~eL~~ 283 (682)
++++.++.++++.++..+.++.|+..
T Consensus 13 qr~~~~~~~laq~~k~~s~~~aq~~~ 38 (459)
T KOG0288|consen 13 QRLIDLNTELAQCEKAQSRLSAQLVI 38 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555543
No 339
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=46.97 E-value=1.3e+02 Score=34.85 Aligned_cols=29 Identities=28% Similarity=0.221 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 254 NLLMDEVERAQTRLLSLQREKDLLRSQLQ 282 (682)
Q Consensus 254 e~l~~DLEra~~R~~~LE~e~E~Lr~eL~ 282 (682)
+.+...+.....++.+++++.+.|+.+|+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 162 (525)
T TIGR02231 134 DFNGSEIERLLTEDREAERRIRELEKQLS 162 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443333
No 340
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.19 E-value=3.5e+02 Score=27.80 Aligned_cols=137 Identities=9% Similarity=0.128 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHhhhcccccccccCC--CCccccccCCCC
Q 005704 506 LKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNNEKVISRGS--KKYAEDLESGFT 583 (682)
Q Consensus 506 L~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRylqsy~~~~~~~~~~--~~~~~~~~~~~~ 583 (682)
=+.+..+..|-|.......++.++....+.+++.....|-+ --.+..+|+..+....+- -+-...+..+ .
T Consensus 84 ~aa~~htL~RHrEILqdy~qef~rir~n~~a~~e~~~Ll~s-------~~~~~~~~~~~~~~~~~e~~lkE~~~in~s-~ 155 (231)
T KOG3208|consen 84 SAAVMHTLQRHREILQDYTQEFRRIRSNIDAKRERESLLES-------VRADISSYPSASGFNRGEMYLKEHDHINNS-I 155 (231)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhhhccCCccCCCchHHHHHHHhccccch-H
Confidence 35677888888999999999999999999988887766665 334446665432221100 0000001000 1
Q ss_pred chhhHHHHHhhhhhcChhhhhhHhH--HHHH-------hhhcCcchhHHHhhhhhhhcchhhHHHHHHHHHHHHHHHHHH
Q 005704 584 SDIESKYKKMYEDDINPFAAFSKKE--RDQR-------YKELGIRDRITLSSGRFLLGNKYARTFAFFYTILLHVLVFTC 654 (682)
Q Consensus 584 ~d~e~~Y~~~YE~~L~Pf~~F~~~E--~~r~-------~~~l~~~er~~l~~~r~vl~nr~~R~~f~~Y~~~LH~lv~~~ 654 (682)
--+.+--+.+|+..= .|..+= --.. -++.|.+--++ .=...|..|.-|+.=.|+--|++|+.
T Consensus 156 ~~vde~Is~A~aTre----~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll-----~kIk~kkrrdslILa~Vis~C~llll 226 (231)
T KOG3208|consen 156 RLVDELISQAQATRE----NLHSQRSVLGGINNKVNNIANRFPAINQLL-----QKIKIKKRRDSLILAAVISVCTLLLL 226 (231)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHhcchHHHHH-----HHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 112333444554321 111110 0001 11222211111 11345778888999899889999999
Q ss_pred HHHHh
Q 005704 655 LYRMS 659 (682)
Q Consensus 655 ly~~~ 659 (682)
+||++
T Consensus 227 fy~~~ 231 (231)
T KOG3208|consen 227 FYWIN 231 (231)
T ss_pred HHHhC
Confidence 99874
No 341
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=44.83 E-value=3.3e+02 Score=27.15 Aligned_cols=28 Identities=18% Similarity=0.398 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005704 257 MDEVERAQTRLLSLQREKDLLRSQLQSA 284 (682)
Q Consensus 257 ~~DLEra~~R~~~LE~e~E~Lr~eL~~a 284 (682)
...+++.+..+..++.+...|+.+|+.+
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444555555444
No 342
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=44.58 E-value=3.5e+02 Score=27.32 Aligned_cols=49 Identities=20% Similarity=0.137 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhhcc
Q 005704 417 ELTQLKVKLSEKTSLLETAEGKIAEL--------TAKINEQQKLIQKLEDDILKGYS 465 (682)
Q Consensus 417 eLt~LR~~~~~l~~~l~~l~~~~~~l--------~~el~~~~~l~~kLE~DL~~~~~ 465 (682)
|...|+.++.+|+..+...+...... .---.+++.|....+..|....+
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~ 153 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEE 153 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 44556666666666666666655541 11134566777777777766643
No 343
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=44.25 E-value=4.8e+02 Score=28.86 Aligned_cols=43 Identities=26% Similarity=0.304 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 192 LAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQ 234 (682)
Q Consensus 192 l~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~e 234 (682)
+..++.+-.+++..||+-+..|++.+-.+.+.++..+...+.+
T Consensus 246 l~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~ 288 (359)
T PF10498_consen 246 LQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEK 288 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 5567777778889999999888877766666666555544433
No 344
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=44.03 E-value=2.1e+02 Score=24.58 Aligned_cols=47 Identities=17% Similarity=0.303 Sum_probs=31.7
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 302 LENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEK 348 (682)
Q Consensus 302 le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~ 348 (682)
.+..+.+.-.++..+..-+-.|+......+..+..+|..|..+|+..
T Consensus 30 ~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~r 76 (79)
T PF08581_consen 30 YEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQR 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444444566677777777777888888888888888776653
No 345
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=43.99 E-value=5e+02 Score=28.93 Aligned_cols=61 Identities=28% Similarity=0.177 Sum_probs=37.1
Q ss_pred hchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhc
Q 005704 400 MSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKI----NEQQKLIQKLEDDILKGY 464 (682)
Q Consensus 400 ~~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el----~~~~~l~~kLE~DL~~~~ 464 (682)
.--||.||.=| +++|.=|+..+..+..+++....+..-...++ .++.-...+-+.||..+.
T Consensus 507 ayELEVLLRVK----EsEiQYLKqEissLkDELQtalrDKkyaSdKYkDiYtELSiaKakadcdIsrLK 571 (593)
T KOG4807|consen 507 AYELEVLLRVK----ESEIQYLKQEISSLKDELQTALRDKKYASDKYKDIYTELSIAKAKADCDISRLK 571 (593)
T ss_pred hhhHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHhhhccHHHHH
Confidence 45688887555 56777888888888888887776654444332 223333344445555444
No 346
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.93 E-value=96 Score=25.87 Aligned_cols=41 Identities=12% Similarity=0.148 Sum_probs=31.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKIN 447 (682)
Q Consensus 407 Ll~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~ 447 (682)
|.+||..|+++...++.....+..+.++++.+.......+.
T Consensus 30 LKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlr 70 (79)
T COG3074 30 LKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLR 70 (79)
T ss_pred HHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888888888888888888777776665543
No 347
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=43.92 E-value=1.9e+02 Score=24.10 Aligned_cols=33 Identities=21% Similarity=0.241 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005704 251 SEVNLLMDEVERAQTRLLSLQREKDLLRSQLQS 283 (682)
Q Consensus 251 aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~ 283 (682)
.|-++...-|-.|...+..|..+++.|+.+|..
T Consensus 33 ~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 33 RERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555566666666666666553
No 348
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=43.83 E-value=1.8e+02 Score=23.76 Aligned_cols=44 Identities=27% Similarity=0.318 Sum_probs=27.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 412 RKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQK 455 (682)
Q Consensus 412 rkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~k 455 (682)
-.++.+|+..+..+...+.++.........+..++..++..+..
T Consensus 14 Q~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 14 QAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777766666666666666666666666655554444
No 349
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=43.79 E-value=3.6e+02 Score=27.33 Aligned_cols=25 Identities=32% Similarity=0.329 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 005704 260 VERAQTRLLSLQREKDLLRSQLQSA 284 (682)
Q Consensus 260 LEra~~R~~~LE~e~E~Lr~eL~~a 284 (682)
.+--+.++..++.++..||..+..+
T Consensus 82 a~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 82 AELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 3334556777888899999998887
No 350
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=43.74 E-value=3.7e+02 Score=27.38 Aligned_cols=38 Identities=16% Similarity=0.261 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 005704 141 KMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEE 179 (682)
Q Consensus 141 kL~~el~~l~~el~~lknq~~~~~~Lkerl~~lE~~~e~ 179 (682)
.|+..+...-..++++++ |..|.+||..+..+|..++.
T Consensus 13 ~lq~~i~~as~~lNd~TG-Ys~Ie~LK~~i~~~E~~l~~ 50 (207)
T PF05546_consen 13 SLQETIFTASQALNDVTG-YSEIEKLKKSIEELEDELEA 50 (207)
T ss_pred HHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHHHH
Confidence 444445545555555555 66778888777666666533
No 351
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=43.62 E-value=1.3e+02 Score=24.82 Aligned_cols=44 Identities=25% Similarity=0.280 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 005704 423 VKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSS 466 (682)
Q Consensus 423 ~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~ 466 (682)
..+.+|+.++.-.+.-+..|+..+..+...|.+|+..+..+...
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~r 47 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRER 47 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666666666666666543
No 352
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=43.41 E-value=2.7e+02 Score=25.64 Aligned_cols=41 Identities=24% Similarity=0.215 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHH
Q 005704 515 RFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKI 555 (682)
Q Consensus 515 Rfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEki 555 (682)
-.|.+..|+|.-..+.-+.|..|.+|.+.|+..|-+|.|-+
T Consensus 79 ~akK~qqefe~s~~qsLq~i~~L~nE~n~L~eEN~~L~eEl 119 (120)
T PF10482_consen 79 LAKKKQQEFESSHLQSLQHIFELTNEMNTLKEENKKLKEEL 119 (120)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 34677888998888888999999999999999999998865
No 353
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=43.31 E-value=88 Score=35.89 Aligned_cols=57 Identities=25% Similarity=0.386 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhhhhhHhhHHHHHHhhhcccc
Q 005704 508 VICNQRDRFRARLRETEEEVRQLKEKIGV---------LTAELEKTKADNVQLYGKIRFVQDYNNE 564 (682)
Q Consensus 508 Ivt~QRDRfr~r~~ELE~el~~~~~~i~~---------lr~Ei~~Lk~DN~kLyEkiRylqsy~~~ 564 (682)
-..-|+.=++.|+.+|++++....+.+.. ++.+++.+...--.|.+++.+|+.+-..
T Consensus 160 p~~vQ~~L~~~Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~ 225 (475)
T PF10359_consen 160 PRRVQIELIQERLDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLENMLED 225 (475)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667888899999999999999998887 4677888888888888899999998643
No 354
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=43.27 E-value=3.9e+02 Score=27.58 Aligned_cols=38 Identities=16% Similarity=0.323 Sum_probs=24.3
Q ss_pred cHHHHHhhHHHHHHhHHHHHHHhhhhhhhHHHHHHHhh
Q 005704 73 PEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQ 110 (682)
Q Consensus 73 ~eekl~~~~~LLK~yQ~EID~LTkRsK~aE~aFl~~Y~ 110 (682)
+..||+.+..=+..|...+-.=++--+..|...+...+
T Consensus 3 ~~~KL~~i~e~~~~f~~~le~e~~~Rr~~ee~r~~~i~ 40 (247)
T PF06705_consen 3 TKSKLASINERFSGFESDLENEKRQRREQEEQRFQDIK 40 (247)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45677777777777777776555555566655554433
No 355
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=43.17 E-value=2.1e+02 Score=24.50 Aligned_cols=36 Identities=17% Similarity=0.212 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 426 SEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDIL 461 (682)
Q Consensus 426 ~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~ 461 (682)
..|+.++++.-..+.-+.-++++++..|..|.....
T Consensus 7 eqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~ 42 (79)
T PRK15422 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQ 42 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666666666666666655543
No 356
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=42.74 E-value=1.9e+02 Score=33.86 Aligned_cols=19 Identities=26% Similarity=0.424 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 005704 503 SSMLKVICNQRDRFRARLR 521 (682)
Q Consensus 503 ~siL~Ivt~QRDRfr~r~~ 521 (682)
..+-..+++|.++|+.++.
T Consensus 516 ~a~~~~~~~~~~~~~~~l~ 534 (555)
T TIGR03545 516 KAFKKEIAAQIEKAKAKLK 534 (555)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455677888888887754
No 357
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=42.74 E-value=1.2e+02 Score=25.15 Aligned_cols=44 Identities=23% Similarity=0.277 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHH
Q 005704 514 DRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRF 557 (682)
Q Consensus 514 DRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRy 557 (682)
-..+..+.+|+.++..+..+...|+.+++.|+.|---+-+..|.
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~ 63 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVARE 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 35567788888888888888888888888886655555555553
No 358
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=42.65 E-value=1.3e+02 Score=29.23 Aligned_cols=47 Identities=13% Similarity=0.222 Sum_probs=30.6
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 404 ESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQ 450 (682)
Q Consensus 404 E~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~ 450 (682)
...|..-|++|..+++.|+.++..|+.+++.+.+++...+.++..+-
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~ 145 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLI 145 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466667777777777777777777776666666666655555443
No 359
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=42.28 E-value=1.1e+02 Score=32.22 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 252 EVNLLMDEVERAQTRLLSLQREKDLL 277 (682)
Q Consensus 252 Ele~l~~DLEra~~R~~~LE~e~E~L 277 (682)
...++..++++....+.+||++...|
T Consensus 233 ~~~~~de~I~rEeeEIreLE~k~~~L 258 (259)
T PF08657_consen 233 DSVDTDEDIRREEEEIRELERKKREL 258 (259)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhc
Confidence 34688889999999999999987765
No 360
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=42.00 E-value=3.1e+02 Score=31.32 Aligned_cols=39 Identities=10% Similarity=0.166 Sum_probs=26.5
Q ss_pred chHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 401 SKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIA 440 (682)
Q Consensus 401 ~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~ 440 (682)
++|-. |+.+.|.+..++..+..++..+..+.+.|++...
T Consensus 59 DTlrT-lva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~ 97 (472)
T TIGR03752 59 DTLRT-LVAEVKELRKRLAKLISENEALKAENERLQKREQ 97 (472)
T ss_pred chHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444 7778888888877777777777777666654433
No 361
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=41.85 E-value=4.3e+02 Score=27.55 Aligned_cols=16 Identities=38% Similarity=0.393 Sum_probs=6.1
Q ss_pred hhHHHHHHHHHHHHHH
Q 005704 138 ENRKMKIELEEYRTEA 153 (682)
Q Consensus 138 E~~kL~~el~~l~~el 153 (682)
.+..++.+++.++.++
T Consensus 28 ~l~~~~~~~~~l~~~i 43 (302)
T PF10186_consen 28 ELQQLKEENEELRRRI 43 (302)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333343333333333
No 362
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=41.78 E-value=5.7e+02 Score=28.97 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh
Q 005704 266 RLLSLQREKDLLRSQLQSANDEA 288 (682)
Q Consensus 266 R~~~LE~e~E~Lr~eL~~a~s~~ 288 (682)
.+.+++.+...|+.++..+....
T Consensus 237 ~~~~~~~~i~~l~~~i~~~~~~~ 259 (457)
T TIGR01000 237 ILATIQQQIDQLQKSIASYQVQK 259 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777666554
No 363
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=41.77 E-value=3.4e+02 Score=26.45 Aligned_cols=32 Identities=19% Similarity=0.456 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 508 VICNQRDRFRARLRETEEEVRQLKEKIGVLTA 539 (682)
Q Consensus 508 Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~ 539 (682)
-|..=-++-...+.+|+..+....+++..+..
T Consensus 142 ~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~ 173 (177)
T PF13870_consen 142 ALLRDYDKTKEEVEELRKEIKELERKVEILEM 173 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333555566666666666666666555544
No 364
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.59 E-value=1.9e+02 Score=24.23 Aligned_cols=52 Identities=13% Similarity=0.219 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHh
Q 005704 507 KVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFV 558 (682)
Q Consensus 507 ~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRyl 558 (682)
..+.=..+.++.+|..|-.+..........|.++-..|+..--.--|++|-|
T Consensus 21 ~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 21 TLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556777777777777777777777777777777777666666666654
No 365
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.48 E-value=1.1e+02 Score=25.65 Aligned_cols=43 Identities=21% Similarity=0.257 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHh
Q 005704 516 FRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFV 558 (682)
Q Consensus 516 fr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRyl 558 (682)
|..|+.+||-.+.-+.++|..|-.-+...+..=-++-.++|||
T Consensus 6 lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L 48 (72)
T COG2900 6 LEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLL 48 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888888887777655555444444444477775
No 366
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=41.16 E-value=3e+02 Score=25.57 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 513 RDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 513 RDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
.+.++.|..-||-++..+.++...++.+++.|++
T Consensus 72 ~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~ 105 (119)
T COG1382 72 VDELEERKETLELRIKTLEKQEEKLQERLEELQS 105 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666666666666
No 367
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=41.05 E-value=28 Score=25.28 Aligned_cols=18 Identities=33% Similarity=0.561 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005704 638 TFAFFYTILLHVLVFTCL 655 (682)
Q Consensus 638 ~~f~~Y~~~LH~lv~~~l 655 (682)
++|=||+-+|.+|+|+++
T Consensus 5 tl~dfylc~l~~llflv~ 22 (43)
T PF11395_consen 5 TLFDFYLCFLSFLLFLVI 22 (43)
T ss_pred ehhHHHHHHHHHHHHHHH
Confidence 456677766666555443
No 368
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=40.94 E-value=90 Score=35.59 Aligned_cols=49 Identities=14% Similarity=0.264 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHH
Q 005704 261 ERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETAL 327 (682)
Q Consensus 261 Era~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L 327 (682)
+..+.++.+||++++.||.++...... +...+.+|..|++++..|+..+
T Consensus 72 teqQ~kasELEKqLaaLrqElq~~saq------------------~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 72 TEMQVTAAQMQKQYEEIRRELDVLNKQ------------------RGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh------------------hhhHHHHHHHHHHHHHHHHHHH
Confidence 334556777777777776665422111 2222444666666666666554
No 369
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=40.86 E-value=1.6e+02 Score=27.87 Aligned_cols=49 Identities=22% Similarity=0.316 Sum_probs=12.6
Q ss_pred hhccCCCC---HHHHHHHHHH-HhhhhhhHHhhHHHHHHHHHHHHHHHHhhhh
Q 005704 111 KLYEAPDP---YPALASIAEQ-DLKLSELESENRKMKIELEEYRTEATHLKNQ 159 (682)
Q Consensus 111 ~L~eaPDP---~PlLe~s~~~-~~~~~~le~E~~kL~~el~~l~~el~~lknq 159 (682)
.+.+=||| +|++-...+. ..++..-..++..++.-+..+.+++..+...
T Consensus 14 A~~~nPdP~~~~Pv~i~GF~dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~ 66 (141)
T PF13874_consen 14 ALRDNPDPSRLIPVPIIGFEDLKKRVEAQEEEIAQHRERLKEINDKLEELQKH 66 (141)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCcCCcCeeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34678999 6766554443 2333333345555666666666666666433
No 370
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=40.25 E-value=81 Score=25.20 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHh
Q 005704 519 RLRETEEEVRQLKEKIGVLTAELEKTKADNVQ 550 (682)
Q Consensus 519 r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~k 550 (682)
|+.+||.++......+..++.|...++.+.-+
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~ 32 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEK 32 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666665555554333
No 371
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=39.97 E-value=63 Score=35.06 Aligned_cols=45 Identities=11% Similarity=0.144 Sum_probs=32.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 502 QSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 502 ~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
-.+-+.-+.+..+-....+.-|.-.+..+.-.|..|+..++.|.+
T Consensus 110 h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs 154 (326)
T PF04582_consen 110 HSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALES 154 (326)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhc
Confidence 344455666677777888888888999999999999999999988
No 372
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=39.75 E-value=1.5e+02 Score=36.53 Aligned_cols=65 Identities=20% Similarity=0.282 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 139 NRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLRQA 217 (682)
Q Consensus 139 ~~kL~~el~~l~~el~~lknq~~~~~~Lkerl~~lE~~~e~~~~~~~~~~E~el~~~~eek~~~~~ere~~L~~ql~~a 217 (682)
+..||+|+++|...+.... ......+++++.+.++=+ ++++..|+|+.++.+.-..+++.+|+.+
T Consensus 366 irElReEve~lr~qL~~ae--~~~~~el~e~l~esekli------------~ei~~twEEkl~ktE~in~erq~~L~~~ 430 (1714)
T KOG0241|consen 366 IRELREEVEKLREQLEQAE--AMKLPELKEKLEESEKLI------------KEITVTWEEKLRKTEEINQERQAQLESM 430 (1714)
T ss_pred HHHHHHHHHHHHHHHhhhh--hccchHHHHHHHHHHHHH------------HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555544411 223444555554443322 3455667777776666666666655543
No 373
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=39.70 E-value=5.2e+02 Score=27.91 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=20.4
Q ss_pred HHHhhhHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 187 IKQRGLAE---------ENQKTLEILQEREQALQDQLRQAKDS 220 (682)
Q Consensus 187 ~~E~el~~---------~~eek~~~~~ere~~L~~ql~~ae~~ 220 (682)
.+-++|.+ +|-+..|-|++..+.|.++|..+++.
T Consensus 95 vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLAiaERt 137 (351)
T PF07058_consen 95 VVANEWKDENDKVMPVKQWLEERRFLQGEMQQLRDKLAIAERT 137 (351)
T ss_pred hhcccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667765 36666666666666666666555543
No 374
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=39.69 E-value=3.2e+02 Score=25.57 Aligned_cols=33 Identities=18% Similarity=0.262 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 250 QSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQ 282 (682)
Q Consensus 250 ~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~ 282 (682)
..++..+..|++..+..+..+..-+..|...|.
T Consensus 88 ~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~ 120 (126)
T PF07889_consen 88 KDEVTEVREDVSQIGDDVDSVQQMVEGLEGKID 120 (126)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555554443
No 375
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=39.60 E-value=6.8e+02 Score=29.26 Aligned_cols=70 Identities=13% Similarity=0.250 Sum_probs=36.0
Q ss_pred hhhHHHHHHHHHHHHhccccCccchhhhhhcchhhhchHHHHHHHHhhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 005704 365 SKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKV---KLSEKTSLLETAEGKIAE 441 (682)
Q Consensus 365 ~sDyeelK~EL~~Lk~iEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~LR~---~~~~l~~~l~~l~~~~~~ 441 (682)
+..+++|...|..++.+.=-. +.+++. ++..-.+++.++..+.. .+..++.++..+..++..
T Consensus 300 p~~L~ele~RL~~l~~LkrKy--------------g~s~e~-l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~ 364 (563)
T TIGR00634 300 PERLNEIEERLAQIKRLKRKY--------------GASVEE-VLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDK 364 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--------------CCCHHH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888887652111 123333 23333444444444332 345555555555555555
Q ss_pred HHHHHHHH
Q 005704 442 LTAKINEQ 449 (682)
Q Consensus 442 l~~el~~~ 449 (682)
+-.++...
T Consensus 365 ~a~~Ls~~ 372 (563)
T TIGR00634 365 AAVALSLI 372 (563)
T ss_pred HHHHHHHH
Confidence 55555544
No 376
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=39.52 E-value=4.2e+02 Score=26.88 Aligned_cols=47 Identities=23% Similarity=0.285 Sum_probs=29.1
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 410 KNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKL 456 (682)
Q Consensus 410 kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kL 456 (682)
+-..++..+..|..++..+...+..+...+..++.++.+.+.--..|
T Consensus 93 ~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l 139 (219)
T TIGR02977 93 EKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKAL 139 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666666666666655554444
No 377
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=39.37 E-value=3.8e+02 Score=27.79 Aligned_cols=35 Identities=20% Similarity=0.191 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 202 ILQEREQALQDQLRQAKDSVATMQKLHELAQSQLF 236 (682)
Q Consensus 202 ~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~ 236 (682)
.+..+...|+++-+.+-.+..+|...++-...+|.
T Consensus 108 ~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~ 142 (292)
T KOG4005|consen 108 ILQNENDSLRAINESLLAKNHELDSELELLRQELA 142 (292)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444333333
No 378
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=39.37 E-value=4.3e+02 Score=26.84 Aligned_cols=57 Identities=28% Similarity=0.363 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHH
Q 005704 268 LSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETAL 327 (682)
Q Consensus 268 ~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L 327 (682)
..||++++.||.+=...+...... .....+.|-..|..++..|-.|+.++..++.+.
T Consensus 31 ~~lE~EL~~lr~qq~~~~~~~~~~---~~~~~~~L~~~LrEkEErILaLEad~~kWEqkY 87 (205)
T PF12240_consen 31 TRLERELESLRAQQRQGNSSGSSS---PSNNASNLKELLREKEERILALEADMTKWEQKY 87 (205)
T ss_pred HHHHHHHHHHHHhhccCCCCCCCC---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899999998754433332221 113455677778999999999999999998874
No 379
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=39.29 E-value=1.6e+02 Score=24.39 Aligned_cols=51 Identities=10% Similarity=0.242 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHhh
Q 005704 509 ICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQ 559 (682)
Q Consensus 509 vt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRylq 559 (682)
+....+.+..+++=.+.-+..++..+...+.+|+.|+..--.|+++++-++
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566667777777777777777777778888888887667777777664
No 380
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=38.91 E-value=6.1e+02 Score=28.94 Aligned_cols=32 Identities=25% Similarity=0.126 Sum_probs=24.4
Q ss_pred HHhhhhhhh------HHHHHHHhhhhccCCCCHHHHHH
Q 005704 93 NLTKRAKFG------ENAFLNIYQKLYEAPDPYPALAS 124 (682)
Q Consensus 93 ~LTkRsK~a------E~aFl~~Y~~L~eaPDP~PlLe~ 124 (682)
.||||-|.| |+=|+--|+++..-|||.-+...
T Consensus 357 qLTk~~KnAAA~VLqeTW~i~K~trl~~k~~~~rlR~h 394 (489)
T KOG3684|consen 357 QLTKEHKNAAANVLQETWLIYKHTKLVSKGDQARLRKH 394 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHH
Confidence 589999987 66677778888888888776433
No 381
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=38.71 E-value=1.7e+02 Score=28.30 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005704 254 NLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEA 288 (682)
Q Consensus 254 e~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~ 288 (682)
.....+++..+.++..+..++..|+.+|..+....
T Consensus 9 ~~~gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i 43 (155)
T PF06810_consen 9 AENGKDIEAPKAKVDKVKEERDNLKTQLKEADKQI 43 (155)
T ss_pred HHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666677777778888888888887766554
No 382
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=38.67 E-value=8.3e+02 Score=29.97 Aligned_cols=37 Identities=11% Similarity=0.257 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005704 250 QSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAND 286 (682)
Q Consensus 250 ~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s 286 (682)
.-+++++..|......+....-...|.|..+++--++
T Consensus 838 a~dfe~IIed~dc~~eit~ee~eqkElLele~E~egk 874 (1424)
T KOG4572|consen 838 ARDFEIIIEDGDCLKEITKEEGEQKELLELELENEGK 874 (1424)
T ss_pred hHHHHHHHhhhHHHHHHHHHhhhhHHHHHHhhhcccc
Confidence 4578899999999888888888888888887765443
No 383
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=38.44 E-value=6.8e+02 Score=30.67 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=10.6
Q ss_pred cCCcHHHHHhhHHHHHHh
Q 005704 70 KASPEEKLSLFNSLLKGY 87 (682)
Q Consensus 70 k~~~eekl~~~~~LLK~y 87 (682)
-+++.+...-...+|+.+
T Consensus 414 GtD~~eg~ala~aiLe~l 431 (771)
T TIGR01069 414 GTDPDEGSALAISILEYL 431 (771)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 355566665556666654
No 384
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=38.39 E-value=2.1e+02 Score=23.63 Aligned_cols=46 Identities=15% Similarity=0.130 Sum_probs=32.7
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 402 KMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINE 448 (682)
Q Consensus 402 ~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~ 448 (682)
.++. |+.+-.+|..++..||.+...+..+-..+........+.++.
T Consensus 8 kle~-Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEa 53 (65)
T TIGR02449 8 QVEH-LLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEA 53 (65)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566 777777788888888888877777777776666666555544
No 385
>PRK02119 hypothetical protein; Provisional
Probab=38.37 E-value=1.6e+02 Score=24.84 Aligned_cols=45 Identities=22% Similarity=0.237 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005704 420 QLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY 464 (682)
Q Consensus 420 ~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~ 464 (682)
.+...+.+|+.++.-.+.-+..|+..+.++...|..|...|..+.
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~ 50 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMA 50 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666666666666666666666666554
No 386
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=38.26 E-value=3.1e+02 Score=27.40 Aligned_cols=17 Identities=18% Similarity=0.175 Sum_probs=11.6
Q ss_pred cCChhHHHhhHhHHHHH
Q 005704 30 DFDLEKEKSLLDELGLK 46 (682)
Q Consensus 30 ~~dl~~lq~~LD~~~~e 46 (682)
..|.-.|+..||..-..
T Consensus 32 R~dVi~L~e~Ld~~L~~ 48 (189)
T PF10211_consen 32 RQDVIQLQEWLDKMLQQ 48 (189)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45777788888865544
No 387
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=38.21 E-value=6.4e+02 Score=28.53 Aligned_cols=212 Identities=16% Similarity=0.156 Sum_probs=0.0
Q ss_pred CcHHHHHhhHHHHHHhHHHHHHHhhhhhhhHHHHHHHhhhhccCCCCHHHHHHHHHHHhh---------------hhhhH
Q 005704 72 SPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLK---------------LSELE 136 (682)
Q Consensus 72 ~~eekl~~~~~LLK~yQ~EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~~---------------~~~le 136 (682)
+.++..+.+..-+.+.+.+|+.++.=-..-.+++-.|-..+.+++-|.|.+.++-..... ....-
T Consensus 75 ~~d~vk~h~d~~i~~l~~~i~~~k~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (426)
T smart00806 75 ELDEVKKHIDDEIDTLQNELDEVKQALESQREAIQRLKERQQNSAANIARPAASPSPVLASSSSAISLANNPDKLNKEQR 154 (426)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhcccCcccccCCCCcccccccccccccCCCcccchhHH
Q ss_pred HhhHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 137 SENRKMKIELEEYRTEATHLKNQQS-TIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEILQEREQALQDQLR 215 (682)
Q Consensus 137 ~E~~kL~~el~~l~~el~~lknq~~-~~~~Lkerl~~lE~~~e~~~~~~~~~~E~el~~~~eek~~~~~ere~~L~~ql~ 215 (682)
.|+..|+.+++-++.-.+...+... ++..+++++.....-.-......=-+--...+..+...-.++-.+..+||+-++
T Consensus 155 ~el~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE 234 (426)
T smart00806 155 AELKSLQRELAVLRQTHNSFFTEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDIIE 234 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH------------HHHHHHHHHHHHHHHHHHHHhhhcchHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 216 QA------------KDSVATMQKLHELAQSQLFEVRAQSDEE----RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRS 279 (682)
Q Consensus 216 ~a------------e~~l~eL~~~le~~Q~eL~~l~~k~~ee----~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~ 279 (682)
.+ .++++.....+..+..+|..+..-...+ ...+..||+.+.++ ++-+.--|-=...|++
T Consensus 235 ~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEE----qqfL~lQedL~~DL~d 310 (426)
T smart00806 235 ALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEE----QQFLTLQEDLIADLKE 310 (426)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhh
Q 005704 280 QLQSANDE 287 (682)
Q Consensus 280 eL~~a~s~ 287 (682)
.|.++...
T Consensus 311 DL~ka~eT 318 (426)
T smart00806 311 DLEKAEET 318 (426)
T ss_pred HHHHHHHH
No 388
>PF15456 Uds1: Up-regulated During Septation
Probab=38.21 E-value=3.4e+02 Score=25.34 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 203 LQEREQALQDQLRQAKDSVATMQKL 227 (682)
Q Consensus 203 ~~ere~~L~~ql~~ae~~l~eL~~~ 227 (682)
+..+...+++++. ++.++.++-.+
T Consensus 34 L~~R~~~lr~kl~-le~k~RdAa~s 57 (124)
T PF15456_consen 34 LDSRLEYLRRKLA-LESKIRDAAHS 57 (124)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3444444444444 44444444333
No 389
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=38.19 E-value=8.3e+02 Score=29.89 Aligned_cols=33 Identities=18% Similarity=0.341 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005704 254 NLLMDEVERAQTRLLSLQREKDLLRSQLQSAND 286 (682)
Q Consensus 254 e~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s 286 (682)
=-+..|+++.+..+..|..+.-.+++++..+..
T Consensus 66 Pr~~~ev~~l~~ea~~L~~~~~~v~~~~~~~e~ 98 (766)
T PF10191_consen 66 PRVLREVDRLRQEAASLQEQMASVQEEIKAVEQ 98 (766)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 345556666666666666666666666654433
No 390
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=38.16 E-value=4.3e+02 Score=26.58 Aligned_cols=32 Identities=9% Similarity=0.237 Sum_probs=22.7
Q ss_pred HHhHHHHHHHhhhhhhhHHHHHHHhhhhccCC
Q 005704 85 KGYQEEVDNLTKRAKFGENAFLNIYQKLYEAP 116 (682)
Q Consensus 85 K~yQ~EID~LTkRsK~aE~aFl~~Y~~L~eaP 116 (682)
|.|=.-|-+++..++..=.+|-++|.++....
T Consensus 26 k~y~~a~~~l~~~~~~~~~~~~~ly~p~~~~~ 57 (216)
T cd07599 26 KAFRDSWRSILTHQIAFAKEFAELYDPIVGPK 57 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCC
Confidence 44555666667777777888999999876443
No 391
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=37.98 E-value=3e+02 Score=24.73 Aligned_cols=35 Identities=23% Similarity=0.288 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 194 EENQKTLEILQEREQALQDQLRQAKDSVATMQKLH 228 (682)
Q Consensus 194 ~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~l 228 (682)
..+..++..++.+.+.|.+++..++.++.+++..+
T Consensus 70 ~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l 104 (110)
T TIGR02338 70 QELKEKKETLELRVKTLQRQEERLREQLKELQEKI 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444454555444444444444444443
No 392
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=37.91 E-value=1e+02 Score=26.36 Aligned_cols=39 Identities=28% Similarity=0.362 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHhh
Q 005704 521 RETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQ 559 (682)
Q Consensus 521 ~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRylq 559 (682)
..||..+...-.+|.-|+-||+-||..|..|.+.+.-+.
T Consensus 7 eqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~ 45 (79)
T PRK15422 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQ 45 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888888888888888888888766543
No 393
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=37.82 E-value=4.6e+02 Score=26.73 Aligned_cols=18 Identities=33% Similarity=0.379 Sum_probs=10.2
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 005704 138 ENRKMKIELEEYRTEATH 155 (682)
Q Consensus 138 E~~kL~~el~~l~~el~~ 155 (682)
.+.+|+..+..++..+..
T Consensus 33 ~Ie~LK~~i~~~E~~l~~ 50 (207)
T PF05546_consen 33 EIEKLKKSIEELEDELEA 50 (207)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455566666655555555
No 394
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=37.56 E-value=62 Score=29.21 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005704 513 RDRFRARLRETEEEVRQLKEKIGVLTAELEKTKAD 547 (682)
Q Consensus 513 RDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~D 547 (682)
.-.+++++.+++.++..++.+...|+.+++.|+.|
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 34456677777777777777777888888888774
No 395
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=37.54 E-value=6.2e+02 Score=28.16 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh
Q 005704 327 LSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQA 380 (682)
Q Consensus 327 L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~ 380 (682)
...++.++..--..|..-+.+......+|+-.+.+. ..++.++.+++..|+.
T Consensus 235 ~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~--~~ei~~~e~~i~~L~~ 286 (384)
T PF03148_consen 235 ANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKT--LQEIAEMEKNIEDLEK 286 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHH
Confidence 334444444444666666777777778888888776 5778888888888885
No 396
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=37.41 E-value=1.6e+02 Score=26.95 Aligned_cols=51 Identities=20% Similarity=0.254 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHhh
Q 005704 509 ICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQ 559 (682)
Q Consensus 509 vt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRylq 559 (682)
|-.+.+.|.+.+..+-.++..++..+..+--|-..|+-.|-+|.+++.=++
T Consensus 6 lfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 6 IFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345666777777888888888888888888888888888888888988653
No 397
>PLN02939 transferase, transferring glycosyl groups
Probab=37.29 E-value=9.5e+02 Score=30.28 Aligned_cols=44 Identities=18% Similarity=0.227 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHh
Q 005704 507 KVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQ 550 (682)
Q Consensus 507 ~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~k 550 (682)
.-|+.-++||+....|+-.++.--...+...+.-++.|+..|-+
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (977)
T PLN02939 358 QKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEESKK 401 (977)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 56677778888888888888888888888888888888877665
No 398
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=37.16 E-value=5.9e+02 Score=27.86 Aligned_cols=72 Identities=14% Similarity=0.159 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005704 210 LQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEA 288 (682)
Q Consensus 210 L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~ 288 (682)
|+.|++--..+.+......+....+|.+-+.++++-+ -||..+--++-.++++.-...+++--.|+.-.+.+
T Consensus 151 L~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeqis-------~mLilEcKka~~KaaEegqKA~ei~Lklekdksr~ 222 (561)
T KOG1103|consen 151 LQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQIS-------LMLILECKKALLKAAEEGQKAEEIMLKLEKDKSRT 222 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhhHHHHHHhhccCcccc
Confidence 4445544444444344444444455555544443332 35555555566666666666677766666544443
No 399
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=37.00 E-value=5.7e+02 Score=27.61 Aligned_cols=29 Identities=14% Similarity=0.377 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 426 SEKTSLLETAEGKIAELTAKINEQQKLIQ 454 (682)
Q Consensus 426 ~~l~~~l~~l~~~~~~l~~el~~~~~l~~ 454 (682)
.-++..+..++.++..+..+|.....+|+
T Consensus 143 Er~K~~~d~L~~e~~~Lre~L~~rdeli~ 171 (302)
T PF09738_consen 143 ERQKRAHDSLREELDELREQLKQRDELIE 171 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555553
No 400
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=36.83 E-value=6.3e+02 Score=28.11 Aligned_cols=42 Identities=29% Similarity=0.589 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhHhhHHHHHHhhhccc
Q 005704 512 QRDRFRARLRETEEEVRQL----KEKIGVLTAELEKTKADNVQLYGKIRFVQDYNN 563 (682)
Q Consensus 512 QRDRfr~r~~ELE~el~~~----~~~i~~lr~Ei~~Lk~DN~kLyEkiRylqsy~~ 563 (682)
|=+|||. +-||++|+.. +.+|-.|++|++++.. ||-| |+|..
T Consensus 302 QEERyR~--erLEEqLNdlteLqQnEi~nLKqElasmee-------rvaY-QsyER 347 (455)
T KOG3850|consen 302 QEERYRY--ERLEEQLNDLTELQQNEIANLKQELASMEE-------RVAY-QSYER 347 (455)
T ss_pred HHHHHHH--HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------HHHH-HHHHH
Confidence 4455543 4566666543 4455556666655555 8888 56654
No 401
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=36.55 E-value=5.4e+02 Score=27.24 Aligned_cols=48 Identities=15% Similarity=0.266 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhccccCcc
Q 005704 338 IKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIE 387 (682)
Q Consensus 338 ~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~iEf~~~d 387 (682)
+.++..+|.+.....+.|..+++.. ..+|+..++.|..|++|.=+..|
T Consensus 121 ~q~~~~~Lnnvasdea~L~~Kierr--k~ElEr~rkRle~LqsiRP~~Md 168 (338)
T KOG3647|consen 121 LQSSRAQLNNVASDEAALGSKIERR--KAELERTRKRLEALQSIRPAHMD 168 (338)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcchHHHH
Confidence 3444555556666667777777776 67899999999999999666654
No 402
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=36.46 E-value=29 Score=31.97 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=15.2
Q ss_pred hHHhhHHHHHHHHHHHHHHHHhhhhHHHH
Q 005704 135 LESENRKMKIELEEYRTEATHLKNQQSTI 163 (682)
Q Consensus 135 le~E~~kL~~el~~l~~el~~lknq~~~~ 163 (682)
+..++..|..++..|+.++..+..+...+
T Consensus 30 l~~~~~~l~~e~~~L~~~~~~l~~~l~~~ 58 (131)
T PF05103_consen 30 LAEELERLQRENAELKEEIEELQAQLEEL 58 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 44456666666666666666665554443
No 403
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=36.33 E-value=3.1e+02 Score=24.32 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=14.0
Q ss_pred hHHhhHHHHHHHHHHHHHHHHhhhh
Q 005704 135 LESENRKMKIELEEYRTEATHLKNQ 159 (682)
Q Consensus 135 le~E~~kL~~el~~l~~el~~lknq 159 (682)
+..++..|+.+-+.+.+++..++.+
T Consensus 41 l~~~~e~lr~~rN~~sk~I~~~~~~ 65 (108)
T PF02403_consen 41 LQQELEELRAERNELSKEIGKLKKA 65 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhhC
Confidence 4445555665555555566555544
No 404
>cd07608 BAR_ArfGAP_fungi The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized fungal Arf GAP proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of uncharacterized fungal proteins containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and an Arf GTPase Activating Protein (GAP) domain. These proteins may play roles in Arf-mediated functions involving membrane dynamics. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=36.15 E-value=1.2e+02 Score=30.51 Aligned_cols=61 Identities=18% Similarity=0.167 Sum_probs=46.4
Q ss_pred HHHHHHhHHhhcCCcHHHHHhhHHHHHHhHHHHHHHhhhhhhhHHHHHHHhhhhccCCCCHHHHHHHHHHHh
Q 005704 59 RKLAESTRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDL 130 (682)
Q Consensus 59 K~La~~Tk~Fkk~~~eekl~~~~~LLK~yQ~EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~ 130 (682)
+.|.++|+.+|. .++.|+|.=..=+++.. -.+...|.++-+.+...+++.|+|+...+-..
T Consensus 4 ~~le~kt~~mr~--------~~Kkl~kr~~~~~ea~~---~~~~~~f~~ll~~~~~~~~~~~al~~yf~~~~ 64 (192)
T cd07608 4 SNLERKTRLLRS--------YLKRLIKRIVKLIEAQD---QLVDLEFNELLSEAKFKNDFNVALDSYFDPFL 64 (192)
T ss_pred HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhccccccHHHHHHhhHHH
Confidence 467778887765 36777775555555554 67889999999999999999999988777544
No 405
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=36.14 E-value=85 Score=34.79 Aligned_cols=48 Identities=17% Similarity=0.371 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHhhhccc
Q 005704 509 ICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNN 563 (682)
Q Consensus 509 vt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRylqsy~~ 563 (682)
+.+..+....|+.++|+.+....+.+..+...+..+.. +++-++....
T Consensus 142 l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~-------kl~DlEnrsR 189 (370)
T PF02994_consen 142 LNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLED-------KLDDLENRSR 189 (370)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHH-------HHHHHHhhcc
Confidence 45556666666666666666666666666666655555 8888887654
No 406
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=34.98 E-value=7.1e+02 Score=28.15 Aligned_cols=90 Identities=23% Similarity=0.212 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 260 VERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIK 339 (682)
Q Consensus 260 LEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~~ 339 (682)
.|..++|+..|+.+|..||...+..++. +..|..+.+++...|+.++........
T Consensus 299 ~Enlqmr~qqleeentelRs~~arlksl-------------------------~dklaee~qr~sd~LE~lrlql~~eq~ 353 (502)
T KOG0982|consen 299 KENLQMRDQQLEEENTELRSLIARLKSL-------------------------ADKLAEEDQRSSDLLEALRLQLICEQK 353 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 4555777788888888888776554433 344444555555555555544433222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh
Q 005704 340 KLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQA 380 (682)
Q Consensus 340 ~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~ 380 (682)
.-..+-+.+.+ .+..+... ..=++++.++|..|+.
T Consensus 354 l~~rm~d~Lrr----fq~ekeat--qELieelrkelehlr~ 388 (502)
T KOG0982|consen 354 LRVRMNDILRR----FQEEKEAT--QELIEELRKELEHLRR 388 (502)
T ss_pred HHHHHHHHHHH----HHHhhHHH--HHHHHHHHHHHHHHHH
Confidence 11111122211 22222221 2338888999888885
No 407
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=34.41 E-value=9.6e+02 Score=29.47 Aligned_cols=53 Identities=25% Similarity=0.382 Sum_probs=35.2
Q ss_pred hhcchHHHHhhHHHHHHHHHHH--HHHHHHH---HHHHHHHHHHHHHHHhhhhhhccC
Q 005704 239 RAQSDEERVAKQSEVNLLMDEV--ERAQTRL---LSLQREKDLLRSQLQSANDEAGSR 291 (682)
Q Consensus 239 ~~k~~ee~~a~~aEle~l~~DL--Era~~R~---~~LE~e~E~Lr~eL~~a~s~~~~~ 291 (682)
+++.+.+-++..++++.+..-+ .+++++. .-++.+.+.||.++++.+.....+
T Consensus 1054 r~kie~efAa~eaemdeik~~~~edrakqkei~k~L~ehelenLrnEieklndkIkdn 1111 (1424)
T KOG4572|consen 1054 RAKIEDEFAAIEAEMDEIKDGKCEDRAKQKEIDKILKEHELENLRNEIEKLNDKIKDN 1111 (1424)
T ss_pred chhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4455566667777776665443 3444444 347889999999999888766543
No 408
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=34.38 E-value=1.2e+02 Score=31.10 Aligned_cols=60 Identities=25% Similarity=0.331 Sum_probs=43.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 005704 407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSS 466 (682)
Q Consensus 407 Ll~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~ 466 (682)
|.++|..+..++..++.........++..+++...+..+.++......+|-.|=..+++.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~ 208 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQ 208 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 666777777777777777777777777777777777777777777777776665555543
No 409
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=33.89 E-value=7.6e+02 Score=28.14 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=21.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 306 LSAKEKIISELNSELHNIETALSNEREQ 333 (682)
Q Consensus 306 l~~ke~ei~~L~~e~~~Le~~L~~~r~~ 333 (682)
...++++..-|..+|..|+.+|.+..+.
T Consensus 398 r~erEkEr~~l~~eNk~L~~QLrDTAEA 425 (488)
T PF06548_consen 398 RAEREKERRFLKDENKGLQIQLRDTAEA 425 (488)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHHHH
Confidence 3445778888999999999988765554
No 410
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=33.65 E-value=9.2e+02 Score=29.06 Aligned_cols=30 Identities=13% Similarity=0.031 Sum_probs=22.1
Q ss_pred ChhhhhhHhHHHHHhhhcCcchhHHHhhhh
Q 005704 599 NPFAAFSKKERDQRYKELGIRDRITLSSGR 628 (682)
Q Consensus 599 ~Pf~~F~~~E~~r~~~~l~~~er~~l~~~r 628 (682)
.|-..=|=+|.+-+.+.||..--+++.++.
T Consensus 556 s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~ 585 (670)
T KOG0239|consen 556 SGVTGERLKEAQNINKSLSALGDVISALAS 585 (670)
T ss_pred CCCchhhhHHHHHhchhhhhhHHHHHHHhh
Confidence 344445667888888899988888777765
No 411
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.51 E-value=3.2e+02 Score=29.24 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhcccc
Q 005704 347 EKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYN 384 (682)
Q Consensus 347 ~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~iEf~ 384 (682)
++...++.++..+-.+ ..+.+.++.++.++|..-++
T Consensus 158 Els~~L~~l~~~~~~~--s~~~~k~esei~~Ik~lvln 193 (300)
T KOG2629|consen 158 ELSRALASLKNTLVQL--SRNIEKLESEINTIKQLVLN 193 (300)
T ss_pred HHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhc
Confidence 3333344444433332 23566666666666654443
No 412
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=33.18 E-value=3.2e+02 Score=30.50 Aligned_cols=50 Identities=18% Similarity=0.220 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005704 414 MEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKG 463 (682)
Q Consensus 414 L~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~ 463 (682)
..+-|+.|+.......+-++.||.+-+.+..-++..++.-+.||..-..+
T Consensus 123 AKDSItSlKekt~~vnQHVq~LQseCsvlsEnLErrrQEaeELEgyCsqL 172 (558)
T PF15358_consen 123 AKDSITSLKEKTSRVNQHVQTLQSECSVLSENLERRRQEAEELEGYCSQL 172 (558)
T ss_pred cccchhhHHHhhHHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34556777777777777777777777766666666666666665544433
No 413
>PRK14127 cell division protein GpsB; Provisional
Probab=32.69 E-value=2e+02 Score=26.23 Aligned_cols=46 Identities=17% Similarity=0.338 Sum_probs=39.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
.-...|..|....+.|-.+|.+|++++..+..++..++..+...++
T Consensus 27 EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~ 72 (109)
T PRK14127 27 EVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVGAS 72 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 6778999999999999999999999999999888888887664443
No 414
>PRK04406 hypothetical protein; Provisional
Probab=32.58 E-value=2.6e+02 Score=23.65 Aligned_cols=44 Identities=27% Similarity=0.367 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005704 421 LKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY 464 (682)
Q Consensus 421 LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~ 464 (682)
+...+.+|+.++.-.+.-+..|+..+..+...|..|...|..+.
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~ 52 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVV 52 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555566666666666666666666655553
No 415
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=32.49 E-value=8.8e+02 Score=28.48 Aligned_cols=162 Identities=15% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhccccCccchhhhhhcchhhhchHHHHHHHHhhhhhHHHHHHHHHHH
Q 005704 347 EKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLS 426 (682)
Q Consensus 347 ~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~iEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~LR~~~~ 426 (682)
........++.+..+. ..+.+.+++...-|+.---+....++++. .-.+...+...+...-.-++...........
T Consensus 342 ~~e~~~r~~e~~kd~~--~~~~~~~~~~~~sl~~~~~~E~~~~de~~--~~~~~~k~~~~~~~~~~~i~~~~~~~~~~~~ 417 (607)
T KOG0240|consen 342 TAEEWKRKLEKKKDKN--VALKEELEKLRNSLKRWRNGEEVKEDEDF--SLKEEAKMSAILSEEEMSITKLKGSLEEEED 417 (607)
T ss_pred hHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHhhhcccCcccchhhh--hHHHHHHhhhhhhhhhhhhhhcccchHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccCCCCCCCcchhHH
Q 005704 427 EKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQSSML 506 (682)
Q Consensus 427 ~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~siL 506 (682)
-+..++..|..++.....++..+.+|..+|...+........ ..-..+
T Consensus 418 ~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s--------------------------------~~~~~~ 465 (607)
T KOG0240|consen 418 ILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLS--------------------------------STRRLY 465 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------------------------------hhHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005704 507 KVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKT 544 (682)
Q Consensus 507 ~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~L 544 (682)
..+..+--+|...+.--+.++...-+.+.+|.......
T Consensus 466 e~~q~e~~~~Q~~~e~~~~e~~e~~~al~el~~~~~~~ 503 (607)
T KOG0240|consen 466 EDIQQELSEIQEENEAAKDEVKEVLTALEELAVNYDQK 503 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
No 416
>PRK09343 prefoldin subunit beta; Provisional
Probab=32.21 E-value=4.1e+02 Score=24.49 Aligned_cols=38 Identities=18% Similarity=0.240 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005704 201 EILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEV 238 (682)
Q Consensus 201 ~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l 238 (682)
.++..|...+...+..++.+...++..+...|..|..+
T Consensus 74 ~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 74 KELKERKELLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444555555554444444433
No 417
>PF14992 TMCO5: TMCO5 family
Probab=32.17 E-value=6.5e+02 Score=26.86 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 005704 266 RLLSLQREKDLLRSQLQSANDE 287 (682)
Q Consensus 266 R~~~LE~e~E~Lr~eL~~a~s~ 287 (682)
..+-||+.|+.|..-..+.++.
T Consensus 71 e~~~LE~~ne~l~~~~~elq~k 92 (280)
T PF14992_consen 71 ETAKLEKENEHLSKSVQELQRK 92 (280)
T ss_pred hhHHHhhhhHhhhhhhhhhhhh
Confidence 3367888888885444444443
No 418
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=32.01 E-value=8.4e+02 Score=28.09 Aligned_cols=63 Identities=16% Similarity=0.202 Sum_probs=37.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCChhhH
Q 005704 306 LSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQA----RPTSKMV 368 (682)
Q Consensus 306 l~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~----~~~~sDy 368 (682)
+......+...+..+......-...+..+..++..|.+....+......|-+-|.. +-+|.++
T Consensus 142 l~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ALkgd~K~rG~WGE~ 208 (475)
T PRK10361 142 LSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWGEV 208 (475)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcchHHH
Confidence 55555555555555555555555556666667777766666666666666666643 2346663
No 419
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=31.46 E-value=92 Score=24.60 Aligned_cols=28 Identities=32% Similarity=0.482 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005704 259 EVERAQTRLLSLQREKDLLRSQLQSAND 286 (682)
Q Consensus 259 DLEra~~R~~~LE~e~E~Lr~eL~~a~s 286 (682)
|-..|+.|+..|+.+|..|+.+|+-.++
T Consensus 23 d~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 23 DRSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3345678899999999999999976543
No 420
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=31.42 E-value=3.5e+02 Score=23.53 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 428 KTSLLETAEGKIAELTAKINEQQKLIQKLEDDIL 461 (682)
Q Consensus 428 l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~ 461 (682)
.......|+.++..|...+++...+..-||.-|.
T Consensus 6 ~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~ 39 (88)
T PF14389_consen 6 LHERRSALEQEVAELQKQLQEEQDLRRALEKALG 39 (88)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3455667888888999999999999988888764
No 421
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=31.33 E-value=5.6e+02 Score=25.80 Aligned_cols=77 Identities=22% Similarity=0.268 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 203 LQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQ 282 (682)
Q Consensus 203 ~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~ 282 (682)
++.....+.+.+...+.....|++.+...+.+= ............|..-|..+-..++..+..|++.+..|..+.+
T Consensus 110 LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~----~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~ 185 (192)
T PF11180_consen 110 LEAQKAQLERLIAESEARANRLQADLQIARQQQ----QQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQAN 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444555666666666666666666555331 1112223334566666777766777777778877777776655
Q ss_pred h
Q 005704 283 S 283 (682)
Q Consensus 283 ~ 283 (682)
.
T Consensus 186 ~ 186 (192)
T PF11180_consen 186 E 186 (192)
T ss_pred C
Confidence 4
No 422
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=31.20 E-value=3.2e+02 Score=22.98 Aligned_cols=33 Identities=21% Similarity=0.139 Sum_probs=12.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 413 KMEHELTQLKVKLSEKTSLLETAEGKIAELTAK 445 (682)
Q Consensus 413 kL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~e 445 (682)
-|+.++..|+..+..+......|..+...+..+
T Consensus 22 ~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 22 LLQMENEELKEKNNELKEENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333344444443333333333333333333333
No 423
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=31.19 E-value=5.8e+02 Score=25.98 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=21.7
Q ss_pred HHHhHHHHHHHhhhhhhhHHHHHHHhhhh
Q 005704 84 LKGYQEEVDNLTKRAKFGENAFLNIYQKL 112 (682)
Q Consensus 84 LK~yQ~EID~LTkRsK~aE~aFl~~Y~~L 112 (682)
+|.|=.=|..++..++..=.++-.+|.+.
T Consensus 35 ~K~Y~~av~~m~~~q~~~~e~l~~lY~p~ 63 (211)
T cd07588 35 LKNYLNSVRAMKQASKTLSETLKELYEPD 63 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 55677777788888877777778888754
No 424
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=30.95 E-value=3.9e+02 Score=23.85 Aligned_cols=78 Identities=15% Similarity=0.185 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005704 207 EQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSA 284 (682)
Q Consensus 207 e~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a 284 (682)
+..+..+|.++..-+.+.+............+......+.....-=+.......++.+.++..++.+|..|-.++...
T Consensus 29 Er~v~~kLneLd~Li~eA~~r~~~~~~~~~~~~~~l~P~~~i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~ 106 (109)
T PF03980_consen 29 ERDVVEKLNELDKLIEEAKERKNSGEREKPVWRHSLTPEEDIRAHLAPYKKKEREQLNARLQELEEENEALAEEIQEQ 106 (109)
T ss_pred HhhHHHHHHHHHHHHHHHHHhHhccccCCCCCCCCCChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 335556666666666655544432211111111111222111112224556666777888899999999999888764
No 425
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=30.93 E-value=5.6e+02 Score=25.69 Aligned_cols=70 Identities=21% Similarity=0.247 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005704 214 LRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDE 287 (682)
Q Consensus 214 l~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~ 287 (682)
...++.++..|...+...+.-+..... -....+.+|..-..=|+.++.|+..|.+.+...|.+++..+..
T Consensus 104 a~~A~~q~~~L~~~l~~a~~nl~~a~~----~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~a 173 (188)
T PF05335_consen 104 AQQAQQQLETLKAALKAAQANLANAEQ----VAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKTKKA 173 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555444433321 1233456676667778888888888888888888888876654
No 426
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=30.85 E-value=4e+02 Score=25.72 Aligned_cols=19 Identities=26% Similarity=0.545 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005704 208 QALQDQLRQAKDSVATMQK 226 (682)
Q Consensus 208 ~~L~~ql~~ae~~l~eL~~ 226 (682)
..+..+|..+..+|+.|+.
T Consensus 30 ~~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 30 DNLKTQLKEADKQIKDLKK 48 (155)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444445555555554444
No 427
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=30.83 E-value=1.2e+03 Score=29.59 Aligned_cols=35 Identities=9% Similarity=0.071 Sum_probs=18.5
Q ss_pred CcHHHHHhhHHHHHHhHHHHHHHhhhhhhhHHHHH
Q 005704 72 SPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFL 106 (682)
Q Consensus 72 ~~eekl~~~~~LLK~yQ~EID~LTkRsK~aE~aFl 106 (682)
+.-..+.....-++.++..++.++.+...+...+-
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 328 (1047)
T PRK10246 294 PHWERIQEQSAALAHTRQQIEEVNTRLQSTMALRA 328 (1047)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455566666666666666444443333
No 428
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=30.76 E-value=1.8e+02 Score=25.82 Aligned_cols=59 Identities=22% Similarity=0.346 Sum_probs=40.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005704 407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEG---KIAELTAKINEQQKLIQKLEDDILKGYS 465 (682)
Q Consensus 407 Ll~kNrkL~~eLt~LR~~~~~l~~~l~~l~~---~~~~l~~el~~~~~l~~kLE~DL~~~~~ 465 (682)
|-..-|.+..++..+|...+.+...+..+.. +...+.++...++..+..+|..+..+..
T Consensus 34 ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~ 95 (108)
T PF02403_consen 34 LDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEE 95 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677888888888887777777777665 3566666666666666666666666553
No 429
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=30.68 E-value=3.4e+02 Score=33.09 Aligned_cols=58 Identities=16% Similarity=0.330 Sum_probs=41.5
Q ss_pred HhhHHHHHHHHHHhHHhhcCCcHHHHHhhHHHHHHhHH--HHHHHhhhhhhhHHHHHHHh
Q 005704 52 ENSQKNRRKLAESTRDFKKASPEEKLSLFNSLLKGYQE--EVDNLTKRAKFGENAFLNIY 109 (682)
Q Consensus 52 ~~s~~sRK~La~~Tk~Fkk~~~eekl~~~~~LLK~yQ~--EID~LTkRsK~aE~aFl~~Y 109 (682)
+.-..-|+.+..+-++|..---++++.-+.+|++++-. +|-.+.+.|+.+-..+..-|
T Consensus 357 ~~f~~~R~~~~~rr~~~~l~k~~~r~~~l~g~~~~~~~id~vI~iir~s~~ak~~l~~~f 416 (742)
T PRK05561 357 SEWLDHRREVVTRRSQFRLDKVEKRLHILEGLLIAFLNIDEVIRIIRESDEPKANLMARF 416 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCccHHHHHHHHh
Confidence 34456788888888888766666788888889998765 55556677777766666655
No 430
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=30.67 E-value=4.3e+02 Score=31.08 Aligned_cols=86 Identities=17% Similarity=0.260 Sum_probs=46.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHH
Q 005704 190 RGLAEENQKTLEILQEREQAL--QDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRL 267 (682)
Q Consensus 190 ~el~~~~eek~~~~~ere~~L--~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~ 267 (682)
+++...++++...|..+.++| ...++..++.++++... +-+...+-.....|++.|..+.......+
T Consensus 167 ~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~-----------~ik~p~~i~~~~~e~d~lk~e~~~~~~~i 235 (555)
T TIGR03545 167 EEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKK-----------DIKNPLELQKIKEEFDKLKKEGKADKQKI 235 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhc-----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777788888777 44555666666655431 11223333344456666666665555555
Q ss_pred HH----HHHHHHHHHHHHHhhhh
Q 005704 268 LS----LQREKDLLRSQLQSAND 286 (682)
Q Consensus 268 ~~----LE~e~E~Lr~eL~~a~s 286 (682)
.. |+...++++.++++.+.
T Consensus 236 ~~~~~~l~~~~~~~~~~~~~lk~ 258 (555)
T TIGR03545 236 KSAKNDLQNDKKQLKADLAELKK 258 (555)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHh
Confidence 44 44444444444444433
No 431
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=30.50 E-value=1.7e+02 Score=26.37 Aligned_cols=47 Identities=19% Similarity=0.261 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHhhhccc
Q 005704 517 RARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDYNN 563 (682)
Q Consensus 517 r~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRylqsy~~ 563 (682)
..++..|.++|+.-.+.+..+.+|+++|.=-|-.|--+|-.||.=..
T Consensus 25 Q~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 25 QAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999999999999999999999999876443
No 432
>smart00338 BRLZ basic region leucin zipper.
Probab=30.45 E-value=1.7e+02 Score=23.62 Aligned_cols=35 Identities=31% Similarity=0.466 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005704 513 RDRFRARLRETEEEVRQLKEKIGVLTAELEKTKAD 547 (682)
Q Consensus 513 RDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~D 547 (682)
.+.+..++..|+.+...+..++..|+.++..|+.-
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555666666555543
No 433
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=30.27 E-value=5.7e+02 Score=25.61 Aligned_cols=26 Identities=15% Similarity=0.121 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005704 263 AQTRLLSLQREKDLLRSQLQSANDEA 288 (682)
Q Consensus 263 a~~R~~~LE~e~E~Lr~eL~~a~s~~ 288 (682)
..+.+.+.+.-+......|..+....
T Consensus 72 Le~ev~EAe~vV~ee~~sL~~aq~na 97 (188)
T PF05335_consen 72 LEQEVREAEAVVQEEKASLQQAQANA 97 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555566665554443
No 434
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=30.13 E-value=3.3e+02 Score=22.83 Aligned_cols=44 Identities=18% Similarity=0.164 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 192 LAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQL 235 (682)
Q Consensus 192 l~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL 235 (682)
+...+......|+..-..|+..++...+....|.+.......++
T Consensus 15 Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv 58 (70)
T PF04899_consen 15 LQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQV 58 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44556666677777777777777777666666665555444333
No 435
>PRK10963 hypothetical protein; Provisional
Probab=30.08 E-value=1e+02 Score=31.49 Aligned_cols=42 Identities=24% Similarity=0.251 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHH
Q 005704 505 MLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRF 557 (682)
Q Consensus 505 iL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRy 557 (682)
.++.|.-|.+++|.||.+||.++..+-..- .+|-.+|+++.-
T Consensus 38 aVSL~ErQ~~~LR~r~~~Le~~l~~Li~~A-----------~~Ne~l~~~~~~ 79 (223)
T PRK10963 38 TVSLVEWQMARQRNHIHVLEEEMTLLMEQA-----------IANEDLFYRLLP 79 (223)
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 678899999999999999999998776432 356666666554
No 436
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=30.06 E-value=7.7e+02 Score=27.01 Aligned_cols=50 Identities=16% Similarity=0.251 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005704 414 MEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKG 463 (682)
Q Consensus 414 L~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~ 463 (682)
|+++-..+...|....++++++.+-.......+..++.....|-..|.+.
T Consensus 9 L~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~ 58 (330)
T PF07851_consen 9 LQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRC 58 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444555555555555555555555555555555555544444444443
No 437
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.92 E-value=9.8e+02 Score=28.21 Aligned_cols=61 Identities=11% Similarity=0.110 Sum_probs=48.0
Q ss_pred cchhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHhhhc
Q 005704 501 DQSSMLKVICNQRDRF---RARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDY 561 (682)
Q Consensus 501 ~~~siL~Ivt~QRDRf---r~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRylqsy 561 (682)
...+.-|.|-.-||.. ..+-.+|..++.-..+..+.|+..++.++..|++--+-|+-+|.-
T Consensus 697 ~~~~~s~~~~~~~~~~~~~E~~~~~LR~~~EL~~~~~~~L~~~~~~~~~~~~~~K~~i~E~~~~ 760 (852)
T KOG4787|consen 697 LLESKSTTLVEKTRSLEEQEERSKKLRAETELLRKDMQELETDKKTVKEFEIKYKESIFETERE 760 (852)
T ss_pred ccccccchhhhhhhccccccccHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHH
Confidence 4455666676666654 346678888888889999999999999999999998888887654
No 438
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=29.71 E-value=5.3e+02 Score=25.05 Aligned_cols=61 Identities=21% Similarity=0.314 Sum_probs=49.5
Q ss_pred chHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 005704 401 SKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKL-IQKLEDDIL 461 (682)
Q Consensus 401 ~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l-~~kLE~DL~ 461 (682)
+++...|-.|..++.+.+........+...-....+..+.....+....... ..++..+..
T Consensus 33 ppI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~ 94 (155)
T PRK06569 33 PKAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFL 94 (155)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999998888888888888888887776555 444444443
No 439
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=29.60 E-value=2.6e+02 Score=22.39 Aligned_cols=9 Identities=22% Similarity=0.501 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 005704 416 HELTQLKVK 424 (682)
Q Consensus 416 ~eLt~LR~~ 424 (682)
+++..+...
T Consensus 7 n~~~~~~~~ 15 (55)
T PF05377_consen 7 NELPRIESS 15 (55)
T ss_pred HHHHHHHHH
Confidence 333333333
No 440
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=29.54 E-value=2.6e+02 Score=25.17 Aligned_cols=61 Identities=18% Similarity=0.287 Sum_probs=41.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhcc
Q 005704 405 SLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAEL--TAKINEQQKLIQKLEDDILKGYS 465 (682)
Q Consensus 405 ~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l--~~el~~~~~l~~kLE~DL~~~~~ 465 (682)
.+++.+..--..++..+...+.....++..++.++..+ ..++..++..+.+++.++..+..
T Consensus 24 ~~~l~~~~a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~ 86 (106)
T PF10805_consen 24 WLWLRRTYAKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSA 86 (106)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34455555556777777777777777777777777777 66677777777777777766654
No 441
>PRK00846 hypothetical protein; Provisional
Probab=29.52 E-value=2.3e+02 Score=24.24 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHh
Q 005704 514 DRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFV 558 (682)
Q Consensus 514 DRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRyl 558 (682)
+.+..|+.+||..+.-+..+|..|-..+-..+..--+|-+.+++|
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L 53 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHL 53 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 442
>PRK15396 murein lipoprotein; Provisional
Probab=29.51 E-value=2.3e+02 Score=24.26 Aligned_cols=20 Identities=35% Similarity=0.410 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005704 251 SEVNLLMDEVERAQTRLLSL 270 (682)
Q Consensus 251 aEle~l~~DLEra~~R~~~L 270 (682)
+.+.-...|.+||++|+...
T Consensus 53 ~~~~~a~~eA~raN~RlDn~ 72 (78)
T PRK15396 53 SDVQAAKDDAARANQRLDNQ 72 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444566788888887643
No 443
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=29.47 E-value=36 Score=31.70 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 005704 637 RTFAFFYTILLHVLVFTCLYRMS 659 (682)
Q Consensus 637 R~~f~~Y~~~LH~lv~~~ly~~~ 659 (682)
|++||+-+|++=+|||++++..+
T Consensus 1 RW~l~~iii~~i~l~~~~~~~~~ 23 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLFYCHN 23 (130)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777776666554
No 444
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=29.36 E-value=4e+02 Score=23.51 Aligned_cols=31 Identities=10% Similarity=0.237 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 204 QEREQALQDQLRQAKDSVATMQKLHELAQSQ 234 (682)
Q Consensus 204 ~ere~~L~~ql~~ae~~l~eL~~~le~~Q~e 234 (682)
..+...|..++..++..+..+....+.++.-
T Consensus 71 ~~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~ 101 (127)
T smart00502 71 ENKLKVLEQQLESLTQKQEKLSHAINFTEEA 101 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555566666666665555555433
No 445
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=29.16 E-value=84 Score=26.82 Aligned_cols=31 Identities=16% Similarity=0.240 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 249 KQSEVNLLMDEVERAQTRLLSLQREKDLLRS 279 (682)
Q Consensus 249 ~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~ 279 (682)
...|++....-|.+++.|+..||.++..|..
T Consensus 48 tREEFd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 48 TREEFDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4688999999999999999999999988853
No 446
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=28.95 E-value=7.6e+02 Score=26.64 Aligned_cols=35 Identities=17% Similarity=0.255 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 194 EENQKTLEILQEREQALQDQLRQAKDSVATMQKLH 228 (682)
Q Consensus 194 ~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~l 228 (682)
++++-.+.++.=....|.+.|++++..+-.++..+
T Consensus 101 aQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~ 135 (302)
T PF09738_consen 101 AQLDNEKSALMYQVDLLKDKLEELEETLAQLQREY 135 (302)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555554444455555555555444444433
No 447
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=28.92 E-value=1.2e+03 Score=28.92 Aligned_cols=38 Identities=11% Similarity=0.204 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 005704 252 EVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAG 289 (682)
Q Consensus 252 Ele~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~ 289 (682)
.+=-+|.|+-.-.+.+.+|..++..|+.+...-.....
T Consensus 614 d~ls~mkd~~~~~q~~~EL~~q~~~L~ee~~af~~~v~ 651 (984)
T COG4717 614 DILSTMKDLKKLMQKKAELTHQVARLREEQAAFEERVE 651 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456888888999999999999999999876655543
No 448
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=28.86 E-value=1.2e+02 Score=29.36 Aligned_cols=43 Identities=21% Similarity=0.431 Sum_probs=29.1
Q ss_pred HhhHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHHHHHH
Q 005704 137 SENRKMKIELEEYRTEATHLKNQQS--TIRRLEERNRQLEQQMEE 179 (682)
Q Consensus 137 ~E~~kL~~el~~l~~el~~lknq~~--~~~~Lkerl~~lE~~~e~ 179 (682)
.+..+|+.|+.+++.|+..+..|+. .+-+|+-++.+++.+++.
T Consensus 40 ~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~ 84 (161)
T PF04420_consen 40 KEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEK 84 (161)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888888888888887753 666666555555555533
No 449
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=28.80 E-value=9.9e+02 Score=27.89 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhc
Q 005704 346 IEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAV 381 (682)
Q Consensus 346 ~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~i 381 (682)
+.....+..++.+++.+ |+-+.+|+..=+.+
T Consensus 277 d~aeeel~~I~e~ie~l-----Yd~lE~EveA~~~V 307 (570)
T COG4477 277 DEAEEELGLIQEKIESL-----YDLLEREVEAKNVV 307 (570)
T ss_pred hhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 44444555555555543 78888887776655
No 450
>PRK02119 hypothetical protein; Provisional
Probab=28.70 E-value=3.5e+02 Score=22.70 Aligned_cols=50 Identities=10% Similarity=0.125 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHh
Q 005704 509 ICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFV 558 (682)
Q Consensus 509 vt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRyl 558 (682)
+....+++..|+.=.|.-+..++..+...+.+|+.|+..--.|+++++-+
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566666667766667777777777777777777777555556665554
No 451
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=28.65 E-value=6.9e+02 Score=26.01 Aligned_cols=9 Identities=56% Similarity=1.043 Sum_probs=4.4
Q ss_pred CCCHHHHHH
Q 005704 116 PDPYPALAS 124 (682)
Q Consensus 116 PDP~PlLe~ 124 (682)
|-||.++..
T Consensus 17 ~~~~~l~~~ 25 (264)
T PF06008_consen 17 PAPYKLLSS 25 (264)
T ss_pred hhHHHHHHH
Confidence 445555443
No 452
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=28.63 E-value=4e+02 Score=23.34 Aligned_cols=31 Identities=10% Similarity=0.209 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 203 LQEREQALQDQLRQAKDSVATMQKLHELAQS 233 (682)
Q Consensus 203 ~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~ 233 (682)
|+.+...|+.++..+.+.+..|+..++....
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~~e~~ 77 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLDTERE 77 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777778888888888888888877775443
No 453
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=28.54 E-value=1.4e+02 Score=33.19 Aligned_cols=48 Identities=27% Similarity=0.356 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 005704 419 TQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSS 466 (682)
Q Consensus 419 t~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~ 466 (682)
+.+...+++++.++..++..+....+.+......+..|+..|..+.+.
T Consensus 140 ~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnr 187 (370)
T PF02994_consen 140 ESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENR 187 (370)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 456666677777777777777777777777777777777777766643
No 454
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=28.48 E-value=6.2e+02 Score=25.44 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 005704 266 RLLSLQREKDLLRSQLQSAN 285 (682)
Q Consensus 266 R~~~LE~e~E~Lr~eL~~a~ 285 (682)
+...++...+.|..++..+.
T Consensus 92 ~k~~~e~~~~~l~~~~~~~~ 111 (221)
T PF04012_consen 92 RKADLEEQAERLEQQLDQAE 111 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 455
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.43 E-value=4.6e+02 Score=28.10 Aligned_cols=60 Identities=8% Similarity=0.188 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhc
Q 005704 320 LHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAV 381 (682)
Q Consensus 320 ~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~i 381 (682)
+..+...+...++....+..+|..+|..+...+..+...++++ .++++-||.+|=..+.+
T Consensus 138 ~~~l~~~va~v~q~~~~qq~Els~~L~~l~~~~~~~s~~~~k~--esei~~Ik~lvln~~~f 197 (300)
T KOG2629|consen 138 LNALMDEVAQVSQLLATQQSELSRALASLKNTLVQLSRNIEKL--ESEINTIKQLVLNMSNF 197 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhccccc
Confidence 3333333444444444444455555555555555666666666 57789999887777754
No 456
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=28.15 E-value=6.8e+02 Score=25.83 Aligned_cols=8 Identities=25% Similarity=0.248 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 005704 314 SELNSELH 321 (682)
Q Consensus 314 ~~L~~e~~ 321 (682)
.+|..++.
T Consensus 119 ~~l~~ei~ 126 (246)
T TIGR03321 119 DELRRRTG 126 (246)
T ss_pred HHHHHHHH
Confidence 33333333
No 457
>PRK04325 hypothetical protein; Provisional
Probab=28.08 E-value=2.5e+02 Score=23.65 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHh
Q 005704 514 DRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFV 558 (682)
Q Consensus 514 DRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRyl 558 (682)
+.+..|+.+||..+.-+..+|..|-..+-.-+.+--.|-..++.|
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 458
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=27.99 E-value=7.5e+02 Score=26.24 Aligned_cols=59 Identities=19% Similarity=0.281 Sum_probs=34.8
Q ss_pred chHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 005704 401 SKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSS 466 (682)
Q Consensus 401 ~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~ 466 (682)
..+|..|...-+.+..++...+.++ ..+..+-..+.++++..+...++.+..|.+++..
T Consensus 161 ~~iE~~l~~ai~~~~~~~~~~~~~l-------~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~v 219 (267)
T PF10234_consen 161 NEIEKALKEAIKAVQQQLQQTQQQL-------NNLASDEANLEAKIEKKKQELERNQKRLQSLQSV 219 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456666666555555555555544 4455555556666666666666666677766654
No 459
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=27.99 E-value=8.3e+02 Score=26.75 Aligned_cols=13 Identities=23% Similarity=0.450 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 005704 311 KIISELNSELHNI 323 (682)
Q Consensus 311 ~ei~~L~~e~~~L 323 (682)
..+.+|.-|++.|
T Consensus 208 sKVqDLm~EirnL 220 (401)
T PF06785_consen 208 SKVQDLMYEIRNL 220 (401)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 460
>PRK00295 hypothetical protein; Provisional
Probab=27.95 E-value=2.8e+02 Score=22.92 Aligned_cols=43 Identities=23% Similarity=0.292 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005704 421 LKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKG 463 (682)
Q Consensus 421 LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~ 463 (682)
+...+.+|+.++.-.+.-+..|+..+..+...|..|...|..+
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L 45 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 461
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=27.94 E-value=3.2e+02 Score=21.96 Aligned_cols=28 Identities=18% Similarity=0.464 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 519 RLRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 519 r~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
++.+|..++..+..++..|..+++.++.
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~ 31 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRA 31 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444
No 462
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=27.87 E-value=2.1e+02 Score=25.77 Aligned_cols=40 Identities=15% Similarity=0.032 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 507 KVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 507 ~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
--+.+|.+..+.+|.+|+.+...+..++..|+...+-+..
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe 69 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEE 69 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHH
Confidence 3455566666666666666666666666666664455555
No 463
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=27.80 E-value=6.9e+02 Score=25.78 Aligned_cols=33 Identities=6% Similarity=0.119 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005704 206 REQALQDQLRQAKDSVATMQKLHELAQSQLFEV 238 (682)
Q Consensus 206 re~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l 238 (682)
+-..+.++++.++..++.+...+...+.++.++
T Consensus 57 e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L 89 (251)
T PF11932_consen 57 EYRQLEREIENLEVYNEQLERQVASQEQELASL 89 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444333333333
No 464
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=27.78 E-value=4.7e+02 Score=23.82 Aligned_cols=93 Identities=22% Similarity=0.256 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH---HHhhHHHHHHHHHHHHHHHHH
Q 005704 190 RGLAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEE---RVAKQSEVNLLMDEVERAQTR 266 (682)
Q Consensus 190 ~el~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee---~~a~~aEle~l~~DLEra~~R 266 (682)
.+-+..++.....++.+...|+..++..+....+|-...+.....+..+......- .....++|..+..++|. .+
T Consensus 1 ~ee~~~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~--eK 78 (107)
T PF09304_consen 1 KEEKEALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED--EK 78 (107)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
T ss_pred CcHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 005704 267 LLSLQREKDLLRSQLQSA 284 (682)
Q Consensus 267 ~~~LE~e~E~Lr~eL~~a 284 (682)
.+-++-+..-++.+...+
T Consensus 79 ~ak~~l~~r~~k~~~dka 96 (107)
T PF09304_consen 79 QAKLELESRLLKAQKDKA 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhh
No 465
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=27.69 E-value=2.6e+02 Score=29.39 Aligned_cols=59 Identities=20% Similarity=0.256 Sum_probs=35.1
Q ss_pred chHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005704 401 SKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKG 463 (682)
Q Consensus 401 ~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~ 463 (682)
..||..+..+++.+ .+|..+++.++.++..|..++..+.-+++.+.+.-..+=.||.+.
T Consensus 43 ~~le~~~~~~~~~~----~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 43 TQLERISNAHSQLL----TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHhhhHHH----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666533 555666666666666666666666666655555555555555544
No 466
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=27.66 E-value=1.7e+02 Score=22.32 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHh
Q 005704 523 TEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFV 558 (682)
Q Consensus 523 LE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRyl 558 (682)
||.+...++..-..|+.+.++|+.+|-+|=..|.-|
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555555554444444333
No 467
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=27.66 E-value=3.9e+02 Score=29.21 Aligned_cols=8 Identities=13% Similarity=0.509 Sum_probs=3.5
Q ss_pred HHHhhhhc
Q 005704 106 LNIYQKLY 113 (682)
Q Consensus 106 l~~Y~~L~ 113 (682)
+.+|+.+.
T Consensus 23 ~~~~~~~~ 30 (370)
T PRK11578 23 ITLWRILN 30 (370)
T ss_pred hhheeecC
Confidence 44444443
No 468
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=27.66 E-value=4.3e+02 Score=23.36 Aligned_cols=41 Identities=22% Similarity=0.329 Sum_probs=19.9
Q ss_pred hHHhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 005704 135 LESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQ 175 (682)
Q Consensus 135 le~E~~kL~~el~~l~~el~~lknq~~~~~~Lkerl~~lE~ 175 (682)
+......+...+.+++.....++.....|+.++..+..||+
T Consensus 40 ~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~ 80 (99)
T PF10046_consen 40 MKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQ 80 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555554444445545544444433
No 469
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=27.62 E-value=7.2e+02 Score=25.90 Aligned_cols=11 Identities=0% Similarity=0.117 Sum_probs=4.5
Q ss_pred hHHHHHHHHHH
Q 005704 367 MVDDLRKKVKI 377 (682)
Q Consensus 367 DyeelK~EL~~ 377 (682)
+-+.|+.-|..
T Consensus 190 ~~~~~~~~l~~ 200 (250)
T PRK14474 190 LRAQILESLHQ 200 (250)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 470
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=27.36 E-value=6.3e+02 Score=25.14 Aligned_cols=62 Identities=18% Similarity=0.280 Sum_probs=39.8
Q ss_pred HHHHHhhHhhHHHHHHHHHHhHHhhc---CCcHHHHHhhHHHHHHhHHHHHHHhhhhhhhHHHHHHHhhhhc
Q 005704 45 LKIAENQENSQKNRRKLAESTRDFKK---ASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLY 113 (682)
Q Consensus 45 ~ei~~~q~~s~~sRK~La~~Tk~Fkk---~~~eekl~~~~~LLK~yQ~EID~LTkRsK~aE~aFl~~Y~~L~ 113 (682)
--|.......+.--|.+-+.++.|=. +|.-+-...|..|+=.--.-||.| |-.|.+.|..|.
T Consensus 39 a~IG~vLd~yL~yQKafnE~MekYLe~lNlPSr~DiarvA~lvinlE~kvD~l-------ee~fdd~~d~l~ 103 (189)
T TIGR02132 39 ALMGNVLDLNLFYQKALNDTTGNYLEQVNVPTKEDIANVASLVINLEEKVDLI-------EEFFDDKFDELE 103 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 33444455555555666666666654 666666777777777666677765 677777777776
No 471
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=27.20 E-value=1.2e+03 Score=28.51 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=10.1
Q ss_pred cCCcHHHHHhhHHHHHHhH
Q 005704 70 KASPEEKLSLFNSLLKGYQ 88 (682)
Q Consensus 70 k~~~eekl~~~~~LLK~yQ 88 (682)
-.++.+...-+..+|+.+.
T Consensus 419 GtDp~eg~ala~aile~l~ 437 (782)
T PRK00409 419 GTDPDEGAALAISILEYLR 437 (782)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 3555555555555665543
No 472
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=27.08 E-value=6.6e+02 Score=25.29 Aligned_cols=85 Identities=15% Similarity=0.219 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccCCCCCCCcc
Q 005704 423 VKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQ 502 (682)
Q Consensus 423 ~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (682)
..+.+.+-+...|+.+...++..+...+.-...|..||...+.
T Consensus 98 ~~LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~------------------------------------- 140 (192)
T PF11180_consen 98 ARLADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQ------------------------------------- 140 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------
Confidence 4444555555556666666666666666666777777664442
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 503 SSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 503 ~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
---.|+....-.|.....|+.+....+.++..|+..|..|+.
T Consensus 141 --Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~ 182 (192)
T PF11180_consen 141 --QQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQR 182 (192)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123455555666777777777777777777777776666665
No 473
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=27.04 E-value=8.5e+02 Score=26.53 Aligned_cols=22 Identities=14% Similarity=0.167 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005704 261 ERAQTRLLSLQREKDLLRSQLQ 282 (682)
Q Consensus 261 Era~~R~~~LE~e~E~Lr~eL~ 282 (682)
+.++.++..++..++.++..+.
T Consensus 161 ~~~~~~l~~~~~~l~~~~~~l~ 182 (370)
T PRK11578 161 GTIDAQIKRNQASLDTAKTNLD 182 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333334444444444443
No 474
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=27.02 E-value=8.4e+02 Score=26.47 Aligned_cols=79 Identities=16% Similarity=0.249 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH------------HHhhHHHHHHHHHHHHHHHH-------HHHHHH
Q 005704 211 QDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEE------------RVAKQSEVNLLMDEVERAQT-------RLLSLQ 271 (682)
Q Consensus 211 ~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee------------~~a~~aEle~l~~DLEra~~-------R~~~LE 271 (682)
.+.+.-|+..+......+..++..|-+.+.+++.- .+..++|+--+..+|..+++ ++..|-
T Consensus 178 ~dt~r~Ae~eV~~~eerv~kAs~~L~~yr~kngvfdp~~qaevq~~Lvs~Le~eL~~iqaqL~tvks~m~~~nPqi~~Lk 257 (372)
T COG3524 178 RDTVRFAEEEVQKAEERVKKASNDLTDYRIKNGVFDPKAQAEVQMSLVSKLEDELIVIQAQLDTVKSVMNPENPQIPGLK 257 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHH
Confidence 34555566666666666666666666555554321 12234566666666665532 446677
Q ss_pred HHHHHHHHHHHhhhhhhc
Q 005704 272 REKDLLRSQLQSANDEAG 289 (682)
Q Consensus 272 ~e~E~Lr~eL~~a~s~~~ 289 (682)
.|.+.||.||..-.....
T Consensus 258 arieSlrkql~qe~q~is 275 (372)
T COG3524 258 ARIESLRKQLLQEKQAIS 275 (372)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 777777777776665543
No 475
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=26.96 E-value=1.9e+02 Score=30.85 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=12.5
Q ss_pred hhHHhhHHHHHHHHHHHHHHHH
Q 005704 134 ELESENRKMKIELEEYRTEATH 155 (682)
Q Consensus 134 ~le~E~~kL~~el~~l~~el~~ 155 (682)
.+..||.+|++++.+++.++..
T Consensus 70 ~l~~EN~~Lr~e~~~l~~~~~~ 91 (283)
T TIGR00219 70 NLEYENYKLRQELLKKNQQLEI 91 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666655444443
No 476
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=26.89 E-value=5.2e+02 Score=24.05 Aligned_cols=44 Identities=16% Similarity=0.350 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005704 195 ENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEV 238 (682)
Q Consensus 195 ~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l 238 (682)
.+++.+..+..+...|.+.+..+...+..++..++..+..+..+
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l 134 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQL 134 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555666666666666666665555555444433
No 477
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=26.83 E-value=1.2e+02 Score=26.68 Aligned_cols=28 Identities=32% Similarity=0.577 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 519 RLRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 519 r~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
+..+|++++..++.++..++.+++.+++
T Consensus 71 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~ 98 (104)
T PF13600_consen 71 ELKELEEELEALEDELAALQDEIQALEA 98 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666666666666666
No 478
>PRK00736 hypothetical protein; Provisional
Probab=26.81 E-value=2.7e+02 Score=23.03 Aligned_cols=44 Identities=20% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005704 420 QLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKG 463 (682)
Q Consensus 420 ~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~ 463 (682)
.+...+.+|+.++.-.+.-+..|+..+..+...|..|...|..+
T Consensus 2 ~~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L 45 (68)
T PRK00736 2 DAEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDAL 45 (68)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 479
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=26.70 E-value=2.9e+02 Score=29.17 Aligned_cols=25 Identities=24% Similarity=0.187 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 506 LKVICNQRDRFRARLRETEEEVRQL 530 (682)
Q Consensus 506 L~Ivt~QRDRfr~r~~ELE~el~~~ 530 (682)
..++..-..|=+..+.+||.+++.+
T Consensus 234 ~~~~de~I~rEeeEIreLE~k~~~L 258 (259)
T PF08657_consen 234 SVDTDEDIRREEEEIRELERKKREL 258 (259)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455666666677888888877654
No 480
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.59 E-value=1.1e+03 Score=27.64 Aligned_cols=29 Identities=10% Similarity=0.197 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 207 EQALQDQLRQAKDSVATMQKLHELAQSQL 235 (682)
Q Consensus 207 e~~L~~ql~~ae~~l~eL~~~le~~Q~eL 235 (682)
+++..+.++..++.+++|.......|.++
T Consensus 326 erE~~EeIe~~~ke~kdLkEkv~~lq~~l 354 (654)
T KOG4809|consen 326 ERERLEEIESFRKENKDLKEKVNALQAEL 354 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555554443
No 481
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=26.55 E-value=4.9e+02 Score=24.55 Aligned_cols=35 Identities=11% Similarity=0.210 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh
Q 005704 344 LLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQA 380 (682)
Q Consensus 344 ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~ 380 (682)
|-++++.+...|..++.++ ..++..+.+|++.++.
T Consensus 75 Qk~eLE~~k~~L~qqv~~L--~~e~s~~~~E~da~k~ 109 (135)
T KOG4196|consen 75 QKHELEKEKAELQQQVEKL--KEENSRLRRELDAYKS 109 (135)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 4455555666666666666 5677888888887775
No 482
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=26.52 E-value=1.6e+02 Score=31.39 Aligned_cols=45 Identities=18% Similarity=0.267 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHhhh
Q 005704 509 ICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQD 560 (682)
Q Consensus 509 vt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRylqs 560 (682)
-|.=|+|-|..-+.|+.++..+..+...||..+..|.. .||||-.
T Consensus 239 AtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~ler-------EI~ylKq 283 (294)
T KOG4571|consen 239 ATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELER-------EIRYLKQ 283 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 45667778888889999999999999999999999999 8999854
No 483
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=26.40 E-value=6.7e+02 Score=25.12 Aligned_cols=39 Identities=26% Similarity=0.321 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHH
Q 005704 519 RLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRF 557 (682)
Q Consensus 519 r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRy 557 (682)
|+.+|..++..+...+..+|.++..++--|-.-|++++-
T Consensus 117 r~~el~kklnslkk~~e~lr~el~k~~e~dpqv~~k~~~ 155 (203)
T KOG3433|consen 117 RTDELTKKLNSLKKILESLRWELAKIQETDPQVFEKKVH 155 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 344444445444445555555555555555555555443
No 484
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=26.09 E-value=3.2e+02 Score=23.80 Aligned_cols=29 Identities=31% Similarity=0.292 Sum_probs=16.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 246 RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQL 281 (682)
Q Consensus 246 ~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL 281 (682)
.....+||.++..++-+ ||..+..|..+|
T Consensus 56 ~keLL~EIA~lE~eV~~-------LE~~v~~L~~~l 84 (88)
T PF14389_consen 56 AKELLEEIALLEAEVAK-------LEQKVLSLYRQL 84 (88)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 44445677776666544 555555555444
No 485
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.90 E-value=7.5e+02 Score=25.56 Aligned_cols=120 Identities=19% Similarity=0.214 Sum_probs=78.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCcccccc
Q 005704 404 ESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAG 483 (682)
Q Consensus 404 E~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~ 483 (682)
++.+..--+++-+-+...-.++..-..+.+.+...+...+.++.+..+|+.+-+.....+.+..
T Consensus 32 D~f~q~~r~~~~nS~~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqei---------------- 95 (246)
T KOG4657|consen 32 DSFIQSPRRRSMNSLVEFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEI---------------- 95 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 4444444445555555554566777777777777788888888888887777666665554321
Q ss_pred ccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhhhHhhHHHHH
Q 005704 484 GTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTA-------ELEKTKADNVQLYGKIR 556 (682)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~-------Ei~~Lk~DN~kLyEkiR 556 (682)
.-.++..++.+.+++-|++++......|+..+. ..-+-+.|--..-|++.
T Consensus 96 -----------------------k~~q~elEvl~~n~Q~lkeE~dd~keiIs~kr~~~~Ka~e~~~kRkQdsa~~~e~a~ 152 (246)
T KOG4657|consen 96 -----------------------KATQSELEVLRRNLQLLKEEKDDSKEIISQKRQALSKAKENAGKRKQDSADIHEAAS 152 (246)
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHH
Confidence 122456788888999999999888888887763 22233556655556666
Q ss_pred Hhhhcc
Q 005704 557 FVQDYN 562 (682)
Q Consensus 557 ylqsy~ 562 (682)
|...|-
T Consensus 153 wy~dyL 158 (246)
T KOG4657|consen 153 WYNDYL 158 (246)
T ss_pred HHHHhc
Confidence 666664
No 486
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=25.84 E-value=2e+02 Score=33.50 Aligned_cols=49 Identities=18% Similarity=0.390 Sum_probs=36.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQK 455 (682)
Q Consensus 407 Ll~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~k 455 (682)
|..|-.+|++++.+++..+++++..+.+-+.++..++.+++..+--...
T Consensus 98 le~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~E 146 (907)
T KOG2264|consen 98 LEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEE 146 (907)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHH
Confidence 4556678888888888888888888888888888777777665544443
No 487
>PRK02793 phi X174 lysis protein; Provisional
Probab=25.78 E-value=3.5e+02 Score=22.67 Aligned_cols=45 Identities=27% Similarity=0.303 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005704 419 TQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKG 463 (682)
Q Consensus 419 t~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~ 463 (682)
..+...+.+|+.++.-.+.-+..|+..+..+...|..|...|..+
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLL 48 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>PRK11546 zraP zinc resistance protein; Provisional
Probab=25.64 E-value=3.7e+02 Score=25.77 Aligned_cols=55 Identities=15% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh
Q 005704 324 ETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQA 380 (682)
Q Consensus 324 e~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~ 380 (682)
++.++.+.+.+..+...|.+++-.++.++..| .-..-|+..-+..+.+|+..|+.
T Consensus 49 Qa~~q~I~~~f~~~t~~LRqqL~aKr~ELnAL--l~~~~pD~~kI~aL~kEI~~Lr~ 103 (143)
T PRK11546 49 QAAWQKIHNDFYAQTSALRQQLVSKRYEYNAL--LTANPPDSSKINAVAKEMENLRQ 103 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCCCHHHHHHHHHHHHHHHH
No 489
>PHA01750 hypothetical protein
Probab=25.62 E-value=2.2e+02 Score=23.49 Aligned_cols=39 Identities=10% Similarity=0.316 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 503 SSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAEL 541 (682)
Q Consensus 503 ~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei 541 (682)
+.+-.||.+..|.++..+.++.-......+++.+++..+
T Consensus 34 dAvkeIV~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~ 72 (75)
T PHA01750 34 DAVKEIVNSELDNLKTEIEELKIKQDELSRQVEEIKRKL 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 345677888888877777777655555555555544433
No 490
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=25.05 E-value=2.2e+02 Score=23.25 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=12.9
Q ss_pred hHHhhHHHHHHHHHHHHHHHHhh
Q 005704 135 LESENRKMKIELEEYRTEATHLK 157 (682)
Q Consensus 135 le~E~~kL~~el~~l~~el~~lk 157 (682)
++.|..+|..+++.++.++..+.
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~ 24 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLE 24 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666665555555533
No 491
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=24.82 E-value=4.7e+02 Score=22.83 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=24.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005704 246 RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSA 284 (682)
Q Consensus 246 ~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a 284 (682)
.....+.-.-|-.+|+.+..|...|+.-+..+...|..+
T Consensus 41 i~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a 79 (89)
T PF13747_consen 41 IQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA 79 (89)
T ss_pred HHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445566667777777777777777666666544
No 492
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=24.82 E-value=3.8e+02 Score=23.99 Aligned_cols=44 Identities=16% Similarity=0.314 Sum_probs=26.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005704 501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKT 544 (682)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~L 544 (682)
+...-..++....+.++.....+..++.....++..+...+..+
T Consensus 74 s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 117 (120)
T PF02996_consen 74 SLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQL 117 (120)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666666666666666666655555443
No 493
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=24.81 E-value=5.7e+02 Score=28.90 Aligned_cols=97 Identities=15% Similarity=0.152 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 005704 192 LAEENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQ 271 (682)
Q Consensus 192 l~~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE 271 (682)
+...|.++...+....+.|.+..-=+-+-+.=+..-.+++|.+|.-|+..+-+.....+.|-.+--.+.|....-++.|+
T Consensus 473 ~~sa~~~~~~~lr~~~Q~LtkSa~PLgkl~D~i~eD~daMq~EL~mWrse~rq~~~elq~eq~~t~~a~epL~~~la~lq 552 (583)
T KOG3809|consen 473 IMSAEREKMKQLREKLQDLTKSAYPLGKLFDFINEDIDAMQKELEMWRSEQRQNEQELQNEQAATFGASEPLYNILANLQ 552 (583)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHhhhhcccccchHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhhhhh
Q 005704 272 REKDLLRSQLQSANDEA 288 (682)
Q Consensus 272 ~e~E~Lr~eL~~a~s~~ 288 (682)
+.+..-+++|.++....
T Consensus 553 ~~I~d~~e~i~~~r~~I 569 (583)
T KOG3809|consen 553 KEINDTKEEISKARGRI 569 (583)
T ss_pred HHHHHHHHHHHHHHHHH
No 494
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=24.71 E-value=1.7e+02 Score=25.42 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005704 253 VNLLMDEVERAQTRLLSLQREKDLLRSQLQSA 284 (682)
Q Consensus 253 le~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a 284 (682)
++-|..|+++++.++++++.++..|..+..++
T Consensus 3 leKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~ 34 (83)
T PF14193_consen 3 LEKIRAEIEKTKEKIAELQARLKELEAQKTEA 34 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=24.64 E-value=2.5e+02 Score=22.64 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005704 424 KLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY 464 (682)
Q Consensus 424 ~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~ 464 (682)
...++..++..+.+.+............-+.+||++++++.
T Consensus 2 ~~k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlR 42 (57)
T PF02346_consen 2 RIKDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLR 42 (57)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
No 496
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=24.57 E-value=1.2e+02 Score=23.12 Aligned_cols=21 Identities=19% Similarity=0.528 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005704 638 TFAFFYTILLHVLVFTCLYRM 658 (682)
Q Consensus 638 ~~f~~Y~~~LH~lv~~~ly~~ 658 (682)
.+|+-+|++|-||+++.+.++
T Consensus 30 ~lfvnf~lilicllli~iivm 50 (52)
T TIGR01294 30 NLFINFCLILICLLLICIIVM 50 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 497
>PLN03188 kinesin-12 family protein; Provisional
Probab=24.56 E-value=1.6e+03 Score=29.05 Aligned_cols=329 Identities=17% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHhhhhhhhHHHHHHHhhhhccCCCCHHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 005704 91 VDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERN 170 (682)
Q Consensus 91 ID~LTkRsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~~~le~E~~kL~~el~~l~~el~~lknq~~~~~~Lkerl 170 (682)
||.-...-|..-..+=.++|.|..|-----.|+.....+.- ++..|.+-+..|+.|-.--..--.+ .+.|+
T Consensus 851 ~~~~~~~~~~~~~v~k~~~kvl~~a~~re~~le~~c~~qa~------~i~ql~~lv~qyk~e~~~~~~~~~~---~~~ki 921 (1320)
T PLN03188 851 VDGSESAEKSKKQVPKAVEKVLAGAIRREMALEEFCTKQAS------EITQLNRLVQQYKHERECNAIIGQT---REDKI 921 (1320)
T ss_pred ccCcccccchhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHH------HHHHHHHHHHHhhhhhhhhHHHhhh---hhhhH
Q ss_pred HHHHHHHHHh----------------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Q 005704 171 RQLEQQMEEK----------------VKEIVEIKQRGLAEENQKTLEILQEREQALQ--------DQLRQAKDSVATMQK 226 (682)
Q Consensus 171 ~~lE~~~e~~----------------~~~~~~~~E~el~~~~eek~~~~~ere~~L~--------~ql~~ae~~l~eL~~ 226 (682)
..||.-++.. -...++++..---.++.-+++ ++.-+.++. ..-+-+...|.+|++
T Consensus 922 ~~l~~~~dg~l~~~~~~~~~~~~~~~~~~~~~~~y~~~p~~~~~~~e-~~~~~~e~~~~~~~~d~~ErEvll~eI~dlr~ 1000 (1320)
T PLN03188 922 IRLESLMDGVLSKEDFLEEELASLMHEHKLLKEKYENHPEVLRTKIE-LKRVQDELEHYRNFYDMGEREVLLEEIQDLRS 1000 (1320)
T ss_pred HHHhhhcccccchhhhhhhhhhhhhhhHHHHHHHhhcChhhhhhhHH-HHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Q ss_pred HHHHH----------------------------------------HHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHH
Q 005704 227 LHELA----------------------------------------QSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTR 266 (682)
Q Consensus 227 ~le~~----------------------------------------Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R 266 (682)
.|.-. ..+|..-+.+.-+....+..=-+.+..|||..++.
T Consensus 1001 qL~~~~d~s~~s~~~~~~~l~l~y~~~~~~~~~~~~i~e~~~~~~e~~l~~er~~w~e~es~wislteelr~eles~r~l 1080 (1320)
T PLN03188 1001 QLQYYIDSSLPSARKRNSLLKLTYSCEPSQAPPLNTIPESTDESPEKKLEQERLRWTEAESKWISLAEELRTELDASRAL 1080 (1320)
T ss_pred HHHhhcccccchhhhccchhhhhhhcCccccccccccccccccchhHHHHHHHHHHHHHhhhheechHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH---HHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Q 005704 267 LLSLQREKD---LLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEI---KK 340 (682)
Q Consensus 267 ~~~LE~e~E---~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~---~~ 340 (682)
+..++.|++ .+-+||..|-.-+ |...+.+...-+.++..-.+|.+--++...-+++.+...+..= ..
T Consensus 1081 ~Ekl~~EL~~eK~c~eel~~a~q~a-------m~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~ 1153 (1320)
T PLN03188 1081 AEKQKHELDTEKRCAEELKEAMQMA-------MEGHARMLEQYADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAE 1153 (1320)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhccccCccchhhhhhcchhhhchHHHH--HHHHhhhhhHHH
Q 005704 341 LNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESL--LLDKNRKMEHEL 418 (682)
Q Consensus 341 L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~iEf~~~d~~~~~~a~~~~~~~~LE~l--Ll~kNrkL~~eL 418 (682)
..-+..+..++..|+.++++ +..-+|.|=.-||.. .......+... |+=|-|..+.-+
T Consensus 1154 -~~f~~alaae~s~l~~erek-----er~~~~~enk~l~~q--------------lrdtaeav~aagellvrl~eaeea~ 1213 (1320)
T PLN03188 1154 -SKFINALAAEISALKVEREK-----ERRYLRDENKSLQAQ--------------LRDTAEAVQAAGELLVRLKEAEEAL 1213 (1320)
T ss_pred -HHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhHHHHHH--------------HhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 005704 419 TQLKVKLSEKTSLLETAEGKIAELTAKI-NEQQKLIQKL 456 (682)
Q Consensus 419 t~LR~~~~~l~~~l~~l~~~~~~l~~el-~~~~~l~~kL 456 (682)
+.........+++.+.+.+++..|..+. .+...+++.|
T Consensus 1214 ~~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~q~~ 1252 (1320)
T PLN03188 1214 TVAQKRAMDAEQEAAEAYKQIDKLKRKHENEISTLNQLV 1252 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=24.29 E-value=3.4e+02 Score=24.72 Aligned_cols=47 Identities=26% Similarity=0.360 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHH
Q 005704 509 ICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKI 555 (682)
Q Consensus 509 vt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEki 555 (682)
|=.|.++|...+.+|-.++..+++.+.++-.|-..|+=.|-+|-++.
T Consensus 6 iFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL 52 (114)
T COG4467 6 IFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERL 52 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHh
No 499
>PRK11020 hypothetical protein; Provisional
Probab=24.16 E-value=5.7e+02 Score=23.54 Aligned_cols=62 Identities=18% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchHH-HHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 005704 217 AKDSVATMQKLHELAQSQLFEVRAQSDEE-RVAKQSEVNLLMDEVERA-QTRLLSLQREKDLLR 278 (682)
Q Consensus 217 ae~~l~eL~~~le~~Q~eL~~l~~k~~ee-~~a~~aEle~l~~DLEra-~~R~~~LE~e~E~Lr 278 (682)
.+..|+.|...++..+..+..+..+.|.+ .+....|++-|...+++. ..+...|..+-..|.
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~~~~lske~~~l~ 66 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEVQSQKLSKEAQKLM 66 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>COG5346 Predicted membrane protein [Function unknown]
Probab=24.10 E-value=2e+02 Score=26.82 Aligned_cols=101 Identities=18% Similarity=0.167 Sum_probs=0.0
Q ss_pred hhhhHhhHHHHHHhhhcccccccccCCCCccccccCCCCchhhHHHHHhhhhhcChhhhhhHhHHHHHhhhcCcchhHHH
Q 005704 545 KADNVQLYGKIRFVQDYNNEKVISRGSKKYAEDLESGFTSDIESKYKKMYEDDINPFAAFSKKERDQRYKELGIRDRITL 624 (682)
Q Consensus 545 k~DN~kLyEkiRylqsy~~~~~~~~~~~~~~~~~~~~~~~d~e~~Y~~~YE~~L~Pf~~F~~~E~~r~~~~l~~~er~~l 624 (682)
+.+-.++|--+-|...|-. .+|+.+.+ ++|-+.|-+.++-+.+.-.+|++. +=-...+..=
T Consensus 18 ~~~~~~e~~~n~~~k~F~~-------------~LPpp~~l---~qYnsI~pnt~~rimaMAekEQah---rH~~~~k~~~ 78 (136)
T COG5346 18 KTFSSNEPDNNFYRKKFEH-------------ILPPPDLL---SQYNSIYPNTLQRIMAMAEKEQAH---RHAIDLKNLK 78 (136)
T ss_pred HHHhhccHHHHHHHHHhcc-------------cCCCHHHH---HHHHhhcCCHHHHHHHHHHHHHHH---HHHHHHhhhH
Q ss_pred hhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 005704 625 SSGRFLLGNKYARTFAFFYTILLHVLVFTCLYRMSALSYL 664 (682)
Q Consensus 625 ~~~r~vl~nr~~R~~f~~Y~~~LH~lv~~~ly~~~~~~~~ 664 (682)
.-.|-.+--+++|.+..++-++|-+.+|..+....+.+++
T Consensus 79 ~q~r~~~~~~~tril~liFgi~LVvsi~~~tla~~~~Gtv 118 (136)
T COG5346 79 IQRRGQLYAKLTRILLLIFGIFLVVSIFPKTLASLAGGTV 118 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH
Done!