Query 005704
Match_columns 682
No_of_seqs 222 out of 397
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 05:05:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005704.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005704hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 98.4 5E-07 1.7E-11 111.4 11.9 18 138-155 858-875 (1184)
2 1i84_S Smooth muscle myosin he 98.1 8.2E-06 2.8E-10 100.6 11.8 76 206-285 865-940 (1184)
3 2v71_A Nuclear distribution pr 97.3 0.022 7.4E-07 55.1 19.1 85 197-281 34-125 (189)
4 3na7_A HP0958; flagellar bioge 97.1 0.13 4.6E-06 52.2 24.8 136 204-374 52-187 (256)
5 2v71_A Nuclear distribution pr 96.8 0.36 1.2E-05 46.6 22.7 56 407-462 100-155 (189)
6 3vkg_A Dynein heavy chain, cyt 96.6 0.95 3.2E-05 60.6 32.2 83 250-336 2020-2102(3245)
7 3swk_A Vimentin; cytoskeleton, 96.5 0.023 7.8E-07 48.2 10.6 78 208-285 3-83 (86)
8 3ol1_A Vimentin; structural ge 96.3 0.047 1.6E-06 49.1 12.5 83 203-285 18-103 (119)
9 3na7_A HP0958; flagellar bioge 96.3 0.73 2.5E-05 46.7 22.6 70 301-379 94-163 (256)
10 3o0z_A RHO-associated protein 96.0 1.1 3.9E-05 42.2 21.9 37 251-287 76-112 (168)
11 2dfs_A Myosin-5A; myosin-V, in 95.4 0.22 7.4E-06 60.7 16.5 35 251-285 970-1004(1080)
12 2dfs_A Myosin-5A; myosin-V, in 95.0 0.46 1.6E-05 57.8 18.0 10 104-113 706-715 (1080)
13 1x79_B RAB GTPase binding effe 94.9 0.32 1.1E-05 42.9 11.9 72 196-281 36-107 (112)
14 3vkg_A Dynein heavy chain, cyt 94.6 5.2 0.00018 53.7 27.2 22 76-97 1860-1881(3245)
15 3o0z_A RHO-associated protein 94.5 2.6 9E-05 39.8 17.6 123 400-561 8-133 (168)
16 4gkw_A Spindle assembly abnorm 93.4 4.2 0.00014 36.4 18.9 131 366-557 25-158 (167)
17 2v4h_A NF-kappa-B essential mo 92.8 2.2 7.6E-05 37.3 12.8 84 424-550 25-108 (110)
18 2fxo_A Myosin heavy chain, car 92.4 6.1 0.00021 35.7 17.6 29 119-155 3-31 (129)
19 3ghg_A Fibrinogen alpha chain; 92.3 1 3.6E-05 49.3 12.5 52 415-466 108-160 (562)
20 2v66_B Nuclear distribution pr 89.8 7.1 0.00024 34.4 13.2 69 207-282 5-73 (111)
21 2efr_A General control protein 89.7 13 0.00044 34.7 21.7 16 202-217 74-89 (155)
22 1ik9_A DNA repair protein XRCC 89.7 5.1 0.00017 39.4 13.7 51 112-162 113-164 (213)
23 3u1c_A Tropomyosin alpha-1 cha 89.7 9.3 0.00032 33.0 14.1 64 253-334 11-74 (101)
24 3oja_B Anopheles plasmodium-re 89.5 8.3 0.00028 43.2 17.5 39 251-289 544-582 (597)
25 2b9c_A Striated-muscle alpha t 89.5 9.9 0.00034 35.1 14.8 36 253-288 82-117 (147)
26 3tnu_B Keratin, type II cytosk 89.4 3.5 0.00012 37.2 11.4 66 400-465 59-124 (129)
27 2fxo_A Myosin heavy chain, car 88.9 13 0.00044 33.5 15.4 52 407-458 74-125 (129)
28 3tnu_A Keratin, type I cytoske 88.9 3.5 0.00012 37.3 11.1 65 400-464 61-125 (131)
29 3tnu_A Keratin, type I cytoske 88.3 2.8 9.6E-05 38.0 10.0 54 308-361 49-102 (131)
30 2eqb_B RAB guanine nucleotide 88.1 12 0.0004 32.1 14.8 21 264-284 75-95 (97)
31 2efr_A General control protein 86.6 21 0.0007 33.3 23.4 55 313-380 100-154 (155)
32 3oja_B Anopheles plasmodium-re 86.4 7.7 0.00026 43.5 14.6 59 408-466 522-580 (597)
33 3i00_A HIP-I, huntingtin-inter 86.4 4.9 0.00017 35.9 10.2 72 308-381 12-83 (120)
34 3tnu_B Keratin, type II cytosk 85.7 6.7 0.00023 35.3 11.0 36 511-546 75-110 (129)
35 2ocy_A RAB guanine nucleotide 85.7 23 0.00078 32.9 16.3 32 250-281 114-145 (154)
36 3s4r_A Vimentin; alpha-helix, 85.7 6.4 0.00022 33.5 10.1 68 305-374 17-92 (93)
37 3ghg_A Fibrinogen alpha chain; 85.4 11 0.00036 41.6 14.0 24 363-386 173-196 (562)
38 3jsv_C NF-kappa-B essential mo 84.6 11 0.00037 32.1 10.8 40 424-463 3-42 (94)
39 1ic2_A Tropomyosin alpha chain 83.8 14 0.00047 30.4 11.2 21 253-273 50-70 (81)
40 2eqb_B RAB guanine nucleotide 82.9 14 0.00049 31.6 11.0 29 501-529 66-94 (97)
41 3mq7_A Bone marrow stromal ant 82.9 16 0.00055 32.1 11.4 38 250-287 70-107 (121)
42 2zqm_A Prefoldin beta subunit 81.8 25 0.00085 30.5 13.5 39 501-539 67-105 (117)
43 1gk4_A Vimentin; intermediate 81.8 15 0.0005 30.5 10.7 66 400-465 10-75 (84)
44 1ic2_A Tropomyosin alpha chain 81.8 16 0.00056 30.0 10.9 62 253-332 8-69 (81)
45 1fxk_A Prefoldin; archaeal pro 81.6 22 0.00076 30.3 12.3 39 501-539 62-100 (107)
46 3q8t_A Beclin-1; autophagy, AT 81.5 24 0.00083 30.1 14.7 34 207-240 62-95 (96)
47 2ocy_A RAB guanine nucleotide 80.2 38 0.0013 31.5 19.4 41 247-287 54-94 (154)
48 1gk4_A Vimentin; intermediate 80.1 8.4 0.00029 32.0 8.6 50 313-362 3-52 (84)
49 1deq_A Fibrinogen (alpha chain 79.8 30 0.001 36.6 14.4 63 306-385 136-198 (390)
50 3u59_A Tropomyosin beta chain; 79.7 28 0.00097 29.8 13.8 29 253-281 67-95 (101)
51 2v4h_A NF-kappa-B essential mo 79.5 31 0.0011 30.1 12.6 39 248-286 66-104 (110)
52 3mq9_A Bone marrow stromal ant 79.5 25 0.00085 38.1 14.8 23 206-228 398-420 (471)
53 3w03_C DNA repair protein XRCC 79.3 2.8 9.6E-05 40.2 6.0 47 111-157 132-179 (184)
54 3ol1_A Vimentin; structural ge 79.1 34 0.0012 30.3 13.4 38 137-177 20-57 (119)
55 3u59_A Tropomyosin beta chain; 78.4 31 0.0011 29.5 13.6 61 253-331 11-71 (101)
56 1t2k_D Cyclic-AMP-dependent tr 76.6 7.4 0.00025 30.3 6.8 43 511-553 15-57 (61)
57 1l8d_A DNA double-strand break 76.5 36 0.0012 29.3 12.4 38 505-542 65-102 (112)
58 3u1c_A Tropomyosin alpha-1 cha 76.3 36 0.0012 29.2 16.0 21 260-280 74-94 (101)
59 3bas_A Myosin heavy chain, str 74.9 36 0.0012 28.5 11.6 20 136-155 13-32 (89)
60 3cvf_A Homer-3, homer protein 74.8 19 0.00066 29.6 9.0 39 510-548 40-78 (79)
61 3mov_A Lamin-B1; LMNB1, B-type 74.4 3.5 0.00012 35.4 4.6 58 310-369 11-68 (95)
62 3swy_A Cyclic nucleotide-gated 74.0 11 0.00038 27.8 6.6 42 135-176 3-45 (46)
63 3mq9_A Bone marrow stromal ant 73.9 88 0.003 33.7 17.2 47 115-161 368-421 (471)
64 1x8y_A Lamin A/C; structural p 73.5 5.1 0.00017 33.6 5.4 50 313-362 5-54 (86)
65 1x8y_A Lamin A/C; structural p 73.2 25 0.00087 29.3 9.7 65 400-464 12-76 (86)
66 3mud_A DNA repair protein XRCC 72.4 10 0.00035 36.0 7.7 40 112-157 116-155 (175)
67 3s4r_A Vimentin; alpha-helix, 71.9 45 0.0015 28.2 11.5 43 504-546 49-91 (93)
68 3swf_A CGMP-gated cation chann 71.6 17 0.00059 29.5 7.7 49 134-182 4-53 (74)
69 3q4f_C DNA repair protein XRCC 71.5 4.5 0.00015 38.4 5.0 44 111-154 141-185 (186)
70 1jnm_A Proto-oncogene C-JUN; B 71.4 8.2 0.00028 30.1 5.9 42 510-551 14-55 (62)
71 4h22_A Leucine-rich repeat fli 69.7 15 0.00051 31.7 7.4 55 507-561 26-80 (103)
72 1m1j_C Fibrinogen gamma chain; 69.4 94 0.0032 33.4 15.5 57 403-460 79-135 (409)
73 3jsv_C NF-kappa-B essential mo 68.3 26 0.00088 29.8 8.5 43 246-288 42-84 (94)
74 3hnw_A Uncharacterized protein 67.8 23 0.00078 32.3 8.9 48 414-461 87-134 (138)
75 1gd2_E Transcription factor PA 66.5 17 0.00057 29.3 6.8 42 513-554 24-65 (70)
76 3hnw_A Uncharacterized protein 65.3 81 0.0028 28.6 14.0 30 255-284 72-101 (138)
77 2wt7_A Proto-oncogene protein 64.9 19 0.00066 28.1 6.8 41 512-552 17-57 (63)
78 1go4_E MAD1 (mitotic arrest de 64.9 38 0.0013 29.2 9.1 69 259-328 13-92 (100)
79 2e7s_A RAB guanine nucleotide 64.4 5.3 0.00018 36.3 3.8 46 501-546 86-131 (135)
80 3swk_A Vimentin; cytoskeleton, 64.0 56 0.0019 27.2 9.9 15 367-381 71-85 (86)
81 3m91_A Proteasome-associated A 63.8 19 0.00065 27.2 6.1 43 503-545 8-50 (51)
82 1ci6_A Transcription factor AT 63.6 22 0.00077 27.8 6.9 42 510-551 15-56 (63)
83 3oja_A Leucine-rich immune mol 62.6 1.7E+02 0.0058 31.5 16.6 31 250-280 455-485 (487)
84 3he5_B Synzip2; heterodimeric 62.5 38 0.0013 24.3 7.1 44 419-462 6-49 (52)
85 3i00_A HIP-I, huntingtin-inter 62.3 70 0.0024 28.4 10.7 43 139-181 17-60 (120)
86 3mov_A Lamin-B1; LMNB1, B-type 62.0 54 0.0018 27.9 9.6 66 400-465 21-86 (95)
87 3mq7_A Bone marrow stromal ant 61.5 85 0.0029 27.6 13.8 39 517-555 70-108 (121)
88 1l8d_A DNA double-strand break 61.5 77 0.0026 27.1 13.0 33 250-282 70-102 (112)
89 1deq_A Fibrinogen (alpha chain 60.9 97 0.0033 32.8 13.1 41 400-440 51-91 (390)
90 2lw1_A ABC transporter ATP-bin 60.4 69 0.0023 26.6 9.9 59 212-270 22-82 (89)
91 3s84_A Apolipoprotein A-IV; fo 60.4 1.5E+02 0.005 30.0 28.3 18 270-287 174-191 (273)
92 3bas_A Myosin heavy chain, str 60.2 74 0.0025 26.5 10.6 17 209-225 67-83 (89)
93 1wt6_A Myotonin-protein kinase 59.6 73 0.0025 26.2 9.8 47 194-240 27-73 (81)
94 2e7s_A RAB guanine nucleotide 59.2 18 0.0006 32.9 6.3 40 248-287 43-82 (135)
95 4dk0_A Putative MACA; alpha-ha 58.1 54 0.0019 34.0 11.1 39 250-288 114-152 (369)
96 2dgc_A Protein (GCN4); basic d 57.6 20 0.00068 28.1 5.6 35 512-546 24-58 (63)
97 3a7p_A Autophagy protein 16; c 57.6 1.2E+02 0.004 28.0 12.8 29 90-119 30-58 (152)
98 2yy0_A C-MYC-binding protein; 56.5 17 0.00058 27.6 4.8 34 250-283 18-51 (53)
99 1t6f_A Geminin; coiled-coil, c 56.5 16 0.00055 25.2 4.1 29 525-553 7-35 (37)
100 2jee_A YIIU; FTSZ, septum, coi 56.0 85 0.0029 25.9 11.3 29 429-457 12-40 (81)
101 1zxa_A CGMP-dependent protein 54.0 20 0.00068 28.6 5.0 44 503-546 10-53 (67)
102 3qh9_A Liprin-beta-2; coiled-c 52.8 72 0.0025 26.2 8.2 54 413-466 23-76 (81)
103 2k48_A Nucleoprotein; viral pr 52.4 88 0.003 27.0 9.1 31 145-175 36-67 (107)
104 2ke4_A CDC42-interacting prote 52.1 71 0.0024 27.3 8.7 56 65-121 5-60 (98)
105 2v66_B Nuclear distribution pr 51.9 1.2E+02 0.0042 26.5 14.9 37 207-243 51-87 (111)
106 1gu4_A CAAT/enhancer binding p 51.9 47 0.0016 27.2 7.2 39 508-546 26-64 (78)
107 3cve_A Homer protein homolog 1 51.0 96 0.0033 25.0 10.7 39 510-548 34-72 (72)
108 3nmd_A CGMP dependent protein 50.7 45 0.0015 26.9 6.6 42 505-546 27-68 (72)
109 1a93_B MAX protein, coiled coi 50.5 22 0.00075 24.5 4.0 29 531-559 6-34 (34)
110 4fi5_A Nucleoprotein; structur 50.4 58 0.002 28.4 7.7 60 30-96 21-83 (113)
111 3trt_A Vimentin; cytoskeleton, 49.8 56 0.0019 26.2 7.4 51 496-546 1-77 (77)
112 3ghg_C Fibrinogen gamma chain; 49.7 1.8E+02 0.006 31.3 13.2 56 405-460 80-135 (411)
113 2b9c_A Striated-muscle alpha t 49.3 1.3E+02 0.0045 27.5 10.7 17 312-328 102-118 (147)
114 3fpp_A Macrolide-specific effl 49.3 59 0.002 33.3 9.5 38 250-287 113-150 (341)
115 1hjb_A Ccaat/enhancer binding 48.7 49 0.0017 27.7 6.9 39 509-547 27-65 (87)
116 3q8t_A Beclin-1; autophagy, AT 48.6 1.2E+02 0.0042 25.6 14.4 88 413-546 8-95 (96)
117 1go4_E MAD1 (mitotic arrest de 48.6 61 0.0021 27.9 7.6 60 501-560 16-96 (100)
118 1jcd_A Major outer membrane li 48.4 78 0.0027 23.9 7.3 18 251-268 32-49 (52)
119 1m1j_A Fibrinogen alpha subuni 48.3 3E+02 0.01 29.9 16.5 48 419-466 114-161 (491)
120 1lwu_C Fibrinogen gamma chain; 48.0 39 0.0013 35.2 7.6 54 408-461 4-57 (323)
121 3oja_A Leucine-rich immune mol 47.6 2.9E+02 0.01 29.6 16.8 18 313-330 444-461 (487)
122 3iox_A AGI/II, PA; alpha helix 47.2 3E+02 0.01 30.2 14.5 36 251-286 73-108 (497)
123 2q6q_A Spindle POLE BODY compo 47.1 79 0.0027 25.1 7.3 44 422-465 9-52 (74)
124 3m91_A Proteasome-associated A 47.1 79 0.0027 23.8 7.1 22 408-429 22-43 (51)
125 2xv5_A Lamin-A/C; structural p 46.9 90 0.0031 25.2 8.0 54 413-466 2-55 (74)
126 2jee_A YIIU; FTSZ, septum, coi 45.6 1.3E+02 0.0044 24.9 9.2 54 409-462 13-66 (81)
127 2ic6_A Nucleocapsid protein; h 44.9 71 0.0024 26.2 7.0 56 32-94 6-64 (78)
128 1wlq_A Geminin; coiled-coil; 2 44.8 67 0.0023 26.6 6.9 55 503-560 19-76 (83)
129 2k48_A Nucleoprotein; viral pr 44.6 1.5E+02 0.0051 25.6 9.3 71 255-338 32-102 (107)
130 3nmd_A CGMP dependent protein 44.6 1.1E+02 0.0037 24.7 8.0 37 429-465 32-68 (72)
131 2oto_A M protein; helical coil 44.2 1.9E+02 0.0064 26.4 14.9 19 137-155 29-47 (155)
132 2i1j_A Moesin; FERM, coiled-co 44.1 42 0.0014 37.8 7.7 21 407-427 509-529 (575)
133 3c3f_A Alpha/beta peptide with 43.7 30 0.001 23.6 3.8 28 519-546 2-29 (34)
134 2no2_A HIP-I, huntingtin-inter 43.7 1.6E+02 0.0055 25.5 13.2 37 407-443 6-42 (107)
135 1nkp_B MAX protein, MYC proto- 43.4 62 0.0021 26.4 6.8 54 96-152 12-69 (83)
136 1kd8_B GABH BLL, GCN4 acid bas 43.2 30 0.001 23.9 3.8 28 519-546 2-29 (36)
137 1dh3_A Transcription factor CR 42.9 49 0.0017 25.1 5.6 32 515-546 19-50 (55)
138 2oqq_A Transcription factor HY 42.7 91 0.0031 22.4 6.4 29 518-546 10-38 (42)
139 2w83_C C-JUN-amino-terminal ki 42.5 1.4E+02 0.0047 24.3 8.4 64 400-464 8-71 (77)
140 3qh9_A Liprin-beta-2; coiled-c 42.4 1.4E+02 0.0049 24.5 9.8 24 204-227 53-76 (81)
141 3swy_A Cyclic nucleotide-gated 41.5 1E+02 0.0035 22.6 7.2 32 312-343 6-37 (46)
142 4emc_A Monopolin complex subun 40.9 85 0.0029 30.0 8.0 41 413-453 24-64 (190)
143 3m48_A General control protein 40.5 31 0.0011 23.5 3.5 27 520-546 2-28 (33)
144 3he4_A Synzip6; heterodimeric 40.4 55 0.0019 23.8 5.0 25 413-437 21-45 (56)
145 3he4_A Synzip6; heterodimeric 40.3 81 0.0028 22.9 5.9 29 432-460 26-54 (56)
146 2ic9_A Nucleocapsid protein; h 40.1 1.1E+02 0.0036 26.1 7.6 58 32-96 6-66 (96)
147 1kd8_A GABH AIV, GCN4 acid bas 39.3 30 0.001 23.9 3.3 28 519-546 2-29 (36)
148 2f1m_A Acriflavine resistance 39.2 1.2E+02 0.004 30.0 9.6 37 249-285 96-132 (277)
149 2qyw_A Vesicle transport throu 38.4 1.5E+02 0.0051 25.3 8.7 58 306-363 17-76 (102)
150 2xdj_A Uncharacterized protein 38.1 1.4E+02 0.0047 24.7 8.0 42 419-460 23-64 (83)
151 2oxj_A Hybrid alpha/beta pepti 37.8 42 0.0014 22.9 3.8 28 519-546 2-29 (34)
152 2zqm_A Prefoldin beta subunit 37.8 1.4E+02 0.0049 25.4 8.8 34 195-228 74-107 (117)
153 1deb_A APC protein, adenomatou 37.5 1.3E+02 0.0043 22.5 7.4 46 508-560 7-52 (54)
154 2lw1_A ABC transporter ATP-bin 37.2 1E+02 0.0035 25.5 7.3 26 303-328 21-46 (89)
155 3uul_A Utrophin; spectrin repe 37.2 1.8E+02 0.0062 24.2 12.3 22 84-105 4-25 (118)
156 1f5n_A Interferon-induced guan 37.1 3.5E+02 0.012 30.4 13.9 95 124-227 488-582 (592)
157 2bni_A General control protein 36.9 46 0.0016 22.8 3.9 28 519-546 2-29 (34)
158 3c3g_A Alpha/beta peptide with 36.7 46 0.0016 22.6 3.8 27 520-546 2-28 (33)
159 1m1j_C Fibrinogen gamma chain; 36.6 4.2E+02 0.014 28.3 14.2 27 203-229 89-115 (409)
160 1fxk_C Protein (prefoldin); ar 36.5 2.2E+02 0.0075 25.0 13.4 41 418-458 3-43 (133)
161 2wq1_A General control protein 36.4 46 0.0016 22.6 3.8 27 520-546 2-28 (33)
162 3cvf_A Homer-3, homer protein 35.8 1.8E+02 0.0062 23.8 9.9 20 263-282 11-30 (79)
163 2oqq_A Transcription factor HY 35.7 99 0.0034 22.2 5.6 35 506-540 5-39 (42)
164 2ic6_A Nucleocapsid protein; h 34.3 1.9E+02 0.0065 23.6 8.7 18 208-225 55-72 (78)
165 1m1j_B Fibrinogen beta chain; 34.2 4.9E+02 0.017 28.3 18.1 31 250-280 167-197 (464)
166 4h22_A Leucine-rich repeat fli 34.0 1.5E+02 0.0052 25.5 7.7 24 301-324 20-43 (103)
167 3a7p_A Autophagy protein 16; c 33.1 2.9E+02 0.01 25.4 13.1 68 208-286 71-138 (152)
168 3he5_A Synzip1; heterodimeric 33.0 1.3E+02 0.0045 21.3 6.1 17 414-430 8-24 (49)
169 2i1j_A Moesin; FERM, coiled-co 32.9 82 0.0028 35.4 7.8 14 99-112 185-198 (575)
170 3iox_A AGI/II, PA; alpha helix 32.8 5.2E+02 0.018 28.2 15.2 36 194-229 30-65 (497)
171 1gu4_A CAAT/enhancer binding p 31.7 77 0.0026 25.9 5.4 31 516-546 41-71 (78)
172 1uo4_A General control protein 31.7 63 0.0021 22.1 3.9 28 519-546 2-29 (34)
173 2hy6_A General control protein 31.6 63 0.0022 22.0 3.9 28 519-546 2-29 (34)
174 3swf_A CGMP-gated cation chann 31.4 2E+02 0.0067 23.3 7.5 30 312-341 8-37 (74)
175 2ke4_A CDC42-interacting prote 31.2 1.4E+02 0.0049 25.4 7.3 66 265-330 15-88 (98)
176 4dzn_A Coiled-coil peptide CC- 30.7 1E+02 0.0035 20.2 4.6 27 520-546 4-30 (33)
177 1gd2_E Transcription factor PA 30.7 1.9E+02 0.0064 23.1 7.4 40 337-378 30-69 (70)
178 2w6a_A ARF GTPase-activating p 30.7 1.1E+02 0.0036 23.7 5.5 33 512-544 28-60 (63)
179 1hjb_A Ccaat/enhancer binding 30.3 83 0.0028 26.3 5.5 32 515-546 40-71 (87)
180 1ci6_A Transcription factor AT 30.3 1.6E+02 0.0053 22.9 6.8 10 439-448 46-55 (63)
181 2pnv_A Small conductance calci 30.3 1E+02 0.0035 22.3 5.2 29 201-229 12-40 (43)
182 3ra3_B P2F; coiled coil domain 30.2 82 0.0028 19.9 4.0 23 515-537 4-26 (28)
183 1jcd_A Major outer membrane li 30.0 82 0.0028 23.8 4.8 28 519-546 5-32 (52)
184 4dk0_A Putative MACA; alpha-ha 29.8 1.6E+02 0.0054 30.3 9.1 39 247-285 118-156 (369)
185 1wt6_A Myotonin-protein kinase 29.6 1.8E+02 0.0062 23.9 7.1 40 412-451 27-66 (81)
186 3efg_A Protein SLYX homolog; x 29.5 1.8E+02 0.0061 23.6 7.3 42 424-465 15-56 (78)
187 1s1c_X RHO-associated, coiled- 29.2 1.9E+02 0.0063 23.3 7.0 47 412-460 2-48 (71)
188 4fi5_A Nucleoprotein; structur 29.2 2.7E+02 0.0092 24.2 8.5 19 208-226 72-90 (113)
189 3ghg_C Fibrinogen gamma chain; 28.8 5.6E+02 0.019 27.4 14.8 34 196-229 82-115 (411)
190 1xaw_A Occludin; coiled-coil, 28.6 2.8E+02 0.0097 25.1 9.1 29 88-123 65-93 (140)
191 1uii_A Geminin; human, DNA rep 28.5 1.8E+02 0.0063 24.0 7.1 56 501-559 25-80 (83)
192 3efg_A Protein SLYX homolog; x 28.2 1.5E+02 0.0052 24.1 6.6 49 511-559 14-62 (78)
193 1deb_A APC protein, adenomatou 28.0 1.9E+02 0.0064 21.6 7.2 42 415-456 9-50 (54)
194 4gkw_A Spindle assembly abnorm 28.0 3.3E+02 0.011 24.4 19.8 33 301-333 102-134 (167)
195 3he5_B Synzip2; heterodimeric 27.6 1.7E+02 0.0058 21.0 6.4 41 413-453 7-47 (52)
196 2zxx_A Geminin; coiled-coil, c 26.8 1.8E+02 0.0063 23.8 6.7 50 503-555 15-64 (79)
197 1jnm_A Proto-oncogene C-JUN; B 26.8 1.1E+02 0.0037 23.6 5.3 26 533-558 23-48 (62)
198 3m9b_A Proteasome-associated A 26.7 69 0.0023 32.1 5.1 43 504-546 54-96 (251)
199 2ic9_A Nucleocapsid protein; h 26.7 2.9E+02 0.01 23.4 8.7 19 208-226 55-73 (96)
200 2akf_A Coronin-1A; coiled coil 26.7 90 0.0031 20.6 3.8 25 522-546 3-27 (32)
201 3fpp_A Macrolide-specific effl 26.2 1.4E+02 0.0048 30.3 7.8 36 250-285 120-155 (341)
202 2xdj_A Uncharacterized protein 25.3 2.8E+02 0.0097 22.8 8.9 27 428-454 25-51 (83)
203 3s84_A Apolipoprotein A-IV; fo 24.8 5.3E+02 0.018 25.8 25.2 24 324-347 164-187 (273)
204 1gk6_A Vimentin; intermediate 24.8 1.9E+02 0.0065 22.1 6.3 46 419-464 3-48 (59)
205 2wvr_A Geminin; DNA replicatio 24.2 1.7E+02 0.0059 28.1 7.1 47 514-560 104-153 (209)
206 2j5u_A MREC protein; bacterial 23.8 50 0.0017 33.1 3.6 34 134-167 23-56 (255)
207 4etp_A Kinesin-like protein KA 23.6 1.7E+02 0.006 31.1 8.0 53 413-465 7-59 (403)
208 1uix_A RHO-associated kinase; 23.3 2.9E+02 0.0099 22.1 8.0 46 415-460 3-48 (71)
209 2pms_C Pneumococcal surface pr 23.3 3.1E+02 0.01 24.4 8.1 21 137-157 13-33 (125)
210 3e98_A GAF domain of unknown f 23.2 1.1E+02 0.0038 30.5 6.0 43 504-557 65-107 (252)
211 3u06_A Protein claret segregat 22.9 1.9E+02 0.0065 31.0 8.2 54 412-465 6-59 (412)
212 3iv1_A Tumor susceptibility ge 22.5 3.2E+02 0.011 22.3 10.0 64 401-464 10-73 (78)
213 3he5_A Synzip1; heterodimeric 22.2 1.7E+02 0.0057 20.8 4.8 33 528-560 6-38 (49)
214 1nkp_B MAX protein, MYC proto- 21.8 1.7E+02 0.006 23.6 6.0 45 501-545 37-81 (83)
215 3htk_A Structural maintenance 21.8 2.6E+02 0.0087 21.0 8.2 49 413-461 9-57 (60)
216 3ra3_A P1C; coiled coil domain 21.7 1.3E+02 0.0044 19.0 3.7 23 523-545 5-27 (28)
217 1gmj_A ATPase inhibitor; coile 21.6 3.1E+02 0.011 22.7 7.2 44 508-558 34-77 (84)
218 2r2v_A GCN4 leucine zipper; co 21.5 1.2E+02 0.0041 20.7 3.8 28 519-546 2-29 (34)
219 1vcs_A Vesicle transport throu 21.5 2.7E+02 0.0094 23.5 7.4 43 337-379 39-94 (102)
220 3lay_A Zinc resistance-associa 21.5 4.4E+02 0.015 24.7 9.4 74 73-148 69-142 (175)
221 1fjk_A Cardiac phospholamban; 21.4 79 0.0027 23.0 3.1 19 638-656 30-48 (52)
222 1m1j_B Fibrinogen beta chain; 20.6 8.4E+02 0.029 26.5 14.9 28 403-430 87-114 (464)
223 2zdi_C Prefoldin subunit alpha 20.2 4.7E+02 0.016 23.5 9.2 104 129-241 1-141 (151)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.44 E-value=5e-07 Score=111.40 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=7.4
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 005704 138 ENRKMKIELEEYRTEATH 155 (682)
Q Consensus 138 E~~kL~~el~~l~~el~~ 155 (682)
++..|++++.+++..+..
T Consensus 858 El~~L~~eL~el~~~L~~ 875 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQK 875 (1184)
T ss_dssp HCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444433333
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.10 E-value=8.2e-06 Score=100.64 Aligned_cols=76 Identities=8% Similarity=0.073 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 206 REQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAN 285 (682)
Q Consensus 206 re~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~ 285 (682)
+...+..++..++..+.+++..+...+.++..+..... ....++..+..++++...+...++.+.+.|..+++...
T Consensus 865 eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~----~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~elee~e 940 (1184)
T 1i84_S 865 ELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQ----AETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEE 940 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444333332111 11223333344444444455555555555555554433
No 3
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.27 E-value=0.022 Score=55.15 Aligned_cols=85 Identities=15% Similarity=0.116 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH-------HHhhHHHHHHHHHHHHHHHHHHHH
Q 005704 197 QKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEE-------RVAKQSEVNLLMDEVERAQTRLLS 269 (682)
Q Consensus 197 eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee-------~~a~~aEle~l~~DLEra~~R~~~ 269 (682)
++...--.+-+.+|..+|..+++.+.+|+..+.....++..++.|+..- ......|+..+....+....++.+
T Consensus 34 ~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ire 113 (189)
T 2v71_A 34 VEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRE 113 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333445566777777777777777777777777777777776544 333456666666666666777777
Q ss_pred HHHHHHHHHHHH
Q 005704 270 LQREKDLLRSQL 281 (682)
Q Consensus 270 LE~e~E~Lr~eL 281 (682)
||..|+.|....
T Consensus 114 LEq~NDdlEr~~ 125 (189)
T 2v71_A 114 LEQANDDLERAK 125 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHhhHHHHHH
Confidence 777666665443
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.14 E-value=0.13 Score=52.20 Aligned_cols=136 Identities=18% Similarity=0.210 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005704 204 QEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQS 283 (682)
Q Consensus 204 ~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~ 283 (682)
.....++..++..++..+.+++...+..+.++...+ . .-|+..+..+++.+..++..++.+.-.+-.+++.
T Consensus 52 ~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~--~-------~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~ 122 (256)
T 3na7_A 52 EEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK--S-------ERELRSLNIEEDIAKERSNQANREIENLQNEIKR 122 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS--S-------SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--C-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666677777777777777777776665433 1 2345555555555555555555555555544432
Q ss_pred hhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005704 284 ANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARP 363 (682)
Q Consensus 284 a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~ 363 (682)
.. ..+..+...+..++..+...+......++.+...+..+......+...+..-
T Consensus 123 ~~-------------------------~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i~~~- 176 (256)
T 3na7_A 123 KS-------------------------EKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEPK- 176 (256)
T ss_dssp HH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHH-
T ss_pred HH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH-
Confidence 21 1133333334444444444444455555555555555444444444433210
Q ss_pred ChhhHHHHHHH
Q 005704 364 TSKMVDDLRKK 374 (682)
Q Consensus 364 ~~sDyeelK~E 374 (682)
-..-|+-|++-
T Consensus 177 lL~~Yerir~~ 187 (256)
T 3na7_A 177 IYSFYERIRRW 187 (256)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 13457777763
No 5
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.78 E-value=0.36 Score=46.60 Aligned_cols=56 Identities=7% Similarity=0.086 Sum_probs=34.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005704 407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILK 462 (682)
Q Consensus 407 Ll~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~ 462 (682)
|...+..|...|..|...+++++.........+..+...+...=..|+=||.+|..
T Consensus 100 l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~E 155 (189)
T 2v71_A 100 TRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDE 155 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555556666666666666666666666666666666666666666666653
No 6
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.63 E-value=0.95 Score=60.59 Aligned_cols=83 Identities=16% Similarity=0.157 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 005704 250 QSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSN 329 (682)
Q Consensus 250 ~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~ 329 (682)
.+++...+..|..++.++.+++.+++.|+.+++++....+... ......+..+..-++-|.-|.+|..|...+...
T Consensus 2020 e~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~----~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~ 2095 (3245)
T 3vkg_A 2020 ENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIK----TESSKVKNKVDRSIALLDNLNSERGRWEQQSEN 2095 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhccccHHHHHHH
Confidence 3455555566666666666666666666666665544332100 000112222333344566667777776666665
Q ss_pred HHHHHHH
Q 005704 330 EREQHMN 336 (682)
Q Consensus 330 ~r~~~~~ 336 (682)
.......
T Consensus 2096 l~~~~~~ 2102 (3245)
T 3vkg_A 2096 FNTQMST 2102 (3245)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5554433
No 7
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=96.48 E-value=0.023 Score=48.20 Aligned_cols=78 Identities=18% Similarity=0.297 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005704 208 QALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEE---RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSA 284 (682)
Q Consensus 208 ~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee---~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a 284 (682)
.+|+.|+..+......+...++..+..+.+++.||+++ .....+++..+..|++.+..-..+||..++.|+++|.-.
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888899999999999999998 445568899999999999999999999999999999865
Q ss_pred h
Q 005704 285 N 285 (682)
Q Consensus 285 ~ 285 (682)
+
T Consensus 83 k 83 (86)
T 3swk_A 83 K 83 (86)
T ss_dssp T
T ss_pred h
Confidence 4
No 8
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=96.33 E-value=0.047 Score=49.10 Aligned_cols=83 Identities=17% Similarity=0.269 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 203 LQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEER---VAKQSEVNLLMDEVERAQTRLLSLQREKDLLRS 279 (682)
Q Consensus 203 ~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~---~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~ 279 (682)
|+.....|+++|..+......|...++..+..+.+++.||+.+. ....+++..+..|++.+.....+||.+++.|++
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~e 97 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQE 97 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence 45556678888888888888888888888999999999999884 444678899999999999999999999999999
Q ss_pred HHHhhh
Q 005704 280 QLQSAN 285 (682)
Q Consensus 280 eL~~a~ 285 (682)
+|.-.+
T Consensus 98 El~FLK 103 (119)
T 3ol1_A 98 EIAFLK 103 (119)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 997644
No 9
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.27 E-value=0.73 Score=46.72 Aligned_cols=70 Identities=14% Similarity=0.257 Sum_probs=35.4
Q ss_pred hhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH
Q 005704 301 YLENSLSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQ 379 (682)
Q Consensus 301 ~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk 379 (682)
.+..++......+..++.++..+...++.... .+..++..+..+...+...+..+.. ...+++.++..|.
T Consensus 94 aL~kEie~~~~~i~~lE~eile~~e~ie~~~~----~l~~~~~~l~~~~~~l~~~~~~~~~-----~~~e~~~e~~~l~ 163 (256)
T 3na7_A 94 SLNIEEDIAKERSNQANREIENLQNEIKRKSE----KQEDLKKEMLELEKLALELESLVEN-----EVKNIKETQQIIF 163 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 44444555555556666665555555443332 3344444444544444444444443 4566666666554
No 10
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=95.96 E-value=1.1 Score=42.24 Aligned_cols=37 Identities=8% Similarity=0.059 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005704 251 SEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDE 287 (682)
Q Consensus 251 aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~ 287 (682)
++++--..+.-.....+.+++.++..|..+|......
T Consensus 76 a~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~ 112 (168)
T 3o0z_A 76 AILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHN 112 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444555566666666666666554443
No 11
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.36 E-value=0.22 Score=60.69 Aligned_cols=35 Identities=31% Similarity=0.461 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 251 SEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAN 285 (682)
Q Consensus 251 aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~ 285 (682)
++++.+..+++.+..++..|+.+++.|+.++..+.
T Consensus 970 ~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ 1004 (1080)
T 2dfs_A 970 ERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQ 1004 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555666666666665555443
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.04 E-value=0.46 Score=57.82 Aligned_cols=10 Identities=30% Similarity=0.630 Sum_probs=6.7
Q ss_pred HHHHHhhhhc
Q 005704 104 AFLNIYQKLY 113 (682)
Q Consensus 104 aFl~~Y~~L~ 113 (682)
.|+.=|+.|.
T Consensus 706 eF~~RY~~L~ 715 (1080)
T 2dfs_A 706 EFFSRYRVLM 715 (1080)
T ss_dssp HHHHHHTTTS
T ss_pred HHHHHHHHHC
Confidence 3777777765
No 13
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=94.93 E-value=0.32 Score=42.95 Aligned_cols=72 Identities=18% Similarity=0.232 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 196 NQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKD 275 (682)
Q Consensus 196 ~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E 275 (682)
|.++...-......|..++...+..+.+|+. .+..-......+|..|+.+-++...++..|+++|+
T Consensus 36 w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq--------------~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd 101 (112)
T 1x79_B 36 IKQSSEDSSHQISALVLRAQASEILLEELQQ--------------GLSQAKRDVQEQMAVLMQSREQVSEELVRLQKDND 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHTC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4444444444444555555555555555544 44444455678899999999999999999999999
Q ss_pred HHHHHH
Q 005704 276 LLRSQL 281 (682)
Q Consensus 276 ~Lr~eL 281 (682)
.|.+.-
T Consensus 102 ~L~Gk~ 107 (112)
T 1x79_B 102 SLQGKH 107 (112)
T ss_dssp ------
T ss_pred chhhhh
Confidence 998653
No 14
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.61 E-value=5.2 Score=53.74 Aligned_cols=22 Identities=14% Similarity=0.034 Sum_probs=12.2
Q ss_pred HHHhhHHHHHHhHHHHHHHhhh
Q 005704 76 KLSLFNSLLKGYQEEVDNLTKR 97 (682)
Q Consensus 76 kl~~~~~LLK~yQ~EID~LTkR 97 (682)
.+..+......+..-|..++.+
T Consensus 1860 ~~~~~~~~~~~iH~sv~~~s~~ 1881 (3245)
T 3vkg_A 1860 HRDAVVSSLVYIHQTIGEANIR 1881 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666555555443
No 15
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.48 E-value=2.6 Score=39.75 Aligned_cols=123 Identities=15% Similarity=0.199 Sum_probs=92.2
Q ss_pred hchHHHHHHHHhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCC
Q 005704 400 MSKMESLLLDKNRKMEHE---LTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDD 476 (682)
Q Consensus 400 ~~~LE~lLl~kNrkL~~e---Lt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~ 476 (682)
...|+..|.+-|.+|..+ .+.+|.++.++...+..+......+...+..+..--..||.++..++.
T Consensus 8 i~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa----------- 76 (168)
T 3o0z_A 8 LSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQA----------- 76 (168)
T ss_dssp --CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 456788888888888765 457788888888888888888888888888888888888888877664
Q ss_pred CccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHH
Q 005704 477 WDLSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIR 556 (682)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiR 556 (682)
.|.--..-|.+--..+.+|+..+..+...+..++.-...+..||-+|-|+|-
T Consensus 77 ----------------------------~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~ 128 (168)
T 3o0z_A 77 ----------------------------ILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLN 128 (168)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666777788888888888888888888888888888888887
Q ss_pred Hhhhc
Q 005704 557 FVQDY 561 (682)
Q Consensus 557 ylqsy 561 (682)
-|+-.
T Consensus 129 ~lEKe 133 (168)
T 3o0z_A 129 HSEKE 133 (168)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76653
No 16
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=93.38 E-value=4.2 Score=36.43 Aligned_cols=131 Identities=24% Similarity=0.334 Sum_probs=85.3
Q ss_pred hhHHHHHHHHHHHHhccccCccchhhhhhcchhhhchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 366 KMVDDLRKKVKILQAVGYNSIEAEDWEVATNDEEMSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAK 445 (682)
Q Consensus 366 sDyeelK~EL~~Lk~iEf~~~d~~~~~~a~~~~~~~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~e 445 (682)
.+.++++-||+|.-.+ .+.+..++++ |.-||--.+.+|..||..+..++..++..+..+.+-..+
T Consensus 25 ~eleEnqeEL~iVgkM--------------L~EEqgKVDQ-lqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~q 89 (167)
T 4gkw_A 25 KQLEENQEELEIVGNM--------------LREEQGKVDQ-LQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQ 89 (167)
T ss_dssp HHHHHHHHHHHHHHHH--------------HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--------------HHHHHhhHHH-HHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHH
Confidence 4567777888877665 2233456777 889999999999999999999999999888888776665
Q ss_pred HHHHHHHHH---HHHHHHHhhcccCCCCCCCCCCCccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 005704 446 INEQQKLIQ---KLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQSSMLKVICNQRDRFRARLRE 522 (682)
Q Consensus 446 l~~~~~l~~---kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~siL~Ivt~QRDRfr~r~~E 522 (682)
-..+.--+. .||.||-.- .+|..-+|.-.--+|. |
T Consensus 90 QnQQSlDiRKLrELEADLKEK---------------------------------------DsMVe~LT~TiG~LrK---E 127 (167)
T 4gkw_A 90 QNQQSLDMRKLGELEADLKEK---------------------------------------DSMVESLTETIGILRK---E 127 (167)
T ss_dssp HHHHHHHHHHTHHHHHTHHHH---------------------------------------HHHHHHHHHHHHHHHH---H
T ss_pred HhHhhhhHHHHHHHHhHHhhh---------------------------------------hHHHHHHHHHHHHHHH---H
Confidence 555444443 467776533 3344444444444443 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHH
Q 005704 523 TEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRF 557 (682)
Q Consensus 523 LE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRy 557 (682)
||.+.-+......+ .++|+-.|-.+-|++-.
T Consensus 128 LEdEklK~~E~MdS----FE~LkvENE~vkerl~m 158 (167)
T 4gkw_A 128 LENEKLKAAENMDS----FEKLSMENENLKEKIAH 158 (167)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHhhhhHhHHHHHHH
Confidence 55555444444433 45667777777677644
No 17
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=92.76 E-value=2.2 Score=37.25 Aligned_cols=84 Identities=18% Similarity=0.222 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccccCCCCCCCcch
Q 005704 424 KLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKADKKHTYPDQDQS 503 (682)
Q Consensus 424 ~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (682)
+++.|..++..+++-+.....++.+++..+.++..++++
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~----------------------------------------- 63 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMET----------------------------------------- 63 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH-----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------
Confidence 455666666666666666677777777777777766643
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHh
Q 005704 504 SMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQ 550 (682)
Q Consensus 504 siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~k 550 (682)
+|++..|-|=|+.--.--...--+...++..|..++..|+..|-+
T Consensus 64 --I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~ 108 (110)
T 2v4h_A 64 --VPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNK 108 (110)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 456667766666666555555555666666666666677665544
No 18
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=92.39 E-value=6.1 Score=35.66 Aligned_cols=29 Identities=24% Similarity=0.291 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHH
Q 005704 119 YPALASIAEQDLKLSELESENRKMKIELEEYRTEATH 155 (682)
Q Consensus 119 ~PlLe~s~~~~~~~~~le~E~~kL~~el~~l~~el~~ 155 (682)
.|+|..+..- .++.++..++..++..+..
T Consensus 3 KPLL~~~~~e--------~E~~~~~eel~~lke~l~k 31 (129)
T 2fxo_A 3 SPLLKSAERE--------KEMASMKEEFTRLKEALEK 31 (129)
T ss_dssp HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
T ss_pred CCchhhhhhH--------HHHHHHHHHHHHHHHHHHH
Confidence 5888775442 2555555566555555544
No 19
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=92.31 E-value=1 Score=49.33 Aligned_cols=52 Identities=17% Similarity=0.149 Sum_probs=41.1
Q ss_pred hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 005704 415 EHELT-QLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSS 466 (682)
Q Consensus 415 ~~eLt-~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~ 466 (682)
-++++ +||..+..++.+++..-..+..|+.-|+++...|++||.||......
T Consensus 108 ynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirs 160 (562)
T 3ghg_A 108 YNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRS 160 (562)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555 77777888888877777888888889999999999999999866543
No 20
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=89.80 E-value=7.1 Score=34.37 Aligned_cols=69 Identities=14% Similarity=0.121 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 207 EQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQ 282 (682)
Q Consensus 207 e~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~ 282 (682)
.++|..+...+...+..++.++...+.+. .......+.|+..++..-+....++.+||..|+.|-..--
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~~~~e~-------~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R 73 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEHQYAQS-------YKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKR 73 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 34444444444444444444444333221 1123445677777777777777777888877777765533
No 21
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=89.74 E-value=13 Score=34.68 Aligned_cols=16 Identities=31% Similarity=0.495 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 005704 202 ILQEREQALQDQLRQA 217 (682)
Q Consensus 202 ~~~ere~~L~~ql~~a 217 (682)
.++++.+.|..++.++
T Consensus 74 ~yEeqIk~L~~kLKEA 89 (155)
T 2efr_A 74 KYEEEIKVLSDKLKEA 89 (155)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333443333333
No 22
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=89.70 E-value=5.1 Score=39.44 Aligned_cols=51 Identities=14% Similarity=0.242 Sum_probs=31.5
Q ss_pred hccCCCCHHHHHHHHHHHhh-hhhhHHhhHHHHHHHHHHHHHHHHhhhhHHH
Q 005704 112 LYEAPDPYPALASIAEQDLK-LSELESENRKMKIELEEYRTEATHLKNQQST 162 (682)
Q Consensus 112 L~eaPDP~PlLe~s~~~~~~-~~~le~E~~kL~~el~~l~~el~~lknq~~~ 162 (682)
|..+|||..++....+.... ++.++.++..|..++.+++.++.++..|...
T Consensus 113 L~~~~d~~e~i~elfd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~ 164 (213)
T 1ik9_A 113 LEKVENPAEVIRELIAYALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEK 164 (213)
T ss_dssp CEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678998874333343322 2346667777777777777777776655443
No 23
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=89.69 E-value=9.3 Score=32.96 Aligned_cols=64 Identities=16% Similarity=0.184 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 253 VNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNERE 332 (682)
Q Consensus 253 le~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~ 332 (682)
|.++..|.|.|..|+..++..+..+..... ..+.++.++.+.+..++.++...+..|.....
T Consensus 11 m~~lk~e~e~a~drae~~e~~~k~~e~~~~------------------~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~ 72 (101)
T 3u1c_A 11 MQMLKLDKENALDRAEQAEADKKAAEERSK------------------QLEDDIVQLEKQLRVTEDSRDQVLEELHKSED 72 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777776666655533 34445555566677777777766666655444
Q ss_pred HH
Q 005704 333 QH 334 (682)
Q Consensus 333 ~~ 334 (682)
.+
T Consensus 73 kL 74 (101)
T 3u1c_A 73 SL 74 (101)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.54 E-value=8.3 Score=43.21 Aligned_cols=39 Identities=15% Similarity=0.275 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 005704 251 SEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAG 289 (682)
Q Consensus 251 aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~ 289 (682)
.|++.+...++..+.++.++.+++..++.++.+......
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556666777777777888888888888888777665553
No 25
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=89.52 E-value=9.9 Score=35.14 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005704 253 VNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEA 288 (682)
Q Consensus 253 le~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~ 288 (682)
+.++..||+++..|+..++..+..|..+|..++...
T Consensus 82 l~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nl 117 (147)
T 2b9c_A 82 LVIIESDLERAEERAELSEGKCAELEEELKTVTNNL 117 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999998766654
No 26
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=89.38 E-value=3.5 Score=37.24 Aligned_cols=66 Identities=20% Similarity=0.229 Sum_probs=58.7
Q ss_pred hchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005704 400 MSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS 465 (682)
Q Consensus 400 ~~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~ 465 (682)
..+||..|.+...+...++..++..+..++..+..+..++.....+++.+-..--.|+..|.+...
T Consensus 59 ~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatYRk 124 (129)
T 3tnu_B 59 CANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIATYRK 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888899999999999999999999999999999999999999999888888889888887653
No 27
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=88.91 E-value=13 Score=33.49 Aligned_cols=52 Identities=17% Similarity=0.307 Sum_probs=33.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLED 458 (682)
Q Consensus 407 Ll~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~ 458 (682)
|..+.-.|+..+..+...+.+.......+......+..++.+++.-+..+|.
T Consensus 74 L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~ 125 (129)
T 2fxo_A 74 LIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLEL 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556666667766666666666666666666666666666666655554
No 28
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=88.86 E-value=3.5 Score=37.33 Aligned_cols=65 Identities=12% Similarity=0.151 Sum_probs=58.0
Q ss_pred hchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005704 400 MSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY 464 (682)
Q Consensus 400 ~~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~ 464 (682)
..+||..|.+...++..++..++..+..++..+..+..++.....+++.+-..--.|+..|.+..
T Consensus 61 ~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYR 125 (131)
T 3tnu_A 61 KASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYR 125 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788889999999999999999999999999999999999999999988888888888887765
No 29
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=88.27 E-value=2.8 Score=37.99 Aligned_cols=54 Identities=13% Similarity=0.199 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005704 308 AKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQA 361 (682)
Q Consensus 308 ~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~ 361 (682)
.++.++..+...+..|+.++.+....+..++..++..+..+...+..++...+.
T Consensus 49 ~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ 102 (131)
T 3tnu_A 49 NLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQ 102 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555555555555555555555444444443
No 30
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=88.07 E-value=12 Score=32.09 Aligned_cols=21 Identities=14% Similarity=0.183 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 005704 264 QTRLLSLQREKDLLRSQLQSA 284 (682)
Q Consensus 264 ~~R~~~LE~e~E~Lr~eL~~a 284 (682)
+..-..++.+|++|+.+|...
T Consensus 75 r~e~~~~e~kn~~L~~qL~d~ 95 (97)
T 2eqb_B 75 RKEKYAIEILNKRLTEQLREK 95 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 444567899999999999764
No 31
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=86.60 E-value=21 Score=33.31 Aligned_cols=55 Identities=15% Similarity=0.199 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh
Q 005704 313 ISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQA 380 (682)
Q Consensus 313 i~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~ 380 (682)
+..|+.++.+++..|...+..+......|...+..+.. + .+++..+..++.-|+.
T Consensus 100 v~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~----~---------~~~~~~~~~~~~~~~~ 154 (155)
T 2efr_A 100 VTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEE----L---------LSKNYHLENEVARLKK 154 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H---------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----c---------ccchHHHHHHHHHhhc
Confidence 44455555555555555555555444455444433321 1 2456666666666653
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.41 E-value=7.7 Score=43.49 Aligned_cols=59 Identities=10% Similarity=0.008 Sum_probs=32.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 005704 408 LDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSS 466 (682)
Q Consensus 408 l~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~ 466 (682)
...+.+.+.+..........++.+...++..+......+.++++.++.+..++......
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 522 LRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555555555555555555555543
No 33
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=86.38 E-value=4.9 Score=35.91 Aligned_cols=72 Identities=21% Similarity=0.288 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhc
Q 005704 308 AKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAV 381 (682)
Q Consensus 308 ~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~i 381 (682)
.+|..|..|..++..|...+..+.......+..|..++..+...++.-...++.. ..|-+.|+.++..|+..
T Consensus 12 ~rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a--~~e~e~Lr~e~~~l~~~ 83 (120)
T 3i00_A 12 EKDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQA--ADDCEFLRAELDELRRQ 83 (120)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 4466689999999999999999988898999999999999988888887776665 56889999999998764
No 34
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=85.68 E-value=6.7 Score=35.31 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 511 NQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 511 ~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
.+...+...+..||.++.+.+..+...-.|+..|-.
T Consensus 75 ~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Lln 110 (129)
T 3tnu_B 75 LALKDARNKLAELEEALQKAKQDMARLLREYQELMN 110 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 456667778888888888888888777777766654
No 35
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=85.65 E-value=23 Score=32.94 Aligned_cols=32 Identities=16% Similarity=0.140 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 250 QSEVNLLMDEVERAQTRLLSLQREKDLLRSQL 281 (682)
Q Consensus 250 ~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL 281 (682)
.-..+.|...+.....++..++..+..|+.=+
T Consensus 114 e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~ 145 (154)
T 2ocy_A 114 EILNKRLTEQLREKDTLLDTLTLQLKNLKKVM 145 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555666666666666666544
No 36
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=85.65 E-value=6.4 Score=33.53 Aligned_cols=68 Identities=13% Similarity=0.103 Sum_probs=45.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHH
Q 005704 305 SLSAKEKIISELNSELHNIETALSNEREQ--------HMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKK 374 (682)
Q Consensus 305 el~~ke~ei~~L~~e~~~Le~~L~~~r~~--------~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~E 374 (682)
.++.+=..|+.|+.+|..|+..+...+.. +...|..|..+++......+.++.++..+ +.|.+++|..
T Consensus 17 RlAsyIdKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl--~~~~~~~k~K 92 (93)
T 3s4r_A 17 RFANLIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNL--AEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhh
Confidence 35555455788888888888887766554 44566677777777766667776666665 4566666654
No 37
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=85.37 E-value=11 Score=41.57 Aligned_cols=24 Identities=17% Similarity=0.066 Sum_probs=19.6
Q ss_pred CChhhHHHHHHHHHHHHhccccCc
Q 005704 363 PTSKMVDDLRKKVKILQAVGYNSI 386 (682)
Q Consensus 363 ~~~sDyeelK~EL~~Lk~iEf~~~ 386 (682)
.+..+|+++.++|..+-++.+-..
T Consensus 173 vd~~sY~~~QKQLeQv~a~dL~p~ 196 (562)
T 3ghg_A 173 VDLKDYEDQQKQLEQVIAKDLLPS 196 (562)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCCS
T ss_pred cchHHHHHHHHHHHHHhhcccCCc
Confidence 456799999999999998866543
No 38
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=84.61 E-value=11 Score=32.05 Aligned_cols=40 Identities=13% Similarity=0.095 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005704 424 KLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKG 463 (682)
Q Consensus 424 ~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~ 463 (682)
+++.|...+...++-+......+.+++..+.+++.+++++
T Consensus 3 ~~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i 42 (94)
T 3jsv_C 3 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETV 42 (94)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888888888888888888888888877654
No 39
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=83.78 E-value=14 Score=30.45 Aligned_cols=21 Identities=19% Similarity=0.218 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005704 253 VNLLMDEVERAQTRLLSLQRE 273 (682)
Q Consensus 253 le~l~~DLEra~~R~~~LE~e 273 (682)
+..+..||+++..++.++...
T Consensus 50 iq~lE~eld~~ee~l~~a~~k 70 (81)
T 1ic2_A 50 LKGTEDELDKYSESLKDAQEK 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555444443
No 40
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=82.95 E-value=14 Score=31.58 Aligned_cols=29 Identities=10% Similarity=0.192 Sum_probs=23.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 501 DQSSMLKVICNQRDRFRARLRETEEEVRQ 529 (682)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~r~~ELE~el~~ 529 (682)
..+.|+.--...|..+..||..|..+|..
T Consensus 66 EAN~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 66 EANNMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666766688889999999999988864
No 41
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=82.94 E-value=16 Score=32.11 Aligned_cols=38 Identities=24% Similarity=0.227 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005704 250 QSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDE 287 (682)
Q Consensus 250 ~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~ 287 (682)
+..+..+..++...++.+.+++.++|.||.+-......
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r 107 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVR 107 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhH
Confidence 34466666666666777777777777777766544433
No 42
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=81.85 E-value=25 Score=30.46 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=25.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTA 539 (682)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~ 539 (682)
+-....+.|....+.+..++..|+.++.....++..++.
T Consensus 67 ~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~ 105 (117)
T 2zqm_A 67 TKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTA 105 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677877777777766666666666665555555444
No 43
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=81.77 E-value=15 Score=30.54 Aligned_cols=66 Identities=8% Similarity=0.093 Sum_probs=60.1
Q ss_pred hchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005704 400 MSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS 465 (682)
Q Consensus 400 ~~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~ 465 (682)
..+||..|.+...++..++..++..+..++..+..+..++.....+++.+-...-.|+..+.+...
T Consensus 10 ~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRk 75 (84)
T 1gk4_A 10 NESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRK 75 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999999999998999999887763
No 44
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=81.75 E-value=16 Score=30.01 Aligned_cols=62 Identities=23% Similarity=0.287 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 253 VNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNERE 332 (682)
Q Consensus 253 le~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~ 332 (682)
|..+..|++.|..|+..++..+........ ..+.++..+.+.|..|+.++...+..|.....
T Consensus 8 m~~lk~e~d~a~~~~~~~e~~l~~~e~~~~------------------~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~ 69 (81)
T 1ic2_A 8 MQMLKLDKENALDRAEQAEADKKAAEERSK------------------QLEDELVALQKKLKGTEDELDKYSESLKDAQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777666666666555443 33444555555677777776666665544433
No 45
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=81.60 E-value=22 Score=30.29 Aligned_cols=39 Identities=8% Similarity=0.218 Sum_probs=28.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTA 539 (682)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~ 539 (682)
+-....|.|....+-...++..|+.++.....++..++.
T Consensus 62 ~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~ 100 (107)
T 1fxk_A 62 AKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888777777777777777666666665554
No 46
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=81.50 E-value=24 Score=30.08 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 207 EQALQDQLRQAKDSVATMQKLHELAQSQLFEVRA 240 (682)
Q Consensus 207 e~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~ 240 (682)
-..+..++-.....+..+.+.+..++.+|.-|+.
T Consensus 62 yn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~K 95 (96)
T 3q8t_A 62 YSEFKRQQLELDDELKSVENQMRYAQMQLDKLKK 95 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3566778888888888999999988888887764
No 47
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=80.21 E-value=38 Score=31.47 Aligned_cols=41 Identities=15% Similarity=0.269 Sum_probs=31.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005704 247 VAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDE 287 (682)
Q Consensus 247 ~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~ 287 (682)
..+.+|+.-++.+|...+.+-..+|.+...+..+|+..+.+
T Consensus 54 ~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTas 94 (154)
T 2ocy_A 54 SDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS 94 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888888888888888888888765544
No 48
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=80.13 E-value=8.4 Score=32.05 Aligned_cols=50 Identities=14% Similarity=0.256 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 005704 313 ISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQAR 362 (682)
Q Consensus 313 i~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~ 362 (682)
+..+.+.+..|+.++.+....+..++..++..+..+...+..++...+.+
T Consensus 3 l~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q 52 (84)
T 1gk4_A 3 VDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARH 52 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777778888777777777777777777777666666666665554
No 49
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=79.81 E-value=30 Score=36.57 Aligned_cols=63 Identities=8% Similarity=0.144 Sum_probs=34.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhccccC
Q 005704 306 LSAKEKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKILQAVGYNS 385 (682)
Q Consensus 306 l~~ke~ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~Lk~iEf~~ 385 (682)
+..++..|..+..++++|+-.++--+..+...+. ..++-.-++.+|+++.++|.-+.++.+-.
T Consensus 136 ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC~-----------------~~l~~~vD~e~ye~qqKQL~qv~a~~llP 198 (390)
T 1deq_A 136 INLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCS-----------------RALEHKVDLEDYKNQQKQLEQVIAINLLP 198 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc-----------------hhhhhhccHHHHHHHHHHHHhhhhhcccc
Confidence 3444555666777777777666333333222111 11111123568888888888777775543
No 50
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=79.67 E-value=28 Score=29.76 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 253 VNLLMDEVERAQTRLLSLQREKDLLRSQL 281 (682)
Q Consensus 253 le~l~~DLEra~~R~~~LE~e~E~Lr~eL 281 (682)
+..+...|+.+...+..+|.++..|...+
T Consensus 67 l~~a~~kLe~~ek~~~~AE~evasLnRri 95 (101)
T 3u59_A 67 VKEAQEKLEQAEKKATDAEAEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555566666666665554
No 51
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=79.48 E-value=31 Score=30.08 Aligned_cols=39 Identities=13% Similarity=0.248 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005704 248 AKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAND 286 (682)
Q Consensus 248 a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s 286 (682)
...+++++...|.+..+.--..+..+.++|..+|+....
T Consensus 66 vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~ 104 (110)
T 2v4h_A 66 VLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQR 104 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHH
Confidence 345666666666666555555555555555555554443
No 52
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=79.46 E-value=25 Score=38.14 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005704 206 REQALQDQLRQAKDSVATMQKLH 228 (682)
Q Consensus 206 re~~L~~ql~~ae~~l~eL~~~l 228 (682)
....||++|.++++.+..+++.-
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~ 420 (471)
T 3mq9_A 398 VTHLLQQELTEAQKGFQDVEAQA 420 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHh
Confidence 33445566666555555555443
No 53
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=79.27 E-value=2.8 Score=40.23 Aligned_cols=47 Identities=13% Similarity=0.170 Sum_probs=33.6
Q ss_pred hhccCCCCHHHHHHHHHHH-hhhhhhHHhhHHHHHHHHHHHHHHHHhh
Q 005704 111 KLYEAPDPYPALASIAEQD-LKLSELESENRKMKIELEEYRTEATHLK 157 (682)
Q Consensus 111 ~L~eaPDP~PlLe~s~~~~-~~~~~le~E~~kL~~el~~l~~el~~lk 157 (682)
+|..+|||.++....++-. .++..|..+|..|+++++.|+.+.+++.
T Consensus 132 ~L~~v~~p~e~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l 179 (184)
T 3w03_C 132 NLEKVENPAEVIRELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQ 179 (184)
T ss_dssp ECEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeECCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778999999776555533 3445677788888888888887777643
No 54
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=79.11 E-value=34 Score=30.28 Aligned_cols=38 Identities=13% Similarity=0.326 Sum_probs=16.0
Q ss_pred HhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 005704 137 SENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQM 177 (682)
Q Consensus 137 ~E~~kL~~el~~l~~el~~lknq~~~~~~Lkerl~~lE~~~ 177 (682)
.++..||.++..+..+-+.+ ...++.++.-+.++..++
T Consensus 20 ~~I~~LR~qid~~~~e~a~l---~leldn~~~~~edfk~Ky 57 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARV---EVERDNLAEDIMRLREKL 57 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhh
Confidence 34445555555444443333 123333444444444444
No 55
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=78.40 E-value=31 Score=29.50 Aligned_cols=61 Identities=15% Similarity=0.200 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005704 253 VNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNER 331 (682)
Q Consensus 253 le~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r 331 (682)
|.++..+.|.|..|+..++..+..+..... ..+.++.++.+.+..++.++...+..+....
T Consensus 11 m~~lk~e~e~a~d~ae~~e~~~k~~e~~~~------------------~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~ 71 (101)
T 3u59_A 11 MQMLKLDKENAIDRAEQAEADKKQAEDRCK------------------QLEEEQQGLQKKLKGTEDEVEKYSESVKEAQ 71 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777777776666655443 3333444445556666666665555544443
No 56
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=76.63 E-value=7.4 Score=30.27 Aligned_cols=43 Identities=19% Similarity=0.269 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHH
Q 005704 511 NQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYG 553 (682)
Q Consensus 511 ~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyE 553 (682)
.=|+|-+.++.+|+.+...+......|+.++..|+..+..|-.
T Consensus 15 k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 15 RSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477888899999999999999999999999999997776643
No 57
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=76.54 E-value=36 Score=29.28 Aligned_cols=38 Identities=11% Similarity=0.183 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 505 MLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELE 542 (682)
Q Consensus 505 iL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~ 542 (682)
++.-+..+...++.++.+|..++......+..++.++.
T Consensus 65 ~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 65 LLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555544444444444
No 58
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=76.29 E-value=36 Score=29.17 Aligned_cols=21 Identities=14% Similarity=0.053 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005704 260 VERAQTRLLSLQREKDLLRSQ 280 (682)
Q Consensus 260 LEra~~R~~~LE~e~E~Lr~e 280 (682)
|+-+...+..+|.++..|...
T Consensus 74 Lee~ek~~~~aE~ev~~L~Rr 94 (101)
T 3u1c_A 74 LLFAEENAAKAESEVASLNRR 94 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444433
No 59
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=74.93 E-value=36 Score=28.48 Aligned_cols=20 Identities=10% Similarity=0.292 Sum_probs=10.8
Q ss_pred HHhhHHHHHHHHHHHHHHHH
Q 005704 136 ESENRKMKIELEEYRTEATH 155 (682)
Q Consensus 136 e~E~~kL~~el~~l~~el~~ 155 (682)
+.++..+..++..++..+..
T Consensus 13 eeEm~~~eeel~~lke~l~k 32 (89)
T 3bas_A 13 EEEMKEQLKQMDKMKEDLAK 32 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555565555555555544
No 60
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=74.84 E-value=19 Score=29.62 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005704 510 CNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADN 548 (682)
Q Consensus 510 t~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN 548 (682)
...|++++..+.-+-+.|..--..+..+|.-+.+|=.||
T Consensus 40 ~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL~~~~ 78 (79)
T 3cvf_A 40 RAERERARAEVGRAAQLLDVSLFELSELREGLARLAEAA 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccC
Confidence 344556666666666666666666666666666665544
No 61
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=74.35 E-value=3.5 Score=35.36 Aligned_cols=58 Identities=12% Similarity=0.188 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHH
Q 005704 310 EKIISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQARPTSKMVD 369 (682)
Q Consensus 310 e~ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDye 369 (682)
+.+|+.|+..+..|+.++.+....++.++..++..+..+...+..++...+.+ ..+|.
T Consensus 11 ~~~~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~~q--l~EYq 68 (95)
T 3mov_A 11 ENLYFQGQKESRACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQQ--LNDYE 68 (95)
T ss_dssp -------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 34466666667777777777777777777777766666666666666655544 34554
No 62
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=74.04 E-value=11 Score=27.79 Aligned_cols=42 Identities=26% Similarity=0.344 Sum_probs=34.3
Q ss_pred hHHhhHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHH
Q 005704 135 LESENRKMKIELEEYRTEATHLKNQQS-TIRRLEERNRQLEQQ 176 (682)
Q Consensus 135 le~E~~kL~~el~~l~~el~~lknq~~-~~~~Lkerl~~lE~~ 176 (682)
+|.-+.+|...++-|++.|+.+-+.+. .-.+|+.|+-.+|.+
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566778888899999999999888776 667888888888764
No 63
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=73.87 E-value=88 Score=33.69 Aligned_cols=47 Identities=15% Similarity=0.075 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHHHHhhh-------hhhHHhhHHHHHHHHHHHHHHHHhhhhHH
Q 005704 115 APDPYPALASIAEQDLKL-------SELESENRKMKIELEEYRTEATHLKNQQS 161 (682)
Q Consensus 115 aPDP~PlLe~s~~~~~~~-------~~le~E~~kL~~el~~l~~el~~lknq~~ 161 (682)
--||..+|..+.....++ .+...-..-|+++|+++++.|..+..|..
T Consensus 368 ~~t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (471)
T 3mq9_A 368 RQTVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAA 421 (471)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhh
Confidence 346777776655543321 12333344466677777777777666654
No 64
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=73.55 E-value=5.1 Score=33.62 Aligned_cols=50 Identities=26% Similarity=0.386 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 005704 313 ISELNSELHNIETALSNEREQHMNEIKKLNALLIEKEAALEDMKKELQAR 362 (682)
Q Consensus 313 i~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~ 362 (682)
|..|.+.+..|+.++.+....+..++..++..+..+...+..++...+.+
T Consensus 5 ie~L~~q~~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~q 54 (86)
T 1x8y_A 5 LSQLQCQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQ 54 (86)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555556666666666666666666666666555555555554443
No 65
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=73.17 E-value=25 Score=29.26 Aligned_cols=65 Identities=15% Similarity=0.153 Sum_probs=58.6
Q ss_pred hchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005704 400 MSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY 464 (682)
Q Consensus 400 ~~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~ 464 (682)
..+||..|.+-..++..++..++..+..++.++..+..++.....+++.+-...-.|+..+.+..
T Consensus 12 ~~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYR 76 (86)
T 1x8y_A 12 LAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYR 76 (86)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34788889999999999999999999999999999999999999999999888889999888765
No 66
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=72.40 E-value=10 Score=35.99 Aligned_cols=40 Identities=15% Similarity=0.242 Sum_probs=29.2
Q ss_pred hccCCCCHHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHhh
Q 005704 112 LYEAPDPYPALASIAEQDLKLSELESENRKMKIELEEYRTEATHLK 157 (682)
Q Consensus 112 L~eaPDP~PlLe~s~~~~~~~~~le~E~~kL~~el~~l~~el~~lk 157 (682)
|.+||+|+++.-..+.... ..+.+|..++++|++++...+
T Consensus 116 Lk~a~~paE~ireli~~Ae------rtV~kLqkeiD~LEDeL~~eK 155 (175)
T 3mud_A 116 LEKVENPAEVIRELICYCL------DTTAKNEKSIDDLEEKVAHAK 155 (175)
T ss_dssp CEECSCHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCChHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 4899999997766555433 377788888888888776644
No 67
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=71.94 E-value=45 Score=28.21 Aligned_cols=43 Identities=5% Similarity=0.157 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 504 SMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 504 siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
.+-|+.......+|..+..+..+..++.-++..++.++..+|.
T Consensus 49 ~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 49 RLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666666666666666666666666666666665554
No 68
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=71.56 E-value=17 Score=29.50 Aligned_cols=49 Identities=14% Similarity=0.266 Sum_probs=40.3
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHhHH
Q 005704 134 ELESENRKMKIELEEYRTEATHLKNQQS-TIRRLEERNRQLEQQMEEKVK 182 (682)
Q Consensus 134 ~le~E~~kL~~el~~l~~el~~lknq~~-~~~~Lkerl~~lE~~~e~~~~ 182 (682)
++|.-+.+|...++-|++.|+.+-+.+. .-.+|+.|+-.+|..+.....
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~~~~ 53 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKPLID 53 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 4777888999999999999999988876 678899999999887754433
No 69
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=71.47 E-value=4.5 Score=38.40 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=31.8
Q ss_pred hhccCCCCHHHHHHHHHHH-hhhhhhHHhhHHHHHHHHHHHHHHH
Q 005704 111 KLYEAPDPYPALASIAEQD-LKLSELESENRKMKIELEEYRTEAT 154 (682)
Q Consensus 111 ~L~eaPDP~PlLe~s~~~~-~~~~~le~E~~kL~~el~~l~~el~ 154 (682)
.|..+|+|+++..-.+... .++.+++.+|..|++||++|..+.+
T Consensus 141 ~L~~V~nPaE~irELi~~~L~~i~~L~a~N~hLqkENeRL~~e~~ 185 (186)
T 3q4f_C 141 NLEKVENPAEVIRELICYCLDTIAENQAKNEHLQKENERLLRDWN 185 (186)
T ss_dssp ECEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeeCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3678999999876655533 3455688888888888888776643
No 70
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=71.45 E-value=8.2 Score=30.14 Aligned_cols=42 Identities=26% Similarity=0.328 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhh
Q 005704 510 CNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQL 551 (682)
Q Consensus 510 t~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kL 551 (682)
..=|+|-+.++.+|+.++..+......|+.++..|+..+..|
T Consensus 14 ~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 14 SKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778888999999999999999999999999999865554
No 71
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=69.67 E-value=15 Score=31.74 Aligned_cols=55 Identities=20% Similarity=0.185 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHhhhc
Q 005704 507 KVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQDY 561 (682)
Q Consensus 507 ~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRylqsy 561 (682)
.-+.=|.|-++.++.++++.+.+.+++...+.++++.++.....|...+.++++-
T Consensus 26 sal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~ 80 (103)
T 4h22_A 26 TNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEA 80 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788999999999999999999999999999999999999999999998764
No 72
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=69.42 E-value=94 Score=33.41 Aligned_cols=57 Identities=18% Similarity=0.258 Sum_probs=46.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 403 MESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDI 460 (682)
Q Consensus 403 LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL 460 (682)
.+.. ..+.+++..++..+...+......+..|+..+..++..++.++..+..|+..+
T Consensus 79 ~e~~-tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~~ 135 (409)
T 1m1j_C 79 IEQL-TQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESHC 135 (409)
T ss_dssp HHHH-HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhhH-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3443 77888899999999888888888999999888888888888888888887644
No 73
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=68.33 E-value=26 Score=29.78 Aligned_cols=43 Identities=14% Similarity=0.206 Sum_probs=30.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005704 246 RVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEA 288 (682)
Q Consensus 246 ~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~ 288 (682)
.....+++++...|..+.+.--.-+..+.+.|..+|+.+....
T Consensus 42 i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~ 84 (94)
T 3jsv_C 42 VPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREF 84 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3445678888888888876666666666777777776665544
No 74
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=67.79 E-value=23 Score=32.33 Aligned_cols=48 Identities=33% Similarity=0.392 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 414 MEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDIL 461 (682)
Q Consensus 414 L~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~ 461 (682)
+..++..|+-.+...+.+++.+..++..+..++..++..+.+||..+.
T Consensus 87 ~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 87 KDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666666666666666666667777777777766654
No 75
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=66.46 E-value=17 Score=29.29 Aligned_cols=42 Identities=29% Similarity=0.255 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHH
Q 005704 513 RDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGK 554 (682)
Q Consensus 513 RDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEk 554 (682)
|.|-...+.+||.++..+......+..|...|+..+..|-..
T Consensus 24 ReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 24 RKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888899999999999988888888888888877777544
No 76
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=65.32 E-value=81 Score=28.63 Aligned_cols=30 Identities=13% Similarity=0.055 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005704 255 LLMDEVERAQTRLLSLQREKDLLRSQLQSA 284 (682)
Q Consensus 255 ~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a 284 (682)
.+....+.....+.++++++..|+.+|..+
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~ 101 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAA 101 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444433
No 77
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=64.93 E-value=19 Score=28.11 Aligned_cols=41 Identities=22% Similarity=0.271 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhH
Q 005704 512 QRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLY 552 (682)
Q Consensus 512 QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLy 552 (682)
=|.|-+..+.+|+.+...+......|+.+|..|+.....|-
T Consensus 17 cR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 17 CRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777788888999999888888888888888888554443
No 78
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=64.93 E-value=38 Score=29.16 Aligned_cols=69 Identities=13% Similarity=0.110 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc-----C----C--CCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHH
Q 005704 259 EVERAQTRLLSLQREKDLLRSQLQSANDEAGS-----R----N--SDTLDSNSYLENSLSAKEKIISELNSELHNIETAL 327 (682)
Q Consensus 259 DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~-----~----~--~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L 327 (682)
++...+.++.+|+++++.|+.+.+......+. . . -.-+-.++.-++... ....+..|..|+.+|...+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~-~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQR-LREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 44445555566666666666665544333221 0 0 001123333322222 3456777777777776654
Q ss_pred H
Q 005704 328 S 328 (682)
Q Consensus 328 ~ 328 (682)
.
T Consensus 92 ~ 92 (100)
T 1go4_E 92 R 92 (100)
T ss_dssp T
T ss_pred H
Confidence 4
No 79
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=64.41 E-value=5.3 Score=36.33 Aligned_cols=46 Identities=13% Similarity=0.174 Sum_probs=29.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
..+.|+.--...|..+..||..|+.++......+..++.++..||.
T Consensus 86 EAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~ 131 (135)
T 2e7s_A 86 EANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLKK 131 (135)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666667889999999999999999999999999998888876
No 80
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=63.95 E-value=56 Score=27.18 Aligned_cols=15 Identities=20% Similarity=0.527 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHhc
Q 005704 367 MVDDLRKKVKILQAV 381 (682)
Q Consensus 367 DyeelK~EL~~Lk~i 381 (682)
.++.|+.||.-||.+
T Consensus 71 kvesL~eEl~fLkk~ 85 (86)
T 3swk_A 71 KVESLQEEIAFLKKL 85 (86)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhc
Confidence 356667777777653
No 81
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=63.76 E-value=19 Score=27.17 Aligned_cols=43 Identities=14% Similarity=0.244 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005704 503 SSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTK 545 (682)
Q Consensus 503 ~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk 545 (682)
..-+--+..|-+.+-.||..|.+-|.....+|..|+.+++.|-
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455567889999999999999999999999999999998873
No 82
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=63.64 E-value=22 Score=27.80 Aligned_cols=42 Identities=19% Similarity=0.208 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhh
Q 005704 510 CNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQL 551 (682)
Q Consensus 510 t~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kL 551 (682)
+.=|.+-+.+..+|+.++..+......|+.+++.|+..+.-|
T Consensus 15 ~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 15 TRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444666777888999999999999999999999998844433
No 83
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=62.64 E-value=1.7e+02 Score=31.51 Aligned_cols=31 Identities=19% Similarity=0.024 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 250 QSEVNLLMDEVERAQTRLLSLQREKDLLRSQ 280 (682)
Q Consensus 250 ~aEle~l~~DLEra~~R~~~LE~e~E~Lr~e 280 (682)
..+++.+...++.|+++..++-.+-.-|-++
T Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (487)
T 3oja_A 455 KKLNGEADLALASANATLQELVVREQNLASQ 485 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHhcccHHHHHHHHHHHHHHh
Confidence 3445555555555666665555554444443
No 84
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=62.45 E-value=38 Score=24.31 Aligned_cols=44 Identities=18% Similarity=0.185 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005704 419 TQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILK 462 (682)
Q Consensus 419 t~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~ 462 (682)
+-||..+..++...-+++.+-..++.-+..++..|++||+.+..
T Consensus 6 aylrkkiarlkkdnlqlerdeqnlekiianlrdeiarlenevas 49 (52)
T 3he5_B 6 AYLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEVAS 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555555566666667777777778888888887653
No 85
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=62.31 E-value=70 Score=28.40 Aligned_cols=43 Identities=14% Similarity=0.306 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHhH
Q 005704 139 NRKMKIELEEYRTEATHLKNQQS-TIRRLEERNRQLEQQMEEKV 181 (682)
Q Consensus 139 ~~kL~~el~~l~~el~~lknq~~-~~~~Lkerl~~lE~~~e~~~ 181 (682)
+..|+.+++.|+.++..++.... -+..|+.++..|+..+++.-
T Consensus 17 Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 17 IERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777777777665544 67788989988888886654
No 86
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=62.01 E-value=54 Score=27.87 Aligned_cols=66 Identities=8% Similarity=0.043 Sum_probs=58.8
Q ss_pred hchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005704 400 MSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS 465 (682)
Q Consensus 400 ~~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~ 465 (682)
..+||..|.+-...+..++..++..+..++..+..+..++.....+++.+-...-.|+..|.+...
T Consensus 21 ~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYrk 86 (95)
T 3mov_A 21 SRACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRK 86 (95)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999999999999999999999999999999999999888888889988887763
No 87
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=61.49 E-value=85 Score=27.59 Aligned_cols=39 Identities=28% Similarity=0.421 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHH
Q 005704 517 RARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKI 555 (682)
Q Consensus 517 r~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEki 555 (682)
..++.+|+.++..+++++...-.+++.|+++|.-|--+|
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence 346889999999999999999999999999777664444
No 88
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=61.48 E-value=77 Score=27.11 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 250 QSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQ 282 (682)
Q Consensus 250 ~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~ 282 (682)
..++..+...+...+.++..++++.+.|+.++.
T Consensus 70 ~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 70 HLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666667777777777766665
No 89
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=60.91 E-value=97 Score=32.76 Aligned_cols=41 Identities=10% Similarity=0.145 Sum_probs=30.6
Q ss_pred hchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 400 MSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIA 440 (682)
Q Consensus 400 ~~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~ 440 (682)
+.-|-.+|...++.+.+.+..|+..+.++.........-+.
T Consensus 51 GCrLqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~ 91 (390)
T 1deq_A 51 GCRMKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTK 91 (390)
T ss_pred cchHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 34588889999999999999888888877766555444333
No 90
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=60.43 E-value=69 Score=26.60 Aligned_cols=59 Identities=20% Similarity=0.212 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcchHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 005704 212 DQLRQAKDSVATMQKLHELAQSQLFEVR--AQSDEERVAKQSEVNLLMDEVERAQTRLLSL 270 (682)
Q Consensus 212 ~ql~~ae~~l~eL~~~le~~Q~eL~~l~--~k~~ee~~a~~aEle~l~~DLEra~~R~~~L 270 (682)
+.++.+...|..|...+...+.+|.+-. ...........++++.+..+|+.+-.|=.+|
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666665432 2223334445556666666655555554444
No 91
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=60.36 E-value=1.5e+02 Score=29.98 Aligned_cols=18 Identities=17% Similarity=0.383 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 005704 270 LQREKDLLRSQLQSANDE 287 (682)
Q Consensus 270 LE~e~E~Lr~eL~~a~s~ 287 (682)
+..-.+.||..|.-....
T Consensus 174 l~~~~eeLr~~L~p~ae~ 191 (273)
T 3s84_A 174 ISASAEELRQRLAPLAED 191 (273)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455566677766654444
No 92
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=60.22 E-value=74 Score=26.51 Aligned_cols=17 Identities=18% Similarity=0.258 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005704 209 ALQDQLRQAKDSVATMQ 225 (682)
Q Consensus 209 ~L~~ql~~ae~~l~eL~ 225 (682)
.|..+-.+++.++.++.
T Consensus 67 ~L~~~K~eLE~~l~el~ 83 (89)
T 3bas_A 67 ELLSKNYHLENEVARLK 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334444444443
No 93
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=59.61 E-value=73 Score=26.22 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 194 EENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRA 240 (682)
Q Consensus 194 ~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~ 240 (682)
+.+.+...........++.+|.+++.++.+|...++..+.++.+++.
T Consensus 27 Q~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~ 73 (81)
T 1wt6_A 27 QSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34555556666677777788888888888888888877777776643
No 94
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=59.16 E-value=18 Score=32.90 Aligned_cols=40 Identities=15% Similarity=0.284 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005704 248 AKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDE 287 (682)
Q Consensus 248 a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~ 287 (682)
.+..|+.-+..+|...+.+-..+|.++..+..+|+..+.+
T Consensus 43 ~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTas 82 (135)
T 2e7s_A 43 DRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS 82 (135)
T ss_dssp THHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777777777777777655433
No 95
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=58.06 E-value=54 Score=33.95 Aligned_cols=39 Identities=10% Similarity=0.126 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005704 250 QSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDEA 288 (682)
Q Consensus 250 ~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~ 288 (682)
..+++....++..++..+..++..+..++.+|..+....
T Consensus 114 ~~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l 152 (369)
T 4dk0_A 114 LDTLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNL 152 (369)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777777777777777777777777777666543
No 96
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=57.60 E-value=20 Score=28.14 Aligned_cols=35 Identities=29% Similarity=0.353 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 512 QRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 512 QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
-|.|-+.++.+|+.++..+......|..++..|+.
T Consensus 24 sR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 24 SRARKLQRMKQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777888888888888888888888887775
No 97
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=57.57 E-value=1.2e+02 Score=28.00 Aligned_cols=29 Identities=21% Similarity=0.184 Sum_probs=1.1
Q ss_pred HHHHHhhhhhhhHHHHHHHhhhhccCCCCH
Q 005704 90 EVDNLTKRAKFGENAFLNIYQKLYEAPDPY 119 (682)
Q Consensus 90 EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~ 119 (682)
-++.|+.|.. .|+-|-.+|+-.+-+|+|-
T Consensus 30 l~~rL~~Rd~-~E~~~~~l~~e~~~~~~~~ 58 (152)
T 3a7p_A 30 LIRRLTDRND-KEAHLNELFQDNSGAIGGN 58 (152)
T ss_dssp ----------------------------CH
T ss_pred HHHHHHHhhh-HHHHHHHHHHhhccCCCcc
Confidence 5667777764 5888888888888888773
No 98
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=56.52 E-value=17 Score=27.60 Aligned_cols=34 Identities=21% Similarity=0.357 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005704 250 QSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQS 283 (682)
Q Consensus 250 ~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~ 283 (682)
.++++.|..+++..+.|+..|..+++.|+.+|.+
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678888888888888888888888888888753
No 99
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=56.45 E-value=16 Score=25.25 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHhhHH
Q 005704 525 EEVRQLKEKIGVLTAELEKTKADNVQLYG 553 (682)
Q Consensus 525 ~el~~~~~~i~~lr~Ei~~Lk~DN~kLyE 553 (682)
.+..++...|.....||.+||..|..|-|
T Consensus 7 ~ENekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 45667788889999999999999998866
No 100
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=55.98 E-value=85 Score=25.89 Aligned_cols=29 Identities=21% Similarity=0.212 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 429 TSLLETAEGKIAELTAKINEQQKLIQKLE 457 (682)
Q Consensus 429 ~~~l~~l~~~~~~l~~el~~~~~l~~kLE 457 (682)
+.+++.+-..+.-+.-++++++..|..|.
T Consensus 12 E~KIq~avdtI~lLqmEieELKekN~~L~ 40 (81)
T 2jee_A 12 EAKVQQAIDTITLLQMEIEELKEKNNSLS 40 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444433
No 101
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=54.05 E-value=20 Score=28.62 Aligned_cols=44 Identities=20% Similarity=0.238 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 503 SSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 503 ~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
..+..-+......-..++.+||..+.....+|..|+.+++++++
T Consensus 10 ~~~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 10 SELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555789999999999999999999998888887
No 102
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=52.80 E-value=72 Score=26.25 Aligned_cols=54 Identities=22% Similarity=0.241 Sum_probs=47.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 005704 413 KMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSS 466 (682)
Q Consensus 413 kL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~ 466 (682)
.|-.++..||....+++++--+.+..+..+..++..++.....-+..+..++..
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 577899999999999999999999999999999999998888888888877653
No 103
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=52.42 E-value=88 Score=26.96 Aligned_cols=31 Identities=19% Similarity=0.319 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHH
Q 005704 145 ELEEYRTEATHLKNQQS-TIRRLEERNRQLEQ 175 (682)
Q Consensus 145 el~~l~~el~~lknq~~-~~~~Lkerl~~lE~ 175 (682)
.+.+|+.|+.....|.+ ...+|++..+.+|.
T Consensus 36 ~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~ 67 (107)
T 2k48_A 36 TLQELQENITAHEQQLVTARQKLKDAEKAVEV 67 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34455555555555554 33344444334433
No 104
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=52.10 E-value=71 Score=27.31 Aligned_cols=56 Identities=20% Similarity=0.323 Sum_probs=46.2
Q ss_pred hHHhhcCCcHHHHHhhHHHHHHhHHHHHHHhhhhhhhHHHHHHHhhhhccCCCCHHH
Q 005704 65 TRDFKKASPEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPA 121 (682)
Q Consensus 65 Tk~Fkk~~~eekl~~~~~LLK~yQ~EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~Pl 121 (682)
+.+|.-|||+.+++.+..-|.-.+.+|..-++= +.+=.-..+||..=-...||..+
T Consensus 5 ~~d~s~LPpeqRkkkL~~Ki~el~~ei~ke~~~-regl~Km~~vY~~nP~~GD~~s~ 60 (98)
T 2ke4_A 5 TEDFSHLPPEQQRKRLQQQLEERSRELQKEVDQ-REALKKMKDVYEKTPQMGDPASL 60 (98)
T ss_dssp CSCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHCGGGCCGGGS
T ss_pred chhhccCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCccCCHHHH
Confidence 358999999999999999999999999987654 55555678899887777788776
No 105
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=51.89 E-value=1.2e+02 Score=26.47 Aligned_cols=37 Identities=8% Similarity=0.207 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Q 005704 207 EQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSD 243 (682)
Q Consensus 207 e~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ 243 (682)
...|+..+.+++..+.+|..+...+-.-|.++..+++
T Consensus 51 ~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n 87 (111)
T 2v66_B 51 KEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLN 87 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHH
Confidence 3334444444444444444444444444444444433
No 106
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=51.88 E-value=47 Score=27.20 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 508 VICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 508 Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
-+..-|+.-+.+..+++.....+..+...|+.+|..|+.
T Consensus 26 AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~ 64 (78)
T 1gu4_A 26 AVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSR 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888888888888888888888888888888888
No 107
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=51.02 E-value=96 Score=25.01 Aligned_cols=39 Identities=21% Similarity=0.187 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005704 510 CNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADN 548 (682)
Q Consensus 510 t~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN 548 (682)
...+++++..+.-+-+.|..--..+..++.-+.+|=.||
T Consensus 34 ~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL~~~~ 72 (72)
T 3cve_A 34 QSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKLLECS 72 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCC
Confidence 345666666666666666666666666666666665543
No 108
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=50.69 E-value=45 Score=26.94 Aligned_cols=42 Identities=29% Similarity=0.279 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 505 MLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 505 iL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
.|+--..+.-.-..++.+|+.++......|..|+.+++++++
T Consensus 27 ~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 27 ALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333333444445567888888888888888888888888776
No 109
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=50.52 E-value=22 Score=24.48 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHHhh
Q 005704 531 KEKIGVLTAELEKTKADNVQLYGKIRFVQ 559 (682)
Q Consensus 531 ~~~i~~lr~Ei~~Lk~DN~kLyEkiRylq 559 (682)
.+++.+.+.+|+-|+.-|..|=+.||.|+
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHHHhcC
Confidence 46677888888899999999988888763
No 110
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=50.45 E-value=58 Score=28.41 Aligned_cols=60 Identities=15% Similarity=0.278 Sum_probs=44.6
Q ss_pred cCChhHHHhhHhHHHHHHHHhhHhhHHHHHHHHHHhHHhhcCCcHHH---HHhhHHHHHHhHHHHHHHhh
Q 005704 30 DFDLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEK---LSLFNSLLKGYQEEVDNLTK 96 (682)
Q Consensus 30 ~~dl~~lq~~LD~~~~ei~~~q~~s~~sRK~La~~Tk~Fkk~~~eek---l~~~~~LLK~yQ~EID~LTk 96 (682)
..|+..||.++...=..+ ..+|.+|.+.++.|-+-||+-- +..=...+++||+-|+-|-+
T Consensus 21 ~~~ieeLq~Ei~~~E~QL-------~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKr 83 (113)
T 4fi5_A 21 SMTMEELQREINAHEGQL-------VIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKR 83 (113)
T ss_dssp CCCHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999998877655544 4789999999999999998743 33334567777777776644
No 111
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=49.85 E-value=56 Score=26.21 Aligned_cols=51 Identities=16% Similarity=0.248 Sum_probs=0.0
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 496 TYPDQDQSSMLKVICNQRDRFRARLRE--------------------------TEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 496 ~~~~~~~~siL~Ivt~QRDRfr~r~~E--------------------------LE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
++++.+.+++|.-|..|.+..-.+|.. ...++..++++++.|+.|+++++.
T Consensus 1 ~~~~~DL~~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk~ 77 (77)
T 3trt_A 1 GGSKPDCTAAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALKG 77 (77)
T ss_dssp --CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 112
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=49.68 E-value=1.8e+02 Score=31.28 Aligned_cols=56 Identities=18% Similarity=0.172 Sum_probs=44.3
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 405 SLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDI 460 (682)
Q Consensus 405 ~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL 460 (682)
.....+.+++-.++..+...+....+.+..|+..+......+..++..+..|+...
T Consensus 80 ~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~ 135 (411)
T 3ghg_C 80 DAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQC 135 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45778888888888888888888888888888888777777777777777776643
No 113
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=49.30 E-value=1.3e+02 Score=27.50 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005704 312 IISELNSELHNIETALS 328 (682)
Q Consensus 312 ei~~L~~e~~~Le~~L~ 328 (682)
.|.+|+.++..+-..+.
T Consensus 102 k~~eLEeeL~~~~~nlK 118 (147)
T 2b9c_A 102 KCAELEEELKTVTNNLK 118 (147)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35555555544444433
No 114
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=49.28 E-value=59 Score=33.31 Aligned_cols=38 Identities=13% Similarity=0.208 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005704 250 QSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSANDE 287 (682)
Q Consensus 250 ~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~ 287 (682)
..+++....+++.++..+..++..++.++.+|..+...
T Consensus 113 ~~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~ 150 (341)
T 3fpp_A 113 QQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTN 150 (341)
T ss_dssp THHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666677777777777777777777777766554
No 115
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=48.65 E-value=49 Score=27.70 Aligned_cols=39 Identities=23% Similarity=0.325 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005704 509 ICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKAD 547 (682)
Q Consensus 509 vt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~D 547 (682)
+..-|+.-+.+..+++.+...+..+...|+.+|..|+.+
T Consensus 27 arrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E 65 (87)
T 1hjb_A 27 VRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRE 65 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677888888888888888888888888888888873
No 116
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=48.64 E-value=1.2e+02 Score=25.59 Aligned_cols=88 Identities=16% Similarity=0.293 Sum_probs=56.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccccccccccccc
Q 005704 413 KMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSSKDRKGNVFDDWDLSEAGGTELSEKAD 492 (682)
Q Consensus 413 kL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (682)
.++.+|..+...-..+..++..+.++...+..++..++.....|...=..
T Consensus 8 ~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~------------------------------ 57 (96)
T 3q8t_A 8 QLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQ------------------------------ 57 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHH------------------------------
Confidence 34555556666666666666666666666666665555555554443222
Q ss_pred cCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 493 KKHTYPDQDQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 493 ~~~~~~~~~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
.-..+.-|+....++..++.....++.-.++.++.|++
T Consensus 58 ----------------~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~K 95 (96)
T 3q8t_A 58 ----------------YQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKLKK 95 (96)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 23345667778888888888888888888888887775
No 117
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=48.63 E-value=61 Score=27.86 Aligned_cols=60 Identities=15% Similarity=0.191 Sum_probs=40.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHhhhhhHhhHHHHHHhh
Q 005704 501 DQSSMLKVICNQRDRFRARLRETEEEVRQ---------------------LKEKIGVLTAELEKTKADNVQLYGKIRFVQ 559 (682)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~r~~ELE~el~~---------------------~~~~i~~lr~Ei~~Lk~DN~kLyEkiRylq 559 (682)
.....+..+..-++|+|.++..||-+|-+ ...-....+.++..|++.+-+|=++++-|+
T Consensus 16 ~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~~lE 95 (100)
T 1go4_E 16 TLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAME 95 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556677888888999999888888865 111223455666666666666666988887
Q ss_pred h
Q 005704 560 D 560 (682)
Q Consensus 560 s 560 (682)
.
T Consensus 96 e 96 (100)
T 1go4_E 96 R 96 (100)
T ss_dssp -
T ss_pred c
Confidence 5
No 118
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=48.44 E-value=78 Score=23.90 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005704 251 SEVNLLMDEVERAQTRLL 268 (682)
Q Consensus 251 aEle~l~~DLEra~~R~~ 268 (682)
.++.-...|..||++|+.
T Consensus 32 ~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 32 SDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 355567778888888875
No 119
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=48.31 E-value=3e+02 Score=29.86 Aligned_cols=48 Identities=25% Similarity=0.280 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 005704 419 TQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSS 466 (682)
Q Consensus 419 t~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~ 466 (682)
..||..+.-++..+..--..+..|+.-|..+...|++||.|+......
T Consensus 114 ~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~q~~~ 161 (491)
T 1m1j_A 114 TELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIKIRA 161 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555544444667777778888888888999998876643
No 120
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=47.97 E-value=39 Score=35.22 Aligned_cols=54 Identities=7% Similarity=-0.000 Sum_probs=41.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 408 LDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDIL 461 (682)
Q Consensus 408 l~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~ 461 (682)
..++.+|..++..+...+......+..|+..+..++..+.+++..|..|+..+.
T Consensus 4 ~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~ 57 (323)
T 1lwu_C 4 QKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCS 57 (323)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346677777888888888888888888888888888888888888888887654
No 121
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=47.61 E-value=2.9e+02 Score=29.61 Aligned_cols=18 Identities=11% Similarity=0.108 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005704 313 ISELNSELHNIETALSNE 330 (682)
Q Consensus 313 i~~L~~e~~~Le~~L~~~ 330 (682)
+..|.+++.+++--+...
T Consensus 444 ~~~~~~~~~~~~~~~~~~ 461 (487)
T 3oja_A 444 ETQLAEENARLKKLNGEA 461 (487)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhh
Confidence 444444444444443333
No 122
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=47.16 E-value=3e+02 Score=30.17 Aligned_cols=36 Identities=8% Similarity=0.235 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005704 251 SEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAND 286 (682)
Q Consensus 251 aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s 286 (682)
.+++-...|+-.=+.++..-+.+.......|+++..
T Consensus 73 ~dlakY~~~~AeY~~kl~aYe~~~~~~~k~lae~ek 108 (497)
T 3iox_A 73 ADLAKYQKDLADYPVKLKAYEDEQTSIKAALAELEK 108 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444455556666666666666666544
No 123
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=47.14 E-value=79 Score=25.09 Aligned_cols=44 Identities=25% Similarity=0.244 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005704 422 KVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS 465 (682)
Q Consensus 422 R~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~ 465 (682)
..+..+.+.++..|..=+-.+.+++..--.++.+||.++...+.
T Consensus 9 ~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~ 52 (74)
T 2q6q_A 9 NFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQI 52 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444444555555555666777777778888888888876664
No 124
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=47.07 E-value=79 Score=23.76 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=8.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHH
Q 005704 408 LDKNRKMEHELTQLKVKLSEKT 429 (682)
Q Consensus 408 l~kNrkL~~eLt~LR~~~~~l~ 429 (682)
..+|.+|..-|...|.++..+.
T Consensus 22 ~~rN~rL~~~L~~AR~el~~Lk 43 (51)
T 3m91_A 22 AARNSKLMETLKEARQQLLALR 43 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 125
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=46.92 E-value=90 Score=25.24 Aligned_cols=54 Identities=13% Similarity=0.078 Sum_probs=47.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 005704 413 KMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYSS 466 (682)
Q Consensus 413 kL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~~ 466 (682)
.|..+...++..+..++.++..+..++.....+++.+-...-.|+..+.+...-
T Consensus 2 ~l~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkL 55 (74)
T 2xv5_A 2 GSARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKL 55 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788889999999999999999999999999999988888999999888743
No 126
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=45.60 E-value=1.3e+02 Score=24.86 Aligned_cols=54 Identities=11% Similarity=0.129 Sum_probs=22.6
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005704 409 DKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILK 462 (682)
Q Consensus 409 ~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~ 462 (682)
+|-..+=..++.|+-.+.+++.+...+..+...+......+...|++|-.+...
T Consensus 13 ~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~ 66 (81)
T 2jee_A 13 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNG 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444444444444444444444444433
No 127
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=44.90 E-value=71 Score=26.15 Aligned_cols=56 Identities=11% Similarity=0.172 Sum_probs=37.4
Q ss_pred ChhHHHhhHhHHHHHHHHhhHhhHHHHHHHHHHhHHhhcCCcHHHH---HhhHHHHHHhHHHHHHH
Q 005704 32 DLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEKL---SLFNSLLKGYQEEVDNL 94 (682)
Q Consensus 32 dl~~lq~~LD~~~~ei~~~q~~s~~sRK~La~~Tk~Fkk~~~eekl---~~~~~LLK~yQ~EID~L 94 (682)
|+..||+++... ...=..+|++|.+.++.|-+-||+--. ..=...+++||+-|.-|
T Consensus 6 ~l~eLq~e~~~~-------E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~el 64 (78)
T 2ic6_A 6 TLKEVQDNITLH-------EQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGEL 64 (78)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666665544 444458899999999999998887432 23344566666666554
No 128
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=44.76 E-value=67 Score=26.58 Aligned_cols=55 Identities=24% Similarity=0.398 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHH---HHHHhhh
Q 005704 503 SSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYG---KIRFVQD 560 (682)
Q Consensus 503 ~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyE---kiRylqs 560 (682)
..--..|..+| |.-..+--++..++...|..++.|+..|+..|..|-+ .++||.+
T Consensus 19 e~YWk~lAE~R---r~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~la~ 76 (83)
T 1wlq_A 19 SQYWKEVAEQR---RKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAE 76 (83)
T ss_dssp CTHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566554 5556666677788888899999999999999988754 4566654
No 129
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=44.56 E-value=1.5e+02 Score=25.56 Aligned_cols=71 Identities=15% Similarity=0.212 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 255 LLMDEVERAQTRLLSLQREKDLLRSQLQSANDEAGSRNSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNEREQH 334 (682)
Q Consensus 255 ~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s~~~~~~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~~ 334 (682)
|-|.|++..+..+..-|..+-.-+..|..+....+... ++.+..- +.+-.+++..++.++.+++...
T Consensus 32 ~tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DP---DevNK~t----------l~~R~~~Vsalq~KiaeLKrqL 98 (107)
T 2k48_A 32 FTMSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDP---DDVNKST----------LQNRRAAVSTLETKLGELKRQL 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---cHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555443221 1122111 3445556666666666665555
Q ss_pred HHHH
Q 005704 335 MNEI 338 (682)
Q Consensus 335 ~~~~ 338 (682)
+..+
T Consensus 99 Ad~v 102 (107)
T 2k48_A 99 ADLV 102 (107)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 130
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=44.56 E-value=1.1e+02 Score=24.68 Aligned_cols=37 Identities=27% Similarity=0.375 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005704 429 TSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS 465 (682)
Q Consensus 429 ~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~ 465 (682)
..++...+..+..++.++.+...+|..|-+.|..+++
T Consensus 32 ~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 32 IEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3334444444555555555555566666666655554
No 131
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=44.25 E-value=1.9e+02 Score=26.41 Aligned_cols=19 Identities=32% Similarity=0.361 Sum_probs=9.9
Q ss_pred HhhHHHHHHHHHHHHHHHH
Q 005704 137 SENRKMKIELEEYRTEATH 155 (682)
Q Consensus 137 ~E~~kL~~el~~l~~el~~ 155 (682)
.++..|+.++..|..++..
T Consensus 29 ~eN~~Lk~e~e~l~~~~~~ 47 (155)
T 2oto_A 29 HENKDLKARLENAMEVAGR 47 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3555555555555544443
No 132
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=44.06 E-value=42 Score=37.82 Aligned_cols=21 Identities=29% Similarity=0.585 Sum_probs=14.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHH
Q 005704 407 LLDKNRKMEHELTQLKVKLSE 427 (682)
Q Consensus 407 Ll~kNrkL~~eLt~LR~~~~~ 427 (682)
.++||++++.+|..|+..+..
T Consensus 509 ~~ekn~~lq~qL~~L~~el~~ 529 (575)
T 2i1j_A 509 LAERNERLHNQLKALKQDLAR 529 (575)
T ss_dssp HHHHCHHHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHHHH
Confidence 577888888777766655443
No 133
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=43.72 E-value=30 Score=23.56 Aligned_cols=28 Identities=11% Similarity=0.195 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 519 RLRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 519 r~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
|..+||+.+..+-...+.|.+|+..|+.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 5677888888888888999999998887
No 134
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=43.69 E-value=1.6e+02 Score=25.45 Aligned_cols=37 Identities=14% Similarity=0.227 Sum_probs=24.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 407 LLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELT 443 (682)
Q Consensus 407 Ll~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~ 443 (682)
|+.+|-....+|+..+....++......|..++..+.
T Consensus 6 LLRK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 6 LLRKNAEVTKQVSMARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666777777777666666666666666665544
No 135
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=43.40 E-value=62 Score=26.42 Aligned_cols=54 Identities=11% Similarity=0.185 Sum_probs=27.6
Q ss_pred hhhhhhHHHHHHHhhhhccCCCC----HHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHH
Q 005704 96 KRAKFGENAFLNIYQKLYEAPDP----YPALASIAEQDLKLSELESENRKMKIELEEYRTE 152 (682)
Q Consensus 96 kRsK~aE~aFl~~Y~~L~eaPDP----~PlLe~s~~~~~~~~~le~E~~kL~~el~~l~~e 152 (682)
+|-...-.+|..+-..+-..|++ ..+|..|++.... |..++..|..+++.|+.+
T Consensus 12 ~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~---L~~~~~~l~~e~~~L~~~ 69 (83)
T 1nkp_B 12 KRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQY---MRRKNHTHQQDIDDLKRQ 69 (83)
T ss_dssp HHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 34445566777776665444443 4467776665443 333444444444443333
No 136
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=43.18 E-value=30 Score=23.89 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 519 RLRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 519 r~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
|..+||..+..+-...+.|.+|+..|+.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5667888888888888888888888887
No 137
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=42.91 E-value=49 Score=25.14 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 515 RFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 515 Rfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
|-+..+.+||.++..+..+...|+.++..|+.
T Consensus 19 RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 19 KKKEYVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445777777777777777777776666655
No 138
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=42.67 E-value=91 Score=22.37 Aligned_cols=29 Identities=21% Similarity=0.406 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 518 ARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 518 ~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
.|..+|+.....+..+++.|++|-..|+.
T Consensus 10 ~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 10 NRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33333444444444444444444444443
No 139
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=42.54 E-value=1.4e+02 Score=24.33 Aligned_cols=64 Identities=13% Similarity=0.118 Sum_probs=42.2
Q ss_pred hchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005704 400 MSKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY 464 (682)
Q Consensus 400 ~~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~ 464 (682)
+..+|. |+.-|..|-.--..|.+-.++|-.+++.+..+...+..++.....-..+++..+..+.
T Consensus 8 gkevEn-Li~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elE 71 (77)
T 2w83_C 8 GREVEN-LILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELE 71 (77)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777 4444555555555677777788888888888888888777777777777776655444
No 140
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=42.36 E-value=1.4e+02 Score=24.49 Aligned_cols=24 Identities=13% Similarity=0.234 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 204 QEREQALQDQLRQAKDSVATMQKL 227 (682)
Q Consensus 204 ~ere~~L~~ql~~ae~~l~eL~~~ 227 (682)
++....|+.+|+.-...++-|+..
T Consensus 53 K~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 53 KAEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 445556666666666655555543
No 141
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=41.50 E-value=1e+02 Score=22.63 Aligned_cols=32 Identities=16% Similarity=0.206 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 312 IISELNSELHNIETALSNEREQHMNEIKKLNA 343 (682)
Q Consensus 312 ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L~~ 343 (682)
.+.+|++-+..|+.+++.+-..+.+.-.+|.+
T Consensus 6 kv~~Le~~ld~LqTr~ArLlae~~ssq~KlKq 37 (46)
T 3swy_A 6 KVEQLGSSLDTLQTRFARLLAEYNATQMKMKQ 37 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666665555555555444444443
No 142
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=40.93 E-value=85 Score=29.98 Aligned_cols=41 Identities=22% Similarity=0.283 Sum_probs=24.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 413 KMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLI 453 (682)
Q Consensus 413 kL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~ 453 (682)
+|++|++.|+.+++....++..|+.++..+++.....+..+
T Consensus 24 ~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~ 64 (190)
T 4emc_A 24 NLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQT 64 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 35666666666666666666666666666666654444333
No 143
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=40.49 E-value=31 Score=23.46 Aligned_cols=27 Identities=26% Similarity=0.278 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 520 LRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 520 ~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
..+||+.+..+-...+.|.+|+..|+.
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 446777777777778888888888876
No 144
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=40.42 E-value=55 Score=23.83 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=10.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 005704 413 KMEHELTQLKVKLSEKTSLLETAEG 437 (682)
Q Consensus 413 kL~~eLt~LR~~~~~l~~~l~~l~~ 437 (682)
+|++=++.|...+..++..+..+++
T Consensus 21 klenivarlendnanlekdianlek 45 (56)
T 3he4_A 21 KLENIVARLENDNANLEKDIANLEK 45 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcccchHHHHHHHHHH
Confidence 3444444444444444333333333
No 145
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=40.27 E-value=81 Score=22.95 Aligned_cols=29 Identities=31% Similarity=0.381 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 432 LETAEGKIAELTAKINEQQKLIQKLEDDI 460 (682)
Q Consensus 432 l~~l~~~~~~l~~el~~~~~l~~kLE~DL 460 (682)
...++.+-..++..+..+++-|+.||.|+
T Consensus 26 varlendnanlekdianlekdianlerdv 54 (56)
T 3he4_A 26 VARLENDNANLEKDIANLEKDIANLERDV 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHHHhh
Confidence 33333444444444444445555555554
No 146
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=40.11 E-value=1.1e+02 Score=26.08 Aligned_cols=58 Identities=12% Similarity=0.203 Sum_probs=40.4
Q ss_pred ChhHHHhhHhHHHHHHHHhhHhhHHHHHHHHHHhHHhhcCCcHHH---HHhhHHHHHHhHHHHHHHhh
Q 005704 32 DLEKEKSLLDELGLKIAENQENSQKNRRKLAESTRDFKKASPEEK---LSLFNSLLKGYQEEVDNLTK 96 (682)
Q Consensus 32 dl~~lq~~LD~~~~ei~~~q~~s~~sRK~La~~Tk~Fkk~~~eek---l~~~~~LLK~yQ~EID~LTk 96 (682)
|+..||.++...= ..=..+|.+|.+.++.|-+-||+-- +..=...+++||+-|.-|-+
T Consensus 6 ~i~eLq~e~~~~E-------~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr 66 (96)
T 2ic9_A 6 TLKEVQDNITLHE-------QRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKR 66 (96)
T ss_dssp THHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777665444 4445789999999999999998743 23334567777777776643
No 147
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=39.26 E-value=30 Score=23.94 Aligned_cols=28 Identities=18% Similarity=0.379 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 519 RLRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 519 r~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
|..+||..+..+-...+.|.+|+..|+.
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4567788888888888888888888877
No 148
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=39.15 E-value=1.2e+02 Score=29.96 Aligned_cols=37 Identities=11% Similarity=0.200 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 249 KQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAN 285 (682)
Q Consensus 249 ~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~ 285 (682)
...+++....+++.++.++..++.+++.++..|....
T Consensus 96 s~~~~~~a~~~~~~a~a~l~~a~a~l~~a~~~l~~~~ 132 (277)
T 2f1m_A 96 SKQEYDQALADAQQANAAVTAAKAAVETARINLAYTK 132 (277)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCE
Confidence 3567777777788888888778887777777776543
No 149
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=38.41 E-value=1.5e+02 Score=25.28 Aligned_cols=58 Identities=19% Similarity=0.331 Sum_probs=31.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005704 306 LSAKEKIISELNSELHNIETALSNE-R-EQHMNEIKKLNALLIEKEAALEDMKKELQARP 363 (682)
Q Consensus 306 l~~ke~ei~~L~~e~~~Le~~L~~~-r-~~~~~~~~~L~~ql~~~~~~~~~le~~l~~~~ 363 (682)
+..++.+...+..++...-..+... . +.....+...+..+++....+..|+-++..+|
T Consensus 17 Fe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p 76 (102)
T 2qyw_A 17 FEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYAP 76 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4455555555555555544444211 1 22233455566666666666777777777665
No 150
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=38.07 E-value=1.4e+02 Score=24.72 Aligned_cols=42 Identities=26% Similarity=0.342 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 419 TQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDI 460 (682)
Q Consensus 419 t~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL 460 (682)
..+-.+++.+..++..|...+..+.-+++.+.+--..+=.||
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dL 64 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQI 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444333333344
No 151
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=37.81 E-value=42 Score=22.90 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 519 RLRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 519 r~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
|..+||+.+..+-...+.|..|+..|+.
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 5567888888888888888888888876
No 152
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=37.76 E-value=1.4e+02 Score=25.40 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 195 ENQKTLEILQEREQALQDQLRQAKDSVATMQKLH 228 (682)
Q Consensus 195 ~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~l 228 (682)
.+++++..+......|..++...+.++.+++..+
T Consensus 74 ~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l 107 (117)
T 2zqm_A 74 ELKEKIETLEVRLNALERQEKKLNEKLKELTAQI 107 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444333
No 153
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=37.51 E-value=1.3e+02 Score=22.48 Aligned_cols=46 Identities=13% Similarity=0.204 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHhhh
Q 005704 508 VICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQD 560 (682)
Q Consensus 508 Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRylqs 560 (682)
.+-.|-+-+|..|.-|..||......++.|..|...+|. -++-+|+
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKe-------vlk~lq~ 52 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKE-------VLKQLQG 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHH-------HHHHHcc
Confidence 456788889999999999999999999998888888777 7776664
No 154
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=37.21 E-value=1e+02 Score=25.49 Aligned_cols=26 Identities=15% Similarity=0.445 Sum_probs=15.7
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHH
Q 005704 303 ENSLSAKEKIISELNSELHNIETALS 328 (682)
Q Consensus 303 e~el~~ke~ei~~L~~e~~~Le~~L~ 328 (682)
..++..++..|..|+.++..|++.+.
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555556666666666666666654
No 155
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=37.17 E-value=1.8e+02 Score=24.22 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=16.9
Q ss_pred HHHhHHHHHHHhhhhhhhHHHH
Q 005704 84 LKGYQEEVDNLTKRAKFGENAF 105 (682)
Q Consensus 84 LK~yQ~EID~LTkRsK~aE~aF 105 (682)
|..||.-+|.|..=-..+|..+
T Consensus 4 L~~f~~~l~el~~WL~e~e~~l 25 (118)
T 3uul_A 4 LDSYQIALEEVLTWLLSAEDTF 25 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999987777666543
No 156
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=37.09 E-value=3.5e+02 Score=30.42 Aligned_cols=95 Identities=19% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHH
Q 005704 124 SIAEQDLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLAEENQKTLEIL 203 (682)
Q Consensus 124 ~s~~~~~~~~~le~E~~kL~~el~~l~~el~~lknq~~~~~~Lkerl~~lE~~~e~~~~~~~~~~E~el~~~~eek~~~~ 203 (682)
.......+....+.+...|.+...+++.-+.. -.+..++.+++|.++|+.-....+.+.+.-+...+.+..+.+
T Consensus 488 ~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~------~~~~~~e~~~ql~~kme~~~~~~~~e~~~~~~~~~~~~~~~~ 561 (592)
T 1f5n_A 488 EIEVERVKAESAQASAKMLHEMQRKNEQMMEQ------KERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLL 561 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 204 QEREQALQDQLRQAKDSVATMQKL 227 (682)
Q Consensus 204 ~ere~~L~~ql~~ae~~l~eL~~~ 227 (682)
.+- ++.+...++.+|.+|+..
T Consensus 562 ~~g---~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 562 KEG---FQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHT---CHHHHHHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHHHHHHHHh
No 157
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=36.89 E-value=46 Score=22.75 Aligned_cols=28 Identities=21% Similarity=0.399 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 519 RLRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 519 r~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
|..+||+.+..+-...+.|.+|+..|+.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 5677888888888889999999998886
No 158
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=36.68 E-value=46 Score=22.58 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 520 LRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 520 ~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
..+||+.+..+-...+.|.+|+..|+.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 456888888888888888888888876
No 159
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=36.60 E-value=4.2e+02 Score=28.30 Aligned_cols=27 Identities=7% Similarity=0.254 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 203 LQEREQALQDQLRQAKDSVATMQKLHE 229 (682)
Q Consensus 203 ~~ere~~L~~ql~~ae~~l~eL~~~le 229 (682)
+.++...|+..+...+..|..|+..+.
T Consensus 89 ml~~~~~~e~~~~~~~~~i~~l~~~~~ 115 (409)
T 1m1j_C 89 IIEEIIRYENTILAHENTIQQLTDMHI 115 (409)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 333333343444444444444443333
No 160
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=36.47 E-value=2.2e+02 Score=24.98 Aligned_cols=41 Identities=24% Similarity=0.327 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 418 LTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLED 458 (682)
Q Consensus 418 Lt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~ 458 (682)
+..+...++.++..++.++..+..+...+.+....+..|+.
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~ 43 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSD 43 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555556666666666666666666666666666666553
No 161
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=36.41 E-value=46 Score=22.55 Aligned_cols=27 Identities=19% Similarity=0.318 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 520 LRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 520 ~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
..+||..+..+-...+.|.+|+..|+.
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 457888888888888899999988886
No 162
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=35.78 E-value=1.8e+02 Score=23.81 Aligned_cols=20 Identities=25% Similarity=0.380 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005704 263 AQTRLLSLQREKDLLRSQLQ 282 (682)
Q Consensus 263 a~~R~~~LE~e~E~Lr~eL~ 282 (682)
+.+|+.++|.+|..|..++.
T Consensus 11 ~~~klq~~E~rN~~Le~~v~ 30 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLR 30 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHH
Confidence 34455555555555554443
No 163
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=35.68 E-value=99 Score=22.17 Aligned_cols=35 Identities=20% Similarity=0.233 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 506 LKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAE 540 (682)
Q Consensus 506 L~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~E 540 (682)
+.-+......+..+|.|||+.++-+.++...||+=
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33445556666677777777777777776666653
No 164
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=34.33 E-value=1.9e+02 Score=23.62 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005704 208 QALQDQLRQAKDSVATMQ 225 (682)
Q Consensus 208 ~~L~~ql~~ae~~l~eL~ 225 (682)
..|+.+|.++++.+.++-
T Consensus 55 ~~lq~Ki~elkrqlAd~v 72 (78)
T 2ic6_A 55 SALETKLGELKRELADLI 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555555443
No 165
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=34.21 E-value=4.9e+02 Score=28.31 Aligned_cols=31 Identities=10% Similarity=0.165 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 250 QSEVNLLMDEVERAQTRLLSLQREKDLLRSQ 280 (682)
Q Consensus 250 ~aEle~l~~DLEra~~R~~~LE~e~E~Lr~e 280 (682)
...|..|...++..+.++..|+..+..+...
T Consensus 167 ~~~i~~L~~~~~~l~~ki~~l~~~~~~~~~~ 197 (464)
T 1m1j_B 167 PSSLRVLRAVIDSLHKKIQKLENAIATQTDY 197 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666777777888888777665543
No 166
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=34.01 E-value=1.5e+02 Score=25.49 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=9.0
Q ss_pred hhHhhhhhhHHHHHHHHHHHHHHH
Q 005704 301 YLENSLSAKEKIISELNSELHNIE 324 (682)
Q Consensus 301 ~le~el~~ke~ei~~L~~e~~~Le 324 (682)
.|.++..++-.+|.-|...+..++
T Consensus 20 QLDNEKsal~YqVdlLKD~LEe~e 43 (103)
T 4h22_A 20 QLDNEKTNFMYQVDTLKDMLLELE 43 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 167
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=33.06 E-value=2.9e+02 Score=25.38 Aligned_cols=68 Identities=15% Similarity=0.187 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005704 208 QALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQSDEERVAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAND 286 (682)
Q Consensus 208 ~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k~~ee~~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~s 286 (682)
..|+..+..++.++.++...+...... .....+|+..+...+..+..++..|+.||..|=.++-....
T Consensus 71 ~~L~~El~~l~~ki~dLeeel~eK~K~-----------~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~ 138 (152)
T 3a7p_A 71 AILQKELKSKEQEIRRLKEVIALKNKN-----------TERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTE 138 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555544444332221 22346777777788888888999999999999888765443
No 168
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=32.98 E-value=1.3e+02 Score=21.31 Aligned_cols=17 Identities=18% Similarity=0.261 Sum_probs=8.1
Q ss_pred hhHHHHHHHHHHHHHHH
Q 005704 414 MEHELTQLKVKLSEKTS 430 (682)
Q Consensus 414 L~~eLt~LR~~~~~l~~ 430 (682)
|+++++.+...+..+..
T Consensus 8 lenevaslenenetlkk 24 (49)
T 3he5_A 8 LENEVASLENENETLKK 24 (49)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccHHHHH
Confidence 44555555544444443
No 169
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=32.93 E-value=82 Score=35.39 Aligned_cols=14 Identities=29% Similarity=0.285 Sum_probs=9.3
Q ss_pred hhhHHHHHHHhhhh
Q 005704 99 KFGENAFLNIYQKL 112 (682)
Q Consensus 99 K~aE~aFl~~Y~~L 112 (682)
..|+..||.+.+.|
T Consensus 185 ~eA~~~yL~~a~~l 198 (575)
T 2i1j_A 185 EDAMMEYLKIAQDL 198 (575)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhc
Confidence 35677777777664
No 170
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=32.76 E-value=5.2e+02 Score=28.23 Aligned_cols=36 Identities=14% Similarity=0.043 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 194 EENQKTLEILQEREQALQDQLRQAKDSVATMQKLHE 229 (682)
Q Consensus 194 ~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le 229 (682)
+.++.+......+........+..++...+.++.++
T Consensus 30 a~Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye 65 (497)
T 3iox_A 30 AAYEAAVAANNAANAALTAENTAIKKRNADAKADYE 65 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444333333333333333333444444444433
No 171
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=31.73 E-value=77 Score=25.93 Aligned_cols=31 Identities=23% Similarity=0.334 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 516 FRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 516 fr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
...++.+|+.+...+..+|..|+.|+..|+.
T Consensus 41 ~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 41 TQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777777777776
No 172
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=31.71 E-value=63 Score=22.10 Aligned_cols=28 Identities=21% Similarity=0.399 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 519 RLRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 519 r~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
|..+||+....+-...+.|.+|+..|+.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4567888888888888888888888876
No 173
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=31.63 E-value=63 Score=22.05 Aligned_cols=28 Identities=11% Similarity=0.205 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 519 RLRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 519 r~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
|..+||..+..+-...+.|.+|+..|+.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5677888888888888888888888876
No 174
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=31.45 E-value=2e+02 Score=23.32 Aligned_cols=30 Identities=13% Similarity=0.183 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 312 IISELNSELHNIETALSNEREQHMNEIKKL 341 (682)
Q Consensus 312 ei~~L~~e~~~Le~~L~~~r~~~~~~~~~L 341 (682)
.+.+|+.-+..|+.+++.+-..+.+...+|
T Consensus 8 Kv~~LE~sld~LQTrfARLLaEy~ssQ~KL 37 (74)
T 3swf_A 8 KVTRMESSVDLLQTRFARILAEYESMQQKL 37 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555444444443333
No 175
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=31.17 E-value=1.4e+02 Score=25.36 Aligned_cols=66 Identities=18% Similarity=0.212 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccC--------CCCCcCchhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005704 265 TRLLSLQREKDLLRSQLQSANDEAGSR--------NSDTLDSNSYLENSLSAKEKIISELNSELHNIETALSNE 330 (682)
Q Consensus 265 ~R~~~LE~e~E~Lr~eL~~a~s~~~~~--------~~~~~~~~s~le~el~~ke~ei~~L~~e~~~Le~~L~~~ 330 (682)
+|..-|++.+..|..+|+....+-.+. .+..+....+.+.+|......|..|..+...++..|..+
T Consensus 15 qRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 15 QQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555444432210 011122233556666666667777777777777666654
No 176
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=30.73 E-value=1e+02 Score=20.18 Aligned_cols=27 Identities=26% Similarity=0.414 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 520 LRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 520 ~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
+.-|.+++..++.+|..|+-|+..|+.
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445666666666666677777766664
No 177
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=30.71 E-value=1.9e+02 Score=23.09 Aligned_cols=40 Identities=18% Similarity=0.261 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q 005704 337 EIKKLNALLIEKEAALEDMKKELQARPTSKMVDDLRKKVKIL 378 (682)
Q Consensus 337 ~~~~L~~ql~~~~~~~~~le~~l~~~~~~sDyeelK~EL~~L 378 (682)
.+.+|+.++..+......+..+...+ ..++..|..||..|
T Consensus 30 ~i~~LE~~v~~le~~~~~l~~en~~L--r~~i~~L~~El~~l 69 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSSTTLENDQL--RQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHc
Confidence 34444444444444444433333333 23444445444443
No 178
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=30.65 E-value=1.1e+02 Score=23.69 Aligned_cols=33 Identities=21% Similarity=0.228 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005704 512 QRDRFRARLRETEEEVRQLKEKIGVLTAELEKT 544 (682)
Q Consensus 512 QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~L 544 (682)
....+-+=|..|-+|++..+..+..|+.|-..|
T Consensus 28 kiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 28 KVQQLMKVNSSLSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhh
Confidence 333444455555555555555555555444443
No 179
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=30.35 E-value=83 Score=26.30 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 515 RFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 515 Rfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
-...+..+|+.+...+..+|..|+.|+..|+.
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888999999999999999999999988
No 180
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=30.31 E-value=1.6e+02 Score=22.87 Aligned_cols=10 Identities=20% Similarity=0.219 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 005704 439 IAELTAKINE 448 (682)
Q Consensus 439 ~~~l~~el~~ 448 (682)
+..+..++.-
T Consensus 46 i~~L~~E~~~ 55 (63)
T 1ci6_A 46 ADSLAKEIQY 55 (63)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 181
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=30.28 E-value=1e+02 Score=22.30 Aligned_cols=29 Identities=14% Similarity=0.207 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 201 EILQEREQALQDQLRQAKDSVATMQKLHE 229 (682)
Q Consensus 201 ~~~~ere~~L~~ql~~ae~~l~eL~~~le 229 (682)
.+|..+...|++++..++.++..|...+.
T Consensus 12 sel~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 12 SDLNERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777776554
No 182
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=30.20 E-value=82 Score=19.90 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005704 515 RFRARLRETEEEVRQLKEKIGVL 537 (682)
Q Consensus 515 Rfr~r~~ELE~el~~~~~~i~~l 537 (682)
|++++|.-|.+++..+..+|..|
T Consensus 4 rlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHh
Confidence 67777777766666665555443
No 183
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=30.04 E-value=82 Score=23.75 Aligned_cols=28 Identities=4% Similarity=0.183 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 519 RLRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 519 r~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
++.+|..++..+..+++.|..++..|+.
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~ 32 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARS 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666666655
No 184
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=29.80 E-value=1.6e+02 Score=30.30 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=29.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 247 VAKQSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAN 285 (682)
Q Consensus 247 ~a~~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~ 285 (682)
....+++.....+++.++.++..++.+++.++..|....
T Consensus 118 ~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~ 156 (369)
T 4dk0_A 118 NTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTK 156 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCE
Confidence 334566677777888888888888888888888876554
No 185
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=29.61 E-value=1.8e+02 Score=23.87 Aligned_cols=40 Identities=20% Similarity=0.338 Sum_probs=22.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 412 RKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQK 451 (682)
Q Consensus 412 rkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~ 451 (682)
--++.+|+..|..+...+.++...+.....+..++..++.
T Consensus 27 Q~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~ 66 (81)
T 1wt6_A 27 QSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQE 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466667777766666666666555555555444443333
No 186
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=29.49 E-value=1.8e+02 Score=23.64 Aligned_cols=42 Identities=17% Similarity=0.141 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005704 424 KLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS 465 (682)
Q Consensus 424 ~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~ 465 (682)
.+.+|+.++.-.+.-+..|+..+.++...|.+|...+..+..
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~ 56 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLE 56 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555666666666666666666666665554
No 187
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=29.21 E-value=1.9e+02 Score=23.27 Aligned_cols=47 Identities=19% Similarity=0.206 Sum_probs=24.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 412 RKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDI 460 (682)
Q Consensus 412 rkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL 460 (682)
+.|...+..+....+++..++...+.++..+. -+++..+.+.|+.-|
T Consensus 2 ~~L~k~i~~l~~E~eel~~klk~~~ee~~~~~--eee~~~~~~~lek~L 48 (71)
T 1s1c_X 2 SMLTKDIEILRRENEELTEKMKKAEEEYKLEK--EEEISNLKAAFEKNI 48 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHTHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 34555566666666666666666666655554 222224444555444
No 188
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=29.18 E-value=2.7e+02 Score=24.24 Aligned_cols=19 Identities=16% Similarity=0.223 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005704 208 QALQDQLRQAKDSVATMQK 226 (682)
Q Consensus 208 ~~L~~ql~~ae~~l~eL~~ 226 (682)
..|+.+|.++++++.+.-+
T Consensus 72 s~lq~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 72 VSIQAKIDELKRQLADRIA 90 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555444
No 189
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=28.77 E-value=5.6e+02 Score=27.35 Aligned_cols=34 Identities=9% Similarity=0.085 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 196 NQKTLEILQEREQALQDQLRQAKDSVATMQKLHE 229 (682)
Q Consensus 196 ~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le 229 (682)
+-++-.++-++...++..+.....+|.+|+..++
T Consensus 82 ~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~~ 115 (411)
T 3ghg_C 82 ATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYN 115 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3333334444444555555555666666655444
No 190
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=28.59 E-value=2.8e+02 Score=25.14 Aligned_cols=29 Identities=14% Similarity=0.210 Sum_probs=20.1
Q ss_pred HHHHHHHhhhhhhhHHHHHHHhhhhccCCCCHHHHH
Q 005704 88 QEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALA 123 (682)
Q Consensus 88 Q~EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~PlLe 123 (682)
+++||..++| |-.+...|..+|-+.|=..
T Consensus 65 haev~~v~~~-------F~~Ld~~L~~l~~~s~e~~ 93 (140)
T 1xaw_A 65 QSVLDEINKE-------LSRLDKELDDYREESEEYM 93 (140)
T ss_dssp HHHHHHHHHH-------HHHHHHHHHHSCTTSHHHH
T ss_pred HHHHHHHHHH-------HHHHHHHHHhCCCCCHHHH
Confidence 5677766664 7777888888887666443
No 191
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=28.55 E-value=1.8e+02 Score=23.98 Aligned_cols=56 Identities=27% Similarity=0.318 Sum_probs=40.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHhh
Q 005704 501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQ 559 (682)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRylq 559 (682)
....--..|..+| |.-..+--++...+...|..|+.|+..|+..|..|=+.+.-+|
T Consensus 25 Pse~YWk~lAE~R---R~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~q 80 (83)
T 1uii_A 25 PSSQYWKEVAEKR---RKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQ 80 (83)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666655 5566666777888888888999999999998888866654443
No 192
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=28.19 E-value=1.5e+02 Score=24.06 Aligned_cols=49 Identities=14% Similarity=0.108 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHhh
Q 005704 511 NQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFVQ 559 (682)
Q Consensus 511 ~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRylq 559 (682)
...+.+..|++=.|.-+..++..+...+.+|+.|+..---|++|++-++
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555555555556666666666667777777775555555555443
No 193
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=28.01 E-value=1.9e+02 Score=21.57 Aligned_cols=42 Identities=17% Similarity=0.313 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 415 EHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKL 456 (682)
Q Consensus 415 ~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kL 456 (682)
-.++..|+..+.-+..+++.....++.++.+-...+.....|
T Consensus 9 ~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~l 50 (54)
T 1deb_A 9 LKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQL 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHH
Confidence 344555556666666666666666666666666666665554
No 194
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=27.98 E-value=3.3e+02 Score=24.35 Aligned_cols=33 Identities=24% Similarity=0.412 Sum_probs=19.1
Q ss_pred hhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 301 YLENSLSAKEKIISELNSELHNIETALSNEREQ 333 (682)
Q Consensus 301 ~le~el~~ke~ei~~L~~e~~~Le~~L~~~r~~ 333 (682)
.+|+.|..++..+.-|..-+-.|...|..++-+
T Consensus 102 ELEADLKEKDsMVe~LT~TiG~LrKELEdEklK 134 (167)
T 4gkw_A 102 ELEADLKEKDSMVESLTETIGILRKELENEKLK 134 (167)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777666666655555554444444433
No 195
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=27.61 E-value=1.7e+02 Score=20.95 Aligned_cols=41 Identities=17% Similarity=0.164 Sum_probs=17.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 413 KMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLI 453 (682)
Q Consensus 413 kL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~ 453 (682)
-|...++.|+..+-.++..-+.+++-+..+..++..++..+
T Consensus 7 ylrkkiarlkkdnlqlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 7 YLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444433
No 196
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=26.76 E-value=1.8e+02 Score=23.78 Aligned_cols=50 Identities=26% Similarity=0.325 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHH
Q 005704 503 SSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKI 555 (682)
Q Consensus 503 ~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEki 555 (682)
..--..|..+| |.-..+--++..++...|..++.+|..|+..|..|-|..
T Consensus 15 e~YWk~lAE~R---R~AL~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~ 64 (79)
T 2zxx_A 15 SQYWKEVAEQR---RKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVA 64 (79)
T ss_dssp CTHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555554 566667777888999999999999999999998885544
No 197
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=26.76 E-value=1.1e+02 Score=23.57 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHh
Q 005704 533 KIGVLTAELEKTKADNVQLYGKIRFV 558 (682)
Q Consensus 533 ~i~~lr~Ei~~Lk~DN~kLyEkiRyl 558 (682)
.+..|..++..|..+|..|=..|..|
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L 48 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANML 48 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555544
No 198
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=26.74 E-value=69 Score=32.06 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 504 SMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 504 siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
.-+.-+..|.+.+..+|.-|.+.++..++++..|+.|++.|++
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455566777777777777777777777777777777777666
No 199
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=26.73 E-value=2.9e+02 Score=23.39 Aligned_cols=19 Identities=26% Similarity=0.371 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005704 208 QALQDQLRQAKDSVATMQK 226 (682)
Q Consensus 208 ~~L~~ql~~ae~~l~eL~~ 226 (682)
..|+.+|.++++.+.++-+
T Consensus 55 ~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 55 SALETKLGELKRELADLIA 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555443
No 200
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=26.72 E-value=90 Score=20.56 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 522 ETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 522 ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
-||++++.++.-++.|+..++.|..
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4889999999999999888887764
No 201
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=26.16 E-value=1.4e+02 Score=30.35 Aligned_cols=36 Identities=11% Similarity=0.181 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 250 QSEVNLLMDEVERAQTRLLSLQREKDLLRSQLQSAN 285 (682)
Q Consensus 250 ~aEle~l~~DLEra~~R~~~LE~e~E~Lr~eL~~a~ 285 (682)
..++.....+++.++..+..++..++.++..|....
T Consensus 120 ~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~ 155 (341)
T 3fpp_A 120 ATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTR 155 (341)
T ss_dssp HHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCE
Confidence 344455555555666666666666666666665443
No 202
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=25.33 E-value=2.8e+02 Score=22.76 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 428 KTSLLETAEGKIAELTAKINEQQKLIQ 454 (682)
Q Consensus 428 l~~~l~~l~~~~~~l~~el~~~~~l~~ 454 (682)
+...++.++.++..|...++++.-.+.
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ 51 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLN 51 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 333333333333333333333333333
No 203
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=24.80 E-value=5.3e+02 Score=25.76 Aligned_cols=24 Identities=8% Similarity=0.069 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 324 ETALSNEREQHMNEIKKLNALLIE 347 (682)
Q Consensus 324 e~~L~~~r~~~~~~~~~L~~ql~~ 347 (682)
......++......+.+|...+..
T Consensus 164 ~~~a~~L~~~l~~~~eeLr~~L~p 187 (273)
T 3s84_A 164 KKNAEELKARISASAEELRQRLAP 187 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455444433
No 204
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=24.76 E-value=1.9e+02 Score=22.09 Aligned_cols=46 Identities=22% Similarity=0.153 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005704 419 TQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY 464 (682)
Q Consensus 419 t~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~ 464 (682)
..++..+..++..+..+..++.....+++.+-...-.|+..+.+..
T Consensus 3 ~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYR 48 (59)
T 1gk6_A 3 KQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYR 48 (59)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3455566666667777777777777777777666677777776655
No 205
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=24.16 E-value=1.7e+02 Score=28.11 Aligned_cols=47 Identities=21% Similarity=0.376 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhh---HHHHHHhhh
Q 005704 514 DRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQL---YGKIRFVQD 560 (682)
Q Consensus 514 DRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kL---yEkiRylqs 560 (682)
++-|.-+.+--+|...+...|..|+.||..|+..|..| .|.+.||.+
T Consensus 104 E~RR~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~ 153 (209)
T 2wvr_A 104 EKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAE 153 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 206
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=23.82 E-value=50 Score=33.08 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=19.6
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 005704 134 ELESENRKMKIELEEYRTEATHLKNQQSTIRRLE 167 (682)
Q Consensus 134 ~le~E~~kL~~el~~l~~el~~lknq~~~~~~Lk 167 (682)
.+..||.+|++++..|+.++..+..-..+..+|+
T Consensus 23 ~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr 56 (255)
T 2j5u_A 23 NTYTENQHLKERLEELAQLESEVADLKKENKDLK 56 (255)
T ss_dssp ---CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556888888888877776666554444444443
No 207
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=23.59 E-value=1.7e+02 Score=31.13 Aligned_cols=53 Identities=13% Similarity=0.249 Sum_probs=43.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005704 413 KMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS 465 (682)
Q Consensus 413 kL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~ 465 (682)
.+..++..++.+..+++..++.++.++..+.+.+.+-+.+-.+|-+.+..+..
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 46677778888888888888888888888888888888888899999887764
No 208
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=23.31 E-value=2.9e+02 Score=22.14 Aligned_cols=46 Identities=13% Similarity=0.233 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 415 EHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDI 460 (682)
Q Consensus 415 ~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL 460 (682)
...+..+....+++..++...+.++..+..+-.....+.+.||.-|
T Consensus 3 ~k~v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~L 48 (71)
T 1uix_A 3 TSDVANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQL 48 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555433333334444444444
No 209
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=23.27 E-value=3.1e+02 Score=24.42 Aligned_cols=21 Identities=5% Similarity=0.196 Sum_probs=10.3
Q ss_pred HhhHHHHHHHHHHHHHHHHhh
Q 005704 137 SENRKMKIELEEYRTEATHLK 157 (682)
Q Consensus 137 ~E~~kL~~el~~l~~el~~lk 157 (682)
..+..|..++.+|.+.+..+.
T Consensus 13 ~KvAElekkv~~lek~lk~~~ 33 (125)
T 2pms_C 13 AKIAELENQVHRLEQELKEID 33 (125)
T ss_dssp HHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 344445555555555544443
No 210
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=23.24 E-value=1.1e+02 Score=30.48 Aligned_cols=43 Identities=23% Similarity=0.290 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHH
Q 005704 504 SMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRF 557 (682)
Q Consensus 504 siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRy 557 (682)
+.++.+.-|.+|+|.||.+||.++..+-... .+|-.+|.++.-
T Consensus 65 ~aVSL~erQ~~~LR~r~~~Le~~L~~Li~~A-----------~~Ne~l~~~~~~ 107 (252)
T 3e98_A 65 DAVSLVERQVRLLRERNIEMRHRLSQLMDVA-----------RENDRLFDKTRR 107 (252)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 5678889999999999999999997776433 356666665544
No 211
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=22.94 E-value=1.9e+02 Score=30.96 Aligned_cols=54 Identities=9% Similarity=0.151 Sum_probs=48.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005704 412 RKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGYS 465 (682)
Q Consensus 412 rkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~~ 465 (682)
..|..++..++....++...++.++.++..+.+++-+...+-.+|-+.+..+..
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRD 59 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 468888999999999999999999999999999999989999999999988874
No 212
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=22.49 E-value=3.2e+02 Score=22.31 Aligned_cols=64 Identities=17% Similarity=0.141 Sum_probs=50.8
Q ss_pred chHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005704 401 SKMESLLLDKNRKMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDILKGY 464 (682)
Q Consensus 401 ~~LE~lLl~kNrkL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~~~~ 464 (682)
.+|-.-|.++.-..+.||..||...++|..=-..++.-+..+..+-.++..-|..|......+.
T Consensus 10 DKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 10 DKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666678888889999999999999999888778888888888887777777777766555544
No 213
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=22.19 E-value=1.7e+02 Score=20.76 Aligned_cols=33 Identities=24% Similarity=0.355 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHhhHHHHHHhhh
Q 005704 528 RQLKEKIGVLTAELEKTKADNVQLYGKIRFVQD 560 (682)
Q Consensus 528 ~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRylqs 560 (682)
.++..++.+|.+|-+.|+..|+.--..|-||+.
T Consensus 6 aqlenevaslenenetlkkknlhkkdliaylek 38 (49)
T 3he5_A 6 AQLENEVASLENENETLKKKNLHKKDLIAYLEK 38 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccHHHHHhcccHHHHHHHHHH
Confidence 344556667777788888888777777777753
No 214
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=21.84 E-value=1.7e+02 Score=23.62 Aligned_cols=45 Identities=11% Similarity=0.239 Sum_probs=29.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005704 501 DQSSMLKVICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTK 545 (682)
Q Consensus 501 ~~~siL~Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk 545 (682)
+-.+||..-..-..-+..++..|+.++..+..++..|+..+..|.
T Consensus 37 sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 37 SRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666666666666777777777777666666666666665543
No 215
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=21.82 E-value=2.6e+02 Score=20.97 Aligned_cols=49 Identities=27% Similarity=0.279 Sum_probs=29.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005704 413 KMEHELTQLKVKLSEKTSLLETAEGKIAELTAKINEQQKLIQKLEDDIL 461 (682)
Q Consensus 413 kL~~eLt~LR~~~~~l~~~l~~l~~~~~~l~~el~~~~~l~~kLE~DL~ 461 (682)
.++..+............++..+...+..+...++....-|.++...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 9 TLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445554555556666666666666666666666666666665543
No 216
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=21.68 E-value=1.3e+02 Score=19.01 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 005704 523 TEEEVRQLKEKIGVLTAELEKTK 545 (682)
Q Consensus 523 LE~el~~~~~~i~~lr~Ei~~Lk 545 (682)
||=+...+.++|..|++.+.+|+
T Consensus 5 lefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 5 LEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhc
Confidence 44455555666666666666665
No 217
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=21.56 E-value=3.1e+02 Score=22.71 Aligned_cols=44 Identities=20% Similarity=0.348 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHh
Q 005704 508 VICNQRDRFRARLRETEEEVRQLKEKIGVLTAELEKTKADNVQLYGKIRFV 558 (682)
Q Consensus 508 Ivt~QRDRfr~r~~ELE~el~~~~~~i~~lr~Ei~~Lk~DN~kLyEkiRyl 558 (682)
+-..|++.+..=...+++++.....+|..++.+|+..+. +|+.|
T Consensus 34 frqkekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~-------~i~~l 77 (84)
T 1gmj_A 34 FRARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQ-------SIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHh
No 218
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=21.50 E-value=1.2e+02 Score=20.72 Aligned_cols=28 Identities=14% Similarity=0.326 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005704 519 RLRETEEEVRQLKEKIGVLTAELEKTKA 546 (682)
Q Consensus 519 r~~ELE~el~~~~~~i~~lr~Ei~~Lk~ 546 (682)
|..+||..+..+-.+...+.+|+..|+.
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4567888888888888888888888876
No 219
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=21.48 E-value=2.7e+02 Score=23.53 Aligned_cols=43 Identities=21% Similarity=0.285 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCh-------------hhHHHHHHHHHHHH
Q 005704 337 EIKKLNALLIEKEAALEDMKKELQARPTS-------------KMVDDLRKKVKILQ 379 (682)
Q Consensus 337 ~~~~L~~ql~~~~~~~~~le~~l~~~~~~-------------sDyeelK~EL~~Lk 379 (682)
.+...+..+++....+..|+-++..+|.. +|++.+|+++.-++
T Consensus 39 ~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~~ 94 (102)
T 1vcs_A 39 MVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSR 94 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666777777777776522 35555666655554
No 220
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=21.45 E-value=4.4e+02 Score=24.70 Aligned_cols=74 Identities=12% Similarity=0.172 Sum_probs=0.0
Q ss_pred cHHHHHhhHHHHHHhHHHHHHHhhhhhhhHHHHHHHhhhhccCCCCHHHHHHHHHHHhhhhhhHHhhHHHHHHHHH
Q 005704 73 PEEKLSLFNSLLKGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASIAEQDLKLSELESENRKMKIELEE 148 (682)
Q Consensus 73 ~eekl~~~~~LLK~yQ~EID~LTkRsK~aE~aFl~~Y~~L~eaPDP~PlLe~s~~~~~~~~~le~E~~kL~~el~~ 148 (682)
+++...+++.|.+.|+.++..|-..-..--..+-.++.. +-|||.-+=..+-+....-..+..+..+.+.++.+
T Consensus 69 T~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a--~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~em~K 142 (175)
T 3lay_A 69 TTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTA--SSPDTAKINAVAKEMESLGQKLDEQRVKRDVAMAQ 142 (175)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 221
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=21.39 E-value=79 Score=22.99 Aligned_cols=19 Identities=16% Similarity=0.544 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005704 638 TFAFFYTILLHVLVFTCLY 656 (682)
Q Consensus 638 ~~f~~Y~~~LH~lv~~~ly 656 (682)
.+|+-+|++|-||+++.+.
T Consensus 30 elfvnfclilicllli~ii 48 (52)
T 1fjk_A 30 NLFINFCLILIFLLLICII 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5788899998888865544
No 222
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=20.55 E-value=8.4e+02 Score=26.45 Aligned_cols=28 Identities=18% Similarity=0.391 Sum_probs=14.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 005704 403 MESLLLDKNRKMEHELTQLKVKLSEKTS 430 (682)
Q Consensus 403 LE~lLl~kNrkL~~eLt~LR~~~~~l~~ 430 (682)
+--.|+.-.+.+...|..|+..++.+..
T Consensus 87 l~D~L~k~q~~V~~~LqeLe~~l~~lsn 114 (464)
T 1m1j_B 87 LQTTLLKQEKTVKPVLRDLKDRVAKFSD 114 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHhHHHHHHHHHHHHhh
Confidence 3333445555555555555555555543
No 223
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=20.18 E-value=4.7e+02 Score=23.45 Aligned_cols=104 Identities=11% Similarity=0.224 Sum_probs=0.0
Q ss_pred HhhhhhhHHhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhH---------------
Q 005704 129 DLKLSELESENRKMKIELEEYRTEATHLKNQQSTIRRLEERNRQLEQQMEEKVKEIVEIKQRGLA--------------- 193 (682)
Q Consensus 129 ~~~~~~le~E~~kL~~el~~l~~el~~lknq~~~~~~Lkerl~~lE~~~e~~~~~~~~~~E~el~--------------- 193 (682)
+.++..++.+++.|...+..|+.++..+..+...++.-..++.+++... +.=..+.
T Consensus 1 ~~~m~~~~~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l---------~~l~~l~~~~~~ilvplg~~~y 71 (151)
T 2zdi_C 1 MIRMAQNNKELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETL---------ENLKKIEEEKPEILVPIGAGSF 71 (151)
T ss_dssp ---CCSSTTHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHH---------HHHTTCCCSSCEEEEECSSSCE
T ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHhcccCCceEEEEcCCCeE
Q ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 005704 194 ----------------------EENQKTLEILQEREQALQDQLRQAKDSVATMQKLHELAQSQLFEVRAQ 241 (682)
Q Consensus 194 ----------------------~~~eek~~~~~ere~~L~~ql~~ae~~l~eL~~~le~~Q~eL~~l~~k 241 (682)
-.+++.+.-+..|...+...++.++..+..++..+...+..|..+...
T Consensus 72 v~g~i~~~~~V~v~lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~ 141 (151)
T 2zdi_C 72 LKGVIVDKNNAIVSVGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQK 141 (151)
T ss_dssp EEEECSCTTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred EEEEECCCCEEEEEeCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!