Query 005706
Match_columns 682
No_of_seqs 199 out of 307
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 12:31:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005706.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005706hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06045 Rhamnogal_lyase: Rham 100.0 3.8E-59 8.3E-64 461.7 21.3 201 51-251 3-203 (203)
2 PF09284 RhgB_N: Rhamnogalactu 100.0 4.2E-53 9.1E-58 424.6 24.2 240 57-374 1-244 (249)
3 PF14683 CBM-like: Polysacchar 100.0 1.6E-45 3.5E-50 359.0 11.2 165 487-676 1-167 (167)
4 PF14686 fn3_3: Polysaccharide 99.9 8.8E-22 1.9E-26 175.7 9.0 93 382-478 1-95 (95)
5 PF13620 CarboxypepD_reg: Carb 98.7 5.3E-08 1.2E-12 83.1 9.0 80 385-480 1-81 (82)
6 PF13715 DUF4480: Domain of un 98.4 2.5E-06 5.5E-11 74.0 10.4 88 385-494 1-88 (88)
7 cd03863 M14_CPD_II The second 97.9 3.3E-05 7.2E-10 85.1 9.9 78 383-480 296-373 (375)
8 cd03864 M14_CPN Peptidase M14 97.9 4.6E-05 1E-09 84.5 9.5 101 344-480 291-391 (392)
9 cd03865 M14_CPE_H Peptidase M1 97.9 3.7E-05 8E-10 85.4 8.4 98 347-480 304-401 (402)
10 cd06245 M14_CPD_III The third 97.7 0.00017 3.7E-09 79.3 9.8 76 383-480 286-361 (363)
11 cd03868 M14_CPD_I The first ca 97.5 0.00028 6.1E-09 77.8 8.6 76 383-479 295-371 (372)
12 cd03858 M14_CP_N-E_like Carbox 97.5 0.0004 8.7E-09 76.4 9.7 72 384-475 298-370 (374)
13 cd03867 M14_CPZ Peptidase M14- 97.2 0.0014 3E-08 73.0 9.0 72 384-475 318-391 (395)
14 cd03866 M14_CPM Peptidase M14 96.4 0.011 2.3E-07 65.6 8.8 70 383-470 294-363 (376)
15 PRK15036 hydroxyisourate hydro 95.5 0.036 7.9E-07 53.2 6.7 65 382-454 25-93 (137)
16 PF08400 phage_tail_N: Prophag 95.4 0.082 1.8E-06 50.6 8.7 78 385-471 4-81 (134)
17 PF08308 PEGA: PEGA domain; I 94.8 0.15 3.2E-06 42.6 7.8 45 434-482 25-69 (71)
18 PF03422 CBM_6: Carbohydrate b 93.5 0.57 1.2E-05 42.9 9.6 80 585-677 44-124 (125)
19 cd00421 intradiol_dioxygenase 93.5 0.22 4.8E-06 48.0 7.1 64 382-448 10-80 (146)
20 cd03869 M14_CPX_like Peptidase 93.5 0.18 4E-06 56.5 7.3 68 382-470 328-395 (405)
21 KOG1948 Metalloproteinase-rela 92.4 0.38 8.1E-06 57.6 8.0 55 384-454 316-371 (1165)
22 PF09430 DUF2012: Protein of u 92.4 0.54 1.2E-05 44.1 7.7 40 426-468 22-61 (123)
23 PF05738 Cna_B: Cna protein B- 92.0 0.64 1.4E-05 38.4 6.9 43 428-473 21-67 (70)
24 COG3485 PcaH Protocatechuate 3 91.0 0.6 1.3E-05 48.5 7.0 65 382-449 71-144 (226)
25 PF07210 DUF1416: Protein of u 90.0 3 6.4E-05 37.0 9.2 62 382-457 6-67 (85)
26 cd03463 3,4-PCD_alpha Protocat 89.5 0.75 1.6E-05 46.4 6.1 64 381-447 34-106 (185)
27 cd03459 3,4-PCD Protocatechuat 88.6 0.96 2.1E-05 44.5 6.0 64 382-448 14-87 (158)
28 cd03462 1,2-CCD chlorocatechol 88.5 1.3 2.8E-05 46.6 7.2 64 381-447 97-165 (247)
29 TIGR02465 chlorocat_1_2 chloro 88.2 0.76 1.7E-05 48.4 5.3 64 382-448 97-165 (246)
30 PF07495 Y_Y_Y: Y_Y_Y domain; 88.0 0.74 1.6E-05 37.5 4.1 27 427-453 21-48 (66)
31 KOG1948 Metalloproteinase-rela 86.4 1.7 3.7E-05 52.4 7.2 58 384-454 119-176 (1165)
32 cd03464 3,4-PCD_beta Protocate 85.9 1.4 3.1E-05 45.6 5.7 65 381-448 63-137 (220)
33 PF00775 Dioxygenase_C: Dioxyg 85.7 1.9 4.2E-05 43.4 6.4 64 382-448 28-98 (183)
34 PF03170 BcsB: Bacterial cellu 85.6 2.2 4.8E-05 50.1 7.9 78 571-662 29-111 (605)
35 cd03458 Catechol_intradiol_dio 85.2 2.6 5.6E-05 44.7 7.3 65 381-448 102-171 (256)
36 TIGR02423 protocat_alph protoc 84.8 1.9 4.2E-05 43.8 5.9 65 381-448 37-111 (193)
37 TIGR02962 hdxy_isourate hydrox 83.2 2.6 5.7E-05 39.2 5.6 58 386-452 3-66 (112)
38 TIGR02438 catachol_actin catec 83.1 1.8 4E-05 46.4 5.2 65 381-448 130-199 (281)
39 TIGR02422 protocat_beta protoc 82.8 2.9 6.3E-05 43.4 6.4 67 379-448 56-132 (220)
40 PRK10340 ebgA cryptic beta-D-g 81.0 36 0.00079 42.9 16.1 42 55-97 715-756 (1021)
41 cd03461 1,2-HQD Hydroxyquinol 79.5 2.9 6.4E-05 44.8 5.2 65 381-448 118-187 (277)
42 PF02837 Glyco_hydro_2_N: Glyc 78.1 3.1 6.8E-05 39.9 4.6 69 572-662 71-140 (167)
43 cd03460 1,2-CTD Catechol 1,2 d 76.6 5.7 0.00012 42.7 6.4 65 381-448 122-191 (282)
44 PRK11114 cellulose synthase re 76.5 4.1 8.9E-05 49.4 5.9 75 574-661 84-163 (756)
45 TIGR02439 catechol_proteo cate 76.1 5.5 0.00012 42.9 6.1 65 381-448 126-195 (285)
46 KOG4342 Alpha-mannosidase [Car 75.9 10 0.00022 44.7 8.4 49 55-106 706-756 (1078)
47 PF00576 Transthyretin: HIUase 75.6 5.3 0.00012 37.2 5.1 59 386-452 3-67 (112)
48 PF02929 Bgal_small_N: Beta ga 75.1 28 0.00061 37.1 11.1 30 67-97 1-30 (276)
49 cd05469 Transthyretin_like Tra 74.7 5.8 0.00013 37.1 5.1 49 399-452 14-66 (113)
50 smart00606 CBD_IV Cellulose Bi 74.0 40 0.00087 31.0 10.7 89 571-676 39-129 (129)
51 KOG2649 Zinc carboxypeptidase 73.5 10 0.00022 43.5 7.5 104 343-482 352-455 (500)
52 cd05821 TLP_Transthyretin Tran 73.4 9.1 0.0002 36.3 6.1 62 383-452 6-72 (121)
53 PF07748 Glyco_hydro_38C: Glyc 73.2 27 0.00059 38.9 11.0 151 42-200 51-225 (457)
54 PRK09525 lacZ beta-D-galactosi 73.2 93 0.002 39.5 16.5 41 56-97 741-781 (1027)
55 PF14315 DUF4380: Domain of un 72.3 63 0.0014 34.4 12.9 33 64-96 5-38 (274)
56 PF13364 BetaGal_dom4_5: Beta- 71.9 7.3 0.00016 35.9 5.0 54 588-658 50-104 (111)
57 COG2351 Transthyretin-like pro 71.4 13 0.00028 35.1 6.5 66 384-461 9-79 (124)
58 cd05822 TLP_HIUase HIUase (5-h 69.7 9.9 0.00021 35.5 5.4 48 399-452 14-66 (112)
59 PF03170 BcsB: Bacterial cellu 69.2 7.4 0.00016 45.8 5.6 78 571-661 324-409 (605)
60 PF10670 DUF4198: Domain of un 69.0 15 0.00033 36.5 7.1 62 383-452 150-211 (215)
61 PF14849 YidC_periplas: YidC p 66.2 85 0.0018 32.6 12.3 98 65-173 1-115 (270)
62 smart00095 TR_THY Transthyreti 65.2 15 0.00032 34.8 5.7 62 383-452 3-69 (121)
63 PLN03059 beta-galactosidase; P 63.9 7.2 0.00016 47.7 4.1 86 571-663 621-716 (840)
64 cd03457 intradiol_dioxygenase_ 63.5 14 0.0003 37.5 5.5 63 383-447 26-100 (188)
65 PF14900 DUF4493: Domain of un 61.6 2E+02 0.0043 29.6 14.0 54 424-480 47-106 (235)
66 TIGR03593 yidC_nterm membrane 56.7 2E+02 0.0044 31.6 13.6 31 62-92 72-102 (366)
67 PF02369 Big_1: Bacterial Ig-l 56.3 55 0.0012 29.4 7.6 64 384-454 25-90 (100)
68 PF09912 DUF2141: Uncharacteri 48.5 40 0.00087 31.2 5.5 48 403-453 12-62 (112)
69 PF01060 DUF290: Transthyretin 47.7 35 0.00076 29.5 4.7 48 387-443 1-48 (80)
70 PRK10340 ebgA cryptic beta-D-g 47.0 25 0.00053 44.4 5.0 68 572-661 112-179 (1021)
71 PF01190 Pollen_Ole_e_I: Polle 46.2 37 0.00081 30.1 4.8 36 399-439 19-54 (97)
72 PF08531 Bac_rhamnosid_N: Alph 44.7 24 0.00052 34.8 3.7 60 587-662 5-66 (172)
73 PF01263 Aldose_epim: Aldose 1 40.5 1.9E+02 0.004 30.3 9.8 34 64-97 1-37 (300)
74 PF13754 Big_3_4: Bacterial Ig 40.2 57 0.0012 26.2 4.5 29 424-452 2-32 (54)
75 PF11008 DUF2846: Protein of u 40.0 34 0.00074 31.5 3.7 44 432-475 56-99 (117)
76 PF03944 Endotoxin_C: delta en 39.0 1.2E+02 0.0026 29.0 7.4 95 574-677 41-140 (143)
77 PRK09525 lacZ beta-D-galactosi 30.1 80 0.0017 40.0 5.7 68 572-661 123-191 (1027)
78 PF11797 DUF3324: Protein of u 29.9 59 0.0013 31.1 3.6 30 440-469 102-131 (140)
79 PF14200 RicinB_lectin_2: Rici 28.4 54 0.0012 29.1 2.9 48 387-444 24-72 (105)
80 PF07550 DUF1533: Protein of u 28.2 45 0.00098 27.8 2.2 19 641-659 36-55 (65)
81 PRK13211 N-acetylglucosamine-b 28.1 2.5E+02 0.0055 32.7 8.8 66 375-452 320-387 (478)
82 PF12866 DUF3823: Protein of u 25.2 3E+02 0.0065 28.7 8.1 61 383-450 21-83 (222)
83 smart00634 BID_1 Bacterial Ig- 24.7 3.6E+02 0.0077 23.5 7.4 65 383-455 19-85 (92)
84 PF03785 Peptidase_C25_C: Pept 24.4 2.3E+02 0.0049 25.3 5.8 39 402-452 26-69 (81)
85 PRK10150 beta-D-glucuronidase; 23.4 1.4E+02 0.003 35.3 5.8 65 574-660 70-135 (604)
86 PF13313 DUF4082: Domain of un 22.5 5.1E+02 0.011 25.6 8.5 80 73-178 23-105 (149)
87 KOG1539 WD repeat protein [Gen 21.6 2E+02 0.0043 35.5 6.5 63 48-111 208-275 (910)
88 PRK01318 membrane protein inse 21.4 1.1E+03 0.024 27.7 12.6 28 65-92 40-67 (521)
89 PF04571 Lipin_N: lipin, N-ter 20.3 1.5E+02 0.0032 27.9 4.1 38 562-611 34-71 (110)
No 1
>PF06045 Rhamnogal_lyase: Rhamnogalacturonate lyase family; InterPro: IPR010325 Rhamnogalacturonate lyase degrades the rhamnogalacturonan I (RG-I) backbone of pectin []. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi.
Probab=100.00 E-value=3.8e-59 Score=461.67 Aligned_cols=201 Identities=67% Similarity=1.154 Sum_probs=196.8
Q ss_pred ccccccEEEEEeCcEEEEECCeEEEEEeCCCeeEEEEEEcCeecccccccCCCcceeeEEEeCCCCCCCceeeeccceEE
Q 005706 51 AMPTQAVRLHIKDHHVVLDNGILQVTLSKPGGIVTGIRYNGIDNLLEFRNKETNRGYWDLMWNPPGGKGMFDVISGTSFR 130 (682)
Q Consensus 51 ~~~~a~~~~~~~g~~~vidNg~l~vtv~k~~G~itsi~y~G~enll~~~~~~~~~gY~D~~w~~~g~~g~~~~~~gt~~~ 130 (682)
+++.++|+|++++.+|+||||+|+|||+||+|+||+|+|+|++|||+..+++.++||||++|+.+|..++|+++.||+|+
T Consensus 3 ~~~~~~V~L~~~~~~VvldNGiVqVtls~p~G~VtgIkYnGi~NLle~~n~e~nrGYwD~~W~~~G~~~~~~~~~gt~f~ 82 (203)
T PF06045_consen 3 ASSSSGVTLTVQGRQVVLDNGIVQVTLSKPGGIVTGIKYNGIDNLLEVANKENNRGYWDLVWNEPGSKGKFDRIKGTEFS 82 (203)
T ss_pred cccCCCeEEEEcCCEEEEECCEEEEEEcCCCceEEEEEECCEehhhcccCcccCCceEEEecccCCccccccccCCcEEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred EEEecCCEEEEEEEEeecCCCCCCcccceeeEEEEEecCCceeEEEEEeeccccCCCCCccceEEEEEeCccCccceeee
Q 005706 131 VVVENEEQVELSFLRTWASSHEGNYIPLNIDKRFIMLRGSSGFYSYAIYEHLKEWPAFTLGQTRFTFKLRKEKFRYMVIA 210 (682)
Q Consensus 131 vi~~~~~~i~Vs~~~~~~~s~~g~~~~l~l~~~~v~r~G~sgiY~y~~~~~~~~~p~~~lgE~R~v~Rl~~~~f~~~~~~ 210 (682)
||++++++|||||+++|+||++++.+||+||+||||++|+||||+|+|++|+++||+++|+|+|+||||++++|+||+++
T Consensus 83 Vi~~te~qVevSF~r~w~~s~~~~~~plnIDkryVm~rG~SGfY~YAI~e~~~~~Pa~~l~q~R~vfKl~~d~F~ymai~ 162 (203)
T PF06045_consen 83 VIEQTEEQVEVSFSRTWDPSLDGKSVPLNIDKRYVMLRGSSGFYSYAIFEHPAGWPAFDLGQTRIVFKLNKDKFHYMAIS 162 (203)
T ss_pred EEEcCCCeEEEEEEcccCcCCCCCcceeEeeEEEEEecCCceEEEEEEEecCCCCCCcccceeEEEEECCccccceEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCcCCCCCCCccccccceeeecCCCCCCCCcee
Q 005706 211 DNRHRQMPLPEDLSTGRGQPLAYPEAVQLVNPTDPEHQGEV 251 (682)
Q Consensus 211 d~r~~~mP~~~d~~~~~~~~l~~~da~~l~~~~~~~~~G~~ 251 (682)
|+|||.||+|+|+++++|++|+||||++|+||+||+|+|||
T Consensus 163 d~rqr~mP~~~D~~~~~~~~l~y~eav~l~~p~~~~~~gev 203 (203)
T PF06045_consen 163 DDRQRIMPSPDDRDPARGQPLAYPEAVLLVNPINPQFRGEV 203 (203)
T ss_pred ccccccCCChHHccccCCCcccCchhhhcCCCCCccccccC
Confidence 99999999999999999999999999999999999999986
No 2
>PF09284 RhgB_N: Rhamnogalacturonase B, N-terminal; InterPro: IPR015364 This domain is found in prokaryotic enzyme rhamnogalacturonase B, it adopts a structure consisting of a beta supersandwich, with eighteen strands in two beta-sheets. The exact function of the domain is unknown, but a putative role includes carbohydrate-binding []. ; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=100.00 E-value=4.2e-53 Score=424.57 Aligned_cols=240 Identities=19% Similarity=0.321 Sum_probs=164.9
Q ss_pred EEEEEeCcEEEEECC-eEEEEEeCCCeeEEEEEEcCeecccccccCCCcceeeEEEeCCCCCCCceeeeccceEEEEEec
Q 005706 57 VRLHIKDHHVVLDNG-ILQVTLSKPGGIVTGIRYNGIDNLLEFRNKETNRGYWDLMWNPPGGKGMFDVISGTSFRVVVEN 135 (682)
Q Consensus 57 ~~~~~~g~~~vidNg-~l~vtv~k~~G~itsi~y~G~enll~~~~~~~~~gY~D~~w~~~g~~g~~~~~~gt~~~vi~~~ 135 (682)
|+++++|+++|||.| .|+|+|+|++|||+||+|||+| |+ +.+|.+|++ +| +|++.+.+++.
T Consensus 1 FG~t~sg~~~viDtga~Lvf~V~~s~gDitSi~y~g~E-lQ-~~~k~ShI~-------SG---------LGsatVs~~~~ 62 (249)
T PF09284_consen 1 FGYTDSGSNYVIDTGAGLVFKVSKSNGDITSIKYNGTE-LQ-YSSKNSHIN-------SG---------LGSATVSITTS 62 (249)
T ss_dssp -EEEE-SSEEEEE---TEEEEEETTT--EEEEEETTEE--B--SSS-BEET-------T-----------SS-EEEEEEE
T ss_pred CceEecCCcEEEECCCCEEEEEecCCCCeEEEEECCEe-ee-cCCccceec-------cC---------CCccEEEEEee
Confidence 789999999999955 4999999999999999999998 64 888999866 54 67777778887
Q ss_pred CCEEEEEEEEeecCCCCCCcccceeeEEEEEecCCceeEEEEEeeccccCCCCCccceEEEEEeCccCccceeeeccccc
Q 005706 136 EEQVELSFLRTWASSHEGNYIPLNIDKRFIMLRGSSGFYSYAIYEHLKEWPAFTLGQTRFTFKLRKEKFRYMVIADNRHR 215 (682)
Q Consensus 136 ~~~i~Vs~~~~~~~s~~g~~~~l~l~~~~v~r~G~sgiY~y~~~~~~~~~p~~~lgE~R~v~Rl~~~~f~~~~~~d~r~~ 215 (682)
.++|+|+|... +|+||||+|+|++.|||++..+. +++|+|||||+||++++||+-.
T Consensus 63 ~~~IkVt~~~~------------tLthyyv~r~g~~~IYmaT~~~~-----e~~igelRfIaRL~~~~lpn~~------- 118 (249)
T PF09284_consen 63 GDYIKVTCKTG------------TLTHYYVARPGENNIYMATYITA-----EPSIGELRFIARLNRSILPNEY------- 118 (249)
T ss_dssp TTEEEEEEE-S------------SEEEEEEEETT--EEEEEEEESS-------TTS-EEEEEEE-TTTS-EEE-------
T ss_pred CCEEEEEEEcC------------CeEEEEEEecCCceEEEEeccCC-----CCCccceEEEEEcccccCCCCC-------
Confidence 88999999983 89999999999999999999766 7899999999999999999821
Q ss_pred cCCCCcCCCCCCCccccccceeeecCCCCCCCCceeeeeeeccccccccceEEEEeCCCceEEEEEcCCCCcccCCCcee
Q 005706 216 QMPLPEDLSTGRGQPLAYPEAVQLVNPTDPEHQGEVDDKYQYSCENKDLKVHGWICRTTPVGFWLIIPSDEFRSGGPLKQ 295 (682)
Q Consensus 216 ~mP~~~d~~~~~~~~l~~~da~~l~~~~~~~~~G~~~sKY~~s~~~~D~~vhG~~s~g~~vG~W~I~ps~E~~sGGP~kq 295 (682)
|......+.++++||.+|+++.+ +|+++||||++.++||+++|||+ |+++|+|||++++|.+|||||+|
T Consensus 119 --~~~~~~~~~g~taIEgsDVf~~~-------~G~TrSKfYSs~r~IDd~~hgv~--g~~vgv~mi~~~~E~SSGGPFfR 187 (249)
T PF09284_consen 119 --PYGDVSTTDGGTAIEGSDVFLVS-------DGQTRSKFYSSQRFIDDDVHGVS--GSAVGVYMIMSNYEKSSGGPFFR 187 (249)
T ss_dssp --TTGGGG--TT-EEEETTTEEEE--------TTEEEEGGGG--BGGG-SEEEEE---SS-EEEEE----TT-SS-TT-B
T ss_pred --CcccccccCCceEEeeccEEEec-------CceEeeeeccccceeccceEEEe--cCCeEEEEEeCCccccCCCCchh
Confidence 22222224578889999999998 89999999999999999999998 88999999999999999999999
Q ss_pred ccccccCCc---EEEEEeecccccccceeecCCCCCCceeeeeEEEEEcCCCCCCCcchhHHHHHHHhhhhccCCCCCCC
Q 005706 296 NLTSHVGPT---TLAVFLSGHYAGKYMETHIGQDEPWKKVFGPVFIYLNSAADGDDPLWLWEDAKIKMMSEVQSWPYNFP 372 (682)
Q Consensus 296 dL~~h~g~~---~l~y~~s~Hy~g~~~~~~~~~Ge~w~Kv~GP~~~y~N~g~~~~~~~~l~~DA~~~~~~E~~~Wpy~f~ 372 (682)
||++|.++. ||+||+|+|. |||++|.| |||||+|+|++|++|+. .+.+++|+
T Consensus 188 DI~~~~~~~~~~Ly~ymnSgH~----qTE~~R~G-----LhGPYaL~FT~g~~Ps~----------------~~~D~sff 242 (249)
T PF09284_consen 188 DINTNNGGDGNELYNYMNSGHT----QTEPYRMG-----LHGPYALAFTDGGAPSA----------------SDLDTSFF 242 (249)
T ss_dssp ---EEE-SS-EEEEEEEE-STT------S----E-----EEEEEEEEEESS----S---------------------GGG
T ss_pred hhhhccCCccceeeeeEecCcc----cCchhccc-----cCCceEEEEcCCCCCCC----------------ccccccch
Confidence 999998764 9999999998 67889999 99999999999999742 13477888
Q ss_pred CC
Q 005706 373 AS 374 (682)
Q Consensus 373 ~s 374 (682)
++
T Consensus 243 ~~ 244 (249)
T PF09284_consen 243 DD 244 (249)
T ss_dssp GG
T ss_pred hh
Confidence 76
No 3
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=100.00 E-value=1.6e-45 Score=359.02 Aligned_cols=165 Identities=52% Similarity=0.888 Sum_probs=114.5
Q ss_pred CCeeEEeccCCCccccccCCCCccccccccccCCchhhcccccccccccCCCCCeeEEeeccCCCCCceeEEEEEecCCc
Q 005706 487 PTLWEIGIPDRSAREFNVPDPDPKYVNRLFVNHPDRFRQYGLWSRYTELYPNEDLVYTIGVSDYSKDWFFAQVVREMDNK 566 (682)
Q Consensus 487 ~~LWeIGi~Drta~eF~~~d~~~~~~nk~~~~hp~~~R~yglW~~y~~~~P~~dl~ytVG~S~~~~Dw~ya~~~~~~~~~ 566 (682)
++|||||+|||+|.||+++| |+++|||| |++|+++||++|++||||+| +++||||||+++ .+
T Consensus 1 ~~iW~IG~~Drta~eF~~~~-------------~~~~r~~~-~~d~~~~~p~~~~~ytVG~S-~~~Dw~y~~~~~--~~- 62 (167)
T PF14683_consen 1 PTIWQIGTPDRTAAEFRNGD-------------PDKYRQYG-WSDYSRDFPWEDLTYTVGSS-PAKDWPYAQWGR--VN- 62 (167)
T ss_dssp SEEEEEE-SSSS-TTSBTHH--------------HHTTS---TT--TTS----S-EEETTTS--GGGSBSEEETT--TS-
T ss_pred CcceEeCCCCCCchhhccCC-------------hhhhhhcC-cccchhhCCCCCCEEEEccC-cccCCcEEEEec--cC-
Confidence 58999999999999999974 25699998 99999999998999999999 889999999973 34
Q ss_pred ccCcccEEEEEEeCCCCCCCcEEEEEEEecc-CCCeEEEEEcCCCCCCCcccccccCCCCceecceee-eeeEEEEEEee
Q 005706 567 TYQGTTWQIKFKLDHVDRNSSYKLRVAIASA-TLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIH-GLYLLYHVNIP 644 (682)
Q Consensus 567 ~~~~~~w~I~F~L~~~~~~~~~tLriala~a-~~~~~~V~vN~~~~~~p~~~~~~~~~~~~i~R~~~~-G~~~~~~~~ip 644 (682)
++|+|+|+|++++..+.+||||+||+| ++++++|+||| +.. +++. ..+++|++++|+++| |+|++++|+||
T Consensus 63 ----~~w~I~F~l~~~~~~~~~tL~i~la~a~~~~~~~V~vNg-~~~-~~~~-~~~~~d~~~~r~g~~~G~~~~~~~~ip 135 (167)
T PF14683_consen 63 ----GTWTIKFDLDAVQLAGTYTLRIALAGASAGGRLQVSVNG-WSG-PFPS-APFGNDNAIYRSGIHRGNYRLYEFDIP 135 (167)
T ss_dssp ------EEEEEEE-GGG-S--EEEEEEEEEEETT-EEEEEETT-EE-------------S--GGGT---S---EEEEEE-
T ss_pred ----CCEEEEEECCCCccCCcEEEEEEeccccCCCCEEEEEcC-ccC-Cccc-cccCCCCceeeCceecccEEEEEEEEc
Confidence 899999999999877799999999999 79999999999 554 3332 457899999999998 99999999999
Q ss_pred CCCeeeeecEEEEEeecCCCCCceEEEEEEEE
Q 005706 645 GTRFIEGENTIFLKQPRCTSPFQGIMYDYIRL 676 (682)
Q Consensus 645 a~~L~~G~NtI~lt~~~gss~f~~vmyD~IrL 676 (682)
+++|++|+|+|+|++++|++.+.+||||||||
T Consensus 136 a~~L~~G~Nti~lt~~~gs~~~~gvmyD~I~L 167 (167)
T PF14683_consen 136 ASLLKAGENTITLTVPSGSGLSPGVMYDYIRL 167 (167)
T ss_dssp TTSS-SEEEEEEEEEE-S-GGSSEEEEEEEEE
T ss_pred HHHEEeccEEEEEEEccCCCccCeEEEEEEEC
Confidence 99999999999999999987778999999998
No 4
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=99.86 E-value=8.8e-22 Score=175.68 Aligned_cols=93 Identities=47% Similarity=0.894 Sum_probs=54.4
Q ss_pred CCeEEEEEEEeccCCCcccc-CeeEEEecCCCCCCCcccccccceeEEEeCCCCceEeCCccCceeEEEEEECceeeeee
Q 005706 382 ERGCVSGRLLVQDSNDVISA-NGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYR 460 (682)
Q Consensus 382 qRGtVsG~v~~~D~~~~~pa-~~a~V~L~~~~~~gs~q~~~k~yqYwt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~ 460 (682)
+||+|+|+|+++|+-...++ ..++|+|++|++.+ |+++||||+++|++|+|+|+|||||+|+|++|++|++|||.
T Consensus 1 ~RG~VsG~l~l~dg~~~~~~~~~~~Vgl~~~~d~~----q~~~yqYwt~td~~G~Fti~~V~pGtY~L~ay~~g~~g~~~ 76 (95)
T PF14686_consen 1 QRGSVSGRLTLSDGVTNPPAGANAVVGLAPPGDFQ----QNKGYQYWTRTDSDGNFTIPNVRPGTYRLYAYADGIFGDYK 76 (95)
T ss_dssp G-BEEEEEEE---SS--TT--S-EEEEEE------------SS-EEEEE--TTSEEE---B-SEEEEEEEEE----TTEE
T ss_pred CCCEEEEEEEEccCcccCccceeEEEEeeeccccc----cCCCCcEEEEeCCCCcEEeCCeeCcEeEEEEEEecccCceE
Confidence 59999999999987322344 68999999988754 49999999999999999999999999999999999999998
Q ss_pred e-eeEEEEeCCceeeecce
Q 005706 461 S-DALVTITSGSNIKMGDL 478 (682)
Q Consensus 461 ~-~~~VtV~aG~t~~lg~l 478 (682)
. +.+|+|++|++++|++|
T Consensus 77 ~~~~~ItV~~g~~~~lg~~ 95 (95)
T PF14686_consen 77 VASDSITVSGGTTTDLGDL 95 (95)
T ss_dssp EEEEEEEE-T-EEE-----
T ss_pred EecceEEEcCCcEeccccC
Confidence 7 77899999999888754
No 5
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=98.73 E-value=5.3e-08 Score=83.09 Aligned_cols=80 Identities=29% Similarity=0.449 Sum_probs=58.8
Q ss_pred EEEEEEEeccCCCccccCeeEEEecCCCCCCCcccccccceeEEEeCCCCceEeCCccCceeEEEEEECceeeeeeee-e
Q 005706 385 CVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSD-A 463 (682)
Q Consensus 385 tVsG~v~~~D~~~~~pa~~a~V~L~~~~~~gs~q~~~k~yqYwt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~~-~ 463 (682)
+|+|+|...+| .|..+|.|.|.+.. .+..+-+.||++|+|.|++++||+|+|.+..+|+. ... .
T Consensus 1 tI~G~V~d~~g---~pv~~a~V~l~~~~---------~~~~~~~~Td~~G~f~~~~l~~g~Y~l~v~~~g~~---~~~~~ 65 (82)
T PF13620_consen 1 TISGTVTDATG---QPVPGATVTLTDQD---------GGTVYTTTTDSDGRFSFEGLPPGTYTLRVSAPGYQ---PQTQE 65 (82)
T ss_dssp -EEEEEEETTS---CBHTT-EEEET--T---------TTECCEEE--TTSEEEEEEE-SEEEEEEEEBTTEE----EEEE
T ss_pred CEEEEEEcCCC---CCcCCEEEEEEEee---------CCCEEEEEECCCceEEEEccCCEeEEEEEEECCcc---eEEEE
Confidence 68999998876 49999999997532 34578899999999999999999999999998865 333 2
Q ss_pred EEEEeCCceeeecceEE
Q 005706 464 LVTITSGSNIKMGDLVY 480 (682)
Q Consensus 464 ~VtV~aG~t~~lg~l~~ 480 (682)
.|+|.+|++..+ +|.+
T Consensus 66 ~v~v~~~~~~~~-~i~L 81 (82)
T PF13620_consen 66 NVTVTAGQTTTV-DITL 81 (82)
T ss_dssp EEEESSSSEEE---EEE
T ss_pred EEEEeCCCEEEE-EEEE
Confidence 599999998887 5765
No 6
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=98.40 E-value=2.5e-06 Score=74.01 Aligned_cols=88 Identities=28% Similarity=0.401 Sum_probs=67.0
Q ss_pred EEEEEEEeccCCCccccCeeEEEecCCCCCCCcccccccceeEEEeCCCCceEeCCccCceeEEEEEECceeeeeeeeeE
Q 005706 385 CVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSDAL 464 (682)
Q Consensus 385 tVsG~v~~~D~~~~~pa~~a~V~L~~~~~~gs~q~~~k~yqYwt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~~~~ 464 (682)
+|+|+|...+ +..|..+|.|.+.+ ....+.||++|.|+|+ +++|+|+|.+...|+. .....
T Consensus 1 ti~G~V~d~~--t~~pl~~a~V~~~~-------------~~~~~~Td~~G~F~i~-~~~g~~~l~is~~Gy~---~~~~~ 61 (88)
T PF13715_consen 1 TISGKVVDSD--TGEPLPGATVYLKN-------------TKKGTVTDENGRFSIK-LPEGDYTLKISYIGYE---TKTIT 61 (88)
T ss_pred CEEEEEEECC--CCCCccCeEEEEeC-------------CcceEEECCCeEEEEE-EcCCCeEEEEEEeCEE---EEEEE
Confidence 5899999776 23699999999954 3367889999999999 9999999999997754 45555
Q ss_pred EEEeCCceeeecceEEcCCCCCCCeeEEec
Q 005706 465 VTITSGSNIKMGDLVYEPPRDGPTLWEIGI 494 (682)
Q Consensus 465 VtV~aG~t~~lg~l~~~~~~~g~~LWeIGi 494 (682)
|.+..++...+ ++.+.+. ..+|-||.+
T Consensus 62 i~~~~~~~~~~-~i~L~~~--~~~L~eVvV 88 (88)
T PF13715_consen 62 ISVNSNKNTNL-NIYLEPK--SNQLDEVVV 88 (88)
T ss_pred EEecCCCEEEE-EEEEeeC--cccCCeEEC
Confidence 77766655556 5777553 567887753
No 7
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=97.94 E-value=3.3e-05 Score=85.13 Aligned_cols=78 Identities=19% Similarity=0.218 Sum_probs=63.3
Q ss_pred CeEEEEEEEeccCCCccccCeeEEEecCCCCCCCcccccccceeEEEeCCCCceEeCCccCceeEEEEEECceeeeeeee
Q 005706 383 RGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSD 462 (682)
Q Consensus 383 RGtVsG~v~~~D~~~~~pa~~a~V~L~~~~~~gs~q~~~k~yqYwt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~~ 462 (682)
...|+|+|..... ..|..+|+|.+. +....+.||.+|.|.+ .|+||+|+|+|+..|+. ..+
T Consensus 296 ~~gI~G~V~D~~~--g~pl~~AtV~V~-------------g~~~~~~Td~~G~f~~-~l~pG~ytl~vs~~GY~---~~~ 356 (375)
T cd03863 296 HRGVRGFVLDATD--GRGILNATISVA-------------DINHPVTTYKDGDYWR-LLVPGTYKVTASARGYD---PVT 356 (375)
T ss_pred cCeEEEEEEeCCC--CCCCCCeEEEEe-------------cCcCceEECCCccEEE-ccCCeeEEEEEEEcCcc---cEE
Confidence 5799999986532 258899999994 3455788999999999 69999999999998764 455
Q ss_pred eEEEEeCCceeeecceEE
Q 005706 463 ALVTITSGSNIKMGDLVY 480 (682)
Q Consensus 463 ~~VtV~aG~t~~lg~l~~ 480 (682)
.+|+|.+|+++.+ ++.+
T Consensus 357 ~~v~V~~~~~~~~-~~~L 373 (375)
T cd03863 357 KTVEVDSKGAVQV-NFTL 373 (375)
T ss_pred EEEEEcCCCcEEE-EEEe
Confidence 5799999999887 5766
No 8
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=97.87 E-value=4.6e-05 Score=84.48 Aligned_cols=101 Identities=14% Similarity=0.243 Sum_probs=74.3
Q ss_pred CCCCCcchhHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCeEEEEEEEeccCCCccccCeeEEEecCCCCCCCccccccc
Q 005706 344 ADGDDPLWLWEDAKIKMMSEVQSWPYNFPASEDFQKSEERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKD 423 (682)
Q Consensus 344 ~~~~~~~~l~~DA~~~~~~E~~~Wpy~f~~s~~y~~~~qRGtVsG~v~~~D~~~~~pa~~a~V~L~~~~~~gs~q~~~k~ 423 (682)
+..+....+|+|-|.-+.+ |... -...|+|+|+..++ .|..+|+|.+.+
T Consensus 291 p~~~~l~~~w~~n~~all~--------------~~~~-~~~gI~G~V~D~~g---~pi~~A~V~v~g------------- 339 (392)
T cd03864 291 PPEEELEREWLGNREALIS--------------YIEQ-VHQGIKGMVTDENN---NGIANAVISVSG------------- 339 (392)
T ss_pred CCHHHHHHHHHHHHHHHHH--------------HHHH-hcCeEEEEEECCCC---CccCCeEEEEEC-------------
Confidence 3334456688887665432 1110 12489999997765 489999999943
Q ss_pred ceeEEEeCCCCceEeCCccCceeEEEEEECceeeeeeeeeEEEEeCCceeeecceEE
Q 005706 424 YQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSDALVTITSGSNIKMGDLVY 480 (682)
Q Consensus 424 yqYwt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~~~~VtV~aG~t~~lg~l~~ 480 (682)
...-+.||++|.| +.+++||+|+|.+++.|+. .++.+|+|.+++++++ ++++
T Consensus 340 ~~~~~~T~~~G~y-~r~l~pG~Y~l~vs~~Gy~---~~t~~v~V~~~~~~~~-df~L 391 (392)
T cd03864 340 ISHDVTSGTLGDY-FRLLLPGTYTVTASAPGYQ---PSTVTVTVGPAEATLV-NFQL 391 (392)
T ss_pred CccceEECCCCcE-EecCCCeeEEEEEEEcCce---eEEEEEEEcCCCcEEE-eeEe
Confidence 4556889999999 9999999999999998765 5666799999887766 4654
No 9
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=97.86 E-value=3.7e-05 Score=85.36 Aligned_cols=98 Identities=21% Similarity=0.348 Sum_probs=73.4
Q ss_pred CCcchhHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCeEEEEEEEeccCCCccccCeeEEEecCCCCCCCccccccccee
Q 005706 347 DDPLWLWEDAKIKMMSEVQSWPYNFPASEDFQKSEERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQF 426 (682)
Q Consensus 347 ~~~~~l~~DA~~~~~~E~~~Wpy~f~~s~~y~~~~qRGtVsG~v~~~D~~~~~pa~~a~V~L~~~~~~gs~q~~~k~yqY 426 (682)
+....+|+|-|.-+. .|.....|| |+|+|+...| .|..+|.|.+.+ ...
T Consensus 304 ~~L~~~W~~n~~all--------------~~~~q~~~g-I~G~V~D~~g---~pI~~AtV~V~g-------------~~~ 352 (402)
T cd03865 304 ETLKQYWEDNKNSLV--------------NYIEQVHRG-VKGFVKDLQG---NPIANATISVEG-------------IDH 352 (402)
T ss_pred HHHHHHHHHHHHHHH--------------HHHHHhccc-eEEEEECCCC---CcCCCeEEEEEc-------------Ccc
Confidence 345668888776543 122223466 9999986544 488899999954 344
Q ss_pred EEEeCCCCceEeCCccCceeEEEEEECceeeeeeeeeEEEEeCCceeeecceEE
Q 005706 427 WTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSDALVTITSGSNIKMGDLVY 480 (682)
Q Consensus 427 wt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~~~~VtV~aG~t~~lg~l~~ 480 (682)
.+.||.+|.|.+ .++||+|+|+|.+.|+. .+...|+|..++++.+ ++++
T Consensus 353 ~~~T~~~G~Y~~-~L~pG~Ytv~vsa~Gy~---~~~~~V~V~~~~~~~v-df~L 401 (402)
T cd03865 353 DITSAKDGDYWR-LLAPGNYKLTASAPGYL---AVVKKVAVPYSPAVRV-DFEL 401 (402)
T ss_pred ccEECCCeeEEE-CCCCEEEEEEEEecCcc---cEEEEEEEcCCCcEEE-eEEe
Confidence 568999999998 89999999999998875 4456799999998877 4665
No 10
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=97.67 E-value=0.00017 Score=79.29 Aligned_cols=76 Identities=17% Similarity=0.256 Sum_probs=62.1
Q ss_pred CeEEEEEEEeccCCCccccCeeEEEecCCCCCCCcccccccceeEEEeCCCCceEeCCccCceeEEEEEECceeeeeeee
Q 005706 383 RGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSD 462 (682)
Q Consensus 383 RGtVsG~v~~~D~~~~~pa~~a~V~L~~~~~~gs~q~~~k~yqYwt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~~ 462 (682)
.-.|+|+|+..+| .|..+|+|.+.+ .. .+.||.+|.|.+. ++||+|+|.+...|+. ..+
T Consensus 286 ~~gI~G~V~d~~g---~pi~~A~V~v~g-------------~~-~~~T~~~G~y~~~-L~pG~y~v~vs~~Gy~---~~~ 344 (363)
T cd06245 286 HKGVHGVVTDKAG---KPISGATIVLNG-------------GH-RVYTKEGGYFHVL-LAPGQHNINVIAEGYQ---QEH 344 (363)
T ss_pred CcEEEEEEEcCCC---CCccceEEEEeC-------------CC-ceEeCCCcEEEEe-cCCceEEEEEEEeCce---eEE
Confidence 3579999997655 589999999954 22 5779999999997 9999999999998765 566
Q ss_pred eEEEEeCCceeeecceEE
Q 005706 463 ALVTITSGSNIKMGDLVY 480 (682)
Q Consensus 463 ~~VtV~aG~t~~lg~l~~ 480 (682)
.+|+|.+++++.+ ++++
T Consensus 345 ~~V~v~~~~~~~~-~f~L 361 (363)
T cd06245 345 LPVVVSHDEASSV-KIVL 361 (363)
T ss_pred EEEEEcCCCeEEE-EEEe
Confidence 6799999988777 5766
No 11
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=97.51 E-value=0.00028 Score=77.75 Aligned_cols=76 Identities=18% Similarity=0.189 Sum_probs=60.0
Q ss_pred CeEEEEEEEeccCCCccccCeeEEEecCCCCCCCcccccccceeEEEeCCCCceEeCCccCceeEEEEEECceeeeeee-
Q 005706 383 RGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRS- 461 (682)
Q Consensus 383 RGtVsG~v~~~D~~~~~pa~~a~V~L~~~~~~gs~q~~~k~yqYwt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~- 461 (682)
.+.|+|+|+..+| .|..+|.|.+.+ ....+.||++|.|.+ +++||+|+|.+...|+. .+
T Consensus 295 ~~~i~G~V~d~~g---~pv~~A~V~v~~-------------~~~~~~td~~G~y~~-~l~~G~Y~l~vs~~Gf~---~~~ 354 (372)
T cd03868 295 HIGVKGFVRDASG---NPIEDATIMVAG-------------IDHNVTTAKFGDYWR-LLLPGTYTITAVAPGYE---PST 354 (372)
T ss_pred CCceEEEEEcCCC---CcCCCcEEEEEe-------------cccceEeCCCceEEe-cCCCEEEEEEEEecCCC---ceE
Confidence 4789999987755 588999999954 345689999999984 79999999999998875 33
Q ss_pred eeEEEEeCCceeeecceE
Q 005706 462 DALVTITSGSNIKMGDLV 479 (682)
Q Consensus 462 ~~~VtV~aG~t~~lg~l~ 479 (682)
...|+|.+|+++.+ +++
T Consensus 355 ~~~v~v~~g~~~~~-~~~ 371 (372)
T cd03868 355 VTDVVVKEGEATSV-NFT 371 (372)
T ss_pred EeeEEEcCCCeEEE-eeE
Confidence 33477999998776 343
No 12
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=97.49 E-value=0.0004 Score=76.44 Aligned_cols=72 Identities=19% Similarity=0.268 Sum_probs=59.0
Q ss_pred eEEEEEEEeccCCCccccCeeEEEecCCCCCCCcccccccceeEEEeCCCCceEeCCccCceeEEEEEECceeeeeeeee
Q 005706 384 GCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSDA 463 (682)
Q Consensus 384 GtVsG~v~~~D~~~~~pa~~a~V~L~~~~~~gs~q~~~k~yqYwt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~~~ 463 (682)
.+|+|+|+..++ .|..+|.|.+. +....+.||.+|.|.+. ++||+|+|.+...|+. .++.
T Consensus 298 ~~i~G~V~d~~g---~pl~~A~V~i~-------------~~~~~~~Td~~G~f~~~-l~~G~y~l~vs~~Gy~---~~~~ 357 (374)
T cd03858 298 RGIKGFVRDANG---NPIANATISVE-------------GINHDVTTAEDGDYWRL-LLPGTYNVTASAPGYE---PQTK 357 (374)
T ss_pred CceEEEEECCCC---CccCCeEEEEe-------------cceeeeEECCCceEEEe-cCCEeEEEEEEEcCcc---eEEE
Confidence 489999997654 48889999994 46788999999999986 7999999999998764 4555
Q ss_pred EEEEeC-Cceeee
Q 005706 464 LVTITS-GSNIKM 475 (682)
Q Consensus 464 ~VtV~a-G~t~~l 475 (682)
+|+|.. |+++.+
T Consensus 358 ~v~v~~~g~~~~~ 370 (374)
T cd03858 358 SVVVPNDNSAVVV 370 (374)
T ss_pred EEEEecCCceEEE
Confidence 678877 887766
No 13
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=97.15 E-value=0.0014 Score=73.04 Aligned_cols=72 Identities=19% Similarity=0.240 Sum_probs=56.8
Q ss_pred eEEEEEEEeccCCCccccCeeEEEecCCCCCCCcccccccceeEEEeCCCCceEeCCccCceeEEEEEECceeeeeeeee
Q 005706 384 GCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSDA 463 (682)
Q Consensus 384 GtVsG~v~~~D~~~~~pa~~a~V~L~~~~~~gs~q~~~k~yqYwt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~~~ 463 (682)
-.|+|+|+..++ .|..+|.|.+. +....+.||++|.|. .+++||+|+|.+...|+. ....
T Consensus 318 ~~i~G~V~D~~g---~pi~~A~V~v~-------------g~~~~~~Td~~G~y~-~~l~~G~y~l~vs~~Gy~---~~~~ 377 (395)
T cd03867 318 RGIKGFVKDKDG---NPIKGARISVR-------------GIRHDITTAEDGDYW-RLLPPGIHIVSAQAPGYT---KVMK 377 (395)
T ss_pred ceeEEEEEcCCC---CccCCeEEEEe-------------ccccceEECCCceEE-EecCCCcEEEEEEecCee---eEEE
Confidence 369999997655 58999999994 466778999999997 689999999999998764 4556
Q ss_pred EEEEeC--Cceeee
Q 005706 464 LVTITS--GSNIKM 475 (682)
Q Consensus 464 ~VtV~a--G~t~~l 475 (682)
+|+|.. ++...+
T Consensus 378 ~v~v~~~~~~~~~~ 391 (395)
T cd03867 378 RVTLPARMKRAGRV 391 (395)
T ss_pred EEEeCCcCCCceEe
Confidence 688865 444444
No 14
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=96.40 E-value=0.011 Score=65.57 Aligned_cols=70 Identities=17% Similarity=0.176 Sum_probs=52.8
Q ss_pred CeEEEEEEEeccCCCccccCeeEEEecCCCCCCCcccccccceeEEEeCCCCceEeCCccCceeEEEEEECceeeeeeee
Q 005706 383 RGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSD 462 (682)
Q Consensus 383 RGtVsG~v~~~D~~~~~pa~~a~V~L~~~~~~gs~q~~~k~yqYwt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~~ 462 (682)
.+.|+|+|+..+| .|..+|.|.+.+. +...-+.||++|.|.+. ++||+|+|.+.++|+. ...
T Consensus 294 ~~gI~G~V~D~~g---~pi~~A~V~v~g~-----------~~~~~~~T~~~G~y~~~-l~pG~Y~v~vsa~Gy~---~~~ 355 (376)
T cd03866 294 HLGVKGQVFDSNG---NPIPNAIVEVKGR-----------KHICPYRTNVNGEYFLL-LLPGKYMINVTAPGFK---TVI 355 (376)
T ss_pred cCceEEEEECCCC---CccCCeEEEEEcC-----------CceeEEEECCCceEEEe-cCCeeEEEEEEeCCcc---eEE
Confidence 5679999986544 5889999999541 22233469999999774 9999999999998875 445
Q ss_pred eEEEEeCC
Q 005706 463 ALVTITSG 470 (682)
Q Consensus 463 ~~VtV~aG 470 (682)
.+|.|.+.
T Consensus 356 ~~v~v~~~ 363 (376)
T cd03866 356 TNVIIPYN 363 (376)
T ss_pred EEEEeCCC
Confidence 56777754
No 15
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=95.47 E-value=0.036 Score=53.21 Aligned_cols=65 Identities=20% Similarity=0.254 Sum_probs=48.2
Q ss_pred CCeEEEEEEEeccCCCccccCeeEEEecCCCCCCCcccccccceeEEEeCCCCceEe---CC-ccCceeEEEEEECc
Q 005706 382 ERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSI---KN-IRTGNYNLYAWVPG 454 (682)
Q Consensus 382 qRGtVsG~v~~~D~~~~~pa~~a~V~L~~~~~~gs~q~~~k~yqYwt~td~~G~FtI---~n-VrpGtY~L~a~~~G 454 (682)
+.+.|+++|+....+ +||.++.|-|.... .+.|+ .-.-+.||++|+|.. .+ +.||.|+|.....+
T Consensus 25 ~~~~Is~HVLDt~~G--~PA~gV~V~L~~~~-~~~w~-----~l~~~~Td~dGR~~~l~~~~~~~~G~Y~L~F~t~~ 93 (137)
T PRK15036 25 QQNILSVHILNQQTG--KPAADVTVTLEKKA-DNGWL-----QLNTAKTDKDGRIKALWPEQTATTGDYRVVFKTGD 93 (137)
T ss_pred cCCCeEEEEEeCCCC--cCCCCCEEEEEEcc-CCceE-----EEEEEEECCCCCCccccCcccCCCeeEEEEEEcch
Confidence 446799999865532 69999999997532 22344 235578999999986 34 88999999998644
No 16
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=95.42 E-value=0.082 Score=50.60 Aligned_cols=78 Identities=19% Similarity=0.139 Sum_probs=55.9
Q ss_pred EEEEEEEeccCCCccccCeeEEEecCCCCCCCcccccccceeEEEeCCCCceEeCCccCceeEEEEEECceeeeeeeeeE
Q 005706 385 CVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSDAL 464 (682)
Q Consensus 385 tVsG~v~~~D~~~~~pa~~a~V~L~~~~~~gs~q~~~k~yqYwt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~~~~ 464 (682)
.|||.++...|+ |..+..+.|..-... .+-=.+.-=+..|+++|.|+|+ +.||.|.++++..|.. ..+-..
T Consensus 4 ~ISGvL~dg~G~---pv~g~~I~L~A~~tS---~~Vv~~t~as~~t~~~G~Ys~~-~epG~Y~V~l~~~g~~--~~~vG~ 74 (134)
T PF08400_consen 4 KISGVLKDGAGK---PVPGCTITLKARRTS---STVVVGTVASVVTGEAGEYSFD-VEPGVYRVTLKVEGRP--PVYVGD 74 (134)
T ss_pred EEEEEEeCCCCC---cCCCCEEEEEEccCc---hheEEEEEEEEEcCCCceEEEE-ecCCeEEEEEEECCCC--ceeEEE
Confidence 689999977774 899999999742110 0001245567789999999995 9999999999998864 233345
Q ss_pred EEEeCCc
Q 005706 465 VTITSGS 471 (682)
Q Consensus 465 VtV~aG~ 471 (682)
|+|.+.+
T Consensus 75 I~V~~dS 81 (134)
T PF08400_consen 75 ITVYEDS 81 (134)
T ss_pred EEEecCC
Confidence 7887544
No 17
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=94.82 E-value=0.15 Score=42.64 Aligned_cols=45 Identities=20% Similarity=0.411 Sum_probs=36.5
Q ss_pred CceEeCCccCceeEEEEEECceeeeeeeeeEEEEeCCceeeecceEEcC
Q 005706 434 GCFSIKNIRTGNYNLYAWVPGFVGDYRSDALVTITSGSNIKMGDLVYEP 482 (682)
Q Consensus 434 G~FtI~nVrpGtY~L~a~~~G~~G~~~~~~~VtV~aG~t~~lg~l~~~~ 482 (682)
...++..+++|.|+|.+..+|+. ..+..|.|.+|++..+ ++.+++
T Consensus 25 tp~~~~~l~~G~~~v~v~~~Gy~---~~~~~v~v~~~~~~~v-~~~L~~ 69 (71)
T PF08308_consen 25 TPLTLKDLPPGEHTVTVEKPGYE---PYTKTVTVKPGETTTV-NVTLEP 69 (71)
T ss_pred CcceeeecCCccEEEEEEECCCe---eEEEEEEECCCCEEEE-EEEEEE
Confidence 34578889999999999998865 5567799999999888 477643
No 18
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=93.53 E-value=0.57 Score=42.91 Aligned_cols=80 Identities=18% Similarity=0.334 Sum_probs=50.3
Q ss_pred CCcEEEEEEEeccCC-CeEEEEEcCCCCCCCcccccccCCCCceecceeeeeeEEEEEEeeCCCeeeeecEEEEEeecCC
Q 005706 585 NSSYKLRVAIASATL-AELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLKQPRCT 663 (682)
Q Consensus 585 ~~~~tLriala~a~~-~~~~V~vN~~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~NtI~lt~~~gs 663 (682)
.+.|+|++..|.... ++++|+||+... ++..+..++...+ .-.|...+..| .|.+|.|+|+|....+.
T Consensus 44 ~g~y~~~~~~a~~~~~~~~~l~id~~~g--~~~~~~~~~~tg~------w~~~~~~~~~v---~l~~G~h~i~l~~~~~~ 112 (125)
T PF03422_consen 44 AGTYTLTIRYANGGGGGTIELRIDGPDG--TLIGTVSLPPTGG------WDTWQTVSVSV---KLPAGKHTIYLVFNGGD 112 (125)
T ss_dssp SEEEEEEEEEEESSSSEEEEEEETTTTS--EEEEEEEEE-ESS------TTEEEEEEEEE---EEESEEEEEEEEESSSS
T ss_pred CceEEEEEEEECCCCCcEEEEEECCCCC--cEEEEEEEcCCCC------ccccEEEEEEE---eeCCCeeEEEEEEECCC
Confidence 578899988888764 799999999322 1222222221110 11234444555 46679999999987654
Q ss_pred CCCceEEEEEEEEe
Q 005706 664 SPFQGIMYDYIRLE 677 (682)
Q Consensus 664 s~f~~vmyD~IrLe 677 (682)
+ ..+-.|+|+|+
T Consensus 113 ~--~~~niD~~~f~ 124 (125)
T PF03422_consen 113 G--WAFNIDYFQFT 124 (125)
T ss_dssp S--B-EEEEEEEEE
T ss_pred C--ceEEeEEEEEE
Confidence 3 35889999886
No 19
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=93.53 E-value=0.22 Score=48.04 Aligned_cols=64 Identities=20% Similarity=0.301 Sum_probs=46.3
Q ss_pred CCeEEEEEEEeccCCCccccCeeEEEecCCCCCCCcccccc-------cceeEEEeCCCCceEeCCccCceeEE
Q 005706 382 ERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECK-------DYQFWTTADEDGCFSIKNIRTGNYNL 448 (682)
Q Consensus 382 qRGtVsG~v~~~D~~~~~pa~~a~V~L~~~~~~gs~q~~~k-------~yqYwt~td~~G~FtI~nVrpGtY~L 448 (682)
+.-+|.|+|+..++. |..+|.|-+-.....|....+.. ...-...||++|.|+|.-|+||.|.+
T Consensus 10 ~~l~l~G~V~D~~g~---pv~~A~VeiW~~d~~G~Y~~~~~~~~~~~~~~rg~~~Td~~G~y~f~ti~Pg~Y~~ 80 (146)
T cd00421 10 EPLTLTGTVLDGDGC---PVPDALVEIWQADADGRYSGQDDSGLDPEFFLRGRQITDADGRYRFRTIKPGPYPI 80 (146)
T ss_pred CEEEEEEEEECCCCC---CCCCcEEEEEecCCCCccCCcCccccCCCCCCEEEEEECCCcCEEEEEEcCCCCCC
Confidence 456999999988774 77789998865555453332211 22334789999999999999999994
No 20
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Proteins belonging to this subgroup include CP-like protein X1 (CPX1), CP-like protein X2 (CPX2), and aortic CP-like protein (ACLP) and its isoform adipocyte enhancer binding protein-1 (AEBP1). AEBP1 is a truncated form of ACLP, which may arise from alternative splicing of the gene. These proteins are inactive towards standard CP substrates because they lack one or more critical active site and substrate-binding residues that are necessary for activity. They may function as binding proteins rather than as active CPs or display catalytic activity toward other substrates. Pro
Probab=93.50 E-value=0.18 Score=56.50 Aligned_cols=68 Identities=16% Similarity=0.241 Sum_probs=50.8
Q ss_pred CCeEEEEEEEeccCCCccccCeeEEEecCCCCCCCcccccccceeEEEeCCCCceEeCCccCceeEEEEEECceeeeeee
Q 005706 382 ERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRS 461 (682)
Q Consensus 382 qRGtVsG~v~~~D~~~~~pa~~a~V~L~~~~~~gs~q~~~k~yqYwt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~ 461 (682)
.|| |+|.|+...| .|..+|+|.+.+ ......|.++|.|-- =+.||+|+++|.++|+. ..
T Consensus 328 h~G-ikG~V~d~~g---~~i~~a~i~v~g-------------~~~~v~t~~~GdywR-ll~pG~y~v~~~a~gy~---~~ 386 (405)
T cd03869 328 HRG-IKGVVRDKTG---KGIPNAIISVEG-------------INHDIRTASDGDYWR-LLNPGEYRVTAHAEGYT---SS 386 (405)
T ss_pred hcC-ceEEEECCCC---CcCCCcEEEEec-------------CccceeeCCCCceEE-ecCCceEEEEEEecCCC---cc
Confidence 354 9999986655 488899999953 445566788897754 38999999999998864 55
Q ss_pred eeEEEEeCC
Q 005706 462 DALVTITSG 470 (682)
Q Consensus 462 ~~~VtV~aG 470 (682)
..+|+|..+
T Consensus 387 ~~~~~v~~~ 395 (405)
T cd03869 387 TKNCEVGYE 395 (405)
T ss_pred cEEEEEcCC
Confidence 566777754
No 21
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=92.42 E-value=0.38 Score=57.61 Aligned_cols=55 Identities=24% Similarity=0.326 Sum_probs=44.7
Q ss_pred eEEEEEEEeccCCCccccCeeEEEecCCCCCCCcccccccceeEEEeCCCCceEeCC-ccCceeEEEEEECc
Q 005706 384 GCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKN-IRTGNYNLYAWVPG 454 (682)
Q Consensus 384 GtVsG~v~~~D~~~~~pa~~a~V~L~~~~~~gs~q~~~k~yqYwt~td~~G~FtI~n-VrpGtY~L~a~~~G 454 (682)
-+|+|||++..+. .|..++.|.+. -+--.+||++|+|+++| +..|+|++.|-...
T Consensus 316 fSvtGRVl~g~~g--~~l~gvvvlvn--------------gk~~~kTdaqGyykLen~~t~gtytI~a~keh 371 (1165)
T KOG1948|consen 316 FSVTGRVLVGSKG--LPLSGVVVLVN--------------GKSGGKTDAQGYYKLENLKTDGTYTITAKKEH 371 (1165)
T ss_pred EEeeeeEEeCCCC--CCccceEEEEc--------------CcccceEcccceEEeeeeeccCcEEEEEeccc
Confidence 4899998876422 68899999884 34556899999999999 99999999997644
No 22
>PF09430 DUF2012: Protein of unknown function (DUF2012); InterPro: IPR019008 This domain is found in different proteins, including uncharacterised protein family UPF0480 and nodal modulators. A nodal modulator has been identified as part of a protein complex that participates in the nodal signaling pathway during vertebrate development [].
Probab=92.40 E-value=0.54 Score=44.12 Aligned_cols=40 Identities=25% Similarity=0.471 Sum_probs=31.4
Q ss_pred eEEEeCCCCceEeCCccCceeEEEEEECceeeeeeeeeEEEEe
Q 005706 426 FWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSDALVTIT 468 (682)
Q Consensus 426 Ywt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~~~~VtV~ 468 (682)
+-+...++|.|.|.||++|+|.|.+-...+. |. .-.|.|.
T Consensus 22 ~~~~v~~dG~F~f~~Vp~GsY~L~V~s~~~~--F~-~~RVdV~ 61 (123)
T PF09430_consen 22 ISAFVRSDGSFVFHNVPPGSYLLEVHSPDYV--FP-PYRVDVS 61 (123)
T ss_pred eEEEecCCCEEEeCCCCCceEEEEEECCCcc--cc-CEEEEEe
Confidence 3778899999999999999999999876543 22 2346676
No 23
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=91.97 E-value=0.64 Score=38.43 Aligned_cols=43 Identities=30% Similarity=0.492 Sum_probs=31.5
Q ss_pred EEeCCCCceEeCCccCceeEEEEEE--Cceeeeeee--eeEEEEeCCcee
Q 005706 428 TTADEDGCFSIKNIRTGNYNLYAWV--PGFVGDYRS--DALVTITSGSNI 473 (682)
Q Consensus 428 t~td~~G~FtI~nVrpGtY~L~a~~--~G~~G~~~~--~~~VtV~aG~t~ 473 (682)
..+|++|.|.|++++||+|.|.--. .|+. .. ...++|..++..
T Consensus 21 ~~Td~~G~~~f~~L~~G~Y~l~E~~aP~GY~---~~~~~~~~~i~~~~~~ 67 (70)
T PF05738_consen 21 VTTDENGKYTFKNLPPGTYTLKETKAPDGYQ---LDDTPYEFTITEDGDV 67 (70)
T ss_dssp EEGGTTSEEEEEEEESEEEEEEEEETTTTEE---EEECEEEEEECTTSCE
T ss_pred EEECCCCEEEEeecCCeEEEEEEEECCCCCE---ECCCceEEEEecCCEE
Confidence 5689999999999999999999876 4432 22 233666665543
No 24
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.03 E-value=0.6 Score=48.54 Aligned_cols=65 Identities=25% Similarity=0.331 Sum_probs=47.4
Q ss_pred CCeEEEEEEEeccCCCccccCeeEEEecCCCCCCCcccccccce-------eE--EEeCCCCceEeCCccCceeEEE
Q 005706 382 ERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQ-------FW--TTADEDGCFSIKNIRTGNYNLY 449 (682)
Q Consensus 382 qRGtVsG~v~~~D~~~~~pa~~a~V~L~~~~~~gs~q~~~k~yq-------Yw--t~td~~G~FtI~nVrpGtY~L~ 449 (682)
+|=.|+|+|+..+|+ |..+|.|=+-+....|-.....+.+. =| +.||++|.|.|.-|+||.|--.
T Consensus 71 e~i~l~G~VlD~~G~---Pv~~A~VEiWQAda~GrY~~~~d~~~~~~~~f~g~Gr~~Td~~G~y~F~Ti~Pg~yp~~ 144 (226)
T COG3485 71 ERILLEGRVLDGNGR---PVPDALVEIWQADADGRYSHPKDSRLAPLPNFNGRGRTITDEDGEYRFRTIKPGPYPWR 144 (226)
T ss_pred ceEEEEEEEECCCCC---CCCCCEEEEEEcCCCCcccCccccccCcCccccceEEEEeCCCceEEEEEeecccccCC
Confidence 789999999988874 99999998855555554432112121 23 5689999999999999998543
No 25
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=89.97 E-value=3 Score=36.97 Aligned_cols=62 Identities=23% Similarity=0.375 Sum_probs=46.4
Q ss_pred CCeEEEEEEEeccCCCccccCeeEEEecCCCCCCCcccccccceeEEEeCCCCceEeCCccCceeEEEEEECceee
Q 005706 382 ERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVG 457 (682)
Q Consensus 382 qRGtVsG~v~~~D~~~~~pa~~a~V~L~~~~~~gs~q~~~k~yqYwt~td~~G~FtI~nVrpGtY~L~a~~~G~~G 457 (682)
....|+|+|+ .+|+ |..+++|-|-++... .-=-..++++|.|.+- ..||+.+|.+...+-.|
T Consensus 6 ke~VItG~V~-~~G~---Pv~gAyVRLLD~sgE---------FtaEvvts~~G~FRFf-aapG~WtvRal~~~g~~ 67 (85)
T PF07210_consen 6 KETVITGRVT-RDGE---PVGGAYVRLLDSSGE---------FTAEVVTSATGDFRFF-AAPGSWTVRALSRGGNG 67 (85)
T ss_pred ceEEEEEEEe-cCCc---CCCCeEEEEEcCCCC---------eEEEEEecCCccEEEE-eCCCceEEEEEccCCCC
Confidence 3578999999 6664 999999999753211 1122457899999995 89999999999876444
No 26
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=89.47 E-value=0.75 Score=46.41 Aligned_cols=64 Identities=20% Similarity=0.369 Sum_probs=47.4
Q ss_pred CCCeEEEEEEEeccCCCccccCeeEEEecCCCCCCCccccc-------ccceeE--EEeCCCCceEeCCccCceeE
Q 005706 381 EERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTEC-------KDYQFW--TTADEDGCFSIKNIRTGNYN 447 (682)
Q Consensus 381 ~qRGtVsG~v~~~D~~~~~pa~~a~V~L~~~~~~gs~q~~~-------k~yqYw--t~td~~G~FtI~nVrpGtY~ 447 (682)
...=.|+|+|...++ +|..+|.|-+-.....|....+. .+++.| ..||++|+|++.-|+||-|.
T Consensus 34 G~~l~l~G~V~D~~g---~Pi~gA~VeiWqad~~G~Y~~~~~~~~~~~~~f~~rGr~~TD~~G~y~F~Ti~Pg~Y~ 106 (185)
T cd03463 34 GERITLEGRVYDGDG---APVPDAMLEIWQADAAGRYAHPADSRRRLDPGFRGFGRVATDADGRFSFTTVKPGAVP 106 (185)
T ss_pred CCEEEEEEEEECCCC---CCCCCCEEEEEcCCCCCccCCcCCcccccCCCCCcEEEEEECCCCCEEEEEEcCCCcC
Confidence 346789999997666 59999999986655555443221 244445 56899999999999999986
No 27
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=88.59 E-value=0.96 Score=44.50 Aligned_cols=64 Identities=23% Similarity=0.418 Sum_probs=47.3
Q ss_pred CCeEEEEEEEeccCCCccccCeeEEEecCCCCCCCccccc--------ccceeE--EEeCCCCceEeCCccCceeEE
Q 005706 382 ERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTEC--------KDYQFW--TTADEDGCFSIKNIRTGNYNL 448 (682)
Q Consensus 382 qRGtVsG~v~~~D~~~~~pa~~a~V~L~~~~~~gs~q~~~--------k~yqYw--t~td~~G~FtI~nVrpGtY~L 448 (682)
++=.|+|+|...++ .|..+|.|-+-.....|.+..+. .++..| ..||++|.|+|.-|+||-|.+
T Consensus 14 ~~l~l~g~V~D~~g---~Pv~~A~veiWqad~~G~Y~~~~~~~~~~~~~~f~~rG~~~Td~~G~~~f~Ti~Pg~Y~~ 87 (158)
T cd03459 14 ERIILEGRVLDGDG---RPVPDALVEIWQADAAGRYRHPRDSHRAPLDPNFTGFGRVLTDADGRYRFRTIKPGAYPW 87 (158)
T ss_pred cEEEEEEEEECCCC---CCCCCCEEEEEccCCCCccCCccCCcccccCCCCCceeEEEECCCCcEEEEEECCCCcCC
Confidence 45689999987666 59999999986655555443322 244544 468999999999999999984
No 28
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups. This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
Probab=88.51 E-value=1.3 Score=46.64 Aligned_cols=64 Identities=14% Similarity=0.180 Sum_probs=45.1
Q ss_pred CCCeEEEEEEEeccCCCccccCeeEEEecCCCCCCCccccc---cccee--EEEeCCCCceEeCCccCceeE
Q 005706 381 EERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTEC---KDYQF--WTTADEDGCFSIKNIRTGNYN 447 (682)
Q Consensus 381 ~qRGtVsG~v~~~D~~~~~pa~~a~V~L~~~~~~gs~q~~~---k~yqY--wt~td~~G~FtI~nVrpGtY~ 447 (682)
.++=.|+|+|...+| .|..+|.|=+-.....|.+..+. ....+ ...||++|.|.+.-|+||-|-
T Consensus 97 G~~l~l~G~V~D~~G---~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~RG~~~Td~~G~y~F~Ti~P~~Yp 165 (247)
T cd03462 97 HKPLLFRGTVKDLAG---APVAGAVIDVWHSTPDGKYSGFHPNIPEDYYRGKIRTDEDGRYEVRTTVPVPYQ 165 (247)
T ss_pred CCEEEEEEEEEcCCC---CCcCCcEEEEECCCCCCCcCCCCCCCCCCCCEEEEEeCCCCCEEEEEECCCCcC
Confidence 356789999997776 49999999985544445332211 11111 457899999999999999994
No 29
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=88.19 E-value=0.76 Score=48.36 Aligned_cols=64 Identities=13% Similarity=0.189 Sum_probs=46.5
Q ss_pred CCeEEEEEEEeccCCCccccCeeEEEecCCCCCCCccccc---cccee--EEEeCCCCceEeCCccCceeEE
Q 005706 382 ERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTEC---KDYQF--WTTADEDGCFSIKNIRTGNYNL 448 (682)
Q Consensus 382 qRGtVsG~v~~~D~~~~~pa~~a~V~L~~~~~~gs~q~~~---k~yqY--wt~td~~G~FtI~nVrpGtY~L 448 (682)
+.=.|+|+|...+| .|..+|.|=+-....+|.+..+. ...++ +..||++|+|.|.-|+||-|-+
T Consensus 97 ~~l~v~G~V~D~~G---~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td~~G~y~F~Ti~P~~Ypi 165 (246)
T TIGR02465 97 KPLLIRGTVRDLSG---TPVAGAVIDVWHSTPDGKYSGFHDNIPDDYYRGKLVTAADGSYEVRTTMPVPYQI 165 (246)
T ss_pred cEEEEEEEEEcCCC---CCcCCcEEEEECCCCCCCCCCCCCCCCCCCCeEEEEECCCCCEEEEEECCCCCCC
Confidence 45789999997766 49999999986555555333211 12233 5778999999999999998853
No 30
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=87.98 E-value=0.74 Score=37.55 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=21.6
Q ss_pred EEEeCCCC-ceEeCCccCceeEEEEEEC
Q 005706 427 WTTADEDG-CFSIKNIRTGNYNLYAWVP 453 (682)
Q Consensus 427 wt~td~~G-~FtI~nVrpGtY~L~a~~~ 453 (682)
|....... .+++.+++||+|+|.|.+.
T Consensus 21 W~~~~~~~~~~~~~~L~~G~Y~l~V~a~ 48 (66)
T PF07495_consen 21 WITLGSYSNSISYTNLPPGKYTLEVRAK 48 (66)
T ss_dssp EEEESSTS-EEEEES--SEEEEEEEEEE
T ss_pred EEECCCCcEEEEEEeCCCEEEEEEEEEE
Confidence 76777777 9999999999999999973
No 31
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=86.39 E-value=1.7 Score=52.37 Aligned_cols=58 Identities=26% Similarity=0.386 Sum_probs=43.8
Q ss_pred eEEEEEEEeccCCCccccCeeEEEecCCCCCCCcccccccceeEEEeCCCCceEeCCccCceeEEEEEECc
Q 005706 384 GCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPG 454 (682)
Q Consensus 384 GtVsG~v~~~D~~~~~pa~~a~V~L~~~~~~gs~q~~~k~yqYwt~td~~G~FtI~nVrpGtY~L~a~~~G 454 (682)
=+|+|+|....+. .+.++.|-|-.. .+.---|.|+++|.|.+.||.||+|.+.+..+-
T Consensus 119 Fsv~GkVlgaagg---GpagV~velrs~----------e~~iast~T~~~Gky~f~~iiPG~Yev~ashp~ 176 (1165)
T KOG1948|consen 119 FSVRGKVLGAAGG---GPAGVLVELRSQ----------EDPIASTKTEDGGKYEFRNIIPGKYEVSASHPA 176 (1165)
T ss_pred eeEeeEEeeccCC---Ccccceeecccc----------cCcceeeEecCCCeEEEEecCCCceEEeccCcc
Confidence 3677777766542 456788887542 234456889999999999999999999998654
No 32
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=85.90 E-value=1.4 Score=45.64 Aligned_cols=65 Identities=25% Similarity=0.419 Sum_probs=46.4
Q ss_pred CCCeEEEEEEEeccCCCccccCeeEEEecCCCCCCCcccc--------cccceeE--EEeCCCCceEeCCccCceeEE
Q 005706 381 EERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTE--------CKDYQFW--TTADEDGCFSIKNIRTGNYNL 448 (682)
Q Consensus 381 ~qRGtVsG~v~~~D~~~~~pa~~a~V~L~~~~~~gs~q~~--------~k~yqYw--t~td~~G~FtI~nVrpGtY~L 448 (682)
.++=.|+|+|...+| .|..+|.|=+-.....|-+..+ ..+++.+ ..||++|.|.|.-|+||-|.+
T Consensus 63 G~~i~l~G~V~D~~G---~PV~~A~VEIWQad~~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~TI~Pg~Yp~ 137 (220)
T cd03464 63 GERIIVHGRVLDEDG---RPVPNTLVEIWQANAAGRYRHKRDQHDAPLDPNFGGAGRTLTDDDGYYRFRTIKPGAYPW 137 (220)
T ss_pred CCEEEEEEEEECCCC---CCCCCCEEEEEecCCCCcccCccCCcccccCCCCCCEEEEEECCCccEEEEEECCCCccC
Confidence 456789999997666 5999999998655444533321 1233333 468999999999999999954
No 33
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases. Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....
Probab=85.70 E-value=1.9 Score=43.38 Aligned_cols=64 Identities=23% Similarity=0.370 Sum_probs=39.5
Q ss_pred CCeEEEEEEEeccCCCccccCeeEEEecCCCCCCCccccc-------ccceeEEEeCCCCceEeCCccCceeEE
Q 005706 382 ERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTEC-------KDYQFWTTADEDGCFSIKNIRTGNYNL 448 (682)
Q Consensus 382 qRGtVsG~v~~~D~~~~~pa~~a~V~L~~~~~~gs~q~~~-------k~yqYwt~td~~G~FtI~nVrpGtY~L 448 (682)
+.=.|.|+|...++ .|..+|.|=+-.....|....+. ....=+..||++|.|++.-|+||.|.+
T Consensus 28 ~~l~l~G~V~D~~g---~Pv~~A~veiWqada~G~Ys~~~~~~~~~~~~~rG~~~Td~~G~y~f~Ti~Pg~Y~~ 98 (183)
T PF00775_consen 28 EPLVLHGRVIDTDG---KPVPGALVEIWQADADGRYSGQDPGSDQPDFNLRGRFRTDADGRYSFRTIKPGPYPI 98 (183)
T ss_dssp -EEEEEEEEEETTS---SB-TTEEEEEEE--TTS--TTTBTTSSSSTTTTEEEEEECTTSEEEEEEE----EEE
T ss_pred CEEEEEEEEECCCC---CCCCCcEEEEEecCCCCccccccccccccCCCcceEEecCCCCEEEEEeeCCCCCCC
Confidence 45689999998776 49999999886544445332211 123334678999999999999999975
No 34
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity []. Nucleotide sequence analysis showed the cellulose synthase operon to consist of 4 genes, designated bcsA, bcsB, bcsC and bcsD, all of which are required for maximal bacterial cellulose synthesis in A. xylinum. The calculated molecular mass of the protein encoded by bcsB is 85.3kDa []. BcsB encodes the catalytic subunit of cellulose synthase. The protein polymerises uridine 5'-diphosphate glucose to cellulose: UDP-glucose + (1,4-beta-D-glucosyl)(N) = UDP + (1,4-beta-D-glucosyl)(N+1). The enzyme is specifically activated by the nucleotide cyclic diguanylic acid. Sequence analysis suggests that BcsB contains several transmembrane (TM) domains, and shares a high degree of similarity with Escherichia coli YhjN.; GO: 0006011 UDP-glucose metabolic process, 0016020 membrane
Probab=85.60 E-value=2.2 Score=50.11 Aligned_cols=78 Identities=15% Similarity=0.140 Sum_probs=56.4
Q ss_pred ccEEEEEEeCCCCCCCcEEEEEEEeccC-----CCeEEEEEcCCCCCCCcccccccCCCCceecceeeeeeEEEEEEeeC
Q 005706 571 TTWQIKFKLDHVDRNSSYKLRVAIASAT-----LAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPG 645 (682)
Q Consensus 571 ~~w~I~F~L~~~~~~~~~tLriala~a~-----~~~~~V~vN~~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa 645 (682)
..-.|.|.+...+....++|+|.+.-+. .+.++|.|||.... +..+...+. .....+|+||.
T Consensus 29 ~~~~~~f~v~~~~~v~~a~L~L~~~~S~~l~~~~S~L~V~lNg~~v~-----s~~l~~~~~--------~~~~~~i~Ip~ 95 (605)
T PF03170_consen 29 ASRTIYFPVPADWVVTKATLNLSYTYSPSLLPERSQLTVSLNGQPVG-----SIPLDAESA--------QPQTVTIPIPP 95 (605)
T ss_pred CceEEEEEcCCCccccceEEEEEEEECcccCCCcceEEEEECCEEeE-----EEecCcCCC--------CceEEEEecCh
Confidence 4567788887776556778888877652 36899999998554 222332222 24678999999
Q ss_pred CCeeeeecEEEEEeecC
Q 005706 646 TRFIEGENTIFLKQPRC 662 (682)
Q Consensus 646 ~~L~~G~NtI~lt~~~g 662 (682)
. |..|.|.|+|.....
T Consensus 96 ~-l~~g~N~l~~~~~~~ 111 (605)
T PF03170_consen 96 A-LIKGFNRLTFEFIGH 111 (605)
T ss_pred h-hcCCceEEEEEEEec
Confidence 9 999999999987543
No 35
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=85.21 E-value=2.6 Score=44.71 Aligned_cols=65 Identities=23% Similarity=0.350 Sum_probs=46.4
Q ss_pred CCCeEEEEEEEeccCCCccccCeeEEEecCCCCCCCcccc---cccceeE--EEeCCCCceEeCCccCceeEE
Q 005706 381 EERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTE---CKDYQFW--TTADEDGCFSIKNIRTGNYNL 448 (682)
Q Consensus 381 ~qRGtVsG~v~~~D~~~~~pa~~a~V~L~~~~~~gs~q~~---~k~yqYw--t~td~~G~FtI~nVrpGtY~L 448 (682)
.++=.|+|+|...+|+ |..+|.|=+-.....|.+..+ ......+ ..||++|.|.+.-|+||-|-+
T Consensus 102 G~~l~l~G~V~D~~G~---Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td~~G~y~f~Ti~P~~Ypi 171 (256)
T cd03458 102 GEPLFVHGTVTDTDGK---PLAGATVDVWHADPDGFYSQQDPDQPEFNLRGKFRTDEDGRYRFRTIRPVPYPI 171 (256)
T ss_pred CcEEEEEEEEEcCCCC---CCCCcEEEEEccCCCCCcCCCCCCCCCCCCEEEEEeCCCCCEEEEEECCCCccC
Confidence 4567899999977774 888999988555455533321 1223333 568999999999999999954
No 36
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=84.78 E-value=1.9 Score=43.80 Aligned_cols=65 Identities=23% Similarity=0.422 Sum_probs=46.7
Q ss_pred CCCeEEEEEEEeccCCCccccCeeEEEecCCCCCCCccccc--------ccceeE--EEeCCCCceEeCCccCceeEE
Q 005706 381 EERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTEC--------KDYQFW--TTADEDGCFSIKNIRTGNYNL 448 (682)
Q Consensus 381 ~qRGtVsG~v~~~D~~~~~pa~~a~V~L~~~~~~gs~q~~~--------k~yqYw--t~td~~G~FtI~nVrpGtY~L 448 (682)
.++=.|+|+|+..++ .|..+|.|=+-.....|-...+. .+++-| ..||++|+|++.-|+||.|..
T Consensus 37 G~~l~l~G~V~D~~g---~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~~~f~grGr~~Td~~G~y~f~TI~Pg~Yp~ 111 (193)
T TIGR02423 37 GERIRLEGRVLDGDG---HPVPDALIEIWQADAAGRYNSPADLRAPATDPGFRGWGRTGTDESGEFTFETVKPGAVPD 111 (193)
T ss_pred CCEEEEEEEEECCCC---CCCCCCEEEEEccCCCCccCCccCCcccccCCCCCCeEEEEECCCCCEEEEEEcCCCcCC
Confidence 356789999996665 59999999996555555333211 134444 458999999999999998864
No 37
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase. Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family.
Probab=83.20 E-value=2.6 Score=39.24 Aligned_cols=58 Identities=21% Similarity=0.192 Sum_probs=39.9
Q ss_pred EEEEEEecc-CCCccccCeeEEEecCCCCCCCcccccccceeEEEeCCCCceE-----eCCccCceeEEEEEE
Q 005706 386 VSGRLLVQD-SNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFS-----IKNIRTGNYNLYAWV 452 (682)
Q Consensus 386 VsG~v~~~D-~~~~~pa~~a~V~L~~~~~~gs~q~~~k~yqYwt~td~~G~Ft-----I~nVrpGtY~L~a~~ 452 (682)
|+=+|+... | +||.++.|.|..... +.|+ .-.-+.||++|+.. ...+.||.|+|..-.
T Consensus 3 lstHVLDt~~G---~PAagv~V~L~~~~~-~~~~-----~i~~~~Tn~DGR~~~~l~~~~~~~~G~Y~l~F~~ 66 (112)
T TIGR02962 3 LSTHVLDTTSG---KPAAGVPVTLYRLDG-SGWT-----PLAEGVTNADGRCPDLLPEGETLAAGIYKLRFDT 66 (112)
T ss_pred ceEEEEeCCCC---ccCCCCEEEEEEecC-CCeE-----EEEEEEECCCCCCcCcccCcccCCCeeEEEEEEh
Confidence 444555433 5 599999999974221 1244 23356799999987 456789999999975
No 38
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=83.14 E-value=1.8 Score=46.38 Aligned_cols=65 Identities=23% Similarity=0.336 Sum_probs=45.0
Q ss_pred CCCeEEEEEEEeccCCCccccCeeEEEecCCCCCCCcccc---cccceeE--EEeCCCCceEeCCccCceeEE
Q 005706 381 EERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTE---CKDYQFW--TTADEDGCFSIKNIRTGNYNL 448 (682)
Q Consensus 381 ~qRGtVsG~v~~~D~~~~~pa~~a~V~L~~~~~~gs~q~~---~k~yqYw--t~td~~G~FtI~nVrpGtY~L 448 (682)
.++=.|+|+|...+| +|..+|.|-+-.....|....+ ....++. ..||++|.|.+.-|+||-|-+
T Consensus 130 G~pl~v~G~V~D~~G---~Pv~gA~VdiWqada~G~Ys~~~~~~~~~~lRGr~~TDadG~y~F~TI~Pg~Ypi 199 (281)
T TIGR02438 130 GTPLVFSGQVTDLDG---NGLAGAKVELWHADDDGFYSQFAPGIPEWNLRGTIIADDEGRFEITTMQPAPYQI 199 (281)
T ss_pred CCEEEEEEEEEcCCC---CCcCCCEEEEEecCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEEEECCCCcCC
Confidence 356789999997777 4999999998444444432211 1112223 568999999999999999964
No 39
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=82.81 E-value=2.9 Score=43.37 Aligned_cols=67 Identities=24% Similarity=0.379 Sum_probs=46.6
Q ss_pred CCCCCeEEEEEEEeccCCCccccCeeEEEecCCCCCCCcccc--------cccceeE--EEeCCCCceEeCCccCceeEE
Q 005706 379 KSEERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTE--------CKDYQFW--TTADEDGCFSIKNIRTGNYNL 448 (682)
Q Consensus 379 ~~~qRGtVsG~v~~~D~~~~~pa~~a~V~L~~~~~~gs~q~~--------~k~yqYw--t~td~~G~FtI~nVrpGtY~L 448 (682)
+..++=.|+|+|...+| .|..+|.|=+-....+|.+..+ ..+++.+ ..||++|.|+|.-|+||-|..
T Consensus 56 ~~G~~i~l~G~V~D~~g---~PV~~A~VEIWQada~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~TI~PG~Y~~ 132 (220)
T TIGR02422 56 PIGERIIVHGRVLDEDG---RPVPNTLVEVWQANAAGRYRHKNDQYLAPLDPNFGGVGRTLTDSDGYYRFRTIKPGPYPW 132 (220)
T ss_pred CCCCEEEEEEEEECCCC---CCCCCCEEEEEecCCCCcccCccCccccccCCCCCCEEEEEECCCccEEEEEECCCCccC
Confidence 34567889999997666 5999999988554444433221 1123323 458999999999999999844
No 40
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=81.00 E-value=36 Score=42.92 Aligned_cols=42 Identities=24% Similarity=0.284 Sum_probs=37.6
Q ss_pred ccEEEEEeCcEEEEECCeEEEEEeCCCeeEEEEEEcCeecccc
Q 005706 55 QAVRLHIKDHHVVLDNGILQVTLSKPGGIVTGIRYNGIDNLLE 97 (682)
Q Consensus 55 a~~~~~~~g~~~vidNg~l~vtv~k~~G~itsi~y~G~enll~ 97 (682)
.++.+.+++..++|.++.++++|+|.+|.|+|++++|.+ ||.
T Consensus 715 ~~~~~~~~~~~~~i~~~~~~~~fdk~tG~l~s~~~~g~~-ll~ 756 (1021)
T PRK10340 715 RPLTLEEDRLSCTVRGYNFAITFSKVSGKLTSWQVNGES-LLT 756 (1021)
T ss_pred CCeeEEecCCEEEEEeCCEEEEEECCcceEEEEEeCCee-eec
Confidence 457788999999999999999999999999999999997 544
No 41
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=79.53 E-value=2.9 Score=44.79 Aligned_cols=65 Identities=23% Similarity=0.386 Sum_probs=46.0
Q ss_pred CCCeEEEEEEEeccCCCccccCeeEEEecCCCCCCCcccc---ccccee--EEEeCCCCceEeCCccCceeEE
Q 005706 381 EERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTE---CKDYQF--WTTADEDGCFSIKNIRTGNYNL 448 (682)
Q Consensus 381 ~qRGtVsG~v~~~D~~~~~pa~~a~V~L~~~~~~gs~q~~---~k~yqY--wt~td~~G~FtI~nVrpGtY~L 448 (682)
.++=.|+|+|...+| .|..+|.|=+-.....|.+..+ ...... ...||++|.|.+.-|+||-|-+
T Consensus 118 G~~l~v~G~V~D~~G---~Pv~gA~VeiWqad~~G~Y~~~~~~~~~~~lRGr~~Td~~G~y~F~Ti~Pg~Ypi 187 (277)
T cd03461 118 GEPCFVHGRVTDTDG---KPLPGATVDVWQADPNGLYDVQDPDQPEFNLRGKFRTDEDGRYAFRTLRPTPYPI 187 (277)
T ss_pred CCEEEEEEEEEcCCC---CCcCCcEEEEECcCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEEEECCCCcCC
Confidence 456789999997777 4888999988554444533221 112222 2568999999999999999975
No 42
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=78.14 E-value=3.1 Score=39.94 Aligned_cols=69 Identities=20% Similarity=0.184 Sum_probs=45.5
Q ss_pred cEEEEEEeCCCCCCCcEEEEEEEeccCCCeEEEEEcCCCCCCCcccccccCCCCceecceeeeeeEEEEEEeeCCCeeee
Q 005706 572 TWQIKFKLDHVDRNSSYKLRVAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEG 651 (682)
Q Consensus 572 ~w~I~F~L~~~~~~~~~tLriala~a~~~~~~V~vN~~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G 651 (682)
-.+=+|+|++......+.|++... ...-.|.|||+.++ ...|.+..++++|+. .|+.|
T Consensus 71 wYr~~f~lp~~~~~~~~~L~f~gv---~~~a~v~vNG~~vg------------------~~~~~~~~~~~dIt~-~l~~g 128 (167)
T PF02837_consen 71 WYRRTFTLPADWKGKRVFLRFEGV---DYAAEVYVNGKLVG------------------SHEGGYTPFEFDITD-YLKPG 128 (167)
T ss_dssp EEEEEEEESGGGTTSEEEEEESEE---ESEEEEEETTEEEE------------------EEESTTS-EEEECGG-GSSSE
T ss_pred EEEEEEEeCchhcCceEEEEeccc---eEeeEEEeCCeEEe------------------eeCCCcCCeEEeChh-hccCC
Confidence 344568887754333455555433 35678999996442 123556789999975 78899
Q ss_pred e-cEEEEEeecC
Q 005706 652 E-NTIFLKQPRC 662 (682)
Q Consensus 652 ~-NtI~lt~~~g 662 (682)
. |+|.+.+.+.
T Consensus 129 ~~N~l~V~v~~~ 140 (167)
T PF02837_consen 129 EENTLAVRVDNW 140 (167)
T ss_dssp EEEEEEEEEESS
T ss_pred CCEEEEEEEeec
Confidence 8 9999999763
No 43
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=76.59 E-value=5.7 Score=42.72 Aligned_cols=65 Identities=18% Similarity=0.309 Sum_probs=47.3
Q ss_pred CCCeEEEEEEEeccCCCccccCeeEEEecCCCCCCCccc--c-ccccee--EEEeCCCCceEeCCccCceeEE
Q 005706 381 EERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQT--E-CKDYQF--WTTADEDGCFSIKNIRTGNYNL 448 (682)
Q Consensus 381 ~qRGtVsG~v~~~D~~~~~pa~~a~V~L~~~~~~gs~q~--~-~k~yqY--wt~td~~G~FtI~nVrpGtY~L 448 (682)
.++=.|+|+|...+|+ |..+|.|=+-.....|.+.. . ..+++. ...||++|.|.+.-|+||-|-+
T Consensus 122 Gepl~l~G~V~D~~G~---PI~~A~VeiWqad~~G~Ys~~~~~~~~f~~RGr~~TD~~G~y~F~TI~P~~Ypi 191 (282)
T cd03460 122 GETLVMHGTVTDTDGK---PVPGAKVEVWHANSKGFYSHFDPTQSPFNLRRSIITDADGRYRFRSIMPSGYGV 191 (282)
T ss_pred CCEEEEEEEEECCCCC---CcCCcEEEEECCCCCCCcCCCCCCCCCCCCceEEEeCCCCCEEEEEECCCCCcC
Confidence 4567899999977774 99999998866555554332 1 123333 3668999999999999999853
No 44
>PRK11114 cellulose synthase regulator protein; Provisional
Probab=76.49 E-value=4.1 Score=49.44 Aligned_cols=75 Identities=21% Similarity=0.248 Sum_probs=49.5
Q ss_pred EEEEEeCCCCCCCcEEEEEEEecc-----CCCeEEEEEcCCCCCCCcccccccCCCCceecceeeeeeEEEEEEeeCCCe
Q 005706 574 QIKFKLDHVDRNSSYKLRVAIASA-----TLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRF 648 (682)
Q Consensus 574 ~I~F~L~~~~~~~~~tLriala~a-----~~~~~~V~vN~~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L 648 (682)
.|.|.+...+....++|+|...-+ ..++++|.|||+..+ +..+...+ .|.....+|+||+ .|
T Consensus 84 ~i~f~vp~d~~v~~A~L~L~y~~Sp~l~~~~S~L~V~lNg~~v~-----s~pL~~~~-------~~~~~~~~i~IP~-~l 150 (756)
T PRK11114 84 GIEFGVRSDEVVTKARLNLEYTYSPALLPDLSHLKVYLNGELMG-----TLPLDKEQ-------LGKKVLAQLPIDP-RF 150 (756)
T ss_pred eeEeecCccccccCcEEEEEEEECCCCCCCCCeEEEEECCEEeE-----EEecCccc-------CCCcceeEEecCH-HH
Confidence 677777666544456666665554 247899999997554 12222111 2445788999999 56
Q ss_pred eeeecEEEEEeec
Q 005706 649 IEGENTIFLKQPR 661 (682)
Q Consensus 649 ~~G~NtI~lt~~~ 661 (682)
..|.|.|.|....
T Consensus 151 ~~g~N~L~~~~~~ 163 (756)
T PRK11114 151 ITDFNRLRLEFIG 163 (756)
T ss_pred cCCCceEEEEEec
Confidence 6899999998643
No 45
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=76.14 E-value=5.5 Score=42.93 Aligned_cols=65 Identities=18% Similarity=0.322 Sum_probs=46.8
Q ss_pred CCCeEEEEEEEeccCCCccccCeeEEEecCCCCCCCccc--c-cccceeE--EEeCCCCceEeCCccCceeEE
Q 005706 381 EERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQT--E-CKDYQFW--TTADEDGCFSIKNIRTGNYNL 448 (682)
Q Consensus 381 ~qRGtVsG~v~~~D~~~~~pa~~a~V~L~~~~~~gs~q~--~-~k~yqYw--t~td~~G~FtI~nVrpGtY~L 448 (682)
.++=.|+|+|...+| +|..+|.|=+-.....|.+.. . ..+.+.+ ..||++|.|.+.-|+||-|-+
T Consensus 126 G~pl~v~G~V~D~~G---~PI~gA~VeIWqad~~G~Ys~~~~~~~~~~lRG~~~TD~~G~y~F~TI~P~~Ypi 195 (285)
T TIGR02439 126 GETLFLHGQVTDADG---KPIAGAKVELWHANTKGNYSHFDKSQSEFNLRRTIITDAEGRYRARSIVPSGYGC 195 (285)
T ss_pred CcEEEEEEEEECCCC---CCcCCcEEEEEccCCCCCcCCCCCCCCCCCceEEEEECCCCCEEEEEECCCCCcC
Confidence 356789999997776 499999998865555553332 1 1233333 568999999999999999853
No 46
>KOG4342 consensus Alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=75.89 E-value=10 Score=44.71 Aligned_cols=49 Identities=29% Similarity=0.443 Sum_probs=35.4
Q ss_pred ccEEEEEeCcEEEEECCeEEEEEeCCCeeEEEEEE--cCeecccccccCCCcce
Q 005706 55 QAVRLHIKDHHVVLDNGILQVTLSKPGGIVTGIRY--NGIDNLLEFRNKETNRG 106 (682)
Q Consensus 55 a~~~~~~~g~~~vidNg~l~vtv~k~~G~itsi~y--~G~enll~~~~~~~~~g 106 (682)
.++.+. .+++++++||+|.|+|.+ +|.||||.- .|.| .|+...+.++.|
T Consensus 706 p~~~yq-~Dd~~~L~Ng~lrV~i~p-~G~itSl~d~~~grE-~ld~~~Grn~~G 756 (1078)
T KOG4342|consen 706 PVFVYQ-TDDSVTLDNGILRVKIDP-TGRITSLVDVASGRE-ALDTAEGRNAVG 756 (1078)
T ss_pred ceeEEe-cCCeEEEECCEEEEEECC-CCceeeeeehhcccc-hhcccccccccC
Confidence 344444 678999999999999986 699999964 4665 555555554555
No 47
>PF00576 Transthyretin: HIUase/Transthyretin family; InterPro: IPR023416 This family includes transthyretin that is a thyroid hormone-binding protein that transports thyroxine from the bloodstream to the brain. However, most of the sequences listed in this family do not bind thyroid hormones. They are actually enzymes of the purine catabolism that catalyse the conversion of 5-hydroxyisourate (HIU) to OHCU [, ]. HIU hydrolysis is the original function of the family and is conserved from bacteria to mammals; transthyretins arose by gene duplications in the vertebrate lineage [, ]. HIUases are distinguished in the alignment from the conserved C-terminal YRGS sequence. Transthyretin (formerly prealbumin) is one of 3 thyroid hormone-binding proteins found in the blood of vertebrates []. It is produced in the liver and circulates in the bloodstream, where it binds retinol and thyroxine (T4) []. It differs from the other 2 hormone-binding proteins (T4-binding globulin and albumin) in 3 distinct ways: (1) the gene is expressed at a high rate in the brain choroid plexus; (2) it is enriched in cerebrospinal fluid; and (3) no genetically caused absence has been observed, suggesting an essential role in brain function, distinct from that played in the bloodstream []. The protein consists of around 130 amino acids, which assemble as a homotetramer that contains an internal channel in which T4 is bound. Within this complex, T4 appears to be transported across the blood-brain barrier, where, in the choroid plexus, the hormone stimulates further synthesis of transthyretin. The protein then diffuses back into the bloodstream, where it binds T4 for transport back to the brain [].; PDB: 1TFP_B 1KGJ_D 1IE4_C 1GKE_C 1KGI_D 2H0J_B 2H0E_B 2H0F_B 1ZD6_A 3DGD_D ....
Probab=75.59 E-value=5.3 Score=37.23 Aligned_cols=59 Identities=25% Similarity=0.277 Sum_probs=38.9
Q ss_pred EEEEEEecc-CCCccccCeeEEEecCCCCCCCcccccccceeEEEeCCCCce-----EeCCccCceeEEEEEE
Q 005706 386 VSGRLLVQD-SNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCF-----SIKNIRTGNYNLYAWV 452 (682)
Q Consensus 386 VsG~v~~~D-~~~~~pa~~a~V~L~~~~~~gs~q~~~k~yqYwt~td~~G~F-----tI~nVrpGtY~L~a~~ 452 (682)
|+=+|+... | +||.++.|-|....+.++|+ .-.-+.||+||+. .-..+.+|.|+|..-.
T Consensus 3 iStHVLDt~~G---~PA~gv~V~L~~~~~~~~~~-----~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~ 67 (112)
T PF00576_consen 3 ISTHVLDTTTG---KPAAGVPVTLYRLDSDGSWT-----LLAEGVTDADGRIKQPLLEGESLEPGIYKLVFDT 67 (112)
T ss_dssp EEEEEEETTTT---EE-TT-EEEEEEEETTSCEE-----EEEEEEBETTSEESSTSSETTTS-SEEEEEEEEH
T ss_pred cEEEEeeCCCC---CCccCCEEEEEEecCCCCcE-----EEEEEEECCCCcccccccccccccceEEEEEEEH
Confidence 344444333 5 69999999997644445566 4445779999988 3457889999999875
No 48
>PF02929 Bgal_small_N: Beta galactosidase small chain; InterPro: IPR004199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Beta-galactosidase enzymes (3.2.1.23 from EC) belong to several glycoside hydrolase families: GH1 from CAZY, GH2 from CAZY, GH35 from CAZY and GH42 from CAZY. Beta-galactosidase is the product of the lac operon Z gene of Escherichia coli. This enzyme catalyses the hydrolysis of the disaccharide lactose to galactose and glucose, and can also convert lactose to allolactose, the inducer of the lac operon. This domain is found in single chain beta-galactosidases, which are comprised of five domains. The active site is located in a deep pocket built around the central alpha-beta barrel, with the other domains conferring specificity for a disaccharide substrate. This entry represents domain 5 of glycoside hydrolase family 2, which contains an N-terminal loop that swings towards the active site upon the deep binding of a ligand to produce a closed conformation []. This domain is also found in the amino-terminal portion of the small chain of dimeric beta-galactosidases.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1JZ3_D 1JYY_H 1GHO_P 3VD9_B 3I3E_B 3T0B_A 3T09_C 1F4A_D 3VDC_C 3VDB_D ....
Probab=75.08 E-value=28 Score=37.06 Aligned_cols=30 Identities=27% Similarity=0.485 Sum_probs=25.7
Q ss_pred EEECCeEEEEEeCCCeeEEEEEEcCeecccc
Q 005706 67 VLDNGILQVTLSKPGGIVTGIRYNGIDNLLE 97 (682)
Q Consensus 67 vidNg~l~vtv~k~~G~itsi~y~G~enll~ 97 (682)
+|.++..+++|+|.+|.++|++|+|.| ||.
T Consensus 1 tV~g~~f~~~Fdk~~G~l~s~~~~g~~-ll~ 30 (276)
T PF02929_consen 1 TVSGKDFSYVFDKKTGTLTSYKYNGKE-LLK 30 (276)
T ss_dssp -EEETTEEEEEETTTTCEEEEEETTEE-EEC
T ss_pred CCccCCEEEEEECCCCeEEEEEECCEE-eec
Confidence 467778999999999999999999987 554
No 49
>cd05469 Transthyretin_like Transthyretin_like. This domain is present in the transthyretin-like protein (TLP) family which includes transthyretin (TTR) and a transthyretin-related protein called 5-hydroxyisourate hydrolase (HIUase). TTR and HIUase are homotetrameric proteins with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits. TTR transports thyroid hormones and retinol in the blood serum of vertebrates while HIUase catalyzes the second step in a three-step ureide pathway. TTRs are highly conserved and found only in vertebrates while the HIUases are found in a wide range of bacterial, plant, fungal, slime mold and vertebrate organisms.
Probab=74.71 E-value=5.8 Score=37.13 Aligned_cols=49 Identities=18% Similarity=0.198 Sum_probs=35.5
Q ss_pred cccCeeEEEecCCCCCCCcccccccceeEEEeCCCCceEe----CCccCceeEEEEEE
Q 005706 399 ISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSI----KNIRTGNYNLYAWV 452 (682)
Q Consensus 399 ~pa~~a~V~L~~~~~~gs~q~~~k~yqYwt~td~~G~FtI----~nVrpGtY~L~a~~ 452 (682)
.||.++.|.|......++|+ .---.+||+||+..- ..+.+|.|+|..-.
T Consensus 14 ~PAagv~V~L~~~~~~~~w~-----~l~~~~Tn~DGR~~~~l~~~~~~~G~Y~l~F~t 66 (113)
T cd05469 14 SPAANVAIKVFRKTADGSWE-----IFATGKTNEDGELHGLITEEEFXAGVYRVEFDT 66 (113)
T ss_pred ccCCCCEEEEEEecCCCceE-----EEEEEEECCCCCccCccccccccceEEEEEEeh
Confidence 59999999997532223454 334467999999853 35789999999875
No 50
>smart00606 CBD_IV Cellulose Binding Domain Type IV.
Probab=74.03 E-value=40 Score=30.99 Aligned_cols=89 Identities=18% Similarity=0.353 Sum_probs=50.3
Q ss_pred ccEEEEEE-eCCCCCCCcEEEEEEEeccC-CCeEEEEEcCCCCCCCcccccccCCCCceecceeeeeeEEEEEEeeCCCe
Q 005706 571 TTWQIKFK-LDHVDRNSSYKLRVAIASAT-LAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRF 648 (682)
Q Consensus 571 ~~w~I~F~-L~~~~~~~~~tLriala~a~-~~~~~V~vN~~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L 648 (682)
+.| |.|+ ++-. ..+.+++.|-.+... .++++|++++... ++..+..++.... . -.|...+.+|+ |
T Consensus 39 g~w-~~y~~vd~~-~~g~~~i~~~~as~~~~~~i~v~~d~~~G--~~~~~~~~p~tg~-----~-~~~~~~~~~v~---~ 105 (129)
T smart00606 39 GDW-IAYKDVDFG-SSGAYTFTARVASGNAGGSIELRLDSPTG--TLVGTVDVPSTGG-----W-QTYQTVSATVT---L 105 (129)
T ss_pred CCE-EEEEeEecC-CCCceEEEEEEeCCCCCceEEEEECCCCC--cEEEEEEeCCCCC-----C-ccCEEEEEEEc---c
Confidence 345 5565 4432 246788888777754 4689999997432 1222233332211 0 12334444443 4
Q ss_pred eeeecEEEEEeecCCCCCceEEEEEEEE
Q 005706 649 IEGENTIFLKQPRCTSPFQGIMYDYIRL 676 (682)
Q Consensus 649 ~~G~NtI~lt~~~gss~f~~vmyD~IrL 676 (682)
.+|.++|+|....++ . +..|.+++
T Consensus 106 ~~G~~~l~~~~~~~~-~---~~ld~~~F 129 (129)
T smart00606 106 PAGVHDVYLVFKGGN-Y---FNIDWFRF 129 (129)
T ss_pred CCceEEEEEEEECCC-c---EEEEEEEC
Confidence 489999999876543 2 77777654
No 51
>KOG2649 consensus Zinc carboxypeptidase [General function prediction only]
Probab=73.46 E-value=10 Score=43.52 Aligned_cols=104 Identities=13% Similarity=0.224 Sum_probs=66.1
Q ss_pred CCCCCCcchhHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCeEEEEEEEeccCCCccccCeeEEEecCCCCCCCcccccc
Q 005706 343 AADGDDPLWLWEDAKIKMMSEVQSWPYNFPASEDFQKSEERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECK 422 (682)
Q Consensus 343 g~~~~~~~~l~~DA~~~~~~E~~~Wpy~f~~s~~y~~~~qRGtVsG~v~~~D~~~~~pa~~a~V~L~~~~~~gs~q~~~k 422 (682)
-+..+....+|++-|.-.. .|+.. -.--|+|-|....| .|..+|+|-+..-
T Consensus 352 fP~e~eLp~~WE~Nr~sLl--------------~f~eq-vH~GIkG~V~D~~G---~~I~NA~IsV~gi----------- 402 (500)
T KOG2649|consen 352 FPKESELPTLWEYNRKSLL--------------NFVEQ-VHRGIKGLVFDDTG---NPIANATISVDGI----------- 402 (500)
T ss_pred CCchhhhHHHHHhhHHHHH--------------HHHHH-HHhccceeEEcCCC---CccCceEEEEecC-----------
Confidence 3443445678888765432 12211 12458999987656 4899999999642
Q ss_pred cceeEEEeCCCCceEeCCccCceeEEEEEECceeeeeeeeeEEEEeCCceeeecceEEcC
Q 005706 423 DYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSDALVTITSGSNIKMGDLVYEP 482 (682)
Q Consensus 423 ~yqYwt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~~~~VtV~aG~t~~lg~l~~~~ 482 (682)
.-=.+|..+|.|=- =..||.|.++|.++|+. ....+|+|..-..+.. ++++..
T Consensus 403 --nHdv~T~~~GDYWR-LL~PG~y~vta~A~Gy~---~~tk~v~V~~~~a~~~-df~L~~ 455 (500)
T KOG2649|consen 403 --NHDVTTAKEGDYWR-LLPPGKYIITASAEGYD---PVTKTVTVPPDRAARV-NFTLQR 455 (500)
T ss_pred --cCceeecCCCceEE-eeCCcceEEEEecCCCc---ceeeEEEeCCCCccce-eEEEec
Confidence 22234566676532 37899999999998864 5566788886333334 577754
No 52
>cd05821 TLP_Transthyretin Transthyretin (TTR) is a 55 kDa protein responsible for the transport of thyroid hormones and retinol in vertebrates. TTR distributes the two thyroid hormones T3 (3,5,3'-triiodo-L-thyronine) and T4 (Thyroxin, or 3,5,3',5'-tetraiodo-L-thyronine), as well as retinol (vitamin A) through the formation of a macromolecular complex that includes each of these as well as retinol-binding protein. Misfolded forms of TTR are implicated in the amyloid diseases familial amyloidotic polyneuropathy and senile systemic amyloidosis. TTR forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits, which differ in their ligand binding affinity. A negative cooperativity has been observed for the binding of T4 and other TTR ligands. A fraction of plasma TTR is carried in high density lipoproteins by bindi
Probab=73.44 E-value=9.1 Score=36.27 Aligned_cols=62 Identities=16% Similarity=0.095 Sum_probs=43.3
Q ss_pred CeEEEEEEEecc-CCCccccCeeEEEecCCCCCCCcccccccceeEEEeCCCCceE----eCCccCceeEEEEEE
Q 005706 383 RGCVSGRLLVQD-SNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFS----IKNIRTGNYNLYAWV 452 (682)
Q Consensus 383 RGtVsG~v~~~D-~~~~~pa~~a~V~L~~~~~~gs~q~~~k~yqYwt~td~~G~Ft----I~nVrpGtY~L~a~~ 452 (682)
|-.|+=.|+... | +||.++.|.|......+.|+ .---++||+||+.. -..+.+|.|+|..-.
T Consensus 6 ~~~ittHVLDt~~G---~PAaGV~V~L~~~~~~~~w~-----~l~~~~Tn~DGR~~~ll~~~~~~~G~Y~l~F~t 72 (121)
T cd05821 6 KCPLMVKVLDAVRG---SPAANVAVKVFKKTADGSWE-----PFASGKTTETGEIHGLTTDEQFTEGVYKVEFDT 72 (121)
T ss_pred CCCcEEEEEECCCC---ccCCCCEEEEEEecCCCceE-----EEEEEEECCCCCCCCccCccccCCeeEEEEEeh
Confidence 666777776544 5 59999999996522123454 34457799999885 234678999999865
No 53
>PF07748 Glyco_hydro_38C: Glycosyl hydrolases family 38 C-terminal domain; InterPro: IPR011682 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 38 GH38 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.24 from EC) (3.2.1.114 from EC). This domain is found at the C terminus of glycosyl hydrolases from family 38.; GO: 0015923 mannosidase activity, 0006013 mannose metabolic process; PDB: 2WYI_A 2WYH_A 3LVT_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A ....
Probab=73.20 E-value=27 Score=38.86 Aligned_cols=151 Identities=13% Similarity=0.160 Sum_probs=80.4
Q ss_pred hhhhccccCccccccEEEEEeCcE--------------EEEECCeEEEEEeCCCeeEEEE--EEcCeecccccccCCCcc
Q 005706 42 QVLQNSTWPAMPTQAVRLHIKDHH--------------VVLDNGILQVTLSKPGGIVTGI--RYNGIDNLLEFRNKETNR 105 (682)
Q Consensus 42 ~~~~~~~~~~~~~a~~~~~~~g~~--------------~vidNg~l~vtv~k~~G~itsi--~y~G~enll~~~~~~~~~ 105 (682)
.+++.+-.|+++...+.+...... .+|+|+.+.|+|+..+|.|++| |-+|.+ +... ..+
T Consensus 51 ~l~f~~~vPalGy~~~~i~~~~~~~~~~~~~~~~~~~~~~leN~~~~v~~~~~tG~i~sl~dk~~g~~-~~~~---~~~- 125 (457)
T PF07748_consen 51 ELLFVVDVPALGYKTYRIVEGESSEPSNEASIAKDSGDNVLENEFYKVTFDPNTGGIKSLYDKKTGRE-YVDQ---DGN- 125 (457)
T ss_dssp EEEEEEEE-TTEEEEEEEEECSS--TTC--CEEETT-TTEEETSSEEEEE-TTTSSEEEEEETTTS-E-EEEE---ECE-
T ss_pred EEEEEeccCCceeEEEEeeccccccccccceeecceeeEEEEccEEEEEEeCCCCeEEEEEEccCCeE-EEee---cCC-
Confidence 344466778888888877764411 5899999999999877999999 555554 3311 011
Q ss_pred eeeEEEeCCCCCC-CceeeeccceEEEEEecCCEEEEEEEEeec-CC------CCCCcccceeeEEEEEecCCceeEEEE
Q 005706 106 GYWDLMWNPPGGK-GMFDVISGTSFRVVVENEEQVELSFLRTWA-SS------HEGNYIPLNIDKRFIMLRGSSGFYSYA 177 (682)
Q Consensus 106 gY~D~~w~~~g~~-g~~~~~~gt~~~vi~~~~~~i~Vs~~~~~~-~s------~~g~~~~l~l~~~~v~r~G~sgiY~y~ 177 (682)
.++.+.-..+... -.+..-......++++++-...|.+...+. |. .........+.+.+.|.+|++-|..=+
T Consensus 126 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~p~~~~~~~~~~~~~~~~i~~~i~L~~~~~~ie~~~ 205 (457)
T PF07748_consen 126 DFYIYEDIDGDYDISPLELQRSGAYLFVEDGPLRSSIRVEYKFELPKNLSLVKRSEQTGSSRITQTIRLYKGSPRIEFET 205 (457)
T ss_dssp EEEEEEBTTSCTTE-SCCCGSEECCEEEEESSSEEEEEEEEEEEEESCBECEEEESCEEEEEEEEEEEEETTESSEEEEE
T ss_pred ceeEeccccccccccccccccCceEEEEecCCceEEEEEEEEEeccCCcEEEEEEEeccceEEEEEEEEecCceEEEEEE
Confidence 1221211011000 000000122333445667666666655541 00 001123447899999999999999866
Q ss_pred EeeccccCCCCCccceEEEEEeC
Q 005706 178 IYEHLKEWPAFTLGQTRFTFKLR 200 (682)
Q Consensus 178 ~~~~~~~~p~~~lgE~R~v~Rl~ 200 (682)
.+.+... +.. -++|+.|..+
T Consensus 206 ~vdn~~~--~~~-~~l~~~f~t~ 225 (457)
T PF07748_consen 206 EVDNWAE--DHR-KELRVRFPTN 225 (457)
T ss_dssp EEEE-TT--SCE-EEEEEEEEES
T ss_pred Eeccccc--CCc-eeEEEEeecC
Confidence 6653121 111 3677777665
No 54
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=73.19 E-value=93 Score=39.45 Aligned_cols=41 Identities=15% Similarity=0.267 Sum_probs=36.6
Q ss_pred cEEEEEeCcEEEEECCeEEEEEeCCCeeEEEEEEcCeecccc
Q 005706 56 AVRLHIKDHHVVLDNGILQVTLSKPGGIVTGIRYNGIDNLLE 97 (682)
Q Consensus 56 ~~~~~~~g~~~vidNg~l~vtv~k~~G~itsi~y~G~enll~ 97 (682)
+..+.+.+..++|.++.++++|+|.+|.++|++++|.| ||.
T Consensus 741 ~~~~~~~~~~~~i~~~~~~~~f~~~~G~l~s~~~~g~~-~l~ 781 (1027)
T PRK09525 741 APQLTQDEQDFCIELGNQRWQFNRQSGLLSQWWVGGKE-QLL 781 (1027)
T ss_pred CceEEEcCCeEEEEECCEEEEEECCCceEEEEEECCEE-eec
Confidence 45678899999999999999999999999999999998 543
No 55
>PF14315 DUF4380: Domain of unknown function (DUF4380)
Probab=72.33 E-value=63 Score=34.36 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=29.2
Q ss_pred cEEEEECCeEEEEEeCCCe-eEEEEEEcCeeccc
Q 005706 64 HHVVLDNGILQVTLSKPGG-IVTGIRYNGIDNLL 96 (682)
Q Consensus 64 ~~~vidNg~l~vtv~k~~G-~itsi~y~G~enll 96 (682)
+.+.|+|+.++++|+-.-| .|.++.++|.+|++
T Consensus 5 ~~~~l~N~~i~l~Vtp~~GgRIl~~~~~g~~N~~ 38 (274)
T PF14315_consen 5 NCLRLSNGDIELIVTPDVGGRILSFGLNGGENLF 38 (274)
T ss_pred eEEEEECCCEEEEEecCCCCEEEEEEeCCCceEE
Confidence 4589999999999986666 99999999988998
No 56
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=71.88 E-value=7.3 Score=35.87 Aligned_cols=54 Identities=17% Similarity=0.107 Sum_probs=34.0
Q ss_pred EEEE-EEEeccCCCeEEEEEcCCCCCCCcccccccCCCCceecceeeeeeEEEEEEeeCCCeeeeecEEEEE
Q 005706 588 YKLR-VAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLK 658 (682)
Q Consensus 588 ~tLr-iala~a~~~~~~V~vN~~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~NtI~lt 658 (682)
..|+ +........+.+|.|||+.++. . .++ ..-..+|.||.+.|+.++|.|++-
T Consensus 50 ~~~~~l~~~~g~~~~~~vwVNG~~~G~-----~---------~~~---~g~q~tf~~p~~il~~~n~v~~vl 104 (111)
T PF13364_consen 50 TSLTPLNIQGGNAFRASVWVNGWFLGS-----Y---------WPG---IGPQTTFSVPAGILKYGNNVLVVL 104 (111)
T ss_dssp EEEE-EEECSSTTEEEEEEETTEEEEE-----E---------ETT---TECCEEEEE-BTTBTTCEEEEEEE
T ss_pred eeEEEEeccCCCceEEEEEECCEEeee-----e---------cCC---CCccEEEEeCceeecCCCEEEEEE
Confidence 4455 5555566789999999975541 0 011 111289999999999985555443
No 57
>COG2351 Transthyretin-like protein [General function prediction only]
Probab=71.41 E-value=13 Score=35.11 Aligned_cols=66 Identities=26% Similarity=0.358 Sum_probs=45.1
Q ss_pred eEEEEEEEeccCCCccccCeeEEEecCCCCCCCcccccccceeEEEeCCCCceEe-----CCccCceeEEEEEECceeee
Q 005706 384 GCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSI-----KNIRTGNYNLYAWVPGFVGD 458 (682)
Q Consensus 384 GtVsG~v~~~D~~~~~pa~~a~V~L~~~~~~gs~q~~~k~yqYwt~td~~G~FtI-----~nVrpGtY~L~a~~~G~~G~ 458 (682)
|.++=.|+..... +||.++.|.|..-..+ .|+ ----+.||+||+-.- ..+++|.|+|..-+ ||
T Consensus 9 G~LTTHVLDta~G--kPAagv~V~L~rl~~~-~~~-----~l~t~~Tn~DGR~d~pll~g~~~~~G~Y~l~F~~----gd 76 (124)
T COG2351 9 GRLTTHVLDTASG--KPAAGVKVELYRLEGN-QWE-----LLKTVVTNADGRIDAPLLAGETLATGIYELVFHT----GD 76 (124)
T ss_pred ceeeeeeeecccC--CcCCCCEEEEEEecCC-cce-----eeeEEEecCCCcccccccCccccccceEEEEEEc----ch
Confidence 5666676654432 6999999999743222 333 233477899998763 46789999999864 77
Q ss_pred eee
Q 005706 459 YRS 461 (682)
Q Consensus 459 ~~~ 461 (682)
|..
T Consensus 77 Yf~ 79 (124)
T COG2351 77 YFK 79 (124)
T ss_pred hhh
Confidence 654
No 58
>cd05822 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU). HIUase has high sequence similarity with transthyretins and is a member of the transthyretin-like protein (TLP) family. HIUase is distinguished from transthyretins by a conserved signature motif at its C-terminus that forms part of the active site. In HIUase, this motif is YRGS, while transthyretins have a conserved TAVV sequence in the same location. Most HIUases are cytosolic but in plants and slime molds, they are peroxisomal based on the presence of N-terminal periplasmic localization sequences. HIUase forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located betw
Probab=69.71 E-value=9.9 Score=35.49 Aligned_cols=48 Identities=21% Similarity=0.236 Sum_probs=34.9
Q ss_pred cccCeeEEEecCCCCCCCcccccccceeEEEeCCCCceEe-----CCccCceeEEEEEE
Q 005706 399 ISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSI-----KNIRTGNYNLYAWV 452 (682)
Q Consensus 399 ~pa~~a~V~L~~~~~~gs~q~~~k~yqYwt~td~~G~FtI-----~nVrpGtY~L~a~~ 452 (682)
+||.++-|-|....+ ++|+ .-.-++||+||+..- ..+++|+|+|..-.
T Consensus 14 ~PAagv~V~L~~~~~-~~~~-----~i~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~ 66 (112)
T cd05822 14 KPAAGVAVTLYRLDG-NGWT-----LLATGVTNADGRCDDLLPPGAQLAAGTYKLTFDT 66 (112)
T ss_pred cccCCCEEEEEEecC-CCeE-----EEEEEEECCCCCccCcccccccCCCeeEEEEEEh
Confidence 599999999975322 1233 333477999999853 45889999999975
No 59
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity []. Nucleotide sequence analysis showed the cellulose synthase operon to consist of 4 genes, designated bcsA, bcsB, bcsC and bcsD, all of which are required for maximal bacterial cellulose synthesis in A. xylinum. The calculated molecular mass of the protein encoded by bcsB is 85.3kDa []. BcsB encodes the catalytic subunit of cellulose synthase. The protein polymerises uridine 5'-diphosphate glucose to cellulose: UDP-glucose + (1,4-beta-D-glucosyl)(N) = UDP + (1,4-beta-D-glucosyl)(N+1). The enzyme is specifically activated by the nucleotide cyclic diguanylic acid. Sequence analysis suggests that BcsB contains several transmembrane (TM) domains, and shares a high degree of similarity with Escherichia coli YhjN.; GO: 0006011 UDP-glucose metabolic process, 0016020 membrane
Probab=69.19 E-value=7.4 Score=45.82 Aligned_cols=78 Identities=18% Similarity=0.152 Sum_probs=52.5
Q ss_pred ccEEEEEEeCCCC---CCCcEEEEEEEecc-----CCCeEEEEEcCCCCCCCcccccccCCCCceecceeeeeeEEEEEE
Q 005706 571 TTWQIKFKLDHVD---RNSSYKLRVAIASA-----TLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVN 642 (682)
Q Consensus 571 ~~w~I~F~L~~~~---~~~~~tLriala~a-----~~~~~~V~vN~~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ 642 (682)
.+..+.|.|+..- ......|.+..+.+ ..+++.|.|||+-+. . ..+.+ .-.+....+++.
T Consensus 324 ~~~~~~f~lP~dl~~~~~~~i~l~L~y~y~~~~~~~~S~l~V~vNg~~i~-s----~~L~~-------~~~~~~~~~~v~ 391 (605)
T PF03170_consen 324 QPISFNFRLPPDLFAWDGSGIPLHLRYRYTPGLDFDGSRLTVYVNGQFIG-S----LPLTP-------ADGAGFDRYTVS 391 (605)
T ss_pred CcceeEeeCCccccccCCCceEEEEEEecCCCCCCCCcEEEEEECCEEEE-e----EECCC-------CCCCccceeEEe
Confidence 5677888887642 23445555555554 257899999998654 1 12211 223456789999
Q ss_pred eeCCCeeeeecEEEEEeec
Q 005706 643 IPGTRFIEGENTIFLKQPR 661 (682)
Q Consensus 643 ipa~~L~~G~NtI~lt~~~ 661 (682)
|| ..++.|.|+|.|....
T Consensus 392 iP-~~~~~~~N~l~~~f~l 409 (605)
T PF03170_consen 392 IP-RLLLPGRNQLQFEFDL 409 (605)
T ss_pred cC-chhcCCCcEEEEEEEe
Confidence 99 9999999999887643
No 60
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=68.96 E-value=15 Score=36.53 Aligned_cols=62 Identities=21% Similarity=0.216 Sum_probs=46.2
Q ss_pred CeEEEEEEEeccCCCccccCeeEEEecCCCCCCCcccccccceeEEEeCCCCceEeCCccCceeEEEEEE
Q 005706 383 RGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWV 452 (682)
Q Consensus 383 RGtVsG~v~~~D~~~~~pa~~a~V~L~~~~~~gs~q~~~k~yqYwt~td~~G~FtI~nVrpGtY~L~a~~ 452 (682)
-..++.+|+ -+| +|..++.|.+..++. |. +........+||++|.++|+=-+||.|-|.+..
T Consensus 150 g~~~~~~vl-~~G---kPl~~a~V~~~~~~~---~~-~~~~~~~~~~TD~~G~~~~~~~~~G~wli~a~~ 211 (215)
T PF10670_consen 150 GDPLPFQVL-FDG---KPLAGAEVEAFSPGG---WY-DVEHEAKTLKTDANGRATFTLPRPGLWLIRASH 211 (215)
T ss_pred CCEEEEEEE-ECC---eEcccEEEEEEECCC---cc-ccccceEEEEECCCCEEEEecCCCEEEEEEEEE
Confidence 357888888 466 499999998865432 11 112227888999999999998899999998853
No 61
>PF14849 YidC_periplas: YidC periplasmic domain; PDB: 3BS6_B 3BLC_B.
Probab=66.24 E-value=85 Score=32.61 Aligned_cols=98 Identities=19% Similarity=0.275 Sum_probs=48.8
Q ss_pred EEEEECCeEEEEEeCCCeeEEEEEEcCee----------cccccccCCCcceeeEEEeCCC--C-----CCCceeeeccc
Q 005706 65 HVVLDNGILQVTLSKPGGIVTGIRYNGID----------NLLEFRNKETNRGYWDLMWNPP--G-----GKGMFDVISGT 127 (682)
Q Consensus 65 ~~vidNg~l~vtv~k~~G~itsi~y~G~e----------nll~~~~~~~~~gY~D~~w~~~--g-----~~g~~~~~~gt 127 (682)
.|+|+|+.+.++|+..+|.|.++.++.-. .|+.... ....+..+.+... + ....|.....
T Consensus 1 ~v~ven~~~~~~~s~~GG~i~~~~Lk~y~~~~~~~~~pv~L~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~f~~~~~- 77 (270)
T PF14849_consen 1 RVTVENDLFKVTFSSKGGRIKSVELKKYKNTLDPDSKPVELVDDSD--EENYPLAFGLVFNTGGAQLPTNDLYFSVSQK- 77 (270)
T ss_dssp -EEEE-SS-EEEEETBTTEEEEEEEEEEESSTT-SS-EEEECEEET--TEEEEEEEEEESTT--TTSGGS--B-B-S-S-
T ss_pred CEEEECCCEEEEEECCCCeEEEEEcCCCccccCCCCCceEEecCCC--CcceEEEEcccccCccccCCCccceEEEcCC-
Confidence 48999999999999999999999876431 1222111 1111233333211 1 1222433222
Q ss_pred eEEEEEecCCEEEEEEEEeecCCCCCCcccceeeEEEEEecCCcee
Q 005706 128 SFRVVVENEEQVELSFLRTWASSHEGNYIPLNIDKRFIMLRGSSGF 173 (682)
Q Consensus 128 ~~~vi~~~~~~i~Vs~~~~~~~s~~g~~~~l~l~~~~v~r~G~sgi 173 (682)
+. ++.+..+-..|+|+..- + ..+.|++.|.+.+++-.|
T Consensus 78 ~~-~l~~~~~~~~vtf~~~~-----~--~g~~i~k~ytf~~~~Y~~ 115 (270)
T PF14849_consen 78 SY-TLKEGGDSQSVTFTAQL-----G--NGLTITKTYTFKPDSYLV 115 (270)
T ss_dssp EE-E--TT-SEEEEEEEEE------T--TS-EEEEEEEEETT--EE
T ss_pred ce-eeccCCCceEEEEEEEC-----C--CCEEEEEEEEEcCCcEEE
Confidence 22 23334466678887752 1 125999999999886333
No 62
>smart00095 TR_THY Transthyretin.
Probab=65.24 E-value=15 Score=34.83 Aligned_cols=62 Identities=15% Similarity=0.121 Sum_probs=40.9
Q ss_pred CeEEEEEEEecc-CCCccccCeeEEEecCCCCCCCcccccccceeEEEeCCCCceE--e--CCccCceeEEEEEE
Q 005706 383 RGCVSGRLLVQD-SNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFS--I--KNIRTGNYNLYAWV 452 (682)
Q Consensus 383 RGtVsG~v~~~D-~~~~~pa~~a~V~L~~~~~~gs~q~~~k~yqYwt~td~~G~Ft--I--~nVrpGtY~L~a~~ 452 (682)
|-.|+=.|+... | .||.++.|.|....+.+.|+ .---.+||.||+.. + ..+.+|.|+|..-.
T Consensus 3 ~~plTtHVLDt~~G---~PAagv~V~L~~~~~~~~w~-----~la~~~Tn~DGR~~~ll~~~~~~~G~Y~l~F~t 69 (121)
T smart00095 3 KCPLMVKVLDAVRG---SPAVNVAVKVFKKTEEGTWE-----PFASGKTNESGEIHELTTDEKFVEGLYKVEFDT 69 (121)
T ss_pred CCCeEEEEEECCCC---ccCCCCEEEEEEeCCCCceE-----EEEEEecCCCccccCccCcccccceEEEEEEeh
Confidence 344666666443 5 59999999996422123344 22336799999884 1 35779999999864
No 63
>PLN03059 beta-galactosidase; Provisional
Probab=63.94 E-value=7.2 Score=47.66 Aligned_cols=86 Identities=13% Similarity=0.148 Sum_probs=53.3
Q ss_pred ccEEEEEEeCCCCCCCcEEEEEEEeccCCCeEEEEEcCCCCCC--CcccccccCCCCceeccee--------eeeeEEEE
Q 005706 571 TTWQIKFKLDHVDRNSSYKLRVAIASATLAELQVRVNDPNANR--PLFTTGLIGRDNAIARHGI--------HGLYLLYH 640 (682)
Q Consensus 571 ~~w~I~F~L~~~~~~~~~tLriala~a~~~~~~V~vN~~~~~~--p~~~~~~~~~~~~i~R~~~--------~G~~~~~~ 640 (682)
+=.+-.|+++... .. ++|-....+.=+|.|||+.+++ +.. +..-+=+.|-+|+++ .|--...-
T Consensus 621 twYK~~Fd~p~g~--Dp----v~LDm~gmGKG~aWVNG~nIGRYW~~~-a~~~gC~~c~y~g~~~~~kc~~~cggP~q~l 693 (840)
T PLN03059 621 TWYKTTFDAPGGN--DP----LALDMSSMGKGQIWINGQSIGRHWPAY-TAHGSCNGCNYAGTFDDKKCRTNCGEPSQRW 693 (840)
T ss_pred eEEEEEEeCCCCC--CC----EEEecccCCCeeEEECCcccccccccc-cccCCCccccccccccchhhhccCCCceeEE
Confidence 3346778874421 11 2333345667789999999885 221 111122456677776 23455666
Q ss_pred EEeeCCCeeeeecEEEEEeecCC
Q 005706 641 VNIPGTRFIEGENTIFLKQPRCT 663 (682)
Q Consensus 641 ~~ipa~~L~~G~NtI~lt~~~gs 663 (682)
+.||+++|++|.|+|.|==..+.
T Consensus 694 YHVPr~~Lk~g~N~lViFEe~gg 716 (840)
T PLN03059 694 YHVPRSWLKPSGNLLIVFEEWGG 716 (840)
T ss_pred EeCcHHHhccCCceEEEEEecCC
Confidence 78999999999999887544443
No 64
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=63.54 E-value=14 Score=37.49 Aligned_cols=63 Identities=16% Similarity=0.144 Sum_probs=41.9
Q ss_pred CeEEEEEEEeccCCCccccCeeEEEecCCCCCCCcccc---c------ccce-e--EEEeCCCCceEeCCccCceeE
Q 005706 383 RGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTE---C------KDYQ-F--WTTADEDGCFSIKNIRTGNYN 447 (682)
Q Consensus 383 RGtVsG~v~~~D~~~~~pa~~a~V~L~~~~~~gs~q~~---~------k~yq-Y--wt~td~~G~FtI~nVrpGtY~ 447 (682)
.=.+.|+|...+ .+.|..+|.|=+-.....|..... . .+.. . +..||++|.|+|.-|.||-|.
T Consensus 26 pl~l~g~V~D~~--~c~Pv~~a~VdiWh~da~G~Ys~~~~~~~~~~~~~~~~flRG~~~TD~~G~~~F~TI~PG~Y~ 100 (188)
T cd03457 26 PLTLDLQVVDVA--TCCPPPNAAVDIWHCDATGVYSGYSAGGGGGEDTDDETFLRGVQPTDADGVVTFTTIFPGWYP 100 (188)
T ss_pred EEEEEEEEEeCC--CCccCCCeEEEEecCCCCCCCCCccCCccccccccCCCcCEEEEEECCCccEEEEEECCCCCC
Confidence 357899988543 246889999988554444433221 1 1111 2 366899999999999999885
No 65
>PF14900 DUF4493: Domain of unknown function (DUF4493)
Probab=61.63 E-value=2e+02 Score=29.64 Aligned_cols=54 Identities=20% Similarity=0.377 Sum_probs=33.2
Q ss_pred ceeEEEeCCCCceEeCCccCceeEEEEEECc--eee----eeeeeeEEEEeCCceeeecceEE
Q 005706 424 YQFWTTADEDGCFSIKNIRTGNYNLYAWVPG--FVG----DYRSDALVTITSGSNIKMGDLVY 480 (682)
Q Consensus 424 yqYwt~td~~G~FtI~nVrpGtY~L~a~~~G--~~G----~~~~~~~VtV~aG~t~~lg~l~~ 480 (682)
.++|...+-. .-.| -+++|+|+|.|+... ..| .|.-+.+++|.+|+++.+. ++-
T Consensus 47 ~~~~~~~~~~-~~~i-~L~~G~Ytv~A~~g~~~~~~~d~pyy~G~~~f~I~~g~~t~v~-v~C 106 (235)
T PF14900_consen 47 VKYWKYSEMP-GESI-ELPVGSYTVKASYGDNVAAGFDKPYYEGSTTFTIEKGETTTVS-VTC 106 (235)
T ss_pred EEecchhccc-cceE-eecCCcEEEEEEcCCCccccccCceeecceeEEEecCCcEEEE-EEE
Confidence 4444444443 1223 367999999999422 112 2444668999999998773 543
No 66
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system.
Probab=56.71 E-value=2e+02 Score=31.58 Aligned_cols=31 Identities=13% Similarity=0.397 Sum_probs=27.1
Q ss_pred eCcEEEEECCeEEEEEeCCCeeEEEEEEcCe
Q 005706 62 KDHHVVLDNGILQVTLSKPGGIVTGIRYNGI 92 (682)
Q Consensus 62 ~g~~~vidNg~l~vtv~k~~G~itsi~y~G~ 92 (682)
....++|+|+.+.++|+..+|+|.++.++.-
T Consensus 72 ~~~~i~v~td~~~~~is~~Gg~i~~~~Lk~y 102 (366)
T TIGR03593 72 TAKRITVKTDVLRASISTKGGDIDSLELKKY 102 (366)
T ss_pred cCCeEEEECCeEEEEEeCCCceeeeeccccC
Confidence 4567999999999999999999999977653
No 67
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=56.29 E-value=55 Score=29.41 Aligned_cols=64 Identities=17% Similarity=0.315 Sum_probs=33.6
Q ss_pred eEEEEEEEeccCCCccccCeeEEEecCCCCCCCcccccccceeEEEeCCCCc--eEeCCccCceeEEEEEECc
Q 005706 384 GCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGC--FSIKNIRTGNYNLYAWVPG 454 (682)
Q Consensus 384 GtVsG~v~~~D~~~~~pa~~a~V~L~~~~~~gs~q~~~k~yqYwt~td~~G~--FtI~nVrpGtY~L~a~~~G 454 (682)
-+++-+|....| .|..+..|-+......+.... ... -+.||++|. +++..-++|+|++.|.+.|
T Consensus 25 ~tltatV~D~~g---npv~g~~V~f~~~~~~~~l~~--~~~--~~~Td~~G~a~~tltst~aG~~~VtA~~~~ 90 (100)
T PF02369_consen 25 NTLTATVTDANG---NPVPGQPVTFSSSSSGGTLSP--TNT--SATTDSNGIATVTLTSTKAGTYTVTATVDG 90 (100)
T ss_dssp EEEEEEEEETTS---EB-TS-EEEE--EESSSEES---CEE---EEE-TTSEEEEEEE-SS-EEEEEEEEETT
T ss_pred EEEEEEEEcCCC---CCCCCCEEEEEEcCCCcEEec--Ccc--ccEECCCEEEEEEEEecCceEEEEEEEECC
Confidence 455555554445 478888888821111111110 000 357899996 5566779999999999875
No 68
>PF09912 DUF2141: Uncharacterized protein conserved in bacteria (DUF2141); InterPro: IPR018673 This family of conserved hypothetical proteins has no known function.
Probab=48.54 E-value=40 Score=31.18 Aligned_cols=48 Identities=10% Similarity=0.169 Sum_probs=30.6
Q ss_pred eeEEEecCCCCCCCcccccccceeEEEeC---CCCceEeCCccCceeEEEEEEC
Q 005706 403 GAYVGLAPPGDVGSWQTECKDYQFWTTAD---EDGCFSIKNIRTGNYNLYAWVP 453 (682)
Q Consensus 403 ~a~V~L~~~~~~gs~q~~~k~yqYwt~td---~~G~FtI~nVrpGtY~L~a~~~ 453 (682)
.+.|.|.+..+ +|.. .+..-....+. .+-.++|++++||+|.+.++.|
T Consensus 12 ~v~v~ly~~~~--~f~~-~~~~~~~~~~~~~~~~~~~~f~~lp~G~YAi~v~hD 62 (112)
T PF09912_consen 12 QVRVALYNSAE--GFEN-KKKALKRVKVPAKGGTVTITFEDLPPGTYAIAVFHD 62 (112)
T ss_pred EEEEEEEcChh--chhh-cccceeEEEEEcCCCcEEEEECCCCCccEEEEEEEe
Confidence 47777776532 3522 22233333332 3448999999999999999864
No 69
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=47.71 E-value=35 Score=29.48 Aligned_cols=48 Identities=23% Similarity=0.221 Sum_probs=29.1
Q ss_pred EEEEEeccCCCccccCeeEEEecCCCCCCCcccccccceeEEEeCCCCceEeCCccC
Q 005706 387 SGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRT 443 (682)
Q Consensus 387 sG~v~~~D~~~~~pa~~a~V~L~~~~~~gs~q~~~k~yqYwt~td~~G~FtI~nVrp 443 (682)
+|+|.=.. .|+.++.|-|..... ....+.-=-+.||++|+|+|..-..
T Consensus 1 ~G~L~C~~----~P~~~~~V~L~e~d~-----~~~Ddll~~~~Td~~G~F~l~G~~~ 48 (80)
T PF01060_consen 1 KGQLMCGG----KPAKNVKVKLWEDDY-----FDPDDLLDETKTDSDGNFELSGSTN 48 (80)
T ss_pred CeEEEeCC----ccCCCCEEEEEECCC-----CCCCceeEEEEECCCceEEEEEEcc
Confidence 46666443 599999999954211 0112222237789999999875433
No 70
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=47.00 E-value=25 Score=44.39 Aligned_cols=68 Identities=16% Similarity=0.174 Sum_probs=46.1
Q ss_pred cEEEEEEeCCCCCCCcEEEEEEEeccCCCeEEEEEcCCCCCCCcccccccCCCCceecceeeeeeEEEEEEeeCCCeeee
Q 005706 572 TWQIKFKLDHVDRNSSYKLRVAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEG 651 (682)
Q Consensus 572 ~w~I~F~L~~~~~~~~~tLriala~a~~~~~~V~vN~~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G 651 (682)
-.+=.|.+++........|++.. ......|.|||+.++ .. .|-+..++|+|.. .|+.|
T Consensus 112 ~Yrr~F~lp~~~~gkrv~L~FeG---V~s~a~VwvNG~~VG----------~~--------~g~~~pfefDIT~-~l~~G 169 (1021)
T PRK10340 112 AYQRTFTLSDGWQGKQTIIKFDG---VETYFEVYVNGQYVG----------FS--------KGSRLTAEFDISA-MVKTG 169 (1021)
T ss_pred EEEEEEEeCcccccCcEEEEECc---cceEEEEEECCEEec----------cc--------cCCCccEEEEcch-hhCCC
Confidence 34455888765433345555543 256789999997664 11 1446778899987 67899
Q ss_pred ecEEEEEeec
Q 005706 652 ENTIFLKQPR 661 (682)
Q Consensus 652 ~NtI~lt~~~ 661 (682)
+|+|.+.+.+
T Consensus 170 ~N~LaV~V~~ 179 (1021)
T PRK10340 170 DNLLCVRVMQ 179 (1021)
T ss_pred ccEEEEEEEe
Confidence 9999999854
No 71
>PF01190 Pollen_Ole_e_I: Pollen proteins Ole e I like; InterPro: IPR006041 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ole e 1. A number of plant pollen proteins, whose biological function is not yet known, are structurally related []. These proteins are most probably secreted and consist of about 145 residues. There are six cysteines which are conserved in the sequence of these proteins. They seem to be involved in disulphide bonds.
Probab=46.16 E-value=37 Score=30.15 Aligned_cols=36 Identities=28% Similarity=0.316 Sum_probs=24.5
Q ss_pred cccCeeEEEecCCCCCCCcccccccceeEEEeCCCCceEeC
Q 005706 399 ISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIK 439 (682)
Q Consensus 399 ~pa~~a~V~L~~~~~~gs~q~~~k~yqYwt~td~~G~FtI~ 439 (682)
.|..+|.|.|.=.+..+ .......+.||++|.|.|.
T Consensus 19 ~~l~GA~V~v~C~~~~~-----~~~~~~~~~Td~~G~F~i~ 54 (97)
T PF01190_consen 19 KPLPGAKVSVECKDGNG-----GVVFSAEAKTDENGYFSIE 54 (97)
T ss_pred ccCCCCEEEEECCCCCC-----CcEEEEEEEeCCCCEEEEE
Confidence 57888999996322110 0235666889999999996
No 72
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=44.67 E-value=24 Score=34.83 Aligned_cols=60 Identities=18% Similarity=0.151 Sum_probs=31.4
Q ss_pred cEEEEEEEeccCCCeEEEEEcCCCCCCCcccccccCCCCceeccee--eeeeEEEEEEeeCCCeeeeecEEEEEeecC
Q 005706 587 SYKLRVAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGI--HGLYLLYHVNIPGTRFIEGENTIFLKQPRC 662 (682)
Q Consensus 587 ~~tLriala~a~~~~~~V~vN~~~~~~p~~~~~~~~~~~~i~R~~~--~G~~~~~~~~ipa~~L~~G~NtI~lt~~~g 662 (682)
.++|.|+ +-+.+++.|||+.+.. -+..|. +..+ +-+|..| +| +.+|++|+|+|-+.+-.|
T Consensus 5 ~A~l~is----a~g~Y~l~vNG~~V~~-~~l~P~--------~t~y~~~~~Y~ty--DV-t~~L~~G~N~iav~lg~g 66 (172)
T PF08531_consen 5 SARLYIS----ALGRYELYVNGERVGD-GPLAPG--------WTDYDKRVYYQTY--DV-TPYLRPGENVIAVWLGNG 66 (172)
T ss_dssp --EEEEE----EESEEEEEETTEEEEE-E----------------BTTEEEEEEE--E--TTT--TTEEEEEEEEEE-
T ss_pred EEEEEEE----eCeeEEEEECCEEeeC-Cccccc--------cccCCCceEEEEE--eC-hHHhCCCCCEEEEEEeCC
Confidence 3455553 4579999999986642 110111 1111 2244444 44 478999999999998653
No 73
>PF01263 Aldose_epim: Aldose 1-epimerase; InterPro: IPR008183 Aldose 1-epimerase (5.1.3.3 from EC) (mutarotase) is the enzyme responsible for the anomeric interconversion of D-glucose and other aldoses between their alpha- and beta-forms. The sequence of mutarotase from two bacteria, Acinetobacter calcoaceticus and Streptococcus thermophilus is available []. It has also been shown that, on the basis of extensive sequence similarities, a mutarotase domain seems to be present in the C-terminal half of the fungal GAL10 protein which encodes, in the N-terminal part, UDP-glucose 4-epimerase.; GO: 0016853 isomerase activity, 0005975 carbohydrate metabolic process; PDB: 1YGA_A 3DCD_A 2CIQ_A 2CIS_A 2CIR_A 2HTB_C 2HTA_B 3Q1N_A 1NSZ_B 1NSR_B ....
Probab=40.48 E-value=1.9e+02 Score=30.25 Aligned_cols=34 Identities=24% Similarity=0.419 Sum_probs=28.6
Q ss_pred cEEEEECC-eEEEEEeCCCeeEEEEEEcC--eecccc
Q 005706 64 HHVVLDNG-ILQVTLSKPGGIVTGIRYNG--IDNLLE 97 (682)
Q Consensus 64 ~~~vidNg-~l~vtv~k~~G~itsi~y~G--~enll~ 97 (682)
+.|+|.|+ .+++.|+.-+|.|+|++.+| .|-|.+
T Consensus 1 ~~itL~n~~~~~~~i~~~Ga~l~s~~~~~~~~~~l~~ 37 (300)
T PF01263_consen 1 DLITLENGNGLSAVIPEYGAELTSLQVKGNGREVLWQ 37 (300)
T ss_dssp EEEEEEETTSEEEEEETBTTEEEEEEETTTTEESB-B
T ss_pred CEEEEECCCceEEEEeccCcEEEEEEECCCCeEEecC
Confidence 35899998 89999999999999999999 664433
No 74
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=40.18 E-value=57 Score=26.16 Aligned_cols=29 Identities=28% Similarity=0.473 Sum_probs=20.5
Q ss_pred ceeEEEeCCCCceEe--CCccCceeEEEEEE
Q 005706 424 YQFWTTADEDGCFSI--KNIRTGNYNLYAWV 452 (682)
Q Consensus 424 yqYwt~td~~G~FtI--~nVrpGtY~L~a~~ 452 (682)
-.|.+.+|++|.+++ +....|+|++.+.+
T Consensus 2 ~~~~~t~~~~G~Ws~t~~~~~dG~y~itv~a 32 (54)
T PF13754_consen 2 VTYTTTVDSDGNWSFTVPALADGTYTITVTA 32 (54)
T ss_pred eEEEEEECCCCcEEEeCCCCCCccEEEEEEE
Confidence 356677888898776 44456888888765
No 75
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=39.95 E-value=34 Score=31.52 Aligned_cols=44 Identities=14% Similarity=0.104 Sum_probs=29.7
Q ss_pred CCCceEeCCccCceeEEEEEECceeeeeeeeeEEEEeCCceeee
Q 005706 432 EDGCFSIKNIRTGNYNLYAWVPGFVGDYRSDALVTITSGSNIKM 475 (682)
Q Consensus 432 ~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~~~~VtV~aG~t~~l 475 (682)
.+|.|..-.|+||+|++.+-.....+.-..+.+|+|.+|++--+
T Consensus 56 ~~g~y~~~~v~pG~h~i~~~~~~~~~~~~~~l~~~~~~G~~yy~ 99 (117)
T PF11008_consen 56 KNGGYFYVEVPPGKHTISAKSEFSSSPGANSLDVTVEAGKTYYV 99 (117)
T ss_pred CCCeEEEEEECCCcEEEEEecCccCCCCccEEEEEEcCCCEEEE
Confidence 45777777899999999995421110011456799999998544
No 76
>PF03944 Endotoxin_C: delta endotoxin; InterPro: IPR005638 This family contains insecticidal toxins produced by Bacillus species of bacteria. During spore formation the bacteria produce crystals of this protein. When an insect ingests these proteins, they are activated by proteolytic cleavage. The N terminus is cleaved in all of the proteins and a C-terminal extension is cleaved in some members. Once activated, the endotoxin binds to the gut epithelium and causes cell lysis by the formation of cation-selective channels, which leads to death. The activated region of the delta toxin is composed of three distinct structural domains: an N-terminal helical bundle domain (IPR005639 from INTERPRO) involved in membrane insertion and pore formation; a beta-sheet central domain (IPR001178 from INTERPRO) involved in receptor binding; and a C-terminal beta-sandwich domain that interacts with the N-terminal domain to form a channel [, ]. This entry represents the conserved C-terminal domain.; PDB: 1DLC_A 1JI6_A 1W99_A 1CIY_A 1I5P_A 2C9K_A 3EB7_A.
Probab=39.04 E-value=1.2e+02 Score=29.03 Aligned_cols=95 Identities=18% Similarity=0.296 Sum_probs=48.2
Q ss_pred EEEEEeCCCCCCCcEEEEEEEeccCCCeEEEEEcCCCCC--CCcccccccCCCCceecceeeeeeEEEEE-EeeCC-Cee
Q 005706 574 QIKFKLDHVDRNSSYKLRVAIASATLAELQVRVNDPNAN--RPLFTTGLIGRDNAIARHGIHGLYLLYHV-NIPGT-RFI 649 (682)
Q Consensus 574 ~I~F~L~~~~~~~~~tLriala~a~~~~~~V~vN~~~~~--~p~~~~~~~~~~~~i~R~~~~G~~~~~~~-~ipa~-~L~ 649 (682)
++++..+. .....|.+||-.|+...+++.|.+++.... .+++.|..- ... ..+.|..|.+ +++.. .+.
T Consensus 41 ~~~v~~~~-~~~~~YrIRiRYAs~~~~~~~i~~~~~~~~~~~~~~~T~~~--~~~-----~~~~y~~F~y~~~~~~~~~~ 112 (143)
T PF03944_consen 41 KIRVTINN-SSSQKYRIRIRYASNSNGTLSISINNSSGNLSFNFPSTMSN--GDN-----LTLNYESFQYVEFPTPFTFS 112 (143)
T ss_dssp EEEEEESS-SSTEEEEEEEEEEESS-EEEEEEETTEEEECEEEE--SSST--TGG-----CCETGGG-EEEEESSEEEES
T ss_pred EEEEEecC-CCCceEEEEEEEEECCCcEEEEEECCccceeeeeccccccC--CCc-----cccccceeEeeecCceEEec
Confidence 44444332 234679999999999899999999985431 011222211 111 2232222222 22221 122
Q ss_pred eee-cEEEEEeecCCCCCceEEEEEEEEe
Q 005706 650 EGE-NTIFLKQPRCTSPFQGIMYDYIRLE 677 (682)
Q Consensus 650 ~G~-NtI~lt~~~gss~f~~vmyD~IrLe 677 (682)
.+. .+|.|.+...++. ..|.-|=|++.
T Consensus 113 ~~~~~~~~i~i~~~~~~-~~v~IDkIEFI 140 (143)
T PF03944_consen 113 SNQSITITISIQNISSN-GNVYIDKIEFI 140 (143)
T ss_dssp TSEEEEEEEEEESSTTT-S-EEEEEEEEE
T ss_pred CCCceEEEEEEEecCCC-CeEEEEeEEEE
Confidence 222 5677765543332 47999999885
No 77
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=30.13 E-value=80 Score=40.02 Aligned_cols=68 Identities=13% Similarity=0.136 Sum_probs=44.6
Q ss_pred cEEEEEEeCCCCCCC-cEEEEEEEeccCCCeEEEEEcCCCCCCCcccccccCCCCceecceeeeeeEEEEEEeeCCCeee
Q 005706 572 TWQIKFKLDHVDRNS-SYKLRVAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIE 650 (682)
Q Consensus 572 ~w~I~F~L~~~~~~~-~~tLriala~a~~~~~~V~vN~~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~ 650 (682)
-.+=.|++++..... ...|++. +......|.|||+.++ --.|-+.-++|+|. ..|+.
T Consensus 123 wYrr~F~vp~~w~~~~rv~L~Fe---GV~~~a~VwvNG~~VG------------------~~~g~~~pfefDIT-~~l~~ 180 (1027)
T PRK09525 123 CYSLTFTVDESWLQSGQTRIIFD---GVNSAFHLWCNGRWVG------------------YSQDSRLPAEFDLS-PFLRA 180 (1027)
T ss_pred EEEEEEEeChhhcCCCeEEEEEC---eeccEEEEEECCEEEE------------------eecCCCceEEEECh-hhhcC
Confidence 334458886643222 3445544 2467889999997543 01245677899996 67789
Q ss_pred eecEEEEEeec
Q 005706 651 GENTIFLKQPR 661 (682)
Q Consensus 651 G~NtI~lt~~~ 661 (682)
|+|+|.+.+.+
T Consensus 181 G~N~L~V~V~~ 191 (1027)
T PRK09525 181 GENRLAVMVLR 191 (1027)
T ss_pred CccEEEEEEEe
Confidence 99999999854
No 78
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=29.94 E-value=59 Score=31.13 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=20.9
Q ss_pred CccCceeEEEEEECceeeeeeeeeEEEEeC
Q 005706 440 NIRTGNYNLYAWVPGFVGDYRSDALVTITS 469 (682)
Q Consensus 440 nVrpGtY~L~a~~~G~~G~~~~~~~VtV~a 469 (682)
.++||+|+|.+-+..-.+....+.+++|++
T Consensus 102 ~lk~G~Y~l~~~~~~~~~~W~f~k~F~It~ 131 (140)
T PF11797_consen 102 KLKPGKYTLKITAKSGKKTWTFTKDFTITA 131 (140)
T ss_pred CccCCEEEEEEEEEcCCcEEEEEEEEEECH
Confidence 799999999987644333344466677774
No 79
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=28.43 E-value=54 Score=29.08 Aligned_cols=48 Identities=31% Similarity=0.473 Sum_probs=29.6
Q ss_pred EEEEEeccCCCccccCeeEEEecCCCCCCCcccccccceeEEEeC-CCCceEeCCccCc
Q 005706 387 SGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTAD-EDGCFSIKNIRTG 444 (682)
Q Consensus 387 sG~v~~~D~~~~~pa~~a~V~L~~~~~~gs~q~~~k~yqYwt~td-~~G~FtI~nVrpG 444 (682)
+|+++..++. ..+.++.|.+.. ......|.|.... .+|.|.|.++..|
T Consensus 24 sg~~L~v~~~--~~~~g~~v~~~~--------~~~~~~Q~W~i~~~~~g~y~I~n~~s~ 72 (105)
T PF14200_consen 24 SGKYLDVAGG--STANGTNVQQWT--------CNGNDNQQWKIEPVGDGYYRIRNKNSG 72 (105)
T ss_dssp TTEEEEEGCT--TCSTTEBEEEEE--------SSSSGGGEEEEEESTTSEEEEEETSTT
T ss_pred CCCEEEeCCC--CcCCCcEEEEec--------CCCCcCcEEEEEEecCCeEEEEECCCC
Confidence 4555544432 234566677642 2236788896664 6788999888665
No 80
>PF07550 DUF1533: Protein of unknown function (DUF1533); InterPro: IPR011432 This domain is found duplicated in proteins of unknown function. The proteins typically also contain leucine-rich repeats.
Probab=28.20 E-value=45 Score=27.79 Aligned_cols=19 Identities=42% Similarity=0.726 Sum_probs=16.9
Q ss_pred EEeeCCCe-eeeecEEEEEe
Q 005706 641 VNIPGTRF-IEGENTIFLKQ 659 (682)
Q Consensus 641 ~~ipa~~L-~~G~NtI~lt~ 659 (682)
+.|.++.| +.|+|+|+|.-
T Consensus 36 l~i~~~~f~~~G~~~I~I~A 55 (65)
T PF07550_consen 36 LKIKASAFNKDGENTIVIKA 55 (65)
T ss_pred EEEcHHHcCcCCceEEEEEe
Confidence 88899999 78999999983
No 81
>PRK13211 N-acetylglucosamine-binding protein A; Reviewed
Probab=28.09 E-value=2.5e+02 Score=32.65 Aligned_cols=66 Identities=9% Similarity=0.091 Sum_probs=43.7
Q ss_pred CCCCCCCCCeEEEEEEEeccCCCccccCeeEEEecCCCCCCCcccccccceeEEEeCCCCceEeC--CccCceeEEEEEE
Q 005706 375 EDFQKSEERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIK--NIRTGNYNLYAWV 452 (682)
Q Consensus 375 ~~y~~~~qRGtVsG~v~~~D~~~~~pa~~a~V~L~~~~~~gs~q~~~k~yqYwt~td~~G~FtI~--nVrpGtY~L~a~~ 452 (682)
++|.-..+..+|.=+|... ....+.+-|.+... +.++++--+..|..-.|+|+ ++++|.|+|.+.+
T Consensus 320 ~eY~I~dG~~~i~ftv~a~------g~~~vta~V~d~~g------~~~~~~~~~v~d~s~~vtL~Ls~~~AG~y~Lvv~~ 387 (478)
T PRK13211 320 KEYKIGDGAATLDFTVTAT------GDMNVEATVYNHDG------EALGSKSQTVNDGSQSVSLDLSKLKAGHHMLVVKA 387 (478)
T ss_pred ceeEEcCCcEEEEEEEEec------cceEEEEEEEcCCC------CeeeeeeEEecCCceeEEEecccCCCceEEEEEEE
Confidence 8899887777777766654 34577777765321 23444444444555567765 8999999999975
No 82
>PF12866 DUF3823: Protein of unknown function (DUF3823); InterPro: IPR024278 This is a family of uncharacterised proteins from Bacteroidetes. These proteins have characteristic DN and DR sequence-motifs but their function is not known.; PDB: 3HN5_B 4EIU_A.
Probab=25.22 E-value=3e+02 Score=28.70 Aligned_cols=61 Identities=18% Similarity=0.329 Sum_probs=37.8
Q ss_pred CeEEEEEEEecc-CCCc-cccCeeEEEecCCCCCCCcccccccceeEEEeCCCCceEeCCccCceeEEEE
Q 005706 383 RGCVSGRLLVQD-SNDV-ISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYA 450 (682)
Q Consensus 383 RGtVsG~v~~~D-~~~~-~pa~~a~V~L~~~~~~gs~q~~~k~yqYwt~td~~G~FtI~nVrpGtY~L~a 450 (682)
-++++|+|.... |+.. ....++-+-|.+.| |.. .+.|.+ ....+|.|.-..+=+|+|+|..
T Consensus 21 ~s~l~G~iiD~~tgE~i~~~~~gv~i~l~e~g----y~~--~~~~~~-~v~qDGtf~n~~lF~G~Yki~~ 83 (222)
T PF12866_consen 21 DSTLTGRIIDVYTGEPIQTDIGGVRIQLYELG----YGD--NTPQDV-YVKQDGTFRNTKLFDGDYKIVP 83 (222)
T ss_dssp -EEEEEEEEECCTTEE----STSSEEEEECS-----CCG----SEEE-EB-TTSEEEEEEE-SEEEEEEE
T ss_pred CceEEEEEEEeecCCeeeecCCceEEEEEecc----ccc--CCCcce-EEccCCceeeeeEeccceEEEE
Confidence 489999996433 3211 11247888886643 553 244444 3778999988899999999998
No 83
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=24.70 E-value=3.6e+02 Score=23.54 Aligned_cols=65 Identities=15% Similarity=0.164 Sum_probs=37.8
Q ss_pred CeEEEEEEEeccCCCccccCeeEEEecCCCCCCCcccccccceeEEEeCCCCce--EeCCccCceeEEEEEECce
Q 005706 383 RGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCF--SIKNIRTGNYNLYAWVPGF 455 (682)
Q Consensus 383 RGtVsG~v~~~D~~~~~pa~~a~V~L~~~~~~gs~q~~~k~yqYwt~td~~G~F--tI~nVrpGtY~L~a~~~G~ 455 (682)
...|+=+|...+|+ |..+..|.+.-.+.. .....+ . ...+|++|.. .+..-++|++++++...|.
T Consensus 19 ~~~i~v~v~D~~Gn---pv~~~~V~f~~~~~~-~~~~~~--~--~~~Td~~G~a~~~l~~~~~G~~~vta~~~~~ 85 (92)
T smart00634 19 AITLTATVTDANGN---PVAGQEVTFTTPSGG-ALTLSK--G--TATTDANGIATVTLTSTTAGVYTVTASLENG 85 (92)
T ss_pred cEEEEEEEECCCCC---CcCCCEEEEEECCCc-eeeccC--C--eeeeCCCCEEEEEEECCCCcEEEEEEEECCC
Confidence 46676677655564 555666666533221 111111 1 2368889964 4455678999999987764
No 84
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=24.44 E-value=2.3e+02 Score=25.28 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=25.6
Q ss_pred CeeEEEecCCCCCCCcccccccceeEEEeCCCCceEeCCcc-----CceeEEEEEE
Q 005706 402 NGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIR-----TGNYNLYAWV 452 (682)
Q Consensus 402 ~~a~V~L~~~~~~gs~q~~~k~yqYwt~td~~G~FtI~nVr-----pGtY~L~a~~ 452 (682)
.++.|.|+. .+--|..-.-++|+++|+ +. +|+|+|++-.
T Consensus 26 ~gs~ValS~-----------dg~l~G~ai~~sG~ati~-l~~~it~~~~~tlTit~ 69 (81)
T PF03785_consen 26 PGSYVALSQ-----------DGDLYGKAIVNSGNATIN-LTNPITDEGTLTLTITA 69 (81)
T ss_dssp TT-EEEEEE-----------TTEEEEEEE-BTTEEEEE--SS--TT-SEEEEEEE-
T ss_pred CCcEEEEec-----------CCEEEEEEEecCceEEEE-CCcccCCCceEEEEEEE
Confidence 468888875 456777555449999995 55 6889999865
No 85
>PRK10150 beta-D-glucuronidase; Provisional
Probab=23.38 E-value=1.4e+02 Score=35.33 Aligned_cols=65 Identities=17% Similarity=0.102 Sum_probs=41.4
Q ss_pred EEEEEeCCCCCCCcEEEEEEEeccCCCeEEEEEcCCCCCCCcccccccCCCCceecceeeeeeEEEEEEeeCCCeeeeec
Q 005706 574 QIKFKLDHVDRNSSYKLRVAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGEN 653 (682)
Q Consensus 574 ~I~F~L~~~~~~~~~tLriala~a~~~~~~V~vN~~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~N 653 (682)
+=+|++++........|++.. ....-+|.|||+.++ .-.|-+..++|+|.. .|+.|+|
T Consensus 70 rr~f~lp~~~~gk~v~L~Feg---v~~~a~V~lNG~~vg------------------~~~~~~~~f~~DIT~-~l~~G~~ 127 (604)
T PRK10150 70 QREVFIPKGWAGQRIVLRFGS---VTHYAKVWVNGQEVM------------------EHKGGYTPFEADITP-YVYAGKS 127 (604)
T ss_pred EEEEECCcccCCCEEEEEECc---ccceEEEEECCEEee------------------eEcCCccceEEeCch-hccCCCc
Confidence 445888654323334455432 345668999997553 112456778999975 5678864
Q ss_pred -EEEEEee
Q 005706 654 -TIFLKQP 660 (682)
Q Consensus 654 -tI~lt~~ 660 (682)
+|.+.+.
T Consensus 128 n~L~V~v~ 135 (604)
T PRK10150 128 VRITVCVN 135 (604)
T ss_pred eEEEEEEe
Confidence 9999984
No 86
>PF13313 DUF4082: Domain of unknown function (DUF4082)
Probab=22.48 E-value=5.1e+02 Score=25.56 Aligned_cols=80 Identities=21% Similarity=0.406 Sum_probs=46.9
Q ss_pred EEEEEeCCCeeEEEEEE-cCeecccccccCCCcceeeEEEeCCCCCCCceeeeccceEEEEEe-cCCEEEEEEEEeecCC
Q 005706 73 LQVTLSKPGGIVTGIRY-NGIDNLLEFRNKETNRGYWDLMWNPPGGKGMFDVISGTSFRVVVE-NEEQVELSFLRTWASS 150 (682)
Q Consensus 73 l~vtv~k~~G~itsi~y-~G~enll~~~~~~~~~gY~D~~w~~~g~~g~~~~~~gt~~~vi~~-~~~~i~Vs~~~~~~~s 150 (682)
+.|+.+. .|.|++|+| +|. .+..+|.|-+ |+..|. ++. +.++..+ ...+-.+.|...
T Consensus 23 ~kF~~~~-~G~vtgvrfYk~~------~ntgthtgsL---Wsa~G~------lLA-t~tft~etasGWQt~~f~~P---- 81 (149)
T PF13313_consen 23 VKFRSSV-AGQVTGVRFYKGA------GNTGTHTGSL---WSADGT------LLA-TATFTNETASGWQTVTFSTP---- 81 (149)
T ss_pred eEEEecC-CcEEEEEEEEeCC------CCCCceEEEE---ECCCCC------EEE-EEEEcCCCCCceEEEeccCC----
Confidence 6677654 899999984 553 3456788844 765433 122 2232333 346888888764
Q ss_pred CCCCcccceeeEEEEEecCCc-eeEEEEE
Q 005706 151 HEGNYIPLNIDKRFIMLRGSS-GFYSYAI 178 (682)
Q Consensus 151 ~~g~~~~l~l~~~~v~r~G~s-giY~y~~ 178 (682)
+.+.--+-||+--..+ |.|.+..
T Consensus 82 -----V~v~AgttYVvSY~a~~G~Ys~~~ 105 (149)
T PF13313_consen 82 -----VAVTAGTTYVVSYHAPSGHYSATS 105 (149)
T ss_pred -----eEEcCCCeEEEEEECCCCcEeEcC
Confidence 4444445556554444 7886554
No 87
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=21.64 E-value=2e+02 Score=35.46 Aligned_cols=63 Identities=17% Similarity=0.309 Sum_probs=43.8
Q ss_pred ccCccccccEEEEEeCcEEEEE---CCeEEEEEeCCCeeEEEEEEc--CeecccccccCCCcceeeEEE
Q 005706 48 TWPAMPTQAVRLHIKDHHVVLD---NGILQVTLSKPGGIVTGIRYN--GIDNLLEFRNKETNRGYWDLM 111 (682)
Q Consensus 48 ~~~~~~~a~~~~~~~g~~~vid---Ng~l~vtv~k~~G~itsi~y~--G~enll~~~~~~~~~gY~D~~ 111 (682)
+-++.+.-.|.+-.-+..|+|= .|.+-++|-.+-|.||+|.++ |.- +|....+..+++.||+.
T Consensus 208 ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p-~las~~~~G~m~~wDLe 275 (910)
T KOG1539|consen 208 IEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNP-LLASGRSNGDMAFWDLE 275 (910)
T ss_pred eccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCe-eEEeccCCceEEEEEcC
Confidence 3344444444444445566654 476778887778999999999 864 66666777778999986
No 88
>PRK01318 membrane protein insertase; Provisional
Probab=21.43 E-value=1.1e+03 Score=27.69 Aligned_cols=28 Identities=11% Similarity=0.443 Sum_probs=25.8
Q ss_pred EEEEECCeEEEEEeCCCeeEEEEEEcCe
Q 005706 65 HVVLDNGILQVTLSKPGGIVTGIRYNGI 92 (682)
Q Consensus 65 ~~vidNg~l~vtv~k~~G~itsi~y~G~ 92 (682)
.++|+|+.++++|+..+|+|.++..+.-
T Consensus 40 ~i~v~td~~~~~is~~Gg~i~~~~Lk~y 67 (521)
T PRK01318 40 RITVETDVLRLSIDTKGGRIDDLLLKKY 67 (521)
T ss_pred EEEEEcCcEEEEEECCCCeeeeeeccCC
Confidence 7999999999999999999999988754
No 89
>PF04571 Lipin_N: lipin, N-terminal conserved region; InterPro: IPR007651 Mutations in the lipin gene lead to fatty liver dystrophy in mice. The protein has been shown to be phosphorylated by the TOR Ser/Thr protein kinases in response to insulin stimulation. This entry represents a conserved domain found at the N terminus of the member proteins [, ].
Probab=20.32 E-value=1.5e+02 Score=27.90 Aligned_cols=38 Identities=13% Similarity=0.315 Sum_probs=27.8
Q ss_pred ecCCcccCcccEEEEEEeCCCCCCCcEEEEEEEeccCCCeEEEEEcCCCC
Q 005706 562 EMDNKTYQGTTWQIKFKLDHVDRNSSYKLRVAIASATLAELQVRVNDPNA 611 (682)
Q Consensus 562 ~~~~~~~~~~~w~I~F~L~~~~~~~~~tLriala~a~~~~~~V~vN~~~~ 611 (682)
+.+||+++.++|.++|-= | .+-......++|.|||+.+
T Consensus 34 ~q~DGs~~sSPFhVRFGk----------~--~vl~~~ek~V~I~VNG~~~ 71 (110)
T PF04571_consen 34 EQPDGSLKSSPFHVRFGK----------L--GVLRPREKVVDIEVNGKPV 71 (110)
T ss_pred ecCCCCEecCccEEEEcc----------e--eeecccCcEEEEEECCEEc
Confidence 367899999999999971 1 2333445678999999754
Done!