Your job contains 1 sequence.
>005707
MTPVIPCSISSISSIPVTAFTIKKNNCLTRYNSTRKSTKQTISSQRFLLPLPSSVRFFSQ
FQSGSALQHKSALHIISATGINVAVEESDSPAADDDSAGASDIPSDVETSESSSIKSEAS
PTLAESRRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRL
SDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRT
TRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGF
ANMMGGSSLQVGQEVSVRVLRISRGQVTLTMKKEDDVGSNLQLTQGVIHAATNPFVLAFR
SNKDISSFLDERDKSATAAKKSEKPTPIEIGGEVSQMEAGSSIPKVQDQPTSSDDGMASV
PSAVGETVEDHEAPSKEKGELADIANRNDDPQNVMSGSSETLDGALQTIEKETEETTLNQ
TIEETPSTDVSGELAEQALSTDGPKAGEFTESQTEDTIAKDEVQILTPATEEKETKDTTE
ALAPEGSVSTEKQIIGEAASTNLSGEIAEQVSVSDSPKDEEVVQNQTDDVIAKDEEQIQT
PTTESEIPSAGSLKEKESGPIPDKNGSITSSGEEPDVSSSQKTKGFKLGFLFFQSFSFNS
CFYNFCLRNLYFSVQNVNLKP
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 005707
(681 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2119946 - symbol:emb2726 "embryo defective 272... 947 6.0e-99 2
UNIPROTKB|Q5LKS3 - symbol:Q5LKS3 "S1 RNA binding domain p... 203 1.1e-12 1
TIGR_CMR|SPO_A0306 - symbol:SPO_A0306 "S1 RNA binding dom... 203 1.1e-12 1
UNIPROTKB|Q71X59 - symbol:LMOf2365_2340 "S1 RNA binding d... 178 1.1e-12 1
TIGR_CMR|CPS_4965 - symbol:CPS_4965 "putative transcripti... 202 1.5e-12 1
TIGR_CMR|CBU_0528 - symbol:CBU_0528 "ribosomal protein S1... 136 6.8e-12 3
UNIPROTKB|Q724J5 - symbol:LMOf2365_0229 "RNA-binding prot... 163 4.5e-11 1
UNIPROTKB|Q8E8N3 - symbol:tex "Transcriptional accessory ... 188 4.9e-11 1
TIGR_CMR|SO_4629 - symbol:SO_4629 "conserved hypothetical... 188 4.9e-11 1
UNIPROTKB|Q60A39 - symbol:MCA1032 "S1 RNA binding domain ... 186 7.3e-11 1
UNIPROTKB|P46837 - symbol:yhgF "predicted transcriptional... 185 1.0e-10 1
UNIPROTKB|Q9KNL6 - symbol:VC_2716 "Putative uncharacteriz... 184 1.3e-10 1
TIGR_CMR|VC_2716 - symbol:VC_2716 "conserved hypothetical... 184 1.3e-10 1
TIGR_CMR|CPS_2335 - symbol:CPS_2335 "ribosomal protein S1... 134 1.8e-10 2
UNIPROTKB|Q0BZL2 - symbol:HNE_2386 "S1 RNA binding domain... 180 3.5e-10 1
UNIPROTKB|Q9KQT3 - symbol:VC_1915 "30S ribosomal protein ... 125 4.2e-10 2
TIGR_CMR|VC_1915 - symbol:VC_1915 "ribosomal protein S1" ... 125 4.2e-10 2
UNIPROTKB|Q88AQ9 - symbol:PSPTO_0327 "S1 RNA binding doma... 179 4.6e-10 1
UNIPROTKB|Q81VX9 - symbol:BAS0060 "S1 RNA binding domain ... 152 6.9e-10 1
TIGR_CMR|BA_0060 - symbol:BA_0060 "S1 RNA binding domain ... 152 6.9e-10 1
TIGR_CMR|BA_5132 - symbol:BA_5132 "general stress protein... 152 6.9e-10 1
UNIPROTKB|P0AG67 - symbol:rpsA "30S ribosomal subunit pro... 128 1.0e-09 2
TIGR_CMR|SO_2402 - symbol:SO_2402 "ribosomal protein S1" ... 130 1.2e-09 2
UNIPROTKB|Q721R8 - symbol:LMOf2365_0917 "S1 RNA binding d... 172 2.4e-09 1
UNIPROTKB|Q74GL1 - symbol:tex "S1 RNA-binding domain-cont... 172 2.6e-09 1
TIGR_CMR|GSU_0235 - symbol:GSU_0235 "S1 RNA binding domai... 172 2.6e-09 1
UNIPROTKB|Q81VF3 - symbol:BA_0255 "S1 RNA binding domain ... 166 1.1e-08 1
TIGR_CMR|BA_0255 - symbol:BA_0255 "S1 RNA binding domain ... 166 1.1e-08 1
UNIPROTKB|P05055 - symbol:pnp "polynucleotide phosphoryla... 157 1.0e-07 1
TAIR|locus:2095203 - symbol:AT3G23700 species:3702 "Arabi... 152 1.3e-07 1
CGD|CAL0005606 - symbol:orf19.1578 species:5476 "Candida ... 119 1.6e-07 3
FB|FBgn0036203 - symbol:Muc68D "Mucin 68D" species:7227 "... 158 2.0e-07 1
TIGR_CMR|CPS_2207 - symbol:CPS_2207 "polyribonucleotide n... 153 2.7e-07 1
TIGR_CMR|CJE_0972 - symbol:CJE_0972 "ribosomal protein S1... 125 4.4e-07 2
TIGR_CMR|DET_0970 - symbol:DET_0970 "polyribonucleotide n... 151 4.5e-07 1
UNIPROTKB|Q9KU76 - symbol:pnp "Polyribonucleotide nucleot... 150 5.7e-07 1
TIGR_CMR|VC_0647 - symbol:VC_0647 "polyribonucleotide nuc... 150 5.7e-07 1
TIGR_CMR|BA_1519 - symbol:BA_1519 "ribosomal protein S1" ... 145 7.2e-07 1
TAIR|locus:2145860 - symbol:RPS1 "ribosomal protein S1" s... 144 1.1e-06 1
CGD|CAL0003874 - symbol:PGA55 species:5476 "Candida albic... 149 1.7e-06 1
UNIPROTKB|Q59SG9 - symbol:PGA55 "Flocculin-like protein" ... 149 1.7e-06 1
UNIPROTKB|F1S843 - symbol:LOC100157027 "Uncharacterized p... 125 1.9e-06 4
TIGR_CMR|GSU_2603 - symbol:GSU_2603 "ribosomal protein S1... 119 2.0e-06 2
TIGR_CMR|GSU_1200 - symbol:GSU_1200 "ribosomal protein S1... 141 2.2e-06 1
WB|WBGene00003393 - symbol:mog-5 species:6239 "Caenorhabd... 158 3.1e-06 2
UNIPROTKB|Q09530 - symbol:mog-5 "Probable pre-mRNA-splici... 158 3.1e-06 2
TIGR_CMR|SPO_0802 - symbol:SPO_0802 "ribosomal protein S1... 145 4.1e-06 2
FB|FBgn0086895 - symbol:pea "peanuts" species:7227 "Droso... 149 4.7e-06 2
SGD|S000000815 - symbol:PRP22 "DEAH-box RNA-dependent ATP... 144 4.7e-06 1
UNIPROTKB|Q3IJ73 - symbol:pnp "Polyribonucleotide nucleot... 141 5.4e-06 1
ASPGD|ASPL0000042752 - symbol:rrp5 species:162425 "Emeric... 141 5.6e-06 3
UNIPROTKB|O06147 - symbol:rpsA "30S ribosomal protein S1"... 137 8.3e-06 1
TIGR_CMR|ECH_0402 - symbol:ECH_0402 "putative ribosomal p... 109 8.6e-06 2
ASPGD|ASPL0000069336 - symbol:AN7262 species:162425 "Emer... 143 8.9e-06 1
TIGR_CMR|BA_3944 - symbol:BA_3944 "polyribonucleotide nuc... 138 1.2e-05 1
TIGR_CMR|SPO_3389 - symbol:SPO_3389 "polyribonucleotide n... 138 1.2e-05 1
FB|FBgn0003137 - symbol:Ppn "Papilin" species:7227 "Droso... 143 1.7e-05 1
CGD|CAL0000304 - symbol:HYR3 species:5476 "Candida albica... 138 2.3e-05 1
UNIPROTKB|Q59XA7 - symbol:HYR3 "Possible cell wall protei... 138 2.3e-05 1
TIGR_CMR|APH_0273 - symbol:APH_0273 "ribosomal protein S1... 107 2.5e-05 2
UNIPROTKB|F1S842 - symbol:LOC100157027 "Uncharacterized p... 125 3.0e-05 3
TIGR_CMR|SO_1209 - symbol:SO_1209 "polyribonucleotide nuc... 134 3.1e-05 1
UNIPROTKB|A7MB10 - symbol:PDCD11 "Protein RRP5 homolog" s... 114 3.2e-05 4
UNIPROTKB|G5E5C4 - symbol:PDCD11 "Protein RRP5 homolog" s... 114 3.2e-05 4
TIGR_CMR|NSE_0408 - symbol:NSE_0408 "ribosomal protein S1... 122 3.6e-05 2
UNIPROTKB|Q939N5 - symbol:gspB "Platelet binding protein ... 140 3.9e-05 1
UNIPROTKB|P50849 - symbol:pnp "Polyribonucleotide nucleot... 133 4.0e-05 1
GENEDB_PFALCIPARUM|PFB0915w - symbol:PFB0915w "liver stag... 145 4.2e-05 2
UNIPROTKB|O96275 - symbol:PFB0915w "Liver stage antigen 3... 145 4.2e-05 2
UNIPROTKB|F1PGL8 - symbol:AKAP12 "Uncharacterized protein... 137 5.9e-05 2
POMBASE|SPAC10F6.02c - symbol:prp22 "ATP-dependent RNA he... 133 7.5e-05 1
SGD|S000005535 - symbol:TIR4 "Cell wall mannoprotein of t... 128 8.1e-05 1
TAIR|locus:2079429 - symbol:RIF10 "AT3G03710" species:370... 131 9.2e-05 1
WB|WBGene00009391 - symbol:F35C5.3 species:6239 "Caenorha... 125 0.00012 1
TIGR_CMR|ECH_0726 - symbol:ECH_0726 "polyribonucleotide n... 133 0.00013 2
TIGR_CMR|NSE_0057 - symbol:NSE_0057 "polyribonucleotide n... 128 0.00015 1
ZFIN|ZDB-GENE-081015-2 - symbol:rpgrb "retinitis pigmento... 131 0.00015 1
POMBASE|SPBC1711.05 - symbol:SPBC1711.05 "nucleocytoplasm... 125 0.00015 1
UNIPROTKB|Q485L6 - symbol:CPS_1507 "Putative flagellar ho... 127 0.00016 1
TIGR_CMR|CPS_1507 - symbol:CPS_1507 "putative flagellar h... 127 0.00016 1
TAIR|locus:504955937 - symbol:AT2G22795 "AT2G22795" speci... 127 0.00019 1
RGD|1304762 - symbol:Iws1 "IWS1 homolog (S. cerevisiae)" ... 127 0.00020 1
UNIPROTKB|Q3SWT4 - symbol:Iws1 "Protein IWS1 homolog" spe... 127 0.00020 1
TAIR|locus:2088644 - symbol:RRP5 "Ribosomal RNA Processin... 131 0.00021 1
FB|FBgn0039470 - symbol:CG6296 species:7227 "Drosophila m... 126 0.00022 1
UNIPROTKB|Q5SSG8 - symbol:MUC21 "Mucin-21" species:9606 "... 125 0.00022 1
TIGR_CMR|CBU_0852 - symbol:CBU_0852 "polyribonucleotide n... 126 0.00022 1
TIGR_CMR|GSU_1593 - symbol:GSU_1593 "polyribonucleotide n... 126 0.00022 1
UNIPROTKB|E9PTW3 - symbol:Dspp "Dentin sialophosphoprotei... 127 0.00026 1
TAIR|locus:2183750 - symbol:AT5G10950 "AT5G10950" species... 122 0.00026 1
CGD|CAL0004905 - symbol:IFF6 species:5476 "Candida albica... 137 0.00026 2
UNIPROTKB|Q59XL0 - symbol:IFF6 "Putative uncharacterized ... 137 0.00026 2
UNIPROTKB|Q86VQ3 - symbol:TXNDC2 "Thioredoxin domain-cont... 124 0.00027 1
FB|FBgn0260430 - symbol:CG42525 species:7227 "Drosophila ... 122 0.00029 1
FB|FBgn0037836 - symbol:CG14692 species:7227 "Drosophila ... 131 0.00032 1
RGD|1304933 - symbol:Pdcd11 "programmed cell death 11" sp... 113 0.00033 3
CGD|CAL0000295 - symbol:IFF8 species:5476 "Candida albica... 124 0.00038 1
UNIPROTKB|Q59XB0 - symbol:IFF8 "Putative uncharacterized ... 124 0.00038 1
UNIPROTKB|Q14690 - symbol:PDCD11 "Protein RRP5 homolog" s... 105 0.00041 4
SGD|S000004936 - symbol:YMR317W "Putative protein of unkn... 133 0.00049 2
WARNING: Descriptions of 14 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2119946 [details] [associations]
symbol:emb2726 "embryo defective 2726" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003746 "translation elongation factor activity"
evidence=IEA;ISS] [GO:0006414 "translational elongation"
evidence=IEA;ISS] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA] [GO:0046686
"response to cadmium ion" evidence=IEP;RCA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009902 "chloroplast
relocation" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0016117 "carotenoid biosynthetic
process" evidence=RCA] [GO:0019288 "isopentenyl diphosphate
biosynthetic process, mevalonate-independent pathway" evidence=RCA]
[GO:0034660 "ncRNA metabolic process" evidence=RCA] [GO:0042744
"hydrogen peroxide catabolic process" evidence=RCA] HAMAP:MF_00050
InterPro:IPR000449 InterPro:IPR001816 InterPro:IPR003029
InterPro:IPR009060 InterPro:IPR014039 InterPro:IPR018101
Pfam:PF00575 Pfam:PF00627 Pfam:PF00889 PROSITE:PS01126
PROSITE:PS01127 PROSITE:PS50126 GO:GO:0046686 GO:GO:0009570
EMBL:CP002687 EMBL:AL078470 EMBL:AL161574 GO:GO:0009941
GO:GO:0003746 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
SUPFAM:SSF46934 InterPro:IPR022967 SMART:SM00316 KO:K02357
Gene3D:3.30.479.20 PANTHER:PTHR11741 SUPFAM:SSF54713
TIGRFAMs:TIGR00116 HSSP:P43895 EMBL:AY056792 IPI:IPI00541725
PIR:T08961 RefSeq:NP_567820.1 UniGene:At.21764
ProteinModelPortal:Q9SZD6 SMR:Q9SZD6 STRING:Q9SZD6 PRIDE:Q9SZD6
ProMEX:Q9SZD6 EnsemblPlants:AT4G29060.1 GeneID:829027
KEGG:ath:AT4G29060 TAIR:At4g29060 HOGENOM:HOG000244107
InParanoid:Q9SZD6 OMA:DDLAMQV PhylomeDB:Q9SZD6
Genevestigator:Q9SZD6 Uniprot:Q9SZD6
Length = 953
Score = 947 (338.4 bits), Expect = 6.0e-99, Sum P(2) = 6.0e-99
Identities = 231/544 (42%), Positives = 314/544 (57%)
Query: 1 MTPVIPCXXXXXXXXPVTAFTIKKNNCLTRYNSTRKSTKQTISS-QRFLLPLPSSVRFFS 59
M + P P +FT+KK++C + + +RK+ KQ +SS QR +LPL +S+R F
Sbjct: 1 MATITPSSISNAWLIPGASFTVKKSDCSIKCSFSRKAGKQILSSTQRLVLPLSTSLRLFP 60
Query: 60 QFQSGSALQ-HKSALHIISATGINVAVEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 118
L H+ A + T + AVEE
Sbjct: 61 THGRQFVLHPHRRA----TGTDVVAAVEEQDSTPVVAEDKETVASEKSDAPA-------- 108
Query: 119 XXPTLAESRRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVS 178
PT +R RKSEMP VKNE+L+PGATFTGKVR+IQPFGAF+DFGAFTDGLVHVS
Sbjct: 109 --PTSQSRGTARPGRKSEMPAVKNEELVPGATFTGKVRAIQPFGAFVDFGAFTDGLVHVS 166
Query: 179 RLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQ-KDATASGDK 237
+LSDNFVKDV S+V++GQEVKVRL+EA+ E+ RISLTMRE+DD K Q D SG K
Sbjct: 167 QLSDNFVKDVSSVVTIGQEVKVRLVEADIESKRISLTMRENDDPPKRQSGGSDKPRSGGK 226
Query: 238 VRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESD 297
R + GQ++ E +KF KGQ L+G VKNLTRSGAFI++ EGEEGFLPT+EE+D
Sbjct: 227 ----RDGSKGGGQRKGEGFNSKFAKGQMLDGVVKNLTRSGAFITIGEGEEGFLPTAEEAD 282
Query: 298 DGFANMM-GGSSLQVGQEVSVRVLRISRGQVTLTMKKEDDVGSNLQLTQGVIHAATNPFV 356
DG +MM GGSSLQ GQEV VRVLRI+RG+VTLTMK+EDD + TQGV+H ATNPF+
Sbjct: 283 DGIGSMMMGGSSLQAGQEVKVRVLRIARGRVTLTMKEEDDGKFDETTTQGVVHTATNPFM 342
Query: 357 LAFRSNKDISSFLDERDKSATAAKKSEKPTPIEIGGEVS----QMEAGSSIP-KVQDQPT 411
LAFR N++I++FLD+R++ A +K TP+E E S ++E +P +V +
Sbjct: 343 LAFRKNEEIAAFLDKREEEA---EKPPVETPVEPEAEASVTSAEVEESVCVPAEVTSEEV 399
Query: 412 SSDDGMASVPSAVGETVEDHEAPSKEKGE--LADIANRND--DPQNVMSGSSETLDGALQ 467
S + V V T + ++P KE+ LA A + P E ++ ++
Sbjct: 400 PSSETPKVVEEEVIATKAEDDSPEKEEQTETLAAAAEAEEVVPPIPETKSEEEIVENSIP 459
Query: 468 TIEKETEETTLNQTI--EETPSTDVSGELAEQALSTDGPKAGEFTESQTEDTIAKDEVQI 525
T+E + + + EE V E + T P E + ++ +T + ++
Sbjct: 460 P-NSATDEVSSPEALASEEVEKEQVVAETPVDEVKTPAPVVTEASSEESGNTATAESIKG 518
Query: 526 LTPA 529
++PA
Sbjct: 519 ISPA 522
Score = 55 (24.4 bits), Expect = 6.0e-99, Sum P(2) = 6.0e-99
Identities = 14/60 (23%), Positives = 32/60 (53%)
Query: 552 KQIIGEAASTNLSGEIAEQVSVSDSPKD----EEVVQNQTDDVIAKDEEQIQTPTTESEI 607
K+++ + A ++ + VS+ D P++ E+ ++ Q +D+++K E I+ E I
Sbjct: 844 KELVDDLAMQAVANPQVQYVSIEDIPEEIKQKEKEIEMQREDLLSKPEN-IREKIVEGRI 902
Score = 50 (22.7 bits), Expect = 2.0e-98, Sum P(2) = 2.0e-98
Identities = 28/130 (21%), Positives = 49/130 (37%)
Query: 494 LAEQALSTDGPKAGEFTESQTEDTIAKDEVQILTP-AXXXXXXXXXXXALAPEGSVSTEK 552
L + +S + K + E Q ED ++K E QI AL + + +K
Sbjct: 625 LVTEDVSEEIVKKEKEIEMQKEDLLSKPE-QIREKIVDGRIKKRLDSLALLEQPYIKDDK 683
Query: 553 QIIGEAASTNLSGEIAEQVSVSDSPKDE--EVVQNQTDDVIAKDEEQIQTPTTESEIPSA 610
I+ + ++ I E + V + E ++ ++ D A+ Q E P A
Sbjct: 684 VIVKDLVKQRIA-TIGENIKVKRFVRYTLGEGLEKKSQDFAAEVAAQTAAKPKAKEEPKA 742
Query: 611 GSLKEKESGP 620
KE + P
Sbjct: 743 EEAKEAVASP 752
Score = 43 (20.2 bits), Expect = 1.1e-97, Sum P(2) = 1.1e-97
Identities = 19/86 (22%), Positives = 35/86 (40%)
Query: 557 EAASTNLSGEIAEQVSVSDSPKDEEVVQNQTDDVIAKDEEQIQTPTTESEIPSAGSLKEK 616
E S + + E+A Q + K+E + AK E PTT L+E+
Sbjct: 716 EKKSQDFAAEVAAQTAAKPKAKEEPKAEE------AK-EAVASPPTTVVSAALVKQLREE 768
Query: 617 ESGPIPDKNGSITSSGEEPDVSSSQK 642
+ D ++ ++G D+ +Q+
Sbjct: 769 TGAGMMDCKKALAATGG--DLEKAQE 792
>UNIPROTKB|Q5LKS3 [details] [associations]
symbol:Q5LKS3 "S1 RNA binding domain protein"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003029
InterPro:IPR003583 InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126
SMART:SM00278 SMART:SM00732 GO:GO:0003677 GO:GO:0006281
GO:GO:0003723 GO:GO:0016788 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 EMBL:CP000032 GenomeReviews:CP000032_GR
InterPro:IPR022967 SMART:SM00316 Gene3D:3.30.420.140
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT
Gene3D:1.10.10.650 InterPro:IPR023319 HOGENOM:HOG000270497
KO:K06959 RefSeq:YP_165135.1 ProteinModelPortal:Q5LKS3 SMR:Q5LKS3
GeneID:3196926 KEGG:sil:SPOA0306 PATRIC:23381958
ProtClustDB:CLSK2308454 Uniprot:Q5LKS3
Length = 765
Score = 203 (76.5 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 43/99 (43%), Positives = 60/99 (60%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVHVS+L+D FVKD +V GQ +KV +
Sbjct: 641 DLRPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKTGQVIKVTVT 700
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTR 242
E + RI L+MR+ D + +Q+K A + G + R+ R
Sbjct: 701 EIDVPRKRIGLSMRK-DGGASARQEKPARSGGPRDRSPR 738
>TIGR_CMR|SPO_A0306 [details] [associations]
symbol:SPO_A0306 "S1 RNA binding domain protein"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003029 InterPro:IPR003583 InterPro:IPR006641
Pfam:PF00575 PROSITE:PS50126 SMART:SM00278 SMART:SM00732
GO:GO:0003677 GO:GO:0006281 GO:GO:0003723 GO:GO:0016788
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:CP000032
GenomeReviews:CP000032_GR InterPro:IPR022967 SMART:SM00316
Gene3D:3.30.420.140 Gene3D:1.10.150.310 Gene3D:1.10.3500.10
InterPro:IPR023323 InterPro:IPR023097 InterPro:IPR018974
Pfam:PF09371 OMA:YKQKRRT Gene3D:1.10.10.650 InterPro:IPR023319
HOGENOM:HOG000270497 KO:K06959 RefSeq:YP_165135.1
ProteinModelPortal:Q5LKS3 SMR:Q5LKS3 GeneID:3196926
KEGG:sil:SPOA0306 PATRIC:23381958 ProtClustDB:CLSK2308454
Uniprot:Q5LKS3
Length = 765
Score = 203 (76.5 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 43/99 (43%), Positives = 60/99 (60%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVHVS+L+D FVKD +V GQ +KV +
Sbjct: 641 DLRPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKTGQVIKVTVT 700
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTR 242
E + RI L+MR+ D + +Q+K A + G + R+ R
Sbjct: 701 EIDVPRKRIGLSMRK-DGGASARQEKPARSGGPRDRSPR 738
>UNIPROTKB|Q71X59 [details] [associations]
symbol:LMOf2365_2340 "S1 RNA binding domain protein"
species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000110
InterPro:IPR003029 Pfam:PF00575 PRINTS:PR00681 PROSITE:PS50126
GO:GO:0006412 GO:GO:0003723 GO:GO:0005840 GO:GO:0003735
EMBL:AE017262 GenomeReviews:AE017262_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
RefSeq:YP_014929.1 ProteinModelPortal:Q71X59 STRING:Q71X59
GeneID:2799400 KEGG:lmf:LMOf2365_2340 PATRIC:20326043
eggNOG:COG1098 HOGENOM:HOG000217052 KO:K07570 OMA:KSIHDIA
ProtClustDB:PRK08059 Uniprot:Q71X59
Length = 117
Score = 178 (67.7 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 34/90 (37%), Positives = 55/90 (61%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G +GK+ IQ +GAF+ T GLVH+S ++ FVKD+ + VGQEVKV++++ +
Sbjct: 7 GDVVSGKIAGIQSYGAFVALDNSTQGLVHISEITHGFVKDIHDFLEVGQEVKVKILDIDE 66
Query: 208 ETGRISLTMRESDDISKLQQQKDATASGDK 237
E +ISL++R +++ K Q K S +
Sbjct: 67 EKNKISLSIRATEEAPKEQPTKKKQVSSSE 96
>TIGR_CMR|CPS_4965 [details] [associations]
symbol:CPS_4965 "putative transcription accessory protein"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003723 "RNA
binding" evidence=ISS] InterPro:IPR003029 InterPro:IPR003583
InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126 SMART:SM00278
SMART:SM00732 GO:GO:0003677 GO:GO:0006281 GO:GO:0003723
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016788
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 Gene3D:3.30.420.140 eggNOG:COG2183
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT
Gene3D:1.10.10.650 InterPro:IPR023319 HOGENOM:HOG000270497
KO:K06959 RefSeq:YP_271604.1 ProteinModelPortal:Q47UB9 SMR:Q47UB9
STRING:Q47UB9 GeneID:3522134 KEGG:cps:CPS_4965 PATRIC:21472723
BioCyc:CPSY167879:GI48-4966-MONOMER Uniprot:Q47UB9
Length = 796
Score = 202 (76.2 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 47/125 (37%), Positives = 69/125 (55%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S +++ F+ D IV G+ VKV+++
Sbjct: 654 DLTPGMILEGVVSNVANFGAFVDIGVHQDGLVHISSITEKFISDPREIVKAGEVVKVKVV 713
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGD------KVRTTRRSTS---KPGQKRDE 254
E + RISLTMR + +S Q K A+A D K + S++ KP K ++
Sbjct: 714 EVDIARKRISLTMRLEEQVSA-QTSKPASAKSDGKHDSNKAKNHENSSNNKGKPAVKHNK 772
Query: 255 MKTTK 259
K+ K
Sbjct: 773 SKSKK 777
>TIGR_CMR|CBU_0528 [details] [associations]
symbol:CBU_0528 "ribosomal protein S1" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] InterPro:IPR000110 InterPro:IPR003029
Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126
GO:GO:0006412 GO:GO:0003723 GO:GO:0005840 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 eggNOG:COG0539 RefSeq:NP_819560.2
ProteinModelPortal:Q83E09 SMR:Q83E09 PRIDE:Q83E09 GeneID:1208413
KEGG:cbu:CBU_0528 PATRIC:17929757 HOGENOM:HOG000044052 KO:K02945
OMA:QLGQDPW ProtClustDB:PRK06299 BioCyc:CBUR227377:GJ7S-531-MONOMER
TIGRFAMs:TIGR00717 Uniprot:Q83E09
Length = 551
Score = 136 (52.9 bits), Expect = 6.8e-12, Sum P(3) = 6.8e-12
Identities = 32/98 (32%), Positives = 58/98 (59%)
Query: 126 SRRS-RTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNF 184
SRR+ A S + E+L G G +++I +GAF+D G DGL+H++ ++
Sbjct: 165 SRRAVMEAETSAERQARLEELQEGQEIKGVIKNITDYGAFVDLGG-VDGLLHITDMAWGR 223
Query: 185 VKDVGSIVSVGQEVKVRLIEANAETGRISLTMRE-SDD 221
VK +++VG EV V++++ + + R+SL M++ +DD
Sbjct: 224 VKHPSDLLNVGDEVHVKVLKFDRDKKRVSLGMKQLADD 261
Score = 114 (45.2 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 51/182 (28%), Positives = 87/182 (47%)
Query: 168 GAFTDGLVHVSRLSDNFVKDVGSIVSV--GQEVKVRLIEANAETGRISLTMRESD-DISK 224
G G++ + R+ F D+ S+ + G V V+ + + G L +E D I K
Sbjct: 101 GEMVKGVI-IERVKGGFTVDLNSVRAFLPGSLVDVKPVR---DPGY--LEDKEIDFKIIK 154
Query: 225 LQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPE 284
+ Q+++ + TS Q R E + +GQ+++G +KN+T GAF+ L
Sbjct: 155 MDQRRNNVVVSRRA-VMEAETSAERQARLE----ELQEGQEIKGVIKNITDYGAFVDLG- 208
Query: 285 GEEGFLPTSEESDDGFANMMGGSSL-QVGQEVSVRVLRISRGQ--VTLTMKK-EDDVGSN 340
G +G L + D + + S L VG EV V+VL+ R + V+L MK+ DD +
Sbjct: 209 GVDGLLHIT---DMAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKRVSLGMKQLADDPWAK 265
Query: 341 LQ 342
++
Sbjct: 266 IE 267
Score = 96 (38.9 bits), Expect = 6.8e-12, Sum P(3) = 6.8e-12
Identities = 27/68 (39%), Positives = 38/68 (55%)
Query: 268 GTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRIS--RG 325
G V N+T G F+ L EG EG + TSE D N+ +Q G+EV V VL I R
Sbjct: 278 GKVTNITDYGCFVKLEEGVEGLVHTSE-LDWTNKNIHPSKVVQSGEEVEVMVLEIDEERR 336
Query: 326 QVTLTMKK 333
+++L +K+
Sbjct: 337 RISLGIKQ 344
Score = 52 (23.4 bits), Expect = 6.8e-12, Sum P(3) = 6.8e-12
Identities = 23/106 (21%), Positives = 47/106 (44%)
Query: 415 DGMASVPSAVGETVEDHEA-PSKEKGELADIANRNDDPQNV-MSGSSETLDGA--LQTIE 470
DG+ + S + T EA + +KG+ DP+ +S + L+G ++ +E
Sbjct: 384 DGLVHL-SDISWTESGEEAIRNYKKGDEVQAVILGIDPERERISLGIKQLEGDPFMEFVE 442
Query: 471 KETEETTLNQTIEETPSTDVSGELAEQALSTDGPKAGEFTESQTED 516
++ + ++E S ELA+Q L + ++T + +D
Sbjct: 443 SYDKDAVIQAKVKEVESKQAVLELADQVLGQ--MRLADYTYDRVKD 486
Score = 50 (22.7 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 16/70 (22%), Positives = 34/70 (48%)
Query: 259 KFVKGQD----LEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQE 314
+FV+ D ++ VK + A + L + G + ++ + D ++ L VG E
Sbjct: 439 EFVESYDKDAVIQAKVKEVESKQAVLELADQVLGQMRLADYTYDRVKDLT--QELNVGDE 496
Query: 315 VSVRVLRISR 324
V+V+++ + R
Sbjct: 497 VAVKIVNVDR 506
>UNIPROTKB|Q724J5 [details] [associations]
symbol:LMOf2365_0229 "RNA-binding protein" species:265669
"Listeria monocytogenes serotype 4b str. F2365" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003029 Pfam:PF00575
PROSITE:PS50126 GO:GO:0003723 EMBL:AE017262
GenomeReviews:AE017262_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 eggNOG:COG1098
HOGENOM:HOG000217052 RefSeq:YP_012839.1 ProteinModelPortal:Q724J5
STRING:Q724J5 GeneID:2797347 KEGG:lmf:LMOf2365_0229 PATRIC:20321637
KO:K07571 OMA:TGITHFG ProtClustDB:PRK08582 Uniprot:Q724J5
Length = 142
Score = 163 (62.4 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 41/130 (31%), Positives = 70/130 (53%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G GKV I FGAF++ GLVH+S ++DN+VKD+ I++VG EV V+++
Sbjct: 6 GNKLQGKVTGITNFGAFVELEGGKTGLVHISEVADNYVKDINDILTVGDEVTVKVMNIG- 64
Query: 208 ETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLE 267
+ G+I L++R++ D + +K + + KP + +++ + KF+K D
Sbjct: 65 DDGKIGLSIRKAVDRPD-RPEKSYDRKPKYSKKPAGNYVKPAESFEDIMS-KFLKDSDER 122
Query: 268 -GTVKNLTRS 276
T+K T S
Sbjct: 123 LTTIKRQTES 132
Score = 107 (42.7 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 36/125 (28%), Positives = 60/125 (48%)
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G L+G V +T GAF+ L G+ G + SE +D+ ++ L VG EV+V+V+ I
Sbjct: 6 GNKLQGKVTGITNFGAFVELEGGKTGLVHISEVADNYVKDI--NDILTVGDEVTVKVMNI 63
Query: 323 SR-GQVTLTMKKEDDVGSNLQLTQG----VIHAATNPFVLAFRSNKDI-SSFLDERDKSA 376
G++ L+++K D + + +V S +DI S FL + D+
Sbjct: 64 GDDGKIGLSIRKAVDRPDRPEKSYDRKPKYSKKPAGNYVKPAESFEDIMSKFLKDSDERL 123
Query: 377 TAAKK 381
T K+
Sbjct: 124 TTIKR 128
>UNIPROTKB|Q8E8N3 [details] [associations]
symbol:tex "Transcriptional accessory protein Tex"
species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003029 InterPro:IPR003583 InterPro:IPR006641
Pfam:PF00575 PROSITE:PS50126 SMART:SM00278 SMART:SM00732
GO:GO:0003677 GO:GO:0006281 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0016788 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 Gene3D:3.30.420.140 Gene3D:1.10.150.310
Gene3D:1.10.3500.10 InterPro:IPR023323 InterPro:IPR023097
InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT Gene3D:1.10.10.650
InterPro:IPR023319 HOGENOM:HOG000270497 KO:K06959
RefSeq:NP_720145.1 ProteinModelPortal:Q8E8N3 SMR:Q8E8N3
GeneID:1172212 KEGG:son:SO_4629 PATRIC:23528921
ProtClustDB:CLSK2304501 Uniprot:Q8E8N3
Length = 784
Score = 188 (71.2 bits), Expect = 4.9e-11, P = 4.9e-11
Identities = 47/138 (34%), Positives = 71/138 (51%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL P G V ++ FGAF+D G DGLVH+S L+D F+ D ++V G VKV++
Sbjct: 647 KDLKPEMILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFITDPHTVVKAGDVVKVKV 706
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
+E + E RI L+MR + I + + Q A A G + +KP Q+ K+ +
Sbjct: 707 MEVDVERRRIGLSMRLDEAIDQSKTQTRAPAQG------KHQANKPNQQH---KSAQHQS 757
Query: 263 GQDLEGTVK-NLTRSGAF 279
G+ +V N AF
Sbjct: 758 GRPAPKSVPVNAAMGNAF 775
>TIGR_CMR|SO_4629 [details] [associations]
symbol:SO_4629 "conserved hypothetical protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR003029 InterPro:IPR003583 InterPro:IPR006641
Pfam:PF00575 PROSITE:PS50126 SMART:SM00278 SMART:SM00732
GO:GO:0003677 GO:GO:0006281 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0016788 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 Gene3D:3.30.420.140 Gene3D:1.10.150.310
Gene3D:1.10.3500.10 InterPro:IPR023323 InterPro:IPR023097
InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT Gene3D:1.10.10.650
InterPro:IPR023319 HOGENOM:HOG000270497 KO:K06959
RefSeq:NP_720145.1 ProteinModelPortal:Q8E8N3 SMR:Q8E8N3
GeneID:1172212 KEGG:son:SO_4629 PATRIC:23528921
ProtClustDB:CLSK2304501 Uniprot:Q8E8N3
Length = 784
Score = 188 (71.2 bits), Expect = 4.9e-11, P = 4.9e-11
Identities = 47/138 (34%), Positives = 71/138 (51%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL P G V ++ FGAF+D G DGLVH+S L+D F+ D ++V G VKV++
Sbjct: 647 KDLKPEMILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFITDPHTVVKAGDVVKVKV 706
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
+E + E RI L+MR + I + + Q A A G + +KP Q+ K+ +
Sbjct: 707 MEVDVERRRIGLSMRLDEAIDQSKTQTRAPAQG------KHQANKPNQQH---KSAQHQS 757
Query: 263 GQDLEGTVK-NLTRSGAF 279
G+ +V N AF
Sbjct: 758 GRPAPKSVPVNAAMGNAF 775
>UNIPROTKB|Q60A39 [details] [associations]
symbol:MCA1032 "S1 RNA binding domain protein"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003029
InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126 SMART:SM00732
GO:GO:0006139 GO:GO:0003723 GO:GO:0016788 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AE017282
GenomeReviews:AE017282_GR InterPro:IPR022967 SMART:SM00316
Gene3D:3.30.420.140 Gene3D:1.10.150.310 Gene3D:1.10.3500.10
InterPro:IPR023323 InterPro:IPR023097 InterPro:IPR018974
Pfam:PF09371 OMA:YKQKRRT Gene3D:1.10.10.650 InterPro:IPR023319
HOGENOM:HOG000270497 KO:K06959 RefSeq:YP_113508.1
ProteinModelPortal:Q60A39 SMR:Q60A39 GeneID:3102226
KEGG:mca:MCA1032 PATRIC:22605872 Uniprot:Q60A39
Length = 735
Score = 186 (70.5 bits), Expect = 7.3e-11, P = 7.3e-11
Identities = 43/120 (35%), Positives = 68/120 (56%)
Query: 130 RTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVG 189
+TAR E + +DL PG G V ++ FGAF+D G DGLVH+S L+D FV+D
Sbjct: 601 KTARFKE-GVTEPKDLEPGMRLEGVVTNVTNFGAFVDVGVHQDGLVHISHLADRFVRDPR 659
Query: 190 SIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKV-RTTRRSTSKP 248
+V G V+V+++E + RI+L+MR D +K + + +G+ + RR+ +P
Sbjct: 660 EVVKAGDVVQVKVLEVDIPRRRIALSMRS--DAAKGEAEPPRRETGETAGKPRRRAAPQP 717
>UNIPROTKB|P46837 [details] [associations]
symbol:yhgF "predicted transcriptional accessory protein"
species:83333 "Escherichia coli K-12" [GO:0016788 "hydrolase
activity, acting on ester bonds" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR003029
InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126 SMART:SM00732
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006139 EMBL:U18997 GO:GO:0003723
GO:GO:0016788 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 Gene3D:3.30.420.140 eggNOG:COG2183
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT
Gene3D:1.10.10.650 InterPro:IPR023319 PIR:B65136 RefSeq:NP_417866.4
RefSeq:YP_492025.1 ProteinModelPortal:P46837 SMR:P46837
DIP:DIP-12337N IntAct:P46837 MINT:MINT-1288997 PRIDE:P46837
EnsemblBacteria:EBESCT00000002880 EnsemblBacteria:EBESCT00000016404
GeneID:12932731 GeneID:947911 KEGG:ecj:Y75_p3769 KEGG:eco:b3407
PATRIC:32122250 EchoBASE:EB2768 EcoGene:EG12932
HOGENOM:HOG000270497 KO:K06959 ProtClustDB:CLSK862831
BioCyc:EcoCyc:G7746-MONOMER BioCyc:ECOL316407:JW3370-MONOMER
Genevestigator:P46837 Uniprot:P46837
Length = 773
Score = 185 (70.2 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 42/119 (35%), Positives = 67/119 (56%)
Query: 130 RTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVG 189
+TA+ ++ N DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D
Sbjct: 634 KTAQFADGVETMN-DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPH 692
Query: 190 SIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKP 248
++V G VKV+++E + + RI+LTMR + + ++ G++ R +KP
Sbjct: 693 TVVKAGDIVKVKVLEVDLQRKRIALTMRLDEQPGETNARR---GGGNERPQNNRPAAKP 748
>UNIPROTKB|Q9KNL6 [details] [associations]
symbol:VC_2716 "Putative uncharacterized protein"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003029 InterPro:IPR003583
InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126 SMART:SM00278
SMART:SM00732 GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0006281 GO:GO:0003723 GO:GO:0016788 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 Gene3D:3.30.420.140 Gene3D:1.10.150.310
Gene3D:1.10.3500.10 InterPro:IPR023323 InterPro:IPR023097
InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT Gene3D:1.10.10.650
InterPro:IPR023319 KO:K06959 PIR:E82042 RefSeq:NP_232343.1
ProteinModelPortal:Q9KNL6 SMR:Q9KNL6 DNASU:2615544 GeneID:2615544
KEGG:vch:VC2716 PATRIC:20084450 ProtClustDB:CLSK2298315
Uniprot:Q9KNL6
Length = 773
Score = 184 (69.8 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 40/102 (39%), Positives = 59/102 (57%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL G G V ++ FGAF+D G DGLVH+S L+D F+ D +V G VKV+++
Sbjct: 647 DLEVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAGDIVKVKVM 706
Query: 204 EANAETGRISLTMRESDDISK--LQQQKDATASGDKVRTTRR 243
E + + RI+L+MR +D+ + Q+ A SG + R RR
Sbjct: 707 EVDVQRKRIALSMRLNDEPGQDNRSQRSAAPRSGQERRAPRR 748
>TIGR_CMR|VC_2716 [details] [associations]
symbol:VC_2716 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR003029
InterPro:IPR003583 InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126
SMART:SM00278 SMART:SM00732 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0003723 GO:GO:0016788
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 Gene3D:3.30.420.140
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT
Gene3D:1.10.10.650 InterPro:IPR023319 KO:K06959 PIR:E82042
RefSeq:NP_232343.1 ProteinModelPortal:Q9KNL6 SMR:Q9KNL6
DNASU:2615544 GeneID:2615544 KEGG:vch:VC2716 PATRIC:20084450
ProtClustDB:CLSK2298315 Uniprot:Q9KNL6
Length = 773
Score = 184 (69.8 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 40/102 (39%), Positives = 59/102 (57%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL G G V ++ FGAF+D G DGLVH+S L+D F+ D +V G VKV+++
Sbjct: 647 DLEVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAGDIVKVKVM 706
Query: 204 EANAETGRISLTMRESDDISK--LQQQKDATASGDKVRTTRR 243
E + + RI+L+MR +D+ + Q+ A SG + R RR
Sbjct: 707 EVDVQRKRIALSMRLNDEPGQDNRSQRSAAPRSGQERRAPRR 748
>TIGR_CMR|CPS_2335 [details] [associations]
symbol:CPS_2335 "ribosomal protein S1" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299
TIGRFAMs:TIGR00717 RefSeq:YP_269055.1 ProteinModelPortal:Q482G3
SMR:Q482G3 STRING:Q482G3 GeneID:3519189 KEGG:cps:CPS_2335
PATRIC:21467761 BioCyc:CPSY167879:GI48-2400-MONOMER Uniprot:Q482G3
Length = 553
Score = 134 (52.2 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 27/76 (35%), Positives = 48/76 (63%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E L G G V+++ +GAF+D G DGL+H++ ++ VK IV+VG E++V++
Sbjct: 187 ESLAEGQEVKGIVKNLTDYGAFVDLGGI-DGLLHITDMAWKRVKHPSEIVNVGDEIQVKV 245
Query: 203 IEANAETGRISLTMRE 218
++ + E R+SL M++
Sbjct: 246 LKFDRERTRVSLGMKQ 261
Score = 104 (41.7 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 23/73 (31%), Positives = 45/73 (61%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDV--GSIVSVGQEVKVRLIEA 205
G+ +G+V ++ +G F++ +GLVHVS + D K++ +V++G V+V ++E
Sbjct: 277 GSKLSGRVTNLTDYGCFVEIQEGVEGLVHVSEM-DWTNKNIHPSKVVNLGDTVEVLVLEI 335
Query: 206 NAETGRISLTMRE 218
+ E RISL +++
Sbjct: 336 DEERRRISLGLKQ 348
Score = 104 (41.7 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G +GK++SI FG FI DGLVH+S +S ++ G E+ +++ +
Sbjct: 364 GDKVSGKIKSITDFGIFIGLDGGIDGLVHLSDISWAGGEEAVRDYKKGDEIDAIVLQVDP 423
Query: 208 ETGRISLTMRESDD 221
E RISL +++++D
Sbjct: 424 ERERISLGVKQAED 437
Score = 95 (38.5 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 259 KFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVR 318
++ +G L G V NLT G F+ + EG EG + SE D N+ + +G V V
Sbjct: 273 RYPEGSKLSGRVTNLTDYGCFVEIQEGVEGLVHVSE-MDWTNKNIHPSKVVNLGDTVEVL 331
Query: 319 VLRIS--RGQVTLTMKK 333
VL I R +++L +K+
Sbjct: 332 VLEIDEERRRISLGLKQ 348
Score = 85 (35.0 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 25/86 (29%), Positives = 44/86 (51%)
Query: 260 FVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRV 319
F KG + G +K++T G FI L G +G + S+ S G + + G E+ V
Sbjct: 361 FNKGDKVSGKIKSITDFGIFIGLDGGIDGLVHLSDISWAGGEEAV--RDYKKGDEIDAIV 418
Query: 320 LRIS--RGQVTLTMKKEDDVGSNLQL 343
L++ R +++L +K+ +D N+ L
Sbjct: 419 LQVDPERERISLGVKQAEDDPFNMYL 444
Score = 80 (33.2 bits), Expect = 6.2e-09, Sum P(2) = 6.2e-09
Identities = 28/107 (26%), Positives = 49/107 (45%)
Query: 262 KGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLR 321
KG + G V + GA I L E EG+L S+ S + + + L+VG +V R +
Sbjct: 449 KGAIVTGKVTEVDAKGATILLAESVEGYLRVSDISVERIED--ASTVLKVGDDVEARFMG 506
Query: 322 ISRGQ--VTLTMKKED--DVGSNLQLTQGVIHAATNPFVLAFRSNKD 364
+ R ++L++K +D D + V + AF++ K+
Sbjct: 507 VDRKNRTISLSIKAKDQADEREAMDNLNQVEETGLSAMAAAFKNAKN 553
>UNIPROTKB|Q0BZL2 [details] [associations]
symbol:HNE_2386 "S1 RNA binding domain protein"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003029
InterPro:IPR003583 InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126
SMART:SM00278 SMART:SM00732 GO:GO:0003677 GO:GO:0006281
GO:GO:0003723 GO:GO:0016788 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 EMBL:CP000158 GenomeReviews:CP000158_GR
InterPro:IPR022967 SMART:SM00316 Gene3D:3.30.420.140 eggNOG:COG2183
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT
Gene3D:1.10.10.650 InterPro:IPR023319 HOGENOM:HOG000270497
KO:K06959 RefSeq:YP_761081.1 ProteinModelPortal:Q0BZL2 SMR:Q0BZL2
STRING:Q0BZL2 GeneID:4287336 KEGG:hne:HNE_2386 PATRIC:32217623
ProtClustDB:CLSK2531628 BioCyc:HNEP228405:GI69-2408-MONOMER
Uniprot:Q0BZL2
Length = 771
Score = 180 (68.4 bits), Expect = 3.5e-10, P = 3.5e-10
Identities = 41/108 (37%), Positives = 55/108 (50%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAF+D G DGLVH+S +SD F+KD V GQ V V
Sbjct: 653 KVTDLKPGMRLEGVVTNVTAFGAFVDIGVHQDGLVHISEMSDTFIKDPHDAVKTGQVVSV 712
Query: 201 RLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKP 248
++E + RI L+M++ K A+A K + SKP
Sbjct: 713 TVMEVDVARKRIGLSMKQGGKRPSGAPDKAASALSSKAPPAKEQ-SKP 759
Score = 124 (48.7 bits), Expect = 0.00042, P = 0.00042
Identities = 43/144 (29%), Positives = 71/144 (49%)
Query: 205 ANAETGRISLTMRESDDISKLQQQK--DATASGDKVRTTRRSTSKPGQK-RDEMKTTKFV 261
A A ++ + + ISKL+ + DAT ++ + KPG+ R E KT F
Sbjct: 589 AKAAGRKVETIIGDKAFISKLKPEDFADATFGVPTIKDILKELEKPGRDPRPEFKTATFQ 648
Query: 262 KGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQV 311
+G D LEG V N+T GAF+ + ++G + SE SD + +++
Sbjct: 649 EGIDKVTDLKPGMRLEGVVTNVTAFGAFVDIGVHQDGLVHISEMSDTFIKDPH--DAVKT 706
Query: 312 GQEVSVRVLRI--SRGQVTLTMKK 333
GQ VSV V+ + +R ++ L+MK+
Sbjct: 707 GQVVSVTVMEVDVARKRIGLSMKQ 730
>UNIPROTKB|Q9KQT3 [details] [associations]
symbol:VC_1915 "30S ribosomal protein S1" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR000110 InterPro:IPR003029
Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126
GO:GO:0006412 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723
GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 HSSP:P05055
KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299 TIGRFAMs:TIGR00717
PIR:B82141 RefSeq:NP_231549.1 ProteinModelPortal:Q9KQT3 SMR:Q9KQT3
DNASU:2613544 GeneID:2613544 KEGG:vch:VC1915 PATRIC:20082874
Uniprot:Q9KQT3
Length = 556
Score = 125 (49.1 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 31/93 (33%), Positives = 54/93 (58%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDV--GSIVSVGQEVKVRLIEA 205
G +G+V ++ +G F++ +GLVHVS + D K++ +V+VG EV+V +++
Sbjct: 277 GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEM-DWTNKNIHPSKVVNVGDEVEVMVLDI 335
Query: 206 NAETGRISLTMRESDDISKLQQQKDATASGDKV 238
+ E RISL +++ + Q +A A GDKV
Sbjct: 336 DEERRRISLGLKQCK-ANPWQSFAEAQAKGDKV 367
Score = 123 (48.4 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 25/76 (32%), Positives = 47/76 (61%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E L G G V+++ +GAF+D G DGL+H++ ++ VK IV+VG E+ V++
Sbjct: 187 ETLQEGTEVKGIVKNLTDYGAFVDLGG-VDGLLHITDMAWKRVKHPSEIVNVGDEILVKV 245
Query: 203 IEANAETGRISLTMRE 218
++ + + R+SL +++
Sbjct: 246 LKFDRDRTRVSLGLKQ 261
Score = 105 (42.0 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFV-KDVGSIVSVGQEVKVRLIEAN 206
G TGK++SI FG FI DGLVH+S +S N ++ G E+ ++ +
Sbjct: 364 GDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAVVLAVD 423
Query: 207 AETGRISLTMRESDD 221
AE RISL +++ ++
Sbjct: 424 AERERISLGIKQMEN 438
Score = 103 (41.3 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 28/77 (36%), Positives = 41/77 (53%)
Query: 259 KFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVR 318
++ +G L G V NLT G F+ + EG EG + SE D N+ + VG EV V
Sbjct: 273 RYPEGHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSE-MDWTNKNIHPSKVVNVGDEVEVM 331
Query: 319 VLRIS--RGQVTLTMKK 333
VL I R +++L +K+
Sbjct: 332 VLDIDEERRRISLGLKQ 348
Score = 85 (35.0 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 24/77 (31%), Positives = 38/77 (49%)
Query: 262 KGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLR 321
KG + GTV + GA I L +G EG++ SE S D + L VG +V +
Sbjct: 450 KGALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIED--ASLILNVGDKVEAKFTG 507
Query: 322 ISRGQ--VTLTMKKEDD 336
+ R + L++K +D+
Sbjct: 508 VDRKNRVINLSIKAKDE 524
Score = 74 (31.1 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 28/102 (27%), Positives = 50/102 (49%)
Query: 262 KGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQV---GQEVSVR 318
KG + G +K++T G FI L G +G + S+ S N+ G +++ G E+S
Sbjct: 363 KGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDIS----WNVPGEEAVREFKKGDEISAV 418
Query: 319 VLRIS--RGQVTLTMKKEDDVGSNLQLTQGVIHAATNPFVLA 358
VL + R +++L +K+ ++ N ++ A N V A
Sbjct: 419 VLAVDAERERISLGIKQMENDPFNAYVSDNKKGALVNGTVTA 460
>TIGR_CMR|VC_1915 [details] [associations]
symbol:VC_1915 "ribosomal protein S1" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 KO:K02945 OMA:QLGQDPW
ProtClustDB:PRK06299 TIGRFAMs:TIGR00717 PIR:B82141
RefSeq:NP_231549.1 ProteinModelPortal:Q9KQT3 SMR:Q9KQT3
DNASU:2613544 GeneID:2613544 KEGG:vch:VC1915 PATRIC:20082874
Uniprot:Q9KQT3
Length = 556
Score = 125 (49.1 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 31/93 (33%), Positives = 54/93 (58%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDV--GSIVSVGQEVKVRLIEA 205
G +G+V ++ +G F++ +GLVHVS + D K++ +V+VG EV+V +++
Sbjct: 277 GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEM-DWTNKNIHPSKVVNVGDEVEVMVLDI 335
Query: 206 NAETGRISLTMRESDDISKLQQQKDATASGDKV 238
+ E RISL +++ + Q +A A GDKV
Sbjct: 336 DEERRRISLGLKQCK-ANPWQSFAEAQAKGDKV 367
Score = 123 (48.4 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 25/76 (32%), Positives = 47/76 (61%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E L G G V+++ +GAF+D G DGL+H++ ++ VK IV+VG E+ V++
Sbjct: 187 ETLQEGTEVKGIVKNLTDYGAFVDLGG-VDGLLHITDMAWKRVKHPSEIVNVGDEILVKV 245
Query: 203 IEANAETGRISLTMRE 218
++ + + R+SL +++
Sbjct: 246 LKFDRDRTRVSLGLKQ 261
Score = 105 (42.0 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFV-KDVGSIVSVGQEVKVRLIEAN 206
G TGK++SI FG FI DGLVH+S +S N ++ G E+ ++ +
Sbjct: 364 GDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAVVLAVD 423
Query: 207 AETGRISLTMRESDD 221
AE RISL +++ ++
Sbjct: 424 AERERISLGIKQMEN 438
Score = 103 (41.3 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 28/77 (36%), Positives = 41/77 (53%)
Query: 259 KFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVR 318
++ +G L G V NLT G F+ + EG EG + SE D N+ + VG EV V
Sbjct: 273 RYPEGHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSE-MDWTNKNIHPSKVVNVGDEVEVM 331
Query: 319 VLRIS--RGQVTLTMKK 333
VL I R +++L +K+
Sbjct: 332 VLDIDEERRRISLGLKQ 348
Score = 85 (35.0 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 24/77 (31%), Positives = 38/77 (49%)
Query: 262 KGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLR 321
KG + GTV + GA I L +G EG++ SE S D + L VG +V +
Sbjct: 450 KGALVNGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIED--ASLILNVGDKVEAKFTG 507
Query: 322 ISRGQ--VTLTMKKEDD 336
+ R + L++K +D+
Sbjct: 508 VDRKNRVINLSIKAKDE 524
Score = 74 (31.1 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 28/102 (27%), Positives = 50/102 (49%)
Query: 262 KGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQV---GQEVSVR 318
KG + G +K++T G FI L G +G + S+ S N+ G +++ G E+S
Sbjct: 363 KGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDIS----WNVPGEEAVREFKKGDEISAV 418
Query: 319 VLRIS--RGQVTLTMKKEDDVGSNLQLTQGVIHAATNPFVLA 358
VL + R +++L +K+ ++ N ++ A N V A
Sbjct: 419 VLAVDAERERISLGIKQMENDPFNAYVSDNKKGALVNGTVTA 460
>UNIPROTKB|Q88AQ9 [details] [associations]
symbol:PSPTO_0327 "S1 RNA binding domain protein"
species:223283 "Pseudomonas syringae pv. tomato str. DC3000"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR003029
InterPro:IPR003583 InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126
SMART:SM00278 SMART:SM00732 GO:GO:0003677 GO:GO:0006281
GO:GO:0003723 GO:GO:0016788 EMBL:AE016853 GenomeReviews:AE016853_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 Gene3D:3.30.420.140
eggNOG:COG2183 Gene3D:1.10.150.310 Gene3D:1.10.3500.10
InterPro:IPR023323 InterPro:IPR023097 InterPro:IPR018974
Pfam:PF09371 OMA:YKQKRRT Gene3D:1.10.10.650 InterPro:IPR023319
HOGENOM:HOG000270497 KO:K06959 RefSeq:NP_790177.1
ProteinModelPortal:Q88AQ9 SMR:Q88AQ9 GeneID:1181936
KEGG:pst:PSPTO_0327 PATRIC:19991830 ProtClustDB:CLSK2299216
BioCyc:PSYR223283:GJIX-323-MONOMER Uniprot:Q88AQ9
Length = 773
Score = 179 (68.1 bits), Expect = 4.6e-10, P = 4.6e-10
Identities = 45/129 (34%), Positives = 68/129 (52%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S LS+ F+KD V G VKV++
Sbjct: 644 KDLQPGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKV 703
Query: 203 IEANAETGRISLTMRESDDIS-KLQQQKDAT--ASGDKVRTT-RRSTSKPGQKRDEMKTT 258
+E + R+ L+MR SD K+ + A AS + + R+ T+ P + M +
Sbjct: 704 MEIDIPRKRVGLSMRMSDTPGEKIDGARGARPGASPRQQNSAPRKETTAPAPANNAMASL 763
Query: 259 KFVKGQDLE 267
F + L+
Sbjct: 764 -FANAKQLK 771
>UNIPROTKB|Q81VX9 [details] [associations]
symbol:BAS0060 "S1 RNA binding domain protein" species:1392
"Bacillus anthracis" [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003029 Pfam:PF00575 PROSITE:PS50126 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 HOGENOM:HOG000217052
KO:K07571 OMA:TGITHFG ProtClustDB:PRK08582 RefSeq:NP_842629.1
RefSeq:YP_016663.1 RefSeq:YP_026347.1 ProteinModelPortal:Q81VX9
IntAct:Q81VX9 DNASU:1086747 EnsemblBacteria:EBBACT00000012087
EnsemblBacteria:EBBACT00000017904 EnsemblBacteria:EBBACT00000019266
GeneID:1086747 GeneID:2814985 GeneID:2852426 KEGG:ban:BA_0060
KEGG:bar:GBAA_0060 KEGG:bat:BAS0060
BioCyc:BANT260799:GJAJ-67-MONOMER BioCyc:BANT261594:GJ7F-69-MONOMER
Uniprot:Q81VX9
Length = 160
Score = 152 (58.6 bits), Expect = 6.9e-10, P = 6.9e-10
Identities = 32/98 (32%), Positives = 58/98 (59%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G+ GKV I FGAF++ GLVH+S ++DN+VKD+ + VG +V+V++I
Sbjct: 6 GSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINDHLKVGDQVEVKVINVEK 65
Query: 208 ETGRISLTMRESDDISKLQQQK---DATASGDKVRTTR 242
+ G+I L+++++ + K + + + GD+ R+ R
Sbjct: 66 D-GKIGLSIKKAKEREKTEGDRPRGEYQRGGDQQRSGR 102
Score = 118 (46.6 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G L+G V +T GAF+ LPEG G + SE +D+ ++ L+VG +V V+V+ +
Sbjct: 6 GSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDI--NDHLKVGDQVEVKVINV 63
Query: 323 SR-GQVTLTMKK 333
+ G++ L++KK
Sbjct: 64 EKDGKIGLSIKK 75
>TIGR_CMR|BA_0060 [details] [associations]
symbol:BA_0060 "S1 RNA binding domain protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003029 Pfam:PF00575 PROSITE:PS50126
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 HOGENOM:HOG000217052
KO:K07571 OMA:TGITHFG ProtClustDB:PRK08582 RefSeq:NP_842629.1
RefSeq:YP_016663.1 RefSeq:YP_026347.1 ProteinModelPortal:Q81VX9
IntAct:Q81VX9 DNASU:1086747 EnsemblBacteria:EBBACT00000012087
EnsemblBacteria:EBBACT00000017904 EnsemblBacteria:EBBACT00000019266
GeneID:1086747 GeneID:2814985 GeneID:2852426 KEGG:ban:BA_0060
KEGG:bar:GBAA_0060 KEGG:bat:BAS0060
BioCyc:BANT260799:GJAJ-67-MONOMER BioCyc:BANT261594:GJ7F-69-MONOMER
Uniprot:Q81VX9
Length = 160
Score = 152 (58.6 bits), Expect = 6.9e-10, P = 6.9e-10
Identities = 32/98 (32%), Positives = 58/98 (59%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G+ GKV I FGAF++ GLVH+S ++DN+VKD+ + VG +V+V++I
Sbjct: 6 GSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINDHLKVGDQVEVKVINVEK 65
Query: 208 ETGRISLTMRESDDISKLQQQK---DATASGDKVRTTR 242
+ G+I L+++++ + K + + + GD+ R+ R
Sbjct: 66 D-GKIGLSIKKAKEREKTEGDRPRGEYQRGGDQQRSGR 102
Score = 118 (46.6 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G L+G V +T GAF+ LPEG G + SE +D+ ++ L+VG +V V+V+ +
Sbjct: 6 GSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDI--NDHLKVGDQVEVKVINV 63
Query: 323 SR-GQVTLTMKK 333
+ G++ L++KK
Sbjct: 64 EKDGKIGLSIKK 75
>TIGR_CMR|BA_5132 [details] [associations]
symbol:BA_5132 "general stress protein 13" species:198094
"Bacillus anthracis str. Ames" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006950 "response to stress" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575 PRINTS:PR00681
PROSITE:PS50126 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 HOGENOM:HOG000217052
KO:K07570 ProtClustDB:PRK08059 RefSeq:NP_847318.1
RefSeq:YP_021786.1 RefSeq:YP_031013.1 ProteinModelPortal:Q81K73
DNASU:1084499 EnsemblBacteria:EBBACT00000012496
EnsemblBacteria:EBBACT00000016095 EnsemblBacteria:EBBACT00000023270
GeneID:1084499 GeneID:2815743 GeneID:2848785 KEGG:ban:BA_5132
KEGG:bar:GBAA_5132 KEGG:bat:BAS4770 OMA:ETPDHTE
BioCyc:BANT260799:GJAJ-4848-MONOMER
BioCyc:BANT261594:GJ7F-5009-MONOMER Uniprot:Q81K73
Length = 114
Score = 152 (58.6 bits), Expect = 6.9e-10, P = 6.9e-10
Identities = 28/76 (36%), Positives = 48/76 (63%)
Query: 142 NEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVR 201
+E G TGKV IQ +GAF+ A T GLVH+S +++ +VKD+ + VG V+V+
Sbjct: 2 SEQYTTGVVVTGKVTGIQDYGAFVALDAETQGLVHISEITNGYVKDIHDFLKVGDTVEVK 61
Query: 202 LIEANAETGRISLTMR 217
++ + E ++SL+++
Sbjct: 62 VLSIDEEHRKMSLSLK 77
>UNIPROTKB|P0AG67 [details] [associations]
symbol:rpsA "30S ribosomal subunit protein S1"
species:83333 "Escherichia coli K-12" [GO:2000766 "negative
regulation of cytoplasmic translation" evidence=IEP;IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0016020 "membrane"
evidence=IDA] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0006412
"translation" evidence=IMP] [GO:0003735 "structural constituent of
ribosome" evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0016020
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006412 GO:GO:0003729 GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 PDB:2BH8 PDBsum:2BH8 GO:GO:0022627
GO:GO:2000766 EMBL:X04864 EMBL:X00785 EMBL:V00352 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299
TIGRFAMs:TIGR00717 EMBL:V00342 PIR:F64830 RefSeq:NP_415431.1
RefSeq:YP_489183.1 PDB:2KHI PDB:2KHJ PDBsum:2KHI PDBsum:2KHJ
ProteinModelPortal:P0AG67 SMR:P0AG67 DIP:DIP-35884N IntAct:P0AG67
MINT:MINT-1315122 PhosSite:P010447 SWISS-2DPAGE:P0AG67 PaxDb:P0AG67
PRIDE:P0AG67 EnsemblBacteria:EBESCT00000004097
EnsemblBacteria:EBESCT00000004098 EnsemblBacteria:EBESCT00000004099
EnsemblBacteria:EBESCT00000017224 GeneID:12934066 GeneID:945536
KEGG:ecj:Y75_p0883 KEGG:eco:b0911 PATRIC:32117035 EchoBASE:EB0893
EcoGene:EG10900 BioCyc:EcoCyc:EG10900-MONOMER
BioCyc:ECOL316407:JW0894-MONOMER EvolutionaryTrace:P0AG67
Genevestigator:P0AG67 Uniprot:P0AG67
Length = 557
Score = 128 (50.1 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 26/76 (34%), Positives = 48/76 (63%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E+L G G V+++ +GAF+D G DGL+H++ ++ VK IV+VG E+ V++
Sbjct: 187 ENLQEGMEVKGIVKNLTDYGAFVDLGG-VDGLLHITDMAWKRVKHPSEIVNVGDEITVKV 245
Query: 203 IEANAETGRISLTMRE 218
++ + E R+SL +++
Sbjct: 246 LKFDRERTRVSLGLKQ 261
Score = 116 (45.9 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 31/104 (29%), Positives = 56/104 (53%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDV--GSIVSVGQEVKVRLIEA 205
G TG+V ++ +G F++ +GLVHVS + D K++ +V+VG V+V +++
Sbjct: 277 GTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEM-DWTNKNIHPSKVVNVGDVVEVMVLDI 335
Query: 206 NAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPG 249
+ E RISL +++ + QQ + GD+V +S + G
Sbjct: 336 DEERRRISLGLKQCK-ANPWQQFAETHNKGDRVEGKIKSITDFG 378
Score = 102 (41.0 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFV-KDVGSIVSVGQEVKVRLIEAN 206
G GK++SI FG FI DGLVH+S +S N ++ G E+ +++ +
Sbjct: 364 GDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVD 423
Query: 207 AETGRISLTMRE 218
AE RISL +++
Sbjct: 424 AERERISLGVKQ 435
Score = 94 (38.1 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 27/77 (35%), Positives = 40/77 (51%)
Query: 259 KFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVR 318
++ +G L G V NLT G F+ + EG EG + SE D N+ + VG V V
Sbjct: 273 RYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSE-MDWTNKNIHPSKVVNVGDVVEVM 331
Query: 319 VLRIS--RGQVTLTMKK 333
VL I R +++L +K+
Sbjct: 332 VLDIDEERRRISLGLKQ 348
Score = 80 (33.2 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 23/77 (29%), Positives = 38/77 (49%)
Query: 262 KGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLR 321
KG + G V + GA + L +G EG+L SE S D + L VG EV +
Sbjct: 450 KGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDAT--LVLSVGDEVEAKFTG 507
Query: 322 ISRGQ--VTLTMKKEDD 336
+ R ++L+++ +D+
Sbjct: 508 VDRKNRAISLSVRAKDE 524
Score = 79 (32.9 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 36/146 (24%), Positives = 71/146 (48%)
Query: 262 KGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLR 321
KG +EG +K++T G FI L G +G + S+ S + A + G E++ VL+
Sbjct: 363 KGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWN-VAGEEAVREYKKGDEIAAVVLQ 421
Query: 322 IS--RGQVTLTMKK--EDDVGSNLQLTQ-GVIHAATNPFVLAFRSNKDISSFLDERDKSA 376
+ R +++L +K+ ED + + L + G I V A + +++ ++ +++
Sbjct: 422 VDAERERISLGVKQLAEDPFNNWVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRAS 481
Query: 377 TAAK-KSEKPTPI-EIGGEVSQMEAG 400
A++ + E T + +G EV G
Sbjct: 482 EASRDRVEDATLVLSVGDEVEAKFTG 507
>TIGR_CMR|SO_2402 [details] [associations]
symbol:SO_2402 "ribosomal protein S1" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 HOGENOM:HOG000044052
KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299 TIGRFAMs:TIGR00717
RefSeq:NP_717992.1 ProteinModelPortal:Q8EEI0 SMR:Q8EEI0
GeneID:1170119 KEGG:son:SO_2402 PATRIC:23524423 Uniprot:Q8EEI0
Length = 555
Score = 130 (50.8 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 26/76 (34%), Positives = 48/76 (63%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E+L G G V+++ +GAF+D G DGL+H++ ++ VK IV+VG E+ V++
Sbjct: 187 ENLQEGQAVKGIVKNLTDYGAFVDLGG-VDGLLHITDMAWKRVKHPSEIVNVGDEINVKV 245
Query: 203 IEANAETGRISLTMRE 218
++ + E R+SL +++
Sbjct: 246 LKYDRERTRVSLGLKQ 261
Score = 113 (44.8 bits), Expect = 8.1e-05, Sum P(2) = 8.1e-05
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFV-KDVGSIVSVGQEVKVRLIEAN 206
G +GK++SI FG FI DGLVH+S +S N +D S G E+ ++ +
Sbjct: 364 GDKVSGKIKSITDFGIFIGLDGGIDGLVHLSDISWNGTGEDAVSEYKKGDEIHAVVLSVD 423
Query: 207 AETGRISLTMRESDD 221
E RISL +++++D
Sbjct: 424 PERERISLGVKQTED 438
Score = 105 (42.0 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 23/69 (33%), Positives = 44/69 (63%)
Query: 152 TGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDV--GSIVSVGQEVKVRLIEANAET 209
TG+V ++ +G F++ +GLVHVS + D K++ +V++G EV+V +++ + E
Sbjct: 281 TGRVTNLTDYGCFVEIEEGVEGLVHVSEM-DWTNKNIHPSKVVNLGDEVEVLVLDIDEER 339
Query: 210 GRISLTMRE 218
RISL +++
Sbjct: 340 RRISLGLKQ 348
Score = 91 (37.1 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 259 KFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVR 318
++ + L G V NLT G F+ + EG EG + SE D N+ + +G EV V
Sbjct: 273 RYPENTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSE-MDWTNKNIHPSKVVNLGDEVEVL 331
Query: 319 VLRIS--RGQVTLTMKK 333
VL I R +++L +K+
Sbjct: 332 VLDIDEERRRISLGLKQ 348
Score = 89 (36.4 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 26/82 (31%), Positives = 44/82 (53%)
Query: 258 TKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSV 317
T++ KG + G +K++T G FI L G +G + S+ S +G S + G E+
Sbjct: 359 TRYNKGDKVSGKIKSITDFGIFIGLDGGIDGLVHLSDISWNGTGED-AVSEYKKGDEIHA 417
Query: 318 RVLRIS--RGQVTLTMKK-EDD 336
VL + R +++L +K+ EDD
Sbjct: 418 VVLSVDPERERISLGVKQTEDD 439
Score = 62 (26.9 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 16/77 (20%), Positives = 37/77 (48%)
Query: 262 KGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLR 321
KG + GTV + G + L + EG++ ++ S + + + VG + + +
Sbjct: 450 KGTIVHGTVSAVDAKGVTVELADTVEGYIRVADISRERIED--ASTVYSVGDAIEAKFMG 507
Query: 322 ISRGQ--VTLTMKKEDD 336
+ R ++L++K +D+
Sbjct: 508 VDRKNRSISLSIKAKDE 524
>UNIPROTKB|Q721R8 [details] [associations]
symbol:LMOf2365_0917 "S1 RNA binding domain protein"
species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR003029
InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126 SMART:SM00732
GO:GO:0006139 GO:GO:0003723 GO:GO:0016788 EMBL:AE017262
GenomeReviews:AE017262_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
Gene3D:3.30.420.140 eggNOG:COG2183 Gene3D:1.10.150.310
Gene3D:1.10.3500.10 InterPro:IPR023323 InterPro:IPR023097
InterPro:IPR018974 Pfam:PF09371 HOGENOM:HOG000270498 OMA:YKQKRRT
Gene3D:1.10.10.650 InterPro:IPR023319 KO:K06959 RefSeq:YP_013519.1
ProteinModelPortal:Q721R8 STRING:Q721R8 GeneID:2798896
KEGG:lmf:LMOf2365_0917 PATRIC:20323050 ProtClustDB:CLSK2391096
Uniprot:Q721R8
Length = 725
Score = 172 (65.6 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 36/77 (46%), Positives = 50/77 (64%)
Query: 140 VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
+ EDL G G VR++ FGAF+D G DGLVH+S+LS++FVK+ +VSVG V
Sbjct: 641 ISMEDLKQGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSVGDVVT 700
Query: 200 VRLIEANAETGRISLTM 216
V + E + + RI+LTM
Sbjct: 701 VWVDEVDTKKNRIALTM 717
>UNIPROTKB|Q74GL1 [details] [associations]
symbol:tex "S1 RNA-binding domain-containing
transcriptional accessory protein" species:243231 "Geobacter
sulfurreducens PCA" [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003029 InterPro:IPR003583 InterPro:IPR006641
Pfam:PF00575 PROSITE:PS50126 SMART:SM00278 SMART:SM00732
GO:GO:0003677 GO:GO:0006281 GO:GO:0003723 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0016788 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
Gene3D:3.30.420.140 Gene3D:1.10.150.310 Gene3D:1.10.3500.10
InterPro:IPR023323 InterPro:IPR023097 InterPro:IPR018974
Pfam:PF09371 OMA:YKQKRRT Gene3D:1.10.10.650 InterPro:IPR023319
HOGENOM:HOG000270497 KO:K06959 RefSeq:NP_951296.1
ProteinModelPortal:Q74GL1 SMR:Q74GL1 GeneID:2687602
KEGG:gsu:GSU0235 PATRIC:22023214 ProtClustDB:CLSK2306712
BioCyc:GSUL243231:GH27-222-MONOMER Uniprot:Q74GL1
Length = 761
Score = 172 (65.6 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 36/76 (47%), Positives = 48/76 (63%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL G G V ++ FGAF+D G DGLVHVS LS FVKD V VGQ V+V+++
Sbjct: 646 DLKEGMVLQGVVTNVTAFGAFVDVGVHQDGLVHVSHLSVKFVKDPAEAVRVGQVVQVKVL 705
Query: 204 EANAETGRISLTMRES 219
+ + RISL++RE+
Sbjct: 706 SVDVQRKRISLSIREA 721
>TIGR_CMR|GSU_0235 [details] [associations]
symbol:GSU_0235 "S1 RNA binding domain protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003029 InterPro:IPR003583
InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126 SMART:SM00278
SMART:SM00732 GO:GO:0003677 GO:GO:0006281 GO:GO:0003723
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0016788
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 Gene3D:3.30.420.140
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT
Gene3D:1.10.10.650 InterPro:IPR023319 HOGENOM:HOG000270497
KO:K06959 RefSeq:NP_951296.1 ProteinModelPortal:Q74GL1 SMR:Q74GL1
GeneID:2687602 KEGG:gsu:GSU0235 PATRIC:22023214
ProtClustDB:CLSK2306712 BioCyc:GSUL243231:GH27-222-MONOMER
Uniprot:Q74GL1
Length = 761
Score = 172 (65.6 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 36/76 (47%), Positives = 48/76 (63%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL G G V ++ FGAF+D G DGLVHVS LS FVKD V VGQ V+V+++
Sbjct: 646 DLKEGMVLQGVVTNVTAFGAFVDVGVHQDGLVHVSHLSVKFVKDPAEAVRVGQVVQVKVL 705
Query: 204 EANAETGRISLTMRES 219
+ + RISL++RE+
Sbjct: 706 SVDVQRKRISLSIREA 721
>UNIPROTKB|Q81VF3 [details] [associations]
symbol:BA_0255 "S1 RNA binding domain protein" species:1392
"Bacillus anthracis" [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003029 InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126
SMART:SM00732 EMBL:AE016879 EMBL:AE017334 GenomeReviews:AE016879_GR
GenomeReviews:AE017334_GR GO:GO:0006139 GO:GO:0003723 GO:GO:0016788
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 Gene3D:3.30.420.140
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 InterPro:IPR018974 Pfam:PF09371
HOGENOM:HOG000270498 OMA:YKQKRRT Gene3D:1.10.10.650
InterPro:IPR023319 KO:K06959 RefSeq:NP_842808.1 RefSeq:YP_016861.1
ProteinModelPortal:Q81VF3 DNASU:1087362
EnsemblBacteria:EBBACT00000008548 EnsemblBacteria:EBBACT00000016441
GeneID:1087362 GeneID:2819520 KEGG:ban:BA_0255 KEGG:bar:GBAA_0255
PATRIC:18778014 ProtClustDB:CLSK2391234
BioCyc:BANT261594:GJ7F-271-MONOMER Uniprot:Q81VF3
Length = 722
Score = 166 (63.5 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 35/77 (45%), Positives = 50/77 (64%)
Query: 140 VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
+K EDL G G R++ FGAF+D G DGLVH+S+LS +VK +VSVGQ VK
Sbjct: 642 LKLEDLKRGMELEGTARNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVK 701
Query: 200 VRLIEANAETGRISLTM 216
V + + + + GR++L+M
Sbjct: 702 VWVDDIDTKKGRVALSM 718
>TIGR_CMR|BA_0255 [details] [associations]
symbol:BA_0255 "S1 RNA binding domain protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003029 InterPro:IPR006641 Pfam:PF00575
PROSITE:PS50126 SMART:SM00732 EMBL:AE016879 EMBL:AE017334
GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR GO:GO:0006139
GO:GO:0003723 GO:GO:0016788 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 HSSP:P05055
Gene3D:3.30.420.140 Gene3D:1.10.150.310 Gene3D:1.10.3500.10
InterPro:IPR023323 InterPro:IPR023097 InterPro:IPR018974
Pfam:PF09371 HOGENOM:HOG000270498 OMA:YKQKRRT Gene3D:1.10.10.650
InterPro:IPR023319 KO:K06959 RefSeq:NP_842808.1 RefSeq:YP_016861.1
ProteinModelPortal:Q81VF3 DNASU:1087362
EnsemblBacteria:EBBACT00000008548 EnsemblBacteria:EBBACT00000016441
GeneID:1087362 GeneID:2819520 KEGG:ban:BA_0255 KEGG:bar:GBAA_0255
PATRIC:18778014 ProtClustDB:CLSK2391234
BioCyc:BANT261594:GJ7F-271-MONOMER Uniprot:Q81VF3
Length = 722
Score = 166 (63.5 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 35/77 (45%), Positives = 50/77 (64%)
Query: 140 VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
+K EDL G G R++ FGAF+D G DGLVH+S+LS +VK +VSVGQ VK
Sbjct: 642 LKLEDLKRGMELEGTARNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVK 701
Query: 200 VRLIEANAETGRISLTM 216
V + + + + GR++L+M
Sbjct: 702 VWVDDIDTKKGRVALSM 718
>UNIPROTKB|P05055 [details] [associations]
symbol:pnp "polynucleotide phosphorylase monomer"
species:83333 "Escherichia coli K-12" [GO:0006402 "mRNA catabolic
process" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0035438 "cyclic-di-GMP binding" evidence=IDA] [GO:0042802
"identical protein binding" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016020 "membrane" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IEA;IDA]
[GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
evidence=IEA;IDA] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR009019
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005829 GO:GO:0006950 GO:GO:0016020 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR EMBL:U18997
GO:GO:0003723 GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967 SMART:SM00316
SUPFAM:SSF54814 Pfam:PF03725 SUPFAM:SSF55666 EMBL:J02638
eggNOG:COG1185 HOGENOM:HOG000218327 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS BRENDA:2.7.7.8 ProtClustDB:PRK11824
EMBL:X00761 EMBL:M14425 PIR:H65106 RefSeq:NP_417633.4
RefSeq:YP_491351.1 PDB:1SRO PDB:3CDI PDB:3CDJ PDB:3H1C PDBsum:1SRO
PDBsum:3CDI PDBsum:3CDJ PDBsum:3H1C ProteinModelPortal:P05055
SMR:P05055 DIP:DIP-10522N IntAct:P05055 MINT:MINT-244786
PhosSite:P0810422 SWISS-2DPAGE:P05055 PaxDb:P05055 PRIDE:P05055
EnsemblBacteria:EBESCT00000001884 EnsemblBacteria:EBESCT00000002008
EnsemblBacteria:EBESCT00000002009 EnsemblBacteria:EBESCT00000002010
EnsemblBacteria:EBESCT00000015515 GeneID:12933437 GeneID:947672
KEGG:ecj:Y75_p3086 KEGG:eco:b3164 PATRIC:32121746 EchoBASE:EB0736
EcoGene:EG10743 BioCyc:EcoCyc:EG10743-MONOMER
BioCyc:ECOL316407:JW5851-MONOMER BioCyc:MetaCyc:EG10743-MONOMER
EvolutionaryTrace:P05055 Genevestigator:P05055 Uniprot:P05055
Length = 711
Score = 157 (60.3 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 33/87 (37%), Positives = 56/87 (64%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G +TGKV I FGAF+ G +GLVH+S+++D V+ V + +GQEV V+++E +
Sbjct: 622 GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR 681
Query: 208 ETGRISLTMRESDDISKLQQQKDATAS 234
+ GRI L+++E+ + S+ +A A+
Sbjct: 682 Q-GRIRLSIKEATEQSQPAAAPEAPAA 707
>TAIR|locus:2095203 [details] [associations]
symbol:AT3G23700 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0009409 "response to cold" evidence=IEP;RCA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0006098 "pentose-phosphate
shunt" evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0009773 "photosynthetic electron transport in photosystem I"
evidence=RCA] [GO:0009902 "chloroplast relocation" evidence=RCA]
[GO:0010027 "thylakoid membrane organization" evidence=RCA]
[GO:0015995 "chlorophyll biosynthetic process" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] [GO:0042742 "defense response to
bacterium" evidence=RCA] [GO:0042793 "transcription from plastid
promoter" evidence=RCA] InterPro:IPR003029 Pfam:PF00575
PROSITE:PS50126 GO:GO:0005634 GO:GO:0009570 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0009409 EMBL:AP000377 GO:GO:0003723
GO:GO:0005840 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 UniGene:At.6667
eggNOG:COG0539 EMBL:AY049283 EMBL:AY139796 IPI:IPI00535895
RefSeq:NP_566737.1 ProteinModelPortal:Q9LK47 SMR:Q9LK47
IntAct:Q9LK47 STRING:Q9LK47 PaxDb:Q9LK47 PRIDE:Q9LK47
EnsemblPlants:AT3G23700.1 GeneID:821951 KEGG:ath:AT3G23700
TAIR:At3g23700 HOGENOM:HOG000264640 InParanoid:Q9LK47 OMA:GLYHLTG
PhylomeDB:Q9LK47 ProtClustDB:CLSN2688704 Genevestigator:Q9LK47
Uniprot:Q9LK47
Length = 392
Score = 152 (58.6 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 48/170 (28%), Positives = 86/170 (50%)
Query: 125 ESRRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFI----DFGAF-TDGLVHVSR 179
E+R+ + K + P ++++ G F G+V S++ +GAFI D G + GLVHVS
Sbjct: 173 ENRKLILSEKLALWPKYSQNVNVGDVFNGRVGSVEDYGAFIHLRFDDGLYHLTGLVHVSE 232
Query: 180 LSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVR 239
+S ++V+DV ++ G EV+V + + E RI+L++++ +D L+ DKV
Sbjct: 233 VSWDYVQDVRDVLRDGDEVRVIVTNIDKEKSRITLSIKQLEDDPLLETL-------DKVI 285
Query: 240 TTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGF 289
ST P + T + + G LE ++ L + ++ +GF
Sbjct: 286 LKDSSTGSPSLSSNNGDTIEPLPG--LETILEELLKEDGIEAVKINRQGF 333
>CGD|CAL0005606 [details] [associations]
symbol:orf19.1578 species:5476 "Candida albicans" [GO:0030686
"90S preribosome" evidence=IEA] [GO:0032040 "small-subunit
processome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF00575 PROSITE:PS50126 PROSITE:PS50293 SMART:SM00386
CGD:CAL0005606 GO:GO:0003723 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 Gene3D:2.40.50.140 InterPro:IPR012340
EMBL:AACQ01000008 EMBL:AACQ01000007 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539 KO:K14792
RefSeq:XP_722479.1 RefSeq:XP_722620.1 ProteinModelPortal:Q5ALK0
STRING:Q5ALK0 GeneID:3635820 GeneID:3635933 KEGG:cal:CaO19.1578
KEGG:cal:CaO19.9151 Uniprot:Q5ALK0
Length = 1722
Score = 119 (46.9 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 25/88 (28%), Positives = 46/88 (52%)
Query: 155 VRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISL 214
V P G + F + + +S+ FV+D S + +GQ VKVR+++ N E R+ +
Sbjct: 591 VEKFVPNGCIVSFFGNLKAFLPKTEISETFVQDASSYLKIGQIVKVRILDVNKEQKRLVV 650
Query: 215 TMRESDDISKLQQQK-DATASGDKVRTT 241
T+++S ++S Q+ + SG + T
Sbjct: 651 TLKQSSELSNAQKNEISKLVSGKSIVKT 678
Score = 119 (46.9 bits), Expect = 0.00084, Sum P(2) = 0.00084
Identities = 29/79 (36%), Positives = 44/79 (55%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFI--DFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
+DL G F G V S FG F+ D GL H S +S+N V +V S+ G VKV
Sbjct: 1231 DDLQIGDIFEGTVTSTTDFGVFVKLDGTVNVSGLCHHSEISENDVDNVKSLFGTGDRVKV 1290
Query: 201 RLIEANAETGRISLTMRES 219
++++ ++E ++SL M+ S
Sbjct: 1291 KILKIDSEKRQLSLGMKAS 1309
Score = 100 (40.3 bits), Expect = 6.1e-05, Sum P(3) = 6.1e-05
Identities = 27/107 (25%), Positives = 49/107 (45%)
Query: 123 LAESRRSRT-ARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS 181
+A +++S A KS+ PV+ D+ G V+S+ G F+ F GL+ ++
Sbjct: 742 IATAKKSLIDASKSKSFPVEFSDIAVNDVVRGYVKSVTSLGLFVTFTGRLTGLILAKYVT 801
Query: 182 DNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQ 228
N +D+ Q + R++ + E R LT+ S +K +Q
Sbjct: 802 KNANEDLSKKFHKYQSINCRVLSVDKENERFLLTLNNSSSFTKDDEQ 848
Score = 92 (37.4 bits), Expect = 6.4e-07, Sum P(3) = 6.4e-07
Identities = 61/308 (19%), Positives = 121/308 (39%)
Query: 230 DATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGF 289
D ++ ++ + R T K G + + +GQ ++G VKN++ +G ++SL
Sbjct: 1116 DIDSTNKRISVSLR-TDKAGSDKVINSISDLTRGQVIKGFVKNISNNGVYVSLGRSIYAL 1174
Query: 290 LPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISR-GQVTLTMKKEDDVGSNLQLTQGVI 348
+ S+ SD + + + Q V +++ + G++ +T+K E +V L++ +
Sbjct: 1175 VRVSDLSDSYLKDWQ--NFFKPNQPVIGKIVNCKQEGRILMTLK-ESEVNGELKIMKTFD 1231
Query: 349 HAATNP-FVLAFRSNKDISSF--LDERDKSATAAKKSEKPTPIEIGGEVSQMEAGSSIP- 404
F S D F LD + SE + ++ S G +
Sbjct: 1232 DLQIGDIFEGTVTSTTDFGVFVKLDGTVNVSGLCHHSEI-SENDVDNVKSLFGTGDRVKV 1290
Query: 405 ---KVQDQPTSSDDGM-AS--VPSAVGETVEDHEAPSKEKGELADIANRNDDPQNVMSGS 458
K+ + GM AS + + E +D + ++ E+ + +D + S
Sbjct: 1291 KILKIDSEKRQLSLGMKASYFITDSGKEDNDDEDVEMEDASEVGEEEEEGEDHEESESEE 1350
Query: 459 SETLDGALQTIEKETEETTLNQTIEETPSTDVSGELA-EQALSTDG--------PKAGEF 509
+ + + ++ N + +E S D S E + LST+G +A E
Sbjct: 1351 EKEEEDDDDDDIMDVDDNDENDSEDEEQSADESQEKSLSTGLSTNGFDWTASILDQADED 1410
Query: 510 TESQTEDT 517
ES +DT
Sbjct: 1411 EESSDDDT 1418
Score = 83 (34.3 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 27/125 (21%), Positives = 59/125 (47%)
Query: 254 EMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQ 313
++K F +G ++ V N+T ++S+ +G +P + ++DG + L +G
Sbjct: 967 DLKLADFKQGDEVLAFVNNITNGMVWVSISPTIKGRIPMLDLTEDGSIFQDIDNKLPIGN 1026
Query: 314 EVSVRVLRIS-RGQV-TLTMKKE-----DDVGSNLQLTQGVIHAATNPFVLAFRSNKDIS 366
++V+V ++ + Q+ LT +K +DV + +I N ++ +N S
Sbjct: 1027 AINVKVKQVDLQHQILVLTARKNFIEKFEDVRQDQTYPARIIKIKPNHVLVELGNNVIAS 1086
Query: 367 SFLDE 371
SF+ +
Sbjct: 1087 SFVTD 1091
Score = 57 (25.1 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 27/98 (27%), Positives = 39/98 (39%)
Query: 551 EKQIIGEAASTNLSGEIAEQVSVSDSPKDEEVVQNQTDDVIAKDEEQIQTPTTESEIPSA 610
E + E GE E+ S S+ K+EE + DD++ D+ +E E SA
Sbjct: 1326 EMEDASEVGEEEEEGEDHEE-SESEEEKEEE--DDDDDDIMDVDDNDEND--SEDEEQSA 1380
Query: 611 GSLKEKESGPIPDKNG-----SITSSGEEPDVSSSQKT 643
+EK NG SI +E + SS T
Sbjct: 1381 DESQEKSLSTGLSTNGFDWTASILDQADEDEESSDDDT 1418
Score = 45 (20.9 bits), Expect = 2.5e-06, Sum P(3) = 2.5e-06
Identities = 19/74 (25%), Positives = 29/74 (39%)
Query: 573 VSDSPK----DEEVVQNQTDDVIAKDEEQIQTPTTESEIPSAGSLKEKESGPIPDKNGSI 628
++DS K DE+V +V ++EE +ESE + + D N
Sbjct: 1312 ITDSGKEDNDDEDVEMEDASEVGEEEEEGEDHEESESEEEKEEEDDDDDDIMDVDDNDEN 1371
Query: 629 TSSGEEPDVSSSQK 642
S EE SQ+
Sbjct: 1372 DSEDEEQSADESQE 1385
Score = 42 (19.8 bits), Expect = 6.4e-07, Sum P(3) = 6.4e-07
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 589 DVIAKDEEQIQTPTTESEIPSAGSLKEKESGPIPDKNGSITS 630
D +DEE T +E S K+K + DK G + +
Sbjct: 1405 DQADEDEESSDDDTDFTESSKKKS-KKKSKSAVEDKTGDLNT 1445
>FB|FBgn0036203 [details] [associations]
symbol:Muc68D "Mucin 68D" species:7227 "Drosophila
melanogaster" [GO:0016490 "structural constituent of peritrophic
membrane" evidence=ISS] [GO:0005576 "extracellular region"
evidence=IEA] [GO:0008061 "chitin binding" evidence=IEA]
[GO:0006030 "chitin metabolic process" evidence=IEA] [GO:0031012
"extracellular matrix" evidence=ISM] [GO:0005201 "extracellular
matrix structural constituent" evidence=ISM] InterPro:IPR002557
Pfam:PF01607 PROSITE:PS50940 SMART:SM00494 GO:GO:0005576
EMBL:AE014296 eggNOG:NOG12793 GO:GO:0031012 GO:GO:0008061
GO:GO:0005201 CAZy:CBM14 Gene3D:2.170.140.10 SUPFAM:SSF57625
GO:GO:0006030 GeneTree:ENSGT00700000104174 EMBL:AY075323
RefSeq:NP_648504.2 UniGene:Dm.20068 SMR:Q9VTN2 MINT:MINT-900668
STRING:Q9VTN2 EnsemblMetazoa:FBtr0076119 GeneID:39326
KEGG:dme:Dmel_CG6004 UCSC:CG6004-RB CTD:39326 FlyBase:FBgn0036203
InParanoid:Q9VTN2 OMA:STESSQD OrthoDB:EOG4WSTSF GenomeRNAi:39326
NextBio:813085 Uniprot:Q9VTN2
Length = 1514
Score = 158 (60.7 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 95/439 (21%), Positives = 174/439 (39%)
Query: 218 ESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSG 277
E+++ S + +D+T T +++P + +E +T+ QD T ++ + S
Sbjct: 660 EANESSSTESSQDSTTQESSSSTEGPLSTEPSTEANESSSTE--SSQD-STTQESSSSSE 716
Query: 278 AFISLPEGEEGFLPTSEESDDGFANMMGGSSLQ--VGQEVSVRVLRISRGQVTLTMKKED 335
+S E +S ES SS + + E S S + + ++
Sbjct: 717 GPLSTESSTEANESSSTESSQDSTTQESSSSTESPLSTEPSTEANESSSTESSQDSTTQE 776
Query: 336 DVGSNLQLTQGVIHAATNPFVLAFRSNKDISSFLDERDKSATAAKKSEKPTPIEIGGEVS 395
S T+G + +T P A S+ SS + + ++ SE P E E +
Sbjct: 777 SSSS----TEGPL--STEPSTEANESSSTESS---QDSTTQESSSSSEGPLSTESSTEAN 827
Query: 396 QMEAG-SSIPKVQDQPTSSDDGMASVPSAVGETVEDHEAPSKEKGELADIANRNDDPQNV 454
+ + SS + +SS + S S+ T E S + + ++ + P +
Sbjct: 828 ESSSTESSQDSTTQESSSSTEDPLSTESSTEATYESSSTESSQDSTTQESSSSTEGPLST 887
Query: 455 MSGSSETLDGALQTIEKETEETTLNQTIEETP-STDVSGELAEQALSTDGPKAGEFTESQ 513
S S+E + + T + T + + E+P ST+ S E A ++ ST+ + ES
Sbjct: 888 ES-STEGSNESSSTESSQDSTTQESSSSTESPLSTEPSTE-ANESSSTESSQDSTTQESS 945
Query: 514 --TEDTIAKD---EVQILTPAXXXXXXXXXXXALAPEGSVSTEKQIIG--EAASTNLSGE 566
TE ++ + E + + + EG +STE G E++ST S +
Sbjct: 946 SSTEGPLSTESSTEANESSSTESSQDSTTQESSSSTEGPLSTESSTEGSNESSSTESSQD 1005
Query: 567 IAEQVSVS--DSPKDEEVVQNQTDDVIAKDEEQIQTPTTESEIPSAGSLKEKESGPIPDK 624
Q S S +SP E + ++ + + Q T T ES + G L + S ++
Sbjct: 1006 STTQESSSSTESPLSTEP-STEANESSSTESSQDST-TQESSSSTEGPLSTESSTEASNE 1063
Query: 625 NGSITSSGEEPDVSSSQKT 643
+ S SS + SS T
Sbjct: 1064 SSSTESSQDSTTQESSSST 1082
Score = 153 (58.9 bits), Expect = 7.0e-07, P = 7.0e-07
Identities = 91/438 (20%), Positives = 156/438 (35%)
Query: 219 SDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGA 278
++ ++ + +T S T S+S G E T + E + + T+ +
Sbjct: 486 TESSTEATNESSSTESSQDSTTQESSSSSEGPLSTESSTEATNESSSTESSQDSTTQESS 545
Query: 279 FISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISRGQVTLTMKKEDDVG 338
S E P++E ++ S+ Q + L + T +
Sbjct: 546 --SSTESPLSTEPSTEANESSSTESSQDSTTQESSSSTEDPLS-TESSTEATNESSSTES 602
Query: 339 SNLQLTQGVIHAATNPFVLAFRSNKDISSFLDERDKSATAAKKS---EKPTPIEIGGEVS 395
S TQ + P + S E + +T K S E P E E +
Sbjct: 603 SQDSTTQESSSSTEGPLSTESSTEGSNESSSTESSQDSTTQKSSSSTESPLSTEPSTEAN 662
Query: 396 QMEAGSSIPKVQDQPTSSDDGMASVPSAVGETVEDHEAPSKEKGELADIANRNDDPQNVM 455
+ SS QD T P + + E +E+ S E + + + + +
Sbjct: 663 E---SSSTESSQDSTTQESSSSTEGPLSTEPSTEANESSSTESSQDSTTQESSSSSEGPL 719
Query: 456 SGSSETLDGALQTIEKETEETTLNQTIE-ETP-STDVSGELAEQALSTDGPKAGEFTESQ 513
S S T + E + TT + E+P ST+ S E A ++ ST+ + ES
Sbjct: 720 STESSTEANESSSTESSQDSTTQESSSSTESPLSTEPSTE-ANESSSTESSQDSTTQESS 778
Query: 514 --TEDTIAKD---EVQILTPAXXXXXXXXXXXALAPEGSVSTEKQI-IGEAASTNLSGEI 567
TE ++ + E + + + EG +STE E++ST S +
Sbjct: 779 SSTEGPLSTEPSTEANESSSTESSQDSTTQESSSSSEGPLSTESSTEANESSSTESSQDS 838
Query: 568 AEQVSVSDSPKDEEVVQNQTDDVI-AKDEEQIQTPTT-ESEIPSAGSLKEKESGPIPDKN 625
Q S S S +D ++ T+ + E Q TT ES + G L + S +++
Sbjct: 839 TTQES-SSSTEDPLSTESSTEATYESSSTESSQDSTTQESSSSTEGPLSTESSTEGSNES 897
Query: 626 GSITSSGEEPDVSSSQKT 643
S SS + SS T
Sbjct: 898 SSTESSQDSTTQESSSST 915
Score = 145 (56.1 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 82/417 (19%), Positives = 152/417 (36%)
Query: 205 ANAETGRISL-TMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKG 263
+++ G +S + E+++ S + +D+T T +++P + +E +T+
Sbjct: 712 SSSSEGPLSTESSTEANESSSTESSQDSTTQESSSSTESPLSTEPSTEANESSSTE--SS 769
Query: 264 QDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSL-QVGQEVSVRVLRI 322
QD + + G + P E ++E S D SS + E S
Sbjct: 770 QDSTTQESSSSTEGPLSTEPSTEANESSSTESSQDSTTQESSSSSEGPLSTESSTEA--- 826
Query: 323 SRGQVTLTMKKEDDVGSNLQLTQGVIHAATNPFVLAFRSNKDI---SSFLDERDKSATAA 379
+ + T +D TQ + +P L+ S+ + SS + S T
Sbjct: 827 --NESSSTESSQDST------TQESSSSTEDP--LSTESSTEATYESSSTESSQDSTTQE 876
Query: 380 KKSEKPTPIEIGGEVSQMEAGSSIPKVQDQPTSSDDGMASVPSAVGETVEDHEAPSKEKG 439
S P+ SS QD T P + + E +E+ S E
Sbjct: 877 SSSSTEGPLSTESSTEGSNESSSTESSQDSTTQESSSSTESPLSTEPSTEANESSSTESS 936
Query: 440 ELADIANRNDDPQNVMSGSSETLDGALQTIEKETEETTLNQTIE-ETP-STDVSGELAEQ 497
+ + + + +S S T + E + TT + E P ST+ S E + +
Sbjct: 937 QDSTTQESSSSTEGPLSTESSTEANESSSTESSQDSTTQESSSSTEGPLSTESSTEGSNE 996
Query: 498 ALSTDGPKAGEFTESQTEDTIAKDEVQILTPAXXXXXXXXXXXALAPEGSVSTEKQIIGE 557
+ ST+ + T+ + T + + T A + E S STE + E
Sbjct: 997 SSSTESSQDST-TQESSSSTESPLSTEPSTEANESSSTESSQDSTTQESSSSTEGPLSTE 1055
Query: 558 AASTNLSGEIAEQVSVSDSPKDEEVVQNQTDDVIAKDE--EQIQTPTTESEIPSAGS 612
+ ST S E + S DS E + T+ ++ + E Q P+ +P++ +
Sbjct: 1056 S-STEASNESSSTESSQDSTTQES--SSSTEGPLSTESSTEVTQEPSPTESLPNSST 1109
Score = 134 (52.2 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 93/462 (20%), Positives = 171/462 (37%)
Query: 205 ANAETGRISLTM--RESDDISKLQQQK--DATASGDKVRTTRRSTSKPGQKRDEMKTTKF 260
++AE+ + S T R S DIS + D S + + T ST+ + +
Sbjct: 189 SSAESIQESTTQGSRSSTDISLSTEASLDDIILSSESIVPTESSTTIISSSTEGSWESHI 248
Query: 261 VKGQDLEGTVKNLTRSGAFISLPEGEEGF-LPTSEESDDGFANMMGGSSLQVGQEVSVRV 319
+ V++L + + E P S E G + SS + + +
Sbjct: 249 STDSSIGSKVESLLIEALYSLIQESSSSSESPVSNEPSTGATD--DSSSTESLPDSTQES 306
Query: 320 LRISRGQVTLTMKKE--DDVGSNLQLTQGVIHAATNPFVLAFRSNK-----DISSFLDER 372
S V+ + E ++ S+ L +++ +F++ D SS + +
Sbjct: 307 SSSSESPVSFELSTEATNESSSSESLPNSSTQDSSSSTETSFQTESTTDATDESSSTESQ 366
Query: 373 DKSATAAKKSEKPTPIEIGGEVSQMEAGSSIPKVQDQPT----SSDDGMASVPSAVGETV 428
S T S P+ + + SS QD T SS +G S S+ T
Sbjct: 367 PDSTTQESSSSTEGPLSTESSTAVTDQSSSTESSQDSTTQESSSSTEGPLSTESSTEATN 426
Query: 429 EDHEAPSKEKGELADIANRNDDPQNVMSGSSETLDGALQTIEKETEETTLNQTIEETPST 488
E S + + ++ + P + S S+E T E + E++ + T +E+ S+
Sbjct: 427 ESSSTESSQDSTTQESSSSTEGPLSTES-STEA------TNESSSTESSQDSTTQES-SS 478
Query: 489 DVSGELAEQALSTDGPKAGEFTESQTEDTIAKDEVQILTPAXXXXXXXXXXXALAPEGSV 548
G L+ ++ ST+ TES + T + P + + E S
Sbjct: 479 STEGPLSTES-STEATNESSSTESSQDSTTQESSSSSEGPLSTESSTEATNESSSTESSQ 537
Query: 549 STEKQIIGEAASTNLSGEI---AEQVSVSDSPKDEEVVQNQ--TDDVIAKDEEQIQTPTT 603
+ Q + + LS E A + S ++S +D ++ T+D ++ + T +
Sbjct: 538 DSTTQESSSSTESPLSTEPSTEANESSSTESSQDSTTQESSSSTEDPLSTESSTEATNES 597
Query: 604 ESEIPSAGSLKEKES----GPIPDKNGSITSSGEEPDVSSSQ 641
S S S ++ S GP+ ++ S S E SSQ
Sbjct: 598 SSTESSQDSTTQESSSSTEGPLSTES-STEGSNESSSTESSQ 638
Score = 132 (51.5 bits), Expect = 0.00013, P = 0.00013
Identities = 70/332 (21%), Positives = 142/332 (42%)
Query: 323 SRGQVTLTMKKEDDVGSNLQLTQGVIHAATNPFVLAFRSNKDISSFLDERDKSATAAKKS 382
SR +++ E + + ++ ++ ++ +++ + S + D S + +S
Sbjct: 202 SRSSTDISLSTEASLDDIILSSESIVPTESSTTIISSSTEGSWESHIST-DSSIGSKVES 260
Query: 383 EKPTPIEIGGEVSQMEAGSSIPKVQDQPTS--SDDGMA--SVPSAVGETVEDHEAPSKEK 438
IE + Q + SS V ++P++ +DD + S+P + E+ E+P
Sbjct: 261 ---LLIEALYSLIQESSSSSESPVSNEPSTGATDDSSSTESLPDSTQESSSSSESPVSF- 316
Query: 439 GELA-DIANRNDDPQNVMSGSSETLDGALQTIEKETEETTLNQTIEETPSTDVSGELA-- 495
EL+ + N + +++ + S++ + +T +TE TT +E+ ST+ +
Sbjct: 317 -ELSTEATNESSSSESLPNSSTQDSSSSTET-SFQTESTT--DATDESSSTESQPDSTTQ 372
Query: 496 EQALSTDGPKAGEFTESQTEDTIAKDEVQILTPAXXXXXXXXXXXALAPEGSVSTEK--Q 553
E + ST+GP + E + + T+ + + + Q T EG +STE +
Sbjct: 373 ESSSSTEGPLSTESSTAVTDQSSSTESSQDSTTQESSSST---------EGPLSTESSTE 423
Query: 554 IIGEAASTNLSGEIAEQVSVS--DSPKDEEVVQNQTDDVIAKDEEQIQTPTTESEIPSAG 611
E++ST S + Q S S + P E T++ + + Q T T ES + G
Sbjct: 424 ATNESSSTESSQDSTTQESSSSTEGPLSTESSTEATNESSSTESSQDST-TQESSSSTEG 482
Query: 612 SLKEKESGPIPDKNGSITSSGEEPDVSSSQKT 643
L + S +++ S SS + SS +
Sbjct: 483 PLSTESSTEATNESSSTESSQDSTTQESSSSS 514
Score = 132 (51.5 bits), Expect = 0.00013, P = 0.00013
Identities = 97/468 (20%), Positives = 170/468 (36%)
Query: 193 SVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKR 252
S+G +V+ LIEA + S + ES +S + AT + ST +
Sbjct: 253 SIGSKVESLLIEALYSLIQESSSSSESP-VSN-EPSTGATDDSSSTESLPDSTQESSSSS 310
Query: 253 DEMKTTKF-VKGQDLEGTVKNLTRSGAFISLPEGEEGFLP--TSEESDDGFANMMGGSSL 309
+ + + + + + ++L S S E F T++ +D+ + S
Sbjct: 311 ESPVSFELSTEATNESSSSESLPNSSTQDSSSSTETSFQTESTTDATDESSSTESQPDST 370
Query: 310 QVGQEVSVRVLRISRGQVTLTMKKEDDVGSNLQLTQGVIHAATNPFVLAFRSNKDI---S 366
S + +T + S TQ + P L+ S+ + S
Sbjct: 371 TQESSSSTEGPLSTESSTAVTDQSSSTESSQDSTTQESSSSTEGP--LSTESSTEATNES 428
Query: 367 SFLDERDKSATAAKKSEKPTPIEIGGEVSQMEAGSSIPKVQDQPT----SSDDGMASVPS 422
S + S T S P+ SS QD T SS +G S S
Sbjct: 429 SSTESSQDSTTQESSSSTEGPLSTESSTEATNESSSTESSQDSTTQESSSSTEGPLSTES 488
Query: 423 AVGETVEDHEAPSKEKGELADIANRNDDPQNVMSGSSETLDGALQTIEKETEETTLNQTI 482
+ T E S + + ++ ++ P + S S+E + + T + T + +
Sbjct: 489 STEATNESSSTESSQDSTTQESSSSSEGPLSTES-STEATNESSSTESSQDSTTQESSSS 547
Query: 483 EETP-STDVSGELAEQALSTDGPKAGEFTESQ--TEDTIAKDEVQILTPAXXXXXXXXXX 539
E+P ST+ S E A ++ ST+ + ES TED ++ + T
Sbjct: 548 TESPLSTEPSTE-ANESSSTESSQDSTTQESSSSTEDPLSTESSTEAT--NESSSTESSQ 604
Query: 540 XALAPEGSVSTEKQIIGEAASTNLSGEIAEQVSVSDSPKDEEVVQNQTDDVIAKDEEQIQ 599
+ E S STE + E+ ST S E + S DS + ++ E +
Sbjct: 605 DSTTQESSSSTEGPLSTES-STEGSNESSSTESSQDSTTQKSSSSTESPLSTEPSTEANE 663
Query: 600 TPTTESEIPSAGSLKEKES-GPI---PDKNGSITSSGEEPDVSSSQKT 643
+ +TES S + GP+ P + +SS E S++Q++
Sbjct: 664 SSSTESSQDSTTQESSSSTEGPLSTEPSTEANESSSTESSQDSTTQES 711
Score = 127 (49.8 bits), Expect = 0.00045, P = 0.00045
Identities = 87/437 (19%), Positives = 152/437 (34%)
Query: 219 SDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGA 278
++ ++ + +T S T S+S G E T + E + + T+ +
Sbjct: 452 TESSTEATNESSSTESSQDSTTQESSSSTEGPLSTESSTEATNESSSTESSQDSTTQESS 511
Query: 279 FISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISRGQVTLTMKKEDDVG 338
S EG ++E +++ + S S +S T +
Sbjct: 512 --SSSEGPLSTESSTEATNESSSTESSQDSTTQESSSSTES-PLSTEPSTEANESSSTES 568
Query: 339 SNLQLTQGVIHAATNPFVLAFRSNKDI---SSFLDERDKSATAAKKSEKPTPIEIGGEVS 395
S TQ + +P L+ S+ + SS + S T S P+
Sbjct: 569 SQDSTTQESSSSTEDP--LSTESSTEATNESSSTESSQDSTTQESSSSTEGPLSTESSTE 626
Query: 396 QMEAGSSIPKVQDQPTSSDDGMASVPSAVGETVEDHEAPSKEKGELADIANRNDDPQNVM 455
SS QD T P + + E +E+ S E + + + + +
Sbjct: 627 GSNESSSTESSQDSTTQKSSSSTESPLSTEPSTEANESSSTESSQDSTTQESSSSTEGPL 686
Query: 456 SGSSETLDGALQTIEKETEETTL-NQTIEETP-STDVSGELAEQALSTDGPKAGEFTESQ 513
S T + E + TT + + E P ST+ S E A ++ ST+ + ES
Sbjct: 687 STEPSTEANESSSTESSQDSTTQESSSSSEGPLSTESSTE-ANESSSTESSQDSTTQESS 745
Query: 514 --TEDTIAKD---EVQILTPAXXXXXXXXXXXALAPEGSVSTEKQI-IGEAASTNLSGEI 567
TE ++ + E + + + EG +STE E++ST S +
Sbjct: 746 SSTESPLSTEPSTEANESSSTESSQDSTTQESSSSTEGPLSTEPSTEANESSSTESSQDS 805
Query: 568 AEQVSVSDSPKDEEVVQNQTDDVIAKDEEQIQTPTT-ESEIPSAGSLKEKESGPIPDKNG 626
Q S S S + ++ T+ + E Q TT ES + L + S ++
Sbjct: 806 TTQES-SSSSEGPLSTESSTEANESSSTESSQDSTTQESSSSTEDPLSTESSTEATYESS 864
Query: 627 SITSSGEEPDVSSSQKT 643
S SS + SS T
Sbjct: 865 STESSQDSTTQESSSST 881
>TIGR_CMR|CPS_2207 [details] [associations]
symbol:CPS_2207 "polyribonucleotide
nucleotidyltransferase" species:167879 "Colwellia psychrerythraea
34H" [GO:0004654 "polyribonucleotide nucleotidyltransferase
activity" evidence=ISS] [GO:0006402 "mRNA catabolic process"
evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
GO:GO:0006396 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
ProtClustDB:PRK11824 RefSeq:YP_268932.1 ProteinModelPortal:Q482T5
SMR:Q482T5 STRING:Q482T5 GeneID:3518463 KEGG:cps:CPS_2207
PATRIC:21467529 BioCyc:CPSY167879:GI48-2277-MONOMER Uniprot:Q482T5
Length = 705
Score = 153 (58.9 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 30/72 (41%), Positives = 51/72 (70%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G +TGKV I FGAF++ DGLVH+S++S+ V +V +++ GQEVKV+++E +
Sbjct: 622 GTLYTGKVVRIVDFGAFVNVLPGKDGLVHISQISEERVNNVSEVLTEGQEVKVKVLEVDR 681
Query: 208 ETGRISLTMRES 219
+ GR+ L+++E+
Sbjct: 682 Q-GRVRLSIKEA 692
>TIGR_CMR|CJE_0972 [details] [associations]
symbol:CJE_0972 "ribosomal protein S1" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 ProtClustDB:PRK06299
RefSeq:YP_178970.1 ProteinModelPortal:Q5HUR5 STRING:Q5HUR5
GeneID:3231483 KEGG:cjr:CJE0972 PATRIC:20043727 OMA:SRRYPQG
BioCyc:CJEJ195099:GJC0-992-MONOMER Uniprot:Q5HUR5
Length = 556
Score = 125 (49.1 bits), Expect = 0.00021, P = 0.00021
Identities = 25/71 (35%), Positives = 43/71 (60%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS-DNFVKDVGSIVSVGQEVKVRLIEAN 206
G T V +I+P+GAF+D G +G +H+S +S D +K+ ++ GQE+ V +IE N
Sbjct: 288 GDTIKVIVSNIEPYGAFVDLGNDIEGFLHISEISWDKNIKNPKDYINKGQEIDVEVIEIN 347
Query: 207 AETGRISLTMR 217
R+ +++R
Sbjct: 348 PNERRLRVSLR 358
Score = 117 (46.2 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 37/120 (30%), Positives = 62/120 (51%)
Query: 122 TLAESRRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS 181
TL + RR R + + + EDLI G V+ I +G F+D G DGLVH S +S
Sbjct: 184 TLDDERRKRKELINNV--AQQEDLIEGI-----VKKITTYGMFVDVGG-VDGLVHYSEIS 235
Query: 182 DNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRES--DDISKLQQQKDATASGDKVR 239
+ G++ G +V V++I+ + E +SL+++ + D S++ KD GD ++
Sbjct: 236 YKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLSIKAALPDPWSEI---KDTLDVGDTIK 292
Score = 80 (33.2 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 26/71 (36%), Positives = 36/71 (50%)
Query: 254 EMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSS-LQVG 312
E+K T V G ++ V N+ GAF+ L EGFL SE S D N+ + G
Sbjct: 280 EIKDTLDV-GDTIKVIVSNIEPYGAFVDLGNDIEGFLHISEISWD--KNIKNPKDYINKG 336
Query: 313 QEVSVRVLRIS 323
QE+ V V+ I+
Sbjct: 337 QEIDVEVIEIN 347
>TIGR_CMR|DET_0970 [details] [associations]
symbol:DET_0970 "polyribonucleotide
nucleotidyltransferase" species:243164 "Dehalococcoides ethenogenes
195" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
[GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR009019 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
GO:GO:0006396 EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 SUPFAM:SSF54814 Pfam:PF03725 SUPFAM:SSF55666
HSSP:Q91WJ8 eggNOG:COG1185 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
ProtClustDB:PRK11824 RefSeq:YP_181693.1 ProteinModelPortal:Q3Z7V6
SMR:Q3Z7V6 STRING:Q3Z7V6 GeneID:3229678 KEGG:det:DET0970
PATRIC:21608989 BioCyc:DETH243164:GJNF-971-MONOMER Uniprot:Q3Z7V6
Length = 720
Score = 151 (58.2 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 30/75 (40%), Positives = 51/75 (68%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+D+ G+ +TGKV I FGAF++ +G+VH+S L+D+ V+ V +V VG E+ V++
Sbjct: 615 KDVEAGSVYTGKVTRIMTFGAFVEILPGKEGMVHISELADHRVEKVEDVVKVGDEITVKV 674
Query: 203 IEANAETGRISLTMR 217
E +++ GRI+L+ R
Sbjct: 675 TEIDSQ-GRINLSRR 688
>UNIPROTKB|Q9KU76 [details] [associations]
symbol:pnp "Polyribonucleotide nucleotidyltransferase"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
evidence=ISS] [GO:0006401 "RNA catabolic process" evidence=ISS]
HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR009019 InterPro:IPR012162
InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 Pfam:PF03726
PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 SUPFAM:SSF54814
Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS ProtClustDB:PRK11824 PIR:E82298
RefSeq:NP_230296.1 ProteinModelPortal:Q9KU76 SMR:Q9KU76
PRIDE:Q9KU76 DNASU:2615437 GeneID:2615437 KEGG:vch:VC0647
PATRIC:20080407 Uniprot:Q9KU76
Length = 709
Score = 150 (57.9 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 30/76 (39%), Positives = 51/76 (67%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G +TGKV + FGAF+ DGLVH+S+++D V+ V ++ GQEV+V+++E +
Sbjct: 623 GVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRVEKVSDYLTEGQEVQVKVLEIDR 682
Query: 208 ETGRISLTMRESDDIS 223
+ GR+ L+M+E+ + S
Sbjct: 683 Q-GRVRLSMKEAVETS 697
>TIGR_CMR|VC_0647 [details] [associations]
symbol:VC_0647 "polyribonucleotide nucleotidyltransferase"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
[GO:0006401 "RNA catabolic process" evidence=ISS] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR009019 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401 GO:GO:0006396
GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 HSSP:P05055 SUPFAM:SSF54814 Pfam:PF03725
SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS ProtClustDB:PRK11824 PIR:E82298
RefSeq:NP_230296.1 ProteinModelPortal:Q9KU76 SMR:Q9KU76
PRIDE:Q9KU76 DNASU:2615437 GeneID:2615437 KEGG:vch:VC0647
PATRIC:20080407 Uniprot:Q9KU76
Length = 709
Score = 150 (57.9 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 30/76 (39%), Positives = 51/76 (67%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G +TGKV + FGAF+ DGLVH+S+++D V+ V ++ GQEV+V+++E +
Sbjct: 623 GVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRVEKVSDYLTEGQEVQVKVLEIDR 682
Query: 208 ETGRISLTMRESDDIS 223
+ GR+ L+M+E+ + S
Sbjct: 683 Q-GRVRLSMKEAVETS 697
>TIGR_CMR|BA_1519 [details] [associations]
symbol:BA_1519 "ribosomal protein S1" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 KO:K02945 HOGENOM:HOG000044053 ProtClustDB:PRK06676
RefSeq:NP_843970.1 RefSeq:YP_018142.1 RefSeq:YP_027677.1
ProteinModelPortal:Q81SX5 DNASU:1083667
EnsemblBacteria:EBBACT00000012330 EnsemblBacteria:EBBACT00000016288
EnsemblBacteria:EBBACT00000024070 GeneID:1083667 GeneID:2817299
GeneID:2849711 KEGG:ban:BA_1519 KEGG:bar:GBAA_1519 KEGG:bat:BAS1408
OMA:DMMEEIN BioCyc:BANT260799:GJAJ-1482-MONOMER
BioCyc:BANT261594:GJ7F-1544-MONOMER Uniprot:Q81SX5
Length = 382
Score = 145 (56.1 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 33/99 (33%), Positives = 62/99 (62%)
Query: 124 AESRRSRTARKSEMP-PVKNE--DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRL 180
A+++R + K+ P P +N ++ G G V+ + FGAF++ +GLVHVS++
Sbjct: 247 ADTQRISLSIKAAQPGPWENVGGEVKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQI 306
Query: 181 SDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRES 219
++ VK+ ++ +GQEVKV+++E + RISL+++E+
Sbjct: 307 ANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEA 345
Score = 137 (53.3 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 27/70 (38%), Positives = 46/70 (65%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G G V+ + FGAF++ G DGLVH+S++S V+ ++ GQ+VKV+++ +A
Sbjct: 189 GDVVEGTVQRLTDFGAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDA 247
Query: 208 ETGRISLTMR 217
+T RISL+++
Sbjct: 248 DTQRISLSIK 257
Score = 85 (35.0 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 31/113 (27%), Positives = 58/113 (51%)
Query: 222 ISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFIS 281
I +L ++K+ K SK K++ + + K +G +EGTV+ LT GAF++
Sbjct: 153 IVELDREKNRVILSHKAVVELELDSK---KKEAISSLK--EGDVVEGTVQRLTDFGAFVN 207
Query: 282 LPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISRG--QVTLTMK 332
+ G +G + S+ S + L+ GQ+V V+VL + +++L++K
Sbjct: 208 VG-GVDGLVHISQISHERVEQP--SEVLEQGQKVKVKVLSVDADTQRISLSIK 257
Score = 78 (32.5 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 18/79 (22%), Positives = 42/79 (53%)
Query: 142 NEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVR 201
+++L G TG V ++ ++ G TDG++ +S L++ ++ +V + Q ++++
Sbjct: 12 SKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVELDQTLELK 71
Query: 202 LIEANAETGRISLTMRESD 220
+I+ E + L+ R D
Sbjct: 72 VIKL--EENDLVLSKRAVD 88
>TAIR|locus:2145860 [details] [associations]
symbol:RPS1 "ribosomal protein S1" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0016020
"membrane" evidence=IDA] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0006098 "pentose-phosphate shunt" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0015995
"chlorophyll biosynthetic process" evidence=RCA] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] InterPro:IPR003029 Pfam:PF00575
PROSITE:PS50126 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009570 GO:GO:0016020 GO:GO:0003723 GO:GO:0005840
GO:GO:0009579 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 KO:K02945
EMBL:AF370232 EMBL:AY059914 EMBL:AY088230 EMBL:AY142540
IPI:IPI00524792 RefSeq:NP_850903.1 UniGene:At.24389
ProteinModelPortal:Q93VC7 SMR:Q93VC7 STRING:Q93VC7
World-2DPAGE:0003:Q93VC7 PRIDE:Q93VC7 ProMEX:Q93VC7
EnsemblPlants:AT5G30510.1 GeneID:833138 KEGG:ath:AT5G30510
TAIR:At5g30510 HOGENOM:HOG000232530 InParanoid:Q93VC7 OMA:SEISHEH
PhylomeDB:Q93VC7 ProtClustDB:CLSN2680335 ArrayExpress:Q93VC7
Genevestigator:Q93VC7 Uniprot:Q93VC7
Length = 416
Score = 144 (55.7 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 26/71 (36%), Positives = 49/71 (69%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G+ G V+S++P+GAFID G +GL+HVS++S + V D+ +++ G +KV ++ +
Sbjct: 264 GSVVLGVVQSLKPYGAFIDIGGI-NGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDR 322
Query: 208 ETGRISLTMRE 218
+ GR+SL+ ++
Sbjct: 323 DRGRVSLSTKK 333
>CGD|CAL0003874 [details] [associations]
symbol:PGA55 species:5476 "Candida albicans" [GO:0009986
"cell surface" evidence=ISS] [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
CGD:CAL0003874 GO:GO:0009986 EMBL:AACQ01000152 RefSeq:XP_712591.1
GeneID:3645784 KEGG:cal:CaO19.207 Uniprot:Q59SG9
Length = 1404
Score = 149 (57.5 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 95/487 (19%), Positives = 189/487 (38%)
Query: 181 SDNFVKDVGSIVSVGQEVKVRL-IEANAETGRISLTMRESDDIS---KLQQQKDATASGD 236
S V +VS EV + +++E S + S ++S ++ T+S +
Sbjct: 313 SSEVVSSSSEVVSSSSEVSSSSEVSSSSEVVSSSSEVSSSSEVSSSSEVSSSSQVTSSSE 372
Query: 237 KVRTTRR---STSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTS 293
V ++ S+S+ E+ ++ V E + + S + +S S
Sbjct: 373 IVSSSSEVSSSSSEVVSSSSEVSSSSEVVSSSSEVSSSSEVSSSSEVSSSSEVSSSSEVS 432
Query: 294 EESDDGFANMMGGSSLQVGQEVSVRVLRISRGQVTLTMKKEDDVGSNLQLTQGVIHAATN 353
S ++ + SS +V V V S + + +V S+ Q+T +++
Sbjct: 433 SSSQVISSSEVVSSSSEVSSSSEV-VSSSSEVSSSSEVSSSSEVSSSSQVTSSSEIVSSS 491
Query: 354 PFVLAFRSNKDISSFLDERDKSATAAKKSEKPTPIEIGG--EVS---QMEAGSSIPKVQD 408
V + S++ +SS + S + SE + E+ EVS Q+ + S I
Sbjct: 492 SEVSS-SSSEVVSSSSEVSSSSEVVSSSSEVSSSSEVSSSSEVSSSSQVISSSEIVSSSS 550
Query: 409 QPTSSDDGMASVPSAVGETVE-----DHEAPSKEKGELADIANRND--DPQNVMSGSSET 461
+ +SS + S S V + E + S E +++++ + V+S SSE
Sbjct: 551 EVSSSSSEVVSSSSEVSSSSEVVSSSSEVSSSSEVSSSSEVSSSSQVISSSEVVSSSSEV 610
Query: 462 LDGA--LQTIEKETEETTLNQTIEETPSTDVSGELAEQALSTDGPKAGEFTESQTEDTIA 519
+ + + + + + + ++ + E + S++VS + S + E + S +E +
Sbjct: 611 VSSSSEVSSSSEVSSSSEVSSSSEVSSSSEVSSSSQVTSSSEIVSSSSEVSSSSSEVVSS 670
Query: 520 KDEVQILTPAXXXXXXXXXXXALAPEGSVSTEKQIIGEAASTNLSGEIAEQVS-VSDSPK 578
EV + ++ VS+ Q+I + + S E+ S VS S +
Sbjct: 671 SSEVSSSSEVVSSSSEVSSSSEVSSSSEVSSSSQVISSSEVVSSSSEVVSSSSEVSSSSE 730
Query: 579 DEEVVQNQTDDVIAKDEE---QIQTPTTESEIPSAGSLKEKESGPIPDKNGSITSSGEEP 635
+ + ++ E + ++ SEI S+ S E S + TSS E
Sbjct: 731 VSSSSEVSSSSEVSSSSEVSSSSEVTSSSSEIISSSSSSEVTSSSEVSSSSQATSSSSEI 790
Query: 636 DVSSSQK 642
+SSS K
Sbjct: 791 -ISSSSK 796
Score = 146 (56.5 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 78/469 (16%), Positives = 178/469 (37%)
Query: 181 SDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRT 240
S + V IVS EV E + + +S + S++ + ++S +
Sbjct: 236 SSSQVTSSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEVVSSSSEVSSSSEVSSSSEV--- 292
Query: 241 TRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGF 300
S+S+ + +++ + ++ + + S + +S E + +S E
Sbjct: 293 --SSSSEVSSSSEVSSSSQVISSSEVVSSSSEVVSSSSEVS--SSSE--VSSSSEVVSSS 346
Query: 301 ANMMGGSSLQVGQEVSVRVLRISRGQVTLTMKKEDDVGSNLQLTQGVIHAATNPFVLAFR 360
+ + S + EVS S ++ + + S + + + +++ V++
Sbjct: 347 SEVSSSSEVSSSSEVSSSSQVTSSSEIVSSSSEVSSSSSEVVSSSSEVSSSSE--VVS-- 402
Query: 361 SNKDISSFLDERDKSATAAKKSEKPTPIEIGGEVSQMEAGSSIPKVQDQPTSSDDGMASV 420
S+ ++SS E S+ + SE + E+ SQ+ + S + + +SS + ++S
Sbjct: 403 SSSEVSSS-SEVSSSSEVSSSSEVSSSSEVSSS-SQVISSSEVVSSSSEVSSSSEVVSSS 460
Query: 421 PSAVGETVEDHEAPSKEKGELADIANRNDDPQNVMSGSSETLDGALQTIEKETEETTLNQ 480
+ + ++ + V S SSE + + + + +E + +
Sbjct: 461 SEVSSSSEVSSSSEVSSSSQVTSSSEIVSSSSEVSSSSSEVVSSSSE-VSSSSEVVSSSS 519
Query: 481 TIEETPSTDVSGELAE--QALSTDG--PKAGEFTESQTEDTIAKDEVQILTPAXXXXXXX 536
+ + S E++ Q +S+ + E + S +E + EV +
Sbjct: 520 EVSSSSEVSSSSEVSSSSQVISSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEVVSSSSEV 579
Query: 537 XXXXALAPEGSVSTEKQIIGEAASTNLSGEI---AEQVSVSDSPKDEEVVQNQTDDVIAK 593
++ VS+ Q+I + + S E+ + +VS S V + ++ +
Sbjct: 580 SSSSEVSSSSEVSSSSQVISSSEVVSSSSEVVSSSSEVSSSSEVSSSSEVSSSSEVSSSS 639
Query: 594 DEEQIQTPTTESEIPSAGSLKEKESGPIPDKNGSITSSGEEPDVSSSQK 642
+ T+ SEI S+ S S + + ++SS E VSSS +
Sbjct: 640 EVSSSSQVTSSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEV--VSSSSE 686
Score = 129 (50.5 bits), Expect = 0.00025, P = 0.00025
Identities = 79/469 (16%), Positives = 183/469 (39%)
Query: 190 SIVSVGQEVKVRL-IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRR--STS 246
S VS EV + +++E S + S+ +S + ++S + V ++ S+S
Sbjct: 411 SEVSSSSEVSSSSEVSSSSEVSSSSQVISSSEVVSS---SSEVSSSSEVVSSSSEVSSSS 467
Query: 247 KPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGG 306
+ + +++ ++ + ++ S + + E + +S E + +
Sbjct: 468 EVSSSSEVSSSSQVTSSSEIVSSSSEVSSSSSEVVSSSSE---VSSSSEVVSSSSEVSSS 524
Query: 307 SSLQVGQEVSVRVLRISRGQVT-----LTMKKEDDVGSNLQLTQG--VIHAATNPFVLA- 358
S + EVS IS ++ ++ + V S+ +++ V+ +++ +
Sbjct: 525 SEVSSSSEVSSSSQVISSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEVVSSSSEVSSSSE 584
Query: 359 FRSNKDISSFLDERDKSATAAKKSEKPTPIEIGGEVSQMEAGSSIPKVQDQPTSSDDGMA 418
S+ ++SS S + SE + S++ + S + + +SS+ +
Sbjct: 585 VSSSSEVSSSSQVISSSEVVSSSSEVVSSSSEVSSSSEVSSSSEVSSSSEVSSSSEVSSS 644
Query: 419 SVPSAVGETVEDHEAPSKEKGELADIANRNDDPQNVMSGSSETLDGALQTIEKETEETTL 478
S ++ E V S E+ ++ V+S SSE + + +E ++
Sbjct: 645 SQVTSSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEVVSSSSEVSSSS--EVSSSSEVSSS 702
Query: 479 NQTIEETPSTDVSGELAEQA--LSTDGPKAGEFTESQTEDTIAKDEVQILTPAXXXXXXX 536
+Q I + S E+ + +S+ + S + + + EV + +
Sbjct: 703 SQVISSSEVVSSSSEVVSSSSEVSSSSEVSSSSEVSSSSEVSSSSEV---SSSSEVTSSS 759
Query: 537 XXXXALAPEGSVSTEKQIIGEAASTNLSGEIAEQVS-VSDSPK---DEEVVQNQTDDVIA 592
+ + V++ ++ + +T+ S EI S VS S + E + + T +V +
Sbjct: 760 SEIISSSSSSEVTSSSEVSSSSQATSSSSEIISSSSKVSSSSEITSSSECISS-TSEVNS 818
Query: 593 KDEEQIQTPTTESEIPSAGSLKEKESGPIPDKNGSITSSGEEPDVSSSQ 641
E + + + SE+ S+ + S + +TSS E SSS+
Sbjct: 819 SSSEVVSSSSASSEVVSSSTECISSSSEAISSSSQVTSSSTECISSSSE 867
>UNIPROTKB|Q59SG9 [details] [associations]
symbol:PGA55 "Flocculin-like protein" species:237561
"Candida albicans SC5314" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0009986 "cell surface" evidence=ISS] CGD:CAL0003874
GO:GO:0009986 EMBL:AACQ01000152 RefSeq:XP_712591.1 GeneID:3645784
KEGG:cal:CaO19.207 Uniprot:Q59SG9
Length = 1404
Score = 149 (57.5 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 95/487 (19%), Positives = 189/487 (38%)
Query: 181 SDNFVKDVGSIVSVGQEVKVRL-IEANAETGRISLTMRESDDIS---KLQQQKDATASGD 236
S V +VS EV + +++E S + S ++S ++ T+S +
Sbjct: 313 SSEVVSSSSEVVSSSSEVSSSSEVSSSSEVVSSSSEVSSSSEVSSSSEVSSSSQVTSSSE 372
Query: 237 KVRTTRR---STSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTS 293
V ++ S+S+ E+ ++ V E + + S + +S S
Sbjct: 373 IVSSSSEVSSSSSEVVSSSSEVSSSSEVVSSSSEVSSSSEVSSSSEVSSSSEVSSSSEVS 432
Query: 294 EESDDGFANMMGGSSLQVGQEVSVRVLRISRGQVTLTMKKEDDVGSNLQLTQGVIHAATN 353
S ++ + SS +V V V S + + +V S+ Q+T +++
Sbjct: 433 SSSQVISSSEVVSSSSEVSSSSEV-VSSSSEVSSSSEVSSSSEVSSSSQVTSSSEIVSSS 491
Query: 354 PFVLAFRSNKDISSFLDERDKSATAAKKSEKPTPIEIGG--EVS---QMEAGSSIPKVQD 408
V + S++ +SS + S + SE + E+ EVS Q+ + S I
Sbjct: 492 SEVSS-SSSEVVSSSSEVSSSSEVVSSSSEVSSSSEVSSSSEVSSSSQVISSSEIVSSSS 550
Query: 409 QPTSSDDGMASVPSAVGETVE-----DHEAPSKEKGELADIANRND--DPQNVMSGSSET 461
+ +SS + S S V + E + S E +++++ + V+S SSE
Sbjct: 551 EVSSSSSEVVSSSSEVSSSSEVVSSSSEVSSSSEVSSSSEVSSSSQVISSSEVVSSSSEV 610
Query: 462 LDGA--LQTIEKETEETTLNQTIEETPSTDVSGELAEQALSTDGPKAGEFTESQTEDTIA 519
+ + + + + + + ++ + E + S++VS + S + E + S +E +
Sbjct: 611 VSSSSEVSSSSEVSSSSEVSSSSEVSSSSEVSSSSQVTSSSEIVSSSSEVSSSSSEVVSS 670
Query: 520 KDEVQILTPAXXXXXXXXXXXALAPEGSVSTEKQIIGEAASTNLSGEIAEQVS-VSDSPK 578
EV + ++ VS+ Q+I + + S E+ S VS S +
Sbjct: 671 SSEVSSSSEVVSSSSEVSSSSEVSSSSEVSSSSQVISSSEVVSSSSEVVSSSSEVSSSSE 730
Query: 579 DEEVVQNQTDDVIAKDEE---QIQTPTTESEIPSAGSLKEKESGPIPDKNGSITSSGEEP 635
+ + ++ E + ++ SEI S+ S E S + TSS E
Sbjct: 731 VSSSSEVSSSSEVSSSSEVSSSSEVTSSSSEIISSSSSSEVTSSSEVSSSSQATSSSSEI 790
Query: 636 DVSSSQK 642
+SSS K
Sbjct: 791 -ISSSSK 796
Score = 146 (56.5 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 78/469 (16%), Positives = 178/469 (37%)
Query: 181 SDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRT 240
S + V IVS EV E + + +S + S++ + ++S +
Sbjct: 236 SSSQVTSSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEVVSSSSEVSSSSEVSSSSEV--- 292
Query: 241 TRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGF 300
S+S+ + +++ + ++ + + S + +S E + +S E
Sbjct: 293 --SSSSEVSSSSEVSSSSQVISSSEVVSSSSEVVSSSSEVS--SSSE--VSSSSEVVSSS 346
Query: 301 ANMMGGSSLQVGQEVSVRVLRISRGQVTLTMKKEDDVGSNLQLTQGVIHAATNPFVLAFR 360
+ + S + EVS S ++ + + S + + + +++ V++
Sbjct: 347 SEVSSSSEVSSSSEVSSSSQVTSSSEIVSSSSEVSSSSSEVVSSSSEVSSSSE--VVS-- 402
Query: 361 SNKDISSFLDERDKSATAAKKSEKPTPIEIGGEVSQMEAGSSIPKVQDQPTSSDDGMASV 420
S+ ++SS E S+ + SE + E+ SQ+ + S + + +SS + ++S
Sbjct: 403 SSSEVSSS-SEVSSSSEVSSSSEVSSSSEVSSS-SQVISSSEVVSSSSEVSSSSEVVSSS 460
Query: 421 PSAVGETVEDHEAPSKEKGELADIANRNDDPQNVMSGSSETLDGALQTIEKETEETTLNQ 480
+ + ++ + V S SSE + + + + +E + +
Sbjct: 461 SEVSSSSEVSSSSEVSSSSQVTSSSEIVSSSSEVSSSSSEVVSSSSE-VSSSSEVVSSSS 519
Query: 481 TIEETPSTDVSGELAE--QALSTDG--PKAGEFTESQTEDTIAKDEVQILTPAXXXXXXX 536
+ + S E++ Q +S+ + E + S +E + EV +
Sbjct: 520 EVSSSSEVSSSSEVSSSSQVISSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEVVSSSSEV 579
Query: 537 XXXXALAPEGSVSTEKQIIGEAASTNLSGEI---AEQVSVSDSPKDEEVVQNQTDDVIAK 593
++ VS+ Q+I + + S E+ + +VS S V + ++ +
Sbjct: 580 SSSSEVSSSSEVSSSSQVISSSEVVSSSSEVVSSSSEVSSSSEVSSSSEVSSSSEVSSSS 639
Query: 594 DEEQIQTPTTESEIPSAGSLKEKESGPIPDKNGSITSSGEEPDVSSSQK 642
+ T+ SEI S+ S S + + ++SS E VSSS +
Sbjct: 640 EVSSSSQVTSSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEV--VSSSSE 686
Score = 129 (50.5 bits), Expect = 0.00025, P = 0.00025
Identities = 79/469 (16%), Positives = 183/469 (39%)
Query: 190 SIVSVGQEVKVRL-IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRR--STS 246
S VS EV + +++E S + S+ +S + ++S + V ++ S+S
Sbjct: 411 SEVSSSSEVSSSSEVSSSSEVSSSSQVISSSEVVSS---SSEVSSSSEVVSSSSEVSSSS 467
Query: 247 KPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGG 306
+ + +++ ++ + ++ S + + E + +S E + +
Sbjct: 468 EVSSSSEVSSSSQVTSSSEIVSSSSEVSSSSSEVVSSSSE---VSSSSEVVSSSSEVSSS 524
Query: 307 SSLQVGQEVSVRVLRISRGQVT-----LTMKKEDDVGSNLQLTQG--VIHAATNPFVLA- 358
S + EVS IS ++ ++ + V S+ +++ V+ +++ +
Sbjct: 525 SEVSSSSEVSSSSQVISSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEVVSSSSEVSSSSE 584
Query: 359 FRSNKDISSFLDERDKSATAAKKSEKPTPIEIGGEVSQMEAGSSIPKVQDQPTSSDDGMA 418
S+ ++SS S + SE + S++ + S + + +SS+ +
Sbjct: 585 VSSSSEVSSSSQVISSSEVVSSSSEVVSSSSEVSSSSEVSSSSEVSSSSEVSSSSEVSSS 644
Query: 419 SVPSAVGETVEDHEAPSKEKGELADIANRNDDPQNVMSGSSETLDGALQTIEKETEETTL 478
S ++ E V S E+ ++ V+S SSE + + +E ++
Sbjct: 645 SQVTSSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEVVSSSSEVSSSS--EVSSSSEVSSS 702
Query: 479 NQTIEETPSTDVSGELAEQA--LSTDGPKAGEFTESQTEDTIAKDEVQILTPAXXXXXXX 536
+Q I + S E+ + +S+ + S + + + EV + +
Sbjct: 703 SQVISSSEVVSSSSEVVSSSSEVSSSSEVSSSSEVSSSSEVSSSSEV---SSSSEVTSSS 759
Query: 537 XXXXALAPEGSVSTEKQIIGEAASTNLSGEIAEQVS-VSDSPK---DEEVVQNQTDDVIA 592
+ + V++ ++ + +T+ S EI S VS S + E + + T +V +
Sbjct: 760 SEIISSSSSSEVTSSSEVSSSSQATSSSSEIISSSSKVSSSSEITSSSECISS-TSEVNS 818
Query: 593 KDEEQIQTPTTESEIPSAGSLKEKESGPIPDKNGSITSSGEEPDVSSSQ 641
E + + + SE+ S+ + S + +TSS E SSS+
Sbjct: 819 SSSEVVSSSSASSEVVSSSTECISSSSEAISSSSQVTSSSTECISSSSE 867
>UNIPROTKB|F1S843 [details] [associations]
symbol:LOC100157027 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 PROSITE:PS50293 SMART:SM00386 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
OMA:LHLADIY GeneTree:ENSGT00390000012228 Ensembl:ENSSSCT00000011593
ArrayExpress:F1S843 Uniprot:F1S843
Length = 1876
Score = 125 (49.1 bits), Expect = 1.9e-06, Sum P(4) = 1.9e-06
Identities = 29/86 (33%), Positives = 49/86 (56%)
Query: 140 VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
++ D+ PGA GKV +I+P+G ++ G GLV L+D +K+ VG EVK
Sbjct: 445 LRYHDIKPGALVKGKVLTIKPYGMLVNMGREIRGLVPPMHLADILMKNPEKKYHVGDEVK 504
Query: 200 VRLIEANAETGRISLTMRESDDISKL 225
R++ + E R+ +T++++ SKL
Sbjct: 505 CRVLLCDPEAKRLMMTLKKTLVESKL 530
Score = 109 (43.4 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 27/82 (32%), Positives = 40/82 (48%)
Query: 139 PVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEV 198
P ++ PG G VRSI+ +G FI F + GL + +SD FV GQ V
Sbjct: 718 PKSFSEIHPGMLLIGFVRSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTV 777
Query: 199 KVRLIEANAETGRISLTMRESD 220
++ + E R+ L++R SD
Sbjct: 778 VAKVTNVDEEKQRMLLSLRLSD 799
Score = 83 (34.3 bits), Expect = 2.5e-06, Sum P(3) = 2.5e-06
Identities = 62/314 (19%), Positives = 127/314 (40%)
Query: 213 SLTMRESDDISKLQQQKDATASGDKVRTTRRST-SKPGQKRD----EMKTTKFVK-GQDL 266
S T E+ ++ K+++ + +G + + RS+ + P K E+ +T+ ++ GQ L
Sbjct: 1267 SETPLETFNLKKIERCYVLSNAGPVLTLSLRSSRTNPDTKSKIVDPEINSTQDIEEGQLL 1326
Query: 267 EGTVKNLTRSGAFISLPEGEEGFLPTSEESDDG-FANMMGGSSLQVGQEVSVRVLRISRG 325
G VK++ SG + L G S S N + L G+ ++ +VL ++R
Sbjct: 1327 RGYVKSIQPSGVLLGLGPSVTGLARYSHVSQHSPTRNALYDKYLPEGKLLTAKVLSLNRR 1386
Query: 326 QVTLTMK-KEDDVGSNLQLTQGVIHAATNPFVLAFRSNKDISSFLDERDKSATAAKKSEK 384
+ + + D G V A+ L + + + + T +K +K
Sbjct: 1387 ENLVELSFLPGDTGK-----PDVFSASPRLPHLKQEGRDTEAEEREHKGEGETEERKRQK 1441
Query: 385 PTPIEIGGEVSQMEAGSSIPKVQDQPTSSDDGMASVPSAVGETVEDHEAPSKEKGELADI 444
G E + S K +P + G P E+ + E+ +K++ + A +
Sbjct: 1442 RKEKSSGKEQEEAPLPSRETKEPQRPRAKKPGKRPHP----ESASEQESVNKKQKKAA-L 1496
Query: 445 ANRNDDPQNVM--SGSSETLDGALQTIEKETEETTLNQTIEETPSTDVSGELAEQALSTD 502
+ D V G E + ++ EK+T L + S+ + ++ +L+
Sbjct: 1497 SEEEDSGVEVYYREGEEEVEETGMRPKEKQTR---LAEAPRLQLSSGFTWDVGLDSLTPA 1553
Query: 503 GPKAGEFTESQTED 516
P GE ++S+ ++
Sbjct: 1554 LPPHGESSDSEEDE 1567
Score = 62 (26.9 bits), Expect = 1.9e-06, Sum P(4) = 1.9e-06
Identities = 21/86 (24%), Positives = 38/86 (44%)
Query: 252 RDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQV 311
+D ++ G L G V+++ G FI P G G P + SD F ++
Sbjct: 716 QDPKSFSEIHPGMLLIGFVRSIKDYGVFIQFPSGLSGLAPKAIMSDK-FVTSTSDHFVE- 773
Query: 312 GQEVSVRVLRIS--RGQVTLTMKKED 335
GQ V +V + + ++ L+++ D
Sbjct: 774 GQTVVAKVTNVDEEKQRMLLSLRLSD 799
Score = 57 (25.1 bits), Expect = 6.2e-06, Sum P(3) = 6.2e-06
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 370 DERDKSATAAKKSEKPTPIE---IGGEVSQMEAGSSIPKVQDQPTSSDD 415
DE+ + AT KKS+K +E E+S++E P QP S+DD
Sbjct: 1566 DEKPEQATQKKKSKKERELEKQKAEKELSRLEEALMDPG--RQPESADD 1612
Score = 55 (24.4 bits), Expect = 1.9e-06, Sum P(4) = 1.9e-06
Identities = 17/77 (22%), Positives = 33/77 (42%)
Query: 566 EIAEQVSVSDSPKDEEVVQNQTDDVIAKDEEQIQTPTTESEIPSAGSLKEKESGPIPDKN 625
E E+ + +E Q + + K++E+ P+ E++ P K+ P P+
Sbjct: 1422 EAEEREHKGEGETEERKRQKRKEKSSGKEQEEAPLPSRETKEPQRPRAKKPGKRPHPE-- 1479
Query: 626 GSITSSGEEPDVSSSQK 642
S+ E+ V+ QK
Sbjct: 1480 ----SASEQESVNKKQK 1492
Score = 50 (22.7 bits), Expect = 1.9e-06, Sum P(4) = 1.9e-06
Identities = 16/62 (25%), Positives = 28/62 (45%)
Query: 468 TIEKETEETTLNQTIEETPSTDVSGELAEQALSTDGPKAGEFTESQTEDTIAKDEVQILT 527
T ++E+ + Q + T ST G + L+ +GP A +D+ DE + +
Sbjct: 960 TFRFDSEKLQVGQGVSLTLSTTEPG-VTGLLLAVEGPAAKRTMRQTRKDSETVDEDEEVD 1018
Query: 528 PA 529
PA
Sbjct: 1019 PA 1020
Score = 40 (19.1 bits), Expect = 2.5e-06, Sum P(3) = 2.5e-06
Identities = 9/51 (17%), Positives = 24/51 (47%)
Query: 556 GEAASTNLSGEIAEQVSVSDSPKDEEVVQNQTDDVIAKDEEQIQTPTTESE 606
GE++ + + + S K+ E+ + + + +++ EE + P + E
Sbjct: 1558 GESSDSEEDEKPEQATQKKKSKKERELEKQKAEKELSRLEEALMDPGRQPE 1608
>TIGR_CMR|GSU_2603 [details] [associations]
symbol:GSU_2603 "ribosomal protein S1" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR000110
InterPro:IPR003029 Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681
PROSITE:PS50126 GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HOGENOM:HOG000044052 KO:K02945
ProtClustDB:PRK06299 TIGRFAMs:TIGR00717 RefSeq:NP_953648.2
GeneID:2686316 KEGG:gsu:GSU2603 PATRIC:22028059
BioCyc:GSUL243231:GH27-2582-MONOMER Uniprot:Q749Y9
Length = 586
Score = 119 (46.9 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 138 PPVKNEDLIP-GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS-DNFVKDVGSIVSVG 195
P + E+ P G G+++SI FG FI DGLVHVS +S +K G + + G
Sbjct: 378 PWTQLEEKYPVGTKLEGQIKSITDFGVFIGVDEGIDGLVHVSDISWTKRIKHPGEVYAKG 437
Query: 196 QEVKVRLIEANAETGRISLTMRE 218
Q V+ ++ +AE R+SL +++
Sbjct: 438 QTVQAVVLNVDAENERLSLGIKQ 460
Score = 118 (46.6 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 34/113 (30%), Positives = 61/113 (53%)
Query: 130 RTARKSEMPPVKNE---DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVK 186
R + E V+ E +L G T G V++I +GAF+D G DGL+HV+ +S +
Sbjct: 196 RVLLEEERAGVRTETLANLAEGQTREGVVKNITDYGAFVDIGG-VDGLLHVTDMSWGRLG 254
Query: 187 DVGSIVSVGQEVKVRLIEANAETGRISLTMRE-SDDISKLQQQKDATASGDKV 238
++ G ++ V++++ + E G+ISL +++ + D +QK GD+V
Sbjct: 255 HPSEMLKPGDKLSVKILKYDQEKGKISLGLKQITPDPWLAVEQKFQV--GDRV 305
Score = 95 (38.5 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 22/73 (30%), Positives = 42/73 (57%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS-DNFVKDVGSIVSVGQEVKVRLIEAN 206
G +G+V S+ +GAF+ +GLVHVS +S ++ +++VG EV+ ++ +
Sbjct: 302 GDRVSGRVVSMTDYGAFVALDEGVEGLVHVSEMSWTKRLRHPSDLLTVGDEVETVVLGID 361
Query: 207 AETGRISLTMRES 219
RISL ++++
Sbjct: 362 TGNRRISLGLKQA 374
Score = 72 (30.4 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G + G V ++T G F+ + EG EG + SE S + A+ +S VG E+ VL +
Sbjct: 476 GTRVRGKVTSVTDFGVFLEIEEGIEGLVHVSELSREKVASPKDFAS--VGDELDAVVLSV 533
Query: 323 S--RGQVTLTMK 332
++ L++K
Sbjct: 534 DDVEKKIALSVK 545
>TIGR_CMR|GSU_1200 [details] [associations]
symbol:GSU_1200 "ribosomal protein S1" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 KO:K02945 HOGENOM:HOG000044053
RefSeq:NP_952253.1 ProteinModelPortal:Q74DW5 GeneID:2685786
KEGG:gsu:GSU1200 PATRIC:22025170 OMA:NEMRFTT ProtClustDB:PRK06676
BioCyc:GSUL243231:GH27-1176-MONOMER Uniprot:Q74DW5
Length = 402
Score = 141 (54.7 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 28/76 (36%), Positives = 47/76 (61%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+ L G T TG V + PFGAF+D G +GL+ +S + VK++G ++SVG++V +
Sbjct: 199 DTLKEGTTLTGTVTRLMPFGAFVDIGG-VEGLIPISEAGWSRVKEIGDVLSVGEQVTALV 257
Query: 203 IEANAETGRISLTMRE 218
+ E +ISL++R+
Sbjct: 258 KRIDWENNKISLSLRD 273
Score = 102 (41.0 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 34/109 (31%), Positives = 56/109 (51%)
Query: 250 QKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMG-GSS 308
QKR+ +K T +G L GTV L GAF+ + G EG +P SE G++ + G
Sbjct: 192 QKREALKDT-LKEGTTLTGTVTRLMPFGAFVDIG-GVEGLIPISEA---GWSRVKEIGDV 246
Query: 309 LQVGQEVSVRVLRIS--RGQVTLTMKK-EDDVGSNL--QLTQGVIHAAT 352
L VG++V+ V RI +++L+++ + D + + +G H T
Sbjct: 247 LSVGEQVTALVKRIDWENNKISLSLRDVQADPWEGIAERFPEGSYHTGT 295
Score = 63 (27.2 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 26/109 (23%), Positives = 43/109 (39%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
+ E L PG+ +V I F+D G+ +G++ L D KD V+ G + V
Sbjct: 27 RTERLRPGSKVDARVLKIGAEWVFLDIGSKGEGVMERKELLD---KDGNLTVAEGDTIPV 83
Query: 201 RLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPG 249
++ E + T + + L +DA +G V K G
Sbjct: 84 WFVKV--ERNEMRFTTKVGTGQAGLSALEDAYRAGIPVEGNVEKEIKGG 130
>WB|WBGene00003393 [details] [associations]
symbol:mog-5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0002009 "morphogenesis
of an epithelium" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0042127
"regulation of cell proliferation" evidence=IMP] [GO:0040020
"regulation of meiosis" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0048589 "developmental growth" evidence=IMP]
[GO:0010172 "embryonic body morphogenesis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR003029
InterPro:IPR007502 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00575 Pfam:PF04408 PROSITE:PS00690 PROSITE:PS50126
PROSITE:PS51194 SMART:SM00490 SMART:SM00847 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0002009 GO:GO:0006915
GO:GO:0002119 GO:GO:0008380 GO:GO:0018996 GO:GO:0006397
GO:GO:0040011 GO:GO:0003723 GO:GO:0042127 GO:GO:0007281
GO:GO:0048589 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0010172 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG1643 InterPro:IPR011709 Pfam:PF07717
GO:GO:0040022 GO:GO:0008026 EMBL:FO081042 HOGENOM:HOG000175261
InterPro:IPR022967 SMART:SM00316 GeneTree:ENSGT00700000104241
KO:K12818 OMA:NAWCYEN EMBL:AF286899 PIR:T15921 RefSeq:NP_495019.1
UniGene:Cel.7556 ProteinModelPortal:Q09530 SMR:Q09530
DIP:DIP-25759N IntAct:Q09530 MINT:MINT-1046882 STRING:Q09530
PaxDb:Q09530 EnsemblMetazoa:EEED8.5 GeneID:173920
KEGG:cel:CELE_EEED8.5 UCSC:EEED8.5 CTD:173920 WormBase:EEED8.5
InParanoid:Q09530 NextBio:881669 Uniprot:Q09530
Length = 1200
Score = 158 (60.7 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 44/130 (33%), Positives = 71/130 (54%)
Query: 125 ESRRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFT---DGLVHVSRLS 181
+ +R R R+ + K+E G + G+V SIQ FGAFI F +GLVH+S++
Sbjct: 211 DRQRDRRDRRDDGGARKSEVAEIGKIYDGRVNSIQSFGAFITLEGFRQKQEGLVHISQIR 270
Query: 182 DNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESD-----DISKLQQQKDATASGD 236
+ V+ V ++ G+ VKV++ + E G+ISL+M+E D D++ + + A G
Sbjct: 271 NERVQTVADVLKRGENVKVKVNKI--ENGKISLSMKEVDQNSGEDLNPRETDLNPDAIGV 328
Query: 237 KVRTTRRSTS 246
+ RT STS
Sbjct: 329 RPRTPPASTS 338
Score = 37 (18.1 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 7/48 (14%), Positives = 22/48 (45%)
Query: 547 SVSTEKQIIGEAASTNLSGEIAEQVSVSDSPKDEEVVQNQTDDVIAKD 594
++S K++ E L ++ + D + +++ TD ++ ++
Sbjct: 598 AMSVAKRV-AEEYGCKLGTDVGYTIRFEDCTSQDTIIKYMTDGMLLRE 644
>UNIPROTKB|Q09530 [details] [associations]
symbol:mog-5 "Probable pre-mRNA-splicing factor
ATP-dependent RNA helicase mog-5" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR003029
InterPro:IPR007502 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00575 Pfam:PF04408 PROSITE:PS00690 PROSITE:PS50126
PROSITE:PS51194 SMART:SM00490 SMART:SM00847 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0002009 GO:GO:0006915
GO:GO:0002119 GO:GO:0008380 GO:GO:0018996 GO:GO:0006397
GO:GO:0040011 GO:GO:0003723 GO:GO:0042127 GO:GO:0007281
GO:GO:0048589 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0010172 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG1643 InterPro:IPR011709 Pfam:PF07717
GO:GO:0040022 GO:GO:0008026 EMBL:FO081042 HOGENOM:HOG000175261
InterPro:IPR022967 SMART:SM00316 GeneTree:ENSGT00700000104241
KO:K12818 OMA:NAWCYEN EMBL:AF286899 PIR:T15921 RefSeq:NP_495019.1
UniGene:Cel.7556 ProteinModelPortal:Q09530 SMR:Q09530
DIP:DIP-25759N IntAct:Q09530 MINT:MINT-1046882 STRING:Q09530
PaxDb:Q09530 EnsemblMetazoa:EEED8.5 GeneID:173920
KEGG:cel:CELE_EEED8.5 UCSC:EEED8.5 CTD:173920 WormBase:EEED8.5
InParanoid:Q09530 NextBio:881669 Uniprot:Q09530
Length = 1200
Score = 158 (60.7 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 44/130 (33%), Positives = 71/130 (54%)
Query: 125 ESRRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFT---DGLVHVSRLS 181
+ +R R R+ + K+E G + G+V SIQ FGAFI F +GLVH+S++
Sbjct: 211 DRQRDRRDRRDDGGARKSEVAEIGKIYDGRVNSIQSFGAFITLEGFRQKQEGLVHISQIR 270
Query: 182 DNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESD-----DISKLQQQKDATASGD 236
+ V+ V ++ G+ VKV++ + E G+ISL+M+E D D++ + + A G
Sbjct: 271 NERVQTVADVLKRGENVKVKVNKI--ENGKISLSMKEVDQNSGEDLNPRETDLNPDAIGV 328
Query: 237 KVRTTRRSTS 246
+ RT STS
Sbjct: 329 RPRTPPASTS 338
Score = 37 (18.1 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 7/48 (14%), Positives = 22/48 (45%)
Query: 547 SVSTEKQIIGEAASTNLSGEIAEQVSVSDSPKDEEVVQNQTDDVIAKD 594
++S K++ E L ++ + D + +++ TD ++ ++
Sbjct: 598 AMSVAKRV-AEEYGCKLGTDVGYTIRFEDCTSQDTIIKYMTDGMLLRE 644
>TIGR_CMR|SPO_0802 [details] [associations]
symbol:SPO_0802 "ribosomal protein S1" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HOGENOM:HOG000044052 KO:K02945
ProtClustDB:PRK06299 TIGRFAMs:TIGR00717 OMA:SRRYPQG
RefSeq:YP_166055.1 ProteinModelPortal:Q5LVA0 SMR:Q5LVA0
GeneID:3195039 KEGG:sil:SPO0802 PATRIC:23374881 Uniprot:Q5LVA0
Length = 558
Score = 145 (56.1 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 34/90 (37%), Positives = 57/90 (63%)
Query: 129 SRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDV 188
SR +++E+ + N L G T G V++I +GAF+D G DGL+HV+ ++ V
Sbjct: 181 SRAEQRAEV--IGN--LTEGQTVDGVVKNITEYGAFVDLGG-VDGLLHVTDMAWRRVNHP 235
Query: 189 GSIVSVGQEVKVRLIEANAETGRISLTMRE 218
I+++G+ VKV++I+ N +T RISL M++
Sbjct: 236 NEILNIGETVKVQVIKINKDTHRISLGMKQ 265
Score = 123 (48.4 bits), Expect = 0.00035, P = 0.00035
Identities = 51/189 (26%), Positives = 86/189 (45%)
Query: 152 TGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDV--GSIVSVGQEVKVRLIEANAET 209
TG+V +I +GAF++ +GLVHVS +S K+V G IVS QEV+V ++E +
Sbjct: 285 TGRVTNITDYGAFVELEPGVEGLVHVSEMSWT-KKNVHPGKIVSTSQEVEVMVLEIDGAK 343
Query: 210 GRISL----TMRESDDISKLQQQKDATASGDKVRTTRRST--SKPGQKRDEMKTTKFVKG 263
R+SL TMR ++ + G+ T PG + +
Sbjct: 344 RRVSLGLKQTMRNPWEVFAETHPEGTVVEGEVKNITEFGLFIGLPGDIDGMVHLSDLSWD 403
Query: 264 QDLEGTVKNLTRSG---AFISLPEGEEGFLPTSEES--DDGFANMMGGSSLQVGQEVSVR 318
+ E ++N + A +S + ++ + S +S D FA +GG ++ G ++V
Sbjct: 404 ERGEDAIQNYRKGDMVKAVVSEVDIDKERISLSIKSVGGDKFAEAVGG--VKRGSIITVN 461
Query: 319 VLRISRGQV 327
V I G +
Sbjct: 462 VTAIEDGGI 470
Score = 41 (19.5 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 18/74 (24%), Positives = 33/74 (44%)
Query: 509 FTESQTEDTIAKDEVQILTPAXXXXXXXXXXXALAPEGSVSTEKQIIGEAASTNL-SGEI 567
F E+ E T+ + EV+ +T + +S +++ GE A N G++
Sbjct: 361 FAETHPEGTVVEGEVKNITEFGLFIGLPGDIDGMVHLSDLSWDER--GEDAIQNYRKGDM 418
Query: 568 AEQVSVSDSPKDEE 581
+ V VS+ D+E
Sbjct: 419 VKAV-VSEVDIDKE 431
>FB|FBgn0086895 [details] [associations]
symbol:pea "peanuts" species:7227 "Drosophila melanogaster"
[GO:0007286 "spermatid development" evidence=IMP] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IC] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR003029
InterPro:IPR007502 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00575 Pfam:PF04408 PROSITE:PS00690 PROSITE:PS50126
PROSITE:PS51194 SMART:SM00490 SMART:SM00847 EMBL:AE013599
GO:GO:0005524 GO:GO:0022008 GO:GO:0007286 GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG1643 InterPro:IPR011709 Pfam:PF07717
GO:GO:0004004 GO:GO:0000381 InterPro:IPR022967 SMART:SM00316
GeneTree:ENSGT00700000104241 KO:K12818 OMA:NAWCYEN EMBL:BT044222
RefSeq:NP_610928.1 UniGene:Dm.12451 SMR:A1Z9L3 STRING:A1Z9L3
EnsemblMetazoa:FBtr0087518 GeneID:36561 KEGG:dme:Dmel_CG8241
UCSC:CG8241-RA CTD:36561 FlyBase:FBgn0086895 InParanoid:A1Z9L3
OrthoDB:EOG437PVS GenomeRNAi:36561 NextBio:799212 Uniprot:A1Z9L3
Length = 1242
Score = 149 (57.5 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 52/171 (30%), Positives = 80/171 (46%)
Query: 122 TLAESRRSRTARKSE-MPP---VKNEDLIPGATFTGKVRSIQPFGAFID-FGAFT--DGL 174
T RR R+ SE MPP +D G ++GK+ +I PFG F+ FG +GL
Sbjct: 255 TERRDRRDRSRDCSEKMPPPSAAMTDDPEAGKIYSGKIANIVPFGCFVQLFGLRKRWEGL 314
Query: 175 VHVSRL-SDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATA 233
VH+S+L ++ V DV +V+ Q VKV+++ + ++SL+M+E D S + A
Sbjct: 315 VHISQLRAEGRVTDVTEVVTRNQTVKVKVMSITGQ--KVSLSMKEVDQDSGKDLNPLSHA 372
Query: 234 SGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPE 284
D R+ P M ++G +EG + IS PE
Sbjct: 373 PEDDESLRDRNPDGPFSSSTSMLN---LQGNGMEGDEHESRKRVTRISSPE 420
Score = 45 (20.9 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 32/203 (15%), Positives = 73/203 (35%)
Query: 393 EVSQMEAGSSIPKVQDQPTSSDDGMASVPSAVGETVEDHEAPSKEKGELA-DIANRNDDP 451
+ + M++ S + + + + + ++P+++ + D P E LA ++ P
Sbjct: 495 QAAMMQSALSKERREQKMLQREQEIEAMPTSLNKNWID-PLPEDESRSLAANMRGMAAAP 553
Query: 452 QNVMSGSSETLDGALQTIEKETEETTLNQTIEETPSTDVSGELAEQALSTDGPKAGEFTE 511
V + G + K+T+ T + Q + P + +L + TD E
Sbjct: 554 PEVPEWKKHVIGGKKSSFGKKTDLTLVEQR-QSLPIYKLRDDLIKAV--TDNQILIVIGE 610
Query: 512 SQTEDTIAKDEVQILTPAXXXXXXXXXXXALAPEGSVSTEKQIIGEAASTNLSGEIAEQV 571
+ + T Q L ++S K++ E L E+ +
Sbjct: 611 TGSGKTT--QITQYLGECGFTARGKIGCTQPRRVAAMSVAKRV-AEEYGCRLGQEVGYTI 667
Query: 572 SVSDSPKDEEVVQNQTDDVIAKD 594
D E +++ TD ++ ++
Sbjct: 668 RFEDCTSPETIIKYMTDGMLLRE 690
>SGD|S000000815 [details] [associations]
symbol:PRP22 "DEAH-box RNA-dependent ATPase/ATP-dependent RNA
helicase" species:4932 "Saccharomyces cerevisiae" [GO:0071007
"U2-type catalytic step 2 spliceosome" evidence=IMP] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000350 "generation of catalytic spliceosome for second
transesterification step" evidence=IDA;IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000386 "second spliceosomal transesterification
activity" evidence=IMP;IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000390 "spliceosomal complex disassembly"
evidence=IMP] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0071021 "U2-type post-spliceosomal complex"
evidence=IMP] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR003029 InterPro:IPR007502 Pfam:PF00271 Pfam:PF00575
Pfam:PF04408 PROSITE:PS00690 PROSITE:PS50126 PROSITE:PS51194
SMART:SM00490 SMART:SM00847 SGD:S000000815 GO:GO:0005524 KO:K01897
GO:GO:0003723 EMBL:BK006939 EMBL:U18778 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG1643 InterPro:IPR011709 Pfam:PF07717
GO:GO:0004004 HOGENOM:HOG000175261 GO:GO:0071007 InterPro:IPR022967
SMART:SM00316 GO:GO:0000390 GeneTree:ENSGT00700000104241 KO:K12818
GO:GO:0000350 RefSeq:NP_010931.3 GeneID:856734 KEGG:sce:YER015W
OrthoDB:EOG45TGW9 EMBL:X58681 PIR:S13643 RefSeq:NP_010929.3
ProteinModelPortal:P24384 SMR:P24384 DIP:DIP-655N IntAct:P24384
MINT:MINT-648209 STRING:P24384 PaxDb:P24384 EnsemblFungi:YER013W
GeneID:856732 KEGG:sce:YER013W CYGD:YER013w OMA:QITQYLD
NextBio:982846 Genevestigator:P24384 GermOnline:YER013W
GO:GO:0071021 Uniprot:P24384
Length = 1145
Score = 144 (55.7 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 55/214 (25%), Positives = 105/214 (49%)
Query: 134 KSEMPPVKNEDLIP--GATFTGKVRSIQPFGAFID-FGAFT---DGLVHVSRLSDNFVKD 187
+ E+ +++ D P + GKVR+I FG F+ FG DGLVH+S +SD D
Sbjct: 162 EEEVQKIESLDPSPVLHKVYEGKVRNITTFGCFVQIFGTRMKNCDGLVHISEMSDQRTLD 221
Query: 188 VGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSK 247
+V GQ + V +I+ G+ISL+M+ D S ++++ + D+ R+ TS+
Sbjct: 222 PHDVVRQGQHIFVEVIKIQ-NNGKISLSMKNIDQHSGEIRKRNTESVEDRGRSNDAHTSR 280
Query: 248 PGQKRDEMKTTKFVKGQDLEGTVKNLTRSGA--FISLPEGEEGF-LPTS---EESDDGFA 301
++++K + E ++ L SGA PE ++ + TS + DDG
Sbjct: 281 --NMKNKIKRRALTSPERWE--IRQLIASGAASIDDYPELKDEIPINTSYLTAKRDDG-- 334
Query: 302 NMMGGSSLQVGQEVSVRVLRISRGQVTLTMKKED 335
+++ G++ +V ++ + R ++ + + +D
Sbjct: 335 SIVNGNTEKVDSKLEEQQ-RDETDEIDVELNTDD 367
>UNIPROTKB|Q3IJ73 [details] [associations]
symbol:pnp "Polyribonucleotide nucleotidyltransferase"
species:326442 "Pseudoalteromonas haloplanktis TAC125" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR009019
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 SUPFAM:SSF54814 HSSP:Q9UXC2 Pfam:PF03725
SUPFAM:SSF55666 eggNOG:COG1185 HOGENOM:HOG000218327 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS ProtClustDB:PRK11824 EMBL:CR954246
RefSeq:YP_339522.1 ProteinModelPortal:Q3IJ73 SMR:Q3IJ73
STRING:Q3IJ73 GeneID:3709905 GenomeReviews:CR954246_GR
KEGG:pha:PSHAa1001 PATRIC:32295529
BioCyc:PHAL326442:GJIU-1008-MONOMER Uniprot:Q3IJ73
Length = 708
Score = 141 (54.7 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 31/76 (40%), Positives = 50/76 (65%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
+L G + GKV I FGAF++ DGLVH+S++S V +V +S GQEVKV+++
Sbjct: 620 ELEVGTIYEGKVVRIVDFGAFVNILPGKDGLVHISQISTERVNNVTDHLSEGQEVKVKVL 679
Query: 204 EANAETGRISLTMRES 219
E + + GR+ L+++E+
Sbjct: 680 EVDRQ-GRVRLSIKEA 694
>ASPGD|ASPL0000042752 [details] [associations]
symbol:rrp5 species:162425 "Emericella nidulans"
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
SMART:SM00386 GO:GO:0005634 EMBL:BN001307 GO:GO:0006397
GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
EMBL:AACD01000034 eggNOG:COG0539 KO:K14792 HOGENOM:HOG000167551
OrthoDB:EOG4N07P1 OMA:FYGNVRG RefSeq:XP_659751.1
ProteinModelPortal:Q5BBD3 STRING:Q5BBD3
EnsemblFungi:CADANIAT00008825 GeneID:2875769 KEGG:ani:AN2147.2
Uniprot:Q5BBD3
Length = 1780
Score = 141 (54.7 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 38/136 (27%), Positives = 69/136 (50%)
Query: 139 PVKNEDLIPGATFTGKVRSIQPFGAFI--DFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQ 196
P+ DL PG TGKVR ++ FGAFI D + GL H + ++D V+D ++ G
Sbjct: 1307 PITLYDLKPGQIVTGKVRKVEQFGAFIVIDGSSNVSGLCHRTEMADTRVEDARTLYEEGD 1366
Query: 197 EVKVRLIEANAETGRISLTMRES---DDIS-KLQQQKDATASGDKVRTTRR-STSKPGQK 251
VK ++++ + + G+IS ++ S DD + +D+ + G + + + G+
Sbjct: 1367 AVKAKVLKVDRDQGKISFGLKASYFNDDAEDESSGNEDSDSDGVSLDSFGGVELEESGES 1426
Query: 252 RDEMKTTKFVKGQDLE 267
++ + + G DLE
Sbjct: 1427 DEDDDSDVSMGGMDLE 1442
Score = 119 (46.9 bits), Expect = 5.6e-06, Sum P(3) = 5.6e-06
Identities = 24/75 (32%), Positives = 42/75 (56%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
D++PGA G + +I P GA + F G + VS +S+ ++KD +GQ V V +
Sbjct: 636 DILPGAQSPGTIINILPNGAVVQFYGNVRGWLSVSEMSEAYIKDPSQHFKLGQVVNVHAL 695
Query: 204 EANAETGRISLTMRE 218
+A G++S++ R+
Sbjct: 696 NVDASQGKLSVSCRD 710
Score = 74 (31.1 bits), Expect = 5.6e-06, Sum P(3) = 5.6e-06
Identities = 28/95 (29%), Positives = 43/95 (45%)
Query: 244 STSKPGQKRDEMKTTKFVKGQDL-EGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFAN 302
S+S P Q E+ + + VK D+ G V+ ++ G F+++ F+ S+ SD
Sbjct: 1208 SSSLPVQD-PEITSMEQVKVNDIIRGFVRQVSDGGLFVTVGHNIVAFIRISDLSDSYLKE 1266
Query: 303 MMGGSSLQVGQEVSVRVLRISRGQVTLTMKKEDDV 337
S QVGQ V RV + L M +D V
Sbjct: 1267 WK--DSFQVGQLVKGRVTLVDPENKKLQMSLKDSV 1299
Score = 51 (23.0 bits), Expect = 5.6e-06, Sum P(3) = 5.6e-06
Identities = 18/73 (24%), Positives = 26/73 (35%)
Query: 425 GETVEDHEAPSKEKGELADIA-----NRNDDPQNVMSGSSETLDGALQTIEKETEETTLN 479
G+ V D KG L + N DD M S+ D +Q K + L
Sbjct: 1456 GDAVVDEPTNKIRKGGLGAVGFDWNGNTQDDEDEAMQSDSDDEDKGIQKKRKHRQPEIL- 1514
Query: 480 QTIEETPSTDVSG 492
++ T D +G
Sbjct: 1515 --VDRTGELDANG 1525
>UNIPROTKB|O06147 [details] [associations]
symbol:rpsA "30S ribosomal protein S1" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] InterPro:IPR000110
InterPro:IPR003029 Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681
PROSITE:PS50126 GO:GO:0005829 GO:GO:0005886 GO:GO:0040007
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0006412 EMBL:BX842577 GO:GO:0003723
GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
KO:K02945 PIR:D70559 RefSeq:NP_216146.1 RefSeq:NP_336122.1
RefSeq:YP_006515019.1 ProteinModelPortal:O06147 SMR:O06147
PhosSite:P12061590 PRIDE:O06147 EnsemblBacteria:EBMYCT00000003837
EnsemblBacteria:EBMYCT00000072148 GeneID:13316409 GeneID:885188
GeneID:924199 KEGG:mtc:MT1666 KEGG:mtu:Rv1630 KEGG:mtv:RVBD_1630
PATRIC:18125426 TubercuList:Rv1630 HOGENOM:HOG000044053 OMA:WQQFART
ProtClustDB:PRK07899 Uniprot:O06147
Length = 481
Score = 137 (53.3 bits), Expect = 8.3e-06, P = 8.3e-06
Identities = 35/97 (36%), Positives = 54/97 (55%)
Query: 126 SRRSRTAR-KSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNF 184
SRR+ + +SE+ +L G G V SI FGAF+D G DGLVHVS LS
Sbjct: 186 SRRAWLEQTQSEVRSEFLNNLQKGTIRKGVVSSIVNFGAFVDLGG-VDGLVHVSELSWKH 244
Query: 185 VKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDD 221
+ +V VG EV V +++ + + R+SL+++ + +
Sbjct: 245 IDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQE 281
Score = 135 (52.6 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 26/74 (35%), Positives = 47/74 (63%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G GKV + PFGAF+ +GLVH+S L++ V+ +V+VG + V++I+ +
Sbjct: 294 GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDL 353
Query: 208 ETGRISLTMRESDD 221
E RISL+++++++
Sbjct: 354 ERRRISLSLKQANE 367
>TIGR_CMR|ECH_0402 [details] [associations]
symbol:ECH_0402 "putative ribosomal protein S1"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] [GO:0015935 "small ribosomal subunit"
evidence=ISS] InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299
RefSeq:YP_507222.1 ProteinModelPortal:Q2GH61 STRING:Q2GH61
GeneID:3927480 KEGG:ech:ECH_0402 PATRIC:20576281
BioCyc:ECHA205920:GJNR-403-MONOMER Uniprot:Q2GH61
Length = 567
Score = 109 (43.4 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 25/79 (31%), Positives = 45/79 (56%)
Query: 148 GATFTGKVRSIQPFGAFIDFG-----AFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
G GKV+SI +G FI+ DGL+H++ +S + V ++ S GQ VK ++
Sbjct: 231 GDIIEGKVKSITKYGVFIEIHESPSVGVVDGLLHITDISWSRVSHPSAVFSCGQTVKTKI 290
Query: 203 IEANAETGRISLTMRESDD 221
I+ + E +ISL +++ ++
Sbjct: 291 IKIDRENKKISLGVKQLEE 309
Score = 101 (40.6 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 29/103 (28%), Positives = 55/103 (53%)
Query: 125 ESRR-SRTARKSEMPPVKN-EDLIP-GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS 181
E+++ S ++ E P N E P + G V SI+ +G F++ +GLVHVS +S
Sbjct: 296 ENKKISLGVKQLEESPWSNIEKKYPVDSIHKGIVTSIEEYGVFVELETGIEGLVHVSEVS 355
Query: 182 DNFVKD---VGSIVSVGQEVKVRLIEANAETGRISLTMRESDD 221
+ K+ + + G+E++V+++ + R+SL+M+ D
Sbjct: 356 --WTKNSLPINQLFMRGEEIQVKVLSIDTAKSRMSLSMKRCQD 396
Score = 76 (31.8 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 267 EGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQV-GQEVSVRVLRI--S 323
+G V ++ G F+ L G EG + SE S N + + L + G+E+ V+VL I +
Sbjct: 326 KGIVTSIEEYGVFVELETGIEGLVHVSEVS--WTKNSLPINQLFMRGEEIQVKVLSIDTA 383
Query: 324 RGQVTLTMKKEDD 336
+ +++L+MK+ D
Sbjct: 384 KSRMSLSMKRCQD 396
Score = 67 (28.6 bits), Expect = 7.2e-05, Sum P(2) = 7.2e-05
Identities = 23/84 (27%), Positives = 40/84 (47%)
Query: 257 TTKFVKGQDLEGTVKNLTRSGAFIS-----LPEGEEGFLPTSEESDDGFANMMGGSSLQV 311
T K+ G + +KN+T G F+S L +G EG + T+E S + V
Sbjct: 403 TLKYPLGSIVSTKIKNITNLGIFVSFQDNTLNDGIEGLIRTTELSWS-LSPEAAIKKYNV 461
Query: 312 GQEVSVRVLRIS--RGQVTLTMKK 333
G V ++L I+ + ++ L +K+
Sbjct: 462 GDSVEAKILMINPNKSKIDLGVKQ 485
>ASPGD|ASPL0000069336 [details] [associations]
symbol:AN7262 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] EMBL:BN001304 eggNOG:NOG12793 EMBL:AACD01000124
RefSeq:XP_680531.1 EnsemblFungi:CADANIAT00000180 GeneID:2870142
KEGG:ani:AN7262.2 OMA:PIDGTEE Uniprot:Q5AWR8
Length = 1592
Score = 143 (55.4 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 62/271 (22%), Positives = 108/271 (39%)
Query: 389 EIGGEVSQMEAGSSIPKVQDQPTSSDDGM------ASVPSAVGETVEDHEAPSKEKGELA 442
E+ E ++A PK ++ S++ A+V + ET ++E + A
Sbjct: 396 EVTTETPAVDAVEEAPKATEEQPSTEGAAEQLTQEAAVEKSASETPFPEAVAAEEPAKEA 455
Query: 443 DIANRNDDPQNVMSGSSETLDGALQTIEKE--TEETTLNQTIEETPSTDVSGELAEQAL- 499
+ + S+E A + KE TEE +T T + E AE+ +
Sbjct: 456 VTEEPKAEETAAPTDSTEAQKEAAEEPVKEAVTEEPKAEETAAPTEPIEAQKEAAEEPVT 515
Query: 500 --STDGPKAGEFTESQTEDTIAKDEVQILTPAXXXXXXXXXXXALAPEGSVSTEKQIIGE 557
ST+ PKA E E ++ + ++ T A A P STE+ E
Sbjct: 516 EASTEEPKAEEAAEEPVKEAVTEEPKAEETAAPTEPIEAQKEAAEEPVTEASTEEPKAEE 575
Query: 558 AASTNLSGEIAEQVSVSDSPKDEEVVQNQTDDVIAKDEEQIQTPTT--ESEIP---SAGS 612
AA + +AE ++ E ++ Q + A +E +++ P E++ P +AG
Sbjct: 576 AAEEPVKEAVAEDPEAEETAAPAEPIEAQKE---AAEESKVEEPAVAPEADEPVREAAGD 632
Query: 613 LKEKESGPIPDKNGSITSSGEEPDVSSSQKT 643
LK +E D S+ ++ EP V + T
Sbjct: 633 LKGEEVATATDAVKSVETTTVEPAVEAEAAT 663
>TIGR_CMR|BA_3944 [details] [associations]
symbol:BA_3944 "polyribonucleotide nucleotidyltransferase"
species:198094 "Bacillus anthracis str. Ames" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012162
InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 Pfam:PF03726
PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 Pfam:PF03725
SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
ProtClustDB:PRK11824 RefSeq:NP_846188.1 RefSeq:YP_020583.1
RefSeq:YP_029909.1 ProteinModelPortal:Q81WM8 IntAct:Q81WM8
DNASU:1086877 EnsemblBacteria:EBBACT00000009810
EnsemblBacteria:EBBACT00000017999 EnsemblBacteria:EBBACT00000024497
GeneID:1086877 GeneID:2814451 GeneID:2852317 KEGG:ban:BA_3944
KEGG:bar:GBAA_3944 KEGG:bat:BAS3658
BioCyc:BANT260799:GJAJ-3716-MONOMER
BioCyc:BANT261594:GJ7F-3832-MONOMER Uniprot:Q81WM8
Length = 712
Score = 138 (53.6 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 30/90 (33%), Positives = 55/90 (61%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G + GKV+ ++ FGAF++ + DGLVH+S L+ V V +V +G + V++IE +
Sbjct: 623 GEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVKIGDVITVKVIEIDK 682
Query: 208 ETGRISLTMRESDDISKLQQQKDATASGDK 237
+ GR++L+ + + K +Q+K+A +K
Sbjct: 683 Q-GRVNLSRKV---LLKEEQEKEAAKEENK 708
>TIGR_CMR|SPO_3389 [details] [associations]
symbol:SPO_3389 "polyribonucleotide
nucleotidyltransferase" species:246200 "Ruegeria pomeroyi DSS-3"
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISS]
[GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
evidence=ISS] [GO:0006402 "mRNA catabolic process" evidence=ISS]
HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003723 GO:GO:0006396 GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 HSSP:P05055 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
HOGENOM:HOG000218326 ProtClustDB:PRK11824 RefSeq:YP_168585.1
ProteinModelPortal:Q5LN23 GeneID:3195958 KEGG:sil:SPO3389
PATRIC:23380231 Uniprot:Q5LN23
Length = 714
Score = 138 (53.6 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 29/73 (39%), Positives = 46/73 (63%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G +TGKV I FGAF++F DGLVHVS++ + + ++ GQEVKV+L+ +
Sbjct: 625 GQVYTGKVVKIVDFGAFVNFFGKRDGLVHVSQIENRRLNHPSDVLKEGQEVKVKLLGFD- 683
Query: 208 ETGRISLTMRESD 220
+ G++ L+M+ D
Sbjct: 684 DRGKVRLSMKVVD 696
>FB|FBgn0003137 [details] [associations]
symbol:Ppn "Papilin" species:7227 "Drosophila melanogaster"
[GO:0005604 "basement membrane" evidence=IDA] [GO:0005578
"proteinaceous extracellular matrix" evidence=NAS] [GO:0030198
"extracellular matrix organization" evidence=IMP] [GO:0005201
"extracellular matrix structural constituent" evidence=IMP]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004222
"metalloendopeptidase activity" evidence=IEA] [GO:0004867
"serine-type endopeptidase inhibitor activity" evidence=IEA]
InterPro:IPR002223 InterPro:IPR007110 InterPro:IPR008197
InterPro:IPR010294 InterPro:IPR010909 InterPro:IPR013273
Pfam:PF00014 Pfam:PF05986 Pfam:PF08686 PRINTS:PR00759
PRINTS:PR01857 PROSITE:PS50279 PROSITE:PS50835 PROSITE:PS50900
PROSITE:PS51390 SMART:SM00131 SMART:SM00217 EMBL:AE014297
GO:GO:0007275 Gene3D:2.60.40.10 InterPro:IPR013783 GO:GO:0004867
GO:GO:0008270 InterPro:IPR003598 SMART:SM00408 GO:GO:0030198
Gene3D:4.10.410.10 InterPro:IPR020901 SUPFAM:SSF57362
PROSITE:PS00280 GO:GO:0004222 GO:GO:0005604 InterPro:IPR013098
Pfam:PF07679 InterPro:IPR000884 Pfam:PF00090 SMART:SM00209
SUPFAM:SSF82895 PROSITE:PS50092 eggNOG:NOG242665 GO:GO:0005201
HSSP:P12111 SUPFAM:SSF57256 GeneTree:ENSGT00700000104482
EMBL:AF205357 EMBL:AF529179 EMBL:AF529180 EMBL:BT011127
RefSeq:NP_001163760.1 RefSeq:NP_001163761.1 RefSeq:NP_788751.2
RefSeq:NP_788752.2 UniGene:Dm.7007 ProteinModelPortal:Q868Z9
SMR:Q868Z9 IntAct:Q868Z9 MINT:MINT-330923 STRING:Q868Z9
PaxDb:Q868Z9 EnsemblMetazoa:FBtr0301837 GeneID:43872
KEGG:dme:Dmel_CG33103 UCSC:CG33103-RA CTD:43872 FlyBase:FBgn0003137
InParanoid:Q868Z9 OMA:GCCPDNI OrthoDB:EOG4Q5748 PhylomeDB:Q868Z9
GenomeRNAi:43872 NextBio:836259 Bgee:Q868Z9 GermOnline:CG33103
Uniprot:Q868Z9
Length = 2898
Score = 143 (55.4 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 97/443 (21%), Positives = 157/443 (35%)
Query: 215 TMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLT 274
T E++D+ Q D+ D+ +T T+ G D TT G EG+ +
Sbjct: 747 TTPEAEDL----MQSDSPTPYDEFEST--GTTFEGSGYDSESTTD--SGISTEGSGDDEE 798
Query: 275 RSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISRGQVTLTMKKE 334
S A L + +S+ + ++ + + SV S T T
Sbjct: 799 TSEASTDLSSSTDSGSTSSDSTSSDSSSSISSDATSEAPASSVSDSSDSTDASTETTGVS 858
Query: 335 DDVGSNLQLTQGVIHAATNPFVLAFRSNKDISSFLDERDKSATAAKKS--EKPTPIEIGG 392
DD T+ +T+ V + ++ D +S+T A S + +
Sbjct: 859 DDSTDVSSSTEASASESTD--VSGASDSTGSTNASDSTPESSTEASSSTDDSTDSSDNSS 916
Query: 393 EVSQMEAGSSIPKVQDQPTSSD---DGMASVPS----AVGETVEDHEAPSKEKGELADIA 445
VS+ +S V D SSD DG++S + + D A S +D
Sbjct: 917 NVSESSTEASSSSVSDSNDSSDGSTDGVSSTTENSSDSTSDATSDSTASSDSTDSTSDQT 976
Query: 446 NRNDDPQNVMSGSSETLDGALQTIEKETEETTLNQTIEETPSTDVSGELAEQALSTDGPK 505
+ S S TLD + T T E++ + + + +T S LS+DG
Sbjct: 977 TETTPESSTDSTESSTLDASSTTDASSTSESSSESSTDGSSTTSNSASSETTGLSSDGS- 1035
Query: 506 AGEFTESQTEDTIAKDEVQILTPAXXXXXXXXXXXALAPEGSV---STEKQIIGEAA-ST 561
T T T A D I T A + EGS S + I E++ ST
Sbjct: 1036 ----TTDAT--TAASDNTDITTDGSTDESTDGSSNA-STEGSTEGASEDTTISTESSGST 1088
Query: 562 NLSGEIAEQVSVSDSPKDEEVVQNQTDDVIAKDEEQIQTPTTE-SEIPSAGSLKEKESGP 620
+ IA S ++ E++ + + DV + +P+TE S + S + S
Sbjct: 1089 ESTDAIASDGSTTEGSTVEDLSSSTSSDVTSDSTITDSSPSTEVSGSTDSSSSTDGSSTD 1148
Query: 621 IPDKNGSITSSGEEPDVSSSQKT 643
S T E D + S T
Sbjct: 1149 ASSTEASSTDVTESTDSTVSGGT 1171
Score = 136 (52.9 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 92/438 (21%), Positives = 158/438 (36%)
Query: 204 EANAETGRIS--LTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFV 261
+A+ ET +S T S + + D + + D +T S S P + +T
Sbjct: 849 DASTETTGVSDDSTDVSSSTEASASESTDVSGASDSTGSTNASDSTPESSTEASSSTD-- 906
Query: 262 KGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLR 321
D N++ S S + +S+ S DG ++ SS S
Sbjct: 907 DSTDSSDNSSNVSESSTEASSSSVSDSN-DSSDGSTDGVSSTTENSSDSTSDATSDSTAS 965
Query: 322 ISRGQVTLTMKKEDDVGSNLQLTQGVIHAATNPFVLAFRSNKDISSFLDERDKSATAAKK 381
T E S+ T+ A++ + S S D S T+
Sbjct: 966 SDSTDSTSDQTTETTPESSTDSTESSTLDASSTTDASSTSESSSESSTD--GSSTTSNSA 1023
Query: 382 SEKPTPIEIGGEVSQMEAGSS--IPKVQDQPTS-SDDGMASVPSAVGETVEDHEAPSKEK 438
S + T + G + +S D T S DG ++ S G T E S++
Sbjct: 1024 SSETTGLSSDGSTTDATTAASDNTDITTDGSTDESTDGSSNA-STEGST----EGASEDT 1078
Query: 439 GELADIANRNDDPQNVMSGSSETLDGALQTIEKETE-ETTLNQTI-EETPSTDVSGELAE 496
+ + + + S S T ++ + T + T + TI + +PST+VSG +
Sbjct: 1079 TISTESSGSTESTDAIASDGSTTEGSTVEDLSSSTSSDVTSDSTITDSSPSTEVSGS-TD 1137
Query: 497 QALSTDGPKA-GEFTESQTEDTIAKDEVQILTPAXXXXXXXXXXXALAPEGSV-STEKQI 554
+ STDG TE+ + D + + ++ EGS ST +
Sbjct: 1138 SSSSTDGSSTDASSTEASSTD-VTESTDSTVSGGTSDTTESGPTEESTTEGSTESTTEGS 1196
Query: 555 IGEAASTNLSGEIAEQVSVSDSPKDEEVVQNQTDDVIAKDEEQIQTPTTESEIPSAGSLK 614
ST+L ++ S SD KD+E +++ + D E ++ + + P +
Sbjct: 1197 TDSTQSTDLDSTTSDIWSTSD--KDDE---SESSTPYSFDSEVTKSKPRKCK-PKKSTCA 1250
Query: 615 EKESGPIPDKNGSITSSG 632
+ E G PD G T G
Sbjct: 1251 KSEYGCCPD--GKSTPKG 1266
>CGD|CAL0000304 [details] [associations]
symbol:HYR3 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0009986 "cell surface"
evidence=ISS;IDA] [GO:0009277 "fungal-type cell wall" evidence=IDA]
[GO:0008150 "biological_process" evidence=ND] CGD:CAL0000304
GO:GO:0009986 eggNOG:NOG12793 GO:GO:0009277 EMBL:AACQ01000109
EMBL:AACQ01000108 RefSeq:XP_714160.1 RefSeq:XP_714203.1
GeneID:3644119 GeneID:3644197 KEGG:cal:CaO19.575
KEGG:cal:CaO19.8206 InterPro:IPR021031 Pfam:PF11765 Uniprot:Q59XA7
Length = 1249
Score = 138 (53.6 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 69/327 (21%), Positives = 134/327 (40%)
Query: 326 QVTLTMKKEDDVGSNLQLTQGVIHAATNPFVLAFRSNKDISSFLDERDKSATAAKKSEKP 385
+ T T+ + G+ L T GV+ +T+ F + I + S T A S+
Sbjct: 345 EYTTTITTTNSAGNPLTET-GVVDISTDSNGSWFTTTS-IFPTTSQSSSSETVASSSQPD 402
Query: 386 TP-IEIGGEVSQMEAGSSIPKVQDQPTSSDDGMASVPSAVGETVEDHEAPSKEKGELAD- 443
+ E S S+ P + +SS+ ++ VPS+ E+ + A E A
Sbjct: 403 SSSTEPSAFPSSTGDSSAEPSITSDYSSSE--LSVVPSSASESASESSAEPSSASESASE 460
Query: 444 -----IANRNDDPQNV--MSGSSETLDGALQTIEKETEETTLNQTIEETPSTDVSGELAE 496
+A+ ++ S +SE++ + + +E ++ +++ E+ S + E
Sbjct: 461 SGSESVASETSASESASEQSSTSESVSSEFASSDSSSEPSSASESSVESSS---ASEFVV 517
Query: 497 QALSTDGPKAGEFTESQTEDTIAKDEVQILTPAXXXXXXXXXXXALAPEGSVSTEKQIIG 556
+ +T+ + +ES E + A + V + + AP S ++E +
Sbjct: 518 PSSATETSVSESASESSAEPSSASESVA----SESAVSETSASESAAP--SSASETSVSE 571
Query: 557 EAASTNLSGEIAEQVSVSDSPKDEEVVQNQTDDVIAKDEEQIQTPTTESEIPSAGSLKEK 616
AAS++ S A + SV S + T + +A + +TP SE P++ S E+
Sbjct: 572 SAASSSASESFASESSVESSAVPSSASEFSTSESVASETPASETPA--SETPASESASEQ 629
Query: 617 ESGPIPDKNGSITSSGEEPDVSSSQKT 643
S + + I+S+ E SS K+
Sbjct: 630 SS--TSESSAEISSASESSAEPSSAKS 654
>UNIPROTKB|Q59XA7 [details] [associations]
symbol:HYR3 "Possible cell wall protein" species:237561
"Candida albicans SC5314" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0009277 "fungal-type cell wall" evidence=IDA] [GO:0009986 "cell
surface" evidence=ISS;IDA] CGD:CAL0000304 GO:GO:0009986
eggNOG:NOG12793 GO:GO:0009277 EMBL:AACQ01000109 EMBL:AACQ01000108
RefSeq:XP_714160.1 RefSeq:XP_714203.1 GeneID:3644119 GeneID:3644197
KEGG:cal:CaO19.575 KEGG:cal:CaO19.8206 InterPro:IPR021031
Pfam:PF11765 Uniprot:Q59XA7
Length = 1249
Score = 138 (53.6 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 69/327 (21%), Positives = 134/327 (40%)
Query: 326 QVTLTMKKEDDVGSNLQLTQGVIHAATNPFVLAFRSNKDISSFLDERDKSATAAKKSEKP 385
+ T T+ + G+ L T GV+ +T+ F + I + S T A S+
Sbjct: 345 EYTTTITTTNSAGNPLTET-GVVDISTDSNGSWFTTTS-IFPTTSQSSSSETVASSSQPD 402
Query: 386 TP-IEIGGEVSQMEAGSSIPKVQDQPTSSDDGMASVPSAVGETVEDHEAPSKEKGELAD- 443
+ E S S+ P + +SS+ ++ VPS+ E+ + A E A
Sbjct: 403 SSSTEPSAFPSSTGDSSAEPSITSDYSSSE--LSVVPSSASESASESSAEPSSASESASE 460
Query: 444 -----IANRNDDPQNV--MSGSSETLDGALQTIEKETEETTLNQTIEETPSTDVSGELAE 496
+A+ ++ S +SE++ + + +E ++ +++ E+ S + E
Sbjct: 461 SGSESVASETSASESASEQSSTSESVSSEFASSDSSSEPSSASESSVESSS---ASEFVV 517
Query: 497 QALSTDGPKAGEFTESQTEDTIAKDEVQILTPAXXXXXXXXXXXALAPEGSVSTEKQIIG 556
+ +T+ + +ES E + A + V + + AP S ++E +
Sbjct: 518 PSSATETSVSESASESSAEPSSASESVA----SESAVSETSASESAAP--SSASETSVSE 571
Query: 557 EAASTNLSGEIAEQVSVSDSPKDEEVVQNQTDDVIAKDEEQIQTPTTESEIPSAGSLKEK 616
AAS++ S A + SV S + T + +A + +TP SE P++ S E+
Sbjct: 572 SAASSSASESFASESSVESSAVPSSASEFSTSESVASETPASETPA--SETPASESASEQ 629
Query: 617 ESGPIPDKNGSITSSGEEPDVSSSQKT 643
S + + I+S+ E SS K+
Sbjct: 630 SS--TSESSAEISSASESSAEPSSAKS 654
>TIGR_CMR|APH_0273 [details] [associations]
symbol:APH_0273 "ribosomal protein S1" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 GO:GO:0003735 EMBL:CP000235
GenomeReviews:CP000235_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR002792 PROSITE:PS50926
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299
RefSeq:YP_504887.1 ProteinModelPortal:Q2GL64 STRING:Q2GL64
GeneID:3930767 KEGG:aph:APH_0273 PATRIC:20949120
BioCyc:APHA212042:GHPM-305-MONOMER Uniprot:Q2GL64
Length = 542
Score = 107 (42.7 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 24/79 (30%), Positives = 45/79 (56%)
Query: 148 GATFTGKVRSIQPFGAFIDFG-----AFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
G+ GKV+SI +G FI+ DGL+H++ +S + V ++ S GQ V+ ++
Sbjct: 207 GSIVEGKVKSITKYGVFIEIHESPTVGVVDGLLHITDISWSRVSHPSAVFSCGQTVRAKI 266
Query: 203 IEANAETGRISLTMRESDD 221
I + E +ISL +++ ++
Sbjct: 267 IRIDRENRKISLGVKQLEE 285
Score = 73 (30.8 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 21/77 (27%), Positives = 42/77 (54%)
Query: 259 KFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVR 318
++ G +GTV ++ G F+ L G EG + SE S +++ G+E+ V+
Sbjct: 294 RYPVGSIHKGTVTSIEDYGIFVELETGVEGLIHVSEVSWVR-SHLPVNQLFMRGEEIEVK 352
Query: 319 VLRI--SRGQVTLTMKK 333
VL I ++ +++L++K+
Sbjct: 353 VLSIDATKNRMSLSIKR 369
>UNIPROTKB|F1S842 [details] [associations]
symbol:LOC100157027 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 PROSITE:PS50293 SMART:SM00386 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
GeneTree:ENSGT00390000012228 Ensembl:ENSSSCT00000011594
ArrayExpress:F1S842 Uniprot:F1S842
Length = 1859
Score = 125 (49.1 bits), Expect = 3.0e-05, Sum P(3) = 3.0e-05
Identities = 29/86 (33%), Positives = 49/86 (56%)
Query: 140 VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
++ D+ PGA GKV +I+P+G ++ G GLV L+D +K+ VG EVK
Sbjct: 445 LRYHDIKPGALVKGKVLTIKPYGMLVNMGREIRGLVPPMHLADILMKNPEKKYHVGDEVK 504
Query: 200 VRLIEANAETGRISLTMRESDDISKL 225
R++ + E R+ +T++++ SKL
Sbjct: 505 CRVLLCDPEAKRLMMTLKKTLVESKL 530
Score = 63 (27.2 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
Identities = 29/119 (24%), Positives = 56/119 (47%)
Query: 213 SLTMRESDDISKLQQQKDATASGDKVRTTRRST-SKPGQKRD----EMKTTKFVK-GQDL 266
S T E+ ++ K+++ + +G + + RS+ + P K E+ +T+ ++ GQ L
Sbjct: 1268 SETPLETFNLKKIERCYVLSNAGPVLTLSLRSSRTNPDTKSKIVDPEINSTQDIEEGQLL 1327
Query: 267 EGTVKNLTRSGAFISLPEGEEGFLPTSEESDDG-FANMMGGSSLQVGQEVSVRVLRISR 324
G VK++ SG + L G S S N + L G+ ++ +VL ++R
Sbjct: 1328 RGYVKSIQPSGVLLGLGPSVTGLARYSHVSQHSPTRNALYDKYLPEGKLLTAKVLSLNR 1386
Score = 62 (26.9 bits), Expect = 3.0e-05, Sum P(3) = 3.0e-05
Identities = 21/86 (24%), Positives = 38/86 (44%)
Query: 252 RDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQV 311
+D ++ G L G V+++ G FI P G G P + SD F ++
Sbjct: 717 QDPKSFSEIHPGMLLIGFVRSIKDYGVFIQFPSGLSGLAPKAIMSDK-FVTSTSDHFVE- 774
Query: 312 GQEVSVRVLRIS--RGQVTLTMKKED 335
GQ V +V + + ++ L+++ D
Sbjct: 775 GQTVVAKVTNVDEEKQRMLLSLRLSD 800
Score = 50 (22.7 bits), Expect = 3.0e-05, Sum P(3) = 3.0e-05
Identities = 16/62 (25%), Positives = 28/62 (45%)
Query: 468 TIEKETEETTLNQTIEETPSTDVSGELAEQALSTDGPKAGEFTESQTEDTIAKDEVQILT 527
T ++E+ + Q + T ST G + L+ +GP A +D+ DE + +
Sbjct: 961 TFRFDSEKLQVGQGVSLTLSTTEPG-VTGLLLAVEGPAAKRTMRQTRKDSETVDEDEEVD 1019
Query: 528 PA 529
PA
Sbjct: 1020 PA 1021
>TIGR_CMR|SO_1209 [details] [associations]
symbol:SO_1209 "polyribonucleotide nucleotidyltransferase"
species:211586 "Shewanella oneidensis MR-1" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR009019
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0006402 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 SUPFAM:SSF54814 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591
HOGENOM:HOG000218326 ProtClustDB:PRK11824 RefSeq:NP_716833.2
ProteinModelPortal:Q8EHL1 SMR:Q8EHL1 GeneID:1169037
KEGG:son:SO_1209 PATRIC:23522076 Uniprot:Q8EHL1
Length = 699
Score = 134 (52.2 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 28/72 (38%), Positives = 47/72 (65%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G + GKV I FGAF++ DGLVH+S++SD V +V + + QEV V+++E +
Sbjct: 621 GRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVANVSDHLELNQEVTVKVMEVDR 680
Query: 208 ETGRISLTMRES 219
+ GR+ L+++E+
Sbjct: 681 Q-GRVRLSIKEA 691
Score = 124 (48.7 bits), Expect = 0.00037, P = 0.00037
Identities = 43/178 (24%), Positives = 90/178 (50%)
Query: 159 QPFGAFIDFGAFTDGLV--HVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTM 216
Q +GA + D + H + +SD+ + + + + E K+R + + G + +
Sbjct: 524 QAYGARVHILNVMDQAIGSHRADISDHAPRI--TTIKINPE-KIR--DVIGKGGAVIRAL 578
Query: 217 RESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRS 276
E + ++ + D T K+ ++ +K +R E T++ G+ G V +
Sbjct: 579 TEETGTT-IELEDDGTV---KIASSNGEATKEAIRRIEEITSEVEVGRIYNGKVIRIVDF 634
Query: 277 GAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISR-GQVTLTMKK 333
GAF+++ G++G + S+ SD+ AN+ L++ QEV+V+V+ + R G+V L++K+
Sbjct: 635 GAFVNILPGKDGLVHISQISDERVANV--SDHLELNQEVTVKVMEVDRQGRVRLSIKE 690
>UNIPROTKB|A7MB10 [details] [associations]
symbol:PDCD11 "Protein RRP5 homolog" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 SMART:SM00386 GO:GO:0005730 GO:GO:0006397
GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006364 InterPro:IPR022967
SMART:SM00316 EMBL:BC151277 IPI:IPI00867038 RefSeq:NP_001095573.1
UniGene:Bt.23141 ProteinModelPortal:A7MB10 SMR:A7MB10 PRIDE:A7MB10
GeneID:526867 KEGG:bta:526867 CTD:22984 eggNOG:COG0539
HOGENOM:HOG000088607 HOVERGEN:HBG108419 KO:K14792 NextBio:20874464
Uniprot:A7MB10
Length = 1874
Score = 114 (45.2 bits), Expect = 3.2e-05, Sum P(4) = 3.2e-05
Identities = 27/82 (32%), Positives = 45/82 (54%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
D+ PGA GKV +I+P G + G GLV L+D +K+ VG EVK R++
Sbjct: 449 DIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRVL 508
Query: 204 EANAETGRISLTMRESDDISKL 225
+ + ++ +T++++ SKL
Sbjct: 509 LCDPKAKKLMMTLKKTLVESKL 530
Score = 104 (41.7 bits), Expect = 0.00033, Sum P(4) = 0.00033
Identities = 25/82 (30%), Positives = 40/82 (48%)
Query: 139 PVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEV 198
P ++ PG G V++I+ +G F+ F + GL + LSD FV GQ V
Sbjct: 718 PKSFSEIHPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILSDKFVTSTSDHFVEGQTV 777
Query: 199 KVRLIEANAETGRISLTMRESD 220
++ + E R+ L++R SD
Sbjct: 778 VAKVTNVDEEKQRMLLSLRLSD 799
Score = 72 (30.4 bits), Expect = 3.2e-05, Sum P(4) = 3.2e-05
Identities = 26/80 (32%), Positives = 34/80 (42%)
Query: 256 KTTKFVKGQDLEGTVKNLTRSGAFISLPE-GEEGFLPTSEESDDGFANMMGGSSLQVGQE 314
K K KG DL+ V++L S A SL E G + +D F LQVGQ
Sbjct: 916 KAKKLKKGSDLQAIVQHLEESFAVASLVETGHLAAFSLTSHLNDTFR--FDSEKLQVGQG 973
Query: 315 VSVRVLRISRGQVTLTMKKE 334
VS+ + G L + E
Sbjct: 974 VSLTLQTTEPGVTGLLLAIE 993
Score = 70 (29.7 bits), Expect = 5.0e-05, Sum P(4) = 5.0e-05
Identities = 29/118 (24%), Positives = 56/118 (47%)
Query: 212 ISLTMRESDD-ISKLQQQKDATASGDKVRTTRRS--TSKPGQKRDEMKTTKFVK------ 262
+SLT++ ++ ++ L + A+ +R TR+ T ++ D VK
Sbjct: 974 VSLTLQTTEPGVTGLLLAIEGPAAKRTMRQTRKDSETVDEDEEVDPALVVGTVKKHTLSI 1033
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVL 320
G + GTVK++ + ++L +G G + S DD + L+VG++V+ RV+
Sbjct: 1034 GDVVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDDVPVGTSPTAKLKVGKKVTARVI 1091
Score = 69 (29.3 bits), Expect = 0.00027, Sum P(5) = 0.00027
Identities = 36/144 (25%), Positives = 61/144 (42%)
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G L G VKN+ G F+ P G G P + SD F ++ GQ V +V +
Sbjct: 727 GMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILSDK-FVTSTSDHFVE-GQTVVAKVTNV 784
Query: 323 S--RGQVTLTMKKEDDVGSNLQLTQGVIHAATNPFVLA--FRSNKDISSFLDERDKSATA 378
+ ++ L+++ D T G + A T+ +L+ + + S + RD S
Sbjct: 785 DEEKQRMLLSLRLSD-------CTLGDL-ATTSLLLLSQCLEERQGVRSLMSNRD-SVLI 835
Query: 379 AKKSEKPTPIEIGGEVSQ-MEAGS 401
+E + + EV + +E GS
Sbjct: 836 QTLAEMTPGMALDLEVQEVLEDGS 859
Score = 57 (25.1 bits), Expect = 3.2e-05, Sum P(4) = 3.2e-05
Identities = 25/80 (31%), Positives = 38/80 (47%)
Query: 341 LQLTQGVI-HAATNPFVLAFRSNKDIS-SFLDERDKSATAAKKSEKPTPIE---IGGEVS 395
LQL+ G + + A + D S S DE+ + AT KKS+K +E E+S
Sbjct: 1533 LQLSSGFVWDVGLDTLTPALPPHGDSSDSEEDEKPEQATQKKKSKKERELEKQKAEKELS 1592
Query: 396 QMEAGSSIPKVQDQPTSSDD 415
++E P QP S++D
Sbjct: 1593 RIEEALMDPG--RQPESAED 1610
Score = 45 (20.9 bits), Expect = 0.00027, Sum P(5) = 0.00027
Identities = 15/62 (24%), Positives = 25/62 (40%)
Query: 565 GEIAEQVSVSDSPK-DEEVVQNQTDDVIAKDEEQIQTPTTESEIPSAGSLKEKESGPIPD 623
G E V + K E+ Q Q + K +E Q P+ + + P K+ P P+
Sbjct: 1419 GRETEAVERNHEGKAKEKKKQKQKEKRTGKGQEGAQPPSKDKKEPQKPQAKKLGKRPHPE 1478
Query: 624 KN 625
+
Sbjct: 1479 SS 1480
Score = 45 (20.9 bits), Expect = 0.00027, Sum P(5) = 0.00027
Identities = 15/62 (24%), Positives = 27/62 (43%)
Query: 468 TIEKETEETTLNQTIEETPSTDVSGELAEQALSTDGPKAGEFTESQTEDTIAKDEVQILT 527
T ++E+ + Q + T T G + L+ +GP A +D+ DE + +
Sbjct: 960 TFRFDSEKLQVGQGVSLTLQTTEPG-VTGLLLAIEGPAAKRTMRQTRKDSETVDEDEEVD 1018
Query: 528 PA 529
PA
Sbjct: 1019 PA 1020
Score = 37 (18.1 bits), Expect = 3.2e-05, Sum P(4) = 3.2e-05
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 42 ISSQRFLLPLPSSVRFFSQFQSGSALQ 68
+S R LPL + + Q G+ L+
Sbjct: 208 VSGARAFLPLQKAQEYIRQKNKGAKLK 234
>UNIPROTKB|G5E5C4 [details] [associations]
symbol:PDCD11 "Protein RRP5 homolog" species:9913 "Bos
taurus" [GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
PROSITE:PS50293 SMART:SM00386 GO:GO:0005829 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
UniGene:Bt.23141 OMA:LHLADIY GeneTree:ENSGT00390000012228
EMBL:DAAA02059036 EMBL:DAAA02059037 Ensembl:ENSBTAT00000012818
Uniprot:G5E5C4
Length = 1874
Score = 114 (45.2 bits), Expect = 3.2e-05, Sum P(4) = 3.2e-05
Identities = 27/82 (32%), Positives = 45/82 (54%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
D+ PGA GKV +I+P G + G GLV L+D +K+ VG EVK R++
Sbjct: 449 DIKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRVL 508
Query: 204 EANAETGRISLTMRESDDISKL 225
+ + ++ +T++++ SKL
Sbjct: 509 LCDPKAKKLMMTLKKTLVESKL 530
Score = 104 (41.7 bits), Expect = 0.00033, Sum P(4) = 0.00033
Identities = 25/82 (30%), Positives = 40/82 (48%)
Query: 139 PVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEV 198
P ++ PG G V++I+ +G F+ F + GL + LSD FV GQ V
Sbjct: 718 PKSFSEIHPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILSDKFVTSTSDHFVEGQTV 777
Query: 199 KVRLIEANAETGRISLTMRESD 220
++ + E R+ L++R SD
Sbjct: 778 VAKVTNVDEEKQRMLLSLRLSD 799
Score = 72 (30.4 bits), Expect = 3.2e-05, Sum P(4) = 3.2e-05
Identities = 26/80 (32%), Positives = 34/80 (42%)
Query: 256 KTTKFVKGQDLEGTVKNLTRSGAFISLPE-GEEGFLPTSEESDDGFANMMGGSSLQVGQE 314
K K KG DL+ V++L S A SL E G + +D F LQVGQ
Sbjct: 916 KAKKLKKGSDLQAIVQHLEESFAVASLVETGHLAAFSLTSHLNDTFR--FDSEKLQVGQG 973
Query: 315 VSVRVLRISRGQVTLTMKKE 334
VS+ + G L + E
Sbjct: 974 VSLTLQTTEPGVTGLLLAIE 993
Score = 70 (29.7 bits), Expect = 5.0e-05, Sum P(4) = 5.0e-05
Identities = 29/118 (24%), Positives = 56/118 (47%)
Query: 212 ISLTMRESDD-ISKLQQQKDATASGDKVRTTRRS--TSKPGQKRDEMKTTKFVK------ 262
+SLT++ ++ ++ L + A+ +R TR+ T ++ D VK
Sbjct: 974 VSLTLQTTEPGVTGLLLAIEGPAAKRTMRQTRKDSETVDEDEEVDPALVVGTVKKHTLSI 1033
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVL 320
G + GTVK++ + ++L +G G + S DD + L+VG++V+ RV+
Sbjct: 1034 GDVVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDDVPVGTSPTAKLKVGKKVTARVI 1091
Score = 69 (29.3 bits), Expect = 0.00027, Sum P(5) = 0.00027
Identities = 36/144 (25%), Positives = 61/144 (42%)
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G L G VKN+ G F+ P G G P + SD F ++ GQ V +V +
Sbjct: 727 GMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILSDK-FVTSTSDHFVE-GQTVVAKVTNV 784
Query: 323 S--RGQVTLTMKKEDDVGSNLQLTQGVIHAATNPFVLA--FRSNKDISSFLDERDKSATA 378
+ ++ L+++ D T G + A T+ +L+ + + S + RD S
Sbjct: 785 DEEKQRMLLSLRLSD-------CTLGDL-ATTSLLLLSQCLEERQGVRSLMSNRD-SVLI 835
Query: 379 AKKSEKPTPIEIGGEVSQ-MEAGS 401
+E + + EV + +E GS
Sbjct: 836 QTLAEMTPGMALDLEVQEVLEDGS 859
Score = 57 (25.1 bits), Expect = 3.2e-05, Sum P(4) = 3.2e-05
Identities = 25/80 (31%), Positives = 38/80 (47%)
Query: 341 LQLTQGVI-HAATNPFVLAFRSNKDIS-SFLDERDKSATAAKKSEKPTPIE---IGGEVS 395
LQL+ G + + A + D S S DE+ + AT KKS+K +E E+S
Sbjct: 1533 LQLSSGFVWDVGLDTLTPALPPHGDSSDSEEDEKPEQATQKKKSKKERELEKQKAEKELS 1592
Query: 396 QMEAGSSIPKVQDQPTSSDD 415
++E P QP S++D
Sbjct: 1593 RIEEALMDPG--RQPESAED 1610
Score = 45 (20.9 bits), Expect = 0.00027, Sum P(5) = 0.00027
Identities = 15/62 (24%), Positives = 25/62 (40%)
Query: 565 GEIAEQVSVSDSPK-DEEVVQNQTDDVIAKDEEQIQTPTTESEIPSAGSLKEKESGPIPD 623
G E V + K E+ Q Q + K +E Q P+ + + P K+ P P+
Sbjct: 1419 GRETEAVERNHEGKAKEKKKQKQKEKRTGKGQEGAQPPSKDKKEPQKPQAKKLGKRPHPE 1478
Query: 624 KN 625
+
Sbjct: 1479 SS 1480
Score = 45 (20.9 bits), Expect = 0.00027, Sum P(5) = 0.00027
Identities = 15/62 (24%), Positives = 27/62 (43%)
Query: 468 TIEKETEETTLNQTIEETPSTDVSGELAEQALSTDGPKAGEFTESQTEDTIAKDEVQILT 527
T ++E+ + Q + T T G + L+ +GP A +D+ DE + +
Sbjct: 960 TFRFDSEKLQVGQGVSLTLQTTEPG-VTGLLLAIEGPAAKRTMRQTRKDSETVDEDEEVD 1018
Query: 528 PA 529
PA
Sbjct: 1019 PA 1020
Score = 37 (18.1 bits), Expect = 3.2e-05, Sum P(4) = 3.2e-05
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 42 ISSQRFLLPLPSSVRFFSQFQSGSALQ 68
+S R LPL + + Q G+ L+
Sbjct: 208 VSGARAFLPLQKAQEYIRQKNKGAKLK 234
>TIGR_CMR|NSE_0408 [details] [associations]
symbol:NSE_0408 "ribosomal protein S1" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:CP000237
GenomeReviews:CP000237_GR InterPro:IPR022967 SMART:SM00316
eggNOG:COG0539 HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW
RefSeq:YP_506295.1 ProteinModelPortal:Q2GE01 STRING:Q2GE01
GeneID:3932255 KEGG:nse:NSE_0408 PATRIC:22680873
ProtClustDB:CLSK2527828 BioCyc:NSEN222891:GHFU-431-MONOMER
Uniprot:Q2GE01
Length = 553
Score = 122 (48.0 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 34/92 (36%), Positives = 52/92 (56%)
Query: 132 ARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFI-----DFGAFTDGLVHVSRLSDNFVK 186
AR + +K D+I G +V+SI +G F+ D DGL++V+ +S V
Sbjct: 205 ARSEYISTIKEGDIIDG-----RVKSIASYGVFVQIHESDKVGVVDGLLYVNDISWARVT 259
Query: 187 DVGSIVSVGQEVKVRLIEANAETGRISLTMRE 218
SI SVGQEV+V++I + E GRISL +++
Sbjct: 260 HPSSIYSVGQEVRVKVIAVDPEKGRISLGVKQ 291
Score = 56 (24.8 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 259 KFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEES 296
K+ G G V ++ G F+ L EG EG + + E S
Sbjct: 303 KYTPGNVYPGVVTSVEDYGIFVRLEEGVEGLVHSGEIS 340
>UNIPROTKB|Q939N5 [details] [associations]
symbol:gspB "Platelet binding protein GspB" species:1302
"Streptococcus gordonii" [GO:0005515 "protein binding"
evidence=IPI] Pfam:PF00746 GO:GO:0005618 GO:GO:0005576
InterPro:IPR019948 InterPro:IPR019931 TIGRFAMs:TIGR01167
PROSITE:PS50847 EMBL:AY028381 PDB:3QC5 PDB:3QC6 PDB:4I8E
PDBsum:3QC5 PDBsum:3QC6 PDBsum:4I8E IntAct:Q939N5
InterPro:IPR022263 InterPro:IPR026465 TIGRFAMs:TIGR03715
TIGRFAMs:TIGR04224 Uniprot:Q939N5
Length = 3072
Score = 140 (54.3 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 79/438 (18%), Positives = 161/438 (36%)
Query: 213 SLTMRESDDIS-KLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVK 271
S+++ ES S + + A+ S + STS + T+ V + T
Sbjct: 2616 SVSVSESTSTSASVSANESASTSASVSASESASTSASVSASESASTSASVSASESASTSA 2675
Query: 272 NLTRS---GAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISRGQVT 328
+++ S S+ E S + + A+ S S V +
Sbjct: 2676 SVSASESASTSASVSASESASTSASVSASES-ASTSASVSASESASTSASVSASESASTS 2734
Query: 329 LTMKKEDDVGSNLQLTQGVIHAATNPFVLAFRSNKDISSFLDERDKSATAAKKSEKPTPI 388
++ + ++ ++ A+T+ V A S S+ + + ++T+A S +
Sbjct: 2735 ASVSASESASTSASVSAST-SASTSASVSANES-ASTSASVSASESASTSASVSASESA- 2791
Query: 389 EIGGEVSQMEAGSSIPKVQDQPTSSDDGMASVPSAVGETVEDHEAPSKEKGELADIANRN 448
VS E+ S+ V ++S ASV ++ + + ++ A ++
Sbjct: 2792 STSASVSASESASTSASVSASESASTS--ASVSASTSASTSASVSANESASTSASVSASE 2849
Query: 449 DDPQNVMSGSSETLDGALQTIEKETEETTLNQTIEETPSTDVSGELAEQALSTDGPKAGE 508
+ +SE+ + E+ T+ + + E+ ST S + A ++ A E
Sbjct: 2850 SASTSASVSASESASTSASVSASESASTSASVSASESASTSASVSASTSASTSASVSASE 2909
Query: 509 FTESQTEDTIAKDEVQILTPAXXXXXXXXXXXALAPEGSVSTEKQI-IGEAASTNLSGEI 567
+ T + + E + + +++ S ST + E+ASTN S +
Sbjct: 2910 --SASTSASASASESASTSASVSASESASTSASVSASESASTSASVSASESASTNASVSV 2967
Query: 568 AEQVSVSDSPK---DEEVVQNQTDDVIAKDEEQIQTPTTESEIPSAG-SLKEKESGPIPD 623
+E +SVS+S V+ +Q +D+ + + + S S SL E +S
Sbjct: 2968 SESMSVSESLSLSISTSVLHSQLNDIYESELYSLSLSESLSASQSLSQSLSESQSSSASQ 3027
Query: 624 KNGSITSSGEEPDVSSSQ 641
S G+ P S+
Sbjct: 3028 SMHDRISKGQLPRTGESE 3045
Score = 140 (54.3 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 88/478 (18%), Positives = 169/478 (35%)
Query: 169 AFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQ 228
A T V S S + V + S V E+ + + +S + S S +
Sbjct: 1417 ASTSASVSASE-SASTSASVSASTSASTSASVSASESASTSTSVSTSTSASTSAS-VSAS 1474
Query: 229 KDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRS---GAFISLPEG 285
+ A+ S + STS T+ V + T +++ S S+
Sbjct: 1475 ESASTSASVSASESASTSASVSASTSASTSASVSASESASTSASVSASESASTSASVSAS 1534
Query: 286 EEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISRGQVTLTMKKEDDVGSNLQLTQ 345
E S + + A+ S S V + ++ + ++ ++
Sbjct: 1535 ESASTSASVSASES-ASTSASVSASTSASTSASVSASESASTSASVSASESASTSASVSA 1593
Query: 346 GVIHAATNPFVLAFRSNKDISSFLDERDKSATAAKKSEKPTPIEIGGEVSQMEAGSSIPK 405
A+T+ V A S S+ + + ++T+A S + VS E+ S+
Sbjct: 1594 SE-SASTSASVSASES-ASTSASVSASESASTSASVSASESA-STSASVSASESASTSAS 1650
Query: 406 VQDQPTSSDDGMASVPSAVGETVEDHEAPSKEKGELADIANRNDDPQNVMSGSSETLDGA 465
V ++S ASV ++ + + S+ A ++ + +SE+ +
Sbjct: 1651 VSASESASTS--ASVSASESASTSASVSASESASTSASVSASESASTSASVSASESASTS 1708
Query: 466 LQTIEKETEETTLNQTIEETPSTDVSGELAEQALSTDGPKAGEFTESQTEDTIAKDEVQI 525
E+ T+ + + E+ ST S +E A ++ A E + T +++ E
Sbjct: 1709 ASVSASESASTSASVSASESASTSASVSASESASTSASVSASE--SASTSASVSASESAS 1766
Query: 526 LTPAXXXXXXXXXXXALAPEGSVSTEKQI-IGEAASTNLSGEIAEQVSVSDSPKDEEVVQ 584
+ + +++ S ST + E+AST+ S +E S S S E
Sbjct: 1767 TSASVSASESASTSASVSASESASTSASVSASESASTSASVSASESASTSASVSASESAS 1826
Query: 585 NQTDDVIAKDEEQIQTPTTESEIPS-AGSLKEKESGPIPDKNGSITSSGEEPDVSSSQ 641
V A + + SE S + S+ ES + TS+ VS+S+
Sbjct: 1827 TSAS-VSASESASTSASVSASESASTSASVSASESASTSASVSASTSTSTSASVSASE 1883
Score = 139 (54.0 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 83/457 (18%), Positives = 159/457 (34%)
Query: 188 VGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSK 247
V + S V E+ + + +S + S S + + A+ S +T STS
Sbjct: 871 VSASESASTSASVSASESASTSASVSASESASTSAS-VSASESASTSASVSASTSASTSA 929
Query: 248 PGQKRDEMKTTKFVKGQDLEGTVKNLTRS-GAFISLP-EGEEGFLPTSEESDDGFANMMG 305
+ T+ V + T +++ S A S E ++ S A+
Sbjct: 930 SVSASESASTSASVSASESASTSASVSASESASTSASVSASESASTSASVSASTSASTSA 989
Query: 306 GSSLQVGQEVSVRVLRISRGQVTLTMKKEDDVGSNLQLTQGVIHAATNPFVLAFRSNKDI 365
S S V + + ++ ++ ++ A+T+ V A S
Sbjct: 990 SVSASTSASTSASVSASTSASTSASVSASTSASTSASVSASE-SASTSASVSASES-AST 1047
Query: 366 SSFLDERDKSATAAKKSEKPTPIEIGGEVSQMEAGSSIPKVQDQPTSSDDGMASVPSAVG 425
S+ + ++T+A S + VS E+ S+ + + S ASV ++
Sbjct: 1048 SASVSASTSASTSASVSASESA-STSASVSASESAST--SASESASESASTSASVSASES 1104
Query: 426 ETVEDHEAPSKEKGELADIANRNDDPQNVMSGSSETLDGALQTIEKETEETTLNQTIEET 485
+ + S+ A ++ + +SE+ + E+ T+ +++ E+
Sbjct: 1105 ASTSASVSASESSSTSASVSASESSSTSASVSASESASTSASVSASESASTSASESASES 1164
Query: 486 PSTDVSGELAEQALSTDGPKAGEFTESQTEDTIAKDEVQILTPAXXXXXXXXXXXALAPE 545
ST S +E A ++ A E + S + A + V A E
Sbjct: 1165 ASTSASVSASESASTSASVSASE-SASTSASVSASESVSTSASVSASESASTSASVSASE 1223
Query: 546 GSVSTEKQIIGEAASTNLSGEIAEQVSVSDSPKDEEVVQNQTDDVIAKDEEQIQTPTTES 605
+ ++ + E+AST+ S +E S S S E V A + S
Sbjct: 1224 SASTSASESASESASTSASVSASESASTSASVSASESASTSAS-VSASTSASTSASVSAS 1282
Query: 606 EIPS-AGSLKEKESGPIPDKNGSITSSGEEPDVSSSQ 641
E S + S+ ES + S+ VS+S+
Sbjct: 1283 ESASTSASVSASESASTSASVSASESASTSASVSASE 1319
Score = 138 (53.6 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 78/442 (17%), Positives = 157/442 (35%)
Query: 205 ANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQ 264
A+ + + T + + + + A+ S + STS + + T+ V
Sbjct: 2093 ASVSASKSASTSESASTSASVSASESASTSASVSASESASTSASVSASESVSTSASVSAS 2152
Query: 265 D---LEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLR 321
D + +V + S+ E S + + A+ S S V
Sbjct: 2153 DSASISASVLASESASTSASVSASESASTSASVSASES-ASTSASVSASESASTSSSVSA 2211
Query: 322 ISRGQVTLTMKKEDDVGSNLQLTQGVIHAATNPFVLAFRSNKDISSFLDERDKSATAAKK 381
+ ++ + ++ ++ A+T+ V A S S+ + + ++T+A
Sbjct: 2212 SESASTSASVSASESASTSASVSAST-SASTSASVSASES-ASTSASVSASESASTSASV 2269
Query: 382 SEKPTPIEIGGEVSQMEAGSSIPKVQDQPTSSDDGMASVPSAVGETVEDHEAPSKEKGEL 441
S + VS E+ S+ V ++S ASV ++ + + S+
Sbjct: 2270 SASESA-STSASVSASESASTSASVSASESASTS--ASVSASESASTSASVSASESASTS 2326
Query: 442 ADIANRNDDPQNVMSGSSETLDGALQTIEKETEETTLNQTIEETPSTDVSGELAEQALST 501
A ++ + +SE+ + E+ T+ + + E+ ST S +E A ++
Sbjct: 2327 ASVSASTSASTSASVSASESASTSASVSSSESASTSASVSASESASTSASVSASESASTS 2386
Query: 502 DGPKAGEFTESQTEDTIAKDEVQILTPAXXXXXXXXXXXALAPEGSVSTEKQI-IGEAAS 560
A E + T +++ E + + +++ S ST + E+AS
Sbjct: 2387 ASVSASE--SASTSASVSASESASTSASVSASTSASTSASVSASESASTSASVSASESAS 2444
Query: 561 TNLSGEIAEQVSVSDSPKDEEVVQNQTDDVIAKDEEQIQTPTTESEIPS-AGSLKEKESG 619
T+ S +E S S S E V A + SE S + S+ ES
Sbjct: 2445 TSASVSASESASTSASVSASESASTSAS-VSASTSASTSASVSASESASTSASVSASESA 2503
Query: 620 PIPDKNGSITSSGEEPDVSSSQ 641
+ TS+ VS+S+
Sbjct: 2504 STSASVSASTSASTSASVSASE 2525
Score = 134 (52.2 bits), Expect = 0.00017, P = 0.00017
Identities = 83/457 (18%), Positives = 160/457 (35%)
Query: 188 VGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSK 247
V + S V E+ + + +S + S S + + A+ S +T STS
Sbjct: 931 VSASESASTSASVSASESASTSASVSASESASTSAS-VSASESASTSASVSASTSASTSA 989
Query: 248 PGQKRDEMKTTKFVKGQDLEGT---VKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMM 304
T+ V T V T + S+ E S + + A+
Sbjct: 990 SVSASTSASTSASVSASTSASTSASVSASTSASTSASVSASESASTSASVSASES-ASTS 1048
Query: 305 GGSSLQVGQEVSVRVLRISRGQVTLTMKKEDDVGSNLQLTQGVIHAATNPFVLAFRSNKD 364
S S V + ++ + ++ + A+T+ V A S
Sbjct: 1049 ASVSASTSASTSASVSASESASTSASVSASESASTSASESASE-SASTSASVSASES-AS 1106
Query: 365 ISSFLDERDKSATAAKKSEKPTPIEIGGEVSQMEAGSSIPKVQDQPTSSDDGMASVPSAV 424
S+ + + S+T+A S + VS E+ S+ V ++S S +
Sbjct: 1107 TSASVSASESSSTSASVSASESS-STSASVSASESASTSASVSASESASTSASESASESA 1165
Query: 425 GETVEDHEAPSKEKGELADIANRNDDPQNVMSGSSETLDGALQTIEKETEETTLNQTIEE 484
+ + S+ A ++ + +SE++ + E+ T+ + + E
Sbjct: 1166 STSAS--VSASESASTSASVSASESASTSASVSASESVSTSASVSASESASTSASVSASE 1223
Query: 485 TPSTDVSGELAEQALSTDGPKAGEFTESQTEDTIAKDEVQILTPAXXXXXXXXXXXALAP 544
+ ST S +E A ++ A E + T +++ E + + +++
Sbjct: 1224 SASTSASESASESASTSASVSASE--SASTSASVSASESASTSASVSASTSASTSASVSA 1281
Query: 545 EGSVSTEKQI-IGEAASTNLSGEIAEQVSVSDSPKDEEVVQNQTDDVIAKDEEQIQTPTT 603
S ST + E+AST+ S +E S S S E V V A + +
Sbjct: 1282 SESASTSASVSASESASTSASVSASESASTSASVSASESVSTSAS-VSASESASTSASVS 1340
Query: 604 ESEIPSAGSLKEKESGPIPDKNGSITSSGEEPDVSSS 640
SE SA + + + + S+++S E S+S
Sbjct: 1341 ASE--SASTSASESASESASTSASVSAS-ESASTSAS 1374
Score = 133 (51.9 bits), Expect = 0.00022, P = 0.00022
Identities = 83/459 (18%), Positives = 161/459 (35%)
Query: 188 VGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSK 247
V + S V E+ + + +S + S S + + A+ S + STS
Sbjct: 1471 VSASESASTSASVSASESASTSASVSASTSASTSAS-VSASESASTSASVSASESASTSA 1529
Query: 248 PGQKRDEMKTTKFVKGQDLEGT---VKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMM 304
+ T+ V + T V T + S+ E S + + A+
Sbjct: 1530 SVSASESASTSASVSASESASTSASVSASTSASTSASVSASESASTSASVSASES-ASTS 1588
Query: 305 GGSSLQVGQEVSVRVLRISRGQVTLTMKKEDDVGSNLQLTQGVIHAATNPFVLAFRSNKD 364
S S V + ++ + ++ ++ A+T+ V A S
Sbjct: 1589 ASVSASESASTSASVSASESASTSASVSASESASTSASVSASE-SASTSASVSASES-AS 1646
Query: 365 ISSFLDERDKSATAAKKSEKPTPIEIGGEVSQMEAGSSIPKVQDQPTSSDDGMASVPSAV 424
S+ + + ++T+A S + VS E+ S+ V ++S ASV ++
Sbjct: 1647 TSASVSASESASTSASVSASESA-STSASVSASESASTSASVSASESASTS--ASVSASE 1703
Query: 425 GETVEDHEAPSKEKGELADIANRNDDPQNVMSGSSETLDGALQTIEKETEETTLNQTIEE 484
+ + S+ A ++ + +SE+ + E+ T+ + + E
Sbjct: 1704 SASTSASVSASESASTSASVSASESASTSASVSASESASTSASVSASESASTSASVSASE 1763
Query: 485 TPSTDVSGELAEQALSTDGPKAGEFTESQTEDTIAKDEVQILTPAXXXXXXXXXXXALAP 544
+ ST S +E A ++ A E + T +++ E + + +++
Sbjct: 1764 SASTSASVSASESASTSASVSASE--SASTSASVSASESASTSASVSASESASTSASVSA 1821
Query: 545 EGSVSTEKQI-IGEAASTNLSGEIAEQVSVSDSPKDEEVVQNQTDDVIAKDEEQIQTPTT 603
S ST + E+AST+ S +E S S S E V A +
Sbjct: 1822 SESASTSASVSASESASTSASVSASESASTSASVSASESASTSAS-VSASTSTSTSASVS 1880
Query: 604 ESEIPS-AGSLKEKESGPIPDKNGSITSSGEEPDVSSSQ 641
SE S + S+ ES + S+ VS+S+
Sbjct: 1881 ASESASTSASVSASESASTSASVSASESASTSASVSASE 1919
Score = 133 (51.9 bits), Expect = 0.00022, P = 0.00022
Identities = 88/477 (18%), Positives = 167/477 (35%)
Query: 169 AFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQ 228
A T V S S + V + S V E+ + + +S + S S +
Sbjct: 877 ASTSASVSASE-SASTSASVSASESASTSASVSASESASTSASVSASTSASTSAS-VSAS 934
Query: 229 KDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRS-GAFISLPEGEE 287
+ A+ S + STS + T+ V + T +++ S A S
Sbjct: 935 ESASTSASVSASESASTSASVSASESASTSASVSASESASTSASVSASTSASTSASVSAS 994
Query: 288 GFLPTSEE-SDDGFANMMGGSSLQVGQEVSVRVLRISRGQVTLTMKKEDDVGSNLQLTQG 346
TS S A+ S S V + ++ + ++ ++
Sbjct: 995 TSASTSASVSASTSASTSASVSASTSASTSASVSASESASTSASVSASESASTSASVSAS 1054
Query: 347 VIHAATNPFVLAFRSNKDISSFLDERDKSATAAKKSEKPTPIEIGGEVSQMEAGSSIPKV 406
A+T+ V A S S+ + + ++T+A +S + VS E+ S+ V
Sbjct: 1055 T-SASTSASVSASES-ASTSASVSASESASTSASESASESA-STSASVSASESASTSASV 1111
Query: 407 QDQPTSSDDGMASVPSAVGETVEDHEAPSKEKGELADIANRNDDPQNVMSGSSETLDGAL 466
+SS ASV ++ + + S+ A ++ + +SE+ +
Sbjct: 1112 SASESSSTS--ASVSASESSSTSASVSASESASTSASVSASESASTSASESASESASTSA 1169
Query: 467 QTIEKETEETTLNQTIEETPSTDVSGELAEQALSTDGPKAGEFTESQTEDTIAKDEVQIL 526
E+ T+ + + E+ ST S +E ++ A E + T +++ E
Sbjct: 1170 SVSASESASTSASVSASESASTSASVSASESVSTSASVSASE--SASTSASVSASESAST 1227
Query: 527 TPAXXXXXXXXXXXALAPEGSVSTEKQI-IGEAASTNLSGEIAEQVSVSDSPKDEEVVQN 585
+ + +++ S ST + E+AST+ S + S S S E
Sbjct: 1228 SASESASESASTSASVSASESASTSASVSASESASTSASVSASTSASTSASVSASESAST 1287
Query: 586 QTDDVIAKDEEQIQTPTTESEIPS-AGSLKEKESGPIPDKNGSITSSGEEPDVSSSQ 641
V A + + SE S + S+ ES + S+ VS+S+
Sbjct: 1288 SAS-VSASESASTSASVSASESASTSASVSASESVSTSASVSASESASTSASVSASE 1343
Score = 133 (51.9 bits), Expect = 0.00022, P = 0.00022
Identities = 95/490 (19%), Positives = 171/490 (34%)
Query: 169 AFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQ 228
A T V S S + V + S V E+ + + +S + S S +
Sbjct: 1393 ASTSASVSASE-SASTSASVSASESASTSASVSASESASTSASVSASTSASTSAS-VSAS 1450
Query: 229 KDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRS-----GAFISLP 283
+ A+ S +T STS + T+ V + T +++ S A +S
Sbjct: 1451 ESASTSTSVSTSTSASTSASVSASESASTSASVSASESASTSASVSASTSASTSASVSAS 1510
Query: 284 EGEEGFLPTS-EESDDGFANMMGGSSLQVGQEVSVRVLRISRGQVTLTMKKEDDVG---S 339
E S ES A++ S VS + V+ + S
Sbjct: 1511 ESASTSASVSASESASTSASVSASESASTSASVSASESASTSASVSASTSASTSASVSAS 1570
Query: 340 NLQLTQGVIHAA----TNPFVLAFRSNKDISSFLDERDKSATAAKKSEKPTPIEIGGEVS 395
T + A+ T+ V A S S+ + + ++T+A S + VS
Sbjct: 1571 ESASTSASVSASESASTSASVSASES-ASTSASVSASESASTSASVSASESA-STSASVS 1628
Query: 396 QMEAGSSIPKVQDQPTSSDDGMASVPSAVGETVEDHEAPSKEKGELADIANRNDDPQNVM 455
E+ S+ V ++S ASV ++ + + S+ A ++ +
Sbjct: 1629 ASESASTSASVSASESASTS--ASVSASESASTSASVSASESASTSASVSASESASTSAS 1686
Query: 456 SGSSETLDGALQTIEKETEETTLNQTIEETPSTDVSGELAEQALSTDGPKAGEFTESQTE 515
+SE+ + E+ T+ + + E+ ST S +E A ++ A E + T
Sbjct: 1687 VSASESASTSASVSASESASTSASVSASESASTSASVSASESASTSASVSASE--SASTS 1744
Query: 516 DTIAKDEVQILTPAXXXXXXXXXXXALAPEGSVSTEKQI-IGEAASTNLSGEIAEQVSVS 574
+++ E + + +++ S ST + E+AST+ S +E S S
Sbjct: 1745 ASVSASESASTSASVSASESASTSASVSASESASTSASVSASESASTSASVSASESASTS 1804
Query: 575 DSPKDEEVVQNQTDDVIAKDEEQIQTPTTESEIPS-AGSLKEKESGPIPDKNGSITSSGE 633
S E V A + + SE S + S+ ES + S+
Sbjct: 1805 ASVSASESASTSAS-VSASESASTSASVSASESASTSASVSASESASTSASVSASESAST 1863
Query: 634 EPDVSSSQKT 643
VS+S T
Sbjct: 1864 SASVSASTST 1873
Score = 130 (50.8 bits), Expect = 0.00046, P = 0.00046
Identities = 84/477 (17%), Positives = 169/477 (35%)
Query: 169 AFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQ 228
A T V S S + V + S V + + + +S + S S +
Sbjct: 949 ASTSASVSASE-SASTSASVSASESASTSASVSASTSASTSASVSASTSASTSAS-VSAS 1006
Query: 229 KDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGT---VKNLTRSGAFISLPEG 285
A+ S +T STS + T+ V + T V T + S+
Sbjct: 1007 TSASTSASVSASTSASTSASVSASESASTSASVSASESASTSASVSASTSASTSASVSAS 1066
Query: 286 EEGFLPTS-EESDDGFANMMGGSSLQVGQEVSVRVLRISRGQVTLTMKKEDDVGSNLQLT 344
E S S+ + +S SV + +++ + +++ +
Sbjct: 1067 ESASTSASVSASESASTSASESASESASTSASVSASESASTSASVSASESSSTSASVSAS 1126
Query: 345 QGVIHAATNPFVLAFRSNKDISSFLDERDKSATAAKKSEKPTPIEIGGEVSQMEAGSSIP 404
+ ++T+ V A S S+ + + ++T+A +S + VS E+ S+
Sbjct: 1127 ES---SSTSASVSASES-ASTSASVSASESASTSASESASESA-STSASVSASESASTSA 1181
Query: 405 KVQDQPTSSDDGMASVPSAVGETVEDHEAPSKEKGELADIANRNDDPQNVMSGSSETLDG 464
V ++S S +V + + S+ A ++ + +SE+
Sbjct: 1182 SVSASESASTSASVSASESVSTSAS--VSASESASTSASVSASESASTSASESASESAST 1239
Query: 465 ALQTIEKETEETTLNQTIEETPSTDVSGELAEQALSTDGPKAGEFTESQTEDTIAKDEVQ 524
+ E+ T+ + + E+ ST S + A ++ A E + T +++ E
Sbjct: 1240 SASVSASESASTSASVSASESASTSASVSASTSASTSASVSASE--SASTSASVSASESA 1297
Query: 525 ILTPAXXXXXXXXXXXALAPEGSVSTEKQI-IGEAASTNLSGEIAEQVSVSDSPKDEEVV 583
+ + +++ SVST + E+AST+ S +E S S S E
Sbjct: 1298 STSASVSASESASTSASVSASESVSTSASVSASESASTSASVSASESASTSAS---ESAS 1354
Query: 584 QNQTDDVIAKDEEQIQTPTTESEIPSAGSLKEKESGPIPDKNGSITSSGEEPDVSSS 640
++ + E T + S SA + + + S+++S E S+S
Sbjct: 1355 ESASTSASVSASESASTSASVSASESASTSASVSASTSASTSASVSAS-ESASTSAS 1410
Score = 129 (50.5 bits), Expect = 0.00059, P = 0.00059
Identities = 82/461 (17%), Positives = 160/461 (34%)
Query: 188 VGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSK 247
V + S V E+ + + +S + S S + + A+ S + STS
Sbjct: 2173 VSASESASTSASVSASESASTSASVSASESASTS-SSVSASESASTSASVSASESASTSA 2231
Query: 248 PGQKRDEMKTTKFVKGQDLEGTVKNLTRS---GAFISLPEGEEGFLPTSEESDDGFANMM 304
T+ V + T +++ S S+ E S + + A+
Sbjct: 2232 SVSASTSASTSASVSASESASTSASVSASESASTSASVSASESASTSASVSASES-ASTS 2290
Query: 305 GGSSLQVGQEVSVRVLRISRGQVTLTMKKEDDVGSNLQLTQGVIHAATNPFVLAFRSNKD 364
S S V + ++ + ++ ++ A+T+ V A S
Sbjct: 2291 ASVSASESASTSASVSASESASTSASVSASESASTSASVSAST-SASTSASVSASES-AS 2348
Query: 365 ISSFLDERDKSATAAKKSEKPTPIEIGGEVSQMEAGSSIPKVQDQPTSSDDGMASVPSAV 424
S+ + + ++T+A S + VS E+ S+ V ++S ASV ++
Sbjct: 2349 TSASVSSSESASTSASVSASESA-STSASVSASESASTSASVSASESASTS--ASVSASE 2405
Query: 425 GETVEDHEAPSKEKGELADIANRNDDPQNVMSGSSETLDGALQTIEKETEETTLNQTIEE 484
+ + S A ++ + +SE+ + E+ T+ + + E
Sbjct: 2406 SASTSASVSASTSASTSASVSASESASTSASVSASESASTSASVSASESASTSASVSASE 2465
Query: 485 TPSTDVSGELAEQALSTDGPKAGEFTESQTEDTIAKDEVQILTPAXXXXXXXXXXXALAP 544
+ ST S + A ++ A E + T +++ E + + +++
Sbjct: 2466 SASTSASVSASTSASTSASVSASE--SASTSASVSASESASTSASVSASTSASTSASVSA 2523
Query: 545 EGSVSTEKQI-IGEAASTNLSGEIAEQVSVSDSPKDEEVVQNQTDDVIAKDEEQIQTPTT 603
S ST + E+AST+ S +E S S S E V A + +
Sbjct: 2524 SESASTSASVSASESASTSASVSASESASTSASVSASESASTSAS-VSASESASTSASVS 2582
Query: 604 ESEIPS-AGSLKEKESGPIPDKNGSITSSGEEPDVSSSQKT 643
SE S + S+ ES + S+ VS S+ T
Sbjct: 2583 ASESASTSASVSASESASTSASVSASMSASTSASVSVSEST 2623
Score = 129 (50.5 bits), Expect = 0.00059, P = 0.00059
Identities = 87/478 (18%), Positives = 164/478 (34%)
Query: 169 AFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQ 228
A T V S S + V + S V E+ + + +S + S S +
Sbjct: 1885 ASTSASVSASE-SASTSASVSASESASTSASVSASESASTSASVSASESASTSAS-VSAS 1942
Query: 229 KDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGT---VKNLTRSGAFISLPEG 285
+ A+ S + STS + T+ V + T V T + S+
Sbjct: 1943 ESASTSASVSASESASTSASVSASESASTSASVSASESASTSASVSASTSASTSASVSAS 2002
Query: 286 EEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISRGQVTLTMKKEDDVGSNLQLTQ 345
E S + + A+ S S V + ++ + ++ ++
Sbjct: 2003 ESASTSASVSASES-ASTSASVSASESASTSASVSASESASTSASVSASESASTSASVSA 2061
Query: 346 GVIHAATNPFVLAFRSNKDISSFLDERDKSATAAKKSEKPTPIEIGGEVSQMEAGSSIPK 405
A+T+ V A S +S S +A+ + K S + S
Sbjct: 2062 SE-SASTSASVSASESASTSASVSASESASTSASVSASKSASTSESASTSASVSASESAS 2120
Query: 406 VQDQPTSSDDGMASVPSAVGETVEDHEAPSKEKGELADIANRNDDPQNVMSGSSETLDGA 465
++S+ S + E+V + S + A I+ +V++ S + +
Sbjct: 2121 TSASVSASESASTSASVSASESVST--SASVSASDSASIS------ASVLASESASTSAS 2172
Query: 466 LQTIEKETEETTLNQTIEETPSTDVSGELAEQALSTDGPKAGEFTESQTEDTIAKDEVQI 525
+ E+ T+ + + E+ ST S +E A ++ A E + T +++ E
Sbjct: 2173 VSA--SESASTSASVSASESASTSASVSASESASTSSSVSASE--SASTSASVSASESAS 2228
Query: 526 LTPAXXXXXXXXXXXALAPEGSVSTEKQI-IGEAASTNLSGEIAEQVSVSDSPKDEEVVQ 584
+ + +++ S ST + E+AST+ S +E S S S E
Sbjct: 2229 TSASVSASTSASTSASVSASESASTSASVSASESASTSASVSASESASTSASVSASESAS 2288
Query: 585 NQTDDVIAKDEEQIQTPTTESEIPS-AGSLKEKESGPIPDKNGSITSSGEEPDVSSSQ 641
V A + + SE S + S+ ES + TS+ VS+S+
Sbjct: 2289 TSAS-VSASESASTSASVSASESASTSASVSASESASTSASVSASTSASTSASVSASE 2345
Score = 128 (50.1 bits), Expect = 0.00075, P = 0.00075
Identities = 88/478 (18%), Positives = 167/478 (34%)
Query: 169 AFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQ 228
A T V S S + V + S V E+ + + +S + S S +
Sbjct: 2275 ASTSASVSASE-SASTSASVSASESASTSASVSASESASTSASVSASESASTSAS-VSAS 2332
Query: 229 KDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRS---GAFISLPEG 285
A+ S + STS + T+ V + T +++ S S+
Sbjct: 2333 TSASTSASVSASESASTSASVSSSESASTSASVSASESASTSASVSASESASTSASVSAS 2392
Query: 286 EEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISRGQVTLTMKKEDDVGSNLQLTQ 345
E S + + A+ S S V + ++ + ++ ++
Sbjct: 2393 ESASTSASVSASES-ASTSASVSASTSASTSASVSASESASTSASVSASESASTSASVSA 2451
Query: 346 GVIHAATNPFVLAFRSNKDISSFLDERDKSATAAKKSEKPTPIEIGGEVSQMEAGSSIPK 405
A+T+ V A S S+ + ++T+A S + VS E+ S+
Sbjct: 2452 SE-SASTSASVSASES-ASTSASVSASTSASTSASVSASESA-STSASVSASESASTSAS 2508
Query: 406 VQDQPTSSDDGMASVPSAVGETVEDHEAPSKEKGELADIANRNDDPQNVMSGSSETLDGA 465
V ++S ASV ++ + + S+ A ++ + +SE+ +
Sbjct: 2509 VSASTSASTS--ASVSASESASTSASVSASESASTSASVSASESASTSASVSASESASTS 2566
Query: 466 LQTIEKETEETTLNQTIEETPSTDVSGELAEQALSTDGPKAGEFTESQTEDTIAKDEVQI 525
E+ T+ + + E+ ST S +E A ST + + S T +++ E
Sbjct: 2567 ASVSASESASTSASVSASESASTSASVSASESA-STSASVSASMSAS-TSASVSVSESTS 2624
Query: 526 LTPAXXXXXXXXXXXALAPEGSVSTEKQI-IGEAASTNLSGEIAEQVSVSDSPKDEEVVQ 584
+ + +++ S ST + E+AST+ S +E S S S E
Sbjct: 2625 TSASVSANESASTSASVSASESASTSASVSASESASTSASVSASESASTSASVSASESAS 2684
Query: 585 NQTDDVIAKDEEQIQTPTTESEIPS-AGSLKEKESGPIPDKNGSITSSGEEPDVSSSQ 641
V A + + SE S + S+ ES + S+ VS+S+
Sbjct: 2685 TSAS-VSASESASTSASVSASESASTSASVSASESASTSASVSASESASTSASVSASE 2741
Score = 127 (49.8 bits), Expect = 0.00097, P = 0.00096
Identities = 86/478 (17%), Positives = 167/478 (34%)
Query: 169 AFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQ 228
A T V S S + V + S V E+ + + +S + S S +
Sbjct: 1477 ASTSASVSASE-SASTSASVSASTSASTSASVSASESASTSASVSASESASTSAS-VSAS 1534
Query: 229 KDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRS---GAFISLPEG 285
+ A+ S + STS T+ V + T +++ S S+
Sbjct: 1535 ESASTSASVSASESASTSASVSASTSASTSASVSASESASTSASVSASESASTSASVSAS 1594
Query: 286 EEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISRGQVTLTMKKEDDVGSNLQLTQ 345
E S + + A+ S S V + ++ + ++ ++
Sbjct: 1595 ESASTSASVSASES-ASTSASVSASESASTSASVSASESASTSASVSASESASTSASVSA 1653
Query: 346 GVIHAATNPFVLAFRSNKDISSFLDERDKSATAAKKSEKPTPIEIGGEVSQMEAGSSIPK 405
A+T+ V A S S+ + + ++T+A S + VS E+ S+
Sbjct: 1654 SE-SASTSASVSASES-ASTSASVSASESASTSASVSASESA-STSASVSASESASTSAS 1710
Query: 406 VQDQPTSSDDGMASVPSAVGETVEDHEAPSKEKGELADIANRNDDPQNVMSGSSETLDGA 465
V ++S ASV ++ + + S+ A ++ + +SE+ +
Sbjct: 1711 VSASESASTS--ASVSASESASTSASVSASESASTSASVSASESASTSASVSASESASTS 1768
Query: 466 LQTIEKETEETTLNQTIEETPSTDVSGELAEQALSTDGPKAGEFTESQTEDTIAKDEVQI 525
E+ T+ + + E+ ST S +E A ++ A E + T +++ E
Sbjct: 1769 ASVSASESASTSASVSASESASTSASVSASESASTSASVSASE--SASTSASVSASESAS 1826
Query: 526 LTPAXXXXXXXXXXXALAPEGSVSTEKQI-IGEAASTNLSGEIAEQVSVSDSPKDEEVVQ 584
+ + +++ S ST + E+AST+ S + S S S E
Sbjct: 1827 TSASVSASESASTSASVSASESASTSASVSASESASTSASVSASTSTSTSASVSASESAS 1886
Query: 585 NQTDDVIAKDEEQIQTPTTESEIPS-AGSLKEKESGPIPDKNGSITSSGEEPDVSSSQ 641
V A + + SE S + S+ ES + S+ VS+S+
Sbjct: 1887 TSAS-VSASESASTSASVSASESASTSASVSASESASTSASVSASESASTSASVSASE 1943
>UNIPROTKB|P50849 [details] [associations]
symbol:pnp "Polyribonucleotide nucleotidyltransferase"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0005515 "protein binding" evidence=IPI] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 EMBL:AL009126
GenomeReviews:AL009126_GR GO:GO:0006402 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000175 GO:GO:0030420 InterPro:IPR022967
SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
ProtClustDB:PRK11824 EMBL:U29668 EMBL:Z80835 PIR:S70691
RefSeq:NP_389551.1 ProteinModelPortal:P50849 SMR:P50849
IntAct:P50849 EnsemblBacteria:EBBACT00000003076 GeneID:939646
KEGG:bsu:BSU16690 PATRIC:18975145 GenoList:BSU16690
BioCyc:BSUB:BSU16690-MONOMER Uniprot:P50849
Length = 705
Score = 133 (51.9 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 32/92 (34%), Positives = 55/92 (59%)
Query: 143 EDLIP----GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEV 198
EDL+ G + GKV+ I+ FGAF++ + DGLVH+S L+ V V +V +G E+
Sbjct: 614 EDLVREVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHISELALERVGKVEDVVKIGDEI 673
Query: 199 KVRLIEANAETGRISLTMRE--SDDISKLQQQ 228
V++ E + + GR++L+ + ++ K +QQ
Sbjct: 674 LVKVTEIDKQ-GRVNLSRKAVLREEKEKEEQQ 704
>GENEDB_PFALCIPARUM|PFB0915w [details] [associations]
symbol:PFB0915w "liver stage antigen 3"
species:5833 "Plasmodium falciparum" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] EMBL:AE001362 PIR:B71603 RefSeq:XP_001349701.1
ProteinModelPortal:O96275 IntAct:O96275 MINT:MINT-1589021
EnsemblProtists:PFB0915w:mRNA GeneID:812783 KEGG:pfa:PFB0915w
EuPathDB:PlasmoDB:PF3D7_0220000 OMA:KAQHANA Uniprot:O96275
Length = 1558
Score = 145 (56.1 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 74/340 (21%), Positives = 146/340 (42%)
Query: 284 EGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISRGQVTLTMKKEDDVGSNLQL 343
E +E L S+ +DD F +++ S+Q Q+ +V + E++V N++
Sbjct: 192 EVKENILEESQVNDDIFNSLV--KSVQQEQQHNVEEKVEESVEENDEESVEENVEENVEE 249
Query: 344 TQGVIHAATNPFVLAFRSNKDISSFLDERDKSATAAKKSEKPTPIEIGGEVSQMEAGSSI 403
A++ +A ++ I S ++E A ++ PT EI V+ S
Sbjct: 250 NDDESVASSVEESIASSVDESIDSSIEEN--VAPTVEEIVAPTVEEI---VAPSVVESVA 304
Query: 404 PKVQDQPTSS-DDGMA-SVPSAVGETVEDHEAPSKEKGELADIANRNDDPQNVMSGSSET 461
P V++ + ++ +A +V +V E VE+ A + E+ ++ +NV +E
Sbjct: 305 PSVEESVEENVEESVAENVEESVAENVEESVAENVEESVAENV--EESVAENVEESVAEN 362
Query: 462 LDGALQ-TIEKE---TEETTLNQTIEETPSTDVSGELAEQALSTDGPKAGEFTESQTEDT 517
++ + T+E+ T E + ++EE+ + V + + E E+
Sbjct: 363 VEEIVAPTVEESVAPTVEEIVAPSVEESVAPSVEEIVVPTVEESVAENVEEIVAPSVEEI 422
Query: 518 IAKDEVQILTPAXXXXXXXXXXXALAP--EGSV--STEKQIIG---EAASTNLSGEIAEQ 570
+A +I+ P +AP E SV S E+ ++ E+ + N+ +AE
Sbjct: 423 VAPSVEEIVAPTVEESVAPTVEEIVAPSVEESVAPSVEEIVVPTVEESVAENVEESVAEN 482
Query: 571 VSVSDSPKDEEVVQNQTDDVIAKDEEQIQTPTTESEI-PS 609
V +P EE+V ++++A E+I P+ E + PS
Sbjct: 483 VEEIVAPSVEEIVAPSVEEIVAPSVEEIVAPSVEEIVAPS 522
Score = 42 (19.8 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 17/70 (24%), Positives = 29/70 (41%)
Query: 573 VSDSPKDEEVVQNQTDDVIAKDEEQIQTPTTESEIPSAGSLKEKESGPIPDKNGSITSSG 632
V S D V+ D+ + K+ E+ E + + E+E + DK I +
Sbjct: 888 VFKSESDVITVEEIKDEPVQKEVEKETVSIIEEMEENIVDVLEEEKEDLTDK--MIDAVE 945
Query: 633 EEPDVSSSQK 642
E ++SS K
Sbjct: 946 ESIEISSDSK 955
>UNIPROTKB|O96275 [details] [associations]
symbol:PFB0915w "Liver stage antigen 3" species:36329
"Plasmodium falciparum 3D7" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
EMBL:AE001362 PIR:B71603 RefSeq:XP_001349701.1
ProteinModelPortal:O96275 IntAct:O96275 MINT:MINT-1589021
EnsemblProtists:PFB0915w:mRNA GeneID:812783 KEGG:pfa:PFB0915w
EuPathDB:PlasmoDB:PF3D7_0220000 OMA:KAQHANA Uniprot:O96275
Length = 1558
Score = 145 (56.1 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 74/340 (21%), Positives = 146/340 (42%)
Query: 284 EGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISRGQVTLTMKKEDDVGSNLQL 343
E +E L S+ +DD F +++ S+Q Q+ +V + E++V N++
Sbjct: 192 EVKENILEESQVNDDIFNSLV--KSVQQEQQHNVEEKVEESVEENDEESVEENVEENVEE 249
Query: 344 TQGVIHAATNPFVLAFRSNKDISSFLDERDKSATAAKKSEKPTPIEIGGEVSQMEAGSSI 403
A++ +A ++ I S ++E A ++ PT EI V+ S
Sbjct: 250 NDDESVASSVEESIASSVDESIDSSIEEN--VAPTVEEIVAPTVEEI---VAPSVVESVA 304
Query: 404 PKVQDQPTSS-DDGMA-SVPSAVGETVEDHEAPSKEKGELADIANRNDDPQNVMSGSSET 461
P V++ + ++ +A +V +V E VE+ A + E+ ++ +NV +E
Sbjct: 305 PSVEESVEENVEESVAENVEESVAENVEESVAENVEESVAENV--EESVAENVEESVAEN 362
Query: 462 LDGALQ-TIEKE---TEETTLNQTIEETPSTDVSGELAEQALSTDGPKAGEFTESQTEDT 517
++ + T+E+ T E + ++EE+ + V + + E E+
Sbjct: 363 VEEIVAPTVEESVAPTVEEIVAPSVEESVAPSVEEIVVPTVEESVAENVEEIVAPSVEEI 422
Query: 518 IAKDEVQILTPAXXXXXXXXXXXALAP--EGSV--STEKQIIG---EAASTNLSGEIAEQ 570
+A +I+ P +AP E SV S E+ ++ E+ + N+ +AE
Sbjct: 423 VAPSVEEIVAPTVEESVAPTVEEIVAPSVEESVAPSVEEIVVPTVEESVAENVEESVAEN 482
Query: 571 VSVSDSPKDEEVVQNQTDDVIAKDEEQIQTPTTESEI-PS 609
V +P EE+V ++++A E+I P+ E + PS
Sbjct: 483 VEEIVAPSVEEIVAPSVEEIVAPSVEEIVAPSVEEIVAPS 522
Score = 42 (19.8 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 17/70 (24%), Positives = 29/70 (41%)
Query: 573 VSDSPKDEEVVQNQTDDVIAKDEEQIQTPTTESEIPSAGSLKEKESGPIPDKNGSITSSG 632
V S D V+ D+ + K+ E+ E + + E+E + DK I +
Sbjct: 888 VFKSESDVITVEEIKDEPVQKEVEKETVSIIEEMEENIVDVLEEEKEDLTDK--MIDAVE 945
Query: 633 EEPDVSSSQK 642
E ++SS K
Sbjct: 946 ESIEISSDSK 955
>UNIPROTKB|F1PGL8 [details] [associations]
symbol:AKAP12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030819 "positive regulation of cAMP
biosynthetic process" evidence=IEA] [GO:0010739 "positive
regulation of protein kinase A signaling cascade" evidence=IEA]
[GO:0008179 "adenylate cyclase binding" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0007165 "signal transduction" evidence=IEA]
[GO:0006605 "protein targeting" evidence=IEA] InterPro:IPR001573
Pfam:PF03832 GO:GO:0005886 GO:GO:0005737 GO:GO:0006605
GO:GO:0007165 GO:GO:0030819 GO:GO:0010739 CTD:9590 KO:K16528
OMA:EQAGSPT GeneTree:ENSGT00550000074593 EMBL:AAEX03000271
RefSeq:XP_533451.2 Ensembl:ENSCAFT00000000664 GeneID:476246
KEGG:cfa:476246 Uniprot:F1PGL8
Length = 1760
Score = 137 (53.3 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 87/397 (21%), Positives = 153/397 (38%)
Query: 237 KVRTTRRSTSKPGQKR----DEMKTTKFVKGQD---LEGT--VKNLT-RSGAFISLPEGE 286
+ + ++S +P QK E +T V+G L+G + N+ RS ++IS E
Sbjct: 832 EAQQAQKSEEQPEQKAAVSVSEELSTDLVRGVTVTVLDGARALTNVEERSPSWISASVTE 891
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISRGQVTLTMKKEDDVGSNLQLTQG 346
T +E+ ++ G L +E SV + GQ + +D V S +LT
Sbjct: 892 P-LDETEDEAKPLTEDVFEGEVL--AEETSV-TKPLPEGQDAI----DDTVVSEAELTSE 943
Query: 347 VIHAATNPFVLAFRSNKDISSFLDERDKSATAAKKSEKPTPIEIGGEVSQMEAGSSIPKV 406
+ AA L + S + D + ++ ++ P E+ V ++E G +P++
Sbjct: 944 AVTAAEATGALCAEEAAEASGAEETADMVSAVSQLTDSPDTTEVATPVQEVEGG--VPRL 1001
Query: 407 QDQPTSSDDGMASVPSAVGETV-EDHEAPSKEKGELADIANRNDDPQNVMSGSSETLDGA 465
+DQ + + V AV E V E+ P E R + + D
Sbjct: 1002 EDQERRTQE----VLQAVAEKVREESPLPDTRGPEDTTRTTRGVEAEIPEKVEEAEEDSQ 1057
Query: 466 LQTIEKETEETTLNQTIEET-PSTDVSGELAEQALSTDGPKAGEFTESQTEDTIAKDEVQ 524
Q ++KETE L + +ET P T GE+ QA K + T+S E + + Q
Sbjct: 1058 RQDLKKETE-VPLEERAQETKPETLAQGEVIVQATPESLEKVPQVTDS-VESSELRTTCQ 1115
Query: 525 ILTPAXXXXXXXXXXXALAPEGSVS-TEKQIIGEAASTNLSG-EIAEQVSVSDSPKDEEV 582
T A+AP+ + + T+ + G + + + + + EV
Sbjct: 1116 AET-LVGATSESILEQAVAPDSAETLTDSETNGSTPVADFEALHVTQPEQIPGMHEGPEV 1174
Query: 583 VQNQTDDVIAKDEEQIQTPTTESEIPSAGSLKEKESG 619
V + E + P PS +E++ G
Sbjct: 1175 ASGAPPQVT--EAEAVPAPEEGPPAPSTFPSEEEDKG 1209
Score = 50 (22.7 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 206 NAETGRISLT---MRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTT 258
N + +++T RES+D+S+ +KD A V+ +K GQ +EM T
Sbjct: 82 NGQEEEVTVTDVGQRESEDVSERDSEKDMAAGSVVVQ----DITKDGQ--EEMPET 131
>POMBASE|SPAC10F6.02c [details] [associations]
symbol:prp22 "ATP-dependent RNA helicase Prp22"
species:4896 "Schizosaccharomyces pombe" [GO:0000390 "spliceosomal
complex disassembly" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=ISS] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR003029 InterPro:IPR007502 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00575 Pfam:PF04408 PROSITE:PS00690
PROSITE:PS50126 PROSITE:PS51194 SMART:SM00490 SMART:SM00847
PomBase:SPAC10F6.02c GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0005681 GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1643
InterPro:IPR011709 Pfam:PF07717 GO:GO:0004004 HOGENOM:HOG000175261
InterPro:IPR022967 SMART:SM00316 GO:GO:0000390 KO:K12818
OMA:NAWCYEN PIR:T37496 RefSeq:NP_593253.1 ProteinModelPortal:O42643
IntAct:O42643 STRING:O42643 PRIDE:O42643
EnsemblFungi:SPAC10F6.02c.1 GeneID:2542978 KEGG:spo:SPAC10F6.02c
OrthoDB:EOG45TGW9 NextBio:20804011 Uniprot:O42643
Length = 1168
Score = 133 (51.9 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 40/116 (34%), Positives = 60/116 (51%)
Query: 126 SRRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAF---TDGLVHVSRLSD 182
S +S ++R S P+ N + G ++G V I+ FGAF+ F TDGLVH+S +
Sbjct: 187 SGQSHSSRSSR-GPLLNAPTLYGI-YSGVVSGIKDFGAFVTLDGFRKRTDGLVHISNIQL 244
Query: 183 NFVKDVGS-IVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDK 237
N D S VS GQ V V++I + RISL+M+E + ++ D + K
Sbjct: 245 NGRLDHPSEAVSYGQPVFVKVIRIDESAKRISLSMKEVNQVTGEDLNPDQVSRSTK 300
>SGD|S000005535 [details] [associations]
symbol:TIR4 "Cell wall mannoprotein of the Srp1p/Tip1p
family" species:4932 "Saccharomyces cerevisiae" [GO:0009277
"fungal-type cell wall" evidence=IDA] [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0005576 "extracellular region" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0005618 "cell wall"
evidence=IEA] [GO:0006950 "response to stress" evidence=IEA]
[GO:0031225 "anchored to membrane" evidence=IEA] InterPro:IPR000992
Pfam:PF00660 PROSITE:PS00724 SGD:S000005535 GO:GO:0005576
EMBL:BK006948 GO:GO:0006950 GO:GO:0031225 eggNOG:NOG12793
GO:GO:0009277 EMBL:U43491 EMBL:Z74917 PIR:S61993 RefSeq:NP_014652.1
ProteinModelPortal:Q12218 DIP:DIP-5194N IntAct:Q12218
MINT:MINT-557897 STRING:Q12218 EnsemblFungi:YOR009W GeneID:854173
KEGG:sce:YOR009W CYGD:YOR009w GeneTree:ENSGT00700000105045
OMA:ISACACI NextBio:975967 Genevestigator:Q12218 GermOnline:YOR009W
Uniprot:Q12218
Length = 487
Score = 128 (50.1 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 61/316 (19%), Positives = 123/316 (38%)
Query: 329 LTMKKEDDVGSNL-QLTQGVIHAATNPFVLAFRSNKDISSFLDERDKSATAAKKSEKPT- 386
+T+ + G +L Q+ G++ A ++A S+ ++ E D SA + P
Sbjct: 42 ITLSYTPNSGFSLDQMPAGIMDIAAQ--LVANPSDDSYTTLYSEVDFSAVEHMLTMVPWY 99
Query: 387 PIEIGGEVSQMEAGSSIPKVQDQPTSSDDGMASVPSAVGETVEDHEAPSKEKGELADIAN 446
+ E+ M+A S+ TSS + +AS S++ + APS + + +A
Sbjct: 100 SSRLLPELEAMDA--SLTTSSSAATSSSE-VAS--SSIASSTSSSVAPSSSEVVSSSVAP 154
Query: 447 RNDD--PQNVMSGSSETLDGALQTIEKETEETTLNQTIEETPSTDVSGELAEQALSTDGP 504
+ + +V SSE + ++ + E +++ + E S+ V+ +E A S+ P
Sbjct: 155 SSSEVVSSSVAPSSSEVVSSSVASSSSEVASSSVAPSSSEVVSSSVASSSSEVASSSVAP 214
Query: 505 KAGEFTESQTEDTIAKDEVQILTPAXXXXXXXXXXXALAPEGSVSTEKQIIGEAASTNLS 564
+ E S ++A ++++ + ++AP S + + S
Sbjct: 215 SSSEVVSS----SVAPSSSEVVSSSVASSSSEVASSSVAPSSSEVVSSSVASSTSEATSS 270
Query: 565 GEIAEQVSVSDSPKDEEVVQNQTDDVIAKDEEQIQTPTTESEIPSAGSLKEKESGPIPDK 624
+ +VS S + + ++ E +P + SAG S +
Sbjct: 271 SAVTSSSAVSSSTESVSSSSVSSSSAVSSSEAVSSSPVSSVVSSSAGPA----SSSVAPY 326
Query: 625 NGSITSSGEEPDVSSS 640
N +I SS S S
Sbjct: 327 NSTIASSSSTAQTSIS 342
>TAIR|locus:2079429 [details] [associations]
symbol:RIF10 "AT3G03710" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IGI;ISS] [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=IGI]
[GO:0006401 "RNA catabolic process" evidence=IGI] [GO:0031425
"chloroplast RNA processing" evidence=IGI] [GO:0009507
"chloroplast" evidence=IDA] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0010323 "negative regulation of isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=IMP] [GO:0015995 "chlorophyll biosynthetic process"
evidence=IMP] [GO:0016120 "carotene biosynthetic process"
evidence=IMP] [GO:0016123 "xanthophyll biosynthetic process"
evidence=IMP] [GO:0016036 "cellular response to phosphate
starvation" evidence=IMP] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012162
InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 PROSITE:PS50084
PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0009570 EMBL:CP002686 GO:GO:0006397
GO:GO:0003723 GO:GO:0006401 GO:GO:0008033 GO:GO:0006402
GO:GO:0016036 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AC009540 InterPro:IPR020568 SUPFAM:SSF54211 EMBL:AC009327
GO:GO:0016123 GO:GO:0006364 GO:GO:0015995 GO:GO:0000175
GO:GO:0016120 InterPro:IPR022967 SMART:SM00316 Pfam:PF03725
SUPFAM:SSF55666 EMBL:AJ252123 EMBL:AF450480 IPI:IPI00534675
RefSeq:NP_187021.2 UniGene:At.26536 HSSP:Q53597
ProteinModelPortal:Q8GZQ3 SMR:Q8GZQ3 STRING:Q8GZQ3 PRIDE:Q8GZQ3
EnsemblPlants:AT3G03710.1 GeneID:821181 KEGG:ath:AT3G03710
GeneFarm:4127 TAIR:At3g03710 HOGENOM:HOG000218327 InParanoid:Q8GZQ3
KO:K00962 OMA:AQRIDNL PhylomeDB:Q8GZQ3 ProtClustDB:PLN00207
ArrayExpress:Q8GZQ3 Genevestigator:Q8GZQ3 GO:GO:0004654
GO:GO:0031425 GO:GO:0010323 Gene3D:1.10.10.400 PANTHER:PTHR11252
SUPFAM:SSF46915 TIGRFAMs:TIGR03591 Uniprot:Q8GZQ3
Length = 922
Score = 131 (51.2 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 35/127 (27%), Positives = 64/127 (50%)
Query: 154 KVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRIS 213
+++S+ P+GAF++ +GL H+S LS ++ VG + V+LIE N E G++
Sbjct: 769 EIKSMAPYGAFVEIAPGREGLCHISELSAEWLAKPEDAYKVGDRIDVKLIEVN-EKGQLR 827
Query: 214 LTMR----ESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGT 269
L++R ES+ Q+Q+ A S + R+ + + R +K G +L
Sbjct: 828 LSVRALLPESETDKDSQKQQPAGDSTKDKSSQRKYVNTSSKDRAAAGASKVSSGDELVLK 887
Query: 270 VKNLTRS 276
K++ R+
Sbjct: 888 KKDVRRA 894
>WB|WBGene00009391 [details] [associations]
symbol:F35C5.3 species:6239 "Caenorhabditis elegans"
[GO:0000003 "reproduction" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0006915 "apoptotic process" evidence=IMP]
InterPro:IPR011004 GO:GO:0006915 GO:GO:0016740 GO:GO:0048477
SUPFAM:SSF51161 GeneTree:ENSGT00700000104776 EMBL:Z81076 PIR:T21752
RefSeq:NP_496739.1 ProteinModelPortal:O45438 EnsemblMetazoa:F35C5.3
GeneID:174925 KEGG:cel:CELE_F35C5.3 UCSC:F35C5.3 CTD:174925
WormBase:F35C5.3 eggNOG:NOG147807 HOGENOM:HOG000198311
InParanoid:O45438 OMA:GAETHET NextBio:886066 Uniprot:O45438
Length = 394
Score = 125 (49.1 bits), Expect = 0.00012, P = 0.00012
Identities = 62/244 (25%), Positives = 108/244 (44%)
Query: 402 SIPKVQ--DQPTSSDDGMASVPSAVGETVEDHEAPSKEKGELADIANRNDDPQNVMSGSS 459
SIP + D PT++D + P+ ET EA S E E + D V SG S
Sbjct: 59 SIPPITATDAPTTADT--TAEPTKAHETTVAQEATS-EGAETHETTVGQDT--TVRSGES 113
Query: 460 -ETLDGALQTIEKE---TEETTLNQTIEETPSTDVSGELAEQALSTDGPKAGEFTESQTE 515
ET T+ +E ++ETT++Q + T VS + +S D + E T SQ E
Sbjct: 114 QETTVSQGTTVSQENTVSQETTVSQDTTVSQETTVS---QDTTVSQDTTVSQESTVSQ-E 169
Query: 516 DTIAKDEVQILTPAXXXXXXXXXXXALAPEGSVSTEKQIIGEAASTNLSGE--IAEQVSV 573
T+++D + ++ E +VS + + E T LS E ++++ +V
Sbjct: 170 TTVSQDTTVSQETSVSHETNVSPDTTVSQESTVSQDTTVSQE---TTLSQETTVSQETTV 226
Query: 574 S-DSPKDEEVVQNQTDDVIAKDEEQIQTPTTESEIPSAGSLKEKESGPIPDKNGSITSSG 632
S D+ +E +Q D +++D Q T +P +++ ++ ++NG+ +
Sbjct: 227 SQDTTVSQETTASQ-DTTVSQDTTVSQDTTV---VPQETTVEATKASEATEENGTTAVTP 282
Query: 633 EEPD 636
E D
Sbjct: 283 GESD 286
>TIGR_CMR|ECH_0726 [details] [associations]
symbol:ECH_0726 "polyribonucleotide
nucleotidyltransferase" species:205920 "Ehrlichia chaffeensis str.
Arkansas" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
[GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003723
GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175
InterPro:IPR022967 SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
HOGENOM:HOG000218326 ProtClustDB:PRK11824 RefSeq:YP_507529.1
ProteinModelPortal:Q2GGA4 STRING:Q2GGA4 GeneID:3927271
KEGG:ech:ECH_0726 PATRIC:20576896
BioCyc:ECHA205920:GJNR-729-MONOMER Uniprot:Q2GGA4
Length = 796
Score = 133 (51.9 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 34/90 (37%), Positives = 48/90 (53%)
Query: 134 KSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVS 193
KS + + E I G F G V I FGAF+ F GLVH+S + + + VGS++S
Sbjct: 613 KSMIMDIVTEPEI-GKVFEGTVVEIMKFGAFVSFLGGKKGLVHISEIRNEHISSVGSVIS 671
Query: 194 VGQEVKVRLIEANAETGRISLTMRESDDIS 223
+ +VKV +I + E I L+MR D S
Sbjct: 672 LNDKVKVLVIGIDRE--HIQLSMRRVDQES 699
Score = 43 (20.2 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 9/44 (20%), Positives = 24/44 (54%)
Query: 215 TMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTT 258
+ +ES + + + SG R++RR+++ P R+++ ++
Sbjct: 727 SFKESYNPNSRHGSHEKKRSGGSSRSSRRNSNGPNYYREDLPSS 770
>TIGR_CMR|NSE_0057 [details] [associations]
symbol:NSE_0057 "polyribonucleotide
nucleotidyltransferase" species:222891 "Neorickettsia sennetsu str.
Miyayama" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
[GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR009019 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 SUPFAM:SSF54814 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
HOGENOM:HOG000218326 ProtClustDB:PRK11824 RefSeq:YP_505958.1
ProteinModelPortal:Q2GEY8 STRING:Q2GEY8 GeneID:3931805
KEGG:nse:NSE_0057 PATRIC:22680229 BioCyc:NSEN222891:GHFU-94-MONOMER
Uniprot:Q2GEY8
Length = 757
Score = 128 (50.1 bits), Expect = 0.00015, P = 0.00015
Identities = 28/74 (37%), Positives = 44/74 (59%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G + GK+ S+ FG F+ +GLVH+S +S N V D+ + + GQ V VR+ + +
Sbjct: 632 GELYDGKIVSVVDFGLFVVLPNKQEGLVHISEISKNRVNDIRADYTEGQAVTVRIKDIGS 691
Query: 208 ETGRISLTMRESDD 221
+ G+I LTMR +D
Sbjct: 692 D-GKIKLTMRIDED 704
>ZFIN|ZDB-GENE-081015-2 [details] [associations]
symbol:rpgrb "retinitis pigmentosa GTPase regulator
b" species:7955 "Danio rerio" [GO:0060287 "epithelial cilium
movement involved in determination of left/right asymmetry"
evidence=IMP] [GO:0060271 "cilium morphogenesis" evidence=IMP]
[GO:0010842 "retina layer formation" evidence=IMP] [GO:0060041
"retina development in camera-type eye" evidence=IMP] [GO:0007018
"microtubule-based movement" evidence=IMP] INTERPRO:IPR000408
Pfam:PF00415 ZFIN:ZDB-GENE-081015-2 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0010842 PRINTS:PR00633
PROSITE:PS00626 PROSITE:PS50012 GO:GO:0060271 GO:GO:0060287
GeneTree:ENSGT00700000104160 EMBL:CR450831 IPI:IPI00798788
RefSeq:XP_685964.5 UniGene:Dr.100975 Ensembl:ENSDART00000088624
GeneID:557752 KEGG:dre:557752 CTD:557752 NextBio:20882140
Bgee:F1QM29 Uniprot:F1QM29
Length = 1413
Score = 131 (51.2 bits), Expect = 0.00015, P = 0.00015
Identities = 60/278 (21%), Positives = 122/278 (43%)
Query: 361 SNKDISSFLDERDKSATAAKKSEKPTPIEIGGEVSQMEAGSSIPKVQDQPTSSDDGMASV 420
S++D +E+ ++ A SE E G+ ++ A S + +++ SS +
Sbjct: 1039 SSEDEEKEKEEKSSDSSNAS-SEDEEEEEKNGDSAK--ASSEDEEEEEKSGSSVKASSED 1095
Query: 421 PSAVGETVEDHEAPSKEK-GELADIANRNDDPQNVMSGSSETLDGALQTIEKETEETTLN 479
E + +A SKE+ G+ A+ +N N + + S S T D L++ E+E E
Sbjct: 1096 EEEEEENGDSFKASSKEESGDSANASNVNSEEEEQKSKSEATDD--LESEEEEDNEDNEE 1153
Query: 480 QTIEETPST-DVSGELAEQALSTDGPKAGEFTESQTEDTIAKDEVQILTPAXXXXXXXXX 538
+ E + ST D S + +++ ++ ++GE +E +E + E
Sbjct: 1154 EKSETSASTEDESNDDEDKSETSQEEESGEESEGNSESRSERSEEDDEDEESEKEESEVE 1213
Query: 539 XXALAPEGSVSTEKQIIGEAASTNLSGEIAEQVSVSDSPKDEEVVQNQTDDVIA-KDEEQ 597
A E +T ++ E S++ E +E + + + E ++++D+ + KDEE+
Sbjct: 1214 SEAEEDETGENTSEEDDEEQESSSEDEEKSESEAEGEEEESEGDQEDESDEETSDKDEEE 1273
Query: 598 IQTPTTESEIPSAGSLKEKESGPIPDKNGSITSSGEEP 635
++ E E + +E+E ++N + EEP
Sbjct: 1274 EESENEEEEEEESKVEEEEEESNEEEENEEEEAEEEEP 1311
Score = 125 (49.1 bits), Expect = 0.00068, P = 0.00068
Identities = 86/453 (18%), Positives = 177/453 (39%)
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRST--SKPGQKRDE--MKTTK 259
+ +A+T + R+ +D KL++ K + + S S+ Q +D K T
Sbjct: 765 DTSAKTKKSRAEQRQVED--KLKKTKMVPTVVSEAASVSESALESEENQMKDNPLTKVTS 822
Query: 260 FVKGQDLEGTVKNLTRSGA--FISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSV 317
++G + G+ + + A +S +E P S + + + S GQE
Sbjct: 823 LLQGMGMGGSALLVGEAVASQLLSQSTPQEMPKPLSRQRTLSDVSSLSESYDVSGQE--- 879
Query: 318 RVLRISRGQVTLTMKKEDDVGSNLQLTQGVIHAATNPFVLAFRSNKDISSFLDERDKSAT 377
R VT+ +K + D S+ + + T+ ++ ++ ++ + ++S
Sbjct: 880 EAREAERTAVTINVKADPDT-SDRDTERSRSESKTD-------AHSEMGTYNRKEEES-- 929
Query: 378 AAKKSEKPTPIEIGGEVSQMEAGSSIPKVQDQPTSSDDGMASVPSAVGETVEDHEAPSKE 437
+ E + E +E + +D+ +D + VGE +D E +
Sbjct: 930 --DEEESEGSVNERDETEDVEESDGLGNRRDKSEEVEDSDSKTHDKVGENDDDSEGDEDD 987
Query: 438 KGELADIANRNDDPQNVMSGSSETLDGALQTIEKETEETT----LNQTIEETPSTDVSGE 493
+ D + + + + T + + E+E EE + +N T+ + S D E
Sbjct: 988 DTMIKDSSEEEESEEEKTVNDTVT-KASSENEEREEEEKSNDSEVNDTMTKHSSEDEEKE 1046
Query: 494 LAEQALSTDGPKAGEFTESQTEDTIAKDEVQILTPAXXXXXXXXXXXALAPEGSVSTEKQ 553
E+ S+D A +E + E+ D + + + E E+
Sbjct: 1047 KEEK--SSDSSNAS--SEDEEEEEKNGDSAKASSEDEEEEEKSGSSVKASSEDEEEEEEN 1102
Query: 554 IIG-EAASTNLSGEIAEQVSVSDSPKDEEVVQNQTDDVIAKDEEQIQTPTTESEIPSAGS 612
+A+S SG+ A +V+ ++++ TDD+ +++EE + E SA +
Sbjct: 1103 GDSFKASSKEESGDSANASNVNSEEEEQKSKSEATDDLESEEEEDNEDNEEEKSETSAST 1162
Query: 613 LKEKESGPIPDKNGSITS--SGEEPDVSSSQKT 643
E ES DK+ + SGEE + +S ++
Sbjct: 1163 --EDESNDDEDKSETSQEEESGEESEGNSESRS 1193
>POMBASE|SPBC1711.05 [details] [associations]
symbol:SPBC1711.05 "nucleocytoplasmic transport
chaperone Srp40 (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0003674 "molecular_function" evidence=ND] [GO:0005730
"nucleolus" evidence=ISO;IDA] [GO:0006605 "protein targeting"
evidence=NAS] [GO:0006913 "nucleocytoplasmic transport"
evidence=ISM] InterPro:IPR006594 PROSITE:PS50896 SMART:SM00667
PomBase:SPBC1711.05 Pfam:PF05022 GO:GO:0006605 GO:GO:0005730
EMBL:CU329671 GO:GO:0006913 InterPro:IPR013720 Pfam:PF08513
eggNOG:NOG318801 InterPro:IPR007718 OrthoDB:EOG4M68TB
RefSeq:NP_595878.1 ProteinModelPortal:Q9P785 STRING:Q9P785
PRIDE:Q9P785 EnsemblFungi:SPBC1711.05.1 GeneID:2539687
KEGG:spo:SPBC1711.05 OMA:RKHFSRI NextBio:20800841 Uniprot:Q9P785
Length = 451
Score = 125 (49.1 bits), Expect = 0.00015, P = 0.00015
Identities = 58/276 (21%), Positives = 108/276 (39%)
Query: 370 DERDKSATAAKKSEKPTPIEIGGEVSQMEAGSSIPKVQDQPTSSDDGMASVPSAVGETVE 429
DE D S++ ++ S + S+ E+ S + D +SS D S S+ G
Sbjct: 110 DESDSSSSESESSSEDNDSSSSSSDSESESSS---EDSDSSSSSSDS-ESESSSEGSDSS 165
Query: 430 DHEAPSKEKGELADIANRNDDPQNVMSGSSETLDGALQTIEKETEETTLNQTIEETPSTD 489
+ S+ + D + + + SSE D + + + E+E ++ + S+
Sbjct: 166 SSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSS 225
Query: 490 VSGELAEQALSTDGPKAGEFTESQTEDTIAKDEVQILTPAXXXXXXXXXXXALAPEGSVS 549
S +E S+ E +ES +ED+ + + E S
Sbjct: 226 ESESSSEDNDSSSSSSDSE-SESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSS 284
Query: 550 TEKQIIGEAASTNLSGEIAEQVSVSDSPKDEEVVQNQTDDVIAKD-EEQIQTPTTESEIP 608
++ E+ S++ + S SDS E + TD + + Q T +T SE
Sbjct: 285 SDSSD-SESESSSEDSDSTSSSSDSDSSSSSEDGNSNTDTTTSGEVSAQSSTNSTSSE-- 341
Query: 609 SAGSLKEKESGPIPDKNGSITSSGEEPDVSS-SQKT 643
+ S+K+++S I DK+ +E S+ S +T
Sbjct: 342 ESTSVKDEDSSKIHDKSLKRKHEDDESSTSTKSSRT 377
>UNIPROTKB|Q485L6 [details] [associations]
symbol:CPS_1507 "Putative flagellar hook-length control
protein" species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] Pfam:PF02120 GO:GO:0019861
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG3144 KO:K02414
InterPro:IPR021136 RefSeq:YP_268249.1 STRING:Q485L6 GeneID:3521479
KEGG:cps:CPS_1507 PATRIC:21466221
BioCyc:CPSY167879:GI48-1588-MONOMER Uniprot:Q485L6
Length = 660
Score = 127 (49.8 bits), Expect = 0.00016, P = 0.00016
Identities = 92/460 (20%), Positives = 176/460 (38%)
Query: 185 VKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATAS--GDKVRTTR 242
V D+ VSV ++ K ++ EAN S ++ ES++ L D T + G+K +++
Sbjct: 95 VSDISKKVSVDEKQK-KVSEANQNGSTKSGSLAESEEFISLLYNSDQTLAKAGEKTESSK 153
Query: 243 -RSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFA 301
+ST GQ +T V +D+ G ++ A + G ++ D+ A
Sbjct: 154 DKSTVAFGQSTSATNSTNIVN-KDVNGQADSVQSENA-----DPVSGHKLSAFSKDELLA 207
Query: 302 NMMGGSSLQVGQEVSVRVLR---ISRGQVTLTMKKEDDVGSNLQLTQGVIHAATNPFVLA 358
++ V + S +VL+ +S T+K + L TQ + A N +
Sbjct: 208 RAQLKNNNTVTPQSSDQVLKDYQLSLQSQQNTIKSQSITSEQLMNTQ-LADAQLNNKIT- 265
Query: 359 FRSNKDISSFLDERDKSATAAKKSEK--PTPIEIGGEVSQMEAGSSIPKVQDQPTSSDDG 416
D+++ + + +K+ K P+E G+ + AG D S+
Sbjct: 266 -----DLAAGVAQSNKNQLTEKVDTGLYQLPVEPIGK-GNITAG-------DMTHSAKQS 312
Query: 417 MASVPSAVGETVEDHEAPSKEKGELADI--ANRNDDPQNVMSGSSETLDGALQTIEKE-- 472
+A GE D S + ++A N + D V + ET+ L ++ E
Sbjct: 313 VARAEVNQGEIEADLAVKSNKDSDMASTKTVNSSSDALKVNPSNRETVTSPLSKVDAEKM 372
Query: 473 -TEETTLNQTIEETPSTDVSGELAEQALSTDGP-KAGEFTESQTEDTIAKDEVQILTPAX 530
E T ++E P + +Q + T +A + ++Q + E Q+
Sbjct: 373 VAERTRQTASVENIPKEQIVTAQEKQPVMTSAQLQALQQVQAQQKTQSVSSEPQVNDDVS 432
Query: 531 XXXXXXXXXXALAP-EGSVSTEKQIIGEAASTNLSGEIAEQVSVSDSPKDEEVV-QNQTD 588
P E V T ++I A +S A+ V + + + + ++Q
Sbjct: 433 EEYIDPMLLSEEKPIEQGVKTTAKVIDNIAMRTISELQAQTVQATQTKQSNDAYFEHQVS 492
Query: 589 DV----IAKDEEQIQTPTTESEIPSAGSLKEKESGPIPDK 624
+V +A D QIQ + + + ++ + + DK
Sbjct: 493 EVLNHNVASDSVQIQKNNVQLQQETISIFRKDFADAVKDK 532
>TIGR_CMR|CPS_1507 [details] [associations]
symbol:CPS_1507 "putative flagellar hook-length control
protein" species:167879 "Colwellia psychrerythraea 34H" [GO:0001539
"ciliary or flagellar motility" evidence=ISS] [GO:0003674
"molecular_function" evidence=ND] [GO:0009296 "flagellum assembly"
evidence=ISS] Pfam:PF02120 GO:GO:0019861 EMBL:CP000083
GenomeReviews:CP000083_GR eggNOG:COG3144 KO:K02414
InterPro:IPR021136 RefSeq:YP_268249.1 STRING:Q485L6 GeneID:3521479
KEGG:cps:CPS_1507 PATRIC:21466221
BioCyc:CPSY167879:GI48-1588-MONOMER Uniprot:Q485L6
Length = 660
Score = 127 (49.8 bits), Expect = 0.00016, P = 0.00016
Identities = 92/460 (20%), Positives = 176/460 (38%)
Query: 185 VKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATAS--GDKVRTTR 242
V D+ VSV ++ K ++ EAN S ++ ES++ L D T + G+K +++
Sbjct: 95 VSDISKKVSVDEKQK-KVSEANQNGSTKSGSLAESEEFISLLYNSDQTLAKAGEKTESSK 153
Query: 243 -RSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFA 301
+ST GQ +T V +D+ G ++ A + G ++ D+ A
Sbjct: 154 DKSTVAFGQSTSATNSTNIVN-KDVNGQADSVQSENA-----DPVSGHKLSAFSKDELLA 207
Query: 302 NMMGGSSLQVGQEVSVRVLR---ISRGQVTLTMKKEDDVGSNLQLTQGVIHAATNPFVLA 358
++ V + S +VL+ +S T+K + L TQ + A N +
Sbjct: 208 RAQLKNNNTVTPQSSDQVLKDYQLSLQSQQNTIKSQSITSEQLMNTQ-LADAQLNNKIT- 265
Query: 359 FRSNKDISSFLDERDKSATAAKKSEK--PTPIEIGGEVSQMEAGSSIPKVQDQPTSSDDG 416
D+++ + + +K+ K P+E G+ + AG D S+
Sbjct: 266 -----DLAAGVAQSNKNQLTEKVDTGLYQLPVEPIGK-GNITAG-------DMTHSAKQS 312
Query: 417 MASVPSAVGETVEDHEAPSKEKGELADI--ANRNDDPQNVMSGSSETLDGALQTIEKE-- 472
+A GE D S + ++A N + D V + ET+ L ++ E
Sbjct: 313 VARAEVNQGEIEADLAVKSNKDSDMASTKTVNSSSDALKVNPSNRETVTSPLSKVDAEKM 372
Query: 473 -TEETTLNQTIEETPSTDVSGELAEQALSTDGP-KAGEFTESQTEDTIAKDEVQILTPAX 530
E T ++E P + +Q + T +A + ++Q + E Q+
Sbjct: 373 VAERTRQTASVENIPKEQIVTAQEKQPVMTSAQLQALQQVQAQQKTQSVSSEPQVNDDVS 432
Query: 531 XXXXXXXXXXALAP-EGSVSTEKQIIGEAASTNLSGEIAEQVSVSDSPKDEEVV-QNQTD 588
P E V T ++I A +S A+ V + + + + ++Q
Sbjct: 433 EEYIDPMLLSEEKPIEQGVKTTAKVIDNIAMRTISELQAQTVQATQTKQSNDAYFEHQVS 492
Query: 589 DV----IAKDEEQIQTPTTESEIPSAGSLKEKESGPIPDK 624
+V +A D QIQ + + + ++ + + DK
Sbjct: 493 EVLNHNVASDSVQIQKNNVQLQQETISIFRKDFADAVKDK 532
>TAIR|locus:504955937 [details] [associations]
symbol:AT2G22795 "AT2G22795" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0005768 "endosome" evidence=IDA] [GO:0005802
"trans-Golgi network" evidence=IDA] GO:GO:0005794 EMBL:CP002685
GO:GO:0005768 GO:GO:0005802 IPI:IPI00534353 RefSeq:NP_850032.1
UniGene:At.45724 UniGene:At.74141 PRIDE:F4IKG5
EnsemblPlants:AT2G22795.1 GeneID:816810 KEGG:ath:AT2G22795
OMA:ESTCRKT Uniprot:F4IKG5
Length = 734
Score = 127 (49.8 bits), Expect = 0.00019, P = 0.00019
Identities = 95/440 (21%), Positives = 175/440 (39%)
Query: 221 DISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFI 280
D S+ ++KD + + R + K E+ K + E + K +SG I
Sbjct: 278 DESEESKEKDIDEKAN-IEEARENNYKGDDASSEVVHESEEKTSESENSEKVEDKSG--I 334
Query: 281 SLPEGEEGF----LPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISRGQVTLTMKKEDD 336
E E+ LP + ++ + ++ S + S+ ++ S G+ +M+K +
Sbjct: 335 KTEEVEDSVIKSVLPNTTDNGESSSDEKSTGSSSGHESDSLEGIK-SEGE---SMEKNEL 390
Query: 337 VGSNLQLTQG---VIHAATNPFVLAFRSNKDISSFLDERDKSATAAKKSEKPTPIEIGG- 392
+ + G V +T + ++SS + + K + K E + E
Sbjct: 391 LEKEFNDSNGESSVTGKSTGSGDGGSQETSEVSSQEESKGKESETKDKEESSSQEESKDR 450
Query: 393 --EVSQMEAGSSIPKVQDQPTSSDDGMASVPSAVGETVEDHEAPSKEKGELADIANRNDD 450
E + E SS + D+ T + + V S+ E ED E E L + + D+
Sbjct: 451 ETETKEKEESSSQEETMDKETEAKE---KVESSSQEKNEDKETEKIESSFLEETKEKEDE 507
Query: 451 PQNVMSGSSETLDGALQTIEKETEETTLNQTIEETPSTDVSGELAE-QALSTDGP-KAGE 508
+ SS+ +T K+ EE++ + ++ + + E A Q S + + E
Sbjct: 508 TKEKEESSSQEKTEEKETETKDNEESSSQEETKDKENEKIEKEEASSQEESKENETETKE 567
Query: 509 FTESQT-EDTIAKDEVQILTP--AXXXXXXXXXXXALAPEGSVSTE----KQIIGEAAST 561
ES + E+T K+ +I A + E S S E K+ +
Sbjct: 568 KEESSSQEETKEKENEKIEKEESAPQEETKEKENEKIEKEESASQEETKEKETETKEKEE 627
Query: 562 NLSGEIAEQVSVSDSPKDEEVVQNQ--TDDVIAKDEEQIQTPTTESEIPSAGSLKEKESG 619
+ S E E V+ ++S K E+V +N+ TD+ ++ ++ TE + S KE ES
Sbjct: 628 SSSNESQENVN-TESEKKEQVEENEKKTDEDTSESSKENSVSDTEQKQSEETSEKE-ES- 684
Query: 620 PIPDKNGSITSSGEEPDVSS 639
+KNG + E+ D SS
Sbjct: 685 ---NKNGETEVTQEQSDSSS 701
Score = 122 (48.0 bits), Expect = 0.00065, P = 0.00065
Identities = 97/452 (21%), Positives = 178/452 (39%)
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
+E E G + + S+++++KD +G T S K G + E++ K
Sbjct: 209 VEERKENGGTEENEKSGSEESEVEEKKD---NGG----TEESREKSGTEESEVEEKKD-N 260
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESD-DGFANMMGGSSLQV-GQEVSVRVL 320
G E V+ + + E EE S+E D D AN+ G + S V+
Sbjct: 261 GSSEESEVEEKKENRG---IDESEE-----SKEKDIDEKANIEEARENNYKGDDASSEVV 312
Query: 321 RISRGQVTLTMKKEDDVGSNLQLTQGVIHAATNPFVLAFRSNKDISSFLDERDKSATAAK 380
S + + + E + T+ V + + N + SS DE+ +++
Sbjct: 313 HESEEKTSESENSEKVEDKSGIKTEEVEDSVIKSVLPNTTDNGESSS--DEKSTGSSSGH 370
Query: 381 KSEKPTPIEIGGEVSQMEAGSSIPK-VQDQPTSSDDGMASVPSAVGETVEDHEAPSKE-- 437
+S+ I+ GE ME + K D S S S G + E E S+E
Sbjct: 371 ESDSLEGIKSEGE--SMEKNELLEKEFNDSNGESSVTGKSTGSGDGGSQETSEVSSQEES 428
Query: 438 KGELADIANRNDDPQNVMSGSSETLDGALQTIEKE---TEETTLNQTIEETPSTDVSGEL 494
KG+ ++ ++ + S E+ D +T EKE ++E T+++ E + S +
Sbjct: 429 KGKESETKDKEES-----SSQEESKDRETETKEKEESSSQEETMDKETEAKEKVESSSQE 483
Query: 495 AEQALSTDGPKAG--EFTESQTEDTIAKDEV--QILTPAXXXXXXXXXXXALAPEGSVST 550
+ T+ ++ E T+ + ++T K+E Q T + E
Sbjct: 484 KNEDKETEKIESSFLEETKEKEDETKEKEESSSQEKTEEKETETKDNEESSSQEETKDKE 543
Query: 551 EKQIIGEAASTNLSGEIAEQVSVSDSPKDEEVVQNQTDDVIAKDEEQIQTPTTESEIPSA 610
++I E AS S E +++ K+E Q +T + K+ E+I+ E P
Sbjct: 544 NEKIEKEEAS---SQEESKENETETKEKEESSSQEETKE---KENEKIEK---EESAPQE 594
Query: 611 GSLKEKESGPIPDKNGSITSSGEEPDVSSSQK 642
+ KEKE+ I + + +E + + +K
Sbjct: 595 ET-KEKENEKIEKEESASQEETKEKETETKEK 625
>RGD|1304762 [details] [associations]
symbol:Iws1 "IWS1 homolog (S. cerevisiae)" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR017923 Pfam:PF08711 PROSITE:PS51319
RGD:1304762 GO:GO:0005634 GO:GO:0003677 GO:GO:0006351
Gene3D:1.20.930.10 eggNOG:COG5139 GeneTree:ENSGT00700000104555
CTD:55677 HOVERGEN:HBG081811 OrthoDB:EOG46WZ7T HOGENOM:HOG000113120
EMBL:BC104700 IPI:IPI00363456 RefSeq:NP_001030090.1
UniGene:Rn.206133 STRING:Q3SWT4 PhosphoSite:Q3SWT4 PRIDE:Q3SWT4
Ensembl:ENSRNOT00000061011 GeneID:291705 KEGG:rno:291705
UCSC:RGD:1304762 NextBio:633054 ArrayExpress:Q3SWT4
Genevestigator:Q3SWT4 GermOnline:ENSRNOG00000014630 Uniprot:Q3SWT4
Length = 764
Score = 127 (49.8 bits), Expect = 0.00020, P = 0.00020
Identities = 68/259 (26%), Positives = 110/259 (42%)
Query: 396 QMEAGSSIPKVQDQPTSSDDGMASVPS--AVGET--VEDH---EAPSKEKGELADIAN-- 446
Q + G + P VQD+ S DG V + +T V+ H E +E G L I N
Sbjct: 10 QSDDGGATP-VQDERDSGSDGEDDVNEQHSGSDTGSVDRHSENETSDREDG-LTKIHNGT 67
Query: 447 --RNDDPQNVMSGSSETLDGALQTIEKETEETTLNQTIEETPSTDVSGELAEQALSTDGP 504
ND+P NV + SE+ + + + + + ++ E+P++D E Q +D
Sbjct: 68 DSENDEPSNVHASDSES-----EELHRPKDSDSESEEHAESPASDSENEAVHQQ-GSDSE 121
Query: 505 KAGEFTESQTEDTIAKDEVQILTPAXXXXXXXXXXXALAPEGSVSTEKQIIGEAASTNLS 564
K E D+ K+E + L P+GS S + AS + S
Sbjct: 122 KE-ELLNGHASDS-EKEEGR-----KHAASDSETEDTLQPQGSESDSEDPPRPQASDSES 174
Query: 565 GEIAEQVSVSDSPKDEEVVQNQTDDVIAKDEEQIQTPTTESE-IPSAG-SLKEKESGPIP 622
E + +SDS + EE+ + + D ++D + Q +ESE +P S E E P P
Sbjct: 175 EE-PPKPRISDS-ESEELPKPRISDSESEDPPRPQVSDSESEELPKPRVSDSESEDPPRP 232
Query: 623 DKNGSITSSGEEPDVSSSQ 641
+ S + +P VS S+
Sbjct: 233 QASDSESEELPKPRVSDSE 251
>UNIPROTKB|Q3SWT4 [details] [associations]
symbol:Iws1 "Protein IWS1 homolog" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR017923
Pfam:PF08711 PROSITE:PS51319 RGD:1304762 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 Gene3D:1.20.930.10 eggNOG:COG5139
GeneTree:ENSGT00700000104555 CTD:55677 HOVERGEN:HBG081811
OrthoDB:EOG46WZ7T HOGENOM:HOG000113120 EMBL:BC104700
IPI:IPI00363456 RefSeq:NP_001030090.1 UniGene:Rn.206133
STRING:Q3SWT4 PhosphoSite:Q3SWT4 PRIDE:Q3SWT4
Ensembl:ENSRNOT00000061011 GeneID:291705 KEGG:rno:291705
UCSC:RGD:1304762 NextBio:633054 ArrayExpress:Q3SWT4
Genevestigator:Q3SWT4 GermOnline:ENSRNOG00000014630 Uniprot:Q3SWT4
Length = 764
Score = 127 (49.8 bits), Expect = 0.00020, P = 0.00020
Identities = 68/259 (26%), Positives = 110/259 (42%)
Query: 396 QMEAGSSIPKVQDQPTSSDDGMASVPS--AVGET--VEDH---EAPSKEKGELADIAN-- 446
Q + G + P VQD+ S DG V + +T V+ H E +E G L I N
Sbjct: 10 QSDDGGATP-VQDERDSGSDGEDDVNEQHSGSDTGSVDRHSENETSDREDG-LTKIHNGT 67
Query: 447 --RNDDPQNVMSGSSETLDGALQTIEKETEETTLNQTIEETPSTDVSGELAEQALSTDGP 504
ND+P NV + SE+ + + + + + ++ E+P++D E Q +D
Sbjct: 68 DSENDEPSNVHASDSES-----EELHRPKDSDSESEEHAESPASDSENEAVHQQ-GSDSE 121
Query: 505 KAGEFTESQTEDTIAKDEVQILTPAXXXXXXXXXXXALAPEGSVSTEKQIIGEAASTNLS 564
K E D+ K+E + L P+GS S + AS + S
Sbjct: 122 KE-ELLNGHASDS-EKEEGR-----KHAASDSETEDTLQPQGSESDSEDPPRPQASDSES 174
Query: 565 GEIAEQVSVSDSPKDEEVVQNQTDDVIAKDEEQIQTPTTESE-IPSAG-SLKEKESGPIP 622
E + +SDS + EE+ + + D ++D + Q +ESE +P S E E P P
Sbjct: 175 EE-PPKPRISDS-ESEELPKPRISDSESEDPPRPQVSDSESEELPKPRVSDSESEDPPRP 232
Query: 623 DKNGSITSSGEEPDVSSSQ 641
+ S + +P VS S+
Sbjct: 233 QASDSESEELPKPRVSDSE 251
>TAIR|locus:2088644 [details] [associations]
symbol:RRP5 "Ribosomal RNA Processing 5" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0006606 "protein import into nucleus" evidence=RCA] [GO:0006364
"rRNA processing" evidence=IMP] [GO:0009553 "embryo sac
development" evidence=IMP] InterPro:IPR003029 InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 SMART:SM00386 GO:GO:0005886 EMBL:CP002686
GO:GO:0005730 GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 KO:K14792 OMA:LHLADIY
IPI:IPI00527296 RefSeq:NP_187803.4 UniGene:At.50175 PRIDE:F4J8K6
EnsemblPlants:AT3G11964.1 GeneID:820370 KEGG:ath:AT3G11964
Uniprot:F4J8K6
Length = 1896
Score = 131 (51.2 bits), Expect = 0.00021, P = 0.00021
Identities = 31/87 (35%), Positives = 52/87 (59%)
Query: 134 KSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAF-TDGLVHVSRLSDNFVKDVGSIV 192
KSE +K L G +G++R ++PFG FID GL H+S+LSD+ +++V +
Sbjct: 1423 KSESYDLKK--LHVGDMISGRIRRVEPFGLFIDIDQTGMVGLCHISQLSDDRMENVQARY 1480
Query: 193 SVGQEVKVRLIEANAETGRISLTMRES 219
G+ V+ ++++ + E RISL M+ S
Sbjct: 1481 KAGESVRAKILKLDEEKKRISLGMKSS 1507
Score = 129 (50.5 bits), Expect = 0.00035, P = 0.00035
Identities = 57/215 (26%), Positives = 94/215 (43%)
Query: 126 SRRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDF-GAFTDGLVHVSRLSDNF 184
S+ S E+P N+ L P + G V ++ G F+ F G T G S+ D+
Sbjct: 706 SKYSLIKLAEELPSDFNQ-LQPNSVVHGYVCNLIENGCFVRFLGRLT-GFAPRSKAIDDP 763
Query: 185 VKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDIS-KLQQQKDATASGDKVRTTRR 243
DV VGQ V+ +++ N E RI+L++++S S ++ +K+ +
Sbjct: 764 KADVSESFFVGQSVRANIVDVNQEKSRITLSLKQSSCASVDASFVQEYFLMDEKISDLQS 823
Query: 244 STSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEE--GFLPTSEESDDGFA 301
S K D KF G ++GT++ G ++ GF+P
Sbjct: 824 SDIT---KSDCSWVEKFSIGSLIKGTIQEQNDLGVVVNFDNINNVLGFIPQHH------- 873
Query: 302 NMMGGSSLQVGQEVSVRVLRISRGQ--VTLTMKKE 334
MGG++L G V+ VL ISR + V L+++ E
Sbjct: 874 --MGGATLVPGSVVNAVVLDISRAERLVDLSLRPE 906
>FB|FBgn0039470 [details] [associations]
symbol:CG6296 species:7227 "Drosophila melanogaster"
[GO:0004806 "triglyceride lipase activity" evidence=ISS]
[GO:0008970 "phosphatidylcholine 1-acylhydrolase activity"
evidence=IEA] [GO:0006629 "lipid metabolic process" evidence=IEA]
InterPro:IPR000734 InterPro:IPR002334 PRINTS:PR00821 PRINTS:PR00825
EMBL:AE014297 GO:GO:0005576 GO:GO:0006629 GO:GO:0050253
GO:GO:0004806 GO:GO:0008970 GO:GO:0052740 GO:GO:0052739
InterPro:IPR013818 PANTHER:PTHR11610 Pfam:PF00151 HSSP:P54318
GeneTree:ENSGT00560000076769 eggNOG:NOG245830 EMBL:AY118607
RefSeq:NP_651520.1 UniGene:Dm.11125 SMR:Q9VB94 MINT:MINT-280657
EnsemblMetazoa:FBtr0085078 GeneID:43246 KEGG:dme:Dmel_CG6296
UCSC:CG6296-RA FlyBase:FBgn0039470 InParanoid:Q9VB94 OMA:APEDNET
OrthoDB:EOG4QJQ3X ChiTaRS:CG6296 GenomeRNAi:43246 NextBio:832935
Uniprot:Q9VB94
Length = 676
Score = 126 (49.4 bits), Expect = 0.00022, P = 0.00022
Identities = 61/270 (22%), Positives = 113/270 (41%)
Query: 384 KPTPIEIGGEVSQMEAGSSIPKVQDQPTSSDDGMASVPSAVGETVEDHEAPSKEKGELAD 443
K +P +G S EA + P++ +D + S T + E+ ++E E D
Sbjct: 337 KESPYGLGELNSGGEATTGTPEITSTTVDGEDESTTEVSTSTTTDKPEESTTEEPEE--D 394
Query: 444 IANRNDDPQNVMSGSSETLDGALQTIEKETEETTLNQTIEETPSTDVSG-ELA---EQAL 499
+ N P+ S ++E + + T E+ + TT E T S+ G E + E
Sbjct: 395 -STTNGKPEE-SSTTTEQPEDSTTTTEEPIDSTTEAPEDESTTSSPTDGGEQSTTEEPET 452
Query: 500 STDGPKAGEFTESQTEDTIAKDEVQILTPAXXXXXXXXXXXALAPEGSVSTEKQIIGEAA 559
+T+ P+ + TED+ K+ + T +PE +T GE
Sbjct: 453 TTEKPEETSTSPIDTEDSTTKEPEDVSTTPKESEESTTS----SPEDDDTTSAP--GEDD 506
Query: 560 STNLSGEIAEQVSVSDSPKDEEVVQNQTDDVIAKDEEQIQT-------PTTESEIP--SA 610
T + E+ + ++ P++ + DD ++ E+ T P+T +E P S
Sbjct: 507 DTTAAPGGDEEETTTEDPEETTTSPSDADDSTTEEPEEDTTTTKKPVEPSTTTEEPEDST 566
Query: 611 GSLKEKESGPIPDKNGSITSSGEEPDVSSS 640
+ E+ + PDK S T++ EP+V+++
Sbjct: 567 TEVPEESTTEEPDKETSTTNA--EPEVTTT 594
>UNIPROTKB|Q5SSG8 [details] [associations]
symbol:MUC21 "Mucin-21" species:9606 "Homo sapiens"
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0005796 "Golgi lumen"
evidence=TAS] [GO:0016266 "O-glycan processing" evidence=TAS]
[GO:0043687 "post-translational protein modification" evidence=TAS]
[GO:0044267 "cellular protein metabolic process" evidence=TAS]
Reactome:REACT_17015 GO:GO:0016021 GO:GO:0005886 EMBL:CH471081
GO:GO:0043687 GO:GO:0005796 GO:GO:0016266 EMBL:CR759747
EMBL:AK298642 EMBL:AB242595 EMBL:HM596784 EMBL:AY358415
EMBL:AL663093 EMBL:AL669830 EMBL:CR759772 EMBL:CT009610
EMBL:CR759964 EMBL:BC105735 EMBL:BC105736 EMBL:BC105737
EMBL:BC107478 IPI:IPI00647489 IPI:IPI00895899 IPI:IPI00895926
RefSeq:NP_001010909.2 UniGene:Hs.448277 ProteinModelPortal:Q5SSG8
STRING:Q5SSG8 DMDM:296439229 PaxDb:Q5SSG8 PRIDE:Q5SSG8
Ensembl:ENST00000376296 Ensembl:ENST00000486149 GeneID:394263
KEGG:hsa:394263 UCSC:uc003nsh.2 CTD:394263 GeneCards:GC06P030951
GeneCards:GC06Pi30959 GeneCards:GC06Pj30941 GeneCards:GC06Pk30942
H-InvDB:HIX0058199 H-InvDB:HIX0166716 HGNC:HGNC:21661
neXtProt:NX_Q5SSG8 PharmGKB:PA162396305 eggNOG:NOG149353
InParanoid:Q5SSG8 OMA:TNTADSN GenomeRNAi:394263 NextBio:105412
ArrayExpress:Q5SSG8 Bgee:Q5SSG8 CleanEx:HS_MUC21
Genevestigator:Q5SSG8 Uniprot:Q5SSG8
Length = 566
Score = 125 (49.1 bits), Expect = 0.00022, P = 0.00022
Identities = 80/369 (21%), Positives = 124/369 (33%)
Query: 292 TSEESDDGFANMMGGSSLQVGQEVSVRVLRISRGQVTLTMKKEDDVG----SNLQLTQGV 347
TS ++ G + + G+S SV +S ++ + + V S T
Sbjct: 27 TSTSANTGSSVISSGASTATNSGSSVTSSGVSTATISGSSVTSNGVSIVTNSEFHTTSSG 86
Query: 348 IHAATNPFVLAFRSNKDISSFLDERDKS--ATAAKKSEKPTPIE-----IGGEVSQMEAG 400
I ATN S I++ + S A+ A SE TP + S +G
Sbjct: 87 ISTATNSEFSTVSSGISIATNSESSTTSSGASTATNSESSTPSSGASTATNSDSSTTSSG 146
Query: 401 SSIPKVQDQPTSSDDGMASVPSAVGETVEDHEAPSKEKGELADIANRNDDPQNVMSGSSE 460
+S D T+S + + S T A + E + +++R N S SS
Sbjct: 147 ASTATNSDSSTTSSEASTATNSESSTTSSG--ASTATNSESSTVSSRASTATN--SESST 202
Query: 461 TLDGALQTIEKETEETT--LNQTIEETPSTDVSGELAEQALSTDGPKAGEFTESQTEDTI 518
T GA E+ T+ ST SG + P +G T + +E +
Sbjct: 203 TSSGASTATNSESRTTSNGAGTATNSESSTTSSGASTATNSESSTPSSGAGTATNSESST 262
Query: 519 AKDEVQILTPAXXXXXXXXXXXALAPEGSV--STEKQIIGEAASTNLSGEIAEQVSVSDS 576
T + E S S +ST SG A + SDS
Sbjct: 263 TSSGAGTATNSESSTVSSGISTVTNSESSTPSSGANTATNSESSTTSSG--ANTATNSDS 320
Query: 577 PKDEEVVQNQTDDVIAKDEEQIQTPT-TESEIPSAGSLKEKESGPIPDKNGSITSSGEEP 635
T+ + T T +ES S+G+ SG +G+ T++ E
Sbjct: 321 STTSSGASTATNSESSTTSSGASTATNSESSTTSSGASTATNSGSSTTSSGTSTATNSES 380
Query: 636 D-VSSSQKT 643
VSS T
Sbjct: 381 STVSSGAST 389
>TIGR_CMR|CBU_0852 [details] [associations]
symbol:CBU_0852 "polyribonucleotide
nucleotidyltransferase" species:227377 "Coxiella burnetii RSA 493"
[GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
evidence=ISS] [GO:0006401 "RNA catabolic process" evidence=ISS]
HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
GO:GO:0006396 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 HSSP:P05055 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
HOGENOM:HOG000218326 ProtClustDB:PRK11824 RefSeq:NP_819872.1
ProteinModelPortal:Q83D87 SMR:Q83D87 PRIDE:Q83D87 GeneID:1208745
KEGG:cbu:CBU_0852 PATRIC:17930401
BioCyc:CBUR227377:GJ7S-847-MONOMER Uniprot:Q83D87
Length = 696
Score = 126 (49.4 bits), Expect = 0.00022, P = 0.00022
Identities = 26/73 (35%), Positives = 45/73 (61%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G + G V I FGAF+ T GLVH+S+++ V++V + GQ ++V++IE +
Sbjct: 625 GKVYEGTVVKITDFGAFVQILPNTQGLVHISQIAQERVENVRDYLEEGQVIRVKVIEIDR 684
Query: 208 ETGRISLTMRESD 220
+ GR+ L+M++ D
Sbjct: 685 Q-GRVRLSMKQID 696
>TIGR_CMR|GSU_1593 [details] [associations]
symbol:GSU_1593 "polyribonucleotide
nucleotidyltransferase" species:243231 "Geobacter sulfurreducens
PCA" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
[GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0006402 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185
HOGENOM:HOG000218327 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
ProtClustDB:PRK11824 RefSeq:NP_952644.4 ProteinModelPortal:Q74CS9
GeneID:2687125 KEGG:gsu:GSU1593 PATRIC:22026031
BioCyc:GSUL243231:GH27-1537-MONOMER Uniprot:Q74CS9
Length = 697
Score = 126 (49.4 bits), Expect = 0.00022, P = 0.00022
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G + G V+ + FGAF++ TDGLVH+S L VK+V +++ G +V V+ I +
Sbjct: 620 GKLYMGTVKKVMDFGAFVEIFPGTDGLVHISELDTERVKNVTDVLNEGDKVLVKCIGIDK 679
Query: 208 ETGRISLTMRES 219
+ G+I L+ +E+
Sbjct: 680 Q-GKIKLSRKEA 690
>UNIPROTKB|E9PTW3 [details] [associations]
symbol:Dspp "Dentin sialophosphoprotein" species:10116
"Rattus norvegicus" [GO:0071460 "cellular response to cell-matrix
adhesion" evidence=IEA] RGD:2525 GeneTree:ENSGT00550000074777
GO:GO:0071460 IPI:IPI00198253 Ensembl:ENSRNOT00000002946
OMA:DESSIAV ArrayExpress:E9PTW3 Uniprot:E9PTW3
Length = 952
Score = 127 (49.8 bits), Expect = 0.00026, P = 0.00026
Identities = 77/452 (17%), Positives = 168/452 (37%)
Query: 195 GQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDE 254
GQ L + TG S +ES KL KD+ + +R++ K G E
Sbjct: 356 GQSQNQGLETEGSSTGNKSSITKES---GKLSGSKDSNGHHG-MELDKRNSPKQGAA--E 409
Query: 255 MKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQE 314
T G G+ N ++ E +G P S + +G +S +
Sbjct: 410 KSDTHNNMGHSRIGSSSNSDGHDSYDFDDESMQGDDPNSSDESNGSDGSDDANSESANEN 469
Query: 315 VSVRVLRISRGQVTLTMKKEDDVGSNLQLTQGVIHAATNPFVLAFR-SNKDISSFLDERD 373
+ G + T + D G + G ++ + SN D S +++D
Sbjct: 470 GN-------HGDASYTSDESSDNGGDSDSYAGEDDSSDDTSDTDDSDSNGDDDSESEDKD 522
Query: 374 KSATAAKKSEKPTPIEIGGEVSQMEAGSSIPKVQDQPTSSDDGMASVPSAVGETVEDHEA 433
+S + ++ + + S ++ S D SSD +S S ++ + ++
Sbjct: 523 ESDNSNHDNDSDSESKSDSSDSDSDSSDSSDS-SDSSDSSDSSDSSESSDSSDSSDSSDS 581
Query: 434 P-SKEKGELADIANRNDDPQNVMSGSSETLDGALQTIEKETEETTLNQTIEETPSTDVSG 492
S + + +D ++ +D N S SS++ D + + E+ +++ + ++ + S
Sbjct: 582 SDSSDSSDSSDSSDSSDSDSNDSSDSSDSSDSSDSSDSSESSDSSDSSDSSDSSESSESS 641
Query: 493 ELAEQALSTDGPKAGEFTES-QTEDTIAKDEVQILTPAXXXXXXXXXXXALAPEGSVSTE 551
E ++ + S+D + + +ES ++ D+ + + + + + S S++
Sbjct: 642 ESSDSSDSSDSSDSSDSSESSESSDSSDSSDSSDSDSSDSSDSSDSSDSSDSSDSSDSSD 701
Query: 552 KQIIGEAASTNLSGEIAEQVSVSDSPKDEEVVQNQTDDVIAKDEEQIQTPTTESEIPSAG 611
+++ ++ S + S S D + +D + + + + + S+
Sbjct: 702 SSDSSDSSDSDSSDSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSDSSDSSDSSDSSDSSD 761
Query: 612 SLKEKESGPIPDKNGSITSSGEEPDVSSSQKT 643
S +S D + S SS SS +
Sbjct: 762 SSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSS 793
>TAIR|locus:2183750 [details] [associations]
symbol:AT5G10950 "AT5G10950" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005829 "cytosol" evidence=IDA] [GO:0007346
"regulation of mitotic cell cycle" evidence=RCA] GO:GO:0005829
EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:AL365234 EMBL:AY063955
EMBL:AY096725 IPI:IPI00525626 PIR:T50804 RefSeq:NP_196656.1
UniGene:At.27129 ProteinModelPortal:Q9LEU5 PaxDb:Q9LEU5
PRIDE:Q9LEU5 EnsemblPlants:AT5G10950.1 GeneID:830962
KEGG:ath:AT5G10950 TAIR:At5g10950 eggNOG:NOG327778
HOGENOM:HOG000152996 InParanoid:Q9LEU5 OMA:KKERWEL
ProtClustDB:CLSN2916340 ArrayExpress:Q9LEU5 Genevestigator:Q9LEU5
Uniprot:Q9LEU5
Length = 395
Score = 122 (48.0 bits), Expect = 0.00026, P = 0.00026
Identities = 55/242 (22%), Positives = 99/242 (40%)
Query: 407 QDQPTSSDDGMASVPSAVGETVEDHEAPSKEKGELADIANRNDDPQNVMSGSSETLDGAL 466
+D S D ++ + GE+ E P K KG+ A + R D+ M + +D +
Sbjct: 91 EDDAESESDEISLQEESAGESSEGTPEPPKGKGK-ASLKGRTDE---AMPKKKQKIDSSS 146
Query: 467 QTIEKETEETTLNQTIEETPST-DVSGELAEQA--LSTDGPKAGEFTESQTEDTIAKDEV 523
++ KE E+ E+ D+ G++ A +S G + +T K ++
Sbjct: 147 KSKAKEVEKKASKPETEKNGKMGDIGGKIVAAASRMSERFRSKGNVDQKETSKASKKPKM 206
Query: 524 QILTPAXXXXXXXXXXXALAPEGSVSTE--KQIIGEAASTNLSGEIAEQVSVSDSPKDEE 581
+ S+E K + ++ ++N + E+AE S D PK +
Sbjct: 207 SSKLTKRKHTDDQDEDEEAGDDIDTSSEEAKPKVLKSCNSN-ADEVAENSSDEDEPKVLK 265
Query: 582 VVQNQTDDVIAKDEEQIQTPTTESEIPSAGSLKEKESGPIPDKNGSITSSGEEPDVSSSQ 641
++ D +DEE+ +T E+E P A L S NG SS +E +++ S+
Sbjct: 266 TNNSKADK--DEDEEENETSDDEAE-PKALKLSNSNSD-----NGENNSSDDEKEITISK 317
Query: 642 KT 643
T
Sbjct: 318 IT 319
>CGD|CAL0004905 [details] [associations]
symbol:IFF6 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0009986 "cell surface"
evidence=ISS;IDA] [GO:0009277 "fungal-type cell wall" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005937 "mating
projection" evidence=IEA] [GO:0000753 "cell morphogenesis involved
in conjugation with cellular fusion" evidence=IEA] CGD:CAL0004905
GO:GO:0009986 GO:GO:0009277 EMBL:AACQ01000107 InterPro:IPR021031
Pfam:PF11765 RefSeq:XP_714246.1 GeneID:3644087 KEGG:cal:CaO19.4072
Uniprot:Q59XL0
Length = 1086
Score = 137 (53.3 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 57/268 (21%), Positives = 106/268 (39%)
Query: 373 DKSATAAKKSEKPTPIEIGGEVSQMEAGSSIPKVQDQPTSSDDGMASV--PSAVGETVED 430
+ S++ +E+P+ G SQ E+ SS +P+SS +S PS+ E+
Sbjct: 440 EASSSTESSTEEPSSSTEGPSSSQ-ESSSSEESSTQEPSSSTKESSSTEGPSSTEES-SS 497
Query: 431 HEAPSKEKGELADI--ANRNDDPQNVMSGSSETLDGALQTIEKETEETTLNQTIEETPST 488
E PS DI A+ D+ + +G S T D + + E +T T + T ++ +T
Sbjct: 498 TEGPSSSTDSSTDITSASSTDEQSSSGTGQSSTEDEPIDSTESDTSSATDSSTATDSSAT 557
Query: 489 --DVSGELAEQALSTDGPKAGEFTESQTE-DTIAKDEVQILTPAXXXXXXXXXXXALAPE 545
D + E + + +TD T S TE +T D A +
Sbjct: 558 NTDTNSESTDSSTATDTSSTDSNTASSTETNTDVTDSSTDSNTGATESSTATDTNTDATD 617
Query: 546 GSVSTEKQIIGEAASTNLSGEIAEQVSVSDSPKDEEVVQNQTDDVIAKDEEQIQTPT-TE 604
S +E + +T+ + E + S++ E T+ + + T T
Sbjct: 618 SSTVSETGATDSSTATDTNTGATESSTDSNTGATESSTATDTNTSATNTDTNTGSNTATN 677
Query: 605 SEIPSAGSLKEKESGPIPDKNGSITSSG 632
++ +A E+ + +G+ T++G
Sbjct: 678 TDDNTATDTSSTETNTATNTDGTETNTG 705
Score = 39 (18.8 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 611 GSLKEKESGPIPDKNGSITSSGEEPDVSSS 640
GS SG D NG ITSS +P S+S
Sbjct: 1018 GSGSGSGSGSGQD-NGIITSSIGQPGSSTS 1046
>UNIPROTKB|Q59XL0 [details] [associations]
symbol:IFF6 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0003674
"molecular_function" evidence=ND] [GO:0009277 "fungal-type cell
wall" evidence=IDA] [GO:0009986 "cell surface" evidence=ISS;IDA]
CGD:CAL0004905 GO:GO:0009986 GO:GO:0009277 EMBL:AACQ01000107
InterPro:IPR021031 Pfam:PF11765 RefSeq:XP_714246.1 GeneID:3644087
KEGG:cal:CaO19.4072 Uniprot:Q59XL0
Length = 1086
Score = 137 (53.3 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 57/268 (21%), Positives = 106/268 (39%)
Query: 373 DKSATAAKKSEKPTPIEIGGEVSQMEAGSSIPKVQDQPTSSDDGMASV--PSAVGETVED 430
+ S++ +E+P+ G SQ E+ SS +P+SS +S PS+ E+
Sbjct: 440 EASSSTESSTEEPSSSTEGPSSSQ-ESSSSEESSTQEPSSSTKESSSTEGPSSTEES-SS 497
Query: 431 HEAPSKEKGELADI--ANRNDDPQNVMSGSSETLDGALQTIEKETEETTLNQTIEETPST 488
E PS DI A+ D+ + +G S T D + + E +T T + T ++ +T
Sbjct: 498 TEGPSSSTDSSTDITSASSTDEQSSSGTGQSSTEDEPIDSTESDTSSATDSSTATDSSAT 557
Query: 489 --DVSGELAEQALSTDGPKAGEFTESQTE-DTIAKDEVQILTPAXXXXXXXXXXXALAPE 545
D + E + + +TD T S TE +T D A +
Sbjct: 558 NTDTNSESTDSSTATDTSSTDSNTASSTETNTDVTDSSTDSNTGATESSTATDTNTDATD 617
Query: 546 GSVSTEKQIIGEAASTNLSGEIAEQVSVSDSPKDEEVVQNQTDDVIAKDEEQIQTPT-TE 604
S +E + +T+ + E + S++ E T+ + + T T
Sbjct: 618 SSTVSETGATDSSTATDTNTGATESSTDSNTGATESSTATDTNTSATNTDTNTGSNTATN 677
Query: 605 SEIPSAGSLKEKESGPIPDKNGSITSSG 632
++ +A E+ + +G+ T++G
Sbjct: 678 TDDNTATDTSSTETNTATNTDGTETNTG 705
Score = 39 (18.8 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 611 GSLKEKESGPIPDKNGSITSSGEEPDVSSS 640
GS SG D NG ITSS +P S+S
Sbjct: 1018 GSGSGSGSGSGQD-NGIITSSIGQPGSSTS 1046
>UNIPROTKB|Q86VQ3 [details] [associations]
symbol:TXNDC2 "Thioredoxin domain-containing protein 2"
species:9606 "Homo sapiens" [GO:0006662 "glycerol ether metabolic
process" evidence=IEA] [GO:0009055 "electron carrier activity"
evidence=IEA] [GO:0015035 "protein disulfide oxidoreductase
activity" evidence=IEA] [GO:0045735 "nutrient reservoir activity"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0001520 "outer dense fiber" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0045454 "cell redox homeostasis"
evidence=NAS] [GO:0004791 "thioredoxin-disulfide reductase
activity" evidence=ISS;IDA] [GO:0007283 "spermatogenesis"
evidence=NAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR001419 InterPro:IPR005746
InterPro:IPR013766 Pfam:PF00085 Pfam:PF03157 PROSITE:PS00194
GO:GO:0045735 GO:GO:0007275 GO:GO:0005737 GO:GO:0030154
GO:GO:0005730 GO:GO:0009055 Gene3D:3.40.30.10 InterPro:IPR012336
SUPFAM:SSF52833 GO:GO:0007283 GO:GO:0009434 GO:GO:0045454
PROSITE:PS51352 GO:GO:0015035 GO:GO:0001520 GO:GO:0006662
PANTHER:PTHR10438 eggNOG:COG0526 GO:GO:0004791 EMBL:AC006238
OrthoDB:EOG47PX7J EMBL:AF080095 EMBL:AK097656 EMBL:BC050132
EMBL:AL136742 IPI:IPI00410323 IPI:IPI00479021 RefSeq:NP_001091999.1
RefSeq:NP_115619.4 UniGene:Hs.98712 ProteinModelPortal:Q86VQ3
SMR:Q86VQ3 IntAct:Q86VQ3 STRING:Q86VQ3 PhosphoSite:Q86VQ3
DMDM:269849731 PaxDb:Q86VQ3 PRIDE:Q86VQ3 DNASU:84203
Ensembl:ENST00000306084 Ensembl:ENST00000357775 GeneID:84203
KEGG:hsa:84203 UCSC:uc002koh.4 CTD:84203 GeneCards:GC18P009875
HGNC:HGNC:16470 HPA:CAB016414 HPA:HPA018817 neXtProt:NX_Q86VQ3
PharmGKB:PA38147 HOGENOM:HOG000154719 HOVERGEN:HBG087115
InParanoid:Q86VQ3 OMA:GNIPKAS GenomeRNAi:84203 NextBio:73608
ArrayExpress:Q86VQ3 Bgee:Q86VQ3 CleanEx:HS_TXNDC2
Genevestigator:Q86VQ3 GermOnline:ENSG00000168454 Uniprot:Q86VQ3
Length = 553
Score = 124 (48.7 bits), Expect = 0.00027, P = 0.00027
Identities = 75/317 (23%), Positives = 125/317 (39%)
Query: 332 KKEDDVGSN---LQLTQGVIHAATNPFVLAFRSNKDISSFLDERDKSATAAKKSEKPTPI 388
K++D S+ +Q +G I A + + + + SS + K + K S KP
Sbjct: 100 KQDDSPKSSEETIQPKEGDIPKAPEETIQSKKEDLPKSSEKAIQPKESNIPKSSAKPIQP 159
Query: 389 EIGGEVSQMEAGSSIPKVQDQPTSSDDGMASVPSAVGETVEDHEAPSKEKGELADIANRN 448
++G +IPK +P+ +G +P A ET++ + + E A
Sbjct: 160 KLG----------NIPKASVKPSQPKEG--DIPKAPEETIQSKKEDLPKSSEEAIQPKEG 207
Query: 449 DDPQNVMSGSSETLDGALQTIEKETE--ETTLNQTIEETPSTDVSGELAEQALSTDGPKA 506
D P++ L +T K ++ E+ + ++ EET G++ + + PK
Sbjct: 208 DIPKSSAKPIQPKLGNIAKTSVKPSQPKESDIPKSPEETIQPK-EGDIPKSSAKPIQPKL 266
Query: 507 GEFTESQT------EDTIAKDEVQILTPAXXXXXXXXXXXALAPEGSV--STEKQIIGEA 558
G ++ E I+K + + P EG + S E+ I +
Sbjct: 267 GNIPKASVKPSQPKEGDISKSPEEAIQPKEGDLPKSLEEAIQPKEGDIPKSPEEAIQPKE 326
Query: 559 ASTNLSGEIAEQVSVSDSPKD-EEVVQNQTDDVIAKDEEQIQTPTTESEIPSAGSLKEKE 617
S E A Q D PK EE +Q + D+ EE IQ P E +IP + K+
Sbjct: 327 GDIPKSLEEAIQPKEGDIPKSPEETIQPKKGDIPKSPEEAIQ-PK-EGDIPKS----PKQ 380
Query: 618 SGPIPDKNGSITSSGEE 634
+ I K G I S EE
Sbjct: 381 A--IQPKEGDIPKSLEE 395
>FB|FBgn0260430 [details] [associations]
symbol:CG42525 species:7227 "Drosophila melanogaster"
[GO:0008061 "chitin binding" evidence=IEA] [GO:0006030 "chitin
metabolic process" evidence=IEA] [GO:0005576 "extracellular region"
evidence=IEA] InterPro:IPR002557 PROSITE:PS50940 GO:GO:0005576
EMBL:AE014296 GO:GO:0008061 SUPFAM:SSF57625 GO:GO:0006030
GeneTree:ENSGT00700000104746 RefSeq:NP_001163335.1 UniGene:Dm.34764
ProteinModelPortal:E1JIC1 EnsemblMetazoa:FBtr0300854 GeneID:8674097
KEGG:dme:Dmel_CG42525 FlyBase:FBgn0260430 OMA:ICAPMAS
PhylomeDB:E1JIC1 GenomeRNAi:8674097 Uniprot:E1JIC1
Length = 419
Score = 122 (48.0 bits), Expect = 0.00029, P = 0.00029
Identities = 49/200 (24%), Positives = 85/200 (42%)
Query: 450 DPQNVMSGSSETLDGALQTIEKETEETTLNQTIEETPSTDVSGELAEQALSTDGPKAGEF 509
+P V S+ T D + ET E+T T E T ST V+ L Q +TD +
Sbjct: 79 EPACVTVTSTATTDIVTDSSTLETTESTATTTAETTDST-VTEILTTQ-FTTDSTTSEFS 136
Query: 510 TESQTEDTIAKDEVQILTPAXXX-----XXXXXXXXALAPEGSV-STEKQIIGEAASTNL 563
T+S T+ T ++ + T + ++ E S ST +I E+++ +
Sbjct: 137 TDSSTDSTTSELTTESSTDSTTSEISTESSTDSTTSEISTESSTDSTTSEISTESSTDST 196
Query: 564 SGEIAEQVSVSDSPKDEEVVQNQTDDVIAKDEEQIQTPTTESEIPSAGSLKEKESGPIPD 623
+ EI+ + S +DS E ++ TD ++ + T +T SEI + S S +
Sbjct: 197 TSEISTESS-TDSTTSEISTESSTDSTTSEFSTESSTDSTTSEISTESSTHSTTSAISTE 255
Query: 624 KNGSITSSGEEPDVSSSQKT 643
+ T+S + S+ T
Sbjct: 256 SSTDSTTSAISTESSTDSTT 275
Score = 119 (46.9 bits), Expect = 0.00062, P = 0.00062
Identities = 55/232 (23%), Positives = 95/232 (40%)
Query: 411 TSSDDGMASVPSAVGETVEDHEAPSKEKGELADIANRN--DDPQNVMSGSSETLDGALQT 468
T S S S+ T + S ++I+ + D + +S S T D
Sbjct: 128 TDSTTSEFSTDSSTDSTTSELTTESSTDSTTSEISTESSTDSTTSEISTESST-DSTTSE 186
Query: 469 IEKETEETTLNQTIEETPSTD-VSGELAEQALSTDGPKAGEFTESQTEDTIAKDEVQILT 527
I E+ + I STD + E++ ++ STD + TES T+ T + +I T
Sbjct: 187 ISTESSTDSTTSEISTESSTDSTTSEISTES-STDSTTSEFSTESSTDSTTS----EIST 241
Query: 528 PAXXXXXXXXXXXALAPEGSV-STEKQIIGEAASTNLSGEIAEQVSVSDSPKDEEVVQNQ 586
+ A++ E S ST I E+++ + + EI+ + S +DS ++
Sbjct: 242 ESSTHSTTS----AISTESSTDSTTSAISTESSTDSTTSEISTESS-TDSTTSAISTESS 296
Query: 587 TDDVIAKDEEQIQTPTTESEIPSAGSLKEKESGPIPDKNGSITSSGEEPDVS 638
TD ++ T +T SE+ + S S D + S T++ EP S
Sbjct: 297 TDSTTSEVTTNSSTESTTSELTTDSSTDSTTSATTTDSSTSPTTT--EPSTS 346
>FB|FBgn0037836 [details] [associations]
symbol:CG14692 species:7227 "Drosophila melanogaster"
[GO:0008603 "cAMP-dependent protein kinase regulator activity"
evidence=IEA] [GO:0007165 "signal transduction" evidence=IEA]
[GO:0032027 "myosin light chain binding" evidence=RCA]
InterPro:IPR000048 InterPro:IPR003117 Pfam:PF00612 Pfam:PF02197
PROSITE:PS50096 SMART:SM00015 SMART:SM00394 EMBL:AE014297
GO:GO:0007165 GO:GO:0008603 eggNOG:NOG12793 SUPFAM:SSF47391
RefSeq:NP_650019.4 ProteinModelPortal:Q9VGW4 SMR:Q9VGW4
IntAct:Q9VGW4 MINT:MINT-328162 GeneID:41298 KEGG:dme:Dmel_CG14692
UCSC:CG14692-RB FlyBase:FBgn0037836 InParanoid:Q9VGW4
OrthoDB:EOG4B8GTZ GenomeRNAi:41298 NextBio:823185 Bgee:Q9VGW4
Uniprot:Q9VGW4
Length = 2743
Score = 131 (51.2 bits), Expect = 0.00032, P = 0.00032
Identities = 114/556 (20%), Positives = 229/556 (41%)
Query: 122 TLAESRRSRTARKSE-MP---PVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHV 177
TL R+ K E +P P +D + G+T ++ +P ++ L V
Sbjct: 746 TLELDRKPEIIPKVEDVPKTTPNTKDDEVSGSTEKLEMNKEEPLDETVELSNHEITLSKV 805
Query: 178 SR-LSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATAS-- 234
+ +S+N + + + S + VK + AE ++ +ES I +L+ K+
Sbjct: 806 LKTVSENKQERMEDLPSEDKIVKDST-SSLAEDSKMPEAKKESKSIDELETTKEVLEDII 864
Query: 235 GDKVRTTRRSTSKPGQKRDEMKTTKFVKG-QDLEGTVKNLTRSGAFISLPEGEE--GFLP 291
+ ++++ + ++ D+ ++ K ++L+ +K LT+ PE E G L
Sbjct: 865 HSETDLSKQNIKENVEETDKPQSDDSPKELENLKDKIKMLTQEEVTPIEPESLETKGLLS 924
Query: 292 TSEESDDGFANMMGGSSLQVGQEVSVRVLRISRGQVTLTMKKEDDVGSNLQLTQGVIHAA 351
T +++D ++ ++ + S V +T ++ D+ + L I +
Sbjct: 925 T-DKNDKN--SLFSKTNSEENNNESQNV-----DDIT----EKTDLKNEKHLLASHI-SV 971
Query: 352 TNPFVLAFRSNKDISSFLDERDKSATAAKKSEKPTPIEIGGEVSQMEAGSSIPKVQDQPT 411
T+ ++ R ++ + ++ R++ A+ S++ +++ GE+ Q++ + + PT
Sbjct: 972 TSSGDISIRESE--TKHVENREEMASTNLDSDQVENMKLEGEIGQLKTVFEQSEEKTSPT 1029
Query: 412 SSDDGMASVPSAVGETVEDHEAPSKEKGELADIANRNDDP---QNVMSGSSETLDGALQT 468
S+ A ED + K K L D A ND +N+ S E +
Sbjct: 1030 KSESLHA----------EDRKISGKSKESLED-AGENDRSTLLENLPSSEKENSTSLDEN 1078
Query: 469 IEKETEETTLNQTIEETPSTDVSGELAEQALSTDGPKAGEFTE---SQTEDTIAKDEVQI 525
E E T+L++ + + T+ S L E++ S++ K+ E S+ E + + DE
Sbjct: 1079 PLPEKESTSLDE--KPSSGTEKSTSLDEKS-SSEKEKSTSLDEKPSSEKEKSTSLDE--- 1132
Query: 526 LTPAXXXXXXXXXXXALAPEGSVST--EKQIIGEAASTNL----SGEIAEQVSVSDSPKD 579
TP+ +PE ++ EK G ST+L S E + S+ + P
Sbjct: 1133 -TPSSEKENSTSLDEKPSPEKESTSLDEKPSSGTEKSTSLDEKSSSEKEKSTSLDEKPSS 1191
Query: 580 EEVVQNQTDDVIAKDEEQ----IQTPTTESEI------PSAGSLKEK--ESGPIPDKNGS 627
E+ ++ + ++E ++ P+ E E PS+G+ K + P +K S
Sbjct: 1192 EKEKSTSLNERPSSEKENSTSLVENPSPEKESTSLDEKPSSGTEKSTSLDENPSSEKEKS 1251
Query: 628 ITSSGEEPDVSSSQKT 643
TS E P T
Sbjct: 1252 -TSLNERPSSEKENST 1266
>RGD|1304933 [details] [associations]
symbol:Pdcd11 "programmed cell death 11" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA;ISO] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
PROSITE:PS50293 SMART:SM00386 RGD:1304933 GO:GO:0005829
GO:GO:0005634 GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 CTD:22984 KO:K14792
OrthoDB:EOG4XKV63 GeneTree:ENSGT00390000012228 IPI:IPI00870468
RefSeq:NP_001101074.2 UniGene:Rn.136636 ProteinModelPortal:D3ZNI3
Ensembl:ENSRNOT00000027512 GeneID:309458 KEGG:rno:309458
NextBio:660838 ArrayExpress:D3ZNI3 Uniprot:D3ZNI3
Length = 1876
Score = 113 (44.8 bits), Expect = 0.00033, Sum P(3) = 0.00033
Identities = 29/95 (30%), Positives = 52/95 (54%)
Query: 133 RKSEM--PPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGS 190
RKS + P ++ +D+ G GKV +++PFG + G GLV L+D +K+
Sbjct: 436 RKSIIAAPFLRYQDIKTGTIVKGKVLALKPFGMLVKVGEQMRGLVPSMHLADIMMKNPEK 495
Query: 191 IVSVGQEVKVRLIEANAETGRISLTMRESDDISKL 225
+ G EVK R++ + E ++ +T++++ SKL
Sbjct: 496 KFNTGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKL 530
Score = 72 (30.4 bits), Expect = 0.00033, Sum P(3) = 0.00033
Identities = 26/94 (27%), Positives = 43/94 (45%)
Query: 244 STSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANM 303
ST + GQ D ++ G L G VK++ G F+ P G G P + SD F
Sbjct: 712 STVEGGQ--DPKSLSEIQPGMLLIGFVKSIKDYGVFVQFPSGLSGLSPKTIMSDK-FVTT 768
Query: 304 MGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKED 335
++ GQ V +V + S+ ++ L+++ D
Sbjct: 769 PSEHFVE-GQTVVAKVTNVDESKQRMLLSLRLSD 801
Score = 42 (19.8 bits), Expect = 0.00033, Sum P(3) = 0.00033
Identities = 18/72 (25%), Positives = 32/72 (44%)
Query: 372 RDKSATAAKKSEKPTPIEIGGEV--------SQMEAGSSIPKVQDQPTSSDDGMASVPSA 423
R++S +++ ++P + GG+ S+ E + PK P D G+ V
Sbjct: 1451 REESGLYSQEKKEPRKSQRGGQSKRERQESESEQELVNKRPKKSGAPEDDDSGV-EVYYR 1509
Query: 424 VGET-VEDHEAP 434
GE VE+ + P
Sbjct: 1510 EGEDEVEEPKVP 1521
>CGD|CAL0000295 [details] [associations]
symbol:IFF8 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0009986 "cell surface"
evidence=ISS] [GO:0009277 "fungal-type cell wall" evidence=IDA]
[GO:0008150 "biological_process" evidence=ND] CGD:CAL0000295
GO:GO:0009986 eggNOG:NOG12793 GO:GO:0009277 EMBL:AACQ01000109
EMBL:AACQ01000108 InterPro:IPR021031 Pfam:PF11765
RefSeq:XP_714158.1 RefSeq:XP_714201.1 GeneID:3644117 GeneID:3644195
KEGG:cal:CaO19.570 KEGG:cal:CaO19.8201 Uniprot:Q59XB0
Length = 714
Score = 124 (48.7 bits), Expect = 0.00038, P = 0.00038
Identities = 53/251 (21%), Positives = 102/251 (40%)
Query: 410 PTSSDDGMASVPSAVGETVE----DHEAPSKEKGELADIAN---RNDDPQNVMSGSSETL 462
P + DDG +S S V T D + S GE + + + + N S +SET
Sbjct: 340 PNAPDDGSSSSSSVVSSTTSTASTDSASLSSTSGEESSASTTTTESSETSNTSSNASET- 398
Query: 463 DGALQTIEKETEETT--LNQTIEETPSTDVSGELAEQALSTDGPKAGEFTESQTEDTIAK 520
+G+ E TT ++TI + S++ SG +E + ST ++ E TES ++
Sbjct: 399 NGSSTESETTGSATTSEASETINSSESSETSGA-SETSQSTGTSESSE-TESSVTESSET 456
Query: 521 DEVQILTPAXXXXXXXXXXXALAPEGSVSTEKQIIGEAASTNLSGEIAEQVSVSDSPKDE 580
D + T + + S + ++ST LSG+ ++ S++ +
Sbjct: 457 DSITATTSDTTSSGNDNSSVTSSSDASTDSITSETASSSSTPLSGDSSQVSSLTTGTSPD 516
Query: 581 EVVQNQTDDVI------AKDEEQIQTPTTESEIPSAGSLK-EKESGPIPDKNGSITSSGE 633
+ QTD + +Q+ + P+ G + + + I + + TS+
Sbjct: 517 TIASFQTDSTSFGFGSGSPSSGAVQSSGVTNSTPNTGDVNTQSNTANIATSDNTATSTAS 576
Query: 634 -EPDVSSSQKT 643
+ V+++ T
Sbjct: 577 NDTGVNTATAT 587
>UNIPROTKB|Q59XB0 [details] [associations]
symbol:IFF8 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0009277 "fungal-type cell wall" evidence=IDA]
[GO:0009986 "cell surface" evidence=ISS] CGD:CAL0000295
GO:GO:0009986 eggNOG:NOG12793 GO:GO:0009277 EMBL:AACQ01000109
EMBL:AACQ01000108 InterPro:IPR021031 Pfam:PF11765
RefSeq:XP_714158.1 RefSeq:XP_714201.1 GeneID:3644117 GeneID:3644195
KEGG:cal:CaO19.570 KEGG:cal:CaO19.8201 Uniprot:Q59XB0
Length = 714
Score = 124 (48.7 bits), Expect = 0.00038, P = 0.00038
Identities = 53/251 (21%), Positives = 102/251 (40%)
Query: 410 PTSSDDGMASVPSAVGETVE----DHEAPSKEKGELADIAN---RNDDPQNVMSGSSETL 462
P + DDG +S S V T D + S GE + + + + N S +SET
Sbjct: 340 PNAPDDGSSSSSSVVSSTTSTASTDSASLSSTSGEESSASTTTTESSETSNTSSNASET- 398
Query: 463 DGALQTIEKETEETT--LNQTIEETPSTDVSGELAEQALSTDGPKAGEFTESQTEDTIAK 520
+G+ E TT ++TI + S++ SG +E + ST ++ E TES ++
Sbjct: 399 NGSSTESETTGSATTSEASETINSSESSETSGA-SETSQSTGTSESSE-TESSVTESSET 456
Query: 521 DEVQILTPAXXXXXXXXXXXALAPEGSVSTEKQIIGEAASTNLSGEIAEQVSVSDSPKDE 580
D + T + + S + ++ST LSG+ ++ S++ +
Sbjct: 457 DSITATTSDTTSSGNDNSSVTSSSDASTDSITSETASSSSTPLSGDSSQVSSLTTGTSPD 516
Query: 581 EVVQNQTDDVI------AKDEEQIQTPTTESEIPSAGSLK-EKESGPIPDKNGSITSSGE 633
+ QTD + +Q+ + P+ G + + + I + + TS+
Sbjct: 517 TIASFQTDSTSFGFGSGSPSSGAVQSSGVTNSTPNTGDVNTQSNTANIATSDNTATSTAS 576
Query: 634 -EPDVSSSQKT 643
+ V+++ T
Sbjct: 577 NDTGVNTATAT 587
>UNIPROTKB|Q14690 [details] [associations]
symbol:PDCD11 "Protein RRP5 homolog" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
SMART:SM00386 GO:GO:0005829 GO:GO:0005634 GO:GO:0005730
EMBL:CH471066 GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AL591408
GO:GO:0006364 EMBL:AL139339 InterPro:IPR022967 SMART:SM00316
CTD:22984 eggNOG:COG0539 HOGENOM:HOG000088607 HOVERGEN:HBG108419
KO:K14792 EMBL:D80007 EMBL:AL603983 EMBL:BC049838 EMBL:BC064486
EMBL:BC080560 EMBL:BC111040 EMBL:AY007124 IPI:IPI00400922
RefSeq:NP_055791.1 UniGene:Hs.239499 PDB:1WI5 PDBsum:1WI5
ProteinModelPortal:Q14690 SMR:Q14690 IntAct:Q14690
MINT:MINT-1388150 STRING:Q14690 PhosphoSite:Q14690 DMDM:145559523
SWISS-2DPAGE:Q14690 PaxDb:Q14690 PRIDE:Q14690 DNASU:22984
Ensembl:ENST00000369797 GeneID:22984 KEGG:hsa:22984 UCSC:uc001kwy.1
GeneCards:GC10P105156 H-InvDB:HIX0009176 HGNC:HGNC:13408
HPA:CAB026472 HPA:HPA017924 MIM:612333 neXtProt:NX_Q14690
PharmGKB:PA134909758 InParanoid:Q14690 OMA:LHLADIY
OrthoDB:EOG4XKV63 PhylomeDB:Q14690 ChiTaRS:PDCD11
EvolutionaryTrace:Q14690 GenomeRNAi:22984 NextBio:43819
ArrayExpress:Q14690 Bgee:Q14690 CleanEx:HS_PDCD11
Genevestigator:Q14690 GermOnline:ENSG00000148843 Uniprot:Q14690
Length = 1871
Score = 105 (42.0 bits), Expect = 0.00041, Sum P(4) = 0.00041
Identities = 25/86 (29%), Positives = 46/86 (53%)
Query: 140 VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
++ D+ PGA G V +I+ +G + G GLV L+D +K+ +G EVK
Sbjct: 445 LRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVK 504
Query: 200 VRLIEANAETGRISLTMRESDDISKL 225
R++ + E ++ +T++++ SKL
Sbjct: 505 CRVLLCDPEAKKLMMTLKKTLIESKL 530
Score = 74 (31.1 bits), Expect = 0.00041, Sum P(4) = 0.00041
Identities = 28/103 (27%), Positives = 47/103 (45%)
Query: 244 STSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANM 303
ST + GQ D ++ G L G VK++ G FI P G G P + SD F
Sbjct: 712 STVEGGQ--DPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDK-FVTS 768
Query: 304 MGGSSLQVGQEVSVRVLRIS--RGQVTLTMKKEDDVGSNLQLT 344
++ GQ V+ +V + + ++ L+++ D +L +T
Sbjct: 769 TSDHFVE-GQTVAAKVTNVDEEKQRMLLSLRLSDCGLGDLAIT 810
Score = 45 (20.9 bits), Expect = 0.00041, Sum P(4) = 0.00041
Identities = 15/62 (24%), Positives = 27/62 (43%)
Query: 468 TIEKETEETTLNQTIEETPSTDVSGELAEQALSTDGPKAGEFTESQTEDTIAKDEVQILT 527
T ++E+ + Q + T T G + L+ +GP A +D+ DE + +
Sbjct: 962 TFRFDSEKLQVGQGVSLTLKTTEPG-VTGLLLAVEGPAAKRTMRPTQKDSETVDEDEEVD 1020
Query: 528 PA 529
PA
Sbjct: 1021 PA 1022
Score = 45 (20.9 bits), Expect = 0.00041, Sum P(4) = 0.00041
Identities = 20/89 (22%), Positives = 38/89 (42%)
Query: 557 EAASTNLSGEIAEQVSVSDSPKDEEVVQNQTDDVIAKDEEQIQTPTTESEIPSAGSLKEK 616
+ S +L G++ +Q ++ + + + ++E++ Q E E+PS K++
Sbjct: 1404 DVLSASLEGQLTKQEERKTEAEERDQKGEKKNQ--KRNEKKNQKGQEEVEMPSKE--KQQ 1459
Query: 617 ESGPIPDKNGS--ITSSGEEPD-VSSSQK 642
P K G SG E + VS K
Sbjct: 1460 PQKPQAQKRGGRECRESGSEQERVSKKPK 1488
>SGD|S000004936 [details] [associations]
symbol:YMR317W "Putative protein of unknown function with
some similarity to sialidase" species:4932 "Saccharomyces
cerevisiae" [GO:0005575 "cellular_component" evidence=ND]
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] SGD:S000004936 EMBL:BK006946
EMBL:Z54141 eggNOG:NOG12793 GeneTree:ENSGT00700000104630
OrthoDB:EOG4N33X1 PIR:S59310 RefSeq:NP_014050.2 DIP:DIP-1384N
IntAct:Q04893 MINT:MINT-407657 STRING:Q04893 EnsemblFungi:YMR317W
GeneID:855366 KEGG:sce:YMR317W CYGD:YMR317w OMA:YENDNIR
NextBio:979145 Genevestigator:Q04893 GermOnline:YMR317W
Uniprot:Q04893
Length = 1140
Score = 133 (51.9 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 66/317 (20%), Positives = 124/317 (39%)
Query: 328 TLTMKKEDDVGSNLQLTQGVIHAATNPFVLAFRSNKDISSFLDERDKSATAAKKSEKP-T 386
+L+ D +++ + +N + +N +SS E D +++A ++ P T
Sbjct: 92 SLSYTSSDISSTSVNDVESSTSGPSNSYSALSSTNAQLSSSTTETDSISSSAIQTSSPQT 151
Query: 387 PIEIGGEVSQMEAGSSIPKVQDQPTSSDDGMASVPSAVGETVED-HEAP--SKEKGELAD 443
GG S G S V + SS D A V S+ T+ D +P S +
Sbjct: 152 SSSNGGGSSSEPLGKS--SVLETTASSSDTTA-VTSSTFTTLTDVSSSPKISSSGSAVTS 208
Query: 444 IANRNDDPQNVMSGSSETLDGALQTIEKETEETTLNQTIEETPSTDVSGELAEQALSTDG 503
+ +D + V S S+ + L + +T+++T+ + ST +S + +S++
Sbjct: 209 VGTTSDASKEVFSSSTSDVSSLLSSTSSPAS-STISETLPFS-STILS--ITSSPVSSEA 264
Query: 504 PKAGEFTESQTEDTIAKDEVQILTPAXXXXXXXXXXXALAPEGSVSTEKQIIGEAASTNL 563
P A T I+ + + + ++ E ST + EA S+
Sbjct: 265 PSA-------TSSVISSEASWATSSSVSSEAPLATSSVVSSEAPSSTSSVVSSEAPSST- 316
Query: 564 SGEIAEQVSVSDSPKDEEVVQNQTDDVIAKDEEQIQTPTTESEIPSAGSLKEKESGPIPD 623
S ++ ++S + S T V++ + + + SEI S S P+
Sbjct: 317 SSSVSSEISSTTSSSVSSEAPLATSSVVSSEAPSSTSSSVSSEISSTTSSSVSSEAPLA- 375
Query: 624 KNGSITSSGEEPDVSSS 640
S+ SS E P +SS
Sbjct: 376 -TSSVVSS-EAPSSTSS 390
Score = 41 (19.5 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 622 PDKNGSITSSGEEPDVSSSQK 642
P+K + T+SG+E + ++S K
Sbjct: 917 PEKEVTSTTSGDEAEHTTSTK 937
>SGD|S000004842 [details] [associations]
symbol:RRP5 "RNA binding protein involved in synthesis of
both 18S and 5.8S rRNAs" species:4932 "Saccharomyces cerevisiae"
[GO:0030686 "90S preribosome" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0032040 "small-subunit processome"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0000480 "endonucleolytic cleavage in 5'-ETS of
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR011990
Pfam:PF00575 PROSITE:PS50126 SMART:SM00386 SGD:S000004842
GO:GO:0005730 GO:GO:0008266 EMBL:BK006946 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:Z49939
GO:GO:0030686 GO:GO:0032040 GO:GO:0000447 GO:GO:0000472
InterPro:IPR022967 SMART:SM00316 GO:GO:0000464 GO:GO:0000480
eggNOG:COG0539 KO:K14792 GeneTree:ENSGT00390000012228
HOGENOM:HOG000167551 OrthoDB:EOG4N07P1 PIR:S57596
RefSeq:NP_013956.1 ProteinModelPortal:Q05022 SMR:Q05022
DIP:DIP-6535N IntAct:Q05022 MINT:MINT-680694 STRING:Q05022
PaxDb:Q05022 PeptideAtlas:Q05022 EnsemblFungi:YMR229C GeneID:855269
KEGG:sce:YMR229C CYGD:YMR229c OMA:FYGNVRG NextBio:978879
Genevestigator:Q05022 GermOnline:YMR229C Uniprot:Q05022
Length = 1729
Score = 129 (50.5 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 32/102 (31%), Positives = 56/102 (54%)
Query: 125 ESRRSRTARKSE----MPPVKN-EDLIPGATFTGKVRSIQPFGAFI--DFGAFTDGLVHV 177
+SR S T R+SE + +K D+ G F G ++S+ FG F+ D GL H+
Sbjct: 1237 DSRISLTLRESEINGDLKVLKTYSDIKAGDVFEGTIKSVTDFGVFVKLDNTVNVTGLAHI 1296
Query: 178 SRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRES 219
+ ++D +D+ ++ VG VK +++ N E +ISL+++ S
Sbjct: 1297 TEIADKKPEDLSALFGVGDRVKAIVLKTNPEKKQISLSLKAS 1338
Score = 49 (22.3 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 24/104 (23%), Positives = 43/104 (41%)
Query: 378 AAKKSEKPTPIEIGGEVSQMEAGSSIPKVQDQPTSSDDGM-ASVPSAVG--ETVEDHEAP 434
A K K IE+ + +Q+E P ++ S +G+ A P + D E
Sbjct: 1608 ALKALPKRNHIEVVRKFAQLEFAKGDP---ERGRSLFEGLVADAPKRIDLWNVYVDQEVK 1664
Query: 435 SKEKGELADIANRNDDPQNVMSGSSETLDGALQTIEKETEETTL 478
+K+K ++ D+ R + + + LQ E E +E T+
Sbjct: 1665 AKDKKKVEDLFERIITKKITRKQAKFFFNKWLQFEESEGDEKTI 1708
Score = 47 (21.6 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 26/126 (20%), Positives = 44/126 (34%)
Query: 473 TEETTLNQTIEETPSTDVSGELAEQALSTDGPKAGEFTESQTEDTIAKDEVQILTPAXXX 532
++E L T T + D + E + D AG F +S +E I ++
Sbjct: 1341 SKEAELASTTTTTTTVDQLEKEDEDEVMAD---AG-FNDSDSESDIGDQNTEVADRKPET 1396
Query: 533 XXXXXXXXALAPEGSVSTEKQIIGEAASTNLSGEIAEQVSVSDSPKDEEVVQNQTDDVIA 592
A + + S Q E S + E + E VVQ++T D+
Sbjct: 1397 SSDGLSLSA-GFDWTASILDQAQEEEESDQDQEDFTENKKHKHKRRKENVVQDKTIDINT 1455
Query: 593 KDEEQI 598
+ E +
Sbjct: 1456 RAPESV 1461
>UNIPROTKB|J9P515 [details] [associations]
symbol:NEFH "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005882 "intermediate filament" evidence=IEA]
GO:GO:0005882 GeneTree:ENSGT00690000102043 InterPro:IPR016044
InterPro:IPR018039 Pfam:PF00038 PROSITE:PS00226 InterPro:IPR010790
Pfam:PF07142 EMBL:AAEX03014791 Ensembl:ENSCAFT00000048856
Uniprot:J9P515
Length = 1135
Score = 125 (49.1 bits), Expect = 0.00053, P = 0.00053
Identities = 94/489 (19%), Positives = 190/489 (38%)
Query: 175 VHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATAS 234
V + RLS+ + ++ S +E+ + A T + D + + + + +
Sbjct: 292 VRLDRLSEAAKVNTDAMRSAQEEITEYRRQLQARTTELEALKGTKDSLERQRSELE---- 347
Query: 235 GDKVRTTRRSTSKPGQKRD-EMKTTKFVKG------QDLEGTVKNLT-RSGAFISLPEGE 286
D+ + S + Q+ D E++ TK+ QDL L A+ L EGE
Sbjct: 348 -DRHQADIASYQEAIQQLDTELRNTKWEMAAQLREYQDLLNVKMALDIEIAAYRKLLEGE 406
Query: 287 E---GFLPTSEESDDGFANMMGGSS-LQVGQEVSVRVLRISRGQVTLTMKKEDDVGSNLQ 342
E GF P+ +G + S+ ++V E ++V+ S + + ++ +++ Q
Sbjct: 407 ECRIGFGPSPFSLPEGLPKIPSTSTHIKVKSEEKIKVVEKSEKETVILEEQTEEI----Q 462
Query: 343 LTQGVIHAATNPFVLAFRSNKDISSFLDERDKSATAAKKSEKPTPIEIGGEVSQMEAGSS 402
+T+ V K+ E +++ ++++ P P E + EA S
Sbjct: 463 VTEEVTE----------EEEKEAKEEKGEEEEAEEGEEETKSP-PAEEAASPEKEEAKS- 510
Query: 403 IPKVQDQPTSSD-DGMASVPSAVGETVE---DHEAPSKEKGELADIANRNDDPQNVMSGS 458
P+ P + A S V E + + ++P K K + + A + ++
Sbjct: 511 -PEKAKSPMKEEAKSPAEAKSPVKEEAKSPAEVKSPEKAKSPMKEEAKSPTEVKSPEKAK 569
Query: 459 SETLDGALQTIEKETEETTLNQTIEETPSTD-VSGELAEQALSTDGPKAGEFTESQTEDT 517
S + A +E ++ E + EE S + + E+A S + K+ E+++ +
Sbjct: 570 SPAKEEAKSPVEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEK 629
Query: 518 IAKDEVQILTPAXXXXXXXXXXXALAPEGSVSTEKQ---IIGEAASTNLS-GEIAEQVSV 573
AK + +P + E + S EK + EA S + + E+
Sbjct: 630 -AKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKTKSPVKEEAKS 688
Query: 574 SDSPKDEEVVQNQTDDVIAKDEEQIQTPTTE-SEIPSAGSLKEKESGPIPDKNGS-ITSS 631
+ K E ++ + AK E+ ++P E ++ P KE P+K S +
Sbjct: 689 PEKAKSPEKAKSPVKEE-AKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEE 747
Query: 632 GEEPDVSSS 640
+ P+ + S
Sbjct: 748 AKSPEKAKS 756
>UNIPROTKB|E2RYF6 [details] [associations]
symbol:MUC22 "Mucin-22" species:9606 "Homo sapiens"
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] GO:GO:0016021 EMBL:AL669830
EMBL:AB560770 EMBL:AB600271 EMBL:AB600272 IPI:IPI00973595
RefSeq:NP_001185744.1 UniGene:Hs.582967 PhosphoSite:E2RYF6
Ensembl:ENST00000561890 GeneID:100507679 KEGG:hsa:100507679
UCSC:uc021yug.1 CTD:100507679 GeneCards:GC06P030979
H-InvDB:HIX0164915 H-InvDB:HIX0166030 H-InvDB:HIX0166233
H-InvDB:HIX0167061 H-InvDB:HIX0167293 H-InvDB:HIX0167600
HGNC:HGNC:39755 MIM:613917 neXtProt:NX_E2RYF6 Uniprot:E2RYF6
Length = 1773
Score = 127 (49.8 bits), Expect = 0.00053, P = 0.00053
Identities = 96/458 (20%), Positives = 171/458 (37%)
Query: 205 ANAETGRISLTMRESDDISKLQQQK-DATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKG 263
A +ET +S E+ S + A+ +G + T ++S+ E T V
Sbjct: 841 AGSETTTVSTADSENTTASTADSETTSASTTGSETTTASTTSSETTTASTEGSETTTVST 900
Query: 264 QDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSS-LQVGQEVSVRVLRI 322
D E T+ + T S I+ EG E ++ S+ + G++ + + + +V
Sbjct: 901 TDSETTMVSTTGSERTITSTEGSETTTVSATGSETTVSTEGSGTTTVSITGSETTKVS-- 958
Query: 323 SRGQVTLTMKKEDDVGSNLQLTQGVIHAAT---NPFVLAFRSNKDISSFLDERDKSATAA 379
+ G T T E + +T A+ + A + +S ++ TA+
Sbjct: 959 TTGSETTTTSTEGSEITTASITGSETTTASTEGSETTTASTEGSETTSASTTGSETTTAS 1018
Query: 380 KKSEKPTPIEIGGEVSQMEA--GSSIPKVQDQPTSSDDGMASVPSAVGETVEDHEAPSKE 437
S + T I G + M + GS KV T+S M +V + ET S
Sbjct: 1019 TTSSETTMASIMGSETTMASTIGSETTKVS---TASSK-MTTVFTENSETT----IASTT 1070
Query: 438 KGELADIANRNDDPQNVMSGSSETL-----DGA-LQTIEKETEETTLNQT--IEETPSTD 489
E ++ + + SET +G+ T E ETT T E T +T
Sbjct: 1071 ASETTTVSTAGSETIPASTAGSETTTTTSTEGSETTTASTEGSETTTASTESSETTTATT 1130
Query: 490 VSGELAEQALSTDGPKAGEFTESQTEDTIAKDEVQILTPAXXXXXXXXXXXALAPEGSVS 549
+ E ST+G + + +E T A E +T EGS +
Sbjct: 1131 IGSETT--TASTEGSETTTTSTEGSETTTASTEGSEITTVSTTGSETTTAST---EGSET 1185
Query: 550 TEKQIIGEAASTNLSGEIAEQVSVSDSPKDEEVVQ---NQTDDVIAKDEEQIQTPTTESE 606
T G +T +S +E ++VS + V ++T E T SE
Sbjct: 1186 TTASTEGSELTT-VSTTGSETITVSAEGSETTTVTTMGSETTTASTAGSETTTVSTAGSE 1244
Query: 607 IPSAGSLKEKESGPIPDKNG---SITSSGEEPDVSSSQ 641
+A S++ E+ + +++++G E ++S++
Sbjct: 1245 TTTA-SIEGSETTTVSSTGSETTTVSTTGTETTITSTE 1281
>WB|WBGene00022615 [details] [associations]
symbol:ZC449.5 species:6239 "Caenorhabditis elegans"
[GO:0016021 "integral to membrane" evidence=IEA]
GeneTree:ENSGT00550000074777 EMBL:FO081547 RefSeq:NP_508857.1
ProteinModelPortal:Q23330 STRING:Q23330 PaxDb:Q23330
EnsemblMetazoa:ZC449.5.1 EnsemblMetazoa:ZC449.5.2 GeneID:180776
KEGG:cel:CELE_ZC449.5 UCSC:ZC449.5.1 CTD:180776 WormBase:ZC449.5
eggNOG:NOG303367 HOGENOM:HOG000020336 InParanoid:Q23330 OMA:IVSISCI
NextBio:910906 Uniprot:Q23330
Length = 493
Score = 120 (47.3 bits), Expect = 0.00062, P = 0.00062
Identities = 78/329 (23%), Positives = 135/329 (41%)
Query: 218 ESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSG 277
E + + +K +T + D +TT S K+ E K T+ K ++ T
Sbjct: 86 EEETTTVKSHKKKSTKTTDAPKTTEEPAST---KKSEKKKTESKKA--VKTTTTAAPAES 140
Query: 278 AFISLPEGEEGFLPTSEESDDGFANMMGGSS---LQVGQEVSVRVLRISRGQVTLTMKKE 334
A P EE T EES + A + +S + V +E +V+ S + T E
Sbjct: 141 AETETPSSEEN-KTTEEESGNVSAEEVTTTSSTEVSVEEEQTVKSTEASTEEEKSTEASE 199
Query: 335 DDVGSNLQLTQGVIHA-----ATNPFVLAFRSNKDISSFLDERDKSATAAKKSEKPTPIE 389
+ ++ + ++ + T P +S+K ++ + K + KKS K T E
Sbjct: 200 EATTTSSETSETTEESEEEETTTKP-AKTHKSSKTTTTTTEASTKKDS--KKSHKKTKEE 256
Query: 390 ---IGGEVSQMEAGSSIPKVQDQPTSSDDGMASVPSAVGETVEDHEAPSKE--------- 437
E S E+ S P+ ++P SS+ S P++ T + E P KE
Sbjct: 257 KVTTTPEPSTEESSES-PETSEEPQSSE----STPTSEESTEQSTEKPKKEDKKDKKDKK 311
Query: 438 --KGELADIANRNDDPQNVMSGSSETLDGALQTIEKETE-ETTLNQTIEETPSTDVSGEL 494
K + D +DD ++ S SS++ T E ++ E + +T+E T T SG
Sbjct: 312 DKKQKKEDSEEDDDDKKSKSSSSSDSKTDEKSTSESDSSSEASSEKTVEGTKKTLFSGPP 371
Query: 495 -AEQALSTDGPKAGE--FTESQTEDTIAK 520
+++ +G A E F+E Q + A+
Sbjct: 372 DSDEDDDDEGAGADEAFFSEKQATEAPAE 400
>UNIPROTKB|G4NGL7 [details] [associations]
symbol:MGG_04093 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0008150 "biological_process"
evidence=ND] EMBL:CM001236 RefSeq:XP_003719745.1
EnsemblFungi:MGG_04093T0 GeneID:2677685 KEGG:mgr:MGG_04093
Uniprot:G4NGL7
Length = 3251
Score = 129 (50.5 bits), Expect = 0.00063, P = 0.00063
Identities = 93/444 (20%), Positives = 167/444 (37%)
Query: 212 ISLTMRESDDISKLQQ-QKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTV 270
I T E+ + K ++ ++D + S K ++ + + K+ + K K G+ +
Sbjct: 1423 IESTPVEAPPLPKEEEPEEDLSTSKKKSKSKDKDKDQEKDKKGK-KDKKSKAGKTVAAAA 1481
Query: 271 KNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISRGQVTLT 330
+ S E +E S+ +DD A + G + ++ V + V T
Sbjct: 1482 AIAPAAVLAASALEADEP--EDSQAADDSGA-VNGEEPARAAEDNVPPVAEVPSESVD-T 1537
Query: 331 MKKEDDVGSNLQLTQGVIHAATNPFVLAFRSNKDISSFLDERDKSATAAKKSEKPTPIEI 390
++ E+ T+ + AT + + S + ++ TAA +++ P
Sbjct: 1538 LESEESAA-----TKDTVDVATGEEPAQLAAPDESGSPVSAENEPPTAAPQADDAAP--- 1589
Query: 391 GGEVSQMEAGSSIPKVQDQPTSSDDGMASVPSAVGETVEDHEAPSKEKGELADIANRNDD 450
EA P+ +P + + P V D P K+ E D +D
Sbjct: 1590 ----KDSEADPCEPEAPIKPADVESDVMQTPDVVSA---DALEPEKDAAEPLDGMPSSDL 1642
Query: 451 PQNVMSGSSETLDGALQTIEKETEETTLNQTIEETPSTDV---SGE--LAEQALSTDGPK 505
P++ S + T D A +TI TEE + + EET V +G+ A +A+ P+
Sbjct: 1643 PRD--SEQNATSDDAEKTIP--TEELGIGMSAEETDEKAVEVPTGDEQAAVEAVDAVPPQ 1698
Query: 506 AGEFTESQTE-DTIAKD---EVQILTPAXXXXXXXXXXXALAPEGSVSTEKQIIGEAAST 561
G E+ E + ++ D EV+ P+ A P+ + E Q S
Sbjct: 1699 DGSLQEAAVEAEPVSIDAAPEVEPEVPSAEPTNVDDAAVAEEPQPAEPKEDQPAAPEGSD 1758
Query: 562 NLSGEIAEQVSVSDSPKDEEVVQNQTDDVIAKDEEQIQTPTTESEIPSA--GSLKEKES- 618
E V+ P E T+ A + PT ++++ A GS+ + E+
Sbjct: 1759 ATQDTAPEAVAAGGEPAGEP--STATEPEPASESPTADEPTAQADVAPATDGSIDKSETL 1816
Query: 619 GPIPDKNGSITSSGEEPDVSSSQK 642
DK G + + PDV S K
Sbjct: 1817 DEAQDKAGD-EAPAKAPDVESVPK 1839
>MGI|MGI:1341788 [details] [associations]
symbol:Pdcd11 "programmed cell death 11" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0008134
"transcription factor binding" evidence=ISO] [GO:0043123 "positive
regulation of I-kappaB kinase/NF-kappaB cascade" evidence=TAS]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 SMART:SM00386 MGI:MGI:1341788 GO:GO:0005829
GO:GO:0006915 GO:GO:0005730 GO:GO:0006355 GO:GO:0043123
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006364 InterPro:IPR022967
SMART:SM00316 CTD:22984 eggNOG:COG0539 HOVERGEN:HBG108419 KO:K14792
OMA:LHLADIY OrthoDB:EOG4XKV63 EMBL:AK129080 EMBL:BC038503
EMBL:BC055276 EMBL:BC070468 EMBL:AK003899 EMBL:AK141450
EMBL:AK147950 EMBL:AK161803 EMBL:AF055668 EMBL:AF055669
IPI:IPI00551454 RefSeq:NP_035183.2 UniGene:Mm.41166 HSSP:Q14690
ProteinModelPortal:Q6NS46 SMR:Q6NS46 STRING:Q6NS46
PhosphoSite:Q6NS46 PaxDb:Q6NS46 PRIDE:Q6NS46 DNASU:18572
Ensembl:ENSMUST00000072141 GeneID:18572 KEGG:mmu:18572
UCSC:uc008hup.1 GeneTree:ENSGT00390000012228 InParanoid:Q9CTD8
NextBio:294412 Bgee:Q6NS46 Genevestigator:Q6NS46 Uniprot:Q6NS46
Length = 1862
Score = 108 (43.1 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 30/95 (31%), Positives = 50/95 (52%)
Query: 133 RKSEM--PPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGS 190
RKS + P ++ D+ G G V +I+PFG + G GLV L+D +K+
Sbjct: 436 RKSIIAAPFLRYHDIKIGTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLADIMMKNPEK 495
Query: 191 IVSVGQEVKVRLIEANAETGRISLTMRESDDISKL 225
S G EVK R++ + E ++ +T++++ SKL
Sbjct: 496 KYSPGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKL 530
Score = 70 (29.7 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 26/94 (27%), Positives = 42/94 (44%)
Query: 244 STSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANM 303
ST + GQ D ++ G L G VK + G F+ P G G P + SD F
Sbjct: 712 STVEGGQ--DPKSLSEIQPGMLLIGFVKCIKEYGVFVQFPSGLSGLSPKTIMSDK-FVTT 768
Query: 304 MGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKED 335
++ GQ V +V + S+ ++ L+++ D
Sbjct: 769 PSEHFVE-GQTVVAKVTNVDESKQRMLLSLRLSD 801
Score = 69 (29.3 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 24/80 (30%), Positives = 37/80 (46%)
Query: 248 PGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFIS-LPEGEEGFLPTSEESDDGFANMMGG 306
PG + + KT GQ ++ V T++G ++ LP FLPT SD +
Sbjct: 621 PGVESSQKKTGAVRIGQLVDVKVLEKTKTGLEVAILPHNTPAFLPTPHLSDHAANGPLLH 680
Query: 307 SSLQVGQEVSVRVLRISRGQ 326
LQ G + RVL +S+ +
Sbjct: 681 HWLQTGDTLH-RVLCLSQSE 699
>UNIPROTKB|F1PNP2 [details] [associations]
symbol:NEFH "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005882 "intermediate filament" evidence=IEA]
GO:GO:0005882 GeneTree:ENSGT00690000102043 InterPro:IPR016044
InterPro:IPR018039 Pfam:PF00038 PROSITE:PS00226 InterPro:IPR010790
Pfam:PF07142 OMA:EAKSPGE EMBL:AAEX03014791
Ensembl:ENSCAFT00000019446 Uniprot:F1PNP2
Length = 1143
Score = 124 (48.7 bits), Expect = 0.00068, P = 0.00068
Identities = 94/485 (19%), Positives = 188/485 (38%)
Query: 175 VHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATAS 234
V + RLS+ + ++ S +E+ + A T + D + + + + +
Sbjct: 292 VRLDRLSEAAKVNTDAMRSAQEEITEYRRQLQARTTELEALKGTKDSLERQRSELE---- 347
Query: 235 GDKVRTTRRSTSKPGQKRD-EMKTTKFVKG------QDLEGTVKNLT-RSGAFISLPEGE 286
D+ + S + Q+ D E++ TK+ QDL L A+ L EGE
Sbjct: 348 -DRHQADIASYQEAIQQLDTELRNTKWEMAAQLREYQDLLNVKMALDIEIAAYRKLLEGE 406
Query: 287 E---GFLPTSEESDDGFANMMGGSS-LQVGQEVSVRVLRISRGQVTLTMKKEDDVGSNLQ 342
E GF P+ +G + S+ ++V E ++V+ S + + ++ +++ Q
Sbjct: 407 ECRIGFGPSPFSLPEGLPKIPSTSTHIKVKSEEKIKVVEKSEKETVILEEQTEEI----Q 462
Query: 343 LTQGVIHAATNPFVLAFRSNKDISSFLDERDKSATAAKKSEKPTPIEIGGEVSQMEAGSS 402
+T+ V K+ E +++ ++++ P P E + EA S
Sbjct: 463 VTEEVTE----------EEEKEAKEEKGEEEEAEEGEEETKSP-PAEEAASPEKEEAKS- 510
Query: 403 IPKVQDQPTSSD-DGMASVPSAVGETVE---DHEAPSKEKGELADIANRNDDPQNVMSGS 458
P+ P + A S V E + + ++P K K + + A + ++
Sbjct: 511 -PEKAKSPMKEEAKSPAEAKSPVKEEAKSPAEVKSPEKAKSPMKEEAKSPTEVKSPEKAK 569
Query: 459 SETLDGALQTIEKETEETTLNQTIEETPSTD-VSGELAEQALSTDGPKAGEFTESQTEDT 517
S + A +E ++ E + EE S + + E+A S + K+ E+++ +
Sbjct: 570 SPAKEEAKSPVEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEK 629
Query: 518 IAKDEVQILTPAXXXXXXXXXXXALAPEGSVSTEKQIIGEAASTNLSGEIAEQVSVSDSP 577
AK V+ + A +PE + S K+ EA S + ++ + S
Sbjct: 630 -AKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKE---EAKSPEKAKSPVKEEAKSPEK 685
Query: 578 KDEEVVQNQTDDVIAKDEEQIQTPTTE-SEIPSAGSLKEKESGPIPDKNGS-ITSSGEEP 635
V + AK E+ ++P E ++ P KE P+K S + + P
Sbjct: 686 TKSPVKEEAKSPEKAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSP 745
Query: 636 DVSSS 640
+ + S
Sbjct: 746 EKAKS 750
>UNIPROTKB|F1PLK8 [details] [associations]
symbol:PDCD11 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR003029 InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126 PROSITE:PS50293
SMART:SM00386 GO:GO:0005634 GO:GO:0006397 GO:GO:0003723
Gene3D:1.25.40.10 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 CTD:22984
KO:K14792 OMA:LHLADIY GeneTree:ENSGT00390000012228
EMBL:AAEX03015497 EMBL:AAEX03015498 RefSeq:XP_535003.3
Ensembl:ENSCAFT00000016578 GeneID:477810 KEGG:cfa:477810
Uniprot:F1PLK8
Length = 1870
Score = 113 (44.8 bits), Expect = 0.00081, Sum P(3) = 0.00081
Identities = 25/82 (30%), Positives = 45/82 (54%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
D+ PGA G V +I+P+G + G GL+ L+D +K+ +G EVK R++
Sbjct: 446 DIKPGALVKGTVLTIEPYGMLVKVGEQIRGLIPPMHLADILIKNPEKKYHIGDEVKCRVL 505
Query: 204 EANAETGRISLTMRESDDISKL 225
+ E ++ +T++++ SKL
Sbjct: 506 LCDPEAKKLMMTLKKTLIESKL 527
Score = 72 (30.4 bits), Expect = 0.00081, Sum P(3) = 0.00081
Identities = 62/267 (23%), Positives = 110/267 (41%)
Query: 244 STSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANM 303
ST + GQ D + G L G VK++ G F+ P G G P + SD F
Sbjct: 707 STVEGGQ--DPKNFAEIHPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDK-FVTS 763
Query: 304 MGGSSLQVGQEVSVRVLRISRGQVTLTMKKEDDVGSNLQLTQ-GVIHAATNPFVL---AF 359
++ GQ V +V + + + + +L+L+ G+ AT +L
Sbjct: 764 TSDHFVE-GQTVVAKVTNVDEEKQRMLL--------SLRLSDCGLGDLATTSLLLLSQCL 814
Query: 360 RSNKDISSFLDERDKSATAAKKSEKPTPIEIGGEVSQ-MEAGSSIPKVQDQPTSSDDGMA 418
+ + S + RD S +E + + EV + +E GS + + P S A
Sbjct: 815 EERQGVRSLMSNRD-SVLIQTLAEMTPGMVLDLEVQEVLEDGSVV--FSEGPVSGLVLRA 871
Query: 419 SVPSAVGETVEDHEAPSKEKGELADIANRNDDPQNV-MSGSSETLDGALQTIEKETEETT 477
S G+ VE P ++K + I N + V +S + ++ + ++K +E
Sbjct: 872 SKYHRAGQEVE----PGQKKKVV--ILNVDMLKLEVHVSLCHDLVNRKPKKLKKGSEHQA 925
Query: 478 LNQTIEET---PSTDVSGELAEQALST 501
+ Q +EE+ S +G LA +L++
Sbjct: 926 IVQHLEESFAVASLVETGHLAAFSLTS 952
Score = 38 (18.4 bits), Expect = 0.00081, Sum P(3) = 0.00081
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 42 ISSQRFLLPLPSSVRFFSQFQSGSALQHKSALHII 76
+S R LPL + + Q G+ L+ L+ I
Sbjct: 205 VSGARAFLPLQKAQEYIRQKNKGAKLKVGQYLNCI 239
>DICTYBASE|DDB_G0295719 [details] [associations]
symbol:DDB_G0295719 "unknown" species:44689
"Dictyostelium discoideum" [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
dictyBase:DDB_G0295719 EMBL:AAFI02000070 KO:K10867
RefSeq:XP_002649141.1 EnsemblProtists:DDB0252814 GeneID:8624735
KEGG:ddi:DDB_G0295719 OMA:ILITSEF Uniprot:C7G031
Length = 616
Score = 120 (47.3 bits), Expect = 0.00085, P = 0.00085
Identities = 67/270 (24%), Positives = 110/270 (40%)
Query: 379 AKKSEKP---TPIEIGGEVSQMEAGSSIPKVQDQPTSSDDGMASVPSAVGETVEDHEAPS 435
A+ +E P + E E ++ A SS + Q P S++ A SA + E +EAP+
Sbjct: 213 AESNEAPAQSSAAEQSAESNEAPAQSSAAE-QQAPAESNEAPAQ-SSAAEQPAESNEAPA 270
Query: 436 KEKGELADIANRNDDPQNVMSGSSETLDGALQTIEKETEETTLNQ--TIEETPSTDVSGE 493
+ + + P S + E + ++ E+ TE + Q T + P T SGE
Sbjct: 271 QSSSTV-------EQPPAESSAAPEATEVPAESAEQPTESSNAEQQQTDSQQP-TQSSGE 322
Query: 494 LAEQALSTDGPKAGEFTESQTEDTIAKDEVQILTPAXXXXXXXXXXXALAPEGSVSTEKQ 553
EQ TD + ++ QT D+ + + P + A + + S +Q
Sbjct: 323 --EQQQPTDSQQQPTDSQQQTTDSQQQQTSESSNPTQSSGEQQPTESSNAEQPTDS--QQ 378
Query: 554 IIGEAASTNLSGEIAEQVSVSDSPKDEEVVQNQTDDVIAKDEEQIQTPTTESEIPSAGSL 613
E++S + E EQ S + P + Q +T A E+ QT +TE + A S
Sbjct: 379 PPAESSSAPEATESPEQ-SGEEQPTES---QQETS---ASPTEENQTSSTEEQQQPADST 431
Query: 614 KEKESGPIPDKNGSITSSGEEPDVSSSQKT 643
E P + S + E P S+ Q T
Sbjct: 432 ASVEQ---PAETSSSQQTSEAPAQSNEQPT 458
>FB|FBgn0053265 [details] [associations]
symbol:Muc68E "Mucin 68E" species:7227 "Drosophila
melanogaster" [GO:0005576 "extracellular region" evidence=IEA]
[GO:0008061 "chitin binding" evidence=IEA] [GO:0006030 "chitin
metabolic process" evidence=IEA] [GO:0031012 "extracellular matrix"
evidence=ISM] [GO:0005201 "extracellular matrix structural
constituent" evidence=ISM] InterPro:IPR002557 Pfam:PF01607
PROSITE:PS50940 SMART:SM00494 GO:GO:0005576 EMBL:AE014296
eggNOG:NOG12793 GO:GO:0031012 GO:GO:0008061 GO:GO:0005201
CAZy:CBM14 Gene3D:2.170.140.10 SUPFAM:SSF57625 GO:GO:0006030
GeneTree:ENSGT00700000104174 RefSeq:NP_996064.1 UniGene:Dm.31192
ProteinModelPortal:Q7KUI0 SMR:Q7KUI0 PRIDE:Q7KUI0
EnsemblMetazoa:FBtr0076063 GeneID:2768990 KEGG:dme:Dmel_CG33265
UCSC:CG33265-RA CTD:2768990 FlyBase:FBgn0053265 InParanoid:Q7KUI0
OMA:VEDSTPI OrthoDB:EOG4JQ2D1 PhylomeDB:Q7KUI0 GenomeRNAi:2768990
NextBio:848991 ArrayExpress:Q7KUI0 Bgee:Q7KUI0 Uniprot:Q7KUI0
Length = 1799
Score = 125 (49.1 bits), Expect = 0.00089, P = 0.00089
Identities = 83/345 (24%), Positives = 139/345 (40%)
Query: 328 TLTMKKEDDVGSNLQLTQGVIHAATNPFVLAFRSNKDISSFLDERDKSATAAKKSEKP-- 385
T T K+EDD + ++ + + +T V +N S E D + +EKP
Sbjct: 894 TTTEKREDD--TTVEDSTPIPEESTT--VAQDTTNDPEGSTTREEDTTVAIETTTEKPED 949
Query: 386 -------TPIE-----IGGEVSQMEAGSSIPKVQDQPTSSDDGMASVPSAVGETVEDHEA 433
TPI +G E + GS+ +D T + D P TVED
Sbjct: 950 DTTVEDSTPIPEETTTVGQETTYDPEGSTTR--EDDTTVAIDTTTEKPED-DTTVEDSTP 1006
Query: 434 PSKEKGELADIANRNDDPQNVMSGSSETLDGALQTIEKETEETTLNQTIEETPSTDVSGE 493
+E +A + +DP+ + +T T EK ++TT+ + TP + S
Sbjct: 1007 IPEESTTVAQ--DTTNDPEGSTTREDDTTVAIDTTTEKPEDDTTVE---DSTPIPEESTT 1061
Query: 494 LAEQALSTDGPKAGEFTESQT----EDTIAKDE----VQILTPAXXXXXXXXXXXALAPE 545
+A++ +T P+ E T E T K E V+ TP PE
Sbjct: 1062 IAQE--TTYDPEGSTTREDDTTVAIETTTEKPEDDTTVEDSTPIPEESTTVAQDTTNDPE 1119
Query: 546 GSVSTEKQIIGEAASTNLSGEIAEQVSVSDS-PKDEE---VVQNQTDDV---IAKDEEQI 598
GS + E +T E + +V DS P EE V Q+ T+D ++E+
Sbjct: 1120 GSTTREDDTTVAIDTTTEKPE--DDTTVEDSTPIPEESTTVAQDTTNDPEGSTTREEDTT 1177
Query: 599 QTPTTESEIPSAGSLKEKESGPIPDKNGSI-TSSGEEPDVSSSQK 642
T +E P + E +S PIP++ ++ + +P+ S++++
Sbjct: 1178 VAIETTTEKPEDDTTVE-DSTPIPEETTTVGQETTYDPEGSTTRE 1221
>UNIPROTKB|F8WBK2 [details] [associations]
symbol:TGOLN2 "Trans-Golgi network integral membrane
protein 2" species:9606 "Homo sapiens" [GO:0005802 "trans-Golgi
network" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] InterPro:IPR026084 GO:GO:0005634 GO:GO:0005794
GO:GO:0005802 EMBL:AC093162 PANTHER:PTHR23211 HGNC:HGNC:15450
ChiTaRS:TGOLN2 IPI:IPI01026516 ProteinModelPortal:F8WBK2
PRIDE:F8WBK2 Ensembl:ENST00000409232 ArrayExpress:F8WBK2
Bgee:F8WBK2 Uniprot:F8WBK2
Length = 453
Score = 118 (46.6 bits), Expect = 0.00090, P = 0.00090
Identities = 82/306 (26%), Positives = 127/306 (41%)
Query: 360 RSNKDISSFLDERDKSATAAKKSEKPTPIEIGGEVSQME--AGSSIPKVQDQPTSSDDGM 417
+S + + D +KS AK ++K + + G E + S P++Q S+
Sbjct: 83 KSGAEAKTQKDSSNKSGAEAK-TQKGSTSKSGSEAQTTKDSTSKSHPELQTPKDSTGKSG 141
Query: 418 ASV------PSAVG-ETVEDHEAPSKEKGELA---DIANRND-DPQNVMSGSSETLDGAL 466
A P+ G E ++PSK E D+ N++ D Q GSS++ GA
Sbjct: 142 AEAQTPEDSPNRSGAEAKTQKDSPSKSGSEAQTTKDVPNKSGADGQTPKDGSSKS--GA- 198
Query: 467 QTIEKETEETTLNQTIEE--TPSTDVSGELAEQALSTDGP-KAG--EFTESQTEDTIA-- 519
E +T + N++ E TP + AE+ DGP K+G E T + + +
Sbjct: 199 ---EDQTPKDVPNKSGAEKQTPKDGSNKSGAEEQGPIDGPSKSGAEEQTSKDSPNKVVPE 255
Query: 520 ----KDEVQ-ILTPAXXXXXXXXXXXALAPEGSVSTEKQIIGEAASTNLSGEIAEQVSVS 574
KD + I P+ LA +G +S A T SGE + +S
Sbjct: 256 QPSRKDHSKPISNPSDNKELPKADTNQLADKGKLSPH------AFKTE-SGEETDLIS-- 306
Query: 575 DSPKDEEVVQNQ-TDDVIAKDEEQIQTPTTESEIPSAGSLKEKESGPIPDKN--GSIT-S 630
P EEV ++ T+DV K+ E T E P KEK SG +N G+++ S
Sbjct: 307 --PPQEEVKSSEPTEDVEPKEAEDDDTGPEEGSPPKEE--KEKMSGSASSENREGTLSDS 362
Query: 631 SGEEPD 636
+G E D
Sbjct: 363 TGSEKD 368
>UNIPROTKB|J3KQ45 [details] [associations]
symbol:TGOLN2 "Trans-Golgi network integral membrane
protein 2" species:9606 "Homo sapiens" [GO:0005802 "trans-Golgi
network" evidence=IEA] InterPro:IPR026084 GO:GO:0005802
EMBL:AC093162 PANTHER:PTHR23211 HGNC:HGNC:15450 ChiTaRS:TGOLN2
ProteinModelPortal:J3KQ45 Ensembl:ENST00000409015 OMA:EAKTQKD
Uniprot:J3KQ45
Length = 454
Score = 118 (46.6 bits), Expect = 0.00091, P = 0.00091
Identities = 82/306 (26%), Positives = 127/306 (41%)
Query: 360 RSNKDISSFLDERDKSATAAKKSEKPTPIEIGGEVSQME--AGSSIPKVQDQPTSSDDGM 417
+S + + D +KS AK ++K + + G E + S P++Q S+
Sbjct: 83 KSGAEAKTQKDSSNKSGAEAK-TQKGSTSKSGSEAQTTKDSTSKSHPELQTPKDSTGKSG 141
Query: 418 ASV------PSAVG-ETVEDHEAPSKEKGELA---DIANRND-DPQNVMSGSSETLDGAL 466
A P+ G E ++PSK E D+ N++ D Q GSS++ GA
Sbjct: 142 AEAQTPEDSPNRSGAEAKTQKDSPSKSGSEAQTTKDVPNKSGADGQTPKDGSSKS--GA- 198
Query: 467 QTIEKETEETTLNQTIEE--TPSTDVSGELAEQALSTDGP-KAG--EFTESQTEDTIA-- 519
E +T + N++ E TP + AE+ DGP K+G E T + + +
Sbjct: 199 ---EDQTPKDVPNKSGAEKQTPKDGSNKSGAEEQGPIDGPSKSGAEEQTSKDSPNKVVPE 255
Query: 520 ----KDEVQ-ILTPAXXXXXXXXXXXALAPEGSVSTEKQIIGEAASTNLSGEIAEQVSVS 574
KD + I P+ LA +G +S A T SGE + +S
Sbjct: 256 QPSRKDHSKPISNPSDNKELPKADTNQLADKGKLSPH------AFKTE-SGEETDLIS-- 306
Query: 575 DSPKDEEVVQNQ-TDDVIAKDEEQIQTPTTESEIPSAGSLKEKESGPIPDKN--GSIT-S 630
P EEV ++ T+DV K+ E T E P KEK SG +N G+++ S
Sbjct: 307 --PPQEEVKSSEPTEDVEPKEAEDDDTGPEEGSPPKEE--KEKMSGSASSENREGTLSDS 362
Query: 631 SGEEPD 636
+G E D
Sbjct: 363 TGSEKD 368
>SGD|S000001800 [details] [associations]
symbol:SRP40 "Nucleolar serine-rich protein" species:4932
"Saccharomyces cerevisiae" [GO:0003674 "molecular_function"
evidence=ND] [GO:0006913 "nucleocytoplasmic transport"
evidence=ISS] [GO:0005730 "nucleolus" evidence=IDA] SGD:S000001800
Pfam:PF05022 GO:GO:0005730 GO:GO:0006913 EMBL:BK006944 EMBL:X73541
GeneTree:ENSGT00700000104548 eggNOG:NOG318801 InterPro:IPR007718
RefSeq:NP_013018.3 GeneID:853967 KEGG:sce:YKR092C KO:K02927
RefSeq:NP_013020.3 GeneID:853969 KEGG:sce:YKR094C EMBL:L11275
EMBL:Z28317 PIR:S38170 ProteinModelPortal:P32583 DIP:DIP-2115N
IntAct:P32583 MINT:MINT-472548 STRING:P32583 PaxDb:P32583
EnsemblFungi:YKR092C CYGD:YKR092c OMA:DAXESAR OrthoDB:EOG4M68TB
NextBio:975404 Genevestigator:P32583 GermOnline:YKR092C
Uniprot:P32583
Length = 406
Score = 117 (46.2 bits), Expect = 0.00097, P = 0.00097
Identities = 53/247 (21%), Positives = 95/247 (38%)
Query: 398 EAGSSIPKVQDQPTSSDDGMASVPSAVGETVEDHEAPSKEKGELADIANRNDDPQNVMSG 457
E SS +SS +S S+ GE+ + S +D ++ +D + S
Sbjct: 23 EKSSSSSSSSSSSSSSSSSSSSSSSSSGESSSSSSSSSSSSS--SDSSDSSDSESSSSSS 80
Query: 458 SSETLDGALQTIEKETEETTLNQTIEETPSTDVSGELAEQALSTDGPKAGEFTESQTEDT 517
SS + + E +E + + + + S+ S E + ++ S D K ES ED
Sbjct: 81 SSSSSSSSSSDSESSSESDS-SSSGSSSSSSSSSDESSSESESEDETKK-RARESDNED- 137
Query: 518 IAKDEVQILTPAXXXXXXXXXXXALAPEGSVSTEKQIIGEAASTNLSGEIAEQVSVSDSP 577
AK+ + T S S+E + E+ S + S + S SDS
Sbjct: 138 -AKETKKAKTEPESSSSSESSSSG----SSSSSESESGSESDSDSSSSSSSSSDSESDSE 192
Query: 578 KDEEVVQNQTDDVIAKDEEQIQTPTT-ESEIPSAGSLKEKESGPIPDKNGSITSSGEEPD 636
D + + + + D + + ++ +S+ S+ S +S D + SSG
Sbjct: 193 SDSQSSSSSSSSDSSSDSDSSSSDSSSDSDSSSSSSSSSSDSDSDSDSSSDSDSSGSSDS 252
Query: 637 VSSSQKT 643
SSS +
Sbjct: 253 SSSSDSS 259
>UNIPROTKB|O43493 [details] [associations]
symbol:TGOLN2 "Trans-Golgi network integral membrane
protein 2" species:9606 "Homo sapiens" [GO:0005802 "trans-Golgi
network" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0030133 "transport vesicle" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] Reactome:REACT_11123 InterPro:IPR026084 GO:GO:0016021
GO:GO:0005886 GO:GO:0005634 GO:GO:0005794 GO:GO:0005802
GO:GO:0030133 EMBL:AC093162 PANTHER:PTHR23211 EMBL:AF029316
EMBL:AF029313 EMBL:AF029314 EMBL:AF029315 EMBL:U62390 EMBL:AF027515
EMBL:AF027516 EMBL:X94333 EMBL:AK126465 EMBL:AK222829 EMBL:AK223063
EMBL:BX640868 EMBL:BC008461 EMBL:BC028219 IPI:IPI00012545
IPI:IPI00219049 IPI:IPI00297543 IPI:IPI00445166 IPI:IPI00855725
IPI:IPI00855872 RefSeq:NP_001193769.1 RefSeq:NP_001193770.1
RefSeq:NP_001193773.1 RefSeq:NP_006455.2 UniGene:Hs.593382
IntAct:O43493 MINT:MINT-3372343 STRING:O43493 PhosphoSite:O43493
PaxDb:O43493 PRIDE:O43493 DNASU:10618 Ensembl:ENST00000377386
Ensembl:ENST00000398263 Ensembl:ENST00000444342 GeneID:10618
KEGG:hsa:10618 UCSC:uc002soz.3 UCSC:uc002spb.3 UCSC:uc002spc.2
UCSC:uc021vjw.1 CTD:10618 GeneCards:GC02M085538 H-InvDB:HIX0022878
HGNC:HGNC:15450 HPA:CAB011489 HPA:HPA012609 HPA:HPA012723
MIM:603062 neXtProt:NX_O43493 PharmGKB:PA37959 eggNOG:NOG86902
HOVERGEN:HBG108564 ChiTaRS:TGOLN2 GenomeRNAi:10618 NextBio:40348
ArrayExpress:O43493 Bgee:O43493 Genevestigator:O43493
GermOnline:ENSG00000152291 Uniprot:O43493
Length = 480
Score = 118 (46.6 bits), Expect = 0.00099, P = 0.00099
Identities = 82/306 (26%), Positives = 127/306 (41%)
Query: 360 RSNKDISSFLDERDKSATAAKKSEKPTPIEIGGEVSQME--AGSSIPKVQDQPTSSDDGM 417
+S + + D +KS AK ++K + + G E + S P++Q S+
Sbjct: 83 KSGAEAKTQKDSSNKSGAEAK-TQKGSTSKSGSEAQTTKDSTSKSHPELQTPKDSTGKSG 141
Query: 418 ASV------PSAVG-ETVEDHEAPSKEKGELA---DIANRND-DPQNVMSGSSETLDGAL 466
A P+ G E ++PSK E D+ N++ D Q GSS++ GA
Sbjct: 142 AEAQTPEDSPNRSGAEAKTQKDSPSKSGSEAQTTKDVPNKSGADGQTPKDGSSKS--GA- 198
Query: 467 QTIEKETEETTLNQTIEE--TPSTDVSGELAEQALSTDGP-KAG--EFTESQTEDTIA-- 519
E +T + N++ E TP + AE+ DGP K+G E T + + +
Sbjct: 199 ---EDQTPKDVPNKSGAEKQTPKDGSNKSGAEEQGPIDGPSKSGAEEQTSKDSPNKVVPE 255
Query: 520 ----KDEVQ-ILTPAXXXXXXXXXXXALAPEGSVSTEKQIIGEAASTNLSGEIAEQVSVS 574
KD + I P+ LA +G +S A T SGE + +S
Sbjct: 256 QPSRKDHSKPISNPSDNKELPKADTNQLADKGKLSPH------AFKTE-SGEETDLIS-- 306
Query: 575 DSPKDEEVVQNQ-TDDVIAKDEEQIQTPTTESEIPSAGSLKEKESGPIPDKN--GSIT-S 630
P EEV ++ T+DV K+ E T E P KEK SG +N G+++ S
Sbjct: 307 --PPQEEVKSSEPTEDVEPKEAEDDDTGPEEGSPPKEE--KEKMSGSASSENREGTLSDS 362
Query: 631 SGEEPD 636
+G E D
Sbjct: 363 TGSEKD 368
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.306 0.124 0.328 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 681 605 0.00086 120 3 11 23 0.40 35
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 114
No. of states in DFA: 569 (61 KB)
Total size of DFA: 231 KB (2126 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 64.76u 0.12s 64.88t Elapsed: 00:00:03
Total cpu time: 64.80u 0.12s 64.92t Elapsed: 00:00:03
Start: Thu May 9 22:03:53 2013 End: Thu May 9 22:03:56 2013
WARNINGS ISSUED: 1