BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005707
(681 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225445166|ref|XP_002280712.1| PREDICTED: uncharacterized protein LOC100262932 [Vitis vinifera]
Length = 1135
Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust.
Identities = 381/679 (56%), Positives = 482/679 (70%), Gaps = 51/679 (7%)
Query: 1 MTPVIPCSISSISSIPVTAFTIKKNNCLTRYNSTRKSTKQTISSQRFLLPLPSSVRFFSQ 60
MTPVIP SIS+IS I TAFT KNNCLTR KSTKQT+S QRFLLPL +SVR F Q
Sbjct: 1 MTPVIPSSISNISLISGTAFTSNKNNCLTRCYLLGKSTKQTLSPQRFLLPLSTSVRLFPQ 60
Query: 61 FQSGSALQHKSALHIISATGINVAVEESDSPAADDDSAGASDIPSD-VETSESSSIKSEA 119
++SG L KS HI+SATG +VAVE+SDSPA +D S+GA ++PSD E SE SIKS+
Sbjct: 61 YRSGCTLHRKSRTHILSATGTDVAVEQSDSPATED-SSGAPEVPSDSAEASEEPSIKSDG 119
Query: 120 SPTLAESRRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSR 179
T ++ +R+R RKSEMPPVKNE+L+PGATFTGKV+SIQPFGAFIDFGAFTDGLVHVSR
Sbjct: 120 GVTSSQPKRAR-PRKSEMPPVKNEELVPGATFTGKVKSIQPFGAFIDFGAFTDGLVHVSR 178
Query: 180 LSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVR 239
LSD++VKDVG+IVS+GQEVKVRL+EAN ETGRISLTMR+SDD +K QQQKDA +S DK R
Sbjct: 179 LSDSYVKDVGNIVSIGQEVKVRLVEANTETGRISLTMRDSDDPTKPQQQKDAASSSDKPR 238
Query: 240 TTRRSTSKPGQKRDEM-KTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
+RR+T + Q+RDE+ KT+KFVKGQDLEGTVKNL R+GAFISLPEGEEGFLPTSEE+D+
Sbjct: 239 PSRRNTQRSNQRRDEVKKTSKFVKGQDLEGTVKNLNRAGAFISLPEGEEGFLPTSEEADE 298
Query: 299 GFANMMGGSSLQVGQEVSVRVLRISRGQVTLTMKKEDDVGS-NLQLTQGVIHAATNPFVL 357
GF N+MGGSSLQVGQEVSVRVLRISRGQVTLTMKKE+D +L+L +GV+H ATNPFVL
Sbjct: 299 GFGNLMGGSSLQVGQEVSVRVLRISRGQVTLTMKKEEDAEKLDLKLGEGVVHTATNPFVL 358
Query: 358 AFRSNKDISSFLDERDKSATAAKKSEKP-TPIEIGGEVSQMEAGSSIPKVQDQPTSSDDG 416
AFR NK+I++FLDER+K+ A+ P T EI G+V+Q E + I +VQDQP SSD+
Sbjct: 359 AFRKNKEIATFLDEREKTVEPAEIPAIPKTSEEIEGKVNQAETVTDILEVQDQPASSDEK 418
Query: 417 MASVPSAVGETVEDHEAPSKE--------KGELADIANRNDDPQNVMSGSSETLDGALQT 468
SVPSAV E VE E PS+E L ++A+ ++D ++V+S S ++ D A+QT
Sbjct: 419 SVSVPSAVDEKVEGDETPSEELDVGASAVDDALNEMASNSEDSESVISNSLQSGD-AVQT 477
Query: 469 IEK-----------ETEETTLNQTIEETPST---------DVSGELAEQALSTDGPKAGE 508
IE+ E +T +Q IEE +T D S +A+Q LS++ E
Sbjct: 478 IEEKAVVSSEVLASERSISTASQIIEEASATHEVGSDAKSDPSTAIADQILSSESLVGKE 537
Query: 509 FTESQTEDTIAKDEVQILTP----ATEEKETKDTTEALAPEGSVSTEKQIIGEAASTNL- 563
ESQ++DTIAK EVQI TP EE++ T E S + + + S N
Sbjct: 538 VEESQSDDTIAKVEVQIETPPIVEPVEEEKVDPTPEKNGSVTSSNGQTDVPSSQESMNTD 597
Query: 564 ----------SGEIAE-QVSVSDSPKDEEVVQNQTDDVIAKDEEQIQTPTTESEIPSAGS 612
SGE+ E Q+ S+S E+VV+NQ +D+++K+E QIQTP E+EIPSA
Sbjct: 598 GSEDGGKPAPSGELVESQILSSESQDSEKVVENQANDILSKEEVQIQTPAAENEIPSATP 657
Query: 613 LKEKESGPIPDKNGSITSS 631
+++++ + KN +I++S
Sbjct: 658 VEDEKVETVTAKNNNISNS 676
>gi|255546407|ref|XP_002514263.1| elongation factor ts, putative [Ricinus communis]
gi|223546719|gb|EEF48217.1| elongation factor ts, putative [Ricinus communis]
Length = 972
Score = 592 bits (1527), Expect = e-166, Method: Compositional matrix adjust.
Identities = 325/557 (58%), Positives = 403/557 (72%), Gaps = 29/557 (5%)
Query: 1 MTPVIPCSISSISSIPVTAFTIKKNNCLTRYNSTRKSTKQTISSQRFLLPLPSSVRFFSQ 60
MT V+PCS SSIS IP T F +KKNN LTR N RKS+K ISSQR +LPL +SV F
Sbjct: 1 MTTVVPCSTSSISLIPGTPFRLKKNNNLTRCNLLRKSSKHVISSQRHVLPLLTSVGLFPH 60
Query: 61 FQSGSALQHKSALHIISATGIN--VAVEESDSPAADDDSAGASDIPSDV-ETSESSSIKS 117
++ H+S ++ +SATG + V +EE +SP D++S GASDIP+D ETSE+SSIKS
Sbjct: 61 YRRDCNWLHRSIVYGVSATGTDTDVVIEEPESPVTDENSGGASDIPADAAETSENSSIKS 120
Query: 118 EASPTLAESRRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHV 177
+++ A+++RSR RKSEMPPV NE+LIPGATFTGKVRSIQPFGAF+DFGAFTDGLVHV
Sbjct: 121 DSNRAPAQTKRSRPGRKSEMPPVTNEELIPGATFTGKVRSIQPFGAFVDFGAFTDGLVHV 180
Query: 178 SRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDA--TASG 235
SRLSDNFVKDVG++VSVGQEV VRL+EAN ETGRISLTMRESDD +K QQQ+DA TAS
Sbjct: 181 SRLSDNFVKDVGNVVSVGQEVTVRLVEANTETGRISLTMRESDDTNKSQQQRDAPATASS 240
Query: 236 DKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
K R RR+ K GQ+R++ K +KFVKGQ+LEGTVKNLTRSG FISLPEGEEGFLPTSEE
Sbjct: 241 GKPRPGRRNAPKSGQRREDNKISKFVKGQELEGTVKNLTRSGTFISLPEGEEGFLPTSEE 300
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRISRGQVTLTMKKEDDVGSNLQLTQGVIHAATNPF 355
SD G +MMGGSSL+VGQEVSVRVLRISRGQVTLTMKKE+D N +L QGV+HAATNPF
Sbjct: 301 SDGGLESMMGGSSLEVGQEVSVRVLRISRGQVTLTMKKEEDNKLNTELLQGVVHAATNPF 360
Query: 356 VLAFRSNKDISSFLDERDKSATAAKKSEKP-TPIEIGGEVSQMEAGSSIPKVQDQPTSSD 414
VLAFR N+DISSFL+ER+K A + +P P+E+G + Q E S I +VQ QP+SS+
Sbjct: 361 VLAFRKNRDISSFLEEREKMEKVANQPVEPKIPVEVGEQEKQTETVSDILEVQGQPSSSN 420
Query: 415 DGMASVPSAVGETVEDHEAPSKEKGELADIANRNDDPQNVMSGSSETLDGALQTIEKETE 474
+G SV S V ET+ D +P KE E IA ++ P ++ S S ++++ A+QT+EKE E
Sbjct: 421 EGSDSVTSTVAETLVDETSP-KEVAEEPSIAGDDEVPGSIESSSPQSVEAAVQTVEKEAE 479
Query: 475 E-----------TTLNQTIEETPSTD---------VSGELAEQALSTDGPKAGEFTESQT 514
E +T + E+TP TD GE++ + + P A E E+Q
Sbjct: 480 ESSGTPDPIGSVSTADNITEQTPLTDEMGSDGKSGPYGEISSEVSTPVSPAAEEVVENQL 539
Query: 515 EDTIAKDEVQILTPATE 531
++I +E+Q TP E
Sbjct: 540 GESITNEELQ--TPIAE 554
>gi|224143592|ref|XP_002325009.1| predicted protein [Populus trichocarpa]
gi|222866443|gb|EEF03574.1| predicted protein [Populus trichocarpa]
Length = 976
Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust.
Identities = 316/531 (59%), Positives = 386/531 (72%), Gaps = 13/531 (2%)
Query: 1 MTPVIPCSISSISSIPVTAFTIKKNNCLTRYNSTRKSTKQTISSQRFLLPLPSSVRFFSQ 60
MTPV+PCS S+I IP TAF+I KNN L + +RKSTK SSQR +LPLP V+ F Q
Sbjct: 1 MTPVLPCSTSNICLIPGTAFSINKNNSLKNGSLSRKSTKYASSSQRLVLPLPGFVKLFPQ 60
Query: 61 FQSGSALQHKSALHIISATGINVAVEESDSPAADDDSAGASDIPSDVETSESSSIKSEAS 120
+ A+ H+S H +SATG +VAVEE DSP D DS G S+IP+D + SS K+ +S
Sbjct: 61 YHRDCAMVHRSVAHAVSATGTDVAVEEPDSPVVDKDSDGVSEIPADAVETIDSSTKAGSS 120
Query: 121 PTLAESRRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRL 180
P A+S RS+ +RKSEMPPVKNEDL+PGATFTGKVRSIQPFGAF+DFGAFTDGLVHVS+L
Sbjct: 121 PAPAQSSRSKGSRKSEMPPVKNEDLVPGATFTGKVRSIQPFGAFVDFGAFTDGLVHVSKL 180
Query: 181 SDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVR- 239
SD+FVKDVGS+VSVGQEVKVRL+EAN ETGRISLTMRE+DD SK QQ+ D+ A+G R
Sbjct: 181 SDSFVKDVGSVVSVGQEVKVRLVEANTETGRISLTMRENDDTSKFQQRNDSPATGSSNRQ 240
Query: 240 TTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDG 299
RR+TSKP Q++DE+K++KFVKGQ+LEGTVKNLTRSGAFISLPEGEEGFLP SEESDD
Sbjct: 241 AARRNTSKPNQRKDEVKSSKFVKGQNLEGTVKNLTRSGAFISLPEGEEGFLPRSEESDDV 300
Query: 300 FANMMGGSSLQVGQEVSVRVLRISRGQVTLTMKKEDDVGSNLQLTQGVIHAATNPFVLAF 359
FA MMG SSLQ+GQEVSVRVLRI+RGQVTLTMKKED + +L QG++H ATNPF+LAF
Sbjct: 301 FAGMMGDSSLQIGQEVSVRVLRITRGQVTLTMKKEDADKRDTELIQGIVHTATNPFMLAF 360
Query: 360 RSNKDISSFLDERDKSATAAKKSEKPTPIEIGGEVSQMEAGSSIPKVQDQPTSSDDGMAS 419
R NKDI++FLDER+ A ++ EKP P GE +Q E +I +VQDQP S+D+ +
Sbjct: 361 RKNKDIAAFLDERE---IATEQPEKPIPSVQIGEKNQAEPLPNIAEVQDQPVSNDEVSSG 417
Query: 420 VPSAVGETVEDHEAPSKEKGELADIANRNDDPQNVMSGSSETLDGALQTIEKETEETTLN 479
+PS V E+VE E KE A++A+ P+ V S ++D LQT+EKE E T
Sbjct: 418 IPSMVDESVEGDETSLKEVVVGANVASDEKQPETVES----SVDSTLQTVEKEAEVTGYK 473
Query: 480 --QTIE-ETP-STDVSGELAEQALSTDGPKAGEFTESQTEDTIAKDEVQIL 526
++IE TP + D + + E+ D K E ES T A D VQ L
Sbjct: 474 EPESIESSTPQNVDDTVQTLEKKAVADDDKEPESMESSTSQN-ADDTVQAL 523
>gi|449465685|ref|XP_004150558.1| PREDICTED: uncharacterized protein LOC101216355 [Cucumis sativus]
Length = 1122
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 305/653 (46%), Positives = 413/653 (63%), Gaps = 51/653 (7%)
Query: 1 MTPVIPCSISSISSIPVTAFTIKKNNCLTRYNSTRKSTKQTISSQRFLLPLPSSVRFFSQ 60
M+ + P SIS++S +P+ T K N TR++ +RK TK T +QRFLLPL +SVR F
Sbjct: 1 MSVISPSSISNVSLVPIANHT-GKTNSSTRFSFSRKPTKHTFHNQRFLLPLSTSVRLFPN 59
Query: 61 FQSGSALQHKSALHIISATGINVAVEESDSPAADDDSAGASDIPSD-VETSESSSIKSEA 119
H + I SATG +VAVEESDSP + ++S S++ S + T+E + +KS+
Sbjct: 60 CTKNLFCSHGRRIRIFSATGTDVAVEESDSPVSGEESTQNSELTSGAISTNEETPVKSDV 119
Query: 120 SPTLAESRRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSR 179
+PT +++RSR RKSEMP V NE+LIPGATFTGKVRSIQPFGAF+DFGAFTDGLVHVSR
Sbjct: 120 APT--QTKRSRPVRKSEMPAVNNEELIPGATFTGKVRSIQPFGAFVDFGAFTDGLVHVSR 177
Query: 180 LSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVR 239
LSD++VKDV S+VSVGQEVKVRLIEANAE GRISL+MRE+D ++K++ AS DK
Sbjct: 178 LSDSYVKDVASVVSVGQEVKVRLIEANAEAGRISLSMREND------ERKESPASNDKPG 231
Query: 240 TTRRSTSKP-GQKRDEM-KTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESD 297
++R+S K G +RDE+ K++ FVKGQDL+GTVKN+TRSGAFISLPEGEEGFLP+SEE+
Sbjct: 232 SSRKSAPKARGPRRDEVKKSSNFVKGQDLQGTVKNITRSGAFISLPEGEEGFLPSSEETF 291
Query: 298 DGFANMMGGSSLQVGQEVSVRVLRISRGQVTLTMKK-EDDVGSNLQLTQGVIHAATNPFV 356
+GF N+MGGS+L++GQEV+VRVLRI+RG+VTLTMKK ED+ S+ Q QG ++AATNPF+
Sbjct: 292 EGFGNLMGGSTLEIGQEVNVRVLRIARGRVTLTMKKDEDNDKSDSQFIQGKVYAATNPFL 351
Query: 357 LAFRSNKDISSFLDERDKSATAAKKS--EKPTPIEIG-GEVSQMEAGSSIPKVQDQPTSS 413
LAFR N DI++FLDER+ AA KS +K T I G + Q+EA + K
Sbjct: 352 LAFRKNNDIATFLDERESIEEAANKSVVQKVTEIVEGIVDADQIEADDKVEK-------- 403
Query: 414 DDGMASVPSAVGETV-EDHEAPSKEKGELADIANRNDDPQNVMSGSSETLDGALQTIEKE 472
SVP AV E V ED S + +A DD ++++S S +DG ++ E
Sbjct: 404 -----SVPPAVDEAVKEDEPERSADSSAVA-----QDDSKSILSTSEGVVDG---VVDAE 450
Query: 473 TEETTLNQTIEETPSTDVSGELA--EQALSTDGPKAGEFTESQTEDTIA-KDEVQILTPA 529
+E N I+ + + +LA + + D T+ + E T++ D +
Sbjct: 451 NKEAEGNSEIKASDDNQLPNDLAVDKSEVLDDSSSDVLVTQDEGESTLSTSDNIVDAVTD 510
Query: 530 TEEKETKDTTEALAPEGSVSTEKQIIGEAASTNLSGEIAEQVSVSDSPKDEEVVQNQT-- 587
T EK+ +++E E S E +++ EAA E QV+V D ++ V +
Sbjct: 511 TTEKKAGESSEVKQSEDEQSEEVRVV-EAAQPIDGPETDGQVAVPDDEANKLVSSESSVS 569
Query: 588 -------DDVIAKDEEQIQTPTTESEIPSAGSLKEKESGPIPDKNGSITSSGE 633
D V A+ E + E+EI SA S +++E P D NGSITS G+
Sbjct: 570 EELVAGEDSVAAEKESEQSRKDLENEIVSASSSEKEEDKPESDSNGSITSLGQ 622
>gi|356495216|ref|XP_003516475.1| PREDICTED: uncharacterized protein LOC100797166 [Glycine max]
Length = 1133
Score = 470 bits (1209), Expect = e-129, Method: Compositional matrix adjust.
Identities = 287/557 (51%), Positives = 358/557 (64%), Gaps = 34/557 (6%)
Query: 1 MTPVIPCSISSISSIPVTAFTIKKNNCLTRYNSTRKSTKQTISSQRFLLPLPSSVRFFSQ 60
M PVIPCSI ++S IPV ++ +KNN LTR+N +R + K SS RFLLP + F Q
Sbjct: 1 MNPVIPCSIGNVSIIPVFIYSTRKNNTLTRFNLSRSTVKPGSSSWRFLLPSFVASGAFPQ 60
Query: 61 FQSGSALQHKSALHIISATGINVAVEESDSPAADDDSAGASDIPSDVETSESSSIKSEAS 120
+ + KS+ I SAT +V VEE SP AD+DS + ++V SE SS KS+A+
Sbjct: 61 NKGIRSFHKKSSTSI-SATETDVTVEEP-SPVADEDSGEITS--NEVGISEDSSSKSDAN 116
Query: 121 PTLAESRRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRL 180
P A+ RRSR ARKSEMPPVKNEDLIPGATFTGKV+S+QPFGAF+D GAFTDGLVH+S L
Sbjct: 117 PDPAKGRRSRPARKSEMPPVKNEDLIPGATFTGKVKSVQPFGAFVDIGAFTDGLVHISML 176
Query: 181 SDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRT 240
SD++VKDV S+VSVGQEVKV+LIE N ET RISL+MRE+ D K Q+KDA +K
Sbjct: 177 SDSYVKDVTSVVSVGQEVKVKLIEVNTETQRISLSMRENADTGK--QRKDAPVKTEKAGP 234
Query: 241 TRRSTSKPGQKRDEM-KTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDG 299
+R++SKP K+D + K+TKF GQ L G+VKNL RSGAFISLPEGEEGFLP SEE DDG
Sbjct: 235 GKRNSSKPSSKKDNVTKSTKFAIGQQLVGSVKNLARSGAFISLPEGEEGFLPVSEEPDDG 294
Query: 300 FANMMGGSSLQVGQEVSVRVLRISRGQVTLTMKKEDD-VGSNLQLTQGVIHAATNPFVLA 358
F N+MG ++L+VGQEV+VRVLRI+RGQVTLTMKKE+D G + GV+H ATNPFVLA
Sbjct: 295 FDNVMGNTTLEVGQEVNVRVLRITRGQVTLTMKKEEDTAGLDSTFNHGVVHVATNPFVLA 354
Query: 359 FRSNKDISSFLDERDKSATAAKK-SEKPTPIEIGGEVSQMEAGSSIPKVQDQPTSSDDGM 417
FR NKDI+SFLDER+K+ +K + T EI G V+Q E +P VQ +P SS
Sbjct: 355 FRKNKDIASFLDEREKTQNEVQKPTTASTSEEIKGTVNQGETVLDVPDVQGEPESSKLTD 414
Query: 418 ASVPSAVGETVEDHEAPSKEKGELADIANRNDDPQNVMSGSSETLDGALQTIEKETEE-- 475
VPSA + + ++ S G I DD N++S S G IEKE E
Sbjct: 415 DDVPSA-EDDISENVGTSATNGSSTAIV---DDESNLVSNVSSPTTGIDSAIEKEEEVAS 470
Query: 476 ---------TTLNQTIEETPSTDVSGELAEQALSTDGPKAGEFTESQTEDTIAKDEVQIL 526
+T+N IEE TDV+ + L TD P E E+ I QI+
Sbjct: 471 GSLIPEEDLSTVNPIIEEVTQTDVTND-----LKTDTP-----VEIANENVIETGVDQIV 520
Query: 527 TPATEEKETKDTTEALA 543
T ++ +T D E A
Sbjct: 521 TEDEKQSQTPDAIEEFA 537
>gi|356531295|ref|XP_003534213.1| PREDICTED: uncharacterized protein LOC100804285 [Glycine max]
Length = 1135
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 327/699 (46%), Positives = 417/699 (59%), Gaps = 96/699 (13%)
Query: 1 MTPVIPCSISSISSIPVTAFTIKKNNCLTRYNSTRKSTKQTISSQRFLLP-------LPS 53
M PVIPCSI ++S IP ++ +KNN LTR N +R + K SS RFLLP P
Sbjct: 1 MNPVIPCSIGNVSIIPGFTYSTRKNNTLTRLNLSRSTVKPGSSSWRFLLPSFVASGAFPQ 60
Query: 54 SVRFFSQFQSGSALQHKSALHIISATGINVAVEESDSPAADDDSAGASDIPSD-VETSES 112
+ R S F HK + ISAT +VAVEE P AD+DS ++PS+ V SE
Sbjct: 61 NKRILS-F-------HKKSRTSISATETDVAVEEP-GPVADEDSG---ELPSNEVGVSED 108
Query: 113 SSIKSEASPTLAESRRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTD 172
S KS+A+P A++RRSR ARKSEMPPVKNEDL+PGATFTGKV+S+QPFGAF+D GAFTD
Sbjct: 109 SFTKSDANPDPAKARRSRPARKSEMPPVKNEDLLPGATFTGKVKSVQPFGAFVDIGAFTD 168
Query: 173 GLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDAT 232
GLVH+S LSD++VKDV S+VSVGQEVKV+LIE N ET RISL+MRE+ D K Q+KDA
Sbjct: 169 GLVHISMLSDSYVKDVASVVSVGQEVKVKLIEVNTETQRISLSMRENVDTGK--QRKDAP 226
Query: 233 ASGDKVRTTRRSTSKPGQKRDEM-KTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLP 291
+K +R+ SKP K+D + K+TKF GQ L G+VKNL RSGAFISLPEGEEGFLP
Sbjct: 227 TKTEKAGPGKRNNSKPSPKKDNVTKSTKFAIGQQLVGSVKNLARSGAFISLPEGEEGFLP 286
Query: 292 TSEESDDGFANMMGGSSLQVGQEVSVRVLRISRGQVTLTMKKEDD-VGSNLQLTQGVIHA 350
SEE DDGF N+MG ++L+VGQEV+VRVLRI+RGQVTLTMKKE+D G + QGV+H
Sbjct: 287 VSEEPDDGFDNVMGNTTLEVGQEVNVRVLRITRGQVTLTMKKEEDTAGLDSTFNQGVVHV 346
Query: 351 ATNPFVLAFRSNKDISSFLDERDKSAT-AAKKSEKPTPIEIGGEVSQMEAGSSIPKVQDQ 409
ATNPFV+AFR NKDI+SFLD+R+K+ T K S T EI G V+Q E +P VQ +
Sbjct: 347 ATNPFVVAFRKNKDIASFLDDREKTQTEVLKPSTASTLEEIKGTVNQGETVLDVPDVQGE 406
Query: 410 PTSS---DDGMASVPSAVGETVEDHEAPSKEKGELADIANRNDDPQNVMSGSSETLDGAL 466
P SS DD VPSA + + ++ S G I DD N++S S G
Sbjct: 407 PESSKLTDD----VPSA-EDDISENVGTSATNGSSTAIV---DDESNLVSNVSSPKTGID 458
Query: 467 QTIEKETEE-----------TTLNQTIEETPSTDVSGELAEQALSTDGPK--AGE-FTES 512
IEKE E +T+N IEE TDV+ L TD P A E E+
Sbjct: 459 SAIEKEEEVAFGSLIPEEDLSTVNPIIEEATQTDVTT----IDLKTDAPVEIANENVIET 514
Query: 513 QTEDTIAKDEVQILTP-ATEE----------------------KETKDTTEALAPEGSVS 549
+ +A+DE Q TP A EE E+ T+ A AP+ S
Sbjct: 515 GVDQIVAEDEKQSQTPNAMEEFAAAVLTDSDVVEPSPDKNDAITESDITSSAPAPQESAG 574
Query: 550 TEKQIIGEA--ASTNLSG---EIAEQVSVSDSPKDE------------EVVQNQTDDVIA 592
+ I E + T+LSG E++ + S++ +E EVV+ DD
Sbjct: 575 DDVGAITENIDSDTSLSGQSDELSPEGSLTTDATEETDQVPSPESSATEVVKTSIDD--P 632
Query: 593 KDEEQIQTPTTESEIPSAGSLKEKESGPIPDKNGSITSS 631
++E + QTP TE+E +++KE DKN S+++S
Sbjct: 633 EEEAKKQTPATENENSFTSQVEDKEVAIASDKNSSLSNS 671
Score = 42.4 bits (98), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 86/186 (46%), Gaps = 32/186 (17%)
Query: 477 TLNQ--TIEETPSTDVSGELAEQALSTDGPKA--------GEFTESQTEDTIAKDEVQIL 526
T+NQ T+ + P DV GE L+ D P A G + + I DE ++
Sbjct: 390 TVNQGETVLDVP--DVQGEPESSKLTDDVPSAEDDISENVGTSATNGSSTAIVDDESNLV 447
Query: 527 T----PATE-----EKETKDTTEALAPEGSVSTEKQIIGEAASTNLSGEIAEQVSVSDSP 577
+ P T EKE + +L PE +ST II EA T+++ + +D+P
Sbjct: 448 SNVSSPKTGIDSAIEKEEEVAFGSLIPEEDLSTVNPIIEEATQTDVTTIDLK----TDAP 503
Query: 578 ---KDEEVVQNQTDDVIAKDEEQIQTPTTESEIPSAGSLKEKESGPIPDKNGSITSSGEE 634
+E V++ D ++A+DE+Q QTP E +A P PDKN +IT S
Sbjct: 504 VEIANENVIETGVDQIVAEDEKQSQTPNAMEEFAAAVLTDSDVVEPSPDKNDAITES--- 560
Query: 635 PDVSSS 640
D++SS
Sbjct: 561 -DITSS 565
>gi|449525214|ref|XP_004169613.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101216355
[Cucumis sativus]
Length = 1106
Score = 460 bits (1184), Expect = e-126, Method: Compositional matrix adjust.
Identities = 308/664 (46%), Positives = 418/664 (62%), Gaps = 72/664 (10%)
Query: 1 MTPVIPCSISSISSIPVTAFTIKKNNCLTRYNSTRKSTKQTISSQRFLLPLPSSVRFFSQ 60
M+ + P SIS++S +P+ T K N+ TR++ +RK TK T +QRFLLPL +SVR F
Sbjct: 1 MSVISPSSISNVSLVPIANHTGKTNSS-TRFSFSRKPTKHTFHNQRFLLPLSTSVRLFPN 59
Query: 61 FQSGSALQHKSALHIISATGINVAVEESDSPAADDDSAGASDIPSD-VETSESSSIKSEA 119
H + I SATG +VAVEESDSP + ++S S++ S + T+E + +KS+
Sbjct: 60 -HXKPFCSHGRRIRIFSATGTDVAVEESDSPVSGEESTQNSELTSGAISTNEETPVKSDV 118
Query: 120 SPTLAESRRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSR 179
+PT +++RSR RKSEMP V NE+LIPGATFTGKVRSIQPFGAF+DFGAFTDGLVHVSR
Sbjct: 119 APT--QTKRSRPVRKSEMPAVNNEELIPGATFTGKVRSIQPFGAFVDFGAFTDGLVHVSR 176
Query: 180 LSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVR 239
LSD++VKDV S+VSVGQEVKVRLIEANAE GRISL+MRE+D ++K++ AS DK
Sbjct: 177 LSDSYVKDVASVVSVGQEVKVRLIEANAEAGRISLSMREND------ERKESPASNDKPG 230
Query: 240 TTRRSTSKP-GQKRDEM-KTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESD 297
++R+S K G +RDE+ K++ FVKGQDL+GTVKN+TRSGAFISLPEGEEGFLP+SEE+
Sbjct: 231 SSRKSAPKARGPRRDEVKKSSNFVKGQDLQGTVKNITRSGAFISLPEGEEGFLPSSEETF 290
Query: 298 DGFANMMGGSSLQVGQEVSVRVLRISRGQVTLTMKK-EDDVGSNLQLTQGVIHAATNPFV 356
+GF N+MGGS+L++GQEV+VRVLRI+RG+VTLTMKK ED+ S+ Q QG ++AATNPF+
Sbjct: 291 EGFGNLMGGSTLEIGQEVNVRVLRIARGRVTLTMKKDEDNDKSDSQFIQGKVYAATNPFL 350
Query: 357 LAFRSNKDISSFLDERDKSATAAKKS--EKPTPIEIG-GEVSQMEAGSSIPKVQDQPTSS 413
LAFR N DI++FLDER+ AA KS +K T I G + Q+EA + K
Sbjct: 351 LAFRKNNDIATFLDERESIEEAANKSVVQKVTEIVEGIVDADQIEADDKVEK-------- 402
Query: 414 DDGMASVPSAVGETV-EDHEAPSKEKGELADIANRNDDPQNVMSGSSETLDGALQTIEKE 472
SVP AV E V ED S + +A DD ++++S S +DG ++ E
Sbjct: 403 -----SVPPAVDEAVKEDEPERSADSSAVA-----QDDSKSILSTSEGVVDG---VVDAE 449
Query: 473 TEETTLNQTIEETPSTDVSGELAEQALSTDGPKAGEFTESQTEDTIAKDEVQILTPATEE 532
+E N I+ + + +LA +S+ D + D +L E
Sbjct: 450 NKEAEGNSEIKASDDNQLPNDLA-------------VDKSEVLDDSSSD---VLVTQDEG 493
Query: 533 KETKDTTEALAPEGSVSTEKQ--IIGEAASTNLSG-EIAEQVSVSDSPKDEEVVQNQT-- 587
+ T T++ + + +TEK+ + + +S +G E QV+V D ++ V +
Sbjct: 494 ESTLSTSDNIVDAVTDTTEKKQGKVLKLSSRKTNGPETDGQVAVPDDEANKLVSSESSVS 553
Query: 588 -------DDVIAKDEEQIQTPTTESEIPSAGSLKEKESGPIPDKNGSITS---SGEEPDV 637
D V A+ E + E+EI SA S +++E P D NGSITS SGEE V
Sbjct: 554 EELVAGEDSVAAEKESEQSRKDLENEIVSASSSEKEEDKPESDSNGSITSLGQSGEE--V 611
Query: 638 SSSQ 641
+ SQ
Sbjct: 612 AESQ 615
>gi|297738788|emb|CBI28033.3| unnamed protein product [Vitis vinifera]
Length = 917
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 284/649 (43%), Positives = 354/649 (54%), Gaps = 167/649 (25%)
Query: 1 MTPVIPCSISSISSIPVTAFTIKKNNCLTRYNSTRKSTKQTISSQRFLLPLPSSVRFFSQ 60
MTPVIP SIS+IS I TAFT KNNCLTR KSTKQT+S QRFLLPL +SVR F Q
Sbjct: 1 MTPVIPSSISNISLISGTAFTSNKNNCLTRCYLLGKSTKQTLSPQRFLLPLSTSVRLFPQ 60
Query: 61 FQSGSALQHKSALHIISATGINVAVEESDSPAADDDSAGASDIPSDVETSESSSIKSEAS 120
++SG L SE SIKS+
Sbjct: 61 YRSGCTLH----------------------------------------PSEEPSIKSDGG 80
Query: 121 PTLAESRRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRL 180
T ++ +R+R RKSEMPPVKNE+L+PGATFTGKV+SIQPFGAFIDFGAFTDGLVHVSRL
Sbjct: 81 VTSSQPKRAR-PRKSEMPPVKNEELVPGATFTGKVKSIQPFGAFIDFGAFTDGLVHVSRL 139
Query: 181 SDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRT 240
SD++VKDVG+IVS+GQEVKVRL+EAN ETGRISLTM E
Sbjct: 140 SDSYVKDVGNIVSIGQEVKVRLVEANTETGRISLTMHEVK-------------------- 179
Query: 241 TRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGF 300
KT+KFVKGQDLEGTVKNL R+GAFISLPEGEEGFLPTSEE+D+GF
Sbjct: 180 ---------------KTSKFVKGQDLEGTVKNLNRAGAFISLPEGEEGFLPTSEEADEGF 224
Query: 301 ANMMGGSSLQVGQEVSVRVLRISRGQVTLTMKKEDDVGSNLQLTQGVIHAATNPFVLAFR 360
N+MGGSSLQV V+H ATNPFVLAF
Sbjct: 225 GNLMGGSSLQV-----------------------------------VVHTATNPFVLAFP 249
Query: 361 SNKDISSFLDERDKSATAAKKSEKPTPIEIGGEVSQMEAGSSIPKVQDQPTSSDDGMASV 420
I K SE EI G+V+Q E + I +VQDQP SSD+ SV
Sbjct: 250 EIPAI-------------PKTSE-----EIEGKVNQAETVTDILEVQDQPASSDEKSVSV 291
Query: 421 PSAVGETVEDHEAPSKEKGELADIANRNDDPQNVMSGSSETL--DGALQTIEKETEETTL 478
PSA G+ V+ E EK + SSE L + ++ T + EE +
Sbjct: 292 PSASGDAVQTIE----EKAVV----------------SSEVLASERSISTASQIIEEASA 331
Query: 479 NQTIEETPSTDVSGELAEQALSTDGPKAGEFTESQTEDTIAKDEVQILTP----ATEEKE 534
+ +D S +A+Q LS++ E ESQ++DTIAK EVQI TP EE++
Sbjct: 332 THEVGSDAKSDPSTAIADQILSSESLVGKEVEESQSDDTIAKVEVQIETPPIVEPVEEEK 391
Query: 535 TKDTTEALAPEGSVSTEKQIIGEAASTNL-----------SGEIAE-QVSVSDSPKDEEV 582
T E S + + + S N SGE+ E Q+ S+S E+V
Sbjct: 392 VDPTPEKNGSVTSSNGQTDVPSSQESMNTDGSEDGGKPAPSGELVESQILSSESQDSEKV 451
Query: 583 VQNQTDDVIAKDEEQIQTPTTESEIPSAGSLKEKESGPIPDKNGSITSS 631
V+NQ +D+++K+E QIQTP E+EIPSA +++++ + KN +I++S
Sbjct: 452 VENQANDILSKEEVQIQTPAAENEIPSATPVEDEKVETVTAKNNNISNS 500
>gi|357500731|ref|XP_003620654.1| Elongation factor Ts [Medicago truncatula]
gi|355495669|gb|AES76872.1| Elongation factor Ts [Medicago truncatula]
Length = 1054
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 218/391 (55%), Positives = 272/391 (69%), Gaps = 25/391 (6%)
Query: 1 MTPVIPCSISSISSIPVTAFTIKKNNCLTRYNSTRKSTKQTISSQRFLLP-------LPS 53
M P+I CS+ + S IP A+ +KNN LTR N +R S + S++RFL P P
Sbjct: 1 MNPIISCSVGNSSVIPGVAYLTRKNNSLTRLNFSRSSLRHGSSTRRFLFPSFVVNGVFPQ 60
Query: 54 SVRFFSQFQSGSALQHKSALHIISATGINVAVEESDSPAADDDSAGASDIPSD-VETSES 112
+ R +S K + ISAT V+VE DSP AD+ S + PS+ V TS
Sbjct: 61 NKRIYSY--------RKKSRTFISATETEVSVEVQDSPVADEVSGES---PSNEVGTSGD 109
Query: 113 SSIKSEASPTLAESRRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTD 172
SS KS+A+ A+++RSR ARKSEMPPVKNEDL+PGA FTGKV+SIQPFGAF+DFGAFTD
Sbjct: 110 SSPKSDANTGSAKAKRSRRARKSEMPPVKNEDLVPGAAFTGKVKSIQPFGAFVDFGAFTD 169
Query: 173 GLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDAT 232
GLVH+S LSD+FVKDV S+VS+GQEV V++IE NAET RISL+MRE+ D K ++A
Sbjct: 170 GLVHISMLSDSFVKDVSSVVSLGQEVTVKVIEVNAETKRISLSMRENTDTGK----RNAP 225
Query: 233 ASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPT 292
+ +K RR +SK G ++D MK TKFV GQ+L+GTVKN+TRSG FISLPEGEEGFLP
Sbjct: 226 NNDEKSGYGRRDSSKSGPRKD-MKKTKFVVGQELQGTVKNMTRSGTFISLPEGEEGFLPL 284
Query: 293 SEESDDGFANMMGGSSLQVGQEVSVRVLRISRGQVTLTMKKEDDVGS-NLQLTQGVIHAA 351
+EE D GF +MG SSL++G+EVSVRVLRI+RGQ TLTMKKE ++ Q A
Sbjct: 285 AEEDDGGFGKIMGKSSLEIGREVSVRVLRITRGQATLTMKKEGAAAELDIAYAQVGDDVA 344
Query: 352 TNPFVLAFRSNKDISSFLDERDKSATAAKKS 382
TNPFVLAFR NKDI+ FLD+R+K + K S
Sbjct: 345 TNPFVLAFRRNKDIAKFLDQREKLQSEVKSS 375
>gi|110741951|dbj|BAE98916.1| hypothetical protein [Arabidopsis thaliana]
Length = 631
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 220/404 (54%), Positives = 280/404 (69%), Gaps = 35/404 (8%)
Query: 1 MTPVIPCSISSISSIPVTAFTIKKNNCLTRYNSTRKSTKQTISS-QRFLLPLPSSVRFFS 59
M + P SIS+ IP +FT+KK++C + + +RK+ KQ +SS QR +LPL +S+R F
Sbjct: 1 MATITPSSISNAWLIPGASFTVKKSDCSIKCSFSRKAGKQILSSTQRLVLPLSTSLRLFP 60
Query: 60 QFQSGSALQ-HKSALHIISATGINVAVEESDSPAADDDSAGASDIPSDVETSESSSIKSE 118
L H+ A + T + AVEE DS + D ET S KS+
Sbjct: 61 THGRQFVLHPHRRA----TGTDVVAAVEEQDSTPV---------VAEDKETVASE--KSD 105
Query: 119 ASPTLAESR-RSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHV 177
A ++SR +R RKSEMP VKNE+L+PGATFTGKVR+IQPFGAF+DFGAFTDGLVHV
Sbjct: 106 APAPTSQSRGTARPGRKSEMPAVKNEELVPGATFTGKVRAIQPFGAFVDFGAFTDGLVHV 165
Query: 178 SRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDK 237
S+LSDNFVKDV S+V++GQEVKVRL+EA+ E+ RISLTMRE+DD K Q + DK
Sbjct: 166 SQLSDNFVKDVSSVVTIGQEVKVRLVEADIESKRISLTMRENDDPPKRQ-----SGGSDK 220
Query: 238 VRT-TRRSTSK-PGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
R+ +R SK GQ++ E +KF KGQ L+G VKNLTRSGAFI++ EGEEGFLPT+EE
Sbjct: 221 PRSGGKRDGSKGGGQRKGEGFNSKFAKGQMLDGVVKNLTRSGAFITIGEGEEGFLPTAEE 280
Query: 296 SDDGFAN-MMGGSSLQVGQEVSVRVLRISRGQVTLTMKKEDDVGSNLQLTQGVIHAATNP 354
+DDG + MMGGSSLQ GQEV VRVLRI+RG+VTLTMK+EDD + TQGV+H ATNP
Sbjct: 281 ADDGIGSMMMGGSSLQAGQEVKVRVLRIARGRVTLTMKEEDDGKFDETTTQGVVHTATNP 340
Query: 355 FVLAFRSNKDISSFLDERDKSATAAKKSEKP---TPIEIGGEVS 395
F+LAFR N++I++FLD+R++ A EKP TP+E E S
Sbjct: 341 FMLAFRKNEEIAAFLDKREEEA------EKPPVETPVEPEAEAS 378
>gi|53794021|gb|AAU93601.1| chloroplast polyprotein of elongation factor Ts precursor
[Arabidopsis thaliana]
Length = 710
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 220/404 (54%), Positives = 280/404 (69%), Gaps = 35/404 (8%)
Query: 1 MTPVIPCSISSISSIPVTAFTIKKNNCLTRYNSTRKSTKQTISS-QRFLLPLPSSVRFFS 59
M + P SIS+ IP +FT+KK++C + + +RK+ KQ +SS QR +LPL +S+R F
Sbjct: 1 MATITPSSISNAWLIPGASFTVKKSDCSIKCSFSRKAGKQILSSTQRLVLPLSTSLRLFP 60
Query: 60 QFQSGSALQ-HKSALHIISATGINVAVEESDSPAADDDSAGASDIPSDVETSESSSIKSE 118
L H+ A + T + AVEE DS + D ET S KS+
Sbjct: 61 THGRQFVLHPHRRA----TGTDVVAAVEEQDSTPV---------VAEDKETVASE--KSD 105
Query: 119 ASPTLAESR-RSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHV 177
A ++SR +R RKSEMP VKNE+L+PGATFTGKVR+IQPFGAF+DFGAFTDGLVHV
Sbjct: 106 APAPTSQSRGTARPGRKSEMPAVKNEELVPGATFTGKVRAIQPFGAFVDFGAFTDGLVHV 165
Query: 178 SRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDK 237
S+LSDNFVKDV S+V++GQEVKVRL+EA+ E+ RISLTMRE+DD K Q + DK
Sbjct: 166 SQLSDNFVKDVSSVVTIGQEVKVRLVEADIESKRISLTMRENDDPPKRQ-----SGGSDK 220
Query: 238 VRT-TRRSTSK-PGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
R+ +R SK GQ++ E +KF KGQ L+G VKNLTRSGAFI++ EGEEGFLPT+EE
Sbjct: 221 PRSGGKRDGSKGGGQRKGEGFNSKFAKGQMLDGVVKNLTRSGAFITIGEGEEGFLPTAEE 280
Query: 296 SDDGFAN-MMGGSSLQVGQEVSVRVLRISRGQVTLTMKKEDDVGSNLQLTQGVIHAATNP 354
+DDG + MMGGSSLQ GQEV VRVLRI+RG+VTLTMK+EDD + TQGV+H ATNP
Sbjct: 281 ADDGIGSMMMGGSSLQAGQEVKVRVLRIARGRVTLTMKEEDDGKFDETTTQGVVHTATNP 340
Query: 355 FVLAFRSNKDISSFLDERDKSATAAKKSEKP---TPIEIGGEVS 395
F+LAFR N++I++FLD+R++ A EKP TP+E E S
Sbjct: 341 FMLAFRKNEEIAAFLDKREEEA------EKPPVETPVEPEAEAS 378
>gi|18417320|ref|NP_567820.1| elongation factor Ts family protein [Arabidopsis thaliana]
gi|4972052|emb|CAB43920.1| putative protein [Arabidopsis thaliana]
gi|7269804|emb|CAB79664.1| putative protein [Arabidopsis thaliana]
gi|15983773|gb|AAL10483.1| AT4g29060/F19B15_90 [Arabidopsis thaliana]
gi|332660180|gb|AEE85580.1| elongation factor Ts family protein [Arabidopsis thaliana]
Length = 953
Score = 384 bits (985), Expect = e-103, Method: Compositional matrix adjust.
Identities = 220/404 (54%), Positives = 280/404 (69%), Gaps = 35/404 (8%)
Query: 1 MTPVIPCSISSISSIPVTAFTIKKNNCLTRYNSTRKSTKQTISS-QRFLLPLPSSVRFFS 59
M + P SIS+ IP +FT+KK++C + + +RK+ KQ +SS QR +LPL +S+R F
Sbjct: 1 MATITPSSISNAWLIPGASFTVKKSDCSIKCSFSRKAGKQILSSTQRLVLPLSTSLRLFP 60
Query: 60 QFQSGSALQ-HKSALHIISATGINVAVEESDSPAADDDSAGASDIPSDVETSESSSIKSE 118
L H+ A + T + AVEE DS + D ET S KS+
Sbjct: 61 THGRQFVLHPHRRA----TGTDVVAAVEEQDSTPV---------VAEDKETVASE--KSD 105
Query: 119 ASPTLAESR-RSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHV 177
A ++SR +R RKSEMP VKNE+L+PGATFTGKVR+IQPFGAF+DFGAFTDGLVHV
Sbjct: 106 APAPTSQSRGTARPGRKSEMPAVKNEELVPGATFTGKVRAIQPFGAFVDFGAFTDGLVHV 165
Query: 178 SRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDK 237
S+LSDNFVKDV S+V++GQEVKVRL+EA+ E+ RISLTMRE+DD K Q + DK
Sbjct: 166 SQLSDNFVKDVSSVVTIGQEVKVRLVEADIESKRISLTMRENDDPPKRQ-----SGGSDK 220
Query: 238 VRT-TRRSTSK-PGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
R+ +R SK GQ++ E +KF KGQ L+G VKNLTRSGAFI++ EGEEGFLPT+EE
Sbjct: 221 PRSGGKRDGSKGGGQRKGEGFNSKFAKGQMLDGVVKNLTRSGAFITIGEGEEGFLPTAEE 280
Query: 296 SDDGFAN-MMGGSSLQVGQEVSVRVLRISRGQVTLTMKKEDDVGSNLQLTQGVIHAATNP 354
+DDG + MMGGSSLQ GQEV VRVLRI+RG+VTLTMK+EDD + TQGV+H ATNP
Sbjct: 281 ADDGIGSMMMGGSSLQAGQEVKVRVLRIARGRVTLTMKEEDDGKFDETTTQGVVHTATNP 340
Query: 355 FVLAFRSNKDISSFLDERDKSATAAKKSEKP---TPIEIGGEVS 395
F+LAFR N++I++FLD+R++ A EKP TP+E E S
Sbjct: 341 FMLAFRKNEEIAAFLDKREEEA------EKPPVETPVEPEAEAS 378
>gi|79325369|ref|NP_001031743.1| elongation factor Ts family protein [Arabidopsis thaliana]
gi|332660181|gb|AEE85581.1| elongation factor Ts family protein [Arabidopsis thaliana]
Length = 709
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 220/404 (54%), Positives = 280/404 (69%), Gaps = 35/404 (8%)
Query: 1 MTPVIPCSISSISSIPVTAFTIKKNNCLTRYNSTRKSTKQTISS-QRFLLPLPSSVRFFS 59
M + P SIS+ IP +FT+KK++C + + +RK+ KQ +SS QR +LPL +S+R F
Sbjct: 1 MATITPSSISNAWLIPGASFTVKKSDCSIKCSFSRKAGKQILSSTQRLVLPLSTSLRLFP 60
Query: 60 QFQSGSALQ-HKSALHIISATGINVAVEESDSPAADDDSAGASDIPSDVETSESSSIKSE 118
L H+ A + T + AVEE DS + D ET S KS+
Sbjct: 61 THGRQFVLHPHRRA----TGTDVVAAVEEQDSTPV---------VAEDKETVASE--KSD 105
Query: 119 ASPTLAESR-RSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHV 177
A ++SR +R RKSEMP VKNE+L+PGATFTGKVR+IQPFGAF+DFGAFTDGLVHV
Sbjct: 106 APAPTSQSRGTARPGRKSEMPAVKNEELVPGATFTGKVRAIQPFGAFVDFGAFTDGLVHV 165
Query: 178 SRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDK 237
S+LSDNFVKDV S+V++GQEVKVRL+EA+ E+ RISLTMRE+DD K Q + DK
Sbjct: 166 SQLSDNFVKDVSSVVTIGQEVKVRLVEADIESKRISLTMRENDDPPKRQ-----SGGSDK 220
Query: 238 VRT-TRRSTSK-PGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
R+ +R SK GQ++ E +KF KGQ L+G VKNLTRSGAFI++ EGEEGFLPT+EE
Sbjct: 221 PRSGGKRDGSKGGGQRKGEGFNSKFAKGQMLDGVVKNLTRSGAFITIGEGEEGFLPTAEE 280
Query: 296 SDDGFAN-MMGGSSLQVGQEVSVRVLRISRGQVTLTMKKEDDVGSNLQLTQGVIHAATNP 354
+DDG + MMGGSSLQ GQEV VRVLRI+RG+VTLTMK+EDD + TQGV+H ATNP
Sbjct: 281 ADDGIGSMMMGGSSLQAGQEVKVRVLRIARGRVTLTMKEEDDGKFDETTTQGVVHTATNP 340
Query: 355 FVLAFRSNKDISSFLDERDKSATAAKKSEKP---TPIEIGGEVS 395
F+LAFR N++I++FLD+R++ A EKP TP+E E S
Sbjct: 341 FMLAFRKNEEIAAFLDKREEEA------EKPPVETPVEPEAEAS 378
>gi|15982885|gb|AAL09789.1| AT4g29060/F19B15_90 [Arabidopsis thaliana]
gi|18377634|gb|AAL66967.1| unknown protein [Arabidopsis thaliana]
gi|20465639|gb|AAM20288.1| unknown protein [Arabidopsis thaliana]
Length = 455
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 220/404 (54%), Positives = 280/404 (69%), Gaps = 35/404 (8%)
Query: 1 MTPVIPCSISSISSIPVTAFTIKKNNCLTRYNSTRKSTKQTISS-QRFLLPLPSSVRFFS 59
M + P SIS+ IP +FT+KK++C + + +RK+ KQ +SS QR +LPL +S+R F
Sbjct: 1 MATITPSSISNAWLIPGASFTVKKSDCSIKCSFSRKAGKQILSSTQRLVLPLSTSLRLFP 60
Query: 60 QFQSGSALQ-HKSALHIISATGINVAVEESDSPAADDDSAGASDIPSDVETSESSSIKSE 118
L H+ A + T + AVEE DS + D ET S KS+
Sbjct: 61 THGRQFVLHPHRRA----TGTDVVAAVEEQDSTPV---------VAEDKETVASE--KSD 105
Query: 119 ASPTLAESR-RSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHV 177
A ++SR +R RKSEMP VKNE+L+PGATFTGKVR+IQPFGAF+DFGAFTDGLVHV
Sbjct: 106 APAPTSQSRGTARPGRKSEMPAVKNEELVPGATFTGKVRAIQPFGAFVDFGAFTDGLVHV 165
Query: 178 SRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDK 237
S+LSDNFVKDV S+V++GQEVKVRL+EA+ E+ RISLTMRE+DD K Q + DK
Sbjct: 166 SQLSDNFVKDVSSVVTIGQEVKVRLVEADIESKRISLTMRENDDPPKRQ-----SGGSDK 220
Query: 238 VRT-TRRSTSK-PGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
R+ +R SK GQ++ E +KF KGQ L+G VKNLTRSGAFI++ EGEEGFLPT+EE
Sbjct: 221 PRSGGKRDGSKGGGQRKGEGFNSKFAKGQMLDGVVKNLTRSGAFITIGEGEEGFLPTAEE 280
Query: 296 SDDGFAN-MMGGSSLQVGQEVSVRVLRISRGQVTLTMKKEDDVGSNLQLTQGVIHAATNP 354
+DDG + MMGGSSLQ GQEV VRVLRI+RG+VTLTMK+EDD + TQGV+H ATNP
Sbjct: 281 ADDGIGSMMMGGSSLQAGQEVKVRVLRIARGRVTLTMKEEDDGKFDETTTQGVVHTATNP 340
Query: 355 FVLAFRSNKDISSFLDERDKSATAAKKSEKP---TPIEIGGEVS 395
F+LAFR N++I++FLD+R++ A EKP TP+E E S
Sbjct: 341 FMLAFRKNEEIAAFLDKREEEA------EKPPVETPVEPEAEAS 378
>gi|115488938|ref|NP_001066956.1| Os12g0541500 [Oryza sativa Japonica Group]
gi|77556660|gb|ABA99456.1| Elongation factor TS family protein, expressed [Oryza sativa
Japonica Group]
gi|113649463|dbj|BAF29975.1| Os12g0541500 [Oryza sativa Japonica Group]
gi|125536917|gb|EAY83405.1| hypothetical protein OsI_38621 [Oryza sativa Indica Group]
gi|125579622|gb|EAZ20768.1| hypothetical protein OsJ_36392 [Oryza sativa Japonica Group]
Length = 1123
Score = 301 bits (772), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 176/387 (45%), Positives = 249/387 (64%), Gaps = 23/387 (5%)
Query: 1 MTPVIPCSISSISSIPVTAFTIKKNNCLTRYNSTRKSTKQTISSQRFLLPLPSSVRFFSQ 60
MTPV+ CS+ +IS + +F + R+ ST + ++ + S+R L P + S
Sbjct: 1 MTPVVHCSVGNISLFHIGSFRPSHEIQIRRFRSTERYSR--VPSRRLLQP-QRAFNLISI 57
Query: 61 FQSGSALQHKSALHIISAT-GINVAVEESDSPAADDDSAGASD--IPSDVETSESSSIKS 117
++ S + + +AT G +V VE+ + P + + S +S+ P E SE + +
Sbjct: 58 YKRSSWSSARRPRTLSAATVGTDVTVEDPNPPPSGETSEESSEDTAPDTAEASEQAEAST 117
Query: 118 EASPTLAESRRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHV 177
+ P + R RKSEMPP+ +EDL+PGA+FTGKVRSI+PFG F+D GAFT+GLVH+
Sbjct: 118 SSIP-----KAGRNIRKSEMPPLNDEDLVPGASFTGKVRSIKPFGVFVDIGAFTEGLVHI 172
Query: 178 SRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDK 237
SR+SD FVKD+ S+ +VGQEV VRL+EAN ETGRISLTMR D K + + ASG +
Sbjct: 173 SRVSDGFVKDISSLFTVGQEVSVRLVEANKETGRISLTMRTGGDYVKPKTETPKAASGGR 232
Query: 238 --VRTTRRSTSKPGQKRDEMKT---TKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPT 292
TT R + + ++RDE K+ T +V+GQ L+G VKN TR+G+F++LP+G EGFLP
Sbjct: 233 NTTATTSRGSPRQTRERDEAKSMGETNYVQGQFLDGVVKNSTRAGSFVTLPDGSEGFLPR 292
Query: 293 SEESDDGFANMMGGSSLQVGQEVSVRVLRISRGQVTLTMKK----EDDVGS-NLQLTQGV 347
EE+ F ++G S+L+VGQ+V V+VL + RGQVTLTMK+ E+D+ S N QL QG
Sbjct: 293 EEEAVALF-TLIGHSALEVGQQVRVKVLNVVRGQVTLTMKEGEDDEEDLASLNTQLKQG- 350
Query: 348 IHAATNPFVLAFRSNKDISSFLDERDK 374
TN F LAFR NK+IS+FLD+R+K
Sbjct: 351 WSRGTNAFELAFRRNKEISAFLDQREK 377
>gi|242046826|ref|XP_002461159.1| hypothetical protein SORBIDRAFT_02g041940 [Sorghum bicolor]
gi|241924536|gb|EER97680.1| hypothetical protein SORBIDRAFT_02g041940 [Sorghum bicolor]
Length = 937
Score = 290 bits (742), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 168/383 (43%), Positives = 242/383 (63%), Gaps = 17/383 (4%)
Query: 1 MTPVIPCSISSISSIPVTAFTIKKNNCLTRYNSTRKSTKQTISSQRFLLPLPSSVRFFSQ 60
MTPV CS+ SIS + +F + + R+ T + ++ S R LL ++ S
Sbjct: 1 MTPVSHCSVGSISLFHIGSFRTSREIQVRRFQGTARYSRVASPSPRRLLQPQAAFHLISI 60
Query: 61 FQSGSALQHKSALHIISAT-GINVAVEESDSPAADDDSAGASDIPSDVETSESSSIKSEA 119
++ S + + +AT G +V VE+ + +D++S A P VE SE ++EA
Sbjct: 61 YKRRSWSSAERPTTLSAATVGTDVTVEDQNPETSDENSEAA---PDAVEASE----QAEA 113
Query: 120 SPTLAESRRS--RTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHV 177
S A S R R RKSEMPP+ EDL+PGA+FTGKV SI+PFG F+D GA+T+GLVH+
Sbjct: 114 STGQASSPRKLGRNIRKSEMPPLNEEDLVPGASFTGKVMSIKPFGVFVDIGAYTEGLVHI 173
Query: 178 SRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDK 237
SR+SD FVKD+ S+ +VGQEV VRL+EAN ET RISLTMRE DD K +++ A+G +
Sbjct: 174 SRVSDGFVKDISSLFTVGQEVSVRLLEANKETKRISLTMREGDDYVKPKKETPKAANGGR 233
Query: 238 VRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESD 297
T ++ Q+ E +K+V GQ L GTVK+ TR+G F++LP+G EGFLP EE+
Sbjct: 234 SATATPRQTRERQEAKETVESKYVPGQSLNGTVKSTTRAGTFVTLPDGSEGFLPREEEAL 293
Query: 298 DGFANMMGGSSLQVGQEVSVRVLRISRGQVTLTMK----KEDDVGS-NLQLTQGVIHAAT 352
F ++G S+++VG+++ V+VL +++GQ TLTMK EDD+ + N++L + T
Sbjct: 294 ALF-TLIGQSAMEVGKQIRVKVLNVAQGQATLTMKGVEDDEDDLKTLNMELKRD-WSRGT 351
Query: 353 NPFVLAFRSNKDISSFLDERDKS 375
N F LAFR NK+IS+FLD+R K+
Sbjct: 352 NAFELAFRRNKEISAFLDQRQKT 374
>gi|212723248|ref|NP_001131522.1| uncharacterized protein LOC100192861 [Zea mays]
Length = 541
Score = 287 bits (735), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 168/395 (42%), Positives = 252/395 (63%), Gaps = 19/395 (4%)
Query: 1 MTPVIPCSISSISSIPVTAFTIKKNNCLTRYNSTRKSTKQTISSQRFLLPLPSSVRFFSQ 60
MTP+ CS+ ++S + ++ + + R+ + + ++ S R LL ++ S
Sbjct: 1 MTPLSHCSVGNVSLFHIGSYRTTREIQIRRFQGSARYSRVASPSPRRLLQPQTAFHLISI 60
Query: 61 FQSGSALQHKSALHIISAT-GINVAVEESDSPAADDDSAGASDI-PSDVETSESSSIKSE 118
++ S + + +AT G +V VE+ + +++ S G S+ P V+ SE ++E
Sbjct: 61 YKRRSWSSPQRPRTLSAATVGTDVTVEDLNPSPSEEASDGNSEAAPDAVDASE----QAE 116
Query: 119 ASPTLAESRR--SRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVH 176
AS A S R R RKSEMPP+ EDL+PGA+FTGKV SI+PFG F+D GAFT+GLVH
Sbjct: 117 ASTGQASSARKLGRNIRKSEMPPLNEEDLVPGASFTGKVMSIKPFGVFVDIGAFTEGLVH 176
Query: 177 VSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGD 236
+SR+SD FVKD+ S+ +VGQEV VRL+EAN ET RISLTMRE DD K Q++ A+G
Sbjct: 177 ISRVSDGFVKDISSLFTVGQEVSVRLLEANKETKRISLTMREGDDYVKPQKEMPKAANGG 236
Query: 237 KVRT-TRRSTSKPGQKRDEMKTT---KFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPT 292
+ T T +S+ + ++R E+K T K+V GQ L GTVK+ TR+G F++LP+G EGFLP
Sbjct: 237 RSATATPKSSPRQTRERQELKETLESKYVPGQSLNGTVKSTTRAGTFVTLPDGSEGFLPR 296
Query: 293 SEESDDGFANMMGGSSLQVGQEVSVRVLRISRGQVTLTMK----KEDDVGS-NLQLTQGV 347
EE+ F ++G S++++G+++ V+VL +++GQ TLTMK EDD+ + N++L +
Sbjct: 297 EEEALALF-TLIGQSAMEIGKQIRVKVLNVAQGQATLTMKGVEDDEDDLKTLNMELKRD- 354
Query: 348 IHAATNPFVLAFRSNKDISSFLDERDKSATAAKKS 382
TN F LAFR NK+IS+FLD+R+++ A S
Sbjct: 355 WSRGTNAFELAFRRNKEISAFLDQRERTKVPADTS 389
>gi|357138151|ref|XP_003570661.1| PREDICTED: uncharacterized protein LOC100836461 [Brachypodium
distachyon]
Length = 962
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 165/382 (43%), Positives = 240/382 (62%), Gaps = 33/382 (8%)
Query: 1 MTPVIPCSISSISSIPVTAFTIKKNNCLTRYNSTRKSTKQTISSQRFLLPLPSSVRFFSQ 60
MTPV+ CS+ SIS + +F + TR+ ++++ ++ + R L P +
Sbjct: 1 MTPVVHCSVGSISLFHIGSFRPSRE---TRFRASQRYSR---AHHRLLQPHTAFNLISIH 54
Query: 61 FQSGSALQHKSALHIISATGI--NVAVEESDSPAADDDSAGASDIPSDVETSESSSIKSE 118
+S S+ L +SA + +VAVE S + + S G+S+ + + SS+ K
Sbjct: 55 KRSWSSANR---LRTLSAAAVETDVAVEGSSPSLSGETSDGSSEAAAPATSPASSAPKPG 111
Query: 119 ASPTLAESRRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVS 178
T RKSEMPP+K++DL+PGA+FTGKVRSI+PFG F+D GA+T+GLVH+S
Sbjct: 112 RGGT----------RKSEMPPLKDDDLVPGASFTGKVRSIKPFGVFVDIGAYTEGLVHIS 161
Query: 179 RLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKV 238
R+SD FV+D+ ++ +VGQEV V+L+EAN +T RISLTMR D K + K A++ G+
Sbjct: 162 RVSDGFVEDISTLFTVGQEVSVKLVEANKQTRRISLTMRTGGDYVK-EAPKAASSGGNPT 220
Query: 239 RTTRRSTSKPGQKRD--EMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEES 296
RS+ P QK+D ++ K+ +GQ L GTVKN TR+G+F++LP+G+EGFLP EE+
Sbjct: 221 AAAPRSS--PRQKKDFKKIDEAKYARGQSLTGTVKNTTRTGSFVTLPDGDEGFLPREEEA 278
Query: 297 DDGFANMMGGSSLQVGQEVSVRVLRISRGQVTLTMK-KEDD----VGSNLQLTQGVIHAA 351
F ++G S+L+VGQ+V V+VL +SRGQV LTMK EDD V N L +G
Sbjct: 279 AALF-TLIGHSALEVGQQVEVKVLNVSRGQVNLTMKGGEDDEDELVSLNTDLKRG-WSRG 336
Query: 352 TNPFVLAFRSNKDISSFLDERD 373
TN F LAFR +K+IS+FLD+R+
Sbjct: 337 TNAFELAFRRSKEISAFLDQRE 358
>gi|168025430|ref|XP_001765237.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683556|gb|EDQ69965.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 899
Score = 202 bits (514), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 123/288 (42%), Positives = 179/288 (62%), Gaps = 29/288 (10%)
Query: 82 NVAVEE------SDSPAADDDSAGASDIPSDVETSESSSIKSEASPTLAESRRSRTARKS 135
NV VEE ++ PAAD+ S ASD ++ ++EAS T +RS+++R +
Sbjct: 4 NVTVEEPAVDTTAEEPAADNTSV-ASD----------AAEQAEASETPKRFQRSKSSRAA 52
Query: 136 EMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVG 195
+ V+ + ++ GA FTGKVRS+Q +GAF+D GAFTDGLVH+S L+ FVK+V +VS+G
Sbjct: 53 KTLTVQKDQIVAGAVFTGKVRSVQSYGAFVDIGAFTDGLVHISELAPKFVKEVTDVVSIG 112
Query: 196 QEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEM 255
QEV VR++E N + GRI+LTMR+ ++ + Q + + S + + +P
Sbjct: 113 QEVTVRVLELNEKAGRIALTMRDRENEEEEQSSRPGSESSAGSGSGGEESGRP------- 165
Query: 256 KTTKFVKGQDLEGTVKNLTRSGAFISLPE-GEEGFLPTSEESDDGFANMMGGSSLQVGQE 314
TK KG++L+GTVKN+ R+GAFI E GEE FL SE ++ G N+ + L VGQE
Sbjct: 166 --TKLKKGEELKGTVKNIIRNGAFIEFAEQGEEAFLRGSEVTEGG-ENVPMENLLTVGQE 222
Query: 315 VSVRVLRISRGQVTLTMKKEDDVGS-NLQLTQGVIHAATNPFVLAFRS 361
V+VRVL++ RG+ LTMK + D+ S N + GV+ +A NPF FRS
Sbjct: 223 VTVRVLKVERGKAYLTMKPQVDMTSVNQSINSGVVGSAANPFATFFRS 270
>gi|168025428|ref|XP_001765236.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683555|gb|EDQ69964.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 421
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 138/371 (37%), Positives = 203/371 (54%), Gaps = 72/371 (19%)
Query: 42 ISSQRFLLPLPSSV---RFFSQFQSGSALQHKSALHIISATGINVAVEE------SDSPA 92
+SS R L PSS+ R FS++ + + ++ NV VEE ++ PA
Sbjct: 40 VSSMRPLKVQPSSLFVSRTFSRYST-------RGQTVFASMEGNVTVEEPAVDTTAEEPA 92
Query: 93 ADDDSAGASDIPSDVETSESSSIKSEASPTLAESRRSRTARKSEMPPVKNEDLIPGATFT 152
AD+ S ASD ++ ++EAS T +RS+++R ++ V+ + ++ GA FT
Sbjct: 93 ADNTSV-ASD----------AAEQAEASETPKRFQRSKSSRAAKTLTVQKDQIVAGAVFT 141
Query: 153 GKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRI 212
GKVRS+Q +GAF+D GAFTDGLVH+S L+ FVK+V +VS+GQEV VR++E N + GRI
Sbjct: 142 GKVRSVQSYGAFVDIGAFTDGLVHISELAPKFVKEVTDVVSIGQEVTVRVLELNEKAGRI 201
Query: 213 SLTMRESDDISKLQQQK-----------------------------------DATASGDK 237
+LTMR+ ++ + Q + ++ AS K
Sbjct: 202 ALTMRDRENEEEEQSSRPGSESSAGSGSGGEESGRPVNRGKIAGRGSGGSRSNSRASEPK 261
Query: 238 VRTTRRSTSKPGQKRD-----EMKTTKFVKGQDLEGTVKNLTRSGAFISLPE-GEEGFLP 291
VR R G+ R ++ TK KG++L+GTVKN+ R+GAFI E GEE FL
Sbjct: 262 VR--RSGVEGDGRNRSDGRGLQVGWTKLKKGEELKGTVKNIIRNGAFIEFAEQGEEAFLR 319
Query: 292 TSEESDDGFANMMGGSSLQVGQEVSVRVLRISRGQVTLTMKKEDDVGS-NLQLTQGVIHA 350
SE ++ G N+ + L VGQEV+VRVL++ RG+ LTMK + D+ S N + GV+ +
Sbjct: 320 GSEVTEGG-ENVPMENLLTVGQEVTVRVLKVERGKAYLTMKPQVDMTSVNQSINSGVVGS 378
Query: 351 ATNPFVLAFRS 361
A NPF F S
Sbjct: 379 AANPFATFFLS 389
>gi|168013345|ref|XP_001759360.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689290|gb|EDQ75662.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 854
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 134/338 (39%), Positives = 189/338 (55%), Gaps = 32/338 (9%)
Query: 108 ETSESSSIKSEASPTLAESRRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDF 167
E+SE+S+ K + + T+ + R K+ V+ + ++PGA FTG+VR +QP+GAF+D
Sbjct: 2 ESSEASAKKMQRNSTM----KGRAGGKT--ITVQKDQIVPGAVFTGRVRFVQPYGAFVDI 55
Query: 168 GAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRE--------S 219
GAFT+GLVHVS L+ +VKDV V VGQEV V ++E N ++ RI+LTMR+
Sbjct: 56 GAFTNGLVHVSELAPGYVKDVSDFVKVGQEVTVTVLEMNEKSKRIALTMRDRESEAAVPG 115
Query: 220 DDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAF 279
D K Q G+ RS KP +++ +K KG+ L+GTVKN+ R+GAF
Sbjct: 116 DGSGKPTNQGKIAGRGN---GGSRSNLKP-----KLRQSKAKKGEVLKGTVKNIIRNGAF 167
Query: 280 ISLPE-GEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISRGQVTLTMKKEDDVG 338
I PE GEE FL SE ++ G N+ + L VGQEV+VRVL+I RG+ LTMK + D+
Sbjct: 168 IEFPEQGEEAFLRGSEVTEGG-ENVPIENLLTVGQEVTVRVLKIERGKAYLTMKPQIDMT 226
Query: 339 S-NLQLTQGVIHAATNPFVLAFRSNKDISSFLDERDKSATAAKKSEKPTPIEIGGEVSQM 397
+ N + GV+ ATNPF FRS +S L D TA+ E T +I V +
Sbjct: 227 AVNDSINSGVVGGATNPFATFFRSVNMVSRTLVPVDAQETASAAHEALTVDKIAS-VPET 285
Query: 398 EAGSSIPKVQDQPTSSDDGMASVPSAVGETVEDHEAPS 435
A VQ+ P + V SA + + EAP+
Sbjct: 286 SAAEEASDVQEAP------VIEVISAAQKAPTEEEAPA 317
>gi|357500599|ref|XP_003620588.1| Elongation factor Ts [Medicago truncatula]
gi|357500701|ref|XP_003620639.1| Elongation factor Ts [Medicago truncatula]
gi|355495603|gb|AES76806.1| Elongation factor Ts [Medicago truncatula]
gi|355495654|gb|AES76857.1| Elongation factor Ts [Medicago truncatula]
Length = 237
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 113/300 (37%), Positives = 150/300 (50%), Gaps = 69/300 (23%)
Query: 1 MTPVIPCSISSISSIPVTAFTIKKNNCLTRYNSTRKSTKQTISSQRFLLPLPSSVRFFSQ 60
M P+I CS+ + S IP A+ +KNN LTR N +R S S++RFL P F
Sbjct: 1 MNPIISCSVGNSSVIPGVAYLTRKNNSLTRLNFSRSSLGHG-STRRFLFPSFVVNNVFPH 59
Query: 61 FQSGSALQHKSALHIISATGINVAVEESDSPAADDDSAGASDIPSD-VETSESSSIKSEA 119
+ + + KS SAT V+VE DSP D+ S S+ PS+ V TSE SS +S+A
Sbjct: 60 NKRICSYRKKSRT-FKSATETEVSVEVQDSPVIDEVS---SESPSNEVGTSEDSSPRSDA 115
Query: 120 SPTLAESRRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSR 179
+ +++RSR ARKSE PPVKNEDL+PG ++
Sbjct: 116 NAGSTKAKRSRPARKSEKPPVKNEDLVPGLCYS--------------------------- 148
Query: 180 LSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVR 239
FVKDV S+ S+GQEV V+ + G
Sbjct: 149 ----FVKDVPSVASLGQEVTVKTPMLKSGPG----------------------------- 175
Query: 240 TTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDG 299
RR + K G ++D+ K KFV GQ+L G+VKN+TRSG FISL GEE F+P +EE DDG
Sbjct: 176 --RRDSLKSGPRKDK-KIMKFVLGQELLGSVKNMTRSGTFISLLAGEEVFIPLAEEDDDG 232
>gi|302755991|ref|XP_002961419.1| hypothetical protein SELMODRAFT_60716 [Selaginella moellendorffii]
gi|300170078|gb|EFJ36679.1| hypothetical protein SELMODRAFT_60716 [Selaginella moellendorffii]
Length = 877
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 108/273 (39%), Positives = 152/273 (55%), Gaps = 33/273 (12%)
Query: 139 PVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEV 198
PV++EDL+ TG+++SI FGAF+D GA DGL+H+S+L + FVK V +V VGQEV
Sbjct: 25 PVQDEDLVADKVLTGRIKSIMTFGAFVDLGARVDGLLHISKLGEGFVKAVEDVVQVGQEV 84
Query: 199 KVRLIEANAETGRISLTMRESDDISKLQQQK----DATASGDK----------------V 238
+V+++EA+ + R+ L + D K + + A A+G +
Sbjct: 85 QVQILEADLQNRRVKLKL--YDPTPKPEPTRAPSSGAPATGGREAFRGKIAGRGAPGAAG 142
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
+ R +T KP KT+ + KGQ G VKNLTR G F+ LP GEEGF+ +E S
Sbjct: 143 QNRRAATDKP-------KTSNYQKGQAATGVVKNLTRRGCFVELPGGEEGFMHANEISVA 195
Query: 299 GFANMMGGSSLQVGQEVSVRVLRISRGQVTLTMKKEDDVGSNLQLTQGVIHAATNPFVLA 358
G N+ + ++VGQEV V+VLRI G++ LTMK+E D+ + G + ATN F LA
Sbjct: 196 G-ENVPIETLVKVGQEVKVKVLRIIEGRINLTMKEELDLKKVNEEFNGSM-TATNAFELA 253
Query: 359 FRSNKDISSFLDE--RDKSATAAKKSEKPTPIE 389
FR N I +L+E R AA K K T E
Sbjct: 254 FRKNAAIRKYLEESGRLPVVEAADKKSKKTKAE 286
>gi|302817215|ref|XP_002990284.1| hypothetical protein SELMODRAFT_40704 [Selaginella moellendorffii]
gi|300141993|gb|EFJ08699.1| hypothetical protein SELMODRAFT_40704 [Selaginella moellendorffii]
Length = 863
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 103/261 (39%), Positives = 150/261 (57%), Gaps = 17/261 (6%)
Query: 140 VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
V++EDL+ TG+++SI FGAF+D GA DGL+H+S+L + FVK V +V VGQEV+
Sbjct: 26 VQDEDLVADKVLTGRIKSIMTFGAFVDLGARVDGLLHISKLGEGFVKAVEDVVQVGQEVQ 85
Query: 200 VRLIEANAETGRISLTMRESDDISKLQQQK----DATASG------DKVRTTRRSTSKPG 249
V+++EA+ + R+ L + D K + + A A+G K+ +
Sbjct: 86 VQILEADLQNRRVKLKL--YDPTPKPEPTRAPSSGAPATGGREAFRGKIAGRGAPGAAGQ 143
Query: 250 QKR---DEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGG 306
+R D+ KT+ + KGQ G VKNLTR G F+ LP GEEGF+ +E S G N+
Sbjct: 144 NRRPATDKPKTSNYQKGQAATGVVKNLTRRGCFVELPGGEEGFMHANEISVAG-ENVPIE 202
Query: 307 SSLQVGQEVSVRVLRISRGQVTLTMKKEDDVGSNLQLTQGVIHAATNPFVLAFRSNKDIS 366
+ ++VGQEV V+VLRI G++ LTMK+E D+ + G + ATN F LAFR N I
Sbjct: 203 TLVKVGQEVKVKVLRIIEGRINLTMKEELDLKKVNEEFNGSM-TATNAFELAFRKNAAIR 261
Query: 367 SFLDERDKSATAAKKSEKPTP 387
+L+E K A S++ P
Sbjct: 262 KYLEESGKLPVEAPASQEKEP 282
>gi|303285568|ref|XP_003062074.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456485|gb|EEH53786.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 844
Score = 125 bits (314), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 81/223 (36%), Positives = 127/223 (56%), Gaps = 7/223 (3%)
Query: 140 VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
V +E ++ GA F G V+ +Q +G F+DFGA +DGLVH+S L D FV++V +VS QEV+
Sbjct: 63 VTDEQVVVGAEFKGVVKRVQEYGCFVDFGAKSDGLVHISELKDGFVENVADVVSENQEVQ 122
Query: 200 VRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTK 259
V + +AE GRISLTM+ ++L+ A + R+ +K + MK +
Sbjct: 123 VFIKSIDAEKGRISLTMKPPPSAAELETILAKEAEREAKFQERK--AKKAASEESMKAVR 180
Query: 260 FV-KGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVR 318
+ KG +EG VK++ GAF+ + EG EG + +E S+D N+ + VG+ V VR
Sbjct: 181 AIKKGTTVEGVVKSIQAFGAFVEIAEGVEGLVHVTEMSED--YNVKPEDFVTVGETVKVR 238
Query: 319 VLRISRGQVTLTMKKEDDVGSNLQLTQGVIHAATNPFVLAFRS 361
VL + +V L+MK++ D+ L+ Q A + + AF+S
Sbjct: 239 VLGVDGQKVKLSMKEKMDLKEMLEGIQTESSAGSMEY--AFKS 279
>gi|428179894|gb|EKX48763.1| hypothetical protein GUITHDRAFT_105392 [Guillardia theta CCMP2712]
Length = 312
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 145/265 (54%), Gaps = 27/265 (10%)
Query: 76 ISATGINVAVEESDSPAADDDSAGASDIPSDVETSESSSIKSEASPTLAESRRSRTARKS 135
+ TG+++ + P A + SD +E + +K E +++RT ++
Sbjct: 25 FAGTGVSLRSAVCNVPVAHAPRHSLALRMSDDAVAEIAGVKEETDGEQRSLKKTRTNKRR 84
Query: 136 EMPPVKNE----DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSI 191
P KN+ D G+T GKV SI P+GAF+D GA TDGLVHVS+L+D FV D+ S+
Sbjct: 85 --TPSKNKKPLSDYEVGSTVPGKVVSIMPYGAFVDIGATTDGLVHVSQLADEFVSDIESV 142
Query: 192 VSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQK 251
V VG EV+VR+ E NA+ ++SL+MR ++A + G+ R RRS G
Sbjct: 143 VKVGDEVQVRITEINADINKVSLSMR----------SENAPSRGE--RNERRSG---GGG 187
Query: 252 RDEM--KTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSL 309
R E+ K F + ++GTV +L GAF+++ EG +G + S+ S++ + L
Sbjct: 188 RSELPEKFKNFDDKEFIKGTVASLMEYGAFVTIGEGVDGLVHISQISEERDTKI--DKVL 245
Query: 310 QVGQEVSVRVLRI--SRGQVTLTMK 332
VGQEV+VR++ R +++L+M+
Sbjct: 246 TVGQEVNVRIINFDQKRKRLSLSMR 270
>gi|308802430|ref|XP_003078528.1| chloroplast polyprotein of elongation factor Ts precursor (ISS)
[Ostreococcus tauri]
gi|116056981|emb|CAL51408.1| chloroplast polyprotein of elongation factor Ts precursor (ISS)
[Ostreococcus tauri]
Length = 294
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 115/205 (56%), Gaps = 10/205 (4%)
Query: 128 RSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKD 187
R R RK+ V++ ++ GA F+GKV+ IQ +G F+DFGA DGLVH+S L D FV+
Sbjct: 55 RRRFPRKN--VTVEDSAVVVGAEFSGKVKRIQDYGCFVDFGAKQDGLVHISELKDGFVES 112
Query: 188 VGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSK 247
V +VS Q+V+V + E G+ISLTM++ K +++ A S + + R K
Sbjct: 113 VAEVVSQDQDVQVWVKEIK--DGKISLTMKK----PKSEEELAAIKSEQEAKFLARQEYK 166
Query: 248 PGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGS 307
Q KG+ +EG VK++ GAF+ + EG EG L +E SDD N+
Sbjct: 167 KQQDAKVQAVKGLKKGEKVEGEVKSIQPFGAFVEVAEGCEGLLHVTELSDD--FNVKVED 224
Query: 308 SLQVGQEVSVRVLRISRGQVTLTMK 332
++VG +V+V ++ I +V L+MK
Sbjct: 225 FVKVGDKVTVTIVGIEGAKVKLSMK 249
>gi|412993233|emb|CCO16766.1| elongation factor Ts [Bathycoccus prasinos]
Length = 831
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 123/245 (50%), Gaps = 53/245 (21%)
Query: 140 VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
V DL G FTGKV+S +GAF+DFGA DGLVH+S L FV++VG +V+V QEVK
Sbjct: 81 VHESDLEVGKEFTGKVKSTTVYGAFVDFGAKNDGLVHISELQSGFVENVGDVVAVDQEVK 140
Query: 200 VRLIEANAETGRISLTMR-------------------ESDDISKLQQQKDATASGDKVRT 240
+ + + E GRISLTM+ E+ KLQ++K + +G+
Sbjct: 141 IWI--KSIEKGRISLTMKQPPTEAEVAQQAADQQAKFEARQAFKLQKEKQSEIAGN---- 194
Query: 241 TRRSTSKPGQKRDEMKTTKFVKGQDLEGT-VKNLTRSGAFISLPEGEEGFLPTSEESDDG 299
KG LEG VK++ G F+ + EG EG + SE SDD
Sbjct: 195 -------------------LKKGAVLEGCEVKSIQNYGIFVEIAEGVEGLVHISELSDD- 234
Query: 300 FANMMGGSSLQVGQEVSVRVLRISRGQVTLTMKKE---DDVGSNLQLTQGVIHAATNPFV 356
+ VG +V+VRVL + +V L+MK++ D++ S++ + + ++ +
Sbjct: 235 -FGVEAKDIANVGDKVTVRVLGVDGSKVKLSMKEKLDLDEMASDMNVE---VESSASAIQ 290
Query: 357 LAFRS 361
AF+S
Sbjct: 291 FAFKS 295
>gi|255072317|ref|XP_002499833.1| predicted protein [Micromonas sp. RCC299]
gi|226515095|gb|ACO61091.1| predicted protein [Micromonas sp. RCC299]
Length = 876
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 110/207 (53%), Gaps = 3/207 (1%)
Query: 156 RSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLT 215
+ +Q +G F+DFGA DGLVH+S L D FV++V +VS Q V V + +AE GRISLT
Sbjct: 152 KRVQEYGCFVDFGAKNDGLVHISELKDGFVENVTDVVSADQAVTVWVKSIDAEKGRISLT 211
Query: 216 MRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTR 275
M+ +L+ K A + + + R + + K KG EG VK++
Sbjct: 212 MKPPPTADELEAIK-AKEAEREAKFAARKAQQAEARAAAEKVKAIKKGTAFEGEVKSVQP 270
Query: 276 SGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISRGQVTLTMKKED 335
GAF+ + EG EG + +E SDD N+ +VG +VSV+VL + +V LTMK +
Sbjct: 271 FGAFVEIMEGVEGLVHVTEMSDD--YNVDVADFCKVGDKVSVKVLDVDGAKVKLTMKDKV 328
Query: 336 DVGSNLQLTQGVIHAATNPFVLAFRSN 362
D+ S ++ + A + AF+S
Sbjct: 329 DISSVVEEVLQEVEAGASMMEFAFKSK 355
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G F G+V+S+QPFGAF++ +GLVHV+ +SD++ DV VG +V V++++ +
Sbjct: 258 GTAFEGEVKSVQPFGAFVEIMEGVEGLVHVTEMSDDYNVDVADFCKVGDKVSVKVLDVDG 317
Query: 208 ETGRISLTMRESDDIS 223
++ LTM++ DIS
Sbjct: 318 --AKVKLTMKDKVDIS 331
>gi|302815257|ref|XP_002989310.1| hypothetical protein SELMODRAFT_427936 [Selaginella moellendorffii]
gi|300142888|gb|EFJ09584.1| hypothetical protein SELMODRAFT_427936 [Selaginella moellendorffii]
Length = 411
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 100/315 (31%), Positives = 140/315 (44%), Gaps = 80/315 (25%)
Query: 135 SEMPP----VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSR----------- 179
S PP VK+E+L+PG TG V++I FGAFID A DGL+H+S+
Sbjct: 67 SRAPPRSFGVKDEELVPGKVLTGSVKAIMTFGAFIDLDARFDGLLHISKISDRFVQNVED 126
Query: 180 -----------------------LSDNFVKDVGSIVSVGQEVKVR------LIEANAETG 210
L + +K GS VS +V + + TG
Sbjct: 127 VLTVGQQVQVEIESVDLPKRRIQLKRHALKAQGSKVSSSGTAQVEGTGALAAVPKDPSTG 186
Query: 211 RISLTMRESDDISKLQQQKDATASGDKVRTTRR----STSKPG---QKRDEMKTTK---- 259
+ +R S + + + + A AS D ++ R ST +PG Q R TT+
Sbjct: 187 TQAARIRASTNGAPVAGKNGAAASQDDGTSSSRIAGTSTKQPGTRFQSRSSGSTTREEIS 246
Query: 260 ---------------------FVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSE-ESD 297
+ KGQ + G VKN TR G F+ LP +EGFL +E ES
Sbjct: 247 KEPSSSPAPRLSSRIPPPKTSYQKGQVVSGVVKNYTRRGCFVQLPGNQEGFLHANEIESS 306
Query: 298 DGFANMMGGSSLQVGQEVSVRVLRISRGQVTLTMKKEDDVGS-NLQLTQGVIHAATNPFV 356
+ ++VGQE+ V+VLRI G++ LTMK+E D+ +L + V ATNPF
Sbjct: 307 REQEPTPVENLVKVGQELKVKVLRIIDGRINLTMKEEVDLKKIKEELNENVF--ATNPFE 364
Query: 357 LAFRSNKDISSFLDE 371
LAFR N I +L E
Sbjct: 365 LAFRKNPVIRGYLKE 379
>gi|452823365|gb|EME30376.1| RNA binding S1 domain protein [Galdieria sulphuraria]
Length = 440
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 114/242 (47%), Gaps = 58/242 (23%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G + GKVR + +GAF+D G FTDGL+HVS++SD FV D IV VG EVKVR++
Sbjct: 151 GQEYVGKVRKVTNYGAFVDIGCFTDGLLHVSQMSDTFVNDPTDIVKVGDEVKVRVVNKKP 210
Query: 208 ETGRISLTMR------------------------ESDD-----------ISKLQQQ---K 229
E SL++R +DD +S+LQ+
Sbjct: 211 ERKEFSLSIRPPRVVKKREEQQVATPMKEMDSKNNTDDNEYAKVRGRSSVSRLQRMGISM 270
Query: 230 DATASGD----------KVRTTRRSTSKPGQKRDEMKTTKFVKGQD----LEGTVKNLTR 275
D ++ D VR +R S++K G + K + D ++GTV ++T
Sbjct: 271 DVESADDSSNPTARVASNVRKSRMSSTK-GSSSMKASFRKLARETDEQKFIKGTVVSVTE 329
Query: 276 SGAFISLPEGEEGFLPTSEESDDGFANMMGGS---SLQVGQEVSVRVLR--ISRGQVTLT 330
GAF+ +G + SE ++D GS + VG EV VRV+ ++R +V+L+
Sbjct: 330 FGAFVDFGGPSDGLIHISEVTEDWLEKDDSGSRKIKVSVGDEVQVRVINVDVNRSRVSLS 389
Query: 331 MK 332
MK
Sbjct: 390 MK 391
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 23/175 (13%)
Query: 67 LQHKSALHIISATGINVAVEESDSPAADDDSAGASDIPSDVETSESSSIKSEASPTLAES 126
++ +S++ + GI++ VE +ADD S + + S+V S SS K S ++ S
Sbjct: 254 VRGRSSVSRLQRMGISMDVE-----SADDSSNPTARVASNVRKSRMSSTK--GSSSMKAS 306
Query: 127 RRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVK 186
R E +K G V S+ FGAF+DFG +DGL+H+S +++++++
Sbjct: 307 FRKLARETDEQKFIK-----------GTVVSVTEFGAFVDFGGPSDGLIHISEVTEDWLE 355
Query: 187 --DVGSI---VSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGD 236
D GS VSVG EV+VR+I + R+SL+M+ +K Q Q+D A+ +
Sbjct: 356 KDDSGSRKIKVSVGDEVQVRVINVDVNRSRVSLSMKPFAMSAKKQLQEDLAAANE 410
>gi|156741406|ref|YP_001431535.1| RNA-binding S1 domain-containing protein [Roseiflexus castenholzii
DSM 13941]
gi|156232734|gb|ABU57517.1| RNA binding S1 domain protein [Roseiflexus castenholzii DSM 13941]
Length = 503
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 102/214 (47%), Gaps = 36/214 (16%)
Query: 124 AESRRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDN 183
AE R R +K E+ K L G G V + PFG F+D G DGLVHVS L++
Sbjct: 214 AEPRSGRGKKKPEVDYDKLAALRVGDNVEGTVTGLAPFGVFVDIGVGKDGLVHVSELAEG 273
Query: 184 FVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRR 243
V+ +V VGQ +++E +AE RISL++R + KLQQ
Sbjct: 274 RVEKAEDVVQVGQTYTFKVLEVDAEGARISLSLRRAQRGQKLQQ---------------- 317
Query: 244 STSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANM 303
KGQ LEGT+ L GAF+ + G +G + SE S+ A +
Sbjct: 318 ----------------LEKGQILEGTISGLAPFGAFVDIGVGRDGLVHISELSNARVARV 361
Query: 304 MGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKED 335
+++VG +V VRVL + +++L+++ ED
Sbjct: 362 E--DAVKVGDKVQVRVLDVDPQSKRISLSLRLED 393
Score = 89.0 bits (219), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 110/229 (48%), Gaps = 20/229 (8%)
Query: 139 PVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEV 198
P + +DL PG G+V SI +G F+D G DGLVH+S +SD ++ +V +G V
Sbjct: 130 PRRVKDLAPGMELEGRVTSIALYGIFVDIGVGRDGLVHISEMSDTRIESPSDLVKIGDTV 189
Query: 199 KVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTT 258
KVR+ + RISLTMR ++++ SG R KP D++
Sbjct: 190 KVRVKSVEPDGRRISLTMR-------MKERGAEPRSG-------RGKKKPEVDYDKLAAL 235
Query: 259 KFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVR 318
+ G ++EGTV L G F+ + G++G + SE ++ +QVGQ + +
Sbjct: 236 RV--GDNVEGTVTGLAPFGVFVDIGVGKDGLVHVSELAEGRVEKAE--DVVQVGQTYTFK 291
Query: 319 VLRISR--GQVTLTMKKEDDVGSNLQLTQGVIHAATNPFVLAFRSNKDI 365
VL + +++L++++ QL +G I T + F + DI
Sbjct: 292 VLEVDAEGARISLSLRRAQRGQKLQQLEKGQILEGTISGLAPFGAFVDI 340
>gi|323447671|gb|EGB03584.1| hypothetical protein AURANDRAFT_72706 [Aureococcus anophagefferens]
Length = 328
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 113/221 (51%), Gaps = 30/221 (13%)
Query: 119 ASPTLAE--SRRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVH 176
A P +AE + + A KS+ P+ DL+ G + GK+ + +GAF+D GA +DGLVH
Sbjct: 39 AEPVVAEVAEEKPKRADKSKATPLA--DLVEGNEYAGKITGLAAYGAFVDIGAQSDGLVH 96
Query: 177 VSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGD 236
+S LS ++V DV S+V G +V VR+++ ++ ++SL+M+ G
Sbjct: 97 ISELSASYVDDVASVVKEGDDVTVRILKIDSGKKQLSLSMK---------------PEGA 141
Query: 237 KVRTTRRSTSKPGQKRDEMKTTKFVKGQD------LEGTVKNLTRSGAFISLPEGEEGFL 290
+ +R G ++ + + K QD + GTV+ + GAF+++ G +G +
Sbjct: 142 EAPPKKRGG---GGRQKKAGAEELRKYQDADPAEFISGTVRTVLEWGAFVNIAPGVDGLV 198
Query: 291 PTSEESDDGFANMMGGSSLQVGQEVSVRVLRISRGQVTLTM 331
S SD ++ + L VG EV VR++ + + TL +
Sbjct: 199 HISRVSDSRVEDLQ--AELSVGDEVKVRIIDVDLDKATLGL 237
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 50/76 (65%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K +D P +G VR++ +GAF++ DGLVH+SR+SD+ V+D+ + +SVG EVKV
Sbjct: 164 KYQDADPAEFISGTVRTVLEWGAFVNIAPGVDGLVHISRVSDSRVEDLQAELSVGDEVKV 223
Query: 201 RLIEANAETGRISLTM 216
R+I+ + + + L M
Sbjct: 224 RIIDVDLDKATLGLAM 239
>gi|258544890|ref|ZP_05705124.1| histidine triad domain-containing protein [Cardiobacterium hominis
ATCC 15826]
gi|258519810|gb|EEV88669.1| histidine triad domain-containing protein [Cardiobacterium hominis
ATCC 15826]
Length = 769
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 68/115 (59%), Gaps = 11/115 (9%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L+D +V+D IV G VKV+++
Sbjct: 655 DLQPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALADRYVQDPRDIVKAGDVVKVKVL 714
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTT 258
E +AE RI+LTMR D DATASG K R R +P QK+++M T
Sbjct: 715 EVDAERKRIALTMRLDD---------DATASGKKDRP--RGDKRPPQKQEKMTNT 758
>gi|148658063|ref|YP_001278268.1| RNA-binding S1 domain-containing protein [Roseiflexus sp. RS-1]
gi|148570173|gb|ABQ92318.1| RNA binding S1 domain protein [Roseiflexus sp. RS-1]
Length = 514
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 99/214 (46%), Gaps = 36/214 (16%)
Query: 124 AESRRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDN 183
AE R R +K E+ K L G G V + PFG F+D G DGLVHVS L++
Sbjct: 217 AEPRSGRGKKKPEVDYEKLAALRVGDNVEGTVTGMAPFGVFVDIGVGKDGLVHVSELAEG 276
Query: 184 FVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRR 243
V+ +V VGQ +++E +A RISL++R + KLQQ
Sbjct: 277 RVEKAEDVVQVGQTYTFKVLEVDAAGARISLSLRRAQRGQKLQQ---------------- 320
Query: 244 STSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANM 303
KGQ LEGT+ L GAF+ + G +G + SE S+ A +
Sbjct: 321 ----------------LEKGQILEGTISGLAPFGAFVDIGVGRDGLVHISELSNTHVARV 364
Query: 304 MGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKED 335
++VG V VRVL + +++L+++ ED
Sbjct: 365 E--DVVKVGDRVQVRVLDVDPQSKRISLSLRLED 396
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 112/241 (46%), Gaps = 34/241 (14%)
Query: 139 PVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEV 198
P + +DL PG G+V SI +G F+D G DGLVH+S +SD ++ +V +G V
Sbjct: 133 PRRVKDLAPGMELEGRVTSIALYGIFVDIGVGRDGLVHISEMSDTRIESPSDLVKIGDTV 192
Query: 199 KVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKP----GQKRDE 254
KVR+ + RISLTMR T+ +++P G+K+ E
Sbjct: 193 KVRVKSVEPDGRRISLTMR-----------------------TKERSAEPRSGRGKKKPE 229
Query: 255 MKTTKFVK---GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQV 311
+ K G ++EGTV + G F+ + G++G + SE ++ +QV
Sbjct: 230 VDYEKLAALRVGDNVEGTVTGMAPFGVFVDIGVGKDGLVHVSELAEGRVEKAE--DVVQV 287
Query: 312 GQEVSVRVLRI--SRGQVTLTMKKEDDVGSNLQLTQGVIHAATNPFVLAFRSNKDISSFL 369
GQ + +VL + + +++L++++ QL +G I T + F + DI
Sbjct: 288 GQTYTFKVLEVDAAGARISLSLRRAQRGQKLQQLEKGQILEGTISGLAPFGAFVDIGVGR 347
Query: 370 D 370
D
Sbjct: 348 D 348
>gi|414083663|ref|YP_006992371.1| 30S ribosomal protein S1 [Carnobacterium maltaromaticum LMA28]
gi|412997247|emb|CCO11056.1| 30S ribosomal protein S1 homolog [Carnobacterium maltaromaticum
LMA28]
Length = 402
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 106/218 (48%), Gaps = 40/218 (18%)
Query: 106 DVETSESSSIKSEASPTLAESRRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFI 165
++E SE+ I S + AE A+K M L+ G T TG V + FGAFI
Sbjct: 167 EIEPSENRLILSHKAVVEAEKE---VAKKEIMTK-----LVEGDTVTGTVARLTNFGAFI 218
Query: 166 DFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKL 225
D G DGLVH+S++S N VK G +++VG+EV+V+++ N ETGRISL++++
Sbjct: 219 DLGG-VDGLVHISQISYNHVKAPGDVLTVGEEVQVKILSINEETGRISLSIKD------- 270
Query: 226 QQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEG 285
T G P + +E G L G VK LT GAF+ + G
Sbjct: 271 ------TQPG------------PWENIEERAAV----GSTLSGIVKRLTSFGAFVEVYPG 308
Query: 286 EEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRIS 323
EG + S+ S + A L G E+ V+VL ++
Sbjct: 309 VEGLVHISQISHNHIATPH--EVLHEGDEIKVKVLEVN 344
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 55/93 (59%), Gaps = 2/93 (2%)
Query: 127 RRSRTARKSEMPPVKN--EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNF 184
R S + + ++ P +N E G+T +G V+ + FGAF++ +GLVH+S++S N
Sbjct: 263 RISLSIKDTQPGPWENIEERAAVGSTLSGIVKRLTSFGAFVEVYPGVEGLVHISQISHNH 322
Query: 185 VKDVGSIVSVGQEVKVRLIEANAETGRISLTMR 217
+ ++ G E+KV+++E N R+SL+++
Sbjct: 323 IATPHEVLHEGDEIKVKVLEVNPTDQRLSLSIK 355
>gi|392529403|ref|ZP_10276540.1| 30S ribosomal protein S1 [Carnobacterium maltaromaticum ATCC 35586]
Length = 402
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 106/218 (48%), Gaps = 40/218 (18%)
Query: 106 DVETSESSSIKSEASPTLAESRRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFI 165
++E SE+ I S + AE A+K M L+ G T TG V + FGAFI
Sbjct: 167 EIEPSENRLILSHKAVVEAEKE---VAKKEIMTK-----LVEGDTVTGTVARLTNFGAFI 218
Query: 166 DFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKL 225
D G DGLVH+S++S N VK G +++VG+EV+V+++ N ETGRISL++++
Sbjct: 219 DLGG-VDGLVHISQISYNHVKAPGDVLTVGEEVQVKILSINEETGRISLSIKD------- 270
Query: 226 QQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEG 285
T G P + +E G L G VK LT GAF+ + G
Sbjct: 271 ------TQPG------------PWENIEERAAV----GSTLSGIVKRLTSFGAFVEVYPG 308
Query: 286 EEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRIS 323
EG + S+ S + A L G E+ V+VL ++
Sbjct: 309 VEGLVHISQISHNHIATPH--EVLHEGDEIKVKVLEVN 344
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 55/93 (59%), Gaps = 2/93 (2%)
Query: 127 RRSRTARKSEMPPVKN--EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNF 184
R S + + ++ P +N E G+T +G V+ + FGAF++ +GLVH+S++S N
Sbjct: 263 RISLSIKDTQPGPWENIEERAAVGSTLSGIVKRLTSFGAFVEVYPGVEGLVHISQISHNH 322
Query: 185 VKDVGSIVSVGQEVKVRLIEANAETGRISLTMR 217
+ ++ G E+KV+++E N R+SL+++
Sbjct: 323 IATPHEVLHEGDEIKVKVLEVNPTDQRLSLSIK 355
>gi|377820976|ref|YP_004977347.1| S1 RNA-binding domain-containing protein [Burkholderia sp. YI23]
gi|357935811|gb|AET89370.1| S1 RNA-binding domain-containing protein [Burkholderia sp. YI23]
Length = 775
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 65/113 (57%), Gaps = 2/113 (1%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL+PG G V ++ FGAF+D G DGLVHVS LS F+KD +V GQ VKV
Sbjct: 649 KISDLVPGMILEGVVTNVAAFGAFVDIGVHQDGLVHVSALSTKFIKDPHEVVKAGQVVKV 708
Query: 201 RLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRD 253
+++E + + RISLTMR DD++ + G RR ++P Q+R+
Sbjct: 709 KVLETDVKRQRISLTMRLDDDLAPASSNAGSQPRG--ASQDRRRDARPNQRRE 759
Score = 42.4 bits (98), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 15/114 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKF----------VKGQDLEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT F V G LEG V N+ GAF+ + +
Sbjct: 620 VRDILAELEKPGRDPRPEFKTATFKEGIEKISDLVPGMILEGVVTNVAAFGAFVDIGVHQ 679
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKEDDVG 338
+G + S S + ++ GQ V V+VL + R +++LTM+ +DD+
Sbjct: 680 DGLVHVSALSTKFIKDPH--EVVKAGQVVKVKVLETDVKRQRISLTMRLDDDLA 731
>gi|452821516|gb|EME28545.1| 30S ribosomal protein S1 [Galdieria sulphuraria]
Length = 301
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 104/196 (53%), Gaps = 21/196 (10%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E L G + G V + P+GAF++ G+ GL+HVS++S+NF+ D ++SVGQ V+VR+
Sbjct: 98 EALKIGQVYEGTVEKLMPYGAFVNIGSNLSGLLHVSQISENFLTDPAEMLSVGQAVQVRV 157
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
I+ + E + +L+M+ K + + + +R + + + R E+K +F K
Sbjct: 158 IKLDPEKRQFALSMKSP---RKRENSRSGRDGSRRRDFSRNYSQRDEELRKELK--EFSK 212
Query: 263 GQD----LEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVR 318
+ L G V ++T GAF+ ++G L SE S D LQ+G EV VR
Sbjct: 213 TANPKEFLNGRVVSITNLGAFVDFGGPKDGLLFKSEMSRD----------LQIGDEVQVR 262
Query: 319 VLRI--SRGQVTLTMK 332
+ RI +R + L+MK
Sbjct: 263 ITRINLARNYLNLSMK 278
>gi|326203351|ref|ZP_08193216.1| Tex-like protein [Clostridium papyrosolvens DSM 2782]
gi|325986609|gb|EGD47440.1| Tex-like protein [Clostridium papyrosolvens DSM 2782]
Length = 718
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 54/76 (71%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL G TG VR++ FGAF+D G DGLVH+S+L+D FVK+ +V+VG VKV++
Sbjct: 641 EDLKAGMILTGTVRNVADFGAFVDIGVHQDGLVHISQLADKFVKNPMDVVAVGDIVKVKV 700
Query: 203 IEANAETGRISLTMRE 218
IE + E RISLTMRE
Sbjct: 701 IEVDVERKRISLTMRE 716
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP D + G L GTV+N+ GAF+ + ++G + S+ +D
Sbjct: 622 RDPRDELPKPMLHSDVLNMEDLKAGMILTGTVRNVADFGAFVDIGVHQDGLVHISQLADK 681
Query: 299 GFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMK 332
N M + VG V V+V+ + R +++LTM+
Sbjct: 682 FVKNPM--DVVAVGDIVKVKVIEVDVERKRISLTMR 715
>gi|319944389|ref|ZP_08018663.1| YhgF like protein [Lautropia mirabilis ATCC 51599]
gi|319742350|gb|EFV94763.1| YhgF like protein [Lautropia mirabilis ATCC 51599]
Length = 790
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 65/117 (55%), Gaps = 5/117 (4%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K EDL PG T G V ++ FGAF+D G DGLVH+S LSD FVKD +V G VKV
Sbjct: 653 KLEDLRPGMTLEGVVTNVANFGAFVDIGVHQDGLVHISALSDRFVKDPHEVVKTGDVVKV 712
Query: 201 RLIEANAETGRISLTMRESDD-----ISKLQQQKDATASGDKVRTTRRSTSKPGQKR 252
+++E + R++LTMR SD+ + + +G R RR ++PG R
Sbjct: 713 KVLEVDVRRQRVALTMRMSDEPGAERGAGGRPAGGTRPAGGNARGPRRDGARPGSSR 769
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 15/106 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E +T F +G D LEG V N+ GAF+ + ++G + S
Sbjct: 633 KPGRDPRPEFRTAAFKEGVDKLEDLRPGMTLEGVVTNVANFGAFVDIGVHQDGLVHISAL 692
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKEDDVGS 339
SD + ++ G V V+VL + R +V LTM+ D+ G+
Sbjct: 693 SDRFVKDPH--EVVKTGDVVKVKVLEVDVRRQRVALTMRMSDEPGA 736
>gi|376259753|ref|YP_005146473.1| transcriptional accessory protein [Clostridium sp. BNL1100]
gi|373943747|gb|AEY64668.1| transcriptional accessory protein [Clostridium sp. BNL1100]
Length = 718
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 54/76 (71%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL G TG VR++ FGAF+D G DGLVH+S+L+D FVK+ +V+VG VKV++
Sbjct: 641 EDLKAGMILTGTVRNVADFGAFVDIGVHQDGLVHISQLADKFVKNPMDVVAVGDIVKVKV 700
Query: 203 IEANAETGRISLTMRE 218
+E + E RISLTMRE
Sbjct: 701 LEVDVERKRISLTMRE 716
Score = 42.7 bits (99), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP D + G L GTV+N+ GAF+ + ++G + S+ +D
Sbjct: 622 RDPRDELPKPMLHSDVLNMEDLKAGMILTGTVRNVADFGAFVDIGVHQDGLVHISQLADK 681
Query: 299 GFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMK 332
N M + VG V V+VL + R +++LTM+
Sbjct: 682 FVKNPM--DVVAVGDIVKVKVLEVDVERKRISLTMR 715
>gi|329928970|ref|ZP_08282780.1| Tex-like protein N-terminal domain protein [Paenibacillus sp. HGF5]
gi|328937222|gb|EGG33649.1| Tex-like protein N-terminal domain protein [Paenibacillus sp. HGF5]
Length = 731
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 80/140 (57%), Gaps = 14/140 (10%)
Query: 96 DSAGASDIPS--DVETSESSSIKSEAS-PTLAESRRS--RTAR--KSEMP-PV------K 141
D G+ ++ D + ES ++K E PTL + S R R + E+P P+ K
Sbjct: 590 DKLGSKELAGLLDAQQPESLAVKLEVGVPTLRDILDSLQRPGRDPREELPLPIFRQDVLK 649
Query: 142 NEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVR 201
EDL+PG G VR++ FGAF+D G +DGLVH+S+LSD FVK +VSVG V V
Sbjct: 650 IEDLVPGMELQGTVRNVIDFGAFVDIGIKSDGLVHISQLSDGFVKHPMDVVSVGDNVTVW 709
Query: 202 LIEANAETGRISLTMRESDD 221
++ + + GR+ LTMR+ D
Sbjct: 710 VLNVDLKKGRVGLTMRKPKD 729
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 4/102 (3%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R P ++D +K V G +L+GTV+N+ GAF+ + +G + S+ SD
Sbjct: 632 RDPREELPLPIFRQDVLKIEDLVPGMELQGTVRNVIDFGAFVDIGIKSDGLVHISQLSDG 691
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDDVG 338
+ M S VG V+V VL + +G+V LTM+K D G
Sbjct: 692 FVKHPMDVVS--VGDNVTVWVLNVDLKKGRVGLTMRKPKDQG 731
>gi|374295039|ref|YP_005045230.1| transcriptional accessory protein [Clostridium clariflavum DSM
19732]
gi|359824533|gb|AEV67306.1| transcriptional accessory protein [Clostridium clariflavum DSM
19732]
Length = 717
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 54/76 (71%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG TG VR++ FGAF+D G DGLVH+S LSD +VK+ +VSVG VKVR+
Sbjct: 641 EDLKPGMVLTGTVRNVADFGAFVDIGVHQDGLVHISELSDRYVKNPMEVVSVGDIVKVRI 700
Query: 203 IEANAETGRISLTMRE 218
++ + + RISL+M+E
Sbjct: 701 LDVDVKRKRISLSMKE 716
Score = 43.9 bits (102), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP D + G L GTV+N+ GAF+ + ++G + SE SD
Sbjct: 622 RDPRDELPKPVLLTDVLHIEDLKPGMVLTGTVRNVADFGAFVDIGVHQDGLVHISELSDR 681
Query: 299 GFANMMGGSSLQVGQEVSVRVL--RISRGQVTLTMK 332
N M + VG V VR+L + R +++L+MK
Sbjct: 682 YVKNPM--EVVSVGDIVKVRILDVDVKRKRISLSMK 715
>gi|261409036|ref|YP_003245277.1| Tex-like protein [Paenibacillus sp. Y412MC10]
gi|261285499|gb|ACX67470.1| Tex-like protein protein-like protein [Paenibacillus sp. Y412MC10]
Length = 740
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 75/128 (58%), Gaps = 12/128 (9%)
Query: 106 DVETSESSSIKSEAS-PTLAESRRS--RTAR--KSEMP-PV------KNEDLIPGATFTG 153
D + ES ++K E PTL + S R R + E+P P+ K EDL+PG G
Sbjct: 609 DAQQPESLAVKLEVGVPTLRDILDSLQRPGRDPREELPLPIFRQDVLKIEDLVPGMELQG 668
Query: 154 KVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRIS 213
VR++ FGAF+D G +DGLVH+S+LSD FVK +VSVG V V ++ + + GR+
Sbjct: 669 TVRNVIDFGAFVDIGIKSDGLVHISQLSDGFVKHPMDVVSVGDNVTVWVLNVDLKKGRVG 728
Query: 214 LTMRESDD 221
LTMR+ D
Sbjct: 729 LTMRKPKD 736
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 4/104 (3%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R P ++D +K V G +L+GTV+N+ GAF+ + +G + S+ SD
Sbjct: 639 RDPREELPLPIFRQDVLKIEDLVPGMELQGTVRNVIDFGAFVDIGIKSDGLVHISQLSDG 698
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDDVGSN 340
+ M S VG V+V VL + +G+V LTM+K D GSN
Sbjct: 699 FVKHPMDVVS--VGDNVTVWVLNVDLKKGRVGLTMRKPKDQGSN 740
>gi|311104858|ref|YP_003977711.1| protein tex [Achromobacter xylosoxidans A8]
gi|310759547|gb|ADP14996.1| protein tex [Achromobacter xylosoxidans A8]
Length = 791
Score = 89.0 bits (219), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 60/96 (62%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L++ FVKD +V VGQ V V+++
Sbjct: 666 DLYPGMVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVSVKVL 725
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVR 239
E +A R++LTMR +D + ++ DA GD+ R
Sbjct: 726 EVDAARKRVALTMRLNDTAAPARRSADAPKGGDRNR 761
Score = 42.7 bits (99), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 15/111 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT +F +G + LEG V N+ GAF+ + +
Sbjct: 634 VRDIFAELEKPGRDPRPEFKTAQFKEGVETLNDLYPGMVLEGVVTNVANFGAFVDIGVHQ 693
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKED 335
+G + S ++ + ++VGQ VSV+VL + +R +V LTM+ D
Sbjct: 694 DGLVHISALAEKFVKDPR--DVVRVGQTVSVKVLEVDAARKRVALTMRLND 742
>gi|421482921|ref|ZP_15930501.1| transcription accessory protein [Achromobacter piechaudii HLE]
gi|400199232|gb|EJO32188.1| transcription accessory protein [Achromobacter piechaudii HLE]
Length = 791
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 60/96 (62%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L++ FVKD +V VGQ V V+++
Sbjct: 666 DLYPGMVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVSVKVL 725
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVR 239
E +A R++LTMR +D + ++ DA GD+ R
Sbjct: 726 EVDAARKRVALTMRLNDTAAPARRSGDAPKGGDRPR 761
Score = 43.1 bits (100), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 15/111 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT +F +G + LEG V N+ GAF+ + +
Sbjct: 634 VRDIFAELEKPGRDPRPEFKTAQFKEGVETLNDLYPGMVLEGVVTNVANFGAFVDIGVHQ 693
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKED 335
+G + S ++ + ++VGQ VSV+VL + +R +V LTM+ D
Sbjct: 694 DGLVHISALAEKFVKDPR--DVVRVGQTVSVKVLEVDAARKRVALTMRLND 742
>gi|149926155|ref|ZP_01914417.1| transcription accessory protein, TEX [Limnobacter sp. MED105]
gi|149824973|gb|EDM84185.1| transcription accessory protein, TEX [Limnobacter sp. MED105]
Length = 787
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 54/81 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG T G V ++ FGAF+D G DGLVHVS LS+ FVKD ++V GQ VKV+++
Sbjct: 653 DLKPGMTLEGVVTNVANFGAFVDIGVHQDGLVHVSALSNTFVKDPHAVVKTGQIVKVKVL 712
Query: 204 EANAETGRISLTMRESDDISK 224
E + RISLTM+ DD+ K
Sbjct: 713 EVDIPRKRISLTMKMGDDVPK 733
Score = 42.7 bits (99), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 15/104 (14%)
Query: 247 KPGQK-RDEMKTTKF---------VK-GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R KT KF +K G LEG V N+ GAF+ + ++G + S
Sbjct: 630 KPGRDPRPSFKTAKFDDKVHTMADLKPGMTLEGVVTNVANFGAFVDIGVHQDGLVHVSAL 689
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKEDDV 337
S+ + + ++ GQ V V+VL I R +++LTMK DDV
Sbjct: 690 SNTFVKDPH--AVVKTGQIVKVKVLEVDIPRKRISLTMKMGDDV 731
>gi|350543792|ref|ZP_08913481.1| Transcription accessory protein (S1 RNA-binding domain) [Candidatus
Burkholderia kirkii UZHbot1]
gi|350528412|emb|CCD35678.1| Transcription accessory protein (S1 RNA-binding domain) [Candidatus
Burkholderia kirkii UZHbot1]
Length = 770
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 58/96 (60%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVHVS +S FVKD +V GQ VKV+++
Sbjct: 652 DLVPGMILEGVVANVAAFGAFVDIGVHQDGLVHVSAMSTKFVKDPHEVVKAGQVVKVKVL 711
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVR 239
E + + RISLTMR DD + +A SG + R
Sbjct: 712 ETDVKRQRISLTMRLDDDFAPASSGAEAARSGGQDR 747
Score = 42.4 bits (98), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 15/112 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKF----------VKGQDLEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT F V G LEG V N+ GAF+ + +
Sbjct: 620 VRDILSELEKPGRDPRPEFKTATFKEGIERISDLVPGMILEGVVANVAAFGAFVDIGVHQ 679
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKEDD 336
+G + S S + ++ GQ V V+VL + R +++LTM+ +DD
Sbjct: 680 DGLVHVSAMSTKFVKDPH--EVVKAGQVVKVKVLETDVKRQRISLTMRLDDD 729
>gi|442806099|ref|YP_007374248.1| RNA-binding S1 domain-containing protein [Clostridium stercorarium
subsp. stercorarium DSM 8532]
gi|442741949|gb|AGC69638.1| RNA-binding S1 domain-containing protein [Clostridium stercorarium
subsp. stercorarium DSM 8532]
Length = 715
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 59/91 (64%), Gaps = 7/91 (7%)
Query: 134 KSEMPP-------VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVK 186
+ E+PP + +DL PG TG VR++ FGAF+D G DGLVH+S+LSD FVK
Sbjct: 623 RDELPPPMLRRDILDIKDLKPGMVLTGTVRNVADFGAFVDIGVHQDGLVHISQLSDKFVK 682
Query: 187 DVGSIVSVGQEVKVRLIEANAETGRISLTMR 217
+ +VSVG V V++++ + E RISLTMR
Sbjct: 683 NPLDVVSVGDIVTVKVLDVDIERKRISLTMR 713
Score = 43.9 bits (102), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R P +RD + G L GTV+N+ GAF+ + ++G + S+ SD
Sbjct: 620 RDPRDELPPPMLRRDILDIKDLKPGMVLTGTVRNVADFGAFVDIGVHQDGLVHISQLSDK 679
Query: 299 GFANMMGGSSLQVGQEVSVRVL--RISRGQVTLTMK 332
N + S VG V+V+VL I R +++LTM+
Sbjct: 680 FVKNPLDVVS--VGDIVTVKVLDVDIERKRISLTMR 713
>gi|315649164|ref|ZP_07902254.1| Tex-like protein protein-like protein [Paenibacillus vortex V453]
gi|315275383|gb|EFU38741.1| Tex-like protein protein-like protein [Paenibacillus vortex V453]
Length = 737
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 80/140 (57%), Gaps = 14/140 (10%)
Query: 96 DSAGASDIPS--DVETSESSSIKSEAS-PTLAESRRS--RTAR--KSEMP-PV------K 141
D G+ ++ D + E+ ++K E PTL + S R R + E+P P+ K
Sbjct: 597 DKLGSKELAELLDAQQPENLAVKLEVGVPTLRDILDSLQRPGRDPREELPLPIFRQDVLK 656
Query: 142 NEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVR 201
EDL+PG G VR++ FGAF+D G +DGLVH+S+LSD FVK +VSVG V V
Sbjct: 657 IEDLLPGMELQGTVRNVIDFGAFVDIGIKSDGLVHISQLSDGFVKHPMDVVSVGDNVTVW 716
Query: 202 LIEANAETGRISLTMRESDD 221
++ + + GR+ LTMR+ D
Sbjct: 717 VLNVDLKKGRVGLTMRKPKD 736
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R P ++D +K + G +L+GTV+N+ GAF+ + +G + S+ SD
Sbjct: 639 RDPREELPLPIFRQDVLKIEDLLPGMELQGTVRNVIDFGAFVDIGIKSDGLVHISQLSDG 698
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDD 336
+ M S VG V+V VL + +G+V LTM+K D
Sbjct: 699 FVKHPMDVVS--VGDNVTVWVLNVDLKKGRVGLTMRKPKD 736
>gi|430749252|ref|YP_007212160.1| transcriptional accessory protein [Thermobacillus composti KWC4]
gi|430733217|gb|AGA57162.1| transcriptional accessory protein [Thermobacillus composti KWC4]
Length = 763
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 58/91 (63%), Gaps = 7/91 (7%)
Query: 134 KSEMPP-------VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVK 186
+ E+PP ++ EDL PG G VR++ FGAF+D G DGLVH+S++SD +VK
Sbjct: 670 REELPPPVFRTDVLRIEDLAPGMELKGTVRNVIDFGAFVDIGVKNDGLVHISQMSDRYVK 729
Query: 187 DVGSIVSVGQEVKVRLIEANAETGRISLTMR 217
+VSVG V VR++ + + GR+SLTMR
Sbjct: 730 HPLDVVSVGDTVTVRVLSVDVKRGRVSLTMR 760
Score = 48.1 bits (113), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R P + D ++ G +L+GTV+N+ GAF+ + +G + S+ SD
Sbjct: 667 RDPREELPPPVFRTDVLRIEDLAPGMELKGTVRNVIDFGAFVDIGVKNDGLVHISQMSDR 726
Query: 299 GFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMK 332
+ + + VG V+VRVL + RG+V+LTM+
Sbjct: 727 YVKHPL--DVVSVGDTVTVRVLSVDVKRGRVSLTMR 760
>gi|413962520|ref|ZP_11401747.1| S1 RNA-binding domain-containing protein [Burkholderia sp. SJ98]
gi|413928352|gb|EKS67640.1| S1 RNA-binding domain-containing protein [Burkholderia sp. SJ98]
Length = 778
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL+PG G V ++ FGAF+D G DGLVHVS +S F+KD +V GQ VKV
Sbjct: 649 KISDLVPGMILEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQVVKV 708
Query: 201 RLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTT-RRSTSKPGQKRD 253
+++E + + RI+LTMR DD + A + RRS +P Q+R+
Sbjct: 709 KVLEVDVKRQRIALTMRLDDDFAPASSGAGGGAGSQRGGGQDRRSGQRPQQRRE 762
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 15/112 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKF----------VKGQDLEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT F V G LEG V N+ GAF+ + +
Sbjct: 620 VRDILAELEKPGRDPRPEFKTATFKEGIEKISDLVPGMILEGVVTNVAAFGAFVDIGVHQ 679
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKEDD 336
+G + S S + ++ GQ V V+VL + R ++ LTM+ +DD
Sbjct: 680 DGLVHVSAMSTKFIKD--PHEVVKAGQVVKVKVLEVDVKRQRIALTMRLDDD 729
>gi|358637224|dbj|BAL24521.1| hypothetical protein AZKH_2210 [Azoarcus sp. KH32C]
Length = 776
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 69/116 (59%), Gaps = 11/116 (9%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S L+D FVKD S+V GQ VKV++
Sbjct: 645 KDLAPGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALADRFVKDPHSVVKAGQVVKVKV 704
Query: 203 IEANAETGRISLTMRESDDISKLQ----QQKDATASGDKVRTTRRSTSKPGQKRDE 254
+E + RI+LTMR D+ + + QQ+D A GD+ R S P +RDE
Sbjct: 705 LEVDLPRQRIALTMRMGDEPASARPAQAQQRDG-ARGDR----RPSGGNP--RRDE 753
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 252 RDEMKTTK-FVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQ 310
RD ++T K G LEG V N+T GAF+ + ++G + S +D + S ++
Sbjct: 638 RDGVETLKDLAPGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALADRFVKD--PHSVVK 695
Query: 311 VGQEVSVRVLRIS--RGQVTLTMKKEDDVGS 339
GQ V V+VL + R ++ LTM+ D+ S
Sbjct: 696 AGQVVKVKVLEVDLPRQRIALTMRMGDEPAS 726
>gi|302798376|ref|XP_002980948.1| hypothetical protein SELMODRAFT_420490 [Selaginella moellendorffii]
gi|300151487|gb|EFJ18133.1| hypothetical protein SELMODRAFT_420490 [Selaginella moellendorffii]
Length = 452
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 69/115 (60%), Gaps = 3/115 (2%)
Query: 258 TKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSE-ESDDGFANMMGGSSLQVGQEVS 316
T + KGQ + G VKN TR G F+ LP +EGFL +E ES + ++VGQE+
Sbjct: 266 TSYQKGQVVSGVVKNYTRRGCFVQLPGNQEGFLHANEIESSREQEPTPVENLVKVGQELK 325
Query: 317 VRVLRISRGQVTLTMKKEDDVGSNLQLTQGVIHAATNPFVLAFRSNKDISSFLDE 371
V+VLRI G++ LTMK+E D+ +L + V ATNPF LAFR N I +L E
Sbjct: 326 VKVLRIIDGRINLTMKEEVDLKKIKELNENVF--ATNPFELAFRKNPVIRGYLKE 378
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 135 SEMPP----VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGS 190
S PP VK+E+L+PG TG V++I FGAFID A DGL+H+S++SD FV++V
Sbjct: 67 SRAPPRSFGVKDEELVPGKVLTGSVKAIMTFGAFIDLDARFDGLLHISKISDRFVQNVED 126
Query: 191 IVSVGQEVKVRLIEANAETGRISL 214
+++VGQ+V+V + + RI L
Sbjct: 127 VLTVGQQVQVEIESVDLPKRRIQL 150
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKD---VGSIVSVGQEVKVRLIE 204
G +G V++ G F+ +G +H + + + ++ V ++V VGQE+KV+++
Sbjct: 271 GQVVSGVVKNYTRRGCFVQLPGNQEGFLHANEIESSREQEPTPVENLVKVGQELKVKVLR 330
Query: 205 ANAETGRISLTMRESDDISKLQQ 227
GRI+LTM+E D+ K+++
Sbjct: 331 II--DGRINLTMKEEVDLKKIKE 351
>gi|407975638|ref|ZP_11156542.1| RNA binding S1 [Nitratireductor indicus C115]
gi|407428858|gb|EKF41538.1| RNA binding S1 [Nitratireductor indicus C115]
Length = 776
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 56/87 (64%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG + G V ++ FGAF+D G DGLVHVS+L+D FVKD +V G VKVR+
Sbjct: 645 KDLKPGMSLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDAHEVVKAGDVVKVRV 704
Query: 203 IEANAETGRISLTMRESDDISKLQQQK 229
+E + + RISL+MR+ D QQ+
Sbjct: 705 LEVDVKRKRISLSMRKDGDAGGRPQQQ 731
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 15/118 (12%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R +T F +G D LEGTV N+ GAF+ + +
Sbjct: 614 VRDIISELEKPGRDPRPAFRTATFAEGIDDIKDLKPGMSLEGTVTNVAAFGAFVDIGVHQ 673
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKEDDVGSNLQ 342
+G + S+ +D + ++ G V VRVL + R +++L+M+K+ D G Q
Sbjct: 674 DGLVHVSQLADRFVKD--AHEVVKAGDVVKVRVLEVDVKRKRISLSMRKDGDAGGRPQ 729
>gi|293604133|ref|ZP_06686541.1| YhgF like protein [Achromobacter piechaudii ATCC 43553]
gi|292817358|gb|EFF76431.1| YhgF like protein [Achromobacter piechaudii ATCC 43553]
Length = 792
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 59/96 (61%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L++ FVKD +V VGQ V V+++
Sbjct: 666 DLYPGMVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVSVKVL 725
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVR 239
E + R++LTMR +D + ++ DA GD+ R
Sbjct: 726 EVDVARKRVALTMRLNDTAAPARRSGDAPKGGDRPR 761
Score = 43.1 bits (100), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 15/111 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT +F +G + LEG V N+ GAF+ + +
Sbjct: 634 VRDIFAELEKPGRDPRPEFKTAQFKEGVETLNDLYPGMVLEGVVTNVANFGAFVDIGVHQ 693
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKED 335
+G + S ++ + ++VGQ VSV+VL ++R +V LTM+ D
Sbjct: 694 DGLVHISALAEKFVKDPR--DVVRVGQTVSVKVLEVDVARKRVALTMRLND 742
>gi|359797387|ref|ZP_09299971.1| transcription accessory protein [Achromobacter arsenitoxydans SY8]
gi|359364498|gb|EHK66211.1| transcription accessory protein [Achromobacter arsenitoxydans SY8]
Length = 791
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 59/96 (61%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L++ FVKD +V VGQ V V+++
Sbjct: 666 DLYPGMVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVSVKVL 725
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVR 239
E + R++LTMR +D + ++ DA GD+ R
Sbjct: 726 EVDVARKRVALTMRLNDTAAPARRSGDAPKGGDRPR 761
Score = 42.7 bits (99), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 15/102 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT +F +G + LEG V N+ GAF+ + ++G + S
Sbjct: 643 KPGRDPRPEFKTAQFKEGVETLNDLYPGMVLEGVVTNVANFGAFVDIGVHQDGLVHISAL 702
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKED 335
++ + ++VGQ VSV+VL ++R +V LTM+ D
Sbjct: 703 AEKFVKDPR--DVVRVGQTVSVKVLEVDVARKRVALTMRLND 742
>gi|304408482|ref|ZP_07390125.1| Tex-like protein [Paenibacillus curdlanolyticus YK9]
gi|304342541|gb|EFM08392.1| Tex-like protein [Paenibacillus curdlanolyticus YK9]
Length = 742
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 59/94 (62%), Gaps = 7/94 (7%)
Query: 134 KSEMPP-------VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVK 186
+ E+PP ++ EDL PG G VR++ FGAF+D G DGLVH+SRLS FVK
Sbjct: 649 REELPPPAFRTDVLQIEDLKPGMELQGTVRNVIDFGAFVDIGIKNDGLVHISRLSTKFVK 708
Query: 187 DVGSIVSVGQEVKVRLIEANAETGRISLTMRESD 220
+VSVG V V ++EA+ + GR+SLTM + D
Sbjct: 709 HPTDVVSVGDAVTVWVLEADLKKGRVSLTMVKPD 742
Score = 38.9 bits (89), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R P + D ++ G +L+GTV+N+ GAF+ + +G + S S
Sbjct: 646 RDPREELPPPAFRTDVLQIEDLKPGMELQGTVRNVIDFGAFVDIGIKNDGLVHISRLSTK 705
Query: 299 GFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKED 335
+ + VG V+V VL + +G+V+LTM K D
Sbjct: 706 FVKHPT--DVVSVGDAVTVWVLEADLKKGRVSLTMVKPD 742
>gi|220927810|ref|YP_002504719.1| RNA binding S1 domain-containing protein [Clostridium
cellulolyticum H10]
gi|219998138|gb|ACL74739.1| RNA binding S1 domain protein [Clostridium cellulolyticum H10]
Length = 718
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 54/76 (71%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL G TG VR++ FGAF+D G DGLVH+S+L+D +VK+ +V+VG VKV++
Sbjct: 641 EDLKQGMILTGTVRNVADFGAFVDIGVHQDGLVHISQLADKYVKNPMDVVAVGDIVKVKI 700
Query: 203 IEANAETGRISLTMRE 218
+E + E RISLTM+E
Sbjct: 701 LEVDVERKRISLTMKE 716
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP D + +G L GTV+N+ GAF+ + ++G + S+ +D
Sbjct: 622 RDPRDELPKPMLHSDVLHMEDLKQGMILTGTVRNVADFGAFVDIGVHQDGLVHISQLADK 681
Query: 299 GFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMK 332
N M + VG V V++L + R +++LTMK
Sbjct: 682 YVKNPM--DVVAVGDIVKVKILEVDVERKRISLTMK 715
>gi|125974456|ref|YP_001038366.1| RNA binding S1 [Clostridium thermocellum ATCC 27405]
gi|281418982|ref|ZP_06250000.1| Tex-like protein-like protein [Clostridium thermocellum JW20]
gi|125714681|gb|ABN53173.1| Tex-like protein-like protein [Clostridium thermocellum ATCC 27405]
gi|281407439|gb|EFB37699.1| Tex-like protein-like protein [Clostridium thermocellum JW20]
Length = 718
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 52/75 (69%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG TG VR++ FGAF+D G DGLVH+S LSD +VK +VSVG VKVR+
Sbjct: 641 EDLRPGMILTGTVRNVADFGAFVDVGVHQDGLVHISELSDKYVKSPMDVVSVGDIVKVRI 700
Query: 203 IEANAETGRISLTMR 217
++ + E RIS++M+
Sbjct: 701 LDVDVERKRISMSMK 715
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP D + G L GTV+N+ GAF+ + ++G + SE SD
Sbjct: 622 RDPRDELPKPMLLTDVLHLEDLRPGMILTGTVRNVADFGAFVDVGVHQDGLVHISELSDK 681
Query: 299 GFANMMGGSSLQVGQEVSVRVL--RISRGQVTLTMK 332
+ M S VG V VR+L + R +++++MK
Sbjct: 682 YVKSPMDVVS--VGDIVKVRILDVDVERKRISMSMK 715
>gi|256005189|ref|ZP_05430157.1| RNA binding S1 domain protein [Clostridium thermocellum DSM 2360]
gi|385779912|ref|YP_005689077.1| Tex-like protein [Clostridium thermocellum DSM 1313]
gi|419722063|ref|ZP_14249213.1| Tex-like protein [Clostridium thermocellum AD2]
gi|419726105|ref|ZP_14253129.1| Tex-like protein [Clostridium thermocellum YS]
gi|255990843|gb|EEU00957.1| RNA binding S1 domain protein [Clostridium thermocellum DSM 2360]
gi|316941592|gb|ADU75626.1| Tex-like protein [Clostridium thermocellum DSM 1313]
gi|380770501|gb|EIC04397.1| Tex-like protein [Clostridium thermocellum YS]
gi|380781914|gb|EIC11562.1| Tex-like protein [Clostridium thermocellum AD2]
Length = 718
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 52/75 (69%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG TG VR++ FGAF+D G DGLVH+S LSD +VK +VSVG VKVR+
Sbjct: 641 EDLRPGMILTGTVRNVADFGAFVDVGVHQDGLVHISELSDKYVKSPMDVVSVGDIVKVRI 700
Query: 203 IEANAETGRISLTMR 217
++ + E RIS++M+
Sbjct: 701 LDVDVERKRISMSMK 715
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP D + G L GTV+N+ GAF+ + ++G + SE SD
Sbjct: 622 RDPRDELPKPMLLTDVLHLEDLRPGMILTGTVRNVADFGAFVDVGVHQDGLVHISELSDK 681
Query: 299 GFANMMGGSSLQVGQEVSVRVL--RISRGQVTLTMK 332
+ M S VG V VR+L + R +++++MK
Sbjct: 682 YVKSPMDVVS--VGDIVKVRILDVDVERKRISMSMK 715
>gi|390568837|ref|ZP_10249129.1| RNA-binding S1 domain-containing protein [Burkholderia terrae
BS001]
gi|420256804|ref|ZP_14759624.1| transcriptional accessory protein [Burkholderia sp. BT03]
gi|389939186|gb|EIN01023.1| RNA-binding S1 domain-containing protein [Burkholderia terrae
BS001]
gi|398042518|gb|EJL35523.1| transcriptional accessory protein [Burkholderia sp. BT03]
Length = 778
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 53/83 (63%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAFID G DGLVHVS +S F+KD +V GQ VKV
Sbjct: 649 KISDLAPGMVLEGVVTNVAAFGAFIDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQIVKV 708
Query: 201 RLIEANAETGRISLTMRESDDIS 223
+++E + + RISLTMR DD++
Sbjct: 709 KVLEVDVKRQRISLTMRMDDDVA 731
Score = 44.3 bits (103), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT F +G + LEG V N+ GAFI + +
Sbjct: 620 VRDILSELEKPGRDPRPEFKTATFREGVEKISDLAPGMVLEGVVTNVAAFGAFIDIGVHQ 679
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKEDDVGS 339
+G + S S + ++ GQ V V+VL + R +++LTM+ +DDV +
Sbjct: 680 DGLVHVSAMSTKFIKD--PHEVVKAGQIVKVKVLEVDVKRQRISLTMRMDDDVAA 732
>gi|354585236|ref|ZP_09004125.1| Tex-like protein [Paenibacillus lactis 154]
gi|353188962|gb|EHB54477.1| Tex-like protein [Paenibacillus lactis 154]
Length = 737
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 55/82 (67%)
Query: 140 VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
+K EDL+PG G VR++ FGAF+D G +DGLVH+S+LSD +VK +VSVG V
Sbjct: 655 LKIEDLVPGMELQGTVRNVIDFGAFVDIGIKSDGLVHISQLSDGYVKHPMDVVSVGDNVT 714
Query: 200 VRLIEANAETGRISLTMRESDD 221
V ++ + + GR+ LTMR+ D
Sbjct: 715 VWVLNVDLKKGRVGLTMRKPKD 736
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R +P + D +K V G +L+GTV+N+ GAF+ + +G + S+ SD
Sbjct: 639 RDPREELPQPIFRHDVLKIEDLVPGMELQGTVRNVIDFGAFVDIGIKSDGLVHISQLSDG 698
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDD 336
+ M S VG V+V VL + +G+V LTM+K D
Sbjct: 699 YVKHPMDVVS--VGDNVTVWVLNVDLKKGRVGLTMRKPKD 736
>gi|332283688|ref|YP_004415599.1| transcription accessory protein [Pusillimonas sp. T7-7]
gi|330427641|gb|AEC18975.1| transcription accessory protein [Pusillimonas sp. T7-7]
Length = 804
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 63/109 (57%), Gaps = 2/109 (1%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL G G V ++ FGAF+D G DGLVH+S LSD FVKD +V VGQ VKV++
Sbjct: 680 DLHAGMILEGVVTNVANFGAFVDVGVHQDGLVHISALSDTFVKDPRDVVRVGQMVKVKVQ 739
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVR--TTRRSTSKPGQ 250
E +A RI LTMR +DD ++ D +AS R RRS ++ Q
Sbjct: 740 EVDAARKRIGLTMRLNDDAPPARRGNDQSASNSGARRDNHRRSDTRSDQ 788
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 15/103 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT +F +G + LEG V N+ GAF+ + ++G + S
Sbjct: 657 KPGRDPRPEFKTAQFKEGVNTINDLHAGMILEGVVTNVANFGAFVDVGVHQDGLVHISAL 716
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDD 336
SD + ++VGQ V V+V + +R ++ LTM+ DD
Sbjct: 717 SDTFVKDPR--DVVRVGQMVKVKVQEVDAARKRIGLTMRLNDD 757
>gi|300864265|ref|ZP_07109145.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
gi|300337730|emb|CBN54291.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
Length = 746
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 65/107 (60%), Gaps = 16/107 (14%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL G G V ++ FGAF+D G DGLVH+S+L+D FV+D IV VGQ VKVR++
Sbjct: 642 DLNVGMELEGIVTNVANFGAFVDIGVHQDGLVHISQLADRFVEDPKLIVKVGQVVKVRVL 701
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQ 250
E N + RISL+M KLQ+Q++ + R++TSKP Q
Sbjct: 702 EVNEKLKRISLSM-------KLQEQQN---------SDRKATSKPQQ 732
Score = 42.4 bits (98), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 15/120 (12%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKG----------QDLEGTVKNLTRSGAFISLPEGE 286
+R + KPG+ RDE K F +G +LEG V N+ GAF+ + +
Sbjct: 610 LRDIIKELEKPGRDPRDEFKYATFKEGIKEISDLNVGMELEGIVTNVANFGAFVDIGVHQ 669
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISR--GQVTLTMKKEDDVGSNLQLT 344
+G + S+ +D + ++VGQ V VRVL ++ +++L+MK ++ S+ + T
Sbjct: 670 DGLVHISQLADRFVED--PKLIVKVGQVVKVRVLEVNEKLKRISLSMKLQEQQNSDRKAT 727
>gi|56479339|ref|YP_160928.1| hypothetical protein ebA6834 [Aromatoleum aromaticum EbN1]
gi|56315382|emb|CAI10027.1| conserved hypothetical protein, putative s1 rna binding domain
protein [Aromatoleum aromaticum EbN1]
Length = 782
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 53/79 (67%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S L+D FVKD S+V GQ VKV++
Sbjct: 645 KDLAPGMMLEGTVTNVTNFGAFVDVGVHQDGLVHISALADRFVKDPHSVVKAGQVVKVKV 704
Query: 203 IEANAETGRISLTMRESDD 221
+E + RI+LTMR SD+
Sbjct: 705 LEVDLARKRIALTMRMSDE 723
Score = 43.9 bits (102), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 15/103 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E +T F +G + LEGTV N+T GAF+ + ++G + S
Sbjct: 623 KPGRDPRPEFRTATFREGVETLKDLAPGMMLEGTVTNVTNFGAFVDVGVHQDGLVHISAL 682
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDD 336
+D + S ++ GQ V V+VL + +R ++ LTM+ D+
Sbjct: 683 ADRFVKDPH--SVVKAGQVVKVKVLEVDLARKRIALTMRMSDE 723
>gi|422323215|ref|ZP_16404255.1| tex protein [Achromobacter xylosoxidans C54]
gi|317401789|gb|EFV82404.1| tex protein [Achromobacter xylosoxidans C54]
Length = 791
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 58/94 (61%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L++ FVKD +V VGQ V V+++
Sbjct: 666 DLYPGMVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVSVKVL 725
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDK 237
E + R++LTMR +D + ++ DA GD+
Sbjct: 726 EVDVARKRVALTMRLNDTAAPARRGADAPKGGDR 759
Score = 42.7 bits (99), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 15/111 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT +F +G + LEG V N+ GAF+ + +
Sbjct: 634 VRDIFAELEKPGRDPRPEFKTAQFKEGVETLNDLYPGMVLEGVVTNVANFGAFVDIGVHQ 693
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKED 335
+G + S ++ + ++VGQ VSV+VL ++R +V LTM+ D
Sbjct: 694 DGLVHISALAEKFVKDPR--DVVRVGQTVSVKVLEVDVARKRVALTMRLND 742
>gi|452124247|ref|ZP_21936831.1| transcription accessory protein [Bordetella holmesii F627]
gi|452127644|ref|ZP_21940224.1| transcription accessory protein [Bordetella holmesii H558]
gi|451923477|gb|EMD73618.1| transcription accessory protein [Bordetella holmesii F627]
gi|451926513|gb|EMD76646.1| transcription accessory protein [Bordetella holmesii H558]
Length = 795
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 65/108 (60%), Gaps = 8/108 (7%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG T G V ++ FGAF+D G DGLVH+S L++ FVKD +V VGQ V V+++
Sbjct: 666 DLHPGMTLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVTVKVL 725
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQK 251
E + R++LTMR +D + + A A RT R+ T+ PGQ+
Sbjct: 726 EVDVPRKRVALTMRLNDP----AEPRRAAAP----RTDRQPTANPGQR 765
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 15/111 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT +F +G + LEG V N+ GAF+ + +
Sbjct: 634 VRDIFSELEKPGRDPRPEFKTAQFKEGVETLNDLHPGMTLEGVVTNVANFGAFVDIGVHQ 693
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKKED 335
+G + S ++ + ++VGQ V+V+VL + R +V LTM+ D
Sbjct: 694 DGLVHISALAEKFVKDPR--DVVRVGQTVTVKVLEVDVPRKRVALTMRLND 742
>gi|365920035|ref|ZP_09444389.1| Tex-like protein [Cardiobacterium valvarum F0432]
gi|364578546|gb|EHM55746.1| Tex-like protein [Cardiobacterium valvarum F0432]
Length = 749
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 65/117 (55%), Gaps = 11/117 (9%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL G G V ++ FGAF+D G DGLVH+S L++ +V D IV G VKV+++
Sbjct: 635 DLSSGMILEGVVSNVANFGAFVDIGVHQDGLVHISALANRYVADPREIVKAGDVVKVKVL 694
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKF 260
E +AE RI+LTMR D DA ASG K R R +P QK+++M T
Sbjct: 695 EVDAERKRIALTMRLDD---------DAIASGKKDRP--RGDKRPPQKQEKMTNTAM 740
>gi|428202355|ref|YP_007080944.1| transcriptional accessory protein [Pleurocapsa sp. PCC 7327]
gi|427979787|gb|AFY77387.1| transcriptional accessory protein [Pleurocapsa sp. PCC 7327]
Length = 722
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 51/75 (68%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S+L+D FVKD IV VGQ VKVR++
Sbjct: 644 DLKPGMELEGIVTNVANFGAFVDIGVHQDGLVHISQLADRFVKDPKEIVQVGQVVKVRVL 703
Query: 204 EANAETGRISLTMRE 218
E N RISL+M++
Sbjct: 704 EVNESLKRISLSMKQ 718
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 15/100 (15%)
Query: 247 KPGQK-RDEMKTTKF---VK-------GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E K F +K G +LEG V N+ GAF+ + ++G + S+
Sbjct: 621 KPGRDPRSEFKYATFKEGIKEIGDLKPGMELEGIVTNVANFGAFVDIGVHQDGLVHISQL 680
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKK 333
+D + +QVGQ V VRVL + S +++L+MK+
Sbjct: 681 ADRFVKD--PKEIVQVGQVVKVRVLEVNESLKRISLSMKQ 718
>gi|253577005|ref|ZP_04854328.1| RNA binding S1 domain-containing protein [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251843615|gb|EES71640.1| RNA binding S1 domain-containing protein [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 743
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 57/91 (62%), Gaps = 7/91 (7%)
Query: 134 KSEMPP-------VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVK 186
+ E+PP +K EDL+PG G VR++ FGAF+D G DGLVH+S+LS+ +VK
Sbjct: 646 REELPPPIFRTDVLKIEDLVPGMELQGTVRNVIDFGAFVDIGIKNDGLVHISQLSNGYVK 705
Query: 187 DVGSIVSVGQEVKVRLIEANAETGRISLTMR 217
+VSVG V V ++ + + GR+ LTMR
Sbjct: 706 HPMDVVSVGDNVTVWVLNVDVKKGRVGLTMR 736
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R P + D +K V G +L+GTV+N+ GAF+ + +G + S+ S+
Sbjct: 643 RDPREELPPPIFRTDVLKIEDLVPGMELQGTVRNVIDFGAFVDIGIKNDGLVHISQLSNG 702
Query: 299 GFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMK 332
+ M + VG V+V VL + +G+V LTM+
Sbjct: 703 YVKHPM--DVVSVGDNVTVWVLNVDVKKGRVGLTMR 736
>gi|118443081|ref|YP_878976.1| S1 RNA-binding domain-containing protein [Clostridium novyi NT]
gi|118133537|gb|ABK60581.1| S1 RNA binding domain protein [Clostridium novyi NT]
Length = 718
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 53/74 (71%)
Query: 145 LIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIE 204
L PG TG VR++ FGAF+D G DGLVH+S+LSD FVK+ IV VG V+VR++E
Sbjct: 645 LKPGMMLTGTVRNVADFGAFVDIGVHQDGLVHISQLSDKFVKNPLDIVKVGDIVEVRVLE 704
Query: 205 ANAETGRISLTMRE 218
+ + GRISL+M++
Sbjct: 705 VDEKRGRISLSMKK 718
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP K+ + + G L GTV+N+ GAF+ + ++G + S+ SD
Sbjct: 624 RDPREELPKPIFKKGIVDINQLKPGMMLTGTVRNVADFGAFVDIGVHQDGLVHISQLSDK 683
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKK 333
N + ++VG V VRVL + RG+++L+MKK
Sbjct: 684 FVKNPL--DIVKVGDIVEVRVLEVDEKRGRISLSMKK 718
>gi|366163165|ref|ZP_09462920.1| RNA binding S1 [Acetivibrio cellulolyticus CD2]
Length = 718
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 51/76 (67%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG TG VR++ FGAF+D G DGLVH+S L D +VK +V+VG VKVR+
Sbjct: 641 EDLRPGMVLTGTVRNVADFGAFVDIGVHQDGLVHISELCDRYVKSPMEVVAVGDIVKVRI 700
Query: 203 IEANAETGRISLTMRE 218
++ + RISL+M+E
Sbjct: 701 LDVEVQRKRISLSMKE 716
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP D + G L GTV+N+ GAF+ + ++G + SE D
Sbjct: 622 RDPRDELPKPVLLTDVLDIEDLRPGMVLTGTVRNVADFGAFVDIGVHQDGLVHISELCDR 681
Query: 299 GFANMMGGSSLQVGQEVSVRVL--RISRGQVTLTMK 332
+ M + VG V VR+L + R +++L+MK
Sbjct: 682 YVKSPM--EVVAVGDIVKVRILDVEVQRKRISLSMK 715
>gi|452819699|gb|EME26753.1| 30S ribosomal protein S1 [Galdieria sulphuraria]
Length = 275
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 115/234 (49%), Gaps = 50/234 (21%)
Query: 103 IPSDVETSESSSIKSEASPTLAESRRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFG 162
+ SD + S S E SP L+ S DL+ G T+TG V+++ +G
Sbjct: 73 LRSDAAVNASVSYGEEGSPQLSVS-----------------DLVIGETYTGIVKNVTNYG 115
Query: 163 AFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDI 222
AF+D GA GL+H+S++S+ FV +VS+G +V VR+ + + E + SLTM
Sbjct: 116 AFVDIGANKLGLLHISQMSNRFVNHPNEVVSIGSQVTVRVYKIDVEKDQFSLTM------ 169
Query: 223 SKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTT--KFVKGQDLEGTVKNLTRSGAFI 280
K Q+ + RR +P + +++ + + + +G V N+T GAF+
Sbjct: 170 -KTQEPR------------RRRNDEPENVVEALRSFAEQVDRHEFRKGRVVNVTDFGAFV 216
Query: 281 SLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMK 332
+ ++G + ++ +DD L+V E+ VRV +I SR +TL+MK
Sbjct: 217 DIDGPKDGLVFRADMTDD----------LEVDDEIQVRVKKIDLSRKFITLSMK 260
>gi|328957351|ref|YP_004374737.1| 30S ribosomal protein S1 [Carnobacterium sp. 17-4]
gi|328673675|gb|AEB29721.1| 30S ribosomal protein S1 [Carnobacterium sp. 17-4]
Length = 406
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 104/218 (47%), Gaps = 40/218 (18%)
Query: 106 DVETSESSSIKSEASPTLAESRRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFI 165
++E SE+ I S + AE+ + + L+ G GK+ + FGAFI
Sbjct: 172 EIEPSENRLILSHKAVVEAENEEKKKDLLNH--------LVEGDIVKGKIARLTNFGAFI 223
Query: 166 DFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKL 225
D G DGLVH+S+++ VKD +++VG+EV V+++ N E GRISL+++E
Sbjct: 224 DLGG-VDGLVHISQIAYEHVKDPADVLTVGEEVNVKILSVNEEEGRISLSIKE------- 275
Query: 226 QQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEG 285
+ PG D+++ V G L+G VK LT GAF+ + G
Sbjct: 276 --------------------TLPG-PWDDIEERAAV-GSVLDGLVKRLTSFGAFVEVFPG 313
Query: 286 EEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRIS 323
EG + S+ S + A L G E+ V+VL ++
Sbjct: 314 VEGLVHISQISHNHIAT--PHEVLNEGDEIKVKVLEVN 349
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 44/70 (62%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G+ G V+ + FGAF++ +GLVH+S++S N + +++ G E+KV+++E N
Sbjct: 291 GSVLDGLVKRLTSFGAFVEVFPGVEGLVHISQISHNHIATPHEVLNEGDEIKVKVLEVNP 350
Query: 208 ETGRISLTMR 217
R+SL+++
Sbjct: 351 TDQRLSLSIK 360
>gi|186476164|ref|YP_001857634.1| RNA-binding S1 domain-containing protein [Burkholderia phymatum
STM815]
gi|184192623|gb|ACC70588.1| RNA binding S1 domain protein [Burkholderia phymatum STM815]
Length = 780
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 52/82 (63%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAFID G DGLVHVS +S F+KD +V GQ VKV
Sbjct: 649 KISDLSPGMVLEGVVTNVAAFGAFIDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQIVKV 708
Query: 201 RLIEANAETGRISLTMRESDDI 222
+++E + + RISLTMR DD+
Sbjct: 709 KVLEVDVKRQRISLTMRMDDDV 730
Score = 43.5 bits (101), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 15/113 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT F +G + LEG V N+ GAFI + +
Sbjct: 620 VRDILAELEKPGRDPRPEFKTATFREGVEKISDLSPGMVLEGVVTNVAAFGAFIDIGVHQ 679
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKEDDV 337
+G + S S + ++ GQ V V+VL + R +++LTM+ +DDV
Sbjct: 680 DGLVHVSAMSTKFIKD--PHEVVKAGQIVKVKVLEVDVKRQRISLTMRMDDDV 730
>gi|291614014|ref|YP_003524171.1| hypothetical protein Slit_1548 [Sideroxydans lithotrophicus ES-1]
gi|291584126|gb|ADE11784.1| Tex-like protein protein-like protein [Sideroxydans lithotrophicus
ES-1]
Length = 786
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 53/78 (67%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S L+D FVKD S+V GQ VKV++
Sbjct: 659 KDLEPGMILEGVVTNVAAFGAFVDIGVHQDGLVHISALADKFVKDPHSVVKAGQIVKVKV 718
Query: 203 IEANAETGRISLTMRESD 220
+E + + R+SLTMR +D
Sbjct: 719 LEVDVKRKRVSLTMRLTD 736
Score = 39.3 bits (90), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 15/105 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E T F +G + LEG V N+ GAF+ + ++G + S
Sbjct: 637 KPGRDPRPEFTTASFREGVEELKDLEPGMILEGVVTNVAAFGAFVDIGVHQDGLVHISAL 696
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKEDDVG 338
+D + S ++ GQ V V+VL + R +V+LTM+ D G
Sbjct: 697 ADKFVKDPH--SVVKAGQIVKVKVLEVDVKRKRVSLTMRLTDAAG 739
>gi|443315381|ref|ZP_21044875.1| transcriptional accessory protein [Leptolyngbya sp. PCC 6406]
gi|442785020|gb|ELR94866.1| transcriptional accessory protein [Leptolyngbya sp. PCC 6406]
Length = 767
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 63/107 (58%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG T G V ++ FGAF+D G DGLVH+S+L+D FVKD IV VGQ V VR++
Sbjct: 638 DLKPGLTLEGVVTNVANFGAFVDIGVHQDGLVHISQLADRFVKDPKDIVKVGQVVTVRVL 697
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQ 250
E + + RI L+MR ++ + ++ GD + R + +P Q
Sbjct: 698 EVDEKLKRIGLSMRSGEESAPPRRDDQKPVRGDHRPSERSADPRPRQ 744
>gi|71908357|ref|YP_285944.1| RNA binding S1 [Dechloromonas aromatica RCB]
gi|71847978|gb|AAZ47474.1| RNA binding S1 [Dechloromonas aromatica RCB]
Length = 772
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 67/107 (62%), Gaps = 2/107 (1%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAF+D G DGLVHVS LS+ FVKD +V GQ VKV
Sbjct: 648 KVSDLRPGMILEGVVTNVAAFGAFVDIGVHQDGLVHVSALSNTFVKDPHDVVKAGQVVKV 707
Query: 201 RLIEANAETGRISLTMRESDDISKLQQQKDATAS--GDKVRTTRRST 245
+++E + + RI+LTMR D+ ++ ++ +A A+ ++ R +RS+
Sbjct: 708 KVLEVDLQRQRIALTMRMGDEPTQGKRHDNAPANRGNNQSRPAQRSS 754
>gi|435852917|ref|YP_007314236.1| transcriptional accessory protein [Halobacteroides halobius DSM
5150]
gi|433669328|gb|AGB40143.1| transcriptional accessory protein [Halobacteroides halobius DSM
5150]
Length = 717
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 54/77 (70%)
Query: 140 VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
+K EDL G TGKV ++ FGAF+D G DGLVH+S LS +FVKD +V+VGQ VK
Sbjct: 639 LKLEDLEIGMILTGKVSNVVDFGAFVDIGVKEDGLVHISELSSDFVKDPLEVVAVGQTVK 698
Query: 200 VRLIEANAETGRISLTM 216
V+++E N G+ISLTM
Sbjct: 699 VKVLEINQVKGQISLTM 715
Score = 46.2 bits (108), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R S+ KR +K G L G V N+ GAF+ + E+G + SE S D
Sbjct: 623 RDPREEVSQSIFKRSILKLEDLEIGMILTGKVSNVVDFGAFVDIGVKEDGLVHISELSSD 682
Query: 299 GFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTM 331
+ + + VGQ V V+VL I+ +GQ++LTM
Sbjct: 683 FVKDPL--EVVAVGQTVKVKVLEINQVKGQISLTM 715
>gi|407804224|ref|ZP_11151051.1| S1 RNA-binding domain-containing protein [Alcanivorax sp. W11-5]
gi|407021876|gb|EKE33636.1| S1 RNA-binding domain-containing protein [Alcanivorax sp. W11-5]
Length = 797
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVHVS LS+ FVKD +VS G VKV++
Sbjct: 653 KDLKPGMILEGAVTNVTNFGAFVDIGVHQDGLVHVSALSEKFVKDAHEVVSPGDIVKVKV 712
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATA-SGDKVRTTRRS 244
+E + RISLTMR D + QQ++ A +GD R R+
Sbjct: 713 LEVDLNRRRISLTMRLDDRHEEGQQRQAGNAPAGDTRRQHPRA 755
>gi|110632678|ref|YP_672886.1| RNA binding S1 [Chelativorans sp. BNC1]
gi|110283662|gb|ABG61721.1| RNA binding S1 [Chelativorans sp. BNC1]
Length = 772
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 66/111 (59%), Gaps = 9/111 (8%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVHVS+L++ FVKD +V G VKVR+
Sbjct: 645 KDLKPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLANRFVKDAHEVVKAGDVVKVRV 704
Query: 203 IEANAETGRISLTMRESDDI-SKLQQQKDATASGDKVRTTRRSTSKPGQKR 252
+E + + RISL+MR D S+ QQ ++ SG +R S+PG R
Sbjct: 705 LEVDIKRNRISLSMRSDGDAGSRPQQPRE---SGKPLR-----NSQPGNDR 747
Score = 43.5 bits (101), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 21/112 (18%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R +T F G D LEGTV N+ GAF+ + ++G + S+
Sbjct: 623 KPGRDPRPAFRTATFADGIDDIKDLKPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQ- 681
Query: 296 SDDGFANMMGGSSLQV---GQEVSVRVLR--ISRGQVTLTMKKEDDVGSNLQ 342
AN + +V G V VRVL I R +++L+M+ + D GS Q
Sbjct: 682 ----LANRFVKDAHEVVKAGDVVKVRVLEVDIKRNRISLSMRSDGDAGSRPQ 729
>gi|251798940|ref|YP_003013671.1| RNA binding S1 domain-containing protein [Paenibacillus sp. JDR-2]
gi|247546566|gb|ACT03585.1| RNA binding S1 domain protein [Paenibacillus sp. JDR-2]
Length = 747
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 57/92 (61%), Gaps = 7/92 (7%)
Query: 134 KSEMPP-------VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVK 186
+ E+PP + EDL PG G VR++ FGAFID G DGLVH+S++SD FVK
Sbjct: 654 REELPPPIFHTDVLNIEDLTPGMELQGTVRNVIDFGAFIDIGIKNDGLVHISQMSDKFVK 713
Query: 187 DVGSIVSVGQEVKVRLIEANAETGRISLTMRE 218
+VSVG V V ++ + + GR+SLTMR+
Sbjct: 714 HPMDVVSVGDNVTVWVLGVDLKKGRVSLTMRK 745
Score = 45.4 bits (106), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R P D + G +L+GTV+N+ GAFI + +G + S+ SD
Sbjct: 651 RDPREELPPPIFHTDVLNIEDLTPGMELQGTVRNVIDFGAFIDIGIKNDGLVHISQMSDK 710
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKE 334
+ M + VG V+V VL + +G+V+LTM+K+
Sbjct: 711 FVKHPM--DVVSVGDNVTVWVLGVDLKKGRVSLTMRKQ 746
>gi|373493964|ref|ZP_09584570.1| hypothetical protein HMPREF0380_00208 [Eubacterium infirmum F0142]
gi|371969098|gb|EHO86549.1| hypothetical protein HMPREF0380_00208 [Eubacterium infirmum F0142]
Length = 722
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 64/102 (62%), Gaps = 7/102 (6%)
Query: 123 LAESRRSRTARKSEMPPV--KN-----EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLV 175
+AE R+ + + PPV +N EDL G +G VR++ FGAF+D G DGLV
Sbjct: 620 IAELRKPGRDPREDAPPVVFRNDVRSFEDLKEGMEMSGTVRNVVDFGAFVDIGVKNDGLV 679
Query: 176 HVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMR 217
HVS+LS+ FVK +VSVG VKVR+I + E G++SLTM+
Sbjct: 680 HVSQLSNKFVKHPMDVVSVGDTVKVRIIGIDKERGKVSLTMK 721
Score = 42.7 bits (99), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 5/93 (5%)
Query: 243 RSTSKPGQKRDEMKTTKFVK-GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFA 301
R + P R+++++ + +K G ++ GTV+N+ GAF+ + +G + S+ S+
Sbjct: 631 REDAPPVVFRNDVRSFEDLKEGMEMSGTVRNVVDFGAFVDIGVKNDGLVHVSQLSNKFVK 690
Query: 302 NMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMK 332
+ M + VG V VR++ I RG+V+LTMK
Sbjct: 691 HPM--DVVSVGDTVKVRIIGIDKERGKVSLTMK 721
>gi|332710577|ref|ZP_08430522.1| transcriptional accessory protein [Moorea producens 3L]
gi|332350632|gb|EGJ30227.1| transcriptional accessory protein [Moorea producens 3L]
Length = 720
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 52/75 (69%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S+L+D FV+D IV VGQ VKVR+
Sbjct: 641 KDLSPGMELEGIVTNVVNFGAFVDIGVHQDGLVHISQLADRFVEDPKQIVKVGQVVKVRV 700
Query: 203 IEANAETGRISLTMR 217
+E N + R+SL+MR
Sbjct: 701 MEVNEKLKRVSLSMR 715
>gi|374604485|ref|ZP_09677445.1| RNA binding S1 domain-containing protein [Paenibacillus
dendritiformis C454]
gi|374389923|gb|EHQ61285.1| RNA binding S1 domain-containing protein [Paenibacillus
dendritiformis C454]
Length = 744
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 57/93 (61%), Gaps = 7/93 (7%)
Query: 134 KSEMPPV-------KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVK 186
+ E+PPV + EDL PG G VR++ FGAFID G DGLVH+S+LSD +VK
Sbjct: 646 REELPPVVFRTDVLQIEDLKPGMELKGTVRNVIDFGAFIDIGIKNDGLVHISQLSDRYVK 705
Query: 187 DVGSIVSVGQEVKVRLIEANAETGRISLTMRES 219
+VSVG V V ++ + + GR+ LTM+ S
Sbjct: 706 HPLDVVSVGDNVTVWVLSVDVKKGRVGLTMKRS 738
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 253 DEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVG 312
D ++ G +L+GTV+N+ GAFI + +G + S+ SD + + S VG
Sbjct: 657 DVLQIEDLKPGMELKGTVRNVIDFGAFIDIGIKNDGLVHISQLSDRYVKHPLDVVS--VG 714
Query: 313 QEVSVRVLR--ISRGQVTLTMKK 333
V+V VL + +G+V LTMK+
Sbjct: 715 DNVTVWVLSVDVKKGRVGLTMKR 737
>gi|393759266|ref|ZP_10348082.1| transcription accessory protein [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
gi|393162494|gb|EJC62552.1| transcription accessory protein [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
Length = 782
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 50/78 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LSD FVKD +V VGQ VKV++
Sbjct: 661 DLTPGLILEGVVTNVANFGAFVDVGVHQDGLVHISALSDTFVKDPRDVVRVGQTVKVKVQ 720
Query: 204 EANAETGRISLTMRESDD 221
E + RI LTMR +DD
Sbjct: 721 EVDVARKRIGLTMRLNDD 738
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 15/112 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E T KF +G + LEG V N+ GAF+ + +
Sbjct: 629 VRDIFNEIEKPGRDPRPEFTTAKFQEGINSLNDLTPGLILEGVVTNVANFGAFVDVGVHQ 688
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRV--LRISRGQVTLTMKKEDD 336
+G + S SD + ++VGQ V V+V + ++R ++ LTM+ DD
Sbjct: 689 DGLVHISALSDTFVKDPR--DVVRVGQTVKVKVQEVDVARKRIGLTMRLNDD 738
>gi|301299466|ref|ZP_07205741.1| 30S ribosomal protein S1 [Lactobacillus salivarius ACS-116-V-Col5a]
gi|300852929|gb|EFK80538.1| 30S ribosomal protein S1 [Lactobacillus salivarius ACS-116-V-Col5a]
Length = 397
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 101/217 (46%), Gaps = 40/217 (18%)
Query: 106 DVETSESSSIKSEASPTLAESRRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFI 165
++E S++ I S AE R A E L+ G GKV + FGAFI
Sbjct: 165 EIEPSDNRLILSRKELVQAEREAKRQAVM--------EKLVAGDVVEGKVARLTNFGAFI 216
Query: 166 DFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKL 225
+ G F DGLVHVS +S V + VGQEVKV+++ +AE GRISL++++
Sbjct: 217 NLGGF-DGLVHVSEISYERVNKPADALKVGQEVKVKVLSVDAEKGRISLSIKQ------- 268
Query: 226 QQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEG 285
+ +P ++ E + +G LEGTVK LT GAF+ + G
Sbjct: 269 ------------------TLPEPWEQVPE----QVAEGDVLEGTVKRLTSFGAFVEVLPG 306
Query: 286 EEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
EG + S+ S A L G++V V+VL +
Sbjct: 307 VEGLVHISQISHKHIAT--PNEVLTSGEKVQVKVLSV 341
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 111/243 (45%), Gaps = 44/243 (18%)
Query: 96 DSAGASDIPSDVETSESSSIKSEASPTLAESRRSRTARKSEMPPVKNE---DLIPGATFT 152
D+ A D+ V + S K S L S+R AR+ V NE G T
Sbjct: 65 DTYKAGDMLDLVVIARIGSDKEGGSYLL--SQRRLEARR-----VWNEIEDKFKAGETIK 117
Query: 153 GKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRI 212
V + G +D G G V S +SD+FV+D+ GQE++++++E R+
Sbjct: 118 APVTQVVKGGLVVDAG--VRGFVPASMVSDHFVEDLNQFK--GQELELKIVEIEPSDNRL 173
Query: 213 SLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKN 272
L+ +E +Q +++A KR + K V G +EG V
Sbjct: 174 ILSRKEL-----VQAEREA-------------------KRQAV-MEKLVAGDVVEGKVAR 208
Query: 273 LTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLT 330
LT GAFI+L G +G + SE S + +L+VGQEV V+VL + +G+++L+
Sbjct: 209 LTNFGAFINLG-GFDGLVHVSEISYERVNK--PADALKVGQEVKVKVLSVDAEKGRISLS 265
Query: 331 MKK 333
+K+
Sbjct: 266 IKQ 268
Score = 46.6 bits (109), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 45/75 (60%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E + G G V+ + FGAF++ +GLVH+S++S + +++ G++V+V++
Sbjct: 279 EQVAEGDVLEGTVKRLTSFGAFVEVLPGVEGLVHISQISHKHIATPNEVLTSGEKVQVKV 338
Query: 203 IEANAETGRISLTMR 217
+ +A R++L+++
Sbjct: 339 LSVDAADHRLALSIK 353
>gi|295676889|ref|YP_003605413.1| Tex-like protein [Burkholderia sp. CCGE1002]
gi|295436732|gb|ADG15902.1| Tex-like protein protein-like protein [Burkholderia sp. CCGE1002]
Length = 783
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 52/81 (64%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DLIPG G V ++ FGAFID G DGLVHVS +S FVKD +V GQ VKV
Sbjct: 649 KVSDLIPGMVLEGVVTNVAAFGAFIDVGVHQDGLVHVSAMSTKFVKDPHEVVKAGQIVKV 708
Query: 201 RLIEANAETGRISLTMRESDD 221
+++E + + RI+LTMR D+
Sbjct: 709 KVLEVDVKRQRIALTMRLDDE 729
Score = 38.9 bits (89), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 15/112 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKF----------VKGQDLEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT F + G LEG V N+ GAFI + +
Sbjct: 620 VRDILVELEKPGRDPRPEFKTATFREGVEKVSDLIPGMVLEGVVTNVAAFGAFIDVGVHQ 679
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKEDD 336
+G + S S + ++ GQ V V+VL + R ++ LTM+ +D+
Sbjct: 680 DGLVHVSAMSTKFVKDPH--EVVKAGQIVKVKVLEVDVKRQRIALTMRLDDE 729
>gi|218885973|ref|YP_002435294.1| RNA binding S1 domain-containing protein [Desulfovibrio vulgaris
str. 'Miyazaki F']
gi|218756927|gb|ACL07826.1| RNA binding S1 domain protein [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 756
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 53/78 (67%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVHVS+LSD FV+D +V+ G+ V+VR+
Sbjct: 677 DDLEPGMVLPGIVTNVTAFGAFVDIGVHRDGLVHVSQLSDRFVRDPAEVVAPGRTVRVRV 736
Query: 203 IEANAETGRISLTMRESD 220
+E + GR+SLTM+ D
Sbjct: 737 LEVDRARGRVSLTMKGVD 754
>gi|81428628|ref|YP_395628.1| 30S ribosomal protein S1 [Lactobacillus sakei subsp. sakei 23K]
gi|78610270|emb|CAI55319.1| 30S Ribosomal protein S1 [Lactobacillus sakei subsp. sakei 23K]
Length = 403
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 97/206 (47%), Gaps = 33/206 (16%)
Query: 117 SEASPTLAESRRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVH 176
SE L+ R++++ V E L+PG G+V + FGAF+D G DGLVH
Sbjct: 175 SENRLILSRKALVEQERQAQLKAV-FEKLLPGDIVEGEVARLTNFGAFVDLGG-VDGLVH 232
Query: 177 VSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGD 236
VS +S + + ++ VGQ VKV+++ + E GRISL+++++
Sbjct: 233 VSEISYDHINQPSDVLEVGQNVKVKILSLDQEKGRISLSIKDT----------------- 275
Query: 237 KVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEES 296
+PG D + G LEGTVK LT GAF+ + G EG + S+ S
Sbjct: 276 ----------QPGPWDDIAEKAPV--GSTLEGTVKRLTTFGAFVEVFPGVEGLVHISQIS 323
Query: 297 DDGFANMMGGSSLQVGQEVSVRVLRI 322
A L+ GQ V V+VL +
Sbjct: 324 HQHIAT--PNDVLEEGQTVQVKVLSV 347
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 87/187 (46%), Gaps = 38/187 (20%)
Query: 150 TFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAET 209
T V ++ G +D G G + S LSD FV+D+ S GQE+++++IE
Sbjct: 121 TIKATVLNVVKGGLVVDAG--VRGFLPASMLSDRFVRDLNSF--KGQELELQIIEIEPSE 176
Query: 210 GRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTT--KFVKGQDLE 267
R+ L+ + + ++Q++ A ++K K + G +E
Sbjct: 177 NRLILSRK-----ALVEQERQA----------------------QLKAVFEKLLPGDIVE 209
Query: 268 GTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI--SRG 325
G V LT GAF+ L G +G + SE S D L+VGQ V V++L + +G
Sbjct: 210 GEVARLTNFGAFVDLG-GVDGLVHVSEISYDHINQ--PSDVLEVGQNVKVKILSLDQEKG 266
Query: 326 QVTLTMK 332
+++L++K
Sbjct: 267 RISLSIK 273
Score = 48.5 bits (114), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 42/70 (60%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G+T G V+ + FGAF++ +GLVH+S++S + ++ GQ V+V+++ +
Sbjct: 290 GSTLEGTVKRLTTFGAFVEVFPGVEGLVHISQISHQHIATPNDVLEEGQTVQVKVLSVDP 349
Query: 208 ETGRISLTMR 217
E R+ L+++
Sbjct: 350 EQQRLGLSIK 359
>gi|209521839|ref|ZP_03270516.1| RNA binding S1 domain protein [Burkholderia sp. H160]
gi|209497722|gb|EDZ97900.1| RNA binding S1 domain protein [Burkholderia sp. H160]
Length = 784
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 52/81 (64%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DLIPG G V ++ FGAFID G DGLVHVS +S FVKD +V GQ VKV
Sbjct: 649 KVSDLIPGMVLEGVVTNVAAFGAFIDVGVHQDGLVHVSAMSTKFVKDPHEVVKAGQIVKV 708
Query: 201 RLIEANAETGRISLTMRESDD 221
+++E + + RI+LTMR D+
Sbjct: 709 KVLEVDVKRQRIALTMRLDDE 729
>gi|37523713|ref|NP_927090.1| hypothetical protein glr4144 [Gloeobacter violaceus PCC 7421]
gi|35214718|dbj|BAC92085.1| glr4144 [Gloeobacter violaceus PCC 7421]
Length = 722
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 53/77 (68%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL+ G G V ++ FGAF+D G DGLVHVS+L+D FV D ++V VGQ V+VR+
Sbjct: 640 KDLVVGMELEGVVTNVTNFGAFVDIGVHQDGLVHVSQLADRFVADPKAVVKVGQIVRVRV 699
Query: 203 IEANAETGRISLTMRES 219
+E N GRI L+MR++
Sbjct: 700 LEVNTALGRIGLSMRQA 716
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Query: 260 FVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRV 319
V G +LEG V N+T GAF+ + ++G + S+ +D A+ + ++VGQ V VRV
Sbjct: 642 LVVGMELEGVVTNVTNFGAFVDIGVHQDGLVHVSQLADRFVAD--PKAVVKVGQIVRVRV 699
Query: 320 LRI--SRGQVTLTMKK 333
L + + G++ L+M++
Sbjct: 700 LEVNTALGRIGLSMRQ 715
>gi|339325591|ref|YP_004685284.1| transcriptional accessory protein Tex [Cupriavidus necator N-1]
gi|338165748|gb|AEI76803.1| transcriptional accessory protein Tex [Cupriavidus necator N-1]
Length = 783
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 57/95 (60%), Gaps = 4/95 (4%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S LS+ FVKD +V GQ VKV++
Sbjct: 658 KDLQPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHISALSNKFVKDAHEVVKAGQVVKVKV 717
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDK 237
+E + + RI L+MR D+ Q A A GD+
Sbjct: 718 MEVDVKRNRIGLSMRLDDEPG----QAAARAGGDR 748
>gi|116626034|ref|YP_828190.1| RNA-binding S1 domain-containing protein [Candidatus Solibacter
usitatus Ellin6076]
gi|116229196|gb|ABJ87905.1| RNA binding S1 domain protein [Candidatus Solibacter usitatus
Ellin6076]
Length = 749
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 53/77 (68%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG T G V ++ FGAFID G DGLVHVS+L++ FVKD +V GQ VKV++I
Sbjct: 639 DLQPGMTLEGVVTNVTRFGAFIDVGVHNDGLVHVSQLANRFVKDASEVVKAGQIVKVQVI 698
Query: 204 EANAETGRISLTMRESD 220
A+ +T RI+L+M+ D
Sbjct: 699 SADPKTKRIALSMKALD 715
>gi|390449343|ref|ZP_10234952.1| RNA binding S1 [Nitratireductor aquibiodomus RA22]
gi|389664448|gb|EIM75943.1| RNA binding S1 [Nitratireductor aquibiodomus RA22]
Length = 780
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 52/76 (68%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG + G V ++ FGAF+D G DGLVHVS+L+D FVKD +V G VKVR+
Sbjct: 645 KDLKPGMSLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDAHEVVKAGDVVKVRV 704
Query: 203 IEANAETGRISLTMRE 218
+E + + RISL+MR+
Sbjct: 705 LEVDIKRKRISLSMRK 720
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 15/110 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R +T F +G D LEGTV N+ GAF+ + +
Sbjct: 614 VRDIISELEKPGRDPRPAFRTATFAEGIDDIKDLKPGMSLEGTVTNVAAFGAFVDIGVHQ 673
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKE 334
+G + S+ +D + ++ G V VRVL I R +++L+M+K+
Sbjct: 674 DGLVHVSQLADRFVKD--AHEVVKAGDVVKVRVLEVDIKRKRISLSMRKD 721
>gi|444920084|ref|ZP_21239928.1| Hypothetical protein F387_01011 [Wohlfahrtiimonas chitiniclastica
SH04]
gi|444508951|gb|ELV09119.1| Hypothetical protein F387_01011 [Wohlfahrtiimonas chitiniclastica
SH04]
Length = 753
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 55/84 (65%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL G G + ++ FGAF+D G DGLVH+S L+D FVKD +V VG VKV++
Sbjct: 634 KDLKEGMLLEGVITNVANFGAFVDIGVHQDGLVHISALADRFVKDPHEVVKVGDIVKVKV 693
Query: 203 IEANAETGRISLTMRESDDISKLQ 226
IE + RI LTMR +DD+++++
Sbjct: 694 IEVDVPRNRIQLTMRLTDDVNQMK 717
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 15/108 (13%)
Query: 243 RSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLP 291
+ KPG+ R E KT F +G + LEG + N+ GAF+ + ++G +
Sbjct: 608 KELEKPGRDPRPEFKTATFKEGIETLKDLKEGMLLEGVITNVANFGAFVDIGVHQDGLVH 667
Query: 292 TSEESDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKKEDDV 337
S +D + ++VG V V+V+ + R ++ LTM+ DDV
Sbjct: 668 ISALADRFVKD--PHEVVKVGDIVKVKVIEVDVPRNRIQLTMRLTDDV 713
>gi|227890890|ref|ZP_04008695.1| 30S ribosomal protein S1 [Lactobacillus salivarius ATCC 11741]
gi|385840473|ref|YP_005863797.1| 30S ribosomal protein S1P [Lactobacillus salivarius CECT 5713]
gi|417788386|ref|ZP_12436069.1| SSU ribosomal protein S1p [Lactobacillus salivarius NIAS840]
gi|417810232|ref|ZP_12456911.1| 30S ribosomal protein S1 [Lactobacillus salivarius GJ-24]
gi|418961421|ref|ZP_13513307.1| 30S ribosomal protein S1 [Lactobacillus salivarius SMXD51]
gi|227867299|gb|EEJ74720.1| 30S ribosomal protein S1 [Lactobacillus salivarius ATCC 11741]
gi|300214594|gb|ADJ79010.1| SSU ribosomal protein S1P [Lactobacillus salivarius CECT 5713]
gi|334308563|gb|EGL99549.1| SSU ribosomal protein S1p [Lactobacillus salivarius NIAS840]
gi|335349028|gb|EGM50528.1| 30S ribosomal protein S1 [Lactobacillus salivarius GJ-24]
gi|380343953|gb|EIA32300.1| 30S ribosomal protein S1 [Lactobacillus salivarius SMXD51]
Length = 397
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 100/217 (46%), Gaps = 40/217 (18%)
Query: 106 DVETSESSSIKSEASPTLAESRRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFI 165
++E S++ I S AE R A E L+ G GKV + FGAFI
Sbjct: 165 EIEPSDNRLILSRKELVQAEREAKRQAVM--------EKLVAGDVVEGKVARLTNFGAFI 216
Query: 166 DFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKL 225
D G DGLVHVS +S V + VGQEVKV+++ +AE GRISL++++
Sbjct: 217 DLGG-VDGLVHVSEISYERVNKPADALKVGQEVKVKVLSVDAEKGRISLSIKQ------- 268
Query: 226 QQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEG 285
+ +P ++ E + +G LEGTVK LT GAF+ + G
Sbjct: 269 ------------------TLPEPWEQVPE----QVAEGDVLEGTVKRLTSFGAFVEVLPG 306
Query: 286 EEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
EG + S+ S A L G++V V+VL +
Sbjct: 307 VEGLVHISQISHKHIAT--PNEVLTSGEKVQVKVLSV 341
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 110/243 (45%), Gaps = 44/243 (18%)
Query: 96 DSAGASDIPSDVETSESSSIKSEASPTLAESRRSRTARKSEMPPVKNE---DLIPGATFT 152
D+ A D+ V + S K S L S+R AR+ V NE G T
Sbjct: 65 DTYKAGDMLDLVVIARIGSDKEGGSYLL--SQRRLEARR-----VWNEIEDKFKAGETIK 117
Query: 153 GKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRI 212
V + G +D G G V S +SD+FV+D+ GQE++++++E R+
Sbjct: 118 APVTQVVKGGLVVDAG--VRGFVPASMVSDHFVEDLNQFK--GQELELKIVEIEPSDNRL 173
Query: 213 SLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKN 272
L+ +E +Q +++A KR + K V G +EG V
Sbjct: 174 ILSRKEL-----VQAEREA-------------------KRQAV-MEKLVAGDVVEGKVAR 208
Query: 273 LTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLT 330
LT GAFI L G +G + SE S + +L+VGQEV V+VL + +G+++L+
Sbjct: 209 LTNFGAFIDLG-GVDGLVHVSEISYERVNK--PADALKVGQEVKVKVLSVDAEKGRISLS 265
Query: 331 MKK 333
+K+
Sbjct: 266 IKQ 268
Score = 46.6 bits (109), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 45/75 (60%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E + G G V+ + FGAF++ +GLVH+S++S + +++ G++V+V++
Sbjct: 279 EQVAEGDVLEGTVKRLTSFGAFVEVLPGVEGLVHISQISHKHIATPNEVLTSGEKVQVKV 338
Query: 203 IEANAETGRISLTMR 217
+ +A R++L+++
Sbjct: 339 LSVDAADHRLALSIK 353
>gi|90961864|ref|YP_535780.1| 30S ribosomal protein S1 [Lactobacillus salivarius UCC118]
gi|90821058|gb|ABD99697.1| SSU ribosomal protein S1P [Lactobacillus salivarius UCC118]
Length = 399
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 88/180 (48%), Gaps = 32/180 (17%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E L+ G GKV + FGAFID G DGLVHVS +S V + VGQEVKV++
Sbjct: 196 EKLVAGDVVEGKVARLTNFGAFIDLGG-VDGLVHVSEISYERVNKPADALKVGQEVKVKV 254
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
+ +AE GRISL++++ + +P ++ E + +
Sbjct: 255 LSVDAEKGRISLSIKQ-------------------------TLPEPWEQVPE----QVAE 285
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G LEGTVK LT GAF+ + G EG + S+ S A L G++V V+VL +
Sbjct: 286 GDVLEGTVKRLTSFGAFVEVLPGVEGLVHISQISHKHIAT--PNEVLTSGEKVQVKVLSV 343
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 110/243 (45%), Gaps = 44/243 (18%)
Query: 96 DSAGASDIPSDVETSESSSIKSEASPTLAESRRSRTARKSEMPPVKNE---DLIPGATFT 152
D+ A D+ V + S K S L S+R AR+ V NE G T
Sbjct: 67 DTYKAGDMLDLVVIARIGSDKEGGSYLL--SQRRLEARR-----VWNEIEDKFKAGETIK 119
Query: 153 GKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRI 212
V + G +D G G V S +SD+FV+D+ GQE++++++E R+
Sbjct: 120 APVTQVVKGGLVVDAG--VRGFVPASMVSDHFVEDLNQFK--GQELELKIVEIEPSDNRL 175
Query: 213 SLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKN 272
L+ +E +Q +++A KR + K V G +EG V
Sbjct: 176 ILSRKEL-----VQAEREA-------------------KRQAV-MEKLVAGDVVEGKVAR 210
Query: 273 LTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLT 330
LT GAFI L G +G + SE S + +L+VGQEV V+VL + +G+++L+
Sbjct: 211 LTNFGAFIDLG-GVDGLVHVSEISYERVNK--PADALKVGQEVKVKVLSVDAEKGRISLS 267
Query: 331 MKK 333
+K+
Sbjct: 268 IKQ 270
Score = 46.6 bits (109), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 45/75 (60%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E + G G V+ + FGAF++ +GLVH+S++S + +++ G++V+V++
Sbjct: 281 EQVAEGDVLEGTVKRLTSFGAFVEVLPGVEGLVHISQISHKHIATPNEVLTSGEKVQVKV 340
Query: 203 IEANAETGRISLTMR 217
+ +A R++L+++
Sbjct: 341 LSVDAADHRLALSIK 355
>gi|292491394|ref|YP_003526833.1| RNA binding S1 domain-containing protein [Nitrosococcus halophilus
Nc4]
gi|291579989|gb|ADE14446.1| RNA binding S1 domain protein [Nitrosococcus halophilus Nc4]
Length = 762
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 60/105 (57%), Gaps = 5/105 (4%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG G V ++ FGAF+D G DGLVH+S L+D FVKD +VS G VKV++
Sbjct: 643 EDLRPGMMLEGVVTNVTAFGAFVDIGVHQDGLVHISALADRFVKDPHEVVSAGDIVKVKV 702
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSK 247
+E + RI LTMR + K Q A+ + R +RS +K
Sbjct: 703 LEIDKARKRIGLTMRLKEAAGKQPQ-----AAAGQARKPKRSKAK 742
>gi|359433116|ref|ZP_09223459.1| uncharacterized protein [Pseudoalteromonas sp. BSi20652]
gi|357920272|dbj|GAA59708.1| uncharacterized protein [Pseudoalteromonas sp. BSi20652]
Length = 793
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 60/108 (55%), Gaps = 2/108 (1%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAF+D G DGLVH+S +++ F+ D +V G VKV
Sbjct: 642 KISDLKPGMILEGVVSNVANFGAFVDVGVHQDGLVHISAITNKFISDPREVVKAGDIVKV 701
Query: 201 RLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKP 248
+++E +A RIS TMR DDI K A S K +T R S+P
Sbjct: 702 KVVEVDAARKRISFTMRLDDDID--TSNKTAAPSAQKPQTARTKNSQP 747
>gi|168185953|ref|ZP_02620588.1| protein YhgF [Clostridium botulinum C str. Eklund]
gi|169295878|gb|EDS78011.1| protein YhgF [Clostridium botulinum C str. Eklund]
Length = 718
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 53/74 (71%)
Query: 145 LIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIE 204
L PG TG VR++ FGAF+D G DGLVH+S+LSD FVK+ IV VG V+V+++E
Sbjct: 645 LKPGMMLTGTVRNVADFGAFVDIGVHQDGLVHISQLSDKFVKNPLDIVKVGDIVEVKVLE 704
Query: 205 ANAETGRISLTMRE 218
+ + GRISL+M++
Sbjct: 705 VDEKRGRISLSMKK 718
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP K+ + + G L GTV+N+ GAF+ + ++G + S+ SD
Sbjct: 624 RDPREELPKPIFKKGIVDINQLKPGMMLTGTVRNVADFGAFVDIGVHQDGLVHISQLSDK 683
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKK 333
N + ++VG V V+VL + RG+++L+MKK
Sbjct: 684 FVKNPL--DIVKVGDIVEVKVLEVDEKRGRISLSMKK 718
>gi|347731609|ref|ZP_08864702.1| hypothetical protein DA2_0973 [Desulfovibrio sp. A2]
gi|347519657|gb|EGY26809.1| hypothetical protein DA2_0973 [Desulfovibrio sp. A2]
Length = 741
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 52/75 (69%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVHVS+LSD FV+D G +V+ G+ V+VR+
Sbjct: 663 DDLEPGMVLPGIVTNVTAFGAFVDIGVHRDGLVHVSQLSDRFVRDPGEVVAPGRMVRVRV 722
Query: 203 IEANAETGRISLTMR 217
+E + GR+SL M+
Sbjct: 723 LEVDRARGRVSLAMK 737
>gi|436841261|ref|YP_007325639.1| transcriptional accessory protein [Desulfovibrio hydrothermalis
AM13 = DSM 14728]
gi|432170167|emb|CCO23538.1| transcriptional accessory protein [Desulfovibrio hydrothermalis
AM13 = DSM 14728]
Length = 716
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 51/77 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL G G V ++ FGAF+D G DGLVH+SRL+D FVK+ +V G VKV+++
Sbjct: 639 DLRDGMVLNGVVTNVTAFGAFVDVGVHQDGLVHISRLADQFVKNPAEVVHPGLAVKVKVL 698
Query: 204 EANAETGRISLTMRESD 220
E + E RISL+MRESD
Sbjct: 699 EVDLERKRISLSMRESD 715
>gi|385209032|ref|ZP_10035900.1| transcriptional accessory protein [Burkholderia sp. Ch1-1]
gi|385181370|gb|EIF30646.1| transcriptional accessory protein [Burkholderia sp. Ch1-1]
Length = 829
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 52/82 (63%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAFID G DGLVHVS +S F+KD +V GQ VKV
Sbjct: 696 KVSDLTPGMVLEGVVTNVAAFGAFIDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQIVKV 755
Query: 201 RLIEANAETGRISLTMRESDDI 222
+++E + + RI+LTMR D++
Sbjct: 756 KVLEVDVKRQRIALTMRMDDEV 777
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 15/114 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT F +G + LEG V N+ GAFI + +
Sbjct: 667 VRDILLELEKPGRDPRPEFKTATFREGVEKVSDLTPGMVLEGVVTNVAAFGAFIDIGVHQ 726
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKEDDVG 338
+G + S S + ++ GQ V V+VL + R ++ LTM+ +D+VG
Sbjct: 727 DGLVHVSAMSTKFIKDPH--EVVKAGQIVKVKVLEVDVKRQRIALTMRMDDEVG 778
>gi|409991218|ref|ZP_11274500.1| Tex-like protein [Arthrospira platensis str. Paraca]
gi|409937925|gb|EKN79307.1| Tex-like protein [Arthrospira platensis str. Paraca]
Length = 718
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 51/74 (68%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S+L+D FV+D IV VGQ VKV+++
Sbjct: 642 DLKPGMELEGIVTNVVNFGAFVDVGVHQDGLVHISQLADRFVEDPQKIVRVGQVVKVKVL 701
Query: 204 EANAETGRISLTMR 217
E N + RISL+MR
Sbjct: 702 EVNEKLNRISLSMR 715
Score = 38.9 bits (89), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 243 RSTSKPGQKRDEMKTTKFVK-GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFA 301
R+ K RD++K +K G +LEG V N+ GAF+ + ++G + S+ +D
Sbjct: 625 RAEFKYATFRDDIKEVSDLKPGMELEGIVTNVVNFGAFVDVGVHQDGLVHISQLADRFVE 684
Query: 302 NMMGGSSLQVGQEVSVRVLRISR--GQVTLTMK 332
+ ++VGQ V V+VL ++ +++L+M+
Sbjct: 685 D--PQKIVRVGQVVKVKVLEVNEKLNRISLSMR 715
>gi|238027085|ref|YP_002911316.1| RNA binding S1 [Burkholderia glumae BGR1]
gi|237876279|gb|ACR28612.1| RNA binding S1 [Burkholderia glumae BGR1]
Length = 776
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 53/81 (65%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL+PG G V ++ FGAF+D G DGLVHVS +S F+KD +V GQ VKV
Sbjct: 649 KVSDLLPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQVVKV 708
Query: 201 RLIEANAETGRISLTMRESDD 221
+++E + + RI+LTMR +D+
Sbjct: 709 KVLEVDVKRQRIALTMRLADE 729
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKF----------VKGQDLEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT F + G LEG V N+ GAF+ + +
Sbjct: 620 VRDILAELEKPGRDPRPEFKTATFREGVEKVSDLLPGMVLEGVVTNVAAFGAFVDIGVHQ 679
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKEDDVGS 339
+G + S S + ++ GQ V V+VL + R ++ LTM+ D+ G+
Sbjct: 680 DGLVHVSAMSTKFIKDPH--EVVKAGQVVKVKVLEVDVKRQRIALTMRLADEAGA 732
>gi|407472790|ref|YP_006787190.1| RNA-binding S1 domain-containing protein [Clostridium acidurici 9a]
gi|407049298|gb|AFS77343.1| RNA-binding S1 domain-containing protein [Clostridium acidurici 9a]
Length = 718
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 53/78 (67%)
Query: 140 VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
+K EDL TG VR++ FGAFID G DGLVH+S LSD FVK+ I+SVG VK
Sbjct: 639 LKIEDLKEDMILTGTVRNVVDFGAFIDIGVKEDGLVHISNLSDKFVKNPMDIISVGDIVK 698
Query: 200 VRLIEANAETGRISLTMR 217
V++IE + GRI+L+M+
Sbjct: 699 VKIIEVDIPKGRIALSMK 716
Score = 42.7 bits (99), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R P + D +K + L GTV+N+ GAFI + E+G + S SD
Sbjct: 623 RDPREDMPIPVFRSDVLKIEDLKEDMILTGTVRNVVDFGAFIDIGVKEDGLVHISNLSDK 682
Query: 299 GFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMK 332
N M + VG V V+++ I +G++ L+MK
Sbjct: 683 FVKNPM--DIISVGDIVKVKIIEVDIPKGRIALSMK 716
>gi|424780259|ref|ZP_18207139.1| SSU ribosomal protein S1p [Catellicoccus marimammalium M35/04/3]
gi|422843217|gb|EKU27658.1| SSU ribosomal protein S1p [Catellicoccus marimammalium M35/04/3]
Length = 394
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 98/216 (45%), Gaps = 42/216 (19%)
Query: 106 DVETSESSSIKSEASPTLAESRRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFI 165
++E SE+ I S + E +R R E L+ TGKV + FGAF+
Sbjct: 168 EIEPSENRLILSHVAVMNEEKEEARQKRLQE--------LVADEVLTGKVARLTDFGAFV 219
Query: 166 DFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKL 225
D G DGLVHVS ++ + V + VG EV V+++ + E GR+SL+M+
Sbjct: 220 DLGG-VDGLVHVSEIAHHHVAKPSDELKVGDEVTVKILSVDPEEGRVSLSMK-------- 270
Query: 226 QQQKDATASGDKVRTTRRSTSKPGQKR-DEMKTTKFVKGQDLEGTVKNLTRSGAFISLPE 284
AT G P +K DE+ G LEG VK LT GAF+ +
Sbjct: 271 -----ATQKG------------PWEKLADEVAV-----GDVLEGVVKRLTDFGAFVEIFP 308
Query: 285 GEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVL 320
G EG + S+ S A L+ GQEV V+VL
Sbjct: 309 GVEGLVHISQISHKHIAT--PHEVLKPGQEVKVKVL 342
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 64/126 (50%), Gaps = 8/126 (6%)
Query: 125 ESRRSRTARKSEMPPVKN--EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSD 182
E R S + + ++ P + +++ G G V+ + FGAF++ +GLVH+S++S
Sbjct: 262 EGRVSLSMKATQKGPWEKLADEVAVGDVLEGVVKRLTDFGAFVEIFPGVEGLVHISQISH 321
Query: 183 NFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTR 242
+ ++ GQEVKV++++ N RI L+++ L++Q +A + T
Sbjct: 322 KHIATPHEVLKPGQEVKVKVLDMNPAERRIGLSLK------ALEEQPEAFVGEKEEETMV 375
Query: 243 RSTSKP 248
T +P
Sbjct: 376 YETEEP 381
>gi|219848105|ref|YP_002462538.1| RNA binding S1 domain-containing protein [Chloroflexus aggregans
DSM 9485]
gi|219542364|gb|ACL24102.1| RNA binding S1 domain protein [Chloroflexus aggregans DSM 9485]
Length = 500
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 110/233 (47%), Gaps = 21/233 (9%)
Query: 139 PVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEV 198
P + +DL PG GKV SI +G F+D G DGLVH+S +SD + +V +G V
Sbjct: 94 PRRLKDLQPGMELEGKVTSIALYGIFVDVGVGRDGLVHISEMSDRRIDTPSELVQIGDTV 153
Query: 199 KVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRST-SKPGQKRDEMKT 257
KV + + + RISLTM + G+K R +R+S ++P +R E+
Sbjct: 154 KVWVKSVDLDARRISLTMLNP-------------SRGEKPRRSRQSQPAQPQPRRQEVDR 200
Query: 258 TKFVK---GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQE 314
K G+ +EG + GAF + G++G + SE S+ +++VG+
Sbjct: 201 EKLASLKVGEIVEGVITGFAPFGAFADIGVGKDGLIHISELSEGRVEKPE--DAVKVGER 258
Query: 315 VSVRVLRI-SRG-QVTLTMKKEDDVGSNLQLTQGVIHAATNPFVLAFRSNKDI 365
+VL I G +++L++++ QL G I T + F + DI
Sbjct: 259 YQFKVLEIDGEGTRISLSLRRAQRTQRMQQLEPGQIIEGTVSGIATFGAFVDI 311
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 39/174 (22%)
Query: 127 RRSRTARKSEMPPVKNE-------DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSR 179
RRSR ++ ++ P + E L G G + PFGAF D G DGL+H+S
Sbjct: 181 RRSRQSQPAQPQPRRQEVDREKLASLKVGEIVEGVITGFAPFGAFADIGVGKDGLIHISE 240
Query: 180 LSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVR 239
LS+ V+ V VG+ + +++E + E RISL++R + ++QQ
Sbjct: 241 LSEGRVEKPEDAVKVGERYQFKVLEIDGEGTRISLSLRRAQRTQRMQQ------------ 288
Query: 240 TTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTS 293
GQ +EGTV + GAF+ + G +G + S
Sbjct: 289 --------------------LEPGQIIEGTVSGIATFGAFVDIGVGRDGLVHIS 322
Score = 55.8 bits (133), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 59/97 (60%), Gaps = 7/97 (7%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
+ + L PG G V I FGAF+D G DGLVH+S L+ + V V +V VG +VKV
Sbjct: 285 RMQQLEPGQIIEGTVSGIATFGAFVDIGVGRDGLVHISALAPHRVAKVEDVVKVGDKVKV 344
Query: 201 RLIEANAETGRISLTMRESDDISKLQQQKDATASGDK 237
+++ + ++ RISLTMR L++++ AT +GD+
Sbjct: 345 KVLGVDPQSKRISLTMR-------LEEEQPATTAGDE 374
>gi|187924504|ref|YP_001896146.1| RNA binding S1 domain-containing protein [Burkholderia phytofirmans
PsJN]
gi|187715698|gb|ACD16922.1| RNA binding S1 domain protein [Burkholderia phytofirmans PsJN]
Length = 782
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 52/82 (63%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAFID G DGLVHVS +S F+KD +V GQ VKV
Sbjct: 649 KVSDLTPGMVLEGVVTNVAAFGAFIDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQIVKV 708
Query: 201 RLIEANAETGRISLTMRESDDI 222
+++E + + RI+LTMR D++
Sbjct: 709 KVLEVDVKRQRIALTMRMDDEV 730
Score = 43.9 bits (102), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 15/114 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT F +G + LEG V N+ GAFI + +
Sbjct: 620 VRDILLELEKPGRDPRPEFKTATFREGVEKVSDLTPGMVLEGVVTNVAAFGAFIDIGVHQ 679
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKEDDVG 338
+G + S S + ++ GQ V V+VL + R ++ LTM+ +D+VG
Sbjct: 680 DGLVHVSAMSTKFIKD--PHEVVKAGQIVKVKVLEVDVKRQRIALTMRMDDEVG 731
>gi|256825135|ref|YP_003149095.1| 30S ribosomal protein S1 [Kytococcus sedentarius DSM 20547]
gi|256688528|gb|ACV06330.1| SSU ribosomal protein S1P [Kytococcus sedentarius DSM 20547]
Length = 492
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 112/220 (50%), Gaps = 35/220 (15%)
Query: 126 SRRSRTAR-KSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNF 184
SRR+ + +SE+ ++L G G V SI FGAF+D G DGLVHVS LS
Sbjct: 183 SRRAWLEQTQSEVRTSFLKELQRGQVRPGVVSSIVNFGAFVDLGG-VDGLVHVSELSWKH 241
Query: 185 VKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRS 244
+ G +V VGQEV V +++ + + R+SL+++ + Q+D
Sbjct: 242 IDHPGEVVEVGQEVTVEVLDVDMDRERVSLSLKAT--------QED-------------- 279
Query: 245 TSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMM 304
P Q + GQ + G V L GAF+ + +G EG + SE ++ +
Sbjct: 280 ---PWQ----LFARTHAIGQIVPGKVTKLVPFGAFVRVEDGIEGLVHISELAERHVE--L 330
Query: 305 GGSSLQVGQEVSVRVLRIS--RGQVTLTMKKEDDVGSNLQ 342
++QVGQEV VRV+ I R +++L++K+ + VG++++
Sbjct: 331 PEQAVQVGQEVFVRVIDIDLERRRISLSLKQANQVGTDIE 370
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 51/88 (57%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G GKV + PFGAF+ +GLVH+S L++ V+ V VGQEV VR+I+ +
Sbjct: 291 GQIVPGKVTKLVPFGAFVRVEDGIEGLVHISELAERHVELPEQAVQVGQEVFVRVIDIDL 350
Query: 208 ETGRISLTMRESDDISKLQQQKDATASG 235
E RISL++++++ + + D T G
Sbjct: 351 ERRRISLSLKQANQVGTDIEDFDPTLYG 378
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 83/186 (44%), Gaps = 34/186 (18%)
Query: 149 ATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAE 208
TG V + G +D G G + S + V+D+ VGQE++ ++IE +
Sbjct: 121 GVVTGSVIEVVKGGLIVDIG--LRGFLPASLVEMRRVRDLQP--YVGQEIEAKIIELDKN 176
Query: 209 TGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEG 268
+ L+ R + L+Q + +VRT+ + GQ R G
Sbjct: 177 RNNVVLSRR-----AWLEQTQ------SEVRTSFLKELQRGQVR--------------PG 211
Query: 269 TVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQ 326
V ++ GAF+ L G +G + SE S + G ++VGQEV+V VL + R +
Sbjct: 212 VVSSIVNFGAFVDLG-GVDGLVHVSELSWKHIDH--PGEVVEVGQEVTVEVLDVDMDRER 268
Query: 327 VTLTMK 332
V+L++K
Sbjct: 269 VSLSLK 274
>gi|91784192|ref|YP_559398.1| S1 RNA-binding domain-containing protein [Burkholderia xenovorans
LB400]
gi|91688146|gb|ABE31346.1| S1 RNA binding domain protein [Burkholderia xenovorans LB400]
Length = 781
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 52/82 (63%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAFID G DGLVHVS +S F+KD +V GQ VKV
Sbjct: 649 KVSDLTPGMVLEGVVTNVAAFGAFIDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQIVKV 708
Query: 201 RLIEANAETGRISLTMRESDDI 222
+++E + + RI+LTMR D++
Sbjct: 709 KVLEVDVKRQRIALTMRMDDEV 730
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT F +G + LEG V N+ GAFI + +
Sbjct: 620 VRDILLELEKPGRDPRPEFKTATFREGVEKVSDLTPGMVLEGVVTNVAAFGAFIDIGVHQ 679
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKEDDVGS 339
+G + S S + ++ GQ V V+VL + R ++ LTM+ +D+VG+
Sbjct: 680 DGLVHVSAMSTKFIKD--PHEVVKAGQIVKVKVLEVDVKRQRIALTMRMDDEVGA 732
>gi|357383463|ref|YP_004898187.1| transcription accessory protein (S1 RNA-binding domain)
[Pelagibacterium halotolerans B2]
gi|351592100|gb|AEQ50437.1| transcription accessory protein (S1 RNA-binding domain)
[Pelagibacterium halotolerans B2]
Length = 767
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 50/74 (67%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVHVS+L+D F+KD +V G VKV+++
Sbjct: 647 DLRPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFIKDAHEVVKAGDVVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E +A+ RISL+MR
Sbjct: 707 EVDAKRKRISLSMR 720
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 15/110 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT F +G + LEGTV N+ GAF+ + +
Sbjct: 615 VRDILAELEKPGRDPRPEFKTATFAEGIEEISDLRPGMMLEGTVTNVAAFGAFVDIGVHQ 674
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKE 334
+G + S+ +D + ++ G V V+VL + R +++L+M+++
Sbjct: 675 DGLVHVSQLADRFIKD--AHEVVKAGDVVKVKVLEVDAKRKRISLSMRRD 722
>gi|253690273|ref|YP_003019463.1| RNA binding S1 domain-containing protein [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|251756851|gb|ACT14927.1| RNA binding S1 domain protein [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 777
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S L+D+FV D +V G VKV+++
Sbjct: 646 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADHFVDDPHKVVKAGDIVKVKVM 705
Query: 204 EANAETGRISLTMRESDDISKLQQQK-DATASGDKVRTTRRSTSK 247
E + + RI+LTMR + + ++ TA GD + R+ST K
Sbjct: 706 EVDLQRKRIALTMRLDEQPGETSSRRGGGTARGDNNTSPRQSTGK 750
>gi|28210090|ref|NP_781034.1| transcription accessory protein [Clostridium tetani E88]
gi|28202526|gb|AAO34971.1| transcription accessory protein [Clostridium tetani E88]
Length = 718
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 50/74 (67%)
Query: 145 LIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIE 204
L PG TG VR++ FGAF+D G DGLVH+S LSD FVK +V VG V VR++E
Sbjct: 645 LKPGMALTGTVRNVADFGAFVDIGVHQDGLVHISELSDKFVKHPLDVVKVGDIVDVRVLE 704
Query: 205 ANAETGRISLTMRE 218
+ + GRISL+M++
Sbjct: 705 VDEKRGRISLSMKQ 718
Score = 45.8 bits (107), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP K + + G L GTV+N+ GAF+ + ++G + SE SD
Sbjct: 624 RDPREDLPKPIFKTGVIDINQLKPGMALTGTVRNVADFGAFVDIGVHQDGLVHISELSDK 683
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKK 333
+ + ++VG V VRVL + RG+++L+MK+
Sbjct: 684 FVKHPL--DVVKVGDIVDVRVLEVDEKRGRISLSMKQ 718
>gi|282898392|ref|ZP_06306383.1| RNA binding S1 [Raphidiopsis brookii D9]
gi|281196923|gb|EFA71828.1| RNA binding S1 [Raphidiopsis brookii D9]
Length = 718
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 53/77 (68%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL G G + ++ FGAF+D G DGLVH+S+L+D FV+D +IV VGQ VKVR++
Sbjct: 642 DLTVGMELEGIITNVANFGAFVDIGVHQDGLVHISQLADRFVEDPKTIVKVGQLVKVRVL 701
Query: 204 EANAETGRISLTMRESD 220
E N + RISL+MR+ +
Sbjct: 702 EVNEKLKRISLSMRKEN 718
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 15/111 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKG----------QDLEGTVKNLTRSGAFISLPEGE 286
+R R KPG+ R E K F +G +LEG + N+ GAF+ + +
Sbjct: 610 LRDILRELEKPGRDPRAEFKYATFREGIREIRDLTVGMELEGIITNVANFGAFVDIGVHQ 669
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISR--GQVTLTMKKED 335
+G + S+ +D + + ++VGQ V VRVL ++ +++L+M+KE+
Sbjct: 670 DGLVHISQLADRFVED--PKTIVKVGQLVKVRVLEVNEKLKRISLSMRKEN 718
>gi|390559271|ref|ZP_10243622.1| RNA binding S1 domain protein [Nitrolancetus hollandicus Lb]
gi|390174148|emb|CCF82915.1| RNA binding S1 domain protein [Nitrolancetus hollandicus Lb]
Length = 459
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 99/193 (51%), Gaps = 34/193 (17%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E+L G T G+V SI FGAF+D G DGLVH+S LS + VK ++ VG+EV V +
Sbjct: 223 EELHEGETRRGRVTSICDFGAFVDIGG-ADGLVHLSELSWSRVKHPAEVLKVGEEVDVYV 281
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
+ NA +I+L+++ R+ ++P + K+
Sbjct: 282 LGINANEKKIALSIK-------------------------RTQAEPWSQ----VAVKYEV 312
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
GQ + GTV L GAF + +G EG + SE S+ A+ ++ GQE+ +R++RI
Sbjct: 313 GQLVRGTVTQLANFGAFARIEDGVEGLIHVSELSEQRIAHPR--QAVSEGQELILRIIRI 370
Query: 323 --SRGQVTLTMKK 333
+R ++ L++++
Sbjct: 371 DPARRRMGLSLRR 383
Score = 43.9 bits (102), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G G V + FGAF +GL+HVS LS+ + VS GQE+ +R+I +
Sbjct: 313 GQLVRGTVTQLANFGAFARIEDGVEGLIHVSELSEQRIAHPRQAVSEGQELILRIIRIDP 372
Query: 208 ETGRISLTMRESDDISKLQQQKDATASGD 236
R+ L++R + + S ++ A A GD
Sbjct: 373 ARRRMGLSLRRALEAS---DEEVAAALGD 398
>gi|393776851|ref|ZP_10365145.1| transcriptional accessory protein Tex [Ralstonia sp. PBA]
gi|392716208|gb|EIZ03788.1| transcriptional accessory protein Tex [Ralstonia sp. PBA]
Length = 778
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 51/77 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS+ FVKD +V GQ V+V+++
Sbjct: 656 DLVPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHISALSNKFVKDPYEVVKAGQIVRVKVM 715
Query: 204 EANAETGRISLTMRESD 220
E +A+ RI L+MR D
Sbjct: 716 EVDAKRNRIGLSMRLDD 732
>gi|317049904|ref|YP_004117552.1| Tex-like protein [Pantoea sp. At-9b]
gi|316951521|gb|ADU70996.1| Tex-like protein [Pantoea sp. At-9b]
Length = 777
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 63/107 (58%), Gaps = 6/107 (5%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LSD FV+D +V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKAGDIVKVKVM 706
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQ 250
E + + RI+LTMR +Q ++ A G R+ + +++P Q
Sbjct: 707 EVDLQRKRIALTMRLD------EQPGESNARGAGNRSAGKESARPAQ 747
>gi|291571476|dbj|BAI93748.1| probable transcription accessory protein [Arthrospira platensis
NIES-39]
Length = 718
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 50/74 (67%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L+D FV+D IV VGQ VKV+++
Sbjct: 642 DLKPGMELEGIVTNVVNFGAFVDVGVHQDGLVHISELADRFVEDPQKIVRVGQVVKVKVL 701
Query: 204 EANAETGRISLTMR 217
E N + RISL+MR
Sbjct: 702 EVNEKLNRISLSMR 715
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 5/107 (4%)
Query: 229 KDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK-GQDLEGTVKNLTRSGAFISLPEGEE 287
KD A +K R+ K RD++K +K G +LEG V N+ GAF+ + ++
Sbjct: 611 KDIIAELEKPGRDPRAEFKYATFRDDIKEVSDLKPGMELEGIVTNVVNFGAFVDVGVHQD 670
Query: 288 GFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISR--GQVTLTMK 332
G + SE +D + ++VGQ V V+VL ++ +++L+M+
Sbjct: 671 GLVHISELADRFVED--PQKIVRVGQVVKVKVLEVNEKLNRISLSMR 715
>gi|30250132|ref|NP_842202.1| S1 RNA-binding domain-containing protein [Nitrosomonas europaea
ATCC 19718]
gi|30139239|emb|CAD86109.1| S1 RNA binding domain [Nitrosomonas europaea ATCC 19718]
Length = 801
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 60/102 (58%), Gaps = 1/102 (0%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAFID G DGLVHVS L++ F+KD IV GQ VKVR++
Sbjct: 672 DLQPGMILEGVVTNVAAFGAFIDIGVHQDGLVHVSALANKFIKDPHQIVKPGQVVKVRVL 731
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRST 245
+A RISLTMR DDI + Q + + R +RR +
Sbjct: 732 TVDAVRQRISLTMR-IDDIPETISQPETRKARPDDRQSRRGS 772
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 21/114 (18%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT F +G + LEG V N+ GAFI + +
Sbjct: 640 VRDILTELEKPGRDPRPEFKTAVFQEGIESITDLQPGMILEGVVTNVAAFGAFIDIGVHQ 699
Query: 287 EGFLPTSEESDDGFANMMGGSSLQV---GQEVSVRVLRIS--RGQVTLTMKKED 335
+G + S AN Q+ GQ V VRVL + R +++LTM+ +D
Sbjct: 700 DGLVHVS-----ALANKFIKDPHQIVKPGQVVKVRVLTVDAVRQRISLTMRIDD 748
>gi|217970449|ref|YP_002355683.1| RNA binding S1 domain-containing protein [Thauera sp. MZ1T]
gi|217507776|gb|ACK54787.1| RNA binding S1 domain protein [Thauera sp. MZ1T]
Length = 795
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 54/81 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S LS+ FVKD S+V GQ VKV++
Sbjct: 645 KDLEPGMLLEGVVTNVTNFGAFVDIGVHQDGLVHISALSNTFVKDPHSVVKAGQVVKVKV 704
Query: 203 IEANAETGRISLTMRESDDIS 223
+E + RI+LTMR D+++
Sbjct: 705 LEVDIPRHRIALTMRLGDEVT 725
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 15/104 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E +T F +G + LEG V N+T GAF+ + ++G + S
Sbjct: 623 KPGRDPRPEFRTATFREGVETLKDLEPGMLLEGVVTNVTNFGAFVDIGVHQDGLVHISAL 682
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKEDDV 337
S+ + S ++ GQ V V+VL I R ++ LTM+ D+V
Sbjct: 683 SNTFVKDPH--SVVKAGQVVKVKVLEVDIPRHRIALTMRLGDEV 724
>gi|359764838|ref|ZP_09268679.1| putative transcriptional accessory protein [Gordonia
polyisoprenivorans NBRC 16320]
gi|359317817|dbj|GAB21512.1| putative transcriptional accessory protein [Gordonia
polyisoprenivorans NBRC 16320]
Length = 809
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 52/83 (62%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAF+D G DGLVHVS +SD FV D +V GQ V+V
Sbjct: 661 KVADLTPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSDRFVSDPHEVVRSGQVVRV 720
Query: 201 RLIEANAETGRISLTMRESDDIS 223
+++E + E RI LT+R D++S
Sbjct: 721 KVLEVDVERQRIGLTLRLQDEVS 743
>gi|312796107|ref|YP_004029029.1| transcription accessory protein (S1 RNA binding domain)
[Burkholderia rhizoxinica HKI 454]
gi|312167882|emb|CBW74885.1| Transcription accessory protein (S1 RNA binding domain)
[Burkholderia rhizoxinica HKI 454]
Length = 801
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 50/78 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAFID G DGLVHVS +S FVKD +V GQ V V+++
Sbjct: 675 DLSPGMILEGVVTNVAAFGAFIDIGVHQDGLVHVSAMSTKFVKDPHEVVKAGQVVTVKVL 734
Query: 204 EANAETGRISLTMRESDD 221
E + + RISLTMR SDD
Sbjct: 735 EVDLKRQRISLTMRLSDD 752
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 15/112 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT F +G + LEG V N+ GAFI + +
Sbjct: 643 VRDILGELEKPGRDPRPEFKTATFREGVETLADLSPGMILEGVVTNVAAFGAFIDIGVHQ 702
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDD 336
+G + S S + ++ GQ V+V+VL + R +++LTM+ DD
Sbjct: 703 DGLVHVSAMSTKFVKD--PHEVVKAGQVVTVKVLEVDLKRQRISLTMRLSDD 752
>gi|378720554|ref|YP_005285442.1| putative RNA-binding protein [Gordonia polyisoprenivorans VH2]
gi|375755297|gb|AFA76076.1| putative RNA-binding protein [Gordonia polyisoprenivorans VH2]
Length = 813
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 52/83 (62%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAF+D G DGLVHVS +SD FV D +V GQ V+V
Sbjct: 661 KVADLTPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSDRFVSDPHEVVRSGQVVRV 720
Query: 201 RLIEANAETGRISLTMRESDDIS 223
+++E + E RI LT+R D++S
Sbjct: 721 KVLEVDVERQRIGLTLRLQDEVS 743
>gi|424776874|ref|ZP_18203849.1| transcription accessory protein [Alcaligenes sp. HPC1271]
gi|422887914|gb|EKU30308.1| transcription accessory protein [Alcaligenes sp. HPC1271]
Length = 782
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 50/78 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FVKD +V VGQ VKV++
Sbjct: 661 DLTPGMILEGVVTNVANFGAFVDVGVHQDGLVHISALSETFVKDPRDVVRVGQTVKVKVQ 720
Query: 204 EANAETGRISLTMRESDD 221
E + RI LTMR +DD
Sbjct: 721 EVDVARKRIGLTMRLNDD 738
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 15/114 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E T KF +G + LEG V N+ GAF+ + +
Sbjct: 629 VRDIFNEIEKPGRDPRPEFTTAKFQEGINSLNDLTPGMILEGVVTNVANFGAFVDVGVHQ 688
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRV--LRISRGQVTLTMKKEDDVG 338
+G + S S+ + ++VGQ V V+V + ++R ++ LTM+ DD G
Sbjct: 689 DGLVHISALSETFVKDPR--DVVRVGQTVKVKVQEVDVARKRIGLTMRLNDDSG 740
>gi|150388634|ref|YP_001318683.1| RNA-binding S1 domain-containing protein [Alkaliphilus
metalliredigens QYMF]
gi|149948496|gb|ABR47024.1| RNA binding S1 domain protein [Alkaliphilus metalliredigens QYMF]
Length = 728
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 60/91 (65%), Gaps = 7/91 (7%)
Query: 134 KSEMP-PV------KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVK 186
+ EMP P+ K EDL TG VR++ FGAF+D G DGLVHVS+LS+ FVK
Sbjct: 635 REEMPMPIFRSDVLKMEDLKLDMVMTGTVRNVVDFGAFVDIGVKQDGLVHVSQLSNKFVK 694
Query: 187 DVGSIVSVGQEVKVRLIEANAETGRISLTMR 217
+ +VSVG EV+V++I + E G++SL+M+
Sbjct: 695 NPMDVVSVGDEVEVKIIGIDVERGKVSLSMK 725
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 15/101 (14%)
Query: 245 TSKPGQK-RDEMKTTKF----VKGQDLE------GTVKNLTRSGAFISLPEGEEGFLPTS 293
KPG+ R+EM F +K +DL+ GTV+N+ GAF+ + ++G + S
Sbjct: 627 VKKPGRDPREEMPMPIFRSDVLKMEDLKLDMVMTGTVRNVVDFGAFVDIGVKQDGLVHVS 686
Query: 294 EESDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMK 332
+ S+ N M S VG EV V+++ I RG+V+L+MK
Sbjct: 687 QLSNKFVKNPMDVVS--VGDEVEVKIIGIDVERGKVSLSMK 725
>gi|423016342|ref|ZP_17007063.1| transcription accessory protein [Achromobacter xylosoxidans AXX-A]
gi|338780596|gb|EGP45001.1| transcription accessory protein [Achromobacter xylosoxidans AXX-A]
Length = 793
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L++ FVKD +V VGQ V V+++
Sbjct: 666 DLYPGMVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVSVKVL 725
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQ 250
E + R++LTMR +D ++ DA G + R RR G+
Sbjct: 726 EVDVARKRVALTMRMNDAAVPARRGADAAPKGGE-RGGRRPQGDSGR 771
Score = 43.1 bits (100), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 15/111 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT +F +G + LEG V N+ GAF+ + +
Sbjct: 634 VRDIFAELEKPGRDPRPEFKTAQFKEGVETLNDLYPGMVLEGVVTNVANFGAFVDIGVHQ 693
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKED 335
+G + S ++ + ++VGQ VSV+VL ++R +V LTM+ D
Sbjct: 694 DGLVHISALAEKFVKDPR--DVVRVGQTVSVKVLEVDVARKRVALTMRMND 742
>gi|241166280|ref|XP_002409833.1| protein tex, putative [Ixodes scapularis]
gi|215494654|gb|EEC04295.1| protein tex, putative [Ixodes scapularis]
Length = 616
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FVKD +V VGQ VKV++
Sbjct: 388 DLTPGMILEGVVTNVANFGAFVDVGVHQDGLVHISALSETFVKDPRDVVRVGQTVKVKVQ 447
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQ 250
E + RI LTMR +DD + +++D A V T S + G+
Sbjct: 448 EVDVARKRIGLTMRLNDDSAP--KEQDIAAISQSVLTASASPAAMGE 492
Score = 43.1 bits (100), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 19/134 (14%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E T KF +G + LEG V N+ GAF+ + +
Sbjct: 356 VRDIFNEIEKPGRDPRPEFTTAKFQEGINSLNDLTPGMILEGVVTNVANFGAFVDVGVHQ 415
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRV--LRISRGQVTLTMKKEDDVGSNLQ-- 342
+G + S S+ + ++VGQ V V+V + ++R ++ LTM+ DD Q
Sbjct: 416 DGLVHISALSETFVKD--PRDVVRVGQTVKVKVQEVDVARKRIGLTMRLNDDSAPKEQDI 473
Query: 343 --LTQGVIHAATNP 354
++Q V+ A+ +P
Sbjct: 474 AAISQSVLTASASP 487
>gi|242280672|ref|YP_002992801.1| RNA binding S1 domain-containing protein [Desulfovibrio salexigens
DSM 2638]
gi|242123566|gb|ACS81262.1| RNA binding S1 domain protein [Desulfovibrio salexigens DSM 2638]
Length = 716
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 54/77 (70%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL G G V ++ FGAF+D G DGLVH+SR++D+FV+D ++V GQ +KV+++
Sbjct: 639 DLREGMILNGIVTNVTAFGAFVDIGVHQDGLVHISRMADDFVRDPATVVHPGQALKVKVL 698
Query: 204 EANAETGRISLTMRESD 220
+ + + RISL+MR+SD
Sbjct: 699 DVDIQRKRISLSMRQSD 715
>gi|397654307|ref|YP_006494990.1| hypothetical protein CULC0102_1556 [Corynebacterium ulcerans 0102]
gi|393403263|dbj|BAM27755.1| hypothetical protein CULC0102_1556 [Corynebacterium ulcerans 0102]
Length = 767
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 53/81 (65%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DLIPG G V ++ FGAF+D G DGLVHVS L+D FV + +V GQ VKV
Sbjct: 632 KISDLIPGMILEGTVTNVAAFGAFVDVGVHQDGLVHVSALADTFVSNPHDVVRSGQVVKV 691
Query: 201 RLIEANAETGRISLTMRESDD 221
+++E + E RISL+M+ SD+
Sbjct: 692 KVMEVDPERKRISLSMKLSDE 712
Score = 43.9 bits (102), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 256 KTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEV 315
K + + G LEGTV N+ GAF+ + ++G + S +D +N ++ GQ V
Sbjct: 632 KISDLIPGMILEGTVTNVAAFGAFVDVGVHQDGLVHVSALADTFVSNPH--DVVRSGQVV 689
Query: 316 SVRVLRIS--RGQVTLTMKKEDDVGSN 340
V+V+ + R +++L+MK D+ G+N
Sbjct: 690 KVKVMEVDPERKRISLSMKLSDEPGAN 716
>gi|337291046|ref|YP_004630067.1| hypothetical protein CULC22_01438 [Corynebacterium ulcerans
BR-AD22]
gi|334699352|gb|AEG84148.1| hypothetical protein CULC22_01438 [Corynebacterium ulcerans
BR-AD22]
Length = 767
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 53/81 (65%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DLIPG G V ++ FGAF+D G DGLVHVS L+D FV + +V GQ VKV
Sbjct: 632 KISDLIPGMILEGTVTNVAAFGAFVDVGVHQDGLVHVSALADTFVSNPHDVVRSGQVVKV 691
Query: 201 RLIEANAETGRISLTMRESDD 221
+++E + E RISL+M+ SD+
Sbjct: 692 KVMEVDPERKRISLSMKLSDE 712
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 256 KTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEV 315
K + + G LEGTV N+ GAF+ + ++G + S +D +N ++ GQ V
Sbjct: 632 KISDLIPGMILEGTVTNVAAFGAFVDVGVHQDGLVHVSALADTFVSNPH--DVVRSGQVV 689
Query: 316 SVRVLRIS--RGQVTLTMKKEDDVGSN 340
V+V+ + R +++L+MK D+ G++
Sbjct: 690 KVKVMEVDPERKRISLSMKLSDEPGAS 716
>gi|238898793|ref|YP_002924475.1| transcriptional accessory protein, RNA binding S1 domain protein
[Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
gi|229466553|gb|ACQ68327.1| transcriptional accessory protein, RNA binding S1 domain protein
[Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
Length = 768
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 64/106 (60%), Gaps = 3/106 (2%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DLIPG G V +I FGAFID G DGLVH+S +++ FV D ++ G V+V++
Sbjct: 639 KDLIPGMILQGSVTNITHFGAFIDIGVHQDGLVHISSMANQFVTDPHQLIKTGDIVQVKV 698
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKP 248
+ + E RI+L+MR + I+ +KD TAS ++ + R + +P
Sbjct: 699 LSIDMERKRIALSMRLDEQIA---DKKDKTASENESKEKRLTKKRP 741
Score = 39.3 bits (90), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 15/114 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKF----------VKGQDLEGTVKNLTRSGAFISLPEGE 286
VR + KPG+ R E KT F + G L+G+V N+T GAFI + +
Sbjct: 608 VRDILKELEKPGRDPRPEFKTPIFSDEIETLKDLIPGMILQGSVTNITHFGAFIDIGVHQ 667
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDDVG 338
+G + S ++ + ++ G V V+VL I R ++ L+M+ ++ +
Sbjct: 668 DGLVHISSMANQFVTD--PHQLIKTGDIVQVKVLSIDMERKRIALSMRLDEQIA 719
>gi|384515958|ref|YP_005711050.1| hypothetical protein CULC809_01424 [Corynebacterium ulcerans 809]
gi|334697159|gb|AEG81956.1| hypothetical protein CULC809_01424 [Corynebacterium ulcerans 809]
Length = 767
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 53/81 (65%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DLIPG G V ++ FGAF+D G DGLVHVS L+D FV + +V GQ VKV
Sbjct: 632 KISDLIPGMILEGTVTNVAAFGAFVDVGVHQDGLVHVSALADTFVSNPHDVVRSGQVVKV 691
Query: 201 RLIEANAETGRISLTMRESDD 221
+++E + E RISL+M+ SD+
Sbjct: 692 KVMEVDPERKRISLSMKLSDE 712
Score = 43.9 bits (102), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 256 KTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEV 315
K + + G LEGTV N+ GAF+ + ++G + S +D +N ++ GQ V
Sbjct: 632 KISDLIPGMILEGTVTNVAAFGAFVDVGVHQDGLVHVSALADTFVSNPH--DVVRSGQVV 689
Query: 316 SVRVLRIS--RGQVTLTMKKEDDVGSN 340
V+V+ + R +++L+MK D+ G+N
Sbjct: 690 KVKVMEVDPERKRISLSMKLSDEPGAN 716
>gi|77164807|ref|YP_343332.1| RNA binding S1 [Nitrosococcus oceani ATCC 19707]
gi|254434282|ref|ZP_05047790.1| S1 RNA binding domain protein [Nitrosococcus oceani AFC27]
gi|76883121|gb|ABA57802.1| RNA binding S1 [Nitrosococcus oceani ATCC 19707]
gi|207090615|gb|EDZ67886.1| S1 RNA binding domain protein [Nitrosococcus oceani AFC27]
Length = 765
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 60/105 (57%), Gaps = 3/105 (2%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG G ++ FGAF+D G DGLVH+S L+D FVKD IVS G VKV++
Sbjct: 643 EDLKPGMILEGVATNVTAFGAFVDVGVHQDGLVHISALADRFVKDPHEIVSAGDIVKVKV 702
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSK 247
+E + RI LTMR + K Q A+ ++ TRRS +K
Sbjct: 703 LEVDNVRQRIGLTMRLGEMEEK---QSSQLAAKGHMKKTRRSKAK 744
>gi|331270412|ref|YP_004396904.1| RNA binding S1 domain-containing protein [Clostridium botulinum
BKT015925]
gi|329126962|gb|AEB76907.1| RNA binding S1 domain protein [Clostridium botulinum BKT015925]
Length = 722
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 52/74 (70%)
Query: 145 LIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIE 204
L P TG VR++ FGAF+D G DGLVH+S+LSD FVK+ IV VG V+VR++E
Sbjct: 649 LKPDMMLTGTVRNVADFGAFVDIGVHQDGLVHISQLSDKFVKNPLDIVKVGDVVEVRVLE 708
Query: 205 ANAETGRISLTMRE 218
+ + GRISL+M++
Sbjct: 709 VDEKRGRISLSMKK 722
Score = 46.6 bits (109), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 15/104 (14%)
Query: 243 RSTSKPGQK-RDEMKTTKFVKG----------QDLEGTVKNLTRSGAFISLPEGEEGFLP 291
+ KPG+ R+E+ F KG L GTV+N+ GAF+ + ++G +
Sbjct: 621 KEIKKPGRDPREELPKPIFKKGIVDINQLKPDMMLTGTVRNVADFGAFVDIGVHQDGLVH 680
Query: 292 TSEESDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKK 333
S+ SD N + ++VG V VRVL + RG+++L+MKK
Sbjct: 681 ISQLSDKFVKNPL--DIVKVGDVVEVRVLEVDEKRGRISLSMKK 722
>gi|330447155|ref|ZP_08310805.1| transcriptional accessory protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328491346|dbj|GAA05302.1| transcriptional accessory protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 772
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 67/112 (59%), Gaps = 6/112 (5%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DLIPG G + ++ FGAF+D G DGLVH+S LSD FV D +V G VKV++
Sbjct: 646 KDLIPGMVLEGVITNVTNFGAFVDVGVHQDGLVHISALSDKFVSDPREVVKAGDIVKVKV 705
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKV-RTTRRSTSKPGQKRD 253
+E + + RI ++MR SD+ Q+K A D R TR+ S+P ++RD
Sbjct: 706 MEVDLQRKRIGMSMRLSDEPG---QEKPARQPRDNAQRPTRQ--SQPTRQRD 752
>gi|313668440|ref|YP_004048724.1| 30S ribosomal protein S1 [Neisseria lactamica 020-06]
gi|313005902|emb|CBN87358.1| 30S ribosomal protein S1 [Neisseria lactamica 020-06]
Length = 595
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 98/193 (50%), Gaps = 33/193 (17%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E+L GA G V++I +GAF+D G DGL+H++ L+ VK ++ VGQEV+ ++
Sbjct: 222 ENLQEGAIIKGVVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKV 280
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
++ + E R+SL M+ Q + +G TRR + +
Sbjct: 281 LKFDQEKQRVSLGMK---------QLGEDPWNG----LTRR----------------YPQ 311
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G L G V NLT GAF+ + +G EG + S E D N+ +Q+G EV V +L I
Sbjct: 312 GTRLFGKVSNLTDYGAFVEIEQGIEGLVHVS-EMDWTNKNVHPSKVVQLGDEVEVMILEI 370
Query: 323 --SRGQVTLTMKK 333
+R +++L MK+
Sbjct: 371 DENRRRISLGMKQ 383
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 85/197 (43%), Gaps = 46/197 (23%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS-----DNFVKDVGSIVSVGQEVKVRL 202
G +G V+SI FG F+ DGLVH+S LS + V+ G+EV+ +
Sbjct: 399 GDKISGAVKSITDFGIFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKK----GEEVEAVV 454
Query: 203 IEANAETGRISLTMR--ESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKF 260
+ + E RISL ++ E D D
Sbjct: 455 LAIDVEKERISLGIKQLEGDPFGNFISVND------------------------------ 484
Query: 261 VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVL 320
KG ++GTVK++ GA ++L + EG+LP SE + D ++ + L+ G EV VL
Sbjct: 485 -KGSLVKGTVKSVDAKGAVVALSDEVEGYLPASEFAADRVEDL--STKLKEGDEVEAVVL 541
Query: 321 RISRGQ--VTLTMKKED 335
+ R + L++K +D
Sbjct: 542 TVDRKNRSIKLSVKAKD 558
>gi|383780632|ref|YP_005465198.1| putative transcription accessory protein [Actinoplanes
missouriensis 431]
gi|381373864|dbj|BAL90682.1| putative transcription accessory protein [Actinoplanes
missouriensis 431]
Length = 809
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 53/84 (63%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G+V ++ FGAF+D G DGLVHVS LSD FV+D +V G VKV
Sbjct: 641 KIADLSPGMILEGQVTNVAAFGAFVDIGVHQDGLVHVSALSDKFVQDPREVVKSGDVVKV 700
Query: 201 RLIEANAETGRISLTMRESDDISK 224
R++E + RISL+MR DD +K
Sbjct: 701 RVLEVDPVRKRISLSMRLQDDPAK 724
>gi|282899504|ref|ZP_06307469.1| RNA binding S1 [Cylindrospermopsis raciborskii CS-505]
gi|281195611|gb|EFA70543.1| RNA binding S1 [Cylindrospermopsis raciborskii CS-505]
Length = 718
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 52/75 (69%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL G G + ++ FGAF+D G DGLVH+S+L+D FV+D +IV VGQ V+VR++
Sbjct: 642 DLTVGMELEGIITNVANFGAFVDIGVHQDGLVHISQLADRFVEDPKTIVKVGQLVRVRVL 701
Query: 204 EANAETGRISLTMRE 218
E N + RISL+MR+
Sbjct: 702 EVNEKLKRISLSMRK 716
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 15/109 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKG----------QDLEGTVKNLTRSGAFISLPEGE 286
+R R KPG+ R E K F +G +LEG + N+ GAF+ + +
Sbjct: 610 LRDILRELEKPGRDPRAEFKYATFREGIKEIRDLTVGMELEGIITNVANFGAFVDIGVHQ 669
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISR--GQVTLTMKK 333
+G + S+ +D + + ++VGQ V VRVL ++ +++L+M+K
Sbjct: 670 DGLVHISQLADRFVED--PKTIVKVGQLVRVRVLEVNEKLKRISLSMRK 716
>gi|94310177|ref|YP_583387.1| putative RNA-binding transcription accessory protein [Cupriavidus
metallidurans CH34]
gi|93354029|gb|ABF08118.1| Putative RNA-binding transcription accessory protein [Cupriavidus
metallidurans CH34]
Length = 787
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 60/109 (55%), Gaps = 9/109 (8%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S LS FVKD +V GQ VKV++
Sbjct: 658 KDLQPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHISALSTKFVKDAHEVVKAGQIVKVKV 717
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQK 251
+E + + RI LTMR D+ Q A A G RS + GQ+
Sbjct: 718 MEVDVKRNRIGLTMRLDDEPG----QATARAGG-----ADRSNDRGGQR 757
Score = 39.7 bits (91), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 226 QQQKDATASGDKVRTTRRSTSKPGQK-RDEMKTTKF------VK----GQDLEGTVKNLT 274
QQ D T VR KPG+ R E KT F VK G LEG V N+
Sbjct: 615 QQFADDTFGLPTVRDILSELEKPGRDPRPEFKTATFQDGVEDVKDLQPGMVLEGVVTNVA 674
Query: 275 RSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMK 332
GAF+ + ++G + S S + ++ GQ V V+V+ + R ++ LTM+
Sbjct: 675 AFGAFVDIGVHQDGLVHISALSTKFVKD--AHEVVKAGQIVKVKVMEVDVKRNRIGLTMR 732
Query: 333 KEDDVG 338
+D+ G
Sbjct: 733 LDDEPG 738
>gi|283778165|ref|YP_003368920.1| RNA binding S1 domain-containing protein [Pirellula staleyi DSM
6068]
gi|283436618|gb|ADB15060.1| RNA binding S1 domain protein [Pirellula staleyi DSM 6068]
Length = 502
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 104/208 (50%), Gaps = 39/208 (18%)
Query: 127 RRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVK 186
R +A+K M + D+ G VR IQ FGAF+D G DGL+H+S++S + +K
Sbjct: 278 REKESAKKELMASIAIGDMREGV-----VRKIQDFGAFVDMGGI-DGLIHISQMSWDRIK 331
Query: 187 DVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTS 246
I++ GQ+V+VR+ + + ETG+I L++R QQ+ D+
Sbjct: 332 HPSEILTEGQKVRVRIEKIDPETGKIGLSLR--------NQQEHPWTGIDQ--------- 374
Query: 247 KPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGG 306
KF G ++GTV L GAF+ L G EG + SE + + +
Sbjct: 375 ------------KFPVGSIVKGTVSRLAAFGAFVKLSPGVEGLIHISELAHNRVYAVQ-- 420
Query: 307 SSLQVGQEVSVRVLRISR--GQVTLTMK 332
+ ++ GQEV V++L +S +++L++K
Sbjct: 421 NVVKEGQEVEVKILTVSAEDQRISLSLK 448
>gi|430807834|ref|ZP_19434949.1| putative RNA-binding transcription accessory protein [Cupriavidus
sp. HMR-1]
gi|429499866|gb|EKZ98265.1| putative RNA-binding transcription accessory protein [Cupriavidus
sp. HMR-1]
Length = 787
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 50/79 (63%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S LS FVKD +V GQ VKV++
Sbjct: 658 KDLQPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHISALSTKFVKDAHEVVKAGQIVKVKV 717
Query: 203 IEANAETGRISLTMRESDD 221
+E + + RI LTMR D+
Sbjct: 718 MEVDVKRNRIGLTMRLDDE 736
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 226 QQQKDATASGDKVRTTRRSTSKPGQK-RDEMKTTKF------VK----GQDLEGTVKNLT 274
QQ D T VR KPG+ R E KT F VK G LEG V N+
Sbjct: 615 QQFADDTFGLPTVRDILSELEKPGRDPRPEFKTATFQDGVEDVKDLQPGMVLEGVVTNVA 674
Query: 275 RSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMK 332
GAF+ + ++G + S S + ++ GQ V V+V+ + R ++ LTM+
Sbjct: 675 AFGAFVDIGVHQDGLVHISALSTKFVKD--AHEVVKAGQIVKVKVMEVDVKRNRIGLTMR 732
Query: 333 KEDDVG 338
+D+ G
Sbjct: 733 LDDEPG 738
>gi|304387393|ref|ZP_07369585.1| 30S ribosomal protein S1 [Neisseria meningitidis ATCC 13091]
gi|304338644|gb|EFM04762.1| 30S ribosomal protein S1 [Neisseria meningitidis ATCC 13091]
Length = 589
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 97/193 (50%), Gaps = 33/193 (17%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E+L G+ G V++I +GAF+D G DGL+H++ L+ VK ++ VGQEV+ ++
Sbjct: 216 ENLQEGSVIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKV 274
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
++ + E R+SL M+ Q + SG TRR + +
Sbjct: 275 LKFDQEKQRVSLGMK---------QLGEDPWSG----LTRR----------------YPQ 305
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G L G V NLT GAF+ + +G EG + S E D N+ +Q+G EV V +L I
Sbjct: 306 GTRLFGKVSNLTDYGAFVEIEQGIEGLVHVS-EMDWTNKNVHPSKVVQLGDEVEVMILEI 364
Query: 323 SRG--QVTLTMKK 333
G +++L MK+
Sbjct: 365 DEGRRRISLGMKQ 377
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 46/197 (23%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS-----DNFVKDVGSIVSVGQEVKVRL 202
G +G V+SI FG F+ DGLVH+S LS + V+ G+EV+ +
Sbjct: 393 GDKISGAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKK----GEEVEAVV 448
Query: 203 IEANAETGRISLTMR--ESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKF 260
+ + E RISL ++ E D D
Sbjct: 449 LAIDVEKERISLGIKQLEGDPFGNFISVND------------------------------ 478
Query: 261 VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVL 320
KG ++G+VK++ GA I+L + EG+LP SE + D ++ + L+ G EV ++
Sbjct: 479 -KGSLVKGSVKSVDAKGAVIALSDEVEGYLPASEFAADRVEDLT--TKLKEGDEVEAVIV 535
Query: 321 RISRGQ--VTLTMKKED 335
+ R + L++K +D
Sbjct: 536 TVDRKNRSIKLSVKAKD 552
>gi|416177928|ref|ZP_11610297.1| ribosomal protein S1 [Neisseria meningitidis M6190]
gi|416196380|ref|ZP_11618150.1| ribosomal protein S1 [Neisseria meningitidis CU385]
gi|427827973|ref|ZP_18994992.1| ribosomal protein S1 [Neisseria meningitidis H44/76]
gi|254673142|emb|CBA07943.1| 30S ribosomal protein S1 [Neisseria meningitidis alpha275]
gi|316984099|gb|EFV63077.1| ribosomal protein S1 [Neisseria meningitidis H44/76]
gi|325132498|gb|EGC55191.1| ribosomal protein S1 [Neisseria meningitidis M6190]
gi|325140474|gb|EGC62995.1| ribosomal protein S1 [Neisseria meningitidis CU385]
Length = 589
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 97/193 (50%), Gaps = 33/193 (17%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E+L G+ G V++I +GAF+D G DGL+H++ L+ VK ++ VGQEV+ ++
Sbjct: 216 ENLQEGSVIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKV 274
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
++ + E R+SL M+ Q + SG TRR + +
Sbjct: 275 LKFDQEKQRVSLGMK---------QLGEDPWSG----LTRR----------------YPQ 305
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G L G V NLT GAF+ + +G EG + S E D N+ +Q+G EV V +L I
Sbjct: 306 GTRLFGKVSNLTDYGAFVEIEQGIEGLVHVS-EMDWTNKNVHPSKVVQLGDEVEVMILEI 364
Query: 323 SRG--QVTLTMKK 333
G +++L MK+
Sbjct: 365 DEGRRRISLGMKQ 377
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 46/197 (23%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS-----DNFVKDVGSIVSVGQEVKVRL 202
G +G V+SI FG F+ DGLVH+S LS + V+ G+EV+ +
Sbjct: 393 GDKISGAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKK----GEEVEAVV 448
Query: 203 IEANAETGRISLTMR--ESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKF 260
+ + E RISL ++ E D D
Sbjct: 449 LAIDVEKERISLGIKQLEGDPFGNFISVND------------------------------ 478
Query: 261 VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVL 320
KG ++G+VK++ GA I+L + EG+LP SE + D ++ + L+ G EV ++
Sbjct: 479 -KGSLVKGSVKSVDAKGAVIALSDEVEGYLPASEFAADRVEDLT--TKLKEGDEVEAVIV 535
Query: 321 RISRGQ--VTLTMKKED 335
+ R + L++K +D
Sbjct: 536 TVDRKNRSIKLSVKAKD 552
>gi|392934502|gb|AFM92599.1| S1 RNA-binding domain-containing protein [Acaryochloris sp.
HICR111A]
Length = 724
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 50/77 (64%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL P G V ++ FGAF+D G DGLVH+S+++D FVKD IV VGQ VKV
Sbjct: 638 KLTDLKPDMELEGIVTNVTNFGAFVDVGVHQDGLVHISQMADQFVKDPKQIVKVGQVVKV 697
Query: 201 RLIEANAETGRISLTMR 217
R++E N + RI L+MR
Sbjct: 698 RVLEVNQQLKRIGLSMR 714
>gi|344174599|emb|CCA86400.1| transcriptional accessory protein [Ralstonia syzygii R24]
Length = 779
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 63/108 (58%), Gaps = 2/108 (1%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAFID G DGLVHVS LS FV+D +V GQ VKV++
Sbjct: 659 KDLQPGMVLEGVVTNVAAFGAFIDIGVHQDGLVHVSALSTKFVRDPHEVVKPGQVVKVKV 718
Query: 203 IEANAETGRISLTMRESDDISKLQQQK--DATASGDKVRTTRRSTSKP 248
+E + + RI LTMR +D+ ++ + D A G++ +R +P
Sbjct: 719 MEVDVKRNRIGLTMRLADEPGQMPARSGGDRPAGGNRNGGQQRRAPEP 766
>gi|83649058|ref|YP_437493.1| transcriptional accessory protein [Hahella chejuensis KCTC 2396]
gi|83637101|gb|ABC33068.1| Transcriptional accessory protein [Hahella chejuensis KCTC 2396]
Length = 775
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 51/80 (63%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S LS FVKD +V G VKV++
Sbjct: 646 KDLKPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISALSHKFVKDPREVVKAGDIVKVKV 705
Query: 203 IEANAETGRISLTMRESDDI 222
IE +A RI+LTMR D++
Sbjct: 706 IEVDAARKRIALTMRLDDEV 725
>gi|428308429|ref|YP_007119406.1| transcriptional accessory protein [Microcoleus sp. PCC 7113]
gi|428250041|gb|AFZ16000.1| transcriptional accessory protein [Microcoleus sp. PCC 7113]
Length = 751
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 52/80 (65%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL G G V ++ FGAF+D G DGLVH+S+L+D FVKD IV VGQ VKVR++
Sbjct: 642 DLQIGMELEGSVTNVANFGAFVDIGVHQDGLVHISQLADRFVKDPKEIVKVGQVVKVRVL 701
Query: 204 EANAETGRISLTMRESDDIS 223
E + + RISL+M+ D S
Sbjct: 702 EVDEKLKRISLSMKSPDKAS 721
Score = 38.9 bits (89), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 15/102 (14%)
Query: 247 KPGQK-RDEMKTTKFVKG----------QDLEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E K F +G +LEG+V N+ GAF+ + ++G + S+
Sbjct: 619 KPGRDPRAEFKYATFKEGIKEISDLQIGMELEGSVTNVANFGAFVDIGVHQDGLVHISQL 678
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRISR--GQVTLTMKKED 335
+D + ++VGQ V VRVL + +++L+MK D
Sbjct: 679 ADRFVKD--PKEIVKVGQVVKVRVLEVDEKLKRISLSMKSPD 718
>gi|281423107|ref|ZP_06254020.1| protein YhgF [Prevotella oris F0302]
gi|281402443|gb|EFB33274.1| protein YhgF [Prevotella oris F0302]
Length = 707
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 50/75 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDLI G G V +I FGAF+D G DGLVH+S+++D F+KD +V + Q V+VR+
Sbjct: 629 EDLIVGMELPGIVTNITNFGAFVDIGVHQDGLVHISQMADKFIKDPNEVVKLHQHVRVRV 688
Query: 203 IEANAETGRISLTMR 217
IE + RI+L+MR
Sbjct: 689 IEVDLRRKRIALSMR 703
>gi|126731729|ref|ZP_01747534.1| S1 RNA binding domain protein [Sagittula stellata E-37]
gi|126707895|gb|EBA06956.1| S1 RNA binding domain protein [Sagittula stellata E-37]
Length = 788
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 54/92 (58%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVHVS+L+D FVKD +V G VKVR+
Sbjct: 643 KDLKPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKVRV 702
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATAS 234
E + RI LTMR+ Q ++D A+
Sbjct: 703 TEVDIPRKRIGLTMRKDGGGRDAQPRRDGAAT 734
>gi|384263332|ref|YP_005418520.1| RNA binding protein [Rhodospirillum photometricum DSM 122]
gi|378404434|emb|CCG09550.1| RNA binding protein, putative [Rhodospirillum photometricum DSM
122]
Length = 856
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 68/131 (51%), Gaps = 9/131 (6%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG G V ++ FGAF+D G DGLVHVS LS+ FVKD +V G VKV++
Sbjct: 646 EDLRPGMILEGVVSNVAAFGAFVDIGVHQDGLVHVSALSERFVKDPREVVKPGDIVKVKV 705
Query: 203 IEANAETGRISLTMRESD----DISKLQQQ-----KDATASGDKVRTTRRSTSKPGQKRD 253
+E + R+ L+MR SD D SK+ + K+A G R R P + R
Sbjct: 706 MEVDLPRKRVGLSMRLSDEPGQDRSKMARDTAPVAKNAAKRGASRRHPVRGMRWPRRLRG 765
Query: 254 EMKTTKFVKGQ 264
KT K G+
Sbjct: 766 RGKTNKGKAGE 776
>gi|329118647|ref|ZP_08247351.1| YhgF like protein [Neisseria bacilliformis ATCC BAA-1200]
gi|327465382|gb|EGF11663.1| YhgF like protein [Neisseria bacilliformis ATCC BAA-1200]
Length = 789
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 49/74 (66%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G G V ++ FGAF+D G DGLVH+S LSD FV+D IV G VKV+++E +A
Sbjct: 667 GMILEGVVSNVANFGAFVDIGVHQDGLVHISALSDRFVQDPREIVKAGDVVKVKVLEVDA 726
Query: 208 ETGRISLTMRESDD 221
E RI+LTMR SDD
Sbjct: 727 ERKRIALTMRLSDD 740
>gi|381157062|ref|ZP_09866296.1| transcriptional accessory protein [Thiorhodovibrio sp. 970]
gi|380880925|gb|EIC23015.1| transcriptional accessory protein [Thiorhodovibrio sp. 970]
Length = 784
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 67/113 (59%), Gaps = 7/113 (6%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L+D F++D +V GQ VKV+++
Sbjct: 644 DLKPGMVLEGTVTNVTNFGAFVDIGVHQDGLVHISMLADRFIRDPHEVVHSGQLVKVQVL 703
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMK 256
E + E RI+L+MR+ + + L + A+G K + R S+P + D+ K
Sbjct: 704 EIDLERKRIALSMRQDNSDAGLNR----GAAGAKADSGR---SRPDSRNDQRK 749
Score = 40.0 bits (92), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 16/117 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E + F++G + LEGTV N+T GAF+ + +
Sbjct: 612 VRDILVELEKPGRDPRPEFRAASFMEGVETLADLKPGMVLEGTVTNVTNFGAFVDIGVHQ 671
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKKED-DVGSN 340
+G + S +D + + GQ V V+VL I R ++ L+M++++ D G N
Sbjct: 672 DGLVHISMLADRFIRDPH--EVVHSGQLVKVQVLEIDLERKRIALSMRQDNSDAGLN 726
>gi|194289459|ref|YP_002005366.1| transcriptional accessory protein [Cupriavidus taiwanensis LMG
19424]
gi|193223294|emb|CAQ69299.1| transcriptional accessory protein [Cupriavidus taiwanensis LMG
19424]
Length = 781
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 51/79 (64%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S LS+ FVKD +V GQ VKV++
Sbjct: 658 KDLQPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHISALSNKFVKDAHEVVKAGQIVKVKV 717
Query: 203 IEANAETGRISLTMRESDD 221
+E + + RI L+MR D+
Sbjct: 718 MEVDVKRNRIGLSMRLDDE 736
>gi|402813514|ref|ZP_10863109.1| transcriptional accessory protein [Paenibacillus alvei DSM 29]
gi|402509457|gb|EJW19977.1| transcriptional accessory protein [Paenibacillus alvei DSM 29]
Length = 742
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 58/97 (59%), Gaps = 6/97 (6%)
Query: 127 RRSRTARKSEMPPV------KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRL 180
R R R+ PP+ + EDL PG G VR++ FGAF+D G DGLVH+S+L
Sbjct: 642 RPGRDPREELAPPIFRTDVLQIEDLKPGMELKGTVRNVIDFGAFVDIGIKNDGLVHISQL 701
Query: 181 SDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMR 217
SD +VK +VSVG V V +++ + + GR+ LTM+
Sbjct: 702 SDRYVKHPLDVVSVGDNVTVWVLQVDTKKGRVGLTMK 738
Score = 43.9 bits (102), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R + P + D ++ G +L+GTV+N+ GAF+ + +G + S+ SD
Sbjct: 645 RDPREELAPPIFRTDVLQIEDLKPGMELKGTVRNVIDFGAFVDIGIKNDGLVHISQLSDR 704
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMK 332
+ + S VG V+V VL++ +G+V LTMK
Sbjct: 705 YVKHPLDVVS--VGDNVTVWVLQVDTKKGRVGLTMK 738
>gi|392953479|ref|ZP_10319033.1| tex protein [Hydrocarboniphaga effusa AP103]
gi|391858994|gb|EIT69523.1| tex protein [Hydrocarboniphaga effusa AP103]
Length = 776
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 69/115 (60%), Gaps = 4/115 (3%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVHVS+L+D FVK+ +V G VKVR+
Sbjct: 650 KDLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADKFVKNPHEVVKAGDIVKVRV 709
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQ-KRDEMK 256
++ + + RI+L+MR+ D + + + + A GD + R PG+ K+ E+K
Sbjct: 710 VDVDLKRQRIALSMRKDDGSASMPR---SAAGGDAPSSRDRRGPPPGKGKQQEVK 761
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 15/111 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E +T F G + LEGTV N+ GAF+ + +
Sbjct: 619 VRDILSELEKPGRDPRPEFRTASFADGINEVKDLKPGMVLEGTVTNVAAFGAFVDIGVHQ 678
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKED 335
+G + S+ +D N ++ G V VRV+ + R ++ L+M+K+D
Sbjct: 679 DGLVHVSQLADKFVKN--PHEVVKAGDIVKVRVVDVDLKRQRIALSMRKDD 727
>gi|299066633|emb|CBJ37826.1| transcriptional accessory protein [Ralstonia solanacearum CMR15]
Length = 802
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAFID G DGLVHVS LS FV+D +V GQ VKV++
Sbjct: 682 KDLQPGMVLEGVVTNVAAFGAFIDIGVHQDGLVHVSALSTKFVRDPHEVVKPGQIVKVKV 741
Query: 203 IEANAETGRISLTMRESDDISKLQQQ--KDATASGDKVRTTRRSTSKP 248
+E + + RI LTMR +D+ ++ + D A+G++ +R +P
Sbjct: 742 MEVDVKRNRIGLTMRLTDEPGQVPARSGSDRPAAGNRNGGQQRRAPEP 789
>gi|421749897|ref|ZP_16187244.1| RNA binding S1, partial [Cupriavidus necator HPC(L)]
gi|409771153|gb|EKN53548.1| RNA binding S1, partial [Cupriavidus necator HPC(L)]
Length = 753
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 51/79 (64%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S LS+ FVKD +V GQ VKV++
Sbjct: 658 KDLQPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHISALSNKFVKDAHEVVKAGQIVKVKV 717
Query: 203 IEANAETGRISLTMRESDD 221
+E + + RI L+MR D+
Sbjct: 718 MEVDVKRNRIGLSMRLDDE 736
>gi|254670492|emb|CBA06216.1| 30S ribosomal protein S1 [Neisseria meningitidis alpha153]
Length = 589
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 98/193 (50%), Gaps = 33/193 (17%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E+L G+ G V++I +GAF+D G DGL+H++ L+ VK ++ VGQEV+ ++
Sbjct: 216 ENLQEGSVIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKV 274
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
++ + + R+SL M+ Q + SG TRR + +
Sbjct: 275 LKFDQDKQRVSLGMK---------QLGEDPWSG----LTRR----------------YPQ 305
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G L G V NLT GAF+ + +G EG + S E D N+ +Q+G EV V +L I
Sbjct: 306 GTRLFGKVSNLTDYGAFVEIEQGIEGLVHVS-EMDWTNKNVHPSKVVQLGDEVEVMILEI 364
Query: 323 --SRGQVTLTMKK 333
SR +++L MK+
Sbjct: 365 DESRRRISLGMKQ 377
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 46/197 (23%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS-----DNFVKDVGSIVSVGQEVKVRL 202
G +G V+SI FG F+ DGLVH+S LS + V+ G+EV+ +
Sbjct: 393 GDKISGAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKK----GEEVEAVV 448
Query: 203 IEANAETGRISLTMR--ESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKF 260
+ + E RISL ++ E D D
Sbjct: 449 LAIDVEKERISLGIKQLEGDPFGNFISVND------------------------------ 478
Query: 261 VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVL 320
KG ++GTVK++ GA ++L + EG+LP SE + D ++ + L+ G EV ++
Sbjct: 479 -KGSLVKGTVKSVDAKGAVVALSDEVEGYLPASEFAADRVEDLT--TKLKEGDEVEAVIV 535
Query: 321 RISRGQ--VTLTMKKED 335
+ R + L++K +D
Sbjct: 536 TVDRKNRSIKLSVKAKD 552
>gi|421907037|ref|ZP_16336925.1| 30S ribosomal protein S1 [Neisseria meningitidis alpha704]
gi|393292001|emb|CCI72894.1| 30S ribosomal protein S1 [Neisseria meningitidis alpha704]
Length = 589
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 98/193 (50%), Gaps = 33/193 (17%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E+L G+ G V++I +GAF+D G DGL+H++ L+ VK ++ VGQEV+ ++
Sbjct: 216 ENLQEGSVIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKV 274
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
++ + + R+SL M+ Q + SG TRR + +
Sbjct: 275 LKFDQDKQRVSLGMK---------QLGEDPWSG----LTRR----------------YPQ 305
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G L G V NLT GAF+ + +G EG + S E D N+ +Q+G EV V +L I
Sbjct: 306 GTRLFGKVSNLTDYGAFVEIEQGIEGLVHVS-EMDWTNKNVHPSKVVQLGDEVEVMILEI 364
Query: 323 --SRGQVTLTMKK 333
SR +++L MK+
Sbjct: 365 DESRRRISLGMKQ 377
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 46/197 (23%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS-----DNFVKDVGSIVSVGQEVKVRL 202
G +G V+SI FG F+ DGLVH+S LS + V+ G+EV+ +
Sbjct: 393 GDKISGAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKK----GEEVEAVV 448
Query: 203 IEANAETGRISLTMR--ESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKF 260
+ + E RISL ++ E D D
Sbjct: 449 LAIDVEKERISLGIKQLEGDPFGNFISVND------------------------------ 478
Query: 261 VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVL 320
KG ++G+VK++ GA I+L + EG+LP SE + D ++ + L+ G EV ++
Sbjct: 479 -KGSLVKGSVKSVDAKGAVIALSDEVEGYLPASEFAADRVEDLT--TKLKEGDEVEAVIV 535
Query: 321 RISRGQ--VTLTMKKED 335
+ R + L++K +D
Sbjct: 536 TVDRKNRSIKLSVKAKD 552
>gi|299140633|ref|ZP_07033771.1| S1 RNA binding domain protein [Prevotella oris C735]
gi|298577599|gb|EFI49467.1| S1 RNA binding domain protein [Prevotella oris C735]
Length = 707
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 50/75 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDLI G G V +I FGAF+D G DGLVH+S+++D F+KD +V + Q V+VR+
Sbjct: 629 EDLIVGMELPGIVTNITNFGAFVDIGVHQDGLVHISQMADKFIKDPNEVVKLHQHVRVRV 688
Query: 203 IEANAETGRISLTMR 217
IE + RI+L+MR
Sbjct: 689 IEVDLRRKRIALSMR 703
>gi|187929004|ref|YP_001899491.1| RNA binding S1 domain-containing protein [Ralstonia pickettii 12J]
gi|187725894|gb|ACD27059.1| RNA binding S1 domain protein [Ralstonia pickettii 12J]
Length = 777
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 51/79 (64%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAFID G DGLVHVS LS FV+D +V GQ VKV++
Sbjct: 655 KDLQPGMVLEGVVTNVAAFGAFIDIGVHQDGLVHVSALSTKFVRDPHEVVKPGQIVKVKV 714
Query: 203 IEANAETGRISLTMRESDD 221
+E + + RI LTMR SD+
Sbjct: 715 MEVDVKRNRIGLTMRLSDE 733
>gi|416187686|ref|ZP_11614298.1| ribosomal protein S1 [Neisseria meningitidis M0579]
gi|325136195|gb|EGC58803.1| ribosomal protein S1 [Neisseria meningitidis M0579]
Length = 561
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 97/193 (50%), Gaps = 33/193 (17%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E+L G+ G V++I +GAF+D G DGL+H++ L+ VK ++ VGQEV+ ++
Sbjct: 188 ENLQEGSVIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKV 246
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
++ + E R+SL M+ Q + SG TRR + +
Sbjct: 247 LKFDQEKQRVSLGMK---------QLGEDPWSG----LTRR----------------YPQ 277
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G L G V NLT GAF+ + +G EG + S E D N+ +Q+G EV V +L I
Sbjct: 278 GTRLFGKVSNLTDYGAFVEIEQGIEGLVHVS-EMDWTNKNVHPSKVVQLGDEVEVMILEI 336
Query: 323 SRG--QVTLTMKK 333
G +++L MK+
Sbjct: 337 DEGRRRISLGMKQ 349
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 46/197 (23%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRL-----SDNFVKDVGSIVSVGQEVKVRL 202
G +G V+SI FG F+ DGLVH+S L S+ V+ G+EV+ +
Sbjct: 365 GDKISGAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESSEEAVRKYKK----GEEVEAVV 420
Query: 203 IEANAETGRISLTMR--ESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKF 260
+ + E RISL ++ E D D
Sbjct: 421 LAIDVEKERISLGIKQLEGDPFGNFISVND------------------------------ 450
Query: 261 VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVL 320
KG ++G+VK++ GA I+L + EG+LP SE + D ++ + L+ G EV ++
Sbjct: 451 -KGSLVKGSVKSVDAKGAVIALSDEVEGYLPASEFAADRVEDLT--TKLKEGDEVEAVIV 507
Query: 321 RISRGQ--VTLTMKKED 335
+ R + L++K +D
Sbjct: 508 TVDRKNRSIKLSVKAKD 524
>gi|421859093|ref|ZP_16291336.1| transcriptional accessory protein [Paenibacillus popilliae ATCC
14706]
gi|410831340|dbj|GAC41773.1| transcriptional accessory protein [Paenibacillus popilliae ATCC
14706]
Length = 744
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 57/93 (61%), Gaps = 7/93 (7%)
Query: 134 KSEMPPV-------KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVK 186
+ E+PPV + EDL PG G VR++ FGAF+D G DGLVH+S+LS+ +VK
Sbjct: 646 REELPPVVFRTDVLQIEDLKPGMELKGTVRNVIDFGAFVDIGIKNDGLVHISQLSERYVK 705
Query: 187 DVGSIVSVGQEVKVRLIEANAETGRISLTMRES 219
+VSVG V V ++ + + GR+ LTM+ S
Sbjct: 706 HPLDVVSVGDNVTVWVLSVDVKKGRVGLTMKRS 738
>gi|385340209|ref|YP_005894081.1| 30S ribosomal protein S1 [Neisseria meningitidis G2136]
gi|385341782|ref|YP_005895653.1| 30S ribosomal protein S1 [Neisseria meningitidis M01-240149]
gi|385853069|ref|YP_005899583.1| 30S ribosomal protein S1 [Neisseria meningitidis H44/76]
gi|416191956|ref|ZP_11616337.1| ribosomal protein S1 [Neisseria meningitidis ES14902]
gi|325138272|gb|EGC60841.1| ribosomal protein S1 [Neisseria meningitidis ES14902]
gi|325198453|gb|ADY93909.1| ribosomal protein S1 [Neisseria meningitidis G2136]
gi|325200073|gb|ADY95528.1| ribosomal protein S1 [Neisseria meningitidis H44/76]
gi|325201988|gb|ADY97442.1| ribosomal protein S1 [Neisseria meningitidis M01-240149]
Length = 559
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 97/193 (50%), Gaps = 33/193 (17%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E+L G+ G V++I +GAF+D G DGL+H++ L+ VK ++ VGQEV+ ++
Sbjct: 186 ENLQEGSVIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKV 244
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
++ + E R+SL M+ Q + SG TRR + +
Sbjct: 245 LKFDQEKQRVSLGMK---------QLGEDPWSG----LTRR----------------YPQ 275
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G L G V NLT GAF+ + +G EG + S E D N+ +Q+G EV V +L I
Sbjct: 276 GTRLFGKVSNLTDYGAFVEIEQGIEGLVHVS-EMDWTNKNVHPSKVVQLGDEVEVMILEI 334
Query: 323 SRG--QVTLTMKK 333
G +++L MK+
Sbjct: 335 DEGRRRISLGMKQ 347
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 46/197 (23%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS-----DNFVKDVGSIVSVGQEVKVRL 202
G +G V+SI FG F+ DGLVH+S LS + V+ G+EV+ +
Sbjct: 363 GDKISGAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKK----GEEVEAVV 418
Query: 203 IEANAETGRISLTMR--ESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKF 260
+ + E RISL ++ E D D
Sbjct: 419 LAIDVEKERISLGIKQLEGDPFGNFISVND------------------------------ 448
Query: 261 VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVL 320
KG ++G+VK++ GA I+L + EG+LP SE + D ++ + L+ G EV ++
Sbjct: 449 -KGSLVKGSVKSVDAKGAVIALSDEVEGYLPASEFAADRVEDLT--TKLKEGDEVEAVIV 505
Query: 321 RISRGQ--VTLTMKKED 335
+ R + L++K +D
Sbjct: 506 TVDRKNRSIKLSVKAKD 522
>gi|121635013|ref|YP_975258.1| 30S ribosomal protein S1 [Neisseria meningitidis FAM18]
gi|120866719|emb|CAM10472.1| 30S ribosomal protein S1 [Neisseria meningitidis FAM18]
Length = 570
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 97/193 (50%), Gaps = 33/193 (17%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E+L G+ G V++I +GAF+D G DGL+H++ L+ VK ++ VGQEV+ ++
Sbjct: 197 ENLQEGSVIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKV 255
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
++ + E R+SL M+ Q + SG TRR + +
Sbjct: 256 LKFDQEKQRVSLGMK---------QLGEDPWSG----LTRR----------------YPQ 286
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G L G V NLT GAF+ + +G EG + S E D N+ +Q+G EV V +L I
Sbjct: 287 GTRLFGKVSNLTDYGAFVEIEQGIEGLVHVS-EMDWTNKNVHPSKVVQLGDEVEVMILEI 345
Query: 323 SRG--QVTLTMKK 333
G +++L MK+
Sbjct: 346 DEGRRRISLGMKQ 358
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 46/197 (23%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS-----DNFVKDVGSIVSVGQEVKVRL 202
G +G V+SI FG F+ DGLVH+S LS + V+ G+EV+ +
Sbjct: 374 GDKISGAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKK----GEEVEAVV 429
Query: 203 IEANAETGRISLTMR--ESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKF 260
+ + E RISL ++ E D D
Sbjct: 430 LAIDVEKERISLGIKQLEGDPFGNFISVND------------------------------ 459
Query: 261 VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVL 320
KG ++G+VK++ GA I+L + EG+LP SE + D ++ + L+ G EV ++
Sbjct: 460 -KGSLVKGSVKSVDAKGAVIALSDEVEGYLPASEFAADRVEDLT--TKLKEGDEVEAVIV 516
Query: 321 RISRGQ--VTLTMKKED 335
+ R + L++K +D
Sbjct: 517 TVDRKNRSIKLSVKAKD 533
>gi|301059712|ref|ZP_07200612.1| Tex-like protein N-terminal domain protein [delta proteobacterium
NaphS2]
gi|300446189|gb|EFK10054.1| Tex-like protein N-terminal domain protein [delta proteobacterium
NaphS2]
Length = 745
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 53/77 (68%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K EDL PG T G V +I FGAF+D G DGLVHVS+++D+FVKD ++ V Q+V V
Sbjct: 632 KIEDLEPGMTLPGVVTNIVAFGAFVDIGVHQDGLVHVSQMADHFVKDPNEVIKVYQKVSV 691
Query: 201 RLIEANAETGRISLTMR 217
R++ + E RISL+++
Sbjct: 692 RVLGVDLERKRISLSLK 708
>gi|296314512|ref|ZP_06864453.1| ribosomal protein S1 [Neisseria polysaccharea ATCC 43768]
gi|296838822|gb|EFH22760.1| ribosomal protein S1 [Neisseria polysaccharea ATCC 43768]
Length = 561
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 97/193 (50%), Gaps = 33/193 (17%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E+L G+ G V++I +GAF+D G DGL+H++ L+ VK ++ VGQEV+ ++
Sbjct: 188 ENLQEGSVIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKV 246
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
++ + E R+SL M+ Q + SG TRR + +
Sbjct: 247 LKFDQEKQRVSLGMK---------QLGEDPWSG----LTRR----------------YPQ 277
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G L G V NLT GAF+ + +G EG + S E D N+ +Q+G EV V +L I
Sbjct: 278 GTRLFGKVSNLTDYGAFVGIEQGIEGLVHVS-EMDWTNKNVHPSKVVQLGDEVEVMILEI 336
Query: 323 SRG--QVTLTMKK 333
G +++L MK+
Sbjct: 337 DEGRRRISLGMKQ 349
Score = 48.5 bits (114), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 85/197 (43%), Gaps = 46/197 (23%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS-----DNFVKDVGSIVSVGQEVKVRL 202
G +G V+SI FG F+ DGLVH+S LS + V+ G+EV+ +
Sbjct: 365 GDKISGAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKK----GEEVEAVV 420
Query: 203 IEANAETGRISLTMR--ESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKF 260
+ + E RISL ++ E D D
Sbjct: 421 LAIDVEKERISLGIKQLEGDPFGNFISVND------------------------------ 450
Query: 261 VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVL 320
KG ++G+VK++ GA ++L + EG+LP SE + D ++ + L+ G EV ++
Sbjct: 451 -KGSLVKGSVKSVDAKGAVVALSDEVEGYLPASEFAADRVEDLT--TKLKEGDEVEAVIV 507
Query: 321 RISRGQ--VTLTMKKED 335
+ R + L++K +D
Sbjct: 508 TVDRKNRSIKLSVKAKD 524
>gi|334137448|ref|ZP_08510883.1| Tex-like protein N-terminal domain protein [Paenibacillus sp. HGF7]
gi|333605029|gb|EGL16408.1| Tex-like protein N-terminal domain protein [Paenibacillus sp. HGF7]
Length = 743
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG G VR++ FGAF+D G +DGLVH+S+LSD FVK +VSVG V V +
Sbjct: 666 EDLKPGMELQGTVRNVIDFGAFVDIGIKSDGLVHISQLSDKFVKHPMDVVSVGDNVTVWV 725
Query: 203 IEANAETGRISLTMRE 218
+ + + GR+ LTM++
Sbjct: 726 LNVDVKKGRVGLTMKQ 741
Score = 43.9 bits (102), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R P + D ++ G +L+GTV+N+ GAF+ + +G + S+ SD
Sbjct: 647 RDPREELGTPIFRTDVLQIEDLKPGMELQGTVRNVIDFGAFVDIGIKSDGLVHISQLSDK 706
Query: 299 GFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKK 333
+ M S VG V+V VL + +G+V LTMK+
Sbjct: 707 FVKHPMDVVS--VGDNVTVWVLNVDVKKGRVGLTMKQ 741
>gi|416161433|ref|ZP_11606398.1| ribosomal protein S1 [Neisseria meningitidis N1568]
gi|325128402|gb|EGC51285.1| ribosomal protein S1 [Neisseria meningitidis N1568]
Length = 559
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 97/193 (50%), Gaps = 33/193 (17%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E+L G+ G V++I +GAF+D G DGL+H++ L+ VK ++ VGQEV+ ++
Sbjct: 186 ENLQEGSVIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKV 244
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
++ + E R+SL M+ Q + SG TRR + +
Sbjct: 245 LKFDQEKQRVSLGMK---------QLGEDPWSG----LTRR----------------YPQ 275
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G L G V NLT GAF+ + +G EG + S E D N+ +Q+G EV V +L I
Sbjct: 276 GTRLFGKVSNLTDYGAFVEIEQGIEGLVHVS-EMDWTNKNVHPSKVVQLGDEVEVMILEI 334
Query: 323 SRG--QVTLTMKK 333
G +++L MK+
Sbjct: 335 DEGRRRISLGMKQ 347
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 46/197 (23%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS-----DNFVKDVGSIVSVGQEVKVRL 202
G +G V+SI FG F+ DGLVH+S LS + V+ G+EV+ +
Sbjct: 363 GDKISGAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKK----GEEVEAVV 418
Query: 203 IEANAETGRISLTMR--ESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKF 260
+ + E RISL ++ E D D
Sbjct: 419 LAIDVEKERISLGIKQLEGDPFGNFISVND------------------------------ 448
Query: 261 VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVL 320
KG ++G+VK++ GA I+L + EG+LP SE + D ++ + L+ G EV ++
Sbjct: 449 -KGSLVKGSVKSVDAKGAVIALSDEVEGYLPASEFAADRVEDLT--TKLKEGDEVEAVIV 505
Query: 321 RISRGQ--VTLTMKKED 335
+ R + L++K +D
Sbjct: 506 TVDRKNRSIKLSVKAKD 522
>gi|119897950|ref|YP_933163.1| transcription accessory protein [Azoarcus sp. BH72]
gi|119670363|emb|CAL94276.1| transcription accessory protein [Azoarcus sp. BH72]
Length = 773
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 52/79 (65%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S L++ FVKD S+V GQ VKV++
Sbjct: 645 KDLEPGMMLEGVVTNVTNFGAFVDIGVHQDGLVHISALAERFVKDPHSVVKAGQVVKVKV 704
Query: 203 IEANAETGRISLTMRESDD 221
+E + RI+LTMR D+
Sbjct: 705 LEVDIPRNRIALTMRMGDE 723
Score = 40.0 bits (92), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 15/113 (13%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E +T F +G + LEG V N+T GAF+ + ++G + S
Sbjct: 623 KPGRDPRPEFRTASFREGIETLKDLEPGMMLEGVVTNVTNFGAFVDIGVHQDGLVHISAL 682
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKEDDVGSNLQLTQG 346
++ + S ++ GQ V V+VL I R ++ LTM+ D+ QG
Sbjct: 683 AERFVKDPH--SVVKAGQVVKVKVLEVDIPRNRIALTMRMGDEAAPKRADDQG 733
>gi|15677167|ref|NP_274320.1| 30S ribosomal protein S1 [Neisseria meningitidis MC58]
gi|385857372|ref|YP_005903884.1| 30S ribosomal protein S1 [Neisseria meningitidis NZ-05/33]
gi|421554905|ref|ZP_16000844.1| ribosomal protein S1 [Neisseria meningitidis 98008]
gi|433465249|ref|ZP_20422731.1| ribosomal protein S1 [Neisseria meningitidis NM422]
gi|433467450|ref|ZP_20424904.1| ribosomal protein S1 [Neisseria meningitidis 87255]
gi|433488586|ref|ZP_20445748.1| ribosomal protein S1 [Neisseria meningitidis M13255]
gi|433490629|ref|ZP_20447755.1| ribosomal protein S1 [Neisseria meningitidis NM418]
gi|433492701|ref|ZP_20449794.1| ribosomal protein S1 [Neisseria meningitidis NM586]
gi|433494835|ref|ZP_20451903.1| ribosomal protein S1 [Neisseria meningitidis NM762]
gi|433497002|ref|ZP_20454040.1| ribosomal protein S1 [Neisseria meningitidis M7089]
gi|433499064|ref|ZP_20456073.1| ribosomal protein S1 [Neisseria meningitidis M7124]
gi|433501040|ref|ZP_20458026.1| ribosomal protein S1 [Neisseria meningitidis NM174]
gi|433503217|ref|ZP_20460178.1| ribosomal protein S1 [Neisseria meningitidis NM126]
gi|433504927|ref|ZP_20461866.1| ribosomal protein S1 [Neisseria meningitidis 9506]
gi|433507312|ref|ZP_20464220.1| ribosomal protein S1 [Neisseria meningitidis 9757]
gi|433509595|ref|ZP_20466464.1| ribosomal protein S1 [Neisseria meningitidis 12888]
gi|433511518|ref|ZP_20468345.1| ribosomal protein S1 [Neisseria meningitidis 4119]
gi|81784541|sp|Q9JZ44.1|RS1_NEIMB RecName: Full=30S ribosomal protein S1
gi|7226541|gb|AAF41676.1| 30S ribosomal protein S1 [Neisseria meningitidis MC58]
gi|325208261|gb|ADZ03713.1| ribosomal protein S1 [Neisseria meningitidis NZ-05/33]
gi|402332058|gb|EJU67389.1| ribosomal protein S1 [Neisseria meningitidis 98008]
gi|432202284|gb|ELK58348.1| ribosomal protein S1 [Neisseria meningitidis 87255]
gi|432203193|gb|ELK59247.1| ribosomal protein S1 [Neisseria meningitidis NM422]
gi|432223419|gb|ELK79200.1| ribosomal protein S1 [Neisseria meningitidis M13255]
gi|432227620|gb|ELK83329.1| ribosomal protein S1 [Neisseria meningitidis NM418]
gi|432228487|gb|ELK84187.1| ribosomal protein S1 [Neisseria meningitidis NM586]
gi|432230038|gb|ELK85717.1| ribosomal protein S1 [Neisseria meningitidis NM762]
gi|432233495|gb|ELK89122.1| ribosomal protein S1 [Neisseria meningitidis M7089]
gi|432234898|gb|ELK90518.1| ribosomal protein S1 [Neisseria meningitidis M7124]
gi|432236331|gb|ELK91940.1| ribosomal protein S1 [Neisseria meningitidis NM174]
gi|432239982|gb|ELK95526.1| ribosomal protein S1 [Neisseria meningitidis NM126]
gi|432241052|gb|ELK96582.1| ribosomal protein S1 [Neisseria meningitidis 9506]
gi|432241677|gb|ELK97206.1| ribosomal protein S1 [Neisseria meningitidis 9757]
gi|432246983|gb|ELL02429.1| ribosomal protein S1 [Neisseria meningitidis 12888]
gi|432247566|gb|ELL03003.1| ribosomal protein S1 [Neisseria meningitidis 4119]
Length = 561
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 97/193 (50%), Gaps = 33/193 (17%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E+L G+ G V++I +GAF+D G DGL+H++ L+ VK ++ VGQEV+ ++
Sbjct: 188 ENLQEGSVIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKV 246
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
++ + E R+SL M+ Q + SG TRR + +
Sbjct: 247 LKFDQEKQRVSLGMK---------QLGEDPWSG----LTRR----------------YPQ 277
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G L G V NLT GAF+ + +G EG + S E D N+ +Q+G EV V +L I
Sbjct: 278 GTRLFGKVSNLTDYGAFVEIEQGIEGLVHVS-EMDWTNKNVHPSKVVQLGDEVEVMILEI 336
Query: 323 SRG--QVTLTMKK 333
G +++L MK+
Sbjct: 337 DEGRRRISLGMKQ 349
Score = 49.3 bits (116), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 46/197 (23%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS-----DNFVKDVGSIVSVGQEVKVRL 202
G +G V+SI FG F+ DGLVH+S LS + V+ G+EV+ +
Sbjct: 365 GDKISGAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKK----GEEVEAVV 420
Query: 203 IEANAETGRISLTMR--ESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKF 260
+ + E RISL ++ E D D
Sbjct: 421 LAIDVEKERISLGIKQLEGDPFGNFISVND------------------------------ 450
Query: 261 VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVL 320
KG ++G+VK++ GA I+L + EG+LP SE + D ++ + L+ G EV ++
Sbjct: 451 -KGSLVKGSVKSVDAKGAVIALSDEVEGYLPASEFAADRVEDLT--TKLKEGDEVEAVIV 507
Query: 321 RISRGQ--VTLTMKKED 335
+ R + L++K +D
Sbjct: 508 TVDRKNRSIKLSVKAKD 524
>gi|389695895|ref|ZP_10183537.1| transcriptional accessory protein [Microvirga sp. WSM3557]
gi|388584701|gb|EIM24996.1| transcriptional accessory protein [Microvirga sp. WSM3557]
Length = 781
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAF+D G DGLVH+S L+D FVKD ++V G VKV
Sbjct: 644 KISDLKPGMMLEGVVTNVAAFGAFVDVGVHQDGLVHISALADTFVKDPRTVVKPGDIVKV 703
Query: 201 RLIEANAETGRISLTMRESDDISKLQQ--QKDATASGDKVRT 240
+++E + RISL+MR SD K Q Q D A+ K R+
Sbjct: 704 KVLEVDVPRKRISLSMRMSDPAEKRPQGRQDDNRAAFQKHRS 745
>gi|119962080|ref|YP_946901.1| transcriptional accessory protein [Arthrobacter aurescens TC1]
gi|119948939|gb|ABM07850.1| putative transcriptional accessory protein [Arthrobacter aurescens
TC1]
Length = 818
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 52/81 (64%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAF+D G DGLVHVS LS+ FV D IV GQ V+V
Sbjct: 652 KISDLKPGMILEGTVTNVAAFGAFVDVGVHQDGLVHVSALSNKFVSDPREIVKSGQVVRV 711
Query: 201 RLIEANAETGRISLTMRESDD 221
+++EA+ E RISLT+R D+
Sbjct: 712 KVLEADPERKRISLTLRLDDE 732
>gi|254805102|ref|YP_003083323.1| 30S ribosomal protein S1 [Neisseria meningitidis alpha14]
gi|254668644|emb|CBA06288.1| 30S ribosomal protein S1 [Neisseria meningitidis alpha14]
Length = 561
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 97/193 (50%), Gaps = 33/193 (17%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E+L G+ G V++I +GAF+D G DGL+H++ L+ VK ++ VGQEV+ ++
Sbjct: 188 ENLQEGSVIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKV 246
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
++ + E R+SL M+ Q + SG TRR + +
Sbjct: 247 LKFDQEKQRVSLGMK---------QLGEDPWSG----LTRR----------------YPQ 277
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G L G V NLT GAF+ + +G EG + S E D N+ +Q+G EV V +L I
Sbjct: 278 GTRLFGKVSNLTDYGAFVEIEQGIEGLVHVS-EMDWTNKNVHPSKVVQLGDEVEVMILEI 336
Query: 323 SRG--QVTLTMKK 333
G +++L MK+
Sbjct: 337 DEGRRRISLGMKQ 349
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 46/197 (23%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS-----DNFVKDVGSIVSVGQEVKVRL 202
G +G V+SI FG F+ DGLVH+S LS + V+ G+EV+ +
Sbjct: 365 GDKISGAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKK----GEEVEAVV 420
Query: 203 IEANAETGRISLTMR--ESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKF 260
+ + E RISL ++ E D D
Sbjct: 421 LAIDVEKERISLGIKQLEGDPFGNFISVND------------------------------ 450
Query: 261 VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVL 320
KG ++G+VK++ GA I+L + EG+LP SE + D ++ + L+ G EV ++
Sbjct: 451 -KGSLVKGSVKSVDAKGAVIALSDEVEGYLPASEFAADRVEDLT--TKLKEGDEVEAVIV 507
Query: 321 RISRGQ--VTLTMKKED 335
+ R + L++K +D
Sbjct: 508 TVDRKNRSIKLSVKAKD 524
>gi|374623810|ref|ZP_09696309.1| RNA-binding S1 domain-containing protein [Ectothiorhodospira sp.
PHS-1]
gi|373942910|gb|EHQ53455.1| RNA-binding S1 domain-containing protein [Ectothiorhodospira sp.
PHS-1]
Length = 774
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 64/111 (57%), Gaps = 10/111 (9%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
+ +DL PG G V ++ FGAF+D G DGLVH+S LSD F+KD +V G VKV
Sbjct: 644 RLQDLQPGMVLEGTVTNVANFGAFVDIGVHQDGLVHISALSDRFIKDPRDVVRAGDVVKV 703
Query: 201 RLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQK 251
+++E + E RI+L+MR D+ + A+G R TR S S G+K
Sbjct: 704 KVMEVDLERKRIALSMRLDDEPGR-------EANG---RPTRESRSGQGRK 744
>gi|300726999|ref|ZP_07060419.1| S1 RNA binding domain protein [Prevotella bryantii B14]
gi|299775722|gb|EFI72312.1| S1 RNA binding domain protein [Prevotella bryantii B14]
Length = 703
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 50/75 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDLIPG G V +I FGAF+D G DGLVH+S+L+D ++ D +V + Q V+V++
Sbjct: 627 EDLIPGMELPGIVTNITNFGAFVDVGVHQDGLVHISQLADKYISDPAEVVKLHQHVRVKV 686
Query: 203 IEANAETGRISLTMR 217
+E + RISLTM+
Sbjct: 687 LEVDLRRHRISLTMK 701
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 52/99 (52%), Gaps = 15/99 (15%)
Query: 247 KPGQK-RDEMKTTKF----------VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG RD+++ +F + G +L G V N+T GAF+ + ++G + S+
Sbjct: 605 KPGLDPRDKIEVFEFDKNVHTPEDLIPGMELPGIVTNITNFGAFVDVGVHQDGLVHISQL 664
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMK 332
+D ++ +++ Q V V+VL + R +++LTMK
Sbjct: 665 ADKYISD--PAEVVKLHQHVRVKVLEVDLRRHRISLTMK 701
>gi|385328569|ref|YP_005882872.1| 30S ribosomal protein S1 [Neisseria meningitidis alpha710]
gi|308389421|gb|ADO31741.1| 30S ribosomal protein S1 [Neisseria meningitidis alpha710]
gi|389605586|emb|CCA44503.1| 30S ribosomal protein S1 [Neisseria meningitidis alpha522]
Length = 561
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 97/193 (50%), Gaps = 33/193 (17%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E+L G+ G V++I +GAF+D G DGL+H++ L+ VK ++ VGQEV+ ++
Sbjct: 188 ENLQEGSVIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKV 246
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
++ + E R+SL M+ Q + SG TRR + +
Sbjct: 247 LKFDQEKQRVSLGMK---------QLGEDPWSG----LTRR----------------YPQ 277
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G L G V NLT GAF+ + +G EG + S E D N+ +Q+G EV V +L I
Sbjct: 278 GTRLFGKVSNLTDYGAFVEIEQGIEGLVHVS-EMDWTNKNVHPSKVVQLGDEVEVMILEI 336
Query: 323 SRG--QVTLTMKK 333
G +++L MK+
Sbjct: 337 DEGRRRISLGMKQ 349
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 46/197 (23%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS-----DNFVKDVGSIVSVGQEVKVRL 202
G +G V+SI FG F+ DGLVH+S LS + V+ G+EV+ +
Sbjct: 365 GDKISGAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKK----GEEVEAVV 420
Query: 203 IEANAETGRISLTMR--ESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKF 260
+ + E RISL ++ E D D
Sbjct: 421 LAIDVEKERISLGIKQLEGDPFGNFISVND------------------------------ 450
Query: 261 VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVL 320
KG ++G+VK++ GA I+L + EG+LP SE + D ++ + L+ G EV ++
Sbjct: 451 -KGSLVKGSVKSVDAKGAVIALSDEVEGYLPASEFAADRVEDLT--TKLKEGNEVEAVIV 507
Query: 321 RISRGQ--VTLTMKKED 335
+ R + L++K +D
Sbjct: 508 TVDRKNRSIKLSVKAKD 524
>gi|170694794|ref|ZP_02885945.1| RNA binding S1 domain protein [Burkholderia graminis C4D1M]
gi|170140425|gb|EDT08602.1| RNA binding S1 domain protein [Burkholderia graminis C4D1M]
Length = 783
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 51/82 (62%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAFID G DGLVHVS +S F+KD +V GQ VKV
Sbjct: 649 KVSDLTPGMVLEGVVTNVAAFGAFIDVGVHQDGLVHVSAMSTKFIKDPHEVVKAGQIVKV 708
Query: 201 RLIEANAETGRISLTMRESDDI 222
+++E + + RI+LTMR D+
Sbjct: 709 KVLEVDVKRQRIALTMRLDDEF 730
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 15/115 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT F +G + LEG V N+ GAFI + +
Sbjct: 620 VRDILLELEKPGRDPRPEFKTATFREGVEKVSDLTPGMVLEGVVTNVAAFGAFIDVGVHQ 679
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKEDDVGS 339
+G + S S + ++ GQ V V+VL + R ++ LTM+ +D+ G+
Sbjct: 680 DGLVHVSAMSTKFIKDPH--EVVKAGQIVKVKVLEVDVKRQRIALTMRLDDEFGA 732
>gi|385855361|ref|YP_005901874.1| 30S ribosomal protein S1 [Neisseria meningitidis M01-240355]
gi|325204302|gb|ADY99755.1| ribosomal protein S1 [Neisseria meningitidis M01-240355]
Length = 559
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 97/193 (50%), Gaps = 33/193 (17%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E+L G+ G V++I +GAF+D G DGL+H++ L+ VK ++ VGQEV+ ++
Sbjct: 186 ENLQEGSVIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKV 244
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
++ + E R+SL M+ Q + SG TRR + +
Sbjct: 245 LKFDQEKQRVSLGMK---------QLGEDPWSG----LTRR----------------YPQ 275
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G L G V NLT GAF+ + +G EG + S E D N+ +Q+G EV V +L I
Sbjct: 276 GTRLFGKVSNLTDYGAFVEIEQGIEGLVHVS-EMDWTNKNVHPSKVVQLGDEVEVMILEI 334
Query: 323 SRG--QVTLTMKK 333
G +++L MK+
Sbjct: 335 DEGRRRISLGMKQ 347
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 85/197 (43%), Gaps = 46/197 (23%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS-----DNFVKDVGSIVSVGQEVKVRL 202
G +G V+SI FG F+ DGLVH+S LS + V+ G+EV+ +
Sbjct: 363 GDKISGAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKK----GEEVEAVV 418
Query: 203 IEANAETGRISLTMR--ESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKF 260
+ + E RISL ++ E D D
Sbjct: 419 LAIDVEKERISLGIKQLEGDPFGNFISVND------------------------------ 448
Query: 261 VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVL 320
KG ++G+VK++ GA ++L + EG+LP SE + D ++ + L+ G EV ++
Sbjct: 449 -KGSLVKGSVKSVDAKGAVVALSDEVEGYLPASEFAADRVEDLT--TKLKEGDEVEAVIV 505
Query: 321 RISRGQ--VTLTMKKED 335
+ R + L++K +D
Sbjct: 506 TVDRKNRSIKLSVKAKD 522
>gi|161870174|ref|YP_001599344.1| 30S ribosomal protein S1 [Neisseria meningitidis 053442]
gi|385324031|ref|YP_005878470.1| 30S ribosomal protein S1 [Neisseria meningitidis 8013]
gi|385338154|ref|YP_005892027.1| 30S ribosomal protein S1 [Neisseria meningitidis WUE 2594]
gi|421559129|ref|ZP_16005004.1| ribosomal protein S1 [Neisseria meningitidis 92045]
gi|421565635|ref|ZP_16011408.1| ribosomal protein S1 [Neisseria meningitidis NM3081]
gi|421567653|ref|ZP_16013387.1| ribosomal protein S1 [Neisseria meningitidis NM3001]
gi|433473698|ref|ZP_20431059.1| ribosomal protein S1 [Neisseria meningitidis 97021]
gi|433475163|ref|ZP_20432504.1| ribosomal protein S1 [Neisseria meningitidis 88050]
gi|433482262|ref|ZP_20439522.1| ribosomal protein S1 [Neisseria meningitidis 2006087]
gi|433484245|ref|ZP_20441471.1| ribosomal protein S1 [Neisseria meningitidis 2002038]
gi|433486512|ref|ZP_20443707.1| ribosomal protein S1 [Neisseria meningitidis 97014]
gi|433513625|ref|ZP_20470415.1| ribosomal protein S1 [Neisseria meningitidis 63049]
gi|433515911|ref|ZP_20472679.1| ribosomal protein S1 [Neisseria meningitidis 2004090]
gi|433517698|ref|ZP_20474444.1| ribosomal protein S1 [Neisseria meningitidis 96023]
gi|433524124|ref|ZP_20480785.1| ribosomal protein S1 [Neisseria meningitidis 97020]
gi|433528373|ref|ZP_20484982.1| ribosomal protein S1 [Neisseria meningitidis NM3652]
gi|433530574|ref|ZP_20487163.1| ribosomal protein S1 [Neisseria meningitidis NM3642]
gi|433532843|ref|ZP_20489406.1| ribosomal protein S1 [Neisseria meningitidis 2007056]
gi|433534698|ref|ZP_20491238.1| ribosomal protein S1 [Neisseria meningitidis 2001212]
gi|433536923|ref|ZP_20493428.1| ribosomal protein S1 [Neisseria meningitidis 77221]
gi|161595727|gb|ABX73387.1| 30S ribosomal protein S1 [Neisseria meningitidis 053442]
gi|261392418|emb|CAX49960.1| 30S ribosomal protein S1 [Neisseria meningitidis 8013]
gi|319410568|emb|CBY90937.1| 30S ribosomal protein S1 [Neisseria meningitidis WUE 2594]
gi|402336524|gb|EJU71784.1| ribosomal protein S1 [Neisseria meningitidis 92045]
gi|402343686|gb|EJU78832.1| ribosomal protein S1 [Neisseria meningitidis NM3001]
gi|402344070|gb|EJU79212.1| ribosomal protein S1 [Neisseria meningitidis NM3081]
gi|432209996|gb|ELK65962.1| ribosomal protein S1 [Neisseria meningitidis 97021]
gi|432210981|gb|ELK66936.1| ribosomal protein S1 [Neisseria meningitidis 88050]
gi|432216055|gb|ELK71938.1| ribosomal protein S1 [Neisseria meningitidis 2006087]
gi|432220931|gb|ELK76748.1| ribosomal protein S1 [Neisseria meningitidis 2002038]
gi|432221797|gb|ELK77601.1| ribosomal protein S1 [Neisseria meningitidis 97014]
gi|432247157|gb|ELL02596.1| ribosomal protein S1 [Neisseria meningitidis 63049]
gi|432252837|gb|ELL08187.1| ribosomal protein S1 [Neisseria meningitidis 2004090]
gi|432253434|gb|ELL08778.1| ribosomal protein S1 [Neisseria meningitidis 96023]
gi|432259368|gb|ELL14639.1| ribosomal protein S1 [Neisseria meningitidis 97020]
gi|432265174|gb|ELL20370.1| ribosomal protein S1 [Neisseria meningitidis NM3652]
gi|432266666|gb|ELL21848.1| ribosomal protein S1 [Neisseria meningitidis 2007056]
gi|432267081|gb|ELL22262.1| ribosomal protein S1 [Neisseria meningitidis NM3642]
gi|432271440|gb|ELL26565.1| ribosomal protein S1 [Neisseria meningitidis 2001212]
gi|432273859|gb|ELL28956.1| ribosomal protein S1 [Neisseria meningitidis 77221]
Length = 561
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 97/193 (50%), Gaps = 33/193 (17%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E+L G+ G V++I +GAF+D G DGL+H++ L+ VK ++ VGQEV+ ++
Sbjct: 188 ENLQEGSVIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKV 246
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
++ + E R+SL M+ Q + SG TRR + +
Sbjct: 247 LKFDQEKQRVSLGMK---------QLGEDPWSG----LTRR----------------YPQ 277
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G L G V NLT GAF+ + +G EG + S E D N+ +Q+G EV V +L I
Sbjct: 278 GTRLFGKVSNLTDYGAFVEIEQGIEGLVHVS-EMDWTNKNVHPSKVVQLGDEVEVMILEI 336
Query: 323 SRG--QVTLTMKK 333
G +++L MK+
Sbjct: 337 DEGRRRISLGMKQ 349
Score = 49.3 bits (116), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 46/197 (23%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS-----DNFVKDVGSIVSVGQEVKVRL 202
G +G V+SI FG F+ DGLVH+S LS + V+ G+EV+ +
Sbjct: 365 GDKISGAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKK----GEEVEAVV 420
Query: 203 IEANAETGRISLTMR--ESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKF 260
+ + E RISL ++ E D D
Sbjct: 421 LAIDVEKERISLGIKQLEGDPFGNFISVND------------------------------ 450
Query: 261 VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVL 320
KG ++G+VK++ GA I+L + EG+LP SE + D ++ + L+ G EV ++
Sbjct: 451 -KGSLVKGSVKSVDAKGAVIALSDEVEGYLPASEFAADRVEDLT--TKLKEGDEVEAVIV 507
Query: 321 RISRGQ--VTLTMKKED 335
+ R + L++K +D
Sbjct: 508 TVDRKNRSIKLSVKAKD 524
>gi|403526137|ref|YP_006661024.1| protein Tex [Arthrobacter sp. Rue61a]
gi|403228564|gb|AFR27986.1| protein Tex [Arthrobacter sp. Rue61a]
Length = 840
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 52/81 (64%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAF+D G DGLVHVS LS+ FV D IV GQ V+V
Sbjct: 674 KISDLKPGMILEGTVTNVAAFGAFVDVGVHQDGLVHVSALSNKFVSDPREIVKSGQVVRV 733
Query: 201 RLIEANAETGRISLTMRESDD 221
+++EA+ E RISLT+R D+
Sbjct: 734 KVLEADPERKRISLTLRLDDE 754
>gi|399543520|ref|YP_006556828.1| protein yhgF [Marinobacter sp. BSs20148]
gi|399158852|gb|AFP29415.1| Protein yhgF [Marinobacter sp. BSs20148]
Length = 781
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 61/109 (55%), Gaps = 3/109 (2%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S L+D F+KD +V G VKV++
Sbjct: 644 KDLEPGMVLEGSVTNVTNFGAFVDIGVHQDGLVHISALADRFIKDPREVVKAGDIVKVKV 703
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQK 251
+E + RI+LTMR SD QQ GDK + R+ + QK
Sbjct: 704 MEVDIPRKRIALTMRMSDQPG---QQPAERPRGDKNPSPNRNNAASAQK 749
>gi|418288473|ref|ZP_12900955.1| ribosomal protein S1 [Neisseria meningitidis NM233]
gi|418290719|ref|ZP_12902841.1| ribosomal protein S1 [Neisseria meningitidis NM220]
gi|372201127|gb|EHP15090.1| ribosomal protein S1 [Neisseria meningitidis NM220]
gi|372201816|gb|EHP15696.1| ribosomal protein S1 [Neisseria meningitidis NM233]
Length = 561
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 97/193 (50%), Gaps = 33/193 (17%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E+L G+ G V++I +GAF+D G DGL+H++ L+ VK ++ VGQEV+ ++
Sbjct: 188 ENLQEGSVIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKV 246
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
++ + E R+SL M+ Q + SG TRR + +
Sbjct: 247 LKFDQEKQRVSLGMK---------QLGEDPWSG----LTRR----------------YPQ 277
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G L G V NLT GAF+ + +G EG + S E D N+ +Q+G EV V +L I
Sbjct: 278 GTRLFGKVSNLTDYGAFVEIEQGIEGLVHVS-EMDWTNKNVHPSKVVQLGDEVEVMILEI 336
Query: 323 SRG--QVTLTMKK 333
G +++L MK+
Sbjct: 337 DEGRRRISLGMKQ 349
Score = 48.5 bits (114), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 85/197 (43%), Gaps = 46/197 (23%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS-----DNFVKDVGSIVSVGQEVKVRL 202
G +G V+SI FG F+ DGLVH+S LS + V+ G+EV+ +
Sbjct: 365 GDKISGAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKK----GEEVEAVV 420
Query: 203 IEANAETGRISLTMR--ESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKF 260
+ + E RISL ++ E D D
Sbjct: 421 LAIDVEKERISLGIKQLEGDPFGNFISVND------------------------------ 450
Query: 261 VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVL 320
KG ++G+VK++ GA ++L + EG+LP SE + D ++ + L+ G EV ++
Sbjct: 451 -KGSLVKGSVKSVDAKGAVVALSDEVEGYLPASEFAADRVEDLT--TKLKEGDEVEAVIV 507
Query: 321 RISRGQ--VTLTMKKED 335
+ R + L++K +D
Sbjct: 508 TVDRKNRSIKLSVKAKD 524
>gi|340789100|ref|YP_004754565.1| putative polyribonucleotide nucleotidyltransferase [Collimonas
fungivorans Ter331]
gi|340554367|gb|AEK63742.1| putative Polyribonucleotide nucleotidyltransferase [Collimonas
fungivorans Ter331]
Length = 780
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 58/104 (55%), Gaps = 16/104 (15%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL P G V ++ FGAF+D G DGLVH+S LS+ FVKD S+V GQ VKV+++
Sbjct: 659 DLRPDMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNTFVKDPHSVVKAGQVVKVKVL 718
Query: 204 EANAETGRISLTMRESD----------------DISKLQQQKDA 231
E + + RI+LTMR +D D +L QQK A
Sbjct: 719 EVDEKRKRIALTMRLTDNAPVAGAKPEQRADRNDAKRLSQQKQA 762
>gi|421540558|ref|ZP_15986703.1| ribosomal protein S1 [Neisseria meningitidis 93004]
gi|402318712|gb|EJU54228.1| ribosomal protein S1 [Neisseria meningitidis 93004]
Length = 561
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 97/193 (50%), Gaps = 33/193 (17%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E+L G+ G V++I +GAF+D G DGL+H++ L+ VK ++ VGQEV+ ++
Sbjct: 188 ENLQEGSVIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKV 246
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
++ + E R+SL M+ Q + SG TRR + +
Sbjct: 247 LKFDQEKQRVSLGMK---------QLGEDPWSG----LTRR----------------YPQ 277
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G L G V NLT GAF+ + +G EG + S E D N+ +Q+G EV V +L I
Sbjct: 278 GTRLFGKVSNLTDYGAFVEIEQGIEGLVHVS-EMDWTNKNVHPSKVVQLGDEVEVMILEI 336
Query: 323 SRG--QVTLTMKK 333
G +++L MK+
Sbjct: 337 DEGRRRISLGMKQ 349
Score = 49.3 bits (116), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 46/197 (23%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS-----DNFVKDVGSIVSVGQEVKVRL 202
G +G V+SI FG F+ DGLVH+S LS + V+ G+EV+ +
Sbjct: 365 GDKISGAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKK----GEEVEAVV 420
Query: 203 IEANAETGRISLTMR--ESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKF 260
+ + E RISL ++ E D D
Sbjct: 421 LAIDVEKERISLGIKQLEGDPFGNFISVND------------------------------ 450
Query: 261 VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVL 320
KG ++G+VK++ GA I+L + EG+LP SE + D ++ + L+ G EV ++
Sbjct: 451 -KGSLVKGSVKSVDAKGAVIALSDEVEGYLPASEFAADRVEDLT--TKLKEGDEVEAVIV 507
Query: 321 RISRGQ--VTLTMKKED 335
+ R + L++K +D
Sbjct: 508 TVDRKNRSIKLSVKAKD 524
>gi|428306321|ref|YP_007143146.1| Tex-like protein [Crinalium epipsammum PCC 9333]
gi|428247856|gb|AFZ13636.1| Tex-like protein [Crinalium epipsammum PCC 9333]
Length = 716
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL G G V ++ FGAF+D G DGLVH+S+L+D FV D IV VGQ VKVR++
Sbjct: 642 DLEVGMELEGIVTNVANFGAFVDIGVHQDGLVHISQLADRFVSDPKQIVKVGQVVKVRVM 701
Query: 204 EANAETGRISLTMR 217
E N + RISL+MR
Sbjct: 702 EVNEKLKRISLSMR 715
>gi|385800617|ref|YP_005837021.1| Tex-like protein [Halanaerobium praevalens DSM 2228]
gi|309389981|gb|ADO77861.1| Tex-like protein [Halanaerobium praevalens DSM 2228]
Length = 723
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 52/78 (66%)
Query: 140 VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
+K ED+ PG F GKVR+I FGAFID G DGL+H+S +S +V D IV +GQ +
Sbjct: 645 LKIEDIKPGLIFKGKVRNIVDFGAFIDIGLKQDGLLHISEMSQMYVNDPFEIVEIGQNID 704
Query: 200 VRLIEANAETGRISLTMR 217
V+++ + GRISLT++
Sbjct: 705 VQVLAVDQSRGRISLTLK 722
Score = 47.4 bits (111), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 12/100 (12%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEES-- 296
R R S P ++D +K G +G V+N+ GAFI + ++G L SE S
Sbjct: 629 RDPRASMPAPIFRKDILKIEDIKPGLIFKGKVRNIVDFGAFIDIGLKQDGLLHISEMSQM 688
Query: 297 --DDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMK 332
+D F +++GQ + V+VL + SRG+++LT+K
Sbjct: 689 YVNDPF------EIVEIGQNIDVQVLAVDQSRGRISLTLK 722
>gi|323526564|ref|YP_004228717.1| Tex-like protein [Burkholderia sp. CCGE1001]
gi|323383566|gb|ADX55657.1| Tex-like protein protein-like protein [Burkholderia sp. CCGE1001]
Length = 780
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 51/82 (62%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAFID G DGLVHVS +S F+KD +V GQ VKV
Sbjct: 649 KVSDLTPGMVLEGVVTNVAAFGAFIDVGVHQDGLVHVSAMSTKFIKDPHEVVKAGQIVKV 708
Query: 201 RLIEANAETGRISLTMRESDDI 222
+++E + + RI+LTMR D+
Sbjct: 709 KVLEVDVKRQRIALTMRLDDEF 730
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 15/115 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT F +G + LEG V N+ GAFI + +
Sbjct: 620 VRDILLELEKPGRDPRPEFKTATFREGVEKVSDLTPGMVLEGVVTNVAAFGAFIDVGVHQ 679
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKEDDVGS 339
+G + S S + ++ GQ V V+VL + R ++ LTM+ +D+ G+
Sbjct: 680 DGLVHVSAMSTKFIKDPH--EVVKAGQIVKVKVLEVDVKRQRIALTMRLDDEFGA 732
>gi|377578356|ref|ZP_09807334.1| hypothetical protein YhgF [Escherichia hermannii NBRC 105704]
gi|377540286|dbj|GAB52499.1| hypothetical protein YhgF [Escherichia hermannii NBRC 105704]
Length = 772
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 62/109 (56%), Gaps = 10/109 (9%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LSD F+ D +V G VKV+++
Sbjct: 647 DLMPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDKFIDDPHKVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKR 252
E + + RI+LTMR L +Q T + RTT S+P Q++
Sbjct: 707 EVDLQRKRIALTMR-------LDEQPGETGAR---RTTGAPASRPAQQQ 745
Score = 40.0 bits (92), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 15/105 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT +F +G + LEG V N+T GAF+ + ++G + S
Sbjct: 624 KPGRDPRPEFKTAQFAEGVETLNDLMPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSL 683
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDDVG 338
SD + ++ G V V+VL + R ++ LTM+ ++ G
Sbjct: 684 SDKFIDD--PHKVVKAGDIVKVKVLEVDLQRKRIALTMRLDEQPG 726
>gi|300691366|ref|YP_003752361.1| transcriptional accessory protein [Ralstonia solanacearum PSI07]
gi|299078426|emb|CBJ51078.1| transcriptional accessory protein [Ralstonia solanacearum PSI07]
Length = 779
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 63/108 (58%), Gaps = 2/108 (1%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAFID G DGLVHVS LS FV+D +V GQ VKV++
Sbjct: 659 KDLQPGMVLEGVVTNVAAFGAFIDIGVHQDGLVHVSALSTKFVRDPHEVVKPGQVVKVKV 718
Query: 203 IEANAETGRISLTMRESDDISKLQQQK--DATASGDKVRTTRRSTSKP 248
+E + + RI LTMR +D+ ++ + D A G++ +R +P
Sbjct: 719 MEVDVKRNRIGLTMRLADEPGQVPARSGGDRPAGGNRNGGQQRRAPEP 766
>gi|74317963|ref|YP_315703.1| hypothetical protein Tbd_1945 [Thiobacillus denitrificans ATCC
25259]
gi|74057458|gb|AAZ97898.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC
25259]
Length = 800
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 64/110 (58%), Gaps = 12/110 (10%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL P G V ++ FGAF+D G DGLVH+S LS++FVKD ++V GQ VKV+++
Sbjct: 659 DLKPEMVLEGVVTNVAAFGAFVDIGVHQDGLVHISALSNSFVKDPHTVVKAGQIVKVKVL 718
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRT-TRRSTSKPGQKR 252
E + + RI+LTMR D A+G+ R TR++ + GQ R
Sbjct: 719 EVDEKRKRIALTMRLGD-----------AAAGNTARHETRQTRHEAGQAR 757
>gi|300853471|ref|YP_003778455.1| transcriptional accessory protein [Clostridium ljungdahlii DSM
13528]
gi|300433586|gb|ADK13353.1| transcriptional accessory protein [Clostridium ljungdahlii DSM
13528]
Length = 721
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 51/76 (67%)
Query: 145 LIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIE 204
L PG TG VR++ FGAF+D G DGLVH+S+LSD FVK +V VG V+V ++E
Sbjct: 645 LKPGMVLTGTVRNVADFGAFVDIGVHQDGLVHISQLSDKFVKHPLDVVQVGDIVQVTVLE 704
Query: 205 ANAETGRISLTMRESD 220
+ + RISL+M+ SD
Sbjct: 705 VDEKRKRISLSMKSSD 720
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP K + + G L GTV+N+ GAF+ + ++G + S+ SD
Sbjct: 624 RDPREELPKPILKTGIIDINQLKPGMVLTGTVRNVADFGAFVDIGVHQDGLVHISQLSDK 683
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKED 335
+ + +QVG V V VL + R +++L+MK D
Sbjct: 684 FVKHPL--DVVQVGDIVQVTVLEVDEKRKRISLSMKSSD 720
>gi|359458889|ref|ZP_09247452.1| S1 RNA-binding domain-containing protein [Acaryochloris sp. CCMEE
5410]
Length = 720
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL P G V ++ FGAF+D G DGLVH+S+++D FVKD IV VGQ VKVR++
Sbjct: 641 DLKPEMELEGIVTNVTNFGAFVDVGVHQDGLVHISQMADQFVKDPKQIVKVGQVVKVRVL 700
Query: 204 EANAETGRISLTMR 217
E N + RI L+MR
Sbjct: 701 EVNQKLKRIGLSMR 714
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 15/99 (15%)
Query: 247 KPGQK-RDEMKTTKFVKG----------QDLEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E K KF +G +LEG V N+T GAF+ + ++G + S+
Sbjct: 618 KPGRDPRAEFKYAKFKEGITELTDLKPEMELEGIVTNVTNFGAFVDVGVHQDGLVHISQM 677
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRISR--GQVTLTMK 332
+D + ++VGQ V VRVL +++ ++ L+M+
Sbjct: 678 ADQFVKD--PKQIVKVGQVVKVRVLEVNQKLKRIGLSMR 714
>gi|56709090|ref|YP_165135.1| S1 RNA-binding domain-containing protein [Ruegeria pomeroyi DSS-3]
gi|56680775|gb|AAV97440.1| S1 RNA binding domain protein [Ruegeria pomeroyi DSS-3]
Length = 765
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVHVS+L+D FVKD +V GQ +KV +
Sbjct: 641 DLRPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKTGQVIKVTVT 700
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTR 242
E + RI L+MR+ D + +Q+K A + G + R+ R
Sbjct: 701 EIDVPRKRIGLSMRK-DGGASARQEKPARSGGPRDRSPR 738
>gi|407714012|ref|YP_006834577.1| Tex-like protein [Burkholderia phenoliruptrix BR3459a]
gi|407236196|gb|AFT86395.1| Tex-like protein [Burkholderia phenoliruptrix BR3459a]
Length = 780
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 51/82 (62%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAFID G DGLVHVS +S F+KD +V GQ VKV
Sbjct: 649 KVSDLTPGMVLEGVVTNVAAFGAFIDVGVHQDGLVHVSAMSTKFIKDPHEVVKAGQIVKV 708
Query: 201 RLIEANAETGRISLTMRESDDI 222
+++E + + RI+LTMR D+
Sbjct: 709 KVLEVDVKRQRIALTMRLDDEF 730
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 15/115 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT F +G + LEG V N+ GAFI + +
Sbjct: 620 VRDILLELEKPGRDPRPEFKTATFREGVEKVSDLTPGMVLEGVVTNVAAFGAFIDVGVHQ 679
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKEDDVGS 339
+G + S S + ++ GQ V V+VL + R ++ LTM+ +D+ G+
Sbjct: 680 DGLVHVSAMSTKFIKDPH--EVVKAGQIVKVKVLEVDVKRQRIALTMRLDDEFGA 732
>gi|157676010|emb|CAP07846.1| putative transcriptional accessory protein [Neisseria animalis]
Length = 762
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 51/79 (64%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S LSD FV+D +V G VKV++
Sbjct: 635 KDLQPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSDKFVQDPREVVKAGDVVKVKV 694
Query: 203 IEANAETGRISLTMRESDD 221
+E +A RI+LTMR D+
Sbjct: 695 LEVDAARKRIALTMRLDDE 713
Score = 39.7 bits (91), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 15/105 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E +T F +G + LEG V N+ GAF+ + ++G + S
Sbjct: 613 KPGRDPRGEFQTATFAEGINEIKDLQPGMILEGVVSNVANFGAFVDIGVHQDGLVHISAL 672
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDDVG 338
SD + ++ G V V+VL + +R ++ LTM+ +D+ G
Sbjct: 673 SDKFVQDPR--EVVKAGDVVKVKVLEVDAARKRIALTMRLDDEPG 715
>gi|184152929|ref|YP_001841270.1| transcription accessory protein [Lactobacillus reuteri JCM 1112]
gi|227363522|ref|ZP_03847642.1| S1 domain RNA-binding protein [Lactobacillus reuteri MM2-3]
gi|325681871|ref|ZP_08161389.1| YhgF like protein [Lactobacillus reuteri MM4-1A]
gi|183224273|dbj|BAG24790.1| transcription accessory protein [Lactobacillus reuteri JCM 1112]
gi|227071459|gb|EEI09762.1| S1 domain RNA-binding protein [Lactobacillus reuteri MM2-3]
gi|324978515|gb|EGC15464.1| YhgF like protein [Lactobacillus reuteri MM4-1A]
Length = 727
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 84/163 (51%), Gaps = 15/163 (9%)
Query: 69 HKSALHIISATGINVAVEESDSPAADDDSAGASDIPSDVETSESSSIKSEASPTLAESRR 128
++ A II A GINV +E +P+ADD DV+ + +E + S +
Sbjct: 570 YQVAEKIIQAAGINV--DELGTPSADDKLKKI-----DVKQFTDDQVGTETVTDIISSLQ 622
Query: 129 S--RTARKSEMPPVKN------EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRL 180
R R S P+ EDL PG G VR++ FGAF+D G DGLVHVS++
Sbjct: 623 KPGRDLRDSMPAPLLRHDVMTIEDLKPGMKLQGTVRNVVDFGAFVDIGVKHDGLVHVSKM 682
Query: 181 SDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDIS 223
S F++D ++V+VG V V + + + + RI LTM E + ++
Sbjct: 683 SKQFIRDPRAMVAVGDIVDVWIDDVDLKRQRIQLTMLEPETVT 725
>gi|134096173|ref|YP_001101248.1| polyribonucleotide nucleotidyltransferase [Herminiimonas
arsenicoxydans]
gi|133740076|emb|CAL63127.1| putative transcription accessory protein TEX [Herminiimonas
arsenicoxydans]
Length = 780
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 51/77 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL P G V ++ FGAF+D G DGLVH+S LS+ FVKD ++V GQ VKV+++
Sbjct: 659 DLRPDMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNTFVKDPHTVVKAGQVVKVKVL 718
Query: 204 EANAETGRISLTMRESD 220
E + + RI+LTMR SD
Sbjct: 719 EVDEKRKRIALTMRLSD 735
>gi|159899614|ref|YP_001545861.1| RNA-binding S1 domain-containing protein [Herpetosiphon aurantiacus
DSM 785]
gi|159892653|gb|ABX05733.1| RNA binding S1 domain protein [Herpetosiphon aurantiacus DSM 785]
Length = 501
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 95/197 (48%), Gaps = 23/197 (11%)
Query: 139 PVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEV 198
P + DL G GKV S +G F+D G DGLVH+S +SD ++ +V +G V
Sbjct: 96 PRRLADLHAGMELDGKVTSTALYGVFVDIGVGRDGLVHISEMSDQRIESPTDVVQIGDIV 155
Query: 199 KVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTT 258
KVR+ + + RISLTMR + RR+ +P D++
Sbjct: 156 KVRVKSVDPDARRISLTMRSP-----------------RSEGRRRAPKRPEVNNDKLGEL 198
Query: 259 KFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVR 318
K G ++GTV + G F+ + G++G + SE S++ ++ VGQ + R
Sbjct: 199 K--PGDLVDGTVNGIAPFGVFVDIGVGKDGLVHISELSENRVEKAE--DAVTVGQSYTFR 254
Query: 319 VLRISRG--QVTLTMKK 333
VL + G +++L++++
Sbjct: 255 VLEVDTGAQRISLSLRR 271
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 100/210 (47%), Gaps = 24/210 (11%)
Query: 128 RSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKD 187
R R ++ E+ K +L PG G V I PFG F+D G DGLVH+S LS+N V+
Sbjct: 181 RRRAPKRPEVNNDKLGELKPGDLVDGTVNGIAPFGVFVDIGVGKDGLVHISELSENRVEK 240
Query: 188 VGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSK 247
V+VGQ R++E + RISL++R + + Q++ A
Sbjct: 241 AEDAVTVGQSYTFRVLEVDTGAQRISLSLRRAKE--DFQERPKAP--------------- 283
Query: 248 PGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGS 307
+R E+ G L+G V + GAF+ L G +G + SE S+ +
Sbjct: 284 ---RRREVNLDVIAPGTVLDGKVSGIAPFGAFVDLGVGRDGLVHISELSEGRVGKVD--D 338
Query: 308 SLQVGQEVSVRVLRI--SRGQVTLTMKKED 335
++VG V VRVL + +++LTM+ E+
Sbjct: 339 VVKVGDPVKVRVLEVDPDSKRISLTMRVEE 368
>gi|291619238|ref|YP_003521980.1| hypothetical protein PANA_3685 [Pantoea ananatis LMG 20103]
gi|291154268|gb|ADD78852.1| YhgF [Pantoea ananatis LMG 20103]
Length = 774
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAFID G DGLVH+S LSD FV+D +V G VKV+++
Sbjct: 646 DLMPGMVLEGAVTNVTNFGAFIDIGVHQDGLVHISSLSDKFVEDPHQVVKAGDIVKVKVM 705
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 706 EVDLQRKRIALTMR 719
Score = 39.7 bits (91), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 15/105 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT +F +G + LEG V N+T GAFI + ++G + S
Sbjct: 623 KPGRDPRPEFKTAQFAEGVETLNDLMPGMVLEGAVTNVTNFGAFIDIGVHQDGLVHISSL 682
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDDVG 338
SD + ++ G V V+V+ + R ++ LTM+ ++ G
Sbjct: 683 SDKFVED--PHQVVKAGDIVKVKVMEVDLQRKRIALTMRLDEQPG 725
>gi|385851102|ref|YP_005897617.1| 30S ribosomal protein S1 [Neisseria meningitidis M04-240196]
gi|416213200|ref|ZP_11622184.1| ribosomal protein S1 [Neisseria meningitidis M01-240013]
gi|421538252|ref|ZP_15984429.1| ribosomal protein S1 [Neisseria meningitidis 93003]
gi|421542605|ref|ZP_15988712.1| ribosomal protein S1 [Neisseria meningitidis NM255]
gi|421550798|ref|ZP_15996799.1| ribosomal protein S1 [Neisseria meningitidis 69166]
gi|421563503|ref|ZP_16009322.1| ribosomal protein S1 [Neisseria meningitidis NM2795]
gi|433471515|ref|ZP_20428901.1| ribosomal protein S1 [Neisseria meningitidis 68094]
gi|433477748|ref|ZP_20435068.1| ribosomal protein S1 [Neisseria meningitidis 70012]
gi|433522015|ref|ZP_20478706.1| ribosomal protein S1 [Neisseria meningitidis 61103]
gi|433526208|ref|ZP_20482838.1| ribosomal protein S1 [Neisseria meningitidis 69096]
gi|433539083|ref|ZP_20495559.1| ribosomal protein S1 [Neisseria meningitidis 70030]
gi|325144558|gb|EGC66857.1| ribosomal protein S1 [Neisseria meningitidis M01-240013]
gi|325205925|gb|ADZ01378.1| ribosomal protein S1 [Neisseria meningitidis M04-240196]
gi|402317071|gb|EJU52610.1| ribosomal protein S1 [Neisseria meningitidis 93003]
gi|402317435|gb|EJU52973.1| ribosomal protein S1 [Neisseria meningitidis NM255]
gi|402329335|gb|EJU64696.1| ribosomal protein S1 [Neisseria meningitidis 69166]
gi|402341199|gb|EJU76386.1| ribosomal protein S1 [Neisseria meningitidis NM2795]
gi|432208367|gb|ELK64345.1| ribosomal protein S1 [Neisseria meningitidis 68094]
gi|432215413|gb|ELK71302.1| ribosomal protein S1 [Neisseria meningitidis 70012]
gi|432259832|gb|ELL15102.1| ribosomal protein S1 [Neisseria meningitidis 61103]
gi|432260972|gb|ELL16229.1| ribosomal protein S1 [Neisseria meningitidis 69096]
gi|432273445|gb|ELL28543.1| ribosomal protein S1 [Neisseria meningitidis 70030]
Length = 561
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 98/193 (50%), Gaps = 33/193 (17%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E+L G+ G V++I +GAF+D G DGL+H++ L+ VK ++ VGQEV+ ++
Sbjct: 188 ENLQEGSVIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKV 246
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
++ + + R+SL M+ Q + SG TRR + +
Sbjct: 247 LKFDQDKQRVSLGMK---------QLGEDPWSG----LTRR----------------YPQ 277
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G L G V NLT GAF+ + +G EG + S E D N+ +Q+G EV V +L I
Sbjct: 278 GTRLFGKVSNLTDYGAFVEIEQGIEGLVHVS-EMDWTNKNVHPSKVVQLGDEVEVMILEI 336
Query: 323 --SRGQVTLTMKK 333
SR +++L MK+
Sbjct: 337 DESRRRISLGMKQ 349
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 46/197 (23%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS-----DNFVKDVGSIVSVGQEVKVRL 202
G +G V+SI FG F+ DGLVH+S LS + V+ G+EV+ +
Sbjct: 365 GDKISGAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKK----GEEVEAVV 420
Query: 203 IEANAETGRISLTMR--ESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKF 260
+ + E RISL ++ E D D
Sbjct: 421 LAIDVEKERISLGIKQLEGDPFGNFISVND------------------------------ 450
Query: 261 VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVL 320
KG ++G+VK++ GA I+L + EG+LP SE + D ++ + L+ G EV ++
Sbjct: 451 -KGSLVKGSVKSVDAKGAVIALSDEVEGYLPASEFAADRVEDLT--TKLKEGDEVEAVIV 507
Query: 321 RISRGQ--VTLTMKKED 335
+ R + L++K +D
Sbjct: 508 TVDRKNRSIKLSVKAKD 524
>gi|308178439|ref|YP_003917845.1| transcriptional accessory protein [Arthrobacter arilaitensis Re117]
gi|307745902|emb|CBT76874.1| putative transcriptional accessory protein [Arthrobacter
arilaitensis Re117]
Length = 809
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 65/110 (59%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+D++PG G V ++ FGAF+D G DGL+HVS +S+ F+ D +VS GQ VKV++
Sbjct: 662 KDVMPGMIMEGTVSNVAAFGAFVDLGVHQDGLIHVSAMSNKFISDPREMVSSGQIVKVKV 721
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKR 252
+E + RISLT+R D++ + + G++ +++ GQKR
Sbjct: 722 LEVDTVRKRISLTLRLDDELPAAGAEARNSGPGERKGPGAGRSARSGQKR 771
>gi|307729263|ref|YP_003906487.1| Tex-like protein [Burkholderia sp. CCGE1003]
gi|307583798|gb|ADN57196.1| Tex-like protein protein-like protein [Burkholderia sp. CCGE1003]
Length = 781
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 51/82 (62%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAFID G DGLVHVS +S F+KD +V GQ VKV
Sbjct: 649 KVSDLTPGMVLEGVVTNVAAFGAFIDVGVHQDGLVHVSAMSTKFIKDPHEVVKAGQIVKV 708
Query: 201 RLIEANAETGRISLTMRESDDI 222
+++E + + RI+LTMR D+
Sbjct: 709 KVLEVDVKRQRIALTMRLDDEF 730
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 15/115 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E +T F +G + LEG V N+ GAFI + +
Sbjct: 620 VRDILLELEKPGRDPRPEFRTATFREGVEKVSDLTPGMVLEGVVTNVAAFGAFIDVGVHQ 679
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKEDDVGS 339
+G + S S + ++ GQ V V+VL + R ++ LTM+ +D+ G+
Sbjct: 680 DGLVHVSAMSTKFIKDPH--EVVKAGQIVKVKVLEVDVKRQRIALTMRLDDEFGA 732
>gi|219848025|ref|YP_002462458.1| RNA binding S1 domain-containing protein [Chloroflexus aggregans
DSM 9485]
gi|219542284|gb|ACL24022.1| RNA binding S1 domain protein [Chloroflexus aggregans DSM 9485]
Length = 397
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 103/217 (47%), Gaps = 35/217 (16%)
Query: 122 TLAESRRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS 181
L+E ++ RK++ + E L PG GKV + FGAFID G DGL H+S LS
Sbjct: 189 VLSERAATQEWRKAQKHRLLTE-LQPGDVLVGKVNQLTNFGAFIDLGG-ADGLAHISELS 246
Query: 182 DNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTT 241
V ++ GQEVKV ++E + E RI L++R+ D
Sbjct: 247 WQRVNHPREVLQPGQEVKVVVVEIDRERERIGLSIRQLQD-------------------- 286
Query: 242 RRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFA 301
P + D+ ++ GQ + G V N+T GAF+ + E EG + SE + D A
Sbjct: 287 -----NPWETIDQ----RYTLGQLVTGPVTNVTPFGAFVQVEEAVEGLIHASELTADPQA 337
Query: 302 NMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDD 336
LQ GQ V+ RV+ + R ++ L++++ +D
Sbjct: 338 QPR--DVLQPGQIVTARVISLDRQRQRMGLSLRRIND 372
>gi|375106331|ref|ZP_09752592.1| transcriptional accessory protein [Burkholderiales bacterium
JOSHI_001]
gi|374667062|gb|EHR71847.1| transcriptional accessory protein [Burkholderiales bacterium
JOSHI_001]
Length = 780
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 62/109 (56%), Gaps = 3/109 (2%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG T G V ++ FGAF+D G DGLVHVS+LS FV D +V G VKV++
Sbjct: 653 KDLQPGMTLQGTVSNVAAFGAFVDLGVHQDGLVHVSQLSSKFVNDAREVVKTGAIVKVKV 712
Query: 203 IEANAETGRISLTMRESDDISKLQQQK---DATASGDKVRTTRRSTSKP 248
+E + GRISLTM+ + K +K + +G R +R T +P
Sbjct: 713 LEVDLARGRISLTMKLDAPVGKPGGEKADNNFRPAGRDQRAPQRRTPEP 761
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G L+GTV N+ GAF+ L ++G + S+ S F N ++ G V V+VL +
Sbjct: 658 GMTLQGTVSNVAAFGAFVDLGVHQDGLVHVSQLSSK-FVN-DAREVVKTGAIVKVKVLEV 715
Query: 323 --SRGQVTLTMKKEDDVG 338
+RG+++LTMK + VG
Sbjct: 716 DLARGRISLTMKLDAPVG 733
>gi|344167738|emb|CCA79979.1| transcriptional accessory protein [blood disease bacterium R229]
Length = 779
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 63/108 (58%), Gaps = 2/108 (1%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAFID G DGLVHVS LS FV+D +V GQ VKV++
Sbjct: 659 KDLQPGMVLEGVVTNVAAFGAFIDIGVHQDGLVHVSALSTKFVRDPHEVVKPGQIVKVKV 718
Query: 203 IEANAETGRISLTMRESDDISKLQQQK--DATASGDKVRTTRRSTSKP 248
+E + + RI LTMR +D+ ++ + D A G++ +R +P
Sbjct: 719 MEVDVKRNRIGLTMRLADEPGQVPARSGGDRPAGGNRNGGQQRRAPEP 766
>gi|152981068|ref|YP_001354953.1| Tex transcriptional accessory protein [Janthinobacterium sp.
Marseille]
gi|151281145|gb|ABR89555.1| Tex transcriptional accessory protein [Janthinobacterium sp.
Marseille]
Length = 782
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 51/77 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL P G V ++ FGAF+D G DGLVH+S LS+ FVKD ++V GQ VKV+++
Sbjct: 659 DLRPDMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNTFVKDPHTVVKAGQVVKVKVL 718
Query: 204 EANAETGRISLTMRESD 220
E + + RI+LTMR SD
Sbjct: 719 EVDEKRKRIALTMRLSD 735
>gi|423335839|ref|ZP_17313610.1| transcription accessory protein [Lactobacillus reuteri ATCC 53608]
gi|337729062|emb|CCC04185.1| transcription accessory protein [Lactobacillus reuteri ATCC 53608]
Length = 725
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 84/163 (51%), Gaps = 15/163 (9%)
Query: 69 HKSALHIISATGINVAVEESDSPAADDDSAGASDIPSDVETSESSSIKSEASPTLAESRR 128
++ A II A GINV +E +P+ADD DV+ + +E + S +
Sbjct: 568 YQVAEKIIQAAGINV--DELGTPSADDKLKKI-----DVKQFTDDQVGTETVTDIISSLQ 620
Query: 129 S--RTARKSEMPPVKN------EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRL 180
R R S P+ EDL PG G VR++ FGAF+D G DGLVHVS++
Sbjct: 621 KPGRDLRDSMPAPLLRHDVMTIEDLKPGMKLQGTVRNVVDFGAFVDIGVKHDGLVHVSKM 680
Query: 181 SDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDIS 223
S F++D ++V+VG V V + + + + RI LTM E + ++
Sbjct: 681 SKQFIRDPRAMVAVGDIVDVWIDDVDLKRQRIQLTMLEPETVT 723
>gi|149190642|ref|ZP_01868910.1| hypothetical protein VSAK1_13448 [Vibrio shilonii AK1]
gi|148835525|gb|EDL52494.1| hypothetical protein VSAK1_13448 [Vibrio shilonii AK1]
Length = 773
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 61/112 (54%), Gaps = 12/112 (10%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAF+D G DGLVH+S L+D FV D +V G VKV
Sbjct: 644 KISDLEPGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDKFVADPREVVKAGDIVKV 703
Query: 201 RLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKR 252
+++E +A RI L+MR +D+ G RT+R S+ KP + R
Sbjct: 704 KVMEVDAARKRIGLSMRLNDE------------PGQDNRTSRSSSQKPREPR 743
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 15/111 (13%)
Query: 243 RSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLP 291
R KPG+ R E KT F +G + LEG V N+ GAF+ + ++G +
Sbjct: 620 RELDKPGRDPRPEFKTATFAEGVNKISDLEPGMVLEGVVSNVANFGAFVDIGVHQDGLVH 679
Query: 292 TSEESDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDDVGSN 340
S +D A+ ++ G V V+V+ + +R ++ L+M+ D+ G +
Sbjct: 680 ISALTDKFVADPR--EVVKAGDIVKVKVMEVDAARKRIGLSMRLNDEPGQD 728
>gi|148543523|ref|YP_001270893.1| RNA-binding S1 domain-containing protein [Lactobacillus reuteri DSM
20016]
gi|148530557|gb|ABQ82556.1| RNA binding S1 domain protein [Lactobacillus reuteri DSM 20016]
Length = 726
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 84/163 (51%), Gaps = 15/163 (9%)
Query: 69 HKSALHIISATGINVAVEESDSPAADDDSAGASDIPSDVETSESSSIKSEASPTLAESRR 128
++ A II A GINV +E +P+ADD DV+ + +E + S +
Sbjct: 569 YQVAEKIIQAAGINV--DELGTPSADDKLKKI-----DVKQFTDDQVGTETVTDIISSLQ 621
Query: 129 S--RTARKSEMPPVKN------EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRL 180
R R S P+ EDL PG G VR++ FGAF+D G DGLVHVS++
Sbjct: 622 KPGRDLRDSMPAPLLRHDVMTIEDLKPGMKLQGTVRNVVDFGAFVDIGVKHDGLVHVSKM 681
Query: 181 SDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDIS 223
S F++D ++V+VG V V + + + + RI LTM E + ++
Sbjct: 682 SKQFIRDPRAMVAVGDIVDVWIDDVDLKRQRIQLTMLEPETVT 724
>gi|421544595|ref|ZP_15990671.1| ribosomal protein S1 [Neisseria meningitidis NM140]
gi|421546710|ref|ZP_15992755.1| ribosomal protein S1 [Neisseria meningitidis NM183]
gi|421548962|ref|ZP_15994986.1| ribosomal protein S1 [Neisseria meningitidis NM2781]
gi|421552913|ref|ZP_15998885.1| ribosomal protein S1 [Neisseria meningitidis NM576]
gi|421561372|ref|ZP_16007220.1| ribosomal protein S1 [Neisseria meningitidis NM2657]
gi|402322955|gb|EJU58405.1| ribosomal protein S1 [Neisseria meningitidis NM183]
gi|402323786|gb|EJU59228.1| ribosomal protein S1 [Neisseria meningitidis NM140]
gi|402325641|gb|EJU61050.1| ribosomal protein S1 [Neisseria meningitidis NM2781]
gi|402330092|gb|EJU65441.1| ribosomal protein S1 [Neisseria meningitidis NM576]
gi|402338835|gb|EJU74065.1| ribosomal protein S1 [Neisseria meningitidis NM2657]
Length = 561
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 98/193 (50%), Gaps = 33/193 (17%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E+L G+ G V++I +GAF+D G DGL+H++ L+ VK ++ VGQEV+ ++
Sbjct: 188 ENLQEGSVIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKV 246
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
++ + + R+SL M+ Q + SG TRR + +
Sbjct: 247 LKFDQDKQRVSLGMK---------QLGEDPWSG----LTRR----------------YPQ 277
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G L G V NLT GAF+ + +G EG + S E D N+ +Q+G EV V +L I
Sbjct: 278 GTRLFGKVSNLTDYGAFVEIEQGIEGLVHVS-EMDWTNKNVHPSKVVQLGDEVEVMILEI 336
Query: 323 --SRGQVTLTMKK 333
SR +++L MK+
Sbjct: 337 DESRRRISLGMKQ 349
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 46/197 (23%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS-----DNFVKDVGSIVSVGQEVKVRL 202
G +G V+SI FG F+ DGLVH+S LS + V+ G+EV+ +
Sbjct: 365 GDKISGAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKK----GEEVEAVV 420
Query: 203 IEANAETGRISLTMR--ESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKF 260
+ + E RISL ++ E D D
Sbjct: 421 LAIDVEKERISLGIKQLEGDPFGNFISVND------------------------------ 450
Query: 261 VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVL 320
KG ++GTVK++ GA ++L + EG+LP SE + D ++ + L+ G EV ++
Sbjct: 451 -KGSLVKGTVKSVDAKGAVVALSDEVEGYLPASEFAADRVEDLT--TKLKEGDEVEAVIV 507
Query: 321 RISRGQ--VTLTMKKED 335
+ R + L++K +D
Sbjct: 508 TVDRKNRSIKLSVKAKD 524
>gi|332525945|ref|ZP_08402086.1| putative transcription accessory protein [Rubrivivax
benzoatilyticus JA2]
gi|332109496|gb|EGJ10419.1| putative transcription accessory protein [Rubrivivax
benzoatilyticus JA2]
Length = 779
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 49/75 (65%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVHVS+LS+ FV D +V GQ VKVR+
Sbjct: 652 KDLQPGMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSNKFVNDAREVVKTGQTVKVRV 711
Query: 203 IEANAETGRISLTMR 217
+E + RISLTM+
Sbjct: 712 LEVDLARKRISLTMK 726
Score = 43.1 bits (100), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G LEGTV N+ + GAF+ L ++G + S+ S+ F N ++ GQ V VRVL +
Sbjct: 657 GMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSNK-FVN-DAREVVKTGQTVKVRVLEV 714
Query: 323 --SRGQVTLTMK 332
+R +++LTMK
Sbjct: 715 DLARKRISLTMK 726
>gi|416170622|ref|ZP_11608374.1| ribosomal protein S1 [Neisseria meningitidis OX99.30304]
gi|416182807|ref|ZP_11612243.1| ribosomal protein S1 [Neisseria meningitidis M13399]
gi|325130335|gb|EGC53101.1| ribosomal protein S1 [Neisseria meningitidis OX99.30304]
gi|325134457|gb|EGC57102.1| ribosomal protein S1 [Neisseria meningitidis M13399]
Length = 559
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 98/193 (50%), Gaps = 33/193 (17%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E+L G+ G V++I +GAF+D G DGL+H++ L+ VK ++ VGQEV+ ++
Sbjct: 186 ENLQEGSVIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKV 244
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
++ + + R+SL M+ Q + SG TRR + +
Sbjct: 245 LKFDQDKQRVSLGMK---------QLGEDPWSG----LTRR----------------YPQ 275
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G L G V NLT GAF+ + +G EG + S E D N+ +Q+G EV V +L I
Sbjct: 276 GTRLFGKVSNLTDYGAFVEIEQGIEGLVHVS-EMDWTNKNVHPSKVVQLGDEVEVMILEI 334
Query: 323 --SRGQVTLTMKK 333
SR +++L MK+
Sbjct: 335 DESRRRISLGMKQ 347
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 46/197 (23%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS-----DNFVKDVGSIVSVGQEVKVRL 202
G +G V+SI FG F+ DGLVH+S LS + V+ G+EV+ +
Sbjct: 363 GDKISGAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKK----GEEVEAVV 418
Query: 203 IEANAETGRISLTMR--ESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKF 260
+ + E RISL ++ E D D
Sbjct: 419 LAIDVEKERISLGIKQLEGDPFGNFISVND------------------------------ 448
Query: 261 VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVL 320
KG ++G+VK++ GA I+L + EG+LP SE + D ++ + L+ G EV ++
Sbjct: 449 -KGSLVKGSVKSVDAKGAVIALSDEVEGYLPASEFAADRVEDLT--TKLKEGDEVEAVIV 505
Query: 321 RISRGQ--VTLTMKKED 335
+ R + L++K +D
Sbjct: 506 TVDRKNRSIKLSVKAKD 522
>gi|225166329|ref|ZP_03728014.1| RNA binding S1 domain protein [Diplosphaera colitermitum TAV2]
gi|224799427|gb|EEG17971.1| RNA binding S1 domain protein [Diplosphaera colitermitum TAV2]
Length = 788
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 52/82 (63%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K EDL PG G V ++ FGAF+D G DGLVHVS+LSD FVKD +V GQ+V+
Sbjct: 679 KPEDLKPGMKLPGIVTNVTAFGAFVDVGVHQDGLVHVSQLSDTFVKDASEVVKPGQKVRA 738
Query: 201 RLIEANAETGRISLTMRESDDI 222
+IE + RI+L++R + I
Sbjct: 739 TVIEVDLARNRIALSLRTNPQI 760
>gi|158337244|ref|YP_001518419.1| S1 RNA-binding domain-containing protein [Acaryochloris marina
MBIC11017]
gi|158307485|gb|ABW29102.1| S1 RNA binding domain protein [Acaryochloris marina MBIC11017]
Length = 720
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL P G V ++ FGAF+D G DGLVH+S+++D FVKD IV VGQ VKVR++
Sbjct: 641 DLKPEMELEGIVTNVTNFGAFVDVGVHQDGLVHISQMADQFVKDPKQIVKVGQVVKVRVL 700
Query: 204 EANAETGRISLTMR 217
E N + RI L+MR
Sbjct: 701 EVNQKLKRIGLSMR 714
>gi|399887145|ref|ZP_10773022.1| S1 RNA-binding domain-containing protein [Clostridium arbusti
SL206]
Length = 718
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 57/92 (61%), Gaps = 7/92 (7%)
Query: 134 KSEMP-PVKNEDLI------PGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVK 186
+ EMP PV +I P TG VR++ FGAF+D G DGLVH+S+LSD FVK
Sbjct: 627 REEMPKPVLKTGIIDITQLKPDMILTGTVRNVADFGAFVDIGVHQDGLVHISQLSDKFVK 686
Query: 187 DVGSIVSVGQEVKVRLIEANAETGRISLTMRE 218
IV VG V+VR++E + + RISLTM++
Sbjct: 687 HPLDIVKVGDIVEVRVLEIDEKRNRISLTMKK 718
Score = 44.3 bits (103), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP K + T+ L GTV+N+ GAF+ + ++G + S+ SD
Sbjct: 624 RDPREEMPKPVLKTGIIDITQLKPDMILTGTVRNVADFGAFVDIGVHQDGLVHISQLSDK 683
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKK 333
+ + ++VG V VRVL I R +++LTMKK
Sbjct: 684 FVKHPL--DIVKVGDIVEVRVLEIDEKRNRISLTMKK 718
>gi|383758303|ref|YP_005437288.1| RNA-binding S1 domain-containing protein [Rubrivivax gelatinosus
IL144]
gi|381378972|dbj|BAL95789.1| RNA-binding S1 domain-containing protein [Rubrivivax gelatinosus
IL144]
Length = 781
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 49/75 (65%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVHVS+LS+ FV D +V GQ VKVR+
Sbjct: 654 KDLQPGMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSNKFVNDAREVVKTGQTVKVRV 713
Query: 203 IEANAETGRISLTMR 217
+E + RISLTM+
Sbjct: 714 LEVDLARKRISLTMK 728
Score = 43.1 bits (100), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G LEGTV N+ + GAF+ L ++G + S+ S+ F N ++ GQ V VRVL +
Sbjct: 659 GMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSNK-FVN-DAREVVKTGQTVKVRVLEV 716
Query: 323 --SRGQVTLTMK 332
+R +++LTMK
Sbjct: 717 DLARKRISLTMK 728
>gi|194468066|ref|ZP_03074052.1| RNA binding S1 domain protein [Lactobacillus reuteri 100-23]
gi|194452919|gb|EDX41817.1| RNA binding S1 domain protein [Lactobacillus reuteri 100-23]
Length = 725
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 84/163 (51%), Gaps = 15/163 (9%)
Query: 69 HKSALHIISATGINVAVEESDSPAADDDSAGASDIPSDVETSESSSIKSEASPTLAESRR 128
++ A II A GINV +E +P+ADD DV+ + +E + S +
Sbjct: 568 YQVAEKIIQAAGINV--DELGTPSADDKLKKI-----DVKQFTDDQVGTETVTDIISSLQ 620
Query: 129 S--RTARKSEMPPVKN------EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRL 180
R R S P+ EDL PG G VR++ FGAF+D G DGLVHVS++
Sbjct: 621 KPGRDLRDSMPAPLLRHDVMTIEDLKPGMKLQGTVRNVVDFGAFVDIGVKHDGLVHVSKM 680
Query: 181 SDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDIS 223
S F++D ++V+VG V V + + + + RI LTM E + ++
Sbjct: 681 SKQFIRDPRAMVAVGDIVDVWIDDVDLKRQRIQLTMLELETVT 723
>gi|456062949|ref|YP_007501919.1| RNA-binding S1 domain-containing protein [beta proteobacterium CB]
gi|455440246|gb|AGG33184.1| RNA-binding S1 domain-containing protein [beta proteobacterium CB]
Length = 786
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 65/114 (57%), Gaps = 9/114 (7%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL G V ++ FGAF+D G DGLVH+S L++ FVKD ++V GQ VKV
Sbjct: 656 KISDLKTDMILEGVVTNVAAFGAFVDIGVHQDGLVHISALANTFVKDPHTVVKAGQVVKV 715
Query: 201 RLIEANAETGRISLTMRESDDISKLQQQKDATASGDKV--RTTRRSTSKPGQKR 252
+++E + + RI+LTMR SD+ K TA G K R+ R S + +KR
Sbjct: 716 KVLEVDEKRKRIALTMRLSDEAPK-------TAPGAKTEQRSNRPSAPRSSEKR 762
>gi|17546342|ref|NP_519744.1| transcription accessory protein [Ralstonia solanacearum GMI1000]
gi|17428639|emb|CAD15325.1| conserved hypothetical protein [Ralstonia solanacearum GMI1000]
Length = 779
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 63/108 (58%), Gaps = 2/108 (1%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAFID G DGLVHVS LS FV+D +V GQ VKV++
Sbjct: 659 KDLQPGMVLEGVVTNVAAFGAFIDIGVHQDGLVHVSALSTKFVRDPHEVVKPGQIVKVKV 718
Query: 203 IEANAETGRISLTMRESDDISKLQQQK--DATASGDKVRTTRRSTSKP 248
+E + + RI LTMR +D+ ++ + D A G++ +R +P
Sbjct: 719 MEVDVKRNRIGLTMRLTDEPGQVPARSGGDRPAGGNRNGGQQRRAPEP 766
>gi|427400099|ref|ZP_18891337.1| competence protein ComEA helix-hairpin-helix repeat region
[Massilia timonae CCUG 45783]
gi|425720839|gb|EKU83754.1| competence protein ComEA helix-hairpin-helix repeat region
[Massilia timonae CCUG 45783]
Length = 784
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 64/109 (58%), Gaps = 4/109 (3%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL P G V ++ FGAF+D G DGLVH+S LS+ FVKD ++V GQ VKV+++
Sbjct: 660 DLRPDMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNTFVKDPHTVVKAGQVVKVKVL 719
Query: 204 EANAETGRISLTMRESDDI----SKLQQQKDATASGDKVRTTRRSTSKP 248
E + + RI+LTMR +D S+ +Q+ D T + + R+ S P
Sbjct: 720 EVDPKRKRIALTMRLADSAPQAGSRPEQRGDRTDAKRVAQHQRQERSAP 768
>gi|339058337|ref|ZP_08648813.1| Transcription accessory protein (S1 RNA-binding domain) [gamma
proteobacterium IMCC2047]
gi|330720456|gb|EGG98764.1| Transcription accessory protein (S1 RNA-binding domain) [gamma
proteobacterium IMCC2047]
Length = 561
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 60/109 (55%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL P G + ++ FGAF+D G DGLVH+S L+D FVKD S+V G VKV++
Sbjct: 433 KDLQPDMVLEGTITNVTNFGAFVDIGVHQDGLVHISALADKFVKDPHSVVKAGDIVKVKV 492
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQK 251
+ + E RI LTMR +D + Q Q + T+ +R T QK
Sbjct: 493 MAVDVERKRIGLTMRMADSAADQQGQGEPTSRKSGANKKQRKTVANKQK 541
>gi|146313452|ref|YP_001178526.1| RNA-binding S1 domain-containing protein [Enterobacter sp. 638]
gi|145320328|gb|ABP62475.1| RNA binding S1 domain protein [Enterobacter sp. 638]
Length = 776
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 3/110 (2%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL+PG G V ++ FGAF+D G DGLVH+S L+D FV+D ++V G VKV++
Sbjct: 646 KDLLPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVQDPHTVVKAGDIVKVKV 705
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKR 252
+E + RI+LTMR + + ++ + R R +KP Q R
Sbjct: 706 LEVDMPRKRIALTMRLDEQPGETNARRGNSGGA---REQARPAAKPAQPR 752
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 15/105 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT KF +G + LEG V N+T GAF+ + ++G + S
Sbjct: 624 KPGRDPRPEFKTAKFAEGVETMKDLLPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSL 683
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKKEDDVG 338
+D + + ++ G V V+VL + R ++ LTM+ ++ G
Sbjct: 684 ADKFVQD--PHTVVKAGDIVKVKVLEVDMPRKRIALTMRLDEQPG 726
>gi|113867443|ref|YP_725932.1| transcriptional accessory protein [Ralstonia eutropha H16]
gi|113526219|emb|CAJ92564.1| transcriptional accessory protein [Ralstonia eutropha H16]
Length = 784
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 50/79 (63%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S LS FVKD +V GQ VKV++
Sbjct: 658 KDLQPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHISALSSKFVKDAHEVVKAGQIVKVKV 717
Query: 203 IEANAETGRISLTMRESDD 221
+E + + RI L+MR D+
Sbjct: 718 MEVDVKRNRIGLSMRLDDE 736
>gi|359778103|ref|ZP_09281374.1| putative transcription accessory protein [Arthrobacter globiformis
NBRC 12137]
gi|359304566|dbj|GAB15203.1| putative transcription accessory protein [Arthrobacter globiformis
NBRC 12137]
Length = 890
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 52/81 (64%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAF+D G DGLVHVS L++ FV D +V GQ V+V
Sbjct: 708 KISDLKPGMVLEGTVTNVAAFGAFVDVGVHQDGLVHVSALANRFVADPREVVKSGQVVRV 767
Query: 201 RLIEANAETGRISLTMRESDD 221
+++EA+ E RISLT+R D+
Sbjct: 768 KVLEADPERKRISLTLRLDDE 788
>gi|56459392|ref|YP_154673.1| transcriptional accessory protein [Idiomarina loihiensis L2TR]
gi|56178402|gb|AAV81124.1| Transcriptional accessory protein [Idiomarina loihiensis L2TR]
Length = 776
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 50/81 (61%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAFID G DGLVH+S L+D FV D +V G VKV
Sbjct: 644 KVSDLKPGMLLEGVVTNVANFGAFIDVGVHQDGLVHISALADKFVSDPREVVKAGDIVKV 703
Query: 201 RLIEANAETGRISLTMRESDD 221
+++E + E RI LTMR SD+
Sbjct: 704 KVLEVDIERKRIGLTMRLSDE 724
>gi|158321498|ref|YP_001514005.1| RNA-binding S1 domain-containing protein [Alkaliphilus oremlandii
OhILAs]
gi|158141697|gb|ABW20009.1| RNA binding S1 domain protein [Alkaliphilus oremlandii OhILAs]
Length = 718
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 58/92 (63%), Gaps = 7/92 (7%)
Query: 134 KSEMPP-------VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVK 186
+ EMP +K EDL G VR++ FGAF+D G DGLVHVS LS+ FVK
Sbjct: 625 REEMPKPLFKSDVLKMEDLKLDMIMPGTVRNVVDFGAFVDIGVKQDGLVHVSELSNRFVK 684
Query: 187 DVGSIVSVGQEVKVRLIEANAETGRISLTMRE 218
+ +VSVG EVKV++I + E G+ISL++++
Sbjct: 685 NAMDVVSVGDEVKVKIIGLDIERGKISLSIKQ 716
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 5/135 (3%)
Query: 201 RLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKF 260
RL E +A G L E I +L Q R R KP K D +K
Sbjct: 585 RLKEIDAAIGNYKLVAEELG-IGELTLQDIVQELKKPGRDPREEMPKPLFKSDVLKMEDL 643
Query: 261 VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRV- 319
+ GTV+N+ GAF+ + ++G + SE S+ N M S VG EV V++
Sbjct: 644 KLDMIMPGTVRNVVDFGAFVDIGVKQDGLVHVSELSNRFVKNAMDVVS--VGDEVKVKII 701
Query: 320 -LRISRGQVTLTMKK 333
L I RG+++L++K+
Sbjct: 702 GLDIERGKISLSIKQ 716
>gi|392374190|ref|YP_003206023.1| transcriptional accessory protein containing S1 RNA-binding domain
[Candidatus Methylomirabilis oxyfera]
gi|258591883|emb|CBE68186.1| Putative transcriptional accessory protein containing S1
RNA-binding domain [Candidatus Methylomirabilis oxyfera]
Length = 774
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 52/80 (65%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL G G V ++ FGAF+D G DGLVHVS L+D FVKD SIV G VKV+++
Sbjct: 653 DLESGMMLEGIVTNVTNFGAFVDIGVHQDGLVHVSALADKFVKDPHSIVKAGDVVKVKVL 712
Query: 204 EANAETGRISLTMRESDDIS 223
E + RI+LTMR SD+++
Sbjct: 713 EVDIARKRIALTMRLSDEVT 732
Score = 43.1 bits (100), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 15/108 (13%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT F +G + LEG V N+T GAF+ + ++G + S
Sbjct: 630 KPGRDPRPEFKTALFREGVESLMDLESGMMLEGIVTNVTNFGAFVDIGVHQDGLVHVSAL 689
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKEDDVGSNL 341
+D + S ++ G V V+VL I+R ++ LTM+ D+V + +
Sbjct: 690 ADKFVKD--PHSIVKAGDVVKVKVLEVDIARKRIALTMRLSDEVTARI 735
>gi|251787890|ref|YP_003002611.1| RNA binding S1 domain-containing protein [Dickeya zeae Ech1591]
gi|247536511|gb|ACT05132.1| RNA binding S1 domain protein [Dickeya zeae Ech1591]
Length = 780
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LSD FV+D +V G VKV+++
Sbjct: 646 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHQVVKAGDIVKVKVL 705
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 706 EVDLQRKRIALTMR 719
>gi|261377757|ref|ZP_05982330.1| ribosomal protein S1 [Neisseria cinerea ATCC 14685]
gi|269146043|gb|EEZ72461.1| ribosomal protein S1 [Neisseria cinerea ATCC 14685]
Length = 561
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 98/193 (50%), Gaps = 33/193 (17%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E+L G+ G V++I +GAF+D G DGL+H++ L+ VK ++ VGQEV+ ++
Sbjct: 188 ENLQEGSVIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKV 246
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
++ + + R+SL M+ Q + SG TRR + +
Sbjct: 247 LKFDQDKQRVSLGMK---------QLGEDPWSG----LTRR----------------YPQ 277
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G L G V NLT GAF+ + +G EG + S E D N+ +Q+G EV V +L I
Sbjct: 278 GTRLFGKVSNLTDYGAFVEIEQGIEGLVHVS-EMDWTNKNVHPSKVVQLGDEVEVMILEI 336
Query: 323 --SRGQVTLTMKK 333
SR +++L MK+
Sbjct: 337 DESRRRISLGMKQ 349
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 85/197 (43%), Gaps = 46/197 (23%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS-----DNFVKDVGSIVSVGQEVKVRL 202
G +G V+SI FG F+ DGLVH+S LS + V+ G+EV+ +
Sbjct: 365 GDKISGAVKSITDFGIFVGLPGGIDGLVHLSDLSWTEAGEEAVRKYKK----GEEVEAVV 420
Query: 203 IEANAETGRISLTMR--ESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKF 260
+ + E RISL ++ E D D
Sbjct: 421 LAIDVEKERISLGIKQLEGDPFGNFISVND------------------------------ 450
Query: 261 VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVL 320
KG ++G+VK++ GA +SL E EG+LP SE + D ++ + L+ G EV ++
Sbjct: 451 -KGSLVKGSVKSVDAKGAVVSLSEEVEGYLPASEFAADRVEDLT--TKLKEGDEVEAVIV 507
Query: 321 RISRGQ--VTLTMKKED 335
+ R + L++K +D
Sbjct: 508 TVDRKNRSIRLSVKAKD 524
>gi|54307403|ref|YP_128423.1| hypothetical protein PBPRA0182 [Photobacterium profundum SS9]
gi|46911823|emb|CAG18621.1| conserved hypothetical protein [Photobacterium profundum SS9]
Length = 792
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 52/79 (65%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DLIPG G + ++ FGAF+D G DGLVH+S LSD F+ D +V G VKV++
Sbjct: 654 KDLIPGMILEGVITNVTNFGAFVDVGVHQDGLVHISALSDKFISDPREVVKAGDVVKVKV 713
Query: 203 IEANAETGRISLTMRESDD 221
+E + + RI+++MR SD+
Sbjct: 714 MEVDLQRKRIAMSMRMSDE 732
Score = 38.9 bits (89), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 15/105 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT F +G + LEG + N+T GAF+ + ++G + S
Sbjct: 632 KPGRDPRPEFKTATFAEGVNEVKDLIPGMILEGVITNVTNFGAFVDVGVHQDGLVHISAL 691
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDDVG 338
SD ++ ++ G V V+V+ + R ++ ++M+ D+ G
Sbjct: 692 SDKFISD--PREVVKAGDVVKVKVMEVDLQRKRIAMSMRMSDEPG 734
>gi|374709620|ref|ZP_09714054.1| S1 RNA-binding domain-containing protein [Sporolactobacillus
inulinus CASD]
Length = 722
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 52/77 (67%)
Query: 140 VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
+K EDL PG G VR++ FGAF+D G DGLVH+S+L++ FV+ +V VG+ V
Sbjct: 637 LKMEDLRPGMRLEGTVRNVVDFGAFVDIGVKQDGLVHLSKLAERFVRHPLDVVRVGEIVT 696
Query: 200 VRLIEANAETGRISLTM 216
V + + +AE GRISLTM
Sbjct: 697 VWVEQVDAEKGRISLTM 713
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP K D +K G LEGTV+N+ GAF+ + ++G + S+ ++
Sbjct: 621 RDPRDDLKKPLLKTDVLKMEDLRPGMRLEGTVRNVVDFGAFVDIGVKQDGLVHLSKLAER 680
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTM 331
+ + ++VG+ V+V V ++ +G+++LTM
Sbjct: 681 FVRHPL--DVVRVGEIVTVWVEQVDAEKGRISLTM 713
>gi|416203979|ref|ZP_11620169.1| ribosomal protein S1, partial [Neisseria meningitidis 961-5945]
gi|325142504|gb|EGC64906.1| ribosomal protein S1 [Neisseria meningitidis 961-5945]
Length = 416
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 97/193 (50%), Gaps = 33/193 (17%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E+L G+ G V++I +GAF+D G DGL+H++ L+ VK ++ VGQEV+ ++
Sbjct: 109 ENLQEGSVIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKV 167
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
++ + E R+SL M+ Q + SG TRR + +
Sbjct: 168 LKFDQEKQRVSLGMK---------QLGEDPWSG----LTRR----------------YPQ 198
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G L G V NLT GAF+ + +G EG + S E D N+ +Q+G EV V +L I
Sbjct: 199 GTRLFGKVSNLTDYGAFVEIEQGIEGLVHVS-EMDWTNKNVHPSKVVQLGDEVEVMILEI 257
Query: 323 SRG--QVTLTMKK 333
G +++L MK+
Sbjct: 258 DEGRRRISLGMKQ 270
Score = 42.4 bits (98), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 65/158 (41%), Gaps = 42/158 (26%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS-----DNFVKDVGSIVSVGQEVKVRL 202
G +G V+SI FG F+ DGLVH+S LS + V+ G+EV+ +
Sbjct: 286 GDKISGAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKK----GEEVEAVV 341
Query: 203 IEANAETGRISLTMR--ESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKF 260
+ + E RISL ++ E D D
Sbjct: 342 LAIDVEKERISLGIKQLEGDPFGNFISVND------------------------------ 371
Query: 261 VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
KG ++G+VK++ GA I+L + E +LP SE + D
Sbjct: 372 -KGSLVKGSVKSVDAKGAVIALSDEVESYLPASEFAAD 408
>gi|399019195|ref|ZP_10721344.1| transcriptional accessory protein [Herbaspirillum sp. CF444]
gi|398098342|gb|EJL88629.1| transcriptional accessory protein [Herbaspirillum sp. CF444]
Length = 783
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 51/77 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL P G V ++ FGAF+D G DGLVH+S LS+ FVKD ++V GQ VKV+++
Sbjct: 659 DLRPDMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNTFVKDPHTVVKAGQVVKVKVL 718
Query: 204 EANAETGRISLTMRESD 220
E + + RI+LTMR SD
Sbjct: 719 EVDEKRKRIALTMRLSD 735
>gi|389872801|ref|YP_006380220.1| transcription accessory protein [Advenella kashmirensis WT001]
gi|388538050|gb|AFK63238.1| transcription accessory protein [Advenella kashmirensis WT001]
Length = 791
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 50/79 (63%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL G G V ++ FGAF+D G DGLVH+S LSD FVKD +V VGQ VKV++
Sbjct: 665 KDLSEGMILDGVVTNVANFGAFVDIGVHQDGLVHISALSDTFVKDPRDVVRVGQTVKVKV 724
Query: 203 IEANAETGRISLTMRESDD 221
E + RI LTMR +DD
Sbjct: 725 QEVDVARNRIGLTMRLNDD 743
Score = 43.5 bits (101), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 15/105 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT F +G + L+G V N+ GAF+ + ++G + S
Sbjct: 643 KPGRDPRPEFKTVTFQEGVETIKDLSEGMILDGVVTNVANFGAFVDIGVHQDGLVHISAL 702
Query: 296 SDDGFANMMGGSSLQVGQEVSVRV--LRISRGQVTLTMKKEDDVG 338
SD + ++VGQ V V+V + ++R ++ LTM+ DD G
Sbjct: 703 SDTFVKDPR--DVVRVGQTVKVKVQEVDVARNRIGLTMRLNDDTG 745
>gi|307132915|ref|YP_003884931.1| transcriptional accessory protein [Dickeya dadantii 3937]
gi|306530444|gb|ADN00375.1| predicted transcriptional accessory protein [Dickeya dadantii 3937]
Length = 781
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LSD FV+D +V G VKV+++
Sbjct: 646 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHQVVKAGDIVKVKVL 705
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 706 EVDLQRKRIALTMR 719
>gi|73541033|ref|YP_295553.1| RNA binding S1 [Ralstonia eutropha JMP134]
gi|72118446|gb|AAZ60709.1| RNA binding S1 [Ralstonia eutropha JMP134]
Length = 802
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 50/79 (63%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S LS+ FVKD +V GQ VKV++
Sbjct: 676 KDLQPGMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNKFVKDAHEVVKAGQIVKVKV 735
Query: 203 IEANAETGRISLTMRESDD 221
+E + RI L+MR D+
Sbjct: 736 MEVDVMRNRIGLSMRLDDE 754
>gi|304317581|ref|YP_003852726.1| Tex-like protein [Thermoanaerobacterium thermosaccharolyticum DSM
571]
gi|302779083|gb|ADL69642.1| Tex-like protein protein-like protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 712
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 50/75 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E L PG G VR++ FG F+D G TDGLVH+S +S N++K +VSVG VKVR+
Sbjct: 638 EQLKPGMELMGTVRNVVDFGCFVDIGVHTDGLVHISEMSQNYIKHPLDVVSVGDIVKVRV 697
Query: 203 IEANAETGRISLTMR 217
I+ + + RISL+M+
Sbjct: 698 IDVDIDRNRISLSMK 712
Score = 42.4 bits (98), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP D M + G +L GTV+N+ G F+ + +G + SE S +
Sbjct: 619 RDPREELPKPILMSDVMTIEQLKPGMELMGTVRNVVDFGCFVDIGVHTDGLVHISEMSQN 678
Query: 299 GFANMMGGSSLQVGQEVSVRVL--RISRGQVTLTMK 332
+ + S VG V VRV+ I R +++L+MK
Sbjct: 679 YIKHPLDVVS--VGDIVKVRVIDVDIDRNRISLSMK 712
>gi|419959402|ref|ZP_14475456.1| transcriptional accessory protein [Enterobacter cloacae subsp.
cloacae GS1]
gi|388605685|gb|EIM34901.1| transcriptional accessory protein [Enterobacter cloacae subsp.
cloacae GS1]
Length = 776
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 50/74 (67%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S L+D FV+D ++V G VKV+++
Sbjct: 647 DLLPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|354725535|ref|ZP_09039750.1| putative transcriptional accessory protein [Enterobacter mori LMG
25706]
Length = 776
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 50/74 (67%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S L+D FV+D ++V G VKV+++
Sbjct: 647 DLLPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|403381781|ref|ZP_10923838.1| hypothetical protein PJC66_18316 [Paenibacillus sp. JC66]
Length = 784
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 56/95 (58%), Gaps = 7/95 (7%)
Query: 134 KSEMPP-------VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVK 186
+ E+PP +K EDL PG G VR++ FGAF+D G DGLVH+S++S F+K
Sbjct: 684 REELPPPIFRTDVLKLEDLSPGMELQGTVRNVIDFGAFVDIGVKNDGLVHISQMSSKFIK 743
Query: 187 DVGSIVSVGQEVKVRLIEANAETGRISLTMRESDD 221
+VSVG V V ++ + + GR+ LTM+ D
Sbjct: 744 HPMDVVSVGDNVTVWVLNVDVKKGRVGLTMKPPKD 778
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R P + D +K G +L+GTV+N+ GAF+ + +G + S+ S
Sbjct: 681 RDPREELPPPIFRTDVLKLEDLSPGMELQGTVRNVIDFGAFVDIGVKNDGLVHISQMSSK 740
Query: 299 GFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKEDDVGSNL 341
+ M S VG V+V VL + +G+V LTMK D GS L
Sbjct: 741 FIKHPMDVVS--VGDNVTVWVLNVDVKKGRVGLTMKPPKDSGSAL 783
>gi|398801213|ref|ZP_10560460.1| transcriptional accessory protein [Pantoea sp. GM01]
gi|398092585|gb|EJL82995.1| transcriptional accessory protein [Pantoea sp. GM01]
Length = 777
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LSD FV+D +V G VKV+++
Sbjct: 648 DLLPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKAGDIVKVKVM 707
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 708 EVDMQRKRIALTMR 721
>gi|444305152|ref|ZP_21140938.1| competence protein ComEA-like protein with helix-hairpin-helix
repeat region [Arthrobacter sp. SJCon]
gi|443482524|gb|ELT45433.1| competence protein ComEA-like protein with helix-hairpin-helix
repeat region [Arthrobacter sp. SJCon]
Length = 818
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 52/81 (64%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAF+D G DGLVHVS L++ FV D +V GQ V+V
Sbjct: 658 KISDLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSALANRFVSDPREVVKSGQVVRV 717
Query: 201 RLIEANAETGRISLTMRESDD 221
+++EA+ E RISLT+R D+
Sbjct: 718 KVLEADPERKRISLTLRLDDE 738
>gi|407776987|ref|ZP_11124258.1| RNA binding S1 [Nitratireductor pacificus pht-3B]
gi|407301152|gb|EKF20273.1| RNA binding S1 [Nitratireductor pacificus pht-3B]
Length = 776
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVHVS+L+D F+KD +V G VKV++
Sbjct: 649 KDLKPGMALEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFIKDAHEVVKAGDVVKVKV 708
Query: 203 IEANAETGRISLTMRE 218
+E + + RISL+MR+
Sbjct: 709 LEVDIKRKRISLSMRK 724
Score = 39.3 bits (90), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 15/109 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R +T F +G D LEGTV N+ GAF+ + +
Sbjct: 618 VRDIIAELDKPGRDPRPAFRTATFAEGVDDIKDLKPGMALEGTVTNVAAFGAFVDIGVHQ 677
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKK 333
+G + S+ +D + ++ G V V+VL I R +++L+M+K
Sbjct: 678 DGLVHVSQLADRFIKDAH--EVVKAGDVVKVKVLEVDIKRKRISLSMRK 724
>gi|295097017|emb|CBK86107.1| Transcriptional accessory protein [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 776
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 50/74 (67%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S L+D FV+D ++V G VKV+++
Sbjct: 647 DLLPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|126740326|ref|ZP_01756014.1| S1 RNA binding domain protein [Roseobacter sp. SK209-2-6]
gi|126718462|gb|EBA15176.1| S1 RNA binding domain protein [Roseobacter sp. SK209-2-6]
Length = 785
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 57/109 (52%), Gaps = 14/109 (12%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVHVS+L+D FVKD +V GQ VKV +
Sbjct: 645 DLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKTGQVVKVTVT 704
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKR 252
E + RI LTMR KD AS + R R KPG R
Sbjct: 705 EVDVARKRIGLTMR-----------KDGGASAREERDFR---GKPGTGR 739
>gi|386850278|ref|YP_006268291.1| transcriptional accessory protein [Actinoplanes sp. SE50/110]
gi|359837782|gb|AEV86223.1| Transcriptional accessory protein [Actinoplanes sp. SE50/110]
Length = 839
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 52/81 (64%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G+V ++ FGAF+D G DGLVHVS LS+ FV+D +V G VKV
Sbjct: 664 KIADLKPGMILEGQVTNVAAFGAFVDIGVHQDGLVHVSALSEKFVQDPREVVKSGDVVKV 723
Query: 201 RLIEANAETGRISLTMRESDD 221
R++E + RISLTMR SD+
Sbjct: 724 RVLEVDPVRKRISLTMRLSDE 744
>gi|410729106|ref|ZP_11367190.1| transcriptional accessory protein [Clostridium sp. Maddingley
MBC34-26]
gi|410596229|gb|EKQ50911.1| transcriptional accessory protein [Clostridium sp. Maddingley
MBC34-26]
Length = 725
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 58/95 (61%), Gaps = 7/95 (7%)
Query: 134 KSEMPP-------VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVK 186
+ EMP ++ +DL PG G VR++ FGAF+D G DGLVH S+L++ FVK
Sbjct: 627 REEMPKPILKTGIIELKDLKPGMVLAGTVRNVSDFGAFVDIGVHQDGLVHKSQLANRFVK 686
Query: 187 DVGSIVSVGQEVKVRLIEANAETGRISLTMRESDD 221
IV VG VKV ++E + + RISLTM++ D+
Sbjct: 687 HPLDIVKVGDIVKVAILEVDEKRKRISLTMKDIDE 721
>gi|376001340|ref|ZP_09779210.1| transcriptional accessory protein [Arthrospira sp. PCC 8005]
gi|375330169|emb|CCE14963.1| transcriptional accessory protein [Arthrospira sp. PCC 8005]
Length = 718
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 50/74 (67%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G GLVH+S+L+D FV+D IV VGQ VKV+++
Sbjct: 642 DLKPGMELEGIVTNVVNFGAFVDVGVHQYGLVHISQLADRFVEDPQQIVRVGQVVKVKVL 701
Query: 204 EANAETGRISLTMR 217
E N + RISL+MR
Sbjct: 702 EVNEKLNRISLSMR 715
Score = 39.3 bits (90), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 5/119 (4%)
Query: 217 RESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK-GQDLEGTVKNLTR 275
R D L KD A +K R+ K RD++K +K G +LEG V N+
Sbjct: 599 RYVTDTVGLPTLKDIIAELEKPGRDPRAEFKYATFRDDIKEVSDLKPGMELEGIVTNVVN 658
Query: 276 SGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISR--GQVTLTMK 332
GAF+ + + G + S+ +D + ++VGQ V V+VL ++ +++L+M+
Sbjct: 659 FGAFVDVGVHQYGLVHISQLADRFVED--PQQIVRVGQVVKVKVLEVNEKLNRISLSMR 715
>gi|300113866|ref|YP_003760441.1| Tex-like protein [Nitrosococcus watsonii C-113]
gi|299539803|gb|ADJ28120.1| Tex-like protein protein-like protein [Nitrosococcus watsonii
C-113]
Length = 786
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 58/108 (53%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG G V ++ FGAF+D G DGLVH+S L+D FVKD IVS G VKV++
Sbjct: 663 EDLKPGMILEGVVTNVTAFGAFVDVGVHQDGLVHISALADRFVKDPHEIVSAGDIVKVKV 722
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQ 250
+E + RI LTMR + K Q A K R ++ S Q
Sbjct: 723 LEIDNVRKRIGLTMRLGEMAEKQSSQLTAKEPMKKPRHSKAKLSPAAQ 770
>gi|398794682|ref|ZP_10554717.1| transcriptional accessory protein [Pantoea sp. YR343]
gi|398208353|gb|EJM95085.1| transcriptional accessory protein [Pantoea sp. YR343]
Length = 776
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LSD FV+D +V G VKV+++
Sbjct: 648 DLLPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKAGDIVKVKVM 707
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 708 EVDMQRKRIALTMR 721
>gi|119945506|ref|YP_943186.1| RNA-binding S1 domain-containing protein [Psychromonas ingrahamii
37]
gi|119864110|gb|ABM03587.1| RNA binding S1 domain protein [Psychromonas ingrahamii 37]
Length = 728
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 51/77 (66%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL G G + ++ FGAF+D G DGLVH+S+L+DNFV D +IV VGQ V V
Sbjct: 647 KISDLQEGMLLQGVISNVTNFGAFVDIGVHQDGLVHISQLADNFVSDPFAIVKVGQLVNV 706
Query: 201 RLIEANAETGRISLTMR 217
R++E + + RI+L+MR
Sbjct: 707 RVVEIDVQRKRIALSMR 723
Score = 43.1 bits (100), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 21/145 (14%)
Query: 205 ANAETGRISLTMRESDDISKL--QQQKDATASGDKVRTTRRSTSKPGQKRD---EMKTTK 259
A E ++ + SD ++ L Q D T VR + +KP KRD + +
Sbjct: 583 AAQEGVKVQQLLNNSDLLNSLDAQNYADQTFGVISVREIVKELAKP--KRDPRPDFQRVD 640
Query: 260 FVK----------GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSL 309
F K G L+G + N+T GAF+ + ++G + S+ +D+ ++ + +
Sbjct: 641 FAKNINKISDLQEGMLLQGVISNVTNFGAFVDIGVHQDGLVHISQLADNFVSDPF--AIV 698
Query: 310 QVGQEVSVRVLRI--SRGQVTLTMK 332
+VGQ V+VRV+ I R ++ L+M+
Sbjct: 699 KVGQLVNVRVVEIDVQRKRIALSMR 723
>gi|423066649|ref|ZP_17055439.1| RNA-binding S1 domain-containing protein [Arthrospira platensis C1]
gi|406711957|gb|EKD07155.1| RNA-binding S1 domain-containing protein [Arthrospira platensis C1]
Length = 760
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 50/74 (67%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G GLVH+S+L+D FV+D IV VGQ VKV+++
Sbjct: 684 DLKPGMELEGIVTNVVNFGAFVDVGVHQYGLVHISQLADRFVEDPQQIVRVGQVVKVKVL 743
Query: 204 EANAETGRISLTMR 217
E N + RISL+MR
Sbjct: 744 EVNEKLNRISLSMR 757
Score = 39.3 bits (90), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 5/119 (4%)
Query: 217 RESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK-GQDLEGTVKNLTR 275
R D L KD A +K R+ K RD++K +K G +LEG V N+
Sbjct: 641 RYVTDTVGLPTLKDIIAELEKPGRDPRAEFKYATFRDDIKEVSDLKPGMELEGIVTNVVN 700
Query: 276 SGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISR--GQVTLTMK 332
GAF+ + + G + S+ +D + ++VGQ V V+VL ++ +++L+M+
Sbjct: 701 FGAFVDVGVHQYGLVHISQLADRFVED--PQQIVRVGQVVKVKVLEVNEKLNRISLSMR 757
>gi|401678550|ref|ZP_10810510.1| YhgF like protein [Enterobacter sp. SST3]
gi|400214177|gb|EJO45103.1| YhgF like protein [Enterobacter sp. SST3]
Length = 776
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 50/74 (67%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S L+D FV+D ++V G VKV+++
Sbjct: 647 DLLPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|334125994|ref|ZP_08499977.1| YhgF like protein [Enterobacter hormaechei ATCC 49162]
gi|333386209|gb|EGK57428.1| YhgF like protein [Enterobacter hormaechei ATCC 49162]
Length = 794
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 50/74 (67%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S L+D FV+D ++V G VKV+++
Sbjct: 665 DLLPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAGDIVKVKVL 724
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 725 EVDLQRKRIALTMR 738
>gi|451817493|ref|YP_007453694.1| Tex-like protein [Clostridium saccharoperbutylacetonicum N1-4(HMT)]
gi|451783472|gb|AGF54440.1| Tex-like protein [Clostridium saccharoperbutylacetonicum N1-4(HMT)]
Length = 725
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 58/95 (61%), Gaps = 7/95 (7%)
Query: 134 KSEMPP-------VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVK 186
+ EMP V+ +DL PG G VR++ FGAF+D G DGLVH S++++ FVK
Sbjct: 627 REEMPKPILKTGIVELKDLKPGMVLAGTVRNVSDFGAFVDIGVHQDGLVHKSQMANRFVK 686
Query: 187 DVGSIVSVGQEVKVRLIEANAETGRISLTMRESDD 221
IV VG VKV ++E + + RISLTM++ D+
Sbjct: 687 HPLDIVKVGDIVKVAILEVDEKRKRISLTMKDVDE 721
>gi|372269441|ref|ZP_09505489.1| paral putative RNase R [Marinobacterium stanieri S30]
Length = 758
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 51/75 (68%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S+LSD FV D +IVS G+ V+VR+
Sbjct: 636 KDLQPGMELEGVVTNVTHFGAFVDIGVHQDGLVHISQLSDRFVSDPHTIVSSGEIVRVRV 695
Query: 203 IEANAETGRISLTMR 217
+E + RISLTM+
Sbjct: 696 LEVDETRKRISLTMK 710
Score = 42.0 bits (97), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 15/108 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKG----------QDLEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E ++ ++ +G +LEG V N+T GAF+ + +
Sbjct: 605 VRDVLSELEKPGRDPRPEFRSVQYAEGVETLKDLQPGMELEGVVTNVTHFGAFVDIGVHQ 664
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMK 332
+G + S+ SD ++ + + G+ V VRVL + +R +++LTMK
Sbjct: 665 DGLVHISQLSDRFVSDPH--TIVSSGEIVRVRVLEVDETRKRISLTMK 710
>gi|308047928|ref|YP_003911494.1| Tex-like protein [Ferrimonas balearica DSM 9799]
gi|307630118|gb|ADN74420.1| Tex-like protein [Ferrimonas balearica DSM 9799]
Length = 775
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 66/115 (57%), Gaps = 6/115 (5%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV
Sbjct: 644 KVSDLEPGMVLEGVVTNVANFGAFVDIGVHQDGLVHISALSNKFVEDPRTVVKAGDVVKV 703
Query: 201 RLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTR--RSTSKPGQKRD 253
+++E + RI L+MR D + + Q+ SG + R TR R S+P ++ D
Sbjct: 704 KVMEVDVPRQRIGLSMRLDDQPGEARSQR----SGGQDRPTRQPRKESRPARQSD 754
>gi|145589404|ref|YP_001156001.1| RNA-binding S1 domain-containing protein [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
gi|145047810|gb|ABP34437.1| RNA binding S1 domain protein [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
Length = 784
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 67/129 (51%), Gaps = 7/129 (5%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL G V ++ FGAF+D G DGLVH+S LS+ FVKD ++V GQ VKV
Sbjct: 656 KISDLKADMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNTFVKDPHTVVKAGQVVKV 715
Query: 201 RLIEANAETGRISLTMRESDDISKL----QQQKDATASGDKVRTT---RRSTSKPGQKRD 253
+++E + + RI+LTMR SD+ K +Q+ G +VR RR S P
Sbjct: 716 KVLEVDEKRKRIALTMRLSDEAPKAGFKPEQRAPNRPKGAEVRKPQEDRRQQSAPMNNAM 775
Query: 254 EMKTTKFVK 262
M K K
Sbjct: 776 TMALAKLKK 784
>gi|402308360|ref|ZP_10827369.1| Tex-like protein N-terminal domain protein [Prevotella sp. MSX73]
gi|400375804|gb|EJP28699.1| Tex-like protein N-terminal domain protein [Prevotella sp. MSX73]
Length = 720
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 48/75 (64%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG G V +I FGAF+D G DGLVH+S+L+D +V D +V V V+V++
Sbjct: 642 EDLCPGMVLPGIVTNITNFGAFVDIGVHQDGLVHISQLADRYVSDPNEVVQVHCHVRVKV 701
Query: 203 IEANAETGRISLTMR 217
+E + RISLTMR
Sbjct: 702 VEVDLRRHRISLTMR 716
>gi|407786504|ref|ZP_11133649.1| S1 RNA-binding domain-containing protein [Celeribacter baekdonensis
B30]
gi|407201225|gb|EKE71226.1| S1 RNA-binding domain-containing protein [Celeribacter baekdonensis
B30]
Length = 815
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 67/120 (55%), Gaps = 6/120 (5%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG + G V ++ FGAF+D G DGLVHVS+L+D FVKD +V G V+VR+
Sbjct: 667 KDLKPGMSLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVRVRV 726
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDA-TASGDKVRTTR-----RSTSKPGQKRDEMK 256
E + RI LTMR+ + + ++ DA TA G + ++ KPG +D K
Sbjct: 727 TEVDIPRKRIGLTMRKDGNSANDGRRSDAPTARGTFAAKPQGAPSGKAGGKPGGSKDHKK 786
Score = 39.7 bits (91), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 15/110 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKG----------QDLEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT F G LEGTV N+ GAF+ + +
Sbjct: 636 VRDIFTELEKPGRDPRPEFKTASFTDGVEDIKDLKPGMSLEGTVTNVAAFGAFVDIGVHQ 695
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRV--LRISRGQVTLTMKKE 334
+G + S+ +D + ++ G V VRV + I R ++ LTM+K+
Sbjct: 696 DGLVHVSQLADRFVKDPH--EVVKAGDVVRVRVTEVDIPRKRIGLTMRKD 743
>gi|378765331|ref|YP_005193790.1| transcriptional accessory protein [Pantoea ananatis LMG 5342]
gi|386077583|ref|YP_005991108.1| putative transcriptional accessory protein YhgF [Pantoea ananatis
PA13]
gi|354986764|gb|AER30888.1| putative transcriptional accessory protein YhgF [Pantoea ananatis
PA13]
gi|365184803|emb|CCF07753.1| Transcriptional accessory protein [Pantoea ananatis LMG 5342]
Length = 774
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LSD FV+D +V G VKV+++
Sbjct: 646 DLMPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKAGDIVKVKVM 705
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 706 EVDLQRKRIALTMR 719
Score = 38.9 bits (89), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 15/105 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT +F +G + LEG V N+T GAF+ + ++G + S
Sbjct: 623 KPGRDPRPEFKTAQFAEGVETLNDLMPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSL 682
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDDVG 338
SD + ++ G V V+V+ + R ++ LTM+ ++ G
Sbjct: 683 SDKFVED--PHQVVKAGDIVKVKVMEVDLQRKRIALTMRLDEQPG 725
>gi|345301237|ref|YP_004830595.1| Tex-like protein [Enterobacter asburiae LF7a]
gi|345095174|gb|AEN66810.1| Tex-like protein [Enterobacter asburiae LF7a]
Length = 776
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 50/74 (67%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S L+D FV+D ++V G VKV+++
Sbjct: 647 DLLPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|386017487|ref|YP_005935785.1| protein YhgF [Pantoea ananatis AJ13355]
gi|327395567|dbj|BAK12989.1| protein YhgF [Pantoea ananatis AJ13355]
Length = 774
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LSD FV+D +V G VKV+++
Sbjct: 646 DLMPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKAGDIVKVKVM 705
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 706 EVDLQRKRIALTMR 719
Score = 38.9 bits (89), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 15/105 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT +F +G + LEG V N+T GAF+ + ++G + S
Sbjct: 623 KPGRDPRPEFKTAQFAEGVETLNDLMPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSL 682
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDDVG 338
SD + ++ G V V+V+ + R ++ LTM+ ++ G
Sbjct: 683 SDKFVED--PHQVVKAGDIVKVKVMEVDLQRKRIALTMRLDEQPG 725
>gi|257884453|ref|ZP_05664106.1| RNA binding protein S1 [Enterococcus faecium 1,231,501]
gi|257820291|gb|EEV47439.1| RNA binding protein S1 [Enterococcus faecium 1,231,501]
Length = 726
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 49/74 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG TG VR++ FGAF+D G DGLVH+S+LS FVK +VSVG V V +
Sbjct: 647 EDLKPGMELTGTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWI 706
Query: 203 IEANAETGRISLTM 216
+ + + GRISLTM
Sbjct: 707 EQVDTKKGRISLTM 720
>gi|395243557|ref|ZP_10420542.1| 30S ribosomal protein S1 [Lactobacillus hominis CRBIP 24.179]
gi|394484177|emb|CCI81550.1| 30S ribosomal protein S1 [Lactobacillus hominis CRBIP 24.179]
Length = 401
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 97/193 (50%), Gaps = 34/193 (17%)
Query: 145 LIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIE 204
L+ G T GKV + FGAFID G DGLVH+S +S + ++ VGQ+VKV++I
Sbjct: 195 LVVGDTVEGKVSRLTGFGAFIDVGG-VDGLVHISEISYKHIDKPSDVLKVGQDVKVKVIG 253
Query: 205 ANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQ 264
+ + RISL++++ + P E T+ +G+
Sbjct: 254 IDNDRHRISLSIKQ-------------------------TLPSPF----EEATSSLTEGE 284
Query: 265 DLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI-- 322
+EG VK LT GAF+ + +G +G + SE S+ L+VGQ V V+VL I
Sbjct: 285 VIEGEVKTLTSFGAFVEVADGIQGLVHVSEISNKHVEKP--SDVLKVGQTVKVKVLNIDP 342
Query: 323 SRGQVTLTMKKED 335
S +++L++K+ D
Sbjct: 343 SDRRISLSIKQAD 355
Score = 39.7 bits (91), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 88/188 (46%), Gaps = 40/188 (21%)
Query: 149 ATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAE 208
T TG VR G +D G T G + S +S+ +V D+ +G+++ +++ E +
Sbjct: 117 GTVTGAVRG----GLLVDVG--TRGFLPASLISNRYVSDLKP--YIGKKMNLKITEIDPN 168
Query: 209 TGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEG 268
R+ L+ + D I K +++ + + V G +EG
Sbjct: 169 KNRLILSRK--DLIEKEREEAFENVA-----------------------NQLVVGDTVEG 203
Query: 269 TVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSS-LQVGQEVSVRVLRI--SRG 325
V LT GAFI + G +G + SE S + ++ S L+VGQ+V V+V+ I R
Sbjct: 204 KVSRLTGFGAFIDVG-GVDGLVHISEIS---YKHIDKPSDVLKVGQDVKVKVIGIDNDRH 259
Query: 326 QVTLTMKK 333
+++L++K+
Sbjct: 260 RISLSIKQ 267
>gi|296105102|ref|YP_003615248.1| putative transcription accessory protein [Enterobacter cloacae
subsp. cloacae ATCC 13047]
gi|295059561|gb|ADF64299.1| putative transcription accessory protein [Enterobacter cloacae
subsp. cloacae ATCC 13047]
Length = 776
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 50/74 (67%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S L+D FV+D ++V G VKV+++
Sbjct: 647 DLLPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|294615654|ref|ZP_06695509.1| protein tex [Enterococcus faecium E1636]
gi|291591483|gb|EFF23137.1| protein tex [Enterococcus faecium E1636]
Length = 726
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 49/74 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG TG VR++ FGAF+D G DGLVH+S+LS FVK +VSVG V V +
Sbjct: 647 EDLKPGMELTGTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWI 706
Query: 203 IEANAETGRISLTM 216
+ + + GRISLTM
Sbjct: 707 EQVDTKKGRISLTM 720
>gi|431740024|ref|ZP_19528943.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E2039]
gi|431756807|ref|ZP_19545439.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E3083]
gi|430604151|gb|ELB41651.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E2039]
gi|430620661|gb|ELB57463.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E3083]
Length = 726
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 49/74 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG TG VR++ FGAF+D G DGLVH+S+LS FVK +VSVG V V +
Sbjct: 647 EDLKPGMELTGTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWI 706
Query: 203 IEANAETGRISLTM 216
+ + + GRISLTM
Sbjct: 707 EQVDTKKGRISLTM 720
>gi|425056053|ref|ZP_18459513.1| Tex-like protein [Enterococcus faecium 505]
gi|403032452|gb|EJY44006.1| Tex-like protein [Enterococcus faecium 505]
Length = 726
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 49/74 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG TG VR++ FGAF+D G DGLVH+S+LS FVK +VSVG V V +
Sbjct: 647 EDLKPGMELTGTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWI 706
Query: 203 IEANAETGRISLTM 216
+ + + GRISLTM
Sbjct: 707 EQVDTKKGRISLTM 720
>gi|293556206|ref|ZP_06674796.1| protein Tex [Enterococcus faecium E1039]
gi|425057938|ref|ZP_18461335.1| Tex-like protein [Enterococcus faecium 504]
gi|430835798|ref|ZP_19453785.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E0680]
gi|430838101|ref|ZP_19456051.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E0688]
gi|430849684|ref|ZP_19467457.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1185]
gi|430858140|ref|ZP_19475769.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1552]
gi|431497699|ref|ZP_19514853.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1634]
gi|431764113|ref|ZP_19552656.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E4215]
gi|291601625|gb|EFF31887.1| protein Tex [Enterococcus faecium E1039]
gi|403039513|gb|EJY50657.1| Tex-like protein [Enterococcus faecium 504]
gi|430489160|gb|ELA65793.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E0680]
gi|430492381|gb|ELA68795.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E0688]
gi|430537435|gb|ELA77778.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1185]
gi|430546092|gb|ELA86058.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1552]
gi|430588634|gb|ELB26826.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1634]
gi|430631298|gb|ELB67620.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E4215]
Length = 726
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 49/74 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG TG VR++ FGAF+D G DGLVH+S+LS FVK +VSVG V V +
Sbjct: 647 EDLKPGMELTGTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWI 706
Query: 203 IEANAETGRISLTM 216
+ + + GRISLTM
Sbjct: 707 EQVDTKKGRISLTM 720
>gi|261341906|ref|ZP_05969764.1| protein YhgF [Enterobacter cancerogenus ATCC 35316]
gi|288315809|gb|EFC54747.1| protein YhgF [Enterobacter cancerogenus ATCC 35316]
Length = 776
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 63/109 (57%), Gaps = 3/109 (2%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S L+D FV+D ++V G VKV+++
Sbjct: 647 DLLPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKR 252
E + + RI+LTMR + + ++ + G R +R +K + R
Sbjct: 707 EVDLQRKRIALTMRLDEQPGETNARRGSNGGG---REQQRPAAKAAKPR 752
>gi|86137652|ref|ZP_01056229.1| S1 RNA binding domain protein [Roseobacter sp. MED193]
gi|85825987|gb|EAQ46185.1| S1 RNA binding domain protein [Roseobacter sp. MED193]
Length = 785
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 49/76 (64%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVHVS+L+D FVKD +V GQ VKV +
Sbjct: 644 QDLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADKFVKDPHEVVKTGQVVKVTV 703
Query: 203 IEANAETGRISLTMRE 218
E + RI+LTMR+
Sbjct: 704 TEVDVARKRIALTMRK 719
>gi|431585975|ref|ZP_19520490.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1861]
gi|430593153|gb|ELB31139.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1861]
Length = 726
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 49/74 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG TG VR++ FGAF+D G DGLVH+S+LS FVK +VSVG V V +
Sbjct: 647 EDLKPGMELTGTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWI 706
Query: 203 IEANAETGRISLTM 216
+ + + GRISLTM
Sbjct: 707 EQVDTKKGRISLTM 720
>gi|291544171|emb|CBL17280.1| Transcriptional accessory protein [Ruminococcus champanellensis
18P13]
Length = 722
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 57/95 (60%), Gaps = 8/95 (8%)
Query: 134 KSEMPP--------VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFV 185
+ E+PP ++ +DL PG G VR++ FGAF+D G DGLVH+S++ + ++
Sbjct: 624 RDELPPPLMRSGDIMELKDLKPGMELVGTVRNVIDFGAFVDIGVHEDGLVHISQICNRYI 683
Query: 186 KDVGSIVSVGQEVKVRLIEANAETGRISLTMRESD 220
K V VGQ VKVR+++ + + RI LTMR D
Sbjct: 684 KHPLDAVKVGQVVKVRVLDVDVKRKRIGLTMRLDD 718
Score = 45.8 bits (107), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 16/107 (14%)
Query: 243 RSTSKPGQK-RDE-----------MKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFL 290
R KPG+ RDE M+ G +L GTV+N+ GAF+ + E+G +
Sbjct: 614 RELQKPGRDVRDELPPPLMRSGDIMELKDLKPGMELVGTVRNVIDFGAFVDIGVHEDGLV 673
Query: 291 PTSEESDDGFANMMGGSSLQVGQEVSVRVL--RISRGQVTLTMKKED 335
S+ + + + +++VGQ V VRVL + R ++ LTM+ +D
Sbjct: 674 HISQICNRYIKHPL--DAVKVGQVVKVRVLDVDVKRKRIGLTMRLDD 718
>gi|220911765|ref|YP_002487074.1| RNA binding S1 domain-containing protein [Arthrobacter
chlorophenolicus A6]
gi|219858643|gb|ACL38985.1| RNA binding S1 domain protein [Arthrobacter chlorophenolicus A6]
Length = 830
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 55/95 (57%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAF+D G DGLVHVS L++ FV D +V GQ V+V
Sbjct: 656 KISDLKPGMVLEGTVTNVAAFGAFVDVGVHQDGLVHVSALANRFVSDPREVVKSGQVVRV 715
Query: 201 RLIEANAETGRISLTMRESDDISKLQQQKDATASG 235
+++EA+ E RISLT+R D+ Q SG
Sbjct: 716 KVLEADPERKRISLTLRLDDEPGPRGQAPRGPGSG 750
>gi|424765980|ref|ZP_18193342.1| Tex-like protein [Enterococcus faecium TX1337RF]
gi|402412987|gb|EJV45338.1| Tex-like protein [Enterococcus faecium TX1337RF]
Length = 726
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 49/74 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG TG VR++ FGAF+D G DGLVH+S+LS FVK +VSVG V V +
Sbjct: 647 EDLKPGMELTGTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWI 706
Query: 203 IEANAETGRISLTM 216
+ + + GRISLTM
Sbjct: 707 EQVDTKKGRISLTM 720
>gi|392981064|ref|YP_006479652.1| transcriptional accessory protein [Enterobacter cloacae subsp.
dissolvens SDM]
gi|392326997|gb|AFM61950.1| transcriptional accessory protein [Enterobacter cloacae subsp.
dissolvens SDM]
Length = 776
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 50/74 (67%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S L+D FV+D ++V G VKV+++
Sbjct: 647 DLLPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|418939057|ref|ZP_13492486.1| Tex-like protein [Rhizobium sp. PDO1-076]
gi|375054257|gb|EHS50636.1| Tex-like protein [Rhizobium sp. PDO1-076]
Length = 772
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 50/75 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL G T G V ++ FGAF+D G DGLVHVS+L+D FVKD +V G VKVR++
Sbjct: 648 DLKVGMTLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKVRVV 707
Query: 204 EANAETGRISLTMRE 218
E + + RI+LTMR+
Sbjct: 708 EFDVKRKRIALTMRK 722
>gi|334132181|ref|ZP_08505942.1| Putative transcription accessory protein TEX [Methyloversatilis
universalis FAM5]
gi|333442827|gb|EGK70793.1| Putative transcription accessory protein TEX [Methyloversatilis
universalis FAM5]
Length = 775
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 52/82 (63%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVHVS LS+ FVKD +V G VKV++
Sbjct: 652 KDLEPGMQLEGVVTNVTNFGAFVDIGVHQDGLVHVSALSNRFVKDPAEVVKAGDIVKVKV 711
Query: 203 IEANAETGRISLTMRESDDISK 224
IE + RI+L+MR SD+ K
Sbjct: 712 IEVDLARKRIALSMRLSDEAVK 733
>gi|293571809|ref|ZP_06682825.1| S1 RNA binding domain protein [Enterococcus faecium E980]
gi|431737594|ref|ZP_19526547.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1972]
gi|291608063|gb|EFF37369.1| S1 RNA binding domain protein [Enterococcus faecium E980]
gi|430598681|gb|ELB36416.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1972]
Length = 726
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 49/74 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG TG VR++ FGAF+D G DGLVH+S+LS FVK +VSVG V V +
Sbjct: 647 EDLKPGMELTGTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWI 706
Query: 203 IEANAETGRISLTM 216
+ + + GRISLTM
Sbjct: 707 EQVDTKKGRISLTM 720
>gi|288924888|ref|ZP_06418824.1| S1 RNA binding domain protein [Prevotella buccae D17]
gi|288338078|gb|EFC76428.1| S1 RNA binding domain protein [Prevotella buccae D17]
Length = 720
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 48/75 (64%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG G V +I FGAF+D G DGLVH+S+L+D +V D +V V V+V++
Sbjct: 642 EDLCPGMVLPGIVTNITNFGAFVDIGVHQDGLVHISQLADRYVSDPNEVVQVHCHVRVKV 701
Query: 203 IEANAETGRISLTMR 217
+E + RISLTMR
Sbjct: 702 VEVDLRRHRISLTMR 716
>gi|431762033|ref|ZP_19550595.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E3548]
gi|430624725|gb|ELB61375.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E3548]
Length = 726
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 49/74 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG TG VR++ FGAF+D G DGLVH+S+LS FVK +VSVG V V +
Sbjct: 647 EDLKPGMELTGTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWI 706
Query: 203 IEANAETGRISLTM 216
+ + + GRISLTM
Sbjct: 707 EQVDTKKGRISLTM 720
>gi|254487164|ref|ZP_05100369.1| transcriptional accessory protein [Roseobacter sp. GAI101]
gi|214044033|gb|EEB84671.1| transcriptional accessory protein [Roseobacter sp. GAI101]
Length = 802
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 53/88 (60%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG + G V ++ FGAF+D G DGLVHVS+L+D FVKD +V G V+VR+
Sbjct: 674 DLKPGMSLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVRVRVT 733
Query: 204 EANAETGRISLTMRESDDISKLQQQKDA 231
E + RI LTMR+ + K Q + A
Sbjct: 734 EVDVPRKRIGLTMRKDNSQEKSQAPRHA 761
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 15/111 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R KT F +G D LEGTV N+ GAF+ + +
Sbjct: 642 VRDILAELEKPGRDPRPAFKTASFAEGIDSITDLKPGMSLEGTVTNVAAFGAFVDIGVHQ 701
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRV--LRISRGQVTLTMKKED 335
+G + S+ +D + ++ G V VRV + + R ++ LTM+K++
Sbjct: 702 DGLVHVSQLADRFVKDPH--EVVKAGDVVRVRVTEVDVPRKRIGLTMRKDN 750
>gi|447912570|ref|YP_007393982.1| Transcription accessory protein (S1 RNA-binding) [Enterococcus
faecium NRRL B-2354]
gi|445188279|gb|AGE29921.1| Transcription accessory protein (S1 RNA-binding) [Enterococcus
faecium NRRL B-2354]
Length = 773
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 49/74 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG TG VR++ FGAF+D G DGLVH+S+LS FVK +VSVG V V +
Sbjct: 694 EDLKPGMELTGTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWI 753
Query: 203 IEANAETGRISLTM 216
+ + + GRISLTM
Sbjct: 754 EQVDTKKGRISLTM 767
>gi|182419861|ref|ZP_02951101.1| protein tex [Clostridium butyricum 5521]
gi|237666425|ref|ZP_04526410.1| tex domain protein [Clostridium butyricum E4 str. BoNT E BL5262]
gi|182376409|gb|EDT73991.1| protein tex [Clostridium butyricum 5521]
gi|237657624|gb|EEP55179.1| tex domain protein [Clostridium butyricum E4 str. BoNT E BL5262]
Length = 723
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 56/92 (60%), Gaps = 7/92 (7%)
Query: 134 KSEMPP-------VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVK 186
+ EMP ++ +DL PG G VR++ FGAF+D G DGLVH S+++D FVK
Sbjct: 627 REEMPKPILKTGIIEMKDLKPGMVLAGTVRNVSDFGAFVDIGVHQDGLVHKSQMADRFVK 686
Query: 187 DVGSIVSVGQEVKVRLIEANAETGRISLTMRE 218
IV VG VKV ++E + + RISLTM++
Sbjct: 687 HPLDIVKVGDVVKVSILEVDEKRKRISLTMKD 718
>gi|430841385|ref|ZP_19459304.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1007]
gi|431071637|ref|ZP_19494608.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1604]
gi|430494161|gb|ELA70411.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1007]
gi|430567270|gb|ELB06356.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1604]
Length = 726
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 49/74 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG TG VR++ FGAF+D G DGLVH+S+LS FVK +VSVG V V +
Sbjct: 647 EDLKPGMELTGTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWI 706
Query: 203 IEANAETGRISLTM 216
+ + + GRISLTM
Sbjct: 707 EQVDTKKGRISLTM 720
>gi|430833093|ref|ZP_19451106.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E0679]
gi|430486548|gb|ELA63384.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E0679]
Length = 726
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 49/74 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG TG VR++ FGAF+D G DGLVH+S+LS FVK +VSVG V V +
Sbjct: 647 EDLKPGMELTGTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWI 706
Query: 203 IEANAETGRISLTM 216
+ + + GRISLTM
Sbjct: 707 EQVDTKKGRISLTM 720
>gi|397736936|ref|ZP_10503612.1| protein yhgF [Rhodococcus sp. JVH1]
gi|396927220|gb|EJI94453.1| protein yhgF [Rhodococcus sp. JVH1]
Length = 778
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 61/112 (54%), Gaps = 2/112 (1%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K L PG T G V ++ FGAF+D G DGLVHVS +S NFVKD +V G VKV
Sbjct: 633 KVSHLKPGMTLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSHNFVKDPRDVVKSGDVVKV 692
Query: 201 RLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKR 252
+++E + RI LT+R D++ +K+ G R RR +P +R
Sbjct: 693 KVLEVDEARQRIGLTLRLDDEVG--AGRKNDGPRGGGQRQDRRGGGQPQDRR 742
>gi|333982224|ref|YP_004511434.1| Tex-like protein [Methylomonas methanica MC09]
gi|333806265|gb|AEF98934.1| Tex-like protein [Methylomonas methanica MC09]
Length = 759
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 55/85 (64%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAF+D G DGLVH+S L+D+FVKD S+V G V V
Sbjct: 641 KITDLQPGMRLEGVVTNVANFGAFVDIGVHQDGLVHISHLADDFVKDPRSVVKTGDMVNV 700
Query: 201 RLIEANAETGRISLTMRESDDISKL 225
R++E + RISL+M+++ D S++
Sbjct: 701 RVLEVDVARQRISLSMKKNVDNSEI 725
Score = 45.4 bits (106), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 15/103 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E K+ +F +G + LEG V N+ GAF+ + ++G + S
Sbjct: 621 KPGRDPRPEFKSVQFKEGVEKITDLQPGMRLEGVVTNVANFGAFVDIGVHQDGLVHISHL 680
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKEDD 336
+DD + S ++ G V+VRVL ++R +++L+MKK D
Sbjct: 681 ADDFVKD--PRSVVKTGDMVNVRVLEVDVARQRISLSMKKNVD 721
>gi|365847071|ref|ZP_09387562.1| Tex-like protein [Yokenella regensburgei ATCC 43003]
gi|364572887|gb|EHM50416.1| Tex-like protein [Yokenella regensburgei ATCC 43003]
Length = 778
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 50/74 (67%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S L+D FV+D ++V G VKV+++
Sbjct: 647 DLLPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|227551626|ref|ZP_03981675.1| S1 domain RNA-binding protein [Enterococcus faecium TX1330]
gi|257895772|ref|ZP_05675425.1| RNA binding protein S1 [Enterococcus faecium Com12]
gi|293377613|ref|ZP_06623802.1| S1 RNA binding domain protein [Enterococcus faecium PC4.1]
gi|431032975|ref|ZP_19490821.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1590]
gi|431106083|ref|ZP_19497240.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1613]
gi|227179189|gb|EEI60161.1| S1 domain RNA-binding protein [Enterococcus faecium TX1330]
gi|257832337|gb|EEV58758.1| RNA binding protein S1 [Enterococcus faecium Com12]
gi|292643613|gb|EFF61734.1| S1 RNA binding domain protein [Enterococcus faecium PC4.1]
gi|430564076|gb|ELB03260.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1590]
gi|430569615|gb|ELB08605.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1613]
Length = 726
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 49/74 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG TG VR++ FGAF+D G DGLVH+S+LS FVK +VSVG V V +
Sbjct: 647 EDLKPGMELTGTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWI 706
Query: 203 IEANAETGRISLTM 216
+ + + GRISLTM
Sbjct: 707 EQVDTKKGRISLTM 720
>gi|431751991|ref|ZP_19540677.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E2620]
gi|430614600|gb|ELB51580.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E2620]
Length = 726
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 49/74 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG TG VR++ FGAF+D G DGLVH+S+LS FVK +VSVG V V +
Sbjct: 647 EDLKPGMELTGTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWI 706
Query: 203 IEANAETGRISLTM 216
+ + + GRISLTM
Sbjct: 707 EQVDTKKGRISLTM 720
>gi|428316313|ref|YP_007114195.1| Tex-like protein [Oscillatoria nigro-viridis PCC 7112]
gi|428239993|gb|AFZ05779.1| Tex-like protein [Oscillatoria nigro-viridis PCC 7112]
Length = 744
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 50/74 (67%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL G G + ++ FGAF+D G DGLVH+S+L+D FV+D IV VGQ VKVR++
Sbjct: 650 DLQVGMELEGIITNVANFGAFVDVGVHQDGLVHISQLADRFVEDPKQIVKVGQVVKVRVL 709
Query: 204 EANAETGRISLTMR 217
E N + R+SLTM+
Sbjct: 710 EVNEKLKRVSLTMK 723
Score = 39.7 bits (91), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 15/102 (14%)
Query: 247 KPGQK-RDEMKTTKF---VK-------GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E K F +K G +LEG + N+ GAF+ + ++G + S+
Sbjct: 627 KPGRDPRAEFKYATFQAGIKEISDLQVGMELEGIITNVANFGAFVDVGVHQDGLVHISQL 686
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRISR--GQVTLTMKKED 335
+D + ++VGQ V VRVL ++ +V+LTMK ++
Sbjct: 687 ADRFVED--PKQIVKVGQVVKVRVLEVNEKLKRVSLTMKLQE 726
>gi|359410422|ref|ZP_09202887.1| Tex-like protein [Clostridium sp. DL-VIII]
gi|357169306|gb|EHI97480.1| Tex-like protein [Clostridium sp. DL-VIII]
Length = 725
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 58/95 (61%), Gaps = 7/95 (7%)
Query: 134 KSEMPP-------VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVK 186
+ EMP ++ +DL PG G VR++ FGAF+D G DGLVH S++++ FVK
Sbjct: 627 REEMPKPILKTGIIEMKDLKPGMVLAGTVRNVSDFGAFVDIGVHQDGLVHKSQMANRFVK 686
Query: 187 DVGSIVSVGQEVKVRLIEANAETGRISLTMRESDD 221
IV VG VKV ++E + + RISLTM++ D+
Sbjct: 687 HPLDIVKVGDIVKVAILEVDEKRKRISLTMKDIDE 721
>gi|116669460|ref|YP_830393.1| RNA-binding S1 domain-containing protein [Arthrobacter sp. FB24]
gi|116609569|gb|ABK02293.1| RNA binding S1 domain protein [Arthrobacter sp. FB24]
Length = 861
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 52/81 (64%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAF+D G DGLVHVS L++ FV D +V GQ V+V
Sbjct: 685 KISDLRPGMILEGTVTNVAAFGAFVDVGVHQDGLVHVSALANRFVSDPREVVKSGQVVRV 744
Query: 201 RLIEANAETGRISLTMRESDD 221
+++EA+ E RISLT+R D+
Sbjct: 745 KVLEADPERKRISLTLRLDDE 765
>gi|452993791|emb|CCQ94607.1| conserved hypothetical protein [Clostridium ultunense Esp]
Length = 699
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 57/92 (61%), Gaps = 7/92 (7%)
Query: 134 KSEMPP-------VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVK 186
+ EMP +K EDL TG VR++ FGAF+D G DGL+H+S LS+ +VK
Sbjct: 607 REEMPKPIFRTDVLKMEDLKEDMILTGTVRNVVDFGAFVDIGVKQDGLIHISHLSNKYVK 666
Query: 187 DVGSIVSVGQEVKVRLIEANAETGRISLTMRE 218
IV VG V+VR++E + + GRISL+M++
Sbjct: 667 HPKEIVKVGDIVQVRILEIDIDRGRISLSMKD 698
Score = 42.4 bits (98), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP + D +K + L GTV+N+ GAF+ + ++G + S S+
Sbjct: 604 RDPREEMPKPIFRTDVLKMEDLKEDMILTGTVRNVVDFGAFVDIGVKQDGLIHISHLSNK 663
Query: 299 GFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMK 332
+ ++VG V VR+L I RG+++L+MK
Sbjct: 664 YVKH--PKEIVKVGDIVQVRILEIDIDRGRISLSMK 697
>gi|430871247|ref|ZP_19483670.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1575]
gi|430558204|gb|ELA97631.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1575]
Length = 726
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 49/74 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG TG VR++ FGAF+D G DGLVH+S+LS FVK +VSVG V V +
Sbjct: 647 EDLKPGMELTGTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWI 706
Query: 203 IEANAETGRISLTM 216
+ + + GRISLTM
Sbjct: 707 EQVDTKKGRISLTM 720
>gi|314937788|ref|ZP_07845105.1| S1 RNA binding domain protein [Enterococcus faecium TX0133a04]
gi|314941666|ref|ZP_07848546.1| S1 RNA binding domain protein [Enterococcus faecium TX0133C]
gi|314950968|ref|ZP_07854035.1| S1 RNA binding domain protein [Enterococcus faecium TX0133A]
gi|314992970|ref|ZP_07858366.1| S1 RNA binding domain protein [Enterococcus faecium TX0133B]
gi|314996417|ref|ZP_07861460.1| S1 RNA binding domain protein [Enterococcus faecium TX0133a01]
gi|424971947|ref|ZP_18385345.1| Tex-like protein [Enterococcus faecium P1139]
gi|424978380|ref|ZP_18391312.1| Tex-like protein [Enterococcus faecium P1123]
gi|425034746|ref|ZP_18439613.1| Tex-like protein [Enterococcus faecium 514]
gi|425050298|ref|ZP_18454060.1| Tex-like protein [Enterococcus faecium 509]
gi|313589399|gb|EFR68244.1| S1 RNA binding domain protein [Enterococcus faecium TX0133a01]
gi|313592493|gb|EFR71338.1| S1 RNA binding domain protein [Enterococcus faecium TX0133B]
gi|313596823|gb|EFR75668.1| S1 RNA binding domain protein [Enterococcus faecium TX0133A]
gi|313599557|gb|EFR78400.1| S1 RNA binding domain protein [Enterococcus faecium TX0133C]
gi|313642819|gb|EFS07399.1| S1 RNA binding domain protein [Enterococcus faecium TX0133a04]
gi|402957013|gb|EJX74433.1| Tex-like protein [Enterococcus faecium P1139]
gi|402962084|gb|EJX79056.1| Tex-like protein [Enterococcus faecium P1123]
gi|403019429|gb|EJY32032.1| Tex-like protein [Enterococcus faecium 514]
gi|403024244|gb|EJY36418.1| Tex-like protein [Enterococcus faecium 509]
Length = 726
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 49/74 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG TG VR++ FGAF+D G DGLVH+S+LS FVK +VSVG V V +
Sbjct: 647 EDLKPGMELTGTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWI 706
Query: 203 IEANAETGRISLTM 216
+ + + GRISLTM
Sbjct: 707 EQVDTKKGRISLTM 720
>gi|430819959|ref|ZP_19438603.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E0045]
gi|430440162|gb|ELA50439.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E0045]
Length = 726
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 49/74 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG TG VR++ FGAF+D G DGLVH+S+LS FVK +VSVG V V +
Sbjct: 647 EDLKPGMELTGTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWI 706
Query: 203 IEANAETGRISLTM 216
+ + + GRISLTM
Sbjct: 707 EQVDTKKGRISLTM 720
>gi|394989039|ref|ZP_10381873.1| hypothetical protein SCD_01455 [Sulfuricella denitrificans skB26]
gi|393791458|dbj|GAB71512.1| hypothetical protein SCD_01455 [Sulfuricella denitrificans skB26]
Length = 776
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 51/79 (64%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S L+ FVKD SIV G V+V++
Sbjct: 657 KDLQPGMILEGVVTNVANFGAFVDIGVHQDGLVHISALAQKFVKDPHSIVKAGDVVRVKV 716
Query: 203 IEANAETGRISLTMRESDD 221
+E + RI+LTMR SDD
Sbjct: 717 LEIDPIRRRIALTMRLSDD 735
>gi|315607913|ref|ZP_07882906.1| YhgF like protein [Prevotella buccae ATCC 33574]
gi|315250382|gb|EFU30378.1| YhgF like protein [Prevotella buccae ATCC 33574]
Length = 711
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 48/75 (64%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG G V +I FGAF+D G DGLVH+S+L+D +V D +V V V+V++
Sbjct: 633 EDLCPGMVLPGIVTNITNFGAFVDIGVHQDGLVHISQLADRYVSDPNEVVQVHCHVRVKV 692
Query: 203 IEANAETGRISLTMR 217
+E + RISLTMR
Sbjct: 693 VEVDLRRHRISLTMR 707
>gi|111023499|ref|YP_706471.1| RNA binding protein [Rhodococcus jostii RHA1]
gi|110823029|gb|ABG98313.1| possible RNA binding protein [Rhodococcus jostii RHA1]
Length = 778
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 61/112 (54%), Gaps = 2/112 (1%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K L PG T G V ++ FGAF+D G DGLVHVS +S NFVKD +V G VKV
Sbjct: 633 KVSHLKPGMTLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSHNFVKDPRDVVKSGDVVKV 692
Query: 201 RLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKR 252
+++E + RI LT+R D++ +K+ G R RR +P +R
Sbjct: 693 KVLEVDEARQRIGLTLRLDDEVG--AGRKNDGPRGGGQRQDRRGGGQPQDRR 742
>gi|431370138|ref|ZP_19509837.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1627]
gi|430583885|gb|ELB22243.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1627]
Length = 726
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 49/74 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG TG VR++ FGAF+D G DGLVH+S+LS FVK +VSVG V V +
Sbjct: 647 EDLKPGMELTGTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWI 706
Query: 203 IEANAETGRISLTM 216
+ + + GRISLTM
Sbjct: 707 EQVDTKKGRISLTM 720
>gi|294620344|ref|ZP_06699656.1| protein tex [Enterococcus faecium E1679]
gi|431660300|ref|ZP_19523917.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1904]
gi|291593415|gb|EFF24977.1| protein tex [Enterococcus faecium E1679]
gi|430600395|gb|ELB38046.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1904]
Length = 726
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 49/74 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG TG VR++ FGAF+D G DGLVH+S+LS FVK +VSVG V V +
Sbjct: 647 EDLKPGMELTGTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWI 706
Query: 203 IEANAETGRISLTM 216
+ + + GRISLTM
Sbjct: 707 EQVDTKKGRISLTM 720
>gi|69248547|ref|ZP_00604768.1| RNA binding S1 [Enterococcus faecium DO]
gi|257878425|ref|ZP_05658078.1| RNA binding protein S1 [Enterococcus faecium 1,230,933]
gi|257882843|ref|ZP_05662496.1| RNA binding protein S1 [Enterococcus faecium 1,231,502]
gi|257889376|ref|ZP_05669029.1| RNA binding protein S1 [Enterococcus faecium 1,231,410]
gi|257894389|ref|ZP_05674042.1| RNA binding protein S1 [Enterococcus faecium 1,231,408]
gi|260560014|ref|ZP_05832192.1| RNA binding protein S1 [Enterococcus faecium C68]
gi|261207890|ref|ZP_05922575.1| RNA binding protein S1 [Enterococcus faecium TC 6]
gi|289566958|ref|ZP_06447362.1| S1 RNA binding domain-containing protein [Enterococcus faecium
D344SRF]
gi|293559960|ref|ZP_06676468.1| protein tex [Enterococcus faecium E1162]
gi|293569020|ref|ZP_06680333.1| S1 RNA binding domain protein [Enterococcus faecium E1071]
gi|294623293|ref|ZP_06702158.1| protein tex [Enterococcus faecium U0317]
gi|314948913|ref|ZP_07852282.1| S1 RNA binding domain protein [Enterococcus faecium TX0082]
gi|383328874|ref|YP_005354758.1| RNA binding protein S1 [Enterococcus faecium Aus0004]
gi|389868751|ref|YP_006376174.1| S1 domain RNA-binding protein [Enterococcus faecium DO]
gi|406580346|ref|ZP_11055555.1| RNA binding protein S1 [Enterococcus sp. GMD4E]
gi|406582556|ref|ZP_11057672.1| RNA binding protein S1 [Enterococcus sp. GMD3E]
gi|406584824|ref|ZP_11059840.1| RNA binding protein S1 [Enterococcus sp. GMD2E]
gi|406590120|ref|ZP_11064518.1| RNA binding protein S1 [Enterococcus sp. GMD1E]
gi|410937203|ref|ZP_11369064.1| S1 domain RNA-binding protein [Enterococcus sp. GMD5E]
gi|415893280|ref|ZP_11550117.1| protein tex [Enterococcus faecium E4453]
gi|416141826|ref|ZP_11599474.1| protein tex [Enterococcus faecium E4452]
gi|424792393|ref|ZP_18218630.1| Tex-like protein [Enterococcus faecium V689]
gi|424802654|ref|ZP_18228131.1| Tex-like protein [Enterococcus faecium S447]
gi|424834908|ref|ZP_18259593.1| Tex-like protein [Enterococcus faecium R501]
gi|424859610|ref|ZP_18283601.1| Tex-like protein [Enterococcus faecium R499]
gi|424869090|ref|ZP_18292813.1| Tex-like protein [Enterococcus faecium R497]
gi|424950740|ref|ZP_18365889.1| Tex-like protein [Enterococcus faecium R496]
gi|424953555|ref|ZP_18368507.1| Tex-like protein [Enterococcus faecium R494]
gi|424955606|ref|ZP_18370432.1| Tex-like protein [Enterococcus faecium R446]
gi|424960450|ref|ZP_18374965.1| Tex-like protein [Enterococcus faecium P1986]
gi|424963169|ref|ZP_18377433.1| Tex-like protein [Enterococcus faecium P1190]
gi|424967014|ref|ZP_18380755.1| Tex-like protein [Enterococcus faecium P1140]
gi|424973194|ref|ZP_18386483.1| Tex-like protein [Enterococcus faecium P1137]
gi|424980155|ref|ZP_18392969.1| Tex-like protein [Enterococcus faecium ERV99]
gi|424985190|ref|ZP_18397682.1| Tex-like protein [Enterococcus faecium ERV69]
gi|424987175|ref|ZP_18399564.1| Tex-like protein [Enterococcus faecium ERV38]
gi|424990270|ref|ZP_18402487.1| Tex-like protein [Enterococcus faecium ERV26]
gi|424995074|ref|ZP_18406972.1| Tex-like protein [Enterococcus faecium ERV168]
gi|424996908|ref|ZP_18408692.1| Tex-like protein [Enterococcus faecium ERV165]
gi|425000762|ref|ZP_18412310.1| Tex-like protein [Enterococcus faecium ERV161]
gi|425005264|ref|ZP_18416522.1| Tex-like protein [Enterococcus faecium ERV102]
gi|425006557|ref|ZP_18417729.1| Tex-like protein [Enterococcus faecium ERV1]
gi|425012297|ref|ZP_18423121.1| Tex-like protein [Enterococcus faecium E422]
gi|425015076|ref|ZP_18425717.1| Tex-like protein [Enterococcus faecium E417]
gi|425016746|ref|ZP_18427291.1| Tex-like protein [Enterococcus faecium C621]
gi|425019808|ref|ZP_18430148.1| Tex-like protein [Enterococcus faecium C497]
gi|425027906|ref|ZP_18435158.1| Tex-like protein [Enterococcus faecium C1904]
gi|425032074|ref|ZP_18437162.1| Tex-like protein [Enterococcus faecium 515]
gi|425038449|ref|ZP_18443065.1| Tex-like protein [Enterococcus faecium 513]
gi|425041829|ref|ZP_18446209.1| Tex-like protein [Enterococcus faecium 511]
gi|425045617|ref|ZP_18449707.1| Tex-like protein [Enterococcus faecium 510]
gi|425051327|ref|ZP_18454996.1| Tex-like protein [Enterococcus faecium 506]
gi|425060983|ref|ZP_18464249.1| Tex-like protein [Enterococcus faecium 503]
gi|427396182|ref|ZP_18888941.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus durans FB129-CNAB-4]
gi|430830716|ref|ZP_19448772.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E0333]
gi|430844036|ref|ZP_19461934.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1050]
gi|430846037|ref|ZP_19463902.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1133]
gi|430854816|ref|ZP_19472528.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1392]
gi|430860206|ref|ZP_19477810.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1573]
gi|430949143|ref|ZP_19486062.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1576]
gi|431005463|ref|ZP_19489109.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1578]
gi|431229785|ref|ZP_19501988.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1622]
gi|431252377|ref|ZP_19504435.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1623]
gi|431293439|ref|ZP_19506907.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1626]
gi|431541903|ref|ZP_19518132.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1731]
gi|431750116|ref|ZP_19538843.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E2297]
gi|431754819|ref|ZP_19543479.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E2883]
gi|431767194|ref|ZP_19555649.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1321]
gi|431770816|ref|ZP_19559213.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1644]
gi|431772274|ref|ZP_19560616.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E2369]
gi|431775786|ref|ZP_19564056.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E2560]
gi|431778785|ref|ZP_19566991.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E4389]
gi|431781899|ref|ZP_19570039.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E6012]
gi|431785724|ref|ZP_19573747.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E6045]
gi|68194393|gb|EAN08900.1| RNA binding S1 [Enterococcus faecium DO]
gi|257812653|gb|EEV41411.1| RNA binding protein S1 [Enterococcus faecium 1,230,933]
gi|257818501|gb|EEV45829.1| RNA binding protein S1 [Enterococcus faecium 1,231,502]
gi|257825736|gb|EEV52362.1| RNA binding protein S1 [Enterococcus faecium 1,231,410]
gi|257830768|gb|EEV57375.1| RNA binding protein S1 [Enterococcus faecium 1,231,408]
gi|260073849|gb|EEW62173.1| RNA binding protein S1 [Enterococcus faecium C68]
gi|260078273|gb|EEW65979.1| RNA binding protein S1 [Enterococcus faecium TC 6]
gi|289161257|gb|EFD09153.1| S1 RNA binding domain-containing protein [Enterococcus faecium
D344SRF]
gi|291588453|gb|EFF20288.1| S1 RNA binding domain protein [Enterococcus faecium E1071]
gi|291597321|gb|EFF28507.1| protein tex [Enterococcus faecium U0317]
gi|291606048|gb|EFF35474.1| protein tex [Enterococcus faecium E1162]
gi|313644703|gb|EFS09283.1| S1 RNA binding domain protein [Enterococcus faecium TX0082]
gi|364089939|gb|EHM32579.1| protein tex [Enterococcus faecium E4452]
gi|364092827|gb|EHM35158.1| protein tex [Enterococcus faecium E4453]
gi|378938568|gb|AFC63640.1| RNA binding protein S1 [Enterococcus faecium Aus0004]
gi|388534000|gb|AFK59192.1| S1 domain RNA-binding protein [Enterococcus faecium DO]
gi|402917672|gb|EJX38426.1| Tex-like protein [Enterococcus faecium V689]
gi|402919373|gb|EJX39979.1| Tex-like protein [Enterococcus faecium S447]
gi|402921843|gb|EJX42262.1| Tex-like protein [Enterococcus faecium R501]
gi|402926273|gb|EJX46324.1| Tex-like protein [Enterococcus faecium R499]
gi|402932538|gb|EJX52037.1| Tex-like protein [Enterococcus faecium R496]
gi|402936145|gb|EJX55343.1| Tex-like protein [Enterococcus faecium R497]
gi|402938760|gb|EJX57741.1| Tex-like protein [Enterococcus faecium R494]
gi|402947728|gb|EJX65920.1| Tex-like protein [Enterococcus faecium P1986]
gi|402948255|gb|EJX66408.1| Tex-like protein [Enterococcus faecium R446]
gi|402950171|gb|EJX68183.1| Tex-like protein [Enterococcus faecium P1190]
gi|402955281|gb|EJX72823.1| Tex-like protein [Enterococcus faecium P1140]
gi|402959233|gb|EJX76507.1| Tex-like protein [Enterococcus faecium P1137]
gi|402966608|gb|EJX83228.1| Tex-like protein [Enterococcus faecium ERV69]
gi|402967256|gb|EJX83828.1| Tex-like protein [Enterococcus faecium ERV99]
gi|402974995|gb|EJX90987.1| Tex-like protein [Enterococcus faecium ERV38]
gi|402978287|gb|EJX94042.1| Tex-like protein [Enterococcus faecium ERV168]
gi|402979846|gb|EJX95493.1| Tex-like protein [Enterococcus faecium ERV26]
gi|402986667|gb|EJY01779.1| Tex-like protein [Enterococcus faecium ERV102]
gi|402987442|gb|EJY02504.1| Tex-like protein [Enterococcus faecium ERV165]
gi|402988500|gb|EJY03503.1| Tex-like protein [Enterococcus faecium ERV161]
gi|402993754|gb|EJY08342.1| Tex-like protein [Enterococcus faecium E422]
gi|402996853|gb|EJY11214.1| Tex-like protein [Enterococcus faecium E417]
gi|402997089|gb|EJY11439.1| Tex-like protein [Enterococcus faecium ERV1]
gi|403004978|gb|EJY18729.1| Tex-like protein [Enterococcus faecium C1904]
gi|403006186|gb|EJY19850.1| Tex-like protein [Enterococcus faecium C621]
gi|403010753|gb|EJY24104.1| Tex-like protein [Enterococcus faecium C497]
gi|403014054|gb|EJY27074.1| Tex-like protein [Enterococcus faecium 515]
gi|403019554|gb|EJY32150.1| Tex-like protein [Enterococcus faecium 513]
gi|403025328|gb|EJY37414.1| Tex-like protein [Enterococcus faecium 511]
gi|403026625|gb|EJY38582.1| Tex-like protein [Enterococcus faecium 510]
gi|403037849|gb|EJY49100.1| Tex-like protein [Enterococcus faecium 506]
gi|403042091|gb|EJY53066.1| Tex-like protein [Enterococcus faecium 503]
gi|404454187|gb|EKA01150.1| RNA binding protein S1 [Enterococcus sp. GMD4E]
gi|404457919|gb|EKA04398.1| RNA binding protein S1 [Enterococcus sp. GMD3E]
gi|404463530|gb|EKA09148.1| RNA binding protein S1 [Enterococcus sp. GMD2E]
gi|404469827|gb|EKA14540.1| RNA binding protein S1 [Enterococcus sp. GMD1E]
gi|410734314|gb|EKQ76234.1| S1 domain RNA-binding protein [Enterococcus sp. GMD5E]
gi|425722852|gb|EKU85743.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus durans FB129-CNAB-4]
gi|430482305|gb|ELA59423.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E0333]
gi|430496626|gb|ELA72685.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1050]
gi|430539857|gb|ELA80096.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1133]
gi|430547695|gb|ELA87611.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1392]
gi|430552643|gb|ELA92371.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1573]
gi|430557988|gb|ELA97424.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1576]
gi|430561496|gb|ELB00764.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1578]
gi|430573771|gb|ELB12549.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1622]
gi|430578803|gb|ELB17355.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1623]
gi|430582076|gb|ELB20511.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1626]
gi|430592950|gb|ELB30937.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1731]
gi|430610589|gb|ELB47733.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E2297]
gi|430618647|gb|ELB55488.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E2883]
gi|430631202|gb|ELB67525.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1321]
gi|430634707|gb|ELB70821.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1644]
gi|430638138|gb|ELB74115.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E2369]
gi|430642434|gb|ELB78212.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E2560]
gi|430643446|gb|ELB79185.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E4389]
gi|430646883|gb|ELB82344.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E6045]
gi|430648300|gb|ELB83707.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E6012]
Length = 726
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 49/74 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG TG VR++ FGAF+D G DGLVH+S+LS FVK +VSVG V V +
Sbjct: 647 EDLKPGMELTGTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWI 706
Query: 203 IEANAETGRISLTM 216
+ + + GRISLTM
Sbjct: 707 EQVDTKKGRISLTM 720
>gi|430851669|ref|ZP_19469404.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1258]
gi|430542251|gb|ELA82359.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1258]
Length = 726
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 49/74 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG TG VR++ FGAF+D G DGLVH+S+LS FVK +VSVG V V +
Sbjct: 647 EDLKPGMELTGTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWI 706
Query: 203 IEANAETGRISLTM 216
+ + + GRISLTM
Sbjct: 707 EQVDTKKGRISLTM 720
>gi|430825495|ref|ZP_19443699.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E0164]
gi|430827624|ref|ZP_19445757.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E0269]
gi|431146147|ref|ZP_19499044.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1620]
gi|431746183|ref|ZP_19535017.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E2134]
gi|430445960|gb|ELA55659.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E0164]
gi|430484484|gb|ELA61499.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E0269]
gi|430575687|gb|ELB14384.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1620]
gi|430608952|gb|ELB46158.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E2134]
Length = 726
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 49/74 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG TG VR++ FGAF+D G DGLVH+S+LS FVK +VSVG V V +
Sbjct: 647 EDLKPGMELTGTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWI 706
Query: 203 IEANAETGRISLTM 216
+ + + GRISLTM
Sbjct: 707 EQVDTKKGRISLTM 720
>gi|430822530|ref|ZP_19441108.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E0120]
gi|430865090|ref|ZP_19480848.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1574]
gi|431743127|ref|ZP_19532008.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E2071]
gi|430443107|gb|ELA53104.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E0120]
gi|430553168|gb|ELA92869.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1574]
gi|430607491|gb|ELB44811.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E2071]
Length = 726
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 49/74 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG TG VR++ FGAF+D G DGLVH+S+LS FVK +VSVG V V +
Sbjct: 647 EDLKPGMELTGTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWI 706
Query: 203 IEANAETGRISLTM 216
+ + + GRISLTM
Sbjct: 707 EQVDTKKGRISLTM 720
>gi|33592276|ref|NP_879920.1| transcription accessory protein [Bordetella pertussis Tohama I]
gi|384203579|ref|YP_005589318.1| transcription accessory protein [Bordetella pertussis CS]
gi|34978385|sp|Q45388.2|TEX_BORPE RecName: Full=Protein tex
gi|33571921|emb|CAE41441.1| transcription accessory protein [Bordetella pertussis Tohama I]
gi|332381693|gb|AEE66540.1| transcription accessory protein [Bordetella pertussis CS]
Length = 791
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 50/77 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L++ FVKD +V VGQ V V+++
Sbjct: 666 DLFPGMVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVTVKVL 725
Query: 204 EANAETGRISLTMRESD 220
E + R++LTMR +D
Sbjct: 726 EVDVARKRVALTMRLND 742
Score = 42.0 bits (97), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 15/111 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT +F +G + LEG V N+ GAF+ + +
Sbjct: 634 VRDIFAELEKPGRDPRPEFKTAQFKEGVETLNDLFPGMVLEGVVTNVANFGAFVDIGVHQ 693
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKED 335
+G + S ++ + ++VGQ V+V+VL ++R +V LTM+ D
Sbjct: 694 DGLVHISALAEKFVKDPR--DVVRVGQTVTVKVLEVDVARKRVALTMRLND 742
>gi|187477713|ref|YP_785737.1| transcription accessory protein [Bordetella avium 197N]
gi|115422299|emb|CAJ48823.1| transcription accessory protein [Bordetella avium 197N]
Length = 790
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 53/79 (67%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S L++ FVKD +V VGQ V V++
Sbjct: 665 KDLHPGMLLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVTVKV 724
Query: 203 IEANAETGRISLTMRESDD 221
+E + + R++LTMR +D+
Sbjct: 725 LEVDVQRKRVALTMRLNDN 743
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 15/112 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT +F +G + LEG V N+ GAF+ + +
Sbjct: 634 VRDIFAELEKPGRDPRPEFKTAQFKEGVETLKDLHPGMLLEGVVTNVANFGAFVDIGVHQ 693
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKEDD 336
+G + S ++ + ++VGQ V+V+VL + R +V LTM+ D+
Sbjct: 694 DGLVHISALAEKFVKDPR--DVVRVGQTVTVKVLEVDVQRKRVALTMRLNDN 743
>gi|15896097|ref|NP_349446.1| transcription accessory protein [Clostridium acetobutylicum ATCC
824]
gi|337738051|ref|YP_004637498.1| transcription accessory protein [Clostridium acetobutylicum DSM
1731]
gi|15025886|gb|AAK80786.1|AE007781_9 Transcription accessory protein TEX, RNA-binding protein containing
S1 domain [Clostridium acetobutylicum ATCC 824]
gi|336291448|gb|AEI32582.1| transcription accessory protein [Clostridium acetobutylicum DSM
1731]
Length = 718
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 50/71 (70%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G T G VR++ FGAF+D G DGLVH+S+LSD+FVK +V VG V+VR++E +
Sbjct: 648 GMTLMGTVRNVADFGAFVDIGVHQDGLVHISQLSDSFVKHPLDVVKVGDIVEVRILEVDE 707
Query: 208 ETGRISLTMRE 218
+ RISLTM++
Sbjct: 708 KRNRISLTMKK 718
Score = 47.4 bits (111), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP K M + G L GTV+N+ GAF+ + ++G + S+ SD
Sbjct: 624 RDPREEMPKPILKTGIMDIKQLKSGMTLMGTVRNVADFGAFVDIGVHQDGLVHISQLSDS 683
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKK 333
+ + ++VG V VR+L + R +++LTMKK
Sbjct: 684 FVKHPL--DVVKVGDIVEVRILEVDEKRNRISLTMKK 718
>gi|401765592|ref|YP_006580599.1| transcriptional accessory protein [Enterobacter cloacae subsp.
cloacae ENHKU01]
gi|400177126|gb|AFP71975.1| transcriptional accessory protein [Enterobacter cloacae subsp.
cloacae ENHKU01]
Length = 776
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 50/74 (67%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S L+D FV+D ++V G VKV+++
Sbjct: 647 DLLPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|357405835|ref|YP_004917759.1| 30S ribosomal protein S1 [Methylomicrobium alcaliphilum 20Z]
gi|351718500|emb|CCE24171.1| 30S ribosomal subunit protein S1 [Methylomicrobium alcaliphilum
20Z]
Length = 553
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 92/191 (48%), Gaps = 33/191 (17%)
Query: 145 LIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIE 204
L GA TG V+++ +GAFID G DGL+H++ ++ V+ V +GQEVKV++++
Sbjct: 189 LHDGAEVTGIVKNLTDYGAFIDLGGI-DGLLHITDMAWRRVRHPSECVEIGQEVKVKVLK 247
Query: 205 ANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQ 264
+ E R+SL M++ + P Q ++ G
Sbjct: 248 FDKEKNRVSLGMKQLGE-------------------------DPWQN----IARRYPAGT 278
Query: 265 DLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRIS- 323
+ G V NLT G FI + EG EG + S E D N+ +Q+G EV V VL I
Sbjct: 279 RVFGKVNNLTDYGCFIEIEEGVEGLVHVS-EMDWTNKNVNPSKVVQLGDEVEVMVLEIDE 337
Query: 324 -RGQVTLTMKK 333
R +++L MK+
Sbjct: 338 ERRRISLGMKQ 348
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 87/193 (45%), Gaps = 38/193 (19%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSI---VSVGQEVKVRLIE 204
G +GK++SI FG FI DGLVH+S +S + D ++ G EV+ ++
Sbjct: 364 GDKISGKIKSITDFGIFIGLDGGIDGLVHMSDIS--WTDDTEAVARDYKKGDEVETVILA 421
Query: 205 ANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQ 264
+AE RISL I +L+Q P Q + KG
Sbjct: 422 VDAERERISLG------IKQLEQD-------------------PFQNYLALHE----KGS 452
Query: 265 DLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISR 324
+ GT+K + GA I+L + EG+L SE D + + L+ G+++ + + + +
Sbjct: 453 LVNGTIKEVDAKGAVITLADNVEGYLRASEIQRDRVEDAR--TLLKEGEQIEAKFIGVDK 510
Query: 325 --GQVTLTMKKED 335
++L++K +D
Sbjct: 511 KSKSISLSIKAKD 523
>gi|365972481|ref|YP_004954042.1| protein YhgF [Enterobacter cloacae EcWSU1]
gi|365751394|gb|AEW75621.1| YhgF [Enterobacter cloacae EcWSU1]
Length = 776
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 50/74 (67%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S L+D FV+D ++V G VKV+++
Sbjct: 647 DLLPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAGDIVKVKVM 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|33602576|ref|NP_890136.1| transcription accessory protein [Bordetella bronchiseptica RB50]
gi|410421104|ref|YP_006901553.1| transcription accessory protein [Bordetella bronchiseptica MO149]
gi|410473697|ref|YP_006896978.1| transcription accessory protein [Bordetella parapertussis Bpp5]
gi|412342037|ref|YP_006970792.1| transcription accessory protein [Bordetella bronchiseptica 253]
gi|427815644|ref|ZP_18982708.1| transcription accessory protein [Bordetella bronchiseptica 1289]
gi|427818204|ref|ZP_18985267.1| transcription accessory protein [Bordetella bronchiseptica D445]
gi|427825943|ref|ZP_18993005.1| transcription accessory protein [Bordetella bronchiseptica Bbr77]
gi|33577015|emb|CAE34095.1| transcription accessory protein [Bordetella bronchiseptica RB50]
gi|408443807|emb|CCJ50498.1| transcription accessory protein [Bordetella parapertussis Bpp5]
gi|408448399|emb|CCJ60080.1| transcription accessory protein [Bordetella bronchiseptica MO149]
gi|408771871|emb|CCJ56677.1| transcription accessory protein [Bordetella bronchiseptica 253]
gi|410566644|emb|CCN24212.1| transcription accessory protein [Bordetella bronchiseptica 1289]
gi|410569204|emb|CCN17291.1| transcription accessory protein [Bordetella bronchiseptica D445]
gi|410591208|emb|CCN06306.1| transcription accessory protein [Bordetella bronchiseptica Bbr77]
Length = 791
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 50/77 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L++ FVKD +V VGQ V V+++
Sbjct: 666 DLFPGMVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVTVKVL 725
Query: 204 EANAETGRISLTMRESD 220
E + R++LTMR +D
Sbjct: 726 EVDVARKRVALTMRLND 742
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 15/111 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT +F +G + LEG V N+ GAF+ + +
Sbjct: 634 VRDIFAELEKPGRDPRPEFKTAQFKEGVETLNDLFPGMVLEGVVTNVANFGAFVDIGVHQ 693
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKED 335
+G + S ++ + ++VGQ V+V+VL ++R +V LTM+ D
Sbjct: 694 DGLVHISALAEKFVKDPR--DVVRVGQTVTVKVLEVDVARKRVALTMRLND 742
>gi|334119405|ref|ZP_08493491.1| Tex-like protein [Microcoleus vaginatus FGP-2]
gi|333458193|gb|EGK86812.1| Tex-like protein [Microcoleus vaginatus FGP-2]
Length = 736
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL G G + ++ FGAF+D G DGLVHVS+L+D FV D IV VGQ VKVR++
Sbjct: 642 DLQVGMELEGIITNVANFGAFVDVGVHQDGLVHVSQLADRFVDDPKQIVKVGQVVKVRVL 701
Query: 204 EANAETGRISLTMR 217
E N + R+SLTM+
Sbjct: 702 EVNEKLKRVSLTMK 715
Score = 39.3 bits (90), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 15/102 (14%)
Query: 247 KPGQK-RDEMKTTKF---VK-------GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E K F +K G +LEG + N+ GAF+ + ++G + S+
Sbjct: 619 KPGRDPRAEFKYATFQAGIKEISDLQVGMELEGIITNVANFGAFVDVGVHQDGLVHVSQL 678
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRISR--GQVTLTMKKED 335
+D + ++VGQ V VRVL ++ +V+LTMK ++
Sbjct: 679 ADRFVDD--PKQIVKVGQVVKVRVLEVNEKLKRVSLTMKLQE 718
>gi|188535335|ref|YP_001909132.1| RNA binding protein [Erwinia tasmaniensis Et1/99]
gi|188030377|emb|CAO98268.1| Putative RNA binding protein [Erwinia tasmaniensis Et1/99]
Length = 777
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S L+D FV D +V G VKV+++
Sbjct: 647 DLLPGMVLEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVM 706
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKR 252
E + + RI+LTMR + + ++ T + R R ++ G KR
Sbjct: 707 EVDLQRKRIALTMRLDEQPGETNARRGGTQNAANERNNARP-ARAGNKR 754
Score = 38.9 bits (89), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 15/105 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT +F G D LEG+V N+T GAF+ + ++G + S
Sbjct: 624 KPGRDPRPEFKTAQFADGIDTMSDLLPGMVLEGSVTNVTNFGAFVDIGVHQDGLVHISSL 683
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDDVG 338
+D + ++ G V V+V+ + R ++ LTM+ ++ G
Sbjct: 684 ADKFVDD--PHKVVKAGDIVKVKVMEVDLQRKRIALTMRLDEQPG 726
>gi|440783126|ref|ZP_20960937.1| Transcription accessory protein TEX, RNA-binding protein containing
S1 domain [Clostridium pasteurianum DSM 525]
gi|440219701|gb|ELP58912.1| Transcription accessory protein TEX, RNA-binding protein containing
S1 domain [Clostridium pasteurianum DSM 525]
Length = 718
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 57/92 (61%), Gaps = 7/92 (7%)
Query: 134 KSEMP-PVKNEDLI------PGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVK 186
+ EMP PV +I PG TG VR++ FGAF+D G DGLVH+S+LSD FVK
Sbjct: 627 REEMPKPVLKTGIIDISQLKPGMVLTGTVRNVADFGAFVDIGVHQDGLVHISQLSDKFVK 686
Query: 187 DVGSIVSVGQEVKVRLIEANAETGRISLTMRE 218
+V VG ++V ++E + + RISLTM++
Sbjct: 687 HPLDVVKVGDIIEVTVLEIDEKRNRISLTMKK 718
Score = 43.5 bits (101), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 81/164 (49%), Gaps = 17/164 (10%)
Query: 173 GLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISL-TMRESDDISKLQQQKDA 231
GL+ + ++ +K+ G+++ + +VK IE AE I + T+ SD + ++++
Sbjct: 569 GLLDILDYTEKDIKE-GNLLDIDNKVKFLGIEKLAEKLEIGVPTL--SDIVKEIKKPG-- 623
Query: 232 TASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLP 291
R R KP K + ++ G L GTV+N+ GAF+ + ++G +
Sbjct: 624 -------RDPREEMPKPVLKTGIIDISQLKPGMVLTGTVRNVADFGAFVDIGVHQDGLVH 676
Query: 292 TSEESDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKK 333
S+ SD + + ++VG + V VL I R +++LTMKK
Sbjct: 677 ISQLSDKFVKHPL--DVVKVGDIIEVTVLEIDEKRNRISLTMKK 718
>gi|50123042|ref|YP_052209.1| RNA binding protein [Pectobacterium atrosepticum SCRI1043]
gi|49613568|emb|CAG77019.1| putative RNA binding protein [Pectobacterium atrosepticum SCRI1043]
Length = 777
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 50/75 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL+PG G V ++ FGAF+D G DGLVH+S L+D+FV D +V G VKV++
Sbjct: 645 KDLLPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLADHFVDDPHKVVKAGDIVKVKV 704
Query: 203 IEANAETGRISLTMR 217
+E + + RI+LTMR
Sbjct: 705 MEVDLQRKRIALTMR 719
>gi|33597728|ref|NP_885371.1| transcription accessory protein [Bordetella parapertussis 12822]
gi|33574156|emb|CAE38486.1| transcription accessory protein [Bordetella parapertussis]
Length = 791
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 50/77 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L++ FVKD +V VGQ V V+++
Sbjct: 666 DLFPGMVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVTVKVL 725
Query: 204 EANAETGRISLTMRESD 220
E + R++LTMR +D
Sbjct: 726 EVDVARKRVALTMRLND 742
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 15/111 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT +F +G + LEG V N+ GAF+ + +
Sbjct: 634 VRDIFAELEKPGRDPRPEFKTAQFKEGVETLNDLFPGMVLEGVVTNVANFGAFVDIGVHQ 693
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKED 335
+G + S ++ + ++VGQ V+V+VL ++R +V LTM+ D
Sbjct: 694 DGLVHISALAEKFVKDPR--DVVRVGQTVTVKVLEVDVARKRVALTMRLND 742
>gi|400753859|ref|YP_006562227.1| hypothetical protein PGA2_c09730 [Phaeobacter gallaeciensis 2.10]
gi|398653012|gb|AFO86982.1| hypothetical protein PGA2_c09730 [Phaeobacter gallaeciensis 2.10]
Length = 788
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 55/99 (55%), Gaps = 11/99 (11%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVHVS+L+D FVKD +V GQ VKV +
Sbjct: 645 DLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKTGQVVKVTVT 704
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTR 242
E + RI+LTM+ KD AS + RT R
Sbjct: 705 EVDVPRKRIALTMK-----------KDGGASAKEERTAR 732
>gi|1477402|emb|CAA64672.1| tex [Bordetella pertussis Tohama I]
Length = 791
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 50/77 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L++ FVKD +V VGQ V V+++
Sbjct: 666 DLFPGMVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVTVKVL 725
Query: 204 EANAETGRISLTMRESD 220
E + R++LTMR +D
Sbjct: 726 EVDVARKRVALTMRLND 742
Score = 42.0 bits (97), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 15/111 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT +F +G + LEG V N+ GAF+ + +
Sbjct: 634 VRDIFAELEKPGRDPRPEFKTAQFKEGVETLNDLFPGMVLEGVVTNVANFGAFVDIGVHQ 693
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKED 335
+G + S ++ + ++VGQ V+V+VL ++R +V LTM+ D
Sbjct: 694 DGLVHISALAEKFVKDPR--DVVRVGQTVTVKVLEVDVARKRVALTMRLND 742
>gi|408415502|ref|YP_006626209.1| transcription accessory protein [Bordetella pertussis 18323]
gi|401777672|emb|CCJ62999.1| transcription accessory protein [Bordetella pertussis 18323]
Length = 791
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 50/77 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L++ FVKD +V VGQ V V+++
Sbjct: 666 DLFPGMVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVTVKVL 725
Query: 204 EANAETGRISLTMRESD 220
E + R++LTMR +D
Sbjct: 726 EVDVARKRVALTMRLND 742
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 15/111 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT +F +G + LEG V N+ GAF+ + +
Sbjct: 634 VRDIFAELEKPGRDPRPEFKTAQFKEGVETLNDLFPGMVLEGVVTNVANFGAFVDIGVHQ 693
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKED 335
+G + S ++ + ++VGQ V+V+VL ++R +V LTM+ D
Sbjct: 694 DGLVHISALAEKFVKDPR--DVVRVGQTVTVKVLEVDVARKRVALTMRLND 742
>gi|224368955|ref|YP_002603119.1| transcriptional accessory protein (S1 RNA binding domain-containing
protein) [Desulfobacterium autotrophicum HRM2]
gi|223691672|gb|ACN14955.1| transcriptional accessory protein (S1 RNA binding domain protein)
[Desulfobacterium autotrophicum HRM2]
Length = 703
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 51/77 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL+PG G V ++ FGAF+D G DGLVH+S+L+D FVKD +V V Q+V V +
Sbjct: 627 KDLVPGMRVPGLVTNVTAFGAFVDIGVHQDGLVHISQLADRFVKDPNEVVKVRQQVTVTV 686
Query: 203 IEANAETGRISLTMRES 219
+E + RISL+MR S
Sbjct: 687 LEVDINRQRISLSMRNS 703
>gi|162452566|ref|YP_001614933.1| hypothetical protein sce4290 [Sorangium cellulosum So ce56]
gi|161163148|emb|CAN94453.1| hypothetical protein sce4290 [Sorangium cellulosum So ce56]
Length = 788
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 58/97 (59%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG G V ++ FGAF+D G DGLVHVS+L+D FVKD + VG+++KVR+
Sbjct: 654 EDLKPGMELEGVVTNVTAFGAFVDIGVHQDGLVHVSQLADRFVKDPNEVAKVGEKIKVRV 713
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVR 239
+E + RISLT ++ + + Q ++G R
Sbjct: 714 LEIDLVRKRISLTAKKGGAPAGARPQAGGPSAGGDAR 750
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 80/164 (48%), Gaps = 15/164 (9%)
Query: 175 VHVSR--LSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDAT 232
VH R L + D+G V VG LI A RI E+ D+ D
Sbjct: 576 VHPERYGLVERIAADLG--VPVGS-----LIGDTAAIARIDPKKYEAGDVGSFTLN-DIL 627
Query: 233 ASGDKVRTTRRSTSKPGQKRDEMKTTKFVK-GQDLEGTVKNLTRSGAFISLPEGEEGFLP 291
+ K R+T +P + RD+++T + +K G +LEG V N+T GAF+ + ++G +
Sbjct: 628 SELKKPGRDPRATFEPPKFRDDVRTMEDLKPGMELEGVVTNVTAFGAFVDIGVHQDGLVH 687
Query: 292 TSEESDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKK 333
S+ +D + +VG+++ VRVL I R +++LT KK
Sbjct: 688 VSQLADRFVKDP--NEVAKVGEKIKVRVLEIDLVRKRISLTAKK 729
>gi|398835885|ref|ZP_10593238.1| transcriptional accessory protein [Herbaspirillum sp. YR522]
gi|398214640|gb|EJN01215.1| transcriptional accessory protein [Herbaspirillum sp. YR522]
Length = 783
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 52/78 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL P G V ++ FGAF+D G DGLVH+S LS+ FVKD ++V GQ VKV++
Sbjct: 658 KDLRPDMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNTFVKDPHTVVKAGQVVKVKV 717
Query: 203 IEANAETGRISLTMRESD 220
+E + + RI+LTMR +D
Sbjct: 718 LEVDEKRKRIALTMRLAD 735
>gi|294675912|ref|YP_003576527.1| S1 RNA binding domain-containing protein [Rhodobacter capsulatus SB
1003]
gi|294474732|gb|ADE84120.1| S1 RNA binding domain protein [Rhodobacter capsulatus SB 1003]
Length = 769
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 49/76 (64%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S+L+D FVKD +V G VKVR+
Sbjct: 643 KDLKPGMQLEGTVTNVAAFGAFVDIGVHQDGLVHISQLADRFVKDPHEVVKAGDVVKVRV 702
Query: 203 IEANAETGRISLTMRE 218
E + RI+LTMR+
Sbjct: 703 TEVDVARKRIALTMRK 718
>gi|262273561|ref|ZP_06051375.1| transcription accessory protein [Grimontia hollisae CIP 101886]
gi|262222539|gb|EEY73850.1| transcription accessory protein [Grimontia hollisae CIP 101886]
Length = 775
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 51/79 (64%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DLIPG G + ++ FGAF+D G DGLVH+S LSD F+ D +V G VKV++
Sbjct: 646 KDLIPGMVLEGVITNVTNFGAFVDVGVHQDGLVHISALSDKFISDPRDVVKAGDVVKVKV 705
Query: 203 IEANAETGRISLTMRESDD 221
+E + + RI L+MR SD+
Sbjct: 706 MEVDLQRKRIGLSMRLSDE 724
Score = 40.0 bits (92), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 15/108 (13%)
Query: 246 SKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSE 294
+KPG+ R E KT F +G + LEG + N+T GAF+ + ++G + S
Sbjct: 623 AKPGRDPRPEFKTATFAEGVNEVKDLIPGMVLEGVITNVTNFGAFVDVGVHQDGLVHISA 682
Query: 295 ESDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDDVGSN 340
SD ++ ++ G V V+V+ + R ++ L+M+ D+ G++
Sbjct: 683 LSDKFISDPR--DVVKAGDVVKVKVMEVDLQRKRIGLSMRLSDEPGTD 728
>gi|163856154|ref|YP_001630452.1| transcription accessory protein [Bordetella petrii DSM 12804]
gi|163259882|emb|CAP42183.1| transcription accessory protein [Bordetella petrii]
Length = 791
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 50/77 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L++ FVKD +V VGQ V V+++
Sbjct: 666 DLYPGMVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVTVKVL 725
Query: 204 EANAETGRISLTMRESD 220
E + R++LTMR +D
Sbjct: 726 EVDVARKRVALTMRLND 742
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 15/111 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKF----------VKGQDLEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT +F G LEG V N+ GAF+ + +
Sbjct: 634 VRDIFAELEKPGRDPRPEFKTAQFKDGVETLNDLYPGMVLEGVVTNVANFGAFVDIGVHQ 693
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKED 335
+G + S ++ + ++VGQ V+V+VL ++R +V LTM+ D
Sbjct: 694 DGLVHISALAEKFVKDPR--DVVRVGQTVTVKVLEVDVARKRVALTMRLND 742
>gi|399992183|ref|YP_006572423.1| S1 domain-containing protein [Phaeobacter gallaeciensis DSM 17395 =
CIP 105210]
gi|398656738|gb|AFO90704.1| S1 domain-containing protein [Phaeobacter gallaeciensis DSM 17395 =
CIP 105210]
Length = 788
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 55/99 (55%), Gaps = 11/99 (11%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVHVS+L+D FVKD +V GQ VKV +
Sbjct: 645 DLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKTGQVVKVTVT 704
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTR 242
E + RI+LTM+ KD AS + RT R
Sbjct: 705 EVDVPRKRIALTMK-----------KDGGASAKEERTAR 732
>gi|384459562|ref|YP_005671982.1| Transcription accessory protein TEX, RNA-binding protein containing
S1 domain [Clostridium acetobutylicum EA 2018]
gi|325510251|gb|ADZ21887.1| Transcription accessory protein TEX, RNA-binding protein containing
S1 domain [Clostridium acetobutylicum EA 2018]
Length = 724
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 50/71 (70%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G T G VR++ FGAF+D G DGLVH+S+LSD+FVK +V VG V+VR++E +
Sbjct: 654 GMTLMGTVRNVADFGAFVDIGVHQDGLVHISQLSDSFVKHPLDVVKVGDIVEVRILEVDE 713
Query: 208 ETGRISLTMRE 218
+ RISLTM++
Sbjct: 714 KRNRISLTMKK 724
Score = 47.0 bits (110), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP K M + G L GTV+N+ GAF+ + ++G + S+ SD
Sbjct: 630 RDPREEMPKPILKTGIMDIKQLKSGMTLMGTVRNVADFGAFVDIGVHQDGLVHISQLSDS 689
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKK 333
+ + ++VG V VR+L + R +++LTMKK
Sbjct: 690 FVKHPL--DVVKVGDIVEVRILEVDEKRNRISLTMKK 724
>gi|357633674|ref|ZP_09131552.1| Tex-like protein [Desulfovibrio sp. FW1012B]
gi|357582228|gb|EHJ47561.1| Tex-like protein [Desulfovibrio sp. FW1012B]
Length = 714
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 51/77 (66%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
+ EDL G G V ++ FGAF+D G DG+VHVS+L+D FV D +VSV +EV V
Sbjct: 629 RIEDLAAGMELPGLVTNVTRFGAFVDIGVHRDGMVHVSQLADRFVSDPAEVVSVSREVWV 688
Query: 201 RLIEANAETGRISLTMR 217
R++E + E GRI L++R
Sbjct: 689 RVVEIDLERGRIGLSLR 705
>gi|329904248|ref|ZP_08273723.1| RNA binding S1 domain protein [Oxalobacteraceae bacterium IMCC9480]
gi|327548072|gb|EGF32801.1| RNA binding S1 domain protein [Oxalobacteraceae bacterium IMCC9480]
Length = 781
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 58/91 (63%), Gaps = 4/91 (4%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL P G V ++ FGAF+D G DGLVH+S LS+ FVKD S+V GQ V+V+++
Sbjct: 659 DLRPDMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNTFVKDPHSVVKAGQVVRVKVL 718
Query: 204 EANAETGRISLTMRESDDI----SKLQQQKD 230
E + + RI+LTMR +D +K++Q+ D
Sbjct: 719 EVDEKRKRIALTMRLTDSAPVAGAKVEQRGD 749
>gi|265985243|ref|ZP_06097978.1| RNA-binding S1 domain-containing protein [Brucella sp. 83/13]
gi|306838627|ref|ZP_07471463.1| RNA-binding S1 domain-containing protein [Brucella sp. NF 2653]
gi|264663835|gb|EEZ34096.1| RNA-binding S1 domain-containing protein [Brucella sp. 83/13]
gi|306406270|gb|EFM62513.1| RNA-binding S1 domain-containing protein [Brucella sp. NF 2653]
Length = 767
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 48/76 (63%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVHVS+L+D FVKD +V G VKVR+
Sbjct: 645 KDLKPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKVRV 704
Query: 203 IEANAETGRISLTMRE 218
E + RI LTMR+
Sbjct: 705 TEVDVPRKRIGLTMRK 720
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT F G D LEGTV N+ GAF+ + +
Sbjct: 614 VRDIIAELDKPGRDPRPEFKTATFADGIDDIKDLKPGMMLEGTVTNVAAFGAFVDIGVHQ 673
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRV--LRISRGQVTLTMKKE 334
+G + S+ +D + ++ G V VRV + + R ++ LTM+K+
Sbjct: 674 DGLVHVSQLADRFVKDPH--EVVKAGDVVKVRVTEVDVPRKRIGLTMRKD 721
>gi|386289499|ref|ZP_10066629.1| S1 RNA binding domain-containing protein [gamma proteobacterium
BDW918]
gi|385277562|gb|EIF41544.1| S1 RNA binding domain-containing protein [gamma proteobacterium
BDW918]
Length = 768
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 64/110 (58%), Gaps = 3/110 (2%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL P G V ++ FGAF+D G DGLVH+S L++ FVKD S+V G VKV
Sbjct: 641 KISDLEPDMILEGVVTNVTNFGAFVDIGVHQDGLVHISALANQFVKDPHSVVKAGDIVKV 700
Query: 201 RLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQ 250
+++E +A+ RI+L+MR D S +Q A +SG++ + + P Q
Sbjct: 701 KVMEVDAQRKRIALSMRLDDKASDVQA---ANSSGERRGGRNKPAAMPKQ 747
>gi|378581372|ref|ZP_09830019.1| putative transcriptional accessory protein [Pantoea stewartii
subsp. stewartii DC283]
gi|377815879|gb|EHT98987.1| putative transcriptional accessory protein [Pantoea stewartii
subsp. stewartii DC283]
Length = 774
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LSD FV D +V G VKV+++
Sbjct: 646 DLMPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVDDPHQVVKAGDIVKVKVM 705
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 706 EVDLQRKRIALTMR 719
>gi|407691683|ref|YP_006816472.1| transcriptional accessory protein [Actinobacillus suis H91-0380]
gi|407387740|gb|AFU18233.1| transcriptional accessory protein [Actinobacillus suis H91-0380]
Length = 779
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL G G V ++ FGAF+D G DGLVH+S LS++FV+D +V VG VKV++
Sbjct: 653 KDLKVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHKVVKVGNLVKVKV 712
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSK 247
+E + + RI+LTMR D + D ASG + R++T K
Sbjct: 713 LEVDVQRKRIALTMRLED------KPTDKPASGRNPQENRKNTEK 751
Score = 42.4 bits (98), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 15/102 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT F+ G + LEGTV N+ GAF+ + ++G + S
Sbjct: 631 KPGRDPRGEFKTATFMDGVEDIKDLKVGMILEGTVTNVANFGAFVDIGVHQDGLVHISML 690
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKED 335
S+ + ++VG V V+VL + R ++ LTM+ ED
Sbjct: 691 SNSFVED--PHKVVKVGNLVKVKVLEVDVQRKRIALTMRLED 730
>gi|150015329|ref|YP_001307583.1| RNA-binding S1 domain-containing protein [Clostridium beijerinckii
NCIMB 8052]
gi|149901794|gb|ABR32627.1| RNA binding S1 domain protein [Clostridium beijerinckii NCIMB 8052]
Length = 725
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 58/95 (61%), Gaps = 7/95 (7%)
Query: 134 KSEMPP-------VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVK 186
+ EMP ++ +DL PG G VR++ FGAF+D G DGLVH S++++ FVK
Sbjct: 627 REEMPKPILKTGIIELKDLKPGMVLAGTVRNVSDFGAFVDIGVHQDGLVHKSQMANRFVK 686
Query: 187 DVGSIVSVGQEVKVRLIEANAETGRISLTMRESDD 221
IV VG VKV ++E + + RISLTM++ D+
Sbjct: 687 HPLDIVKVGDIVKVAILEVDEKRKRISLTMKDIDE 721
>gi|403387500|ref|ZP_10929557.1| hypothetical protein CJC12_06614 [Clostridium sp. JC122]
Length = 720
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 53/80 (66%)
Query: 140 VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
V+ DL PG G VR++ FGAF+D G DGLVH+S+LSD FVK +V VG V+
Sbjct: 641 VEMSDLKPGMLLMGTVRNVSDFGAFVDIGVHQDGLVHISQLSDKFVKHPLDVVKVGDIVE 700
Query: 200 VRLIEANAETGRISLTMRES 219
V ++E + + RISL+M++S
Sbjct: 701 VSILEVDEKRKRISLSMKKS 720
Score = 38.9 bits (89), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP K ++ + G L GTV+N++ GAF+ + ++G + S+ SD
Sbjct: 625 RDPREELPKPIFKSGIVEMSDLKPGMLLMGTVRNVSDFGAFVDIGVHQDGLVHISQLSDK 684
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKK 333
+ + ++VG V V +L + R +++L+MKK
Sbjct: 685 FVKHPL--DVVKVGDIVEVSILEVDEKRKRISLSMKK 719
>gi|329297356|ref|ZP_08254692.1| putative transcriptional accessory protein [Plautia stali symbiont]
Length = 776
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LSD FV D +V G VKV+++
Sbjct: 646 DLLPGMVLEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVDDPHQVVKAGNIVKVKVM 705
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 706 EVDLQRKRIALTMR 719
Score = 40.4 bits (93), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 15/105 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT +F +G + LEGTV N+T GAF+ + ++G + S
Sbjct: 623 KPGRDPRPEFKTAQFAEGVETLNDLLPGMVLEGTVTNVTNFGAFVDIGVHQDGLVHISSL 682
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDDVG 338
SD + ++ G V V+V+ + R ++ LTM+ ++ G
Sbjct: 683 SDKFVDDPH--QVVKAGNIVKVKVMEVDLQRKRIALTMRLDEQPG 725
>gi|84386346|ref|ZP_00989374.1| hypothetical protein V12B01_02515 [Vibrio splendidus 12B01]
gi|84378770|gb|EAP95625.1| hypothetical protein V12B01_02515 [Vibrio splendidus 12B01]
Length = 776
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 63/111 (56%), Gaps = 2/111 (1%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L+D FV D +V G+ VKV+++
Sbjct: 647 DLEPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPHEVVKTGEIVKVKVM 706
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDE 254
E + + RI+L+MR D+ Q + +S + + S+ GQ+R E
Sbjct: 707 EVDVQRKRIALSMRMKDEPG--QDNRAQRSSAPRTQNRPNQNSQGGQRRRE 755
>gi|153008797|ref|YP_001370012.1| RNA-binding S1 domain-containing protein [Ochrobactrum anthropi
ATCC 49188]
gi|151560685|gb|ABS14183.1| RNA binding S1 domain protein [Ochrobactrum anthropi ATCC 49188]
Length = 769
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 48/76 (63%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVHVS+L+D FVKD +V G VKVR+
Sbjct: 647 KDLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKVRV 706
Query: 203 IEANAETGRISLTMRE 218
E + RI LTMR+
Sbjct: 707 TEVDVPRKRIGLTMRK 722
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT F G D LEGTV N+ GAF+ + +
Sbjct: 616 VRDIIAELDKPGRDPRPEFKTATFADGIDDIKDLKPGMVLEGTVTNVAAFGAFVDIGVHQ 675
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRV--LRISRGQVTLTMKKE 334
+G + S+ +D + ++ G V VRV + + R ++ LTM+K+
Sbjct: 676 DGLVHVSQLADRFVKDPH--EVVKAGDVVKVRVTEVDVPRKRIGLTMRKD 723
>gi|306841536|ref|ZP_07474234.1| RNA-binding S1 domain-containing protein [Brucella sp. BO2]
gi|306288373|gb|EFM59732.1| RNA-binding S1 domain-containing protein [Brucella sp. BO2]
Length = 767
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 48/76 (63%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVHVS+L+D FVKD +V G VKVR+
Sbjct: 645 KDLKPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKVRV 704
Query: 203 IEANAETGRISLTMRE 218
E + RI LTMR+
Sbjct: 705 TEVDVPRKRIGLTMRK 720
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT F G D LEGTV N+ GAF+ + +
Sbjct: 614 VRDIIAELDKPGRDPRPEFKTATFADGIDDIKDLKPGMMLEGTVTNVAAFGAFVDIGVHQ 673
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRV--LRISRGQVTLTMKKE 334
+G + S+ +D + ++ G V VRV + + R ++ LTM+K+
Sbjct: 674 DGLVHVSQLADRFVKDPH--EVVKAGDVVKVRVTEVDVPRKRIGLTMRKD 721
>gi|253987636|ref|YP_003038992.1| conserved hypothetical protein [Photorhabdus asymbiotica]
gi|253779086|emb|CAQ82246.1| conserved hypothetical protein [Photorhabdus asymbiotica]
Length = 784
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LSD FV D ++V G VKV+++
Sbjct: 656 DLRPGMVLEGSVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVADPHTVVKAGDIVKVKVL 715
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSK 247
E + RI+LTMR + + ++ + D+ RT R S+
Sbjct: 716 EVDLNRKRIALTMRLDEQPGETNSRRSSNPQADR-RTERNDRSR 758
Score = 42.7 bits (99), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 15/105 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT F +G + LEG+V N+T GAF+ + ++G + S
Sbjct: 633 KPGRDPRPEFKTATFAEGVETMNDLRPGMVLEGSVTNVTNFGAFVDIGVHQDGLVHISSL 692
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDDVG 338
SD A+ + ++ G V V+VL + +R ++ LTM+ ++ G
Sbjct: 693 SDRFVAD--PHTVVKAGDIVKVKVLEVDLNRKRIALTMRLDEQPG 735
>gi|150390386|ref|YP_001320435.1| RNA-binding S1 domain-containing protein [Alkaliphilus
metalliredigens QYMF]
gi|149950248|gb|ABR48776.1| RNA binding S1 domain protein [Alkaliphilus metalliredigens QYMF]
Length = 383
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 95/192 (49%), Gaps = 36/192 (18%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G G+V+ + FGAF+D G DGLVH+S LS VK+ +VSV +V+V++I+ +
Sbjct: 196 GMQIRGEVKRLTNFGAFVDIGGI-DGLVHISELSWGRVKNPSEVVSVEDQVEVKVIDFDE 254
Query: 208 ETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLE 267
TG++SL+++++ Q + T D KF G LE
Sbjct: 255 TTGKVSLSIKQT-------QPEPWTLIAD----------------------KFKAGDILE 285
Query: 268 GTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRIS---- 323
G V L GAF+ L G +G + S+ S+ A L VGQ V+V+VL I+
Sbjct: 286 GKVVRLVDFGAFVELMPGLDGLVHISQISEAHIAK--PSEELHVGQNVNVKVLDINIDGK 343
Query: 324 RGQVTLTMKKED 335
R +++T +ED
Sbjct: 344 RISLSMTAAQED 355
>gi|444376918|ref|ZP_21176156.1| Transcription accessory protein [Enterovibrio sp. AK16]
gi|443679043|gb|ELT85705.1| Transcription accessory protein [Enterovibrio sp. AK16]
Length = 779
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 51/79 (64%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DLIPG G + ++ FGAF+D G DGLVH+S LSD F+ D +V G VKV++
Sbjct: 646 KDLIPGMVLEGVITNVTNFGAFVDVGVHQDGLVHISALSDKFISDPREVVKAGDVVKVKV 705
Query: 203 IEANAETGRISLTMRESDD 221
+E + + RI L+MR SD+
Sbjct: 706 MEVDLQRKRIGLSMRLSDE 724
Score = 40.4 bits (93), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 15/108 (13%)
Query: 246 SKPGQK-RDEMKTTKF----------VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSE 294
+KPG+ R E KT F + G LEG + N+T GAF+ + ++G + S
Sbjct: 623 AKPGRDPRPEFKTATFADGVNEVKDLIPGMVLEGVITNVTNFGAFVDVGVHQDGLVHISA 682
Query: 295 ESDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDDVGSN 340
SD ++ ++ G V V+V+ + R ++ L+M+ D+ GS+
Sbjct: 683 LSDKFISDPR--EVVKAGDVVKVKVMEVDLQRKRIGLSMRLSDEPGSD 728
>gi|195941060|ref|ZP_03086442.1| hypothetical protein EscherichcoliO157_32501, partial [Escherichia
coli O157:H7 str. EC4024]
Length = 199
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 50/74 (67%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S L+D FV+D ++V G VKV+++
Sbjct: 70 DLLPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAGDIVKVKVL 129
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 130 EVDLQRKRIALTMR 143
>gi|384101489|ref|ZP_10002528.1| RNA binding protein [Rhodococcus imtechensis RKJ300]
gi|383841043|gb|EID80338.1| RNA binding protein [Rhodococcus imtechensis RKJ300]
Length = 787
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 61/112 (54%), Gaps = 2/112 (1%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K L PG T G V ++ FGAF+D G DGLVHVS +S NFVKD +V G VKV
Sbjct: 633 KVSHLKPGMTLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSHNFVKDPRDVVKSGDVVKV 692
Query: 201 RLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKR 252
+++E + RI LT+R D++ +K+ G R RR +P +R
Sbjct: 693 KVLEVDEARQRIGLTLRLDDEVGA--GRKNDGPRGGGQRPDRRGGGQPQDRR 742
>gi|312174095|emb|CBX82348.1| Protein yhgF [Erwinia amylovora ATCC BAA-2158]
Length = 777
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S L+D FV D +V G VKV+++
Sbjct: 647 DLLPGMVLEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDVVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 15/105 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT +F G D LEG+V N+T GAF+ + ++G + S
Sbjct: 624 KPGRDPRPEFKTAQFADGIDTLNDLLPGMVLEGSVTNVTNFGAFVDIGVHQDGLVHISSL 683
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDDVG 338
+D + ++ G V V+VL + R ++ LTM+ ++ G
Sbjct: 684 ADKFVDD--PHKVVKAGDVVKVKVLEVDLQRKRIALTMRLDEQPG 726
>gi|419964623|ref|ZP_14480577.1| RNA binding protein [Rhodococcus opacus M213]
gi|414570018|gb|EKT80757.1| RNA binding protein [Rhodococcus opacus M213]
Length = 777
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 61/112 (54%), Gaps = 2/112 (1%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K L PG T G V ++ FGAF+D G DGLVHVS +S NFVKD +V G VKV
Sbjct: 633 KVSHLKPGMTLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSHNFVKDPRDVVKSGDVVKV 692
Query: 201 RLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKR 252
+++E + RI LT+R D++ +K+ G R RR +P +R
Sbjct: 693 KVLEVDEARQRIGLTLRLDDEVG--AGRKNDGPRGGGQRPDRRGGGQPQDRR 742
>gi|223995143|ref|XP_002287255.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976371|gb|EED94698.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 398
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 109/205 (53%), Gaps = 28/205 (13%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL GA+ V++I +GAF+D GA +D LVHVSRLSD+FV +V +V G+++ VR++
Sbjct: 140 DLEIGASVEATVKTITAYGAFLDIGAKSDALVHVSRLSDDFVANVEDVVKAGEKITVRIV 199
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFV-- 261
+ E +I++TMR ++ +A+A+ R R S Q + + K +
Sbjct: 200 SVDTEKNQIAVTMR--------SEEAEASAARPTKRRERPQRSGADQT-SQAASIKAISD 250
Query: 262 KGQD----LEGTVKNLTRSGAFI-----SLPEGEE----GFLPTSEESDDGFANMMGGSS 308
KG D ++G V + GAF+ L EG E G + S ++ AN+ ++
Sbjct: 251 KGFDDSKFIDGEVVSTLAFGAFVRFDSAQLGEGLEGEVDGLVHISALAEGRTANVSDVAA 310
Query: 309 LQVGQEVSVRVLRI--SRGQVTLTM 331
VG +VSVRV + G+++L+M
Sbjct: 311 --VGDKVSVRVRSVEPEAGRISLSM 333
>gi|387770489|ref|ZP_10126669.1| Tex-like protein N-terminal domain protein [Pasteurella bettyae
CCUG 2042]
gi|386904300|gb|EIJ69096.1| Tex-like protein N-terminal domain protein [Pasteurella bettyae
CCUG 2042]
Length = 778
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 63/113 (55%), Gaps = 1/113 (0%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G + ++ FGAF+D G DGLVH+S LSD FV+D +V G VKV+++
Sbjct: 647 DLKPGMILEGTITNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGDVVKVKVL 706
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMK 256
E + RI+LTMR + K ++ D T S K R + GQ+++ +
Sbjct: 707 EVDVARRRIALTMRLDESAVKNSEKSDRTLSA-KSRQNDSQSRTNGQRQERAR 758
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 15/107 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT F+ G + LEGT+ N+T GAF+ + ++G + S
Sbjct: 624 KPGRDPRGEFKTATFMDGVEDITDLKPGMILEGTITNVTNFGAFVDIGVHQDGLVHISSL 683
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKEDDVGSN 340
SD + ++ G V V+VL ++R ++ LTM+ ++ N
Sbjct: 684 SDKFVED--PHQVVKTGDVVKVKVLEVDVARRRIALTMRLDESAVKN 728
>gi|336324431|ref|YP_004604398.1| Tex-like protein [Flexistipes sinusarabici DSM 4947]
gi|336108012|gb|AEI15830.1| Tex-like protein [Flexistipes sinusarabici DSM 4947]
Length = 704
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 53/77 (68%)
Query: 140 VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
+K EDL PG TGK+ ++ FGAF+D G DGLVH+S +++ F+K +VSVGQ V
Sbjct: 627 LKIEDLKPGMQLTGKISNVVDFGAFVDIGLKNDGLVHISEMAERFIKHPSEVVSVGQTVS 686
Query: 200 VRLIEANAETGRISLTM 216
++I+ + + GRISL++
Sbjct: 687 AKVIDVDKQRGRISLSL 703
>gi|227112180|ref|ZP_03825836.1| putative RNA binding protein [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 777
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S L+D+FV D +V G VKV+++
Sbjct: 646 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADHFVDDPHKVVKAGDIVKVKVM 705
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 706 EVDLQRKRIALTMR 719
>gi|167039140|ref|YP_001662125.1| RNA-binding S1 domain-containing protein [Thermoanaerobacter sp.
X514]
gi|300913270|ref|ZP_07130587.1| Tex-like protein [Thermoanaerobacter sp. X561]
gi|307723716|ref|YP_003903467.1| Tex-like protein [Thermoanaerobacter sp. X513]
gi|166853380|gb|ABY91789.1| RNA binding S1 domain protein [Thermoanaerobacter sp. X514]
gi|300889955|gb|EFK85100.1| Tex-like protein [Thermoanaerobacter sp. X561]
gi|307580777|gb|ADN54176.1| Tex-like protein protein-like protein [Thermoanaerobacter sp. X513]
Length = 712
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
+L PG G VR++ FG F+D G TDGLVH+S +S N++K +VSVG VKVR++
Sbjct: 639 ELKPGMELMGTVRNVTDFGCFVDIGVHTDGLVHISEMSQNYIKHPLDVVSVGDIVKVRVL 698
Query: 204 EANAETGRISLTMR 217
+ E RISL+M+
Sbjct: 699 SVDIERNRISLSMK 712
Score = 47.0 bits (110), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP + D M + G +L GTV+N+T G F+ + +G + SE S +
Sbjct: 619 RDPREDLPKPILRSDVMTINELKPGMELMGTVRNVTDFGCFVDIGVHTDGLVHISEMSQN 678
Query: 299 GFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMK 332
+ + S VG V VRVL I R +++L+MK
Sbjct: 679 YIKHPLDVVS--VGDIVKVRVLSVDIERNRISLSMK 712
>gi|149911351|ref|ZP_01899971.1| hypothetical protein PE36_23912 [Moritella sp. PE36]
gi|149805591|gb|EDM65594.1| hypothetical protein PE36_23912 [Moritella sp. PE36]
Length = 780
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 50/79 (63%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G + ++ FGAF+D G DGLVH+S L++ FVKD IV GQ VKV++
Sbjct: 647 DLKPGMQLEGIISNVTNFGAFVDIGVHQDGLVHISALTNRFVKDPHEIVKAGQIVKVKVT 706
Query: 204 EANAETGRISLTMRESDDI 222
E + RI+LTMR D++
Sbjct: 707 EIDIARKRIALTMRLDDEV 725
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 15/104 (14%)
Query: 247 KPGQK-RDEMKTTKFVKG----------QDLEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT F G LEG + N+T GAF+ + ++G + S
Sbjct: 624 KPGRDPRPEFKTATFKDGIEKITDLKPGMQLEGIISNVTNFGAFVDIGVHQDGLVHISAL 683
Query: 296 SDDGFANMMGGSSLQVGQEVSVRV--LRISRGQVTLTMKKEDDV 337
++ + ++ GQ V V+V + I+R ++ LTM+ +D+V
Sbjct: 684 TNRFVKD--PHEIVKAGQIVKVKVTEIDIARKRIALTMRLDDEV 725
>gi|159900230|ref|YP_001546477.1| RNA-binding S1 domain-containing protein [Herpetosiphon aurantiacus
DSM 785]
gi|159893269|gb|ABX06349.1| RNA binding S1 domain protein [Herpetosiphon aurantiacus DSM 785]
Length = 397
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 85/176 (48%), Gaps = 34/176 (19%)
Query: 124 AESRRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDN 183
A +R R ++K + E L PGA TG+V + PFGAFID G DGL H+S LS
Sbjct: 190 AAMQRWRQSQKERLL----ETLEPGAVVTGRVNQLTPFGAFIDLGG-ADGLAHISELSWQ 244
Query: 184 FVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRR 243
V ++ GQEV+V ++E + + RI L++R + Q D A+ D+
Sbjct: 245 RVNHPREVLQPGQEVQVYVLEVDRDRERIGLSLR--------RLQPDPWATIDQ------ 290
Query: 244 STSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDG 299
++ GQ + G V N+ G F+ + EG EG + SE +++G
Sbjct: 291 ---------------RYDLGQLIVGEVTNIAPFGVFVRVEEGVEGLIHASELTENG 331
>gi|292489911|ref|YP_003532801.1| hypothetical protein EAMY_3448 [Erwinia amylovora CFBP1430]
gi|292900947|ref|YP_003540316.1| transcription accessory protein [Erwinia amylovora ATCC 49946]
gi|428786893|ref|ZP_19004369.1| Protein yhgF [Erwinia amylovora ACW56400]
gi|291200795|emb|CBJ47929.1| putative transcription accessory protein [Erwinia amylovora ATCC
49946]
gi|291555348|emb|CBA23713.1| Protein yhgF [Erwinia amylovora CFBP1430]
gi|426274360|gb|EKV52102.1| Protein yhgF [Erwinia amylovora ACW56400]
Length = 777
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S L+D FV D +V G VKV+++
Sbjct: 647 DLLPGMVLEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDVVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 15/105 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT +F G D LEG+V N+T GAF+ + ++G + S
Sbjct: 624 KPGRDPRPEFKTAQFADGIDTLNDLLPGMVLEGSVTNVTNFGAFVDIGVHQDGLVHISSL 683
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDDVG 338
+D + ++ G V V+VL + R ++ LTM+ ++ G
Sbjct: 684 ADKFVDD--PHKVVKAGDVVKVKVLEVDLQRKRIALTMRLDEQPG 726
>gi|241663192|ref|YP_002981552.1| RNA binding S1 domain-containing protein [Ralstonia pickettii 12D]
gi|240865219|gb|ACS62880.1| RNA binding S1 domain protein [Ralstonia pickettii 12D]
Length = 788
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 56/95 (58%), Gaps = 3/95 (3%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAFI+ G DGLVHVS LS FV+D +V GQ VKV++
Sbjct: 666 KDLQPGMVLEGVVTNVAAFGAFINIGVHQDGLVHVSALSTKFVRDPHEVVKPGQIVKVKV 725
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDK 237
+E + + RI LTMR SD+ Q T GD+
Sbjct: 726 MEVDVKRNRIGLTMRLSDEPG---QTAARTGGGDR 757
>gi|434404363|ref|YP_007147248.1| transcriptional accessory protein [Cylindrospermum stagnale PCC
7417]
gi|428258618|gb|AFZ24568.1| transcriptional accessory protein [Cylindrospermum stagnale PCC
7417]
Length = 719
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL G G + ++ FGAF+D G DGLVH+S+L+D FV D IV VGQ VKVR++
Sbjct: 642 DLQVGMELEGMISNVANFGAFVDIGVHQDGLVHISQLADRFVDDPKKIVKVGQVVKVRVL 701
Query: 204 EANAETGRISLTMR 217
E N + RISL+M+
Sbjct: 702 EINEKLKRISLSMK 715
>gi|385786385|ref|YP_005817494.1| putative transcriptional accessory protein [Erwinia sp. Ejp617]
gi|310765657|gb|ADP10607.1| putative transcriptional accessory protein [Erwinia sp. Ejp617]
Length = 775
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S L+D FV D +V G VKV+++
Sbjct: 647 DLLPGMVLEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDVVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 15/105 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT +F G D LEG+V N+T GAF+ + ++G + S
Sbjct: 624 KPGRDPRPEFKTAQFADGIDTMNDLLPGMVLEGSVTNVTNFGAFVDIGVHQDGLVHISSL 683
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDDVG 338
+D + ++ G V V+VL + R ++ LTM+ ++ G
Sbjct: 684 ADKFVDD--PHKVVKAGDVVKVKVLEVDLQRKRIALTMRLDEQPG 726
>gi|167038148|ref|YP_001665726.1| RNA-binding S1 domain-containing protein [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320116557|ref|YP_004186716.1| Tex-like protein [Thermoanaerobacter brockii subsp. finnii Ako-1]
gi|166856982|gb|ABY95390.1| RNA binding S1 domain protein [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|319929648|gb|ADV80333.1| Tex-like protein [Thermoanaerobacter brockii subsp. finnii Ako-1]
Length = 712
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
+L PG G VR++ FG F+D G TDGLVH+S +S N++K +VSVG VKVR++
Sbjct: 639 ELKPGMELMGTVRNVTDFGCFVDIGVHTDGLVHISEMSQNYIKHPLDVVSVGDIVKVRVL 698
Query: 204 EANAETGRISLTMR 217
+ E RISL+M+
Sbjct: 699 SVDIERNRISLSMK 712
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP + D M + G +L GTV+N+T G F+ + +G + SE S +
Sbjct: 619 RDPREDLPKPILRSDVMTINELKPGMELMGTVRNVTDFGCFVDIGVHTDGLVHISEMSQN 678
Query: 299 GFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMK 332
+ + S VG V VRVL I R +++L+MK
Sbjct: 679 YIKHPLDVVS--VGDIVKVRVLSVDIERNRISLSMK 712
>gi|431412456|ref|ZP_19511891.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1630]
gi|431759344|ref|ZP_19547958.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E3346]
gi|430589411|gb|ELB27539.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E1630]
gi|430626144|gb|ELB62730.1| competence protein ComEA helix-hairpin-helix repeat region
[Enterococcus faecium E3346]
Length = 726
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 49/74 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG TG VR++ FGAF+D G DGLVH+S+LS FVK +VSVG V + +
Sbjct: 647 EDLKPGMELTGTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTIWI 706
Query: 203 IEANAETGRISLTM 216
+ + + GRISLTM
Sbjct: 707 EQVDTKKGRISLTM 720
>gi|404318598|ref|ZP_10966531.1| RNA-binding S1 domain-containing protein [Ochrobactrum anthropi
CTS-325]
Length = 767
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 48/76 (63%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVHVS+L+D FVKD +V G VKVR+
Sbjct: 645 KDLKPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKVRV 704
Query: 203 IEANAETGRISLTMRE 218
E + RI LTMR+
Sbjct: 705 TEVDVPRKRIGLTMRK 720
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT F G D LEGTV N+ GAF+ + +
Sbjct: 614 VRDIIAELDKPGRDPRPEFKTATFADGIDDIKDLKPGMMLEGTVTNVAAFGAFVDIGVHQ 673
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRV--LRISRGQVTLTMKKE 334
+G + S+ +D + ++ G V VRV + + R ++ LTM+K+
Sbjct: 674 DGLVHVSQLADRFVKDPH--EVVKAGDVVKVRVTEVDVPRKRIGLTMRKD 721
>gi|254473883|ref|ZP_05087277.1| transcription accessory protein [Pseudovibrio sp. JE062]
gi|211956993|gb|EEA92199.1| transcription accessory protein [Pseudovibrio sp. JE062]
Length = 818
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 49/76 (64%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVHVS+L+D FV D ++V G VKVR+
Sbjct: 667 QDLKPGMMLEGTVTNVTNFGAFVDIGVHQDGLVHVSQLADRFVDDPHTVVKAGDIVKVRV 726
Query: 203 IEANAETGRISLTMRE 218
+E + RI LTMR+
Sbjct: 727 VEVDIARKRIGLTMRK 742
Score = 42.7 bits (99), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 15/101 (14%)
Query: 247 KPGQK-RDEMKTTKFVKG----QDL------EGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT F G QDL EGTV N+T GAF+ + ++G + S+
Sbjct: 645 KPGRDPRPEFKTASFQDGVETMQDLKPGMMLEGTVTNVTNFGAFVDIGVHQDGLVHVSQL 704
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKE 334
+D + + ++ G V VRV+ I+R ++ LTM+K+
Sbjct: 705 ADRFVDDPH--TVVKAGDIVKVRVVEVDIARKRIGLTMRKD 743
>gi|403060344|ref|YP_006648561.1| RNA binding S1 domain-containing protein [Pectobacterium
carotovorum subsp. carotovorum PCC21]
gi|402807670|gb|AFR05308.1| RNA binding S1 domain protein [Pectobacterium carotovorum subsp.
carotovorum PCC21]
Length = 777
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S L+D+FV D +V G VKV+++
Sbjct: 646 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADHFVDDPHKVVKAGDIVKVKVM 705
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 706 EVDLQRKRIALTMR 719
>gi|259910055|ref|YP_002650411.1| transcriptional accessory protein [Erwinia pyrifoliae Ep1/96]
gi|387873054|ref|YP_005804441.1| protein yhgF [Erwinia pyrifoliae DSM 12163]
gi|224965677|emb|CAX57209.1| putative transcriptional accessory protein [Erwinia pyrifoliae
Ep1/96]
gi|283480154|emb|CAY76070.1| Protein yhgF [Erwinia pyrifoliae DSM 12163]
Length = 775
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S L+D FV D +V G VKV+++
Sbjct: 647 DLLPGMVLEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDVVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 15/105 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT +F G D LEG+V N+T GAF+ + ++G + S
Sbjct: 624 KPGRDPRPEFKTAQFADGIDTMNDLLPGMVLEGSVTNVTNFGAFVDIGVHQDGLVHISSL 683
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDDVG 338
+D + ++ G V V+VL + R ++ LTM+ ++ G
Sbjct: 684 ADKFVDD--PHKVVKAGDVVKVKVLEVDLQRKRIALTMRLDEQPG 726
>gi|194098874|ref|YP_002001938.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae NCCP11945]
gi|193934164|gb|ACF29988.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae NCCP11945]
Length = 584
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 96/193 (49%), Gaps = 33/193 (17%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E+L G+ G V++I +GAF+D G DGL+H++ L+ VK ++ VGQEV+ ++
Sbjct: 211 ENLQEGSVIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKV 269
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
++ + E R+SL M+ Q + SG TRR + +
Sbjct: 270 LKFDQEKQRVSLGMK---------QLGEDPWSG----LTRR----------------YPQ 300
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
L G V NLT GAF+ + +G EG + S E D N+ +Q+G EV V +L I
Sbjct: 301 ATRLFGKVSNLTDYGAFVEIEQGIEGLVHVS-EMDWTNKNVHPSKVVQLGDEVEVMILEI 359
Query: 323 SRG--QVTLTMKK 333
G +++L MK+
Sbjct: 360 DEGRRRISLGMKQ 372
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 46/197 (23%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS-----DNFVKDVGSIVSVGQEVKVRL 202
G +G V+SI FG F+ DGLVH+S LS + V+ G+EV+ +
Sbjct: 388 GDKISGAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKK----GEEVEAVV 443
Query: 203 IEANAETGRISLTMR--ESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKF 260
+ + E RISL ++ E D D
Sbjct: 444 LAIDVEKERISLGIKQLEGDPFGNFISVND------------------------------ 473
Query: 261 VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVL 320
KG ++G+VK++ GA I+L + EG+LP SE + D ++ + L+ G EV ++
Sbjct: 474 -KGSLVKGSVKSVDAKGAVIALSDEVEGYLPASEFAADRVEDLT--TKLKEGDEVEAVIV 530
Query: 321 RISRGQ--VTLTMKKED 335
+ R + L++K +D
Sbjct: 531 TVDRKNRSIKLSVKAKD 547
>gi|15613094|ref|NP_241397.1| hypothetical protein BH0531 [Bacillus halodurans C-125]
gi|10173144|dbj|BAB04250.1| BH0531 [Bacillus halodurans C-125]
Length = 728
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 89/178 (50%), Gaps = 17/178 (9%)
Query: 58 FSQFQSGSALQHKSALHIISATGINVAVEESDSPAADDDSAGASDIPSDVETSESSSIKS 117
F + G L +A+H S + + E + AAD G D+ ++ + S++ +
Sbjct: 551 FLRIMDGDNLLDATAIHPESYKVTDKLLSEVGATAAD---VGIEDLKKKLQALDVSAMAA 607
Query: 118 E---ASPTL-----AESRRSRTARKSEMPPV------KNEDLIPGATFTGKVRSIQPFGA 163
PTL A R +R R P+ + EDL+PG G VR++ FG
Sbjct: 608 TLDVGVPTLKDMIDALIRPTRDPRDEVAKPLLKQDVLQLEDLLPGMELQGTVRNVVDFGV 667
Query: 164 FIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDD 221
F+D G DGLVH+S+L++ ++K +V+VG+ V V + + + + GRI+LTM +D
Sbjct: 668 FVDIGVKQDGLVHISKLANRYIKHPLEVVTVGEIVTVWVEDVDIKKGRIALTMLRPED 725
Score = 45.8 bits (107), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 55/100 (55%), Gaps = 4/100 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R +KP K+D ++ + G +L+GTV+N+ G F+ + ++G + S+ ++
Sbjct: 628 RDPRDEVAKPLLKQDVLQLEDLLPGMELQGTVRNVVDFGVFVDIGVKQDGLVHISKLANR 687
Query: 299 GFANMMGGSSLQVGQEVSVRV--LRISRGQVTLTMKKEDD 336
+ + + VG+ V+V V + I +G++ LTM + +D
Sbjct: 688 YIKHPL--EVVTVGEIVTVWVEDVDIKKGRIALTMLRPED 725
>gi|227329718|ref|ZP_03833742.1| putative RNA binding protein [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 777
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S L+D+FV D +V G VKV+++
Sbjct: 646 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADHFVDDPHKVVKAGDIVKVKVM 705
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 706 EVDLQRKRIALTMR 719
>gi|416348672|ref|ZP_11680430.1| S1 RNA-binding domain-containing protein [Clostridium botulinum C
str. Stockholm]
gi|338196744|gb|EGO88925.1| S1 RNA-binding domain-containing protein [Clostridium botulinum C
str. Stockholm]
Length = 718
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 50/68 (73%)
Query: 151 FTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETG 210
TG VR++ FGAF+D G DGLVH+S+LSD FVK+ IV VG V+VR++E + + G
Sbjct: 651 LTGTVRNVADFGAFVDIGVHQDGLVHISQLSDKFVKNPLDIVKVGDIVEVRVLEVDEKRG 710
Query: 211 RISLTMRE 218
RISL+M++
Sbjct: 711 RISLSMKK 718
Score = 46.6 bits (109), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 15/104 (14%)
Query: 243 RSTSKPGQK-RDEMKTTKFVKG----------QDLEGTVKNLTRSGAFISLPEGEEGFLP 291
+ KPG+ R+E+ F KG L GTV+N+ GAF+ + ++G +
Sbjct: 617 KEIKKPGRDPREELPKPIFKKGIVDINQLKTDMILTGTVRNVADFGAFVDIGVHQDGLVH 676
Query: 292 TSEESDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKK 333
S+ SD N + ++VG V VRVL + RG+++L+MKK
Sbjct: 677 ISQLSDKFVKNPL--DIVKVGDIVEVRVLEVDEKRGRISLSMKK 718
>gi|290512012|ref|ZP_06551380.1| transcription accessory protein (S1 RNA-binding domain) [Klebsiella
sp. 1_1_55]
gi|289775802|gb|EFD83802.1| transcription accessory protein (S1 RNA-binding domain) [Klebsiella
sp. 1_1_55]
Length = 776
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LSD FV+D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHTVVKAGDIVKVKVM 706
Query: 204 EANAETGRISLTMR 217
E + RI+LTMR
Sbjct: 707 EVDLPRKRIALTMR 720
Score = 40.0 bits (92), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 15/105 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT KF G + LEG V N+T GAF+ + ++G + S
Sbjct: 624 KPGRDPRPEFKTAKFADGVETMSDLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSL 683
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKKEDDVG 338
SD + + ++ G V V+V+ + R ++ LTM+ ++ G
Sbjct: 684 SDRFVED--PHTVVKAGDIVKVKVMEVDLPRKRIALTMRLDEQPG 726
>gi|90581399|ref|ZP_01237194.1| hypothetical protein VAS14_21752 [Photobacterium angustum S14]
gi|90437376|gb|EAS62572.1| hypothetical protein VAS14_21752 [Vibrio angustum S14]
Length = 774
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 51/79 (64%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DLIPG G + ++ FGAF+D G DGLVH+S LSD FV D +V G VKV++
Sbjct: 646 KDLIPGMVLEGVITNVTNFGAFVDVGVHQDGLVHISALSDKFVSDPREVVKAGDIVKVKV 705
Query: 203 IEANAETGRISLTMRESDD 221
+E + + RI ++MR SD+
Sbjct: 706 MEVDLQRKRIGMSMRLSDE 724
>gi|323497028|ref|ZP_08102051.1| transcription accessory protein [Vibrio sinaloensis DSM 21326]
gi|323317872|gb|EGA70860.1| transcription accessory protein [Vibrio sinaloensis DSM 21326]
Length = 775
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 64/112 (57%), Gaps = 5/112 (4%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L+D +V D +V G VKV+++
Sbjct: 647 DLEPGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDKYVSDPREVVKAGDIVKVKVM 706
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKP-GQKRDE 254
E + + RI L+MR +D+ + + + A A R +R KP GQ+R E
Sbjct: 707 EVDVQRKRIGLSMRLNDEPGQDNRAQRAPAP----RGQQRQGHKPGGQRRRE 754
>gi|288933208|ref|YP_003437267.1| Tex-like protein [Klebsiella variicola At-22]
gi|288887937|gb|ADC56255.1| Tex-like protein protein-like protein [Klebsiella variicola At-22]
Length = 776
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LSD FV+D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHTVVKAGDIVKVKVM 706
Query: 204 EANAETGRISLTMR 217
E + RI+LTMR
Sbjct: 707 EVDLPRKRIALTMR 720
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 15/105 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT KF G + LEG V N+T GAF+ + ++G + S
Sbjct: 624 KPGRDPRPEFKTAKFADGVETMNDLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSL 683
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKKEDDVG 338
SD + + ++ G V V+V+ + R ++ LTM+ ++ G
Sbjct: 684 SDRFVED--PHTVVKAGDIVKVKVMEVDLPRKRIALTMRLDEQPG 726
>gi|253681106|ref|ZP_04861909.1| S1 RNA binding domain protein [Clostridium botulinum D str. 1873]
gi|253562955|gb|EES92401.1| S1 RNA binding domain protein [Clostridium botulinum D str. 1873]
Length = 718
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 50/68 (73%)
Query: 151 FTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETG 210
TG VR++ FGAF+D G DGLVH+S+LSD FVK+ IV VG V+VR++E + + G
Sbjct: 651 LTGTVRNVADFGAFVDIGVHQDGLVHISQLSDKFVKNPLDIVKVGDIVEVRVLEVDEKRG 710
Query: 211 RISLTMRE 218
RISL+M++
Sbjct: 711 RISLSMKK 718
Score = 46.6 bits (109), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 15/104 (14%)
Query: 243 RSTSKPGQK-RDEMKTTKFVKG----------QDLEGTVKNLTRSGAFISLPEGEEGFLP 291
+ KPG+ R+E+ F KG L GTV+N+ GAF+ + ++G +
Sbjct: 617 KEIKKPGRDPREELPKPIFKKGIVDINQLKTDMILTGTVRNVADFGAFVDIGVHQDGLVH 676
Query: 292 TSEESDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKK 333
S+ SD N + ++VG V VRVL + RG+++L+MKK
Sbjct: 677 ISQLSDKFVKNPL--DIVKVGDIVEVRVLEVDEKRGRISLSMKK 718
>gi|77361757|ref|YP_341332.1| hypothetical protein PSHAa2854 [Pseudoalteromonas haloplanktis
TAC125]
gi|76876668|emb|CAI87890.1| conserved protein with nucleic acid-binding protein-like domain
(Transcriptional accessory protein) [Pseudoalteromonas
haloplanktis TAC125]
Length = 774
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAF+D G DGLVH+S +++ F+ D +V G VKV
Sbjct: 642 KISDLKPGMILEGVVSNVANFGAFVDVGVHQDGLVHISSITNKFISDPREVVKAGDIVKV 701
Query: 201 RLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQ-KRD 253
+++E +A RIS TMR DDI K A + K R S + + KRD
Sbjct: 702 KVVEVDAARKRISFTMRLDDDID--TSNKPAAPAAQKPRANNNSQPRAAKPKRD 753
>gi|206576501|ref|YP_002236221.1| S1 RNA binding domain-containing protein [Klebsiella pneumoniae
342]
gi|206565559|gb|ACI07335.1| S1 RNA binding domain protein [Klebsiella pneumoniae 342]
Length = 776
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LSD FV+D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHTVVKAGDIVKVKVM 706
Query: 204 EANAETGRISLTMR 217
E + RI+LTMR
Sbjct: 707 EVDLPRKRIALTMR 720
Score = 40.0 bits (92), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 15/105 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT KF G + LEG V N+T GAF+ + ++G + S
Sbjct: 624 KPGRDPRPEFKTAKFADGVETMNDLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSL 683
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKKEDDVG 338
SD + + ++ G V V+V+ + R ++ LTM+ ++ G
Sbjct: 684 SDRFVED--PHTVVKAGDIVKVKVMEVDLPRKRIALTMRLDEQPG 726
>gi|304309783|ref|YP_003809381.1| transcriptional accessory protein [gamma proteobacterium HdN1]
gi|301795516|emb|CBL43714.1| predicted transcriptional accessory protein [gamma proteobacterium
HdN1]
Length = 787
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 52/83 (62%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG T G V ++ FGAF+D G DGLVH+S LSD FVKD +V G VKV++
Sbjct: 644 EDLKPGMTLEGCVTNVTNFGAFVDIGVHQDGLVHISVLSDKFVKDPHEVVKAGDIVKVKV 703
Query: 203 IEANAETGRISLTMRESDDISKL 225
+E + RI L+MR + + ++
Sbjct: 704 VEIDIPRKRIGLSMRMDEPVGQV 726
>gi|378981088|ref|YP_005229229.1| hypothetical protein KPHS_49290 [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|419973703|ref|ZP_14489126.1| putative transcriptional accessory protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH1]
gi|419979095|ref|ZP_14494388.1| putative transcriptional accessory protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH2]
gi|419984570|ref|ZP_14499716.1| putative transcriptional accessory protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH4]
gi|419990399|ref|ZP_14505371.1| putative transcriptional accessory protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH5]
gi|419996621|ref|ZP_14511422.1| putative transcriptional accessory protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH6]
gi|420002569|ref|ZP_14517220.1| putative transcriptional accessory protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH7]
gi|420008587|ref|ZP_14523076.1| putative transcriptional accessory protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH8]
gi|420014466|ref|ZP_14528772.1| putative transcriptional accessory protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH9]
gi|420019862|ref|ZP_14534053.1| putative transcriptional accessory protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH10]
gi|420025486|ref|ZP_14539494.1| putative transcriptional accessory protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH11]
gi|420033579|ref|ZP_14547382.1| putative transcriptional accessory protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH12]
gi|420037278|ref|ZP_14550933.1| putative transcriptional accessory protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH14]
gi|420042859|ref|ZP_14556350.1| putative transcriptional accessory protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH16]
gi|420048687|ref|ZP_14561999.1| putative transcriptional accessory protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH17]
gi|420054520|ref|ZP_14567693.1| putative transcriptional accessory protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH18]
gi|420059162|ref|ZP_14572171.1| putative transcriptional accessory protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH19]
gi|420065725|ref|ZP_14578529.1| putative transcriptional accessory protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH20]
gi|420070642|ref|ZP_14583293.1| putative transcriptional accessory protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH21]
gi|420079023|ref|ZP_14591474.1| putative transcriptional accessory protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH22]
gi|420082199|ref|ZP_14594499.1| putative transcriptional accessory protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH23]
gi|428938814|ref|ZP_19011935.1| transcriptional accessory protein [Klebsiella pneumoniae VA360]
gi|364520499|gb|AEW63627.1| hypothetical protein KPHS_49290 [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|397347593|gb|EJJ40699.1| putative transcriptional accessory protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH1]
gi|397349915|gb|EJJ43006.1| putative transcriptional accessory protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH2]
gi|397354231|gb|EJJ47293.1| putative transcriptional accessory protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH4]
gi|397364668|gb|EJJ57297.1| putative transcriptional accessory protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH6]
gi|397367138|gb|EJJ59751.1| putative transcriptional accessory protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH5]
gi|397370987|gb|EJJ63541.1| putative transcriptional accessory protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH7]
gi|397378002|gb|EJJ70221.1| putative transcriptional accessory protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH9]
gi|397383180|gb|EJJ75328.1| putative transcriptional accessory protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH8]
gi|397388653|gb|EJJ80621.1| putative transcriptional accessory protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH10]
gi|397394683|gb|EJJ86406.1| putative transcriptional accessory protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH12]
gi|397396935|gb|EJJ88617.1| putative transcriptional accessory protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH11]
gi|397405570|gb|EJJ97026.1| putative transcriptional accessory protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH14]
gi|397414650|gb|EJK05846.1| putative transcriptional accessory protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH17]
gi|397415261|gb|EJK06447.1| putative transcriptional accessory protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH16]
gi|397422913|gb|EJK13862.1| putative transcriptional accessory protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH18]
gi|397430995|gb|EJK21678.1| putative transcriptional accessory protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH20]
gi|397436029|gb|EJK26631.1| putative transcriptional accessory protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH19]
gi|397441552|gb|EJK31925.1| putative transcriptional accessory protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH21]
gi|397444141|gb|EJK34428.1| putative transcriptional accessory protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH22]
gi|397452411|gb|EJK42481.1| putative transcriptional accessory protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH23]
gi|426304986|gb|EKV67117.1| transcriptional accessory protein [Klebsiella pneumoniae VA360]
Length = 776
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LSD FV+D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHTVVKAGDIVKVKVM 706
Query: 204 EANAETGRISLTMR 217
E + RI+LTMR
Sbjct: 707 EVDLPRKRIALTMR 720
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 15/105 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT KF G + LEG V N+T GAF+ + ++G + S
Sbjct: 624 KPGRDPRPEFKTAKFADGVETMNDLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSL 683
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKKEDDVG 338
SD + + ++ G V V+V+ + R ++ LTM+ ++ G
Sbjct: 684 SDRFVED--PHTVVKAGDIVKVKVMEVDLPRKRIALTMRLDEQPG 726
>gi|424852004|ref|ZP_18276401.1| RNA binding protein [Rhodococcus opacus PD630]
gi|356666669|gb|EHI46740.1| RNA binding protein [Rhodococcus opacus PD630]
Length = 777
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 61/112 (54%), Gaps = 2/112 (1%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K L PG T G V ++ FGAF+D G DGLVHVS +S NFVKD +V G V+V
Sbjct: 633 KVSHLKPGMTLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSHNFVKDPRDVVKSGDVVRV 692
Query: 201 RLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKR 252
+++E + RI LT+R D++ +K+ G R RR +P +R
Sbjct: 693 KVLEVDEARQRIGLTLRLDDEVGA--GRKNDGPRGGGQRQDRRGGGQPQDRR 742
>gi|152972285|ref|YP_001337431.1| hypothetical protein KPN_03777 [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|262045243|ref|ZP_06018269.1| YhgF like protein [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
gi|419765010|ref|ZP_14291249.1| Tex-like protein [Klebsiella pneumoniae subsp. pneumoniae DSM
30104]
gi|424931412|ref|ZP_18349784.1| Putative transcriptional accessory protein [Klebsiella pneumoniae
subsp. pneumoniae KpQ3]
gi|425083553|ref|ZP_18486650.1| protein yhgF [Klebsiella pneumoniae subsp. pneumoniae WGLW2]
gi|425093668|ref|ZP_18496752.1| protein yhgF [Klebsiella pneumoniae subsp. pneumoniae WGLW5]
gi|428931670|ref|ZP_19005262.1| transcriptional accessory protein [Klebsiella pneumoniae JHCK1]
gi|449046850|ref|ZP_21730635.1| transcriptional accessory protein [Klebsiella pneumoniae hvKP1]
gi|150957134|gb|ABR79164.1| hypothetical protein KPN_03777 [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|259037453|gb|EEW38698.1| YhgF like protein [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
gi|397742138|gb|EJK89357.1| Tex-like protein [Klebsiella pneumoniae subsp. pneumoniae DSM
30104]
gi|405598754|gb|EKB71956.1| protein yhgF [Klebsiella pneumoniae subsp. pneumoniae WGLW2]
gi|405610643|gb|EKB83438.1| protein yhgF [Klebsiella pneumoniae subsp. pneumoniae WGLW5]
gi|407805599|gb|EKF76850.1| Putative transcriptional accessory protein [Klebsiella pneumoniae
subsp. pneumoniae KpQ3]
gi|426307834|gb|EKV69908.1| transcriptional accessory protein [Klebsiella pneumoniae JHCK1]
gi|448877603|gb|EMB12564.1| transcriptional accessory protein [Klebsiella pneumoniae hvKP1]
Length = 776
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LSD FV+D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHTVVKAGDIVKVKVM 706
Query: 204 EANAETGRISLTMR 217
E + RI+LTMR
Sbjct: 707 EVDLPRKRIALTMR 720
Score = 40.0 bits (92), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 15/105 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT KF G + LEG V N+T GAF+ + ++G + S
Sbjct: 624 KPGRDPRPEFKTAKFADGVETMNDLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSL 683
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKKEDDVG 338
SD + + ++ G V V+V+ + R ++ LTM+ ++ G
Sbjct: 684 SDRFVED--PHTVVKAGDIVKVKVMEVDLPRKRIALTMRLDEQPG 726
>gi|330012471|ref|ZP_08307385.1| Tex-like protein [Klebsiella sp. MS 92-3]
gi|386036912|ref|YP_005956825.1| putative transcriptional accessory protein [Klebsiella pneumoniae
KCTC 2242]
gi|424832747|ref|ZP_18257475.1| S1 RNA binding domain protein [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|328533822|gb|EGF60501.1| Tex-like protein [Klebsiella sp. MS 92-3]
gi|339764040|gb|AEK00261.1| putative transcriptional accessory protein [Klebsiella pneumoniae
KCTC 2242]
gi|414710191|emb|CCN31895.1| S1 RNA binding domain protein [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
Length = 776
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LSD FV+D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHTVVKAGDIVKVKVM 706
Query: 204 EANAETGRISLTMR 217
E + RI+LTMR
Sbjct: 707 EVDLPRKRIALTMR 720
Score = 40.0 bits (92), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 15/105 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT KF G + LEG V N+T GAF+ + ++G + S
Sbjct: 624 KPGRDPRPEFKTAKFADGVETMNDLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSL 683
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKKEDDVG 338
SD + + ++ G V V+V+ + R ++ LTM+ ++ G
Sbjct: 684 SDRFVED--PHTVVKAGDIVKVKVMEVDLPRKRIALTMRLDEQPG 726
>gi|168070622|ref|XP_001786877.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162660263|gb|EDQ48309.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 398
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 51/78 (65%)
Query: 140 VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
+K EDL PG G VR++ FGAF+D G +DGLVH+S+LS +VK +VSVG V
Sbjct: 315 LKIEDLTPGMELQGTVRNVIDFGAFVDIGIKSDGLVHISQLSSGYVKHPMDVVSVGDNVT 374
Query: 200 VRLIEANAETGRISLTMR 217
V ++ + + GR+ LTMR
Sbjct: 375 VWVLNVDLKKGRVGLTMR 392
Score = 43.1 bits (100), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R P + D +K G +L+GTV+N+ GAF+ + +G + S+ S
Sbjct: 299 RDPREELPLPIFRTDVLKIEDLTPGMELQGTVRNVIDFGAFVDIGIKSDGLVHISQLSSG 358
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMK 332
+ M + VG V+V VL + +G+V LTM+
Sbjct: 359 YVKHPM--DVVSVGDNVTVWVLNVDLKKGRVGLTMR 392
>gi|365140717|ref|ZP_09346696.1| protein yhgF [Klebsiella sp. 4_1_44FAA]
gi|425074503|ref|ZP_18477606.1| protein yhgF [Klebsiella pneumoniae subsp. pneumoniae WGLW1]
gi|425085139|ref|ZP_18488232.1| protein yhgF [Klebsiella pneumoniae subsp. pneumoniae WGLW3]
gi|363653373|gb|EHL92343.1| protein yhgF [Klebsiella sp. 4_1_44FAA]
gi|405595968|gb|EKB69338.1| protein yhgF [Klebsiella pneumoniae subsp. pneumoniae WGLW1]
gi|405608554|gb|EKB81505.1| protein yhgF [Klebsiella pneumoniae subsp. pneumoniae WGLW3]
Length = 776
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LSD FV+D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHTVVKAGDIVKVKVM 706
Query: 204 EANAETGRISLTMR 217
E + RI+LTMR
Sbjct: 707 EVDLPRKRIALTMR 720
Score = 40.0 bits (92), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 15/105 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT KF G + LEG V N+T GAF+ + ++G + S
Sbjct: 624 KPGRDPRPEFKTAKFADGVETMNDLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSL 683
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKKEDDVG 338
SD + + ++ G V V+V+ + R ++ LTM+ ++ G
Sbjct: 684 SDRFVED--PHTVVKAGDIVKVKVMEVDLPRKRIALTMRLDEQPG 726
>gi|421911922|ref|ZP_16341667.1| Transcription accessory protein (S1 RNA-binding domain) [Klebsiella
pneumoniae subsp. pneumoniae ST258-K26BO]
gi|421914335|ref|ZP_16343984.1| Transcription accessory protein (S1 RNA-binding domain) [Klebsiella
pneumoniae subsp. pneumoniae ST258-K28BO]
gi|410114124|emb|CCM84292.1| Transcription accessory protein (S1 RNA-binding domain) [Klebsiella
pneumoniae subsp. pneumoniae ST258-K26BO]
gi|410123483|emb|CCM86609.1| Transcription accessory protein (S1 RNA-binding domain) [Klebsiella
pneumoniae subsp. pneumoniae ST258-K28BO]
Length = 778
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LSD FV+D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHTVVKAGDIVKVKVM 706
Query: 204 EANAETGRISLTMR 217
E + RI+LTMR
Sbjct: 707 EVDLPRKRIALTMR 720
Score = 40.0 bits (92), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 15/105 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT KF G + LEG V N+T GAF+ + ++G + S
Sbjct: 624 KPGRDPRPEFKTAKFADGVETMNDLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSL 683
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKKEDDVG 338
SD + + ++ G V V+V+ + R ++ LTM+ ++ G
Sbjct: 684 SDRFVED--PHTVVKAGDIVKVKVMEVDLPRKRIALTMRLDEQPG 726
>gi|238896874|ref|YP_002921619.1| hypothetical protein KP1_5108 [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|402778631|ref|YP_006634177.1| transcription accessory protein [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|238549201|dbj|BAH65552.1| hypothetical protein KP1_5108 [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|402539589|gb|AFQ63738.1| Transcription accessory protein (S1 RNA-binding domain) [Klebsiella
pneumoniae subsp. pneumoniae 1084]
Length = 776
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LSD FV+D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHTVVKAGDIVKVKVM 706
Query: 204 EANAETGRISLTMR 217
E + RI+LTMR
Sbjct: 707 EVDLPRKRIALTMR 720
Score = 40.0 bits (92), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 15/105 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT KF G + LEG V N+T GAF+ + ++G + S
Sbjct: 624 KPGRDPRPEFKTAKFADGVETMNDLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSL 683
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKKEDDVG 338
SD + + ++ G V V+V+ + R ++ LTM+ ++ G
Sbjct: 684 SDRFVED--PHTVVKAGDIVKVKVMEVDLPRKRIALTMRLDEQPG 726
>gi|271502330|ref|YP_003335356.1| Tex-like protein [Dickeya dadantii Ech586]
gi|270345885|gb|ACZ78650.1| Tex-like protein [Dickeya dadantii Ech586]
Length = 779
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LSD FV+D +V G VKV+++
Sbjct: 646 DLTPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHQVVKAGDIVKVKVL 705
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 706 EVDLQRKRIALTMR 719
>gi|227545200|ref|ZP_03975249.1| S1 domain RNA-binding protein [Lactobacillus reuteri CF48-3A]
gi|338203844|ref|YP_004649989.1| YhgF-like protein [Lactobacillus reuteri SD2112]
gi|227184809|gb|EEI64880.1| S1 domain RNA-binding protein [Lactobacillus reuteri CF48-3A]
gi|336449084|gb|AEI57699.1| YhgF like protein [Lactobacillus reuteri SD2112]
Length = 727
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 83/163 (50%), Gaps = 15/163 (9%)
Query: 69 HKSALHIISATGINVAVEESDSPAADDDSAGASDIPSDVETSESSSIKSEASPTLAESRR 128
++ A II A GINV +E +P+ADD DV+ + +E + S +
Sbjct: 570 YQVAEKIIQAAGINV--DELGTPSADDKLKKI-----DVKQFTDDQVGTETVTDIISSLQ 622
Query: 129 S--RTARKSEMPPVKN------EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRL 180
R R S P+ EDL PG G VR++ FG F+D G DGLVHVS++
Sbjct: 623 KPGRDLRDSMPAPLLRHDVMTIEDLKPGMKLQGTVRNVVDFGVFVDIGVKHDGLVHVSKM 682
Query: 181 SDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDIS 223
S F++D ++V+VG V V + + + + RI LTM E + ++
Sbjct: 683 SKQFIRDPRAMVAVGDIVDVWIDDVDLKRQRIQLTMLEPETVT 725
>gi|427430361|ref|ZP_18920215.1| Transcription accessory protein [Caenispirillum salinarum AK4]
gi|425878821|gb|EKV27532.1| Transcription accessory protein [Caenispirillum salinarum AK4]
Length = 792
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 50/78 (64%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVHVS L+D FVKD +V G VKV++
Sbjct: 646 KDLKPGMLLEGVVSNVANFGAFVDIGVHQDGLVHVSALADRFVKDPREVVKPGDIVKVKV 705
Query: 203 IEANAETGRISLTMRESD 220
+E + RISLTMR SD
Sbjct: 706 LEVDLPRKRISLTMRLSD 723
>gi|375307535|ref|ZP_09772822.1| tex protein [Paenibacillus sp. Aloe-11]
gi|375079866|gb|EHS58087.1| tex protein [Paenibacillus sp. Aloe-11]
Length = 740
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 76/138 (55%), Gaps = 12/138 (8%)
Query: 92 AADDDSAGASDIPSDVETSESSSIKSEAS-PTLAESRRS--RTAR--KSEMP-PV----- 140
+A D A++ ++ + E ++K E PTL + S R R + E+P PV
Sbjct: 594 SAHDLGTKAAEQALNISSIEQLAVKLEVGVPTLRDILESLQRPGRDPRDELPLPVFRKDV 653
Query: 141 -KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
K EDL PG G VR++ FGAF+D G +DGLVH+S+L FVK +VSVG V
Sbjct: 654 LKIEDLAPGMELQGTVRNVIDFGAFVDIGIKSDGLVHISQLRSGFVKHPMDVVSVGDNVT 713
Query: 200 VRLIEANAETGRISLTMR 217
V ++ + + GR+ LTM+
Sbjct: 714 VWVLNVDLKKGRVGLTMK 731
Score = 42.4 bits (98), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R P ++D +K G +L+GTV+N+ GAF+ + +G + S+
Sbjct: 638 RDPRDELPLPVFRKDVLKIEDLAPGMELQGTVRNVIDFGAFVDIGIKSDGLVHISQLRSG 697
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMK 332
+ M + VG V+V VL + +G+V LTMK
Sbjct: 698 FVKHPM--DVVSVGDNVTVWVLNVDLKKGRVGLTMK 731
>gi|359445526|ref|ZP_09235257.1| protein yhgF [Pseudoalteromonas sp. BSi20439]
gi|358040637|dbj|GAA71506.1| protein yhgF [Pseudoalteromonas sp. BSi20439]
Length = 774
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAF+D G DGLVH+S +++ F+ D +V G VKV
Sbjct: 642 KISDLKPGMILEGVVSNVANFGAFVDVGVHQDGLVHISAITNKFISDPREVVKAGDIVKV 701
Query: 201 RLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRS-TSKPGQKRD 253
+++E +A RIS TMR D+I K A A+ K R+ + T P KRD
Sbjct: 702 KVVEVDAARKRISFTMRLDDEID--TSNKAAPAAPQKPRSNNANQTRAPKPKRD 753
>gi|300703935|ref|YP_003745537.1| transcriptional accessory protein [Ralstonia solanacearum CFBP2957]
gi|299071598|emb|CBJ42922.1| transcriptional accessory protein [Ralstonia solanacearum CFBP2957]
Length = 780
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 49/77 (63%)
Query: 145 LIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIE 204
L PG G V ++ FGAFID G DGLVHVS LS FV+D +V GQ VKV+++E
Sbjct: 661 LQPGMVLEGVVTNVAAFGAFIDIGVHQDGLVHVSALSTKFVRDPHEVVKPGQIVKVKVME 720
Query: 205 ANAETGRISLTMRESDD 221
+ + RI LTMR SD+
Sbjct: 721 VDVKRNRIGLTMRLSDE 737
>gi|221633021|ref|YP_002522246.1| 30S ribosomal protein S1 [Thermomicrobium roseum DSM 5159]
gi|221156851|gb|ACM05978.1| 30S ribosomal protein S1 [Thermomicrobium roseum DSM 5159]
Length = 443
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 93/193 (48%), Gaps = 34/193 (17%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E L G T G+V SI FG F+D G DGLVH+S +S VK ++ VG EV V +
Sbjct: 220 ETLREGETRRGRVTSIADFGVFVDIGG-ADGLVHLSEISWTRVKHPSEVLRVGDEVDVMV 278
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
+ N E +I+L++R R+ +P + ++F
Sbjct: 279 LSVNPEQRKIALSIR-------------------------RTQPEPWMQ----VASQFQV 309
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
GQ + GT+ L GAF L EG EG + SE + G+ LQ G +V VRV+RI
Sbjct: 310 GQVVRGTITQLASFGAFARLQEGVEGLIHVSELA--GWRVEHPNEVLQEGDDVIVRVIRI 367
Query: 323 --SRGQVTLTMKK 333
+R ++ L++++
Sbjct: 368 DPARRRIGLSLRR 380
Score = 43.1 bits (100), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G G + + FGAF +GL+HVS L+ V+ ++ G +V VR+I +
Sbjct: 310 GQVVRGTITQLASFGAFARLQEGVEGLIHVSELAGWRVEHPNEVLQEGDDVIVRVIRIDP 369
Query: 208 ETGRISLTMRESDDIS 223
RI L++R + +IS
Sbjct: 370 ARRRIGLSLRRALEIS 385
>gi|373852599|ref|ZP_09595399.1| Tex-like protein [Opitutaceae bacterium TAV5]
gi|372474828|gb|EHP34838.1| Tex-like protein [Opitutaceae bacterium TAV5]
Length = 826
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 53/82 (64%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K EDL PG G V ++ FGAF+D G DGLVHVS+L+D+FVKD +V GQ+V+
Sbjct: 687 KPEDLKPGMKLPGVVTNVTAFGAFVDVGVHQDGLVHVSQLADSFVKDPAEVVKPGQKVRA 746
Query: 201 RLIEANAETGRISLTMRESDDI 222
+IE + RI+L++R + I
Sbjct: 747 TVIEVDLARNRIALSLRTNPQI 768
>gi|7007440|dbj|BAA90854.1| YdcI [Bacillus halodurans]
Length = 315
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 89/178 (50%), Gaps = 17/178 (9%)
Query: 58 FSQFQSGSALQHKSALHIISATGINVAVEESDSPAADDDSAGASDIPSDVETSESSSIKS 117
F + G L +A+H S + + E + AAD G D+ ++ + S++ +
Sbjct: 138 FLRIMDGDNLLDATAIHPESYKVTDKLLSEVGATAAD---VGIEDLKKKLQALDVSAMAA 194
Query: 118 E---ASPTL-----AESRRSRTARKSEMPPV------KNEDLIPGATFTGKVRSIQPFGA 163
PTL A R +R R P+ + EDL+PG G VR++ FG
Sbjct: 195 TLDVGVPTLKDMIDALIRPTRDPRDEVAKPLLKQDVLQLEDLLPGMELQGTVRNVVDFGV 254
Query: 164 FIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDD 221
F+D G DGLVH+S+L++ ++K +V+VG+ V V + + + + GRI+LTM +D
Sbjct: 255 FVDIGVKQDGLVHISKLANRYIKHPLEVVTVGEIVTVWVEDVDIKKGRIALTMLRPED 312
Score = 46.2 bits (108), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 55/100 (55%), Gaps = 4/100 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R +KP K+D ++ + G +L+GTV+N+ G F+ + ++G + S+ ++
Sbjct: 215 RDPRDEVAKPLLKQDVLQLEDLLPGMELQGTVRNVVDFGVFVDIGVKQDGLVHISKLANR 274
Query: 299 GFANMMGGSSLQVGQEVSVRV--LRISRGQVTLTMKKEDD 336
+ + + VG+ V+V V + I +G++ LTM + +D
Sbjct: 275 YIKHPL--EVVTVGEIVTVWVEDVDIKKGRIALTMLRPED 312
>gi|302038462|ref|YP_003798784.1| putative transcriptional accessory protein [Candidatus Nitrospira
defluvii]
gi|300606526|emb|CBK42859.1| predicted Transcriptional accessory protein [Candidatus Nitrospira
defluvii]
Length = 799
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVHVS L++ FVKD +V GQ VKV+++
Sbjct: 672 DLQPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSALANKFVKDPHEVVKPGQIVKVKVL 731
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRR 243
+ RISLTMR +D + Q D A G + RR
Sbjct: 732 AVDVPRQRISLTMR-MEDAATPASQPDPRAGGPRDTRDRR 770
Score = 39.3 bits (90), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 51/114 (44%), Gaps = 21/114 (18%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT F G + LEG V N+ GAF+ + +
Sbjct: 640 VRDILTELEKPGRDPRPEFKTATFRDGVESLADLQPGMVLEGVVTNVAAFGAFVDIGVHQ 699
Query: 287 EGFLPTSEESDDGFANMMGGSSLQV---GQEVSVRVLRIS--RGQVTLTMKKED 335
+G + S AN +V GQ V V+VL + R +++LTM+ ED
Sbjct: 700 DGLVHVS-----ALANKFVKDPHEVVKPGQIVKVKVLAVDVPRQRISLTMRMED 748
>gi|221195607|ref|ZP_03568661.1| 30S ribosomal protein S1 [Atopobium rimae ATCC 49626]
gi|221184373|gb|EEE16766.1| 30S ribosomal protein S1 [Atopobium rimae ATCC 49626]
Length = 441
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 96/203 (47%), Gaps = 35/203 (17%)
Query: 132 ARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSI 191
ARK+E + + L G G V SI FGAF+D G DGLVH+S LS N V +
Sbjct: 192 ARKAERQDILGK-LKVGMKLQGTVSSIVEFGAFVDLGGI-DGLVHISELSWNHVNHPSEV 249
Query: 192 VSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQK 251
V VGQEV+V++++ + RISL ++++ T P +
Sbjct: 250 VKVGQEVEVQVLDVDLNRERISLGLKQT-------------------------TEDPWR- 283
Query: 252 RDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQV 311
+ +KF +EGTV L GAF+ L +G EG + SE + V
Sbjct: 284 ---VLVSKFPVDAIVEGTVTKLVTFGAFVDLGDGVEGLVHISEMAKQHVTA--PSQVCTV 338
Query: 312 GQEVSVRVLRI--SRGQVTLTMK 332
G +V V+V+ I R +++L+MK
Sbjct: 339 GDKVQVKVMEIDLDRRRISLSMK 361
>gi|331005891|ref|ZP_08329243.1| Transcription accessory protein (S1 RNA-binding domain) [gamma
proteobacterium IMCC1989]
gi|330420335|gb|EGG94649.1| Transcription accessory protein (S1 RNA-binding domain) [gamma
proteobacterium IMCC1989]
Length = 780
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 64/109 (58%), Gaps = 6/109 (5%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL+P G + ++ FGAF+D G DGLVH+S LS+ FVKD ++V G VKV++
Sbjct: 644 KDLVPAMILEGVITNVTNFGAFVDIGVHQDGLVHISALSNTFVKDPRTVVKAGDIVKVKV 703
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQK 251
+E + RI+L+MR D+++ D+ + K T R++ +P K
Sbjct: 704 MEVDIPRKRIALSMRLEDEVNA---HTDSASGSSK---TNRASKQPSHK 746
Score = 40.4 bits (93), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 15/107 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT F +G + LEG + N+T GAF+ + ++G + S
Sbjct: 622 KPGRDPRPEFKTASFKEGVETLKDLVPAMILEGVITNVTNFGAFVDIGVHQDGLVHISAL 681
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKEDDVGSN 340
S+ + + ++ G V V+V+ I R ++ L+M+ ED+V ++
Sbjct: 682 SNTFVKDPR--TVVKAGDIVKVKVMEVDIPRKRIALSMRLEDEVNAH 726
>gi|218768323|ref|YP_002342835.1| 30S ribosomal protein S1 [Neisseria meningitidis Z2491]
gi|433479880|ref|ZP_20437170.1| ribosomal protein S1 [Neisseria meningitidis 63041]
gi|433520080|ref|ZP_20476800.1| ribosomal protein S1 [Neisseria meningitidis 65014]
gi|433541158|ref|ZP_20497610.1| ribosomal protein S1 [Neisseria meningitidis 63006]
gi|121052331|emb|CAM08662.1| 30S ribosomal protein S1 [Neisseria meningitidis Z2491]
gi|432216219|gb|ELK72101.1| ribosomal protein S1 [Neisseria meningitidis 63041]
gi|432254802|gb|ELL10136.1| ribosomal protein S1 [Neisseria meningitidis 65014]
gi|432277171|gb|ELL32220.1| ribosomal protein S1 [Neisseria meningitidis 63006]
Length = 561
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 96/193 (49%), Gaps = 33/193 (17%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E+L G+ G V++I +GAF+D G DGL+H++ L+ VK ++ VGQEV+ ++
Sbjct: 188 ENLQEGSVIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKV 246
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
++ + E R+SL M+ Q + SG TRR P R
Sbjct: 247 LKFDQEKQRVSLGMK---------QLGEDPWSG----LTRRY---PQDTR---------- 280
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
L G V NLT GAF+ + +G EG + S E D N+ +Q+G EV V +L I
Sbjct: 281 ---LFGKVSNLTDYGAFVEIEQGIEGLVHVS-EMDWTNKNVHPSKVVQLGDEVEVMILEI 336
Query: 323 SRG--QVTLTMKK 333
G +++L MK+
Sbjct: 337 DEGRRRISLGMKQ 349
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 46/197 (23%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS-----DNFVKDVGSIVSVGQEVKVRL 202
G +G V+SI FG F+ DGLVH+S LS + V+ G+EV+ +
Sbjct: 365 GDKISGAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKK----GEEVEAVV 420
Query: 203 IEANAETGRISLTMR--ESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKF 260
+ + E RISL ++ E D D
Sbjct: 421 LAIDVEKERISLGIKQLEGDPFGNFISVND------------------------------ 450
Query: 261 VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVL 320
KG ++G+VK++ GA I+L + EG+LP SE + D ++ + L+ G EV ++
Sbjct: 451 -KGSLVKGSVKSVDAKGAVIALSDEVEGYLPASEFAADRVEDLT--TKLKEGDEVEAVIV 507
Query: 321 RISRGQ--VTLTMKKED 335
+ R + L++K +D
Sbjct: 508 TVDRKNRSIKLSVKAKD 524
>gi|423142019|ref|ZP_17129657.1| S1 RNA binding domain protein [Salmonella enterica subsp. houtenae
str. ATCC BAA-1581]
gi|379049948|gb|EHY67841.1| S1 RNA binding domain protein [Salmonella enterica subsp. houtenae
str. ATCC BAA-1581]
Length = 776
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 50/74 (67%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|359436483|ref|ZP_09226585.1| protein yhgF [Pseudoalteromonas sp. BSi20311]
gi|358028853|dbj|GAA62834.1| protein yhgF [Pseudoalteromonas sp. BSi20311]
Length = 774
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAF+D G DGLVH+S +++ F+ D +V G VKV
Sbjct: 642 KISDLKPGMILEGVVSNVANFGAFVDVGVHQDGLVHISAITNKFISDPREVVKAGDIVKV 701
Query: 201 RLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSK-PGQKRD 253
+++E +A RIS TMR D+I K A A+ K R + S+ P KRD
Sbjct: 702 KVVEVDAARKRISFTMRLDDEID--TSNKAAPAAPQKPRGNNANQSRAPKPKRD 753
>gi|144897525|emb|CAM74389.1| Transcriptional accessory protein [Magnetospirillum gryphiswaldense
MSR-1]
Length = 779
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 58/92 (63%), Gaps = 3/92 (3%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVHVS L+D FVKD +V G V V++
Sbjct: 652 QDLQPGMILEGVVTNVTNFGAFVDIGVHQDGLVHVSALADRFVKDPHEVVKPGDVVSVKV 711
Query: 203 IEANAETGRISLTMRESDDISKL---QQQKDA 231
+E + + RI+LTMR++D + +QQ+DA
Sbjct: 712 LEVDLKRKRIALTMRKNDAPAPARPQEQQRDA 743
Score = 42.7 bits (99), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 20/133 (15%)
Query: 221 DISKLQQQKDATASGDK-----VRTTRRSTSKPGQK-RDEMKTTKFVKG----QDL---- 266
D++ L+ K A + D+ ++ + KPG+ R E KT F G QDL
Sbjct: 599 DVTFLRGLKAAQFTDDRFGEPTIKDILKELEKPGRDPRPEFKTASFKDGVETMQDLQPGM 658
Query: 267 --EGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI-- 322
EG V N+T GAF+ + ++G + S +D + ++ G VSV+VL +
Sbjct: 659 ILEGVVTNVTNFGAFVDIGVHQDGLVHVSALADRFVKD--PHEVVKPGDVVSVKVLEVDL 716
Query: 323 SRGQVTLTMKKED 335
R ++ LTM+K D
Sbjct: 717 KRKRIALTMRKND 729
>gi|391229617|ref|ZP_10265823.1| transcriptional accessory protein [Opitutaceae bacterium TAV1]
gi|391219278|gb|EIP97698.1| transcriptional accessory protein [Opitutaceae bacterium TAV1]
Length = 826
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 53/82 (64%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K EDL PG G V ++ FGAF+D G DGLVHVS+L+D+FVKD +V GQ+V+
Sbjct: 687 KPEDLKPGMKLPGVVTNVTAFGAFVDVGVHQDGLVHVSQLADSFVKDPAEVVKPGQKVRA 746
Query: 201 RLIEANAETGRISLTMRESDDI 222
+IE + RI+L++R + I
Sbjct: 747 TVIEVDLARNRIALSLRTNPQI 768
>gi|350563999|ref|ZP_08932818.1| Tex-like protein-like protein [Thioalkalimicrobium aerophilum AL3]
gi|349777999|gb|EGZ32358.1| Tex-like protein-like protein [Thioalkalimicrobium aerophilum AL3]
Length = 770
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 60/106 (56%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S L+D FV D ++ GQ VKV +
Sbjct: 646 KDLAPGLVLEGVVTNVTHFGAFVDVGVHQDGLVHISHLADQFVSDPHQVIKAGQVVKVTV 705
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKP 248
++ RISL+M+ + +S AT + + +T + T+KP
Sbjct: 706 LDVEVARKRISLSMKSNPTLSSAGLAASATQNKVERKTADQKTAKP 751
>gi|392557048|ref|ZP_10304185.1| hypothetical protein PundN2_16558 [Pseudoalteromonas undina NCIMB
2128]
Length = 774
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAF+D G DGLVH+S +++ F+ D +V G VKV
Sbjct: 642 KISDLKPGMILEGVVSNVANFGAFVDVGVHQDGLVHISAITNKFISDPREVVKAGDIVKV 701
Query: 201 RLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSK-PGQKRD 253
+++E +A RIS TMR D+I K A A+ K R + S+ P KRD
Sbjct: 702 KVVEVDAARKRISFTMRLDDEID--TSNKAAPAAPQKPRGNNANQSRAPKPKRD 753
>gi|293398896|ref|ZP_06643061.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae F62]
gi|291610310|gb|EFF39420.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae F62]
Length = 570
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 96/193 (49%), Gaps = 33/193 (17%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E+L G+ G V++I +GAF+D G DGL+H++ L+ VK ++ VGQEV+ ++
Sbjct: 197 ENLQEGSVIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKV 255
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
++ + E R+SL M+ Q + SG TRR P R
Sbjct: 256 LKFDQEKQRVSLGMK---------QLGEDPWSG----LTRRY---PQATR---------- 289
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
L G V NLT GAF+ + +G EG + S E D N+ +Q+G EV V +L I
Sbjct: 290 ---LFGKVSNLTDYGAFVEIEQGIEGLVHVS-EMDWTNKNVHPSKVVQLGDEVEVMILEI 345
Query: 323 SRG--QVTLTMKK 333
G +++L MK+
Sbjct: 346 DEGRRRISLGMKQ 358
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 85/197 (43%), Gaps = 46/197 (23%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS-----DNFVKDVGSIVSVGQEVKVRL 202
G +G V+SI FG F+ DGLVH+S LS + V+ G+EV+ +
Sbjct: 374 GDKISGAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKK----GEEVEAVV 429
Query: 203 IEANAETGRISLTMR--ESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKF 260
+ + E RISL ++ E D D
Sbjct: 430 LAIDVEKERISLGIKQLEGDPFGNFISVND------------------------------ 459
Query: 261 VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVL 320
KG ++G+VK++ GA ++L + EG+LP SE + D ++ + L+ G EV ++
Sbjct: 460 -KGSLVKGSVKSVDAKGAVVALSDEVEGYLPASEFAADRVEDLT--TKLKEGDEVEAVIV 516
Query: 321 RISRGQ--VTLTMKKED 335
+ R + L++K +D
Sbjct: 517 TVDRKNRSIKLSVKAKD 533
>gi|291043584|ref|ZP_06569300.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae DGI2]
gi|291012047|gb|EFE04036.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae DGI2]
Length = 570
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 96/193 (49%), Gaps = 33/193 (17%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E+L G+ G V++I +GAF+D G DGL+H++ L+ VK ++ VGQEV+ ++
Sbjct: 197 ENLQEGSVIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKV 255
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
++ + E R+SL M+ Q + SG TRR P R
Sbjct: 256 LKFDQEKQRVSLGMK---------QLGEDPWSG----LTRRY---PQATR---------- 289
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
L G V NLT GAF+ + +G EG + S E D N+ +Q+G EV V +L I
Sbjct: 290 ---LFGKVSNLTDYGAFVEIEQGIEGLVHVS-EMDWTNKNVHPSKVVQLGDEVEVMILEI 345
Query: 323 SRG--QVTLTMKK 333
G +++L MK+
Sbjct: 346 DEGRRRISLGMKQ 358
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 46/197 (23%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS-----DNFVKDVGSIVSVGQEVKVRL 202
G +G V+SI FG F+ DGLVH+S LS + V+ G+EV+ +
Sbjct: 374 GDKISGAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKK----GEEVEAVV 429
Query: 203 IEANAETGRISLTMR--ESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKF 260
+ + E RISL ++ E D D
Sbjct: 430 LAIDVEKERISLGIKQLEGDPFGNFISVND------------------------------ 459
Query: 261 VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVL 320
KG ++G+VK++ GA I+L + EG+LP SE + D ++ + L+ G EV ++
Sbjct: 460 -KGSLVKGSVKSVDAKGAVIALSDEVEGYLPASEFAADRVEDLT--TKLKEGDEVEAVIV 516
Query: 321 RISRGQ--VTLTMKKED 335
+ R + L++K +D
Sbjct: 517 TVDRKNRSIKLSVKAKD 533
>gi|241758882|ref|ZP_04756995.1| ribosomal protein S1 [Neisseria flavescens SK114]
gi|241321090|gb|EER57303.1| ribosomal protein S1 [Neisseria flavescens SK114]
Length = 559
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 97/193 (50%), Gaps = 33/193 (17%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E+L G+ G V++I +GAF+D G DGL+H++ L+ VK ++ VGQEV+ ++
Sbjct: 186 ENLQEGSVIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKV 244
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
++ + + R+SL M+ Q + SG TRR + +
Sbjct: 245 LKFDQDKQRVSLGMK---------QLGEDPWSG----LTRR----------------YPQ 275
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G L G V NLT GAF+ + +G EG + S E D N+ +Q+G EV V +L I
Sbjct: 276 GTRLFGKVSNLTDYGAFVEIEQGIEGLVHVS-EMDWTNKNVHPSKVVQLGDEVEVMILEI 334
Query: 323 --SRGQVTLTMKK 333
R +++L MK+
Sbjct: 335 DEDRRRISLGMKQ 347
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 46/197 (23%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS-----DNFVKDVGSIVSVGQEVKVRL 202
G +G V+SI FG F+ DGLVH+S LS + V+ G+EV+ +
Sbjct: 363 GDKISGAVKSITDFGVFVGLPGGIDGLVHLSDLSWTEAGEEAVRKYKK----GEEVEAVV 418
Query: 203 IEANAETGRISLTMR--ESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKF 260
+ + E RISL ++ E D D
Sbjct: 419 LAIDVEKERISLGIKQLEGDPFGNFISVND------------------------------ 448
Query: 261 VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVL 320
KG ++G+VK++ GA ++L E EG+LP SE + D ++ + L+ G EV ++
Sbjct: 449 -KGSLVKGSVKSVDAKGAVVALSEEVEGYLPASEFAADRVEDLT--TKLKEGDEVEAVIV 505
Query: 321 RISRGQ--VTLTMKKED 335
+ R + L++K +D
Sbjct: 506 TVDRKNRSIRLSVKAKD 522
>gi|429092607|ref|ZP_19155234.1| Transcription accessory protein (S1 RNA-binding domain)
[Cronobacter dublinensis 1210]
gi|426742570|emb|CCJ81347.1| Transcription accessory protein (S1 RNA-binding domain)
[Cronobacter dublinensis 1210]
Length = 774
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LSD FV+D ++V G VKV+++
Sbjct: 647 DLQPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 15/105 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT +F +G + LEG V N+T GAF+ + ++G + S
Sbjct: 624 KPGRDPRPEFKTAQFAEGVETMNDLQPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSL 683
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDDVG 338
SD + + ++ G V V+VL + R ++ LTM+ ++ G
Sbjct: 684 SDKFVED--PHTVVKAGDIVKVKVLEVDLQRKRIALTMRLDEQPG 726
>gi|421079908|ref|ZP_15540844.1| YhgF like protein [Pectobacterium wasabiae CFBP 3304]
gi|401705395|gb|EJS95582.1| YhgF like protein [Pectobacterium wasabiae CFBP 3304]
Length = 784
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S L+D FV D +V G VKV+++
Sbjct: 653 DLLPGMILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADRFVDDPHKVVKAGDIVKVKVM 712
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 713 EVDMQRKRIALTMR 726
>gi|365102680|ref|ZP_09332981.1| protein yhgF [Citrobacter freundii 4_7_47CFAA]
gi|363646408|gb|EHL85656.1| protein yhgF [Citrobacter freundii 4_7_47CFAA]
Length = 777
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 50/74 (67%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|261216346|ref|ZP_05930627.1| RNA binding protein [Brucella abortus bv. 3 str. Tulya]
gi|260917953|gb|EEX84814.1| RNA binding protein [Brucella abortus bv. 3 str. Tulya]
Length = 713
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVHVS+L+D FV+D +V G VKVR+
Sbjct: 591 KDLKPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRV 650
Query: 203 IEANAETGRISLTMRE 218
E + RI LTMR+
Sbjct: 651 TEVDVPRKRIGLTMRK 666
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT F G D LEGTV N+ GAF+ + +
Sbjct: 560 VRDIIAELDKPGRDPRPEFKTATFADGIDDIKDLKPGMMLEGTVTNVAAFGAFVDIGVHQ 619
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRV--LRISRGQVTLTMKKE 334
+G + S+ +D + ++ G V VRV + + R ++ LTM+K+
Sbjct: 620 DGLVHVSQLADRFVRDPH--EVVKAGDVVKVRVTEVDVPRKRIGLTMRKD 667
>gi|237728726|ref|ZP_04559207.1| conserved hypothetical protein [Citrobacter sp. 30_2]
gi|226909348|gb|EEH95266.1| conserved hypothetical protein [Citrobacter sp. 30_2]
Length = 777
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 50/74 (67%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|148976495|ref|ZP_01813191.1| hypothetical protein VSWAT3_11036 [Vibrionales bacterium SWAT-3]
gi|145964071|gb|EDK29328.1| hypothetical protein VSWAT3_11036 [Vibrionales bacterium SWAT-3]
Length = 776
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 63/111 (56%), Gaps = 2/111 (1%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L+D FV D +V G VKV+++
Sbjct: 647 DLEPGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAGDIVKVKVM 706
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDE 254
E + + RI+L+MR D+ Q + +S + ++ S+ GQ+R E
Sbjct: 707 EVDVQRKRIALSMRMKDEPG--QDNRAQRSSAPRTQSRPNQHSQGGQRRRE 755
>gi|429083449|ref|ZP_19146490.1| Transcription accessory protein (S1 RNA-binding domain)
[Cronobacter condimenti 1330]
gi|426547696|emb|CCJ72531.1| Transcription accessory protein (S1 RNA-binding domain)
[Cronobacter condimenti 1330]
Length = 774
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LSD FV+D ++V G VKV+++
Sbjct: 647 DLQPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 15/105 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT +F G + LEG V N+T GAF+ + ++G + S
Sbjct: 624 KPGRDPRPEFKTAQFADGVETMNDLQPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSL 683
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDDVG 338
SD + + ++ G V V+VL + R ++ LTM+ ++ G
Sbjct: 684 SDKFVED--PHTVVKAGDIVKVKVLEVDLQRKRIALTMRLDEQPG 726
>gi|59801032|ref|YP_207744.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae FA 1090]
gi|240013932|ref|ZP_04720845.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae DGI18]
gi|240016374|ref|ZP_04722914.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae FA6140]
gi|268594992|ref|ZP_06129159.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae 35/02]
gi|268601567|ref|ZP_06135734.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae PID18]
gi|268684527|ref|ZP_06151389.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae SK-92-679]
gi|268686837|ref|ZP_06153699.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae SK-93-1035]
gi|59717927|gb|AAW89332.1| putative 30S ribosomal protein S1 [Neisseria gonorrhoeae FA 1090]
gi|268548381|gb|EEZ43799.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae 35/02]
gi|268585698|gb|EEZ50374.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae PID18]
gi|268624811|gb|EEZ57211.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae SK-92-679]
gi|268627121|gb|EEZ59521.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae SK-93-1035]
Length = 561
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 96/193 (49%), Gaps = 33/193 (17%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E+L G+ G V++I +GAF+D G DGL+H++ L+ VK ++ VGQEV+ ++
Sbjct: 188 ENLQEGSVIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKV 246
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
++ + E R+SL M+ Q + SG TRR P R
Sbjct: 247 LKFDQEKQRVSLGMK---------QLGEDPWSG----LTRRY---PQATR---------- 280
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
L G V NLT GAF+ + +G EG + S E D N+ +Q+G EV V +L I
Sbjct: 281 ---LFGKVSNLTDYGAFVEIEQGIEGLVHVS-EMDWTNKNVHPSKVVQLGDEVEVMILEI 336
Query: 323 SRG--QVTLTMKK 333
G +++L MK+
Sbjct: 337 DEGRRRISLGMKQ 349
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 46/197 (23%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS-----DNFVKDVGSIVSVGQEVKVRL 202
G +G V+SI FG F+ DGLVH+S LS + V+ G+EV+ +
Sbjct: 365 GDKISGAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKK----GEEVEAVV 420
Query: 203 IEANAETGRISLTMR--ESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKF 260
+ + E RISL ++ E D D
Sbjct: 421 LAIDVEKERISLGIKQLEGDPFGNFISVND------------------------------ 450
Query: 261 VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVL 320
KG ++G+VK++ GA I+L + EG+LP SE + D ++ + L+ G EV ++
Sbjct: 451 -KGSLVKGSVKSVDAKGAVIALSDEVEGYLPASEFAADRVEDLT--TKLKEGDEVEAVIV 507
Query: 321 RISRGQ--VTLTMKKED 335
+ R + L++K +D
Sbjct: 508 TVDRKNRSIKLSVKAKD 524
>gi|421766691|ref|ZP_16203460.1| SSU ribosomal protein S1p [Lactococcus garvieae DCC43]
gi|407624717|gb|EKF51450.1| SSU ribosomal protein S1p [Lactococcus garvieae DCC43]
Length = 407
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 88/175 (50%), Gaps = 32/175 (18%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G G V + FGAF+D G DGLVHVS LS N VK +V G +V+V++++ +
Sbjct: 195 GDIVEGTVSRVTNFGAFVDLGGI-DGLVHVSELSHNRVKRPSDVVKPGDKVEVKILKLDE 253
Query: 208 ETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLE 267
E GR+SL+++ AT +G P ++ +E G +E
Sbjct: 254 EAGRLSLSLK-------------ATQAG------------PWEQVEEKAPV----GSTVE 284
Query: 268 GTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
GTVK LT GAF+ L G EG + S+ S + N L+VGQ V+V+VL +
Sbjct: 285 GTVKRLTDFGAFVELFPGVEGLVHVSQISWERVENPK--DVLKVGQVVNVKVLDV 337
Score = 52.8 bits (125), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 45/70 (64%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G+T G V+ + FGAF++ +GLVHVS++S V++ ++ VGQ V V++++
Sbjct: 280 GSTVEGTVKRLTDFGAFVELFPGVEGLVHVSQISWERVENPKDVLKVGQVVNVKVLDVKP 339
Query: 208 ETGRISLTMR 217
E RISL+++
Sbjct: 340 EEERISLSIK 349
>gi|417534470|ref|ZP_12188231.1| Transcription accessory protein, partial [Salmonella enterica
subsp. enterica serovar Urbana str. R8-2977]
gi|353658692|gb|EHC98801.1| Transcription accessory protein, partial [Salmonella enterica
subsp. enterica serovar Urbana str. R8-2977]
Length = 731
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 50/74 (67%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|300313473|ref|YP_003777565.1| transcription accessory protein [Herbaspirillum seropedicae SmR1]
gi|300076258|gb|ADJ65657.1| transcription accessory protein [Herbaspirillum seropedicae SmR1]
Length = 783
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 52/78 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL P G V ++ FGAF+D G DGLVH+S LS+ +VKD ++V GQ VKV++
Sbjct: 658 KDLRPDMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNTYVKDPHTVVKAGQVVKVKV 717
Query: 203 IEANAETGRISLTMRESD 220
+E + + RI+LTMR +D
Sbjct: 718 LEVDEKRKRIALTMRLND 735
>gi|225075203|ref|ZP_03718402.1| hypothetical protein NEIFLAOT_00203 [Neisseria flavescens
NRL30031/H210]
gi|261380192|ref|ZP_05984765.1| ribosomal protein S1 [Neisseria subflava NJ9703]
gi|319638403|ref|ZP_07993165.1| 30S ribosomal protein S1 [Neisseria mucosa C102]
gi|224953378|gb|EEG34587.1| hypothetical protein NEIFLAOT_00203 [Neisseria flavescens
NRL30031/H210]
gi|284797039|gb|EFC52386.1| ribosomal protein S1 [Neisseria subflava NJ9703]
gi|317400152|gb|EFV80811.1| 30S ribosomal protein S1 [Neisseria mucosa C102]
Length = 561
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 97/193 (50%), Gaps = 33/193 (17%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E+L G+ G V++I +GAF+D G DGL+H++ L+ VK ++ VGQEV+ ++
Sbjct: 188 ENLQEGSVIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKV 246
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
++ + + R+SL M+ Q + SG TRR + +
Sbjct: 247 LKFDQDKQRVSLGMK---------QLGEDPWSG----LTRR----------------YPQ 277
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G L G V NLT GAF+ + +G EG + S E D N+ +Q+G EV V +L I
Sbjct: 278 GTRLFGKVSNLTDYGAFVEIEQGIEGLVHVS-EMDWTNKNVHPSKVVQLGDEVEVMILEI 336
Query: 323 --SRGQVTLTMKK 333
R +++L MK+
Sbjct: 337 DEDRRRISLGMKQ 349
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 46/197 (23%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS-----DNFVKDVGSIVSVGQEVKVRL 202
G +G V+SI FG F+ DGLVH+S LS + V+ G+EV+ +
Sbjct: 365 GDKISGAVKSITDFGVFVGLPGGIDGLVHLSDLSWTEAGEEAVRKYKK----GEEVEAVV 420
Query: 203 IEANAETGRISLTMR--ESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKF 260
+ + E RISL ++ E D D
Sbjct: 421 LAIDVEKERISLGIKQLEGDPFGNFISVND------------------------------ 450
Query: 261 VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVL 320
KG ++G+VK++ GA ++L E EG+LP SE + D ++ + L+ G EV ++
Sbjct: 451 -KGSLVKGSVKSVDAKGAVVALSEEVEGYLPASEFAADRVEDLT--TKLKEGDEVEAVIV 507
Query: 321 RISRGQ--VTLTMKKED 335
+ R + L++K +D
Sbjct: 508 TVDRKNRSIRLSVKAKD 524
>gi|126666627|ref|ZP_01737605.1| General secretion pathway protein J [Marinobacter sp. ELB17]
gi|126629015|gb|EAZ99634.1| General secretion pathway protein J [Marinobacter sp. ELB17]
Length = 304
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 60/109 (55%), Gaps = 3/109 (2%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S L+D F+KD +V G VKV++
Sbjct: 161 KDLEPGMVLEGSVTNVTNFGAFVDIGVHQDGLVHISALADRFIKDPREVVKAGDIVKVKV 220
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQK 251
+E + RI+LTMR D QQ GDK + R+ + +K
Sbjct: 221 MEVDIPRKRIALTMRMGDQPG---QQPAERPRGDKTPSPNRNNAAGARK 266
>gi|417470261|ref|ZP_12166466.1| Transcription accessory protein, partial [Salmonella enterica
subsp. enterica serovar Montevideo str. S5-403]
gi|353625613|gb|EHC74363.1| Transcription accessory protein, partial [Salmonella enterica
subsp. enterica serovar Montevideo str. S5-403]
Length = 742
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 50/74 (67%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 657 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 716
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 717 EVDLQRKRIALTMR 730
>gi|299536388|ref|ZP_07049701.1| general stress protein 13 [Lysinibacillus fusiformis ZC1]
gi|298728374|gb|EFI68936.1| general stress protein 13 [Lysinibacillus fusiformis ZC1]
Length = 125
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 55/84 (65%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G TGKV IQP+GAF+ T GLVH+S ++ FVKDV ++VGQEV+V+++E +
Sbjct: 8 GDVLTGKVTGIQPYGAFVALDDNTQGLVHISEITYGFVKDVSEFLAVGQEVEVKILEIDE 67
Query: 208 ETGRISLTMRESDDISKLQQQKDA 231
E +ISL+MR D ++KDA
Sbjct: 68 EAEKISLSMRALQDRPATVRKKDA 91
>gi|296117628|ref|ZP_06836212.1| protein YhgF [Corynebacterium ammoniagenes DSM 20306]
gi|295969359|gb|EFG82600.1| protein YhgF [Corynebacterium ammoniagenes DSM 20306]
Length = 749
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 66/123 (53%), Gaps = 8/123 (6%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL+PG G V ++ FGAF+D G DGLVH+S +S+ FV D +V G+ V+V
Sbjct: 632 KISDLVPGMVLEGTVTNVAAFGAFVDVGVHQDGLVHISAMSNKFVSDPHEVVRSGEVVRV 691
Query: 201 RLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKP---GQKRDEMKT 257
+++E + RISLT+R D+ Q +K S K R R+ KP G D +K
Sbjct: 692 KVLEVDVPRKRISLTLRLEDEA---QAKKPEKVS--KPRKQPRTRQKPAPRGSMADALKN 746
Query: 258 TKF 260
F
Sbjct: 747 AGF 749
Score = 39.7 bits (91), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 15/103 (14%)
Query: 247 KPGQK-RDEMKTTKF----------VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT F V G LEGTV N+ GAF+ + ++G + S
Sbjct: 612 KPGRDPRPEFKTATFKEGVEKISDLVPGMVLEGTVTNVAAFGAFVDVGVHQDGLVHISAM 671
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKKEDD 336
S+ ++ ++ G+ V V+VL + R +++LT++ ED+
Sbjct: 672 SNKFVSDPH--EVVRSGEVVRVKVLEVDVPRKRISLTLRLEDE 712
>gi|168235097|ref|ZP_02660155.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
gi|168818684|ref|ZP_02830684.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|194735081|ref|YP_002116446.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197249394|ref|YP_002148427.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|204928818|ref|ZP_03220017.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|409247185|ref|YP_006887884.1| Polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase; PNPase [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|416425772|ref|ZP_11692555.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 315996572]
gi|416434016|ref|ZP_11697415.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-1]
gi|416437229|ref|ZP_11698635.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-3]
gi|416443197|ref|ZP_11702810.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-4]
gi|416453265|ref|ZP_11709518.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-1]
gi|416459532|ref|ZP_11713986.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-2]
gi|416463117|ref|ZP_11715839.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 531954]
gi|416480563|ref|ZP_11722963.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|416486786|ref|ZP_11725179.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. OH_2009072675]
gi|416498980|ref|ZP_11730549.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|416506024|ref|ZP_11734270.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. SARB31]
gi|416516634|ref|ZP_11739183.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. ATCC BAA710]
gi|416531777|ref|ZP_11745724.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. LQC 10]
gi|416533482|ref|ZP_11746439.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. SARB30]
gi|416544592|ref|ZP_11752921.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 19N]
gi|416553130|ref|ZP_11757541.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 29N]
gi|416564360|ref|ZP_11763253.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 42N]
gi|416568841|ref|ZP_11765092.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 4441 H]
gi|416578661|ref|ZP_11770697.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 81038-01]
gi|416584355|ref|ZP_11774056.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. MD_MDA09249507]
gi|416589740|ref|ZP_11777325.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 414877]
gi|416597377|ref|ZP_11781958.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 366867]
gi|416605261|ref|ZP_11786806.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 413180]
gi|416616055|ref|ZP_11793858.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 446600]
gi|416624517|ref|ZP_11798088.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 609458-1]
gi|416635239|ref|ZP_11803032.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 556150-1]
gi|416643875|ref|ZP_11806294.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 609460]
gi|416647870|ref|ZP_11808634.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 507440-20]
gi|416657840|ref|ZP_11813936.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 556152]
gi|416667071|ref|ZP_11817955.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. MB101509-0077]
gi|416676435|ref|ZP_11821776.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. MB102109-0047]
gi|416708808|ref|ZP_11833612.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. MB111609-0052]
gi|416713914|ref|ZP_11837407.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009083312]
gi|416720877|ref|ZP_11842408.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009085258]
gi|416724201|ref|ZP_11844725.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 315731156]
gi|416734651|ref|ZP_11851123.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2009159199]
gi|416741613|ref|ZP_11855246.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008282]
gi|416749552|ref|ZP_11859300.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008283]
gi|416756871|ref|ZP_11862778.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008284]
gi|416761204|ref|ZP_11865338.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008285]
gi|416772294|ref|ZP_11873224.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008287]
gi|418483009|ref|ZP_13052021.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 80959-06]
gi|418492283|ref|ZP_13058782.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035278]
gi|418494473|ref|ZP_13060924.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035318]
gi|418497880|ref|ZP_13064296.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035320]
gi|418504843|ref|ZP_13071197.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035321]
gi|418509184|ref|ZP_13075481.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035327]
gi|418525315|ref|ZP_13091297.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008286]
gi|440765078|ref|ZP_20944100.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Agona str. SH11G1113]
gi|440769523|ref|ZP_20948480.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Agona str. SH08SF124]
gi|440774988|ref|ZP_20953874.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Agona str. SH10GFN094]
gi|452122684|ref|YP_007472932.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
gi|194710583|gb|ACF89804.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|197213097|gb|ACH50494.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|197291463|gb|EDY30815.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
gi|204322251|gb|EDZ07449.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|205344464|gb|EDZ31228.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|320087919|emb|CBY97681.1| Polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase; PNPase [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|322614122|gb|EFY11058.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 315996572]
gi|322618014|gb|EFY14907.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-1]
gi|322625372|gb|EFY22198.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-3]
gi|322629837|gb|EFY26610.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-4]
gi|322632274|gb|EFY29025.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-1]
gi|322636375|gb|EFY33082.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-2]
gi|322643231|gb|EFY39800.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 531954]
gi|322644767|gb|EFY41303.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322651208|gb|EFY47592.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. OH_2009072675]
gi|322654924|gb|EFY51239.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322659181|gb|EFY55433.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 19N]
gi|322663118|gb|EFY59322.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 81038-01]
gi|322668604|gb|EFY64757.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. MD_MDA09249507]
gi|322674592|gb|EFY70685.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 414877]
gi|322678202|gb|EFY74263.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 366867]
gi|322682541|gb|EFY78562.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 413180]
gi|322684254|gb|EFY80260.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 446600]
gi|323192191|gb|EFZ77423.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 609458-1]
gi|323196383|gb|EFZ81535.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 556150-1]
gi|323201816|gb|EFZ86879.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 609460]
gi|323211951|gb|EFZ96778.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 556152]
gi|323216857|gb|EGA01580.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. MB101509-0077]
gi|323222256|gb|EGA06639.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. MB102109-0047]
gi|323228199|gb|EGA12330.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. MB111609-0052]
gi|323233534|gb|EGA17627.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009083312]
gi|323237004|gb|EGA21071.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009085258]
gi|323243781|gb|EGA27797.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 315731156]
gi|323245977|gb|EGA29964.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2009159199]
gi|323250753|gb|EGA34631.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008282]
gi|323255764|gb|EGA39514.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008283]
gi|323261378|gb|EGA44964.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008284]
gi|323267649|gb|EGA51131.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008285]
gi|323268530|gb|EGA51997.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008287]
gi|363548627|gb|EHL32995.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. LQC 10]
gi|363555301|gb|EHL39529.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. SARB31]
gi|363562267|gb|EHL46372.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. ATCC BAA710]
gi|363563395|gb|EHL47472.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 29N]
gi|363568144|gb|EHL52133.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. SARB30]
gi|363571232|gb|EHL55149.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 42N]
gi|363577388|gb|EHL61212.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 4441 H]
gi|366058201|gb|EHN22492.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035278]
gi|366061234|gb|EHN25480.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035318]
gi|366062411|gb|EHN26644.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 80959-06]
gi|366070295|gb|EHN34410.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035321]
gi|366075045|gb|EHN39105.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035320]
gi|366078684|gb|EHN42683.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035327]
gi|366829930|gb|EHN56804.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 507440-20]
gi|372206886|gb|EHP20388.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008286]
gi|436412352|gb|ELP10295.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Agona str. SH10GFN094]
gi|436414029|gb|ELP11961.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Agona str. SH08SF124]
gi|436414974|gb|ELP12898.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Agona str. SH11G1113]
gi|451911688|gb|AGF83494.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
Length = 776
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 50/74 (67%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|347521866|ref|YP_004779437.1| 30S ribosomal protein S1 [Lactococcus garvieae ATCC 49156]
gi|385833250|ref|YP_005871025.1| 30S ribosomal protein S1 [Lactococcus garvieae Lg2]
gi|420143919|ref|ZP_14651407.1| 30S ribosomal protein S1 [Lactococcus garvieae IPLA 31405]
gi|343180434|dbj|BAK58773.1| 30S ribosomal protein S1 [Lactococcus garvieae ATCC 49156]
gi|343182403|dbj|BAK60741.1| 30S ribosomal protein S1 [Lactococcus garvieae Lg2]
gi|391855371|gb|EIT65920.1| 30S ribosomal protein S1 [Lactococcus garvieae IPLA 31405]
Length = 407
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 88/175 (50%), Gaps = 32/175 (18%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G G V + FGAF+D G DGLVHVS LS N VK +V G +V+V++++ +
Sbjct: 195 GDIVEGTVSRVTNFGAFVDLGGI-DGLVHVSELSHNRVKRPSDVVKPGDKVEVKILKLDE 253
Query: 208 ETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLE 267
E GR+SL+++ AT +G P ++ +E G +E
Sbjct: 254 EAGRLSLSLK-------------ATQAG------------PWEQVEEKAPV----GSTVE 284
Query: 268 GTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
GTVK LT GAF+ L G EG + S+ S + N L+VGQ V+V+VL +
Sbjct: 285 GTVKRLTDFGAFVELFPGVEGLVHVSQISWERVENPK--DVLKVGQVVNVKVLDV 337
Score = 52.8 bits (125), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 45/70 (64%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G+T G V+ + FGAF++ +GLVHVS++S V++ ++ VGQ V V++++
Sbjct: 280 GSTVEGTVKRLTDFGAFVELFPGVEGLVHVSQISWERVENPKDVLKVGQVVNVKVLDVKP 339
Query: 208 ETGRISLTMR 217
E RISL+++
Sbjct: 340 EEERISLSIK 349
>gi|229829540|ref|ZP_04455609.1| hypothetical protein GCWU000342_01636 [Shuttleworthia satelles DSM
14600]
gi|229791529|gb|EEP27643.1| hypothetical protein GCWU000342_01636 [Shuttleworthia satelles DSM
14600]
Length = 818
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 51/80 (63%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG G VR++ FGAF+D G DGLVH+SR+SD F+K VSVG V V++
Sbjct: 638 EDLKPGMVLKGTVRNVVDFGAFVDIGVHQDGLVHISRISDRFIKHPLEAVSVGDIVDVQV 697
Query: 203 IEANAETGRISLTMRESDDI 222
+ + + R++L+MR D+
Sbjct: 698 VAVDLDKQRVALSMRIGRDV 717
>gi|418512494|ref|ZP_13078736.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Pomona str. ATCC 10729]
gi|366083661|gb|EHN47578.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Pomona str. ATCC 10729]
Length = 776
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 50/74 (67%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|359423491|ref|ZP_09214626.1| putative transcriptional accessory protein [Gordonia amarae NBRC
15530]
gi|358241254|dbj|GAB04208.1| putative transcriptional accessory protein [Gordonia amarae NBRC
15530]
Length = 836
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 52/82 (63%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAF+D G DGLVHVS +SD FV D +V G+ V+V
Sbjct: 677 KVADLKPGMILEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSDRFVSDPHEVVRSGEVVRV 736
Query: 201 RLIEANAETGRISLTMRESDDI 222
++I+ + E RI L++R +DD+
Sbjct: 737 KVIDVDVERQRIGLSLRLNDDV 758
>gi|357588951|ref|ZP_09127617.1| hypothetical protein CnurS_02060 [Corynebacterium nuruki S6-4]
Length = 799
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 52/81 (64%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAF+D G DGLVHVS +SD FV+D +V GQ V+V
Sbjct: 651 KVSDLTPGMVLEGTVTNVAAFGAFVDVGVHQDGLVHVSAMSDKFVEDPHDVVRSGQVVRV 710
Query: 201 RLIEANAETGRISLTMRESDD 221
+++E + E RI L++R +D+
Sbjct: 711 KVMEVDVERQRIGLSLRLTDE 731
>gi|254493933|ref|ZP_05107104.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae 1291]
gi|268599220|ref|ZP_06133387.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae MS11]
gi|268603906|ref|ZP_06138073.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae PID1]
gi|226512973|gb|EEH62318.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae 1291]
gi|268583351|gb|EEZ48027.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae MS11]
gi|268588037|gb|EEZ52713.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae PID1]
Length = 561
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 96/193 (49%), Gaps = 33/193 (17%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E+L G+ G V++I +GAF+D G DGL+H++ L+ VK ++ VGQEV+ ++
Sbjct: 188 ENLQEGSVIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKV 246
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
++ + E R+SL M+ Q + SG TRR P R
Sbjct: 247 LKFDQEKQRVSLGMK---------QLGEDPWSG----LTRRY---PQATR---------- 280
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
L G V NLT GAF+ + +G EG + S E D N+ +Q+G EV V +L I
Sbjct: 281 ---LFGKVSNLTDYGAFVEIEQGIEGLVHVS-EMDWTNKNVHPSKVVQLGDEVEVMILEI 336
Query: 323 SRG--QVTLTMKK 333
G +++L MK+
Sbjct: 337 DEGRRRISLGMKQ 349
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 85/197 (43%), Gaps = 46/197 (23%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS-----DNFVKDVGSIVSVGQEVKVRL 202
G +G V+SI FG F+ DGLVH+S LS + V+ G+EV+ +
Sbjct: 365 GDKISGAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKK----GEEVEAVV 420
Query: 203 IEANAETGRISLTMR--ESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKF 260
+ + E RISL ++ E D D
Sbjct: 421 LAIDVEKERISLGIKQLEGDPFGNFISVND------------------------------ 450
Query: 261 VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVL 320
KG ++G+VK++ GA ++L + EG+LP SE + D ++ + L+ G EV ++
Sbjct: 451 -KGSLVKGSVKSVDAKGAVVALSDEVEGYLPASEFAADRVEDLT--TKLKEGDEVEAVIV 507
Query: 321 RISRGQ--VTLTMKKED 335
+ R + L++K +D
Sbjct: 508 TVDRKNRSIKLSVKAKD 524
>gi|86146555|ref|ZP_01064877.1| hypothetical protein MED222_18163 [Vibrio sp. MED222]
gi|85835612|gb|EAQ53748.1| hypothetical protein MED222_18163 [Vibrio sp. MED222]
Length = 776
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 63/111 (56%), Gaps = 2/111 (1%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L+D FV D +V G VKV+++
Sbjct: 647 DLEPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAGDIVKVKVM 706
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDE 254
E + + RI+L+MR D+ Q + +S + ++ S+ GQ+R E
Sbjct: 707 EVDVQRKRIALSMRMKDEPG--QDNRAQRSSAPRTQSRPNQNSQGGQRRRE 755
>gi|375003364|ref|ZP_09727703.1| S1 RNA binding domain protein [Salmonella enterica subsp. enterica
serovar Infantis str. SARB27]
gi|353074279|gb|EHB40040.1| S1 RNA binding domain protein [Salmonella enterica subsp. enterica
serovar Infantis str. SARB27]
Length = 776
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 50/74 (67%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|240121501|ref|ZP_04734463.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae PID24-1]
gi|385335904|ref|YP_005889851.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae TCDC-NG08107]
gi|317164447|gb|ADV07988.1| 30S ribosomal protein S1 [Neisseria gonorrhoeae TCDC-NG08107]
Length = 559
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 96/193 (49%), Gaps = 33/193 (17%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E+L G+ G V++I +GAF+D G DGL+H++ L+ VK ++ VGQEV+ ++
Sbjct: 186 ENLQEGSVIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKV 244
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
++ + E R+SL M+ Q + SG TRR P R
Sbjct: 245 LKFDQEKQRVSLGMK---------QLGEDPWSG----LTRRY---PQATR---------- 278
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
L G V NLT GAF+ + +G EG + S E D N+ +Q+G EV V +L I
Sbjct: 279 ---LFGKVSNLTDYGAFVEIEQGIEGLVHVS-EMDWTNKNVHPSKVVQLGDEVEVMILEI 334
Query: 323 SRG--QVTLTMKK 333
G +++L MK+
Sbjct: 335 DEGRRRISLGMKQ 347
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 46/197 (23%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS-----DNFVKDVGSIVSVGQEVKVRL 202
G +G V+SI FG F+ DGLVH+S LS + V+ G+EV+ +
Sbjct: 363 GDKISGAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKK----GEEVEAVV 418
Query: 203 IEANAETGRISLTMR--ESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKF 260
+ + E RISL ++ E D D
Sbjct: 419 LAIDVEKERISLGIKQLEGDPFGNFISVND------------------------------ 448
Query: 261 VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVL 320
KG ++G+VK++ GA I+L + EG+LP SE + D ++ + L+ G EV ++
Sbjct: 449 -KGSLVKGSVKSVDAKGAVIALSDEVEGYLPASEFAADRVEDLT--TKLKEGDEVEAVIV 505
Query: 321 RISRGQ--VTLTMKKED 335
+ R + L++K +D
Sbjct: 506 TVDRKNRSIKLSVKAKD 522
>gi|90412697|ref|ZP_01220698.1| hypothetical protein P3TCK_22355 [Photobacterium profundum 3TCK]
gi|90326272|gb|EAS42691.1| hypothetical protein P3TCK_22355 [Photobacterium profundum 3TCK]
Length = 784
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 51/79 (64%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DLIPG G + ++ FGAF+D G DGLVH+S LSD F+ D +V G VKV++
Sbjct: 646 KDLIPGMILEGVITNVTNFGAFVDVGVHQDGLVHISALSDKFISDPREVVKAGDVVKVKV 705
Query: 203 IEANAETGRISLTMRESDD 221
+E + + RI+++MR D+
Sbjct: 706 MEVDLQRKRIAMSMRMGDE 724
>gi|256262203|ref|ZP_05464735.1| RNA-binding S1 domain-containing protein [Brucella melitensis bv. 2
str. 63/9]
gi|384213405|ref|YP_005602488.1| RNA-binding S1 domain-containing protein [Brucella melitensis
M5-90]
gi|384410506|ref|YP_005599126.1| RNA-binding S1 domain-containing protein [Brucella melitensis M28]
gi|384447012|ref|YP_005661230.1| transcription accessory protein [Brucella melitensis NI]
gi|263091899|gb|EEZ16221.1| RNA-binding S1 domain-containing protein [Brucella melitensis bv. 2
str. 63/9]
gi|326411053|gb|ADZ68117.1| RNA-binding S1 domain-containing protein [Brucella melitensis M28]
gi|326554345|gb|ADZ88984.1| RNA-binding S1 domain-containing protein [Brucella melitensis
M5-90]
gi|349745009|gb|AEQ10551.1| transcription accessory protein [Brucella melitensis NI]
Length = 713
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVHVS+L+D FV+D +V G VKVR+
Sbjct: 591 KDLKPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRV 650
Query: 203 IEANAETGRISLTMRE 218
E + RI LTMR+
Sbjct: 651 TEVDVPRKRIGLTMRK 666
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT F G D LEGTV N+ GAF+ + +
Sbjct: 560 VRDIIAELDKPGRDPRPEFKTATFADGIDDIKDLKPGMMLEGTVTNVAAFGAFVDIGVHQ 619
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRV--LRISRGQVTLTMKKE 334
+G + S+ +D + ++ G V VRV + + R ++ LTM+K+
Sbjct: 620 DGLVHVSQLADRFVRDPH--EVVKAGDVVKVRVTEVDVPRKRIGLTMRKD 667
>gi|433655804|ref|YP_007299512.1| transcriptional accessory protein [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433293993|gb|AGB19815.1| transcriptional accessory protein [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 712
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 50/75 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E L PG G VR++ FG F+D G TDGLVH+S +S N++K +VSVG VKV++
Sbjct: 638 EQLKPGMELMGTVRNVVDFGCFVDIGVHTDGLVHISEMSQNYIKHPLDVVSVGDIVKVKV 697
Query: 203 IEANAETGRISLTMR 217
I+ + + RISL+M+
Sbjct: 698 IDVDIDRNRISLSMK 712
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP D M + G +L GTV+N+ G F+ + +G + SE S +
Sbjct: 619 RDPREELPKPILMSDVMTIEQLKPGMELMGTVRNVVDFGCFVDIGVHTDGLVHISEMSQN 678
Query: 299 GFANMMGGSSLQVGQEVSVRVL--RISRGQVTLTMK 332
+ + S VG V V+V+ I R +++L+MK
Sbjct: 679 YIKHPLDVVS--VGDIVKVKVIDVDIDRNRISLSMK 712
>gi|17988737|ref|NP_541370.1| transcription accessory protein [Brucella melitensis bv. 1 str.
16M]
gi|17984550|gb|AAL53634.1| transcription accessory protein (s1 RNA binding domain) [Brucella
melitensis bv. 1 str. 16M]
Length = 703
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVHVS+L+D FV+D +V G VKVR+
Sbjct: 581 KDLKPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRV 640
Query: 203 IEANAETGRISLTMRE 218
E + RI LTMR+
Sbjct: 641 TEVDVPRKRIGLTMRK 656
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT F G D LEGTV N+ GAF+ + +
Sbjct: 550 VRDIIAELDKPGRDPRPEFKTATFADGIDDIKDLKPGMMLEGTVTNVAAFGAFVDIGVHQ 609
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRV--LRISRGQVTLTMKKE 334
+G + S+ +D + ++ G V VRV + + R ++ LTM+K+
Sbjct: 610 DGLVHVSQLADRFVRDPH--EVVKAGDVVKVRVTEVDVPRKRIGLTMRKD 657
>gi|415946702|ref|ZP_11556492.1| Transcriptional accessory protein [Herbaspirillum frisingense
GSF30]
gi|407758196|gb|EKF68060.1| Transcriptional accessory protein [Herbaspirillum frisingense
GSF30]
Length = 783
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 52/78 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL P G V ++ FGAF+D G DGLVH+S LS+ +VKD ++V GQ VKV++
Sbjct: 658 KDLRPDMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNTYVKDPHTVVKAGQVVKVKV 717
Query: 203 IEANAETGRISLTMRESD 220
+E + + RI+LTMR +D
Sbjct: 718 LEVDEKRKRIALTMRLND 735
>gi|429730838|ref|ZP_19265484.1| Tex-like protein [Corynebacterium durum F0235]
gi|429147276|gb|EKX90306.1| Tex-like protein [Corynebacterium durum F0235]
Length = 770
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 68/119 (57%), Gaps = 1/119 (0%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAF+D G DGLVHVS +SD FV D ++V GQ VKV
Sbjct: 636 KVSDLQPGMILEGTVTNVAAFGAFVDVGVHQDGLVHVSAMSDTFVDDPHTVVRSGQVVKV 695
Query: 201 RLIEANAETGRISLTMRESDDI-SKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTT 258
+++E + + RI L++R +D+ +K ++ +G K R R + Q+R++ T
Sbjct: 696 KVMEVDVDRQRIGLSLRLNDEPGAKGPKKSKGGQAGKKPRQQRGNGRSQRQRRNDRNDT 754
>gi|427403196|ref|ZP_18894193.1| 30S ribosomal protein S1 [Massilia timonae CCUG 45783]
gi|425717932|gb|EKU80886.1| 30S ribosomal protein S1 [Massilia timonae CCUG 45783]
Length = 558
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 99/203 (48%), Gaps = 38/203 (18%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E L G TG V++I +GAF+D G DGL+H++ L+ V+ ++SVGQE+ ++
Sbjct: 186 ETLKEGTVVTGVVKNITDYGAFVDLGGI-DGLLHITDLAWRRVRHPSEVLSVGQEITAKV 244
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
++ + E R+SL ++ Q D +G +RR + +
Sbjct: 245 LKYDQEKNRVSLGVK---------QLGDDPWTG----LSRR----------------YPQ 275
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G L G V NLT GAF+ + +G EG + S E D N+ +Q+G EV V VL I
Sbjct: 276 GTRLFGKVTNLTDYGAFVEVEQGIEGLVHVS-EMDWTNKNVAPNKVVQLGDEVEVMVLEI 334
Query: 323 S--RGQVTLTMKK-----EDDVG 338
R +++L MK+ DD G
Sbjct: 335 DEERRRISLGMKQCKANPWDDFG 357
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 83/199 (41%), Gaps = 50/199 (25%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS---------DNFVKDVGSIVSVGQEV 198
G G ++SI FG FI DGLVH+S LS F K G E+
Sbjct: 363 GDKVKGSIKSITDFGVFIGLPGNIDGLVHLSDLSWTEAGEEAVRRFKK--------GDEL 414
Query: 199 KVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTT 258
+ ++ + E R+SL +++ + GD T
Sbjct: 415 EAVVLAIDVERERVSLGVKQLE--------------GDPFNTYSSLND------------ 448
Query: 259 KFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVR 318
KG + GTVK++ GA ISL + EG+L SE S D + G+ L+VG +V
Sbjct: 449 ---KGSLVTGTVKSVEPKGAVISLSDEVEGYLRASEISRDRVED--AGTHLKVGDKVEAL 503
Query: 319 VLRISRG--QVTLTMKKED 335
V+ I R + L++K +D
Sbjct: 504 VINIDRKARSIQLSIKAKD 522
>gi|421557404|ref|ZP_16003309.1| ribosomal protein S1 [Neisseria meningitidis 80179]
gi|433469498|ref|ZP_20426919.1| ribosomal protein S1 [Neisseria meningitidis 98080]
gi|402335042|gb|EJU70317.1| ribosomal protein S1 [Neisseria meningitidis 80179]
gi|432203768|gb|ELK59818.1| ribosomal protein S1 [Neisseria meningitidis 98080]
Length = 561
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 96/193 (49%), Gaps = 33/193 (17%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E+L G G V++I +GAF+D G DGL+H++ L+ VK ++ VGQEV+ ++
Sbjct: 188 ENLQEGFVIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKV 246
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
++ + + R+SL M+ Q + SG TRR + +
Sbjct: 247 LKFDQDKQRVSLGMK---------QLGEDPWSG----LTRR----------------YPQ 277
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G L G V NLT GAF+ + +G EG + S E D N+ +Q+G EV V +L I
Sbjct: 278 GTRLFGKVSNLTDYGAFVEIEQGIEGLVHVS-EMDWTNKNVHPSKVVQLGDEVEVMILEI 336
Query: 323 SRG--QVTLTMKK 333
G +++L MK+
Sbjct: 337 DEGRRRISLGMKQ 349
Score = 49.3 bits (116), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 46/197 (23%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS-----DNFVKDVGSIVSVGQEVKVRL 202
G +G V+SI FG F+ DGLVH+S LS + V+ G+EV+ +
Sbjct: 365 GDKISGAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKK----GEEVEAVV 420
Query: 203 IEANAETGRISLTMR--ESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKF 260
+ + E RISL ++ E D D
Sbjct: 421 LAIDVEKERISLGIKQLEGDPFGNFISVND------------------------------ 450
Query: 261 VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVL 320
KG ++G+VK++ GA I+L + EG+LP SE + D ++ + L+ G EV ++
Sbjct: 451 -KGSLVKGSVKSVDAKGAVIALSDEVEGYLPASEFAADRVEDLT--TKLKEGDEVEAVIV 507
Query: 321 RISRGQ--VTLTMKKED 335
+ R + L++K +D
Sbjct: 508 TVDRKNRSIKLSVKAKD 524
>gi|300718780|ref|YP_003743583.1| transcriptional accessory protein [Erwinia billingiae Eb661]
gi|299064616|emb|CAX61736.1| putative transcriptional accessory protein [Erwinia billingiae
Eb661]
Length = 778
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LSD F+ D +V G VKV+++
Sbjct: 647 DLLPGMVLEGAVTNVTGFGAFVDIGVHQDGLVHISSLSDKFIDDPHKVVKAGDIVKVKVM 706
Query: 204 EANAETGRISLTMR 217
E + + R++LTMR
Sbjct: 707 EVDLQRKRVALTMR 720
>gi|260756348|ref|ZP_05868696.1| transcriptional accessory protein [Brucella abortus bv. 6 str. 870]
gi|260882173|ref|ZP_05893787.1| RNA-binding S1 domain-containing protein [Brucella abortus bv. 9
str. C68]
gi|260676456|gb|EEX63277.1| transcriptional accessory protein [Brucella abortus bv. 6 str. 870]
gi|260871701|gb|EEX78770.1| RNA-binding S1 domain-containing protein [Brucella abortus bv. 9
str. C68]
Length = 713
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVHVS+L+D FV+D +V G VKVR+
Sbjct: 591 KDLKPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRV 650
Query: 203 IEANAETGRISLTMRE 218
E + RI LTMR+
Sbjct: 651 TEVDVPRKRIGLTMRK 666
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT F G D LEGTV N+ GAF+ + +
Sbjct: 560 VRDIIAELDKPGRDPRPEFKTATFADGIDDIKDLKPGMMLEGTVTNVAAFGAFVDIGVHQ 619
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRV--LRISRGQVTLTMKKE 334
+G + S+ +D + ++ G V VRV + + R ++ LTM+K+
Sbjct: 620 DGLVHVSQLADRFVRDPH--EVVKAGDVVKVRVTEVDVPRKRIGLTMRKD 667
>gi|225629363|ref|ZP_03787396.1| RNA-binding S1 domain-containing protein [Brucella ceti str. Cudo]
gi|261220719|ref|ZP_05935000.1| RNA-binding S1 domain-containing protein [Brucella ceti B1/94]
gi|261757097|ref|ZP_06000806.1| RNA-binding S1 domain-containing protein [Brucella sp. F5/99]
gi|265995930|ref|ZP_06108487.1| RNA-binding S1 domain-containing protein [Brucella ceti M490/95/1]
gi|225615859|gb|EEH12908.1| RNA-binding S1 domain-containing protein [Brucella ceti str. Cudo]
gi|260919303|gb|EEX85956.1| RNA-binding S1 domain-containing protein [Brucella ceti B1/94]
gi|261737081|gb|EEY25077.1| RNA-binding S1 domain-containing protein [Brucella sp. F5/99]
gi|262550227|gb|EEZ06388.1| RNA-binding S1 domain-containing protein [Brucella ceti M490/95/1]
Length = 767
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVHVS+L+D FV+D +V G VKVR+
Sbjct: 645 KDLKPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRV 704
Query: 203 IEANAETGRISLTMRE 218
E + RI LTMR+
Sbjct: 705 TEVDVPRKRIGLTMRK 720
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT F G D LEGTV N+ GAF+ + +
Sbjct: 614 VRDIIAELDKPGRDPRPEFKTATFADGIDDIKDLKPGMMLEGTVTNVAAFGAFVDIGVHQ 673
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRV--LRISRGQVTLTMKKE 334
+G + S+ +D + ++ G V VRV + + R ++ LTM+K+
Sbjct: 674 DGLVHVSQLADRFVRDPH--EVVKAGDVVKVRVTEVDVPRKRIGLTMRKD 721
>gi|163845021|ref|YP_001622676.1| hypothetical protein BSUIS_B0897 [Brucella suis ATCC 23445]
gi|163675744|gb|ABY39854.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
Length = 767
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVHVS+L+D FV+D +V G VKVR+
Sbjct: 645 KDLKPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRV 704
Query: 203 IEANAETGRISLTMRE 218
E + RI LTMR+
Sbjct: 705 TEVDVPRKRIGLTMRK 720
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT F G D LEGTV N+ GAF+ + +
Sbjct: 614 VRDIIAELDKPGRDPRPEFKTATFADGIDDIKDLKPGMMLEGTVTNVAAFGAFVDIGVHQ 673
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRV--LRISRGQVTLTMKKE 334
+G + S+ +D + ++ G V VRV + + R ++ LTM+K+
Sbjct: 674 DGLVHVSQLADRFVRDPH--EVVKAGDVVKVRVTEVDVPRKRIGLTMRKD 721
>gi|306846114|ref|ZP_07478676.1| RNA-binding S1 domain-containing protein [Brucella inopinata BO1]
gi|306273365|gb|EFM55226.1| RNA-binding S1 domain-containing protein [Brucella inopinata BO1]
Length = 767
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVHVS+L+D FV+D +V G VKVR+
Sbjct: 645 KDLKPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRV 704
Query: 203 IEANAETGRISLTMRE 218
E + RI LTMR+
Sbjct: 705 TEVDVPRKRIGLTMRK 720
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT F G D LEGTV N+ GAF+ + +
Sbjct: 614 VRDIIAELDKPGRDPRPEFKTATFADGIDDIKDLKPGMMLEGTVTNVAAFGAFVDIGVHQ 673
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRV--LRISRGQVTLTMKKE 334
+G + S+ +D + ++ G V VRV + + R ++ LTM+K+
Sbjct: 674 DGLVHVSQLADRFVRDPH--EVVKAGDVVKVRVTEVDVPRKRIGLTMRKD 721
>gi|261823333|ref|YP_003261439.1| hypothetical protein Pecwa_4104 [Pectobacterium wasabiae WPP163]
gi|261607346|gb|ACX89832.1| Tex-like protein protein-like protein [Pectobacterium wasabiae
WPP163]
Length = 777
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S L+D FV D +V G VKV+++
Sbjct: 646 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADRFVDDPHKVVKAGDIVKVKVM 705
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 706 EVDLQRKRIALTMR 719
>gi|397162999|ref|ZP_10486464.1| protein yhgF [Enterobacter radicincitans DSM 16656]
gi|396095146|gb|EJI92691.1| protein yhgF [Enterobacter radicincitans DSM 16656]
Length = 805
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S L+D FV+D ++V G VKV+++
Sbjct: 647 DLLPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + RI+LTMR
Sbjct: 707 EVDLPRKRIALTMR 720
>gi|417361196|ref|ZP_12135143.1| Transcription accessory protein, partial [Salmonella enterica
subsp. enterica serovar Give str. S5-487]
gi|353584698|gb|EHC44740.1| Transcription accessory protein, partial [Salmonella enterica
subsp. enterica serovar Give str. S5-487]
Length = 739
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 50/74 (67%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|350272165|ref|YP_004883473.1| putative transcription accessory protein [Oscillibacter
valericigenes Sjm18-20]
gi|348597007|dbj|BAL00968.1| putative transcription accessory protein [Oscillibacter
valericigenes Sjm18-20]
Length = 720
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 89/176 (50%), Gaps = 15/176 (8%)
Query: 57 FFSQFQSGSALQHKSALHIISATGINVAVEESDSPAADDDSAGASDIPSDVETSESSSIK 116
F +SG+ L + +A+H S +E + D S D+P ++
Sbjct: 544 FLRVPESGNVLDN-TAVHPESYAAAERLLELTGYTIDDVKSGKLQDLPDRLKAYGEERAA 602
Query: 117 SEAS---PTLAE--SRRSRTAR--KSEMP-PV------KNEDLIPGATFTGKVRSIQPFG 162
+E PTLA+ + + R + E+P PV + +DL PG TG VR++ FG
Sbjct: 603 AECGVGVPTLADVAAELQKPGRDPRDELPKPVLRTDVMEMKDLRPGMVLTGTVRNVIDFG 662
Query: 163 AFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRE 218
F+D G DGLVHVS++ D F++ VSVG VKV ++E + + RISL+M++
Sbjct: 663 VFVDIGVHQDGLVHVSQVCDRFIRHPSEAVSVGDVVKVTVLEVDEKKKRISLSMKQ 718
>gi|260564956|ref|ZP_05835441.1| RNA-binding S1 domain-containing protein [Brucella melitensis bv. 1
str. 16M]
gi|265990197|ref|ZP_06102754.1| RNA-binding S1 domain-containing protein [Brucella melitensis bv. 1
str. Rev.1]
gi|260152599|gb|EEW87692.1| RNA-binding S1 domain-containing protein [Brucella melitensis bv. 1
str. 16M]
gi|263000866|gb|EEZ13556.1| RNA-binding S1 domain-containing protein [Brucella melitensis bv. 1
str. Rev.1]
Length = 713
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVHVS+L+D FV+D +V G VKVR+
Sbjct: 591 KDLKPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRV 650
Query: 203 IEANAETGRISLTMRE 218
E + RI LTMR+
Sbjct: 651 TEVDVPRKRIGLTMRK 666
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT F G D LEGTV N+ GAF+ + +
Sbjct: 560 VRDIIAELDKPGRDPRPEFKTATFADGIDDIKDLKPGMMLEGTVTNVAAFGAFVDIGVHQ 619
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRV--LRISRGQVTLTMKKE 334
+G + S+ +D + ++ G V VRV + + R ++ LTM+K+
Sbjct: 620 DGLVHVSQLADRFVRDPH--EVVKAGDVVKVRVTEVDVPRKRIGLTMRKD 667
>gi|385873799|gb|AFI92319.1| Putative transcriptional accessory protein [Pectobacterium sp.
SCC3193]
Length = 777
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S L+D FV D +V G VKV+++
Sbjct: 646 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADRFVDDPHKVVKAGDIVKVKVM 705
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 706 EVDLQRKRIALTMR 719
>gi|294853853|ref|ZP_06794525.1| RNA-binding S1 domain-containing protein [Brucella sp. NVSL
07-0026]
gi|294819508|gb|EFG36508.1| RNA-binding S1 domain-containing protein [Brucella sp. NVSL
07-0026]
Length = 767
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVHVS+L+D FV+D +V G VKVR+
Sbjct: 645 KDLKPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRV 704
Query: 203 IEANAETGRISLTMRE 218
E + RI LTMR+
Sbjct: 705 TEVDVPRKRIGLTMRK 720
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT F G D LEGTV N+ GAF+ + +
Sbjct: 614 VRDIIAELDKPGRDPRPEFKTATFADGIDDIKDLKPGMMLEGTVTNVAAFGAFVDIGVHQ 673
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRV--LRISRGQVTLTMKKE 334
+G + S+ +D + ++ G V VRV + + R ++ LTM+K+
Sbjct: 674 DGLVHVSQLADRFVRDPH--EVVKAGDVVKVRVTEVDVPRKRIGLTMRKD 721
>gi|261217494|ref|ZP_05931775.1| RNA-binding S1 domain-containing protein [Brucella ceti M13/05/1]
gi|261320369|ref|ZP_05959566.1| RNA-binding S1 domain-containing protein [Brucella ceti M644/93/1]
gi|260922583|gb|EEX89151.1| RNA-binding S1 domain-containing protein [Brucella ceti M13/05/1]
gi|261293059|gb|EEX96555.1| RNA-binding S1 domain-containing protein [Brucella ceti M644/93/1]
Length = 767
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVHVS+L+D FV+D +V G VKVR+
Sbjct: 645 KDLKPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRV 704
Query: 203 IEANAETGRISLTMRE 218
E + RI LTMR+
Sbjct: 705 TEVDVPRKRIGLTMRK 720
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT F G D LEGTV N+ GAF+ + +
Sbjct: 614 VRDIIAELDKPGRDPRPEFKTATFADGIDDIKDLKPGMMLEGTVTNVAAFGAFVDIGVHQ 673
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRV--LRISRGQVTLTMKKE 334
+G + S+ +D + ++ G V VRV + + R ++ LTM+K+
Sbjct: 674 DGLVHVSQLADRFVRDPH--EVVKAGDVVKVRVTEVDVPRKRIGLTMRKD 721
>gi|161620957|ref|YP_001594843.1| RNA-binding S1 domain-containing protein [Brucella canis ATCC
23365]
gi|260567843|ref|ZP_05838312.1| RNA-binding S1 domain-containing protein [Brucella suis bv. 4 str.
40]
gi|261753854|ref|ZP_05997563.1| RNA-binding S1 domain-containing protein [Brucella suis bv. 3 str.
686]
gi|376277591|ref|YP_005153652.1| RNA-binding S1 domain-containing protein [Brucella canis HSK
A52141]
gi|161337768|gb|ABX64072.1| RNA binding S1 domain protein [Brucella canis ATCC 23365]
gi|260154508|gb|EEW89589.1| RNA-binding S1 domain-containing protein [Brucella suis bv. 4 str.
40]
gi|261743607|gb|EEY31533.1| RNA-binding S1 domain-containing protein [Brucella suis bv. 3 str.
686]
gi|363405965|gb|AEW16259.1| RNA-binding S1 domain-containing protein [Brucella canis HSK
A52141]
Length = 767
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVHVS+L+D FV+D +V G VKVR+
Sbjct: 645 KDLKPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRV 704
Query: 203 IEANAETGRISLTMRE 218
E + RI LTMR+
Sbjct: 705 TEVDVPRKRIGLTMRK 720
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT F G D LEGTV N+ GAF+ + +
Sbjct: 614 VRDIIAELDKPGRDPRPEFKTATFADGIDDIKDLKPGMMLEGTVTNVAAFGAFVDIGVHQ 673
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRV--LRISRGQVTLTMKKE 334
+G + S+ +D + ++ G V VRV + + R ++ LTM+K+
Sbjct: 674 DGLVHVSQLADRFVRDPH--EVVKAGDVVKVRVTEVDVPRKRIGLTMRKD 721
>gi|23500631|ref|NP_700071.1| tex protein [Brucella suis 1330]
gi|376278852|ref|YP_005108885.1| tex protein, putative [Brucella suis VBI22]
gi|384223413|ref|YP_005614578.1| tex protein [Brucella suis 1330]
gi|23464273|gb|AAN34076.1| tex protein, putative [Brucella suis 1330]
gi|343384861|gb|AEM20352.1| tex protein, putative [Brucella suis 1330]
gi|358260290|gb|AEU08023.1| tex protein, putative [Brucella suis VBI22]
Length = 767
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVHVS+L+D FV+D +V G VKVR+
Sbjct: 645 KDLKPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRV 704
Query: 203 IEANAETGRISLTMRE 218
E + RI LTMR+
Sbjct: 705 TEVDVPRKRIGLTMRK 720
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT F G D LEGTV N+ GAF+ + +
Sbjct: 614 VRDIIAELDKPGRDPRPEFKTATFADGIDDIKDLKPGMMLEGTVTNVAAFGAFVDIGVHQ 673
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRV--LRISRGQVTLTMKKE 334
+G + S+ +D + ++ G V VRV + + R ++ LTM+K+
Sbjct: 674 DGLVHVSQLADRFVRDPH--EVVKAGDVVKVRVTEVDVPRKRIGLTMRKD 721
>gi|414165119|ref|ZP_11421366.1| competence protein ComEA helix-hairpin-helix repeat region [Afipia
felis ATCC 53690]
gi|410882899|gb|EKS30739.1| competence protein ComEA helix-hairpin-helix repeat region [Afipia
felis ATCC 53690]
Length = 769
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 61/107 (57%), Gaps = 3/107 (2%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVHVS +S FVKD S+V G V+V+++
Sbjct: 646 DLRPGMVLEGAVTNVAAFGAFVDIGVHQDGLVHVSAMSKTFVKDPRSVVKPGDIVRVKVL 705
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQ 250
E + RISL++R D+I Q+ +A D+V R + P +
Sbjct: 706 EVDQPRKRISLSLRLDDEIGAQPQR---SAGTDRVSAKRSFANNPSR 749
>gi|407069633|ref|ZP_11100471.1| hypothetical protein VcycZ_08775 [Vibrio cyclitrophicus ZF14]
Length = 776
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 62/111 (55%), Gaps = 2/111 (1%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L+D FV D +V G VKV+++
Sbjct: 647 DLEPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAGDIVKVKVM 706
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDE 254
E + + RI+L+MR D+ Q + +S + + S+ GQ+R E
Sbjct: 707 EVDVQRKRIALSMRMKDEPG--QDNRAQRSSAPRTQNRPNQNSQGGQRRRE 755
>gi|417352779|ref|ZP_12129910.1| Transcription accessory protein, partial [Salmonella enterica
subsp. enterica serovar Gaminara str. A4-567]
gi|417485859|ref|ZP_12172430.1| Transcription accessory protein, partial [Salmonella enterica
subsp. enterica serovar Rubislaw str. A4-653]
gi|353565671|gb|EHC31377.1| Transcription accessory protein, partial [Salmonella enterica
subsp. enterica serovar Gaminara str. A4-567]
gi|353633530|gb|EHC80312.1| Transcription accessory protein, partial [Salmonella enterica
subsp. enterica serovar Rubislaw str. A4-653]
Length = 733
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 50/74 (67%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|256015665|ref|YP_003105674.1| RNA-binding S1 domain-containing protein [Brucella microti CCM
4915]
gi|255998325|gb|ACU50012.1| RNA-binding S1 domain-containing protein [Brucella microti CCM
4915]
Length = 767
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVHVS+L+D FV+D +V G VKVR+
Sbjct: 645 KDLKPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRV 704
Query: 203 IEANAETGRISLTMRE 218
E + RI LTMR+
Sbjct: 705 TEVDVPRKRIGLTMRK 720
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT F G D LEGTV N+ GAF+ + +
Sbjct: 614 VRDIIAELDKPGRDPRPEFKTATFADGIDDIKDLKPGMMLEGTVTNVAAFGAFVDIGVHQ 673
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRV--LRISRGQVTLTMKKE 334
+G + S+ +D + ++ G V VRV + + R ++ LTM+K+
Sbjct: 674 DGLVHVSQLADRFVRDPH--EVVKAGDVVKVRVTEVDVPRKRIGLTMRKD 721
>gi|261318435|ref|ZP_05957632.1| RNA-binding S1 domain-containing protein [Brucella pinnipedialis
B2/94]
gi|261322869|ref|ZP_05962066.1| RNA-binding S1 domain-containing protein [Brucella neotomae 5K33]
gi|265986234|ref|ZP_06098791.1| RNA-binding S1 domain-containing protein [Brucella pinnipedialis
M292/94/1]
gi|340792678|ref|YP_004758142.1| RNA-binding S1 domain-containing protein [Brucella pinnipedialis
B2/94]
gi|261297658|gb|EEY01155.1| RNA-binding S1 domain-containing protein [Brucella pinnipedialis
B2/94]
gi|261298849|gb|EEY02346.1| RNA-binding S1 domain-containing protein [Brucella neotomae 5K33]
gi|264658431|gb|EEZ28692.1| RNA-binding S1 domain-containing protein [Brucella pinnipedialis
M292/94/1]
gi|340561137|gb|AEK56374.1| RNA-binding S1 domain-containing protein [Brucella pinnipedialis
B2/94]
Length = 767
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVHVS+L+D FV+D +V G VKVR+
Sbjct: 645 KDLKPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRV 704
Query: 203 IEANAETGRISLTMRE 218
E + RI LTMR+
Sbjct: 705 TEVDVPRKRIGLTMRK 720
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT F G D LEGTV N+ GAF+ + +
Sbjct: 614 VRDIIAELDKPGRDPRPEFKTATFADGIDDIKDLKPGMMLEGTVTNVAAFGAFVDIGVHQ 673
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRV--LRISRGQVTLTMKKE 334
+G + S+ +D + ++ G V VRV + + R ++ LTM+K+
Sbjct: 674 DGLVHVSQLADRFVRDPH--EVVKAGDVVKVRVTEVDVPRKRIGLTMRKD 721
>gi|418052345|ref|ZP_12690427.1| Tex-like protein [Mycobacterium rhodesiae JS60]
gi|353182288|gb|EHB47823.1| Tex-like protein [Mycobacterium rhodesiae JS60]
Length = 757
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 60/109 (55%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL G G V ++ FGAF+D G DGLVHVS +SD +V D +V GQ V+V
Sbjct: 624 KVADLKVGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSDRYVSDPHEVVRSGQVVRV 683
Query: 201 RLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPG 249
+++E + + RI LT+R D+ + Q + G+ R RR ++ G
Sbjct: 684 KVLEVDVDRQRIGLTLRLGDEPKRQQATRSERGGGNPGRGERRQPARGG 732
>gi|304397826|ref|ZP_07379702.1| Tex-like protein [Pantoea sp. aB]
gi|304354537|gb|EFM18908.1| Tex-like protein [Pantoea sp. aB]
Length = 775
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LSD FV+D +V G VKV+++
Sbjct: 646 DLTPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHQVVKAGDIVKVKVM 705
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 706 EVDLQRKRIALTMR 719
>gi|255067151|ref|ZP_05319006.1| ribosomal protein S1 [Neisseria sicca ATCC 29256]
gi|340362824|ref|ZP_08685190.1| 30S ribosomal protein S1 [Neisseria macacae ATCC 33926]
gi|349611003|ref|ZP_08890319.1| 30S ribosomal protein S1 [Neisseria sp. GT4A_CT1]
gi|419798432|ref|ZP_14323842.1| ribosomal protein S1 [Neisseria sicca VK64]
gi|255048519|gb|EET43983.1| ribosomal protein S1 [Neisseria sicca ATCC 29256]
gi|339886982|gb|EGQ76585.1| 30S ribosomal protein S1 [Neisseria macacae ATCC 33926]
gi|348615033|gb|EGY64565.1| 30S ribosomal protein S1 [Neisseria sp. GT4A_CT1]
gi|385694654|gb|EIG25242.1| ribosomal protein S1 [Neisseria sicca VK64]
Length = 561
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 97/193 (50%), Gaps = 33/193 (17%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E+L G+ G V++I +GAF+D G DGL+H++ L+ VK ++ VGQEV+ ++
Sbjct: 188 ENLQEGSIIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKV 246
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
++ + + R+SL M+ Q + SG TRR + +
Sbjct: 247 LKFDQDKQRVSLGMK---------QLGEDPWSG----LTRR----------------YPQ 277
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G L G V NLT GAF+ + +G EG + S E D N+ +Q+G EV V +L I
Sbjct: 278 GTRLFGKVSNLTDYGAFVEIEQGIEGLVHVS-EMDWTNKNVHPSKVVQLGDEVEVMILEI 336
Query: 323 --SRGQVTLTMKK 333
R +++L MK+
Sbjct: 337 DEDRRRISLGMKQ 349
Score = 47.0 bits (110), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 85/197 (43%), Gaps = 46/197 (23%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS-----DNFVKDVGSIVSVGQEVKVRL 202
G +G V+SI FG F+ DGLVH+S LS + V+ G+EV+ +
Sbjct: 365 GDKISGAVKSITDFGVFVGLPGGIDGLVHLSDLSWTEAGEEAVRKYKK----GEEVEAVV 420
Query: 203 IEANAETGRISLTMR--ESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKF 260
+ + + RISL ++ E D D
Sbjct: 421 LAIDVDKERISLGIKQLEGDPFGNFISVND------------------------------ 450
Query: 261 VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVL 320
KG ++G+VK++ GA ++L + EG+LP SE + D ++ + L+ G EV ++
Sbjct: 451 -KGSLVKGSVKSVDAKGAVVALSDEVEGYLPASEFAADRVEDLT--TKLKEGDEVEAVIV 507
Query: 321 RISRGQ--VTLTMKKED 335
+ R + L++K +D
Sbjct: 508 TVDRKNRSIRLSVKAKD 524
>gi|89076064|ref|ZP_01162424.1| hypothetical protein SKA34_16590 [Photobacterium sp. SKA34]
gi|89048216|gb|EAR53798.1| hypothetical protein SKA34_16590 [Photobacterium sp. SKA34]
Length = 772
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 65/112 (58%), Gaps = 6/112 (5%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DLIPG G + ++ FGAF+D G DGLVH+S LSD F+ D +V G VKV++
Sbjct: 646 KDLIPGMVLEGVITNVTNFGAFVDVGVHQDGLVHISALSDKFISDPREVVKAGDVVKVKV 705
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKV-RTTRRSTSKPGQKRD 253
+E + RI ++MR SD+ Q+K A D R R+ S+P ++RD
Sbjct: 706 MEVDLPRKRIGMSMRLSDEPG---QEKPARQPRDNAPRPARQ--SQPTRQRD 752
>gi|359442590|ref|ZP_09232455.1| uncharacterized protein [Pseudoalteromonas sp. BSi20429]
gi|358035598|dbj|GAA68704.1| uncharacterized protein [Pseudoalteromonas sp. BSi20429]
Length = 775
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 50/82 (60%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAF+D G DGLVH+S +++ F+ D +V G VKV
Sbjct: 642 KISDLKPGMILEGVVSNVANFGAFVDVGVHQDGLVHISAITNKFISDPREVVKAGDIVKV 701
Query: 201 RLIEANAETGRISLTMRESDDI 222
+++E +A RIS TMR DDI
Sbjct: 702 KVVEVDAARKRISFTMRLDDDI 723
>gi|325962327|ref|YP_004240233.1| competence protein ComEA-like protein with helix-hairpin-helix
repeat region [Arthrobacter phenanthrenivorans Sphe3]
gi|323468414|gb|ADX72099.1| competence protein ComEA-like protein with helix-hairpin-helix
repeat region [Arthrobacter phenanthrenivorans Sphe3]
Length = 805
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 52/81 (64%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAF+D G DGLVHVS +S+ FV D +V GQ V+V
Sbjct: 656 KISDLKPGMVLEGTVTNVAAFGAFVDVGVHQDGLVHVSAMSNRFVSDPREVVKSGQVVRV 715
Query: 201 RLIEANAETGRISLTMRESDD 221
+++EA+ + RISLT+R D+
Sbjct: 716 KVLEADPDRKRISLTLRLDDE 736
>gi|260771983|ref|ZP_05880900.1| transcription accessory protein [Vibrio metschnikovii CIP 69.14]
gi|260612850|gb|EEX38052.1| transcription accessory protein [Vibrio metschnikovii CIP 69.14]
Length = 773
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 69/112 (61%), Gaps = 4/112 (3%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL G G V ++ FGAF+D G DGLVH+S L+D F+ D +V G VKV++
Sbjct: 646 KDLEVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFIADPRDVVKAGDIVKVKV 705
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDE 254
+E +A+ RI+L+MR +D+ + + + ++++ R+ TS+P ++RDE
Sbjct: 706 MEVDAQRKRIALSMRLNDEPGQESRGQRSSSTTQ----ARQQTSQPPRRRDE 753
>gi|392535634|ref|ZP_10282771.1| hypothetical protein ParcA3_16617 [Pseudoalteromonas arctica A
37-1-2]
Length = 775
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 50/82 (60%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAF+D G DGLVH+S +++ F+ D +V G VKV
Sbjct: 642 KISDLKPGMILEGVVSNVANFGAFVDVGVHQDGLVHISAITNKFISDPREVVKAGDIVKV 701
Query: 201 RLIEANAETGRISLTMRESDDI 222
+++E +A RIS TMR DDI
Sbjct: 702 KVVEVDAARKRISFTMRLDDDI 723
>gi|261750596|ref|ZP_05994305.1| RNA-binding S1 domain-containing protein [Brucella suis bv. 5 str.
513]
gi|261740349|gb|EEY28275.1| RNA-binding S1 domain-containing protein [Brucella suis bv. 5 str.
513]
Length = 767
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVHVS+L+D FV+D +V G VKVR+
Sbjct: 645 KDLKPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRV 704
Query: 203 IEANAETGRISLTMRE 218
E + RI LTMR+
Sbjct: 705 TEVDVPRKRIGLTMRK 720
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT F G D LEGTV N+ GAF+ + +
Sbjct: 614 VRDIIAELDKPGRDPRPEFKTATFADGIDDIKDLKPGMMLEGTVTNVAAFGAFVDIGVHQ 673
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRV--LRISRGQVTLTMKKE 334
+G + S+ +D + ++ G V VRV + + R ++ LTM+K+
Sbjct: 674 DGLVHVSQLADRFVRDPH--EVVKAGDVVKVRVTEVDVPRKRIGLTMRKD 721
>gi|440285798|ref|YP_007338563.1| transcriptional accessory protein [Enterobacteriaceae bacterium
strain FGI 57]
gi|440045320|gb|AGB76378.1| transcriptional accessory protein [Enterobacteriaceae bacterium
strain FGI 57]
Length = 777
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S L+D FV+D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + RI+LTMR
Sbjct: 707 EVDLPRKRIALTMR 720
Score = 39.3 bits (90), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 15/105 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT +F G + LEG V N+T GAF+ + ++G + S
Sbjct: 624 KPGRDPRPEFKTARFADGVETMNDLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSL 683
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKKEDDVG 338
+D + + ++ G V V+VL + R ++ LTM+ ++ G
Sbjct: 684 ADKFVED--PHTVVKAGDIVKVKVLEVDLPRKRIALTMRLDEQPG 726
>gi|417951260|ref|ZP_12594367.1| hypothetical protein VISP3789_20168 [Vibrio splendidus ATCC 33789]
gi|342805212|gb|EGU40490.1| hypothetical protein VISP3789_20168 [Vibrio splendidus ATCC 33789]
Length = 776
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 63/111 (56%), Gaps = 2/111 (1%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L+D FV D +V G VKV+++
Sbjct: 647 DLEPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAGDIVKVKVM 706
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDE 254
E + + RI+L+MR D+ Q + +S + ++ S+ GQ+R E
Sbjct: 707 EVDVQRKRIALSMRMKDEPG--QDNRAQRSSAPRTQSRPNQHSQGGQRRRE 755
>gi|417840581|ref|ZP_12486707.1| putative tex-like protein [Haemophilus haemolyticus M19107]
gi|341947589|gb|EGT74235.1| putative tex-like protein [Haemophilus haemolyticus M19107]
Length = 770
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 57/100 (57%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LSD FV+D +V G VKV+++
Sbjct: 647 DLKPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGDIVKVKVL 706
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRR 243
E + RI+LTMR + +K + D T S T+R
Sbjct: 707 EVDVPRKRIALTMRLDESAAKNDGKFDRTLSARPRANTQR 746
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 15/111 (13%)
Query: 243 RSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLP 291
+ KPG+ R E KT F +G + LEGTV N+T GAF+ + ++G +
Sbjct: 620 KELEKPGRDPRGEFKTAVFAEGVEEITDLKPGMILEGTVTNVTNFGAFVDIGVHQDGLVH 679
Query: 292 TSEESDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKKEDDVGSN 340
S SD + ++ G V V+VL + R ++ LTM+ ++ N
Sbjct: 680 ISSLSDKFVED--PHQVVKTGDIVKVKVLEVDVPRKRIALTMRLDESAAKN 728
>gi|372275756|ref|ZP_09511792.1| putative transcriptional accessory protein [Pantoea sp. SL1_M5]
Length = 775
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LSD FV+D +V G VKV+++
Sbjct: 646 DLTPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHQVVKAGDIVKVKVM 705
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 706 EVDLQRKRIALTMR 719
>gi|404396158|ref|ZP_10987953.1| competence protein ComEA helix-hairpin-helix repeat region
[Ralstonia sp. 5_2_56FAA]
gi|348614909|gb|EGY64445.1| competence protein ComEA helix-hairpin-helix repeat region
[Ralstonia sp. 5_2_56FAA]
Length = 777
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 56/95 (58%), Gaps = 3/95 (3%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL P G V ++ FGAFID G DGLVHVS LS FV+D +V GQ VKV++
Sbjct: 655 KDLQPRMVLEGVVTNVAAFGAFIDIGVHQDGLVHVSALSTKFVRDPHEVVKPGQIVKVKV 714
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDK 237
+E + + RI LTMR SD+ Q T +GD+
Sbjct: 715 MEVDVKRNRIGLTMRLSDEPG---QAAARTGNGDR 746
>gi|390436342|ref|ZP_10224880.1| transcriptional accessory protein [Pantoea agglomerans IG1]
Length = 775
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LSD FV+D +V G VKV+++
Sbjct: 646 DLTPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHQVVKAGDIVKVKVM 705
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 706 EVDLQRKRIALTMR 719
>gi|416699440|ref|ZP_11828659.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. MB110209-0055]
gi|323224272|gb|EGA08561.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Montevideo str. MB110209-0055]
Length = 637
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 50/74 (67%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 508 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 567
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 568 EVDLQRKRIALTMR 581
>gi|256828106|ref|YP_003156834.1| RNA binding S1 domain-containing protein [Desulfomicrobium
baculatum DSM 4028]
gi|256577282|gb|ACU88418.1| RNA binding S1 domain protein [Desulfomicrobium baculatum DSM 4028]
Length = 710
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 50/74 (67%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG T G V ++ FGAF+D G DGLVH+S L+D +V D G +V GQ+V+V ++
Sbjct: 634 DLHPGMTVPGIVTNVTRFGAFVDVGVHQDGLVHISNLADRYVSDPGEVVRAGQQVQVTVL 693
Query: 204 EANAETGRISLTMR 217
E +A+ RI L+MR
Sbjct: 694 EVDAKRRRIGLSMR 707
>gi|157676014|emb|CAP07848.1| putative transcriptional accessory protein [Neisseria macacae]
Length = 757
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 12/110 (10%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL G G V ++ FGAF+D G DGLVH+S LS+ FV+D +V G VKV+++
Sbjct: 636 DLQVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAGDVVKVKVL 695
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRD 253
E +A RI+LTMR D+ +G + R S ++P ++RD
Sbjct: 696 EVDAARKRIALTMRLDDE------------AGGTAKGNRSSETRPQERRD 733
>gi|332533241|ref|ZP_08409108.1| transcription accessory protein [Pseudoalteromonas haloplanktis
ANT/505]
gi|332037320|gb|EGI73775.1| transcription accessory protein [Pseudoalteromonas haloplanktis
ANT/505]
Length = 797
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 50/82 (60%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAF+D G DGLVH+S +++ F+ D +V G VKV
Sbjct: 642 KISDLKPGMILEGVVSNVANFGAFVDVGVHQDGLVHISAITNKFISDPREVVKAGDIVKV 701
Query: 201 RLIEANAETGRISLTMRESDDI 222
+++E +A RIS TMR DDI
Sbjct: 702 KVVEVDAARKRISFTMRLDDDI 723
>gi|308188423|ref|YP_003932554.1| RNA binding protein [Pantoea vagans C9-1]
gi|308058933|gb|ADO11105.1| putative RNA binding protein [Pantoea vagans C9-1]
Length = 775
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LSD FV+D +V G VKV+++
Sbjct: 646 DLTPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHQVVKAGDIVKVKVM 705
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 706 EVDLQRKRIALTMR 719
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 15/105 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT +F +G + LEGTV N+T GAF+ + ++G + S
Sbjct: 623 KPGRDPRPEFKTAQFAEGVETLNDLTPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSL 682
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDDVG 338
SD + ++ G V V+V+ + R ++ LTM+ ++ G
Sbjct: 683 SDRFVED--PHQVVKAGDIVKVKVMEVDLQRKRIALTMRLDEQPG 725
>gi|284028353|ref|YP_003378284.1| RNA binding S1 domain-containing protein [Kribbella flavida DSM
17836]
gi|283807646|gb|ADB29485.1| RNA binding S1 domain protein [Kribbella flavida DSM 17836]
Length = 815
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 51/82 (62%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G+V ++ FGAFID G DGL HVS LS N+VKD +V G VKV
Sbjct: 646 KIADLKPGMRLEGQVTNVAAFGAFIDIGVHQDGLAHVSALSKNYVKDPREVVKPGDIVKV 705
Query: 201 RLIEANAETGRISLTMRESDDI 222
+++E + RISLT+R D+I
Sbjct: 706 KVLEVDIPRQRISLTLRLDDEI 727
>gi|261365785|ref|ZP_05978668.1| ribosomal protein S1 [Neisseria mucosa ATCC 25996]
gi|288565693|gb|EFC87253.1| ribosomal protein S1 [Neisseria mucosa ATCC 25996]
Length = 561
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 97/193 (50%), Gaps = 33/193 (17%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E+L G+ G V++I +GAF+D G DGL+H++ L+ VK ++ VGQEV+ ++
Sbjct: 188 ENLQEGSIIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKV 246
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
++ + + R+SL M+ Q + SG TRR + +
Sbjct: 247 LKFDQDKQRVSLGMK---------QLGEDPWSG----LTRR----------------YPQ 277
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G L G V NLT GAF+ + +G EG + S E D N+ +Q+G EV V +L I
Sbjct: 278 GTRLFGKVSNLTDYGAFVEIEQGIEGLVHVS-EMDWTNKNVHPSKVVQLGDEVEVMILEI 336
Query: 323 --SRGQVTLTMKK 333
R +++L MK+
Sbjct: 337 DEDRRRISLGMKQ 349
Score = 46.6 bits (109), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 85/197 (43%), Gaps = 46/197 (23%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS-----DNFVKDVGSIVSVGQEVKVRL 202
G +G V+SI FG F+ DGLVH+S LS + V+ G+EV+ +
Sbjct: 365 GDKISGAVKSITDFGVFVGLPGGIDGLVHLSDLSWTEAGEEAVRKYKK----GEEVEAVV 420
Query: 203 IEANAETGRISLTMR--ESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKF 260
+ + + RISL ++ E D D
Sbjct: 421 LAIDVDKERISLGIKQLEGDPFGNFISVND------------------------------ 450
Query: 261 VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVL 320
KG ++G+VK++ GA ++L + EG+LP SE + D ++ + L+ G EV ++
Sbjct: 451 -KGSLVKGSVKSVDAKGAVVALSDEVEGYLPASEFAADRVEDLT--TKLKEGDEVEAVIV 507
Query: 321 RISRGQ--VTLTMKKED 335
+ R + L++K +D
Sbjct: 508 TVDRKNRSIRLSVKAKD 524
>gi|309782606|ref|ZP_07677329.1| S1 RNA binding domain protein [Ralstonia sp. 5_7_47FAA]
gi|308918697|gb|EFP64371.1| S1 RNA binding domain protein [Ralstonia sp. 5_7_47FAA]
Length = 788
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 56/95 (58%), Gaps = 3/95 (3%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL P G V ++ FGAFID G DGLVHVS LS FV+D +V GQ VKV++
Sbjct: 666 KDLQPRMVLEGVVTNVAAFGAFIDIGVHQDGLVHVSALSTKFVRDPHEVVKPGQIVKVKV 725
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDK 237
+E + + RI LTMR SD+ Q T +GD+
Sbjct: 726 MEVDVKRNRIGLTMRLSDEPG---QAAARTGNGDR 757
>gi|311277659|ref|YP_003939890.1| Tex-like protein [Enterobacter cloacae SCF1]
gi|308746854|gb|ADO46606.1| Tex-like protein protein [Enterobacter cloacae SCF1]
Length = 777
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S L+D FV+D ++V G VKV+++
Sbjct: 647 DLLPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + RI+LTMR
Sbjct: 707 EVDLPRKRIALTMR 720
>gi|340363919|ref|ZP_08686230.1| YhgF like protein [Neisseria macacae ATCC 33926]
gi|339884623|gb|EGQ74393.1| YhgF like protein [Neisseria macacae ATCC 33926]
Length = 757
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 12/110 (10%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL G G V ++ FGAF+D G DGLVH+S LS+ FV+D +V G VKV+++
Sbjct: 636 DLQVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAGDVVKVKVL 695
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRD 253
E +A RI+LTMR D+ +G + R S ++P ++RD
Sbjct: 696 EVDAARKRIALTMRLDDE------------AGGTAKGNRSSETRPQERRD 733
>gi|437832476|ref|ZP_20844437.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. SARB17]
gi|435302729|gb|ELO78677.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. SARB17]
Length = 800
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 50/74 (67%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|218708217|ref|YP_002415838.1| hypothetical protein VS_0153 [Vibrio splendidus LGP32]
gi|218321236|emb|CAV17186.1| hypothetical protein VS_0153 [Vibrio splendidus LGP32]
Length = 776
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 62/111 (55%), Gaps = 2/111 (1%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L+D FV D +V G VKV+++
Sbjct: 647 DLEPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAGDIVKVKVM 706
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDE 254
E + + RI+L+MR D+ Q + +S + + S+ GQ+R E
Sbjct: 707 EVDVQRKRIALSMRMKDEPG--QDNRAQRSSAPRTQNRPNQNSQGGQRRRE 755
>gi|257095432|ref|YP_003169073.1| RNA-binding S1 domain-containing protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257047956|gb|ACV37144.1| RNA binding S1 domain protein [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
Length = 774
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 53/80 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S ++D FVKD ++V G VKV++
Sbjct: 657 KDLQPGMILEGVVTNVANFGAFVDIGVHQDGLVHISAIADRFVKDPRAVVKAGDVVKVKV 716
Query: 203 IEANAETGRISLTMRESDDI 222
+E + RI+L+MR +D++
Sbjct: 717 LEVDLARQRIALSMRLADEV 736
>gi|350562493|ref|ZP_08931327.1| Tex-like protein [Thioalkalivibrio thiocyanoxidans ARh 4]
gi|349779435|gb|EGZ33781.1| Tex-like protein [Thioalkalivibrio thiocyanoxidans ARh 4]
Length = 789
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 63/114 (55%), Gaps = 8/114 (7%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S L+D FVKD +V+ G VKV++
Sbjct: 649 KDLKPGMVLEGTVTNVTNFGAFVDIGVHQDGLVHISALADRFVKDPHEVVAPGDIVKVKV 708
Query: 203 IEANAETGRISLTMRESD----DISKLQQQKDATA----SGDKVRTTRRSTSKP 248
+E + RI+LT R D S+ +DA A GD+ + +R KP
Sbjct: 709 LEVDLARKRIALTRRLEDPAEPGTSRGPASRDAKAPRGPRGDRNKAAQRRPGKP 762
>gi|329122447|ref|ZP_08251034.1| YhgF like protein [Haemophilus aegyptius ATCC 11116]
gi|327473729|gb|EGF19148.1| YhgF like protein [Haemophilus aegyptius ATCC 11116]
Length = 773
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 56/100 (56%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LSD FV+D +V G VKV+++
Sbjct: 650 DLKPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGNIVKVKVL 709
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRR 243
E + RI+LTMR + K + D T S T+R
Sbjct: 710 EVDVSRKRIALTMRLDESAVKNDGKSDRTLSARPRGNTQR 749
Score = 42.4 bits (98), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 15/107 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT F +G + LEGTV N+T GAF+ + ++G + S
Sbjct: 627 KPGRDPRGEFKTAVFAEGVEEITDLKPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSL 686
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKEDDVGSN 340
SD + ++ G V V+VL +SR ++ LTM+ ++ N
Sbjct: 687 SDKFVED--PHQVVKTGNIVKVKVLEVDVSRKRIALTMRLDESAVKN 731
>gi|427705594|ref|YP_007047971.1| Tex-like protein [Nostoc sp. PCC 7107]
gi|427358099|gb|AFY40821.1| Tex-like protein [Nostoc sp. PCC 7107]
Length = 719
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL G G V ++ FGAF+D G DGLVH+S+L+D FV D IV VGQ VKVR++
Sbjct: 642 DLQIGMELEGIVTNVANFGAFVDIGVHQDGLVHISQLADRFVDDPKLIVKVGQVVKVRVL 701
Query: 204 EANAETGRISLTMR 217
E N + RISL+M+
Sbjct: 702 EVNEKLKRISLSMK 715
>gi|315128002|ref|YP_004070005.1| hypothetical protein PSM_A2941 [Pseudoalteromonas sp. SM9913]
gi|315016516|gb|ADT69854.1| hypothetical protein PSM_A2941 [Pseudoalteromonas sp. SM9913]
Length = 774
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 50/82 (60%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAF+D G DGLVH+S +++ F+ D +V G VKV
Sbjct: 642 KISDLKPGMILEGVVSNVANFGAFVDVGVHQDGLVHISAITNKFISDPREVVKAGDIVKV 701
Query: 201 RLIEANAETGRISLTMRESDDI 222
+++E +A RIS TMR DDI
Sbjct: 702 KVVEVDAARKRISFTMRLDDDI 723
>gi|89094331|ref|ZP_01167272.1| conserved protein with nucleic acid-binding protein-like domain
(Transcriptional accessory protein) [Neptuniibacter
caesariensis]
gi|89081390|gb|EAR60621.1| conserved protein with nucleic acid-binding protein-like domain
(Transcriptional accessory protein) [Oceanospirillum sp.
MED92]
Length = 714
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 51/77 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL G G + ++ FGAF+D G DGLVH+S+L++ FVKD +VS GQ V VR++
Sbjct: 638 DLQVGMRLEGTISNVTNFGAFVDLGVHQDGLVHISQLANKFVKDPHDVVSPGQIVTVRVL 697
Query: 204 EANAETGRISLTMRESD 220
E + + RISLTMR +D
Sbjct: 698 EVDEKRKRISLTMRTAD 714
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 62/130 (47%), Gaps = 14/130 (10%)
Query: 215 TMRESDDISK---LQQQKDATASGDKVRTTRRSTSKPGQKRDEMKT-TKFVKGQDLEGTV 270
++R +D IS L KD DK R K + +D ++T T G LEGT+
Sbjct: 590 SLRPADYISDQFGLYTVKDIICELDKPGRDPRPEFKTAKLQDGVETITDLQVGMRLEGTI 649
Query: 271 KNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQV---GQEVSVRVLRI--SRG 325
N+T GAF+ L ++G + S+ AN V GQ V+VRVL + R
Sbjct: 650 SNVTNFGAFVDLGVHQDGLVHISQ-----LANKFVKDPHDVVSPGQIVTVRVLEVDEKRK 704
Query: 326 QVTLTMKKED 335
+++LTM+ D
Sbjct: 705 RISLTMRTAD 714
>gi|429739537|ref|ZP_19273291.1| Tex-like protein [Prevotella saccharolytica F0055]
gi|429156926|gb|EKX99545.1| Tex-like protein [Prevotella saccharolytica F0055]
Length = 709
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 50/75 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DLIPG G V +I FGAF+D G DGLVH+S+L++ FV D +V + Q V+VR++
Sbjct: 635 DLIPGMILPGIVTNITKFGAFVDIGVHQDGLVHISQLANRFVSDPTEVVKLHQHVQVRVL 694
Query: 204 EANAETGRISLTMRE 218
+ + RISL+MR+
Sbjct: 695 DIDIRRNRISLSMRD 709
>gi|319775511|ref|YP_004137999.1| transcriptional accessory protein [Haemophilus influenzae F3047]
gi|317450102|emb|CBY86316.1| predicted transcriptional accessory protein [Haemophilus influenzae
F3047]
Length = 770
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 56/100 (56%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LSD FV+D +V G VKV+++
Sbjct: 647 DLKPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGNIVKVKVL 706
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRR 243
E + RI+LTMR + K + D T S T+R
Sbjct: 707 EVDVSRKRIALTMRLDESAVKNDGKSDRTLSARPRGNTQR 746
Score = 42.4 bits (98), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 15/107 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT F +G + LEGTV N+T GAF+ + ++G + S
Sbjct: 624 KPGRDPRGEFKTAVFAEGVEEITDLKPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSL 683
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKEDDVGSN 340
SD + ++ G V V+VL +SR ++ LTM+ ++ N
Sbjct: 684 SDKFVED--PHQVVKTGNIVKVKVLEVDVSRKRIALTMRLDESAVKN 728
>gi|265992696|ref|ZP_06105253.1| RNA-binding S1 domain-containing protein [Brucella melitensis bv. 3
str. Ether]
gi|262763566|gb|EEZ09598.1| RNA-binding S1 domain-containing protein [Brucella melitensis bv. 3
str. Ether]
Length = 713
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVHVS+L+D FV+D +V G VKVR+
Sbjct: 591 KDLKPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRV 650
Query: 203 IEANAETGRISLTMRE 218
E + RI LTMR+
Sbjct: 651 TEVDVLRKRIGLTMRK 666
Score = 40.4 bits (93), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT F G D LEGTV N+ GAF+ + +
Sbjct: 560 VRDIIAELDKPGRDPRPEFKTATFADGIDDIKDLKPGMMLEGTVTNVAAFGAFVDIGVHQ 619
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRV--LRISRGQVTLTMKKE 334
+G + S+ +D + ++ G V VRV + + R ++ LTM+K+
Sbjct: 620 DGLVHVSQLADRFVRDPH--EVVKAGDVVKVRVTEVDVLRKRIGLTMRKD 667
>gi|323135904|ref|ZP_08070987.1| Tex-like protein-like [Methylocystis sp. ATCC 49242]
gi|322398995|gb|EFY01514.1| Tex-like protein-like [Methylocystis sp. ATCC 49242]
Length = 770
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 49/77 (63%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG T G V ++ FGAF+D G DGLVH+S LS FVKD S+V G VKV+++
Sbjct: 643 DLKPGMTLEGVVTNVAAFGAFVDIGVHQDGLVHISALSKEFVKDPRSVVKPGDIVKVKVM 702
Query: 204 EANAETGRISLTMRESD 220
E + RISL+MR D
Sbjct: 703 EVDVPRKRISLSMRLDD 719
>gi|291535706|emb|CBL08818.1| Transcriptional accessory protein [Roseburia intestinalis M50/1]
Length = 752
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 52/75 (69%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G VR++ FGAF+D G DGLVH+S++SD F+K +VSVG V+V++
Sbjct: 675 KDLKPGMILKGTVRNVIDFGAFVDIGVHQDGLVHISQMSDRFIKHPLEVVSVGDIVEVKV 734
Query: 203 IEANAETGRISLTMR 217
++ + + RI+LTM+
Sbjct: 735 LDVDLKKQRIALTMK 749
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP + D ++ G L+GTV+N+ GAF+ + ++G + S+ SD
Sbjct: 656 RDPREDMPKPILRSDVLEMKDLKPGMILKGTVRNVIDFGAFVDIGVHQDGLVHISQMSDR 715
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMK 332
+ + + VG V V+VL + + ++ LTMK
Sbjct: 716 FIKHPL--EVVSVGDIVEVKVLDVDLKKQRIALTMK 749
>gi|240146571|ref|ZP_04745172.1| protein YhgF [Roseburia intestinalis L1-82]
gi|257201302|gb|EEU99586.1| protein YhgF [Roseburia intestinalis L1-82]
gi|291540980|emb|CBL14091.1| Transcriptional accessory protein [Roseburia intestinalis XB6B4]
Length = 752
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 52/75 (69%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G VR++ FGAF+D G DGLVH+S++SD F+K +VSVG V+V++
Sbjct: 675 KDLKPGMILKGTVRNVIDFGAFVDIGVHQDGLVHISQMSDRFIKHPLEVVSVGDIVEVKV 734
Query: 203 IEANAETGRISLTMR 217
++ + + RI+LTM+
Sbjct: 735 LDVDLKKQRIALTMK 749
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP + D ++ G L+GTV+N+ GAF+ + ++G + S+ SD
Sbjct: 656 RDPREDMPKPILRSDVLEMKDLKPGMILKGTVRNVIDFGAFVDIGVHQDGLVHISQMSDR 715
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMK 332
+ + + VG V V+VL + + ++ LTMK
Sbjct: 716 FIKHPL--EVVSVGDIVEVKVLDVDLKKQRIALTMK 749
>gi|149201797|ref|ZP_01878771.1| S1 RNA binding domain protein [Roseovarius sp. TM1035]
gi|149144845|gb|EDM32874.1| S1 RNA binding domain protein [Roseovarius sp. TM1035]
Length = 775
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 70/130 (53%), Gaps = 1/130 (0%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVHVS+L+D FVKD +V G VKVR+
Sbjct: 645 KDLKPGMLMEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKVRV 704
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
E + RI L+MR+ D + + KDA + ++ + +++ + E + T+
Sbjct: 705 TEVDVARKRIGLSMRK-DGAAPETRAKDAPVAARTAKSGKPASAPVRPPKSEPQATQGAL 763
Query: 263 GQDLEGTVKN 272
G L ++
Sbjct: 764 GDALRAALRG 773
>gi|372489173|ref|YP_005028738.1| transcriptional accessory protein [Dechlorosoma suillum PS]
gi|359355726|gb|AEV26897.1| transcriptional accessory protein [Dechlorosoma suillum PS]
Length = 771
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 48/81 (59%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVHVS LS FVKD +V G VKV+++
Sbjct: 652 DLQPGMILEGVVTNVAAFGAFVDIGVHQDGLVHVSALSTKFVKDPHEVVKAGDIVKVKVL 711
Query: 204 EANAETGRISLTMRESDDISK 224
E + RI+LTMR D K
Sbjct: 712 EVDMARKRIALTMRLDDAFGK 732
>gi|261313042|ref|ZP_05952239.1| RNA-binding S1 domain-containing protein [Brucella pinnipedialis
M163/99/10]
gi|261302068|gb|EEY05565.1| RNA-binding S1 domain-containing protein [Brucella pinnipedialis
M163/99/10]
Length = 441
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVHVS+L+D FV+D +V G VKVR+
Sbjct: 319 KDLKPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRV 378
Query: 203 IEANAETGRISLTMRE 218
E + RI LTMR+
Sbjct: 379 TEVDVPRKRIGLTMRK 394
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT F G D LEGTV N+ GAF+ + +
Sbjct: 288 VRDIIAELDKPGRDPRPEFKTATFADGIDDIKDLKPGMMLEGTVTNVAAFGAFVDIGVHQ 347
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRV--LRISRGQVTLTMKKE 334
+G + S+ +D + ++ G V VRV + + R ++ LTM+K+
Sbjct: 348 DGLVHVSQLADRFVRDPH--EVVKAGDVVKVRVTEVDVPRKRIGLTMRKD 395
>gi|260910080|ref|ZP_05916761.1| YhgF like protein [Prevotella sp. oral taxon 472 str. F0295]
gi|260635792|gb|EEX53801.1| YhgF like protein [Prevotella sp. oral taxon 472 str. F0295]
Length = 711
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V +I FGAF+D G DGLVHVS+L++ +V D +V + Q V+V+++
Sbjct: 636 DLVPGMLLPGIVTNITKFGAFVDVGVHQDGLVHVSQLANRYVADPAEVVKLHQHVQVKVV 695
Query: 204 EANAETGRISLTMR 217
E + RISLTM+
Sbjct: 696 EVDTRRNRISLTMK 709
>gi|188589637|ref|YP_001919919.1| protein tex [Clostridium botulinum E3 str. Alaska E43]
gi|188499918|gb|ACD53054.1| protein tex [Clostridium botulinum E3 str. Alaska E43]
Length = 725
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 58/95 (61%), Gaps = 7/95 (7%)
Query: 134 KSEMPP-------VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVK 186
+ EMP ++ +DL PG G VR++ FGAF+D G DGLVH S++++ FVK
Sbjct: 627 RDEMPAPILKTGIIELKDLKPGMVLNGTVRNVSDFGAFVDIGVHQDGLVHKSQMANRFVK 686
Query: 187 DVGSIVSVGQEVKVRLIEANAETGRISLTMRESDD 221
IV VG VKV ++E + + RISL+M++ D+
Sbjct: 687 HPLDIVKVGDIVKVSILEVDQKRKRISLSMKDVDE 721
>gi|429767401|ref|ZP_19299600.1| Tex-like protein [Clostridium celatum DSM 1785]
gi|429181009|gb|EKY22204.1| Tex-like protein [Clostridium celatum DSM 1785]
Length = 720
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 51/76 (67%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G VR++ FGAF+D G DGLVH S++++ FVK IV VG +KV++
Sbjct: 643 KDLTPGMVLLGTVRNVSDFGAFVDIGVHQDGLVHKSQMANKFVKHPLDIVKVGDVIKVKI 702
Query: 203 IEANAETGRISLTMRE 218
+E + + RISLTM++
Sbjct: 703 MEVDEKRKRISLTMKD 718
>gi|440759759|ref|ZP_20938886.1| Transcription accessory protein (S1 RNA-binding) [Pantoea
agglomerans 299R]
gi|436426504|gb|ELP24214.1| Transcription accessory protein (S1 RNA-binding) [Pantoea
agglomerans 299R]
Length = 775
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LSD FV+D +V G VKV+++
Sbjct: 646 DLTPGLILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHQVVKAGDIVKVKVM 705
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 706 EVDLQRKRIALTMR 719
>gi|423204886|ref|ZP_17191442.1| protein yhgF [Aeromonas veronii AMC34]
gi|404625762|gb|EKB22577.1| protein yhgF [Aeromonas veronii AMC34]
Length = 769
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+P G V ++ FGAF+D G DGLVH+S L+D FVKD +V G V+V+++
Sbjct: 644 DLVPEMVLEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDRFVKDPREVVKAGDIVRVKVL 703
Query: 204 EANAETGRISLTMR 217
E +A RISLTMR
Sbjct: 704 EVDAPRKRISLTMR 717
>gi|390456991|ref|ZP_10242519.1| hypothetical protein PpeoK3_23473 [Paenibacillus peoriae KCTC 3763]
Length = 740
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 75/138 (54%), Gaps = 12/138 (8%)
Query: 92 AADDDSAGASDIPSDVETSESSSIKSEAS-PTLAESRRS--RTAR--KSEMP-PV----- 140
+A D A+ +V + E ++K E PTL + S R R + E+P PV
Sbjct: 594 SAHDLGTKAAAQALNVSSIERLAVKLEVGVPTLRDILESLQRPGRDPRDELPLPVFRKDV 653
Query: 141 -KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
K EDL PG G VR++ FGAF+D G +DGLVH+S+L FVK +VSVG V
Sbjct: 654 LKIEDLAPGMELQGTVRNVIDFGAFVDIGIKSDGLVHISQLRSGFVKHPMDVVSVGDNVT 713
Query: 200 VRLIEANAETGRISLTMR 217
V ++ + + GR+ LTM+
Sbjct: 714 VWVLNVDLKKGRVGLTMK 731
Score = 42.4 bits (98), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R P ++D +K G +L+GTV+N+ GAF+ + +G + S+
Sbjct: 638 RDPRDELPLPVFRKDVLKIEDLAPGMELQGTVRNVIDFGAFVDIGIKSDGLVHISQLRSG 697
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMK 332
+ M + VG V+V VL + +G+V LTMK
Sbjct: 698 FVKHPM--DVVSVGDNVTVWVLNVDLKKGRVGLTMK 731
>gi|291517976|emb|CBK73197.1| Transcriptional accessory protein [Butyrivibrio fibrisolvens 16/4]
Length = 719
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 50/75 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G VR++ FGAFID G DGLVH+S+++D ++K +VSVG V V +
Sbjct: 638 KDLKPGMQLKGTVRNVIDFGAFIDIGVHQDGLVHISQMTDRYIKHPLEVVSVGDIVDVEV 697
Query: 203 IEANAETGRISLTMR 217
I + + GRI+LTM+
Sbjct: 698 ISVDEKKGRIALTMK 712
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP K D ++ G L+GTV+N+ GAFI + ++G + S+ +D
Sbjct: 619 RDPREDMPKPILKSDVLEMKDLKPGMQLKGTVRNVIDFGAFIDIGVHQDGLVHISQMTDR 678
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMK 332
+ + + VG V V V+ + +G++ LTMK
Sbjct: 679 YIKHPL--EVVSVGDIVDVEVISVDEKKGRIALTMK 712
>gi|381403112|ref|ZP_09927796.1| putative transcriptional accessory protein [Pantoea sp. Sc1]
gi|380736311|gb|EIB97374.1| putative transcriptional accessory protein [Pantoea sp. Sc1]
Length = 775
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LSD FV+D +V G VKV+++
Sbjct: 646 DLTPGLILEGSVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHQVVKAGDIVKVKVM 705
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 706 EVDLQRKRIALTMR 719
Score = 38.9 bits (89), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 15/105 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT +F +G + LEG+V N+T GAF+ + ++G + S
Sbjct: 623 KPGRDPRPEFKTAQFAEGVETLSDLTPGLILEGSVTNVTNFGAFVDIGVHQDGLVHISSL 682
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDDVG 338
SD + ++ G V V+V+ + R ++ LTM+ ++ G
Sbjct: 683 SDRFVED--PHQVVKAGDIVKVKVMEVDLQRKRIALTMRLDEQPG 725
>gi|376270886|ref|YP_005113931.1| RNA-binding S1 domain-containing protein [Brucella abortus A13334]
gi|423168843|ref|ZP_17155545.1| hypothetical protein M17_02532 [Brucella abortus bv. 1 str. NI435a]
gi|423171724|ref|ZP_17158398.1| hypothetical protein M19_02256 [Brucella abortus bv. 1 str. NI474]
gi|423174546|ref|ZP_17161216.1| hypothetical protein M1A_01943 [Brucella abortus bv. 1 str. NI486]
gi|423176423|ref|ZP_17163089.1| hypothetical protein M1E_00685 [Brucella abortus bv. 1 str. NI488]
gi|423181153|ref|ZP_17167793.1| hypothetical protein M1G_02252 [Brucella abortus bv. 1 str. NI010]
gi|423184286|ref|ZP_17170922.1| hypothetical protein M1I_02254 [Brucella abortus bv. 1 str. NI016]
gi|423187435|ref|ZP_17174048.1| hypothetical protein M1K_02252 [Brucella abortus bv. 1 str. NI021]
gi|423189857|ref|ZP_17176466.1| hypothetical protein M1M_01538 [Brucella abortus bv. 1 str. NI259]
gi|363402058|gb|AEW19027.1| RNA-binding S1 domain-containing protein [Brucella abortus A13334]
gi|374536146|gb|EHR07666.1| hypothetical protein M19_02256 [Brucella abortus bv. 1 str. NI474]
gi|374538049|gb|EHR09559.1| hypothetical protein M17_02532 [Brucella abortus bv. 1 str. NI435a]
gi|374539115|gb|EHR10621.1| hypothetical protein M1A_01943 [Brucella abortus bv. 1 str. NI486]
gi|374545743|gb|EHR17203.1| hypothetical protein M1G_02252 [Brucella abortus bv. 1 str. NI010]
gi|374546586|gb|EHR18045.1| hypothetical protein M1I_02254 [Brucella abortus bv. 1 str. NI016]
gi|374555025|gb|EHR26435.1| hypothetical protein M1E_00685 [Brucella abortus bv. 1 str. NI488]
gi|374555239|gb|EHR26648.1| hypothetical protein M1K_02252 [Brucella abortus bv. 1 str. NI021]
gi|374555897|gb|EHR27302.1| hypothetical protein M1M_01538 [Brucella abortus bv. 1 str. NI259]
Length = 215
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVHVS+L+D FV+D +V G VKVR+
Sbjct: 93 KDLKPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVRDPHEVVKAGDVVKVRV 152
Query: 203 IEANAETGRISLTMRE 218
E + RI LTMR+
Sbjct: 153 TEVDVPRKRIGLTMRK 168
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 238 VRTTRRSTSKPGQ-KRDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT F G D LEGTV N+ GAF+ + +
Sbjct: 62 VRDIIAELDKPGRDPRPEFKTATFADGIDDIKDLKPGMMLEGTVTNVAAFGAFVDIGVHQ 121
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRV--LRISRGQVTLTMKKE 334
+G + S+ +D + ++ G V VRV + + R ++ LTM+K+
Sbjct: 122 DGLVHVSQLADRFVRDPH--EVVKAGDVVKVRVTEVDVPRKRIGLTMRKD 169
>gi|239906693|ref|YP_002953434.1| transcription accessory protein [Desulfovibrio magneticus RS-1]
gi|239796559|dbj|BAH75548.1| transcription accessory protein [Desulfovibrio magneticus RS-1]
Length = 713
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G+V ++ FGAF+D G DGLVHVS L+D +V D +V+ GQEV V ++
Sbjct: 632 DLRPGMRLPGRVTNVTAFGAFVDVGVHRDGLVHVSHLADAYVVDPAKVVAAGQEVMVTVL 691
Query: 204 EANAETGRISLTMR 217
+ E GR+SL+M+
Sbjct: 692 AIDKERGRLSLSMK 705
>gi|138893885|ref|YP_001124338.1| S1 RNA-binding domain-containing protein [Geobacillus
thermodenitrificans NG80-2]
gi|134265398|gb|ABO65593.1| S1 RNA binding domain protein [Geobacillus thermodenitrificans
NG80-2]
Length = 721
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 49/77 (63%)
Query: 140 VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
+K EDL PG G VR++ FGAF+D G DGLVH+S+LS +V+ IVSVG VK
Sbjct: 640 LKMEDLKPGMELEGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQYVRHPLDIVSVGDVVK 699
Query: 200 VRLIEANAETGRISLTM 216
V + + GRISL+M
Sbjct: 700 VWVEHVDVAKGRISLSM 716
Score = 42.4 bits (98), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP ++D +K G +LEGTV+N+ GAF+ + ++G + S+ S
Sbjct: 624 RDPRDELPKPLLRKDVLKMEDLKPGMELEGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQ 683
Query: 299 GFANMMGGSSLQVGQEVSVRV--LRISRGQVTLTM 331
+ + S VG V V V + +++G+++L+M
Sbjct: 684 YVRHPLDIVS--VGDVVKVWVEHVDVAKGRISLSM 716
>gi|330827877|ref|YP_004390829.1| paral putative RNase R [Aeromonas veronii B565]
gi|328803013|gb|AEB48212.1| Paral putative RNase R [Aeromonas veronii B565]
Length = 785
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+P G V ++ FGAF+D G DGLVH+S L+D FVKD +V G V+V+++
Sbjct: 660 DLVPEMVLEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDRFVKDPREVVKAGDIVRVKVL 719
Query: 204 EANAETGRISLTMR 217
E +A RISLTMR
Sbjct: 720 EVDAPRKRISLTMR 733
>gi|395228785|ref|ZP_10407103.1| protein YhgF [Citrobacter sp. A1]
gi|421845055|ref|ZP_16278211.1| transcriptional accessory protein [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|424732537|ref|ZP_18161115.1| transcription elongation factor [Citrobacter sp. L17]
gi|394717491|gb|EJF23175.1| protein YhgF [Citrobacter sp. A1]
gi|411773918|gb|EKS57446.1| transcriptional accessory protein [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|422893196|gb|EKU33045.1| transcription elongation factor [Citrobacter sp. L17]
Length = 777
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS+ FV D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVDDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|229845697|ref|ZP_04465820.1| DNA gyrase subunit B [Haemophilus influenzae 6P18H1]
gi|229811383|gb|EEP47089.1| DNA gyrase subunit B [Haemophilus influenzae 6P18H1]
Length = 770
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 56/100 (56%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LSD FV+D +V G VKV+++
Sbjct: 647 DLKPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGNIVKVKVL 706
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRR 243
E + RI+LTMR + K + D T S T+R
Sbjct: 707 EVDVSRKRIALTMRLDESAVKNDGKSDRTLSARPRGNTQR 746
Score = 42.0 bits (97), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 15/107 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT F +G + LEGTV N+T GAF+ + ++G + S
Sbjct: 624 KPGRDPRGEFKTAVFAEGVEEITDLKPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSL 683
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKEDDVGSN 340
SD + ++ G V V+VL +SR ++ LTM+ ++ N
Sbjct: 684 SDKFVED--PHQVVKTGNIVKVKVLEVDVSRKRIALTMRLDESAVKN 728
>gi|62182006|ref|YP_218423.1| RNase R [Salmonella enterica subsp. enterica serovar Choleraesuis
str. SC-B67]
gi|375116348|ref|ZP_09761518.1| putative transcription accessory protein [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SCSA50]
gi|62129639|gb|AAX67342.1| paral putative RNase R [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|322716494|gb|EFZ08065.1| putative transcription accessory protein [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SCSA50]
Length = 776
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS+ FV D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVDDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|423211451|ref|ZP_17197984.1| competence protein ComEA helix-hairpin-helix repeat region
[Aeromonas veronii AER397]
gi|404613531|gb|EKB10552.1| competence protein ComEA helix-hairpin-helix repeat region
[Aeromonas veronii AER397]
Length = 769
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+P G V ++ FGAF+D G DGLVH+S L+D FVKD +V G V+V+++
Sbjct: 644 DLVPEMVLEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDRFVKDPREVVKAGDIVRVKVL 703
Query: 204 EANAETGRISLTMR 217
E +A RISLTMR
Sbjct: 704 EVDAPRKRISLTMR 717
>gi|224585298|ref|YP_002639097.1| transcription accessory protein [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|224469826|gb|ACN47656.1| putative transcription accessory protein [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
Length = 776
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS+ FV D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVDDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|205354872|ref|YP_002228673.1| transcription accessory protein [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205274653|emb|CAR39707.1| putative transcription accessory protein [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
Length = 775
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS+ FV D ++V G VKV+++
Sbjct: 646 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVDDPHTVVKAGDIVKVKVL 705
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 706 EVDLQRKRIALTMR 719
>gi|161616544|ref|YP_001590509.1| hypothetical protein SPAB_04360 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|168232641|ref|ZP_02657699.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|194470413|ref|ZP_03076397.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|198242502|ref|YP_002217463.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|375120977|ref|ZP_09766144.1| Protein yhgF [Salmonella enterica subsp. enterica serovar Dublin
str. SD3246]
gi|378957648|ref|YP_005215135.1| putative transcription accessory protein [Salmonella enterica
subsp. enterica serovar Gallinarum/pullorum str.
RKS5078]
gi|418791146|ref|ZP_13346914.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19447]
gi|418795563|ref|ZP_13351268.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19449]
gi|418798809|ref|ZP_13354483.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19567]
gi|421357086|ref|ZP_15807398.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|421361894|ref|ZP_15812150.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 639016-6]
gi|421368420|ref|ZP_15818609.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 640631]
gi|421372090|ref|ZP_15822240.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 77-0424]
gi|421376444|ref|ZP_15826544.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|421380056|ref|ZP_15830120.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
gi|421387021|ref|ZP_15837026.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|421389008|ref|ZP_15838993.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|421393408|ref|ZP_15843353.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|421397480|ref|ZP_15847396.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|421404524|ref|ZP_15854364.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|421408182|ref|ZP_15857982.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|421414190|ref|ZP_15863935.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 77-1427]
gi|421415670|ref|ZP_15865394.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|421423311|ref|ZP_15872970.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|421427842|ref|ZP_15877461.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|421429619|ref|ZP_15879214.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|421437471|ref|ZP_15886987.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|421438710|ref|ZP_15888205.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 6-18]
gi|421443347|ref|ZP_15892788.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|421448334|ref|ZP_15897727.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|436640460|ref|ZP_20516304.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 22704]
gi|436802524|ref|ZP_20525429.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CHS44]
gi|436809850|ref|ZP_20529092.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1882]
gi|436816595|ref|ZP_20533973.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|436831861|ref|ZP_20536356.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1594]
gi|436849533|ref|ZP_20540689.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1566]
gi|436859064|ref|ZP_20547341.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1580]
gi|436862785|ref|ZP_20549361.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1543]
gi|436874057|ref|ZP_20556718.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1441]
gi|436876553|ref|ZP_20557886.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|436886426|ref|ZP_20562855.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1558]
gi|436893390|ref|ZP_20567369.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1018]
gi|436900673|ref|ZP_20571603.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1010]
gi|436913802|ref|ZP_20579004.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|436919022|ref|ZP_20581875.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0895]
gi|436928119|ref|ZP_20587564.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0899]
gi|436936980|ref|ZP_20592275.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1457]
gi|436944264|ref|ZP_20596875.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|436953279|ref|ZP_20601629.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0968]
gi|436963112|ref|ZP_20605735.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1444]
gi|436968729|ref|ZP_20607951.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1445]
gi|436978751|ref|ZP_20612726.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1559]
gi|436995716|ref|ZP_20619416.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1565]
gi|437008590|ref|ZP_20623433.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|437021838|ref|ZP_20628082.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|437032816|ref|ZP_20632159.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0956]
gi|437041357|ref|ZP_20635373.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1455]
gi|437047050|ref|ZP_20638641.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1575]
gi|437056441|ref|ZP_20643849.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|437067723|ref|ZP_20650573.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|437073429|ref|ZP_20653002.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|437080222|ref|ZP_20656958.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|437087837|ref|ZP_20661322.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|437103747|ref|ZP_20666785.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|437124417|ref|ZP_20673449.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607308-16]
gi|437131669|ref|ZP_20677502.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607308-19]
gi|437136617|ref|ZP_20679854.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|437143713|ref|ZP_20684511.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|437154423|ref|ZP_20691161.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
gi|437162429|ref|ZP_20696036.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. SE15-1]
gi|437166707|ref|ZP_20698161.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|437178186|ref|ZP_20704532.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|437183232|ref|ZP_20707591.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|437263057|ref|ZP_20719387.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|437271592|ref|ZP_20723856.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|437275656|ref|ZP_20726001.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|437291327|ref|ZP_20731391.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_69-4941]
gi|437304027|ref|ZP_20733740.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|437324479|ref|ZP_20739737.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|437339320|ref|ZP_20743973.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|437350514|ref|ZP_20747345.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22558]
gi|437430801|ref|ZP_20756004.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|437441775|ref|ZP_20757513.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 40-18]
gi|437464684|ref|ZP_20763761.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|437474620|ref|ZP_20766412.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|437490874|ref|ZP_20771197.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|437517940|ref|ZP_20778345.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|437537312|ref|ZP_20781706.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
gi|437563322|ref|ZP_20786629.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648900 1-16]
gi|437572681|ref|ZP_20789105.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 1-17]
gi|437590514|ref|ZP_20794428.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 39-2]
gi|437607420|ref|ZP_20800335.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648902 6-8]
gi|437622337|ref|ZP_20804608.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648903 1-6]
gi|437652593|ref|ZP_20810111.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648904 3-6]
gi|437661104|ref|ZP_20812714.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 653049 13-19]
gi|437666952|ref|ZP_20814941.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 8-1]
gi|437692141|ref|ZP_20821069.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|437706993|ref|ZP_20825449.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|437723947|ref|ZP_20829441.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 16-16]
gi|437776430|ref|ZP_20836093.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|437813886|ref|ZP_20842008.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 33944]
gi|437920943|ref|ZP_20850738.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 6.0562-1]
gi|438078654|ref|ZP_20857480.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-5646]
gi|438086719|ref|ZP_20859017.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|438102551|ref|ZP_20864972.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|438113321|ref|ZP_20869496.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|445147580|ref|ZP_21388262.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Dublin str. SL1438]
gi|445148946|ref|ZP_21388771.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Dublin str. HWS51]
gi|445166849|ref|ZP_21394220.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. SE8a]
gi|445209789|ref|ZP_21401623.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 20037]
gi|445234273|ref|ZP_21406659.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. SE10]
gi|445345668|ref|ZP_21418270.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 13-1]
gi|161365908|gb|ABX69676.1| hypothetical protein SPAB_04360 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194456777|gb|EDX45616.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|197937018|gb|ACH74351.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|205333149|gb|EDZ19913.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|326625244|gb|EGE31589.1| Protein yhgF [Salmonella enterica subsp. enterica serovar Dublin
str. SD3246]
gi|357208259|gb|AET56305.1| putative transcription accessory protein [Salmonella enterica
subsp. enterica serovar Gallinarum/pullorum str.
RKS5078]
gi|392756431|gb|EJA13328.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19447]
gi|392758947|gb|EJA15812.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19449]
gi|392766287|gb|EJA23069.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19567]
gi|395984660|gb|EJH93838.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 640631]
gi|395991727|gb|EJI00849.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 639016-6]
gi|395991942|gb|EJI01063.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|396001039|gb|EJI10052.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 77-0424]
gi|396001808|gb|EJI10819.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|396005121|gb|EJI14101.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
gi|396010161|gb|EJI19074.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|396018144|gb|EJI27007.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|396019052|gb|EJI27912.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|396025457|gb|EJI34233.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|396028690|gb|EJI37449.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|396033990|gb|EJI42694.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|396036796|gb|EJI45451.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 77-1427]
gi|396037400|gb|EJI46049.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|396046921|gb|EJI55499.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|396049609|gb|EJI58147.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|396051099|gb|EJI59618.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|396057998|gb|EJI66466.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|396070029|gb|EJI78358.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|396072517|gb|EJI80827.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 6-18]
gi|396072988|gb|EJI81294.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|434956321|gb|ELL50062.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 22704]
gi|434957296|gb|ELL50949.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CHS44]
gi|434965910|gb|ELL58808.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1882]
gi|434972392|gb|ELL64858.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|434981712|gb|ELL73574.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1594]
gi|434988159|gb|ELL79760.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1580]
gi|434988906|gb|ELL80490.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1566]
gi|434997344|gb|ELL88585.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1441]
gi|434998040|gb|ELL89262.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1543]
gi|435010639|gb|ELM01402.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|435012182|gb|ELM02872.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1558]
gi|435019041|gb|ELM09486.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1018]
gi|435021894|gb|ELM12245.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1010]
gi|435023602|gb|ELM13842.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|435030080|gb|ELM20121.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0895]
gi|435034680|gb|ELM24537.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0899]
gi|435036255|gb|ELM26076.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1457]
gi|435040893|gb|ELM30646.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|435047960|gb|ELM37527.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0968]
gi|435049267|gb|ELM38802.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1444]
gi|435059469|gb|ELM48746.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1445]
gi|435062551|gb|ELM51732.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1565]
gi|435067831|gb|ELM56861.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|435068946|gb|ELM57955.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1559]
gi|435077570|gb|ELM66316.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|435078440|gb|ELM67171.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0956]
gi|435086564|gb|ELM75102.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1455]
gi|435095953|gb|ELM84236.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|435097115|gb|ELM85376.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|435101516|gb|ELM89662.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1575]
gi|435108215|gb|ELM96182.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|435114015|gb|ELN01835.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|435117571|gb|ELN05274.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|435120336|gb|ELN07931.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607308-16]
gi|435121782|gb|ELN09305.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|435123569|gb|ELN11061.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607308-19]
gi|435135858|gb|ELN22959.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|435139434|gb|ELN26425.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|435139936|gb|ELN26917.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
gi|435142910|gb|ELN29789.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. SE15-1]
gi|435152517|gb|ELN39146.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|435153976|gb|ELN40573.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|435161632|gb|ELN47860.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|435163163|gb|ELN49301.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|435170066|gb|ELN55824.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|435174915|gb|ELN60356.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|435181521|gb|ELN66574.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_69-4941]
gi|435188153|gb|ELN72870.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|435194308|gb|ELN78766.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|435195592|gb|ELN79982.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|435199209|gb|ELN83329.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|435211839|gb|ELN94916.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 40-18]
gi|435214360|gb|ELN97167.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22558]
gi|435217255|gb|ELN99697.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|435224389|gb|ELO06361.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|435227925|gb|ELO09376.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|435230026|gb|ELO11361.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|435236887|gb|ELO17601.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648900 1-16]
gi|435239961|gb|ELO20391.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
gi|435247045|gb|ELO27016.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 1-17]
gi|435254112|gb|ELO33527.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648902 6-8]
gi|435255229|gb|ELO34599.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 39-2]
gi|435255848|gb|ELO35202.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648903 1-6]
gi|435265942|gb|ELO44738.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648904 3-6]
gi|435268547|gb|ELO47127.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 653049 13-19]
gi|435280242|gb|ELO57968.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|435284061|gb|ELO61565.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 8-1]
gi|435291383|gb|ELO68203.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|435293408|gb|ELO70104.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 16-16]
gi|435295814|gb|ELO72237.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 33944]
gi|435304390|gb|ELO80164.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|435309516|gb|ELO84203.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-5646]
gi|435313633|gb|ELO87249.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 6.0562-1]
gi|435318462|gb|ELO91386.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|435323558|gb|ELO95555.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|435329449|gb|ELP00851.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|444844605|gb|ELX69844.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Dublin str. SL1438]
gi|444858241|gb|ELX83227.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Dublin str. HWS51]
gi|444859946|gb|ELX84878.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 20037]
gi|444860773|gb|ELX85679.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. SE10]
gi|444865916|gb|ELX90673.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. SE8a]
gi|444878602|gb|ELY02716.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 13-1]
Length = 776
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS+ FV D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVDDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|88861076|ref|ZP_01135711.1| conserved protein with nucleic acid-binding protein-like domain
(Transcriptional accessory protein) [Pseudoalteromonas
tunicata D2]
gi|88817004|gb|EAR26824.1| conserved protein with nucleic acid-binding protein-like domain
(Transcriptional accessory protein) [Pseudoalteromonas
tunicata D2]
Length = 772
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAF+D G DGLVH+S +++ F+ D +V G VKV
Sbjct: 642 KVSDLKPGMILEGVVSNVANFGAFVDVGVHQDGLVHISAITNKFISDPREVVKAGDIVKV 701
Query: 201 RLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTK 259
+++E +A RIS TMR +D+I + D TT+R +P Q K K
Sbjct: 702 KVVEVDAARNRISFTMRLNDEIQH--------TTADSSNTTKR--HQPKQVAQHAKVKK 750
>gi|420367880|ref|ZP_14868656.1| protein yhgF [Shigella flexneri 1235-66]
gi|391322835|gb|EIQ79507.1| protein yhgF [Shigella flexneri 1235-66]
Length = 777
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS+ FV D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVDDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|375125768|ref|ZP_09770932.1| putative transcription accessory protein [Salmonella enterica
subsp. enterica serovar Gallinarum str. SG9]
gi|445131627|ref|ZP_21381826.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9184]
gi|326630018|gb|EGE36361.1| putative transcription accessory protein [Salmonella enterica
subsp. enterica serovar Gallinarum str. SG9]
gi|444850024|gb|ELX75130.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9184]
Length = 776
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS+ FV D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVDDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|167549292|ref|ZP_02343051.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
gi|194442760|ref|YP_002042755.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|418806704|ref|ZP_13362274.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21550]
gi|418810867|ref|ZP_13366404.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 22513]
gi|418817580|ref|ZP_13373065.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21538]
gi|418819799|ref|ZP_13375236.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 22425]
gi|418832336|ref|ZP_13387277.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM N18486]
gi|418834524|ref|ZP_13389432.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM N1543]
gi|418839989|ref|ZP_13394820.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21554]
gi|418852023|ref|ZP_13406729.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 37978]
gi|418853038|ref|ZP_13407733.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19593]
gi|194401423|gb|ACF61645.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|205325750|gb|EDZ13589.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
gi|392780553|gb|EJA37205.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 22513]
gi|392781862|gb|EJA38500.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21550]
gi|392787573|gb|EJA44112.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21538]
gi|392793724|gb|EJA50159.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 22425]
gi|392797485|gb|EJA53791.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM N18486]
gi|392805467|gb|EJA61598.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM N1543]
gi|392811779|gb|EJA67779.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21554]
gi|392816230|gb|EJA72160.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 37978]
gi|392827585|gb|EJA83287.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19593]
Length = 776
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS+ FV D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVDDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|455640945|gb|EMF20148.1| transcriptional accessory protein [Citrobacter freundii GTC 09479]
Length = 777
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS+ FV D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVDDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|407694341|ref|YP_006819129.1| transcriptional accessory factor [Alcanivorax dieselolei B5]
gi|407251679|gb|AFT68786.1| Transcriptional accessory factor [Alcanivorax dieselolei B5]
Length = 778
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 49/77 (63%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVHVS L+D FV+D +V+ G VKV+++
Sbjct: 647 DLKPGMILEGAVTNVTNFGAFVDIGVHQDGLVHVSALADKFVEDPHDVVNPGDIVKVKVL 706
Query: 204 EANAETGRISLTMRESD 220
E + RISLTMR D
Sbjct: 707 EVDQARKRISLTMRMDD 723
>gi|291562544|emb|CBL41360.1| polyribonucleotide nucleotidyltransferase [butyrate-producing
bacterium SS3/4]
Length = 739
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 56/87 (64%), Gaps = 4/87 (4%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
D+ PG +TGKV I FGAF++ DG+VH+S+LSD V V +V++G EV VR++
Sbjct: 619 DVEPGMIYTGKVVRIMEFGAFVELAPNKDGMVHISKLSDKRVAKVEDVVNIGDEVTVRVV 678
Query: 204 EANAETGRISLTMRESD---DISKLQQ 227
E + GRI+LTMR D D+ KL +
Sbjct: 679 EVD-RMGRINLTMRPEDMTADLEKLTR 704
Score = 42.7 bits (99), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G G V + GAF+ L ++G + S+ SD A + + +G EV+VRV+ +
Sbjct: 623 GMIYTGKVVRIMEFGAFVELAPNKDGMVHISKLSDKRVAKV--EDVVNIGDEVTVRVVEV 680
Query: 323 SR-GQVTLTMKKEDDVGSNLQLTQ 345
R G++ LTM+ ED +LT+
Sbjct: 681 DRMGRINLTMRPEDMTADLEKLTR 704
>gi|288930029|ref|ZP_06423870.1| S1 RNA binding domain protein [Prevotella sp. oral taxon 317 str.
F0108]
gi|288328688|gb|EFC67278.1| S1 RNA binding domain protein [Prevotella sp. oral taxon 317 str.
F0108]
Length = 726
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V +I FGAF+D G DGLVHVS+L++ +V D +V + Q V+V+++
Sbjct: 651 DLVPGMLLPGIVTNITKFGAFVDVGVHQDGLVHVSQLANRYVADPAEVVKLHQHVQVKVV 710
Query: 204 EANAETGRISLTMR 217
E + RISLTM+
Sbjct: 711 EVDTRRNRISLTMK 724
>gi|207858744|ref|YP_002245395.1| transcription accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|206710547|emb|CAR34905.1| putative transcription accessory protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
Length = 775
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS+ FV D ++V G VKV+++
Sbjct: 646 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVDDPHTVVKAGDIVKVKVL 705
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 706 EVDLQRKRIALTMR 719
>gi|423203677|ref|ZP_17190245.1| protein yhgF [Aeromonas veronii AER39]
gi|404612455|gb|EKB09516.1| protein yhgF [Aeromonas veronii AER39]
Length = 769
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+P G V ++ FGAF+D G DGLVH+S L+D FVKD +V G V+V+++
Sbjct: 644 DLVPEMVLEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDRFVKDPREVVKAGDIVRVKVL 703
Query: 204 EANAETGRISLTMR 217
E +A RISLTMR
Sbjct: 704 EVDAPRKRISLTMR 717
>gi|386333369|ref|YP_006029538.1| transcriptional accessory protein [Ralstonia solanacearum Po82]
gi|334195819|gb|AEG69004.1| transcriptional accessory protein [Ralstonia solanacearum Po82]
Length = 780
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 49/77 (63%)
Query: 145 LIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIE 204
L PG G V ++ FGAFID G DGLVHVS LS FV+D +V GQ VKV+++E
Sbjct: 661 LQPGMVLEGVVTNVAAFGAFIDIGVHQDGLVHVSALSTKFVRDPHEVVKPGQIVKVKVME 720
Query: 205 ANAETGRISLTMRESDD 221
+ + RI LTMR +D+
Sbjct: 721 VDVKRNRIGLTMRLTDE 737
>gi|148378180|ref|YP_001252721.1| RNA-binding protein [Clostridium botulinum A str. ATCC 3502]
gi|153931281|ref|YP_001382580.1| RNA-binding protein [Clostridium botulinum A str. ATCC 19397]
gi|153934599|ref|YP_001386133.1| RNA-binding protein [Clostridium botulinum A str. Hall]
gi|148287664|emb|CAL81729.1| putative RNA binding protein [Clostridium botulinum A str. ATCC
3502]
gi|152927325|gb|ABS32825.1| RNA-binding protein [Clostridium botulinum A str. ATCC 19397]
gi|152930513|gb|ABS36012.1| RNA-binding protein [Clostridium botulinum A str. Hall]
Length = 718
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 49/74 (66%)
Query: 145 LIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIE 204
L P G VR++ FGAF+D G DGLVH+S+LSD FVK IV VG V+VR++E
Sbjct: 645 LKPDMVLMGTVRNVADFGAFVDIGVHQDGLVHISQLSDRFVKHPLDIVKVGDIVEVRILE 704
Query: 205 ANAETGRISLTMRE 218
+ + RISL+M++
Sbjct: 705 VDKKRNRISLSMKK 718
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP K + T+ L GTV+N+ GAF+ + ++G + S+ SD
Sbjct: 624 RDPREDLPKPILKTGIVDITQLKPDMVLMGTVRNVADFGAFVDIGVHQDGLVHISQLSDR 683
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKK 333
+ + ++VG V VR+L + R +++L+MKK
Sbjct: 684 FVKHPL--DIVKVGDIVEVRILEVDKKRNRISLSMKK 718
>gi|145633476|ref|ZP_01789205.1| transcription elongation factor GreB [Haemophilus influenzae 3655]
gi|144985845|gb|EDJ92453.1| transcription elongation factor GreB [Haemophilus influenzae 3655]
Length = 770
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 53/92 (57%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LSD FV+D +V G VKV+++
Sbjct: 647 DLKPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGNIVKVKVL 706
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASG 235
E + RI+LTMR + K + D T S
Sbjct: 707 EVDVPRKRIALTMRLDESAVKNDSKSDRTLSA 738
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 15/107 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT F +G + LEGTV N+T GAF+ + ++G + S
Sbjct: 624 KPGRDPRGEFKTAVFAEGVEEITDLKPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSL 683
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKKEDDVGSN 340
SD + ++ G V V+VL + R ++ LTM+ ++ N
Sbjct: 684 SDKFVED--PHQVVKTGNIVKVKVLEVDVPRKRIALTMRLDESAVKN 728
>gi|295107401|emb|CBL04944.1| Transcriptional accessory protein [Gordonibacter pamelaeae
7-10-1-b]
Length = 718
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 50/74 (67%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL+PG TG VR++ FGAF+D G DGLVHVS+L+D FV+ +V+VG V V +
Sbjct: 640 DDLVPGMELTGTVRNVVDFGAFVDIGVKQDGLVHVSKLADRFVRHPSEVVAVGDTVTVWV 699
Query: 203 IEANAETGRISLTM 216
+ + G+ISL+M
Sbjct: 700 TAVDKDRGKISLSM 713
>gi|394990651|ref|ZP_10383482.1| hypothetical protein SCD_03079 [Sulfuricella denitrificans skB26]
gi|393790133|dbj|GAB73121.1| hypothetical protein SCD_03079 [Sulfuricella denitrificans skB26]
Length = 768
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 52/79 (65%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S L++ FVKD +IV G V+V++
Sbjct: 650 KDLQPGMILEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPHTIVKAGDVVRVKV 709
Query: 203 IEANAETGRISLTMRESDD 221
+E + RI+LTMR SD+
Sbjct: 710 VEIDPVRRRIALTMRLSDE 728
>gi|374334047|ref|YP_005090734.1| paral putative RNase R [Oceanimonas sp. GK1]
gi|372983734|gb|AEX99983.1| paral putative RNase R [Oceanimonas sp. GK1]
Length = 774
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 62/116 (53%), Gaps = 9/116 (7%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL+P G V ++ FGAF+D G DGLVH+S L+D FV+D +V G V+V
Sbjct: 640 KPADLVPDMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALTDRFVQDPREVVKAGDIVRV 699
Query: 201 RLIEANAETGRISLTMRESDDISKLQQQKDATASGDKV--RTTRRSTSKPGQKRDE 254
+++E + + RI+LTMR L Q A G V R R + KP +R +
Sbjct: 700 KVLEVDLQRNRIALTMR-------LDQSAAEHAEGKSVPRRDDRARSGKPAGQRQQ 748
>gi|170756784|ref|YP_001779803.1| RNA-binding protein [Clostridium botulinum B1 str. Okra]
gi|429243948|ref|ZP_19207430.1| RNA-binding protein [Clostridium botulinum CFSAN001628]
gi|169121996|gb|ACA45832.1| RNA-binding protein [Clostridium botulinum B1 str. Okra]
gi|428758868|gb|EKX81259.1| RNA-binding protein [Clostridium botulinum CFSAN001628]
Length = 718
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 50/74 (67%)
Query: 145 LIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIE 204
L P G VR++ FGAF+D G DGLVH+S+LSD+FVK IV VG V+VR++E
Sbjct: 645 LKPDMVLMGTVRNVADFGAFVDIGVHQDGLVHISQLSDSFVKHPLDIVKVGDIVEVRILE 704
Query: 205 ANAETGRISLTMRE 218
+ + RISL+M++
Sbjct: 705 VDKKRNRISLSMKK 718
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP K + T+ L GTV+N+ GAF+ + ++G + S+ SD
Sbjct: 624 RDPREDLPKPILKTGIVDITQLKPDMVLMGTVRNVADFGAFVDIGVHQDGLVHISQLSDS 683
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKK 333
+ + ++VG V VR+L + R +++L+MKK
Sbjct: 684 FVKHPL--DIVKVGDIVEVRILEVDKKRNRISLSMKK 718
>gi|354566248|ref|ZP_08985421.1| Tex-like protein [Fischerella sp. JSC-11]
gi|353546756|gb|EHC16204.1| Tex-like protein [Fischerella sp. JSC-11]
Length = 719
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL G G V ++ FGAF+D G DGLVH+S+L+D FV D IV VGQ VKVR++
Sbjct: 642 DLKVGMELEGIVTNVANFGAFVDIGVHQDGLVHISQLADRFVDDPKKIVKVGQVVKVRVM 701
Query: 204 EANAETGRISLTMR 217
E N + RI L+M+
Sbjct: 702 EVNEKLKRIGLSMK 715
>gi|251779114|ref|ZP_04822034.1| tex domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
gi|243083429|gb|EES49319.1| tex domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
Length = 725
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 58/95 (61%), Gaps = 7/95 (7%)
Query: 134 KSEMPP-------VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVK 186
+ EMP ++ +DL PG G VR++ FGAF+D G DGLVH S++++ FVK
Sbjct: 627 RDEMPTPILKTGIIELKDLKPGMVLNGTVRNVSDFGAFVDIGVHQDGLVHKSQMANRFVK 686
Query: 187 DVGSIVSVGQEVKVRLIEANAETGRISLTMRESDD 221
IV VG VKV ++E + + RISL+M++ D+
Sbjct: 687 HPLDIVKVGDIVKVSILEVDQKRKRISLSMKDVDE 721
>gi|306820494|ref|ZP_07454127.1| YhgF like protein [Eubacterium yurii subsp. margaretiae ATCC 43715]
gi|304551408|gb|EFM39366.1| YhgF like protein [Eubacterium yurii subsp. margaretiae ATCC 43715]
Length = 714
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 52/78 (66%)
Query: 140 VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
+K EDL G G VR++ FGAF+D G DGLVH+S+LSD F+K+ +VS+G V
Sbjct: 635 LKLEDLSEGMILKGTVRNVLEFGAFVDIGVKNDGLVHISQLSDKFIKNPMEVVSIGDIVN 694
Query: 200 VRLIEANAETGRISLTMR 217
V++I + + ++SLTMR
Sbjct: 695 VKVIGIDLDRKKVSLTMR 712
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 248 PGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGS 307
P + D +K +G L+GTV+N+ GAF+ + +G + S+ SD N M
Sbjct: 628 PVLRSDVLKLEDLSEGMILKGTVRNVLEFGAFVDIGVKNDGLVHISQLSDKFIKNPM--E 685
Query: 308 SLQVGQEVSVRVLRI--SRGQVTLTMK 332
+ +G V+V+V+ I R +V+LTM+
Sbjct: 686 VVSIGDIVNVKVIGIDLDRKKVSLTMR 712
>gi|257898342|ref|ZP_05677995.1| RNA binding protein S1 [Enterococcus faecium Com15]
gi|257836254|gb|EEV61328.1| RNA binding protein S1 [Enterococcus faecium Com15]
Length = 726
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 48/74 (64%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG TG VR+ FGAF+D G DGLVH+S+LS FVK +VSVG V V +
Sbjct: 647 EDLKPGMELTGTVRNAIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTVWI 706
Query: 203 IEANAETGRISLTM 216
+ + + GRISLTM
Sbjct: 707 EQVDTKKGRISLTM 720
>gi|153956208|ref|YP_001396973.1| hypothetical protein CKL_3612 [Clostridium kluyveri DSM 555]
gi|219856533|ref|YP_002473655.1| hypothetical protein CKR_3190 [Clostridium kluyveri NBRC 12016]
gi|146349066|gb|EDK35602.1| Tex [Clostridium kluyveri DSM 555]
gi|219570257|dbj|BAH08241.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 717
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 49/73 (67%)
Query: 145 LIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIE 204
L PG T TG VR++ FGAF+D G DGLVH+S+LSD FVK +V VG V V ++E
Sbjct: 645 LKPGMTLTGTVRNVADFGAFVDIGVHQDGLVHISQLSDKFVKHPLDVVKVGDIVNVTVLE 704
Query: 205 ANAETGRISLTMR 217
+ + RI+L+M+
Sbjct: 705 VDEKRKRIALSMK 717
>gi|409204238|ref|ZP_11232432.1| hypothetical protein PflaJ_23009 [Pseudoalteromonas flavipulchra
JG1]
Length = 770
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 52/86 (60%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL G G V ++ FGAF+D G DGLVH+S L+D F+ D +V G VKV++I
Sbjct: 645 DLKVGMILEGVVSNVANFGAFVDVGVHQDGLVHISALTDKFISDPREVVKAGDIVKVKVI 704
Query: 204 EANAETGRISLTMRESDDISKLQQQK 229
E + RIS TMR +D+IS+ QK
Sbjct: 705 EVDVPRKRISFTMRLNDEISQAPAQK 730
>gi|344345309|ref|ZP_08776163.1| Tex-like protein [Marichromatium purpuratum 984]
gi|343803138|gb|EGV21050.1| Tex-like protein [Marichromatium purpuratum 984]
Length = 798
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 50/78 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L+D FVKD ++V G VKV+++
Sbjct: 644 DLKPGMVLEGTVTNVTNFGAFVDIGVHQDGLVHISALADRFVKDPHAVVKSGDLVKVKVL 703
Query: 204 EANAETGRISLTMRESDD 221
E + E RI+LT R D+
Sbjct: 704 EVDLERKRIALTRRLGDE 721
>gi|395234252|ref|ZP_10412480.1| transcriptional accessory protein [Enterobacter sp. Ag1]
gi|394731206|gb|EJF31010.1| transcriptional accessory protein [Enterobacter sp. Ag1]
Length = 778
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 47/74 (63%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LSD F+ D +V G VKV+++
Sbjct: 647 DLTPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDKFIDDPHKVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 15/105 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT +F +G + LEG V N+T GAF+ + ++G + S
Sbjct: 624 KPGRDPRPEFKTAQFAEGVETMNDLTPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSL 683
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDDVG 338
SD + ++ G V V+VL + R ++ LTM+ ++ G
Sbjct: 684 SDKFIDD--PHKVVKAGDIVKVKVLEVDLQRKRIALTMRLDEQPG 726
>gi|326389632|ref|ZP_08211198.1| Tex-like protein [Thermoanaerobacter ethanolicus JW 200]
gi|325994347|gb|EGD52773.1| Tex-like protein [Thermoanaerobacter ethanolicus JW 200]
Length = 712
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
+L PG G VR++ FG F+D G TDGLVH S +S N++K +VSVG VKVR++
Sbjct: 639 ELKPGMELMGTVRNVTDFGCFVDIGVHTDGLVHFSEMSQNYIKHPLDVVSVGDIVKVRVL 698
Query: 204 EANAETGRISLTMR 217
+ E RISL+M+
Sbjct: 699 SVDIERNRISLSMK 712
Score = 46.2 bits (108), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP + D M + G +L GTV+N+T G F+ + +G + SE S +
Sbjct: 619 RDPREDLPKPILRSDVMTINELKPGMELMGTVRNVTDFGCFVDIGVHTDGLVHFSEMSQN 678
Query: 299 GFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMK 332
+ + S VG V VRVL I R +++L+MK
Sbjct: 679 YIKHPLDVVS--VGDIVKVRVLSVDIERNRISLSMK 712
>gi|257887236|ref|ZP_05666889.1| RNA binding protein S1 [Enterococcus faecium 1,141,733]
gi|257823290|gb|EEV50222.1| RNA binding protein S1 [Enterococcus faecium 1,141,733]
Length = 726
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 48/74 (64%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG TG VR++ FGAF+D G DGLVH+S+LS FVK +VSVG V +
Sbjct: 647 EDLKPGMELTGTVRNVIDFGAFVDIGVKQDGLVHISKLSKKFVKHPTDVVSVGDIVTAWI 706
Query: 203 IEANAETGRISLTM 216
+ + + GRISLTM
Sbjct: 707 EQVDTKKGRISLTM 720
>gi|417368745|ref|ZP_12140186.1| Transcription accessory protein, partial [Salmonella enterica
subsp. enterica serovar Hvittingfoss str. A4-620]
gi|353585853|gb|EHC45575.1| Transcription accessory protein, partial [Salmonella enterica
subsp. enterica serovar Hvittingfoss str. A4-620]
Length = 745
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS+ FV D ++V G VKV+++
Sbjct: 660 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVDDPHTVVKAGDIVKVKVL 719
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 720 EVDLQRKRIALTMR 733
>gi|386002501|ref|YP_005920800.1| RNA binding S1 domain-containing protein [Methanosaeta harundinacea
6Ac]
gi|357210557|gb|AET65177.1| RNA binding S1 domain protein [Methanosaeta harundinacea 6Ac]
Length = 735
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 55/83 (66%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K EDL PG + G V ++ FGAF+D G DGLVH S L+D FV+D +V V Q+V+V
Sbjct: 647 KIEDLRPGMSLPGTVTNVAAFGAFVDVGVHQDGLVHKSELADRFVRDPAEVVRVHQKVEV 706
Query: 201 RLIEANAETGRISLTMRESDDIS 223
+++ + E RISL+MR+ +++
Sbjct: 707 TVLKVDLERKRISLSMRKRLEVA 729
>gi|421497351|ref|ZP_15944522.1| paral putative RNase R [Aeromonas media WS]
gi|407183614|gb|EKE57500.1| paral putative RNase R [Aeromonas media WS]
Length = 770
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+P G V ++ FGAF+D G DGLVH+S L+D FVKD +V G V+V+++
Sbjct: 645 DLVPEMVLEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDRFVKDPREVVKAGDIVRVKVL 704
Query: 204 EANAETGRISLTMR 217
E +A RISLTMR
Sbjct: 705 EVDAPRKRISLTMR 718
>gi|410616111|ref|ZP_11327106.1| hypothetical protein GPLA_0325 [Glaciecola polaris LMG 21857]
gi|410164426|dbj|GAC31244.1| hypothetical protein GPLA_0325 [Glaciecola polaris LMG 21857]
Length = 776
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL G G V ++ FGAF+D G DGLVH+S ++D ++ D IV G VKV+++
Sbjct: 645 DLKEGMILEGVVSNVANFGAFVDVGVHQDGLVHISAMTDKYISDPREIVKTGDIVKVKVM 704
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQK 251
E + R+S TMR +DDI K Q + +K R + T+KP K
Sbjct: 705 EVDVSRKRVSFTMRLNDDI-KAQTNQGRNHDENKPRHGNKPTNKPQNK 751
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 17/121 (14%)
Query: 247 KPGQK-RDEMKTTKFVKG----------QDLEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT F +G LEG V N+ GAF+ + ++G + S
Sbjct: 622 KPGRDPRPEFKTATFKEGVSSLSDLKEGMILEGVVSNVANFGAFVDVGVHQDGLVHISAM 681
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKEDDVGSNLQLTQGVIHAATN 353
+D ++ ++ G V V+V+ +SR +V+ TM+ DD+ + Q QG H
Sbjct: 682 TDKYISD--PREIVKTGDIVKVKVMEVDVSRKRVSFTMRLNDDIKA--QTNQGRNHDENK 737
Query: 354 P 354
P
Sbjct: 738 P 738
>gi|418824357|ref|ZP_13379720.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 22462]
gi|392823214|gb|EJA79016.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 22462]
Length = 637
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS+ FV D ++V G VKV+++
Sbjct: 508 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVDDPHTVVKAGDIVKVKVL 567
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 568 EVDLQRKRIALTMR 581
>gi|419801486|ref|ZP_14326713.1| protein YhgF [Haemophilus parainfluenzae HK262]
gi|419846293|ref|ZP_14369546.1| protein YhgF [Haemophilus parainfluenzae HK2019]
gi|385193700|gb|EIF41057.1| protein YhgF [Haemophilus parainfluenzae HK262]
gi|386414033|gb|EIJ28602.1| protein YhgF [Haemophilus parainfluenzae HK2019]
Length = 770
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 53/92 (57%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LSD FV+D +V G VKV+++
Sbjct: 647 DLKPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGDIVKVKVL 706
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASG 235
E + RI+LTMR + K + D T S
Sbjct: 707 EVDVPRKRIALTMRLDESAVKNDSKSDRTLSA 738
Score = 40.4 bits (93), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 15/107 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT F +G + LEGTV N+T GAF+ + ++G + S
Sbjct: 624 KPGRDPRGEFKTAVFAEGVEEITDLKPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSL 683
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKKEDDVGSN 340
SD + ++ G V V+VL + R ++ LTM+ ++ N
Sbjct: 684 SDKFVED--PHQVVKTGDIVKVKVLEVDVPRKRIALTMRLDESAVKN 728
>gi|336398999|ref|ZP_08579799.1| Tex-like protein [Prevotella multisaccharivorax DSM 17128]
gi|336068735|gb|EGN57369.1| Tex-like protein [Prevotella multisaccharivorax DSM 17128]
Length = 716
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 50/77 (64%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K EDL+P G V +I FGAF+D G DGL+H+S+L+D FV D IV + Q V+V
Sbjct: 635 KPEDLVPMMELPGVVTNITNFGAFVDIGVHQDGLIHISQLADKFVHDPNDIVKLHQHVRV 694
Query: 201 RLIEANAETGRISLTMR 217
+++E + RI+LTM+
Sbjct: 695 KVLEVDNRRHRIALTMK 711
>gi|392544235|ref|ZP_10291372.1| hypothetical protein PpisJ2_20782 [Pseudoalteromonas piscicida JCM
20779]
Length = 770
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 52/86 (60%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL G G V ++ FGAF+D G DGLVH+S L+D F+ D +V G VKV++I
Sbjct: 645 DLKVGMILEGVVSNVANFGAFVDVGVHQDGLVHISALTDKFISDPREVVKAGDIVKVKVI 704
Query: 204 EANAETGRISLTMRESDDISKLQQQK 229
E + RIS TMR +D+IS+ QK
Sbjct: 705 EVDVPRKRISFTMRLNDEISQAPAQK 730
>gi|374333365|ref|YP_005083549.1| RNA binding S1 domain-containing protein [Pseudovibrio sp. FO-BEG1]
gi|359346153|gb|AEV39527.1| RNA binding S1 domain protein [Pseudovibrio sp. FO-BEG1]
Length = 818
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 49/76 (64%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVHVS+L+D FV D ++V G VKVR+
Sbjct: 667 QDLKPGMMLEGTVTNVTNFGAFVDIGVHQDGLVHVSQLADRFVDDPHTVVKAGDIVKVRV 726
Query: 203 IEANAETGRISLTMRE 218
+E + RI LT+R+
Sbjct: 727 VEVDIARKRIGLTLRK 742
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 15/101 (14%)
Query: 247 KPGQK-RDEMKTTKFVKG----QDL------EGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT F G QDL EGTV N+T GAF+ + ++G + S+
Sbjct: 645 KPGRDPRPEFKTASFQDGVETMQDLKPGMMLEGTVTNVTNFGAFVDIGVHQDGLVHVSQL 704
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKE 334
+D + + ++ G V VRV+ I+R ++ LT++K+
Sbjct: 705 ADRFVDDPH--TVVKAGDIVKVRVVEVDIARKRIGLTLRKD 743
>gi|226947398|ref|YP_002802489.1| RNA-binding protein [Clostridium botulinum A2 str. Kyoto]
gi|226841768|gb|ACO84434.1| RNA-binding protein [Clostridium botulinum A2 str. Kyoto]
Length = 718
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 50/74 (67%)
Query: 145 LIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIE 204
L P G VR++ FGAF+D G DGLVH+S+LSD+FVK IV VG V+VR++E
Sbjct: 645 LKPDMVLMGTVRNVADFGAFVDIGVHQDGLVHISQLSDSFVKHPLDIVKVGDIVEVRILE 704
Query: 205 ANAETGRISLTMRE 218
+ + RISL+M++
Sbjct: 705 VDQKRNRISLSMKK 718
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP K + T+ L GTV+N+ GAF+ + ++G + S+ SD
Sbjct: 624 RDPREDLPKPILKTGIVDITQLKPDMVLMGTVRNVADFGAFVDIGVHQDGLVHISQLSDS 683
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKK 333
+ + ++VG V VR+L + R +++L+MKK
Sbjct: 684 FVKHPL--DIVKVGDIVEVRILEVDQKRNRISLSMKK 718
>gi|168177509|ref|ZP_02612173.1| RNA-binding protein [Clostridium botulinum NCTC 2916]
gi|182670333|gb|EDT82307.1| RNA-binding protein [Clostridium botulinum NCTC 2916]
Length = 718
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 50/74 (67%)
Query: 145 LIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIE 204
L P G VR++ FGAF+D G DGLVH+S+LSD+FVK IV VG V+VR++E
Sbjct: 645 LKPDMVLMGTVRNVADFGAFVDIGVHQDGLVHISQLSDSFVKHPLDIVKVGDIVEVRILE 704
Query: 205 ANAETGRISLTMRE 218
+ + RISL+M++
Sbjct: 705 VDQKRNRISLSMKK 718
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP K + T+ L GTV+N+ GAF+ + ++G + S+ SD
Sbjct: 624 RDPREDLPKPILKTGIVDITQLKPDMVLMGTVRNVADFGAFVDIGVHQDGLVHISQLSDS 683
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKK 333
+ + ++VG V VR+L + R +++L+MKK
Sbjct: 684 FVKHPL--DIVKVGDIVEVRILEVDQKRNRISLSMKK 718
>gi|85710776|ref|ZP_01041837.1| Transcriptional accessory protein [Idiomarina baltica OS145]
gi|85695180|gb|EAQ33117.1| Transcriptional accessory protein [Idiomarina baltica OS145]
Length = 768
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 49/80 (61%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG T G V ++ FGAF+D G DGLVH+S L+D FV D IV G V V
Sbjct: 643 KVSDLEPGMTLEGVVTNVANFGAFVDIGVHQDGLVHISALADTFVSDPRDIVKAGDIVTV 702
Query: 201 RLIEANAETGRISLTMRESD 220
R++E + + RI L+MR+ D
Sbjct: 703 RVVEVDIDRKRIGLSMRKDD 722
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 15/111 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
+R R KPG+ R E KT +F +G + LEG V N+ GAF+ + +
Sbjct: 614 LRDIVRELEKPGRDPRPEFKTAQFKEGVEKVSDLEPGMTLEGVVTNVANFGAFVDIGVHQ 673
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKED 335
+G + S +D ++ ++ G V+VRV+ I R ++ L+M+K+D
Sbjct: 674 DGLVHISALADTFVSD--PRDIVKAGDIVTVRVVEVDIDRKRIGLSMRKDD 722
>gi|430761730|ref|YP_007217587.1| Transcription accessory protein (S1 RNA-binding domain)
[Thioalkalivibrio nitratireducens DSM 14787]
gi|430011354|gb|AGA34106.1| Transcription accessory protein (S1 RNA-binding domain)
[Thioalkalivibrio nitratireducens DSM 14787]
Length = 786
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 63/111 (56%), Gaps = 5/111 (4%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S L+D FVKD +V+ G VKV++
Sbjct: 649 KDLKPGMVLEGTVTNVTNFGAFVDIGVHQDGLVHISALADRFVKDPHEVVAPGDIVKVKV 708
Query: 203 IEANAETGRISLTMRESD----DISKLQQQKDATA-SGDKVRTTRRSTSKP 248
+E + RI+LT R + S+ +DA A GD+ + +R KP
Sbjct: 709 LEVDLARKRIALTRRLEEPAEPGTSRGPANRDAKAPRGDRNKAAQRRPGKP 759
>gi|387816403|ref|YP_005676747.1| transcription accessory protein (S1 RNA-binding domain)
[Clostridium botulinum H04402 065]
gi|322804444|emb|CBZ01994.1| transcription accessory protein (S1 RNA-binding domain)
[Clostridium botulinum H04402 065]
Length = 718
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 50/74 (67%)
Query: 145 LIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIE 204
L P G VR++ FGAF+D G DGLVH+S+LSD+FVK IV VG V+VR++E
Sbjct: 645 LKPDMVLMGTVRNVADFGAFVDIGVHQDGLVHISQLSDSFVKHPLDIVKVGDIVEVRILE 704
Query: 205 ANAETGRISLTMRE 218
+ + RISL+M++
Sbjct: 705 VDQKRNRISLSMKK 718
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP K + T+ L GTV+N+ GAF+ + ++G + S+ SD
Sbjct: 624 RDPREDLPKPILKTGIVDITQLKPDMVLMGTVRNVADFGAFVDIGVHQDGLVHISQLSDS 683
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKK 333
+ + ++VG V VR+L + R +++L+MKK
Sbjct: 684 FVKHPL--DIVKVGDIVEVRILEVDQKRNRISLSMKK 718
>gi|254465355|ref|ZP_05078766.1| S1 RNA binding domain protein [Rhodobacterales bacterium Y4I]
gi|206686263|gb|EDZ46745.1| S1 RNA binding domain protein [Rhodobacterales bacterium Y4I]
Length = 788
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 55/109 (50%), Gaps = 11/109 (10%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVHVS+L+D FVKD +V GQ VKV +
Sbjct: 645 DLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKTGQVVKVTVT 704
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKR 252
E + RI LTM+ KD AS + R R G R
Sbjct: 705 EVDVPRKRIGLTMK-----------KDGGASAKEDRAARGPAKGAGLHR 742
>gi|153941426|ref|YP_001389539.1| RNA-binding protein [Clostridium botulinum F str. Langeland]
gi|384460620|ref|YP_005673215.1| RNA-binding protein [Clostridium botulinum F str. 230613]
gi|152937322|gb|ABS42820.1| RNA-binding protein [Clostridium botulinum F str. Langeland]
gi|295317637|gb|ADF98014.1| RNA-binding protein [Clostridium botulinum F str. 230613]
Length = 718
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 50/74 (67%)
Query: 145 LIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIE 204
L P G VR++ FGAF+D G DGLVH+S+LSD+FVK IV VG V+VR++E
Sbjct: 645 LKPDMVLMGTVRNVADFGAFVDIGVHQDGLVHISQLSDSFVKHPLDIVKVGDIVEVRILE 704
Query: 205 ANAETGRISLTMRE 218
+ + RISL+M++
Sbjct: 705 VDKKRNRISLSMKK 718
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP K + T+ L GTV+N+ GAF+ + ++G + S+ SD
Sbjct: 624 RDPREDLPKPILKTGIVDITQLKPDMVLMGTVRNVADFGAFVDIGVHQDGLVHISQLSDS 683
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKK 333
+ + ++VG V VR+L + R +++L+MKK
Sbjct: 684 FVKHPL--DIVKVGDIVEVRILEVDKKRNRISLSMKK 718
>gi|395764428|ref|ZP_10445097.1| Tex transcriptional accessory protein [Janthinobacterium lividum
PAMC 25724]
Length = 782
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 62/108 (57%), Gaps = 12/108 (11%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL P G V ++ FGAF+D G DGLVH+S LS FVKD ++V GQ V+V+++
Sbjct: 659 DLRPDMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSSTFVKDPHTVVKAGQVVRVKVL 718
Query: 204 EANAETGRISLTMRESDDI----SKLQQQKDATASGDKVRTTRRSTSK 247
E + + RI+LTMR +D SK +Q+ D R RRS ++
Sbjct: 719 EVDEKRKRIALTMRLTDSAPQAGSKPEQKGD--------RNDRRSMAQ 758
>gi|445269801|ref|ZP_21410267.1| putative transcriptional accessory protein, partial [Salmonella
enterica subsp. enterica serovar Enteritidis str. 436]
gi|444888050|gb|ELY11684.1| putative transcriptional accessory protein, partial [Salmonella
enterica subsp. enterica serovar Enteritidis str. 436]
Length = 620
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS+ FV D ++V G VKV+++
Sbjct: 491 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVDDPHTVVKAGDIVKVKVL 550
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 551 EVDLQRKRIALTMR 564
>gi|307261748|ref|ZP_07543414.1| hypothetical protein appser12_13070 [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|306868566|gb|EFN00377.1| hypothetical protein appser12_13070 [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
Length = 779
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL G G V ++ FGAF+D G DGLVH+S LS++FV+D +V VG VKV++
Sbjct: 653 KDLKVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHKVVKVGDLVKVKV 712
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSK 247
+E + + RI+LTMR D + D ASG + R+++ K
Sbjct: 713 LEVDVQRKRIALTMRLED------KPTDKPASGRNPQENRKNSEK 751
Score = 42.4 bits (98), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 15/102 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT F+ G + LEGTV N+ GAF+ + ++G + S
Sbjct: 631 KPGRDPRGEFKTATFMDGVEDIKDLKVGMILEGTVTNVANFGAFVDIGVHQDGLVHISML 690
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKED 335
S+ + ++VG V V+VL + R ++ LTM+ ED
Sbjct: 691 SNSFVED--PHKVVKVGDLVKVKVLEVDVQRKRIALTMRLED 730
>gi|219883220|ref|YP_002478382.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7425]
gi|219867345|gb|ACL47683.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7425]
Length = 763
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL G G V ++ FGAF+D G DGLVHVS+L+D FV D IV VGQ V VR++
Sbjct: 642 DLSVGMQLEGMVTNVANFGAFVDIGVHQDGLVHVSQLADRFVSDPKQIVKVGQVVNVRVL 701
Query: 204 EANAETGRISLTMR 217
E + + RISL+MR
Sbjct: 702 EVDEKLKRISLSMR 715
>gi|438142063|ref|ZP_20875186.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Pullorum str. ATCC 9120]
gi|434939558|gb|ELL46353.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Pullorum str. ATCC 9120]
Length = 802
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS+ FV D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVDDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|342903298|ref|ZP_08725109.1| putative ribosomal protein S1, RNA-binding domain-containing
protein [Haemophilus haemolyticus M21621]
gi|341955402|gb|EGT81858.1| putative ribosomal protein S1, RNA-binding domain-containing
protein [Haemophilus haemolyticus M21621]
Length = 770
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 56/100 (56%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LSD FV+D +V G VKV+++
Sbjct: 647 DLKPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGDIVKVKVL 706
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRR 243
E + RI+LTMR + K + D T S T+R
Sbjct: 707 EVDVTRKRIALTMRLDESAVKNDGKSDRTLSARPRGNTQR 746
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 15/107 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT F +G + LEGTV N+T GAF+ + ++G + S
Sbjct: 624 KPGRDPRGEFKTAVFAEGVEEITDLKPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSL 683
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKEDDVGSN 340
SD + ++ G V V+VL ++R ++ LTM+ ++ N
Sbjct: 684 SDKFVED--PHQVVKTGDIVKVKVLEVDVTRKRIALTMRLDESAVKN 728
>gi|314934139|ref|ZP_07841500.1| S1 RNA binding domain protein [Staphylococcus caprae C87]
gi|313653044|gb|EFS16805.1| S1 RNA binding domain protein [Staphylococcus caprae C87]
Length = 716
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 72/137 (52%), Gaps = 19/137 (13%)
Query: 99 GASDIPSDVETSESSSIKSEA--------SPTLAESRRSRTA------RKSEMPPVKN-- 142
GA+DI +D S S + E PTL + +S A + E P +K+
Sbjct: 575 GANDIGTDQLKSTLSDVNIEGLAKQLNIGEPTLEDIIKSLIAPNRDPRDEFETPILKSDV 634
Query: 143 ---EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
EDL G G VR++ FGAFID G DGLVHVS+LS FVK+ IVSVG V
Sbjct: 635 LSIEDLNEGMKLNGTVRNVVDFGAFIDIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDIVD 694
Query: 200 VRLIEANAETGRISLTM 216
V +++ + G++SLTM
Sbjct: 695 VWILDIDENKGKVSLTM 711
Score = 42.7 bits (99), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R P K D + +G L GTV+N+ GAFI + ++G + S+ S
Sbjct: 619 RDPRDEFETPILKSDVLSIEDLNEGMKLNGTVRNVVDFGAFIDIGVKQDGLVHVSKLSKK 678
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTM 331
N M S VG V V +L I ++G+V+LTM
Sbjct: 679 FVKNPMDIVS--VGDIVDVWILDIDENKGKVSLTM 711
>gi|170761041|ref|YP_001785504.1| RNA-binding protein [Clostridium botulinum A3 str. Loch Maree]
gi|169408030|gb|ACA56441.1| RNA-binding protein [Clostridium botulinum A3 str. Loch Maree]
Length = 718
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 50/74 (67%)
Query: 145 LIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIE 204
L P G VR++ FGAF+D G DGLVH+S+LSD+FVK IV VG V+VR++E
Sbjct: 645 LKPDMVLMGTVRNVADFGAFVDIGVHQDGLVHISQLSDSFVKHPLDIVKVGDIVEVRILE 704
Query: 205 ANAETGRISLTMRE 218
+ + RISL+M++
Sbjct: 705 VDRKRNRISLSMKK 718
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP K + T+ L GTV+N+ GAF+ + ++G + S+ SD
Sbjct: 624 RDPREDLPKPILKTGIVDITQLKPDMVLMGTVRNVADFGAFVDIGVHQDGLVHISQLSDS 683
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKK 333
+ + ++VG V VR+L + R +++L+MKK
Sbjct: 684 FVKHPL--DIVKVGDIVEVRILEVDRKRNRISLSMKK 718
>gi|307257325|ref|ZP_07539095.1| hypothetical protein appser10_13230 [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306864175|gb|EFM96088.1| hypothetical protein appser10_13230 [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
Length = 779
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL G G V ++ FGAF+D G DGLVH+S LS++FV+D +V VG VKV++
Sbjct: 653 KDLKVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHKVVKVGDLVKVKV 712
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSK 247
+E + + RI+LTMR D + D ASG + R+++ K
Sbjct: 713 LEVDVQRKRIALTMRLED------KPTDKPASGRNPQENRKNSEK 751
Score = 42.4 bits (98), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 15/102 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT F+ G + LEGTV N+ GAF+ + ++G + S
Sbjct: 631 KPGRDPRGEFKTATFMDGVEDIKDLKVGMILEGTVTNVANFGAFVDIGVHQDGLVHISML 690
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKED 335
S+ + ++VG V V+VL + R ++ LTM+ ED
Sbjct: 691 SNSFVED--PHKVVKVGDLVKVKVLEVDVQRKRIALTMRLED 730
>gi|307250521|ref|ZP_07532466.1| hypothetical protein appser4_13020 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306857463|gb|EFM89574.1| hypothetical protein appser4_13020 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
Length = 779
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL G G V ++ FGAF+D G DGLVH+S LS++FV+D +V VG VKV++
Sbjct: 653 KDLKVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHKVVKVGDLVKVKV 712
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSK 247
+E + + RI+LTMR D + D ASG + R+++ K
Sbjct: 713 LEVDVQRKRIALTMRLED------KPTDKPASGRNPQENRKNSEK 751
Score = 42.4 bits (98), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 15/102 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT F+ G + LEGTV N+ GAF+ + ++G + S
Sbjct: 631 KPGRDPRGEFKTATFMDGVEDIKDLKVGMILEGTVTNVANFGAFVDIGVHQDGLVHISML 690
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKED 335
S+ + ++VG V V+VL + R ++ LTM+ ED
Sbjct: 691 SNSFVED--PHKVVKVGDLVKVKVLEVDVQRKRIALTMRLED 730
>gi|190150591|ref|YP_001969116.1| transcriptional accessory protein [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|307263935|ref|ZP_07545539.1| hypothetical protein appser13_13440 [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|189915722|gb|ACE61974.1| predicted transcriptional accessory protein [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|306870800|gb|EFN02540.1| hypothetical protein appser13_13440 [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 779
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL G G V ++ FGAF+D G DGLVH+S LS++FV+D +V VG VKV++
Sbjct: 653 KDLKVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHKVVKVGDLVKVKV 712
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSK 247
+E + + RI+LTMR D + D ASG + R+++ K
Sbjct: 713 LEVDVQRKRIALTMRLED------KPTDKPASGRNPQENRKNSEK 751
Score = 42.4 bits (98), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 15/102 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT F+ G + LEGTV N+ GAF+ + ++G + S
Sbjct: 631 KPGRDPRGEFKTATFMDGVEDIKDLKVGMILEGTVTNVANFGAFVDIGVHQDGLVHISML 690
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKED 335
S+ + ++VG V V+VL + R ++ LTM+ ED
Sbjct: 691 SNSFVED--PHKVVKVGDLVKVKVLEVDVQRKRIALTMRLED 730
>gi|399909331|ref|ZP_10777883.1| ribonuclease RNAse H [Halomonas sp. KM-1]
Length = 784
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 49/78 (62%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S LSD FV+D S+V G VKV++
Sbjct: 652 KDLEPGMILEGSVTNVTHFGAFVDIGVHQDGLVHISALSDKFVEDPRSVVKAGDIVKVKV 711
Query: 203 IEANAETGRISLTMRESD 220
+ + E RI L+MR D
Sbjct: 712 MSVDLERARIGLSMRLDD 729
>gi|397625080|gb|EJK67660.1| hypothetical protein THAOC_11280 [Thalassiosira oceanica]
Length = 405
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 124/255 (48%), Gaps = 24/255 (9%)
Query: 96 DSAGASDIPSDVETSESSSIKSEASPTLAESRRS---RTARKSEMPPVKNEDLIPGATFT 152
D+A IP+DVE + + + EA +R S + + + DL GA
Sbjct: 94 DTAVEEAIPADVEAMDGINSEEEAHNVERPARGSGIHKHHKDDKKSRTALGDLEIGAEVK 153
Query: 153 GKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRI 212
V++I +GAFID GA +D L+HVSRLSD+FV +V +V G E+ VR++ + E +I
Sbjct: 154 ATVKTIASYGAFIDIGAASDALLHVSRLSDDFVANVEDVVKKGDEISVRIMSVDTEKNQI 213
Query: 213 SLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFV--KGQD----L 266
++TMR + +K + ++G R R G K + T + KG D +
Sbjct: 214 AVTMRSPEAEAKAAE---GGSTGRPQRRRDRPQRSNGDKAAQAATINALVEKGFDEEKFV 270
Query: 267 EGTVKNLTRSGAFISLP-------EGE-EGFLPTSEESDDGFANMMGGSSLQVGQEVSVR 318
EG V + GAF+ EGE +G + S + +G N + + VG +V VR
Sbjct: 271 EGEVVSSLDFGAFVRFDTAQVGEFEGEVDGLVHISALA-EGRVNTV-SDIVAVGDKVQVR 328
Query: 319 VLRIS--RGQVTLTM 331
+ + G+V+L+M
Sbjct: 329 IRTVDAEAGRVSLSM 343
>gi|307246188|ref|ZP_07528270.1| hypothetical protein appser1_13930 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307255169|ref|ZP_07536987.1| hypothetical protein appser9_14050 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307259606|ref|ZP_07541331.1| hypothetical protein appser11_14050 [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306853123|gb|EFM85346.1| hypothetical protein appser1_13930 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306862042|gb|EFM94018.1| hypothetical protein appser9_14050 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306866542|gb|EFM98405.1| hypothetical protein appser11_14050 [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
Length = 779
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL G G V ++ FGAF+D G DGLVH+S LS++FV+D +V VG VKV++
Sbjct: 653 KDLKVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHKVVKVGDLVKVKV 712
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSK 247
+E + + RI+LTMR D + D ASG + R+++ K
Sbjct: 713 LEVDVQRKRIALTMRLED------KPTDKPASGRNPQENRKNSEK 751
Score = 42.4 bits (98), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 15/102 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT F+ G + LEGTV N+ GAF+ + ++G + S
Sbjct: 631 KPGRDPRGEFKTATFMDGVEDIKDLKVGMILEGTVTNVANFGAFVDIGVHQDGLVHISML 690
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKED 335
S+ + ++VG V V+VL + R ++ LTM+ ED
Sbjct: 691 SNSFVED--PHKVVKVGDLVKVKVLEVDVQRKRIALTMRLED 730
>gi|165976690|ref|YP_001652283.1| transcriptional accessory protein [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|165876791|gb|ABY69839.1| predicted transcriptional accessory protein [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
Length = 779
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL G G V ++ FGAF+D G DGLVH+S LS++FV+D +V VG VKV++
Sbjct: 653 KDLKVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHKVVKVGDLVKVKV 712
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSK 247
+E + + RI+LTMR D + D ASG + R+++ K
Sbjct: 713 LEVDVQRKRIALTMRLED------KPTDKPASGRNPQENRKNSEK 751
Score = 42.4 bits (98), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 15/102 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT F+ G + LEGTV N+ GAF+ + ++G + S
Sbjct: 631 KPGRDPRGEFKTATFMDGVEDIKDLKVGMILEGTVTNVANFGAFVDIGVHQDGLVHISML 690
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKED 335
S+ + ++VG V V+VL + R ++ LTM+ ED
Sbjct: 691 SNSFVED--PHKVVKVGDLVKVKVLEVDVQRKRIALTMRLED 730
>gi|392549414|ref|ZP_10296551.1| hypothetical protein PrubA2_23852 [Pseudoalteromonas rubra ATCC
29570]
Length = 778
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 59/108 (54%), Gaps = 10/108 (9%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL G T G V ++ FGAF+D G DGLVH+S L+D F+ D +V G VKV++I
Sbjct: 645 DLKVGMTLEGVVSNVANFGAFVDVGVHQDGLVHISALTDKFISDPREVVKAGDIVKVKVI 704
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQK 251
E + RIS TMR +D+I QK ++ +T KPG K
Sbjct: 705 EVDVARKRISFTMRLNDEIPASTGQKQ----------SKPTTQKPGGK 742
>gi|385681617|ref|ZP_10055545.1| transcriptional accessory protein [Amycolatopsis sp. ATCC 39116]
Length = 783
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 50/79 (63%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVHVS +S NFVKD +V G VKV+++
Sbjct: 656 DLKPGMRLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSKNFVKDPREVVKPGDIVKVKVL 715
Query: 204 EANAETGRISLTMRESDDI 222
E + RISLT+R D++
Sbjct: 716 EVDIPRKRISLTLRLDDEV 734
>gi|374322740|ref|YP_005075869.1| hypothetical protein HPL003_14475 [Paenibacillus terrae HPL-003]
gi|357201749|gb|AET59646.1| hypothetical protein HPL003_14475 [Paenibacillus terrae HPL-003]
Length = 740
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 50/78 (64%)
Query: 140 VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
+K EDL PG G VR++ FGAF+D G +DGLVH+S+L FVK +VSVG V
Sbjct: 654 LKIEDLAPGMELQGTVRNVIDFGAFVDIGIKSDGLVHISQLRSGFVKHPMDVVSVGDNVT 713
Query: 200 VRLIEANAETGRISLTMR 217
V ++ + + GR+ LTM+
Sbjct: 714 VWVLNVDLKKGRVGLTMK 731
Score = 42.7 bits (99), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R P ++D +K G +L+GTV+N+ GAF+ + +G + S+
Sbjct: 638 RDPRDELPLPVFRKDVLKIEDLAPGMELQGTVRNVIDFGAFVDIGIKSDGLVHISQLRSG 697
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMK 332
+ M S VG V+V VL + +G+V LTMK
Sbjct: 698 FVKHPMDVVS--VGDNVTVWVLNVDLKKGRVGLTMK 731
>gi|357050163|ref|ZP_09111371.1| hypothetical protein HMPREF9478_01354 [Enterococcus saccharolyticus
30_1]
gi|355381986|gb|EHG29096.1| hypothetical protein HMPREF9478_01354 [Enterococcus saccharolyticus
30_1]
Length = 727
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 48/74 (64%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG G VR++ FGAF+D G DGLVH+S+LS NFVK +V+VG V V +
Sbjct: 647 EDLKPGMELMGTVRNVIDFGAFVDIGVKQDGLVHLSKLSRNFVKHPKDVVAVGDIVTVWI 706
Query: 203 IEANAETGRISLTM 216
+ + GRISLTM
Sbjct: 707 EQVDTTKGRISLTM 720
>gi|310640779|ref|YP_003945537.1| tex protein [Paenibacillus polymyxa SC2]
gi|386039889|ref|YP_005958843.1| protein YhgF [Paenibacillus polymyxa M1]
gi|309245729|gb|ADO55296.1| Tex-like protein protein-like protein [Paenibacillus polymyxa SC2]
gi|343095927|emb|CCC84136.1| protein YhgF [Paenibacillus polymyxa M1]
Length = 753
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 50/78 (64%)
Query: 140 VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
+K EDL PG G VR++ FGAF+D G +DGLVH+S+L FVK +VSVG V
Sbjct: 667 LKIEDLAPGMELQGTVRNVIDFGAFVDIGIKSDGLVHISQLRSGFVKHPMDVVSVGDNVT 726
Query: 200 VRLIEANAETGRISLTMR 217
V ++ + + GR+ LTM+
Sbjct: 727 VWVLNVDLKKGRVGLTMK 744
Score = 42.4 bits (98), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R P ++D +K G +L+GTV+N+ GAF+ + +G + S+
Sbjct: 651 RDPRDELPLPVFRKDVLKIEDLAPGMELQGTVRNVIDFGAFVDIGIKSDGLVHISQLRSG 710
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMK 332
+ M + VG V+V VL + +G+V LTMK
Sbjct: 711 FVKHPM--DVVSVGDNVTVWVLNVDLKKGRVGLTMK 744
>gi|331654984|ref|ZP_08355983.1| protein YhgF [Escherichia coli M718]
gi|331046999|gb|EGI19077.1| protein YhgF [Escherichia coli M718]
Length = 773
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D S+V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHSVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
Score = 38.9 bits (89), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 15/105 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT +F G + LEG V N+T GAF+ + ++G + S
Sbjct: 624 KPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSL 683
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDDVG 338
S+ + S ++ G V V+VL + R ++ LTM+ ++ G
Sbjct: 684 SNKFVED--PHSVVKAGDIVKVKVLEVDLQRKRIALTMRLDEQPG 726
>gi|168182214|ref|ZP_02616878.1| RNA-binding protein [Clostridium botulinum Bf]
gi|237793495|ref|YP_002861047.1| RNA-binding protein [Clostridium botulinum Ba4 str. 657]
gi|182674704|gb|EDT86665.1| RNA-binding protein [Clostridium botulinum Bf]
gi|229263673|gb|ACQ54706.1| RNA-binding protein [Clostridium botulinum Ba4 str. 657]
Length = 718
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 49/74 (66%)
Query: 145 LIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIE 204
L P G VR++ FGAF+D G DGLVH+S+LSD FVK IV VG V+VR++E
Sbjct: 645 LKPDMVLMGTVRNVADFGAFVDIGVHQDGLVHISQLSDRFVKHPLDIVKVGDIVEVRILE 704
Query: 205 ANAETGRISLTMRE 218
+ + RISL+M++
Sbjct: 705 VDQKRNRISLSMKK 718
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP K + T+ L GTV+N+ GAF+ + ++G + S+ SD
Sbjct: 624 RDPREDLPKPILKTGIVDITQLKPDMVLMGTVRNVADFGAFVDIGVHQDGLVHISQLSDR 683
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKK 333
+ + ++VG V VR+L + R +++L+MKK
Sbjct: 684 FVKHPL--DIVKVGDIVEVRILEVDQKRNRISLSMKK 718
>gi|126208738|ref|YP_001053963.1| transcriptional accessory protein [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|126097530|gb|ABN74358.1| predicted transcriptional accessory protein [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
Length = 779
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL G G V ++ FGAF+D G DGLVH+S LS++FV+D +V VG VKV++
Sbjct: 653 KDLKVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHKVVKVGDLVKVKV 712
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSK 247
+E + + RI+LTMR D + D ASG + R+++ K
Sbjct: 713 LEVDVQRKRIALTMRLED------KPTDKPASGRNPQENRKNSEK 751
Score = 42.4 bits (98), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 15/102 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT F+ G + LEGTV N+ GAF+ + ++G + S
Sbjct: 631 KPGRDPRGEFKTATFMDGVEDIKDLKVGMILEGTVTNVANFGAFVDIGVHQDGLVHISML 690
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKED 335
S+ + ++VG V V+VL + R ++ LTM+ ED
Sbjct: 691 SNSFVED--PHKVVKVGDLVKVKVLEVDVQRKRIALTMRLED 730
>gi|223043965|ref|ZP_03614006.1| conserved hypothetical protein [Staphylococcus capitis SK14]
gi|417906648|ref|ZP_12550429.1| Tex-like protein N-terminal domain protein [Staphylococcus capitis
VCU116]
gi|222442680|gb|EEE48784.1| conserved hypothetical protein [Staphylococcus capitis SK14]
gi|341597650|gb|EGS40196.1| Tex-like protein N-terminal domain protein [Staphylococcus capitis
VCU116]
Length = 716
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 72/137 (52%), Gaps = 19/137 (13%)
Query: 99 GASDIPSDVETSESSSIKSEA--------SPTLAESRRSRTA------RKSEMPPVKN-- 142
GA+DI +D S S + E PTL + +S A + E P +K+
Sbjct: 575 GANDIGTDQLKSTLSDVNIEGLAKQLNIGKPTLEDIIKSLIAPNRDPRDEFETPILKSDV 634
Query: 143 ---EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
EDL G G VR++ FGAFID G DGLVHVS+LS FVK+ IVSVG V
Sbjct: 635 LSIEDLNEGMKLNGTVRNVVDFGAFIDIGVKQDGLVHVSKLSKKFVKNPMDIVSVGDIVD 694
Query: 200 VRLIEANAETGRISLTM 216
V +++ + G++SLTM
Sbjct: 695 VWILDIDENKGKVSLTM 711
Score = 42.7 bits (99), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R P K D + +G L GTV+N+ GAFI + ++G + S+ S
Sbjct: 619 RDPRDEFETPILKSDVLSIEDLNEGMKLNGTVRNVVDFGAFIDIGVKQDGLVHVSKLSKK 678
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTM 331
N M S VG V V +L I ++G+V+LTM
Sbjct: 679 FVKNPMDIVS--VGDIVDVWILDIDENKGKVSLTM 711
>gi|339445158|ref|YP_004711162.1| hypothetical protein EGYY_16210 [Eggerthella sp. YY7918]
gi|338904910|dbj|BAK44761.1| hypothetical protein EGYY_16210 [Eggerthella sp. YY7918]
Length = 720
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 49/74 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG TG VR++ FGAF+D G DGLVH+S+L+D FV+ +VSVG V V +
Sbjct: 642 DDLTPGMELTGTVRNVVDFGAFVDIGVKQDGLVHISKLADRFVRHPSEVVSVGDTVTVWV 701
Query: 203 IEANAETGRISLTM 216
+ + G+ISLTM
Sbjct: 702 TGVDKDRGKISLTM 715
>gi|257869273|ref|ZP_05648926.1| RNA binding protein S1 [Enterococcus gallinarum EG2]
gi|257803437|gb|EEV32259.1| RNA binding protein S1 [Enterococcus gallinarum EG2]
Length = 727
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 48/74 (64%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG G VR++ FGAF+D G DGLVH+S+LS NFVK +V+VG V V +
Sbjct: 647 EDLRPGMELMGTVRNVIDFGAFVDIGVKQDGLVHLSKLSRNFVKHPKDVVAVGDIVTVWI 706
Query: 203 IEANAETGRISLTM 216
+ + GRISLTM
Sbjct: 707 EQVDTTKGRISLTM 720
>gi|347751935|ref|YP_004859500.1| Tex-like protein [Bacillus coagulans 36D1]
gi|347584453|gb|AEP00720.1| Tex-like protein [Bacillus coagulans 36D1]
Length = 725
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 52/81 (64%)
Query: 140 VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
+K EDL PG G VR++ FGAF+D G DGLVH+S+LS FVK IVSVG V
Sbjct: 645 MKLEDLKPGMEMQGTVRNVVDFGAFVDVGVKEDGLVHISKLSKGFVKHPLDIVSVGDIVT 704
Query: 200 VRLIEANAETGRISLTMRESD 220
V + + + + GR+SLTM +D
Sbjct: 705 VWVEKVDVQKGRLSLTMLPND 725
Score = 43.1 bits (100), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP K+D MK G +++GTV+N+ GAF+ + E+G + S+ S
Sbjct: 629 RDPRDELPKPLLKKDIMKLEDLKPGMEMQGTVRNVVDFGAFVDVGVKEDGLVHISKLS-K 687
Query: 299 GFANMMGGSSLQVGQEVSVRV--LRISRGQVTLTMKKED 335
GF + VG V+V V + + +G+++LTM D
Sbjct: 688 GFVK-HPLDIVSVGDIVTVWVEKVDVQKGRLSLTMLPND 725
>gi|303250647|ref|ZP_07336844.1| transcriptional accessory protein [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307252904|ref|ZP_07534793.1| hypothetical protein appser6_14160 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|302650635|gb|EFL80794.1| transcriptional accessory protein [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306859693|gb|EFM91717.1| hypothetical protein appser6_14160 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
Length = 779
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL G G V ++ FGAF+D G DGLVH+S LS++FV+D +V VG VKV++
Sbjct: 653 KDLKVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHKVVKVGDLVKVKV 712
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSK 247
+E + + RI+LTMR D + D ASG + R+++ K
Sbjct: 713 LEVDVQRKRIALTMRLED------KPTDKPASGRNPQENRKNSEK 751
Score = 42.4 bits (98), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 15/102 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT F+ G + LEGTV N+ GAF+ + ++G + S
Sbjct: 631 KPGRDPRGEFKTATFMDGVEDIKDLKVGMILEGTVTNVANFGAFVDIGVHQDGLVHISML 690
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKED 335
S+ + ++VG V V+VL + R ++ LTM+ ED
Sbjct: 691 SNSFVED--PHKVVKVGDLVKVKVLEVDVQRKRIALTMRLED 730
>gi|293393397|ref|ZP_06637709.1| YhgF like protein [Serratia odorifera DSM 4582]
gi|291424134|gb|EFE97351.1| YhgF like protein [Serratia odorifera DSM 4582]
Length = 807
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L+D FV+D S+V G VKV+++
Sbjct: 646 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHSVVKAGDIVKVKVM 705
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 706 EVDLQRKRIALTMR 719
>gi|302385050|ref|YP_003820872.1| Tex-like protein [Clostridium saccharolyticum WM1]
gi|302195678|gb|ADL03249.1| Tex-like protein protein-like protein [Clostridium saccharolyticum
WM1]
Length = 713
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 50/75 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G VR++ FGAF+D G DGLVH+S++SD F+K VSVG V+V++
Sbjct: 638 KDLQPGMVLKGTVRNVIDFGAFVDIGVHQDGLVHISQMSDKFIKHPLEAVSVGDIVEVKV 697
Query: 203 IEANAETGRISLTMR 217
I + + RI+LTM+
Sbjct: 698 ISVDVQKKRIALTMK 712
Score = 40.4 bits (93), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R P + D M+ G L+GTV+N+ GAF+ + ++G + S+ SD
Sbjct: 619 RDPRDQMPAPILRTDVMEMKDLQPGMVLKGTVRNVIDFGAFVDIGVHQDGLVHISQMSDK 678
Query: 299 GFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMK 332
+ + S VG V V+V+ + + ++ LTMK
Sbjct: 679 FIKHPLEAVS--VGDIVEVKVISVDVQKKRIALTMK 712
>gi|83745880|ref|ZP_00942937.1| TRANSCRIPTION ACCESSORY PROTEIN (S1 RNA binding domain) [Ralstonia
solanacearum UW551]
gi|83727570|gb|EAP74691.1| TRANSCRIPTION ACCESSORY PROTEIN (S1 RNA binding domain) [Ralstonia
solanacearum UW551]
Length = 1257
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 50/79 (63%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+ L PG G V ++ FGAFID G DGLVHVS LS FV+D +V GQ VKV++
Sbjct: 1136 KHLQPGMVLEGVVTNVAAFGAFIDIGVHQDGLVHVSALSTKFVRDPHEVVKPGQIVKVKV 1195
Query: 203 IEANAETGRISLTMRESDD 221
+E + + RI LTMR +D+
Sbjct: 1196 MEVDVKRNRIGLTMRLTDE 1214
>gi|383188224|ref|YP_005198352.1| transcriptional accessory protein [Rahnella aquatilis CIP 78.65 =
ATCC 33071]
gi|371586482|gb|AEX50212.1| transcriptional accessory protein [Rahnella aquatilis CIP 78.65 =
ATCC 33071]
Length = 776
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 50/74 (67%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S L++ FV+D ++V G VKV+++
Sbjct: 646 DLMPGMILEGSVTNVTNFGAFVDIGVHQDGLVHISSLANKFVEDPHTVVKAGDIVKVKVM 705
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 706 EVDLQRKRIALTMR 719
>gi|322830973|ref|YP_004211000.1| Tex-like protein [Rahnella sp. Y9602]
gi|321166174|gb|ADW71873.1| Tex-like protein [Rahnella sp. Y9602]
Length = 776
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 50/74 (67%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S L++ FV+D ++V G VKV+++
Sbjct: 646 DLMPGMILEGSVTNVTNFGAFVDIGVHQDGLVHISSLANKFVEDPHTVVKAGDIVKVKVM 705
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 706 EVDLQRKRIALTMR 719
>gi|384256143|ref|YP_005400077.1| putative transcriptional accessory protein [Rahnella aquatilis HX2]
gi|380752119|gb|AFE56510.1| putative transcriptional accessory protein [Rahnella aquatilis HX2]
Length = 776
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 50/74 (67%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S L++ FV+D ++V G VKV+++
Sbjct: 646 DLMPGMILEGSVTNVTNFGAFVDIGVHQDGLVHISSLANKFVEDPHTVVKAGDIVKVKVM 705
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 706 EVDLQRKRIALTMR 719
>gi|373466328|ref|ZP_09557646.1| Tex-like protein [Haemophilus sp. oral taxon 851 str. F0397]
gi|371760694|gb|EHO49367.1| Tex-like protein [Haemophilus sp. oral taxon 851 str. F0397]
Length = 772
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 56/100 (56%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LSD FV+D +V G VKV+++
Sbjct: 649 DLKPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGDIVKVKVL 708
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRR 243
E + RI+LTMR + K + D T S T+R
Sbjct: 709 EVDVPRKRIALTMRLDESAVKNDGKSDRTLSARPRGNTQR 748
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 15/107 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT F +G + LEGTV N+T GAF+ + ++G + S
Sbjct: 626 KPGRDPRGEFKTAVFAEGVEEITDLKPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSL 685
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKKEDDVGSN 340
SD + ++ G V V+VL + R ++ LTM+ ++ N
Sbjct: 686 SDKFVED--PHQVVKTGDIVKVKVLEVDVPRKRIALTMRLDESAVKN 730
>gi|418327517|ref|ZP_12938670.1| Tex-like protein N-terminal domain protein [Staphylococcus
epidermidis 14.1.R1.SE]
gi|365232875|gb|EHM73850.1| Tex-like protein N-terminal domain protein [Staphylococcus
epidermidis 14.1.R1.SE]
Length = 716
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 76/143 (53%), Gaps = 11/143 (7%)
Query: 85 VEESDSPAADDDSAGASDIPSDVETSESSSIKSEASPTLAESRRSRTA------RKSEMP 138
+ + D A D S ++ S+V S S + PTL + +S A + E P
Sbjct: 569 LHQLDLTAQDIGSVKLKNMLSNVNISTLVSQLNIGEPTLKDIIQSLIAPNRDPRDEFETP 628
Query: 139 PVKN-----EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVS 193
+K+ EDL G G VR++ FGAF+D G DGLVH+S+LS FVK+ I+S
Sbjct: 629 ILKSDVLSIEDLSKGMKLNGTVRNVVDFGAFVDIGVKQDGLVHISKLSKKFVKNPMDIIS 688
Query: 194 VGQEVKVRLIEANAETGRISLTM 216
VG V+V +++ + G++SLTM
Sbjct: 689 VGDIVEVWILDIDENKGKVSLTM 711
Score = 43.5 bits (101), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R P K D + KG L GTV+N+ GAF+ + ++G + S+ S
Sbjct: 619 RDPRDEFETPILKSDVLSIEDLSKGMKLNGTVRNVVDFGAFVDIGVKQDGLVHISKLSKK 678
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTM 331
N M + VG V V +L I ++G+V+LTM
Sbjct: 679 FVKNPM--DIISVGDIVEVWILDIDENKGKVSLTM 711
>gi|114762771|ref|ZP_01442205.1| S1 RNA binding domain protein [Pelagibaca bermudensis HTCC2601]
gi|114544681|gb|EAU47687.1| S1 RNA binding domain protein [Roseovarius sp. HTCC2601]
Length = 771
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 48/75 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG + G V ++ FGAF+D G DGLVHVS+L+D FVKD +V G V+VR+
Sbjct: 644 DLKPGMSLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVRVRVT 703
Query: 204 EANAETGRISLTMRE 218
E + RI L+MR+
Sbjct: 704 EVDVPRKRIGLSMRK 718
>gi|386714595|ref|YP_006180918.1| 30S ribosomal protein S1 [Halobacillus halophilus DSM 2266]
gi|384074151|emb|CCG45644.1| 30S ribosomal protein S1 [Halobacillus halophilus DSM 2266]
Length = 380
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 93/188 (49%), Gaps = 34/188 (18%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G G V+ + FGAF++ G DGLVH+S+LS V+ +V GQ VKV+++ +
Sbjct: 188 GQVIEGTVQRLTDFGAFVNLGGI-DGLVHISQLSHQHVEKASDVVEEGQTVKVKVLSVDR 246
Query: 208 ETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLE 267
+ RISL+++ ++PG D + K +G+ LE
Sbjct: 247 DNERISLSLK---------------------------ATQPGPWHDIQEKVK--QGEVLE 277
Query: 268 GTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI--SRG 325
GTV+ L GAF+ + G EG + S+ S+ G L+ GQ+V V+VL +
Sbjct: 278 GTVRRLVSFGAFVEVFPGVEGLVHISQISNRHIGT--PGEVLEEGQQVQVKVLDVDGEAK 335
Query: 326 QVTLTMKK 333
+++L+MK+
Sbjct: 336 RLSLSMKE 343
>gi|336451908|ref|ZP_08622342.1| transcriptional accessory protein [Idiomarina sp. A28L]
gi|336281241|gb|EGN74524.1| transcriptional accessory protein [Idiomarina sp. A28L]
Length = 791
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 52/81 (64%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL G T G V ++ FGAF+D G DGLVH+S +SD F+ D IV G VKV++
Sbjct: 649 KDLKIGMTLEGVVTNVTNFGAFVDVGVHQDGLVHISAISDKFINDPHEIVKAGDVVKVKV 708
Query: 203 IEANAETGRISLTMRESDDIS 223
+E +A+ RI+L+MR D +S
Sbjct: 709 MEVDADRKRIALSMRLQDPVS 729
Score = 40.0 bits (92), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 15/108 (13%)
Query: 243 RSTSKPGQK-RDEMKTTKF------VK----GQDLEGTVKNLTRSGAFISLPEGEEGFLP 291
R KPG+ R E KT +F +K G LEG V N+T GAF+ + ++G +
Sbjct: 623 RELEKPGRDPRPEFKTAEFKDGVETIKDLKIGMTLEGVVTNVTNFGAFVDVGVHQDGLVH 682
Query: 292 TSEESDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDDV 337
S SD F N ++ G V V+V+ + R ++ L+M+ +D V
Sbjct: 683 ISAISDK-FIN-DPHEIVKAGDVVKVKVMEVDADRKRIALSMRLQDPV 728
>gi|110800077|ref|YP_696847.1| RNA-binding protein [Clostridium perfringens ATCC 13124]
gi|110674724|gb|ABG83711.1| RNA-binding protein [Clostridium perfringens ATCC 13124]
Length = 720
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 54/79 (68%)
Query: 140 VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
++ +DL PG G VR++ FGAF+D G DGLVH S+++D+FVK IV VG V+
Sbjct: 640 IEMKDLKPGMILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADSFVKHPLDIVKVGDVVE 699
Query: 200 VRLIEANAETGRISLTMRE 218
VR+++ + + RISL+M++
Sbjct: 700 VRILDVDLKRKRISLSMKK 718
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
Query: 254 EMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQ 313
EMK K G L GTV+N++ GAF+ + ++G + S+ +D + + ++VG
Sbjct: 641 EMKDLK--PGMILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADSFVKHPL--DIVKVGD 696
Query: 314 EVSVRVLRI--SRGQVTLTMKKE 334
V VR+L + R +++L+MKKE
Sbjct: 697 VVEVRILDVDLKRKRISLSMKKE 719
>gi|452820166|gb|EME27212.1| 3S ribosomal protein S1 [Galdieria sulphuraria]
Length = 298
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 99/200 (49%), Gaps = 23/200 (11%)
Query: 155 VRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISL 214
+ + +GAF+D GA GL+HVS +SD+FV+D +V G +KVR++ + E G S+
Sbjct: 111 IAKVTEYGAFVDIGAIKYGLLHVSHMSDSFVRDPSELVKEGDCIKVRVLRVDLERGLFSV 170
Query: 215 TMRESDDISKLQQQKDATASGDKVRTTRRSTSKPG------QKRDEMKTTKFVKGQDLEG 268
TMR S + S ++++ +R P Q + + +TKF K
Sbjct: 171 TMRSSIERKPRTGVTRGRRSKEELKEDKRRLEGPNLSKALLQFAETVDSTKFFKAN---- 226
Query: 269 TVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQ 326
V N+T G F+ + ++G + + + + +Q G+E+ VR+ +I +R
Sbjct: 227 -VLNITDFGVFVDVGGPKDGLIFRPDLTQE----------VQAGEEIVVRIKKIDVARNF 275
Query: 327 VTLTMKKEDDVGSNLQLTQG 346
+T TMK ++ +L L +G
Sbjct: 276 ITCTMKPMEEYEKSLPLIRG 295
>gi|387927965|ref|ZP_10130643.1| Tex-like protein [Bacillus methanolicus PB1]
gi|387587551|gb|EIJ79873.1| Tex-like protein [Bacillus methanolicus PB1]
Length = 729
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 49/77 (63%)
Query: 140 VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
+K EDL PG G VR++ FGAF+D G DGLVH+S+LS FVK IVSVG V
Sbjct: 644 LKLEDLKPGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSRQFVKHPLDIVSVGDVVT 703
Query: 200 VRLIEANAETGRISLTM 216
V + +A GRI+LTM
Sbjct: 704 VWVDNVDAIKGRIALTM 720
Score = 40.0 bits (92), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP ++D +K G +L+GTV+N+ GAF+ + ++G + S+ S
Sbjct: 628 RDPRDELPKPLLRKDILKLEDLKPGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSRQ 687
Query: 299 GFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTM 331
+ + S VG V+V V + +G++ LTM
Sbjct: 688 FVKHPLDIVS--VGDVVTVWVDNVDAIKGRIALTM 720
>gi|365926658|ref|ZP_09449421.1| RNA-binding protein [Lactobacillus mali KCTC 3596 = DSM 20444]
gi|420264924|ref|ZP_14767523.1| RNA-binding protein [Lactobacillus mali KCTC 3596 = DSM 20444]
gi|394429560|gb|EJF01988.1| RNA-binding protein [Lactobacillus mali KCTC 3596 = DSM 20444]
Length = 167
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 72/130 (55%), Gaps = 11/130 (8%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
GA TGKV I FGAF+D G +GLVH+S +SD +VKD+ ++SVG EV V+++ A
Sbjct: 6 GAKVTGKVSGITNFGAFVDLGDRKNGLVHISEVSDGYVKDIHDVLSVGDEVTVKVLSI-A 64
Query: 208 ETGRISLTMRESDDISKLQQQKDAT----------ASGDKVRTTRRSTSKPGQKRDEMKT 257
E G+ISL++R++ S+ + Q T + G V+T S + K+ E K
Sbjct: 65 EDGKISLSIRKAAAPSREKTQASRTNRTEHGNNYHSGGTDVKTHNSSGHRQSYKKTEYKK 124
Query: 258 TKFVKGQDLE 267
+ K D +
Sbjct: 125 SNEAKKTDFD 134
>gi|299472226|emb|CBN77196.1| 30S ribosomal protein S1 [Ectocarpus siliculosus]
Length = 749
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 95/196 (48%), Gaps = 33/196 (16%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
ED++ G + G + ++ +GAF+D G +GLVH+S+L+D FV + V G V+VR+
Sbjct: 116 EDIVVGEEYEGVINNVVTYGAFVDIGTEVNGLVHISQLADEFVANCDDHVKEGDMVRVRV 175
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPG--QKRDEMKT--- 257
+ + E ++ L+MR+ R S+++ G QK +M
Sbjct: 176 LNVDGEARKLVLSMRQK---------------------PRSSSAEQGNVQKYADMLAEDP 214
Query: 258 TKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSV 317
++FV + V+N+ GAF L +G GF+ S+ S G L VGQ V V
Sbjct: 215 SQFVSAK-----VENIVSYGAFFGLEDGCSGFVHISQMSPTGEHVADVSDVLTVGQVVDV 269
Query: 318 RVLRISR--GQVTLTM 331
R+ + G++ +++
Sbjct: 270 RIREVDEKLGRINMSL 285
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 106/209 (50%), Gaps = 18/209 (8%)
Query: 135 SEMPPVKNEDL-----IPGATFT-GKVRSIQPFGAFIDFGAFTDGLVHVSRLSDN--FVK 186
S +PP + D +P + G V SI +GAF+ DG+VH+S+L + V
Sbjct: 383 SMLPPTEEADFGRYTNVPSEEWLEGTVVSIMNYGAFVRLDGDVDGMVHISQLDPHGERVD 442
Query: 187 DVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTS 246
V + V +GQ+V+VR++EA+ + ++ LTMRE + G +
Sbjct: 443 SVYNSVEIGQDVRVRILEADPSSRKLRLTMRE-EGYEGATGGNMGGGGGGGNDRRGTKKA 501
Query: 247 KPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGG 306
K ++ + +++ G+ V ++T GAF+++ + +G L S+ ++D +N+
Sbjct: 502 KSVEQFLNLSPEEWISGR-----VASITHFGAFVAVDDDTDGLLHISQIAEDHVSNV--E 554
Query: 307 SSLQVGQEVSVRVLR--ISRGQVTLTMKK 333
LQ+GQEV VRV+ + ++ L+M++
Sbjct: 555 DHLQIGQEVQVRVIEVDVDNCRLGLSMRE 583
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 95/190 (50%), Gaps = 25/190 (13%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
+L P +G+V SI FGAF+ TDGL+H+S+++++ V +V + +GQEV+VR+I
Sbjct: 509 NLSPEEWISGRVASITHFGAFVAVDDDTDGLLHISQIAEDHVSNVEDHLQIGQEVQVRVI 568
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKG 263
E + + R+ L+MRE +Q A G K + G+ DE
Sbjct: 569 EVDVDNCRLGLSMREP------RQNSPRGARGKK-----DVSVLLGRDPDEF-------- 609
Query: 264 QDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRIS 323
+ G V ++ GAF+++ +G + SE + ++ ++GQEV VR+ I+
Sbjct: 610 --IPGRVVSIVPYGAFVNIEGNIDGLVHISEMAIGRVDSV--EDVCEMGQEVQVRISDIN 665
Query: 324 --RGQVTLTM 331
V L+M
Sbjct: 666 TDNNTVNLSM 675
>gi|168210098|ref|ZP_02635723.1| RNA-binding protein [Clostridium perfringens B str. ATCC 3626]
gi|170711795|gb|EDT23977.1| RNA-binding protein [Clostridium perfringens B str. ATCC 3626]
Length = 720
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 54/79 (68%)
Query: 140 VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
++ +DL PG G VR++ FGAF+D G DGLVH S+++D+FVK IV VG V+
Sbjct: 640 IEMKDLKPGMILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADSFVKHPLDIVKVGDVVE 699
Query: 200 VRLIEANAETGRISLTMRE 218
VR+++ + + RISL+M++
Sbjct: 700 VRILDVDLKRKRISLSMKK 718
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP K ++ G L GTV+N++ GAF+ + ++G + S+ +D
Sbjct: 624 RDPREELPKPIFKSGVIEMKDLKPGMILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADS 683
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKE 334
+ + ++VG V VR+L + R +++L+MKKE
Sbjct: 684 FVKHPL--DIVKVGDVVEVRILDVDLKRKRISLSMKKE 719
>gi|193215725|ref|YP_001996924.1| RNA binding S1 domain-containing protein [Chloroherpeton thalassium
ATCC 35110]
gi|193089202|gb|ACF14477.1| RNA binding S1 domain protein [Chloroherpeton thalassium ATCC
35110]
Length = 758
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 48/78 (61%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL G G V ++ FGAF+D G DGLVHVS L+DN+V D V VGQ V VR+
Sbjct: 641 EDLQIGMKLEGVVTNVTDFGAFVDIGVHQDGLVHVSELADNYVSDPLEAVKVGQIVTVRV 700
Query: 203 IEANAETGRISLTMRESD 220
++ N RISL+MR D
Sbjct: 701 LDVNLSLRRISLSMRSED 718
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 60/102 (58%), Gaps = 15/102 (14%)
Query: 247 KPGQK-RDEMKTTKF---VK-------GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R+E + +F VK G LEG V N+T GAF+ + ++G + SE
Sbjct: 619 KPGRDPREEFRYAEFSDAVKAMEDLQIGMKLEGVVTNVTDFGAFVDIGVHQDGLVHVSEL 678
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVL--RISRGQVTLTMKKED 335
+D+ ++ + +++VGQ V+VRVL +S +++L+M+ ED
Sbjct: 679 ADNYVSDPL--EAVKVGQIVTVRVLDVNLSLRRISLSMRSED 718
>gi|200388687|ref|ZP_03215299.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|199605785|gb|EDZ04330.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
Length = 776
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS FV+D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|168205596|ref|ZP_02631601.1| RNA-binding protein [Clostridium perfringens E str. JGS1987]
gi|169344206|ref|ZP_02865188.1| RNA-binding protein [Clostridium perfringens C str. JGS1495]
gi|169297664|gb|EDS79764.1| RNA-binding protein [Clostridium perfringens C str. JGS1495]
gi|170662934|gb|EDT15617.1| RNA-binding protein [Clostridium perfringens E str. JGS1987]
Length = 720
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 53/79 (67%)
Query: 140 VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
++ +DL PG G VR++ FGAF+D G DGLVH S+++D FVK IV VG V+
Sbjct: 640 IEMKDLKPGMILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADKFVKHPLDIVKVGDVVE 699
Query: 200 VRLIEANAETGRISLTMRE 218
VR+++ + + RISL+M++
Sbjct: 700 VRILDVDLKRKRISLSMKK 718
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
Query: 254 EMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQ 313
EMK K G L GTV+N++ GAF+ + ++G + S+ +D + + ++VG
Sbjct: 641 EMKDLK--PGMILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADKFVKHPL--DIVKVGD 696
Query: 314 EVSVRVLRI--SRGQVTLTMKKE 334
V VR+L + R +++L+MKKE
Sbjct: 697 VVEVRILDVDLKRKRISLSMKKE 719
>gi|148827760|ref|YP_001292513.1| DNA gyrase subunit B [Haemophilus influenzae PittGG]
gi|148719002|gb|ABR00130.1| DNA gyrase subunit B [Haemophilus influenzae PittGG]
Length = 770
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 56/100 (56%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LSD FV+D +V G VKV+++
Sbjct: 647 DLKPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGDIVKVKVL 706
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRR 243
E + RI+LTMR + K + D T S T+R
Sbjct: 707 EVDVPRKRIALTMRLDESAVKNDGKSDRTLSARPRGNTQR 746
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 15/107 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT F +G + LEGTV N+T GAF+ + ++G + S
Sbjct: 624 KPGRDPRGEFKTAVFAEGVEEITDLKPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSL 683
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKKEDDVGSN 340
SD + ++ G V V+VL + R ++ LTM+ ++ N
Sbjct: 684 SDKFVED--PHQVVKTGDIVKVKVLEVDVPRKRIALTMRLDESAVKN 728
>gi|417542229|ref|ZP_12193734.1| Transcription accessory protein, partial [Salmonella enterica
subsp. enterica serovar Wandsworth str. A4-580]
gi|353659134|gb|EHC99118.1| Transcription accessory protein, partial [Salmonella enterica
subsp. enterica serovar Wandsworth str. A4-580]
Length = 410
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS+ FV D ++V G VKV+++
Sbjct: 318 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVDDPHTVVKAGDIVKVKVL 377
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 378 EVDLQRKRIALTMR 391
>gi|334143921|ref|YP_004537077.1| Tex-like protein [Thioalkalimicrobium cyclicum ALM1]
gi|333964832|gb|AEG31598.1| Tex-like protein [Thioalkalimicrobium cyclicum ALM1]
Length = 773
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV D +V GQ VKV ++
Sbjct: 647 DLTPGLVLEGVVTNVTHFGAFVDVGVHQDGLVHISHLSNTFVSDPREVVKAGQIVKVTVL 706
Query: 204 EANAETGRISLTMRES 219
E +A RISL+M+ S
Sbjct: 707 EVDAARKRISLSMKTS 722
>gi|182624039|ref|ZP_02951827.1| RNA-binding protein [Clostridium perfringens D str. JGS1721]
gi|177910932|gb|EDT73286.1| RNA-binding protein [Clostridium perfringens D str. JGS1721]
Length = 720
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 53/79 (67%)
Query: 140 VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
++ +DL PG G VR++ FGAF+D G DGLVH S+++D FVK IV VG V+
Sbjct: 640 IEMKDLKPGMILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADKFVKHPLDIVKVGDVVE 699
Query: 200 VRLIEANAETGRISLTMRE 218
VR+++ + + RISL+M++
Sbjct: 700 VRILDVDLKRKRISLSMKK 718
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
Query: 254 EMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQ 313
EMK K G L GTV+N++ GAF+ + ++G + S+ +D + + ++VG
Sbjct: 641 EMKDLK--PGMILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADKFVKHPL--DIVKVGD 696
Query: 314 EVSVRVLRI--SRGQVTLTMKKE 334
V VR+L + R +++L+MKKE
Sbjct: 697 VVEVRILDVDLKRKRISLSMKKE 719
>gi|392539569|ref|ZP_10286706.1| hypothetical protein Pmarm_15737 [Pseudoalteromonas marina mano4]
Length = 774
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 51/82 (62%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAF+D G DGLVH+S +++ F+ D +V G VKV
Sbjct: 642 KISDLKPGMILEGVVSNVANFGAFVDVGVHQDGLVHISAITNKFISDPREVVKAGDIVKV 701
Query: 201 RLIEANAETGRISLTMRESDDI 222
+++E +A RIS TMR +D+I
Sbjct: 702 KVVEVDASRKRISFTMRLNDEI 723
>gi|261366361|ref|ZP_05979244.1| protein YhgF [Subdoligranulum variabile DSM 15176]
gi|282571964|gb|EFB77499.1| Tex-like protein N-terminal domain protein [Subdoligranulum
variabile DSM 15176]
Length = 719
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 50/75 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG TG VR++ FGAF+D G DGLVH+S++S+ F+K ++ VG VKV++
Sbjct: 643 EDLKPGMELTGTVRNVIDFGAFVDLGVHQDGLVHISQISNRFIKHPREVLKVGDIVKVKV 702
Query: 203 IEANAETGRISLTMR 217
+ + RI+LTM+
Sbjct: 703 LSVDVAKKRIALTMK 717
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R S KP + D M G +L GTV+N+ GAF+ L ++G + S+ S+
Sbjct: 624 RDVRDSLPKPLLRSDVMSLEDLKPGMELTGTVRNVIDFGAFVDLGVHQDGLVHISQISNR 683
Query: 299 GFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMK 332
+ L+VG V V+VL +++ ++ LTMK
Sbjct: 684 FIKHPR--EVLKVGDIVKVKVLSVDVAKKRIALTMK 717
>gi|317494412|ref|ZP_07952826.1| tex protein [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316917662|gb|EFV39007.1| tex protein [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 778
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L+D FV D +V G VKV+++
Sbjct: 646 DLQPGMILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVM 705
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKR 252
E + + RI+LTMR + Q + + G RTT R G R
Sbjct: 706 EVDMQRKRIALTMRLDE-----QPGEGGSRRGSAERTTERQRPANGNAR 749
>gi|445493820|ref|ZP_21460864.1| Tex-like protein [Janthinobacterium sp. HH01]
gi|444789981|gb|ELX11528.1| Tex-like protein [Janthinobacterium sp. HH01]
Length = 782
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 50/77 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL P G V ++ FGAF+D G DGLVH+S LS FVKD ++V GQ VKV+++
Sbjct: 659 DLRPDMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSITFVKDPHTVVKAGQVVKVKVL 718
Query: 204 EANAETGRISLTMRESD 220
E + + RI+LTMR +D
Sbjct: 719 EVDEKRKRIALTMRLTD 735
>gi|365835041|ref|ZP_09376471.1| Tex-like protein [Hafnia alvei ATCC 51873]
gi|364567319|gb|EHM44989.1| Tex-like protein [Hafnia alvei ATCC 51873]
Length = 778
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L+D FV D +V G VKV+++
Sbjct: 646 DLQPGMILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVM 705
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKR 252
E + + RI+LTMR + Q + + G RTT R G R
Sbjct: 706 EVDMQRKRIALTMRLDE-----QPGEGGSRRGSAERTTERQRPANGNAR 749
>gi|119471392|ref|ZP_01613864.1| conserved protein with nucleic acid-binding protein-like domain
(Transcriptional accessory protein) [Alteromonadales
bacterium TW-7]
gi|119445668|gb|EAW26952.1| conserved protein with nucleic acid-binding protein-like domain
(Transcriptional accessory protein) [Alteromonadales
bacterium TW-7]
Length = 774
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 51/82 (62%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAF+D G DGLVH+S +++ F+ D +V G VKV
Sbjct: 642 KISDLKPGMILEGVVSNVANFGAFVDVGVHQDGLVHISAITNKFISDPREVVKAGDIVKV 701
Query: 201 RLIEANAETGRISLTMRESDDI 222
+++E +A RIS TMR +D+I
Sbjct: 702 KVVEVDASRKRISFTMRLNDEI 723
>gi|153950179|ref|YP_001402930.1| hypothetical protein YpsIP31758_3982 [Yersinia pseudotuberculosis
IP 31758]
gi|152961674|gb|ABS49135.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
31758]
Length = 791
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L+D FV D +V G VKV+++
Sbjct: 646 DLTPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVM 705
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASG-DKVRTTRRSTSKP 248
E + + RI+LTMR + + ++ +G ++ R ++P
Sbjct: 706 EVDLQRKRIALTMRLDEQPGETHSRRSNNGTGSERTNNDNRGVNRP 751
>gi|170022431|ref|YP_001718936.1| RNA-binding S1 domain-containing protein [Yersinia
pseudotuberculosis YPIII]
gi|169748965|gb|ACA66483.1| RNA binding S1 domain protein [Yersinia pseudotuberculosis YPIII]
Length = 791
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L+D FV D +V G VKV+++
Sbjct: 646 DLTPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVM 705
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASG-DKVRTTRRSTSKP 248
E + + RI+LTMR + + ++ +G ++ R ++P
Sbjct: 706 EVDLQRKRIALTMRLDEQPGETHSRRSNNGTGSERTNNDNRGVNRP 751
>gi|22127783|ref|NP_671206.1| hypothetical protein y3913 [Yersinia pestis KIM10+]
gi|45439997|ref|NP_991536.1| RNA-binding protein [Yersinia pestis biovar Microtus str. 91001]
gi|108809326|ref|YP_653242.1| hypothetical protein YPA_3335 [Yersinia pestis Antiqua]
gi|108814091|ref|YP_649858.1| hypothetical protein YPN_3931 [Yersinia pestis Nepal516]
gi|145597384|ref|YP_001161459.1| hypothetical protein YPDSF_0061 [Yersinia pestis Pestoides F]
gi|150260816|ref|ZP_01917544.1| predicted transcriptional accessory protein [Yersinia pestis
CA88-4125]
gi|162421540|ref|YP_001608058.1| hypothetical protein YpAngola_A3743 [Yersinia pestis Angola]
gi|165928028|ref|ZP_02223860.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165936122|ref|ZP_02224691.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
str. IP275]
gi|166010602|ref|ZP_02231500.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166213288|ref|ZP_02239323.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167398728|ref|ZP_02304252.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167418783|ref|ZP_02310536.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167425730|ref|ZP_02317483.1| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|167468692|ref|ZP_02333396.1| hypothetical protein YpesF_12509 [Yersinia pestis FV-1]
gi|218927345|ref|YP_002345220.1| hypothetical protein YPO0134 [Yersinia pestis CO92]
gi|229836385|ref|ZP_04456552.1| predicted transcriptional accessory protein [Yersinia pestis
Pestoides A]
gi|229839990|ref|ZP_04460149.1| predicted transcriptional accessory protein [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229842071|ref|ZP_04462226.1| predicted transcriptional accessory protein [Yersinia pestis biovar
Orientalis str. India 195]
gi|229904628|ref|ZP_04519739.1| predicted transcriptional accessory protein [Yersinia pestis
Nepal516]
gi|270488159|ref|ZP_06205233.1| S1 RNA binding domain protein [Yersinia pestis KIM D27]
gi|294502224|ref|YP_003566286.1| hypothetical protein YPZ3_0114 [Yersinia pestis Z176003]
gi|384120707|ref|YP_005503327.1| hypothetical protein YPD4_0115 [Yersinia pestis D106004]
gi|384137885|ref|YP_005520587.1| putative transcriptional accessory protein [Yersinia pestis A1122]
gi|384412766|ref|YP_005622128.1| 30S ribosomal protein S1 [Yersinia pestis biovar Medievalis str.
Harbin 35]
gi|420544561|ref|ZP_15042773.1| protein yhgF [Yersinia pestis PY-01]
gi|420549855|ref|ZP_15047507.1| protein yhgF [Yersinia pestis PY-02]
gi|420555306|ref|ZP_15052360.1| protein yhgF [Yersinia pestis PY-03]
gi|420560959|ref|ZP_15057275.1| protein yhgF [Yersinia pestis PY-04]
gi|420565991|ref|ZP_15061812.1| protein yhgF [Yersinia pestis PY-05]
gi|420571661|ref|ZP_15066966.1| protein yhgF [Yersinia pestis PY-06]
gi|420576989|ref|ZP_15071781.1| protein yhgF [Yersinia pestis PY-07]
gi|420582310|ref|ZP_15076626.1| protein yhgF [Yersinia pestis PY-08]
gi|420587444|ref|ZP_15081268.1| protein yhgF [Yersinia pestis PY-09]
gi|420592754|ref|ZP_15086045.1| protein yhgF [Yersinia pestis PY-10]
gi|420598450|ref|ZP_15091152.1| protein yhgF [Yersinia pestis PY-11]
gi|420603983|ref|ZP_15096075.1| protein yhgF [Yersinia pestis PY-12]
gi|420609328|ref|ZP_15100935.1| protein yhgF [Yersinia pestis PY-13]
gi|420614568|ref|ZP_15105605.1| S1 RNA binding domain protein [Yersinia pestis PY-14]
gi|420620027|ref|ZP_15110364.1| protein yhgF [Yersinia pestis PY-15]
gi|420625077|ref|ZP_15114937.1| protein yhgF [Yersinia pestis PY-16]
gi|420630225|ref|ZP_15119614.1| protein yhgF [Yersinia pestis PY-19]
gi|420635355|ref|ZP_15124200.1| protein yhgF [Yersinia pestis PY-25]
gi|420640963|ref|ZP_15129251.1| protein yhgF [Yersinia pestis PY-29]
gi|420646110|ref|ZP_15133979.1| protein yhgF [Yersinia pestis PY-32]
gi|420651761|ref|ZP_15139038.1| protein yhgF [Yersinia pestis PY-34]
gi|420657180|ref|ZP_15143932.1| protein yhgF [Yersinia pestis PY-36]
gi|420662549|ref|ZP_15148724.1| protein yhgF [Yersinia pestis PY-42]
gi|420667550|ref|ZP_15153241.1| S1 RNA binding domain protein [Yersinia pestis PY-45]
gi|420672848|ref|ZP_15158059.1| protein yhgF [Yersinia pestis PY-46]
gi|420678345|ref|ZP_15163063.1| protein yhgF [Yersinia pestis PY-47]
gi|420683574|ref|ZP_15167764.1| protein yhgF [Yersinia pestis PY-48]
gi|420688732|ref|ZP_15172349.1| protein yhgF [Yersinia pestis PY-52]
gi|420694541|ref|ZP_15177434.1| protein yhgF [Yersinia pestis PY-53]
gi|420699785|ref|ZP_15182033.1| S1 RNA binding domain protein [Yersinia pestis PY-54]
gi|420705991|ref|ZP_15186932.1| protein yhgF [Yersinia pestis PY-55]
gi|420711249|ref|ZP_15191707.1| protein yhgF [Yersinia pestis PY-56]
gi|420716614|ref|ZP_15196468.1| protein yhgF [Yersinia pestis PY-58]
gi|420722266|ref|ZP_15201275.1| protein yhgF [Yersinia pestis PY-59]
gi|420727909|ref|ZP_15206287.1| protein yhgF [Yersinia pestis PY-60]
gi|420733014|ref|ZP_15210884.1| protein yhgF [Yersinia pestis PY-61]
gi|420738482|ref|ZP_15215824.1| protein yhgF [Yersinia pestis PY-63]
gi|420743716|ref|ZP_15220517.1| protein yhgF [Yersinia pestis PY-64]
gi|420749604|ref|ZP_15225451.1| protein yhgF [Yersinia pestis PY-65]
gi|420754633|ref|ZP_15229977.1| protein yhgF [Yersinia pestis PY-66]
gi|420760796|ref|ZP_15234860.1| protein yhgF [Yersinia pestis PY-71]
gi|420765932|ref|ZP_15239511.1| protein yhgF [Yersinia pestis PY-72]
gi|420770968|ref|ZP_15244014.1| protein yhgF [Yersinia pestis PY-76]
gi|420776300|ref|ZP_15248830.1| protein yhgF [Yersinia pestis PY-88]
gi|420781768|ref|ZP_15253631.1| protein yhgF [Yersinia pestis PY-89]
gi|420787227|ref|ZP_15258408.1| S1 RNA binding domain protein [Yersinia pestis PY-90]
gi|420792675|ref|ZP_15263319.1| protein yhgF [Yersinia pestis PY-91]
gi|420797802|ref|ZP_15267921.1| protein yhgF [Yersinia pestis PY-92]
gi|420803197|ref|ZP_15272778.1| protein yhgF [Yersinia pestis PY-93]
gi|420808375|ref|ZP_15277471.1| S1 RNA binding domain protein [Yersinia pestis PY-94]
gi|420814163|ref|ZP_15282641.1| protein yhgF [Yersinia pestis PY-95]
gi|420819295|ref|ZP_15287306.1| protein yhgF [Yersinia pestis PY-96]
gi|420824394|ref|ZP_15291858.1| protein yhgF [Yersinia pestis PY-98]
gi|420830238|ref|ZP_15297141.1| protein yhgF [Yersinia pestis PY-99]
gi|420835024|ref|ZP_15301451.1| protein yhgF [Yersinia pestis PY-100]
gi|420840150|ref|ZP_15306096.1| protein yhgF [Yersinia pestis PY-101]
gi|420845762|ref|ZP_15311178.1| protein yhgF [Yersinia pestis PY-102]
gi|420851083|ref|ZP_15315938.1| protein yhgF [Yersinia pestis PY-103]
gi|420856692|ref|ZP_15320651.1| protein yhgF [Yersinia pestis PY-113]
gi|421761560|ref|ZP_16198360.1| transcriptional accessory protein [Yersinia pestis INS]
gi|21960912|gb|AAM87457.1|AE013996_2 hypothetical protein y3913 [Yersinia pestis KIM10+]
gi|45434852|gb|AAS60413.1| Predicted RNA binding protein, Contains S1 domain [Yersinia pestis
biovar Microtus str. 91001]
gi|108777739|gb|ABG20258.1| hypothetical protein YPN_3931 [Yersinia pestis Nepal516]
gi|108781239|gb|ABG15297.1| hypothetical protein YPA_3335 [Yersinia pestis Antiqua]
gi|115345956|emb|CAL18820.1| conserved hypothetical protein [Yersinia pestis CO92]
gi|145209080|gb|ABP38487.1| hypothetical protein YPDSF_0061 [Yersinia pestis Pestoides F]
gi|149290224|gb|EDM40301.1| predicted transcriptional accessory protein [Yersinia pestis
CA88-4125]
gi|162354355|gb|ABX88303.1| conserved hypothetical protein [Yersinia pestis Angola]
gi|165915736|gb|EDR34344.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
str. IP275]
gi|165919977|gb|EDR37278.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165990692|gb|EDR42993.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166205586|gb|EDR50066.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
B42003004]
gi|166962777|gb|EDR58798.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167051232|gb|EDR62640.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167055420|gb|EDR65214.1| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|229678746|gb|EEO74851.1| predicted transcriptional accessory protein [Yersinia pestis
Nepal516]
gi|229690381|gb|EEO82435.1| predicted transcriptional accessory protein [Yersinia pestis biovar
Orientalis str. India 195]
gi|229696356|gb|EEO86403.1| predicted transcriptional accessory protein [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229706453|gb|EEO92460.1| predicted transcriptional accessory protein [Yersinia pestis
Pestoides A]
gi|262360303|gb|ACY57024.1| hypothetical protein YPD4_0115 [Yersinia pestis D106004]
gi|270336663|gb|EFA47440.1| S1 RNA binding domain protein [Yersinia pestis KIM D27]
gi|294352683|gb|ADE63024.1| hypothetical protein YPZ3_0114 [Yersinia pestis Z176003]
gi|320013270|gb|ADV96841.1| 30S ribosomal protein S1 [Yersinia pestis biovar Medievalis str.
Harbin 35]
gi|342853014|gb|AEL71567.1| putative transcriptional accessory protein [Yersinia pestis A1122]
gi|391433332|gb|EIQ94674.1| protein yhgF [Yersinia pestis PY-01]
gi|391434151|gb|EIQ95377.1| protein yhgF [Yersinia pestis PY-02]
gi|391437121|gb|EIQ98016.1| protein yhgF [Yersinia pestis PY-03]
gi|391449363|gb|EIR09093.1| protein yhgF [Yersinia pestis PY-04]
gi|391449907|gb|EIR09589.1| protein yhgF [Yersinia pestis PY-05]
gi|391452041|gb|EIR11493.1| protein yhgF [Yersinia pestis PY-06]
gi|391465350|gb|EIR23555.1| protein yhgF [Yersinia pestis PY-07]
gi|391466857|gb|EIR24893.1| protein yhgF [Yersinia pestis PY-08]
gi|391468994|gb|EIR26819.1| protein yhgF [Yersinia pestis PY-09]
gi|391482815|gb|EIR39233.1| protein yhgF [Yersinia pestis PY-10]
gi|391483271|gb|EIR39649.1| protein yhgF [Yersinia pestis PY-12]
gi|391483756|gb|EIR40092.1| protein yhgF [Yersinia pestis PY-11]
gi|391497646|gb|EIR52488.1| protein yhgF [Yersinia pestis PY-13]
gi|391498487|gb|EIR53253.1| protein yhgF [Yersinia pestis PY-15]
gi|391501962|gb|EIR56316.1| S1 RNA binding domain protein [Yersinia pestis PY-14]
gi|391513116|gb|EIR66370.1| protein yhgF [Yersinia pestis PY-16]
gi|391514728|gb|EIR67809.1| protein yhgF [Yersinia pestis PY-19]
gi|391516293|gb|EIR69204.1| protein yhgF [Yersinia pestis PY-25]
gi|391528725|gb|EIR80516.1| protein yhgF [Yersinia pestis PY-29]
gi|391531671|gb|EIR83147.1| protein yhgF [Yersinia pestis PY-34]
gi|391532920|gb|EIR84260.1| protein yhgF [Yersinia pestis PY-32]
gi|391545800|gb|EIR95846.1| protein yhgF [Yersinia pestis PY-36]
gi|391547638|gb|EIR97520.1| protein yhgF [Yersinia pestis PY-42]
gi|391548196|gb|EIR98020.1| S1 RNA binding domain protein [Yersinia pestis PY-45]
gi|391561886|gb|EIS10371.1| protein yhgF [Yersinia pestis PY-46]
gi|391562972|gb|EIS11332.1| protein yhgF [Yersinia pestis PY-47]
gi|391565148|gb|EIS13292.1| protein yhgF [Yersinia pestis PY-48]
gi|391577273|gb|EIS23723.1| protein yhgF [Yersinia pestis PY-52]
gi|391578034|gb|EIS24359.1| protein yhgF [Yersinia pestis PY-53]
gi|391589217|gb|EIS34140.1| protein yhgF [Yersinia pestis PY-55]
gi|391592894|gb|EIS37266.1| S1 RNA binding domain protein [Yersinia pestis PY-54]
gi|391593337|gb|EIS37654.1| protein yhgF [Yersinia pestis PY-56]
gi|391606160|gb|EIS48923.1| protein yhgF [Yersinia pestis PY-60]
gi|391608099|gb|EIS50624.1| protein yhgF [Yersinia pestis PY-58]
gi|391608852|gb|EIS51304.1| protein yhgF [Yersinia pestis PY-59]
gi|391620871|gb|EIS61986.1| protein yhgF [Yersinia pestis PY-61]
gi|391621690|gb|EIS62705.1| protein yhgF [Yersinia pestis PY-63]
gi|391630141|gb|EIS69955.1| protein yhgF [Yersinia pestis PY-64]
gi|391632191|gb|EIS71745.1| protein yhgF [Yersinia pestis PY-65]
gi|391643557|gb|EIS81717.1| protein yhgF [Yersinia pestis PY-71]
gi|391646272|gb|EIS84043.1| protein yhgF [Yersinia pestis PY-72]
gi|391649851|gb|EIS87200.1| protein yhgF [Yersinia pestis PY-66]
gi|391656118|gb|EIS92788.1| protein yhgF [Yersinia pestis PY-76]
gi|391663121|gb|EIS98996.1| protein yhgF [Yersinia pestis PY-88]
gi|391668210|gb|EIT03467.1| protein yhgF [Yersinia pestis PY-89]
gi|391669676|gb|EIT04789.1| S1 RNA binding domain protein [Yersinia pestis PY-90]
gi|391673162|gb|EIT07912.1| protein yhgF [Yersinia pestis PY-91]
gi|391687280|gb|EIT20611.1| protein yhgF [Yersinia pestis PY-93]
gi|391688932|gb|EIT22110.1| protein yhgF [Yersinia pestis PY-92]
gi|391690214|gb|EIT23265.1| S1 RNA binding domain protein [Yersinia pestis PY-94]
gi|391701414|gb|EIT33421.1| protein yhgF [Yersinia pestis PY-95]
gi|391704566|gb|EIT36215.1| protein yhgF [Yersinia pestis PY-96]
gi|391705169|gb|EIT36761.1| protein yhgF [Yersinia pestis PY-98]
gi|391716100|gb|EIT46581.1| protein yhgF [Yersinia pestis PY-99]
gi|391720851|gb|EIT50844.1| protein yhgF [Yersinia pestis PY-100]
gi|391721350|gb|EIT51293.1| protein yhgF [Yersinia pestis PY-101]
gi|391731794|gb|EIT60448.1| protein yhgF [Yersinia pestis PY-102]
gi|391734574|gb|EIT62826.1| protein yhgF [Yersinia pestis PY-103]
gi|391737587|gb|EIT65460.1| protein yhgF [Yersinia pestis PY-113]
gi|411177882|gb|EKS47894.1| transcriptional accessory protein [Yersinia pestis INS]
Length = 791
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L+D FV D +V G VKV+++
Sbjct: 646 DLTPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVM 705
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASG-DKVRTTRRSTSKP 248
E + + RI+LTMR + + ++ +G ++ R ++P
Sbjct: 706 EVDLQRKRIALTMRLDEQPGETHSRRSNNGTGSERTNNDNRGVNRP 751
Score = 38.9 bits (89), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 15/109 (13%)
Query: 243 RSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLP 291
R KPG+ R E KT F +G + LEG V N+T GAF+ + ++G +
Sbjct: 619 RELEKPGRDPRSEFKTATFAEGVETLNDLTPGMILEGAVTNVTNFGAFVDIGVHQDGLVH 678
Query: 292 TSEESDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDDVG 338
S +D + ++ G V V+V+ + R ++ LTM+ ++ G
Sbjct: 679 ISSLADKFVDD--PHKVVKAGDIVKVKVMEVDLQRKRIALTMRLDEQPG 725
>gi|359449343|ref|ZP_09238839.1| protein yhgF [Pseudoalteromonas sp. BSi20480]
gi|358044883|dbj|GAA75088.1| protein yhgF [Pseudoalteromonas sp. BSi20480]
Length = 774
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 51/82 (62%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAF+D G DGLVH+S +++ F+ D +V G VKV
Sbjct: 642 KISDLKPGMILEGVVSNVANFGAFVDVGVHQDGLVHISAITNKFISDPREVVKAGDIVKV 701
Query: 201 RLIEANAETGRISLTMRESDDI 222
+++E +A RIS TMR +D+I
Sbjct: 702 KVVEVDASRKRISFTMRLNDEI 723
>gi|168215796|ref|ZP_02641421.1| RNA-binding protein [Clostridium perfringens NCTC 8239]
gi|182382370|gb|EDT79849.1| RNA-binding protein [Clostridium perfringens NCTC 8239]
Length = 720
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 53/79 (67%)
Query: 140 VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
++ +DL PG G VR++ FGAF+D G DGLVH S+++D FVK IV VG V+
Sbjct: 640 IEMKDLKPGMILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADRFVKHPLDIVKVGDVVE 699
Query: 200 VRLIEANAETGRISLTMRE 218
VR+++ + + RISL+M++
Sbjct: 700 VRILDVDLKRKRISLSMKK 718
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
Query: 254 EMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQ 313
EMK K G L GTV+N++ GAF+ + ++G + S+ +D + + ++VG
Sbjct: 641 EMKDLK--PGMILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADRFVKHPL--DIVKVGD 696
Query: 314 EVSVRVLRI--SRGQVTLTMKKE 334
V VR+L + R +++L+MKKE
Sbjct: 697 VVEVRILDVDLKRKRISLSMKKE 719
>gi|51598056|ref|YP_072247.1| hypothetical protein YPTB3766 [Yersinia pseudotuberculosis IP
32953]
gi|186897256|ref|YP_001874368.1| RNA-binding S1 domain-containing protein [Yersinia
pseudotuberculosis PB1/+]
gi|51591338|emb|CAH23004.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
32953]
gi|186700282|gb|ACC90911.1| RNA binding S1 domain protein [Yersinia pseudotuberculosis PB1/+]
Length = 791
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L+D FV D +V G VKV+++
Sbjct: 646 DLTPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVM 705
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASG-DKVRTTRRSTSKP 248
E + + RI+LTMR + + ++ +G ++ R ++P
Sbjct: 706 EVDLQRKRIALTMRLDEQPGETHSRRSNNGTGSERTNNDNRGVNRP 751
>gi|422346835|ref|ZP_16427749.1| competence protein ComEA helix-hairpin-helix repeat region
[Clostridium perfringens WAL-14572]
gi|373225668|gb|EHP47999.1| competence protein ComEA helix-hairpin-helix repeat region
[Clostridium perfringens WAL-14572]
Length = 720
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 53/79 (67%)
Query: 140 VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
++ +DL PG G VR++ FGAF+D G DGLVH S+++D FVK IV VG V+
Sbjct: 640 IEMKDLKPGMILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADRFVKHPLDIVKVGDVVE 699
Query: 200 VRLIEANAETGRISLTMRE 218
VR+++ + + RISL+M++
Sbjct: 700 VRILDVDLKRKRISLSMKK 718
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
Query: 254 EMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQ 313
EMK K G L GTV+N++ GAF+ + ++G + S+ +D + + ++VG
Sbjct: 641 EMKDLK--PGMILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADRFVKHPL--DIVKVGD 696
Query: 314 EVSVRVLRI--SRGQVTLTMKKE 334
V VR+L + R +++L+MKKE
Sbjct: 697 VVEVRILDVDLKRKRISLSMKKE 719
>gi|345429359|ref|YP_004822477.1| transcriptional accessory protein [Haemophilus parainfluenzae T3T1]
gi|301155420|emb|CBW14886.1| predicted transcriptional accessory protein [Haemophilus
parainfluenzae T3T1]
Length = 770
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 53/92 (57%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LSD FV+D +V G VKV+++
Sbjct: 647 DLKPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGDIVKVKVL 706
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASG 235
E + RI+LTMR + K + D T S
Sbjct: 707 EVDVPRKRIALTMRLDESAVKNDGKSDRTLSA 738
Score = 40.4 bits (93), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 15/111 (13%)
Query: 243 RSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLP 291
+ KPG+ R E KT F +G + LEGTV N+T GAF+ + ++G +
Sbjct: 620 KELEKPGRDPRGEFKTAVFAEGVEEITDLKPGMILEGTVTNVTNFGAFVDIGVHQDGLVH 679
Query: 292 TSEESDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKKEDDVGSN 340
S SD + ++ G V V+VL + R ++ LTM+ ++ N
Sbjct: 680 ISSLSDKFVED--PHQVVKTGDIVKVKVLEVDVPRKRIALTMRLDESAVKN 728
>gi|325576610|ref|ZP_08147328.1| YhgF like protein [Haemophilus parainfluenzae ATCC 33392]
gi|325161173|gb|EGC73288.1| YhgF like protein [Haemophilus parainfluenzae ATCC 33392]
Length = 772
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 53/92 (57%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LSD FV+D +V G VKV+++
Sbjct: 649 DLKPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGDIVKVKVL 708
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASG 235
E + RI+LTMR + K + D T S
Sbjct: 709 EVDVPRKRIALTMRLDESAVKNDGKSDRTLSA 740
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 15/107 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT F +G + LEGTV N+T GAF+ + ++G + S
Sbjct: 626 KPGRDPRGEFKTAVFAEGVEEITDLKPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSL 685
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKKEDDVGSN 340
SD + ++ G V V+VL + R ++ LTM+ ++ N
Sbjct: 686 SDKFVED--PHQVVKTGDIVKVKVLEVDVPRKRIALTMRLDESAVKN 730
>gi|269103902|ref|ZP_06156599.1| transcription accessory protein [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268163800|gb|EEZ42296.1| transcription accessory protein [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 776
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 51/79 (64%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DLIPG G + ++ FGAF+D G DGL+H+S LSD FV D +V G VKV++
Sbjct: 646 KDLIPGMILEGVITNVTNFGAFVDVGVHQDGLIHISALSDKFVSDPREVVKAGDIVKVKV 705
Query: 203 IEANAETGRISLTMRESDD 221
+E + + RI ++MR +D+
Sbjct: 706 MEVDLQRKRIGMSMRLNDE 724
>gi|389839262|ref|YP_006341346.1| protein YhgF [Cronobacter sakazakii ES15]
gi|387849738|gb|AFJ97835.1| protein YhgF [Cronobacter sakazakii ES15]
Length = 775
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LSD FV+D ++V G VKV+++
Sbjct: 647 DLQPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + RI+LTMR
Sbjct: 707 EVDLPRKRIALTMR 720
Score = 40.8 bits (94), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 15/105 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT +F +G + LEG V N+T GAF+ + ++G + S
Sbjct: 624 KPGRDPRPEFKTAQFAEGVETMNDLQPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSL 683
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKKEDDVG 338
SD + + ++ G V V+VL + R ++ LTM+ ++ G
Sbjct: 684 SDKFVED--PHTVVKAGDIVKVKVLEVDLPRKRIALTMRLDEQPG 726
>gi|156936431|ref|YP_001440347.1| hypothetical protein ESA_04332 [Cronobacter sakazakii ATCC BAA-894]
gi|156534685|gb|ABU79511.1| hypothetical protein ESA_04332 [Cronobacter sakazakii ATCC BAA-894]
Length = 775
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LSD FV+D ++V G VKV+++
Sbjct: 647 DLQPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + RI+LTMR
Sbjct: 707 EVDLPRKRIALTMR 720
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 15/105 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT +F +G + LEG V N+T GAF+ + ++G + S
Sbjct: 624 KPGRDPRPEFKTAQFAEGVETMNDLQPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSL 683
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKKEDDVG 338
SD + + ++ G V V+VL + R ++ LTM+ ++ G
Sbjct: 684 SDKFVED--PHTVVKAGDIVKVKVLEVDLPRKRIALTMRLDEQPG 726
>gi|187933135|ref|YP_001884732.1| protein tex [Clostridium botulinum B str. Eklund 17B]
gi|187721288|gb|ACD22509.1| tex domain protein [Clostridium botulinum B str. Eklund 17B]
Length = 723
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 57/94 (60%), Gaps = 7/94 (7%)
Query: 134 KSEMPP-------VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVK 186
+ EMP ++ +DL PG G VR++ FGAF+D G DGLVH S++++ FVK
Sbjct: 627 RDEMPTPILKTGIIELKDLKPGMILNGTVRNVSDFGAFVDIGVHQDGLVHKSQMANRFVK 686
Query: 187 DVGSIVSVGQEVKVRLIEANAETGRISLTMRESD 220
IV VG VKV ++E + + RISL+M++ D
Sbjct: 687 HPLDIVKVGDIVKVSILEVDQKRKRISLSMKDVD 720
>gi|449310485|ref|YP_007442841.1| transcriptional accessory protein [Cronobacter sakazakii SP291]
gi|449100518|gb|AGE88552.1| transcriptional accessory protein [Cronobacter sakazakii SP291]
Length = 775
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LSD FV+D ++V G VKV+++
Sbjct: 647 DLQPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + RI+LTMR
Sbjct: 707 EVDLPRKRIALTMR 720
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 15/105 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT +F +G + LEG V N+T GAF+ + ++G + S
Sbjct: 624 KPGRDPRPEFKTAQFAEGVETMNDLQPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSL 683
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKKEDDVG 338
SD + + ++ G V V+VL + R ++ LTM+ ++ G
Sbjct: 684 SDKFVED--PHTVVKAGDIVKVKVLEVDLPRKRIALTMRLDEQPG 726
>gi|18311150|ref|NP_563084.1| hypothetical protein CPE2168 [Clostridium perfringens str. 13]
gi|18145833|dbj|BAB81874.1| conserved hypothetical protein [Clostridium perfringens str. 13]
Length = 720
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 53/79 (67%)
Query: 140 VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
++ +DL PG G VR++ FGAF+D G DGLVH S+++D FVK IV VG V+
Sbjct: 640 IEMKDLKPGMILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADKFVKHPLDIVKVGDIVE 699
Query: 200 VRLIEANAETGRISLTMRE 218
VR+++ + + RISL+M++
Sbjct: 700 VRILDVDLKRKRISLSMKK 718
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
Query: 254 EMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQ 313
EMK K G L GTV+N++ GAF+ + ++G + S+ +D + + ++VG
Sbjct: 641 EMKDLK--PGMILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADKFVKHPL--DIVKVGD 696
Query: 314 EVSVRVLRI--SRGQVTLTMKKE 334
V VR+L + R +++L+MKKE
Sbjct: 697 IVEVRILDVDLKRKRISLSMKKE 719
>gi|444354335|ref|YP_007390479.1| Transcription accessory protein (S1 RNA-binding domain)
[Enterobacter aerogenes EA1509E]
gi|443905165|emb|CCG32939.1| Transcription accessory protein (S1 RNA-binding domain)
[Enterobacter aerogenes EA1509E]
Length = 776
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVM 706
Query: 204 EANAETGRISLTMR 217
E + RI+LTMR
Sbjct: 707 EVDLPRKRIALTMR 720
>gi|431929793|ref|YP_007242839.1| transcriptional accessory protein [Thioflavicoccus mobilis 8321]
gi|431828096|gb|AGA89209.1| transcriptional accessory protein [Thioflavicoccus mobilis 8321]
Length = 792
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 49/77 (63%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L+D FVKD IV G V+V+++
Sbjct: 655 DLKPGMVLEGTVTNVTNFGAFVDVGVHQDGLVHISALADRFVKDPHEIVKSGDLVRVKVL 714
Query: 204 EANAETGRISLTMRESD 220
E + RI+LTMR +D
Sbjct: 715 EVDEPRRRIALTMRLTD 731
Score = 39.3 bits (90), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 15/102 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT +F++G + LEGTV N+T GAF+ + ++G + S
Sbjct: 632 KPGRDPRPEFKTAQFLEGVETLADLKPGMVLEGTVTNVTNFGAFVDVGVHQDGLVHISAL 691
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKKED 335
+D + ++ G V V+VL + R ++ LTM+ D
Sbjct: 692 ADRFVKDPH--EIVKSGDLVRVKVLEVDEPRRRIALTMRLTD 731
>gi|283835802|ref|ZP_06355543.1| hypothetical protein CIT292_10196 [Citrobacter youngae ATCC 29220]
gi|291067967|gb|EFE06076.1| protein YhgF [Citrobacter youngae ATCC 29220]
Length = 777
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + RI+LTMR
Sbjct: 707 EVDLPRKRIALTMR 720
>gi|429121757|ref|ZP_19182367.1| Transcription accessory protein (S1 RNA-binding domain)
[Cronobacter sakazakii 680]
gi|426323751|emb|CCK13104.1| Transcription accessory protein (S1 RNA-binding domain)
[Cronobacter sakazakii 680]
Length = 775
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LSD FV+D ++V G VKV+++
Sbjct: 647 DLQPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + RI+LTMR
Sbjct: 707 EVDLPRKRIALTMR 720
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 15/105 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT +F +G + LEG V N+T GAF+ + ++G + S
Sbjct: 624 KPGRDPRPEFKTAQFAEGVETMNDLQPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSL 683
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKKEDDVG 338
SD + + ++ G V V+VL + R ++ LTM+ ++ G
Sbjct: 684 SDKFVED--PHTVVKAGDIVKVKVLEVDLPRKRIALTMRLDEQPG 726
>gi|24376102|ref|NP_720145.1| transcriptional accessory protein Tex [Shewanella oneidensis MR-1]
gi|24351131|gb|AAN57589.1| transcriptional accessory protein Tex [Shewanella oneidensis MR-1]
Length = 784
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 6/110 (5%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL P G V ++ FGAF+D G DGLVH+S L+D F+ D ++V G VKV++
Sbjct: 647 KDLKPEMILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFITDPHTVVKAGDVVKVKV 706
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKR 252
+E + E RI L+MR + I + + Q A A G + +KP Q+
Sbjct: 707 MEVDVERRRIGLSMRLDEAIDQSKTQTRAPAQG------KHQANKPNQQH 750
>gi|336247555|ref|YP_004591265.1| putative transcriptional accessory protein [Enterobacter aerogenes
KCTC 2190]
gi|334733611|gb|AEG95986.1| putative transcriptional accessory protein [Enterobacter aerogenes
KCTC 2190]
Length = 776
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVM 706
Query: 204 EANAETGRISLTMR 217
E + RI+LTMR
Sbjct: 707 EVDLPRKRIALTMR 720
>gi|441505817|ref|ZP_20987797.1| Transcription accessory protein [Photobacterium sp. AK15]
gi|441426547|gb|ELR64029.1| Transcription accessory protein [Photobacterium sp. AK15]
Length = 775
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 51/79 (64%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL+PG G + ++ FGAF+D G DGLVH+S LSD FV D +V G VKV++
Sbjct: 646 KDLVPGMILEGVITNVTNFGAFVDVGVHQDGLVHISALSDKFVSDPREVVKAGDIVKVKV 705
Query: 203 IEANAETGRISLTMRESDD 221
+E + + RI ++MR +D+
Sbjct: 706 MEVDLQRKRIGMSMRLNDE 724
>gi|384124589|ref|YP_005507203.1| hypothetical protein YPD8_0120, partial [Yersinia pestis D182038]
gi|262364253|gb|ACY60810.1| hypothetical protein YPD8_0120 [Yersinia pestis D182038]
Length = 506
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L+D FV D +V G VKV+++
Sbjct: 361 DLTPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVM 420
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASG-DKVRTTRRSTSKP 248
E + + RI+LTMR + + ++ +G ++ R ++P
Sbjct: 421 EVDLQRKRIALTMRLDEQPGETHSRRSNNGTGSERTNNDNRGVNRP 466
Score = 38.9 bits (89), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 15/109 (13%)
Query: 243 RSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLP 291
R KPG+ R E KT F +G + LEG V N+T GAF+ + ++G +
Sbjct: 334 RELEKPGRDPRSEFKTATFAEGVETLNDLTPGMILEGAVTNVTNFGAFVDIGVHQDGLVH 393
Query: 292 TSEESDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDDVG 338
S +D + ++ G V V+V+ + R ++ LTM+ ++ G
Sbjct: 394 ISSLADKFVDD--PHKVVKAGDIVKVKVMEVDLQRKRIALTMRLDEQPG 440
>gi|260774748|ref|ZP_05883651.1| transcription accessory protein [Vibrio coralliilyticus ATCC
BAA-450]
gi|260609310|gb|EEX35462.1| transcription accessory protein [Vibrio coralliilyticus ATCC
BAA-450]
Length = 775
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 63/111 (56%), Gaps = 2/111 (1%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L+D FV D +V G VKV+++
Sbjct: 647 DLEPGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAGDIVKVKVM 706
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDE 254
E + + RI L+MR +D+ Q + +S + + + +K GQ+R E
Sbjct: 707 EVDIQRKRIGLSMRLNDEPG--QDNRSQRSSAPRGQQRQSQGNKGGQRRRE 755
>gi|429106471|ref|ZP_19168340.1| Transcription accessory protein (S1 RNA-binding domain)
[Cronobacter malonaticus 681]
gi|426293194|emb|CCJ94453.1| Transcription accessory protein (S1 RNA-binding domain)
[Cronobacter malonaticus 681]
Length = 775
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LSD FV+D ++V G VKV+++
Sbjct: 647 DLQPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + RI+LTMR
Sbjct: 707 EVDLPRKRIALTMR 720
Score = 40.4 bits (93), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 15/105 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT +F +G + LEG V N+T GAF+ + ++G + S
Sbjct: 624 KPGRDPRPEFKTAQFAEGVETMNDLQPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSL 683
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKKEDDVG 338
SD + + ++ G V V+VL + R ++ LTM+ ++ G
Sbjct: 684 SDKFVED--PHTVVKAGDIVKVKVLEVDLPRKRIALTMRLDEQPG 726
>gi|182413325|ref|YP_001818391.1| RNA-binding S1 domain-containing protein [Opitutus terrae PB90-1]
gi|177840539|gb|ACB74791.1| RNA binding S1 domain protein [Opitutus terrae PB90-1]
Length = 794
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 52/80 (65%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S+L+D FVKD ++V Q+V V +
Sbjct: 660 KDLKPGMKLPGIVTNVTAFGAFVDIGVHQDGLVHISQLADTFVKDAATVVKPQQKVTVTV 719
Query: 203 IEANAETGRISLTMRESDDI 222
+E + RI+L+MR + +I
Sbjct: 720 VEVDLARNRIALSMRSNPEI 739
>gi|415886973|ref|ZP_11548716.1| general stress protein 13 [Bacillus methanolicus MGA3]
gi|387585624|gb|EIJ77949.1| general stress protein 13 [Bacillus methanolicus MGA3]
Length = 134
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 51/76 (67%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G+ TGKV IQP+GAFI T GLVH+S ++ +VKDV + VG EVKV+++ +
Sbjct: 8 GSILTGKVTGIQPYGAFIALDENTQGLVHISEITHGYVKDVNEHLKVGDEVKVKVLSVDE 67
Query: 208 ETGRISLTMRESDDIS 223
E G+I L++R +D+ S
Sbjct: 68 EAGKIGLSIRATDEAS 83
>gi|417843837|ref|ZP_12489902.1| putative tex-like protein [Haemophilus haemolyticus M21127]
gi|341948300|gb|EGT74930.1| putative tex-like protein [Haemophilus haemolyticus M21127]
Length = 770
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 53/91 (58%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LSD FV+D +V G VKV+++
Sbjct: 647 DLKPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGDIVKVKVL 706
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATAS 234
E + RI+LTMR + K + D T S
Sbjct: 707 EVDVPRKRIALTMRLDESAVKNDGKSDRTLS 737
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 15/107 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT F +G + LEGTV N+T GAF+ + ++G + S
Sbjct: 624 KPGRDPRGEFKTAVFAEGVEEITDLKPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSL 683
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKKEDDVGSN 340
SD + ++ G V V+VL + R ++ LTM+ ++ N
Sbjct: 684 SDKFVED--PHQVVKTGDIVKVKVLEVDVPRKRIALTMRLDESAVKN 728
>gi|260599708|ref|YP_003212279.1| protein YhgF [Cronobacter turicensis z3032]
gi|260218885|emb|CBA34240.1| Protein yhgF [Cronobacter turicensis z3032]
Length = 787
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LSD FV+D ++V G VKV+++
Sbjct: 660 DLQPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHTVVKAGDIVKVKVL 719
Query: 204 EANAETGRISLTMR 217
E + RI+LTMR
Sbjct: 720 EVDLPRKRIALTMR 733
Score = 40.0 bits (92), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 15/105 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT +F G + LEG V N+T GAF+ + ++G + S
Sbjct: 637 KPGRDPRPEFKTAQFADGVETMNDLQPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSL 696
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKKEDDVG 338
SD + + ++ G V V+VL + R ++ LTM+ ++ G
Sbjct: 697 SDKFVED--PHTVVKAGDIVKVKVLEVDLPRKRIALTMRLDEQPG 739
>gi|238792873|ref|ZP_04636503.1| hypothetical protein yinte0001_35270 [Yersinia intermedia ATCC
29909]
gi|238727727|gb|EEQ19251.1| hypothetical protein yinte0001_35270 [Yersinia intermedia ATCC
29909]
Length = 792
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 47/74 (63%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L+D FV D +V G VKV+++
Sbjct: 646 DLTPGMILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVM 705
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 706 EVDLQRKRIALTMR 719
Score = 38.9 bits (89), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 15/109 (13%)
Query: 243 RSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLP 291
R KPG+ R E KT F +G + LEG+V N+T GAF+ + ++G +
Sbjct: 619 RELEKPGRDPRPEFKTATFAEGVETLNDLTPGMILEGSVTNVTNFGAFVDIGVHQDGLVH 678
Query: 292 TSEESDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDDVG 338
S +D + ++ G V V+V+ + R ++ LTM+ ++ G
Sbjct: 679 ISSLADKFVDD--PHKVVKAGDIVKVKVMEVDLQRKRIALTMRLDEQPG 725
>gi|238783100|ref|ZP_04627126.1| hypothetical protein yberc0001_1830 [Yersinia bercovieri ATCC
43970]
gi|238715896|gb|EEQ07882.1| hypothetical protein yberc0001_1830 [Yersinia bercovieri ATCC
43970]
Length = 788
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 47/74 (63%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L+D FV D +V G VKV+++
Sbjct: 646 DLTPGMILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVM 705
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 706 EVDLQRKRIALTMR 719
Score = 38.9 bits (89), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 15/109 (13%)
Query: 243 RSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLP 291
R KPG+ R E KT F +G + LEG+V N+T GAF+ + ++G +
Sbjct: 619 RELEKPGRDPRPEFKTATFAEGVETMNDLTPGMILEGSVTNVTNFGAFVDIGVHQDGLVH 678
Query: 292 TSEESDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDDVG 338
S +D + ++ G V V+V+ + R ++ LTM+ ++ G
Sbjct: 679 ISSLADKFVDD--PHKVVKAGDIVKVKVMEVDLQRKRIALTMRLDEQPG 725
>gi|451947773|ref|YP_007468368.1| transcriptional accessory protein [Desulfocapsa sulfexigens DSM
10523]
gi|451907121|gb|AGF78715.1| transcriptional accessory protein [Desulfocapsa sulfexigens DSM
10523]
Length = 708
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 51/76 (67%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DLI G V ++ FGAF+D G DGL+H+S+L+D FV+D +V GQ++ VR+
Sbjct: 632 DDLIAEMKLPGIVTNVTRFGAFVDIGVHQDGLIHISQLADRFVRDPAEVVKAGQQLTVRV 691
Query: 203 IEANAETGRISLTMRE 218
+E + E RI+L++RE
Sbjct: 692 LEVDKERRRIALSLRE 707
>gi|443320653|ref|ZP_21049740.1| transcriptional accessory protein [Gloeocapsa sp. PCC 73106]
gi|442789616|gb|ELR99262.1| transcriptional accessory protein [Gloeocapsa sp. PCC 73106]
Length = 711
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 51/76 (67%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+D+ G TG V ++ FGAF+D G DGLVH+S L+D FV+D +V VGQ VKV++
Sbjct: 636 QDVEAGMELTGVVANVVNFGAFVDIGVHQDGLVHISELADYFVRDPQEVVKVGQIVKVKV 695
Query: 203 IEANAETGRISLTMRE 218
+E N RISL++++
Sbjct: 696 LEVNLVLKRISLSLKQ 711
>gi|419838711|ref|ZP_14362131.1| Tex-like protein N-terminal domain protein [Haemophilus
haemolyticus HK386]
gi|386909939|gb|EIJ74601.1| Tex-like protein N-terminal domain protein [Haemophilus
haemolyticus HK386]
Length = 770
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 56/100 (56%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LSD FV+D +V G VKV+++
Sbjct: 647 DLKPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGDIVKVKVL 706
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRR 243
E + RI+LTMR + K + D T S T+R
Sbjct: 707 EVDVPRKRIALTMRLDESAVKNDGKSDRTLSARLRGNTQR 746
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 15/107 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT F +G + LEGTV N+T GAF+ + ++G + S
Sbjct: 624 KPGRDPRGEFKTAVFAEGVEEITDLKPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSL 683
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKKEDDVGSN 340
SD + ++ G V V+VL + R ++ LTM+ ++ N
Sbjct: 684 SDKFVED--PHQVVKTGDIVKVKVLEVDVPRKRIALTMRLDESAVKN 728
>gi|422875082|ref|ZP_16921567.1| hypothetical protein HA1_12631 [Clostridium perfringens F262]
gi|380304077|gb|EIA16370.1| hypothetical protein HA1_12631 [Clostridium perfringens F262]
Length = 720
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 53/79 (67%)
Query: 140 VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
++ +DL PG G VR++ FGAF+D G DGLVH S+++D FVK IV VG V+
Sbjct: 640 IEMKDLKPGMILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADKFVKHPLDIVKVGDIVE 699
Query: 200 VRLIEANAETGRISLTMRE 218
VR+++ + + RISL+M++
Sbjct: 700 VRILDVDLKRKRISLSMKK 718
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP K ++ G L GTV+N++ GAF+ + ++G + S+ +D
Sbjct: 624 RDPREELPKPIFKSGVIEMKDLKPGMILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADK 683
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKE 334
+ + ++VG V VR+L + R +++L+MKKE
Sbjct: 684 FVKHPL--DIVKVGDIVEVRILDVDLKRKRISLSMKKE 719
>gi|423105327|ref|ZP_17093029.1| protein yhgF [Klebsiella oxytoca 10-5242]
gi|376381091|gb|EHS93831.1| protein yhgF [Klebsiella oxytoca 10-5242]
Length = 776
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVM 706
Query: 204 EANAETGRISLTMR 217
E + RI+LTMR
Sbjct: 707 EVDLPRKRIALTMR 720
>gi|225375199|ref|ZP_03752420.1| hypothetical protein ROSEINA2194_00824 [Roseburia inulinivorans DSM
16841]
gi|225212950|gb|EEG95304.1| hypothetical protein ROSEINA2194_00824 [Roseburia inulinivorans DSM
16841]
Length = 748
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 50/75 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G VR++ FGAF+D G DGLVH+S++SD F+K +VSVG V+V++
Sbjct: 673 KDLTPGMVLKGTVRNVIDFGAFVDIGVHQDGLVHISQMSDKFIKHPLEVVSVGDIVEVKV 732
Query: 203 IEANAETGRISLTMR 217
+ + + RI LTM+
Sbjct: 733 MSVDLKKQRIQLTMK 747
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP + D ++ G L+GTV+N+ GAF+ + ++G + S+ SD
Sbjct: 654 RDPREDMPKPILRSDVLEMKDLTPGMVLKGTVRNVIDFGAFVDIGVHQDGLVHISQMSDK 713
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMK 332
+ + + VG V V+V+ + + ++ LTMK
Sbjct: 714 FIKHPL--EVVSVGDIVEVKVMSVDLKKQRIQLTMK 747
>gi|254474658|ref|ZP_05088044.1| S1 RNA binding domain protein [Ruegeria sp. R11]
gi|214028901|gb|EEB69736.1| S1 RNA binding domain protein [Ruegeria sp. R11]
Length = 786
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 53/99 (53%), Gaps = 11/99 (11%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVHVS+L+D FVKD +V GQ VKV +
Sbjct: 645 DLKPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKTGQVVKVTVT 704
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTR 242
E + RI LTM+ KD AS + R R
Sbjct: 705 EVDVPRKRIGLTMK-----------KDGGASAKEERNAR 732
>gi|56962592|ref|YP_174318.1| transcriptional accessory protein [Bacillus clausii KSM-K16]
gi|56908830|dbj|BAD63357.1| transcriptional accessory protein [Bacillus clausii KSM-K16]
Length = 720
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 51/78 (65%)
Query: 140 VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
+K EDL G G VR+I FGAF+D G DGLVHVS+LSD ++K +VS+G V
Sbjct: 638 LKMEDLEKGMELQGTVRNIVDFGAFVDIGVKQDGLVHVSKLSDRYIKHPMEVVSIGDVVT 697
Query: 200 VRLIEANAETGRISLTMR 217
V + + + + GRISLTM+
Sbjct: 698 VWVEDVDEKKGRISLTMK 715
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R + P K+D +K KG +L+GTV+N+ GAF+ + ++G + S+ SD
Sbjct: 622 RDPRDELAAPQLKQDVLKMEDLEKGMELQGTVRNIVDFGAFVDIGVKQDGLVHVSKLSDR 681
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMK 332
+ M + +G V+V V + +G+++LTMK
Sbjct: 682 YIKHPM--EVVSIGDVVTVWVEDVDEKKGRISLTMK 715
>gi|152974085|ref|YP_001373602.1| RNA-binding S1 domain-containing protein [Bacillus cytotoxicus NVH
391-98]
gi|152022837|gb|ABS20607.1| RNA binding S1 domain protein [Bacillus cytotoxicus NVH 391-98]
Length = 722
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 51/77 (66%)
Query: 140 VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
+K EDL G G VR++ FGAFID G DGLVH+S+LS FVK IVSVGQ VK
Sbjct: 642 LKLEDLKRGMELEGTVRNVVDFGAFIDIGVKQDGLVHISKLSKQFVKHPLDIVSVGQIVK 701
Query: 200 VRLIEANAETGRISLTM 216
V + + + + GR++L+M
Sbjct: 702 VWVDDVDMKKGRVALSM 718
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP K+ +K +G +LEGTV+N+ GAFI + ++G + S+ S
Sbjct: 626 RDLRDELPKPLLKKGILKLEDLKRGMELEGTVRNVVDFGAFIDIGVKQDGLVHISKLSKQ 685
Query: 299 GFANMMGGSSLQVGQEVSVRV--LRISRGQVTLTM 331
+ + S VGQ V V V + + +G+V L+M
Sbjct: 686 FVKHPLDIVS--VGQIVKVWVDDVDMKKGRVALSM 718
>gi|238797303|ref|ZP_04640804.1| hypothetical protein ymoll0001_3680 [Yersinia mollaretii ATCC
43969]
gi|238718940|gb|EEQ10755.1| hypothetical protein ymoll0001_3680 [Yersinia mollaretii ATCC
43969]
Length = 788
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 47/74 (63%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L+D FV D +V G VKV+++
Sbjct: 646 DLTPGMILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVM 705
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 706 EVDLQRKRIALTMR 719
>gi|317050828|ref|YP_004111944.1| Tex-like protein [Desulfurispirillum indicum S5]
gi|316945912|gb|ADU65388.1| Tex-like protein [Desulfurispirillum indicum S5]
Length = 729
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 51/75 (68%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E++ G F G VR++ FGAF+D G DGLVH+S L+D FVK+ +VSVG V+VR+
Sbjct: 652 EEIEAGQVFEGVVRNVVDFGAFVDIGLKNDGLVHISELADTFVKNPHEVVSVGNRVRVRV 711
Query: 203 IEANAETGRISLTMR 217
+ + GR+SL+M+
Sbjct: 712 LSIDKSRGRLSLSMK 726
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP + ++ + GQ EG V+N+ GAF+ + +G + SE +D
Sbjct: 633 RDPRSEMEKPILRSSKLNLEEIEAGQVFEGVVRNVVDFGAFVDIGLKNDGLVHISELADT 692
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMK 332
N + VG V VRVL I SRG+++L+MK
Sbjct: 693 FVKN--PHEVVSVGNRVRVRVLSIDKSRGRLSLSMK 726
>gi|163802253|ref|ZP_02196148.1| hypothetical protein 1103602000603_AND4_17714 [Vibrio sp. AND4]
gi|159174058|gb|EDP58868.1| hypothetical protein AND4_17714 [Vibrio sp. AND4]
Length = 773
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 56/91 (61%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L+D FV D +V G VKV+++
Sbjct: 647 DLEPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAGDIVKVKVM 706
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATAS 234
E + + RI L+MR SD+ + + + +TA+
Sbjct: 707 EVDVQRKRIGLSMRLSDEPGQDNRSQRSTAA 737
>gi|389581130|ref|ZP_10171157.1| transcriptional accessory protein [Desulfobacter postgatei 2ac9]
gi|389402765|gb|EIM64987.1| transcriptional accessory protein [Desulfobacter postgatei 2ac9]
Length = 715
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 53/77 (68%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL+ G V ++ FGAF+D G DGLVH+S+L+D FVKD +V+V Q+VKVR+
Sbjct: 633 KDLVQDMVVPGIVTNVTAFGAFVDIGVHQDGLVHISQLADRFVKDPNEVVNVRQQVKVRV 692
Query: 203 IEANAETGRISLTMRES 219
+E + RISL+M+++
Sbjct: 693 LEVDIPRKRISLSMKKN 709
>gi|161505930|ref|YP_001573042.1| hypothetical protein SARI_04111 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:- str. RSK2980]
gi|160867277|gb|ABX23900.1| hypothetical protein SARI_04111 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 776
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S L++ FV D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLANKFVDDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|429205274|ref|ZP_19196551.1| 30S ribosomal protein S1 [Lactobacillus saerimneri 30a]
gi|428146346|gb|EKW98585.1| 30S ribosomal protein S1 [Lactobacillus saerimneri 30a]
Length = 398
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 93/197 (47%), Gaps = 36/197 (18%)
Query: 126 SRRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFV 185
+R R A+K + + L+ G GKV + FGAFID G DGLVHVS +S V
Sbjct: 182 AREEREAKKKAV----MDKLVVGDVVEGKVARLTNFGAFIDLGG-VDGLVHVSEISYERV 236
Query: 186 KDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRST 245
++ VGQ+VKV+++ + E RISL+++++
Sbjct: 237 GKPADVLKVGQDVKVKVLAVDEERDRISLSIKQT-------------------------L 271
Query: 246 SKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMG 305
+P ++ E K +G +EGTVK LT GAF+ + G EG + S+ S A
Sbjct: 272 PEPWEEVAE----KIAEGDVVEGTVKRLTSFGAFVEVLPGVEGLVHISQISHKHIATP-- 325
Query: 306 GSSLQVGQEVSVRVLRI 322
L G +V V+VL +
Sbjct: 326 NEVLTSGDKVKVKVLNV 342
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 34/188 (18%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G T V + G +D G G + S +SD +V D+ GQ ++++++E
Sbjct: 114 GEHITAPVTQVVKGGLVVDAG--VRGFIPASMISDQYVADLNQF--KGQTLELKIVEIEP 169
Query: 208 ETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLE 267
R+ L+ +E I++ +++ A D K V G +E
Sbjct: 170 SDNRLILSHKE---IAREEREAKKKAVMD----------------------KLVVGDVVE 204
Query: 268 GTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRIS--RG 325
G V LT GAFI L G +G + SE S + L+VGQ+V V+VL + R
Sbjct: 205 GKVARLTNFGAFIDLG-GVDGLVHVSEISYERVGKP--ADVLKVGQDVKVKVLAVDEERD 261
Query: 326 QVTLTMKK 333
+++L++K+
Sbjct: 262 RISLSIKQ 269
Score = 46.2 bits (108), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 44/75 (58%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E + G G V+ + FGAF++ +GLVH+S++S + +++ G +VKV++
Sbjct: 280 EKIAEGDVVEGTVKRLTSFGAFVEVLPGVEGLVHISQISHKHIATPNEVLTSGDKVKVKV 339
Query: 203 IEANAETGRISLTMR 217
+ +A R++L+++
Sbjct: 340 LNVDAPDHRLALSIK 354
>gi|423116823|ref|ZP_17104514.1| protein yhgF [Klebsiella oxytoca 10-5245]
gi|376377290|gb|EHS90061.1| protein yhgF [Klebsiella oxytoca 10-5245]
Length = 776
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVM 706
Query: 204 EANAETGRISLTMR 217
E + RI+LTMR
Sbjct: 707 EVDLPRKRIALTMR 720
>gi|343517793|ref|ZP_08754789.1| Tex-like protein N-terminal domain protein [Haemophilus pittmaniae
HK 85]
gi|343394644|gb|EGV07191.1| Tex-like protein N-terminal domain protein [Haemophilus pittmaniae
HK 85]
Length = 767
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 47/74 (63%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAFID G DGLVH+S LSD FV+D +V G VKV+++
Sbjct: 647 DLKPGMILEGTVTNVTNFGAFIDIGVHQDGLVHISSLSDKFVEDPHQVVKTGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + RI+LTMR
Sbjct: 707 EVDIPRKRIALTMR 720
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 15/107 (14%)
Query: 243 RSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLP 291
+ KPG+ R E KT F G + LEGTV N+T GAFI + ++G +
Sbjct: 620 KELEKPGRDPRGEFKTAVFADGVEEITDLKPGMILEGTVTNVTNFGAFIDIGVHQDGLVH 679
Query: 292 TSEESDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKEDD 336
S SD + ++ G V V+VL I R ++ LTM+ +++
Sbjct: 680 ISSLSDKFVED--PHQVVKTGDIVKVKVLEVDIPRKRIALTMRLDEE 724
>gi|298368577|ref|ZP_06979895.1| ribosomal protein S1 [Neisseria sp. oral taxon 014 str. F0314]
gi|298282580|gb|EFI24067.1| ribosomal protein S1 [Neisseria sp. oral taxon 014 str. F0314]
Length = 561
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 96/193 (49%), Gaps = 33/193 (17%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E+L G G V++I +GAF+D G DGL+H++ L+ VK ++ VGQEV+ ++
Sbjct: 188 ENLQEGTVVKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKV 246
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
++ + + R+SL M+ Q + +G TRR + +
Sbjct: 247 LKFDQDKQRVSLGMK---------QLGEDPWNG----LTRR----------------YPQ 277
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G L G V NLT GAF+ + +G EG + S E D N+ +Q+G EV V +L I
Sbjct: 278 GTRLFGKVSNLTDYGAFVEIEQGIEGLVHVS-EMDWTNKNVHPSKVVQLGDEVEVMILEI 336
Query: 323 --SRGQVTLTMKK 333
R +++L MK+
Sbjct: 337 DEDRRRISLGMKQ 349
Score = 45.8 bits (107), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 84/197 (42%), Gaps = 46/197 (23%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS-----DNFVKDVGSIVSVGQEVKVRL 202
G +G V+SI FG F+ DGLVH+S LS + V+ G+EV+ +
Sbjct: 365 GDKISGAVKSITDFGVFVGLPGNIDGLVHLSDLSWTESGEEAVRKYKK----GEEVEAVV 420
Query: 203 IEANAETGRISLTMR--ESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKF 260
+ + + RISL ++ E D D
Sbjct: 421 LAIDVDKERISLGIKQLEGDPFGNFISVND------------------------------ 450
Query: 261 VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVL 320
KG ++GTVK++ GA I+L + EG+LP +E S + ++ + ++ G EV V
Sbjct: 451 -KGSLVKGTVKSVDAKGAVIALSDEVEGYLPAAEWSSERVEDLR--NVVKEGDEVEAIVA 507
Query: 321 RISRGQ--VTLTMKKED 335
+ R + L++K +D
Sbjct: 508 TVDRKNRSIRLSVKAKD 524
>gi|451944519|ref|YP_007465155.1| transcriptional accessory protein [Corynebacterium halotolerans YIM
70093 = DSM 44683]
gi|451903906|gb|AGF72793.1| transcriptional accessory protein [Corynebacterium halotolerans YIM
70093 = DSM 44683]
Length = 776
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 51/81 (62%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAF+D G DGLVHVS +S+ FV D +V GQ VKV
Sbjct: 633 KVSDLTPGMILEGTVTNVAAFGAFVDIGVHQDGLVHVSAMSEKFVSDPHEVVRSGQVVKV 692
Query: 201 RLIEANAETGRISLTMRESDD 221
+++E + E RI L++R +D+
Sbjct: 693 KVMEVDVERQRIGLSLRLNDE 713
>gi|37524230|ref|NP_927574.1| hypothetical protein plu0210 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36783653|emb|CAE12505.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 776
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 646 DLHPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNRFVEDPHTVVKAGDIVKVKVL 705
Query: 204 EANAETGRISLTMR 217
E + RI+LTMR
Sbjct: 706 EVDLNRKRIALTMR 719
>gi|423126248|ref|ZP_17113927.1| protein yhgF [Klebsiella oxytoca 10-5250]
gi|376397820|gb|EHT10450.1| protein yhgF [Klebsiella oxytoca 10-5250]
Length = 776
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVM 706
Query: 204 EANAETGRISLTMR 217
E + RI+LTMR
Sbjct: 707 EVDLPRKRIALTMR 720
>gi|238751149|ref|ZP_04612644.1| hypothetical protein yrohd0001_13330 [Yersinia rohdei ATCC 43380]
gi|238710627|gb|EEQ02850.1| hypothetical protein yrohd0001_13330 [Yersinia rohdei ATCC 43380]
Length = 793
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 47/74 (63%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L+D FV D +V G VKV+++
Sbjct: 646 DLTPGMILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVM 705
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 706 EVDLQRKRIALTMR 719
>gi|375257858|ref|YP_005017028.1| putative transcriptional accessory protein [Klebsiella oxytoca KCTC
1686]
gi|365907336|gb|AEX02789.1| putative transcriptional accessory protein [Klebsiella oxytoca KCTC
1686]
Length = 776
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVM 706
Query: 204 EANAETGRISLTMR 217
E + RI+LTMR
Sbjct: 707 EVDLPRKRIALTMR 720
>gi|402839926|ref|ZP_10888400.1| protein YhgF [Klebsiella sp. OBRC7]
gi|402287347|gb|EJU35800.1| protein YhgF [Klebsiella sp. OBRC7]
Length = 776
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVM 706
Query: 204 EANAETGRISLTMR 217
E + RI+LTMR
Sbjct: 707 EVDLPRKRIALTMR 720
>gi|423110825|ref|ZP_17098520.1| protein yhgF [Klebsiella oxytoca 10-5243]
gi|376378047|gb|EHS90812.1| protein yhgF [Klebsiella oxytoca 10-5243]
Length = 776
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVM 706
Query: 204 EANAETGRISLTMR 217
E + RI+LTMR
Sbjct: 707 EVDLPRKRIALTMR 720
>gi|357406716|ref|YP_004918640.1| transcription accessory protein TEX [Methylomicrobium alcaliphilum
20Z]
gi|351719381|emb|CCE25057.1| putative transcription accessory protein TEX [Methylomicrobium
alcaliphilum 20Z]
Length = 758
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 48/75 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L+D FVKD +V G VKV+++
Sbjct: 644 DLKPGMMLEGVVTNVANFGAFVDIGVHQDGLVHISHLADVFVKDPRDVVKTGDMVKVKVL 703
Query: 204 EANAETGRISLTMRE 218
E + RISLTM++
Sbjct: 704 EIDVPRQRISLTMKK 718
Score = 39.7 bits (91), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 256 KTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEV 315
K T G LEG V N+ GAF+ + ++G + S +D + ++ G V
Sbjct: 641 KITDLKPGMMLEGVVTNVANFGAFVDIGVHQDGLVHISHLADVFVKD--PRDVVKTGDMV 698
Query: 316 SVRVLRIS--RGQVTLTMKKED 335
V+VL I R +++LTMKKE+
Sbjct: 699 KVKVLEIDVPRQRISLTMKKEE 720
>gi|417841001|ref|ZP_12487108.1| putative ribosomal protein S1, RNA-binding domain-containing
protein [Haemophilus haemolyticus M19501]
gi|341950096|gb|EGT76689.1| putative ribosomal protein S1, RNA-binding domain-containing
protein [Haemophilus haemolyticus M19501]
Length = 770
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 47/74 (63%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LSD FV+D +V G VKV+++
Sbjct: 647 DLKPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + RI+LTMR
Sbjct: 707 EVDVPRKRIALTMR 720
Score = 40.4 bits (93), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 15/107 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT F +G + LEGTV N+T GAF+ + ++G + S
Sbjct: 624 KPGRDPRGEFKTAVFAEGVEEITDLKPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSL 683
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKKEDDVGSN 340
SD + ++ G V V+VL + R ++ LTM+ ++ N
Sbjct: 684 SDKFVED--PHQVVKTGDIVKVKVLEVDVPRKRIALTMRLDESAVKN 728
>gi|359773895|ref|ZP_09277278.1| putative transcriptional accessory protein [Gordonia effusa NBRC
100432]
gi|359308983|dbj|GAB20056.1| putative transcriptional accessory protein [Gordonia effusa NBRC
100432]
Length = 796
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 63/114 (55%), Gaps = 15/114 (13%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAF+D G DGLVHVS ++D F+ D ++V GQ V+V
Sbjct: 648 KVSDLKPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMADRFISDPHAVVRSGQVVRV 707
Query: 201 RLIEANAETGRISLTMRESDDI---------------SKLQQQKDATASGDKVR 239
++I+ + + RI L++R +D++ SK Q++ +A GD R
Sbjct: 708 KVIQVDVDRQRIGLSLRLNDEVGGDSRRQSRSGDRAESKDQRRGNANGRGDSGR 761
>gi|168213729|ref|ZP_02639354.1| RNA-binding protein [Clostridium perfringens CPE str. F4969]
gi|170714808|gb|EDT26990.1| RNA-binding protein [Clostridium perfringens CPE str. F4969]
Length = 720
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 53/79 (67%)
Query: 140 VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
++ +DL PG G VR++ FGAF+D G DGLVH S+++D FVK IV VG V+
Sbjct: 640 IEMKDLKPGMILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADKFVKHPLDIVKVGDIVE 699
Query: 200 VRLIEANAETGRISLTMRE 218
VR+++ + + RISL+M++
Sbjct: 700 VRILDVDLKRKRISLSMKK 718
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP K ++ G L GTV+N++ GAF+ + ++G + S+ +D
Sbjct: 624 RDPREELPKPIFKSGVIEMKDLKPGMILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADK 683
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKE 334
+ + ++VG V VR+L + R +++L+MKKE
Sbjct: 684 FVKHPL--DIVKVGDIVEVRILDVDLKRKRISLSMKKE 719
>gi|283798764|ref|ZP_06347917.1| protein YhgF [Clostridium sp. M62/1]
gi|291073448|gb|EFE10812.1| Tex-like protein N-terminal domain protein [Clostridium sp. M62/1]
Length = 713
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 50/75 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G VR++ FG F+D G DGLVH+S+++D ++K +VSVG V+V++
Sbjct: 638 KDLKPGMILKGTVRNVIDFGVFVDIGVHQDGLVHISQMTDRYIKHPLEVVSVGDIVEVKV 697
Query: 203 IEANAETGRISLTMR 217
++ N E RI LTM+
Sbjct: 698 LDVNLEKKRIGLTMK 712
>gi|110803195|ref|YP_699443.1| transcription accessory protein [Clostridium perfringens SM101]
gi|110683696|gb|ABG87066.1| RNA-binding protein [Clostridium perfringens SM101]
Length = 720
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 53/79 (67%)
Query: 140 VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
++ +DL PG G VR++ FGAF+D G DGLVH S+++D FVK IV VG V+
Sbjct: 640 IEMKDLKPGMILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADRFVKHPLDIVKVGDIVE 699
Query: 200 VRLIEANAETGRISLTMRE 218
VR+++ + + RISL+M++
Sbjct: 700 VRILDVDLKRKRISLSMKK 718
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP K ++ G L GTV+N++ GAF+ + ++G + S+ +D
Sbjct: 624 RDPREELPKPIFKSGVIEMKDLKPGMILMGTVRNVSDFGAFVDIGVHQDGLVHKSQMADR 683
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKE 334
+ + ++VG V VR+L + R +++L+MKKE
Sbjct: 684 FVKHPL--DIVKVGDIVEVRILDVDLKRKRISLSMKKE 719
>gi|443475302|ref|ZP_21065256.1| Tex-like protein [Pseudanabaena biceps PCC 7429]
gi|443019892|gb|ELS33921.1| Tex-like protein [Pseudanabaena biceps PCC 7429]
Length = 730
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL G G + ++ FGAF+D G DGLVH+S+L+++FV D IV VGQ VKVR++
Sbjct: 656 DLQIGMELEGIITNVANFGAFVDIGVHQDGLVHISQLANHFVSDPKQIVKVGQVVKVRVL 715
Query: 204 EANAETGRISLTMR 217
E N RISL+M+
Sbjct: 716 EVNESLKRISLSMK 729
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 69/136 (50%), Gaps = 17/136 (12%)
Query: 212 ISLTMRESDDISKLQQQKDAT-ASGD-KVRTTRRSTSKPGQK-RDEMKTTKFVK------ 262
+S + SD + + +K T A G+ +R R KPG+ R E K+ F++
Sbjct: 596 LSAIAQASDKLKTVNLKKYVTEAIGEPTLRDILRELEKPGRDPRAEFKSVNFLEAVQKIT 655
Query: 263 ----GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVR 318
G +LEG + N+ GAF+ + ++G + S+ ++ ++ ++VGQ V VR
Sbjct: 656 DLQIGMELEGIITNVANFGAFVDIGVHQDGLVHISQLANHFVSD--PKQIVKVGQVVKVR 713
Query: 319 VLRI--SRGQVTLTMK 332
VL + S +++L+MK
Sbjct: 714 VLEVNESLKRISLSMK 729
>gi|296269654|ref|YP_003652286.1| RNA binding S1 domain-containing protein [Thermobispora bispora DSM
43833]
gi|296092441|gb|ADG88393.1| RNA binding S1 domain protein [Thermobispora bispora DSM 43833]
Length = 784
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 52/82 (63%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG G V ++ FGAF+D G DGLVHVS ++D FVKD +V G V+V++
Sbjct: 651 EDLKPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMADRFVKDPREVVKPGDIVRVKV 710
Query: 203 IEANAETGRISLTMRESDDISK 224
++ + RISLT+R D+ ++
Sbjct: 711 LDVDLARKRISLTLRLDDEAAR 732
>gi|295092746|emb|CBK78853.1| Transcriptional accessory protein [Clostridium cf. saccharolyticum
K10]
Length = 713
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 50/75 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G VR++ FG F+D G DGLVH+S+++D ++K +VSVG V+V++
Sbjct: 638 KDLKPGMILKGTVRNVIDFGVFVDIGVHQDGLVHISQMTDRYIKHPLEVVSVGDIVEVKV 697
Query: 203 IEANAETGRISLTMR 217
++ N E RI LTM+
Sbjct: 698 LDVNLEKKRIGLTMK 712
>gi|238758693|ref|ZP_04619867.1| hypothetical protein yaldo0001_31050 [Yersinia aldovae ATCC 35236]
gi|238702990|gb|EEP95533.1| hypothetical protein yaldo0001_31050 [Yersinia aldovae ATCC 35236]
Length = 788
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 47/74 (63%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L+D FV D +V G VKV+++
Sbjct: 646 DLTPGMILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVM 705
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 706 EVDLQRKRIALTMR 719
>gi|291287721|ref|YP_003504537.1| Tex-like protein [Denitrovibrio acetiphilus DSM 12809]
gi|290884881|gb|ADD68581.1| Tex-like protein protein-like protein [Denitrovibrio acetiphilus
DSM 12809]
Length = 706
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 50/75 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E L G TGKV ++ FGAF+D G DGLVH+S+L+D FV D +V VGQ VK ++
Sbjct: 631 ESLKEGDVLTGKVSNVVDFGAFVDVGLKNDGLVHISQLADRFVSDPSEVVKVGQTVKTKV 690
Query: 203 IEANAETGRISLTMR 217
+ + E GR+SL+M+
Sbjct: 691 LSVDRERGRLSLSMK 705
>gi|444432846|ref|ZP_21227996.1| putative transcriptional accessory protein [Gordonia soli NBRC
108243]
gi|443886472|dbj|GAC69717.1| putative transcriptional accessory protein [Gordonia soli NBRC
108243]
Length = 810
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 50/81 (61%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAFID G DGLVHVS ++ FV D +V GQ V+V
Sbjct: 648 KVGDLRPGMVLEGVVTNVAAFGAFIDVGVHQDGLVHVSAMAHRFVSDPHEVVRSGQVVRV 707
Query: 201 RLIEANAETGRISLTMRESDD 221
+++E + E RISL++R DD
Sbjct: 708 KVMEVDVERQRISLSLRLDDD 728
>gi|358065599|ref|ZP_09152135.1| hypothetical protein HMPREF9473_04198 [Clostridium hathewayi
WAL-18680]
gi|356696085|gb|EHI57708.1| hypothetical protein HMPREF9473_04198 [Clostridium hathewayi
WAL-18680]
Length = 712
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 56/91 (61%), Gaps = 7/91 (7%)
Query: 134 KSEMPP-------VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVK 186
+ EMP ++ +DL PG G VR++ FGAF+D G DGLVH+S+++D ++K
Sbjct: 621 RDEMPKPILRTDVLEMKDLTPGMILKGTVRNVIDFGAFVDIGVHQDGLVHISQMTDRYIK 680
Query: 187 DVGSIVSVGQEVKVRLIEANAETGRISLTMR 217
+VSVG V+V++I + RI+LTM+
Sbjct: 681 HPMEVVSVGDIVEVKVISVDLAKKRIALTMK 711
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP + D ++ G L+GTV+N+ GAF+ + ++G + S+ +D
Sbjct: 618 RDPRDEMPKPILRTDVLEMKDLTPGMILKGTVRNVIDFGAFVDIGVHQDGLVHISQMTDR 677
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMK 332
+ M + VG V V+V+ + ++ ++ LTMK
Sbjct: 678 YIKHPM--EVVSVGDIVEVKVISVDLAKKRIALTMK 711
>gi|114320628|ref|YP_742311.1| RNA-binding S1 domain-containing protein [Alkalilimnicola ehrlichii
MLHE-1]
gi|114227022|gb|ABI56821.1| RNA binding S1 domain protein [Alkalilimnicola ehrlichii MLHE-1]
Length = 782
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S L++ FV+D +V G VKV++
Sbjct: 648 QDLAPGMVLEGTVTNVTNFGAFVDIGVHQDGLVHISALAERFVRDPHEVVKAGDIVKVKV 707
Query: 203 IEANAETGRISLTMRESDD 221
+E + E RI L+MR D+
Sbjct: 708 MEVDLERKRIGLSMRLDDE 726
>gi|124266982|ref|YP_001020986.1| transcription accessory protein [Methylibium petroleiphilum PM1]
gi|124259757|gb|ABM94751.1| putative transcription accessory protein [Methylibium
petroleiphilum PM1]
Length = 793
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 49/75 (65%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL G T G V ++ FGAF+D G DGLVHVS+L++ FV D IV G VKV++
Sbjct: 661 KDLQAGMTLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLANKFVNDAREIVKTGDIVKVKV 720
Query: 203 IEANAETGRISLTMR 217
+E + GRISLTM+
Sbjct: 721 LEVDLARGRISLTMK 735
Score = 43.9 bits (102), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 15/99 (15%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R + K +F +G D LEGTV N+ + GAF+ L ++G + S+
Sbjct: 639 KPGRDPRPDFKVARFNEGVDDIKDLQAGMTLEGTVSNVAQFGAFVDLGVHQDGLVHVSQL 698
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMK 332
++ F N ++ G V V+VL + +RG+++LTMK
Sbjct: 699 ANK-FVN-DAREIVKTGDIVKVKVLEVDLARGRISLTMK 735
>gi|392552965|ref|ZP_10300102.1| hypothetical protein PspoU_17011 [Pseudoalteromonas spongiae
UST010723-006]
Length = 765
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 62/112 (55%), Gaps = 6/112 (5%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L++ FV D +V G VKV+++
Sbjct: 642 DLKPGMVLEGVVSNVANFGAFVDVGVHQDGLVHISSLTNKFVSDPREVVKAGDIVKVKVL 701
Query: 204 EANAETGRISLTMRESDDI------SKLQQQKDATASGDKVRTTRRSTSKPG 249
E + E RIS TMR ++I +K + K A A+ K + + + + G
Sbjct: 702 EVDVERKRISFTMRLDEEIREKAPAAKPKTNKPAQATAKKAKPKQNNNAAMG 753
>gi|392938874|ref|ZP_10304518.1| LOW QUALITY PROTEIN: transcriptional accessory protein
[Thermoanaerobacter siderophilus SR4]
gi|392290624|gb|EIV99067.1| LOW QUALITY PROTEIN: transcriptional accessory protein
[Thermoanaerobacter siderophilus SR4]
Length = 712
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
+L PG G VR++ FG F+D G TDGLVH+S +S +++K +VSVG VKVR++
Sbjct: 639 ELKPGMELMGTVRNVTDFGCFVDIGVHTDGLVHISEMSQSYIKHPLDVVSVGDIVKVRVL 698
Query: 204 EANAETGRISLTMR 217
+ E RISL+M+
Sbjct: 699 SVDIERNRISLSMK 712
Score = 45.8 bits (107), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP + D M + G +L GTV+N+T G F+ + +G + SE S
Sbjct: 619 RDPREDLPKPILRSDVMTINELKPGMELMGTVRNVTDFGCFVDIGVHTDGLVHISEMSQS 678
Query: 299 GFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMK 332
+ + S VG V VRVL I R +++L+MK
Sbjct: 679 YIKHPLDVVS--VGDIVKVRVLSVDIERNRISLSMK 712
>gi|374300523|ref|YP_005052162.1| Tex-like protein [Desulfovibrio africanus str. Walvis Bay]
gi|332553459|gb|EGJ50503.1| Tex-like protein [Desulfovibrio africanus str. Walvis Bay]
Length = 710
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 51/76 (67%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAFID G DGL HVS+++D +VKD +V VGQ+V R++
Sbjct: 635 DLEPGMVLPGVVTNVTRFGAFIDVGVHQDGLAHVSQIADRYVKDPAEVVRVGQKVTARVL 694
Query: 204 EANAETGRISLTMRES 219
E + E RISL+++++
Sbjct: 695 EVDKERKRISLSLKKA 710
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G L G V N+TR GAFI + ++G S+ +D + ++VGQ+V+ RVL +
Sbjct: 639 GMVLPGVVTNVTRFGAFIDVGVHQDGLAHVSQIADRYVKD--PAEVVRVGQKVTARVLEV 696
Query: 323 --SRGQVTLTMKK 333
R +++L++KK
Sbjct: 697 DKERKRISLSLKK 709
>gi|226366001|ref|YP_002783784.1| transcriptional accessory protein [Rhodococcus opacus B4]
gi|226244491|dbj|BAH54839.1| transcriptional accessory protein [Rhodococcus opacus B4]
Length = 807
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 69/138 (50%), Gaps = 6/138 (4%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K L PG T G V ++ FGAF+D G DGLVHVS +S NFVKD +V G V V
Sbjct: 633 KVSHLKPGMTLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSHNFVKDPRDVVKSGDVVTV 692
Query: 201 RLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKF 260
+++E + RI LT+R D++ ++ D G R R S Q++D +
Sbjct: 693 KVLEVDEARQRIGLTLRLDDEVGAGGRKNDGPRGGGAQRQDR---SGGAQRQDR---SGG 746
Query: 261 VKGQDLEGTVKNLTRSGA 278
+ QD G + RSG
Sbjct: 747 AQRQDRSGGAQRQDRSGG 764
>gi|417844737|ref|ZP_12490777.1| putative nucleic acid-binding, OB-fold-like protein [Haemophilus
haemolyticus M21639]
gi|341956404|gb|EGT82831.1| putative nucleic acid-binding, OB-fold-like protein [Haemophilus
haemolyticus M21639]
Length = 770
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 47/74 (63%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LSD FV+D +V G VKV+++
Sbjct: 647 DLKPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + RI+LTMR
Sbjct: 707 EVDVPRKRIALTMR 720
Score = 40.4 bits (93), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 15/107 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT F +G + LEGTV N+T GAF+ + ++G + S
Sbjct: 624 KPGRDPRGEFKTAVFAEGVEEITDLKPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSL 683
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKKEDDVGSN 340
SD + ++ G V V+VL + R ++ LTM+ ++ N
Sbjct: 684 SDKFVED--PHQVVKTGDIVKVKVLEVDVPRKRIALTMRLDESAVKN 728
>gi|422807324|ref|ZP_16855754.1| tex protein containing protein [Escherichia fergusonii B253]
gi|324111719|gb|EGC05699.1| tex protein containing protein [Escherichia fergusonii B253]
Length = 773
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|238765201|ref|ZP_04626132.1| hypothetical protein ykris0001_45920 [Yersinia kristensenii ATCC
33638]
gi|238696584|gb|EEP89370.1| hypothetical protein ykris0001_45920 [Yersinia kristensenii ATCC
33638]
Length = 792
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 47/74 (63%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L+D FV D +V G VKV+++
Sbjct: 646 DLTPGMILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVM 705
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 706 EVDLQRKRIALTMR 719
>gi|92116616|ref|YP_576345.1| RNA binding S1 [Nitrobacter hamburgensis X14]
gi|91799510|gb|ABE61885.1| RNA binding S1 [Nitrobacter hamburgensis X14]
Length = 778
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 62/109 (56%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+D+ PG G V ++ FGAF+D G DGL+H+S +S +FVKD ++V G VKV++
Sbjct: 646 KDVKPGMILEGAVTNVAAFGAFVDIGVHQDGLIHISAMSKSFVKDPRAVVKSGDVVKVKV 705
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQK 251
+E + RI+LT+R D++ ++ DK R ++P Q+
Sbjct: 706 LEVDVARKRIALTLRLDDELGGKSERAAQGLPRDKTRPMTSPPARPHQQ 754
>gi|261880508|ref|ZP_06006935.1| YhgF like protein [Prevotella bergensis DSM 17361]
gi|270332848|gb|EFA43634.1| YhgF like protein [Prevotella bergensis DSM 17361]
Length = 710
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 138 PPVKN-EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQ 196
P VK ED++ G G V +I FGAF+D G DGLVH+S+L++ FVKD +V + Q
Sbjct: 629 PRVKTLEDVVTGMELPGIVTNITNFGAFVDIGVHQDGLVHISQLANRFVKDPNDVVKLHQ 688
Query: 197 EVKVRLIEANAETGRISLTMR 217
V+V++IE + RI+LTM+
Sbjct: 689 HVRVKVIEVDRRRRRIALTMK 709
>gi|308068003|ref|YP_003869608.1| hypothetical protein PPE_01222 [Paenibacillus polymyxa E681]
gi|305857282|gb|ADM69070.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
Length = 740
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 50/78 (64%)
Query: 140 VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
+K EDL PG G VR++ FGAF+D G +DGLVH+S+L FVK +VSVG V
Sbjct: 654 LKIEDLSPGMELQGTVRNVIDFGAFVDIGIKSDGLVHISQLRSGFVKHPMDVVSVGDNVT 713
Query: 200 VRLIEANAETGRISLTMR 217
V ++ + + GR+ LTM+
Sbjct: 714 VWVLNVDLKKGRVGLTMK 731
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R P ++D +K G +L+GTV+N+ GAF+ + +G + S+
Sbjct: 638 RDPRDELPLPVFRKDVLKIEDLSPGMELQGTVRNVIDFGAFVDIGIKSDGLVHISQLRSG 697
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMK 332
+ M S VG V+V VL + +G+V LTMK
Sbjct: 698 FVKHPMDVVS--VGDNVTVWVLNVDLKKGRVGLTMK 731
>gi|218550665|ref|YP_002384456.1| transcriptional accessory protein [Escherichia fergusonii ATCC
35469]
gi|218358206|emb|CAQ90853.1| transcriptional accessory protein [Escherichia fergusonii ATCC
35469]
Length = 773
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|126652083|ref|ZP_01724272.1| hypothetical protein BB14905_11570 [Bacillus sp. B14905]
gi|126591173|gb|EAZ85283.1| hypothetical protein BB14905_11570 [Bacillus sp. B14905]
Length = 125
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 49/70 (70%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G TGKV IQP+GAF+ T GLVH+S ++ FVKDV ++VGQEV+V+++E +
Sbjct: 8 GDVLTGKVTGIQPYGAFVALDDNTQGLVHISEITYGFVKDVSEFLAVGQEVEVKILEIDE 67
Query: 208 ETGRISLTMR 217
E +ISL+MR
Sbjct: 68 EAEKISLSMR 77
>gi|424738305|ref|ZP_18166743.1| general stress protein 13 [Lysinibacillus fusiformis ZB2]
gi|422947510|gb|EKU41902.1| general stress protein 13 [Lysinibacillus fusiformis ZB2]
Length = 115
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 54/81 (66%)
Query: 151 FTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETG 210
TGKV IQP+GAF+ T GLVH+S ++ FVKDV ++VGQEV+V+++E + E
Sbjct: 1 MTGKVTGIQPYGAFVALDDNTQGLVHISEITYGFVKDVSEFLAVGQEVEVKILEIDEEAE 60
Query: 211 RISLTMRESDDISKLQQQKDA 231
+ISL+MR D ++KDA
Sbjct: 61 KISLSMRALQDRPATVRKKDA 81
>gi|427800894|ref|ZP_18968573.1| transcriptional accessory protein, partial [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm5]
gi|414062945|gb|EKT44167.1| transcriptional accessory protein, partial [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm5]
Length = 723
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS FV D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|213647810|ref|ZP_03377863.1| putative transcription accessory protein [Salmonella enterica
subsp. enterica serovar Typhi str. J185]
Length = 774
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS FV D ++V G VKV+++
Sbjct: 645 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVL 704
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 705 EVDLQRKRIALTMR 718
>gi|432442888|ref|ZP_19685223.1| protein yhgF [Escherichia coli KTE189]
gi|433015705|ref|ZP_20204038.1| protein yhgF [Escherichia coli KTE104]
gi|430963931|gb|ELC81510.1| protein yhgF [Escherichia coli KTE189]
gi|431527081|gb|ELI03808.1| protein yhgF [Escherichia coli KTE104]
Length = 773
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|417720093|ref|ZP_12368968.1| protein yhgF [Shigella flexneri K-227]
gi|417746031|ref|ZP_12394547.1| transcriptional accessory protein [Shigella flexneri 2930-71]
gi|332763610|gb|EGJ93849.1| transcriptional accessory protein [Shigella flexneri 2930-71]
gi|333013052|gb|EGK32428.1| protein yhgF [Shigella flexneri K-227]
Length = 834
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|213426885|ref|ZP_03359635.1| putative transcription accessory protein [Salmonella enterica
subsp. enterica serovar Typhi str. E02-1180]
Length = 779
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS FV D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|192360642|ref|YP_001983623.1| S1 RNA binding domain-containing protein [Cellvibrio japonicus
Ueda107]
gi|190686807|gb|ACE84485.1| S1 RNA binding domain protein [Cellvibrio japonicus Ueda107]
Length = 776
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 57/107 (53%), Gaps = 12/107 (11%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS F+KD V G+ VKV+++
Sbjct: 651 DLVPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISALSHTFIKDPRDAVKAGEIVKVKVM 710
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQ 250
E + RI+L+MR D G+KV + + +P Q
Sbjct: 711 EVDVPRKRIALSMRLDD------------TPGEKVEGNSKGSGRPSQ 745
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 15/109 (13%)
Query: 247 KPGQK-RDEMKTTKF----------VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT +F V G LEGTV N+T GAF+ + ++G + S
Sbjct: 628 KPGRDPRPEFKTAQFQEGVEEITDLVPGMILEGTVTNVTNFGAFVDIGVHQDGLVHISAL 687
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKKEDDVGSNLQ 342
S + +++ G+ V V+V+ + R ++ L+M+ +D G ++
Sbjct: 688 SHTFIKDPR--DAVKAGEIVKVKVMEVDVPRKRIALSMRLDDTPGEKVE 734
>gi|30065310|ref|NP_839481.1| hypothetical protein S4337 [Shigella flexneri 2a str. 2457T]
gi|56480331|ref|NP_709180.2| hypothetical protein SF3426 [Shigella flexneri 2a str. 301]
gi|30043572|gb|AAP19292.1| hypothetical protein S4337 [Shigella flexneri 2a str. 2457T]
gi|56383882|gb|AAN44887.2| conserved hypothetical protein [Shigella flexneri 2a str. 301]
Length = 740
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 614 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 673
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 674 EVDLQRKRIALTMR 687
>gi|350572529|ref|ZP_08940826.1| YhgF like protein [Neisseria wadsworthii 9715]
gi|349789966|gb|EGZ43895.1| YhgF like protein [Neisseria wadsworthii 9715]
Length = 782
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 50/78 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL G G V ++ FGAF+D G DGLVH+S LS+ FV+D +V G VKV+++
Sbjct: 660 DLQVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAGDVVKVKVL 719
Query: 204 EANAETGRISLTMRESDD 221
E +AE RI+LTMR D+
Sbjct: 720 EVDAERKRIALTMRLDDE 737
>gi|167990707|ref|ZP_02571806.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168260772|ref|ZP_02682745.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|197264071|ref|ZP_03164145.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
gi|308065953|ref|NP_462407.2| RNase R [Salmonella enterica subsp. enterica serovar Typhimurium
str. LT2]
gi|374978140|ref|ZP_09719483.1| putative transcription accessory protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. TN061786]
gi|378986099|ref|YP_005249255.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. T000240]
gi|379702764|ref|YP_005244492.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. ST4/74]
gi|383498146|ref|YP_005398835.1| transcription accessory protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|418846032|ref|ZP_13400805.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19443]
gi|418857996|ref|ZP_13412618.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19470]
gi|418865393|ref|ZP_13419873.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19536]
gi|418867390|ref|ZP_13421847.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 4176]
gi|422027745|ref|ZP_16374070.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm1]
gi|422032786|ref|ZP_16378878.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|427555170|ref|ZP_18929373.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm8]
gi|427572785|ref|ZP_18933979.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|427594173|ref|ZP_18938888.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|427618424|ref|ZP_18943799.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
gi|427642049|ref|ZP_18948657.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|427657774|ref|ZP_18953402.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
gi|427662989|ref|ZP_18958273.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|427678534|ref|ZP_18963181.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
gi|197242326|gb|EDY24946.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
gi|205330816|gb|EDZ17580.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205350471|gb|EDZ37102.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|312914528|dbj|BAJ38502.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. T000240]
gi|321226554|gb|EFX51604.1| putative transcription accessory protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. TN061786]
gi|323131863|gb|ADX19293.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. ST4/74]
gi|380464967|gb|AFD60370.1| putative transcription accessory protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. 798]
gi|392811257|gb|EJA67267.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19443]
gi|392828675|gb|EJA84367.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19536]
gi|392834540|gb|EJA90145.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19470]
gi|392839230|gb|EJA94772.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 4176]
gi|414013367|gb|EKS97253.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm1]
gi|414014512|gb|EKS98354.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm8]
gi|414014944|gb|EKS98777.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|414028263|gb|EKT11457.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|414029484|gb|EKT12642.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|414031947|gb|EKT14981.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
gi|414043007|gb|EKT25526.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|414043346|gb|EKT25854.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
gi|414048519|gb|EKT30767.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|414056377|gb|EKT38208.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
Length = 776
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS FV D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|29144270|ref|NP_807612.1| transcription accessory protein [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|29139907|gb|AAO71472.1| putative transcription accessory protein [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
Length = 776
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS FV D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|16762783|ref|NP_458400.1| transcription accessory protein [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|56415419|ref|YP_152494.1| transcription accessory protein [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197364349|ref|YP_002143986.1| transcription accessory protein [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|213163102|ref|ZP_03348812.1| putative transcription accessory protein [Salmonella enterica
subsp. enterica serovar Typhi str. E00-7866]
gi|213852068|ref|ZP_03381600.1| putative transcription accessory protein [Salmonella enterica
subsp. enterica serovar Typhi str. M223]
gi|289824836|ref|ZP_06544279.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Typhi str. E98-3139]
gi|378962182|ref|YP_005219668.1| hypothetical protein STBHUCCB_42340 [Salmonella enterica subsp.
enterica serovar Typhi str. P-stx-12]
gi|25304123|pir||AB0998 probable transcription accessory protein STY4292 [imported] -
Salmonella enterica subsp. enterica serovar Typhi
(strain CT18)
gi|16505089|emb|CAD08110.1| putative transcription accessory protein [Salmonella enterica
subsp. enterica serovar Typhi]
gi|56129676|gb|AAV79182.1| putative transcription accessory protein [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|197095826|emb|CAR61399.1| putative transcription accessory protein [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|374356054|gb|AEZ47815.1| hypothetical protein STBHUCCB_42340 [Salmonella enterica subsp.
enterica serovar Typhi str. P-stx-12]
Length = 776
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS FV D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|421884002|ref|ZP_16315222.1| putative RNase R [Salmonella enterica subsp. enterica serovar
Senftenberg str. SS209]
gi|379986475|emb|CCF87495.1| putative RNase R [Salmonella enterica subsp. enterica serovar
Senftenberg str. SS209]
Length = 776
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS FV D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|331674895|ref|ZP_08375652.1| protein YhgF [Escherichia coli TA280]
gi|331067804|gb|EGI39202.1| protein YhgF [Escherichia coli TA280]
Length = 773
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|312114916|ref|YP_004012512.1| Tex-like protein [Rhodomicrobium vannielii ATCC 17100]
gi|311220045|gb|ADP71413.1| Tex-like protein [Rhodomicrobium vannielii ATCC 17100]
Length = 778
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 49/82 (59%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAFID G DGL HVS LS FVKD +V G V+V
Sbjct: 647 KISDLKPGMVLEGVVTNVAAFGAFIDIGVHQDGLAHVSALSKTFVKDPRDVVKPGDVVRV 706
Query: 201 RLIEANAETGRISLTMRESDDI 222
+++E +A RISLT+R D I
Sbjct: 707 KVLEVDAPRKRISLTLRLDDPI 728
>gi|260857514|ref|YP_003231405.1| transcriptional accessory protein [Escherichia coli O26:H11 str.
11368]
gi|260870133|ref|YP_003236535.1| putative transcriptional accessory protein [Escherichia coli
O111:H- str. 11128]
gi|415787767|ref|ZP_11494314.1| protein yhgF [Escherichia coli EPECa14]
gi|415820220|ref|ZP_11509409.1| protein yhgF [Escherichia coli OK1180]
gi|417195672|ref|ZP_12016049.1| Tex-like protein N-terminal domain protein [Escherichia coli
4.0522]
gi|417211139|ref|ZP_12021556.1| Tex-like protein N-terminal domain protein [Escherichia coli
JB1-95]
gi|417296677|ref|ZP_12083924.1| Tex-like protein N-terminal domain protein [Escherichia coli 900105
(10e)]
gi|417593799|ref|ZP_12244488.1| protein yhgF [Escherichia coli 2534-86]
gi|419199107|ref|ZP_13742400.1| protein yhgF [Escherichia coli DEC8A]
gi|419205396|ref|ZP_13748559.1| transcriptional accessory protein [Escherichia coli DEC8B]
gi|419211859|ref|ZP_13754925.1| transcriptional accessory protein [Escherichia coli DEC8C]
gi|419217795|ref|ZP_13760789.1| transcriptional accessory protein [Escherichia coli DEC8D]
gi|419229022|ref|ZP_13771861.1| transcriptional accessory protein [Escherichia coli DEC9A]
gi|419234540|ref|ZP_13777307.1| transcriptional accessory protein [Escherichia coli DEC9B]
gi|419239921|ref|ZP_13782627.1| transcriptional accessory protein [Escherichia coli DEC9C]
gi|419245464|ref|ZP_13788097.1| transcriptional accessory protein [Escherichia coli DEC9D]
gi|419251325|ref|ZP_13793892.1| transcriptional accessory protein [Escherichia coli DEC9E]
gi|419257016|ref|ZP_13799516.1| transcriptional accessory protein [Escherichia coli DEC10A]
gi|419275261|ref|ZP_13817544.1| transcriptional accessory protein [Escherichia coli DEC10D]
gi|419286314|ref|ZP_13828476.1| transcriptional accessory protein [Escherichia coli DEC10F]
gi|419878584|ref|ZP_14400050.1| putative transcriptional accessory protein [Escherichia coli
O111:H11 str. CVM9534]
gi|419881475|ref|ZP_14402796.1| putative transcriptional accessory protein [Escherichia coli
O111:H11 str. CVM9545]
gi|419888124|ref|ZP_14408654.1| putative transcriptional accessory protein [Escherichia coli
O111:H8 str. CVM9570]
gi|419896583|ref|ZP_14416257.1| putative transcriptional accessory protein [Escherichia coli
O111:H8 str. CVM9574]
gi|419902530|ref|ZP_14421734.1| putative transcriptional accessory protein [Escherichia coli
O26:H11 str. CVM9942]
gi|419907039|ref|ZP_14425896.1| putative transcriptional accessory protein [Escherichia coli
O26:H11 str. CVM10026]
gi|420090508|ref|ZP_14602277.1| putative transcriptional accessory protein [Escherichia coli
O111:H8 str. CVM9602]
gi|420096602|ref|ZP_14607971.1| putative transcriptional accessory protein [Escherichia coli
O111:H8 str. CVM9634]
gi|420100962|ref|ZP_14612098.1| putative transcriptional accessory protein [Escherichia coli
O111:H11 str. CVM9455]
gi|420108813|ref|ZP_14619024.1| putative transcriptional accessory protein [Escherichia coli
O111:H11 str. CVM9553]
gi|420116019|ref|ZP_14625485.1| putative transcriptional accessory protein [Escherichia coli
O26:H11 str. CVM10021]
gi|420121423|ref|ZP_14630522.1| putative transcriptional accessory protein [Escherichia coli
O26:H11 str. CVM10030]
gi|420125940|ref|ZP_14634709.1| transcriptional accessory protein [Escherichia coli O26:H11 str.
CVM10224]
gi|420132132|ref|ZP_14640513.1| putative transcriptional accessory protein [Escherichia coli
O26:H11 str. CVM9952]
gi|424748656|ref|ZP_18176796.1| transcriptional accessory protein [Escherichia coli O26:H11 str.
CFSAN001629]
gi|424767055|ref|ZP_18194392.1| transcriptional accessory protein [Escherichia coli O111:H11 str.
CFSAN001630]
gi|424770059|ref|ZP_18197275.1| transcriptional accessory protein [Escherichia coli O111:H8 str.
CFSAN001632]
gi|425381680|ref|ZP_18765674.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC1865]
gi|257756163|dbj|BAI27665.1| predicted transcriptional accessory protein [Escherichia coli
O26:H11 str. 11368]
gi|257766489|dbj|BAI37984.1| predicted transcriptional accessory protein [Escherichia coli
O111:H- str. 11128]
gi|323154240|gb|EFZ40443.1| protein yhgF [Escherichia coli EPECa14]
gi|323179068|gb|EFZ64642.1| protein yhgF [Escherichia coli OK1180]
gi|345333386|gb|EGW65837.1| protein yhgF [Escherichia coli 2534-86]
gi|378044064|gb|EHW06486.1| protein yhgF [Escherichia coli DEC8A]
gi|378044850|gb|EHW07260.1| transcriptional accessory protein [Escherichia coli DEC8B]
gi|378049647|gb|EHW11985.1| transcriptional accessory protein [Escherichia coli DEC8C]
gi|378058642|gb|EHW20850.1| transcriptional accessory protein [Escherichia coli DEC8D]
gi|378069493|gb|EHW31583.1| transcriptional accessory protein [Escherichia coli DEC9A]
gi|378074322|gb|EHW36359.1| transcriptional accessory protein [Escherichia coli DEC9B]
gi|378080367|gb|EHW42330.1| transcriptional accessory protein [Escherichia coli DEC9C]
gi|378087449|gb|EHW49309.1| transcriptional accessory protein [Escherichia coli DEC9D]
gi|378090706|gb|EHW52542.1| transcriptional accessory protein [Escherichia coli DEC9E]
gi|378097574|gb|EHW59326.1| transcriptional accessory protein [Escherichia coli DEC10A]
gi|378112362|gb|EHW73941.1| transcriptional accessory protein [Escherichia coli DEC10D]
gi|378126279|gb|EHW87674.1| transcriptional accessory protein [Escherichia coli DEC10F]
gi|386189190|gb|EIH77957.1| Tex-like protein N-terminal domain protein [Escherichia coli
4.0522]
gi|386195743|gb|EIH89978.1| Tex-like protein N-terminal domain protein [Escherichia coli
JB1-95]
gi|386260121|gb|EIJ15595.1| Tex-like protein N-terminal domain protein [Escherichia coli 900105
(10e)]
gi|388334671|gb|EIL01254.1| putative transcriptional accessory protein [Escherichia coli
O111:H11 str. CVM9534]
gi|388357354|gb|EIL21932.1| putative transcriptional accessory protein [Escherichia coli
O111:H8 str. CVM9574]
gi|388361061|gb|EIL25204.1| putative transcriptional accessory protein [Escherichia coli
O111:H8 str. CVM9570]
gi|388365092|gb|EIL28901.1| putative transcriptional accessory protein [Escherichia coli
O111:H11 str. CVM9545]
gi|388373724|gb|EIL36966.1| putative transcriptional accessory protein [Escherichia coli
O26:H11 str. CVM9942]
gi|388377959|gb|EIL40739.1| putative transcriptional accessory protein [Escherichia coli
O26:H11 str. CVM10026]
gi|394385917|gb|EJE63433.1| putative transcriptional accessory protein [Escherichia coli
O111:H8 str. CVM9602]
gi|394388413|gb|EJE65695.1| putative transcriptional accessory protein [Escherichia coli
O111:H8 str. CVM9634]
gi|394393713|gb|EJE70366.1| transcriptional accessory protein [Escherichia coli O26:H11 str.
CVM10224]
gi|394404856|gb|EJE80169.1| putative transcriptional accessory protein [Escherichia coli
O26:H11 str. CVM10021]
gi|394408629|gb|EJE83268.1| putative transcriptional accessory protein [Escherichia coli
O111:H11 str. CVM9553]
gi|394418484|gb|EJE92158.1| putative transcriptional accessory protein [Escherichia coli
O111:H11 str. CVM9455]
gi|394426004|gb|EJE98900.1| putative transcriptional accessory protein [Escherichia coli
O26:H11 str. CVM10030]
gi|394430354|gb|EJF02697.1| putative transcriptional accessory protein [Escherichia coli
O26:H11 str. CVM9952]
gi|408294186|gb|EKJ12597.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC1865]
gi|421933292|gb|EKT91085.1| transcriptional accessory protein [Escherichia coli O111:H11 str.
CFSAN001630]
gi|421943212|gb|EKU00504.1| transcriptional accessory protein [Escherichia coli O111:H8 str.
CFSAN001632]
gi|421944263|gb|EKU01524.1| transcriptional accessory protein [Escherichia coli O26:H11 str.
CFSAN001629]
Length = 773
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|168241644|ref|ZP_02666576.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|194449194|ref|YP_002047528.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|386593179|ref|YP_006089579.1| Transcription accessory protein (S1 RNA-binding domain) [Salmonella
enterica subsp. enterica serovar Heidelberg str. B182]
gi|419730748|ref|ZP_14257683.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41579]
gi|419734912|ref|ZP_14261796.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41563]
gi|419739127|ref|ZP_14265880.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41573]
gi|419743362|ref|ZP_14270027.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41566]
gi|419746514|ref|ZP_14273090.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41565]
gi|421571856|ref|ZP_16017524.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
gi|421575379|ref|ZP_16020992.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00325]
gi|421578984|ref|ZP_16024554.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00326]
gi|421586141|ref|ZP_16031624.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00328]
gi|194407498|gb|ACF67717.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|205339078|gb|EDZ25842.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|381293138|gb|EIC34310.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41579]
gi|381295733|gb|EIC36842.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41563]
gi|381300094|gb|EIC41159.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41573]
gi|381311847|gb|EIC52657.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41566]
gi|381320797|gb|EIC61325.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41565]
gi|383800220|gb|AFH47302.1| Transcription accessory protein (S1 RNA-binding domain) [Salmonella
enterica subsp. enterica serovar Heidelberg str. B182]
gi|402519411|gb|EJW26773.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
gi|402522419|gb|EJW29743.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00325]
gi|402522955|gb|EJW30274.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00326]
gi|402528866|gb|EJW36115.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00328]
Length = 776
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS FV D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|419223546|ref|ZP_13766458.1| transcriptional accessory protein [Escherichia coli DEC8E]
gi|378061987|gb|EHW24166.1| transcriptional accessory protein [Escherichia coli DEC8E]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|417725983|ref|ZP_12374762.1| protein yhgF [Shigella flexneri K-304]
gi|333012576|gb|EGK31957.1| protein yhgF [Shigella flexneri K-304]
Length = 834
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|378446880|ref|YP_005234512.1| putative transcription accessory protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. D23580]
gi|378452345|ref|YP_005239705.1| putative RNase R [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|378701398|ref|YP_005183356.1| putative transcription accessory protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. SL1344]
gi|378990809|ref|YP_005253973.1| putative RNase R [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
gi|16422063|gb|AAL22366.1| putative RNase R [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|261248659|emb|CBG26497.1| putative transcription accessory protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. D23580]
gi|267995724|gb|ACY90609.1| putative RNase R [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|301160047|emb|CBW19566.1| hypothetical transcription accessory protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. SL1344]
gi|332990356|gb|AEF09339.1| putative RNase R [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
Length = 775
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS FV D ++V G VKV+++
Sbjct: 646 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVL 705
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 706 EVDLQRKRIALTMR 719
>gi|336115414|ref|YP_004570181.1| RNA binding S1 domain-containing protein [Bacillus coagulans 2-6]
gi|335368844|gb|AEH54795.1| RNA binding S1 domain protein [Bacillus coagulans 2-6]
Length = 721
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 50/77 (64%)
Query: 140 VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
+K EDL PG G VR++ FGAF+D G DGLVH+S+LS FVK IVSVG V
Sbjct: 641 MKLEDLKPGMEMQGTVRNVVDFGAFVDVGVKEDGLVHISKLSKGFVKHPLDIVSVGDIVT 700
Query: 200 VRLIEANAETGRISLTM 216
V + + + + GR+SLTM
Sbjct: 701 VWVEKVDVQKGRLSLTM 717
Score = 42.7 bits (99), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP K+D MK G +++GTV+N+ GAF+ + E+G + S+ S
Sbjct: 625 RDPRDELPKPLLKKDIMKLEDLKPGMEMQGTVRNVVDFGAFVDVGVKEDGLVHISKLS-K 683
Query: 299 GFANMMGGSSLQVGQEVSVRV--LRISRGQVTLTM 331
GF + VG V+V V + + +G+++LTM
Sbjct: 684 GFVK-HPLDIVSVGDIVTVWVEKVDVQKGRLSLTM 717
>gi|417731111|ref|ZP_12379790.1| protein yhgF [Shigella flexneri K-671]
gi|332749494|gb|EGJ79911.1| protein yhgF [Shigella flexneri K-671]
Length = 833
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 646 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 705
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 706 EVDLQRKRIALTMR 719
>gi|417704661|ref|ZP_12353754.1| protein yhgF [Shigella flexneri K-218]
gi|417715140|ref|ZP_12364084.1| protein yhgF [Shigella flexneri K-272]
gi|417736017|ref|ZP_12384652.1| protein yhgF [Shigella flexneri 2747-71]
gi|417740987|ref|ZP_12389552.1| protein yhgF [Shigella flexneri 4343-70]
gi|417830505|ref|ZP_12477041.1| transcriptional accessory protein [Shigella flexneri J1713]
gi|418260199|ref|ZP_12882807.1| transcriptional accessory protein [Shigella flexneri 6603-63]
gi|420323164|ref|ZP_14824980.1| protein yhgF [Shigella flexneri 2850-71]
gi|332750344|gb|EGJ80755.1| protein yhgF [Shigella flexneri 4343-70]
gi|332751213|gb|EGJ81616.1| protein yhgF [Shigella flexneri 2747-71]
gi|332996645|gb|EGK16270.1| protein yhgF [Shigella flexneri K-272]
gi|332997185|gb|EGK16801.1| protein yhgF [Shigella flexneri K-218]
gi|335573160|gb|EGM59523.1| transcriptional accessory protein [Shigella flexneri J1713]
gi|391244114|gb|EIQ03401.1| protein yhgF [Shigella flexneri 2850-71]
gi|397893730|gb|EJL10185.1| transcriptional accessory protein [Shigella flexneri 6603-63]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|415858787|ref|ZP_11533239.1| protein yhgF [Shigella flexneri 2a str. 2457T]
gi|313647297|gb|EFS11749.1| protein yhgF [Shigella flexneri 2a str. 2457T]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|302879053|ref|YP_003847617.1| Tex-like protein [Gallionella capsiferriformans ES-2]
gi|302581842|gb|ADL55853.1| Tex-like protein-like [Gallionella capsiferriformans ES-2]
Length = 779
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 51/77 (66%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL P G V ++ FGAF+D G DGLVH+S L+++FVKD ++V GQ VKV
Sbjct: 656 KISDLQPDMILEGVVTNVAAFGAFVDIGVHQDGLVHISALANSFVKDPHTVVKAGQIVKV 715
Query: 201 RLIEANAETGRISLTMR 217
+++E + + RI+LTMR
Sbjct: 716 KVLEVDEKRKRIALTMR 732
>gi|417240609|ref|ZP_12036799.1| Tex-like protein N-terminal domain protein [Escherichia coli
9.0111]
gi|386212644|gb|EII23088.1| Tex-like protein N-terminal domain protein [Escherichia coli
9.0111]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|419263261|ref|ZP_13805668.1| transcriptional accessory protein [Escherichia coli DEC10B]
gi|419269245|ref|ZP_13811588.1| transcriptional accessory protein [Escherichia coli DEC10C]
gi|378102826|gb|EHW64498.1| transcriptional accessory protein [Escherichia coli DEC10B]
gi|378107634|gb|EHW69253.1| transcriptional accessory protein [Escherichia coli DEC10C]
Length = 777
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|416266157|ref|ZP_11641548.1| putative transcriptional accessory protein [Shigella dysenteriae
CDC 74-1112]
gi|420382359|ref|ZP_14881794.1| protein yhgF [Shigella dysenteriae 225-75]
gi|320175774|gb|EFW50860.1| putative transcriptional accessory protein [Shigella dysenteriae
CDC 74-1112]
gi|391298506|gb|EIQ56506.1| protein yhgF [Shigella dysenteriae 225-75]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|432448007|ref|ZP_19690303.1| protein yhgF [Escherichia coli KTE191]
gi|433025269|ref|ZP_20213241.1| protein yhgF [Escherichia coli KTE106]
gi|433324384|ref|ZP_20401680.1| transcriptional accessory protein [Escherichia coli J96]
gi|430971087|gb|ELC88109.1| protein yhgF [Escherichia coli KTE191]
gi|431531619|gb|ELI08276.1| protein yhgF [Escherichia coli KTE106]
gi|432347230|gb|ELL41693.1| transcriptional accessory protein [Escherichia coli J96]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|309785848|ref|ZP_07680479.1| protein yhgF [Shigella dysenteriae 1617]
gi|308926968|gb|EFP72444.1| protein yhgF [Shigella dysenteriae 1617]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|384544970|ref|YP_005729034.1| putative Transcriptional accessory protein [Shigella flexneri
2002017]
gi|420344549|ref|ZP_14846005.1| protein yhgF [Shigella flexneri K-404]
gi|281602757|gb|ADA75741.1| putative Transcriptional accessory protein [Shigella flexneri
2002017]
gi|391261234|gb|EIQ20283.1| protein yhgF [Shigella flexneri K-404]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|432662613|ref|ZP_19898247.1| protein yhgF [Escherichia coli KTE111]
gi|431197195|gb|ELE96061.1| protein yhgF [Escherichia coli KTE111]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|397660480|ref|YP_006501182.1| transcription accessory protein [Klebsiella oxytoca E718]
gi|394348497|gb|AFN34618.1| Transcription accessory protein (S1 RNA-binding domain) [Klebsiella
oxytoca E718]
Length = 804
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVM 706
Query: 204 EANAETGRISLTMR 217
E + RI+LTMR
Sbjct: 707 EVDLPRKRIALTMR 720
>gi|417336965|ref|ZP_12119274.1| Transcription accessory protein, partial [Salmonella enterica
subsp. enterica serovar Alachua str. R6-377]
gi|353566186|gb|EHC31742.1| Transcription accessory protein, partial [Salmonella enterica
subsp. enterica serovar Alachua str. R6-377]
Length = 381
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS FV D ++V G VKV+++
Sbjct: 296 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVL 355
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 356 EVDLQRKRIALTMR 369
>gi|383180570|ref|YP_005458575.1| putative transcriptional accessory protein [Shigella sonnei 53G]
gi|414578185|ref|ZP_11435356.1| protein yhgF [Shigella sonnei 3233-85]
gi|415851292|ref|ZP_11528041.1| protein yhgF [Shigella sonnei 53G]
gi|418268870|ref|ZP_12887539.1| transcriptional accessory protein [Shigella sonnei str. Moseley]
gi|420360754|ref|ZP_14861708.1| protein yhgF [Shigella sonnei 3226-85]
gi|420365268|ref|ZP_14866135.1| transcriptional accessory protein [Shigella sonnei 4822-66]
gi|323164969|gb|EFZ50760.1| protein yhgF [Shigella sonnei 53G]
gi|391278521|gb|EIQ37228.1| protein yhgF [Shigella sonnei 3226-85]
gi|391281705|gb|EIQ40344.1| protein yhgF [Shigella sonnei 3233-85]
gi|391292297|gb|EIQ50633.1| transcriptional accessory protein [Shigella sonnei 4822-66]
gi|397896546|gb|EJL12965.1| transcriptional accessory protein [Shigella sonnei str. Moseley]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|187777235|ref|ZP_02993708.1| hypothetical protein CLOSPO_00782 [Clostridium sporogenes ATCC
15579]
gi|187774163|gb|EDU37965.1| Tex-like protein N-terminal domain protein [Clostridium sporogenes
ATCC 15579]
Length = 718
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 50/74 (67%)
Query: 145 LIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIE 204
L P G VR++ FGAF+D G DGLVH+S+LSD+FVK +V VG V+VR++E
Sbjct: 645 LKPDMILMGTVRNVADFGAFVDIGVHQDGLVHISQLSDSFVKHPLDVVKVGDIVEVRILE 704
Query: 205 ANAETGRISLTMRE 218
+ + RISL+M++
Sbjct: 705 VDQKRNRISLSMKK 718
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP K + T+ L GTV+N+ GAF+ + ++G + S+ SD
Sbjct: 624 RDPREDLPKPILKTGIVDITQLKPDMILMGTVRNVADFGAFVDIGVHQDGLVHISQLSDS 683
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKK 333
+ + ++VG V VR+L + R +++L+MKK
Sbjct: 684 FVKHPL--DVVKVGDIVEVRILEVDQKRNRISLSMKK 718
>gi|110807239|ref|YP_690759.1| hypothetical protein SFV_3412 [Shigella flexneri 5 str. 8401]
gi|424839624|ref|ZP_18264261.1| hypothetical protein SF5M90T_3337 [Shigella flexneri 5a str. M90T]
gi|110616787|gb|ABF05454.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
gi|383468676|gb|EID63697.1| hypothetical protein SF5M90T_3337 [Shigella flexneri 5a str. M90T]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|419790538|ref|ZP_14316208.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. Levine 1]
gi|392613227|gb|EIW95687.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. Levine 1]
Length = 777
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS FV D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|420334178|ref|ZP_14835806.1| protein yhgF [Shigella flexneri K-1770]
gi|391243223|gb|EIQ02519.1| protein yhgF [Shigella flexneri K-1770]
Length = 834
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|417344308|ref|ZP_12124683.1| Transcription accessory protein, partial [Salmonella enterica
subsp. enterica serovar Baildon str. R6-199]
gi|357954333|gb|EHJ80556.1| Transcription accessory protein, partial [Salmonella enterica
subsp. enterica serovar Baildon str. R6-199]
Length = 733
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS FV D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|347539415|ref|YP_004846840.1| transcriptional accessory protein [Pseudogulbenkiania sp. NH8B]
gi|345642593|dbj|BAK76426.1| transcriptional accessory protein [Pseudogulbenkiania sp. NH8B]
Length = 767
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 51/80 (63%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL+PG G V ++ FGAF+D G DGLVH+S LS+ F+ D +V G VKV++
Sbjct: 647 KDLVPGMVLEGVVTNVTNFGAFVDVGVHQDGLVHISALSNKFIDDPRKVVKAGDVVKVKV 706
Query: 203 IEANAETGRISLTMRESDDI 222
E + + RI+LTMR D++
Sbjct: 707 QEVDVKRRRIALTMRLDDEV 726
Score = 43.1 bits (100), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 21/109 (19%)
Query: 247 KPGQK-RDEMKTTKF----------VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT F V G LEG V N+T GAF+ + ++G + S
Sbjct: 625 KPGRDPRPEFKTATFQEGVEDLKDLVPGMVLEGVVTNVTNFGAFVDVGVHQDGLVHISAL 684
Query: 296 S----DDGFANMMGGSSLQVG-QEVSVRVLRISRGQVTLTMKKEDDVGS 339
S DD + G ++V QEV V+ R ++ LTM+ +D+VG+
Sbjct: 685 SNKFIDDPRKVVKAGDVVKVKVQEVDVK-----RRRIALTMRLDDEVGA 728
>gi|168465228|ref|ZP_02699120.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|418762169|ref|ZP_13318302.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35185]
gi|418768006|ref|ZP_13324062.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35199]
gi|418769118|ref|ZP_13325153.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21539]
gi|418774172|ref|ZP_13330143.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 33953]
gi|418780855|ref|ZP_13336743.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35188]
gi|418784257|ref|ZP_13340095.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21559]
gi|418804398|ref|ZP_13360003.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35202]
gi|419794980|ref|ZP_14320586.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. Levine 15]
gi|195632126|gb|EDX50610.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|392613688|gb|EIW96143.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. Levine 15]
gi|392732796|gb|EIZ90003.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35199]
gi|392737878|gb|EIZ95030.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35185]
gi|392740555|gb|EIZ97674.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21539]
gi|392748805|gb|EJA05786.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35188]
gi|392751674|gb|EJA08622.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 33953]
gi|392754601|gb|EJA11517.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21559]
gi|392770555|gb|EJA27280.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35202]
Length = 777
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS FV D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|83950988|ref|ZP_00959721.1| S1 RNA binding domain protein [Roseovarius nubinhibens ISM]
gi|83838887|gb|EAP78183.1| S1 RNA binding domain protein [Roseovarius nubinhibens ISM]
Length = 794
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 48/75 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG + G V ++ FGAF+D G DGLVHVS+L+D FVKD +V G V+VR+
Sbjct: 645 DLKPGMSLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVRVRVT 704
Query: 204 EANAETGRISLTMRE 218
E + RI L+MR+
Sbjct: 705 EIDVPRKRIGLSMRK 719
Score = 39.3 bits (90), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R KT F +G D LEGTV N+ GAF+ + +
Sbjct: 613 VRDILAELEKPGRDPRPSFKTASFAEGIDSITDLKPGMSLEGTVTNVAAFGAFVDIGVHQ 672
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRV--LRISRGQVTLTMKKE 334
+G + S+ +D + ++ G V VRV + + R ++ L+M+KE
Sbjct: 673 DGLVHVSQLADRFVKDPH--EVVKAGDVVRVRVTEIDVPRKRIGLSMRKE 720
>gi|82778776|ref|YP_405125.1| hypothetical protein SDY_3669 [Shigella dysenteriae Sd197]
gi|81242924|gb|ABB63634.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
Length = 740
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 614 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 673
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 674 EVDLQRKRIALTMR 687
>gi|427806600|ref|ZP_18973667.1| hypothetical protein BN16_40391 [Escherichia coli chi7122]
gi|427811188|ref|ZP_18978253.1| hypothetical protein BN17_33421 [Escherichia coli]
gi|412964782|emb|CCK48711.1| hypothetical protein BN16_40391 [Escherichia coli chi7122]
gi|412971367|emb|CCJ46024.1| hypothetical protein BN17_33421 [Escherichia coli]
Length = 740
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 614 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 673
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 674 EVDLQRKRIALTMR 687
>gi|390957104|ref|YP_006420861.1| transcriptional accessory protein [Terriglobus roseus DSM 18391]
gi|390412022|gb|AFL87526.1| transcriptional accessory protein [Terriglobus roseus DSM 18391]
Length = 751
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 58/94 (61%), Gaps = 6/94 (6%)
Query: 130 RTARKSEMPPVKNE------DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDN 183
R R + + P NE D++PG G V ++ FGAF+D G DGLVH+S +S+
Sbjct: 621 RDPRDTFVAPTFNEAVRDLADVVPGMVLEGVVSNVTKFGAFVDVGVHQDGLVHISEISNR 680
Query: 184 FVKDVGSIVSVGQEVKVRLIEANAETGRISLTMR 217
F+KD ++ GQ VKV+++ A+ +T RI+L+++
Sbjct: 681 FIKDASEVLKAGQIVKVKVLSADIKTKRIALSIK 714
>gi|303252099|ref|ZP_07338268.1| transcriptional accessory protein [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|307248294|ref|ZP_07530320.1| hypothetical protein appser2_12730 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|302649081|gb|EFL79268.1| transcriptional accessory protein [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|306855228|gb|EFM87405.1| hypothetical protein appser2_12730 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
Length = 775
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 51/78 (65%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL G G V ++ FGAF+D G DGLVH+S LS++FV+D +V VG VKV++
Sbjct: 653 KDLKVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHKVVKVGDLVKVKV 712
Query: 203 IEANAETGRISLTMRESD 220
+E + + RI+LTMR D
Sbjct: 713 LEVDVQRKRIALTMRLED 730
Score = 42.4 bits (98), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 15/102 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT F+ G + LEGTV N+ GAF+ + ++G + S
Sbjct: 631 KPGRDPRGEFKTATFMDGVEDIKDLKVGMILEGTVTNVANFGAFVDIGVHQDGLVHISML 690
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKED 335
S+ + ++VG V V+VL + R ++ LTM+ ED
Sbjct: 691 SNSFVED--PHKVVKVGDLVKVKVLEVDVQRKRIALTMRLED 730
>gi|387609099|ref|YP_006097955.1| putative transcription accessory protein [Escherichia coli 042]
gi|422333742|ref|ZP_16414751.1| protein yhgF [Escherichia coli 4_1_47FAA]
gi|432491163|ref|ZP_19733026.1| protein yhgF [Escherichia coli KTE213]
gi|432841190|ref|ZP_20074649.1| protein yhgF [Escherichia coli KTE140]
gi|433205108|ref|ZP_20388857.1| protein yhgF [Escherichia coli KTE95]
gi|284923399|emb|CBG36493.1| putative transcription accessory protein [Escherichia coli 042]
gi|373245174|gb|EHP64646.1| protein yhgF [Escherichia coli 4_1_47FAA]
gi|431018311|gb|ELD31747.1| protein yhgF [Escherichia coli KTE213]
gi|431386422|gb|ELG70378.1| protein yhgF [Escherichia coli KTE140]
gi|431716746|gb|ELJ80852.1| protein yhgF [Escherichia coli KTE95]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|432865450|ref|ZP_20088547.1| protein yhgF [Escherichia coli KTE146]
gi|431402196|gb|ELG85509.1| protein yhgF [Escherichia coli KTE146]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|432477716|ref|ZP_19719705.1| protein yhgF [Escherichia coli KTE208]
gi|431002323|gb|ELD17836.1| protein yhgF [Escherichia coli KTE208]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|74313910|ref|YP_312329.1| hypothetical protein SSON_3538 [Shigella sonnei Ss046]
gi|73857387|gb|AAZ90094.1| conserved hypothetical protein [Shigella sonnei Ss046]
Length = 740
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 614 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 673
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 674 EVDLQRKRIALTMR 687
>gi|26250008|ref|NP_756048.1| hypothetical protein c4184 [Escherichia coli CFT073]
gi|227883541|ref|ZP_04001346.1| transcription accessory protein [Escherichia coli 83972]
gi|300985365|ref|ZP_07177421.1| S1 RNA binding domain protein [Escherichia coli MS 45-1]
gi|301050382|ref|ZP_07197270.1| S1 RNA binding domain protein [Escherichia coli MS 185-1]
gi|386631290|ref|YP_006151010.1| hypothetical protein i02_3855 [Escherichia coli str. 'clone D i2']
gi|386636210|ref|YP_006155929.1| hypothetical protein i14_3855 [Escherichia coli str. 'clone D i14']
gi|386641001|ref|YP_006107799.1| putative transcriptional accessory protein [Escherichia coli ABU
83972]
gi|422365630|ref|ZP_16446123.1| S1 RNA binding domain protein [Escherichia coli MS 153-1]
gi|432413626|ref|ZP_19656280.1| protein yhgF [Escherichia coli KTE39]
gi|432433615|ref|ZP_19676039.1| protein yhgF [Escherichia coli KTE187]
gi|432438212|ref|ZP_19680595.1| protein yhgF [Escherichia coli KTE188]
gi|432458525|ref|ZP_19700701.1| protein yhgF [Escherichia coli KTE201]
gi|432497518|ref|ZP_19739310.1| protein yhgF [Escherichia coli KTE214]
gi|432506276|ref|ZP_19747995.1| protein yhgF [Escherichia coli KTE220]
gi|432525731|ref|ZP_19762849.1| protein yhgF [Escherichia coli KTE230]
gi|432570632|ref|ZP_19807138.1| protein yhgF [Escherichia coli KTE53]
gi|432594598|ref|ZP_19830910.1| protein yhgF [Escherichia coli KTE60]
gi|432609438|ref|ZP_19845619.1| protein yhgF [Escherichia coli KTE67]
gi|432652996|ref|ZP_19888741.1| protein yhgF [Escherichia coli KTE87]
gi|432785370|ref|ZP_20019547.1| protein yhgF [Escherichia coli KTE63]
gi|432846482|ref|ZP_20079124.1| protein yhgF [Escherichia coli KTE141]
gi|432975605|ref|ZP_20164439.1| protein yhgF [Escherichia coli KTE209]
gi|432997165|ref|ZP_20185747.1| protein yhgF [Escherichia coli KTE218]
gi|433001762|ref|ZP_20190280.1| protein yhgF [Escherichia coli KTE223]
gi|433059887|ref|ZP_20246922.1| protein yhgF [Escherichia coli KTE124]
gi|433089062|ref|ZP_20275424.1| protein yhgF [Escherichia coli KTE137]
gi|433117282|ref|ZP_20303066.1| protein yhgF [Escherichia coli KTE153]
gi|433126971|ref|ZP_20312516.1| protein yhgF [Escherichia coli KTE160]
gi|433141035|ref|ZP_20326279.1| protein yhgF [Escherichia coli KTE167]
gi|433151040|ref|ZP_20336039.1| protein yhgF [Escherichia coli KTE174]
gi|433209527|ref|ZP_20393193.1| protein yhgF [Escherichia coli KTE97]
gi|433214379|ref|ZP_20397960.1| protein yhgF [Escherichia coli KTE99]
gi|442604055|ref|ZP_21018903.1| Transcription accessory protein (S1 RNA-binding domain)
[Escherichia coli Nissle 1917]
gi|26110437|gb|AAN82622.1|AE016768_40 Protein yhgF [Escherichia coli CFT073]
gi|227839420|gb|EEJ49886.1| transcription accessory protein [Escherichia coli 83972]
gi|300297908|gb|EFJ54293.1| S1 RNA binding domain protein [Escherichia coli MS 185-1]
gi|300408106|gb|EFJ91644.1| S1 RNA binding domain protein [Escherichia coli MS 45-1]
gi|307555493|gb|ADN48268.1| putative transcriptional accessory protein [Escherichia coli ABU
83972]
gi|315291752|gb|EFU51108.1| S1 RNA binding domain protein [Escherichia coli MS 153-1]
gi|355422189|gb|AER86386.1| hypothetical protein i02_3855 [Escherichia coli str. 'clone D i2']
gi|355427109|gb|AER91305.1| hypothetical protein i14_3855 [Escherichia coli str. 'clone D i14']
gi|430933455|gb|ELC53861.1| protein yhgF [Escherichia coli KTE39]
gi|430950790|gb|ELC70018.1| protein yhgF [Escherichia coli KTE187]
gi|430960766|gb|ELC78817.1| protein yhgF [Escherichia coli KTE188]
gi|430979983|gb|ELC96747.1| protein yhgF [Escherichia coli KTE201]
gi|431021053|gb|ELD34382.1| protein yhgF [Escherichia coli KTE214]
gi|431035624|gb|ELD47007.1| protein yhgF [Escherichia coli KTE220]
gi|431048842|gb|ELD58810.1| protein yhgF [Escherichia coli KTE230]
gi|431097705|gb|ELE03032.1| protein yhgF [Escherichia coli KTE53]
gi|431126055|gb|ELE28409.1| protein yhgF [Escherichia coli KTE60]
gi|431135749|gb|ELE37624.1| protein yhgF [Escherichia coli KTE67]
gi|431187411|gb|ELE86912.1| protein yhgF [Escherichia coli KTE87]
gi|431326449|gb|ELG13795.1| protein yhgF [Escherichia coli KTE63]
gi|431392717|gb|ELG76288.1| protein yhgF [Escherichia coli KTE141]
gi|431486419|gb|ELH66069.1| protein yhgF [Escherichia coli KTE209]
gi|431502763|gb|ELH81648.1| protein yhgF [Escherichia coli KTE218]
gi|431504744|gb|ELH83368.1| protein yhgF [Escherichia coli KTE223]
gi|431566529|gb|ELI39552.1| protein yhgF [Escherichia coli KTE124]
gi|431601683|gb|ELI71194.1| protein yhgF [Escherichia coli KTE137]
gi|431631343|gb|ELI99655.1| protein yhgF [Escherichia coli KTE153]
gi|431641244|gb|ELJ08987.1| protein yhgF [Escherichia coli KTE160]
gi|431656691|gb|ELJ23666.1| protein yhgF [Escherichia coli KTE167]
gi|431667629|gb|ELJ34209.1| protein yhgF [Escherichia coli KTE174]
gi|431728402|gb|ELJ92082.1| protein yhgF [Escherichia coli KTE97]
gi|431732379|gb|ELJ95834.1| protein yhgF [Escherichia coli KTE99]
gi|441715100|emb|CCQ04880.1| Transcription accessory protein (S1 RNA-binding domain)
[Escherichia coli Nissle 1917]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|420338874|ref|ZP_14840427.1| protein yhgF [Shigella flexneri K-315]
gi|391257596|gb|EIQ16708.1| protein yhgF [Shigella flexneri K-315]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|419155883|ref|ZP_13700439.1| protein yhgF [Escherichia coli DEC6C]
gi|377993560|gb|EHV56692.1| protein yhgF [Escherichia coli DEC6C]
Length = 787
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|300937295|ref|ZP_07152137.1| S1 RNA binding domain protein [Escherichia coli MS 21-1]
gi|432682122|ref|ZP_19917480.1| protein yhgF [Escherichia coli KTE143]
gi|300457644|gb|EFK21137.1| S1 RNA binding domain protein [Escherichia coli MS 21-1]
gi|431217669|gb|ELF15235.1| protein yhgF [Escherichia coli KTE143]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|218691684|ref|YP_002399896.1| transcriptional accessory protein [Escherichia coli ED1a]
gi|218429248|emb|CAR10058.1| transcriptional accessory protein [Escherichia coli ED1a]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|82545762|ref|YP_409709.1| hypothetical protein SBO_3394 [Shigella boydii Sb227]
gi|81247173|gb|ABB67881.1| conserved hypothetical protein [Shigella boydii Sb227]
Length = 740
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 614 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 673
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 674 EVDLQRKRIALTMR 687
>gi|419702230|ref|ZP_14229825.1| putative transcriptional accessory protein [Escherichia coli
SCI-07]
gi|380346519|gb|EIA34812.1| putative transcriptional accessory protein [Escherichia coli
SCI-07]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|347530860|ref|YP_004837623.1| transcription accessory protein [Roseburia hominis A2-183]
gi|345501008|gb|AEN95691.1| transcription accessory protein [Roseburia hominis A2-183]
Length = 715
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 50/75 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G VR++ FGAF+D G DGLVH+S++SD F+K +VSVG V+V++
Sbjct: 638 KDLTPGMILKGTVRNVIDFGAFVDIGVHQDGLVHISQMSDKFIKHPLEVVSVGDIVEVKV 697
Query: 203 IEANAETGRISLTMR 217
+ + + RI LTM+
Sbjct: 698 LSVDPKKQRIQLTMK 712
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP + D ++ G L+GTV+N+ GAF+ + ++G + S+ SD
Sbjct: 619 RDPREDMPKPILRSDVLEIKDLTPGMILKGTVRNVIDFGAFVDIGVHQDGLVHISQMSDK 678
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMK 332
+ + + VG V V+VL + + ++ LTMK
Sbjct: 679 FIKHPL--EVVSVGDIVEVKVLSVDPKKQRIQLTMK 712
>gi|417710179|ref|ZP_12359193.1| protein yhgF [Shigella flexneri VA-6]
gi|332996405|gb|EGK16032.1| protein yhgF [Shigella flexneri VA-6]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|331665012|ref|ZP_08365913.1| protein YhgF [Escherichia coli TA143]
gi|432767752|ref|ZP_20002145.1| protein yhgF [Escherichia coli KTE50]
gi|432963909|ref|ZP_20153256.1| protein yhgF [Escherichia coli KTE202]
gi|433064836|ref|ZP_20251745.1| protein yhgF [Escherichia coli KTE125]
gi|331057522|gb|EGI29508.1| protein YhgF [Escherichia coli TA143]
gi|431322171|gb|ELG09759.1| protein yhgF [Escherichia coli KTE50]
gi|431470436|gb|ELH50358.1| protein yhgF [Escherichia coli KTE202]
gi|431578689|gb|ELI51282.1| protein yhgF [Escherichia coli KTE125]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|433200149|ref|ZP_20384035.1| protein yhgF [Escherichia coli KTE94]
gi|431717893|gb|ELJ81975.1| protein yhgF [Escherichia coli KTE94]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|410629374|ref|ZP_11340078.1| hypothetical protein GMES_4581 [Glaciecola mesophila KMM 241]
gi|410151170|dbj|GAC26847.1| hypothetical protein GMES_4581 [Glaciecola mesophila KMM 241]
Length = 775
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL G G V ++ FGAF+D G DGLVH+S ++D ++ D IV G VKV+++
Sbjct: 645 DLKEGMILEGVVSNVANFGAFVDVGVHQDGLVHISAMTDKYISDPREIVKTGDIVKVKVM 704
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKR 252
E + R+S TMR +DDI+ Q S + R + R + KP K+
Sbjct: 705 EVDVARQRVSFTMRLNDDINTKPNQSRGN-SDNNPRQSNRPSGKPQNKK 752
Score = 39.3 bits (90), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 15/106 (14%)
Query: 247 KPGQK-RDEMKTTKFVKG----------QDLEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT F +G LEG V N+ GAF+ + ++G + S
Sbjct: 622 KPGRDPRPEFKTATFKEGVSSLNDLKEGMILEGVVSNVANFGAFVDVGVHQDGLVHISAM 681
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKEDDVGS 339
+D ++ ++ G V V+V+ ++R +V+ TM+ DD+ +
Sbjct: 682 TDKYISD--PREIVKTGDIVKVKVMEVDVARQRVSFTMRLNDDINT 725
>gi|420349384|ref|ZP_14850762.1| protein yhgF [Shigella boydii 965-58]
gi|391266478|gb|EIQ25428.1| protein yhgF [Shigella boydii 965-58]
Length = 787
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|424546540|ref|ZP_17988903.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC4402]
gi|424577571|ref|ZP_18017616.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC1845]
gi|424583390|ref|ZP_18023029.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC1863]
gi|425152243|ref|ZP_18551849.1| protein yhgF [Escherichia coli 88.0221]
gi|425158118|ref|ZP_18557374.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA34]
gi|425319397|ref|ZP_18708177.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC1736]
gi|390867780|gb|EIP29552.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC4402]
gi|390916555|gb|EIP75007.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC1863]
gi|390917482|gb|EIP75905.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC1845]
gi|408067344|gb|EKH01786.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA34]
gi|408236078|gb|EKI58998.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC1736]
gi|408594284|gb|EKK68570.1| protein yhgF [Escherichia coli 88.0221]
Length = 772
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 646 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 705
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 706 EVDLQRKRIALTMR 719
>gi|416899782|ref|ZP_11929188.1| protein yhgF [Escherichia coli STEC_7v]
gi|327251042|gb|EGE62735.1| protein yhgF [Escherichia coli STEC_7v]
Length = 780
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|419921394|ref|ZP_14439449.1| putative transcriptional accessory protein [Escherichia coli
541-15]
gi|388397784|gb|EIL58746.1| putative transcriptional accessory protein [Escherichia coli
541-15]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|293412824|ref|ZP_06655492.1| conserved hypothetical protein [Escherichia coli B354]
gi|291468471|gb|EFF10964.1| conserved hypothetical protein [Escherichia coli B354]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|168747115|ref|ZP_02772137.1| putative transcriptional accessory protein [Escherichia coli
O157:H7 str. EC4113]
gi|168753160|ref|ZP_02778167.1| putative transcriptional accessory protein [Escherichia coli
O157:H7 str. EC4401]
gi|168765755|ref|ZP_02790762.1| putative transcriptional accessory protein [Escherichia coli
O157:H7 str. EC4486]
gi|168772701|ref|ZP_02797708.1| putative transcriptional accessory protein [Escherichia coli
O157:H7 str. EC4196]
gi|168779491|ref|ZP_02804498.1| putative transcriptional accessory protein [Escherichia coli
O157:H7 str. EC4076]
gi|168797178|ref|ZP_02822185.1| putative transcriptional accessory protein [Escherichia coli
O157:H7 str. EC508]
gi|195934896|ref|ZP_03080278.1| S1 RNA-binding domain-containing protein [Escherichia coli O157:H7
str. EC4024]
gi|208807890|ref|ZP_03250227.1| putative transcriptional accessory protein [Escherichia coli
O157:H7 str. EC4206]
gi|208814038|ref|ZP_03255367.1| putative transcriptional accessory protein [Escherichia coli
O157:H7 str. EC4045]
gi|208820215|ref|ZP_03260535.1| putative transcriptional accessory protein [Escherichia coli
O157:H7 str. EC4042]
gi|209398543|ref|YP_002272842.1| transcriptional accessory protein [Escherichia coli O157:H7 str.
EC4115]
gi|254795322|ref|YP_003080159.1| transcriptional accessory protein [Escherichia coli O157:H7 str.
TW14359]
gi|416326528|ref|ZP_11666737.1| putative transcriptional accessory protein [Escherichia coli
O157:H7 str. 1125]
gi|419071582|ref|ZP_13617191.1| transcriptional accessory protein [Escherichia coli DEC3E]
gi|419088459|ref|ZP_13633810.1| transcriptional accessory protein [Escherichia coli DEC4B]
gi|420317194|ref|ZP_14819066.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC1734]
gi|424117878|ref|ZP_17851707.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA3]
gi|424130213|ref|ZP_17863112.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA9]
gi|424155338|ref|ZP_17886266.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA24]
gi|424255325|ref|ZP_17891814.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA25]
gi|424333813|ref|ZP_17897722.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA28]
gi|424464428|ref|ZP_17914795.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA39]
gi|424482994|ref|ZP_17931966.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli TW07945]
gi|424489176|ref|ZP_17937718.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli TW09098]
gi|424502526|ref|ZP_17949408.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC4203]
gi|424508780|ref|ZP_17955157.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC4196]
gi|424516134|ref|ZP_17960761.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli TW14313]
gi|424540408|ref|ZP_17983344.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC4013]
gi|424552762|ref|ZP_17994598.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC4439]
gi|424558948|ref|ZP_18000350.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC4436]
gi|424565286|ref|ZP_18006282.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC4437]
gi|424571416|ref|ZP_18011956.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC4448]
gi|425133840|ref|ZP_18534682.1| protein yhgF [Escherichia coli 8.2524]
gi|425140416|ref|ZP_18540789.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli 10.0833]
gi|425313420|ref|ZP_18702591.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC1735]
gi|425325499|ref|ZP_18713846.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC1737]
gi|425331864|ref|ZP_18719692.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC1846]
gi|425338041|ref|ZP_18725389.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC1847]
gi|425344354|ref|ZP_18731236.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC1848]
gi|425350154|ref|ZP_18736613.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC1849]
gi|425356462|ref|ZP_18742521.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC1850]
gi|425362424|ref|ZP_18748062.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC1856]
gi|425368639|ref|ZP_18753754.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC1862]
gi|425374957|ref|ZP_18759590.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC1864]
gi|425387844|ref|ZP_18771395.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC1866]
gi|425394497|ref|ZP_18777598.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC1868]
gi|425400635|ref|ZP_18783332.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC1869]
gi|425406725|ref|ZP_18788939.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC1870]
gi|429057584|ref|ZP_19121859.1| protein yhgF [Escherichia coli 97.1742]
gi|429075207|ref|ZP_19138453.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli 99.0678]
gi|444932653|ref|ZP_21251672.1| protein yhgF [Escherichia coli 99.0814]
gi|444938091|ref|ZP_21256844.1| protein yhgF [Escherichia coli 99.0815]
gi|444943703|ref|ZP_21262202.1| protein yhgF [Escherichia coli 99.0816]
gi|444949235|ref|ZP_21267533.1| protein yhgF [Escherichia coli 99.0839]
gi|444954842|ref|ZP_21272916.1| protein yhgF [Escherichia coli 99.0848]
gi|444992830|ref|ZP_21309467.1| protein yhgF [Escherichia coli PA19]
gi|444998067|ref|ZP_21314561.1| protein yhgF [Escherichia coli PA13]
gi|445003699|ref|ZP_21320082.1| protein yhgF [Escherichia coli PA2]
gi|445009071|ref|ZP_21325305.1| protein yhgF [Escherichia coli PA47]
gi|445020112|ref|ZP_21336072.1| protein yhgF [Escherichia coli PA8]
gi|445036344|ref|ZP_21351866.1| protein yhgF [Escherichia coli 99.1762]
gi|445041964|ref|ZP_21357330.1| protein yhgF [Escherichia coli PA35]
gi|452968626|ref|ZP_21966853.1| transcription accessory protein [Escherichia coli O157:H7 str.
EC4009]
gi|187771459|gb|EDU35303.1| putative transcriptional accessory protein [Escherichia coli
O157:H7 str. EC4196]
gi|188018336|gb|EDU56458.1| putative transcriptional accessory protein [Escherichia coli
O157:H7 str. EC4113]
gi|189002506|gb|EDU71492.1| putative transcriptional accessory protein [Escherichia coli
O157:H7 str. EC4076]
gi|189359374|gb|EDU77793.1| putative transcriptional accessory protein [Escherichia coli
O157:H7 str. EC4401]
gi|189364528|gb|EDU82947.1| putative transcriptional accessory protein [Escherichia coli
O157:H7 str. EC4486]
gi|189380095|gb|EDU98511.1| putative transcriptional accessory protein [Escherichia coli
O157:H7 str. EC508]
gi|208727691|gb|EDZ77292.1| putative transcriptional accessory protein [Escherichia coli
O157:H7 str. EC4206]
gi|208735315|gb|EDZ84002.1| putative transcriptional accessory protein [Escherichia coli
O157:H7 str. EC4045]
gi|208740338|gb|EDZ88020.1| putative transcriptional accessory protein [Escherichia coli
O157:H7 str. EC4042]
gi|209159943|gb|ACI37376.1| putative transcriptional accessory protein [Escherichia coli
O157:H7 str. EC4115]
gi|254594722|gb|ACT74083.1| predicted transcriptional accessory protein [Escherichia coli
O157:H7 str. TW14359]
gi|326344619|gb|EGD68368.1| putative transcriptional accessory protein [Escherichia coli
O157:H7 str. 1125]
gi|377908659|gb|EHU72870.1| transcriptional accessory protein [Escherichia coli DEC3E]
gi|377927521|gb|EHU91436.1| transcriptional accessory protein [Escherichia coli DEC4B]
gi|390675023|gb|EIN51187.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA3]
gi|390681841|gb|EIN57625.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA9]
gi|390719072|gb|EIN91806.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA25]
gi|390720844|gb|EIN93550.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA24]
gi|390725258|gb|EIN97778.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA28]
gi|390762988|gb|EIO32239.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA39]
gi|390787046|gb|EIO54544.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli TW07945]
gi|390802098|gb|EIO69147.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli TW09098]
gi|390823530|gb|EIO89579.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC4203]
gi|390828398|gb|EIO94064.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC4196]
gi|390842807|gb|EIP06643.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli TW14313]
gi|390863257|gb|EIP25398.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC4013]
gi|390876035|gb|EIP37030.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC4439]
gi|390881479|gb|EIP42069.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC4436]
gi|390891140|gb|EIP50777.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC4437]
gi|390893402|gb|EIP52964.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC4448]
gi|390906405|gb|EIP65296.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC1734]
gi|408224744|gb|EKI48448.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC1735]
gi|408239819|gb|EKI62557.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC1737]
gi|408244411|gb|EKI66849.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC1846]
gi|408253175|gb|EKI74788.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC1847]
gi|408256939|gb|EKI78293.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC1848]
gi|408263639|gb|EKI84483.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC1849]
gi|408272110|gb|EKI92217.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC1850]
gi|408274788|gb|EKI94774.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC1856]
gi|408283474|gb|EKJ02648.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC1862]
gi|408289191|gb|EKJ07965.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC1864]
gi|408305061|gb|EKJ22469.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC1868]
gi|408305780|gb|EKJ23170.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC1866]
gi|408316638|gb|EKJ32898.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC1869]
gi|408322094|gb|EKJ38089.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC1870]
gi|408576465|gb|EKK52057.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli 10.0833]
gi|408579227|gb|EKK54697.1| protein yhgF [Escherichia coli 8.2524]
gi|427309010|gb|EKW71338.1| protein yhgF [Escherichia coli 97.1742]
gi|427325690|gb|EKW87124.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli 99.0678]
gi|444535971|gb|ELV16019.1| protein yhgF [Escherichia coli 99.0814]
gi|444546141|gb|ELV24917.1| protein yhgF [Escherichia coli 99.0815]
gi|444555458|gb|ELV32927.1| protein yhgF [Escherichia coli 99.0839]
gi|444555872|gb|ELV33315.1| protein yhgF [Escherichia coli 99.0816]
gi|444560671|gb|ELV37820.1| protein yhgF [Escherichia coli 99.0848]
gi|444604175|gb|ELV78850.1| protein yhgF [Escherichia coli PA13]
gi|444604754|gb|ELV79417.1| protein yhgF [Escherichia coli PA19]
gi|444613172|gb|ELV87435.1| protein yhgF [Escherichia coli PA2]
gi|444620877|gb|ELV94869.1| protein yhgF [Escherichia coli PA47]
gi|444627586|gb|ELW01344.1| protein yhgF [Escherichia coli PA8]
gi|444642996|gb|ELW16167.1| protein yhgF [Escherichia coli 99.1762]
gi|444652394|gb|ELW25155.1| protein yhgF [Escherichia coli PA35]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|170683595|ref|YP_001745655.1| putative transcriptional accessory protein [Escherichia coli
SMS-3-5]
gi|170521313|gb|ACB19491.1| putative transcriptional accessory protein [Escherichia coli
SMS-3-5]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|437219611|ref|ZP_20712918.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13183-1]
gi|435201455|gb|ELN85364.1| transcriptional accessory protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13183-1]
Length = 132
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS+ FV D ++V G VKV+++
Sbjct: 3 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVDDPHTVVKAGDIVKVKVL 62
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 63 EVDLQRKRIALTMR 76
>gi|436760578|ref|ZP_20520487.1| putative transcriptional accessory protein, partial [Salmonella
enterica subsp. enterica serovar Enteritidis str.
SE30663]
gi|434966267|gb|ELL59147.1| putative transcriptional accessory protein, partial [Salmonella
enterica subsp. enterica serovar Enteritidis str.
SE30663]
Length = 171
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS+ FV D ++V G VKV+++
Sbjct: 42 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVDDPHTVVKAGDIVKVKVL 101
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 102 EVDLQRKRIALTMR 115
>gi|417281942|ref|ZP_12069242.1| Tex-like protein N-terminal domain protein [Escherichia coli 3003]
gi|425279782|ref|ZP_18671006.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli ARS4.2123]
gi|386246271|gb|EII88001.1| Tex-like protein N-terminal domain protein [Escherichia coli 3003]
gi|408198681|gb|EKI23904.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli ARS4.2123]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|417127355|ref|ZP_11974846.1| Tex-like protein N-terminal domain protein [Escherichia coli
97.0246]
gi|386144658|gb|EIG91124.1| Tex-like protein N-terminal domain protein [Escherichia coli
97.0246]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|419020414|ref|ZP_13567712.1| transcriptional accessory protein [Escherichia coli DEC1E]
gi|377857199|gb|EHU22053.1| transcriptional accessory protein [Escherichia coli DEC1E]
Length = 772
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 646 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 705
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 706 EVDLQRKRIALTMR 719
>gi|422793456|ref|ZP_16846152.1| tex protein containing protein [Escherichia coli TA007]
gi|323970005|gb|EGB65280.1| tex protein containing protein [Escherichia coli TA007]
Length = 815
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|416333968|ref|ZP_11671035.1| putative transcriptional accessory protein [Escherichia coli
WV_060327]
gi|320197365|gb|EFW71980.1| putative transcriptional accessory protein [Escherichia coli
WV_060327]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|312968283|ref|ZP_07782493.1| protein yhgF [Escherichia coli 2362-75]
gi|417757735|ref|ZP_12405800.1| transcriptional accessory protein [Escherichia coli DEC2B]
gi|418998736|ref|ZP_13546319.1| transcriptional accessory protein [Escherichia coli DEC1A]
gi|419004111|ref|ZP_13551623.1| transcriptional accessory protein [Escherichia coli DEC1B]
gi|419009783|ref|ZP_13557201.1| transcriptional accessory protein [Escherichia coli DEC1C]
gi|419015424|ref|ZP_13562762.1| protein yhgF [Escherichia coli DEC1D]
gi|419025879|ref|ZP_13573097.1| protein yhgF [Escherichia coli DEC2A]
gi|419031009|ref|ZP_13578156.1| transcriptional accessory protein [Escherichia coli DEC2C]
gi|419036718|ref|ZP_13583793.1| transcriptional accessory protein [Escherichia coli DEC2D]
gi|419041714|ref|ZP_13588731.1| transcriptional accessory protein [Escherichia coli DEC2E]
gi|312287108|gb|EFR15018.1| protein yhgF [Escherichia coli 2362-75]
gi|377840180|gb|EHU05255.1| transcriptional accessory protein [Escherichia coli DEC1A]
gi|377840560|gb|EHU05632.1| transcriptional accessory protein [Escherichia coli DEC1C]
gi|377843117|gb|EHU08158.1| transcriptional accessory protein [Escherichia coli DEC1B]
gi|377853778|gb|EHU18669.1| protein yhgF [Escherichia coli DEC1D]
gi|377859843|gb|EHU24671.1| protein yhgF [Escherichia coli DEC2A]
gi|377871386|gb|EHU36050.1| transcriptional accessory protein [Escherichia coli DEC2B]
gi|377873679|gb|EHU38311.1| transcriptional accessory protein [Escherichia coli DEC2C]
gi|377875540|gb|EHU40150.1| transcriptional accessory protein [Escherichia coli DEC2D]
gi|377886426|gb|EHU50907.1| transcriptional accessory protein [Escherichia coli DEC2E]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|387831282|ref|YP_003351219.1| hypothetical protein ECSF_3229 [Escherichia coli SE15]
gi|281180439|dbj|BAI56769.1| conserved hypothetical protein [Escherichia coli SE15]
Length = 740
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 614 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 673
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 674 EVDLQRKRIALTMR 687
>gi|260426043|ref|ZP_05780022.1| protein tex [Citreicella sp. SE45]
gi|260420535|gb|EEX13786.1| protein tex [Citreicella sp. SE45]
Length = 786
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 47/75 (62%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVHVS+L+D FVKD +V G V+VR+
Sbjct: 644 DLRPGMMLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVRVRVT 703
Query: 204 EANAETGRISLTMRE 218
E + RI L+MR+
Sbjct: 704 EVDVPRKRIGLSMRK 718
>gi|91212882|ref|YP_542868.1| hypothetical protein UTI89_C3908 [Escherichia coli UTI89]
gi|117625674|ref|YP_858997.1| transcriptional accessory protein [Escherichia coli APEC O1]
gi|218560465|ref|YP_002393378.1| transcriptional accessory protein [Escherichia coli S88]
gi|237703137|ref|ZP_04533618.1| yhgF [Escherichia sp. 3_2_53FAA]
gi|386601420|ref|YP_006102926.1| protein yhgF [Escherichia coli IHE3034]
gi|386605984|ref|YP_006112284.1| putative transcriptional accessory protein [Escherichia coli UM146]
gi|417087148|ref|ZP_11954195.1| S1 RNA binding domain protein [Escherichia coli cloneA_i1]
gi|419944078|ref|ZP_14460589.1| putative transcriptional accessory protein [Escherichia coli HM605]
gi|422360141|ref|ZP_16440778.1| S1 RNA binding domain protein [Escherichia coli MS 110-3]
gi|422751245|ref|ZP_16805154.1| tex protein containing protein [Escherichia coli H252]
gi|422756943|ref|ZP_16810765.1| tex protein containing protein [Escherichia coli H263]
gi|422841411|ref|ZP_16889380.1| yhgF [Escherichia coli H397]
gi|432359851|ref|ZP_19603064.1| protein yhgF [Escherichia coli KTE4]
gi|432364648|ref|ZP_19607803.1| protein yhgF [Escherichia coli KTE5]
gi|432575635|ref|ZP_19812106.1| protein yhgF [Escherichia coli KTE55]
gi|432589780|ref|ZP_19826132.1| protein yhgF [Escherichia coli KTE58]
gi|432599649|ref|ZP_19835919.1| protein yhgF [Escherichia coli KTE62]
gi|432756330|ref|ZP_19990874.1| protein yhgF [Escherichia coli KTE22]
gi|432780410|ref|ZP_20014630.1| protein yhgF [Escherichia coli KTE59]
gi|432789403|ref|ZP_20023530.1| protein yhgF [Escherichia coli KTE65]
gi|432822839|ref|ZP_20056527.1| protein yhgF [Escherichia coli KTE118]
gi|432824292|ref|ZP_20057962.1| protein yhgF [Escherichia coli KTE123]
gi|433006983|ref|ZP_20195406.1| protein yhgF [Escherichia coli KTE227]
gi|433009599|ref|ZP_20198011.1| protein yhgF [Escherichia coli KTE229]
gi|433155550|ref|ZP_20340481.1| protein yhgF [Escherichia coli KTE176]
gi|433165392|ref|ZP_20350121.1| protein yhgF [Escherichia coli KTE179]
gi|433170390|ref|ZP_20355009.1| protein yhgF [Escherichia coli KTE180]
gi|91074456|gb|ABE09337.1| hypothetical protein YhgF [Escherichia coli UTI89]
gi|115514798|gb|ABJ02873.1| putative transcriptional accessory protein [Escherichia coli APEC
O1]
gi|218367234|emb|CAR05008.1| transcriptional accessory protein [Escherichia coli S88]
gi|226902401|gb|EEH88660.1| yhgF [Escherichia sp. 3_2_53FAA]
gi|294493847|gb|ADE92603.1| protein yhgF [Escherichia coli IHE3034]
gi|307628468|gb|ADN72772.1| putative transcriptional accessory protein [Escherichia coli UM146]
gi|315286094|gb|EFU45532.1| S1 RNA binding domain protein [Escherichia coli MS 110-3]
gi|323950064|gb|EGB45947.1| tex protein containing protein [Escherichia coli H252]
gi|323954656|gb|EGB50438.1| tex protein containing protein [Escherichia coli H263]
gi|355350068|gb|EHF99269.1| S1 RNA binding domain protein [Escherichia coli cloneA_i1]
gi|371604663|gb|EHN93290.1| yhgF [Escherichia coli H397]
gi|388419695|gb|EIL79414.1| putative transcriptional accessory protein [Escherichia coli HM605]
gi|430874160|gb|ELB97725.1| protein yhgF [Escherichia coli KTE4]
gi|430883499|gb|ELC06493.1| protein yhgF [Escherichia coli KTE5]
gi|431104916|gb|ELE09280.1| protein yhgF [Escherichia coli KTE55]
gi|431117909|gb|ELE21133.1| protein yhgF [Escherichia coli KTE58]
gi|431128465|gb|ELE30649.1| protein yhgF [Escherichia coli KTE62]
gi|431299871|gb|ELF89437.1| protein yhgF [Escherichia coli KTE22]
gi|431324802|gb|ELG12218.1| protein yhgF [Escherichia coli KTE59]
gi|431335283|gb|ELG22423.1| protein yhgF [Escherichia coli KTE65]
gi|431365572|gb|ELG52077.1| protein yhgF [Escherichia coli KTE118]
gi|431378817|gb|ELG63808.1| protein yhgF [Escherichia coli KTE123]
gi|431510430|gb|ELH88675.1| protein yhgF [Escherichia coli KTE227]
gi|431521525|gb|ELH98770.1| protein yhgF [Escherichia coli KTE229]
gi|431670981|gb|ELJ37272.1| protein yhgF [Escherichia coli KTE176]
gi|431684205|gb|ELJ49817.1| protein yhgF [Escherichia coli KTE179]
gi|431684557|gb|ELJ50163.1| protein yhgF [Escherichia coli KTE180]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|227504779|ref|ZP_03934828.1| transcription accessory protein [Corynebacterium striatum ATCC
6940]
gi|227198629|gb|EEI78677.1| transcription accessory protein [Corynebacterium striatum ATCC
6940]
Length = 768
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 51/81 (62%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL+PG G V ++ FGAF+D G DGLVHVS +S+ F+ D +V GQ VKV
Sbjct: 634 KVSDLVPGMILEGTVTNVAAFGAFVDVGVHQDGLVHVSAMSNKFISDPHEVVRSGQVVKV 693
Query: 201 RLIEANAETGRISLTMRESDD 221
+++E + + RI L++R D+
Sbjct: 694 KVMEVDVQRQRIGLSLRLDDE 714
>gi|432545121|ref|ZP_19781955.1| protein yhgF [Escherichia coli KTE236]
gi|432550603|ref|ZP_19787362.1| protein yhgF [Escherichia coli KTE237]
gi|432623746|ref|ZP_19859763.1| protein yhgF [Escherichia coli KTE76]
gi|432817152|ref|ZP_20050912.1| protein yhgF [Escherichia coli KTE115]
gi|431071948|gb|ELD79705.1| protein yhgF [Escherichia coli KTE236]
gi|431077505|gb|ELD84756.1| protein yhgF [Escherichia coli KTE237]
gi|431156674|gb|ELE57341.1| protein yhgF [Escherichia coli KTE76]
gi|431361555|gb|ELG48136.1| protein yhgF [Escherichia coli KTE115]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|432389156|ref|ZP_19632036.1| protein yhgF [Escherichia coli KTE16]
gi|432515793|ref|ZP_19753008.1| protein yhgF [Escherichia coli KTE224]
gi|432700919|ref|ZP_19936063.1| protein yhgF [Escherichia coli KTE169]
gi|432747381|ref|ZP_19982042.1| protein yhgF [Escherichia coli KTE43]
gi|433146008|ref|ZP_20331140.1| protein yhgF [Escherichia coli KTE168]
gi|430904626|gb|ELC26335.1| protein yhgF [Escherichia coli KTE16]
gi|431038488|gb|ELD49384.1| protein yhgF [Escherichia coli KTE224]
gi|431240030|gb|ELF34492.1| protein yhgF [Escherichia coli KTE169]
gi|431289281|gb|ELF80022.1| protein yhgF [Escherichia coli KTE43]
gi|431658475|gb|ELJ25388.1| protein yhgF [Escherichia coli KTE168]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|425302256|ref|ZP_18692137.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli 07798]
gi|432467714|ref|ZP_19709792.1| protein yhgF [Escherichia coli KTE205]
gi|432584928|ref|ZP_19821319.1| protein yhgF [Escherichia coli KTE57]
gi|433074655|ref|ZP_20261295.1| protein yhgF [Escherichia coli KTE129]
gi|433122012|ref|ZP_20307670.1| protein yhgF [Escherichia coli KTE157]
gi|433185118|ref|ZP_20369354.1| protein yhgF [Escherichia coli KTE85]
gi|408211143|gb|EKI35696.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli 07798]
gi|430991334|gb|ELD07738.1| protein yhgF [Escherichia coli KTE205]
gi|431114828|gb|ELE18355.1| protein yhgF [Escherichia coli KTE57]
gi|431583895|gb|ELI55883.1| protein yhgF [Escherichia coli KTE129]
gi|431639278|gb|ELJ07141.1| protein yhgF [Escherichia coli KTE157]
gi|431702756|gb|ELJ67551.1| protein yhgF [Escherichia coli KTE85]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|422830434|ref|ZP_16878592.1| yhgF [Escherichia coli B093]
gi|371605128|gb|EHN93748.1| yhgF [Escherichia coli B093]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|422974058|ref|ZP_16976155.1| protein yhgF [Escherichia coli TA124]
gi|432854807|ref|ZP_20083078.1| protein yhgF [Escherichia coli KTE144]
gi|371596035|gb|EHN84878.1| protein yhgF [Escherichia coli TA124]
gi|431397889|gb|ELG81321.1| protein yhgF [Escherichia coli KTE144]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|417598792|ref|ZP_12249418.1| protein yhgF [Escherichia coli 3030-1]
gi|419371978|ref|ZP_13913087.1| protein yhgF [Escherichia coli DEC14A]
gi|419388100|ref|ZP_13928968.1| transcriptional accessory protein [Escherichia coli DEC14D]
gi|345349381|gb|EGW81666.1| protein yhgF [Escherichia coli 3030-1]
gi|378213605|gb|EHX73917.1| protein yhgF [Escherichia coli DEC14A]
gi|378228655|gb|EHX88806.1| transcriptional accessory protein [Escherichia coli DEC14D]
Length = 777
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|209756502|gb|ACI76563.1| hypothetical protein ECs4249 [Escherichia coli]
gi|209756506|gb|ACI76565.1| hypothetical protein ECs4249 [Escherichia coli]
Length = 740
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 614 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 673
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 674 EVDLQRKRIALTMR 687
>gi|215488688|ref|YP_002331119.1| transcriptional accessory protein [Escherichia coli O127:H6 str.
E2348/69]
gi|215266760|emb|CAS11200.1| predicted transcriptional accessory protein [Escherichia coli
O127:H6 str. E2348/69]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|15803911|ref|NP_289947.1| hypothetical protein Z4762 [Escherichia coli O157:H7 str. EDL933]
gi|15833503|ref|NP_312276.1| hypothetical protein ECs4249 [Escherichia coli O157:H7 str. Sakai]
gi|387884556|ref|YP_006314858.1| hypothetical protein CDCO157_3990 [Escherichia coli Xuzhou21]
gi|12518037|gb|AAG58508.1|AE005563_2 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
gi|13363723|dbj|BAB37672.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|209756500|gb|ACI76562.1| hypothetical protein ECs4249 [Escherichia coli]
gi|386798014|gb|AFJ31048.1| hypothetical protein CDCO157_3990 [Escherichia coli Xuzhou21]
Length = 740
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 614 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 673
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 674 EVDLQRKRIALTMR 687
>gi|432555488|ref|ZP_19792206.1| protein yhgF [Escherichia coli KTE47]
gi|431081132|gb|ELD87911.1| protein yhgF [Escherichia coli KTE47]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|86604252|gb|ABD13904.1| transcriptional accessory protein [Lactobacillus reuteri]
Length = 725
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 82/163 (50%), Gaps = 15/163 (9%)
Query: 69 HKSALHIISATGINVAVEESDSPAADDDSAGASDIPSDVETSESSSIKSEASPTLAESRR 128
++ A II GINV +E +P+ADD DV+ + +E + S +
Sbjct: 568 YQVAEKIIQPAGINV--DELGTPSADDKLKKI-----DVKQFTDDQVGTEPVTDIISSLQ 620
Query: 129 S--RTARKSEMPPVKN------EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRL 180
R R S P+ EDL PG G VR++ FG F+D G DGLVHVS++
Sbjct: 621 KPGRHLRDSMPAPLLRHDVMTIEDLKPGMKLQGTVRNVVDFGVFVDIGVKHDGLVHVSKM 680
Query: 181 SDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDIS 223
S F++D ++V+VG V V + + + + RI LTM E + ++
Sbjct: 681 SKQFIRDPRAMVAVGDIVDVWIDDVDLKRQRIQLTMLEPETVT 723
>gi|222158104|ref|YP_002558243.1| Protein yhgF [Escherichia coli LF82]
gi|387618694|ref|YP_006121716.1| transcriptional accessory protein [Escherichia coli O83:H1 str. NRG
857C]
gi|222035109|emb|CAP77854.1| Protein yhgF [Escherichia coli LF82]
gi|312947955|gb|ADR28782.1| transcriptional accessory protein [Escherichia coli O83:H1 str. NRG
857C]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|432618641|ref|ZP_19854745.1| protein yhgF [Escherichia coli KTE75]
gi|431151692|gb|ELE52705.1| protein yhgF [Escherichia coli KTE75]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|415839017|ref|ZP_11520835.1| protein yhgF [Escherichia coli RN587/1]
gi|323189004|gb|EFZ74288.1| protein yhgF [Escherichia coli RN587/1]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|387614082|ref|YP_006117198.1| putative transcription accessory protein [Escherichia coli ETEC
H10407]
gi|309703818|emb|CBJ03159.1| putative transcription accessory protein [Escherichia coli ETEC
H10407]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|209756498|gb|ACI76561.1| hypothetical protein ECs4249 [Escherichia coli]
gi|209756504|gb|ACI76564.1| hypothetical protein ECs4249 [Escherichia coli]
Length = 740
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 614 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 673
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 674 EVDLQRKRIALTMR 687
>gi|218706998|ref|YP_002414517.1| transcriptional accessory protein [Escherichia coli UMN026]
gi|293406985|ref|ZP_06650909.1| yhgF [Escherichia coli FVEC1412]
gi|298382727|ref|ZP_06992322.1| yhgF [Escherichia coli FVEC1302]
gi|300898905|ref|ZP_07117205.1| S1 RNA binding domain protein [Escherichia coli MS 198-1]
gi|417588492|ref|ZP_12239255.1| protein yhgF [Escherichia coli STEC_C165-02]
gi|419933903|ref|ZP_14451050.1| putative transcriptional accessory protein [Escherichia coli 576-1]
gi|432355382|ref|ZP_19598649.1| protein yhgF [Escherichia coli KTE2]
gi|432403757|ref|ZP_19646501.1| protein yhgF [Escherichia coli KTE26]
gi|432428018|ref|ZP_19670501.1| protein yhgF [Escherichia coli KTE181]
gi|432462722|ref|ZP_19704855.1| protein yhgF [Escherichia coli KTE204]
gi|432519576|ref|ZP_19756755.1| protein yhgF [Escherichia coli KTE228]
gi|432539734|ref|ZP_19776627.1| protein yhgF [Escherichia coli KTE235]
gi|432633254|ref|ZP_19869174.1| protein yhgF [Escherichia coli KTE80]
gi|432642944|ref|ZP_19878769.1| protein yhgF [Escherichia coli KTE83]
gi|432667941|ref|ZP_19903513.1| protein yhgF [Escherichia coli KTE116]
gi|432772135|ref|ZP_20006449.1| protein yhgF [Escherichia coli KTE54]
gi|432870893|ref|ZP_20091313.1| protein yhgF [Escherichia coli KTE147]
gi|432888720|ref|ZP_20102433.1| protein yhgF [Escherichia coli KTE158]
gi|432914959|ref|ZP_20120286.1| protein yhgF [Escherichia coli KTE190]
gi|433020531|ref|ZP_20208675.1| protein yhgF [Escherichia coli KTE105]
gi|433055014|ref|ZP_20242179.1| protein yhgF [Escherichia coli KTE122]
gi|433069705|ref|ZP_20256477.1| protein yhgF [Escherichia coli KTE128]
gi|433160491|ref|ZP_20345316.1| protein yhgF [Escherichia coli KTE177]
gi|433180211|ref|ZP_20364595.1| protein yhgF [Escherichia coli KTE82]
gi|218434095|emb|CAR15012.1| transcriptional accessory protein [Escherichia coli UMN026]
gi|291425796|gb|EFE98830.1| yhgF [Escherichia coli FVEC1412]
gi|298276563|gb|EFI18081.1| yhgF [Escherichia coli FVEC1302]
gi|300357457|gb|EFJ73327.1| S1 RNA binding domain protein [Escherichia coli MS 198-1]
gi|345332565|gb|EGW65021.1| protein yhgF [Escherichia coli STEC_C165-02]
gi|388410067|gb|EIL70327.1| putative transcriptional accessory protein [Escherichia coli 576-1]
gi|430872853|gb|ELB96433.1| protein yhgF [Escherichia coli KTE2]
gi|430923170|gb|ELC43907.1| protein yhgF [Escherichia coli KTE26]
gi|430951856|gb|ELC71064.1| protein yhgF [Escherichia coli KTE181]
gi|430985985|gb|ELD02568.1| protein yhgF [Escherichia coli KTE204]
gi|431047828|gb|ELD57813.1| protein yhgF [Escherichia coli KTE228]
gi|431067150|gb|ELD75759.1| protein yhgF [Escherichia coli KTE235]
gi|431167437|gb|ELE67702.1| protein yhgF [Escherichia coli KTE80]
gi|431177710|gb|ELE77624.1| protein yhgF [Escherichia coli KTE83]
gi|431197772|gb|ELE96599.1| protein yhgF [Escherichia coli KTE116]
gi|431324126|gb|ELG11582.1| protein yhgF [Escherichia coli KTE54]
gi|431408878|gb|ELG92060.1| protein yhgF [Escherichia coli KTE147]
gi|431414073|gb|ELG96822.1| protein yhgF [Escherichia coli KTE158]
gi|431436027|gb|ELH17634.1| protein yhgF [Escherichia coli KTE190]
gi|431527532|gb|ELI04247.1| protein yhgF [Escherichia coli KTE105]
gi|431567157|gb|ELI40170.1| protein yhgF [Escherichia coli KTE122]
gi|431579833|gb|ELI52404.1| protein yhgF [Escherichia coli KTE128]
gi|431674539|gb|ELJ40700.1| protein yhgF [Escherichia coli KTE177]
gi|431698365|gb|ELJ63414.1| protein yhgF [Escherichia coli KTE82]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|110643640|ref|YP_671370.1| S1 RNA-binding domain-containing protein [Escherichia coli 536]
gi|191171603|ref|ZP_03033151.1| putative transcriptional accessory protein [Escherichia coli F11]
gi|300987292|ref|ZP_07178100.1| S1 RNA binding domain protein [Escherichia coli MS 200-1]
gi|419912367|ref|ZP_14430822.1| putative transcriptional accessory protein [Escherichia coli KD1]
gi|422374058|ref|ZP_16454352.1| S1 RNA binding domain protein [Escherichia coli MS 60-1]
gi|422379350|ref|ZP_16459546.1| S1 RNA binding domain protein [Escherichia coli MS 57-2]
gi|432472751|ref|ZP_19714788.1| protein yhgF [Escherichia coli KTE206]
gi|432715256|ref|ZP_19950282.1| protein yhgF [Escherichia coli KTE8]
gi|432734153|ref|ZP_19968977.1| protein yhgF [Escherichia coli KTE45]
gi|432761238|ref|ZP_19995728.1| protein yhgF [Escherichia coli KTE46]
gi|432803572|ref|ZP_20037524.1| protein yhgF [Escherichia coli KTE84]
gi|433079592|ref|ZP_20266110.1| protein yhgF [Escherichia coli KTE131]
gi|110345232|gb|ABG71469.1| protein YhgF (S1 RNA binding domain) [Escherichia coli 536]
gi|190908230|gb|EDV67821.1| putative transcriptional accessory protein [Escherichia coli F11]
gi|300306160|gb|EFJ60680.1| S1 RNA binding domain protein [Escherichia coli MS 200-1]
gi|324009384|gb|EGB78603.1| S1 RNA binding domain protein [Escherichia coli MS 57-2]
gi|324014587|gb|EGB83806.1| S1 RNA binding domain protein [Escherichia coli MS 60-1]
gi|388391769|gb|EIL53214.1| putative transcriptional accessory protein [Escherichia coli KD1]
gi|430995742|gb|ELD12032.1| protein yhgF [Escherichia coli KTE206]
gi|431252477|gb|ELF45992.1| protein yhgF [Escherichia coli KTE8]
gi|431272046|gb|ELF63164.1| protein yhgF [Escherichia coli KTE45]
gi|431306545|gb|ELF94858.1| protein yhgF [Escherichia coli KTE46]
gi|431346111|gb|ELG33024.1| protein yhgF [Escherichia coli KTE84]
gi|431594179|gb|ELI64462.1| protein yhgF [Escherichia coli KTE131]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|417286095|ref|ZP_12073386.1| Tex-like protein N-terminal domain protein [Escherichia coli
TW07793]
gi|386251336|gb|EII97503.1| Tex-like protein N-terminal domain protein [Escherichia coli
TW07793]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|417228431|ref|ZP_12030189.1| Tex-like protein N-terminal domain protein [Escherichia coli
5.0959]
gi|386207766|gb|EII12271.1| Tex-like protein N-terminal domain protein [Escherichia coli
5.0959]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|218697090|ref|YP_002404757.1| transcriptional accessory protein [Escherichia coli 55989]
gi|407471358|ref|YP_006782199.1| transcriptional accessory protein [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407479986|ref|YP_006777135.1| putative transcriptional accessory protein [Escherichia coli
O104:H4 str. 2011C-3493]
gi|410480547|ref|YP_006768093.1| transcriptional accessory protein [Escherichia coli O104:H4 str.
2009EL-2050]
gi|417807041|ref|ZP_12453973.1| putative transcriptional accessory protein [Escherichia coli
O104:H4 str. LB226692]
gi|417834781|ref|ZP_12481223.1| putative transcriptional accessory protein [Escherichia coli
O104:H4 str. 01-09591]
gi|417866509|ref|ZP_12511550.1| hypothetical protein C22711_3438 [Escherichia coli O104:H4 str.
C227-11]
gi|422989586|ref|ZP_16980358.1| protein yhgF [Escherichia coli O104:H4 str. C227-11]
gi|422996481|ref|ZP_16987244.1| protein yhgF [Escherichia coli O104:H4 str. C236-11]
gi|423001631|ref|ZP_16992384.1| protein yhgF [Escherichia coli O104:H4 str. 09-7901]
gi|423005290|ref|ZP_16996035.1| protein yhgF [Escherichia coli O104:H4 str. 04-8351]
gi|423011796|ref|ZP_17002528.1| protein yhgF [Escherichia coli O104:H4 str. 11-3677]
gi|423021023|ref|ZP_17011730.1| protein yhgF [Escherichia coli O104:H4 str. 11-4404]
gi|423026188|ref|ZP_17016883.1| protein yhgF [Escherichia coli O104:H4 str. 11-4522]
gi|423032007|ref|ZP_17022693.1| protein yhgF [Escherichia coli O104:H4 str. 11-4623]
gi|423034879|ref|ZP_17025557.1| protein yhgF [Escherichia coli O104:H4 str. 11-4632 C1]
gi|423040007|ref|ZP_17030676.1| protein yhgF [Escherichia coli O104:H4 str. 11-4632 C2]
gi|423046691|ref|ZP_17037350.1| protein yhgF [Escherichia coli O104:H4 str. 11-4632 C3]
gi|423055228|ref|ZP_17044034.1| protein yhgF [Escherichia coli O104:H4 str. 11-4632 C4]
gi|423057220|ref|ZP_17046019.1| protein yhgF [Escherichia coli O104:H4 str. 11-4632 C5]
gi|429721052|ref|ZP_19255973.1| protein yhgF [Escherichia coli O104:H4 str. Ec11-9450]
gi|429772949|ref|ZP_19304967.1| protein yhgF [Escherichia coli O104:H4 str. 11-02030]
gi|429778315|ref|ZP_19310283.1| protein yhgF [Escherichia coli O104:H4 str. 11-02033-1]
gi|429786621|ref|ZP_19318514.1| protein yhgF [Escherichia coli O104:H4 str. 11-02092]
gi|429787565|ref|ZP_19319455.1| protein yhgF [Escherichia coli O104:H4 str. 11-02093]
gi|429793361|ref|ZP_19325207.1| protein yhgF [Escherichia coli O104:H4 str. 11-02281]
gi|429799941|ref|ZP_19331734.1| protein yhgF [Escherichia coli O104:H4 str. 11-02318]
gi|429803556|ref|ZP_19335314.1| protein yhgF [Escherichia coli O104:H4 str. 11-02913]
gi|429808197|ref|ZP_19339917.1| protein yhgF [Escherichia coli O104:H4 str. 11-03439]
gi|429813897|ref|ZP_19345573.1| protein yhgF [Escherichia coli O104:H4 str. 11-04080]
gi|429819107|ref|ZP_19350739.1| protein yhgF [Escherichia coli O104:H4 str. 11-03943]
gi|429905456|ref|ZP_19371432.1| protein yhgF [Escherichia coli O104:H4 str. Ec11-9990]
gi|429909593|ref|ZP_19375555.1| protein yhgF [Escherichia coli O104:H4 str. Ec11-9941]
gi|429915463|ref|ZP_19381409.1| protein yhgF [Escherichia coli O104:H4 str. Ec11-4984]
gi|429920510|ref|ZP_19386437.1| protein yhgF [Escherichia coli O104:H4 str. Ec11-5604]
gi|429926314|ref|ZP_19392225.1| protein yhgF [Escherichia coli O104:H4 str. Ec11-4986]
gi|429930249|ref|ZP_19396149.1| protein yhgF [Escherichia coli O104:H4 str. Ec11-4987]
gi|429936787|ref|ZP_19402672.1| protein yhgF [Escherichia coli O104:H4 str. Ec11-4988]
gi|429942469|ref|ZP_19408341.1| protein yhgF [Escherichia coli O104:H4 str. Ec11-5603]
gi|429945152|ref|ZP_19411012.1| protein yhgF [Escherichia coli O104:H4 str. Ec11-6006]
gi|429952707|ref|ZP_19418552.1| protein yhgF [Escherichia coli O104:H4 str. Ec12-0465]
gi|429956062|ref|ZP_19421892.1| protein yhgF [Escherichia coli O104:H4 str. Ec12-0466]
gi|218353822|emb|CAV00175.1| transcriptional accessory protein [Escherichia coli 55989]
gi|340732925|gb|EGR62061.1| putative transcriptional accessory protein [Escherichia coli
O104:H4 str. 01-09591]
gi|340738498|gb|EGR72747.1| putative transcriptional accessory protein [Escherichia coli
O104:H4 str. LB226692]
gi|341919798|gb|EGT69408.1| hypothetical protein C22711_3438 [Escherichia coli O104:H4 str.
C227-11]
gi|354858721|gb|EHF19170.1| protein yhgF [Escherichia coli O104:H4 str. C236-11]
gi|354863175|gb|EHF23609.1| protein yhgF [Escherichia coli O104:H4 str. C227-11]
gi|354864065|gb|EHF24495.1| protein yhgF [Escherichia coli O104:H4 str. 04-8351]
gi|354871210|gb|EHF31608.1| protein yhgF [Escherichia coli O104:H4 str. 09-7901]
gi|354877748|gb|EHF38106.1| protein yhgF [Escherichia coli O104:H4 str. 11-3677]
gi|354886649|gb|EHF46931.1| protein yhgF [Escherichia coli O104:H4 str. 11-4404]
gi|354890541|gb|EHF50780.1| protein yhgF [Escherichia coli O104:H4 str. 11-4522]
gi|354894862|gb|EHF55052.1| protein yhgF [Escherichia coli O104:H4 str. 11-4623]
gi|354906667|gb|EHF66741.1| protein yhgF [Escherichia coli O104:H4 str. 11-4632 C1]
gi|354909310|gb|EHF69343.1| protein yhgF [Escherichia coli O104:H4 str. 11-4632 C2]
gi|354911295|gb|EHF71300.1| protein yhgF [Escherichia coli O104:H4 str. 11-4632 C3]
gi|354914068|gb|EHF74053.1| protein yhgF [Escherichia coli O104:H4 str. 11-4632 C4]
gi|354921746|gb|EHF81667.1| protein yhgF [Escherichia coli O104:H4 str. 11-4632 C5]
gi|406775709|gb|AFS55133.1| putative transcriptional accessory protein [Escherichia coli
O104:H4 str. 2009EL-2050]
gi|407052283|gb|AFS72334.1| putative transcriptional accessory protein [Escherichia coli
O104:H4 str. 2011C-3493]
gi|407067393|gb|AFS88440.1| putative transcriptional accessory protein [Escherichia coli
O104:H4 str. 2009EL-2071]
gi|429346793|gb|EKY83572.1| protein yhgF [Escherichia coli O104:H4 str. 11-02092]
gi|429356772|gb|EKY93447.1| protein yhgF [Escherichia coli O104:H4 str. 11-02033-1]
gi|429357647|gb|EKY94320.1| protein yhgF [Escherichia coli O104:H4 str. 11-02030]
gi|429372939|gb|EKZ09488.1| protein yhgF [Escherichia coli O104:H4 str. 11-02093]
gi|429374880|gb|EKZ11419.1| protein yhgF [Escherichia coli O104:H4 str. 11-02281]
gi|429377510|gb|EKZ14031.1| protein yhgF [Escherichia coli O104:H4 str. 11-02318]
gi|429388742|gb|EKZ25167.1| protein yhgF [Escherichia coli O104:H4 str. 11-02913]
gi|429391511|gb|EKZ27915.1| protein yhgF [Escherichia coli O104:H4 str. 11-03439]
gi|429392520|gb|EKZ28921.1| protein yhgF [Escherichia coli O104:H4 str. 11-03943]
gi|429402041|gb|EKZ38334.1| protein yhgF [Escherichia coli O104:H4 str. 11-04080]
gi|429403094|gb|EKZ39379.1| protein yhgF [Escherichia coli O104:H4 str. Ec11-9990]
gi|429406721|gb|EKZ42976.1| protein yhgF [Escherichia coli O104:H4 str. Ec11-9450]
gi|429414762|gb|EKZ50936.1| protein yhgF [Escherichia coli O104:H4 str. Ec11-4984]
gi|429418232|gb|EKZ54378.1| protein yhgF [Escherichia coli O104:H4 str. Ec11-4986]
gi|429424524|gb|EKZ60625.1| protein yhgF [Escherichia coli O104:H4 str. Ec11-4987]
gi|429428327|gb|EKZ64403.1| protein yhgF [Escherichia coli O104:H4 str. Ec11-4988]
gi|429433384|gb|EKZ69417.1| protein yhgF [Escherichia coli O104:H4 str. Ec11-5603]
gi|429440344|gb|EKZ76322.1| protein yhgF [Escherichia coli O104:H4 str. Ec11-5604]
gi|429445242|gb|EKZ81184.1| protein yhgF [Escherichia coli O104:H4 str. Ec12-0465]
gi|429449183|gb|EKZ85085.1| protein yhgF [Escherichia coli O104:H4 str. Ec11-6006]
gi|429454834|gb|EKZ90692.1| protein yhgF [Escherichia coli O104:H4 str. Ec12-0466]
gi|429458941|gb|EKZ94761.1| protein yhgF [Escherichia coli O104:H4 str. Ec11-9941]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|163848394|ref|YP_001636438.1| RNA-binding S1 domain-containing protein [Chloroflexus aurantiacus
J-10-fl]
gi|222526319|ref|YP_002570790.1| RNA binding S1 domain-containing protein [Chloroflexus sp.
Y-400-fl]
gi|163669683|gb|ABY36049.1| RNA binding S1 domain protein [Chloroflexus aurantiacus J-10-fl]
gi|222450198|gb|ACM54464.1| RNA binding S1 domain protein [Chloroflexus sp. Y-400-fl]
Length = 391
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 105/221 (47%), Gaps = 38/221 (17%)
Query: 122 TLAESRRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS 181
L+E ++ RK++ + E L PG G+V + FGAFID G DGL H+S LS
Sbjct: 189 VLSERAATQEWRKAQKHRLLTE-LQPGDVLVGRVNQLTNFGAFIDLGG-ADGLAHISELS 246
Query: 182 DNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTT 241
V ++ GQEVKV ++E + E RI L++R+ LQ
Sbjct: 247 WQRVNHPREVLQPGQEVKVVVVEIDRERERIGLSIRQ------LQ--------------- 285
Query: 242 RRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFA 301
+ P + D+ ++ GQ + G V N+T GAF+ + E EG + SE D A
Sbjct: 286 ----NNPWETIDQ----RYTLGQLVTGPVTNVTPFGAFVQVEEAVEGLIHASELDADPQA 337
Query: 302 NMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDDVGSN 340
LQ GQ V+ RV+ + R ++ L++++ +G N
Sbjct: 338 QPR--DILQPGQIVTARVISLDRQRQRMGLSLRR---IGEN 373
>gi|433049844|ref|ZP_20237177.1| protein yhgF [Escherichia coli KTE120]
gi|431562510|gb|ELI35812.1| protein yhgF [Escherichia coli KTE120]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|432487164|ref|ZP_19729072.1| protein yhgF [Escherichia coli KTE212]
gi|432672491|ref|ZP_19908014.1| protein yhgF [Escherichia coli KTE119]
gi|433175290|ref|ZP_20359801.1| protein yhgF [Escherichia coli KTE232]
gi|431013877|gb|ELD27599.1| protein yhgF [Escherichia coli KTE212]
gi|431208277|gb|ELF06499.1| protein yhgF [Escherichia coli KTE119]
gi|431689406|gb|ELJ54913.1| protein yhgF [Escherichia coli KTE232]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|432393987|ref|ZP_19636808.1| protein yhgF [Escherichia coli KTE21]
gi|432604227|ref|ZP_19840457.1| protein yhgF [Escherichia coli KTE66]
gi|430914865|gb|ELC35953.1| protein yhgF [Escherichia coli KTE21]
gi|431137607|gb|ELE39452.1| protein yhgF [Escherichia coli KTE66]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|90111588|ref|NP_417866.4| predicted transcriptional accessory protein [Escherichia coli str.
K-12 substr. MG1655]
gi|170082924|ref|YP_001732244.1| transcriptional accessory protein [Escherichia coli str. K-12
substr. DH10B]
gi|238902498|ref|YP_002928294.1| putative transcriptional accessory protein [Escherichia coli
BW2952]
gi|253771764|ref|YP_003034595.1| RNA binding S1 domain protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|386593885|ref|YP_006090285.1| RNA binding S1 domain-containing protein [Escherichia coli DH1]
gi|387623059|ref|YP_006130687.1| putative transcriptional accessory protein [Escherichia coli DH1]
gi|388479831|ref|YP_492025.1| transcriptional accessory protein [Escherichia coli str. K-12
substr. W3110]
gi|417945167|ref|ZP_12588403.1| putative transcriptional accessory protein [Escherichia coli
XH140A]
gi|417977025|ref|ZP_12617813.1| putative transcriptional accessory protein [Escherichia coli XH001]
gi|418956203|ref|ZP_13508131.1| RNA binding S1 domain protein [Escherichia coli J53]
gi|450251552|ref|ZP_21901877.1| transcriptional accessory protein [Escherichia coli S17]
gi|6176584|sp|P46837.3|YHGF_ECOLI RecName: Full=Protein YhgF
gi|85676634|dbj|BAE77884.1| predicted transcriptional accessory protein [Escherichia coli str.
K12 substr. W3110]
gi|87082262|gb|AAC76432.2| putative transcriptional accessory protein [Escherichia coli str.
K-12 substr. MG1655]
gi|169890759|gb|ACB04466.1| predicted transcriptional accessory protein [Escherichia coli str.
K-12 substr. DH10B]
gi|238863139|gb|ACR65137.1| predicted transcriptional accessory protein [Escherichia coli
BW2952]
gi|253322808|gb|ACT27410.1| RNA binding S1 domain protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|260447574|gb|ACX37996.1| RNA binding S1 domain protein [Escherichia coli DH1]
gi|315137983|dbj|BAJ45142.1| putative transcriptional accessory protein [Escherichia coli DH1]
gi|342363145|gb|EGU27256.1| putative transcriptional accessory protein [Escherichia coli
XH140A]
gi|344193292|gb|EGV47374.1| putative transcriptional accessory protein [Escherichia coli XH001]
gi|359333574|dbj|BAL40021.1| predicted transcriptional accessory protein [Escherichia coli str.
K-12 substr. MDS42]
gi|384380963|gb|EIE38826.1| RNA binding S1 domain protein [Escherichia coli J53]
gi|449315424|gb|EMD05567.1| transcriptional accessory protein [Escherichia coli S17]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|410465792|ref|ZP_11318997.1| transcriptional accessory protein [Desulfovibrio magneticus str.
Maddingley MBC34]
gi|409981169|gb|EKO37775.1| transcriptional accessory protein [Desulfovibrio magneticus str.
Maddingley MBC34]
Length = 716
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G+V ++ FGAF+D G DGLVHVS L+D +V D + + GQEV V ++
Sbjct: 632 DLRPGMRLPGRVTNVTAFGAFVDVGVHRDGLVHVSHLADAYVADPAKVAAAGQEVMVTVL 691
Query: 204 EANAETGRISLTMR 217
+ E GR+SL+M+
Sbjct: 692 AIDKERGRLSLSMK 705
>gi|425274606|ref|ZP_18666001.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli TW15901]
gi|408190809|gb|EKI16441.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli TW15901]
Length = 772
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 646 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 705
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 706 EVDLQRKRIALTMR 719
>gi|420300387|ref|ZP_14802430.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli TW09109]
gi|425176270|ref|ZP_18574381.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli FDA504]
gi|425208207|ref|ZP_18603995.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli FRIK2001]
gi|429010143|ref|ZP_19077591.1| protein yhgF [Escherichia coli 95.1288]
gi|429028602|ref|ZP_19094587.1| protein yhgF [Escherichia coli 96.0427]
gi|429069313|ref|ZP_19132761.1| protein yhgF [Escherichia coli 99.0672]
gi|390804758|gb|EIO71706.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli TW09109]
gi|408089050|gb|EKH22382.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli FDA504]
gi|408119313|gb|EKH50390.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli FRIK2001]
gi|427261431|gb|EKW27367.1| protein yhgF [Escherichia coli 95.1288]
gi|427277004|gb|EKW41563.1| protein yhgF [Escherichia coli 96.0427]
gi|427317000|gb|EKW78918.1| protein yhgF [Escherichia coli 99.0672]
Length = 772
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 646 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 705
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 706 EVDLQRKRIALTMR 719
>gi|422818567|ref|ZP_16866779.1| protein yhgF [Escherichia coli M919]
gi|385537973|gb|EIF84840.1| protein yhgF [Escherichia coli M919]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|419347144|ref|ZP_13888514.1| transcriptional accessory protein [Escherichia coli DEC13A]
gi|419351605|ref|ZP_13892935.1| transcriptional accessory protein [Escherichia coli DEC13B]
gi|419357077|ref|ZP_13898324.1| transcriptional accessory protein [Escherichia coli DEC13C]
gi|419362055|ref|ZP_13903263.1| transcriptional accessory protein [Escherichia coli DEC13D]
gi|419367214|ref|ZP_13908363.1| transcriptional accessory protein [Escherichia coli DEC13E]
gi|378183856|gb|EHX44497.1| transcriptional accessory protein [Escherichia coli DEC13A]
gi|378196565|gb|EHX57051.1| transcriptional accessory protein [Escherichia coli DEC13C]
gi|378197449|gb|EHX57930.1| transcriptional accessory protein [Escherichia coli DEC13B]
gi|378199588|gb|EHX60049.1| transcriptional accessory protein [Escherichia coli DEC13D]
gi|378209871|gb|EHX70238.1| transcriptional accessory protein [Escherichia coli DEC13E]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|386626194|ref|YP_006145922.1| putative transcriptional accessory protein [Escherichia coli O7:K1
str. CE10]
gi|349739930|gb|AEQ14636.1| putative transcriptional accessory protein [Escherichia coli O7:K1
str. CE10]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|424817929|ref|ZP_18243080.1| transcriptional accessory protein [Escherichia fergusonii ECD227]
gi|325498949|gb|EGC96808.1| transcriptional accessory protein [Escherichia fergusonii ECD227]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|416294072|ref|ZP_11650641.1| putative transcriptional accessory protein [Shigella flexneri CDC
796-83]
gi|417684244|ref|ZP_12333585.1| protein yhgF [Shigella boydii 3594-74]
gi|420328334|ref|ZP_14830066.1| protein yhgF [Shigella flexneri CCH060]
gi|420354899|ref|ZP_14855976.1| protein yhgF [Shigella boydii 4444-74]
gi|421685305|ref|ZP_16125081.1| transcriptional accessory protein [Shigella flexneri 1485-80]
gi|320186723|gb|EFW61446.1| putative transcriptional accessory protein [Shigella flexneri CDC
796-83]
gi|332090502|gb|EGI95600.1| protein yhgF [Shigella boydii 3594-74]
gi|391244612|gb|EIQ03894.1| protein yhgF [Shigella flexneri CCH060]
gi|391274108|gb|EIQ32922.1| protein yhgF [Shigella boydii 4444-74]
gi|404334793|gb|EJZ61269.1| transcriptional accessory protein [Shigella flexneri 1485-80]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|319788548|ref|YP_004148023.1| Tex-like protein [Pseudoxanthomonas suwonensis 11-1]
gi|317467060|gb|ADV28792.1| Tex-like protein [Pseudoxanthomonas suwonensis 11-1]
Length = 787
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 50/79 (63%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S LS+ +VKD +V G VKV++
Sbjct: 652 KDLRPGMVLEGVVSNVAAFGAFVDIGVHQDGLVHISALSERYVKDPRDVVKAGDIVKVKV 711
Query: 203 IEANAETGRISLTMRESDD 221
+E + RI+LT R SD+
Sbjct: 712 LEVDVARKRIALTCRMSDE 730
>gi|306816255|ref|ZP_07450393.1| putative transcriptional accessory protein [Escherichia coli NC101]
gi|331659696|ref|ZP_08360634.1| protein YhgF [Escherichia coli TA206]
gi|422372313|ref|ZP_16452678.1| S1 RNA binding domain protein [Escherichia coli MS 16-3]
gi|432383302|ref|ZP_19626227.1| protein yhgF [Escherichia coli KTE15]
gi|432613408|ref|ZP_19849565.1| protein yhgF [Escherichia coli KTE72]
gi|432648075|ref|ZP_19883860.1| protein yhgF [Escherichia coli KTE86]
gi|432657640|ref|ZP_19893336.1| protein yhgF [Escherichia coli KTE93]
gi|432900667|ref|ZP_20111046.1| protein yhgF [Escherichia coli KTE192]
gi|432907107|ref|ZP_20115583.1| protein yhgF [Escherichia coli KTE194]
gi|432940212|ref|ZP_20138126.1| protein yhgF [Escherichia coli KTE183]
gi|432973678|ref|ZP_20162521.1| protein yhgF [Escherichia coli KTE207]
gi|432987250|ref|ZP_20175962.1| protein yhgF [Escherichia coli KTE215]
gi|433030315|ref|ZP_20218164.1| protein yhgF [Escherichia coli KTE109]
gi|433040403|ref|ZP_20227993.1| protein yhgF [Escherichia coli KTE113]
gi|433084330|ref|ZP_20270776.1| protein yhgF [Escherichia coli KTE133]
gi|433102990|ref|ZP_20289061.1| protein yhgF [Escherichia coli KTE145]
gi|433190209|ref|ZP_20374296.1| protein yhgF [Escherichia coli KTE88]
gi|305850651|gb|EFM51108.1| putative transcriptional accessory protein [Escherichia coli NC101]
gi|315295933|gb|EFU55242.1| S1 RNA binding domain protein [Escherichia coli MS 16-3]
gi|331052911|gb|EGI24944.1| protein YhgF [Escherichia coli TA206]
gi|430903687|gb|ELC25423.1| protein yhgF [Escherichia coli KTE15]
gi|431146430|gb|ELE47866.1| protein yhgF [Escherichia coli KTE72]
gi|431178048|gb|ELE77961.1| protein yhgF [Escherichia coli KTE86]
gi|431187751|gb|ELE87250.1| protein yhgF [Escherichia coli KTE93]
gi|431423622|gb|ELH05748.1| protein yhgF [Escherichia coli KTE192]
gi|431428073|gb|ELH10015.1| protein yhgF [Escherichia coli KTE194]
gi|431460106|gb|ELH40395.1| protein yhgF [Escherichia coli KTE183]
gi|431479025|gb|ELH58768.1| protein yhgF [Escherichia coli KTE207]
gi|431494495|gb|ELH74083.1| protein yhgF [Escherichia coli KTE215]
gi|431540783|gb|ELI16237.1| protein yhgF [Escherichia coli KTE109]
gi|431548975|gb|ELI23066.1| protein yhgF [Escherichia coli KTE113]
gi|431598291|gb|ELI68087.1| protein yhgF [Escherichia coli KTE133]
gi|431616437|gb|ELI85498.1| protein yhgF [Escherichia coli KTE145]
gi|431702566|gb|ELJ67362.1| protein yhgF [Escherichia coli KTE88]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|254163335|ref|YP_003046443.1| putative transcriptional accessory protein [Escherichia coli B str.
REL606]
gi|254290085|ref|YP_003055833.1| transcriptional accessory protein [Escherichia coli BL21(DE3)]
gi|253975236|gb|ACT40907.1| predicted transcriptional accessory protein [Escherichia coli B
str. REL606]
gi|253979392|gb|ACT45062.1| predicted transcriptional accessory protein [Escherichia coli
BL21(DE3)]
Length = 772
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 646 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 705
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 706 EVDLQRKRIALTMR 719
>gi|168759432|ref|ZP_02784439.1| putative transcriptional accessory protein [Escherichia coli
O157:H7 str. EC4501]
gi|168785212|ref|ZP_02810219.1| putative transcriptional accessory protein [Escherichia coli
O157:H7 str. EC869]
gi|217325495|ref|ZP_03441579.1| putative transcriptional accessory protein [Escherichia coli
O157:H7 str. TW14588]
gi|261224688|ref|ZP_05938969.1| transcriptional accessory protein [Escherichia coli O157:H7 str.
FRIK2000]
gi|261254417|ref|ZP_05946950.1| transcriptional accessory protein [Escherichia coli O157:H7 str.
FRIK966]
gi|416315969|ref|ZP_11659782.1| putative transcriptional accessory protein [Escherichia coli
O157:H7 str. 1044]
gi|416320226|ref|ZP_11662778.1| putative transcriptional accessory protein [Escherichia coli
O157:H7 str. EC1212]
gi|419047503|ref|ZP_13594435.1| transcriptional accessory protein [Escherichia coli DEC3A]
gi|419053156|ref|ZP_13600023.1| transcriptional accessory protein [Escherichia coli DEC3B]
gi|419059107|ref|ZP_13605908.1| transcriptional accessory protein [Escherichia coli DEC3C]
gi|419064654|ref|ZP_13611374.1| transcriptional accessory protein [Escherichia coli DEC3D]
gi|419082586|ref|ZP_13628031.1| transcriptional accessory protein [Escherichia coli DEC4A]
gi|419094319|ref|ZP_13639598.1| transcriptional accessory protein [Escherichia coli DEC4C]
gi|419100291|ref|ZP_13645480.1| transcriptional accessory protein [Escherichia coli DEC4D]
gi|419106003|ref|ZP_13651126.1| transcriptional accessory protein [Escherichia coli DEC4E]
gi|419111383|ref|ZP_13656434.1| transcriptional accessory protein [Escherichia coli DEC4F]
gi|420271919|ref|ZP_14774270.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA22]
gi|420277423|ref|ZP_14779703.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA40]
gi|420289069|ref|ZP_14791251.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli TW10246]
gi|420294534|ref|ZP_14796645.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli TW11039]
gi|420306579|ref|ZP_14808567.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli TW10119]
gi|420311946|ref|ZP_14813874.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC1738]
gi|421814333|ref|ZP_16250037.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli 8.0416]
gi|421820167|ref|ZP_16255653.1| protein yhgF [Escherichia coli 10.0821]
gi|421826226|ref|ZP_16261579.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli FRIK920]
gi|421832975|ref|ZP_16268255.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA7]
gi|423727351|ref|ZP_17701256.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA31]
gi|424079549|ref|ZP_17816513.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli FDA505]
gi|424086007|ref|ZP_17822490.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli FDA517]
gi|424092407|ref|ZP_17828333.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli FRIK1996]
gi|424099079|ref|ZP_17834351.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli FRIK1985]
gi|424105290|ref|ZP_17840029.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli FRIK1990]
gi|424111936|ref|ZP_17846162.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli 93-001]
gi|424124063|ref|ZP_17857366.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA5]
gi|424136535|ref|ZP_17868979.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA10]
gi|424143088|ref|ZP_17874951.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA14]
gi|424149490|ref|ZP_17880857.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA15]
gi|424451776|ref|ZP_17903441.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA32]
gi|424457964|ref|ZP_17909070.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA33]
gi|424470727|ref|ZP_17920534.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA41]
gi|424477230|ref|ZP_17926540.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA42]
gi|424495845|ref|ZP_17943448.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli TW09195]
gi|424522330|ref|ZP_17966438.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli TW14301]
gi|424528208|ref|ZP_17971916.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC4421]
gi|424534355|ref|ZP_17977695.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC4422]
gi|425100064|ref|ZP_18502788.1| protein yhgF [Escherichia coli 3.4870]
gi|425106162|ref|ZP_18508471.1| protein yhgF [Escherichia coli 5.2239]
gi|425128097|ref|ZP_18529257.1| protein yhgF [Escherichia coli 8.0586]
gi|425164466|ref|ZP_18563345.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli FDA506]
gi|425170211|ref|ZP_18568676.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli FDA507]
gi|425182315|ref|ZP_18580001.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli FRIK1999]
gi|425188579|ref|ZP_18585843.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli FRIK1997]
gi|425195347|ref|ZP_18592109.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli NE1487]
gi|425201823|ref|ZP_18598022.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli NE037]
gi|425213962|ref|ZP_18609354.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA4]
gi|425220084|ref|ZP_18615038.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA23]
gi|425226632|ref|ZP_18621090.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA49]
gi|425232887|ref|ZP_18626919.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA45]
gi|425238812|ref|ZP_18632523.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli TT12B]
gi|425245050|ref|ZP_18638348.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli MA6]
gi|425257023|ref|ZP_18649527.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli CB7326]
gi|425296728|ref|ZP_18686888.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA38]
gi|425413109|ref|ZP_18794864.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli NE098]
gi|425419421|ref|ZP_18800683.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli FRIK523]
gi|425430698|ref|ZP_18811299.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli 0.1304]
gi|428949130|ref|ZP_19021397.1| protein yhgF [Escherichia coli 88.1467]
gi|428955202|ref|ZP_19026989.1| protein yhgF [Escherichia coli 88.1042]
gi|428961156|ref|ZP_19032444.1| protein yhgF [Escherichia coli 89.0511]
gi|428967810|ref|ZP_19038514.1| protein yhgF [Escherichia coli 90.0091]
gi|428973565|ref|ZP_19043882.1| protein yhgF [Escherichia coli 90.0039]
gi|428980045|ref|ZP_19049853.1| protein yhgF [Escherichia coli 90.2281]
gi|428985823|ref|ZP_19055207.1| protein yhgF [Escherichia coli 93.0055]
gi|428991921|ref|ZP_19060901.1| protein yhgF [Escherichia coli 93.0056]
gi|428997810|ref|ZP_19066396.1| protein yhgF [Escherichia coli 94.0618]
gi|429004088|ref|ZP_19072177.1| protein yhgF [Escherichia coli 95.0183]
gi|429016698|ref|ZP_19083572.1| protein yhgF [Escherichia coli 95.0943]
gi|429022531|ref|ZP_19089044.1| protein yhgF [Escherichia coli 96.0428]
gi|429034770|ref|ZP_19100285.1| protein yhgF [Escherichia coli 96.0939]
gi|429040857|ref|ZP_19105950.1| protein yhgF [Escherichia coli 96.0932]
gi|429046775|ref|ZP_19111480.1| protein yhgF [Escherichia coli 96.0107]
gi|429052078|ref|ZP_19116639.1| protein yhgF [Escherichia coli 97.0003]
gi|429063082|ref|ZP_19127063.1| protein yhgF [Escherichia coli 97.0007]
gi|429080418|ref|ZP_19143547.1| protein yhgF [Escherichia coli 99.0713]
gi|429828502|ref|ZP_19359515.1| protein yhgF [Escherichia coli 96.0109]
gi|429834937|ref|ZP_19365232.1| protein yhgF [Escherichia coli 97.0010]
gi|444927016|ref|ZP_21246285.1| protein yhgF [Escherichia coli 09BKT078844]
gi|444960254|ref|ZP_21278087.1| protein yhgF [Escherichia coli 99.1753]
gi|444965414|ref|ZP_21282988.1| protein yhgF [Escherichia coli 99.1775]
gi|444971440|ref|ZP_21288785.1| protein yhgF [Escherichia coli 99.1793]
gi|444976734|ref|ZP_21293830.1| protein yhgF [Escherichia coli 99.1805]
gi|444982114|ref|ZP_21299016.1| protein yhgF [Escherichia coli ATCC 700728]
gi|444987614|ref|ZP_21304385.1| protein yhgF [Escherichia coli PA11]
gi|445025486|ref|ZP_21341303.1| protein yhgF [Escherichia coli 7.1982]
gi|445030944|ref|ZP_21346607.1| protein yhgF [Escherichia coli 99.1781]
gi|445047234|ref|ZP_21362477.1| protein yhgF [Escherichia coli 3.4880]
gi|445052768|ref|ZP_21367787.1| protein yhgF [Escherichia coli 95.0083]
gi|445060771|ref|ZP_21373290.1| protein yhgF [Escherichia coli 99.0670]
gi|189369948|gb|EDU88364.1| putative transcriptional accessory protein [Escherichia coli
O157:H7 str. EC4501]
gi|189374245|gb|EDU92661.1| putative transcriptional accessory protein [Escherichia coli
O157:H7 str. EC869]
gi|217321716|gb|EEC30140.1| putative transcriptional accessory protein [Escherichia coli
O157:H7 str. TW14588]
gi|320191582|gb|EFW66232.1| putative transcriptional accessory protein [Escherichia coli
O157:H7 str. EC1212]
gi|326337630|gb|EGD61465.1| putative transcriptional accessory protein [Escherichia coli
O157:H7 str. 1044]
gi|377890211|gb|EHU54669.1| transcriptional accessory protein [Escherichia coli DEC3A]
gi|377892003|gb|EHU56455.1| transcriptional accessory protein [Escherichia coli DEC3B]
gi|377903036|gb|EHU67334.1| transcriptional accessory protein [Escherichia coli DEC3C]
gi|377907152|gb|EHU71388.1| transcriptional accessory protein [Escherichia coli DEC3D]
gi|377924024|gb|EHU87980.1| transcriptional accessory protein [Escherichia coli DEC4A]
gi|377938518|gb|EHV02285.1| transcriptional accessory protein [Escherichia coli DEC4D]
gi|377939390|gb|EHV03145.1| transcriptional accessory protein [Escherichia coli DEC4C]
gi|377945039|gb|EHV08737.1| transcriptional accessory protein [Escherichia coli DEC4E]
gi|377954406|gb|EHV17965.1| transcriptional accessory protein [Escherichia coli DEC4F]
gi|390638696|gb|EIN18199.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli FRIK1996]
gi|390640081|gb|EIN19546.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli FDA517]
gi|390640412|gb|EIN19871.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli FDA505]
gi|390657815|gb|EIN35626.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli FRIK1985]
gi|390657960|gb|EIN35767.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli 93-001]
gi|390661138|gb|EIN38809.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli FRIK1990]
gi|390678494|gb|EIN54456.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA5]
gi|390693493|gb|EIN68126.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA10]
gi|390697927|gb|EIN72324.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA14]
gi|390698444|gb|EIN72823.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA15]
gi|390712377|gb|EIN85334.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA22]
gi|390738703|gb|EIO09907.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA31]
gi|390739459|gb|EIO10636.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA32]
gi|390742678|gb|EIO13674.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA33]
gi|390756298|gb|EIO25809.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA40]
gi|390764493|gb|EIO33701.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA41]
gi|390766264|gb|EIO35397.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA42]
gi|390788021|gb|EIO55494.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli TW10246]
gi|390793862|gb|EIO61189.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli TW11039]
gi|390814294|gb|EIO80874.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli TW10119]
gi|390825239|gb|EIO91177.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli TW09195]
gi|390843871|gb|EIP07646.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli TW14301]
gi|390848471|gb|EIP11941.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC4421]
gi|390858876|gb|EIP21244.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC4422]
gi|390898499|gb|EIP57772.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC1738]
gi|408062231|gb|EKG96737.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA7]
gi|408064610|gb|EKG99091.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli FRIK920]
gi|408076851|gb|EKH11065.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli FDA506]
gi|408080797|gb|EKH14846.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli FDA507]
gi|408095159|gb|EKH28145.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli FRIK1999]
gi|408101563|gb|EKH33996.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli FRIK1997]
gi|408106346|gb|EKH38454.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli NE1487]
gi|408113091|gb|EKH44698.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli NE037]
gi|408125504|gb|EKH56109.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA4]
gi|408135296|gb|EKH65088.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA23]
gi|408138209|gb|EKH67895.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA49]
gi|408144567|gb|EKH73797.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA45]
gi|408152868|gb|EKH81288.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli TT12B]
gi|408157903|gb|EKH86041.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli MA6]
gi|408171327|gb|EKH98454.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli CB7326]
gi|408214568|gb|EKI38992.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli PA38]
gi|408324327|gb|EKJ40260.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli NE098]
gi|408334820|gb|EKJ49696.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli FRIK523]
gi|408343822|gb|EKJ58215.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli 0.1304]
gi|408546111|gb|EKK23527.1| protein yhgF [Escherichia coli 5.2239]
gi|408546514|gb|EKK23928.1| protein yhgF [Escherichia coli 3.4870]
gi|408564922|gb|EKK41019.1| protein yhgF [Escherichia coli 8.0586]
gi|408599528|gb|EKK73428.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli 8.0416]
gi|408610212|gb|EKK83586.1| protein yhgF [Escherichia coli 10.0821]
gi|427202108|gb|EKV72451.1| protein yhgF [Escherichia coli 88.1042]
gi|427203044|gb|EKV73350.1| protein yhgF [Escherichia coli 89.0511]
gi|427205890|gb|EKV76119.1| protein yhgF [Escherichia coli 88.1467]
gi|427218574|gb|EKV87571.1| protein yhgF [Escherichia coli 90.0091]
gi|427221892|gb|EKV90695.1| protein yhgF [Escherichia coli 90.2281]
gi|427225422|gb|EKV94067.1| protein yhgF [Escherichia coli 90.0039]
gi|427239188|gb|EKW06680.1| protein yhgF [Escherichia coli 93.0056]
gi|427239536|gb|EKW07019.1| protein yhgF [Escherichia coli 93.0055]
gi|427243637|gb|EKW11001.1| protein yhgF [Escherichia coli 94.0618]
gi|427257846|gb|EKW23962.1| protein yhgF [Escherichia coli 95.0183]
gi|427258961|gb|EKW25035.1| protein yhgF [Escherichia coli 95.0943]
gi|427274256|gb|EKW38915.1| protein yhgF [Escherichia coli 96.0428]
gi|427281272|gb|EKW45597.1| protein yhgF [Escherichia coli 96.0939]
gi|427289781|gb|EKW53297.1| protein yhgF [Escherichia coli 96.0932]
gi|427296519|gb|EKW59573.1| protein yhgF [Escherichia coli 96.0107]
gi|427298513|gb|EKW61514.1| protein yhgF [Escherichia coli 97.0003]
gi|427312245|gb|EKW74404.1| protein yhgF [Escherichia coli 97.0007]
gi|427327154|gb|EKW88554.1| protein yhgF [Escherichia coli 99.0713]
gi|429251768|gb|EKY36346.1| protein yhgF [Escherichia coli 96.0109]
gi|429253032|gb|EKY37532.1| protein yhgF [Escherichia coli 97.0010]
gi|444537329|gb|ELV17269.1| protein yhgF [Escherichia coli 09BKT078844]
gi|444570147|gb|ELV46691.1| protein yhgF [Escherichia coli 99.1753]
gi|444573812|gb|ELV50155.1| protein yhgF [Escherichia coli 99.1775]
gi|444576939|gb|ELV53085.1| protein yhgF [Escherichia coli 99.1793]
gi|444590158|gb|ELV65472.1| protein yhgF [Escherichia coli PA11]
gi|444590432|gb|ELV65743.1| protein yhgF [Escherichia coli ATCC 700728]
gi|444591407|gb|ELV66697.1| protein yhgF [Escherichia coli 99.1805]
gi|444635882|gb|ELW09291.1| protein yhgF [Escherichia coli 7.1982]
gi|444638434|gb|ELW11772.1| protein yhgF [Escherichia coli 99.1781]
gi|444657618|gb|ELW30087.1| protein yhgF [Escherichia coli 3.4880]
gi|444660684|gb|ELW33034.1| protein yhgF [Escherichia coli 95.0083]
gi|444667894|gb|ELW39922.1| protein yhgF [Escherichia coli 99.0670]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|170018357|ref|YP_001723311.1| RNA-binding S1 domain-containing protein [Escherichia coli ATCC
8739]
gi|169753285|gb|ACA75984.1| RNA binding S1 domain protein [Escherichia coli ATCC 8739]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|194431285|ref|ZP_03063578.1| putative transcriptional accessory protein [Shigella dysenteriae
1012]
gi|417674497|ref|ZP_12323930.1| protein yhgF [Shigella dysenteriae 155-74]
gi|194420740|gb|EDX36816.1| putative transcriptional accessory protein [Shigella dysenteriae
1012]
gi|332085781|gb|EGI90945.1| protein yhgF [Shigella dysenteriae 155-74]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|193068760|ref|ZP_03049720.1| putative transcriptional accessory protein [Escherichia coli
E110019]
gi|432676510|ref|ZP_19911958.1| protein yhgF [Escherichia coli KTE142]
gi|192957836|gb|EDV88279.1| putative transcriptional accessory protein [Escherichia coli
E110019]
gi|431211738|gb|ELF09699.1| protein yhgF [Escherichia coli KTE142]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|452976689|gb|EME76504.1| 30S ribosomal protein S1 [Bacillus sonorensis L12]
Length = 381
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 95/188 (50%), Gaps = 34/188 (18%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G GKV+ + FGAF+D G DGLVH+S+LS + V+ +V GQ+VKV+++ +
Sbjct: 188 GQVLEGKVQRLTDFGAFVDIGGI-DGLVHISQLSHSHVEKPSDVVEEGQDVKVKVLSVDR 246
Query: 208 ETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLE 267
+ RISL+++E+ G+KV KPG L+
Sbjct: 247 DNERISLSIKET-------LPGPWANIGEKV--------KPGDV--------------LD 277
Query: 268 GTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISRGQ- 326
GTV+ L GAF+ + G EG + S+ S+ L+ GQ+V V+VL ++ +
Sbjct: 278 GTVQRLVSFGAFVEVLPGVEGLVHISQISNKHIGT--PHEVLEEGQDVKVKVLDVNEAEE 335
Query: 327 -VTLTMKK 333
++L+MK+
Sbjct: 336 RISLSMKE 343
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 70/128 (54%), Gaps = 4/128 (3%)
Query: 104 PSDVETSESSSIKSEASPTLAESRRSRTARKSEMP-PVKN--EDLIPGATFTGKVRSIQP 160
PSDV E +K + ++ R + K +P P N E + PG G V+ +
Sbjct: 227 PSDV-VEEGQDVKVKVLSVDRDNERISLSIKETLPGPWANIGEKVKPGDVLDGTVQRLVS 285
Query: 161 FGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESD 220
FGAF++ +GLVH+S++S+ + ++ GQ+VKV++++ N RISL+M+E +
Sbjct: 286 FGAFVEVLPGVEGLVHISQISNKHIGTPHEVLEEGQDVKVKVLDVNEAEERISLSMKELE 345
Query: 221 DISKLQQQ 228
+ K +Q+
Sbjct: 346 ENDKTEQE 353
>gi|425290556|ref|ZP_18681375.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli 3006]
gi|408210090|gb|EKI34663.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli 3006]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|325917461|ref|ZP_08179670.1| transcriptional accessory protein [Xanthomonas vesicatoria ATCC
35937]
gi|325536335|gb|EGD08122.1| transcriptional accessory protein [Xanthomonas vesicatoria ATCC
35937]
Length = 787
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 47/76 (61%)
Query: 145 LIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIE 204
L PG G V ++ FGAF+D G DGLVH+S LSD FVKD +V G VKV+++E
Sbjct: 652 LKPGMVLEGVVSNVAAFGAFVDIGVHQDGLVHISALSDTFVKDPRDVVKAGDIVKVKVLE 711
Query: 205 ANAETGRISLTMRESD 220
+ RI+LT R SD
Sbjct: 712 VDVARKRIALTCRLSD 727
>gi|331649205|ref|ZP_08350291.1| protein YhgF [Escherichia coli M605]
gi|386621048|ref|YP_006140628.1| hypothetical protein ECNA114_3515 [Escherichia coli NA114]
gi|417663967|ref|ZP_12313547.1| transcription accessory protein (S1 RNA-binding domain)
[Escherichia coli AA86]
gi|432423809|ref|ZP_19666347.1| protein yhgF [Escherichia coli KTE178]
gi|432560671|ref|ZP_19797326.1| protein yhgF [Escherichia coli KTE49]
gi|432707745|ref|ZP_19942821.1| protein yhgF [Escherichia coli KTE6]
gi|330909440|gb|EGH37954.1| transcription accessory protein (S1 RNA-binding domain)
[Escherichia coli AA86]
gi|331041703|gb|EGI13847.1| protein YhgF [Escherichia coli M605]
gi|333971549|gb|AEG38354.1| Hypothetical protein ECNA114_3515 [Escherichia coli NA114]
gi|430942153|gb|ELC62291.1| protein yhgF [Escherichia coli KTE178]
gi|431088732|gb|ELD94602.1| protein yhgF [Escherichia coli KTE49]
gi|431255279|gb|ELF48533.1| protein yhgF [Escherichia coli KTE6]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|300822796|ref|ZP_07102932.1| S1 RNA binding domain protein [Escherichia coli MS 119-7]
gi|331670229|ref|ZP_08371068.1| protein YhgF [Escherichia coli TA271]
gi|331679471|ref|ZP_08380141.1| protein YhgF [Escherichia coli H591]
gi|417267520|ref|ZP_12054881.1| Tex-like protein N-terminal domain protein [Escherichia coli
3.3884]
gi|423707683|ref|ZP_17682063.1| protein yhgF [Escherichia coli B799]
gi|432378570|ref|ZP_19621553.1| protein yhgF [Escherichia coli KTE12]
gi|432829020|ref|ZP_20062637.1| protein yhgF [Escherichia coli KTE135]
gi|432836344|ref|ZP_20069876.1| protein yhgF [Escherichia coli KTE136]
gi|300524562|gb|EFK45631.1| S1 RNA binding domain protein [Escherichia coli MS 119-7]
gi|331062291|gb|EGI34211.1| protein YhgF [Escherichia coli TA271]
gi|331072643|gb|EGI43968.1| protein YhgF [Escherichia coli H591]
gi|385709315|gb|EIG46313.1| protein yhgF [Escherichia coli B799]
gi|386229878|gb|EII57233.1| Tex-like protein N-terminal domain protein [Escherichia coli
3.3884]
gi|430896204|gb|ELC18448.1| protein yhgF [Escherichia coli KTE12]
gi|431382445|gb|ELG66783.1| protein yhgF [Escherichia coli KTE136]
gi|431383092|gb|ELG67233.1| protein yhgF [Escherichia coli KTE135]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|301019573|ref|ZP_07183735.1| S1 RNA binding domain protein [Escherichia coli MS 69-1]
gi|417141298|ref|ZP_11984211.1| Tex-like protein N-terminal domain protein [Escherichia coli
97.0259]
gi|417309906|ref|ZP_12096733.1| Protein tex [Escherichia coli PCN033]
gi|419918664|ref|ZP_14436843.1| putative transcriptional accessory protein [Escherichia coli KD2]
gi|432720524|ref|ZP_19955488.1| protein yhgF [Escherichia coli KTE9]
gi|432794600|ref|ZP_20028681.1| protein yhgF [Escherichia coli KTE78]
gi|432796116|ref|ZP_20030156.1| protein yhgF [Escherichia coli KTE79]
gi|300399198|gb|EFJ82736.1| S1 RNA binding domain protein [Escherichia coli MS 69-1]
gi|338768511|gb|EGP23304.1| Protein tex [Escherichia coli PCN033]
gi|386155788|gb|EIH12138.1| Tex-like protein N-terminal domain protein [Escherichia coli
97.0259]
gi|388389678|gb|EIL51200.1| putative transcriptional accessory protein [Escherichia coli KD2]
gi|431260559|gb|ELF52656.1| protein yhgF [Escherichia coli KTE9]
gi|431337084|gb|ELG24178.1| protein yhgF [Escherichia coli KTE78]
gi|431349337|gb|ELG36178.1| protein yhgF [Escherichia coli KTE79]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|162455162|ref|YP_001617529.1| 30S ribosomal protein S1 [Sorangium cellulosum So ce56]
gi|161165744|emb|CAN97049.1| 30S ribosomal protein S1 [Sorangium cellulosum So ce56]
Length = 562
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 95/200 (47%), Gaps = 36/200 (18%)
Query: 126 SRRSRTAR-KSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNF 184
SRR R + EM E L G T G +++I +GAF+D G DGL+H++ +S
Sbjct: 170 SRRVLLERERDEMKAKTLETLTEGMTVKGTIKNITEYGAFVDLGGI-DGLLHITDMSWGR 228
Query: 185 VKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRS 244
V + VG EV V++++ NA+T R+SL ++++ + ++A +G KVR
Sbjct: 229 VNHPSEVFQVGDEVLVKVLKYNADTERVSLGLKQTQE-DPWNHAEEAYPAGKKVR----- 282
Query: 245 TSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMM 304
G V ++T GAF+ L G EG + SE S + +
Sbjct: 283 -----------------------GKVMSITDYGAFVELEPGVEGLIHVSEMS---WTKKV 316
Query: 305 GGSS--LQVGQEVSVRVLRI 322
S L+VGQE+ +VL +
Sbjct: 317 KHPSKLLEVGQELECQVLEV 336
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 30/150 (20%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS-DNFVKDVGSIVSVGQEVKVRLIEAN 206
G GKV SI +GAF++ +GL+HVS +S VK ++ VGQE++ +++E +
Sbjct: 278 GKKVRGKVMSITDYGAFVELEPGVEGLIHVSEMSWTKKVKHPSKLLEVGQELECQVLEVD 337
Query: 207 AETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDL 266
A RISL ++ Q + D + T K+ G +
Sbjct: 338 ARAKRISLGLK--------QLEPDPWM---------------------LFTDKYHPGDKI 368
Query: 267 EGTVKNLTRSGAFISLPEGEEGFLPTSEES 296
G V++LT G F+ + EG +G + S+ S
Sbjct: 369 AGKVRSLTDYGVFVGIEEGVDGMVHKSDLS 398
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 79/191 (41%), Gaps = 41/191 (21%)
Query: 147 PGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNF-VKDVGSIVSVGQEVKVRLIEA 205
PG GKVRS+ +G F+ DG+VH S LS + V + + G +V+ ++
Sbjct: 364 PGDKIAGKVRSLTDYGVFVGIEEGVDGMVHKSDLSWSVRVNNPSDLYHKGDDVEAIILSI 423
Query: 206 NAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQD 265
N + ++SL +++ D D S + PG+ D+ + V
Sbjct: 424 NHDEKKVSLGIKQLWD--------DPWPS-------MLTEYPPGRVLDDAQVVSIVD--- 465
Query: 266 LEGTVKNLTRSGAFISLPEGEEGFLPTS--EESDDGFANMMGGSSLQVGQEVSVRV--LR 321
G F+ L EG EG + S +E ++G L+VG +V + L
Sbjct: 466 ----------YGVFVRLREGVEGLISQSDVQEPEEG--------KLKVGDKVKAEISSLD 507
Query: 322 ISRGQVTLTMK 332
++ LTMK
Sbjct: 508 TVDRRLFLTMK 518
>gi|117621065|ref|YP_854833.1| S1 RNA-binding domain-containing protein [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
gi|117562472|gb|ABK39420.1| S1 RNA binding domain protein [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 834
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 48/77 (62%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL+P G V ++ FGAF+D G DGLVH+S L+D FVKD +V G V+V
Sbjct: 708 KISDLVPEMVLEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDRFVKDPREVVKAGDIVRV 767
Query: 201 RLIEANAETGRISLTMR 217
+++E + RISLTMR
Sbjct: 768 KVLEVDVPRKRISLTMR 784
>gi|148658373|ref|YP_001278578.1| RNA-binding S1 domain-containing protein [Roseiflexus sp. RS-1]
gi|148570483|gb|ABQ92628.1| RNA binding S1 domain protein [Roseiflexus sp. RS-1]
Length = 393
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 99/214 (46%), Gaps = 35/214 (16%)
Query: 122 TLAESRRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS 181
L+E ++ RK++ + E L PG TG+V + FGAFID G DGL H+S LS
Sbjct: 188 VLSERSATQEWRKAQKQRLLTE-LQPGDILTGRVNQLTNFGAFIDLGG-ADGLAHISELS 245
Query: 182 DNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTT 241
V ++S GQEV+V ++E +AE RI L++R
Sbjct: 246 WQRVNHPREVLSPGQEVRVMVVEIDAERERIGLSLR------------------------ 281
Query: 242 RRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFA 301
R P D+ ++ GQ + G V N+ GAF+ + E EG + SE D A
Sbjct: 282 -RLQPNPWDTIDQ----RYSLGQLVSGPVTNVAPFGAFVQIEEAVEGLIHASELDADPQA 336
Query: 302 NMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKK 333
LQ GQ ++ R++ + R ++ L+++
Sbjct: 337 QPR--DLLQPGQIITARIISLDKQRQRMGLSLRH 368
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G +G V ++ PFGAF+ +GL+H S L + ++ GQ + R+I +
Sbjct: 298 GQLVSGPVTNVAPFGAFVQIEEAVEGLIHASELDADPQAQPRDLLQPGQIITARIISLDK 357
Query: 208 ETGRISLTMRES 219
+ R+ L++R +
Sbjct: 358 QRQRMGLSLRHN 369
>gi|432949583|ref|ZP_20144364.1| protein yhgF [Escherichia coli KTE196]
gi|433044922|ref|ZP_20232407.1| protein yhgF [Escherichia coli KTE117]
gi|431454130|gb|ELH34508.1| protein yhgF [Escherichia coli KTE196]
gi|431553664|gb|ELI27589.1| protein yhgF [Escherichia coli KTE117]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|419331052|ref|ZP_13872647.1| protein yhgF [Escherichia coli DEC12C]
gi|378166678|gb|EHX27599.1| protein yhgF [Escherichia coli DEC12C]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|331685047|ref|ZP_08385633.1| protein YhgF [Escherichia coli H299]
gi|450193843|ref|ZP_21892154.1| transcriptional accessory protein [Escherichia coli SEPT362]
gi|331077418|gb|EGI48630.1| protein YhgF [Escherichia coli H299]
gi|449317079|gb|EMD07173.1| transcriptional accessory protein [Escherichia coli SEPT362]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|291284743|ref|YP_003501561.1| protein yhgF [Escherichia coli O55:H7 str. CB9615]
gi|387508775|ref|YP_006161031.1| putative transcriptional accessory protein [Escherichia coli O55:H7
str. RM12579]
gi|416778032|ref|ZP_11875604.1| putative transcriptional accessory protein [Escherichia coli
O157:H7 str. G5101]
gi|416789316|ref|ZP_11880447.1| putative transcriptional accessory protein [Escherichia coli
O157:H- str. 493-89]
gi|416801179|ref|ZP_11885352.1| putative transcriptional accessory protein [Escherichia coli
O157:H- str. H 2687]
gi|416812133|ref|ZP_11890302.1| putative transcriptional accessory protein [Escherichia coli O55:H7
str. 3256-97]
gi|416822384|ref|ZP_11894820.1| putative transcriptional accessory protein [Escherichia coli O55:H7
str. USDA 5905]
gi|416832755|ref|ZP_11899918.1| putative transcriptional accessory protein [Escherichia coli
O157:H7 str. LSU-61]
gi|417630790|ref|ZP_12281024.1| protein yhgF [Escherichia coli STEC_MHI813]
gi|419077463|ref|ZP_13622965.1| transcriptional accessory protein [Escherichia coli DEC3F]
gi|419116927|ref|ZP_13661937.1| transcriptional accessory protein [Escherichia coli DEC5A]
gi|419122641|ref|ZP_13667583.1| transcriptional accessory protein [Escherichia coli DEC5B]
gi|419128029|ref|ZP_13672903.1| transcriptional accessory protein [Escherichia coli DEC5C]
gi|419133493|ref|ZP_13678320.1| transcriptional accessory protein [Escherichia coli DEC5D]
gi|419138650|ref|ZP_13683440.1| protein yhgF [Escherichia coli DEC5E]
gi|420282667|ref|ZP_14784899.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli TW06591]
gi|422833855|ref|ZP_16881920.1| yhgF [Escherichia coli E101]
gi|425146121|ref|ZP_18546106.1| protein yhgF [Escherichia coli 10.0869]
gi|425251236|ref|ZP_18644172.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli 5905]
gi|425263276|ref|ZP_18655269.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC96038]
gi|425269276|ref|ZP_18660899.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli 5412]
gi|432451620|ref|ZP_19693877.1| protein yhgF [Escherichia coli KTE193]
gi|433035270|ref|ZP_20222967.1| protein yhgF [Escherichia coli KTE112]
gi|445014202|ref|ZP_21330301.1| protein yhgF [Escherichia coli PA48]
gi|290764616|gb|ADD58577.1| protein yhgF [Escherichia coli O55:H7 str. CB9615]
gi|320639689|gb|EFX09283.1| putative transcriptional accessory protein [Escherichia coli
O157:H7 str. G5101]
gi|320645187|gb|EFX14203.1| putative transcriptional accessory protein [Escherichia coli
O157:H- str. 493-89]
gi|320650498|gb|EFX18964.1| putative transcriptional accessory protein [Escherichia coli
O157:H- str. H 2687]
gi|320655690|gb|EFX23613.1| putative transcriptional accessory protein [Escherichia coli O55:H7
str. 3256-97 TW 07815]
gi|320661474|gb|EFX28889.1| putative transcriptional accessory protein [Escherichia coli O55:H7
str. USDA 5905]
gi|320666497|gb|EFX33480.1| putative transcriptional accessory protein [Escherichia coli
O157:H7 str. LSU-61]
gi|345370069|gb|EGX02047.1| protein yhgF [Escherichia coli STEC_MHI813]
gi|371604478|gb|EHN93106.1| yhgF [Escherichia coli E101]
gi|374360769|gb|AEZ42476.1| putative transcriptional accessory protein [Escherichia coli O55:H7
str. RM12579]
gi|377918336|gb|EHU82384.1| transcriptional accessory protein [Escherichia coli DEC3F]
gi|377957986|gb|EHV21510.1| transcriptional accessory protein [Escherichia coli DEC5A]
gi|377962709|gb|EHV26161.1| transcriptional accessory protein [Escherichia coli DEC5B]
gi|377970767|gb|EHV34125.1| transcriptional accessory protein [Escherichia coli DEC5C]
gi|377972216|gb|EHV35566.1| transcriptional accessory protein [Escherichia coli DEC5D]
gi|377980774|gb|EHV44034.1| protein yhgF [Escherichia coli DEC5E]
gi|390779458|gb|EIO47172.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli TW06591]
gi|408161870|gb|EKH89795.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli 5905]
gi|408178020|gb|EKI04763.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli EC96038]
gi|408181108|gb|EKI07684.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli 5412]
gi|408589136|gb|EKK63668.1| protein yhgF [Escherichia coli 10.0869]
gi|430978049|gb|ELC94872.1| protein yhgF [Escherichia coli KTE193]
gi|431547324|gb|ELI21704.1| protein yhgF [Escherichia coli KTE112]
gi|444621107|gb|ELV95085.1| protein yhgF [Escherichia coli PA48]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|194435878|ref|ZP_03067981.1| putative transcriptional accessory protein [Escherichia coli 101-1]
gi|251786657|ref|YP_003000961.1| transcriptional accessory protein [Escherichia coli BL21(DE3)]
gi|300931061|ref|ZP_07146416.1| S1 RNA binding domain protein [Escherichia coli MS 187-1]
gi|422788701|ref|ZP_16841436.1| tex protein containing protein [Escherichia coli H489]
gi|442596727|ref|ZP_21014531.1| Transcription accessory protein (S1 RNA-binding domain)
[Escherichia coli O5:K4(L):H4 str. ATCC 23502]
gi|194425421|gb|EDX41405.1| putative transcriptional accessory protein [Escherichia coli 101-1]
gi|242378930|emb|CAQ33728.1| predicted transcriptional accessory protein [Escherichia coli
BL21(DE3)]
gi|300461105|gb|EFK24598.1| S1 RNA binding domain protein [Escherichia coli MS 187-1]
gi|323959593|gb|EGB55245.1| tex protein containing protein [Escherichia coli H489]
gi|441654835|emb|CCQ00444.1| Transcription accessory protein (S1 RNA-binding domain)
[Escherichia coli O5:K4(L):H4 str. ATCC 23502]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|157162884|ref|YP_001460202.1| protein yhgF [Escherichia coli HS]
gi|187730372|ref|YP_001882084.1| putative transcriptional accessory protein [Shigella boydii CDC
3083-94]
gi|191167913|ref|ZP_03029717.1| putative transcriptional accessory protein [Escherichia coli B7A]
gi|209920863|ref|YP_002294947.1| hypothetical protein ECSE_3672 [Escherichia coli SE11]
gi|218555956|ref|YP_002388869.1| transcriptional accessory protein [Escherichia coli IAI1]
gi|293453713|ref|ZP_06664132.1| transcriptional accessory protein [Escherichia coli B088]
gi|300815397|ref|ZP_07095622.1| S1 RNA binding domain protein [Escherichia coli MS 107-1]
gi|300907450|ref|ZP_07125096.1| S1 RNA binding domain protein [Escherichia coli MS 84-1]
gi|300919306|ref|ZP_07135820.1| S1 RNA binding domain protein [Escherichia coli MS 115-1]
gi|300926903|ref|ZP_07142669.1| S1 RNA binding domain protein [Escherichia coli MS 182-1]
gi|300946850|ref|ZP_07161091.1| S1 RNA binding domain protein [Escherichia coli MS 116-1]
gi|300956736|ref|ZP_07169006.1| S1 RNA binding domain protein [Escherichia coli MS 175-1]
gi|301023059|ref|ZP_07186867.1| S1 RNA binding domain protein [Escherichia coli MS 196-1]
gi|301302285|ref|ZP_07208417.1| S1 RNA binding domain protein [Escherichia coli MS 124-1]
gi|301329714|ref|ZP_07222461.1| S1 RNA binding domain protein [Escherichia coli MS 78-1]
gi|301645847|ref|ZP_07245761.1| S1 RNA binding domain protein [Escherichia coli MS 146-1]
gi|307311929|ref|ZP_07591567.1| Tex-like protein [Escherichia coli W]
gi|309794677|ref|ZP_07689099.1| S1 RNA binding domain protein [Escherichia coli MS 145-7]
gi|312972329|ref|ZP_07786503.1| protein yhgF [Escherichia coli 1827-70]
gi|331644107|ref|ZP_08345236.1| protein YhgF [Escherichia coli H736]
gi|378711165|ref|YP_005276058.1| Tex-like protein [Escherichia coli KO11FL]
gi|386282926|ref|ZP_10060566.1| protein yhgF [Escherichia sp. 4_1_40B]
gi|386610769|ref|YP_006126255.1| transcriptional accessory protein [Escherichia coli W]
gi|386616190|ref|YP_006135856.1| hypothetical protein UMNK88_4174 [Escherichia coli UMNK88]
gi|386699651|ref|YP_006163488.1| putative transcriptional accessory protein [Escherichia coli
KO11FL]
gi|386711288|ref|YP_006175009.1| putative transcriptional accessory protein [Escherichia coli W]
gi|415779641|ref|ZP_11490282.1| protein yhgF [Escherichia coli 3431]
gi|415810572|ref|ZP_11502939.1| protein yhgF [Escherichia coli LT-68]
gi|415830971|ref|ZP_11516769.1| protein yhgF [Escherichia coli OK1357]
gi|415863036|ref|ZP_11536397.1| S1 RNA binding domain protein [Escherichia coli MS 85-1]
gi|415876579|ref|ZP_11542965.1| protein YhgF [Escherichia coli MS 79-10]
gi|416280354|ref|ZP_11645321.1| putative transcriptional accessory protein [Shigella boydii ATCC
9905]
gi|416344290|ref|ZP_11678164.1| putative transcriptional accessory protein [Escherichia coli
EC4100B]
gi|417135030|ref|ZP_11979815.1| Tex-like protein N-terminal domain protein [Escherichia coli
5.0588]
gi|417165496|ref|ZP_11999558.1| Tex-like protein N-terminal domain protein [Escherichia coli
99.0741]
gi|417221519|ref|ZP_12024959.1| Tex-like protein N-terminal domain protein [Escherichia coli
96.154]
gi|417264240|ref|ZP_12051634.1| Tex-like protein N-terminal domain protein [Escherichia coli
2.3916]
gi|417271197|ref|ZP_12058546.1| Tex-like protein N-terminal domain protein [Escherichia coli
2.4168]
gi|417276100|ref|ZP_12063432.1| Tex-like protein N-terminal domain protein [Escherichia coli
3.2303]
gi|417292554|ref|ZP_12079835.1| Tex-like protein N-terminal domain protein [Escherichia coli B41]
gi|417604275|ref|ZP_12254839.1| protein yhgF [Escherichia coli STEC_94C]
gi|417615007|ref|ZP_12265460.1| protein yhgF [Escherichia coli STEC_EH250]
gi|417620014|ref|ZP_12270419.1| protein yhgF [Escherichia coli G58-1]
gi|417636500|ref|ZP_12286709.1| protein yhgF [Escherichia coli STEC_S1191]
gi|417641312|ref|ZP_12291442.1| protein yhgF [Escherichia coli TX1999]
gi|417691750|ref|ZP_12340959.1| protein yhgF [Shigella boydii 5216-82]
gi|418305034|ref|ZP_12916828.1| protein yhgF [Escherichia coli UMNF18]
gi|419144491|ref|ZP_13689221.1| protein yhgF [Escherichia coli DEC6A]
gi|419150223|ref|ZP_13694871.1| transcriptional accessory protein [Escherichia coli DEC6B]
gi|419161221|ref|ZP_13705717.1| protein yhgF [Escherichia coli DEC6D]
gi|419166281|ref|ZP_13710731.1| transcriptional accessory protein [Escherichia coli DEC6E]
gi|419172243|ref|ZP_13716122.1| protein yhgF [Escherichia coli DEC7A]
gi|419177184|ref|ZP_13720994.1| transcriptional accessory protein [Escherichia coli DEC7B]
gi|419182806|ref|ZP_13726415.1| transcriptional accessory protein [Escherichia coli DEC7C]
gi|419188426|ref|ZP_13731931.1| transcriptional accessory protein [Escherichia coli DEC7D]
gi|419193555|ref|ZP_13737000.1| protein yhgF [Escherichia coli DEC7E]
gi|419280034|ref|ZP_13822276.1| transcriptional accessory protein [Escherichia coli DEC10E]
gi|419377461|ref|ZP_13918480.1| transcriptional accessory protein [Escherichia coli DEC14B]
gi|419382799|ref|ZP_13923741.1| transcriptional accessory protein [Escherichia coli DEC14C]
gi|419393543|ref|ZP_13934344.1| transcriptional accessory protein [Escherichia coli DEC15A]
gi|419398646|ref|ZP_13939408.1| transcriptional accessory protein [Escherichia coli DEC15B]
gi|419403928|ref|ZP_13944646.1| transcriptional accessory protein [Escherichia coli DEC15C]
gi|419409086|ref|ZP_13949770.1| transcriptional accessory protein [Escherichia coli DEC15D]
gi|419414637|ref|ZP_13955271.1| transcriptional accessory protein [Escherichia coli DEC15E]
gi|419811688|ref|ZP_14336561.1| putative transcriptional accessory protein [Escherichia coli
O32:H37 str. P4]
gi|419862174|ref|ZP_14384790.1| putative transcriptional accessory protein [Escherichia coli
O103:H25 str. CVM9340]
gi|419926787|ref|ZP_14444534.1| putative transcriptional accessory protein [Escherichia coli 541-1]
gi|419940270|ref|ZP_14457020.1| putative transcriptional accessory protein [Escherichia coli 75]
gi|420387657|ref|ZP_14886996.1| protein yhgF [Escherichia coli EPECa12]
gi|421776624|ref|ZP_16213227.1| Tex-like protein [Escherichia coli AD30]
gi|422353306|ref|ZP_16434066.1| S1 RNA binding domain protein [Escherichia coli MS 117-3]
gi|422763724|ref|ZP_16817478.1| tex protein containing protein [Escherichia coli E1167]
gi|422773468|ref|ZP_16827152.1| tex protein containing protein [Escherichia coli E482]
gi|422960935|ref|ZP_16972128.1| protein yhgF [Escherichia coli H494]
gi|423702909|ref|ZP_17677341.1| protein yhgF [Escherichia coli H730]
gi|425116969|ref|ZP_18518754.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli 8.0566]
gi|425121719|ref|ZP_18523402.1| protein yhgF [Escherichia coli 8.0569]
gi|425285184|ref|ZP_18676211.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli TW00353]
gi|425307196|ref|ZP_18696872.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli N1]
gi|432366855|ref|ZP_19609972.1| protein yhgF [Escherichia coli KTE10]
gi|432418929|ref|ZP_19661522.1| protein yhgF [Escherichia coli KTE44]
gi|432482711|ref|ZP_19724661.1| protein yhgF [Escherichia coli KTE210]
gi|432528263|ref|ZP_19765339.1| protein yhgF [Escherichia coli KTE233]
gi|432535774|ref|ZP_19772733.1| protein yhgF [Escherichia coli KTE234]
gi|432565773|ref|ZP_19802333.1| protein yhgF [Escherichia coli KTE51]
gi|432577634|ref|ZP_19814083.1| protein yhgF [Escherichia coli KTE56]
gi|432629035|ref|ZP_19865003.1| protein yhgF [Escherichia coli KTE77]
gi|432638611|ref|ZP_19874476.1| protein yhgF [Escherichia coli KTE81]
gi|432687223|ref|ZP_19922513.1| protein yhgF [Escherichia coli KTE156]
gi|432688677|ref|ZP_19923947.1| protein yhgF [Escherichia coli KTE161]
gi|432706140|ref|ZP_19941235.1| protein yhgF [Escherichia coli KTE171]
gi|432738903|ref|ZP_19973637.1| protein yhgF [Escherichia coli KTE42]
gi|432751854|ref|ZP_19986433.1| protein yhgF [Escherichia coli KTE29]
gi|432766789|ref|ZP_20001204.1| protein yhgF [Escherichia coli KTE48]
gi|432807637|ref|ZP_20041551.1| protein yhgF [Escherichia coli KTE91]
gi|432811115|ref|ZP_20044972.1| protein yhgF [Escherichia coli KTE101]
gi|432877470|ref|ZP_20095190.1| protein yhgF [Escherichia coli KTE154]
gi|432930759|ref|ZP_20131167.1| protein yhgF [Escherichia coli KTE184]
gi|432957258|ref|ZP_20148761.1| protein yhgF [Escherichia coli KTE197]
gi|433093771|ref|ZP_20280026.1| protein yhgF [Escherichia coli KTE138]
gi|433131957|ref|ZP_20317385.1| protein yhgF [Escherichia coli KTE163]
gi|433136648|ref|ZP_20321978.1| protein yhgF [Escherichia coli KTE166]
gi|433195430|ref|ZP_20379405.1| protein yhgF [Escherichia coli KTE90]
gi|442593928|ref|ZP_21011854.1| Transcription accessory protein (S1 RNA-binding domain)
[Escherichia coli O10:K5(L):H4 str. ATCC 23506]
gi|443619470|ref|YP_007383326.1| transcriptional accessory protein [Escherichia coli APEC O78]
gi|450223038|ref|ZP_21897097.1| transcriptional accessory protein [Escherichia coli O08]
gi|157068564|gb|ABV07819.1| protein yhgF [Escherichia coli HS]
gi|187427364|gb|ACD06638.1| putative transcriptional accessory protein [Shigella boydii CDC
3083-94]
gi|190902086|gb|EDV61831.1| putative transcriptional accessory protein [Escherichia coli B7A]
gi|209914122|dbj|BAG79196.1| conserved hypothetical protein [Escherichia coli SE11]
gi|218362724|emb|CAR00350.1| transcriptional accessory protein [Escherichia coli IAI1]
gi|291321839|gb|EFE61270.1| transcriptional accessory protein [Escherichia coli B088]
gi|299880981|gb|EFI89192.1| S1 RNA binding domain protein [Escherichia coli MS 196-1]
gi|300316467|gb|EFJ66251.1| S1 RNA binding domain protein [Escherichia coli MS 175-1]
gi|300400812|gb|EFJ84350.1| S1 RNA binding domain protein [Escherichia coli MS 84-1]
gi|300413621|gb|EFJ96931.1| S1 RNA binding domain protein [Escherichia coli MS 115-1]
gi|300417107|gb|EFK00418.1| S1 RNA binding domain protein [Escherichia coli MS 182-1]
gi|300453505|gb|EFK17125.1| S1 RNA binding domain protein [Escherichia coli MS 116-1]
gi|300532289|gb|EFK53351.1| S1 RNA binding domain protein [Escherichia coli MS 107-1]
gi|300842448|gb|EFK70208.1| S1 RNA binding domain protein [Escherichia coli MS 124-1]
gi|300844199|gb|EFK71959.1| S1 RNA binding domain protein [Escherichia coli MS 78-1]
gi|301075836|gb|EFK90642.1| S1 RNA binding domain protein [Escherichia coli MS 146-1]
gi|306908073|gb|EFN38573.1| Tex-like protein [Escherichia coli W]
gi|308121727|gb|EFO58989.1| S1 RNA binding domain protein [Escherichia coli MS 145-7]
gi|310334706|gb|EFQ00911.1| protein yhgF [Escherichia coli 1827-70]
gi|315062686|gb|ADT77013.1| predicted transcriptional accessory protein [Escherichia coli W]
gi|315255997|gb|EFU35965.1| S1 RNA binding domain protein [Escherichia coli MS 85-1]
gi|315614675|gb|EFU95315.1| protein yhgF [Escherichia coli 3431]
gi|320181897|gb|EFW56803.1| putative transcriptional accessory protein [Shigella boydii ATCC
9905]
gi|320199577|gb|EFW74167.1| putative transcriptional accessory protein [Escherichia coli
EC4100B]
gi|323174040|gb|EFZ59668.1| protein yhgF [Escherichia coli LT-68]
gi|323182867|gb|EFZ68268.1| protein yhgF [Escherichia coli OK1357]
gi|323376726|gb|ADX48994.1| Tex-like protein [Escherichia coli KO11FL]
gi|323939373|gb|EGB35584.1| tex protein containing protein [Escherichia coli E482]
gi|324018697|gb|EGB87916.1| S1 RNA binding domain protein [Escherichia coli MS 117-3]
gi|324116398|gb|EGC10317.1| tex protein containing protein [Escherichia coli E1167]
gi|331036401|gb|EGI08627.1| protein YhgF [Escherichia coli H736]
gi|332085555|gb|EGI90721.1| protein yhgF [Shigella boydii 5216-82]
gi|332345359|gb|AEE58693.1| conserved hypothetical protein [Escherichia coli UMNK88]
gi|339417132|gb|AEJ58804.1| protein yhgF [Escherichia coli UMNF18]
gi|342928669|gb|EGU97391.1| protein YhgF [Escherichia coli MS 79-10]
gi|345347643|gb|EGW79947.1| protein yhgF [Escherichia coli STEC_94C]
gi|345359398|gb|EGW91575.1| protein yhgF [Escherichia coli STEC_EH250]
gi|345371311|gb|EGX03282.1| protein yhgF [Escherichia coli G58-1]
gi|345385388|gb|EGX15233.1| protein yhgF [Escherichia coli STEC_S1191]
gi|345391336|gb|EGX21129.1| protein yhgF [Escherichia coli TX1999]
gi|371593465|gb|EHN82346.1| protein yhgF [Escherichia coli H494]
gi|377989514|gb|EHV52680.1| transcriptional accessory protein [Escherichia coli DEC6B]
gi|377990736|gb|EHV53894.1| protein yhgF [Escherichia coli DEC6A]
gi|378004772|gb|EHV67783.1| protein yhgF [Escherichia coli DEC6D]
gi|378007016|gb|EHV69986.1| transcriptional accessory protein [Escherichia coli DEC6E]
gi|378012981|gb|EHV75908.1| protein yhgF [Escherichia coli DEC7A]
gi|378021578|gb|EHV84280.1| transcriptional accessory protein [Escherichia coli DEC7C]
gi|378025120|gb|EHV87767.1| transcriptional accessory protein [Escherichia coli DEC7D]
gi|378029851|gb|EHV92456.1| transcriptional accessory protein [Escherichia coli DEC7B]
gi|378035934|gb|EHV98486.1| protein yhgF [Escherichia coli DEC7E]
gi|378124947|gb|EHW86350.1| transcriptional accessory protein [Escherichia coli DEC10E]
gi|378216174|gb|EHX76462.1| transcriptional accessory protein [Escherichia coli DEC14B]
gi|378224740|gb|EHX84941.1| transcriptional accessory protein [Escherichia coli DEC14C]
gi|378235209|gb|EHX95281.1| transcriptional accessory protein [Escherichia coli DEC15A]
gi|378240548|gb|EHY00518.1| transcriptional accessory protein [Escherichia coli DEC15B]
gi|378244231|gb|EHY04175.1| transcriptional accessory protein [Escherichia coli DEC15C]
gi|378252538|gb|EHY12427.1| transcriptional accessory protein [Escherichia coli DEC15D]
gi|378256661|gb|EHY16509.1| transcriptional accessory protein [Escherichia coli DEC15E]
gi|383391178|gb|AFH16136.1| putative transcriptional accessory protein [Escherichia coli
KO11FL]
gi|383406980|gb|AFH13223.1| putative transcriptional accessory protein [Escherichia coli W]
gi|385155457|gb|EIF17460.1| putative transcriptional accessory protein [Escherichia coli
O32:H37 str. P4]
gi|385709643|gb|EIG46640.1| protein yhgF [Escherichia coli H730]
gi|386119927|gb|EIG68564.1| protein yhgF [Escherichia sp. 4_1_40B]
gi|386152884|gb|EIH04173.1| Tex-like protein N-terminal domain protein [Escherichia coli
5.0588]
gi|386172476|gb|EIH44506.1| Tex-like protein N-terminal domain protein [Escherichia coli
99.0741]
gi|386201321|gb|EII00312.1| Tex-like protein N-terminal domain protein [Escherichia coli
96.154]
gi|386221949|gb|EII44378.1| Tex-like protein N-terminal domain protein [Escherichia coli
2.3916]
gi|386234897|gb|EII66873.1| Tex-like protein N-terminal domain protein [Escherichia coli
2.4168]
gi|386241351|gb|EII78269.1| Tex-like protein N-terminal domain protein [Escherichia coli
3.2303]
gi|386254876|gb|EIJ04566.1| Tex-like protein N-terminal domain protein [Escherichia coli B41]
gi|388345699|gb|EIL11448.1| putative transcriptional accessory protein [Escherichia coli
O103:H25 str. CVM9340]
gi|388403854|gb|EIL64353.1| putative transcriptional accessory protein [Escherichia coli 75]
gi|388408807|gb|EIL69139.1| putative transcriptional accessory protein [Escherichia coli 541-1]
gi|391302794|gb|EIQ60644.1| protein yhgF [Escherichia coli EPECa12]
gi|408199570|gb|EKI24769.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli TW00353]
gi|408226101|gb|EKI49760.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli N1]
gi|408458312|gb|EKJ82100.1| Tex-like protein [Escherichia coli AD30]
gi|408564602|gb|EKK40704.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli 8.0566]
gi|408565738|gb|EKK41820.1| protein yhgF [Escherichia coli 8.0569]
gi|430891658|gb|ELC14184.1| protein yhgF [Escherichia coli KTE10]
gi|430936707|gb|ELC56975.1| protein yhgF [Escherichia coli KTE44]
gi|431004327|gb|ELD19553.1| protein yhgF [Escherichia coli KTE210]
gi|431058015|gb|ELD67425.1| protein yhgF [Escherichia coli KTE234]
gi|431060886|gb|ELD70208.1| protein yhgF [Escherichia coli KTE233]
gi|431090369|gb|ELD96138.1| protein yhgF [Escherichia coli KTE51]
gi|431112728|gb|ELE16410.1| protein yhgF [Escherichia coli KTE56]
gi|431160905|gb|ELE61406.1| protein yhgF [Escherichia coli KTE77]
gi|431168933|gb|ELE69165.1| protein yhgF [Escherichia coli KTE81]
gi|431219658|gb|ELF17052.1| protein yhgF [Escherichia coli KTE156]
gi|431235979|gb|ELF31193.1| protein yhgF [Escherichia coli KTE161]
gi|431240820|gb|ELF35268.1| protein yhgF [Escherichia coli KTE171]
gi|431279931|gb|ELF70878.1| protein yhgF [Escherichia coli KTE42]
gi|431293794|gb|ELF84077.1| protein yhgF [Escherichia coli KTE29]
gi|431307386|gb|ELF95678.1| protein yhgF [Escherichia coli KTE48]
gi|431353078|gb|ELG39836.1| protein yhgF [Escherichia coli KTE91]
gi|431360277|gb|ELG46888.1| protein yhgF [Escherichia coli KTE101]
gi|431418172|gb|ELH00586.1| protein yhgF [Escherichia coli KTE154]
gi|431460810|gb|ELH41095.1| protein yhgF [Escherichia coli KTE184]
gi|431464827|gb|ELH44945.1| protein yhgF [Escherichia coli KTE197]
gi|431607708|gb|ELI77063.1| protein yhgF [Escherichia coli KTE138]
gi|431643732|gb|ELJ11422.1| protein yhgF [Escherichia coli KTE163]
gi|431653789|gb|ELJ20866.1| protein yhgF [Escherichia coli KTE166]
gi|431713502|gb|ELJ77736.1| protein yhgF [Escherichia coli KTE90]
gi|441606201|emb|CCP97134.1| Transcription accessory protein (S1 RNA-binding domain)
[Escherichia coli O10:K5(L):H4 str. ATCC 23506]
gi|443423978|gb|AGC88882.1| transcriptional accessory protein [Escherichia coli APEC O78]
gi|449314531|gb|EMD04697.1| transcriptional accessory protein [Escherichia coli O08]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|451341014|ref|ZP_21911492.1| Transcription accessory protein [Amycolatopsis azurea DSM 43854]
gi|449416127|gb|EMD21899.1| Transcription accessory protein [Amycolatopsis azurea DSM 43854]
Length = 789
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 49/81 (60%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAFID G DGL HVS LS NFVKD +V G VKV+++
Sbjct: 653 DLKPGMRLEGVVTNVAAFGAFIDVGVHQDGLAHVSALSKNFVKDPREVVKPGDIVKVKVL 712
Query: 204 EANAETGRISLTMRESDDISK 224
E + RISLT+R D+ K
Sbjct: 713 EVDVPRKRISLTLRLDDEPGK 733
>gi|317130070|ref|YP_004096352.1| RNA binding S1 domain-containing protein [Bacillus cellulosilyticus
DSM 2522]
gi|315475018|gb|ADU31621.1| RNA binding S1 domain protein [Bacillus cellulosilyticus DSM 2522]
Length = 137
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 50/72 (69%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G+ GKV I+PFGAFI GLVH+S ++ FVKD+ +SVG EVKV+++ +
Sbjct: 8 GSIVEGKVTGIKPFGAFIALDDQKQGLVHISHIAHGFVKDINEHLSVGDEVKVKVLSIDE 67
Query: 208 ETGRISLTMRES 219
ETG+ISL++RE+
Sbjct: 68 ETGKISLSIRET 79
>gi|237785763|ref|YP_002906468.1| putative transcriptional accessory protein [Corynebacterium
kroppenstedtii DSM 44385]
gi|237758675|gb|ACR17925.1| putative transcriptional accessory protein [Corynebacterium
kroppenstedtii DSM 44385]
Length = 750
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 55/89 (61%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAF+D G DGLVHVS +SD FV D +V GQ V+V
Sbjct: 600 KVSDLTPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSAMSDRFVSDPHDVVKSGQVVRV 659
Query: 201 RLIEANAETGRISLTMRESDDISKLQQQK 229
++++ + + RI L++R +D+ + Q++
Sbjct: 660 KVMDVDTDRQRIGLSLRLNDEPGERGQRR 688
Score = 39.3 bits (90), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 15/113 (13%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E +T F +G + LEGTV N+ GAF+ + ++G + S
Sbjct: 580 KPGRDPRPEFRTATFKEGIEKVSDLTPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSAM 639
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDDVGSNLQLTQG 346
SD ++ ++ GQ V V+V+ + R ++ L+++ D+ G Q QG
Sbjct: 640 SDRFVSDPH--DVVKSGQVVRVKVMDVDTDRQRIGLSLRLNDEPGERGQRRQG 690
>gi|160934895|ref|ZP_02082281.1| hypothetical protein CLOLEP_03770 [Clostridium leptum DSM 753]
gi|156866348|gb|EDO59720.1| Tex-like protein N-terminal domain protein [Clostridium leptum DSM
753]
Length = 722
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 56/92 (60%), Gaps = 7/92 (7%)
Query: 134 KSEMPP-------VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVK 186
+ E+PP ++ +DL PG TG VR++ FGAF+D G DGLVH+S++ + ++K
Sbjct: 628 RDELPPPLLRTDILELKDLKPGMELTGTVRNVIDFGAFVDIGVHQDGLVHISQICNKYIK 687
Query: 187 DVGSIVSVGQEVKVRLIEANAETGRISLTMRE 218
++ VG VKV ++ A+ RI LTM+E
Sbjct: 688 HPSEVLKVGDIVKVWVLNADPVKKRIGLTMKE 719
>gi|432399349|ref|ZP_19642123.1| protein yhgF [Escherichia coli KTE25]
gi|432408474|ref|ZP_19651177.1| protein yhgF [Escherichia coli KTE28]
gi|432501958|ref|ZP_19743709.1| protein yhgF [Escherichia coli KTE216]
gi|432696268|ref|ZP_19931460.1| protein yhgF [Escherichia coli KTE162]
gi|432724867|ref|ZP_19959780.1| protein yhgF [Escherichia coli KTE17]
gi|432729450|ref|ZP_19964324.1| protein yhgF [Escherichia coli KTE18]
gi|432743137|ref|ZP_19977851.1| protein yhgF [Escherichia coli KTE23]
gi|432890850|ref|ZP_20103705.1| protein yhgF [Escherichia coli KTE165]
gi|432922535|ref|ZP_20125379.1| protein yhgF [Escherichia coli KTE173]
gi|432929265|ref|ZP_20130315.1| protein yhgF [Escherichia coli KTE175]
gi|432982847|ref|ZP_20171617.1| protein yhgF [Escherichia coli KTE211]
gi|432992501|ref|ZP_20181159.1| protein yhgF [Escherichia coli KTE217]
gi|433098210|ref|ZP_20284382.1| protein yhgF [Escherichia coli KTE139]
gi|433107657|ref|ZP_20293618.1| protein yhgF [Escherichia coli KTE148]
gi|433112635|ref|ZP_20298489.1| protein yhgF [Escherichia coli KTE150]
gi|430913222|gb|ELC34352.1| protein yhgF [Escherichia coli KTE25]
gi|430927345|gb|ELC47909.1| protein yhgF [Escherichia coli KTE28]
gi|431026137|gb|ELD39212.1| protein yhgF [Escherichia coli KTE216]
gi|431231494|gb|ELF27255.1| protein yhgF [Escherichia coli KTE162]
gi|431262086|gb|ELF54076.1| protein yhgF [Escherichia coli KTE17]
gi|431271267|gb|ELF62406.1| protein yhgF [Escherichia coli KTE18]
gi|431281294|gb|ELF72197.1| protein yhgF [Escherichia coli KTE23]
gi|431431144|gb|ELH12922.1| protein yhgF [Escherichia coli KTE165]
gi|431435533|gb|ELH17142.1| protein yhgF [Escherichia coli KTE173]
gi|431440673|gb|ELH22001.1| protein yhgF [Escherichia coli KTE175]
gi|431489445|gb|ELH69072.1| protein yhgF [Escherichia coli KTE211]
gi|431491651|gb|ELH71255.1| protein yhgF [Escherichia coli KTE217]
gi|431612700|gb|ELI81912.1| protein yhgF [Escherichia coli KTE139]
gi|431624149|gb|ELI92770.1| protein yhgF [Escherichia coli KTE148]
gi|431625589|gb|ELI94167.1| protein yhgF [Escherichia coli KTE150]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|420393505|ref|ZP_14892750.1| transcriptional accessory protein [Escherichia coli EPEC C342-62]
gi|391310346|gb|EIQ68001.1| transcriptional accessory protein [Escherichia coli EPEC C342-62]
Length = 772
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 646 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 705
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 706 EVDLQRKRIALTMR 719
>gi|419949321|ref|ZP_14465566.1| putative transcriptional accessory protein [Escherichia coli CUMT8]
gi|388419286|gb|EIL79033.1| putative transcriptional accessory protein [Escherichia coli CUMT8]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|354595852|ref|ZP_09013869.1| Tex-like protein [Brenneria sp. EniD312]
gi|353673787|gb|EHD19820.1| Tex-like protein [Brenneria sp. EniD312]
Length = 775
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S L++ FV D +V G VKV+++
Sbjct: 646 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISALAERFVDDPHKVVKAGDIVKVKVM 705
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 706 EVDLQRKRIALTMR 719
>gi|417610039|ref|ZP_12260536.1| protein yhgF [Escherichia coli STEC_DG131-3]
gi|345355073|gb|EGW87286.1| protein yhgF [Escherichia coli STEC_DG131-3]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|417116557|ref|ZP_11967418.1| Tex-like protein N-terminal domain protein [Escherichia coli
1.2741]
gi|422784069|ref|ZP_16836852.1| tex protein containing protein [Escherichia coli TW10509]
gi|422801330|ref|ZP_16849826.1| tex protein containing protein [Escherichia coli M863]
gi|323966220|gb|EGB61656.1| tex protein containing protein [Escherichia coli M863]
gi|323974789|gb|EGB69901.1| tex protein containing protein [Escherichia coli TW10509]
gi|386139101|gb|EIG80256.1| Tex-like protein N-terminal domain protein [Escherichia coli
1.2741]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|188495896|ref|ZP_03003166.1| putative transcriptional accessory protein [Escherichia coli 53638]
gi|188491095|gb|EDU66198.1| putative transcriptional accessory protein [Escherichia coli 53638]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|425112172|ref|ZP_18514085.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli 6.0172]
gi|408547384|gb|EKK24779.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli 6.0172]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|403724668|ref|ZP_10946141.1| putative transcriptional accessory protein, partial [Gordonia
rhizosphera NBRC 16068]
gi|403205427|dbj|GAB90472.1| putative transcriptional accessory protein, partial [Gordonia
rhizosphera NBRC 16068]
Length = 538
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 70/127 (55%), Gaps = 11/127 (8%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAF+D G DGLVHVS ++D +V D +V GQ V+V
Sbjct: 387 KVADLKPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMADRYVSDPHEVVRSGQVVRV 446
Query: 201 RLIEANAETGRISLTMRESDDISKLQ---------QQKDA--TASGDKVRTTRRSTSKPG 249
++I+ + + RI L++R DD+ + Q+ A ++ GD+ + +RS + G
Sbjct: 447 KVIDVDIDRQRIGLSLRLDDDVKGARGSSGQKSGGQKPGAQKSSGGDRRQAGQRSGQRSG 506
Query: 250 QKRDEMK 256
+ +D +
Sbjct: 507 RGQDNRR 513
>gi|417184134|ref|ZP_12009826.1| Tex-like protein N-terminal domain protein [Escherichia coli
93.0624]
gi|386183696|gb|EIH66443.1| Tex-like protein N-terminal domain protein [Escherichia coli
93.0624]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|366161769|ref|ZP_09461631.1| putative transcriptional accessory protein [Escherichia sp.
TW09308]
gi|432373960|ref|ZP_19616991.1| protein yhgF [Escherichia coli KTE11]
gi|430893382|gb|ELC15706.1| protein yhgF [Escherichia coli KTE11]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|293416809|ref|ZP_06659446.1| transcriptional accessory protein [Escherichia coli B185]
gi|291431385|gb|EFF04370.1| transcriptional accessory protein [Escherichia coli B185]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|271968816|ref|YP_003343012.1| RNA binding S1 domain-containing protein [Streptosporangium roseum
DSM 43021]
gi|270511991|gb|ACZ90269.1| RNA binding S1 domain protein [Streptosporangium roseum DSM 43021]
Length = 797
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 52/84 (61%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAF+D G DGLVHVS LS NFVKD +V G V+V
Sbjct: 636 KLSDLTPGMLLEGVVTNVAAFGAFVDVGVHQDGLVHVSALSHNFVKDPREVVKPGDIVRV 695
Query: 201 RLIEANAETGRISLTMRESDDISK 224
++++ + RISLT+R D+ +K
Sbjct: 696 KVLDVDIPRKRISLTLRLEDEPAK 719
>gi|224477053|ref|YP_002634659.1| hypothetical protein Sca_1569 [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222421660|emb|CAL28474.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 716
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 50/74 (67%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL G +G VR++ FGAF+D G DGLVHVS+LS FVK+ IV+VG V V +
Sbjct: 638 EDLTKGMKLSGTVRNVVDFGAFVDIGVKQDGLVHVSQLSKRFVKNPMDIVNVGDIVDVWV 697
Query: 203 IEANAETGRISLTM 216
+ A+A+ ++SLTM
Sbjct: 698 LSADAQKNKVSLTM 711
>gi|157157022|ref|YP_001464864.1| protein yhgF [Escherichia coli E24377A]
gi|193061670|ref|ZP_03042767.1| putative transcriptional accessory protein [Escherichia coli E22]
gi|194427009|ref|ZP_03059561.1| putative transcriptional accessory protein [Escherichia coli B171]
gi|260846191|ref|YP_003223969.1| transcriptional accessory protein [Escherichia coli O103:H2 str.
12009]
gi|332281954|ref|ZP_08394367.1| predicted transcriptional accessory protein [Shigella sp. D9]
gi|404376780|ref|ZP_10981932.1| protein yhgF [Escherichia sp. 1_1_43]
gi|415795917|ref|ZP_11497374.1| protein yhgF [Escherichia coli E128010]
gi|417147034|ref|ZP_11987881.1| Tex-like protein N-terminal domain protein [Escherichia coli
1.2264]
gi|417157851|ref|ZP_11995475.1| Tex-like protein N-terminal domain protein [Escherichia coli
96.0497]
gi|417174626|ref|ZP_12004422.1| Tex-like protein N-terminal domain protein [Escherichia coli
3.2608]
gi|417250239|ref|ZP_12042023.1| Tex-like protein N-terminal domain protein [Escherichia coli
4.0967]
gi|417583003|ref|ZP_12233803.1| protein yhgF [Escherichia coli STEC_B2F1]
gi|417625476|ref|ZP_12275767.1| protein yhgF [Escherichia coli STEC_H.1.8]
gi|417668877|ref|ZP_12318416.1| protein yhgF [Escherichia coli STEC_O31]
gi|418040717|ref|ZP_12678953.1| transcriptional accessory protein [Escherichia coli W26]
gi|419291589|ref|ZP_13833673.1| transcriptional accessory protein [Escherichia coli DEC11A]
gi|419296876|ref|ZP_13838912.1| transcriptional accessory protein [Escherichia coli DEC11B]
gi|419302390|ref|ZP_13844382.1| protein yhgF [Escherichia coli DEC11C]
gi|419308404|ref|ZP_13850296.1| protein yhgF [Escherichia coli DEC11D]
gi|419313429|ref|ZP_13855287.1| protein yhgF [Escherichia coli DEC11E]
gi|419318843|ref|ZP_13860641.1| protein yhgF [Escherichia coli DEC12A]
gi|419325106|ref|ZP_13866793.1| transcriptional accessory protein [Escherichia coli DEC12B]
gi|419336535|ref|ZP_13878052.1| transcriptional accessory protein [Escherichia coli DEC12D]
gi|419341949|ref|ZP_13883403.1| transcriptional accessory protein [Escherichia coli DEC12E]
gi|419871282|ref|ZP_14393341.1| putative transcriptional accessory protein [Escherichia coli
O103:H2 str. CVM9450]
gi|422768803|ref|ZP_16822527.1| tex protein containing protein [Escherichia coli E1520]
gi|422778045|ref|ZP_16831696.1| tex protein containing protein [Escherichia coli H120]
gi|425424276|ref|ZP_18805430.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli 0.1288]
gi|432965166|ref|ZP_20154090.1| protein yhgF [Escherichia coli KTE203]
gi|157079052|gb|ABV18760.1| protein yhgF [Escherichia coli E24377A]
gi|192932460|gb|EDV85057.1| putative transcriptional accessory protein [Escherichia coli E22]
gi|194414970|gb|EDX31240.1| putative transcriptional accessory protein [Escherichia coli B171]
gi|226839080|gb|EEH71103.1| protein yhgF [Escherichia sp. 1_1_43]
gi|257761338|dbj|BAI32835.1| predicted transcriptional accessory protein [Escherichia coli
O103:H2 str. 12009]
gi|323162792|gb|EFZ48629.1| protein yhgF [Escherichia coli E128010]
gi|323934603|gb|EGB31003.1| tex protein containing protein [Escherichia coli E1520]
gi|323944371|gb|EGB40446.1| tex protein containing protein [Escherichia coli H120]
gi|332104306|gb|EGJ07652.1| predicted transcriptional accessory protein [Shigella sp. D9]
gi|345334783|gb|EGW67224.1| protein yhgF [Escherichia coli STEC_B2F1]
gi|345373540|gb|EGX05499.1| protein yhgF [Escherichia coli STEC_H.1.8]
gi|378125971|gb|EHW87368.1| transcriptional accessory protein [Escherichia coli DEC11A]
gi|378138705|gb|EHW99956.1| transcriptional accessory protein [Escherichia coli DEC11B]
gi|378145498|gb|EHX06662.1| protein yhgF [Escherichia coli DEC11D]
gi|378146961|gb|EHX08110.1| protein yhgF [Escherichia coli DEC11C]
gi|378155348|gb|EHX16407.1| protein yhgF [Escherichia coli DEC11E]
gi|378162449|gb|EHX23413.1| transcriptional accessory protein [Escherichia coli DEC12B]
gi|378166265|gb|EHX27191.1| protein yhgF [Escherichia coli DEC12A]
gi|378179759|gb|EHX40467.1| transcriptional accessory protein [Escherichia coli DEC12D]
gi|378183554|gb|EHX44196.1| transcriptional accessory protein [Escherichia coli DEC12E]
gi|383476434|gb|EID68377.1| transcriptional accessory protein [Escherichia coli W26]
gi|386162974|gb|EIH24770.1| Tex-like protein N-terminal domain protein [Escherichia coli
1.2264]
gi|386166601|gb|EIH33121.1| Tex-like protein N-terminal domain protein [Escherichia coli
96.0497]
gi|386177318|gb|EIH54797.1| Tex-like protein N-terminal domain protein [Escherichia coli
3.2608]
gi|386220560|gb|EII37024.1| Tex-like protein N-terminal domain protein [Escherichia coli
4.0967]
gi|388337461|gb|EIL03962.1| putative transcriptional accessory protein [Escherichia coli
O103:H2 str. CVM9450]
gi|397783408|gb|EJK94267.1| protein yhgF [Escherichia coli STEC_O31]
gi|408341414|gb|EKJ55867.1| polyribonucleotide nucleotidyltransferase Polynucleotide
phosphorylase [Escherichia coli 0.1288]
gi|431477281|gb|ELH57051.1| protein yhgF [Escherichia coli KTE203]
Length = 773
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|411011184|ref|ZP_11387513.1| S1 RNA-binding domain-containing protein [Aeromonas aquariorum
AAK1]
Length = 769
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 48/77 (62%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL+P G V ++ FGAF+D G DGLVH+S L+D FVKD +V G V+V
Sbjct: 642 KISDLVPEMVLEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDRFVKDPREVVKAGDIVRV 701
Query: 201 RLIEANAETGRISLTMR 217
+++E + RISLTMR
Sbjct: 702 KVLEVDVPRKRISLTMR 718
>gi|349610825|ref|ZP_08890149.1| hypothetical protein HMPREF1028_02124 [Neisseria sp. GT4A_CT1]
gi|348615543|gb|EGY65058.1| hypothetical protein HMPREF1028_02124 [Neisseria sp. GT4A_CT1]
Length = 757
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 60/110 (54%), Gaps = 12/110 (10%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL G G V ++ FGAF+D G DGLVH+S LS+ FV+D +V G VKV+++
Sbjct: 636 DLQVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAGDVVKVKVL 695
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRD 253
E +A RI+LTMR D+ +G + R S SK ++RD
Sbjct: 696 EVDAARKRIALTMRLDDE------------AGGATKGNRSSESKHFERRD 733
>gi|422021443|ref|ZP_16367955.1| transcriptional accessory protein [Providencia sneebia DSM 19967]
gi|414099301|gb|EKT60944.1| transcriptional accessory protein [Providencia sneebia DSM 19967]
Length = 777
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 58/105 (55%), Gaps = 12/105 (11%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+++V D +V G VKV+++
Sbjct: 646 DLTPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNSYVDDPHKVVKAGDIVKVKVL 705
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKP 248
+ + RI+LTMR L +Q GD +TRRS P
Sbjct: 706 DVDIARKRIALTMR-------LDEQ-----PGDANSSTRRSAQSP 738
>gi|408421227|ref|YP_006762641.1| RNA-binding S1 domain-containing protein [Desulfobacula toluolica
Tol2]
gi|405108440|emb|CCK81937.1| RNA-binding S1 domain protein [Desulfobacula toluolica Tol2]
Length = 711
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 53/77 (68%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL+PG G V ++ FGAF+D G DGLVH+S+++D FVKD IV+V Q + V +
Sbjct: 635 KDLVPGMKVPGIVTNVTAFGAFVDIGVHQDGLVHISQMADRFVKDPNEIVTVRQAITVTI 694
Query: 203 IEANAETGRISLTMRES 219
+E + + RISL+++++
Sbjct: 695 LEVDVKRKRISLSLKKT 711
>gi|420377406|ref|ZP_14877023.1| protein yhgF [Shigella flexneri 1235-66]
gi|391296196|gb|EIQ54303.1| protein yhgF [Shigella flexneri 1235-66]
Length = 561
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 458 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 517
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 518 EVDLQRKRIALTMR 531
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 15/121 (12%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT +F G + LEG V N+T GAF+ + ++G + S
Sbjct: 435 KPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSL 494
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDDVGSNLQLTQGVIHAATN 353
S+ + + ++ G V V+VL + R ++ LTM+ ++ G + V++A
Sbjct: 495 SNKFVED--PHTVVKAGDIVKVKVLEVDLQRKRIALTMRLDEQPGETTLVAAAVMNARKT 552
Query: 354 P 354
P
Sbjct: 553 P 553
>gi|227833405|ref|YP_002835112.1| transcriptional accessory protein [Corynebacterium aurimucosum ATCC
700975]
gi|262184393|ref|ZP_06043814.1| putative transcriptional accessory protein [Corynebacterium
aurimucosum ATCC 700975]
gi|227454421|gb|ACP33174.1| putative transcriptional accessory protein [Corynebacterium
aurimucosum ATCC 700975]
Length = 759
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 50/84 (59%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAFID G DGLVHVS +S FV D +V GQ VKV
Sbjct: 634 KVSDLKPGMILEGTVTNVAAFGAFIDIGVHQDGLVHVSAMSHKFVSDPHDVVRSGQVVKV 693
Query: 201 RLIEANAETGRISLTMRESDDISK 224
+++E + E RI L++R D+ K
Sbjct: 694 KVMEVDVERQRIGLSLRLDDEPGK 717
>gi|221068177|ref|ZP_03544282.1| RNA binding S1 domain protein [Comamonas testosteroni KF-1]
gi|220713200|gb|EED68568.1| RNA binding S1 domain protein [Comamonas testosteroni KF-1]
Length = 793
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 50/75 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL G T G V ++ FGAF+D G DGLVHVS++S F++D +V GQ VKV++
Sbjct: 659 KDLKEGMTLEGTVSNVAQFGAFVDLGVHQDGLVHVSQMSHKFIEDAREVVKTGQIVKVKV 718
Query: 203 IEANAETGRISLTMR 217
+E + + RISLTM+
Sbjct: 719 LEVDVDRKRISLTMK 733
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLR- 321
G LEGTV N+ + GAF+ L ++G + S+ S + ++ GQ V V+VL
Sbjct: 664 GMTLEGTVSNVAQFGAFVDLGVHQDGLVHVSQMSHKFIEDAR--EVVKTGQIVKVKVLEV 721
Query: 322 -ISRGQVTLTMK 332
+ R +++LTMK
Sbjct: 722 DVDRKRISLTMK 733
>gi|453068784|ref|ZP_21972055.1| transcriptional accessory protein [Rhodococcus qingshengii BKS
20-40]
gi|452764967|gb|EME23232.1| transcriptional accessory protein [Rhodococcus qingshengii BKS
20-40]
Length = 779
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 50/82 (60%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K L PG T G V ++ FGAF+D G DGLVHVS +S NFVKD +V G VKV
Sbjct: 633 KVAHLKPGMTLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSHNFVKDPREVVKSGDVVKV 692
Query: 201 RLIEANAETGRISLTMRESDDI 222
+++E + RI LT+R D++
Sbjct: 693 KVLEVDEARQRIGLTLRLDDEV 714
Score = 38.9 bits (89), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 15/106 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT F G + LEG V N+ GAF+ + ++G + S
Sbjct: 613 KPGRDPRPEFKTATFAAGIEKVAHLKPGMTLEGVVTNVAAFGAFVDIGVHQDGLVHVSAM 672
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDDVGS 339
S + + ++ G V V+VL + +R ++ LT++ +D+VG+
Sbjct: 673 SHNFVKDPR--EVVKSGDVVKVKVLEVDEARQRIGLTLRLDDEVGA 716
>gi|238788975|ref|ZP_04632765.1| hypothetical protein yfred0001_27860 [Yersinia frederiksenii ATCC
33641]
gi|238723002|gb|EEQ14652.1| hypothetical protein yfred0001_27860 [Yersinia frederiksenii ATCC
33641]
Length = 790
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 47/74 (63%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L+D FV D +V G VKV+++
Sbjct: 646 DLTPGMILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIVKVKVM 705
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 706 EIDLQRKRIALTMR 719
Score = 39.3 bits (90), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 15/109 (13%)
Query: 243 RSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLP 291
R KPG+ R E KT F +G + LEG+V N+T GAF+ + ++G +
Sbjct: 619 RELEKPGRDPRPEFKTATFAEGVETLNDLTPGMILEGSVTNVTNFGAFVDIGVHQDGLVH 678
Query: 292 TSEESDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDDVG 338
S +D + ++ G V V+V+ I R ++ LTM+ ++ G
Sbjct: 679 ISSLADKFVDD--PHKVVKAGDIVKVKVMEIDLQRKRIALTMRLDEQPG 725
>gi|229491353|ref|ZP_04385177.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|229321638|gb|EEN87435.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length = 779
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 50/82 (60%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K L PG T G V ++ FGAF+D G DGLVHVS +S NFVKD +V G VKV
Sbjct: 633 KVAHLKPGMTLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSHNFVKDPREVVKSGDVVKV 692
Query: 201 RLIEANAETGRISLTMRESDDI 222
+++E + RI LT+R D++
Sbjct: 693 KVLEVDEARQRIGLTLRLDDEV 714
Score = 38.9 bits (89), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 15/106 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT F G + LEG V N+ GAF+ + ++G + S
Sbjct: 613 KPGRDPRPEFKTATFAAGIEKVAHLKPGMTLEGVVTNVAAFGAFVDIGVHQDGLVHVSAM 672
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDDVGS 339
S + + ++ G V V+VL + +R ++ LT++ +D+VG+
Sbjct: 673 SHNFVKDPR--EVVKSGDVVKVKVLEVDEARQRIGLTLRLDDEVGA 716
>gi|226185059|dbj|BAH33163.1| putative transcriptional accessory protein [Rhodococcus
erythropolis PR4]
Length = 783
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 50/82 (60%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K L PG T G V ++ FGAF+D G DGLVHVS +S NFVKD +V G VKV
Sbjct: 633 KVAHLKPGMTLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSHNFVKDPREVVKSGDVVKV 692
Query: 201 RLIEANAETGRISLTMRESDDI 222
+++E + RI LT+R D++
Sbjct: 693 KVLEVDEARQRIGLTLRLDDEV 714
Score = 38.9 bits (89), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 15/106 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT F G + LEG V N+ GAF+ + ++G + S
Sbjct: 613 KPGRDPRPEFKTATFAAGIEKVAHLKPGMTLEGVVTNVAAFGAFVDIGVHQDGLVHVSAM 672
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDDVGS 339
S + + ++ G V V+VL + +R ++ LT++ +D+VG+
Sbjct: 673 SHNFVKDPR--EVVKSGDVVKVKVLEVDEARQRIGLTLRLDDEVGA 716
>gi|170767157|ref|ZP_02901610.1| putative transcriptional accessory protein [Escherichia albertii
TW07627]
gi|170124595|gb|EDS93526.1| putative transcriptional accessory protein [Escherichia albertii
TW07627]
Length = 773
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|423199187|ref|ZP_17185770.1| protein yhgF [Aeromonas hydrophila SSU]
gi|404629541|gb|EKB26288.1| protein yhgF [Aeromonas hydrophila SSU]
Length = 769
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 48/77 (62%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL+P G V ++ FGAF+D G DGLVH+S L+D FVKD +V G V+V
Sbjct: 642 KISDLVPEMVLEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDRFVKDPREVVKAGDIVRV 701
Query: 201 RLIEANAETGRISLTMR 217
+++E + RISLTMR
Sbjct: 702 KVLEVDVPRKRISLTMR 718
>gi|424828127|ref|ZP_18252868.1| RNA-binding protein [Clostridium sporogenes PA 3679]
gi|365979610|gb|EHN15663.1| RNA-binding protein [Clostridium sporogenes PA 3679]
Length = 718
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 50/74 (67%)
Query: 145 LIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIE 204
L P G VR++ FGAF+D G DGLVH+S+LSD+FVK +V VG V+VR++E
Sbjct: 645 LKPDMILMGTVRNVADFGAFVDIGVHQDGLVHISQLSDSFVKHPLDVVKVGDIVEVRILE 704
Query: 205 ANAETGRISLTMRE 218
+ + RISL+M++
Sbjct: 705 VDQKRNRISLSMKK 718
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP K + T+ L GTV+N+ GAF+ + ++G + S+ SD
Sbjct: 624 RDPREDLPKPILKTGIVDITQLKPDMILMGTVRNVADFGAFVDIGVHQDGLVHISQLSDS 683
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKK 333
+ + ++VG V VR+L + R +++L+MKK
Sbjct: 684 FVKHPL--DVVKVGDIVEVRILEVDQKRNRISLSMKK 718
>gi|345016986|ref|YP_004819339.1| Tex-like protein [Thermoanaerobacter wiegelii Rt8.B1]
gi|344032329|gb|AEM78055.1| LOW QUALITY PROTEIN: Tex-like protein [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 712
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
+L PG G VR++ FG F+D G TDGLVH+S +S ++K +VSVG VKVR++
Sbjct: 639 ELKPGMELMGTVRNVTDFGCFVDIGVHTDGLVHISEMSQGYIKHPLDVVSVGDIVKVRVL 698
Query: 204 EANAETGRISLTMR 217
+ E RISL+M+
Sbjct: 699 SVDIERNRISLSMK 712
Score = 45.4 bits (106), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP + D M + G +L GTV+N+T G F+ + +G + SE S
Sbjct: 619 RDPREDLPKPILRSDVMTINELKPGMELMGTVRNVTDFGCFVDIGVHTDGLVHISEMSQG 678
Query: 299 GFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMK 332
+ + S VG V VRVL I R +++L+MK
Sbjct: 679 YIKHPLDVVS--VGDIVKVRVLSVDIERNRISLSMK 712
>gi|336114826|ref|YP_004569593.1| RNA binding S1 domain-containing protein [Bacillus coagulans 2-6]
gi|335368256|gb|AEH54207.1| RNA binding S1 domain protein [Bacillus coagulans 2-6]
Length = 128
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 51/74 (68%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G +TGKV I+PFGAF+ T GLVH+S + +VKD+ V +G EVKV+++ +
Sbjct: 7 GNVYTGKVTGIKPFGAFVALDEETQGLVHISEIKHGYVKDIHDYVHIGDEVKVKVLSVDE 66
Query: 208 ETGRISLTMRESDD 221
E+G+ISL+M+ +++
Sbjct: 67 ESGKISLSMKATEE 80
>gi|225077089|ref|ZP_03720288.1| hypothetical protein NEIFLAOT_02142 [Neisseria flavescens
NRL30031/H210]
gi|224951646|gb|EEG32855.1| hypothetical protein NEIFLAOT_02142 [Neisseria flavescens
NRL30031/H210]
Length = 761
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 49/78 (62%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL G G V ++ FGAF+D G DGLVH+S LSD FV+D +V G VKV+++
Sbjct: 640 DLQVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSDKFVQDPREVVKAGDVVKVKVL 699
Query: 204 EANAETGRISLTMRESDD 221
E +A RI+LTMR D+
Sbjct: 700 EVDAARKRIALTMRLDDE 717
Score = 38.9 bits (89), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 15/105 (14%)
Query: 247 KPGQK-RDEMKTTKFVKG----------QDLEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E +T F +G LEG V N+ GAF+ + ++G + S
Sbjct: 617 KPGRDPRGEFQTASFAEGIREISDLQVGMILEGVVSNVANFGAFVDIGVHQDGLVHISAL 676
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDDVG 338
SD + ++ G V V+VL + +R ++ LTM+ +D+ G
Sbjct: 677 SDKFVQDPR--EVVKAGDVVKVKVLEVDAARKRIALTMRLDDEPG 719
>gi|402309577|ref|ZP_10828569.1| Tex-like protein N-terminal domain protein [Eubacterium sp. AS15]
gi|400372233|gb|EJP25181.1| Tex-like protein N-terminal domain protein [Eubacterium sp. AS15]
Length = 714
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 52/78 (66%)
Query: 140 VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
+K EDL G G VR++ FGAF+D G DGLVH+S+LSD F+K+ +VS+G V
Sbjct: 635 LKLEDLSEGMVLKGTVRNVLEFGAFVDIGVKNDGLVHISQLSDKFIKNPMEVVSIGDIVN 694
Query: 200 VRLIEANAETGRISLTMR 217
V++I + + ++SL+MR
Sbjct: 695 VKVIGIDLDRKKVSLSMR 712
Score = 42.4 bits (98), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 248 PGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGS 307
P + D +K +G L+GTV+N+ GAF+ + +G + S+ SD N M
Sbjct: 628 PVLRSDVLKLEDLSEGMVLKGTVRNVLEFGAFVDIGVKNDGLVHISQLSDKFIKNPM--E 685
Query: 308 SLQVGQEVSVRVLRI--SRGQVTLTMK 332
+ +G V+V+V+ I R +V+L+M+
Sbjct: 686 VVSIGDIVNVKVIGIDLDRKKVSLSMR 712
>gi|423122485|ref|ZP_17110169.1| protein yhgF [Klebsiella oxytoca 10-5246]
gi|376392302|gb|EHT04967.1| protein yhgF [Klebsiella oxytoca 10-5246]
Length = 801
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS+ FV D ++V G V+V+++
Sbjct: 672 DLLPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVDDPHTVVKAGDIVQVKVM 731
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 732 EVDLQRKRIALTMR 745
>gi|299530284|ref|ZP_07043709.1| RNA-binding S1 domain-containing protein [Comamonas testosteroni
S44]
gi|298721655|gb|EFI62587.1| RNA-binding S1 domain-containing protein [Comamonas testosteroni
S44]
Length = 793
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 50/75 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL G T G V ++ FGAF+D G DGLVHVS++S F++D +V GQ VKV++
Sbjct: 659 KDLKEGMTLEGTVSNVAQFGAFVDLGVHQDGLVHVSQMSHKFIEDAREVVKTGQIVKVKV 718
Query: 203 IEANAETGRISLTMR 217
+E + + RISLTM+
Sbjct: 719 LEVDVDRKRISLTMK 733
Score = 39.7 bits (91), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLR- 321
G LEGTV N+ + GAF+ L ++G + S+ S + ++ GQ V V+VL
Sbjct: 664 GMTLEGTVSNVAQFGAFVDLGVHQDGLVHVSQMSHKFIEDAR--EVVKTGQIVKVKVLEV 721
Query: 322 -ISRGQVTLTMK 332
+ R +++LTMK
Sbjct: 722 DVDRKRISLTMK 733
>gi|389783180|ref|ZP_10194674.1| transcriptional accessory protein [Rhodanobacter spathiphylli B39]
gi|388435118|gb|EIL92036.1| transcriptional accessory protein [Rhodanobacter spathiphylli B39]
Length = 777
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 56/100 (56%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G+V ++ FGAF+D G DGLVHVS LS FVKD V G VKV++
Sbjct: 648 KDLRPGMILEGRVTNVAAFGAFVDIGVHQDGLVHVSALSHTFVKDPRDAVKAGDIVKVKV 707
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTR 242
+E + RI L+MR D+ + +++ A G R R
Sbjct: 708 MEVDLPRQRIGLSMRLDDEPGQTRERGAGAADGRGPRDGR 747
>gi|213423738|ref|ZP_03356718.1| putative transcription accessory protein [Salmonella enterica
subsp. enterica serovar Typhi str. E01-6750]
Length = 349
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS FV D ++V G VKV+++
Sbjct: 220 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVL 279
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 280 EVDLQRKRIALTMR 293
>gi|417431372|ref|ZP_12161228.1| Transcription accessory protein, partial [Salmonella enterica
subsp. enterica serovar Mississippi str. A4-633]
gi|353614755|gb|EHC66490.1| Transcription accessory protein, partial [Salmonella enterica
subsp. enterica serovar Mississippi str. A4-633]
Length = 401
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS FV D ++V G VKV+++
Sbjct: 318 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVL 377
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 378 EVDLQRKRIALTMR 391
>gi|269126870|ref|YP_003300240.1| RNA binding S1 domain-containing protein [Thermomonospora curvata
DSM 43183]
gi|268311828|gb|ACY98202.1| RNA binding S1 domain protein [Thermomonospora curvata DSM 43183]
Length = 795
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 49/79 (62%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL PG G V ++ FGAF+D G DGLVH+S +S N+V D +V G VKVR+
Sbjct: 658 EDLKPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHISAMSKNYVSDPREVVKPGDIVKVRV 717
Query: 203 IEANAETGRISLTMRESDD 221
++ + RISLT+R DD
Sbjct: 718 LDVDIPRKRISLTLRLDDD 736
>gi|433604374|ref|YP_007036743.1| hypothetical protein BN6_25560 [Saccharothrix espanaensis DSM
44229]
gi|407882227|emb|CCH29870.1| hypothetical protein BN6_25560 [Saccharothrix espanaensis DSM
44229]
Length = 776
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 49/78 (62%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LSDN+VKD +V G V+V+++
Sbjct: 642 DLQPGMVLEGVVTNVAAFGAFVDIGVHQDGLVHISALSDNYVKDPRDVVKSGDVVRVKVL 701
Query: 204 EANAETGRISLTMRESDD 221
E + RI LT+R D+
Sbjct: 702 EVDIPRKRIGLTLRLQDE 719
>gi|392945328|ref|ZP_10310970.1| transcriptional accessory protein [Frankia sp. QA3]
gi|392288622|gb|EIV94646.1| transcriptional accessory protein [Frankia sp. QA3]
Length = 860
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 50/79 (63%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG T G V ++ FGAF+D G DGLVHVS +S NFV D +V G V V+++
Sbjct: 658 DLVPGMTLEGTVTNVAAFGAFVDVGVHQDGLVHVSAMSKNFVNDPREVVKPGDIVTVKVL 717
Query: 204 EANAETGRISLTMRESDDI 222
+ + RISLT+R D+I
Sbjct: 718 DVDIPRKRISLTLRLDDEI 736
>gi|418945523|ref|ZP_13498334.1| putative transcriptional accessory protein, partial [Escherichia
coli O157:H43 str. T22]
gi|375319161|gb|EHS65396.1| putative transcriptional accessory protein, partial [Escherichia
coli O157:H43 str. T22]
Length = 562
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 454 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 513
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 514 EVDLQRKRIALTMR 527
>gi|325921819|ref|ZP_08183636.1| transcriptional accessory protein [Xanthomonas gardneri ATCC 19865]
gi|325547696|gb|EGD18733.1| transcriptional accessory protein [Xanthomonas gardneri ATCC 19865]
Length = 788
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 47/76 (61%)
Query: 145 LIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIE 204
L PG G V ++ FGAF+D G DGLVH+S LSD FVKD +V G VKV+++E
Sbjct: 652 LKPGMVLEGVVSNVAAFGAFVDIGVHQDGLVHISALSDTFVKDPRDVVKAGDIVKVKVLE 711
Query: 205 ANAETGRISLTMRESD 220
+ RI+LT R SD
Sbjct: 712 VDVARKRIALTCRLSD 727
>gi|255528150|ref|ZP_05394977.1| RNA binding S1 domain protein [Clostridium carboxidivorans P7]
gi|255508163|gb|EET84576.1| RNA binding S1 domain protein [Clostridium carboxidivorans P7]
Length = 725
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 55/90 (61%), Gaps = 7/90 (7%)
Query: 134 KSEMP-PVKNEDLI------PGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVK 186
+ EMP PV +I PG TG VR++ FGAF+D G DGLVH+S+LSD FVK
Sbjct: 629 REEMPKPVLKTGIIDMAQLKPGMQLTGTVRNVADFGAFVDIGVHQDGLVHISQLSDKFVK 688
Query: 187 DVGSIVSVGQEVKVRLIEANAETGRISLTM 216
+V VG V+V +IE + + RI+LT+
Sbjct: 689 HPLDVVQVGDIVEVTVIEVDEKRKRIALTI 718
Score = 38.9 bits (89), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP K + + G L GTV+N+ GAF+ + ++G + S+ SD
Sbjct: 626 RDPREEMPKPVLKTGIIDMAQLKPGMQLTGTVRNVADFGAFVDIGVHQDGLVHISQLSDK 685
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKK 333
+ + +QVG V V V+ + R ++ LT++K
Sbjct: 686 FVKHPL--DVVQVGDIVEVTVIEVDEKRKRIALTIEK 720
>gi|157148991|ref|YP_001456310.1| hypothetical protein CKO_04829 [Citrobacter koseri ATCC BAA-895]
gi|157086196|gb|ABV15874.1| hypothetical protein CKO_04829 [Citrobacter koseri ATCC BAA-895]
Length = 776
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
>gi|92114773|ref|YP_574701.1| RNA binding S1 [Chromohalobacter salexigens DSM 3043]
gi|91797863|gb|ABE60002.1| RNA binding S1 [Chromohalobacter salexigens DSM 3043]
Length = 804
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 49/78 (62%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S LS+ F++D +V G VKV++
Sbjct: 676 KDLEPGMVLEGSVTNVTHFGAFVDIGVHQDGLVHISALSETFIEDPRQVVKAGDIVKVKV 735
Query: 203 IEANAETGRISLTMRESD 220
+E + E RI L+MR D
Sbjct: 736 MEVDLERARIGLSMRMGD 753
>gi|453366190|dbj|GAC78524.1| putative transcriptional accessory protein [Gordonia malaquae NBRC
108250]
Length = 799
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 51/81 (62%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAFID G DGLVHVS +SD FV D +V GQ V+V
Sbjct: 647 KVSDLRPGMVLEGVVTNVAAFGAFIDVGVHQDGLVHVSAMSDKFVSDPHDVVRSGQVVRV 706
Query: 201 RLIEANAETGRISLTMRESDD 221
+++E + + RI L++R +D+
Sbjct: 707 KVMEVDVDRQRIGLSLRLNDE 727
>gi|443290176|ref|ZP_21029270.1| transcriptional accessory protein [Micromonospora lupini str. Lupac
08]
gi|385887088|emb|CCH17344.1| transcriptional accessory protein [Micromonospora lupini str. Lupac
08]
Length = 822
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 59/111 (53%), Gaps = 10/111 (9%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAF+D G DGLVHVS +S FVKD +V G VKV
Sbjct: 648 KIGDLTPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSRTFVKDPREVVKSGDVVKV 707
Query: 201 RLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQK 251
R+++ + RISLT+R D+ A+G RT++ P Q+
Sbjct: 708 RVLDVDVPRKRISLTLRLEDE----------PAAGGGGRTSQEGRGGPAQR 748
>gi|417328939|ref|ZP_12113933.1| Transcription accessory protein, partial [Salmonella enterica
subsp. enterica serovar Adelaide str. A4-669]
gi|353566409|gb|EHC31893.1| Transcription accessory protein, partial [Salmonella enterica
subsp. enterica serovar Adelaide str. A4-669]
Length = 410
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS FV D ++V G VKV+++
Sbjct: 318 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVL 377
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 378 EVDLQRKRIALTMR 391
>gi|254501681|ref|ZP_05113832.1| S1 RNA binding domain protein [Labrenzia alexandrii DFL-11]
gi|222437752|gb|EEE44431.1| S1 RNA binding domain protein [Labrenzia alexandrii DFL-11]
Length = 809
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVHVS+L+D FV D ++V G VKV ++
Sbjct: 668 DLKPGMKLEGTVTNVTNFGAFVDVGVHQDGLVHVSQLADKFVGDPHTVVKAGDIVKVTIL 727
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATA 233
E + RIS+TM+ D Q QK+ TA
Sbjct: 728 EVDIPRKRISMTMKSQAD---YQGQKERTA 754
>gi|213586558|ref|ZP_03368384.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Typhi str. E98-0664]
Length = 502
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS FV D ++V G VKV+++
Sbjct: 373 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVL 432
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 433 EVDLQRKRIALTMR 446
>gi|606342|gb|AAA58205.1| ORF_o622; reading frame open far upstream of start; possible
frameshift, linking to previous ORF [Escherichia coli
str. K-12 substr. MG1655]
Length = 622
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 496 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 555
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 556 EVDLQRKRIALTMR 569
>gi|414070131|ref|ZP_11406119.1| transcription accessory protein [Pseudoalteromonas sp. Bsw20308]
gi|410807436|gb|EKS13414.1| transcription accessory protein [Pseudoalteromonas sp. Bsw20308]
Length = 775
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 50/82 (60%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAF+D G DGLVH+S +++ F+ D +V G VKV
Sbjct: 642 KISDLKPGMILEGVVSNVANFGAFVDVGVHQDGLVHISAITNKFISDPREVVKAGDIVKV 701
Query: 201 RLIEANAETGRISLTMRESDDI 222
+++E +A RIS TMR D+I
Sbjct: 702 KVVEVDAARKRISFTMRLDDEI 723
>gi|334702718|ref|ZP_08518584.1| S1 RNA-binding domain-containing protein [Aeromonas caviae Ae398]
Length = 768
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 48/77 (62%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL+P G V ++ FGAF+D G DGLVH+S L+D FVKD +V G V+V
Sbjct: 642 KISDLVPEMVLEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDRFVKDPREVVKAGDIVRV 701
Query: 201 RLIEANAETGRISLTMR 217
+++E + RISLTMR
Sbjct: 702 KVLEVDVPRKRISLTMR 718
>gi|329894050|ref|ZP_08270035.1| Transcription accessory protein (S1 RNA-binding domain) [gamma
proteobacterium IMCC3088]
gi|328923222|gb|EGG30542.1| Transcription accessory protein (S1 RNA-binding domain) [gamma
proteobacterium IMCC3088]
Length = 771
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 50/81 (61%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL G G V ++ FGAF+D G DGLVH+S L+D FVKD +V GQ VKV
Sbjct: 641 KISDLESGMVLEGTVTNVTNFGAFVDVGVHQDGLVHISALADKFVKDPRDVVKAGQVVKV 700
Query: 201 RLIEANAETGRISLTMRESDD 221
+++E + RI L+MR SD+
Sbjct: 701 KVMEVDEGRKRIGLSMRMSDE 721
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 15/111 (13%)
Query: 243 RSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLP 291
R KPG+ R E T F +G + LEGTV N+T GAF+ + ++G +
Sbjct: 617 RELEKPGRDPRPEFATASFKEGVEKISDLESGMVLEGTVTNVTNFGAFVDVGVHQDGLVH 676
Query: 292 TSEESDDGFANMMGGSSLQVGQEVSVRVLRISRG--QVTLTMKKEDDVGSN 340
S +D + ++ GQ V V+V+ + G ++ L+M+ D+ GS+
Sbjct: 677 ISALADKFVKDPR--DVVKAGQVVKVKVMEVDEGRKRIGLSMRMSDEPGSS 725
>gi|418530896|ref|ZP_13096816.1| RNA-binding S1 domain-containing protein [Comamonas testosteroni
ATCC 11996]
gi|371451975|gb|EHN65007.1| RNA-binding S1 domain-containing protein [Comamonas testosteroni
ATCC 11996]
Length = 793
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 50/75 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL G T G V ++ FGAF+D G DGLVHVS++S F++D +V GQ VKV++
Sbjct: 659 KDLKEGMTLEGTVSNVAQFGAFVDLGVHQDGLVHVSQMSHKFIEDAREVVKTGQIVKVKV 718
Query: 203 IEANAETGRISLTMR 217
+E + + RISLTM+
Sbjct: 719 LEVDVDRKRISLTMK 733
Score = 39.7 bits (91), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLR- 321
G LEGTV N+ + GAF+ L ++G + S+ S + ++ GQ V V+VL
Sbjct: 664 GMTLEGTVSNVAQFGAFVDLGVHQDGLVHVSQMSHKFIEDAR--EVVKTGQIVKVKVLEV 721
Query: 322 -ISRGQVTLTMK 332
+ R +++LTMK
Sbjct: 722 DVDRKRISLTMK 733
>gi|196250541|ref|ZP_03149231.1| RNA binding S1 domain protein [Geobacillus sp. G11MC16]
gi|196209890|gb|EDY04659.1| RNA binding S1 domain protein [Geobacillus sp. G11MC16]
Length = 239
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 49/77 (63%)
Query: 140 VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
+K EDL PG G VR++ FGAF+D G DGLVH+S+LS +V+ IVSVG VK
Sbjct: 158 LKMEDLKPGMELEGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQYVRHPLDIVSVGDVVK 217
Query: 200 VRLIEANAETGRISLTM 216
V + + GRISL+M
Sbjct: 218 VWVEHVDVAKGRISLSM 234
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 49/93 (52%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP ++D +K G +LEGTV+N+ GAF+ + ++G + S+ S
Sbjct: 142 RDPRDELPKPLLRKDVLKMEDLKPGMELEGTVRNVVDFGAFVDIGVKQDGLVHISKLSKQ 201
Query: 299 GFANMMGGSSLQVGQEVSVRVLRISRGQVTLTM 331
+ + S+ +V V + +++G+++L+M
Sbjct: 202 YVRHPLDIVSVGDVVKVWVEHVDVAKGRISLSM 234
>gi|350529931|ref|ZP_08908872.1| transcriptional accessory protein [Vibrio rotiferianus DAT722]
Length = 772
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 50/78 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L+D FV D +V G VKV+++
Sbjct: 647 DLEPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAGDIVKVKVM 706
Query: 204 EANAETGRISLTMRESDD 221
E + + RI+L+MR +D+
Sbjct: 707 EVDVQRKRIALSMRLNDE 724
>gi|297521212|ref|ZP_06939598.1| putative transcriptional accessory protein [Escherichia coli OP50]
Length = 436
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 310 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 369
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 370 EVDLQRKRIALTMR 383
>gi|261344527|ref|ZP_05972171.1| protein YhgF [Providencia rustigianii DSM 4541]
gi|282567440|gb|EFB72975.1| protein YhgF [Providencia rustigianii DSM 4541]
Length = 776
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DLIPG G V ++ FGAF+D G DGLVH+S LS+++V+D +V G VKV+++
Sbjct: 646 DLIPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNSYVEDPHKVVKAGDIVKVKVL 705
Query: 204 EANAETGRISLTMR 217
+ + RI+LTMR
Sbjct: 706 DVDIPRKRIALTMR 719
Score = 39.3 bits (90), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 15/105 (14%)
Query: 247 KPGQK-RDEMKTTKF----------VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT F + G LEG V N+T GAF+ + ++G + S
Sbjct: 623 KPGRDPRPEFKTATFADGVETMNDLIPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSL 682
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVL--RISRGQVTLTMKKEDDVG 338
S+ + ++ G V V+VL I R ++ LTM+ ++ G
Sbjct: 683 SNSYVED--PHKVVKAGDIVKVKVLDVDIPRKRIALTMRLDEQAG 725
>gi|94501660|ref|ZP_01308176.1| S1 RNA binding domain protein [Oceanobacter sp. RED65]
gi|94426236|gb|EAT11228.1| S1 RNA binding domain protein [Oceanobacter sp. RED65]
Length = 776
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL G V ++ FGAF+D G DGLVH+S +SD F+ D +V G VKV++
Sbjct: 645 KDLKDDMILEGVVSNVAAFGAFVDVGVHQDGLVHISMMSDQFIDDPRQVVKAGDVVKVKV 704
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTT--RRSTSK 247
+E + RI+L+MR SD+ + Q +K S K + + RRS+SK
Sbjct: 705 MEVDVPRKRIALSMRMSDNAADYQAEKSTPRSERKPKNSAPRRSSSK 751
>gi|359455826|ref|ZP_09245032.1| protein yhgF [Pseudoalteromonas sp. BSi20495]
gi|358047130|dbj|GAA81281.1| protein yhgF [Pseudoalteromonas sp. BSi20495]
Length = 768
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 50/82 (60%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAF+D G DGLVH+S +++ F+ D +V G VKV
Sbjct: 642 KISDLKPGMILEGVVSNVANFGAFVDVGVHQDGLVHISAITNKFISDPREVVKAGDIVKV 701
Query: 201 RLIEANAETGRISLTMRESDDI 222
+++E +A RIS TMR D+I
Sbjct: 702 KVVEVDAARKRISFTMRLDDEI 723
>gi|419806694|ref|ZP_14331790.1| Tex-like protein [Escherichia coli AI27]
gi|384470285|gb|EIE54400.1| Tex-like protein [Escherichia coli AI27]
Length = 220
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 94 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 153
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 154 EVDLQRKRIALTMR 167
>gi|386706651|ref|YP_006170498.1| hypothetical protein P12B_c3508, partial [Escherichia coli P12b]
gi|383104819|gb|AFG42328.1| hypothetical protein P12B_c3508 [Escherichia coli P12b]
Length = 548
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 422 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 481
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 482 EVDLQRKRIALTMR 495
>gi|156740937|ref|YP_001431066.1| RNA-binding S1 domain-containing protein [Roseiflexus castenholzii
DSM 13941]
gi|156232265|gb|ABU57048.1| RNA binding S1 domain protein [Roseiflexus castenholzii DSM 13941]
Length = 388
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 100/214 (46%), Gaps = 35/214 (16%)
Query: 122 TLAESRRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS 181
L+E ++ RK++ + E L PG TG+V + FGAFID G DGL H+S LS
Sbjct: 188 VLSERSATQEWRKAQKQRLLTE-LQPGDILTGRVNQLTNFGAFIDLGG-ADGLAHISELS 245
Query: 182 DNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTT 241
V ++S GQEV+V ++E +AE RI L++R
Sbjct: 246 WQRVNHPREVLSPGQEVRVMVVEIDAERERIGLSLR------------------------ 281
Query: 242 RRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFA 301
R P D+ ++ GQ + G V N+ GAF+ + E EG + SE D A
Sbjct: 282 -RLQPNPWDTIDQ----RYSLGQLVSGPVTNVAPFGAFVQIEEAVEGLIHASELDADPQA 336
Query: 302 NMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKK 333
LQ GQ ++ R++ + R ++ L++++
Sbjct: 337 QPR--DLLQPGQIITARIISLDKQRQRMGLSLRR 368
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G +G V ++ PFGAF+ +GL+H S L + ++ GQ + R+I +
Sbjct: 298 GQLVSGPVTNVAPFGAFVQIEEAVEGLIHASELDADPQAQPRDLLQPGQIITARIISLDK 357
Query: 208 ETGRISLTMRES 219
+ R+ L++R +
Sbjct: 358 QRQRMGLSLRRN 369
>gi|164687095|ref|ZP_02211123.1| hypothetical protein CLOBAR_00721 [Clostridium bartlettii DSM
16795]
gi|164603980|gb|EDQ97445.1| Tex-like protein N-terminal domain protein [Clostridium bartlettii
DSM 16795]
Length = 724
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 56/94 (59%), Gaps = 6/94 (6%)
Query: 130 RTARKSEMPPV------KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDN 183
R R M P+ K ED+ G G VR++ FGAF+D G DGLVH S++S+
Sbjct: 630 RDPRDEGMKPILRTDVLKIEDIKEGMVLKGTVRNVVDFGAFVDIGIKNDGLVHKSQMSNK 689
Query: 184 FVKDVGSIVSVGQEVKVRLIEANAETGRISLTMR 217
FVKD IVSVG + V++I + + GR+SL+M+
Sbjct: 690 FVKDPMEIVSVGDVIDVKVIGIDLDKGRVSLSMK 723
Score = 42.4 bits (98), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP + D +K +G L+GTV+N+ GAF+ + +G + S+ S+
Sbjct: 630 RDPRDEGMKPILRTDVLKIEDIKEGMVLKGTVRNVVDFGAFVDIGIKNDGLVHKSQMSNK 689
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMK 332
+ M + VG + V+V+ I +G+V+L+MK
Sbjct: 690 FVKDPM--EIVSVGDVIDVKVIGIDLDKGRVSLSMK 723
>gi|307730620|ref|YP_003907844.1| 30S ribosomal protein S1 [Burkholderia sp. CCGE1003]
gi|307585155|gb|ADN58553.1| ribosomal protein S1 [Burkholderia sp. CCGE1003]
Length = 577
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 94/340 (27%), Positives = 152/340 (44%), Gaps = 58/340 (17%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E L GA G V++I +GAF+D G DGL+H++ ++ V+ ++SVGQEV ++
Sbjct: 202 ETLKEGAIVEGVVKNITDYGAFVDLGGI-DGLLHITDIAWRRVRHPSEVLSVGQEVTAKI 260
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
++ + E R+SL ++ Q D G +RR S
Sbjct: 261 LKFDQEKNRVSLGIK---------QLGDDPWEG----ISRRYPS---------------- 291
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G L G V N+T GAF+ + G EG + S E D N+ +Q+G EV V VL I
Sbjct: 292 GTRLFGKVTNITDYGAFVEVESGIEGLVHVS-EMDWTNKNVAPSKVVQLGDEVEVMVLEI 350
Query: 323 --SRGQVTLTMKK-----EDDVGSNLQ---LTQGVIHAATNPFV-LAFRSNKDISSFLDE 371
R +++L MK+ DD N + QG I + T+ V + D L +
Sbjct: 351 DEDRRRISLGMKQCKPNPWDDFSRNFKKGDKLQGAIKSITDFGVFIGLPGGIDGLVHLSD 410
Query: 372 RDKSATA------AKKSEKPTPIEIGGEVSQMEAGSSIPKVQDQPTSSDDGM---ASVPS 422
S T KK ++ I +G +V + I +++ P S+ M S+
Sbjct: 411 LSWSETGEEAVRKYKKGDEVEAIVLGIDVEKERISLGIKQLEGDPFSNFVAMNDKGSIVD 470
Query: 423 AVGETVEDHEAPSKEKGEL------ADIA-NRNDDPQNVM 455
V ++V+ A + GE+ ++IA +R +D +NV+
Sbjct: 471 GVVKSVDAKGAVVQLSGEVEGYLRASEIAQDRVEDARNVL 510
Score = 43.5 bits (101), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 82/198 (41%), Gaps = 48/198 (24%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS-----DNFVKDVGSIVSVGQEVKVRL 202
G G ++SI FG FI DGLVH+S LS + V+ G EV+ +
Sbjct: 379 GDKLQGAIKSITDFGVFIGLPGGIDGLVHLSDLSWSETGEEAVRKYKK----GDEVEAIV 434
Query: 203 IEANAETGRISLTMR--ESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKF 260
+ + E RISL ++ E D S D
Sbjct: 435 LGIDVEKERISLGIKQLEGDPFSNFVAMND------------------------------ 464
Query: 261 VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVL 320
KG ++G VK++ GA + L EG+L SE + D + + L+ G +V+ ++
Sbjct: 465 -KGSIVDGVVKSVDAKGAVVQLSGEVEGYLRASEIAQDRVEDAR--NVLKEGDKVNAMII 521
Query: 321 RI---SRGQVTLTMKKED 335
I SRG + L++K +D
Sbjct: 522 NIDRKSRG-INLSIKAKD 538
>gi|254362451|ref|ZP_04978560.1| possible RNA-binding protein [Mannheimia haemolytica PHL213]
gi|452745031|ref|ZP_21944869.1| transcriptional accessory protein [Mannheimia haemolytica serotype
6 str. H23]
gi|153094040|gb|EDN74956.1| possible RNA-binding protein [Mannheimia haemolytica PHL213]
gi|452086871|gb|EME03256.1| transcriptional accessory protein [Mannheimia haemolytica serotype
6 str. H23]
Length = 774
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 50/77 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL G G V ++ FGAF+D G DGLVH+S LS++FV+D ++V G VKV+++
Sbjct: 649 DLKAGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHTVVKAGDVVKVKVL 708
Query: 204 EANAETGRISLTMRESD 220
E +A RI+LTMR D
Sbjct: 709 EVDAARKRIALTMRLDD 725
Score = 40.0 bits (92), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 15/102 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT F+ G + LEGTV N+ GAF+ + ++G + S
Sbjct: 626 KPGRDPRGEFKTAVFMDGVEEITDLKAGMILEGTVTNVANFGAFVDIGVHQDGLVHISML 685
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKED 335
S+ + + ++ G V V+VL + +R ++ LTM+ +D
Sbjct: 686 SNSFVED--PHTVVKAGDVVKVKVLEVDAARKRIALTMRLDD 725
>gi|284822061|gb|ADB98031.1| conserved hypothetical protein [Escherichia coli]
Length = 316
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 190 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 249
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 250 EVDLQRKRIALTMR 263
>gi|418021097|ref|ZP_12660243.1| Transcriptional accessory protein [Candidatus Regiella insecticola
R5.15]
gi|347603537|gb|EGY28356.1| Transcriptional accessory protein [Candidatus Regiella insecticola
R5.15]
Length = 727
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 49/77 (63%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+ G T G V ++ FGAF+D G DGLVH+S L+D FV D IV G V+V+++
Sbjct: 651 DLLVGMTLEGTVTNVTNFGAFVDVGVHQDGLVHISSLADKFVDDPHKIVKTGDVVRVKVV 710
Query: 204 EANAETGRISLTMRESD 220
+ + RI+LTMR SD
Sbjct: 711 TIDLQRKRIALTMRLSD 727
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 15/102 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT F++G + LEGTV N+T GAF+ + ++G + S
Sbjct: 628 KPGRDPRPEFKTVTFIEGVETINDLLVGMTLEGTVTNVTNFGAFVDVGVHQDGLVHISSL 687
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKED 335
+D + ++ G V V+V+ I R ++ LTM+ D
Sbjct: 688 ADKFVDD--PHKIVKTGDVVRVKVVTIDLQRKRIALTMRLSD 727
>gi|386061377|ref|YP_005977899.1| putative transcriptional accessory protein [Pseudomonas aeruginosa
M18]
gi|347307683|gb|AEO77797.1| putative transcriptional accessory protein [Pseudomonas aeruginosa
M18]
Length = 913
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 100/209 (47%), Gaps = 28/209 (13%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S LS+ FVKD +V G VKV++
Sbjct: 650 KDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKV 709
Query: 203 IEANAETGRISLTMRESDDIS-KLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFV 261
+E + R+ L+MR SD K++ Q+ +G + +P Q+R T+
Sbjct: 710 MEVDIPRNRVGLSMRMSDTPGEKVEGQRGGRPTG---------SGQPRQERGAPARTERA 760
Query: 262 KGQDLEG-TVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVL 320
G+ G V+ + ++ P E +P E+ ++ ++G + +G V+
Sbjct: 761 AGEQRHGRAVRQRQATEEEVTEPSMSE--MPAREQMISAYSELVGLDPVSLGDGVA---- 814
Query: 321 RISRGQVTLTMKKEDDVGSNLQLTQGVIH 349
+V L M ++L+ GV+H
Sbjct: 815 -----EVRLPM------AAHLRNRGGVMH 832
>gi|311739725|ref|ZP_07713560.1| transcriptional accessory protein [Corynebacterium pseudogenitalium
ATCC 33035]
gi|311305541|gb|EFQ81609.1| transcriptional accessory protein [Corynebacterium pseudogenitalium
ATCC 33035]
Length = 777
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 49/81 (60%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAF+D G DGLVHVS +S FV D +V GQ VKV
Sbjct: 633 KVSDLTPGMILEGTVTNVAAFGAFVDVGVHQDGLVHVSAMSHKFVSDPHEVVRSGQVVKV 692
Query: 201 RLIEANAETGRISLTMRESDD 221
+++E + E RI L++R D+
Sbjct: 693 KVMEVDVERQRIGLSLRLDDE 713
>gi|229916479|ref|YP_002885125.1| RNA binding S1 domain-containing protein [Exiguobacterium sp. AT1b]
gi|229467908|gb|ACQ69680.1| RNA binding S1 domain protein [Exiguobacterium sp. AT1b]
Length = 130
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 72/123 (58%), Gaps = 6/123 (4%)
Query: 150 TFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAET 209
TGKV IQPFGAF+ T GLVH+S +S ++VKDV V VGQEV+V+++E + +
Sbjct: 9 VLTGKVTGIQPFGAFVALDDETQGLVHISEISHDYVKDVNDYVQVGQEVEVKILEVDEAS 68
Query: 210 GRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGT 269
+I L+M+ + + K ++K A + R RR+ + K++E +K + LE
Sbjct: 69 KKIKLSMKATQEAPK--REKSAKPAR---RAPRRNEAASNFKQEEAPGFTVLKDK-LEDW 122
Query: 270 VKN 272
+KN
Sbjct: 123 IKN 125
Score = 42.7 bits (99), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 259 KFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVR 318
K+ K Q L G V + GAF++L + +G + SE S D ++ +QVGQEV V+
Sbjct: 3 KYEKDQVLTGKVTGIQPFGAFVALDDETQGLVHISEISHDYVKDV--NDYVQVGQEVEVK 60
Query: 319 VLRISRG--QVTLTMK 332
+L + ++ L+MK
Sbjct: 61 ILEVDEASKKIKLSMK 76
>gi|145594251|ref|YP_001158548.1| RNA-binding S1 domain-containing protein [Salinispora tropica
CNB-440]
gi|145303588|gb|ABP54170.1| RNA binding S1 domain protein [Salinispora tropica CNB-440]
Length = 803
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 48/77 (62%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVHVS +S FV+D +V G VKVR++
Sbjct: 649 DLVPGLILEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSRTFVRDPHEVVKSGDVVKVRVL 708
Query: 204 EANAETGRISLTMRESD 220
+ + RISLT+R D
Sbjct: 709 DVDVPRKRISLTLRLDD 725
>gi|417521118|ref|ZP_12182887.1| Transcription accessory protein (S1 RNA-binding domain), partial
[Salmonella enterica subsp. enterica serovar Uganda str.
R8-3404]
gi|353642247|gb|EHC86752.1| Transcription accessory protein (S1 RNA-binding domain), partial
[Salmonella enterica subsp. enterica serovar Uganda str.
R8-3404]
Length = 409
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS FV D ++V G VKV+++
Sbjct: 318 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVL 377
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 378 EVDLQRKRIALTMR 391
>gi|261494117|ref|ZP_05990620.1| putative RNA-binding protein [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|261496042|ref|ZP_05992452.1| putative RNA-binding protein [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261308292|gb|EEY09585.1| putative RNA-binding protein [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261310283|gb|EEY11483.1| putative RNA-binding protein [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 774
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 50/77 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL G G V ++ FGAF+D G DGLVH+S LS++FV+D ++V G VKV+++
Sbjct: 649 DLKAGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEDPHTVVKAGDVVKVKVL 708
Query: 204 EANAETGRISLTMRESD 220
E +A RI+LTMR D
Sbjct: 709 EVDAARKRIALTMRLDD 725
Score = 40.0 bits (92), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 15/102 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT F+ G + LEGTV N+ GAF+ + ++G + S
Sbjct: 626 KPGRDPRGEFKTAVFMDGVEEITDLKAGMILEGTVTNVANFGAFVDIGVHQDGLVHISML 685
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKED 335
S+ + + ++ G V V+VL + +R ++ LTM+ +D
Sbjct: 686 SNSFVED--PHTVVKAGDVVKVKVLEVDAARKRIALTMRLDD 725
>gi|289804102|ref|ZP_06534731.1| putative transcriptional accessory protein [Salmonella enterica
subsp. enterica serovar Typhi str. AG3]
Length = 348
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS FV D ++V G VKV+++
Sbjct: 216 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVL 275
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 276 EVDLQRKRIALTMR 289
>gi|443474350|ref|ZP_21064328.1| Tex-like protein [Pseudanabaena biceps PCC 7429]
gi|443020947|gb|ELS34851.1| Tex-like protein [Pseudanabaena biceps PCC 7429]
Length = 714
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 48/77 (62%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL G G + ++ FGAF+D G DGLVH+S+L+D FV D IV VGQ VKV
Sbjct: 637 KISDLQVGMEIEGIITNVANFGAFVDIGVHQDGLVHISQLADRFVSDPKQIVKVGQVVKV 696
Query: 201 RLIEANAETGRISLTMR 217
R++E N RI L+M+
Sbjct: 697 RVLEVNESLKRIGLSMK 713
Score = 40.0 bits (92), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 16/120 (13%)
Query: 227 QQKDATASGD-KVRTTRRSTSKPGQK-RDEMKTTKFVK----------GQDLEGTVKNLT 274
QQ A G+ +R R KPG+ R E K F G ++EG + N+
Sbjct: 596 QQYVTDAIGEPTLRDILRELEKPGRDPRAEFKYATFSDAIQKISDLQVGMEIEGIITNVA 655
Query: 275 RSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMK 332
GAF+ + ++G + S+ +D ++ ++VGQ V VRVL + S ++ L+MK
Sbjct: 656 NFGAFVDIGVHQDGLVHISQLADRFVSD--PKQIVKVGQVVKVRVLEVNESLKRIGLSMK 713
>gi|21231593|ref|NP_637510.1| transcription-like protein [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|21113282|gb|AAM41434.1| transcription-related protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
Length = 787
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 47/76 (61%)
Query: 145 LIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIE 204
L PG G V ++ FGAF+D G DGLVH+S LSD FVKD +V G VKV+++E
Sbjct: 652 LKPGMILEGVVSNVAAFGAFVDIGVHQDGLVHISALSDTFVKDPRDVVKAGDIVKVKVLE 711
Query: 205 ANAETGRISLTMRESD 220
+ RI+LT R SD
Sbjct: 712 VDVARKRIALTRRLSD 727
>gi|373458039|ref|ZP_09549806.1| Tex-like protein [Caldithrix abyssi DSM 13497]
gi|371719703|gb|EHO41474.1| Tex-like protein [Caldithrix abyssi DSM 13497]
Length = 722
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 51/77 (66%)
Query: 140 VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
+K EDL G G VR++ FGAF+D G DGLVHVSR++ FVK+ ++SVG ++
Sbjct: 642 LKMEDLREGMILKGTVRNVVDFGAFVDIGVKQDGLVHVSRMAKKFVKNPYELLSVGDVIE 701
Query: 200 VRLIEANAETGRISLTM 216
V+++ + E GRI L+M
Sbjct: 702 VKVVSIDLERGRIGLSM 718
Score = 40.0 bits (92), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 242 RRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFA 301
R KP K D +K +G L+GTV+N+ GAF+ + ++G + S +
Sbjct: 629 RDELPKPIFKSDVLKMEDLREGMILKGTVRNVVDFGAFVDIGVKQDGLVHVSRMAKKFVK 688
Query: 302 NMMGGSSLQVGQEVSVRVLRI--SRGQVTLTM 331
N L VG + V+V+ I RG++ L+M
Sbjct: 689 NPY--ELLSVGDVIEVKVVSIDLERGRIGLSM 718
>gi|270264442|ref|ZP_06192708.1| hypothetical protein SOD_h01090 [Serratia odorifera 4Rx13]
gi|270041578|gb|EFA14676.1| hypothetical protein SOD_h01090 [Serratia odorifera 4Rx13]
Length = 774
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L+D FV+D ++V G VKV+++
Sbjct: 646 DLQPGMVLEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAGDIVKVKVM 705
Query: 204 EANAETGRISLTMR 217
E + + RI+L+MR
Sbjct: 706 EVDLQRKRIALSMR 719
>gi|188991422|ref|YP_001903432.1| RNA-binding protein [Xanthomonas campestris pv. campestris str.
B100]
gi|167733182|emb|CAP51380.1| Putative RNA-binding protein [Xanthomonas campestris pv.
campestris]
Length = 787
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 47/76 (61%)
Query: 145 LIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIE 204
L PG G V ++ FGAF+D G DGLVH+S LSD FVKD +V G VKV+++E
Sbjct: 652 LKPGMILEGVVSNVAAFGAFVDIGVHQDGLVHISALSDTFVKDPRDVVKAGDIVKVKVLE 711
Query: 205 ANAETGRISLTMRESD 220
+ RI+LT R SD
Sbjct: 712 VDVARKRIALTRRLSD 727
>gi|229028095|ref|ZP_04184244.1| Tex protein-related transcription accessory protein (S1 RNA binding
domain) [Bacillus cereus AH1271]
gi|228733217|gb|EEL84050.1| Tex protein-related transcription accessory protein (S1 RNA binding
domain) [Bacillus cereus AH1271]
Length = 656
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 71/135 (52%), Gaps = 14/135 (10%)
Query: 96 DSAGASDIPSDVETSESSSIKSE---ASPTLAESRRSRTA----RKSEMPP-------VK 141
D G S + +E E S + E PTL + + + + E+P +K
Sbjct: 518 DDVGQSQLQKSLEEVEISKLSEETGVGEPTLVDIIDALISPERDMRDELPKPLLKKGILK 577
Query: 142 NEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVR 201
EDL G G VR++ FGAF+D G DGLVH+S+LS +VK IVSVGQ VKV
Sbjct: 578 LEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDIVSVGQIVKVW 637
Query: 202 LIEANAETGRISLTM 216
+ + + + GR++L+M
Sbjct: 638 VDDIDTKKGRVALSM 652
Score = 43.1 bits (100), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP K+ +K +G +LEGTV+N+ GAF+ + ++G + S+ S
Sbjct: 560 RDMRDELPKPLLKKGILKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQ 619
Query: 299 GFANMMGGSSLQVGQEVSVRV--LRISRGQVTLTM 331
+ + S VGQ V V V + +G+V L+M
Sbjct: 620 YVKHPLDIVS--VGQIVKVWVDDIDTKKGRVALSM 652
>gi|197286718|ref|YP_002152590.1| transcription accessory protein [Proteus mirabilis HI4320]
gi|425071006|ref|ZP_18474112.1| protein yhgF [Proteus mirabilis WGLW4]
gi|194684205|emb|CAR45692.1| putative transcription accessory protein [Proteus mirabilis HI4320]
gi|404599831|gb|EKB00284.1| protein yhgF [Proteus mirabilis WGLW4]
Length = 777
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+ G G V ++ FGAF+D G DGLVH+S LSD FV+D ++V G VKV+++
Sbjct: 646 DLVSGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHTVVKTGDIVKVKVL 705
Query: 204 EANAETGRISLTMR 217
E + RI+LTMR
Sbjct: 706 EVDLPRKRIALTMR 719
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 15/103 (14%)
Query: 243 RSTSKPGQK-RDEMKTTKF----------VKGQDLEGTVKNLTRSGAFISLPEGEEGFLP 291
+ +KPG+ R E KT F V G LEGTV N+T GAF+ + ++G +
Sbjct: 619 KELAKPGRDPRPEFKTATFAEGVETMNDLVSGMILEGTVTNVTNFGAFVDIGVHQDGLVH 678
Query: 292 TSEESDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMK 332
S SD + + ++ G V V+VL + R ++ LTM+
Sbjct: 679 ISSLSDRFVED--PHTVVKTGDIVKVKVLEVDLPRKRIALTMR 719
>gi|269959402|ref|ZP_06173785.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269835839|gb|EEZ89915.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 773
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 49/78 (62%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L+D FV D +V G VKV+++
Sbjct: 647 DLEPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAGDIVKVKVM 706
Query: 204 EANAETGRISLTMRESDD 221
E + + RI L+MR +D+
Sbjct: 707 EVDVQRKRIGLSMRMNDE 724
>gi|66768285|ref|YP_243047.1| transcription-like protein [Xanthomonas campestris pv. campestris
str. 8004]
gi|66573617|gb|AAY49027.1| transcription-related protein [Xanthomonas campestris pv.
campestris str. 8004]
Length = 787
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 47/76 (61%)
Query: 145 LIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIE 204
L PG G V ++ FGAF+D G DGLVH+S LSD FVKD +V G VKV+++E
Sbjct: 652 LKPGMILEGVVSNVAAFGAFVDIGVHQDGLVHISALSDTFVKDPRDVVKAGDIVKVKVLE 711
Query: 205 ANAETGRISLTMRESD 220
+ RI+LT R SD
Sbjct: 712 VDVARKRIALTRRLSD 727
>gi|227355092|ref|ZP_03839503.1| transcription accessory protein [Proteus mirabilis ATCC 29906]
gi|227164879|gb|EEI49726.1| transcription accessory protein [Proteus mirabilis ATCC 29906]
Length = 777
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+ G G V ++ FGAF+D G DGLVH+S LSD FV+D ++V G VKV+++
Sbjct: 646 DLVSGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHTVVKTGDIVKVKVL 705
Query: 204 EANAETGRISLTMR 217
E + RI+LTMR
Sbjct: 706 EVDLPRKRIALTMR 719
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 15/103 (14%)
Query: 243 RSTSKPGQK-RDEMKTTKF----------VKGQDLEGTVKNLTRSGAFISLPEGEEGFLP 291
+ +KPG+ R E KT F V G LEGTV N+T GAF+ + ++G +
Sbjct: 619 KELAKPGRDPRPEFKTATFAEGVETMNDLVSGMILEGTVTNVTNFGAFVDIGVHQDGLVH 678
Query: 292 TSEESDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMK 332
S SD + + ++ G V V+VL + R ++ LTM+
Sbjct: 679 ISSLSDKFVED--PHTVVKTGDIVKVKVLEVDLPRKRIALTMR 719
>gi|433459808|ref|ZP_20417510.1| protein Tex, partial [Arthrobacter crystallopoietes BAB-32]
gi|432187441|gb|ELK44729.1| protein Tex, partial [Arthrobacter crystallopoietes BAB-32]
Length = 147
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 51/81 (62%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAF+D G DGLVH+S +S FV + +V GQ VKV
Sbjct: 64 KISDLKPGMILEGTVTNVAAFGAFVDVGVHQDGLVHISAMSTKFVSNPHEVVKSGQVVKV 123
Query: 201 RLIEANAETGRISLTMRESDD 221
+++EA+ + RISLT+R DD
Sbjct: 124 KVLEADPDRKRISLTLRLDDD 144
>gi|420140454|ref|ZP_14648214.1| hypothetical protein PACIG1_3737 [Pseudomonas aeruginosa CIG1]
gi|421161488|ref|ZP_15620440.1| hypothetical protein PABE173_4020 [Pseudomonas aeruginosa ATCC
25324]
gi|403246786|gb|EJY60482.1| hypothetical protein PACIG1_3737 [Pseudomonas aeruginosa CIG1]
gi|404539861|gb|EKA49306.1| hypothetical protein PABE173_4020 [Pseudomonas aeruginosa ATCC
25324]
Length = 779
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 49/78 (62%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S LS+ FVKD +V G VKV++
Sbjct: 650 KDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKV 709
Query: 203 IEANAETGRISLTMRESD 220
+E + R+ L+MR SD
Sbjct: 710 MEVDIPRNRVGLSMRMSD 727
>gi|315503018|ref|YP_004081905.1| tex-like protein [Micromonospora sp. L5]
gi|315409637|gb|ADU07754.1| Tex-like protein protein-like protein [Micromonospora sp. L5]
Length = 827
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 49/81 (60%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAF+D G DGLVHVS +S FVKD +V G VKV
Sbjct: 660 KISDLTPGMVLEGVVTNVAAFGAFVDVGVHQDGLVHVSAMSHTFVKDPRDVVKSGDVVKV 719
Query: 201 RLIEANAETGRISLTMRESDD 221
R+++ + RISLT+R D+
Sbjct: 720 RVLDVDVPRKRISLTLRLDDE 740
>gi|218894303|ref|YP_002443173.1| putative transcriptional accessory protein [Pseudomonas aeruginosa
LESB58]
gi|218774532|emb|CAW30349.1| putative transcriptional accessory protein [Pseudomonas aeruginosa
LESB58]
Length = 779
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 49/78 (62%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S LS+ FVKD +V G VKV++
Sbjct: 650 KDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKV 709
Query: 203 IEANAETGRISLTMRESD 220
+E + R+ L+MR SD
Sbjct: 710 MEVDIPRNRVGLSMRMSD 727
>gi|254238102|ref|ZP_04931425.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|392986881|ref|YP_006485468.1| hypothetical protein PADK2_27525 [Pseudomonas aeruginosa DK2]
gi|419756265|ref|ZP_14282616.1| hypothetical protein CF510_25014 [Pseudomonas aeruginosa
PADK2_CF510]
gi|126170033|gb|EAZ55544.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|384397350|gb|EIE43762.1| hypothetical protein CF510_25014 [Pseudomonas aeruginosa
PADK2_CF510]
gi|392322386|gb|AFM67766.1| hypothetical protein PADK2_27525 [Pseudomonas aeruginosa DK2]
Length = 779
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 49/78 (62%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S LS+ FVKD +V G VKV++
Sbjct: 650 KDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKV 709
Query: 203 IEANAETGRISLTMRESD 220
+E + R+ L+MR SD
Sbjct: 710 MEVDIPRNRVGLSMRMSD 727
>gi|429102159|ref|ZP_19164133.1| Transcription accessory protein (S1 RNA-binding domain)
[Cronobacter turicensis 564]
gi|426288808|emb|CCJ90246.1| Transcription accessory protein (S1 RNA-binding domain)
[Cronobacter turicensis 564]
Length = 177
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LSD FV+D ++V G VKV+++
Sbjct: 48 DLQPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHTVVKAGDIVKVKVL 107
Query: 204 EANAETGRISLTMR 217
E + RI+LTMR
Sbjct: 108 EVDLPRKRIALTMR 121
>gi|425069550|ref|ZP_18472665.1| protein yhgF [Proteus mirabilis WGLW6]
gi|404596976|gb|EKA97483.1| protein yhgF [Proteus mirabilis WGLW6]
Length = 777
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+ G G V ++ FGAF+D G DGLVH+S LSD FV+D ++V G VKV+++
Sbjct: 646 DLVSGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHTVVKTGDIVKVKVL 705
Query: 204 EANAETGRISLTMR 217
E + RI+LTMR
Sbjct: 706 EVDLPRKRIALTMR 719
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 15/103 (14%)
Query: 243 RSTSKPGQK-RDEMKTTKF----------VKGQDLEGTVKNLTRSGAFISLPEGEEGFLP 291
+ +KPG+ R E KT F V G LEGTV N+T GAF+ + ++G +
Sbjct: 619 KELAKPGRDPRPEFKTATFAEGVETMNDLVSGMILEGTVTNVTNFGAFVDIGVHQDGLVH 678
Query: 292 TSEESDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMK 332
S SD + + ++ G V V+VL + R ++ LTM+
Sbjct: 679 ISSLSDRFVED--PHTVVKTGDIVKVKVLEVDLPRKRIALTMR 719
>gi|388602816|ref|ZP_10161212.1| transcriptional accessory protein [Vibrio campbellii DS40M4]
Length = 773
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 49/78 (62%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L+D FV D +V G VKV+++
Sbjct: 647 DLEPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAGDIVKVKVM 706
Query: 204 EANAETGRISLTMRESDD 221
E + + RI L+MR +D+
Sbjct: 707 EVDVQRKRIGLSMRMNDE 724
>gi|299144362|ref|ZP_07037442.1| ribosomal protein S1 [Peptoniphilus sp. oral taxon 386 str. F0131]
gi|298518847|gb|EFI42586.1| ribosomal protein S1 [Peptoniphilus sp. oral taxon 386 str. F0131]
Length = 680
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 93/192 (48%), Gaps = 34/192 (17%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E L G G V+ + FGAFID G DGL+H+S LS N VK +V+ GQ+V+V++
Sbjct: 464 ESLQEGDVIEGTVQRLTNFGAFIDLGG-VDGLIHISELSWNRVKHPADVVAPGQKVEVQV 522
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
+ + E RI+L ++++ T KP D +T V
Sbjct: 523 LTVDEEKNRIALGLKQT-------------------------TKKPW---DIFVSTTQV- 553
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G +EG V NL GAFI L G +G L S+ S + L +G+EV+V++ I
Sbjct: 554 GDVVEGKVVNLLEFGAFIRLESGVDGLLHVSQISKEHVEK--PADKLTMGEEVTVKITDI 611
Query: 323 S--RGQVTLTMK 332
+++L+MK
Sbjct: 612 DEENKKISLSMK 623
>gi|145300942|ref|YP_001143783.1| hypothetical protein ASA_4094 [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142853714|gb|ABO92035.1| Protein yhgF [Aeromonas salmonicida subsp. salmonicida A449]
Length = 768
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 48/77 (62%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL P G V ++ FGAF+D G DGLVH+S L+D FVKD +V G V+V
Sbjct: 642 KISDLAPEMILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDRFVKDPREVVKAGDIVRV 701
Query: 201 RLIEANAETGRISLTMR 217
+++E +A RISLTMR
Sbjct: 702 KVLEVDAPRKRISLTMR 718
>gi|15600394|ref|NP_253888.1| hypothetical protein PA5201 [Pseudomonas aeruginosa PAO1]
gi|416856490|ref|ZP_11912086.1| hypothetical protein PA13_09539 [Pseudomonas aeruginosa 138244]
gi|418586602|ref|ZP_13150643.1| hypothetical protein O1O_18014 [Pseudomonas aeruginosa MPAO1/P1]
gi|418589936|ref|ZP_13153854.1| hypothetical protein O1Q_05050 [Pseudomonas aeruginosa MPAO1/P2]
gi|421183288|ref|ZP_15640750.1| hypothetical protein PAE2_5237 [Pseudomonas aeruginosa E2]
gi|421519770|ref|ZP_15966441.1| hypothetical protein A161_25990 [Pseudomonas aeruginosa PAO579]
gi|424943998|ref|ZP_18359761.1| putative transcriptional accessory protein [Pseudomonas aeruginosa
NCMG1179]
gi|9951507|gb|AAG08586.1|AE004933_2 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
gi|334841907|gb|EGM20526.1| hypothetical protein PA13_09539 [Pseudomonas aeruginosa 138244]
gi|346060444|dbj|GAA20327.1| putative transcriptional accessory protein [Pseudomonas aeruginosa
NCMG1179]
gi|375042967|gb|EHS35603.1| hypothetical protein O1O_18014 [Pseudomonas aeruginosa MPAO1/P1]
gi|375051274|gb|EHS43744.1| hypothetical protein O1Q_05050 [Pseudomonas aeruginosa MPAO1/P2]
gi|404345689|gb|EJZ72041.1| hypothetical protein A161_25990 [Pseudomonas aeruginosa PAO579]
gi|404540524|gb|EKA49927.1| hypothetical protein PAE2_5237 [Pseudomonas aeruginosa E2]
gi|453046714|gb|EME94430.1| hypothetical protein H123_10592 [Pseudomonas aeruginosa PA21_ST175]
Length = 779
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 49/78 (62%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S LS+ FVKD +V G VKV++
Sbjct: 650 KDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKV 709
Query: 203 IEANAETGRISLTMRESD 220
+E + R+ L+MR SD
Sbjct: 710 MEVDIPRNRVGLSMRMSD 727
>gi|421785993|ref|ZP_16222412.1| putative transcriptional accessory protein [Serratia plymuthica
A30]
gi|407751837|gb|EKF62001.1| putative transcriptional accessory protein [Serratia plymuthica
A30]
Length = 774
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L+D FV+D ++V G VKV+++
Sbjct: 646 DLQPGMVLEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAGDIVKVKVM 705
Query: 204 EANAETGRISLTMR 217
E + + RI+L+MR
Sbjct: 706 EVDLQRKRIALSMR 719
>gi|421156734|ref|ZP_15616173.1| hypothetical protein PABE171_5558 [Pseudomonas aeruginosa ATCC
14886]
gi|404518666|gb|EKA29484.1| hypothetical protein PABE171_5558 [Pseudomonas aeruginosa ATCC
14886]
Length = 779
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 49/78 (62%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S LS+ FVKD +V G VKV++
Sbjct: 650 KDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKV 709
Query: 203 IEANAETGRISLTMRESD 220
+E + R+ L+MR SD
Sbjct: 710 MEVDIPRNRVGLSMRMSD 727
>gi|357402665|ref|YP_004914590.1| transcriptional accessory protein [Streptomyces cattleya NRRL 8057
= DSM 46488]
gi|386358742|ref|YP_006056988.1| transcription accessory protein [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|337769074|emb|CCB77787.1| transcriptional accessory protein [Streptomyces cattleya NRRL 8057
= DSM 46488]
gi|365809250|gb|AEW97466.1| transcription accessory protein [Streptomyces cattleya NRRL 8057 =
DSM 46488]
Length = 795
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 50/80 (62%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVHVS +S +FVKD +V G V+V++
Sbjct: 655 KDLTPGMLLEGTVTNVAAFGAFVDVGVHQDGLVHVSAMSKSFVKDPRDVVKPGDVVRVKV 714
Query: 203 IEANAETGRISLTMRESDDI 222
+E + RI LT+R DD+
Sbjct: 715 LEVDIARKRIGLTLRLDDDV 734
>gi|122921517|pdb|2OCE|A Chain A, Crystal Structure Of Tex Family Protein Pa5201 From
Pseudomonas Aeruginosa
Length = 780
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 49/78 (62%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S LS+ FVKD +V G VKV++
Sbjct: 651 KDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKV 710
Query: 203 IEANAETGRISLTMRESD 220
+E + R+ L+MR SD
Sbjct: 711 MEVDIPRNRVGLSMRMSD 728
>gi|420186281|ref|ZP_14692352.1| S1 RNA binding domain protein [Staphylococcus epidermidis NIHLM040]
gi|394252498|gb|EJD97530.1| S1 RNA binding domain protein [Staphylococcus epidermidis NIHLM040]
Length = 716
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 75/143 (52%), Gaps = 11/143 (7%)
Query: 85 VEESDSPAADDDSAGASDIPSDVETSESSSIKSEASPTLAESRRSRTA------RKSEMP 138
+ + D A D S + S+V S S + PTL + +S A + E P
Sbjct: 569 LHQLDLTAQDIGSVKLKNTLSNVNISTLVSQLNIGEPTLKDIIQSLIAPNRDPRDEFETP 628
Query: 139 PVKN-----EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVS 193
+K+ EDL G G VR++ FGAF+D G DGLVH+S+LS FVK+ I+S
Sbjct: 629 ILKSDVLSIEDLSKGMKLNGTVRNVVDFGAFVDIGVKQDGLVHISKLSKKFVKNPMDIIS 688
Query: 194 VGQEVKVRLIEANAETGRISLTM 216
VG V+V +++ + G++SLTM
Sbjct: 689 VGDIVEVWILDIDENKGKVSLTM 711
Score = 43.9 bits (102), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R P K D + KG L GTV+N+ GAF+ + ++G + S+ S
Sbjct: 619 RDPRDEFETPILKSDVLSIEDLSKGMKLNGTVRNVVDFGAFVDIGVKQDGLVHISKLSKK 678
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTM 331
N M + VG V V +L I ++G+V+LTM
Sbjct: 679 FVKNPM--DIISVGDIVEVWILDIDENKGKVSLTM 711
>gi|296392058|ref|ZP_06881533.1| putative transcriptional accessory protein [Pseudomonas aeruginosa
PAb1]
Length = 779
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 49/78 (62%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S LS+ FVKD +V G VKV++
Sbjct: 650 KDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKV 709
Query: 203 IEANAETGRISLTMRESD 220
+E + R+ L+MR SD
Sbjct: 710 MEVDIPRNRVGLSMRMSD 727
>gi|242371560|ref|ZP_04817134.1| S1 domain RNA-binding protein [Staphylococcus epidermidis
M23864:W1]
gi|242350712|gb|EES42313.1| S1 domain RNA-binding protein [Staphylococcus epidermidis
M23864:W1]
Length = 716
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 49/74 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL G +G VR++ FGAF+D G DGLVHVS+LS FVK+ IVSVG V V +
Sbjct: 638 EDLHQGMKLSGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMEIVSVGDIVDVWI 697
Query: 203 IEANAETGRISLTM 216
++ + G++SLTM
Sbjct: 698 LDIDENKGKVSLTM 711
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R P K D + +G L GTV+N+ GAF+ + ++G + S+ S
Sbjct: 619 RDPRDEFETPILKSDVLSIEDLHQGMKLSGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKK 678
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTM 331
N M + VG V V +L I ++G+V+LTM
Sbjct: 679 FVKNPM--EIVSVGDIVDVWILDIDENKGKVSLTM 711
>gi|169826215|ref|YP_001696373.1| general stress protein 13 (GSP13) [Lysinibacillus sphaericus C3-41]
gi|168990703|gb|ACA38243.1| General stress protein 13 (GSP13) [Lysinibacillus sphaericus C3-41]
Length = 125
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 48/70 (68%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G TGKV IQP+GAF+ T GLVH+S ++ FVKDV ++VGQEV V+++E +
Sbjct: 8 GDVLTGKVTGIQPYGAFVALDDNTQGLVHISEITYGFVKDVSEFLAVGQEVAVKILEIDE 67
Query: 208 ETGRISLTMR 217
E +ISL+MR
Sbjct: 68 EAEKISLSMR 77
>gi|452947389|gb|EME52877.1| transcriptional accessory protein [Amycolatopsis decaplanina DSM
44594]
Length = 793
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 48/78 (61%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAFID G DGL HVS LS NFVKD +V G VKV+++
Sbjct: 653 DLKPGMRLEGVVTNVAAFGAFIDVGVHQDGLAHVSALSKNFVKDPREVVKPGDIVKVKVL 712
Query: 204 EANAETGRISLTMRESDD 221
E + RISLT+R D+
Sbjct: 713 EVDVPRKRISLTLRLDDE 730
>gi|393774527|ref|ZP_10362889.1| 30S ribosomal protein S1 [Novosphingobium sp. Rr 2-17]
gi|392720010|gb|EIZ77513.1| 30S ribosomal protein S1 [Novosphingobium sp. Rr 2-17]
Length = 574
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 82/168 (48%), Gaps = 34/168 (20%)
Query: 129 SRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDV 188
+R ++SE+ + L G G V++I +GAF+D G DGL+HV+ +S V
Sbjct: 186 TRAEQRSELI----DKLTEGQVIDGVVKNITDYGAFVDLGGI-DGLLHVTDMSYKRVNHP 240
Query: 189 GSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKP 248
++++G VKV++I N+ET RISL M++ + S P
Sbjct: 241 SEVIAIGDTVKVQIIRINSETQRISLGMKQLE-------------------------SDP 275
Query: 249 GQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEES 296
E + K+ G L+GTV N+T GAF+ L G EG + SE S
Sbjct: 276 W----EGASVKYPVGAKLQGTVTNITEYGAFVELEAGIEGLVHVSEMS 319
Score = 38.9 bits (89), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 65/159 (40%), Gaps = 30/159 (18%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFV-KDVGSIVSVGQEVKVRLIEAN 206
G+ G+V++ FG FI DG+VH+S ++ +D ++ G+EV +++ +
Sbjct: 373 GSQVEGEVKNATEFGLFIGLDGDVDGMVHMSDIAWGISGEDALALHRKGEEVSAVVLDVD 432
Query: 207 AETGRISLTMRESDD-----------------------------ISKLQQQKDATASGDK 237
E RISL M++ + I +++ +GD
Sbjct: 433 VEKERISLGMKQLERGAPAAGGVAAAAGTSTGGSLRRGEVVTVTILEVRDGGLEVQAGDD 492
Query: 238 VRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRS 276
T S G+ RDE + +F GQ L+ V RS
Sbjct: 493 GATGFIKRSDLGRDRDEQRPDRFQVGQKLDAMVTGFDRS 531
>gi|386824043|ref|ZP_10111182.1| putative transcriptional accessory protein [Serratia plymuthica
PRI-2C]
gi|386379118|gb|EIJ19916.1| putative transcriptional accessory protein [Serratia plymuthica
PRI-2C]
Length = 776
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L+D FV+D ++V G VKV+++
Sbjct: 646 DLQPGMILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAGDIVKVKVM 705
Query: 204 EANAETGRISLTMR 217
E + + RI+L+MR
Sbjct: 706 EVDLQRKRIALSMR 719
>gi|242237776|ref|YP_002985957.1| RNA binding S1 domain-containing protein [Dickeya dadantii Ech703]
gi|242129833|gb|ACS84135.1| RNA binding S1 domain protein [Dickeya dadantii Ech703]
Length = 775
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 46/74 (62%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L+D FV D +V G VKV+++
Sbjct: 646 DLTPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADRFVDDPHKVVKAGDIVKVKVL 705
Query: 204 EANAETGRISLTMR 217
E + RI+LTMR
Sbjct: 706 EVDLPRKRIALTMR 719
>gi|355643485|ref|ZP_09053336.1| hypothetical protein HMPREF1030_02422 [Pseudomonas sp. 2_1_26]
gi|386068852|ref|YP_005984156.1| hypothetical protein NCGM2_5961 [Pseudomonas aeruginosa NCGM2.S1]
gi|416875819|ref|ZP_11918910.1| hypothetical protein PA15_12545 [Pseudomonas aeruginosa 152504]
gi|334841592|gb|EGM20218.1| hypothetical protein PA15_12545 [Pseudomonas aeruginosa 152504]
gi|348037411|dbj|BAK92771.1| hypothetical protein NCGM2_5961 [Pseudomonas aeruginosa NCGM2.S1]
gi|354829689|gb|EHF13752.1| hypothetical protein HMPREF1030_02422 [Pseudomonas sp. 2_1_26]
Length = 779
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 49/78 (62%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S LS+ FVKD +V G VKV++
Sbjct: 650 KDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKV 709
Query: 203 IEANAETGRISLTMRESD 220
+E + R+ L+MR SD
Sbjct: 710 MEVDIPRNRVGLSMRMSD 727
>gi|261379513|ref|ZP_05984086.1| protein YhgF [Neisseria subflava NJ9703]
gi|284797976|gb|EFC53323.1| protein YhgF [Neisseria subflava NJ9703]
Length = 757
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 63/117 (53%), Gaps = 11/117 (9%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL G G V ++ FGAF+D G DGLVH+S LS+ FV+D +V G VKV+++
Sbjct: 636 DLQVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAGDVVKVKVL 695
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTR---RSTSKPGQKRDEMKT 257
E +A RI+LTMR D+ TA G++ TR R KP Q+ D T
Sbjct: 696 EVDAARKRIALTMRLDDEAG-------GTAKGNRPSETRHQERRDRKP-QRNDRAPT 744
>gi|107104303|ref|ZP_01368221.1| hypothetical protein PaerPA_01005377 [Pseudomonas aeruginosa PACS2]
gi|254243916|ref|ZP_04937238.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|451986960|ref|ZP_21935122.1| Transcription accessory protein (S1 RNA-binding domain)
[Pseudomonas aeruginosa 18A]
gi|126197294|gb|EAZ61357.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|451755275|emb|CCQ87645.1| Transcription accessory protein (S1 RNA-binding domain)
[Pseudomonas aeruginosa 18A]
Length = 779
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 49/78 (62%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S LS+ FVKD +V G VKV++
Sbjct: 650 KDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKV 709
Query: 203 IEANAETGRISLTMRESD 220
+E + R+ L+MR SD
Sbjct: 710 MEVDIPRNRVGLSMRMSD 727
>gi|421171077|ref|ZP_15628972.1| hypothetical protein PABE177_5729 [Pseudomonas aeruginosa ATCC
700888]
gi|404521448|gb|EKA32045.1| hypothetical protein PABE177_5729 [Pseudomonas aeruginosa ATCC
700888]
Length = 779
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 49/78 (62%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S LS+ FVKD +V G VKV++
Sbjct: 650 KDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKV 709
Query: 203 IEANAETGRISLTMRESD 220
+E + R+ L+MR SD
Sbjct: 710 MEVDIPRNRVGLSMRMSD 727
>gi|312144298|ref|YP_003995744.1| Tex-like protein [Halanaerobium hydrogeniformans]
gi|311904949|gb|ADQ15390.1| Tex-like protein [Halanaerobium hydrogeniformans]
Length = 722
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 52/78 (66%)
Query: 140 VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
+K ED+ G FTGKVR+I FGAFID G DGL+H+S +SD ++ D I+ +GQ V
Sbjct: 643 LKIEDIEEGMIFTGKVRNIVDFGAFIDIGLKQDGLLHISEMSDFYLNDPFEILQIGQNVD 702
Query: 200 VRLIEANAETGRISLTMR 217
V+++ + + RIS T++
Sbjct: 703 VKVLNVDKKRERISFTLK 720
Score = 49.3 bits (116), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 185 VKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRS 244
+KD ++ + +++K I AET I + + DI K QQ R R S
Sbjct: 583 IKDDQTLEKIREKIKTLNIIETAETLEIGIPT--TKDIIKAIQQPG--------RDPRAS 632
Query: 245 TSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMM 304
P ++D +K +G G V+N+ GAFI + ++G L SE SD F
Sbjct: 633 MPGPVFRKDILKIEDIEEGMIFTGKVRNIVDFGAFIDIGLKQDGLLHISEMSD--FYLND 690
Query: 305 GGSSLQVGQEVSVRVLRI--SRGQVTLTMK 332
LQ+GQ V V+VL + R +++ T+K
Sbjct: 691 PFEILQIGQNVDVKVLNVDKKRERISFTLK 720
>gi|444424824|ref|ZP_21220276.1| transcriptional accessory protein [Vibrio campbellii CAIM 519 =
NBRC 15631]
gi|444241947|gb|ELU53465.1| transcriptional accessory protein [Vibrio campbellii CAIM 519 =
NBRC 15631]
Length = 773
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 49/78 (62%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L+D FV D +V G VKV+++
Sbjct: 647 DLEPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAGDIVKVKVM 706
Query: 204 EANAETGRISLTMRESDD 221
E + + RI L+MR +D+
Sbjct: 707 EVDVQRKRIGLSMRMNDE 724
>gi|70725969|ref|YP_252883.1| hypothetical protein SH0968 [Staphylococcus haemolyticus JCSC1435]
gi|68446693|dbj|BAE04277.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 715
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 50/74 (67%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL G +G VR++ FGAF+D G DGLVHVS+LS FVK+ +VSVG V+V +
Sbjct: 637 EDLKEGMKLSGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKKFVKNPMDVVSVGDIVEVWI 696
Query: 203 IEANAETGRISLTM 216
++ + G++SLTM
Sbjct: 697 LDIDKNKGKVSLTM 710
Score = 42.4 bits (98), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R P K D + +G L GTV+N+ GAF+ + ++G + S+ S
Sbjct: 618 RDPRDEFETPILKSDVLSIEDLKEGMKLSGTVRNVVDFGAFVDIGVKQDGLVHVSKLSKK 677
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTM 331
N M S VG V V +L I ++G+V+LTM
Sbjct: 678 FVKNPMDVVS--VGDIVEVWILDIDKNKGKVSLTM 710
>gi|209693812|ref|YP_002261740.1| RNA binding protein [Aliivibrio salmonicida LFI1238]
gi|208007763|emb|CAQ77882.1| putative RNA binding protein [Aliivibrio salmonicida LFI1238]
Length = 778
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 49/77 (63%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL G G V ++ FGAF+D G DGLVH+S LSD FV D +V G VKV+++
Sbjct: 644 DLELGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSDTFVSDPREVVKAGDIVKVKVM 703
Query: 204 EANAETGRISLTMRESD 220
E +A+ RI+LTMR +D
Sbjct: 704 EVDAQRKRIALTMRLND 720
>gi|443312514|ref|ZP_21042131.1| transcriptional accessory protein [Synechocystis sp. PCC 7509]
gi|442777492|gb|ELR87768.1| transcriptional accessory protein [Synechocystis sp. PCC 7509]
Length = 713
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 46/74 (62%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL G G V ++ FGAF+D G DGLVH+S+++D FV D V VGQ VKVR++
Sbjct: 638 DLTVGMELEGVVTNVANFGAFVDIGVHQDGLVHISQMADKFVDDPNKFVKVGQVVKVRVM 697
Query: 204 EANAETGRISLTMR 217
E RISL+MR
Sbjct: 698 EVKENLKRISLSMR 711
Score = 40.0 bits (92), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 15/121 (12%)
Query: 225 LQQQKDATASGDKVRTTRRSTSKPGQK-RDEMKTTKF---VK-------GQDLEGTVKNL 273
LQ+ T +R KPG+ R E K F VK G +LEG V N+
Sbjct: 593 LQKYVTVTVGEPTLRDIINELEKPGRDPRAEFKYATFAAGVKEIRDLTVGMELEGVVTNV 652
Query: 274 TRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISRG--QVTLTM 331
GAF+ + ++G + S+ +D + ++VGQ V VRV+ + +++L+M
Sbjct: 653 ANFGAFVDIGVHQDGLVHISQMADKFVDD--PNKFVKVGQVVKVRVMEVKENLKRISLSM 710
Query: 332 K 332
+
Sbjct: 711 R 711
>gi|421725467|ref|ZP_16164657.1| transcriptional accessory protein [Klebsiella oxytoca M5al]
gi|410373753|gb|EKP28444.1| transcriptional accessory protein [Klebsiella oxytoca M5al]
Length = 776
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL+PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVM 706
Query: 204 EANAETGRISLTMR 217
E RI+LTMR
Sbjct: 707 EVALPRKRIALTMR 720
>gi|383813819|ref|ZP_09969243.1| putative transcriptional accessory protein [Serratia sp. M24T3]
gi|383297492|gb|EIC85802.1| putative transcriptional accessory protein [Serratia sp. M24T3]
Length = 781
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L++ FV+D ++V G VKV+++
Sbjct: 646 DLTPGMVLEGTVTNVTNFGAFVDIGVHQDGLVHISSLANKFVEDPHTVVKTGDIVKVKVM 705
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 706 EVDLQRKRIALTMR 719
>gi|452965052|gb|EME70081.1| TEX protein, partial [Magnetospirillum sp. SO-1]
Length = 222
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 49/75 (65%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S L+D FVKD +V G VKV++
Sbjct: 88 KDLTPGMILEGVVTNVTNFGAFVDIGVHQDGLVHISVLADRFVKDPHEVVKPGDLVKVKV 147
Query: 203 IEANAETGRISLTMR 217
+E + + RI+L+MR
Sbjct: 148 LEVDMKRNRIALSMR 162
>gi|285018413|ref|YP_003376124.1| transcription-related protein [Xanthomonas albilineans GPE PC73]
gi|283473631|emb|CBA16134.1| putative transcription-related protein [Xanthomonas albilineans GPE
PC73]
Length = 786
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 49/78 (62%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S LSD++VKD +V G VKV++
Sbjct: 650 KDLKPGMVLEGVVSNVAAFGAFVDIGVHQDGLVHISALSDSYVKDPREVVKAGDIVKVKV 709
Query: 203 IEANAETGRISLTMRESD 220
+E + RI+LT R D
Sbjct: 710 LEVDVARKRIALTRRLDD 727
Score = 39.3 bits (90), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 15/122 (12%)
Query: 227 QQKDATASGDKVRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTR 275
Q DAT VR + KPG+ R E K +F G + LEG V N+
Sbjct: 608 QFTDATFGVPTVRDILKELEKPGRDPRPEFKAARFADGVEDIKDLKPGMVLEGVVSNVAA 667
Query: 276 SGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKK 333
GAF+ + ++G + S SD + ++ G V V+VL ++R ++ LT +
Sbjct: 668 FGAFVDIGVHQDGLVHISALSDSYVKDPR--EVVKAGDIVKVKVLEVDVARKRIALTRRL 725
Query: 334 ED 335
+D
Sbjct: 726 DD 727
>gi|429743483|ref|ZP_19277037.1| Tex-like protein [Neisseria sp. oral taxon 020 str. F0370]
gi|429165266|gb|EKY07331.1| Tex-like protein [Neisseria sp. oral taxon 020 str. F0370]
Length = 756
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 50/79 (63%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL G G V ++ FGAF+D G DGLVH+S LS+ FV+D +V G VKV++
Sbjct: 635 KDLEIGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAGDVVKVKV 694
Query: 203 IEANAETGRISLTMRESDD 221
+E + RI+LTMR SDD
Sbjct: 695 LEVDVPRKRIALTMRLSDD 713
>gi|429333097|ref|ZP_19213803.1| RNA-binding S1 domain-containing protein [Pseudomonas putida CSV86]
gi|428762198|gb|EKX84406.1| RNA-binding S1 domain-containing protein [Pseudomonas putida CSV86]
Length = 772
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 49/78 (62%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL+PG G V ++ FGAF+D G DGLVH+S LS+ F+KD V G VKV++
Sbjct: 644 KDLVPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKV 703
Query: 203 IEANAETGRISLTMRESD 220
+E + R+ L+MR SD
Sbjct: 704 MEVDIPRKRVGLSMRMSD 721
Score = 40.0 bits (92), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 18/152 (11%)
Query: 207 AETGR-ISLTMRESDDISKLQQQK--DATASGDKVRTTRRSTSKPGQK-RDEMKTTKF-- 260
A+TGR I + +S + +L +K D T V + KPG+ R E KT +F
Sbjct: 579 ADTGRDIRSLIGDSGFLKRLDPKKFTDETFGLPTVTDILQELDKPGRDPRPEFKTAEFQE 638
Query: 261 --------VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVG 312
V G LEG V N+T GAF+ + ++G + S S+ + +++ G
Sbjct: 639 GVEDLKDLVPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPR--EAVKAG 696
Query: 313 QEVSVRVLR--ISRGQVTLTMKKEDDVGSNLQ 342
V V+V+ I R +V L+M+ D G ++
Sbjct: 697 DVVKVKVMEVDIPRKRVGLSMRMSDTPGEKVE 728
>gi|424048275|ref|ZP_17785829.1| protein yhgF [Vibrio cholerae HENC-03]
gi|408882910|gb|EKM21705.1| protein yhgF [Vibrio cholerae HENC-03]
Length = 773
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 49/78 (62%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L+D FV D +V G VKV+++
Sbjct: 647 DLEPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAGDIVKVKVM 706
Query: 204 EANAETGRISLTMRESDD 221
E + + RI L+MR +D+
Sbjct: 707 EVDVQRKRIGLSMRMNDE 724
>gi|220930899|ref|YP_002507807.1| RNA binding S1 domain-containing protein [Halothermothrix orenii H
168]
gi|219992209|gb|ACL68812.1| RNA binding S1 domain protein [Halothermothrix orenii H 168]
Length = 722
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 50/78 (64%)
Query: 140 VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVK 199
+K EDL G G VR++ FGAF+D G DGLVH+S +S ++V D +V VG VK
Sbjct: 644 LKMEDLEAGMLLQGTVRNVVDFGAFVDIGVKVDGLVHISEMSHDYVDDPLKVVQVGDTVK 703
Query: 200 VRLIEANAETGRISLTMR 217
V+++E + RISL+M+
Sbjct: 704 VKILEVDERRNRISLSMK 721
Score = 45.4 bits (106), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP + D +K G L+GTV+N+ GAF+ + +G + SE S D
Sbjct: 628 RDPRDELPKPIFRSDVLKMEDLEAGMLLQGTVRNVVDFGAFVDIGVKVDGLVHISEMSHD 687
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMK 332
+ + +QVG V V++L + R +++L+MK
Sbjct: 688 YVDDPL--KVVQVGDTVKVKILEVDERRNRISLSMK 721
>gi|178847555|pdb|3BZC|A Chain A, Crystal Structure Of The Tex Protein From Pseudomonas
Aeruginosa, Crystal Form I
gi|178847556|pdb|3BZK|A Chain A, Crystal Structure Of The Tex Protein From Pseudomonas
Aeruginosa, Crystal Form 2
Length = 785
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 49/78 (62%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S LS+ FVKD +V G VKV++
Sbjct: 650 KDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKV 709
Query: 203 IEANAETGRISLTMRESD 220
+E + R+ L+MR SD
Sbjct: 710 MEVDIPRNRVGLSMRMSD 727
>gi|152988034|ref|YP_001351262.1| hypothetical protein PSPA7_5945 [Pseudomonas aeruginosa PA7]
gi|150963192|gb|ABR85217.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
Length = 779
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 49/78 (62%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S LS+ FVKD +V G VKV++
Sbjct: 650 KDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKV 709
Query: 203 IEANAETGRISLTMRESD 220
+E + R+ L+MR SD
Sbjct: 710 MEVDIPRNRVGLSMRMSD 727
Score = 38.9 bits (89), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 18/156 (11%)
Query: 207 AETGR-ISLTMRESDDISKLQQQK--DATASGDKVRTTRRSTSKPGQK-RDEMKTTKFVK 262
A+TGR I + +S + +L+ +K D T V + KPG+ R E KT +F +
Sbjct: 585 ADTGRDIRSLIGDSAFLKRLEPKKFTDETFGLPTVTDILKELDKPGRDPRPEFKTAEFQE 644
Query: 263 GQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVG 312
G + LEG V N+T GAF+ + ++G + S S+ + ++ G
Sbjct: 645 GVESLKDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPY--EVVKAG 702
Query: 313 QEVSVRVLR--ISRGQVTLTMKKEDDVGSNLQLTQG 346
V V+V+ I R +V L+M+ D G ++ +G
Sbjct: 703 DIVKVKVMEVDIPRNRVGLSMRMSDTPGEKVEGQRG 738
>gi|239832549|ref|ZP_04680878.1| cytochrome c oxidase, subunit I [Ochrobactrum intermedium LMG 3301]
gi|239824816|gb|EEQ96384.1| cytochrome c oxidase, subunit I [Ochrobactrum intermedium LMG 3301]
Length = 786
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 47/76 (61%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVHVS+L+D FVK +V G VKVR+
Sbjct: 664 KDLKPGMLLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKAPHEVVKAGDVVKVRV 723
Query: 203 IEANAETGRISLTMRE 218
E + RI LTMR+
Sbjct: 724 TEVDVPRKRIGLTMRK 739
Score = 39.7 bits (91), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT F G D LEGTV N+ GAF+ + +
Sbjct: 633 VRDIIAELDKPGRDPRPEFKTATFADGIDDIKDLKPGMLLEGTVTNVAAFGAFVDIGVHQ 692
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRV--LRISRGQVTLTMKKE 334
+G + S+ +D F ++ G V VRV + + R ++ LTM+K+
Sbjct: 693 DGLVHVSQLADR-FVK-APHEVVKAGDVVKVRVTEVDVPRKRIGLTMRKD 740
>gi|116053349|ref|YP_793673.1| hypothetical protein PA14_68710 [Pseudomonas aeruginosa UCBPP-PA14]
gi|421177462|ref|ZP_15635114.1| hypothetical protein PACI27_5679 [Pseudomonas aeruginosa CI27]
gi|115588570|gb|ABJ14585.1| putative transcriptional accessory protein [Pseudomonas aeruginosa
UCBPP-PA14]
gi|404529584|gb|EKA39619.1| hypothetical protein PACI27_5679 [Pseudomonas aeruginosa CI27]
Length = 779
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 49/78 (62%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S LS+ FVKD +V G VKV++
Sbjct: 650 KDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKV 709
Query: 203 IEANAETGRISLTMRESD 220
+E + R+ L+MR SD
Sbjct: 710 MEVDIPRNRVGLSMRMSD 727
>gi|375264170|ref|YP_005021613.1| hypothetical protein VEJY3_00695 [Vibrio sp. EJY3]
gi|369839494|gb|AEX20638.1| hypothetical protein VEJY3_00695 [Vibrio sp. EJY3]
Length = 776
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 61/106 (57%), Gaps = 3/106 (2%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L+D FV D +V G VKV+++
Sbjct: 647 DLEPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAGDIVKVKVM 706
Query: 204 EANAETGRISLTMRESDDISK--LQQQKDATASGDKVRTT-RRSTS 246
E + + RI+L+MR +D+ + Q+ DA D+ R RR S
Sbjct: 707 EVDIQRKRIALSMRLNDEPGQDNRSQRSDAPRRNDQQRRQPRRDNS 752
>gi|452881526|ref|ZP_21958265.1| hypothetical protein G039_36484 [Pseudomonas aeruginosa VRFPA01]
gi|452182279|gb|EME09297.1| hypothetical protein G039_36484 [Pseudomonas aeruginosa VRFPA01]
Length = 752
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 49/78 (62%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S LS+ FVKD +V G VKV++
Sbjct: 650 KDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKV 709
Query: 203 IEANAETGRISLTMRESD 220
+E + R+ L+MR SD
Sbjct: 710 MEVDIPRNRVGLSMRMSD 727
Score = 39.3 bits (90), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 18/156 (11%)
Query: 207 AETGR-ISLTMRESDDISKLQQQK--DATASGDKVRTTRRSTSKPGQK-RDEMKTTKFVK 262
A+TGR I + +S + +L+ +K D T V + KPG+ R E KT +F +
Sbjct: 585 ADTGRDIRSLIGDSAFLKRLEPKKFTDETFGLPTVTDILKELDKPGRDPRPEFKTAEFQE 644
Query: 263 GQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVG 312
G + LEG V N+T GAF+ + ++G + S S+ + ++ G
Sbjct: 645 GVESLKDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPY--EVVKAG 702
Query: 313 QEVSVRVLR--ISRGQVTLTMKKEDDVGSNLQLTQG 346
V V+V+ I R +V L+M+ D G ++ +G
Sbjct: 703 DIVKVKVMEVDIPRNRVGLSMRMSDTPGEKVEGQRG 738
>gi|444310366|ref|ZP_21145990.1| RNA-binding S1 domain-containing protein [Ochrobactrum intermedium
M86]
gi|443486336|gb|ELT49114.1| RNA-binding S1 domain-containing protein [Ochrobactrum intermedium
M86]
Length = 767
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 47/76 (61%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVHVS+L+D FVK +V G VKVR+
Sbjct: 645 KDLKPGMLLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKAPHEVVKAGDVVKVRV 704
Query: 203 IEANAETGRISLTMRE 218
E + RI LTMR+
Sbjct: 705 TEVDVPRKRIGLTMRK 720
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT F G D LEGTV N+ GAF+ + +
Sbjct: 614 VRDIIAELDKPGRDPRPEFKTATFADGIDDIKDLKPGMLLEGTVTNVAAFGAFVDIGVHQ 673
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRV--LRISRGQVTLTMKKE 334
+G + S+ +D F ++ G V VRV + + R ++ LTM+K+
Sbjct: 674 DGLVHVSQLADR-FVK-APHEVVKAGDVVKVRVTEVDVPRKRIGLTMRKD 721
>gi|333023225|ref|ZP_08451289.1| putative transcription accessory protein [Streptomyces sp. Tu6071]
gi|332743077|gb|EGJ73518.1| putative transcription accessory protein [Streptomyces sp. Tu6071]
Length = 853
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 50/82 (60%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K DL PG G V ++ FGAFID G DGLVHVS LS FVKD +V G VKV
Sbjct: 654 KLSDLEPGMVLEGVVTNVAAFGAFIDIGVHQDGLVHVSALSREFVKDPREVVKPGDIVKV 713
Query: 201 RLIEANAETGRISLTMRESDDI 222
++++ + RISLT+R D+I
Sbjct: 714 KVLDVDLPRKRISLTLRLDDEI 735
>gi|322515333|ref|ZP_08068330.1| YhgF like protein [Actinobacillus ureae ATCC 25976]
gi|322118709|gb|EFX90921.1| YhgF like protein [Actinobacillus ureae ATCC 25976]
Length = 779
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL G G V ++ FGAF+D G DGLVH+S LS++FV++ +V VG VKV++
Sbjct: 653 KDLKVGMILEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVEEPHKVVKVGDLVKVKV 712
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSK 247
+E + + RI+LTMR D + D ASG + R+++ K
Sbjct: 713 LEVDVQRKRIALTMRLED------KPTDKPASGRNPQENRKNSEK 751
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 15/102 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT F+ G + LEGTV N+ GAF+ + ++G + S
Sbjct: 631 KPGRDPRGEFKTATFMDGVEDIKDLKVGMILEGTVTNVANFGAFVDIGVHQDGLVHISML 690
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKED 335
S+ ++VG V V+VL + R ++ LTM+ ED
Sbjct: 691 SNSFVEE--PHKVVKVGDLVKVKVLEVDVQRKRIALTMRLED 730
>gi|319638887|ref|ZP_07993645.1| hypothetical protein HMPREF0604_01269 [Neisseria mucosa C102]
gi|317399791|gb|EFV80454.1| hypothetical protein HMPREF0604_01269 [Neisseria mucosa C102]
Length = 757
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 12/110 (10%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL G G V ++ FGAF+D G DGLVH+S LS+ FV+D +V G VKV+++
Sbjct: 636 DLQVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAGDVVKVKVL 695
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRD 253
E +A RI+LTMR D+ +G ++ R S ++ ++RD
Sbjct: 696 EVDAARKRIALTMRLDDE------------AGGAAKSNRPSETRHQERRD 733
>gi|264677719|ref|YP_003277625.1| truncated RNA binding S1, partial [Comamonas testosteroni CNB-2]
gi|262208231|gb|ACY32329.1| truncated RNA binding S1 [Comamonas testosteroni CNB-2]
Length = 387
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 50/75 (66%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL G T G V ++ FGAF+D G DGLVHVS++S F++D +V GQ VKV++
Sbjct: 253 KDLKEGMTLEGTVSNVAQFGAFVDLGVHQDGLVHVSQMSHKFIEDAREVVKTGQIVKVKV 312
Query: 203 IEANAETGRISLTMR 217
+E + + RISLTM+
Sbjct: 313 LEVDVDRKRISLTMK 327
Score = 39.3 bits (90), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLR- 321
G LEGTV N+ + GAF+ L ++G + S+ S + ++ GQ V V+VL
Sbjct: 258 GMTLEGTVSNVAQFGAFVDLGVHQDGLVHVSQMSHKFIEDAR--EVVKTGQIVKVKVLEV 315
Query: 322 -ISRGQVTLTMK 332
+ R +++LTMK
Sbjct: 316 DVDRKRISLTMK 327
>gi|153833924|ref|ZP_01986591.1| protein YhgF [Vibrio harveyi HY01]
gi|148869762|gb|EDL68739.1| protein YhgF [Vibrio harveyi HY01]
Length = 773
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 49/78 (62%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L+D FV D +V G VKV+++
Sbjct: 647 DLEPGMILEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFVSDPREVVKAGDIVKVKVM 706
Query: 204 EANAETGRISLTMRESDD 221
E + + RI L+MR +D+
Sbjct: 707 EVDVQRKRIGLSMRMNDE 724
>gi|319650349|ref|ZP_08004492.1| hypothetical protein HMPREF1013_01097 [Bacillus sp. 2_A_57_CT2]
gi|317397910|gb|EFV78605.1| hypothetical protein HMPREF1013_01097 [Bacillus sp. 2_A_57_CT2]
Length = 132
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 61/107 (57%), Gaps = 9/107 (8%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G+ TGKV IQP+GAF+ T GLVH+S ++ FVKD+ + VG EVKV+++ +
Sbjct: 8 GSVITGKVTGIQPYGAFVALDENTQGLVHISEVTHGFVKDINEHLKVGDEVKVKVLSVDE 67
Query: 208 ETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDE 254
E G+I L++R ++ +A + K R R+ + P + DE
Sbjct: 68 EAGKIGLSIRATE---------EAPQAEAKARKPRKRQAAPIKMEDE 105
>gi|410658264|ref|YP_006910635.1| Transcription accessory protein (S1 RNA-binding domain)
[Dehalobacter sp. DCA]
gi|410661249|ref|YP_006913620.1| Transcription accessory protein (S1 RNA-binding domain)
[Dehalobacter sp. CF]
gi|409020619|gb|AFV02650.1| Transcription accessory protein (S1 RNA-binding domain)
[Dehalobacter sp. DCA]
gi|409023605|gb|AFV05635.1| Transcription accessory protein (S1 RNA-binding domain)
[Dehalobacter sp. CF]
Length = 712
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 53/78 (67%)
Query: 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200
K EDL G + G VR+I FGAF+D G DGLVH+S LS+++V+ ++SVG VKV
Sbjct: 634 KLEDLQVGISLEGTVRNIVDFGAFVDIGVKNDGLVHISELSNSYVRHPMEVISVGDIVKV 693
Query: 201 RLIEANAETGRISLTMRE 218
R++ + GR+SL+M++
Sbjct: 694 RVLGIDHARGRVSLSMKD 711
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R +P ++D K G LEGTV+N+ GAF+ + +G + SE S+
Sbjct: 617 RDPREDLPRPLLRQDITKLEDLQVGISLEGTVRNIVDFGAFVDIGVKNDGLVHISELSNS 676
Query: 299 GFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMK 332
+ M + VG V VRVL I +RG+V+L+MK
Sbjct: 677 YVRHPM--EVISVGDIVKVRVLGIDHARGRVSLSMK 710
>gi|326330770|ref|ZP_08197072.1| S1 RNA binding domain protein, partial [Nocardioidaceae bacterium
Broad-1]
gi|325951453|gb|EGD43491.1| S1 RNA binding domain protein [Nocardioidaceae bacterium Broad-1]
Length = 811
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 50/78 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAFID G DGLVH+S +SD FV+D +V G V+V+++
Sbjct: 702 DLRPGMVLEGTVTNVAAFGAFIDIGVHQDGLVHISAMSDKFVEDPRDVVRSGDVVRVKVL 761
Query: 204 EANAETGRISLTMRESDD 221
E + RISLT+R +D+
Sbjct: 762 EVDEARKRISLTLRLNDE 779
>gi|119509069|ref|ZP_01628220.1| hypothetical protein N9414_04690 [Nodularia spumigena CCY9414]
gi|119466235|gb|EAW47121.1| hypothetical protein N9414_04690 [Nodularia spumigena CCY9414]
Length = 719
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL G G V ++ FGAF+D G DGLVH+S+L+D FV D IV VGQ VK+R++
Sbjct: 642 DLEVGMELEGIVTNVANFGAFVDIGVHQDGLVHISQLADRFVDDPQKIVKVGQVVKIRVL 701
Query: 204 EANAETGRISLTMR 217
E N + RISL+++
Sbjct: 702 EINEKLKRISLSIK 715
>gi|440733761|ref|ZP_20913442.1| transcription-related protein, partial [Xanthomonas translucens
DAR61454]
gi|440358989|gb|ELP96318.1| transcription-related protein, partial [Xanthomonas translucens
DAR61454]
Length = 780
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 49/78 (62%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
+DL PG G V ++ FGAF+D G DGLVH+S LSD++VKD +V G VKV++
Sbjct: 650 KDLKPGMVLEGVVSNVAAFGAFVDIGVHQDGLVHISALSDSYVKDPRDVVKAGDIVKVKV 709
Query: 203 IEANAETGRISLTMRESD 220
+E + RI+LT R D
Sbjct: 710 LEVDVARKRIALTRRLDD 727
>gi|157372859|ref|YP_001480848.1| RNA-binding S1 domain-containing protein [Serratia proteamaculans
568]
gi|157324623|gb|ABV43720.1| RNA binding S1 domain protein [Serratia proteamaculans 568]
Length = 777
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L+D FV+D ++V G VKV+++
Sbjct: 646 DLQPGMILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAGDIVKVKVM 705
Query: 204 EANAETGRISLTMR 217
E + + RI+L+MR
Sbjct: 706 EVDLQRKRIALSMR 719
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.306 0.124 0.328
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,924,776,019
Number of Sequences: 23463169
Number of extensions: 422028643
Number of successful extensions: 1298979
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 10031
Number of HSP's successfully gapped in prelim test: 16129
Number of HSP's that attempted gapping in prelim test: 1191247
Number of HSP's gapped (non-prelim): 94161
length of query: 681
length of database: 8,064,228,071
effective HSP length: 150
effective length of query: 531
effective length of database: 8,839,720,017
effective search space: 4693891329027
effective search space used: 4693891329027
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 81 (35.8 bits)