BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005707
(681 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8CWR9|RS1_STRR6 30S Ribosomal protein S1 OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=rpsA PE=1 SV=1
Length = 400
Score = 87.0 bits (214), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 99/190 (52%), Gaps = 34/190 (17%)
Query: 145 LIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIE 204
L G TGKV I FGAFID G DGLVH++ LS S+V+VG+E++V++++
Sbjct: 191 LAVGDVVTGKVARITSFGAFIDLGG-VDGLVHLTELSHERNVSPKSVVTVGEEIEVKILD 249
Query: 205 ANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQ 264
N E GR+SL+++ AT G P ++ K KG
Sbjct: 250 LNEEEGRVSLSLK-------------ATVPG------------PWDGVEQ----KLAKGD 280
Query: 265 DLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISR 324
+EGTVK LT GAF+ + G +G + S+ S N +L+VGQEV V+VL ++
Sbjct: 281 VVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKRIENPK--EALKVGQEVQVKVLEVNA 338
Query: 325 G--QVTLTMK 332
+V+L++K
Sbjct: 339 DAERVSLSIK 348
>sp|Q9JZ44|RS1_NEIMB 30S ribosomal protein S1 OS=Neisseria meningitidis serogroup B
(strain MC58) GN=rpsA PE=1 SV=1
Length = 561
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 97/193 (50%), Gaps = 33/193 (17%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E+L G+ G V++I +GAF+D G DGL+H++ L+ VK ++ VGQEV+ ++
Sbjct: 188 ENLQEGSVIKGIVKNITDYGAFVDLGGI-DGLLHITDLAWRRVKHPSEVLEVGQEVEAKV 246
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
++ + E R+SL M+ Q + SG TRR + +
Sbjct: 247 LKFDQEKQRVSLGMK---------QLGEDPWSG----LTRR----------------YPQ 277
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G L G V NLT GAF+ + +G EG + S E D N+ +Q+G EV V +L I
Sbjct: 278 GTRLFGKVSNLTDYGAFVEIEQGIEGLVHVS-EMDWTNKNVHPSKVVQLGDEVEVMILEI 336
Query: 323 SRG--QVTLTMKK 333
G +++L MK+
Sbjct: 337 DEGRRRISLGMKQ 349
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 32/151 (21%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDV--GSIVSVGQEVKVRLIEA 205
G GKV ++ +GAF++ +GLVHVS + D K+V +V +G EV+V ++E
Sbjct: 278 GTRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEM-DWTNKNVHPSKVVQLGDEVEVMILEI 336
Query: 206 NAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQD 265
+ RISL M++ + P ++ KG
Sbjct: 337 DEGRRRISLGMKQCQ-------------------------ANPWEEF----AANHNKGDK 367
Query: 266 LEGTVKNLTRSGAFISLPEGEEGFLPTSEES 296
+ G VK++T G F+ LP G +G + S+ S
Sbjct: 368 ISGAVKSITDFGVFVGLPGGIDGLVHLSDLS 398
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 46/197 (23%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLS-----DNFVKDVGSIVSVGQEVKVRL 202
G +G V+SI FG F+ DGLVH+S LS + V+ G+EV+ +
Sbjct: 365 GDKISGAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKK----GEEVEAVV 420
Query: 203 IEANAETGRISLTMR--ESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKF 260
+ + E RISL ++ E D D
Sbjct: 421 LAIDVEKERISLGIKQLEGDPFGNFISVND------------------------------ 450
Query: 261 VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVL 320
KG ++G+VK++ GA I+L + EG+LP SE + D ++ + L+ G EV ++
Sbjct: 451 -KGSLVKGSVKSVDAKGAVIALSDEVEGYLPASEFAADRVEDLT--TKLKEGDEVEAVIV 507
Query: 321 RISRGQ--VTLTMKKED 335
+ R + L++K +D
Sbjct: 508 TVDRKNRSIKLSVKAKD 524
>sp|Q45388|TEX_BORPE Protein tex OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589
/ NCTC 13251) GN=tex PE=4 SV=2
Length = 791
Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 50/77 (64%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S L++ FVKD +V VGQ V V+++
Sbjct: 666 DLFPGMVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVTVKVL 725
Query: 204 EANAETGRISLTMRESD 220
E + R++LTMR +D
Sbjct: 726 EVDVARKRVALTMRLND 742
Score = 42.0 bits (97), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 15/111 (13%)
Query: 238 VRTTRRSTSKPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGE 286
VR KPG+ R E KT +F +G + LEG V N+ GAF+ + +
Sbjct: 634 VRDIFAELEKPGRDPRPEFKTAQFKEGVETLNDLFPGMVLEGVVTNVANFGAFVDIGVHQ 693
Query: 287 EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLR--ISRGQVTLTMKKED 335
+G + S ++ + ++VGQ V+V+VL ++R +V LTM+ D
Sbjct: 694 DGLVHISALAEKFVKDPR--DVVRVGQTVTVKVLEVDVARKRVALTMRLND 742
>sp|Q6GGT5|RS1_STAAR 30S ribosomal protein S1 OS=Staphylococcus aureus (strain MRSA252)
GN=rpsA PE=3 SV=1
Length = 391
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 112/242 (46%), Gaps = 41/242 (16%)
Query: 100 ASDIPSDVETSESSSIKSEASPTLAESRR---SRTARKSEMPPVKNEDLI----PGATFT 152
++D D + +I+ + E+ R SR A + E K + L+ G
Sbjct: 139 STDFIEDFSVFDGQTIRIKVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDVID 198
Query: 153 GKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRI 212
GKV + FGAFID G DGLVHVS LS V+ +VS+GQ+VKV++ + +T RI
Sbjct: 199 GKVARLTQFGAFIDIGG-VDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERI 257
Query: 213 SLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKN 272
SL+++ D + T + GQ F + D+EG V
Sbjct: 258 SLSIK------------------DTLPTPFENIK--GQ---------FHENDDIEGVVVR 288
Query: 273 LTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLT 330
L GAF+ + G +G + SE + G L+ GQ+V+V++L I +V+L+
Sbjct: 289 LANFGAFVEIAPGVQGLVHISEIAHKHIGT--PGEVLEPGQQVNVKILGIDEENERVSLS 346
Query: 331 MK 332
+K
Sbjct: 347 IK 348
>sp|P38494|RS1H_BACSU 30S ribosomal protein S1 homolog OS=Bacillus subtilis (strain 168)
GN=ypfD PE=1 SV=1
Length = 382
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 94/187 (50%), Gaps = 34/187 (18%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G+ GKV+ + FGAF+D G DGLVH+S+LS + V+ +V GQEVKV+++ +
Sbjct: 188 GSVLDGKVQRLTDFGAFVDIGGI-DGLVHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDR 246
Query: 208 ETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLE 267
+ RISL+++++ G+KV KPG LE
Sbjct: 247 DNERISLSIKDT-------LPGPWNQIGEKV--------KPGDV--------------LE 277
Query: 268 GTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISRGQ- 326
GTV+ L GAF+ + G EG + S+ S+ L+ GQ V V+VL ++ +
Sbjct: 278 GTVQRLVSFGAFVEILPGVEGLVHISQISNKHIGT--PHEVLEEGQTVKVKVLDVNENEE 335
Query: 327 -VTLTMK 332
++L+M+
Sbjct: 336 RISLSMR 342
Score = 62.8 bits (151), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 4/128 (3%)
Query: 104 PSDVETSESSSIKSEASPTLAESRRSRTARKSEMPPVKN---EDLIPGATFTGKVRSIQP 160
PSDV E +K + ++ R + K +P N E + PG G V+ +
Sbjct: 227 PSDV-VEEGQEVKVKVLSVDRDNERISLSIKDTLPGPWNQIGEKVKPGDVLEGTVQRLVS 285
Query: 161 FGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESD 220
FGAF++ +GLVH+S++S+ + ++ GQ VKV++++ N RISL+MRE +
Sbjct: 286 FGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNENEERISLSMRELE 345
Query: 221 DISKLQQQ 228
+ K Q+
Sbjct: 346 ETPKADQE 353
>sp|P46837|YHGF_ECOLI Protein YhgF OS=Escherichia coli (strain K12) GN=yhgF PE=1 SV=3
Length = 773
Score = 77.4 bits (189), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL PG G V ++ FGAF+D G DGLVH+S LS+ FV+D ++V G VKV+++
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706
Query: 204 EANAETGRISLTMR 217
E + + RI+LTMR
Sbjct: 707 EVDLQRKRIALTMR 720
Score = 38.1 bits (87), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 15/105 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT +F G + LEG V N+T GAF+ + ++G + S
Sbjct: 624 KPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSL 683
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDDVG 338
S+ + + ++ G V V+VL + R ++ LTM+ ++ G
Sbjct: 684 SNKFVED--PHTVVKAGDIVKVKVLEVDLQRKRIALTMRLDEQPG 726
>sp|Q1RJH1|RS1_RICBR 30S ribosomal protein S1 OS=Rickettsia bellii (strain RML369-C)
GN=rpsA PE=3 SV=1
Length = 572
Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 100/213 (46%), Gaps = 40/213 (18%)
Query: 123 LAESRRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSD 182
L ESR AR + +K G G V++I +GAFID G+ DGL+H++ +S
Sbjct: 190 LEESRSE--ARDEMLSKIKE-----GMILEGTVKNITDYGAFIDLGS-VDGLLHLTDISW 241
Query: 183 NFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTR 242
V ++ Q+VKV +I+ N ET RISL M++ D
Sbjct: 242 ARVNHPSEVLEFNQKVKVMVIKFNEETKRISLGMKQLD---------------------- 279
Query: 243 RSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFAN 302
P +K E +F G+ + G V N G FI L +G EG + +SE S +N
Sbjct: 280 ---YNPWEKIKE----EFPVGKKMTGKVTNFADYGVFIELKDGLEGLVHSSEISWLK-SN 331
Query: 303 MMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKK 333
+L +GQEV VL + + +V+L++K+
Sbjct: 332 QNPRKTLTIGQEVEFMVLEVDTEKHRVSLSIKQ 364
Score = 42.0 bits (97), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 23/175 (13%)
Query: 168 GAFTDGLVHVSRLSDNFVKDVGSIVSV--GQEVKVRLIEANAETGRISLTMRESDDISKL 225
G F DG + R+ F D+ +V+ G +V VR I+ + + +R+ I +
Sbjct: 121 GEFVDGTIF-GRVKGGFTVDLSGVVAFLPGSQVDVRPIKDPSSI----MNIRQPFKILSM 175
Query: 226 QQQKDATASGDKVRTTRRSTSKPG--QKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLP 283
++ G+ V +RR+ + + RDEM +K +G LEGTVKN+T GAFI L
Sbjct: 176 DKK-----LGNIV-VSRRAILEESRSEARDEM-LSKIKEGMILEGTVKNITDYGAFIDLG 228
Query: 284 EGEEGFLPTSEESDDGFANMMGGSS-LQVGQEVSVRVLRISR--GQVTLTMKKED 335
+G L +D +A + S L+ Q+V V V++ + +++L MK+ D
Sbjct: 229 -SVDGLLHL---TDISWARVNHPSEVLEFNQKVKVMVIKFNEETKRISLGMKQLD 279
>sp|P14129|RS1_RHIME 30S ribosomal protein S1 OS=Rhizobium meliloti (strain 1021)
GN=rpsA PE=3 SV=2
Length = 568
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 82/170 (48%), Gaps = 38/170 (22%)
Query: 129 SRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDV 188
SR ++SE+ ++L G G V++I +GAF+D G DGL+HV+ ++ V
Sbjct: 183 SRAEQRSEIV----QNLEEGQVVEGVVKNITDYGAFVDLGGI-DGLLHVTDMAWRRVNHP 237
Query: 189 GSIVSVGQEVKVRLIEANAETGRISLTMR--ESDDISKLQQQKDATASGDKVRTTRRSTS 246
I+++GQ+VKV++I N ET RISL M+ ESD +
Sbjct: 238 SEILNIGQQVKVQIIRINQETHRISLGMKQLESDPWDGI--------------------- 276
Query: 247 KPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEES 296
K+ G+ + GTV N+T GAF+ L G EG + SE S
Sbjct: 277 ----------GAKYPVGKKISGTVTNITDYGAFVELEPGIEGLIHISEMS 316
Score = 40.0 bits (92), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 7/75 (9%)
Query: 262 KGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSS-LQVGQEVSVRVL 320
+GQ +EG VKN+T GAF+ L G +G L +D + + S L +GQ+V V+++
Sbjct: 197 EGQVVEGVVKNITDYGAFVDLG-GIDGLLHV---TDMAWRRVNHPSEILNIGQQVKVQII 252
Query: 321 RISR--GQVTLTMKK 333
RI++ +++L MK+
Sbjct: 253 RINQETHRISLGMKQ 267
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 32/149 (21%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDV--GSIVSVGQEVKVRLIEA 205
G +G V +I +GAF++ +GL+H+S +S K+V G I+S QEV V ++E
Sbjct: 283 GKKISGTVTNITDYGAFVELEPGIEGLIHISEMSWT-KKNVHPGKILSTSQEVDVVVLEV 341
Query: 206 NAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQD 265
+ RISL ++++ L+ A A S P G +
Sbjct: 342 DPTKRRISLGLKQT-----LENPWQAFAH-----------SHPA-------------GTE 372
Query: 266 LEGTVKNLTRSGAFISLPEGEEGFLPTSE 294
+EG VKN T G FI L +G + S+
Sbjct: 373 VEGEVKNKTEFGLFIGLDGDVDGMVHLSD 401
>sp|P71353|Y568_HAEIN Uncharacterized protein HI_0568 OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0568 PE=4 SV=1
Length = 762
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL G G V ++ FGAF+D G DGLVH+S LSD FV+D +V G VKV+++
Sbjct: 647 DLKSGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGNIVKVKVL 706
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATAS----GDKVRTTRRS 244
E + RI+LTMR + K + D T S G+ R R S
Sbjct: 707 EVDVPRKRIALTMRLDESAVKNDSKSDRTLSTRPRGNMQREARNS 751
Score = 40.4 bits (93), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 15/107 (14%)
Query: 247 KPGQK-RDEMKTTKFVKGQD----------LEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E KT F +G + LEGTV N+T GAF+ + ++G + S
Sbjct: 624 KPGRDPRGEFKTAVFAEGVEEITDLKSGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSL 683
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKKEDDVGSN 340
SD + ++ G V V+VL + R ++ LTM+ ++ N
Sbjct: 684 SDKFVED--PHQVVKTGNIVKVKVLEVDVPRKRIALTMRLDESAVKN 728
>sp|P57072|YHGF_NEIMA Uncharacterized protein NMA0194 OS=Neisseria meningitidis serogroup
A / serotype 4A (strain Z2491) GN=NMA0194 PE=4 SV=1
Length = 757
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 49/78 (62%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL G G V ++ FGAF+D G DGLVH+S LS+ FV+D +V G VKV+++
Sbjct: 636 DLQVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAGDVVKVKVL 695
Query: 204 EANAETGRISLTMRESDD 221
E +A RI+LTMR D+
Sbjct: 696 EVDAARKRIALTMRLDDE 713
Score = 37.0 bits (84), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 15/105 (14%)
Query: 247 KPGQK-RDEMKTTKFVKG----------QDLEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E +T F +G LEG V N+ GAF+ + ++G + S
Sbjct: 613 KPGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDIGVHQDGLVHISAL 672
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDDVG 338
S+ + ++ G V V+VL + +R ++ LTM+ +D+ G
Sbjct: 673 SNKFVQDPR--EVVKAGDVVKVKVLEVDAARKRIALTMRLDDEPG 715
>sp|Q51152|YHGF_NEIMB Uncharacterized protein NMB0075 OS=Neisseria meningitidis serogroup
B (strain MC58) GN=NMB0075 PE=4 SV=2
Length = 757
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 49/78 (62%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
DL G G V ++ FGAF+D G DGLVH+S LS+ FV+D +V G VKV+++
Sbjct: 636 DLQVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAGDVVKVKVL 695
Query: 204 EANAETGRISLTMRESDD 221
E +A RI+LTMR D+
Sbjct: 696 EVDAARKRIALTMRLDDE 713
Score = 37.0 bits (84), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 15/105 (14%)
Query: 247 KPGQK-RDEMKTTKFVKG----------QDLEGTVKNLTRSGAFISLPEGEEGFLPTSEE 295
KPG+ R E +T F +G LEG V N+ GAF+ + ++G + S
Sbjct: 613 KPGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDIGVHQDGLVHISAL 672
Query: 296 SDDGFANMMGGSSLQVGQEVSVRVLRI--SRGQVTLTMKKEDDVG 338
S+ + ++ G V V+VL + +R ++ LTM+ +D+ G
Sbjct: 673 SNKFVQDPR--EVVKAGDVVKVKVLEVDAARKRIALTMRLDDEPG 715
>sp|Q7A5J0|RS1_STAAN 30S ribosomal protein S1 OS=Staphylococcus aureus (strain N315)
GN=rpsA PE=1 SV=1
Length = 391
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 111/242 (45%), Gaps = 41/242 (16%)
Query: 100 ASDIPSDVETSESSSIKSEASPTLAESRR---SRTARKSEMPPVKNEDLI----PGATFT 152
++D D + +I+ + E+ R SR A + E K + L+ G
Sbjct: 139 STDFIEDFSVFDGQTIRIKVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIH 198
Query: 153 GKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRI 212
GKV + FGAFID G DGLVHVS LS V+ +VS+GQ+VKV++ + +T RI
Sbjct: 199 GKVARLTQFGAFIDIGG-VDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERI 257
Query: 213 SLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKN 272
SL+++ D + T + GQ F + +EG V
Sbjct: 258 SLSIK------------------DTLPTPFENIK--GQ---------FHENDVIEGVVVR 288
Query: 273 LTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLT 330
L GAF+ + G +G + SE + G L+ GQ+V+V++L I +V+L+
Sbjct: 289 LANFGAFVEIAPGVQGLVHISEIAHKHIGT--PGEVLEPGQQVNVKILGIDEENERVSLS 346
Query: 331 MK 332
+K
Sbjct: 347 IK 348
>sp|Q99U14|RS1_STAAM 30S ribosomal protein S1 OS=Staphylococcus aureus (strain Mu50 /
ATCC 700699) GN=rpsA PE=1 SV=1
Length = 391
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 111/242 (45%), Gaps = 41/242 (16%)
Query: 100 ASDIPSDVETSESSSIKSEASPTLAESRR---SRTARKSEMPPVKNEDLI----PGATFT 152
++D D + +I+ + E+ R SR A + E K + L+ G
Sbjct: 139 STDFIEDFSVFDGQTIRIKVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIH 198
Query: 153 GKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRI 212
GKV + FGAFID G DGLVHVS LS V+ +VS+GQ+VKV++ + +T RI
Sbjct: 199 GKVARLTQFGAFIDIGG-VDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERI 257
Query: 213 SLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKN 272
SL+++ D + T + GQ F + +EG V
Sbjct: 258 SLSIK------------------DTLPTPFENIK--GQ---------FHENDVIEGVVVR 288
Query: 273 LTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLT 330
L GAF+ + G +G + SE + G L+ GQ+V+V++L I +V+L+
Sbjct: 289 LANFGAFVEIAPGVQGLVHISEIAHKHIGT--PGEVLEPGQQVNVKILGIDEENERVSLS 346
Query: 331 MK 332
+K
Sbjct: 347 IK 348
>sp|Q8NWM8|RS1_STAAW 30S ribosomal protein S1 OS=Staphylococcus aureus (strain MW2)
GN=rpsA PE=3 SV=1
Length = 391
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 111/242 (45%), Gaps = 41/242 (16%)
Query: 100 ASDIPSDVETSESSSIKSEASPTLAESRR---SRTARKSEMPPVKNEDLI----PGATFT 152
++D D + +I+ + E+ R SR A + E K + L+ G
Sbjct: 139 STDFIEDFSVFDGQTIRIKVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDVID 198
Query: 153 GKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRI 212
GKV + FGAFID G DGLVHVS LS V+ +VS+GQ+VKV++ + +T RI
Sbjct: 199 GKVARLTQFGAFIDIGG-VDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERI 257
Query: 213 SLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKN 272
SL+++ D + T + GQ F + +EG V
Sbjct: 258 SLSIK------------------DTLPTPFENIK--GQ---------FHENDVIEGVVVR 288
Query: 273 LTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLT 330
L GAF+ + G +G + SE + G L+ GQ+V+V++L I +V+L+
Sbjct: 289 LANFGAFVEIAPGVQGLVHISEIAHKHIGT--PGEVLEPGQQVNVKILGIDEENERVSLS 346
Query: 331 MK 332
+K
Sbjct: 347 IK 348
>sp|Q6G987|RS1_STAAS 30S ribosomal protein S1 OS=Staphylococcus aureus (strain MSSA476)
GN=rpsA PE=3 SV=1
Length = 391
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 111/242 (45%), Gaps = 41/242 (16%)
Query: 100 ASDIPSDVETSESSSIKSEASPTLAESRR---SRTARKSEMPPVKNEDLI----PGATFT 152
++D D + +I+ + E+ R SR A + E K + L+ G
Sbjct: 139 STDFIEDFSVFDGQTIRIKVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDVID 198
Query: 153 GKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRI 212
GKV + FGAFID G DGLVHVS LS V+ +VS+GQ+VKV++ + +T RI
Sbjct: 199 GKVARLTQFGAFIDIGG-VDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERI 257
Query: 213 SLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKN 272
SL+++ D + T + GQ F + +EG V
Sbjct: 258 SLSIK------------------DTLPTPFENIK--GQ---------FHENDVIEGVVVR 288
Query: 273 LTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLT 330
L GAF+ + G +G + SE + G L+ GQ+V+V++L I +V+L+
Sbjct: 289 LANFGAFVEIAPGVQGLVHISEIAHKHIGT--PGEVLEPGQQVNVKILGIDEENERVSLS 346
Query: 331 MK 332
+K
Sbjct: 347 IK 348
>sp|Q5HFU7|RS1_STAAC 30S ribosomal protein S1 OS=Staphylococcus aureus (strain COL)
GN=rpsA PE=3 SV=1
Length = 391
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 111/242 (45%), Gaps = 41/242 (16%)
Query: 100 ASDIPSDVETSESSSIKSEASPTLAESRR---SRTARKSEMPPVKNEDLI----PGATFT 152
++D D + +I+ + E+ R SR A + E K + L+ G
Sbjct: 139 STDFIEDFSVFDGQTIRIKVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDVID 198
Query: 153 GKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRI 212
GKV + FGAFID G DGLVHVS LS V+ +VS+GQ+VKV++ + +T RI
Sbjct: 199 GKVARLTQFGAFIDIGG-VDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERI 257
Query: 213 SLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKN 272
SL+++ D + T + GQ F + +EG V
Sbjct: 258 SLSIK------------------DTLPTPFENIK--GQ---------FHENDVIEGVVVR 288
Query: 273 LTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLT 330
L GAF+ + G +G + SE + G L+ GQ+V+V++L I +V+L+
Sbjct: 289 LANFGAFVEIAPGVQGLVHISEIAHKHIGT--PGEVLEPGQQVNVKILGIDEENERVSLS 346
Query: 331 MK 332
+K
Sbjct: 347 IK 348
>sp|P80870|GS13_BACSU General stress protein 13 OS=Bacillus subtilis (strain 168) GN=yugI
PE=1 SV=3
Length = 130
Score = 73.6 bits (179), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 49/70 (70%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G+ +TGKV +Q +GAF+ T GLVH+S ++ FVKD+ +SVG EV+V+++ +
Sbjct: 8 GSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDE 67
Query: 208 ETGRISLTMR 217
E G+ISL++R
Sbjct: 68 EKGKISLSIR 77
Score = 38.5 bits (88), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 259 KFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVR 318
KF G G V L GAF++L E +G + SE + GF + L VG EV V+
Sbjct: 4 KFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVT-HGFVKDI-NEHLSVGDEVQVK 61
Query: 319 VLRI--SRGQVTLTMK 332
VL + +G+++L+++
Sbjct: 62 VLAVDEEKGKISLSIR 77
>sp|O06000|RS1H_BACC1 30S ribosomal protein S1 homolog OS=Bacillus cereus (strain ATCC
10987) GN=BCE_1625 PE=3 SV=1
Length = 382
Score = 72.8 bits (177), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 94/188 (50%), Gaps = 36/188 (19%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G G V+ + FGAF++ G DGLVH+S++S V+ ++ GQ+VKV+++ +A
Sbjct: 189 GDVVEGTVQRLTDFGAFVNVGG-VDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDA 247
Query: 208 ETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDL- 266
+T RISL+++ ++PG + VK D+
Sbjct: 248 DTQRISLSIK---------------------------AAQPGPWEN---IAGEVKAGDIR 277
Query: 267 EGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVL--RISR 324
EG VK L GAF+ + G EG + S+ ++ N L++GQEV V+VL ++
Sbjct: 278 EGIVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKN--PNEVLEMGQEVKVKVLEVHVAE 335
Query: 325 GQVTLTMK 332
+++L++K
Sbjct: 336 KRISLSIK 343
Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 70/119 (58%), Gaps = 4/119 (3%)
Query: 104 PSDVETSESSSIKSEASPTLAESRRSRTARKSEMP-PVKN--EDLIPGATFTGKVRSIQP 160
PS+V + +K + A+++R + K+ P P +N ++ G G V+ +
Sbjct: 228 PSEV-LEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENIAGEVKAGDIREGIVKRLVT 286
Query: 161 FGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRES 219
FGAF++ +GLVHVS++++ VK+ ++ +GQEVKV+++E + RISL+++E+
Sbjct: 287 FGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEA 345
Score = 40.8 bits (94), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 97/223 (43%), Gaps = 35/223 (15%)
Query: 100 ASDIPSDVETSESSSIKSEASPTLAESRRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQ 159
ASD+ + E IK E + L S+R+ A K+ + E G F V+ I
Sbjct: 58 ASDVVELDQILELKIIKLEEND-LVLSKRAVDAEKAWIEL--QEKFTSGHVFDVTVKDIV 114
Query: 160 PFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRES 219
G +D G G + S + ++V+D G+ + V+++E + E R+ L+ +
Sbjct: 115 NGGLVVDLG--VRGFIPASLVEVHYVEDFTD--YKGKTLAVKIVELDREKNRVILSHKAV 170
Query: 220 DDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAF 279
++ ++K+A +S +G +EGTV+ LT GAF
Sbjct: 171 VELELDSKKKEAISS-------------------------LKEGDVVEGTVQRLTDFGAF 205
Query: 280 ISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
+++ G +G + S+ S + L+ GQ+V V+VL +
Sbjct: 206 VNVG-GVDGLVHISQISHERVEQ--PSEVLEQGQKVKVKVLSV 245
Score = 33.9 bits (76), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 64/150 (42%), Gaps = 32/150 (21%)
Query: 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203
+L G TG V ++ ++ G TDG++ +S L++ ++ +V + Q +++++I
Sbjct: 14 ELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVELDQILELKII 73
Query: 204 EANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKG 263
+ E +D+ ++ DA + +++ KF G
Sbjct: 74 KL------------EENDLVLSKRAVDAEKAWIELQ------------------EKFTSG 103
Query: 264 QDLEGTVKNLTRSGAFISLPEGEEGFLPTS 293
+ TVK++ G + L G GF+P S
Sbjct: 104 HVFDVTVKDIVNGGLVVDL--GVRGFIPAS 131
>sp|Q89AJ3|RS1_BUCBP 30S ribosomal protein S1 OS=Buchnera aphidicola subsp. Baizongia
pistaciae (strain Bp) GN=rpsA PE=3 SV=2
Length = 566
Score = 72.8 bits (177), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 100/210 (47%), Gaps = 38/210 (18%)
Query: 130 RTARKSEMPPVKN---EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVK 186
R +SE +N E L G +G V+++ +GAF+D G DGL+H++ ++ VK
Sbjct: 171 RAVIESEYNAERNLLLETLQEGLIVSGIVKNLTDYGAFVDLGG-VDGLLHITDMAWKRVK 229
Query: 187 DVGSIVSVGQEVKVRLIEANAETGRISLTMRE-SDDISKLQQQKDATASGDKVRTTRRST 245
IV++G EVK+++++ + E R+SL +++ SDD
Sbjct: 230 HPSEIVNIGDEVKIKILKFDREKIRVSLGLKQLSDD------------------------ 265
Query: 246 SKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMG 305
P K E ++ + + G V NLT G F+ + EG EG + S E D N+
Sbjct: 266 --PWTKISE----RYPEKTKITGRVTNLTDYGCFVEIEEGVEGLVHVS-EMDWTNKNIHP 318
Query: 306 GSSLQVGQEVSVRVLRIS--RGQVTLTMKK 333
+QV V V +L I R +++L +K+
Sbjct: 319 SKMVQVNSVVKVMILDIDEERRRISLGLKQ 348
Score = 42.4 bits (98), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 41/156 (26%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNF-----VKDVGSIVSVGQEVKVRL 202
G+ GK++SI FG FI DGLVH+S +S N VK G+EV +
Sbjct: 364 GSHVVGKIKSITDFGIFIGLEGSIDGLVHLSDISWNISGEESVKKYKK----GEEVLAVV 419
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
++ + + RISL ++ Q Q+D A K ++ + K
Sbjct: 420 LQVDPDRERISLGIK--------QLQEDPFA---KYVSSHK------------------K 450
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEG---FLPTSEE 295
G + GT+K + + +SL E +G FL S+E
Sbjct: 451 GSLVSGTIKKIDNNVIVVSLSEHIDGLIKFLNISDE 486
>sp|Q4L6I1|RS1_STAHJ 30S ribosomal protein S1 OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=rpsA PE=3 SV=1
Length = 392
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 101/211 (47%), Gaps = 42/211 (19%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQE--VKV 200
E L G GKV + FGAF+D G DGLVHVS LS V +VSVGQE VKV
Sbjct: 189 ESLNAGDVIKGKVARLTNFGAFVDIGG-VDGLVHVSELSHEHVDSPEDVVSVGQEVDVKV 247
Query: 201 RLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKF 260
+ +E +AE RISL+++ D + T S GQ F
Sbjct: 248 KSVEKDAE--RISLSIK------------------DTLPTPFESIK--GQ---------F 276
Query: 261 VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVL 320
+ +EG V L GAF+ + G +G + SE + + G L+ GQ+V+V++L
Sbjct: 277 HEDDVIEGKVVRLANFGAFVEIAPGVQGLVHISEIAHEHIGT--PGEKLEPGQQVNVKIL 334
Query: 321 RIS--RGQVTLTMK----KEDDVGSNLQLTQ 345
I +++L++K KED V S+ TQ
Sbjct: 335 GIDEENERISLSIKATLPKEDVVESDDATTQ 365
>sp|O31489|YDCI_BACSU Uncharacterized protein YdcI OS=Bacillus subtilis (strain 168)
GN=ydcI PE=4 SV=2
Length = 719
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 47/74 (63%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
EDL G G VR++ FGAF+D G DGLVH+S+LS+ FVK +VSVG V V +
Sbjct: 644 EDLKEGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSNQFVKHPLDVVSVGDIVTVWV 703
Query: 203 IEANAETGRISLTM 216
+ + GR+SL+M
Sbjct: 704 DGVDVQKGRVSLSM 717
Score = 41.6 bits (96), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Query: 239 RTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD 298
R R KP K D ++ +G +L+GTV+N+ GAF+ + ++G + S+ S+
Sbjct: 625 RDPRDKVPKPLLKTDVLQLEDLKEGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSNQ 684
Query: 299 GFANMMGGSSLQVGQEVSVRV--LRISRGQVTLTMKK 333
+ + S VG V+V V + + +G+V+L+M K
Sbjct: 685 FVKHPLDVVS--VGDIVTVWVDGVDVQKGRVSLSMVK 719
>sp|Q2RMR6|PNP_RHORT Polyribonucleotide nucleotidyltransferase OS=Rhodospirillum rubrum
(strain ATCC 11170 / NCIB 8255) GN=pnp PE=3 SV=1
Length = 708
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G +TGKV I FGAF++F DGLVH+S LS + VK VG +V+VG +VKV+ + +
Sbjct: 622 GVVYTGKVVKIMDFGAFVNFLGTRDGLVHISELSQDRVKKVGDVVNVGDQVKVKCVGFD- 680
Query: 208 ETGRISLTMRESDDIS 223
+ G+I L+M++ D ++
Sbjct: 681 DRGKIKLSMKQVDQVT 696
>sp|Q49XT0|RS1_STAS1 30S ribosomal protein S1 OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=rpsA
PE=3 SV=1
Length = 393
Score = 70.1 bits (170), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 93/194 (47%), Gaps = 38/194 (19%)
Query: 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202
E L G GKV + FGAF+D G DGLVHVS LS VK +VS+G+ V V++
Sbjct: 189 ESLNEGDVIEGKVARLTNFGAFVDIGG-VDGLVHVSELSHEHVKSPEDVVSIGETVNVKI 247
Query: 203 IEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVK 262
+ ++ RISL+++ D + + S +F +
Sbjct: 248 KSVDKDSERISLSIK------------------DTLPSPFESIK-----------GEFNE 278
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSS--LQVGQEVSVRVL 320
G +EGTV L GAF+ + G +G + SE S + +G S L+ GQ VSV+VL
Sbjct: 279 GDVIEGTVVRLANFGAFVEIKPGVQGLVHISEIS----HSHIGSPSEALEPGQVVSVKVL 334
Query: 321 --RISRGQVTLTMK 332
+ +++L++K
Sbjct: 335 GVDVENERISLSIK 348
>sp|B8G3Z1|PNP_CHLAD Polyribonucleotide nucleotidyltransferase OS=Chloroflexus aggregans
(strain MD-66 / DSM 9485) GN=pnp PE=3 SV=1
Length = 755
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 48/70 (68%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G F GKV SI+PFGAF++ DG+VHVS L + V++V +VS+G E+ V +I+ +
Sbjct: 629 GDIFLGKVVSIKPFGAFVNILPGKDGMVHVSELDEKRVENVEDVVSLGDEINVMVIDIDR 688
Query: 208 ETGRISLTMR 217
TG+ISL+ R
Sbjct: 689 NTGKISLSRR 698
>sp|B9LH03|PNP_CHLSY Polyribonucleotide nucleotidyltransferase OS=Chloroflexus
aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl)
GN=pnp PE=3 SV=1
Length = 755
Score = 67.8 bits (164), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 48/70 (68%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G F GKV SI+PFGAF++ DG+VHVS L + V++V +VS+G E+ V +I+ +
Sbjct: 629 GDIFLGKVVSIKPFGAFVNILPGKDGMVHVSELDEKRVENVEDVVSLGDEINVMVIDIDR 688
Query: 208 ETGRISLTMR 217
TG+ISL+ R
Sbjct: 689 TTGKISLSRR 698
>sp|A9WEJ7|PNP_CHLAA Polyribonucleotide nucleotidyltransferase OS=Chloroflexus
aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)
GN=pnp PE=3 SV=1
Length = 755
Score = 67.8 bits (164), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 48/70 (68%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G F GKV SI+PFGAF++ DG+VHVS L + V++V +VS+G E+ V +I+ +
Sbjct: 629 GDIFLGKVVSIKPFGAFVNILPGKDGMVHVSELDEKRVENVEDVVSLGDEINVMVIDIDR 688
Query: 208 ETGRISLTMR 217
TG+ISL+ R
Sbjct: 689 TTGKISLSRR 698
>sp|P38016|RS1_CHLMU 30S ribosomal protein S1 OS=Chlamydia muridarum (strain MoPn /
Nigg) GN=rpsA PE=3 SV=2
Length = 570
Score = 66.6 bits (161), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 105/250 (42%), Gaps = 69/250 (27%)
Query: 147 PGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDV---GSIVSVGQEVKVRLI 203
PG GK+ + P+GAFI+ +GL+HVS +S +VK++ +V+ G EV+V ++
Sbjct: 304 PGKRVRGKIVKLLPYGAFIEIEEGIEGLIHVSEMS--WVKNIVDPNEVVNKGDEVEVVVL 361
Query: 204 EANAETGRISLTMRESDD------------------------------------------ 221
+ G+ISL +++++
Sbjct: 362 SIQKDEGKISLGLKQTEHNPWDNIEEKYPIGLRVTAEIKNLTNYGAFVELEPGIEGLIHI 421
Query: 222 -----ISKLQQQKDATASGDKVRTTRRSTSKPGQK------------RDEMKTTKFVKGQ 264
I K+ + G+ V S K +K DE++ F G
Sbjct: 422 SDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEIEAM-FPVGS 480
Query: 265 DLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI-- 322
D+ G V +T GAF+ L G EG + S+ SD FA + L +G +VS +V+++
Sbjct: 481 DISGIVTKITAFGAFVELQNGIEGLIHVSKLSDKPFAKIE--DILSIGDKVSAKVIKLDP 538
Query: 323 SRGQVTLTMK 332
+V+L++K
Sbjct: 539 DHKKVSLSIK 548
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 100/216 (46%), Gaps = 44/216 (20%)
Query: 126 SRRS-----RTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRL 180
SRR R ++K+E+ E + G G V++I FG F+D DGL+H++ +
Sbjct: 197 SRRELLEAERISKKAELI----EQITIGERRKGIVKNITDFGVFLDLDGI-DGLLHITDM 251
Query: 181 SDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRT 240
+ ++ +V + QE++V ++ + E GR++L ++ Q++ + +K
Sbjct: 252 TWKRIRHPSEMVELNQELEVIILSVDKEKGRVALGLK--------QKEHNPWEDIEK--- 300
Query: 241 TRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGF 300
K+ G+ + G + L GAFI + EG EG + SE S
Sbjct: 301 ------------------KYPPGKRVRGKIVKLLPYGAFIEIEEGIEGLIHVSEMS--WV 340
Query: 301 ANMMG-GSSLQVGQEVSVRVLRISR--GQVTLTMKK 333
N++ + G EV V VL I + G+++L +K+
Sbjct: 341 KNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQ 376
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 45/71 (63%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G+ +G V I FGAF++ +GL+HVS+LSD + I+S+G +V ++I+ +
Sbjct: 479 GSDISGIVTKITAFGAFVELQNGIEGLIHVSKLSDKPFAKIEDILSIGDKVSAKVIKLDP 538
Query: 208 ETGRISLTMRE 218
+ ++SL+++E
Sbjct: 539 DHKKVSLSIKE 549
Score = 33.5 bits (75), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 72/177 (40%), Gaps = 39/177 (22%)
Query: 147 PGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEAN 206
PGA G V I +D G ++G++ +S D+ +SVG EV+V L +
Sbjct: 51 PGAILKGTVVDISKDFVVVDVGLKSEGVIPMSEFIDS-----SEGLSVGAEVEVYLDQTE 105
Query: 207 AETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDL 266
E G++ L+ RE + TR Q++ E +G +
Sbjct: 106 DEEGKVVLS-RE--------------------KATR-------QRQWEYILAHCEEGSIV 137
Query: 267 EGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRIS 323
+G + + G + + G E FLP S+ + N+ VG+ ++L+I+
Sbjct: 138 KGQITRKVKGGLIVDI--GMEAFLPGSQIDNKKIKNL----DDYVGKVCEFKILKIN 188
>sp|Q8Y7F1|PNP_LISMO Polyribonucleotide nucleotidyltransferase OS=Listeria monocytogenes
serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=pnp PE=3
SV=1
Length = 723
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G +TGKVR I+ FGAF++ TDGLVH+S L+ V V I+ +G EV V++IE +
Sbjct: 624 GEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHERVGKVEDILKLGDEVTVKVIEVD- 682
Query: 208 ETGRISLTMR 217
+ GR++L+ +
Sbjct: 683 QQGRVNLSRK 692
>sp|B8DFZ6|PNP_LISMH Polyribonucleotide nucleotidyltransferase OS=Listeria monocytogenes
serotype 4a (strain HCC23) GN=pnp PE=3 SV=1
Length = 723
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G +TGKVR I+ FGAF++ TDGLVH+S L+ V V I+ +G EV V++IE +
Sbjct: 624 GEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHERVGKVEDILKLGDEVTVKVIEVD- 682
Query: 208 ETGRISLTMR 217
+ GR++L+ +
Sbjct: 683 QQGRVNLSRK 692
>sp|Q92C23|PNP_LISIN Polyribonucleotide nucleotidyltransferase OS=Listeria innocua
serovar 6a (strain CLIP 11262) GN=pnp PE=3 SV=1
Length = 723
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G +TGKVR I+ FGAF++ TDGLVH+S L+ V V I+ +G EV V++IE +
Sbjct: 624 GEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHERVGKVEDILKLGDEVTVKVIEVDH 683
Query: 208 ETGRISLTMR 217
+ GR++L+ +
Sbjct: 684 Q-GRVNLSRK 692
>sp|Q71ZZ1|PNP_LISMF Polyribonucleotide nucleotidyltransferase OS=Listeria monocytogenes
serotype 4b (strain F2365) GN=pnp PE=3 SV=1
Length = 723
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G +TGKVR I+ FGAF++ TDGLVH+S L+ V V I+ +G EV V++IE +
Sbjct: 624 GEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHERVGKVEDILKLGDEVTVKVIEVD- 682
Query: 208 ETGRISLTMR 217
+ GR++L+ +
Sbjct: 683 QQGRVNLSRK 692
>sp|C1L2N7|PNP_LISMC Polyribonucleotide nucleotidyltransferase OS=Listeria monocytogenes
serotype 4b (strain CLIP80459) GN=pnp PE=3 SV=1
Length = 723
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G +TGKVR I+ FGAF++ TDGLVH+S L+ V V I+ +G EV V++IE +
Sbjct: 624 GEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHERVGKVEDILKLGDEVTVKVIEVD- 682
Query: 208 ETGRISLTMR 217
+ GR++L+ +
Sbjct: 683 QQGRVNLSRK 692
>sp|A0AID2|PNP_LISW6 Polyribonucleotide nucleotidyltransferase OS=Listeria welshimeri
serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334)
GN=pnp PE=3 SV=1
Length = 723
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G +TGKVR I+ FGAF++ TDGLVH+S L+ V V I+ +G EV V++IE +
Sbjct: 624 GEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHERVGKVEDILKLGDEVTVKVIEVDH 683
Query: 208 ETGRISLTMR 217
+ GR++L+ +
Sbjct: 684 Q-GRVNLSRK 692
>sp|Q65VB0|PNP_MANSM Polyribonucleotide nucleotidyltransferase OS=Mannheimia
succiniciproducens (strain MBEL55E) GN=pnp PE=3 SV=1
Length = 704
Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
GA +TGKV + FGAF+ +GLVH+S++++ V+ V + VGQEV+V+++E +
Sbjct: 621 GAVYTGKVTRLADFGAFVAIVGNKEGLVHISQIAEERVEKVSDYLQVGQEVQVKVVEIDR 680
Query: 208 ETGRISLTMRE 218
+ GRI LTMR+
Sbjct: 681 Q-GRIRLTMRD 690
Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 14/113 (12%)
Query: 229 KDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEG 288
K A G+ V+T R E T + G G V L GAF+++ +EG
Sbjct: 595 KIAAVDGNAVKTV--------MARIEDITAEVEAGAVYTGKVTRLADFGAFVAIVGNKEG 646
Query: 289 FLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISR-GQVTLTMKKEDDVGSN 340
+ S+ +++ + LQVGQEV V+V+ I R G++ LTM+ D+GS
Sbjct: 647 LVHISQIAEERVEKV--SDYLQVGQEVQVKVVEIDRQGRIRLTMR---DLGSK 694
>sp|A7H9F8|PNP_ANADF Polyribonucleotide nucleotidyltransferase OS=Anaeromyxobacter sp.
(strain Fw109-5) GN=pnp PE=3 SV=1
Length = 722
Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G T+ G VR I FGAF++ TDGL+H+S LSD VK V ++S G+EV V++I +
Sbjct: 631 GKTYLGTVRKIAEFGAFVELFPGTDGLIHISELSDKRVKSVSDVLSEGEEVLVKVISVD- 689
Query: 208 ETGRISLTMRES 219
G+I L+ +E+
Sbjct: 690 RAGKIRLSRKEA 701
Score = 37.0 bits (84), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G+ GTV+ + GAF+ L G +G + SE SD ++ L G+EV V+V+ +
Sbjct: 631 GKTYLGTVRKIAEFGAFVELFPGTDGLIHISELSDKRVKSV--SDVLSEGEEVLVKVISV 688
Query: 323 SR-GQVTLTMK 332
R G++ L+ K
Sbjct: 689 DRAGKIRLSRK 699
>sp|P29344|RR1_SPIOL 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea
GN=RPS1 PE=1 SV=1
Length = 411
Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 50/71 (70%), Gaps = 1/71 (1%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G+ TG V+S++P+GAFID G +GL+HVS++S + V D+ +++ G +KV ++ +
Sbjct: 261 GSVVTGTVQSLKPYGAFIDIGGI-NGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDR 319
Query: 208 ETGRISLTMRE 218
E GR+SL+ ++
Sbjct: 320 ERGRVSLSTKK 330
>sp|Q5NQ32|PNP_ZYMMO Polyribonucleotide nucleotidyltransferase OS=Zymomonas mobilis
subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN=pnp
PE=3 SV=1
Length = 748
Score = 63.5 bits (153), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G + GKV +I FGAF++F DGLVHVS + + V V ++S GQEVKV+++E +
Sbjct: 620 GKIYNGKVVNIVDFGAFVNFMGGRDGLVHVSEIKNERVNKVSDVLSEGQEVKVKVLEID- 678
Query: 208 ETGRISLTMRESD 220
G++ L+MR D
Sbjct: 679 NRGKVRLSMRVVD 691
>sp|B4F2C3|PNP_PROMH Polyribonucleotide nucleotidyltransferase OS=Proteus mirabilis
(strain HI4320) GN=pnp PE=3 SV=1
Length = 709
Score = 63.5 bits (153), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G + GKV I FGAF+ G +GLVH+S+++D V+ V +++GQEV V+++E +
Sbjct: 622 GRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVSDYLTMGQEVPVKVLEIDR 681
Query: 208 ETGRISLTMRESDDISKLQQQKDATASGD 236
+ GRI L+M+E+ QQ+ T+S D
Sbjct: 682 Q-GRIRLSMKEA---QATQQEAAETSSED 706
Score = 42.7 bits (99), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 237 KVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEES 296
K+ T +K R E T + G+ G V + GAF+++ G+EG + S+ +
Sbjct: 596 KIAATSGEQAKQAIARIEEITAEVEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIA 655
Query: 297 DDGFANMMGGSSLQVGQEVSVRVLRISR-GQVTLTMKK 333
D + L +GQEV V+VL I R G++ L+MK+
Sbjct: 656 DKRVEKV--SDYLTMGQEVPVKVLEIDRQGRIRLSMKE 691
>sp|A5VCY9|PNP_SPHWW Polyribonucleotide nucleotidyltransferase OS=Sphingomonas wittichii
(strain RW1 / DSM 6014 / JCM 10273) GN=pnp PE=3 SV=1
Length = 774
Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G +TGKV ++ FGAF++F DGLVHVS + + V+ V +S GQEVKV+++E +
Sbjct: 621 GKIYTGKVVNLVDFGAFVNFMGGKDGLVHVSEIKNERVEKVADALSEGQEVKVKVLEID- 679
Query: 208 ETGRISLTMRESD 220
G++ L+MR D
Sbjct: 680 NRGKVRLSMRVVD 692
>sp|A5FVG2|PNP_ACICJ Polyribonucleotide nucleotidyltransferase OS=Acidiphilium cryptum
(strain JF-5) GN=pnp PE=3 SV=1
Length = 717
Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G +TGKV I FGAF++F DGLVH+S L+ V G +V VG VKV++I +
Sbjct: 623 GQIYTGKVVKIADFGAFVNFFGARDGLVHISELAQGRVARTGDVVKVGDTVKVKMIGLD- 681
Query: 208 ETGRISLTMRESD 220
+ G++ L+MR D
Sbjct: 682 DRGKVKLSMRVVD 694
>sp|Q67P77|PNP_SYMTH Polyribonucleotide nucleotidyltransferase OS=Symbiobacterium
thermophilum (strain T / IAM 14863) GN=pnp PE=3 SV=1
Length = 762
Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 61/106 (57%), Gaps = 8/106 (7%)
Query: 147 PGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEAN 206
PG +TG+V + FGAF++ +GLVH+S LSD V V +V++G EV V++ E +
Sbjct: 642 PGMIYTGRVTRLMQFGAFVEILPGKEGLVHISELSDKRVARVEDVVNIGDEVTVKVTEID 701
Query: 207 AETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKR 252
GRI+L+++++ + +Q + SG R+ KPGQ +
Sbjct: 702 -RLGRINLSIKDA-----MPKQAASQPSGRP--EARQPQPKPGQGK 739
Score = 38.9 bits (89), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 263 GQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322
G G V L + GAF+ + G+EG + SE SD A + + +G EV+V+V I
Sbjct: 643 GMIYTGRVTRLMQFGAFVEILPGKEGLVHISELSDKRVARVE--DVVNIGDEVTVKVTEI 700
Query: 323 SR-GQVTLTMK 332
R G++ L++K
Sbjct: 701 DRLGRINLSIK 711
>sp|Q482T5|PNP_COLP3 Polyribonucleotide nucleotidyltransferase OS=Colwellia
psychrerythraea (strain 34H / ATCC BAA-681) GN=pnp PE=3
SV=1
Length = 705
Score = 63.2 bits (152), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G +TGKV I FGAF++ DGLVH+S++S+ V +V +++ GQEVKV+++E +
Sbjct: 622 GTLYTGKVVRIVDFGAFVNVLPGKDGLVHISQISEERVNNVSEVLTEGQEVKVKVLEVDR 681
Query: 208 ETGRISLTMRES 219
+ GR+ L+++E+
Sbjct: 682 Q-GRVRLSIKEA 692
>sp|A9B8G1|PNP_HERA2 Polyribonucleotide nucleotidyltransferase OS=Herpetosiphon
aurantiacus (strain ATCC 23779 / DSM 785) GN=pnp PE=3
SV=1
Length = 777
Score = 63.2 bits (152), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G FTGKV I P+GAF++ DG+VHVS L + V++V +V +G E+ V +I+
Sbjct: 630 GEIFTGKVVRIMPYGAFVNVLPGKDGMVHVSELDEKRVENVEDVVKIGDELTVMVIDVEP 689
Query: 208 ETGRISLTMR 217
TG++SL+ R
Sbjct: 690 GTGKLSLSRR 699
>sp|Q31W43|PNP_SHIBS Polyribonucleotide nucleotidyltransferase OS=Shigella boydii
serotype 4 (strain Sb227) GN=pnp PE=3 SV=2
Length = 711
Score = 62.8 bits (151), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G +TGKV I FGAF+ G +GLVH+S+++D V+ V + +GQEV V+++E +
Sbjct: 622 GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR 681
Query: 208 ETGRISLTMRES 219
+ GRI L+++E+
Sbjct: 682 Q-GRIRLSIKEA 692
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 237 KVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEES 296
K+ T +K +R E T + G+ G V + GAF+++ G+EG + S+ +
Sbjct: 596 KIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIA 655
Query: 297 DDGFANMMGGSSLQVGQEVSVRVLRISR-GQVTLTMKK 333
D + LQ+GQEV V+VL + R G++ L++K+
Sbjct: 656 DKRVEKVT--DYLQMGQEVPVKVLEVDRQGRIRLSIKE 691
>sp|P73530|RS1A_SYNY3 30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rps1A PE=3 SV=1
Length = 328
Score = 62.8 bits (151), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 152 TGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGR 211
G VR I+P+GAFID G + GL+H+S +S + + S+ +V E+KV +I+ +AE GR
Sbjct: 200 VGSVRGIKPYGAFIDIGGVS-GLLHISEISHDHIDTPHSVFNVNDEIKVMIIDLDAERGR 258
Query: 212 ISLTMRE 218
ISL+ ++
Sbjct: 259 ISLSTKQ 265
Score = 37.7 bits (86), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 50/103 (48%)
Query: 147 PGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEAN 206
PG G V S++ GA ID GA T + + +S N V D ++ + + ++
Sbjct: 30 PGDIVAGTVFSMESRGALIDIGAKTAAYIPIQEMSINRVDDPEEVLQPNETREFFILTDE 89
Query: 207 AETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPG 249
E G+++L++R + + ++ + A VR+ +T++ G
Sbjct: 90 NEDGQLTLSIRRIEYMRAWERVRQLQAEDATVRSNVFATNRGG 132
>sp|Q83JG0|PNP_SHIFL Polyribonucleotide nucleotidyltransferase OS=Shigella flexneri
GN=pnp PE=3 SV=5
Length = 711
Score = 62.8 bits (151), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G +TGKV I FGAF+ G +GLVH+S+++D V+ V + +GQEV V+++E +
Sbjct: 622 GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR 681
Query: 208 ETGRISLTMRES 219
+ GRI L+++E+
Sbjct: 682 Q-GRIRLSIKEA 692
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 237 KVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEES 296
K+ T +K +R E T + G+ G V + GAF+++ G+EG + S+ +
Sbjct: 596 KIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIA 655
Query: 297 DDGFANMMGGSSLQVGQEVSVRVLRISR-GQVTLTMKK 333
D + LQ+GQEV V+VL + R G++ L++K+
Sbjct: 656 DKRVEKVT--DYLQMGQEVPVKVLEVDRQGRIRLSIKE 691
>sp|Q0T0B7|PNP_SHIF8 Polyribonucleotide nucleotidyltransferase OS=Shigella flexneri
serotype 5b (strain 8401) GN=pnp PE=3 SV=1
Length = 711
Score = 62.8 bits (151), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G +TGKV I FGAF+ G +GLVH+S+++D V+ V + +GQEV V+++E +
Sbjct: 622 GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR 681
Query: 208 ETGRISLTMRES 219
+ GRI L+++E+
Sbjct: 682 Q-GRIRLSIKEA 692
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 237 KVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEES 296
K+ T +K +R E T + G+ G V + GAF+++ G+EG + S+ +
Sbjct: 596 KIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIA 655
Query: 297 DDGFANMMGGSSLQVGQEVSVRVLRISR-GQVTLTMKK 333
D + LQ+GQEV V+VL + R G++ L++K+
Sbjct: 656 DKRVEKVT--DYLQMGQEVPVKVLEVDRQGRIRLSIKE 691
>sp|B1IQV7|PNP_ECOLC Polyribonucleotide nucleotidyltransferase OS=Escherichia coli
(strain ATCC 8739 / DSM 1576 / Crooks) GN=pnp PE=3 SV=1
Length = 711
Score = 62.8 bits (151), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G +TGKV I FGAF+ G +GLVH+S+++D V+ V + +GQEV V+++E +
Sbjct: 622 GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR 681
Query: 208 ETGRISLTMRES 219
+ GRI L+++E+
Sbjct: 682 Q-GRIRLSIKEA 692
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 237 KVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEES 296
K+ T +K +R E T + G+ G V + GAF+++ G+EG + S+ +
Sbjct: 596 KIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIA 655
Query: 297 DDGFANMMGGSSLQVGQEVSVRVLRISR-GQVTLTMKK 333
D + LQ+GQEV V+VL + R G++ L++K+
Sbjct: 656 DKRVEKVT--DYLQMGQEVPVKVLEVDRQGRIRLSIKE 691
>sp|P05055|PNP_ECOLI Polyribonucleotide nucleotidyltransferase OS=Escherichia coli
(strain K12) GN=pnp PE=1 SV=3
Length = 711
Score = 62.8 bits (151), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G +TGKV I FGAF+ G +GLVH+S+++D V+ V + +GQEV V+++E +
Sbjct: 622 GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR 681
Query: 208 ETGRISLTMRES 219
+ GRI L+++E+
Sbjct: 682 Q-GRIRLSIKEA 692
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 237 KVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEES 296
K+ T +K +R E T + G+ G V + GAF+++ G+EG + S+ +
Sbjct: 596 KIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIA 655
Query: 297 DDGFANMMGGSSLQVGQEVSVRVLRISR-GQVTLTMKK 333
D + LQ+GQEV V+VL + R G++ L++K+
Sbjct: 656 DKRVEKVT--DYLQMGQEVPVKVLEVDRQGRIRLSIKE 691
>sp|A8A4Y0|PNP_ECOHS Polyribonucleotide nucleotidyltransferase OS=Escherichia coli O9:H4
(strain HS) GN=pnp PE=3 SV=1
Length = 711
Score = 62.8 bits (151), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Query: 148 GATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANA 207
G +TGKV I FGAF+ G +GLVH+S+++D V+ V + +GQEV V+++E +
Sbjct: 622 GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR 681
Query: 208 ETGRISLTMRES 219
+ GRI L+++E+
Sbjct: 682 Q-GRIRLSIKEA 692
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 237 KVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEES 296
K+ T +K +R E T + G+ G V + GAF+++ G+EG + S+ +
Sbjct: 596 KIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIA 655
Query: 297 DDGFANMMGGSSLQVGQEVSVRVLRISR-GQVTLTMKK 333
D + LQ+GQEV V+VL + R G++ L++K+
Sbjct: 656 DKRVEKVT--DYLQMGQEVPVKVLEVDRQGRIRLSIKE 691
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.306 0.124 0.328
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 237,210,824
Number of Sequences: 539616
Number of extensions: 10194462
Number of successful extensions: 31264
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 863
Number of HSP's that attempted gapping in prelim test: 27472
Number of HSP's gapped (non-prelim): 3992
length of query: 681
length of database: 191,569,459
effective HSP length: 124
effective length of query: 557
effective length of database: 124,657,075
effective search space: 69433990775
effective search space used: 69433990775
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 65 (29.6 bits)