Query 005707
Match_columns 681
No_of_seqs 284 out of 2114
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 05:10:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005707.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005707hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3go5_A Multidomain protein wit 100.0 1.4E-26 4.8E-31 240.6 25.9 199 44-340 19-223 (285)
2 3go5_A Multidomain protein wit 99.9 1.2E-24 4E-29 226.3 19.8 172 146-377 5-189 (285)
3 1kl9_A Eukaryotic translation 99.8 4.7E-21 1.6E-25 187.7 -5.7 124 145-299 13-139 (182)
4 1kl9_A Eukaryotic translation 99.6 1.1E-17 3.6E-22 163.9 -4.2 113 260-377 13-138 (182)
5 2a19_A EIF-2- alpha, eukaryoti 99.6 1.2E-16 4E-21 155.6 2.8 104 146-278 14-120 (175)
6 2khi_A 30S ribosomal protein S 99.6 5.5E-15 1.9E-19 134.0 11.7 85 255-341 23-110 (115)
7 1q8k_A Eukaryotic translation 99.6 2.3E-16 7.8E-21 165.7 1.2 111 142-281 8-121 (308)
8 2khj_A 30S ribosomal protein S 99.5 2.4E-14 8.3E-19 128.4 7.9 80 255-336 24-105 (109)
9 1luz_A Protein K3, protein K2; 99.5 3.1E-14 1.1E-18 124.0 8.2 80 140-221 4-86 (88)
10 2k4k_A GSP13, general stress p 99.5 6.6E-14 2.3E-18 129.8 9.8 82 143-224 3-84 (130)
11 2khi_A 30S ribosomal protein S 99.5 8.2E-14 2.8E-18 126.3 10.1 83 142-224 25-108 (115)
12 2eqs_A ATP-dependent RNA helic 99.5 5.7E-14 1.9E-18 125.2 8.9 83 256-340 6-92 (103)
13 3aev_A Translation initiation 99.5 3.8E-15 1.3E-19 154.3 1.3 109 144-281 8-119 (275)
14 2eqs_A ATP-dependent RNA helic 99.5 1.5E-13 5.1E-18 122.5 9.7 82 141-224 6-91 (103)
15 2k52_A Uncharacterized protein 99.4 4E-13 1.4E-17 114.2 11.0 74 144-221 2-75 (80)
16 2cqo_A Nucleolar protein of 40 99.4 6.7E-14 2.3E-18 128.1 6.5 83 142-224 17-102 (119)
17 2khj_A 30S ribosomal protein S 99.4 1.2E-13 4.3E-18 123.8 7.3 80 142-221 26-105 (109)
18 2k4k_A GSP13, general stress p 99.4 2.1E-13 7.1E-18 126.5 8.8 82 258-341 3-86 (130)
19 2cqo_A Nucleolar protein of 40 99.4 1.5E-13 5.2E-18 125.8 7.0 85 255-341 15-104 (119)
20 2k52_A Uncharacterized protein 99.4 9E-13 3.1E-17 112.0 10.2 72 259-336 2-75 (80)
21 2a19_A EIF-2- alpha, eukaryoti 99.4 4.4E-13 1.5E-17 130.5 9.3 96 259-357 11-120 (175)
22 1luz_A Protein K3, protein K2; 99.4 4.2E-13 1.4E-17 116.9 7.4 78 256-337 5-87 (88)
23 1q8k_A Eukaryotic translation 99.3 1.4E-13 4.9E-18 144.5 1.5 97 260-359 11-120 (308)
24 3cw2_C Translation initiation 99.3 3.9E-12 1.3E-16 131.1 6.7 85 141-225 5-91 (266)
25 1e3p_A Guanosine pentaphosphat 99.2 3.5E-13 1.2E-17 155.9 -4.5 134 145-341 607-749 (757)
26 3aev_A Translation initiation 99.2 2.1E-11 7.3E-16 126.3 8.6 96 261-359 10-118 (275)
27 1wi5_A RRP5 protein homolog; S 99.2 3.2E-11 1.1E-15 109.6 7.8 82 140-221 14-97 (119)
28 1wi5_A RRP5 protein homolog; S 99.1 7.3E-11 2.5E-15 107.3 7.6 79 255-335 14-96 (119)
29 3cdi_A Polynucleotide phosphor 99.1 6E-12 2E-16 145.1 0.0 83 257-341 622-705 (723)
30 3cw2_C Translation initiation 99.1 2.6E-11 9E-16 125.0 2.4 82 258-341 7-92 (266)
31 3psi_A Transcription elongatio 99.0 2.7E-10 9.2E-15 137.3 9.9 81 141-221 896-977 (1219)
32 1go3_E DNA-directed RNA polyme 99.0 6.5E-10 2.2E-14 108.1 10.0 79 142-221 76-170 (187)
33 4aid_A Polyribonucleotide nucl 99.0 3.1E-11 1.1E-15 139.0 0.1 84 255-340 630-714 (726)
34 4aid_A Polyribonucleotide nucl 99.0 3.5E-11 1.2E-15 138.6 0.0 82 142-224 632-713 (726)
35 3bzc_A TEX; helix-turn-helix, 99.0 1.4E-10 4.9E-15 134.6 4.4 80 140-219 647-726 (785)
36 2id0_A Exoribonuclease 2; RNAs 99.0 7.9E-11 2.7E-15 134.4 1.9 149 26-217 480-643 (644)
37 3cdi_A Polynucleotide phosphor 99.0 6.1E-11 2.1E-15 136.8 0.0 82 142-224 622-703 (723)
38 4ayb_E DNA-directed RNA polyme 99.0 2.3E-09 7.9E-14 103.7 10.5 77 142-219 76-167 (180)
39 1e3p_A Guanosine pentaphosphat 98.9 3.2E-11 1.1E-15 139.7 -3.1 82 143-225 663-748 (757)
40 3psi_A Transcription elongatio 98.9 1.4E-09 4.7E-14 131.3 10.4 79 256-335 896-976 (1219)
41 3psf_A Transcription elongatio 98.9 1.7E-10 5.7E-15 137.3 0.1 82 141-222 899-981 (1030)
42 2nn6_I 3'-5' exoribonuclease C 98.9 3E-09 1E-13 106.2 8.4 77 143-219 77-163 (209)
43 1go3_E DNA-directed RNA polyme 98.9 4.7E-09 1.6E-13 102.0 9.6 81 257-338 76-172 (187)
44 3bzc_A TEX; helix-turn-helix, 98.8 1.3E-09 4.5E-14 126.7 4.7 79 255-335 647-727 (785)
45 3m7n_A Putative uncharacterize 98.8 7.3E-09 2.5E-13 100.8 9.1 70 144-219 55-134 (179)
46 1hh2_P NUSA, N utilization sub 98.8 5.6E-09 1.9E-13 111.2 8.7 113 73-219 85-201 (344)
47 1y14_B B16, RPB7, DNA-directed 98.8 9.8E-09 3.4E-13 98.8 9.4 68 142-210 78-155 (171)
48 4ayb_E DNA-directed RNA polyme 98.8 1.1E-08 3.6E-13 99.0 9.6 79 256-335 75-168 (180)
49 2vnu_D Exosome complex exonucl 98.8 2.4E-10 8.3E-15 132.7 -2.7 155 25-217 585-760 (760)
50 2wp8_J Exosome complex exonucl 98.8 4.2E-10 1.4E-14 133.7 -1.2 155 25-217 802-977 (977)
51 2c35_B Human RPB7, DNA-directe 98.8 1.4E-08 4.8E-13 97.6 9.6 75 142-218 76-165 (172)
52 2b8k_G B16, DNA-directed RNA p 98.8 1.2E-08 4.1E-13 102.3 8.6 80 142-223 78-170 (215)
53 3psf_A Transcription elongatio 98.8 8.1E-10 2.8E-14 131.5 0.1 79 256-335 899-979 (1030)
54 2bh8_A 1B11; transcription, mo 98.8 1.1E-08 3.7E-13 91.2 7.3 86 144-300 10-99 (101)
55 2nn6_I 3'-5' exoribonuclease C 98.7 1.5E-08 5E-13 101.2 7.0 77 258-334 77-163 (209)
56 3m7n_A Putative uncharacterize 98.7 2.2E-08 7.6E-13 97.4 7.4 69 260-334 56-134 (179)
57 2b8k_G B16, DNA-directed RNA p 98.7 6.1E-08 2.1E-12 97.2 10.1 81 257-339 78-171 (215)
58 1y14_B B16, RPB7, DNA-directed 98.7 5.6E-08 1.9E-12 93.6 9.4 66 257-323 78-151 (171)
59 2je6_I RRP4, exosome complex R 98.6 3.3E-08 1.1E-12 101.1 7.5 74 144-218 71-147 (251)
60 1hh2_P NUSA, N utilization sub 98.6 1.7E-08 5.8E-13 107.6 5.1 110 190-333 85-200 (344)
61 2ba0_A Archeal exosome RNA bin 98.6 1.1E-07 3.7E-12 96.1 9.9 74 144-218 54-128 (229)
62 2z0s_A Probable exosome comple 98.6 3.5E-08 1.2E-12 99.8 6.1 76 259-334 63-141 (235)
63 3h0g_G DNA-directed RNA polyme 98.6 2.5E-08 8.4E-13 96.4 4.7 74 142-217 79-165 (172)
64 2c35_B Human RPB7, DNA-directe 98.6 1.4E-07 4.7E-12 90.7 9.0 75 257-333 76-165 (172)
65 2z0s_A Probable exosome comple 98.6 7.4E-08 2.5E-12 97.5 7.4 74 144-218 63-140 (235)
66 2je6_I RRP4, exosome complex R 98.5 1.2E-07 4E-12 97.1 7.1 76 259-334 71-148 (251)
67 2ba0_A Archeal exosome RNA bin 98.4 6.4E-07 2.2E-11 90.5 8.6 74 260-334 55-129 (229)
68 3h0g_G DNA-directed RNA polyme 98.3 2.7E-07 9.3E-12 89.1 4.6 75 257-333 79-166 (172)
69 2bh8_A 1B11; transcription, mo 98.2 4.1E-06 1.4E-10 74.5 8.6 86 257-377 8-97 (101)
70 3ayh_B DNA-directed RNA polyme 98.1 5.3E-06 1.8E-10 82.2 8.5 67 142-209 76-161 (203)
71 1k0r_A NUSA; two component arr 98.1 7.3E-06 2.5E-10 88.0 9.7 81 130-217 112-203 (366)
72 2bx2_L Ribonuclease E, RNAse E 98.0 9.1E-06 3.1E-10 90.8 9.5 76 144-219 42-128 (517)
73 2ckz_B C25, DNA-directed RNA p 98.0 7.5E-06 2.6E-10 82.2 8.0 69 142-210 76-158 (218)
74 2id0_A Exoribonuclease 2; RNAs 98.0 1.3E-05 4.3E-10 91.8 8.8 73 259-331 555-642 (644)
75 3ayh_B DNA-directed RNA polyme 97.9 2.3E-05 8E-10 77.6 7.6 66 257-323 76-158 (203)
76 1k0r_A NUSA; two component arr 97.8 3.1E-05 1.1E-09 83.2 7.8 69 255-331 121-202 (366)
77 2bx2_L Ribonuclease E, RNAse E 97.8 3.2E-05 1.1E-09 86.5 7.9 74 258-331 41-125 (517)
78 2asb_A Transcription elongatio 97.7 4.8E-05 1.6E-09 78.0 7.9 70 146-221 6-84 (251)
79 2ckz_B C25, DNA-directed RNA p 97.7 4.6E-05 1.6E-09 76.5 7.2 68 256-323 75-154 (218)
80 2wp8_J Exosome complex exonucl 97.7 2.7E-05 9.3E-10 92.9 6.3 70 263-332 887-977 (977)
81 2nn6_H Exosome complex exonucl 97.7 4.1E-05 1.4E-09 80.6 6.1 74 144-218 92-175 (308)
82 2vnu_D Exosome complex exonucl 97.6 4.9E-05 1.7E-09 88.5 5.8 69 264-332 671-760 (760)
83 2ja9_A Exosome complex exonucl 97.5 0.00022 7.6E-09 69.4 9.0 72 144-217 4-76 (175)
84 2r7d_A Ribonuclease II family 97.5 8.4E-06 2.9E-10 90.1 -1.8 138 27-217 324-461 (469)
85 2asb_A Transcription elongatio 97.5 0.00021 7.2E-09 73.2 8.0 66 261-334 6-82 (251)
86 2nn6_H Exosome complex exonucl 97.4 0.00016 5.6E-09 76.1 6.3 75 259-333 92-175 (308)
87 2ja9_A Exosome complex exonucl 97.3 0.00081 2.8E-08 65.5 9.6 68 260-330 5-74 (175)
88 2nn6_G Exosome complex exonucl 96.3 0.0065 2.2E-07 63.5 7.8 72 144-217 124-195 (289)
89 2nn6_G Exosome complex exonucl 95.0 0.044 1.5E-06 57.3 7.6 69 260-331 125-194 (289)
90 2rf4_A DNA-directed RNA polyme 91.9 0.55 1.9E-05 46.7 9.1 72 143-214 125-208 (214)
91 1wfq_A UNR protein; beta-barre 87.5 4.3 0.00015 35.2 10.1 59 260-326 13-74 (89)
92 3d0f_A Penicillin-binding 1 tr 87.4 1.5 5.1E-05 38.6 7.3 55 147-201 33-93 (106)
93 2yty_A Cold shock domain-conta 85.9 2 6.8E-05 37.2 7.1 64 255-326 8-73 (88)
94 3d0f_A Penicillin-binding 1 tr 84.1 1.7 6E-05 38.1 6.1 58 261-318 32-93 (106)
95 2rf4_A DNA-directed RNA polyme 83.2 3.5 0.00012 40.9 8.5 68 256-323 123-200 (214)
96 1c9o_A CSPB, cold-shock protei 82.5 6.5 0.00022 31.9 8.4 54 266-326 2-58 (66)
97 2ytx_A Cold shock domain-conta 81.3 2.9 9.8E-05 36.8 6.3 51 262-320 15-67 (97)
98 2r7d_A Ribonuclease II family 80.6 2.1 7.2E-05 47.3 6.4 57 261-331 402-460 (469)
99 3i4o_A Translation initiation 79.6 3.1 0.00011 35.6 5.7 63 149-215 14-77 (79)
100 3i2z_B RNA chaperone, negative 77.6 11 0.00038 31.0 8.4 55 265-326 5-63 (71)
101 3a0j_A Cold shock protein; OB- 76.2 7.7 0.00026 32.1 7.1 51 266-323 2-55 (73)
102 1g6p_A Cold shock protein TMCS 74.2 4.3 0.00015 33.0 5.0 52 267-325 2-56 (66)
103 1h95_A CSD, Y-box binding prot 74.1 10 0.00035 31.9 7.4 56 149-204 7-65 (79)
104 3cam_A Cold-shock domain famil 73.9 13 0.00045 30.3 7.8 58 266-330 2-63 (67)
105 1jjg_A M156R; beta barrel, S1 73.1 10 0.00035 33.6 7.2 65 142-208 27-94 (102)
106 2k5n_A Putative cold-shock pro 72.7 20 0.00068 29.9 8.8 48 150-204 2-52 (74)
107 2kcm_A Cold shock domain famil 72.2 5.9 0.0002 33.2 5.4 60 267-333 2-65 (74)
108 1wfq_A UNR protein; beta-barre 72.1 13 0.00043 32.2 7.7 53 147-204 15-68 (89)
109 3h8z_A FragIle X mental retard 71.9 6 0.00021 36.7 5.9 57 146-202 13-71 (128)
110 3aqq_A Calcium-regulated heat 69.0 11 0.00038 35.6 7.2 52 148-205 60-114 (147)
111 2yty_A Cold shock domain-conta 68.1 7.9 0.00027 33.4 5.5 54 146-204 14-68 (88)
112 3i2z_B RNA chaperone, negative 67.3 15 0.00052 30.2 6.9 51 150-204 5-58 (71)
113 1d7q_A Translation initiation 66.8 20 0.00068 33.9 8.3 72 148-224 30-102 (143)
114 2k5n_A Putative cold-shock pro 66.7 27 0.00091 29.2 8.3 59 265-333 2-64 (74)
115 3ulj_A LIN28B, DNA-binding pro 66.0 20 0.00069 31.1 7.7 67 265-338 8-85 (90)
116 1h95_A CSD, Y-box binding prot 64.9 21 0.00073 30.0 7.5 61 263-326 6-70 (79)
117 3cam_A Cold-shock domain famil 63.5 29 0.00099 28.2 7.8 51 151-205 2-55 (67)
118 3a0j_A Cold shock protein; OB- 61.8 35 0.0012 28.2 8.1 51 151-205 2-54 (73)
119 3ts2_A Protein LIN-28 homolog 61.6 20 0.00069 33.5 7.4 62 265-333 9-81 (148)
120 2dgy_A MGC11102 protein; EIF-1 60.5 14 0.00048 33.4 5.9 75 144-224 11-87 (111)
121 2ytx_A Cold shock domain-conta 56.7 22 0.00075 31.1 6.3 50 148-203 16-67 (97)
122 3h8z_A FragIle X mental retard 55.6 13 0.00045 34.4 4.9 55 262-318 14-70 (128)
123 1g6p_A Cold shock protein TMCS 54.4 26 0.0009 28.3 6.0 49 151-204 1-52 (66)
124 3aqq_A Calcium-regulated heat 53.7 35 0.0012 32.2 7.6 53 261-322 58-114 (147)
125 1c9o_A CSPB, cold-shock protei 53.4 38 0.0013 27.2 6.9 49 151-204 2-53 (66)
126 2kcm_A Cold shock domain famil 52.9 34 0.0012 28.5 6.6 60 151-217 1-64 (74)
127 1h9m_A MODG, molybdenum-bindin 52.8 89 0.003 27.3 9.9 49 264-319 82-134 (145)
128 1jjg_A M156R; beta barrel, S1 49.8 54 0.0019 29.0 7.5 67 255-325 25-94 (102)
129 3i4o_A Translation initiation 49.0 23 0.00078 30.2 5.0 60 265-330 15-77 (79)
130 1d7q_A Translation initiation 46.3 49 0.0017 31.2 7.2 65 260-331 27-94 (143)
131 3ts2_A Protein LIN-28 homolog 45.9 45 0.0015 31.2 7.0 53 149-205 8-70 (148)
132 1x65_A UNR protein; cell-free 42.6 9 0.00031 33.2 1.5 50 265-323 8-59 (89)
133 2ytv_A Cold shock domain-conta 41.0 17 0.00057 30.7 2.9 53 265-326 8-64 (79)
134 2dgy_A MGC11102 protein; EIF-1 39.9 55 0.0019 29.5 6.3 63 262-332 14-80 (111)
135 3ulj_A LIN28B, DNA-binding pro 39.7 77 0.0026 27.4 7.0 51 150-204 8-68 (90)
136 2lss_A Cold shock-like protein 45.9 6.1 0.00021 32.5 0.0 51 150-204 4-57 (70)
137 1jt8_A EIF-1A, probable transl 39.2 11 0.00037 33.7 1.5 67 149-220 20-88 (102)
138 1x65_A UNR protein; cell-free 36.8 12 0.00041 32.4 1.4 50 149-204 7-57 (89)
139 1fr3_A MOP, molybdate/tungstat 36.1 48 0.0016 25.5 4.7 46 150-202 8-58 (67)
140 2ytv_A Cold shock domain-conta 35.7 15 0.00052 31.0 1.8 50 149-204 7-58 (79)
141 2lss_A Cold shock-like protein 39.4 9 0.00031 31.5 0.0 53 265-324 4-60 (70)
142 2jpp_A Translational repressor 32.3 32 0.0011 28.8 3.2 31 305-335 8-38 (70)
143 2bti_A Carbon storage regulato 30.2 37 0.0013 27.9 3.2 31 305-335 10-40 (63)
144 1gut_A Mopii, molybdate bindin 29.9 62 0.0021 25.1 4.5 47 150-203 8-60 (68)
145 1yez_A MM1357; MAR30, autostru 29.8 2.1E+02 0.0072 22.7 7.8 53 259-327 10-62 (68)
146 1vpz_A Carbon storage regulato 29.2 39 0.0013 28.6 3.2 31 304-334 19-49 (73)
147 4hcz_A PHD finger protein 1; p 29.0 67 0.0023 26.1 4.4 41 256-296 10-52 (58)
148 1gut_A Mopii, molybdate bindin 27.5 47 0.0016 25.9 3.3 47 264-319 7-59 (68)
149 2oqk_A Putative translation in 27.1 1.1E+02 0.0036 27.6 6.0 71 142-218 26-97 (117)
150 1fr3_A MOP, molybdate/tungstat 25.5 56 0.0019 25.1 3.4 47 264-319 7-58 (67)
151 2eqj_A Metal-response element- 25.4 1.4E+02 0.0047 24.8 5.7 40 257-296 21-62 (66)
152 4b9x_A TDRD1, tudor domain-con 24.5 4.9E+02 0.017 25.2 12.2 150 77-283 15-177 (226)
153 1yvc_A MRR5; structure, autost 23.1 2.5E+02 0.0084 22.6 7.0 51 260-326 13-63 (70)
154 1yez_A MM1357; MAR30, autostru 21.5 2.8E+02 0.0096 22.0 7.0 47 144-205 10-57 (68)
155 2e5p_A Protein PHF1, PHD finge 20.5 2E+02 0.0067 24.0 5.7 41 257-297 17-59 (68)
No 1
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=99.95 E-value=1.4e-26 Score=240.63 Aligned_cols=199 Identities=16% Similarity=0.167 Sum_probs=168.8
Q ss_pred ceeEEeccCCceeEEeCcccCcccccccchhhcccceeEEEEEecCCCCCCCCcceecCCCCCcccccccccccCCChhh
Q 005707 44 SQRFLLPLPSSVRFFSQFQSGSALQHKSALHIISATGINVAVEESDSPAADDDSAGASDIPSDVETSESSSIKSEASPTL 123 (681)
Q Consensus 44 ~~~l~~dl~glrGfIP~sq~~~~~~~~~~~~~lvG~~i~VkVievD~~~~~~~~lvlSer~s~v~~ae~ss~~sea~~da 123 (681)
..+++++++|..||+|.+++.. -+|+++.|.|. .|++.+ ++++.+
T Consensus 19 ~~G~fv~~~g~egllp~se~~~----------~vGdevev~v~-~d~~~r----~iat~~-------------------- 63 (285)
T 3go5_A 19 DRFYFVQKDGQTYALAKEEGQH----------TVGDTVKGFAY-TDMKQK----LRLTTL-------------------- 63 (285)
T ss_dssp SSEEEEEETTEEEEEEGGGCCC----------CTTSEEEEEEE-ECTTSC----EEEECS--------------------
T ss_pred CCEEEEEcCCeEEEEEHHHCcc----------ccCCEEEEEEE-ECCCCC----EEEecc--------------------
Confidence 4788999999999999999842 39999999998 465544 666543
Q ss_pred HHhhhchhhhhcCCCCCCcCCCCCCcEEEEEEEEEe-cCeeEEEECC-CeEEEEeccccCCccccCcccccccCCEEEEE
Q 005707 124 AESRRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQ-PFGAFIDFGA-FTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVR 201 (681)
Q Consensus 124 ek~~~kr~~rk~e~~~lt~~~LkvGdIVeGkV~sV~-d~GaFVdLgg-gV~GLVPiSELS~~~v~d~~e~fkVGd~VkVk 201 (681)
...+++|+++.|+|++++ ++|+||++|. +.+||||+++++|.+. ..+++||.+.|+
T Consensus 64 ------------------~p~~~~G~~~~g~V~~v~~~~GaFVdiG~~~~d~lvp~sel~~~~~----~~~~~Gd~v~v~ 121 (285)
T 3go5_A 64 ------------------EVTATQDQFGWGRVTEVRKDLGVFVDTGLPDKEIVVSLDILPELKE----LWPKKGDQLYIR 121 (285)
T ss_dssp ------------------CCCSCSSSCEEEEEEEEETTTEEEEECSCTTCCEEEEGGGSCSSGG----GSCCTTCEEEEE
T ss_pred ------------------cccccCCCEEEEEEEEEccCceEEEEECCCCcEEEEEHHHCCcccc----cccCCCCEEEEE
Confidence 124689999999999999 7999999997 6999999999998643 246899999766
Q ss_pred EEEEeccCCceEEEEecc-chhhHhhhhccccccCCccccccccCCCCCCccccccccCCccCcEEEEEEEEEecceEEE
Q 005707 202 LIEANAETGRISLTMRES-DDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFI 280 (681)
Q Consensus 202 Vl~VD~ekgrI~LSlK~l-~~dp~ek~~~~~p~s~d~~~~k~r~~~k~~~~k~~~~~sklkvGdIV~G~VknVt~~GaFV 280 (681)
+.+|+ ++||.+|+|+. ..++|. ....+|++|++|.|+|++++++|+||
T Consensus 122 -l~iD~-~~Ri~ls~k~~~~~~~~~-----------------------------~~~~~~~~G~~V~g~V~~i~~~G~fV 170 (285)
T 3go5_A 122 -LEVDK-KDRIWGLLAYQEDFQRLA-----------------------------RPAYNNMQNQNWPAIVYRLKLSGTFV 170 (285)
T ss_dssp -EEECT-TSCEEEEECCHHHHHHHC-----------------------------CCCCSCCTTCEEEEEEEEEETTEEEE
T ss_pred -EEECC-CCcEEEEehhhhhcchhh-----------------------------hhhhhCCCCCEEEEEEEEEeCCcEEE
Confidence 58998 78999999976 456772 34678999999999999999999999
Q ss_pred -EeCCCeEEEEeCCCCCcccccccCCCCcccCCCEEEEEEEEEe--CCeEEEEEeccCCCcCC
Q 005707 281 -SLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKKEDDVGSN 340 (681)
Q Consensus 281 -eIg~GIeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL~ID--kgKI~LSLK~~~~DP~e 340 (681)
.+++|++||||.+|+++ .|++||.|+|+|++|+ ++||.||||+....+++
T Consensus 171 ~~i~~g~~Glih~SEl~~----------~l~~Gd~v~~~V~~id~~d~kI~LSlk~~~~~~~~ 223 (285)
T 3go5_A 171 YLPENNMLGFIHPSERYA----------EPRLGQVLDARVIGFREVDRTLNLSLKPRSFEMLE 223 (285)
T ss_dssp EETTTTEEEEECGGGCSS----------CCCTTCEEEEEEEEEETTTTEEEEECSCCCCCCCC
T ss_pred EEeCCCeEEEEEHHHccc----------cCCCCCEEEEEEEEEECCCCeEEEEeChhhhhccc
Confidence 99999999999999873 4799999999999997 59999999998766655
No 2
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=99.92 E-value=1.2e-24 Score=226.26 Aligned_cols=172 Identities=12% Similarity=0.029 Sum_probs=147.9
Q ss_pred CCCcEEEEEEEEEecCeeEEEECCCeEEEEeccccCCccccCcccccccCCEEEEEEEEEeccCCceEEEEeccchhhHh
Q 005707 146 IPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISKL 225 (681)
Q Consensus 146 kvGdIVeGkV~sV~d~GaFVdLgggV~GLVPiSELS~~~v~d~~e~fkVGd~VkVkVl~VD~ekgrI~LSlK~l~~dp~e 225 (681)
.+|++++|+|+++.++|+||+++ +.+||||.++++. ++||.|+|+|+. |. .+|+.+|++ .|
T Consensus 5 ~~G~~v~g~V~~~~~~G~fv~~~-g~egllp~se~~~----------~vGdevev~v~~-d~-~~r~iat~~----~p-- 65 (285)
T 3go5_A 5 NLASFIVGLIIDENDRFYFVQKD-GQTYALAKEEGQH----------TVGDTVKGFAYT-DM-KQKLRLTTL----EV-- 65 (285)
T ss_dssp TTTEEEEEEEEEECSSEEEEEET-TEEEEEEGGGCCC----------CTTSEEEEEEEE-CT-TSCEEEECS----CC--
T ss_pred cCCCEEEEEEEEEECCEEEEEcC-CeEEEEEHHHCcc----------ccCCEEEEEEEE-CC-CCCEEEecc----cc--
Confidence 47999999999999999999997 5999999999943 799999999984 54 567777764 22
Q ss_pred hhhccccccCCccccccccCCCCCCccccccccCCccCcEEEEEEEEEe-cceEEEEeCC-CeEEEEeCCCCCccccccc
Q 005707 226 QQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLT-RSGAFISLPE-GEEGFLPTSEESDDGFANM 303 (681)
Q Consensus 226 k~~~~~p~s~d~~~~k~r~~~k~~~~k~~~~~sklkvGdIV~G~VknVt-~~GaFVeIg~-GIeGLLpiSELSd~~ie~~ 303 (681)
.+++|+++.|+|++++ ++|+||+++. +++||||.++++|.+.
T Consensus 66 ---------------------------------~~~~G~~~~g~V~~v~~~~GaFVdiG~~~~d~lvp~sel~~~~~--- 109 (285)
T 3go5_A 66 ---------------------------------TATQDQFGWGRVTEVRKDLGVFVDTGLPDKEIVVSLDILPELKE--- 109 (285)
T ss_dssp ---------------------------------CSCSSSCEEEEEEEEETTTEEEEECSCTTCCEEEEGGGSCSSGG---
T ss_pred ---------------------------------cccCCCEEEEEEEEEccCceEEEEECCCCcEEEEEHHHCCcccc---
Confidence 3789999999999999 7999999997 7999999999999752
Q ss_pred CCCCcccCCCEEEEEEEEEe-CCeEEEEEecc-CCCcCC--------cceeeeEEEEeecccEEEE-EEcCCeEEEeeCC
Q 005707 304 MGGSSLQVGQEVSVRVLRIS-RGQVTLTMKKE-DDVGSN--------LQLTQGVIHAATNPFVLAF-RSNKDISSFLDER 372 (681)
Q Consensus 304 ~p~~~fkVGqkVkVrVL~ID-kgKI~LSLK~~-~~DP~e--------~~lv~G~V~~~i~~fGlfV-~l~~gI~GfIp~~ 372 (681)
..+++||.|.|+ +.+| ++||.||+|+. ..+||. ++.+.|+|. ++.+||+|| .+++++.||||.+
T Consensus 110 ---~~~~~Gd~v~v~-l~iD~~~Ri~ls~k~~~~~~~~~~~~~~~~~G~~V~g~V~-~i~~~G~fV~~i~~g~~Glih~S 184 (285)
T 3go5_A 110 ---LWPKKGDQLYIR-LEVDKKDRIWGLLAYQEDFQRLARPAYNNMQNQNWPAIVY-RLKLSGTFVYLPENNMLGFIHPS 184 (285)
T ss_dssp ---GSCCTTCEEEEE-EEECTTSCEEEEECCHHHHHHHCCCCCSCCTTCEEEEEEE-EEETTEEEEEETTTTEEEEECGG
T ss_pred ---cccCCCCEEEEE-EEECCCCcEEEEehhhhhcchhhhhhhhCCCCCEEEEEEE-EEeCCcEEEEEeCCCeEEEEEHH
Confidence 467999999766 6898 58999999875 345654 366899999 899999999 9999999999999
Q ss_pred ccccc
Q 005707 373 DKSAT 377 (681)
Q Consensus 373 els~~ 377 (681)
|+++.
T Consensus 185 El~~~ 189 (285)
T 3go5_A 185 ERYAE 189 (285)
T ss_dssp GCSSC
T ss_pred Hcccc
Confidence 99975
No 3
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=99.76 E-value=4.7e-21 Score=187.65 Aligned_cols=124 Identities=19% Similarity=0.291 Sum_probs=104.0
Q ss_pred CCCCcEEEEEEEEEecCeeEEEE--CCCeEEEEeccccCCccccCcccccccCCEEEEEEEEEeccCCceEEEEeccchh
Q 005707 145 LIPGATFTGKVRSIQPFGAFIDF--GAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDI 222 (681)
Q Consensus 145 LkvGdIVeGkV~sV~d~GaFVdL--gggV~GLVPiSELS~~~v~d~~e~fkVGd~VkVkVl~VD~ekgrI~LSlK~l~~d 222 (681)
+++|+++.|+|++|++||+||+| .++++||||+++|+|+++.++.+.|++||.|+|+|+++|.++++|.||+|++..+
T Consensus 13 p~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~~~~rI~LSlk~~~~~ 92 (182)
T 1kl9_A 13 PEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPE 92 (182)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEESTTCCHH
T ss_pred CCCCCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEEeecCcC
Confidence 58999999999999999999999 5679999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhccccccCCccccccccCCCCCCccccccccCCccCcEEEEEEEEEec-ceEEEEeCCCeEEEEeCCCCCccc
Q 005707 223 SKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTR-SGAFISLPEGEEGFLPTSEESDDG 299 (681)
Q Consensus 223 p~ek~~~~~p~s~d~~~~k~r~~~k~~~~k~~~~~sklkvGdIV~G~VknVt~-~GaFVeIg~GIeGLLpiSELSd~~ 299 (681)
||. ....+|+.|+.+.|+|+++++ +| |.|.+|++||+|.++++|.+
T Consensus 93 p~~-----------------------------~~~~~~~~g~~v~g~v~~i~~~~g--v~l~~giegl~h~s~~~~~~ 139 (182)
T 1kl9_A 93 EAI-----------------------------KCEDKFTKSKTVYSILRHVAEVLE--YTKDEQLESLFQRTAWVFDD 139 (182)
T ss_dssp HHH-----------------------------HHHHHHHHHHHHHHHHHHHHHHTT--CCSHHHHHHHHHHTHHHHHH
T ss_pred hHH-----------------------------HHHHhccCCCEEEEEEEEchhhcC--CcccCChhheEEeeecchhh
Confidence 983 456789999999999999998 99 89999999999999887753
No 4
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=99.61 E-value=1.1e-17 Score=163.94 Aligned_cols=113 Identities=15% Similarity=0.241 Sum_probs=89.3
Q ss_pred CccCcEEEEEEEEEecceEEEEe--CCCeEEEEeCCCCCcccccccCCCCcccCCCEEEEEEEEEe--CCeEEEEEeccC
Q 005707 260 FVKGQDLEGTVKNLTRSGAFISL--PEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKKED 335 (681)
Q Consensus 260 lkvGdIV~G~VknVt~~GaFVeI--g~GIeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL~ID--kgKI~LSLK~~~ 335 (681)
+++|+++.|+|++|++||+||+| .+|++||||+++++|.++. ++...|++||.|.|+|+++| ++||.||||+..
T Consensus 13 p~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~~v~--~~~~~~~vGd~V~VkVl~vD~~~~rI~LSlk~~~ 90 (182)
T 1kl9_A 13 PEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIR--SINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVS 90 (182)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC--------------CTTCEEEEEEEEEETTTTEEEEESTTCC
T ss_pred CCCCCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCCcccC--CHHHhcCCCCEEEEEEEEEECCCCEEEEEEeecC
Confidence 37999999999999999999999 5799999999999999864 45899999999999999998 589999999999
Q ss_pred CCcCCc---c-----eeeeEEEEeecc-cEEEEEEcCCeEEEeeCCccccc
Q 005707 336 DVGSNL---Q-----LTQGVIHAATNP-FVLAFRSNKDISSFLDERDKSAT 377 (681)
Q Consensus 336 ~DP~e~---~-----lv~G~V~~~i~~-fGlfV~l~~gI~GfIp~~els~~ 377 (681)
.+||.. + .+.|+|. .+.+ || +.+.+|++||+|.+++++.
T Consensus 91 ~~p~~~~~~~~~~g~~v~g~v~-~i~~~~g--v~l~~giegl~h~s~~~~~ 138 (182)
T 1kl9_A 91 PEEAIKCEDKFTKSKTVYSILR-HVAEVLE--YTKDEQLESLFQRTAWVFD 138 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHTT--CCSHHHHHHHHHHTHHHHH
T ss_pred cChHHHHHHhccCCCEEEEEEE-EchhhcC--CcccCChhheEEeeecchh
Confidence 999873 2 3466766 5666 99 7888999999999988654
No 5
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=99.61 E-value=1.2e-16 Score=155.65 Aligned_cols=104 Identities=16% Similarity=0.293 Sum_probs=89.2
Q ss_pred CCCcEEEEEEEEEecCeeEEEE--CCCeEEEEeccccCCccccCcccccccCCEEEEEEEEEeccCCceEEEEeccchhh
Q 005707 146 IPGATFTGKVRSIQPFGAFIDF--GAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDIS 223 (681)
Q Consensus 146 kvGdIVeGkV~sV~d~GaFVdL--gggV~GLVPiSELS~~~v~d~~e~fkVGd~VkVkVl~VD~ekgrI~LSlK~l~~dp 223 (681)
++|+++.|+|+++.+||+||+| +++++||||+++|+|+++.++.+.|++||.|+|+|+.+|+++++|.||+|.+..+|
T Consensus 14 ~~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~vd~~~~~I~LSlk~~~~~~ 93 (175)
T 2a19_A 14 EIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKGYIDLSKRRVSSED 93 (175)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC--------CCCCCCCTTSEEEEEEEEEETTTTEEEEESTTCCHHH
T ss_pred CCCCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEecCcCh
Confidence 4899999999999999999999 36699999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhccccccCCccccccccCCCCCCccccccccCCccCcEEEEEEEEEe-cceE
Q 005707 224 KLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLT-RSGA 278 (681)
Q Consensus 224 ~ek~~~~~p~s~d~~~~k~r~~~k~~~~k~~~~~sklkvGdIV~G~VknVt-~~Ga 278 (681)
|. ....+|+.|+.+.|+|++++ ++|+
T Consensus 94 ~~-----------------------------~~~~~~~~g~~v~g~V~~i~~~~G~ 120 (175)
T 2a19_A 94 II-----------------------------KCEEKYQKSKTVHSILRYCAEKFQI 120 (175)
T ss_dssp HH-----------------------------HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HH-----------------------------HHHHhccCCCcceEEEEEchhhcCC
Confidence 83 45778999999999999998 7886
No 6
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.59 E-value=5.5e-15 Score=134.00 Aligned_cols=85 Identities=29% Similarity=0.420 Sum_probs=76.4
Q ss_pred ccccCCccCcEEEEEEEEEecceEEEEeCCCeEEEEeCCCCCcc-cccccCCCCcccCCCEEEEEEEEEe--CCeEEEEE
Q 005707 255 MKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD-GFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTM 331 (681)
Q Consensus 255 ~~~sklkvGdIV~G~VknVt~~GaFVeIg~GIeGLLpiSELSd~-~ie~~~p~~~fkVGqkVkVrVL~ID--kgKI~LSL 331 (681)
....++++|+++.|+|++|.++|+||+|++|++||||+++++|. +. .++...|++||.|.|+|+++| ++||.|||
T Consensus 23 ~~~~~~~~G~~~~G~V~~v~~~G~FV~l~~~~~Glvhisel~~~~~~--~~~~~~~~vGd~V~vkV~~vd~~~~rI~lsl 100 (115)
T 2khi_A 23 AIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKN--IHPSKVVNVGDVVEVMVLDIDEERRRISLGL 100 (115)
T ss_dssp CSSCSSCSSCEEEEEEEEEETTEEEEECSTTCEEEEETTSSSCSSTT--CSSTTTCCTTCEEEEEEEEEETTTTEEEECC
T ss_pred HHhhcCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCccccc--cCcccEECCCCEEEEEEEEEECCCCEEEEEE
Confidence 34578999999999999999999999999999999999999984 33 345789999999999999998 58999999
Q ss_pred eccCCCcCCc
Q 005707 332 KKEDDVGSNL 341 (681)
Q Consensus 332 K~~~~DP~e~ 341 (681)
|+..+|||+.
T Consensus 101 k~~~~~p~~~ 110 (115)
T 2khi_A 101 KQCKANPWQQ 110 (115)
T ss_dssp CCCCSSCCCC
T ss_pred EecCcCHHHH
Confidence 9999999984
No 7
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=99.57 E-value=2.3e-16 Score=165.71 Aligned_cols=111 Identities=21% Similarity=0.340 Sum_probs=102.5
Q ss_pred cCCCCCCcEEEEEEEEEecCeeEEEEC--CCeEEEEeccccCCccccCcccccccCCEEEEEEEEEeccCCceEEEEecc
Q 005707 142 NEDLIPGATFTGKVRSIQPFGAFIDFG--AFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRES 219 (681)
Q Consensus 142 ~~~LkvGdIVeGkV~sV~d~GaFVdLg--ggV~GLVPiSELS~~~v~d~~e~fkVGd~VkVkVl~VD~ekgrI~LSlK~l 219 (681)
...+++|++|.|+|++|.+||+||+|+ ++++||||+++++|+++.++.+.|++||.|+|+|+.+|+++++|.||+|.+
T Consensus 8 ~~~~~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~~~i~~~~~~~kvGd~V~VkVl~vD~~~~rI~LSlK~~ 87 (308)
T 1q8k_A 8 HKFPEVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVDKEKGYIDLSKRRV 87 (308)
T ss_dssp SCCCSSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEETTTTEEEEECSSC
T ss_pred hcCCCCCCEEEEEEEEEeCcEEEEEECCCCCeEEEEEhHHcCcccccCHHHhcCCCCEEEEEEEEEeCCCCEEEEEEEec
Confidence 445679999999999999999999997 679999999999999999999999999999999999999999999999999
Q ss_pred chhhHhhhhccccccCCccccccccCCCCCCccccccccCCccCcEEEEEEEEEec-ceEEEE
Q 005707 220 DDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTR-SGAFIS 281 (681)
Q Consensus 220 ~~dp~ek~~~~~p~s~d~~~~k~r~~~k~~~~k~~~~~sklkvGdIV~G~VknVt~-~GaFVe 281 (681)
..+||. ....+|++|+++.|+|+++.+ ||+|++
T Consensus 88 ~~~p~~-----------------------------~~~~~~~~G~~v~G~V~~v~~~~G~fi~ 121 (308)
T 1q8k_A 88 SPEEAI-----------------------------KCEDKFTKSKTVYSILRHVAEVLEYTKD 121 (308)
T ss_dssp CHHHHH-----------------------------HHHHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred ccChHH-----------------------------HHHHHccCCCeeEEEEEEcccccCCccC
Confidence 999983 456789999999999999998 599874
No 8
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.50 E-value=2.4e-14 Score=128.38 Aligned_cols=80 Identities=29% Similarity=0.438 Sum_probs=71.8
Q ss_pred ccccCCccCcEEEEEEEEEecceEEEEeCCCeEEEEeCCCCCcccccccCCCCcccCCCEEEEEEEEEeC--CeEEEEEe
Q 005707 255 MKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISR--GQVTLTMK 332 (681)
Q Consensus 255 ~~~sklkvGdIV~G~VknVt~~GaFVeIg~GIeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL~IDk--gKI~LSLK 332 (681)
....++++|+++.|+|++|.++|+||+|++|++||||.+++++.++. .+...|++||.|.|+|+++|. ++|.||+|
T Consensus 24 ~~~~~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gll~~sel~~~~~~--~~~~~~~vGd~V~v~V~~vd~~~~ki~LS~k 101 (109)
T 2khj_A 24 NWVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVE--DATLVLSVGDEVEAKFTGVDRKNRAISLSVR 101 (109)
T ss_dssp HHTTTCCSSSEEEEEEEEECSSCEEEECSTTCBCCBCTTCCCSSSSS--SGGGSCCTTCEEEEEEEEEETTTTEEEEETT
T ss_pred HHhhcCCCCCEEEEEEEEEECCeEEEEECCCCEEEEEHHHcCccccc--ChhhccCCCCEEEEEEEEEECCCCEEEEEEe
Confidence 45678999999999999999999999999999999999999998754 347789999999999999984 68999999
Q ss_pred ccCC
Q 005707 333 KEDD 336 (681)
Q Consensus 333 ~~~~ 336 (681)
.+.+
T Consensus 102 ~~~~ 105 (109)
T 2khj_A 102 AKDE 105 (109)
T ss_dssp SSSS
T ss_pred ecCh
Confidence 8754
No 9
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=99.50 E-value=3.1e-14 Score=123.97 Aligned_cols=80 Identities=16% Similarity=0.234 Sum_probs=74.1
Q ss_pred CCcCCCCCCcEEEEEEEEEecCeeEEEEC--CCeEEEEecc-ccCCccccCcccccccCCEEEEEEEEEeccCCceEEEE
Q 005707 140 VKNEDLIPGATFTGKVRSIQPFGAFIDFG--AFTDGLVHVS-RLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTM 216 (681)
Q Consensus 140 lt~~~LkvGdIVeGkV~sV~d~GaFVdLg--ggV~GLVPiS-ELS~~~v~d~~e~fkVGd~VkVkVl~VD~ekgrI~LSl 216 (681)
+.|...++|+++.|+|+ +++||+||+|. ++++||||++ +++++++.++.+.+ +||.|+|+|+++|.++++|.||+
T Consensus 4 ~~y~~~~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~~~~~~~~~~~~-~Gd~V~VkV~~vd~~~~kI~lsl 81 (88)
T 1luz_A 4 FCYSLPNAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHMDRYVEYRDKL-VGKTVKVKVIRVDYTKGYIDVNY 81 (88)
T ss_dssp CCSCCCCTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCHHHHHHHHHHH-TTCEEEEEEEEEETTTTEEEEEE
T ss_pred EEecCCCCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhCcccccCHhHEe-CCCEEEEEEEEEECCCCEEEEEE
Confidence 45788899999999999 99999999996 3699999999 99999999999999 99999999999999999999999
Q ss_pred eccch
Q 005707 217 RESDD 221 (681)
Q Consensus 217 K~l~~ 221 (681)
|.+.+
T Consensus 82 k~~~~ 86 (88)
T 1luz_A 82 KRMCR 86 (88)
T ss_dssp EEECS
T ss_pred eecCC
Confidence 97654
No 10
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=99.49 E-value=6.6e-14 Score=129.79 Aligned_cols=82 Identities=38% Similarity=0.727 Sum_probs=77.8
Q ss_pred CCCCCCcEEEEEEEEEecCeeEEEECCCeEEEEeccccCCccccCcccccccCCEEEEEEEEEeccCCceEEEEeccchh
Q 005707 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDI 222 (681)
Q Consensus 143 ~~LkvGdIVeGkV~sV~d~GaFVdLgggV~GLVPiSELS~~~v~d~~e~fkVGd~VkVkVl~VD~ekgrI~LSlK~l~~d 222 (681)
..+++|++|.|+|++|.++|+||+|+++++||||+++++++++.++...|++||.|+|+|+.+|.++++|.||++.+..+
T Consensus 3 ~~~~vG~iv~G~V~~i~~~G~FV~l~~~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~kI~LSlk~~~~~ 82 (130)
T 2k4k_A 3 AKFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGKISLSIRATQAA 82 (130)
T ss_dssp CCCCTTCEEEEEEEEEETTEEEEEEETTEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESHHHHHS
T ss_pred CcCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEEeCCCCEEEEEEeecccC
Confidence 46899999999999999999999998889999999999999999999999999999999999999999999999988877
Q ss_pred hH
Q 005707 223 SK 224 (681)
Q Consensus 223 p~ 224 (681)
|+
T Consensus 83 p~ 84 (130)
T 2k4k_A 83 PE 84 (130)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 11
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.49 E-value=8.2e-14 Score=126.31 Aligned_cols=83 Identities=27% Similarity=0.454 Sum_probs=78.1
Q ss_pred cCCCCCCcEEEEEEEEEecCeeEEEECCCeEEEEeccccCCc-cccCcccccccCCEEEEEEEEEeccCCceEEEEeccc
Q 005707 142 NEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDN-FVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESD 220 (681)
Q Consensus 142 ~~~LkvGdIVeGkV~sV~d~GaFVdLgggV~GLVPiSELS~~-~v~d~~e~fkVGd~VkVkVl~VD~ekgrI~LSlK~l~ 220 (681)
...+++|+++.|+|+++.++|+||+|+++++||||+++++++ +..++...|++||.|+|+|+.+|.++++|.||++.+.
T Consensus 25 ~~~~~~G~~~~G~V~~v~~~G~FV~l~~~~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~rI~lslk~~~ 104 (115)
T 2khi_A 25 AKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCK 104 (115)
T ss_dssp SCSSCSSCEEEEEEEEEETTEEEEECSTTCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEEETTTTEEEECCCCCC
T ss_pred hhcCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCccccccCcccEECCCCEEEEEEEEEECCCCEEEEEEEecC
Confidence 357899999999999999999999999889999999999984 7788899999999999999999999999999999999
Q ss_pred hhhH
Q 005707 221 DISK 224 (681)
Q Consensus 221 ~dp~ 224 (681)
.+||
T Consensus 105 ~~p~ 108 (115)
T 2khi_A 105 ANPW 108 (115)
T ss_dssp SSCC
T ss_pred cCHH
Confidence 9998
No 12
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=5.7e-14 Score=125.17 Aligned_cols=83 Identities=25% Similarity=0.344 Sum_probs=74.4
Q ss_pred cccCCccCcEEEEEEEEEecceEEEEeCC---CeEEEEeCCCC-CcccccccCCCCcccCCCEEEEEEEEEeCCeEEEEE
Q 005707 256 KTTKFVKGQDLEGTVKNLTRSGAFISLPE---GEEGFLPTSEE-SDDGFANMMGGSSLQVGQEVSVRVLRISRGQVTLTM 331 (681)
Q Consensus 256 ~~sklkvGdIV~G~VknVt~~GaFVeIg~---GIeGLLpiSEL-Sd~~ie~~~p~~~fkVGqkVkVrVL~IDkgKI~LSL 331 (681)
...++++|+++.|+|++|.+||+||+|++ +++||||++++ ++.++. ++...|++||.|+|+|+++|.+||.|||
T Consensus 6 ~~~~~~vG~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~~~~~--~~~~~~~~Gd~V~VkV~~vd~~~i~LSl 83 (103)
T 2eqs_A 6 SGEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVA--NVADVVSKGQRVKVKVLSFTGTKTSLSM 83 (103)
T ss_dssp CCSSCCTTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSSCCC--CHHHHCCTTCEEEEEEEEEETTEEEEES
T ss_pred ccccCCCCCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCCcccC--CcccEeCCCCEEEEEEEEEECCeeEEEE
Confidence 46678999999999999999999999996 99999999999 555432 3467899999999999999999999999
Q ss_pred eccCCCcCC
Q 005707 332 KKEDDVGSN 340 (681)
Q Consensus 332 K~~~~DP~e 340 (681)
|...++||.
T Consensus 84 k~~~~~~~~ 92 (103)
T 2eqs_A 84 KDVDQETGE 92 (103)
T ss_dssp TTBCTTTCC
T ss_pred eecccCCch
Confidence 999999987
No 13
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=99.48 E-value=3.8e-15 Score=154.27 Aligned_cols=109 Identities=20% Similarity=0.415 Sum_probs=99.9
Q ss_pred CCCCCcEEEEEEEEEecCeeEEEEC--CCeEEEEeccccCCccccCcccccccCCEEEEEEEEEeccCCceEEEEeccch
Q 005707 144 DLIPGATFTGKVRSIQPFGAFIDFG--AFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDD 221 (681)
Q Consensus 144 ~LkvGdIVeGkV~sV~d~GaFVdLg--ggV~GLVPiSELS~~~v~d~~e~fkVGd~VkVkVl~VD~ekgrI~LSlK~l~~ 221 (681)
.+++|++|.|+|+++.+||+||+|+ ++++||||+++++++++.++.+.|++||.|.|+|+.+|+++++|.||++.+..
T Consensus 8 ~p~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~vD~~~~~I~LSlk~~~~ 87 (275)
T 3aev_A 8 YPEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSLRRVTQ 87 (275)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESTTCCH
T ss_pred CCCCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCcccccCHHhccCCCCEEEEEEEEEECCCCEEEEEEeecCc
Confidence 4568999999999999999999997 57999999999999999999999999999999999999999999999999998
Q ss_pred hhHhhhhccccccCCccccccccCCCCCCccccccccCCccCcEEEEEEEEEe-cceEEEE
Q 005707 222 ISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLT-RSGAFIS 281 (681)
Q Consensus 222 dp~ek~~~~~p~s~d~~~~k~r~~~k~~~~k~~~~~sklkvGdIV~G~VknVt-~~GaFVe 281 (681)
++|. ....+|+.|+.+.|.|+++. ++|++++
T Consensus 88 ~~~~-----------------------------~~~~~~~~g~~v~g~v~~v~~~~G~~~e 119 (275)
T 3aev_A 88 QQRK-----------------------------AKLQEFKRAQKAENLLRLAAEKLGKDFE 119 (275)
T ss_dssp HHHH-----------------------------HHHHHHHHHHHHHHHHHHHHHHHTCCHH
T ss_pred chhH-----------------------------HHHHhccCCCeEEEEEEEchhhcCCCHH
Confidence 8883 34677899999999999998 8898655
No 14
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.5e-13 Score=122.47 Aligned_cols=82 Identities=35% Similarity=0.594 Sum_probs=75.6
Q ss_pred CcCCCCCCcEEEEEEEEEecCeeEEEECC---CeEEEEecccc-CCccccCcccccccCCEEEEEEEEEeccCCceEEEE
Q 005707 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGA---FTDGLVHVSRL-SDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTM 216 (681)
Q Consensus 141 t~~~LkvGdIVeGkV~sV~d~GaFVdLgg---gV~GLVPiSEL-S~~~v~d~~e~fkVGd~VkVkVl~VD~ekgrI~LSl 216 (681)
....+++|++|.|+|++|.+||+||+|++ +++||||++++ ++.++.++.+.|++||.|+|+|+.+|. ++|.||+
T Consensus 6 ~~~~~~vG~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV~~vd~--~~i~LSl 83 (103)
T 2eqs_A 6 SGEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTG--TKTSLSM 83 (103)
T ss_dssp CCSSCCTTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEET--TEEEEES
T ss_pred ccccCCCCCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEEEEEEEC--CeeEEEE
Confidence 46678999999999999999999999985 79999999999 677788899999999999999999997 6999999
Q ss_pred eccchhhH
Q 005707 217 RESDDISK 224 (681)
Q Consensus 217 K~l~~dp~ 224 (681)
|.+.+++|
T Consensus 84 k~~~~~~~ 91 (103)
T 2eqs_A 84 KDVDQETG 91 (103)
T ss_dssp TTBCTTTC
T ss_pred eecccCCc
Confidence 99988887
No 15
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=99.45 E-value=4e-13 Score=114.18 Aligned_cols=74 Identities=26% Similarity=0.463 Sum_probs=68.3
Q ss_pred CCCCCcEEEEEEEEEecCeeEEEECCCeEEEEeccccCCccccCcccccccCCEEEEEEEEEeccCCceEEEEeccch
Q 005707 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDD 221 (681)
Q Consensus 144 ~LkvGdIVeGkV~sV~d~GaFVdLgggV~GLVPiSELS~~~v~d~~e~fkVGd~VkVkVl~VD~ekgrI~LSlK~l~~ 221 (681)
++++|+++.|+|+++.++|+||+|+++++||||++++++.++ +.|++||.|+|+|+++|.++++|.||++++..
T Consensus 2 ~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gllh~sel~~~~~----~~~~~Gd~V~v~V~~vd~~~~~i~lsl~~~~~ 75 (80)
T 2k52_A 2 DVEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMISLRL----ENLNVGDEIIVQAIDVRPEKREIDFKYIPLEH 75 (80)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEETTEEEEECGGGCSSCCG----GGCCTTCEEEEEEEEEETTTTEEEEEECSCC-
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEECCCCEEEEEHHHCCcccc----eeeCCCCEEEEEEEEEECCCCEEEEEEeeccc
Confidence 578999999999999999999999978999999999998765 67999999999999999999999999997654
No 16
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=6.7e-14 Score=128.11 Aligned_cols=83 Identities=29% Similarity=0.406 Sum_probs=76.9
Q ss_pred cCCCCCCcEEEEEEEEEecCeeEEEECC-CeEEEEeccccCCccccCcccccccCCEEEEEEEEEeccC--CceEEEEec
Q 005707 142 NEDLIPGATFTGKVRSIQPFGAFIDFGA-FTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAET--GRISLTMRE 218 (681)
Q Consensus 142 ~~~LkvGdIVeGkV~sV~d~GaFVdLgg-gV~GLVPiSELS~~~v~d~~e~fkVGd~VkVkVl~VD~ek--grI~LSlK~ 218 (681)
...+++|++|.|+|++|.+||+||+|++ +.+||||+++++|+++.++.+.|++||.|+|+|+.+|.++ ++|.||+|.
T Consensus 17 ~~~~~vG~iv~G~V~~I~~fGaFV~l~g~~~~Glvhisel~~~~~~~~~~~~~~Gd~V~VkV~~vd~~~~~~~i~LSlk~ 96 (119)
T 2cqo_A 17 ENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKV 96 (119)
T ss_dssp CCSCCTTCEEEEEEEEEETTEEEEECTTCSSCEEEEHHHHCSSCCSCHHHHCCTTCEEEEEEEEEEECSSCEEEEEESTT
T ss_pred hcccCCCCEEEEEEEEEeCceEEEEECCCcEEEEEEHHHCCcccccChhhcCCCCCEEEEEEEEEeccccCceEEEEEee
Confidence 4578899999999999999999999966 4799999999999999999999999999999999999864 699999999
Q ss_pred cchhhH
Q 005707 219 SDDISK 224 (681)
Q Consensus 219 l~~dp~ 224 (681)
+..++|
T Consensus 97 ~~~~~~ 102 (119)
T 2cqo_A 97 VNQGTG 102 (119)
T ss_dssp BCSSSC
T ss_pred cccCCc
Confidence 988888
No 17
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.44 E-value=1.2e-13 Score=123.77 Aligned_cols=80 Identities=29% Similarity=0.422 Sum_probs=75.3
Q ss_pred cCCCCCCcEEEEEEEEEecCeeEEEECCCeEEEEeccccCCccccCcccccccCCEEEEEEEEEeccCCceEEEEeccch
Q 005707 142 NEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDD 221 (681)
Q Consensus 142 ~~~LkvGdIVeGkV~sV~d~GaFVdLgggV~GLVPiSELS~~~v~d~~e~fkVGd~VkVkVl~VD~ekgrI~LSlK~l~~ 221 (681)
...+++|++|.|+|+++.++|+||+|+++++||||+++++++++.++.+.|++||.|+|+|+.+|.++++|.||++.+..
T Consensus 26 ~~~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~V~~vd~~~~ki~LS~k~~~~ 105 (109)
T 2khj_A 26 VALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVRAKDE 105 (109)
T ss_dssp TTTCCSSSEEEEEEEEECSSCEEEECSTTCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEEEEEETTTTEEEEETTSSSS
T ss_pred hhcCCCCCEEEEEEEEEECCeEEEEECCCCEEEEEHHHcCcccccChhhccCCCCEEEEEEEEEECCCCEEEEEEeecCh
Confidence 46899999999999999999999999988999999999999999999999999999999999999999999999997643
No 18
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=99.43 E-value=2.1e-13 Score=126.45 Aligned_cols=82 Identities=29% Similarity=0.491 Sum_probs=75.0
Q ss_pred cCCccCcEEEEEEEEEecceEEEEeCCCeEEEEeCCCCCcccccccCCCCcccCCCEEEEEEEEEe--CCeEEEEEeccC
Q 005707 258 TKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKKED 335 (681)
Q Consensus 258 sklkvGdIV~G~VknVt~~GaFVeIg~GIeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL~ID--kgKI~LSLK~~~ 335 (681)
.++++|++|.|+|++|++||+||+|++|++||||+++++|.++.+ +...|++||.|.|+|+++| +++|.||||++.
T Consensus 3 ~~~~vG~iv~G~V~~i~~~G~FV~l~~~~~Glihisel~~~~~~~--~~~~~~vGd~V~vkV~~vd~~~~kI~LSlk~~~ 80 (130)
T 2k4k_A 3 AKFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKD--INEHLSVGDEVQVKVLAVDEEKGKISLSIRATQ 80 (130)
T ss_dssp CCCCTTCEEEEEEEEEETTEEEEEEETTEEEEEEGGGTSSSCCSC--GGGTCCTTCEEEEEEEEEETTTTEEEEESHHHH
T ss_pred CcCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEHHHCCcccccC--ccccCCCCCEEEEEEEEEeCCCCEEEEEEeecc
Confidence 468999999999999999999999999999999999999988643 4788999999999999997 599999999999
Q ss_pred CCcCCc
Q 005707 336 DVGSNL 341 (681)
Q Consensus 336 ~DP~e~ 341 (681)
.+|+..
T Consensus 81 ~~p~~~ 86 (130)
T 2k4k_A 81 AAPEKK 86 (130)
T ss_dssp HSCCCC
T ss_pred cCcccc
Confidence 999763
No 19
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=1.5e-13 Score=125.76 Aligned_cols=85 Identities=21% Similarity=0.239 Sum_probs=75.1
Q ss_pred ccccCCccCcEEEEEEEEEecceEEEEeCC-CeEEEEeCCCCCcccccccCCCCcccCCCEEEEEEEEEeC----CeEEE
Q 005707 255 MKTTKFVKGQDLEGTVKNLTRSGAFISLPE-GEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISR----GQVTL 329 (681)
Q Consensus 255 ~~~sklkvGdIV~G~VknVt~~GaFVeIg~-GIeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL~IDk----gKI~L 329 (681)
.....+++|++|.|+|++|.+||+||+|++ +++||||+++++|.++.+ +...|++||.|.|+|+++|. +||.|
T Consensus 15 ~~~~~~~vG~iv~G~V~~I~~fGaFV~l~g~~~~Glvhisel~~~~~~~--~~~~~~~Gd~V~VkV~~vd~~~~~~~i~L 92 (119)
T 2cqo_A 15 TMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDK--PSEIVDVGDKVWVKLIGREMKNDRIKVSL 92 (119)
T ss_dssp CSCCSCCTTCEEEEEEEEEETTEEEEECTTCSSCEEEEHHHHCSSCCSC--HHHHCCTTCEEEEEEEEEEECSSCEEEEE
T ss_pred hhhcccCCCCEEEEEEEEEeCceEEEEECCCcEEEEEEHHHCCcccccC--hhhcCCCCCEEEEEEEEEeccccCceEEE
Confidence 566789999999999999999999999965 479999999999987543 36789999999999999972 59999
Q ss_pred EEeccCCCcCCc
Q 005707 330 TMKKEDDVGSNL 341 (681)
Q Consensus 330 SLK~~~~DP~e~ 341 (681)
|||+...+||+.
T Consensus 93 Slk~~~~~~~~~ 104 (119)
T 2cqo_A 93 SMKVVNQGTGKD 104 (119)
T ss_dssp ESTTBCSSSCCB
T ss_pred EEeecccCCccc
Confidence 999999999873
No 20
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=99.40 E-value=9e-13 Score=112.01 Aligned_cols=72 Identities=22% Similarity=0.408 Sum_probs=65.6
Q ss_pred CCccCcEEEEEEEEEecceEEEEeCCCeEEEEeCCCCCcccccccCCCCcccCCCEEEEEEEEEe--CCeEEEEEeccCC
Q 005707 259 KFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKKEDD 336 (681)
Q Consensus 259 klkvGdIV~G~VknVt~~GaFVeIg~GIeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL~ID--kgKI~LSLK~~~~ 336 (681)
++++|+++.|+|+++.++|+||+|+++++||||.++++|.++ ..|++||.|+|+|+++| ++|+.||+|+...
T Consensus 2 ~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gllh~sel~~~~~------~~~~~Gd~V~v~V~~vd~~~~~i~lsl~~~~~ 75 (80)
T 2k52_A 2 DVEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMISLRL------ENLNVGDEIIVQAIDVRPEKREIDFKYIPLEH 75 (80)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEETTEEEEECGGGCSSCCG------GGCCTTCEEEEEEEEEETTTTEEEEEECSCC-
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEECCCCEEEEEHHHCCcccc------eeeCCCCEEEEEEEEEECCCCEEEEEEeeccc
Confidence 578999999999999999999999999999999999998763 57999999999999997 4999999998753
No 21
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=99.40 E-value=4.4e-13 Score=130.49 Aligned_cols=96 Identities=19% Similarity=0.288 Sum_probs=75.3
Q ss_pred CCc-cCcEEEEEEEEEecceEEEEeC--CCeEEEEeCCCCCcccccccCCCCcccCCCEEEEEEEEEe--CCeEEEEEec
Q 005707 259 KFV-KGQDLEGTVKNLTRSGAFISLP--EGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKK 333 (681)
Q Consensus 259 klk-vGdIV~G~VknVt~~GaFVeIg--~GIeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL~ID--kgKI~LSLK~ 333 (681)
.|. +|+++.|+|++|++||+||+|. +|++||||+++++|.++. ++...|++||.|.|+|+++| ++||.||||+
T Consensus 11 ~~p~~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~~~v~--~~~~~~~vGd~V~vkVl~vd~~~~~I~LSlk~ 88 (175)
T 2a19_A 11 KYPEIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIR--SIQKLIRVGKNDVAVVLRVDKEKGYIDLSKRR 88 (175)
T ss_dssp SSCCTTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC----------CCCCCCCTTSEEEEEEEEEETTTTEEEEESTT
T ss_pred cCCCCCCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHHcCCcccC--CHHHcCCCCCEEEEEEEEEECCCCeEEEEEEe
Confidence 444 8999999999999999999994 799999999999998864 45899999999999999998 5899999999
Q ss_pred cCCCcCCc--------ceeeeEEEEeec-ccEE
Q 005707 334 EDDVGSNL--------QLTQGVIHAATN-PFVL 357 (681)
Q Consensus 334 ~~~DP~e~--------~lv~G~V~~~i~-~fGl 357 (681)
...+||.. +.+.|+|. .+. .||+
T Consensus 89 ~~~~~~~~~~~~~~~g~~v~g~V~-~i~~~~G~ 120 (175)
T 2a19_A 89 VSSEDIIKCEEKYQKSKTVHSILR-YCAEKFQI 120 (175)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTC
T ss_pred cCcChHHHHHHhccCCCcceEEEE-EchhhcCC
Confidence 99999873 33466666 444 6776
No 22
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=99.39 E-value=4.2e-13 Score=116.87 Aligned_cols=78 Identities=23% Similarity=0.306 Sum_probs=68.8
Q ss_pred cccCCccCcEEEEEEEEEecceEEEEeCC--CeEEEEeCC-CCCcccccccCCCCcccCCCEEEEEEEEEe--CCeEEEE
Q 005707 256 KTTKFVKGQDLEGTVKNLTRSGAFISLPE--GEEGFLPTS-EESDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLT 330 (681)
Q Consensus 256 ~~sklkvGdIV~G~VknVt~~GaFVeIg~--GIeGLLpiS-ELSd~~ie~~~p~~~fkVGqkVkVrVL~ID--kgKI~LS 330 (681)
.+...++|+++.|+|+ |++||+||+|.+ |++||+|++ +++|+++.+. ...| +||.|+|+|+++| ++||.||
T Consensus 5 ~y~~~~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~~~~~~~~--~~~~-~Gd~V~VkV~~vd~~~~kI~ls 80 (88)
T 1luz_A 5 CYSLPNAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHMDRYVEY--RDKL-VGKTVKVKVIRVDYTKGYIDVN 80 (88)
T ss_dssp CSCCCCTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCHHHHHHH--HHHH-TTCEEEEEEEEEETTTTEEEEE
T ss_pred EecCCCCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhCcccccCH--hHEe-CCCEEEEEEEEEECCCCEEEEE
Confidence 4667789999999999 999999999974 899999999 9999886543 5678 9999999999998 5899999
Q ss_pred EeccCCC
Q 005707 331 MKKEDDV 337 (681)
Q Consensus 331 LK~~~~D 337 (681)
||+..+|
T Consensus 81 lk~~~~~ 87 (88)
T 1luz_A 81 YKRMCRH 87 (88)
T ss_dssp EEEECSC
T ss_pred EeecCCC
Confidence 9998654
No 23
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=99.34 E-value=1.4e-13 Score=144.52 Aligned_cols=97 Identities=16% Similarity=0.249 Sum_probs=85.7
Q ss_pred CccCcEEEEEEEEEecceEEEEeC--CCeEEEEeCCCCCcccccccCCCCcccCCCEEEEEEEEEe--CCeEEEEEeccC
Q 005707 260 FVKGQDLEGTVKNLTRSGAFISLP--EGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKKED 335 (681)
Q Consensus 260 lkvGdIV~G~VknVt~~GaFVeIg--~GIeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL~ID--kgKI~LSLK~~~ 335 (681)
+++|+++.|+|++|.+||+||+|+ +|++||||+++++|.++. ++...|++||.|.|+|+++| +++|.||+|+..
T Consensus 11 ~~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~~~i~--~~~~~~kvGd~V~VkVl~vD~~~~rI~LSlK~~~ 88 (308)
T 1q8k_A 11 PEVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIR--SINKLIRIGRNECVKVIRVDKEKGYIDLSKRRVS 88 (308)
T ss_dssp CSSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSCSSCS--CCTTTCSSSCEEEEEEEEEETTTTEEEEECSSCC
T ss_pred CCCCCEEEEEEEEEeCcEEEEEECCCCCeEEEEEhHHcCccccc--CHHHhcCCCCEEEEEEEEEeCCCCEEEEEEEecc
Confidence 469999999999999999999998 699999999999998854 45899999999999999998 599999999999
Q ss_pred CCcCCc--------ceeeeEEEEeecc-cEEEE
Q 005707 336 DVGSNL--------QLTQGVIHAATNP-FVLAF 359 (681)
Q Consensus 336 ~DP~e~--------~lv~G~V~~~i~~-fGlfV 359 (681)
.+||.. +.+.|+|. .+.+ ||+|+
T Consensus 89 ~~p~~~~~~~~~~G~~v~G~V~-~v~~~~G~fi 120 (308)
T 1q8k_A 89 PEEAIKCEDKFTKSKTVYSILR-HVAEVLEYTK 120 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCCS
T ss_pred cChHHHHHHHccCCCeeEEEEE-EcccccCCcc
Confidence 999873 34567887 6777 59987
No 24
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=99.26 E-value=3.9e-12 Score=131.12 Aligned_cols=85 Identities=14% Similarity=0.373 Sum_probs=79.9
Q ss_pred CcCCCCCCcEEEEEEEEEecCeeEEEEC--CCeEEEEeccccCCccccCcccccccCCEEEEEEEEEeccCCceEEEEec
Q 005707 141 KNEDLIPGATFTGKVRSIQPFGAFIDFG--AFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRE 218 (681)
Q Consensus 141 t~~~LkvGdIVeGkV~sV~d~GaFVdLg--ggV~GLVPiSELS~~~v~d~~e~fkVGd~VkVkVl~VD~ekgrI~LSlK~ 218 (681)
....+++|++|.|+|+++.++|+||+|+ +++.||||+++++|+++.++.+.|++||.|.|+|+.+|.++++|.||+|.
T Consensus 5 ~~~~~~vG~iv~G~V~~I~~~GaFV~l~e~~~~~GlihiSels~~~v~~~~~~~~vGd~V~VkVi~vd~~~g~I~LSlk~ 84 (266)
T 3cw2_C 5 RSKLPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSLKK 84 (266)
T ss_dssp SSSSCCTTCEEEEEEEECCSSSBEEEETTTTSEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCCSSSCCCBEESTT
T ss_pred ccccCCCCCEEEEEEEEEeccEEEEEEcCCCCeEEEEEhHHcCcccccCHHHhCcCCCEEEEEEEEEeCCCCEEEEEEEe
Confidence 3457889999999999999999999997 77999999999999999999999999999999999999999999999999
Q ss_pred cchhhHh
Q 005707 219 SDDISKL 225 (681)
Q Consensus 219 l~~dp~e 225 (681)
...++|.
T Consensus 85 ~~~~~~~ 91 (266)
T 3cw2_C 85 VTDDERR 91 (266)
T ss_dssp SCTTHHH
T ss_pred cchhhHH
Confidence 9999984
No 25
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=99.21 E-value=3.5e-13 Score=155.91 Aligned_cols=134 Identities=24% Similarity=0.284 Sum_probs=52.6
Q ss_pred CCCCcEE--EEEEEE--EecCeeEEEECCCeEEEEeccccCCccccCcccccccCCEEEEEEEEEeccCCceEEEEeccc
Q 005707 145 LIPGATF--TGKVRS--IQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESD 220 (681)
Q Consensus 145 LkvGdIV--eGkV~s--V~d~GaFVdLgggV~GLVPiSELS~~~v~d~~e~fkVGd~VkVkVl~VD~ekgrI~LSlK~l~ 220 (681)
=++|+++ .|++.+ +.++|+||+|+. +|.++++..++.......+ +|. .+
T Consensus 607 ~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~--dG~v~Is~~~~~~~~~a~~--------------------~i~----~i- 659 (757)
T 1e3p_A 607 DKIGEVIGPKRQMINQIQEDTGAEITIED--DGTIYIGAADGPAAEAARA--------------------TIN----GI- 659 (757)
T ss_dssp --------------CTTCCCCCSCC----------CCCBSSHHHHCC---------------------------------
T ss_pred HHeehcccccceeeehhhHhhCCEEEecC--CceEEEecCCHHHHHHHHH--------------------HHH----Hh-
Confidence 3456665 355665 468999999986 8999999887654322110 000 00
Q ss_pred hhhHhhhhccccccCCccccccccCCCCCCccccccccCCccCcEEEEEEEEEecceEEEEeCCCeEEEEeCCCC----C
Q 005707 221 DISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEE----S 296 (681)
Q Consensus 221 ~dp~ek~~~~~p~s~d~~~~k~r~~~k~~~~k~~~~~sklkvGdIV~G~VknVt~~GaFVeIg~GIeGLLpiSEL----S 296 (681)
.+ ..++++|++|.|+|++|.+||+||+|.+|++||||++++ +
T Consensus 660 ~~----------------------------------p~~~~vG~i~~G~V~~i~~fGaFV~l~~g~eGLvHiSel~~~~s 705 (757)
T 1e3p_A 660 AN----------------------------------PTSPEVGERILGSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAG 705 (757)
T ss_dssp -----------------------------------------------CBEEECC-CSCEECCC---CCCCC---------
T ss_pred cc----------------------------------hhhcccccEEEEEEEEccccEEEEEEcCCcEEEEEhHHhccccC
Confidence 00 145889999999999999999999999999999999999 9
Q ss_pred cccccccCCCCcccCCCEEEEEEEEEe-CCeEEEEEeccCCCcCCc
Q 005707 297 DDGFANMMGGSSLQVGQEVSVRVLRIS-RGQVTLTMKKEDDVGSNL 341 (681)
Q Consensus 297 d~~ie~~~p~~~fkVGqkVkVrVL~ID-kgKI~LSLK~~~~DP~e~ 341 (681)
|.+++ ++...|++||.|+|+|+++| ++||.||||+...+||..
T Consensus 706 ~~rv~--~~~~~~~vGd~V~VkVi~vd~~grI~LS~k~~~~~pw~~ 749 (757)
T 1e3p_A 706 GKRVE--NVEDVLGVGQKVQVEIAEIDSRGKLSLIPVIEGEEAASD 749 (757)
T ss_dssp ------------CCSSCBCCCCCCCCCSSCC---------------
T ss_pred CCccc--CcccccCCCCEEEEEEEEECCCCCEEEEEecCCCCchhh
Confidence 98864 45889999999999999998 699999999999999973
No 26
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=99.20 E-value=2.1e-11 Score=126.29 Aligned_cols=96 Identities=25% Similarity=0.421 Sum_probs=82.7
Q ss_pred ccCcEEEEEEEEEecceEEEEeC--CCeEEEEeCCCCCcccccccCCCCcccCCCEEEEEEEEEe--CCeEEEEEeccCC
Q 005707 261 VKGQDLEGTVKNLTRSGAFISLP--EGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKKEDD 336 (681)
Q Consensus 261 kvGdIV~G~VknVt~~GaFVeIg--~GIeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL~ID--kgKI~LSLK~~~~ 336 (681)
++|+++.|+|++|.+||+||+|+ +|++||||+++++|.++.+ +...|++||.|.|+|+++| +++|.||||....
T Consensus 10 ~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~~v~~--~~~~~kvGd~V~vkVi~vD~~~~~I~LSlk~~~~ 87 (275)
T 3aev_A 10 EEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRN--IRDYLKEGQKVVAKVIRVDPRKGHIDLSLRRVTQ 87 (275)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSSCCSC--GGGTCCTTCEEEEEEEEEETTTTEEEEESTTCCH
T ss_pred CCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCcccccC--HHhccCCCCEEEEEEEEEECCCCEEEEEEeecCc
Confidence 48999999999999999999998 6999999999999988654 4789999999999999998 5999999999988
Q ss_pred CcCCc--------ceeeeEEEEeec-ccEEEE
Q 005707 337 VGSNL--------QLTQGVIHAATN-PFVLAF 359 (681)
Q Consensus 337 DP~e~--------~lv~G~V~~~i~-~fGlfV 359 (681)
+||.. +.+.|+|. .+. .||+++
T Consensus 88 ~~~~~~~~~~~~g~~v~g~v~-~v~~~~G~~~ 118 (275)
T 3aev_A 88 QQRKAKLQEFKRAQKAENLLR-LAAEKLGKDF 118 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHTCCH
T ss_pred chhHHHHHhccCCCeEEEEEE-EchhhcCCCH
Confidence 99862 33466766 455 888744
No 27
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.18 E-value=3.2e-11 Score=109.65 Aligned_cols=82 Identities=26% Similarity=0.381 Sum_probs=69.3
Q ss_pred CCcCCCCCCcEEEEEEEEEecCeeEEEEC-CCeEEEEecccc-CCccccCcccccccCCEEEEEEEEEeccCCceEEEEe
Q 005707 140 VKNEDLIPGATFTGKVRSIQPFGAFIDFG-AFTDGLVHVSRL-SDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMR 217 (681)
Q Consensus 140 lt~~~LkvGdIVeGkV~sV~d~GaFVdLg-ggV~GLVPiSEL-S~~~v~d~~e~fkVGd~VkVkVl~VD~ekgrI~LSlK 217 (681)
+.+.++++|++|.|+|++|.+||+||+|+ ++..|++|.++. .|.++.++.+.|++||.|+|+|+++|.++++|.||++
T Consensus 14 ~~~~~l~~G~i~~G~V~~v~~fG~fV~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~i~Lslk 93 (119)
T 1wi5_A 14 LSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVG 93 (119)
T ss_dssp CCTTTCCTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECCTTSCEEEEECC
T ss_pred ccHhcCCCCCEEEEEEEEEeCceEEEEECCCCeEEEEEEecccccccccCccCEeCCCCEEEEEEEEEeCCCCEEEEEEc
Confidence 34678999999999999999999999998 557777776664 2444557888999999999999999999999999999
Q ss_pred ccch
Q 005707 218 ESDD 221 (681)
Q Consensus 218 ~l~~ 221 (681)
+...
T Consensus 94 ~~~l 97 (119)
T 1wi5_A 94 HSEV 97 (119)
T ss_dssp CCCS
T ss_pred hhhc
Confidence 6544
No 28
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.13 E-value=7.3e-11 Score=107.29 Aligned_cols=79 Identities=25% Similarity=0.409 Sum_probs=65.7
Q ss_pred ccccCCccCcEEEEEEEEEecceEEEEeC-CCeEEEEeCCCC-CcccccccCCCCcccCCCEEEEEEEEEe--CCeEEEE
Q 005707 255 MKTTKFVKGQDLEGTVKNLTRSGAFISLP-EGEEGFLPTSEE-SDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLT 330 (681)
Q Consensus 255 ~~~sklkvGdIV~G~VknVt~~GaFVeIg-~GIeGLLpiSEL-Sd~~ie~~~p~~~fkVGqkVkVrVL~ID--kgKI~LS 330 (681)
..+.++++|+++.|+|++|.+||+||+|+ +++.||+|.++. .|.++ .++...|++||.|+|+|+++| ++|+.|+
T Consensus 14 ~~~~~l~~G~i~~G~V~~v~~fG~fV~l~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~Gd~V~vkV~~vd~~~~~i~Ls 91 (119)
T 1wi5_A 14 LSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQ--KNKGAKLKVGQYLNCIVEKVKGNGGVVSLS 91 (119)
T ss_dssp CCTTTCCTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHHHHHHHH--HSSSCCCCTTCEEEEEEEECCTTSCEEEEE
T ss_pred ccHhcCCCCCEEEEEEEEEeCceEEEEECCCCeEEEEEEecccccccc--cCccCEeCCCCEEEEEEEEEeCCCCEEEEE
Confidence 45788999999999999999999999999 578888776654 23222 245789999999999999997 4899999
Q ss_pred EeccC
Q 005707 331 MKKED 335 (681)
Q Consensus 331 LK~~~ 335 (681)
+|+..
T Consensus 92 lk~~~ 96 (119)
T 1wi5_A 92 VGHSE 96 (119)
T ss_dssp CCCCC
T ss_pred Echhh
Confidence 99864
No 29
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=99.12 E-value=6e-12 Score=145.14 Aligned_cols=83 Identities=29% Similarity=0.500 Sum_probs=0.0
Q ss_pred ccCCccCcEEEEEEEEEecceEEEEeCCCeEEEEeCCCCCcccccccCCCCcccCCCEEEEEEEEEe-CCeEEEEEeccC
Q 005707 257 TTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRIS-RGQVTLTMKKED 335 (681)
Q Consensus 257 ~sklkvGdIV~G~VknVt~~GaFVeIg~GIeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL~ID-kgKI~LSLK~~~ 335 (681)
..++++|++|.|+|++|.+||+||+|.+|++||||+++++|.++. ++...|++||.|+|+|+++| ++||.||||...
T Consensus 622 ~~~~~vG~i~~G~V~~i~~fGaFVel~~g~eGLvHiSel~~~~v~--~~~~~~~vGd~V~VkVi~vd~~grI~LS~k~~~ 699 (723)
T 3cdi_A 622 TAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE--KVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEAT 699 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhcCcEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCcccc--CcccccCCCCEEEEEEEEECCCCcEEEEEEecc
Confidence 457889999999999999999999999999999999999998864 45889999999999999998 699999999998
Q ss_pred CCcCCc
Q 005707 336 DVGSNL 341 (681)
Q Consensus 336 ~DP~e~ 341 (681)
++|+..
T Consensus 700 ~~~g~~ 705 (723)
T 3cdi_A 700 EQSQPA 705 (723)
T ss_dssp ------
T ss_pred CCCCcc
Confidence 888764
No 30
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=99.07 E-value=2.6e-11 Score=124.95 Aligned_cols=82 Identities=32% Similarity=0.413 Sum_probs=74.2
Q ss_pred cCCccCcEEEEEEEEEecceEEEEeC--CCeEEEEeCCCCCcccccccCCCCcccCCCEEEEEEEEEe--CCeEEEEEec
Q 005707 258 TKFVKGQDLEGTVKNLTRSGAFISLP--EGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKK 333 (681)
Q Consensus 258 sklkvGdIV~G~VknVt~~GaFVeIg--~GIeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL~ID--kgKI~LSLK~ 333 (681)
..+++|+++.|+|++|.+||+||+|+ +|++||||.++++|.++.+ +...|++||.|.|+|+++| ++++.||+|.
T Consensus 7 ~~~~vG~iv~G~V~~I~~~GaFV~l~e~~~~~GlihiSels~~~v~~--~~~~~~vGd~V~VkVi~vd~~~g~I~LSlk~ 84 (266)
T 3cw2_C 7 KLPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKN--IRDVLKENRKVIVKVIRVDRRKGTVDVSLKK 84 (266)
T ss_dssp SSCCTTCEEEEEEEECCSSSBEEEETTTTSEECBBCGGGSSCSSCCC--HHHHSCTTCEEEEEECCCCSSSCCCBEESTT
T ss_pred ccCCCCCEEEEEEEEEeccEEEEEEcCCCCeEEEEEhHHcCcccccC--HHHhCcCCCEEEEEEEEEeCCCCEEEEEEEe
Confidence 45689999999999999999999997 7999999999999988643 4678999999999999997 5999999999
Q ss_pred cCCCcCCc
Q 005707 334 EDDVGSNL 341 (681)
Q Consensus 334 ~~~DP~e~ 341 (681)
...+||..
T Consensus 85 ~~~~~~~~ 92 (266)
T 3cw2_C 85 VTDDERRK 92 (266)
T ss_dssp SCTTHHHH
T ss_pred cchhhHHH
Confidence 99999863
No 31
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=99.05 E-value=2.7e-10 Score=137.34 Aligned_cols=81 Identities=10% Similarity=0.145 Sum_probs=76.4
Q ss_pred CcCCCCCCcEEEEEEEEEecCeeEEEECCCeEEEEeccccCCcc-ccCcccccccCCEEEEEEEEEeccCCceEEEEecc
Q 005707 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNF-VKDVGSIVSVGQEVKVRLIEANAETGRISLTMRES 219 (681)
Q Consensus 141 t~~~LkvGdIVeGkV~sV~d~GaFVdLgggV~GLVPiSELS~~~-v~d~~e~fkVGd~VkVkVl~VD~ekgrI~LSlK~l 219 (681)
+..++++|++|.|+|++|.+||+||+|+.+++||||+++|++++ +.++.+.|++||.|+|+|+.+|.++++|.||+|..
T Consensus 896 t~~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~~ 975 (1219)
T 3psi_A 896 SEKTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLDH 975 (1219)
T ss_dssp CTTTSCTTCEEEEEEEEECSSCEEEECTTSCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEEEGGGTEEEEECCHH
T ss_pred cHhhCCCCCEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEecHH
Confidence 45899999999999999999999999998899999999999998 79999999999999999999999999999999965
Q ss_pred ch
Q 005707 220 DD 221 (681)
Q Consensus 220 ~~ 221 (681)
..
T Consensus 976 dl 977 (1219)
T 3psi_A 976 DV 977 (1219)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 32
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=99.03 E-value=6.5e-10 Score=108.07 Aligned_cols=79 Identities=29% Similarity=0.543 Sum_probs=70.2
Q ss_pred cCCCCCCcEEEEEEEEEecCeeEEEECCCeEEEEeccccCCcccc-----------CcccccccCCEEEEEEEEEeccCC
Q 005707 142 NEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVK-----------DVGSIVSVGQEVKVRLIEANAETG 210 (681)
Q Consensus 142 ~~~LkvGdIVeGkV~sV~d~GaFVdLgggV~GLVPiSELS~~~v~-----------d~~e~fkVGd~VkVkVl~VD~ekg 210 (681)
+...++|+++.|+|+++.++|+||+|++ .+||||+++++++++. ++...|++||.|+|+|+++|...+
T Consensus 76 ~~~~~~Gev~~G~V~~v~~~G~fV~l~~-~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~ 154 (187)
T 1go3_E 76 VYIPEMYELIEGEVVDVVEFGSFVRLGP-LDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAE 154 (187)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEECSS-SEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEECCC-
T ss_pred EEccCCCCEEEEEEEEEeCcEEEEEEcC-ccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEEEEEEcccC
Confidence 3568899999999999999999999977 9999999999988765 778899999999999999998755
Q ss_pred -----ceEEEEeccch
Q 005707 211 -----RISLTMRESDD 221 (681)
Q Consensus 211 -----rI~LSlK~l~~ 221 (681)
+|.||++....
T Consensus 155 ~p~~~~I~lS~k~~~L 170 (187)
T 1go3_E 155 RKRGSKIALTMRQPYL 170 (187)
T ss_dssp ----CEEEEECCSTTC
T ss_pred CCCccEEEEEEcCCCC
Confidence 99999997443
No 33
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=99.01 E-value=3.1e-11 Score=139.00 Aligned_cols=84 Identities=27% Similarity=0.398 Sum_probs=0.0
Q ss_pred ccccCCccCcEEEEEEEEEecceEEEEeCCCeEEEEeCCCCCcccccccCCCCcccCCCEEEEEEEEEe-CCeEEEEEec
Q 005707 255 MKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRIS-RGQVTLTMKK 333 (681)
Q Consensus 255 ~~~sklkvGdIV~G~VknVt~~GaFVeIg~GIeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL~ID-kgKI~LSLK~ 333 (681)
....++++|++|.|+|++|.+||+||+|.+|++||||+++++|.++. ++...|++||.|+|+|+++| ++||.||||+
T Consensus 630 ~i~~~~~vG~v~~G~V~~I~~fGaFVel~~g~eGLvHiSels~~rv~--~~~d~~kvGD~V~VkVi~iD~~grI~LS~K~ 707 (726)
T 4aid_A 630 SITDEAEVGKIYDGKVVKVVDFGAFVNFFGAKDGLVHVSQISNERVA--KPSDVLKEGQMVKVKLLGFDDRGKTKLSMKV 707 (726)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhhhhcCCcEEEEEEEEEeccEEEEEECCCcEEEEEHHHcCccccc--CccccCCCCCEEEEEEEEECCCCcEEEEEee
Confidence 45678999999999999999999999999999999999999999875 45889999999999999998 6999999999
Q ss_pred cCCCcCC
Q 005707 334 EDDVGSN 340 (681)
Q Consensus 334 ~~~DP~e 340 (681)
..++|+.
T Consensus 708 ~~~~~G~ 714 (726)
T 4aid_A 708 VDQETGE 714 (726)
T ss_dssp -------
T ss_pred cccCcch
Confidence 9888865
No 34
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=99.01 E-value=3.5e-11 Score=138.65 Aligned_cols=82 Identities=34% Similarity=0.574 Sum_probs=0.0
Q ss_pred cCCCCCCcEEEEEEEEEecCeeEEEECCCeEEEEeccccCCccccCcccccccCCEEEEEEEEEeccCCceEEEEeccch
Q 005707 142 NEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDD 221 (681)
Q Consensus 142 ~~~LkvGdIVeGkV~sV~d~GaFVdLgggV~GLVPiSELS~~~v~d~~e~fkVGd~VkVkVl~VD~ekgrI~LSlK~l~~ 221 (681)
...+++|++|.|+|++|.+||+||+|.++++||||+++++|+++.++.+.|++||.|+|+|+++|+ +++|.||+|.+.+
T Consensus 632 ~~~~~vG~v~~G~V~~I~~fGaFVel~~g~eGLvHiSels~~rv~~~~d~~kvGD~V~VkVi~iD~-~grI~LS~K~~~~ 710 (726)
T 4aid_A 632 TDEAEVGKIYDGKVVKVVDFGAFVNFFGAKDGLVHVSQISNERVAKPSDVLKEGQMVKVKLLGFDD-RGKTKLSMKVVDQ 710 (726)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhcCCcEEEEEEEEEeccEEEEEECCCcEEEEEHHHcCcccccCccccCCCCCEEEEEEEEECC-CCcEEEEEeeccc
Confidence 468899999999999999999999998889999999999999999999999999999999999998 7999999999988
Q ss_pred hhH
Q 005707 222 ISK 224 (681)
Q Consensus 222 dp~ 224 (681)
+++
T Consensus 711 ~~G 713 (726)
T 4aid_A 711 ETG 713 (726)
T ss_dssp ---
T ss_pred Ccc
Confidence 877
No 35
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=98.99 E-value=1.4e-10 Score=134.64 Aligned_cols=80 Identities=44% Similarity=0.733 Sum_probs=75.8
Q ss_pred CCcCCCCCCcEEEEEEEEEecCeeEEEECCCeEEEEeccccCCccccCcccccccCCEEEEEEEEEeccCCceEEEEecc
Q 005707 140 VKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRES 219 (681)
Q Consensus 140 lt~~~LkvGdIVeGkV~sV~d~GaFVdLgggV~GLVPiSELS~~~v~d~~e~fkVGd~VkVkVl~VD~ekgrI~LSlK~l 219 (681)
.++.++++|++|.|+|++|.+||+||+|+.+++||||+++|+|.++.++.+.|++||.|+|+|+++|.++++|.||+|..
T Consensus 647 e~~~~l~vG~iv~G~V~~V~~fGaFV~l~~~~eGLVhiS~Lsd~~v~d~~~~~~vGd~V~VkVi~VD~~~~rI~LSlk~~ 726 (785)
T 3bzc_A 647 ESLKDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLSMRMS 726 (785)
T ss_dssp CSSTTCCTTCBCCCEEEEEETTEEEEECSSSSEEEEETTTSCSSCCSCHHHHCCTTCCCCCBEEEEETTTTEEEECCSSC
T ss_pred cchhhcCCCCEEEEEEEEEecCCeEEEeCCCcEEEEEHHHcCccccCChhheeCCCCEEEEEEEEEECCCCEEEEEEecC
Confidence 45778999999999999999999999999889999999999999999999999999999999999999999999999854
No 36
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=98.99 E-value=7.9e-11 Score=134.45 Aligned_cols=149 Identities=9% Similarity=0.006 Sum_probs=102.7
Q ss_pred ccccceeeecccccccccceeEEeccCCceeEEeCcccCcccccccchhhcccceeEEEEEecCCCCCCCCcceecCCCC
Q 005707 26 NCLTRYNSTRKSTKQTISSQRFLLPLPSSVRFFSQFQSGSALQHKSALHIISATGINVAVEESDSPAADDDSAGASDIPS 105 (681)
Q Consensus 26 ~~~~~~~~~r~~~~~~~s~~~l~~dl~glrGfIP~sq~~~~~~~~~~~~~lvG~~i~VkVievD~~~~~~~~lvlSer~s 105 (681)
.+.+||||+-.+|.|||||.|++.|+-.+|- |-+...+ .... .. .. .
T Consensus 480 ~~~~HfgLa~~~YthfTSPIRRY~DLivHR~-l~a~l~~--------------~~~~----~~---~~---~-------- 526 (644)
T 2id0_A 480 EPGPHFGLGLEAYATWTSPIRKYGDMINHRL-LKAVIKG--------------ETAT----RP---QD---E-------- 526 (644)
T ss_dssp SCCCBTTTTBSSCBCCSCTTTBHHHHHHHHH-HHHHTTC----------------------CC---CT---T--------
T ss_pred CCCCchhcCCCceeeeCChhhcchHHHHHHH-HHHHHcC--------------CCCC----cc---HH---H--------
Confidence 4678999999999999999999999877742 2222111 1000 00 00 1
Q ss_pred CcccccccccccCCChhhHHhhhchhhhhcCCCCCCcCCCCCCc--EEEEEEEEEecCeeEEEE-CCCeEEEEeccccCC
Q 005707 106 DVETSESSSIKSEASPTLAESRRSRTARKSEMPPVKNEDLIPGA--TFTGKVRSIQPFGAFIDF-GAFTDGLVHVSRLSD 182 (681)
Q Consensus 106 ~v~~ae~ss~~sea~~daek~~~kr~~rk~e~~~lt~~~LkvGd--IVeGkV~sV~d~GaFVdL-gggV~GLVPiSELS~ 182 (681)
..++.+.+.+.+.++++...+.. ... +..-++|+ +++|+|++|.++|+||.| ..+++||||+++|.+
T Consensus 527 ---~~~~~s~~er~a~~aer~~~~~~--~~~-----~l~~~vGe~~~f~g~V~~V~~~G~fV~L~~~gieGlVhis~l~~ 596 (644)
T 2id0_A 527 ---ITVQMAERRRLNRMAERDVGDWL--YAR-----FLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHA 596 (644)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHH--HHH-----HHGGGTTSCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCS
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHH--HHH-----HhhhccCCCceEEEEEEEEeCCceEEEEcCCcEEEEEEchhccC
Confidence 12234444555555554433311 111 33456799 999999999999999999 467999999999974
Q ss_pred --ccc-c---------CcccccccCCEEEEEEEEEeccCCceEEEEe
Q 005707 183 --NFV-K---------DVGSIVSVGQEVKVRLIEANAETGRISLTMR 217 (681)
Q Consensus 183 --~~v-~---------d~~e~fkVGd~VkVkVl~VD~ekgrI~LSlK 217 (681)
+++ . +....|++||.|+|+|+.+|..+++|.|++.
T Consensus 597 ~~d~~~~d~~~~~l~~~~~~~~~lGD~V~VkV~~vd~~~~~I~~~l~ 643 (644)
T 2id0_A 597 VRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPV 643 (644)
T ss_dssp CGGGEEEETTTTEEEETTEEEEETTCEEEEEEEEEETTTTEEEEEEC
T ss_pred cCceeEEcccccEEEecCCCEeCCCCEEEEEEEEEeCCCCEEEEEEc
Confidence 331 1 3456799999999999999999999999874
No 37
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=98.97 E-value=6.1e-11 Score=136.83 Aligned_cols=82 Identities=38% Similarity=0.698 Sum_probs=0.0
Q ss_pred cCCCCCCcEEEEEEEEEecCeeEEEECCCeEEEEeccccCCccccCcccccccCCEEEEEEEEEeccCCceEEEEeccch
Q 005707 142 NEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDD 221 (681)
Q Consensus 142 ~~~LkvGdIVeGkV~sV~d~GaFVdLgggV~GLVPiSELS~~~v~d~~e~fkVGd~VkVkVl~VD~ekgrI~LSlK~l~~ 221 (681)
...+++|++|.|+|+++.+||+||+|.++++||||+++++|+++.++.+.|++||.|+|+|+++|. +++|.||+|.+..
T Consensus 622 ~~~~~vG~i~~G~V~~i~~fGaFVel~~g~eGLvHiSel~~~~v~~~~~~~~vGd~V~VkVi~vd~-~grI~LS~k~~~~ 700 (723)
T 3cdi_A 622 TAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATE 700 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhcCcEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCccccCcccccCCCCEEEEEEEEECC-CCcEEEEEEeccC
Confidence 467899999999999999999999998889999999999999999999999999999999999998 8999999999888
Q ss_pred hhH
Q 005707 222 ISK 224 (681)
Q Consensus 222 dp~ 224 (681)
++|
T Consensus 701 ~~g 703 (723)
T 3cdi_A 701 QSQ 703 (723)
T ss_dssp ---
T ss_pred CCC
Confidence 887
No 38
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=98.95 E-value=2.3e-09 Score=103.71 Aligned_cols=77 Identities=29% Similarity=0.586 Sum_probs=67.3
Q ss_pred cCCCCCCcEEEEEEEEEecCeeEEEECCCeEEEEeccccCCccc-----------cCcccccccCCEEEEEEEEEecc--
Q 005707 142 NEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFV-----------KDVGSIVSVGQEVKVRLIEANAE-- 208 (681)
Q Consensus 142 ~~~LkvGdIVeGkV~sV~d~GaFVdLgggV~GLVPiSELS~~~v-----------~d~~e~fkVGd~VkVkVl~VD~e-- 208 (681)
.....+|++++|+|++++++|+||++++ .+||+|++++.++++ .+....|++||.|+|+|+++|.+
T Consensus 76 v~~p~~Gev~~G~V~~v~~~G~fv~l~~-~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~~v~~~~~ 154 (180)
T 4ayb_E 76 TYVPVVQEVVEGEVLQVDNYGVFVNLGP-MDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVASTVT 154 (180)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEECSS-SEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEEEEEECC---
T ss_pred eeeccCCCEEEEEEeeeccceEEEEECC-ccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEEEEEEeCCCC
Confidence 4578899999999999999999999976 899999999999876 46777899999999999999864
Q ss_pred --CCceEEEEecc
Q 005707 209 --TGRISLTMRES 219 (681)
Q Consensus 209 --kgrI~LSlK~l 219 (681)
..+|.||||+.
T Consensus 155 ~~~~rI~ls~k~~ 167 (180)
T 4ayb_E 155 GRLPRIALTMRQP 167 (180)
T ss_dssp ----CEEEECCST
T ss_pred cccCcEEEEcCCC
Confidence 35899999974
No 39
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=98.95 E-value=3.2e-11 Score=139.67 Aligned_cols=82 Identities=28% Similarity=0.460 Sum_probs=38.4
Q ss_pred CCCCCCcEEEEEEEEEecCeeEEEECCCeEEEEecccc----CCccccCcccccccCCEEEEEEEEEeccCCceEEEEec
Q 005707 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRL----SDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRE 218 (681)
Q Consensus 143 ~~LkvGdIVeGkV~sV~d~GaFVdLgggV~GLVPiSEL----S~~~v~d~~e~fkVGd~VkVkVl~VD~ekgrI~LSlK~ 218 (681)
..+++|++|.|+|+++.+||+||+|.++++||||++++ +|+++.++.+.|++||.|+|+|+++|. +++|.||+|.
T Consensus 663 ~~~~vG~i~~G~V~~i~~fGaFV~l~~g~eGLvHiSel~~~~s~~rv~~~~~~~~vGd~V~VkVi~vd~-~grI~LS~k~ 741 (757)
T 1e3p_A 663 TSPEVGERILGSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDS-RGKLSLIPVI 741 (757)
T ss_dssp ----------CBEEECC-CSCEECCC---CCCCC-------------------CCSSCBCCCCCCCCCS-SCC-------
T ss_pred hhcccccEEEEEEEEccccEEEEEEcCCcEEEEEhHHhccccCCCcccCcccccCCCCEEEEEEEEECC-CCCEEEEEec
Confidence 57899999999999999999999998889999999999 999999999999999999999999998 9999999999
Q ss_pred cchhhHh
Q 005707 219 SDDISKL 225 (681)
Q Consensus 219 l~~dp~e 225 (681)
+..+||.
T Consensus 742 ~~~~pw~ 748 (757)
T 1e3p_A 742 EGEEAAS 748 (757)
T ss_dssp -------
T ss_pred CCCCchh
Confidence 9999994
No 40
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=98.94 E-value=1.4e-09 Score=131.26 Aligned_cols=79 Identities=11% Similarity=0.188 Sum_probs=71.5
Q ss_pred cccCCccCcEEEEEEEEEecceEEEEeCCCeEEEEeCCCCCcccccccCCCCcccCCCEEEEEEEEEe--CCeEEEEEec
Q 005707 256 KTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKK 333 (681)
Q Consensus 256 ~~sklkvGdIV~G~VknVt~~GaFVeIg~GIeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL~ID--kgKI~LSLK~ 333 (681)
...++++|++|.|+|++|++||+||+|+.|++||||+++++|.++ ..++...|++||.|+|+|++|| ++||.||||.
T Consensus 896 t~~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~-v~~p~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~ 974 (1219)
T 3psi_A 896 SEKTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQL-RRPANEIYEIGKTYPAKVIYIDYANITAEVSLLD 974 (1219)
T ss_dssp CTTTSCTTCEEEEEEEEECSSCEEEECTTSCEEEECTTSSSSTTS-CSCSTTTSCTTCEEEEEEEEEEGGGTEEEEECCH
T ss_pred cHhhCCCCCEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCCcc-cCCHHHcCCCCCEEEEEEEEEECCCCEEEEEecH
Confidence 458999999999999999999999999999999999999999872 1346899999999999999998 6999999997
Q ss_pred cC
Q 005707 334 ED 335 (681)
Q Consensus 334 ~~ 335 (681)
..
T Consensus 975 ~d 976 (1219)
T 3psi_A 975 HD 976 (1219)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 41
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=98.89 E-value=1.7e-10 Score=137.29 Aligned_cols=82 Identities=10% Similarity=0.135 Sum_probs=0.4
Q ss_pred CcCCCCCCcEEEEEEEEEecCeeEEEECCCeEEEEeccccCCcc-ccCcccccccCCEEEEEEEEEeccCCceEEEEecc
Q 005707 141 KNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNF-VKDVGSIVSVGQEVKVRLIEANAETGRISLTMRES 219 (681)
Q Consensus 141 t~~~LkvGdIVeGkV~sV~d~GaFVdLgggV~GLVPiSELS~~~-v~d~~e~fkVGd~VkVkVl~VD~ekgrI~LSlK~l 219 (681)
+..++++|++|.|+|++|.+||+||+|+.+++||||+++|++.+ +.++.+.|++||.|+|+|+.+|.++++|.||+|..
T Consensus 899 t~~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~~~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~~ 978 (1030)
T 3psf_A 899 SEKTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLDH 978 (1030)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred cHHHhcCCCEEEEEEEEEccCeEEEEeCCCcEEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEechH
Confidence 34789999999999999999999999998899999999999998 89999999999999999999999999999999976
Q ss_pred chh
Q 005707 220 DDI 222 (681)
Q Consensus 220 ~~d 222 (681)
...
T Consensus 979 dl~ 981 (1030)
T 3psf_A 979 DVK 981 (1030)
T ss_dssp ---
T ss_pred Hhc
Confidence 553
No 42
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=98.88 E-value=3e-09 Score=106.16 Aligned_cols=77 Identities=19% Similarity=0.075 Sum_probs=70.3
Q ss_pred CCCCCCcEEEEEEEEEecCeeEEEEC--------CCeEEEEeccccCCcccc--CcccccccCCEEEEEEEEEeccCCce
Q 005707 143 EDLIPGATFTGKVRSIQPFGAFIDFG--------AFTDGLVHVSRLSDNFVK--DVGSIVSVGQEVKVRLIEANAETGRI 212 (681)
Q Consensus 143 ~~LkvGdIVeGkV~sV~d~GaFVdLg--------ggV~GLVPiSELS~~~v~--d~~e~fkVGd~VkVkVl~VD~ekgrI 212 (681)
..+++|++|.|+|+++.++|+||+|+ .+.+|+||++++++.+.. ++.+.|++||.|+|+|++++..++++
T Consensus 77 y~p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akVisi~~~~~~i 156 (209)
T 2nn6_I 77 LLPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNY 156 (209)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETTTTEE
T ss_pred CCCCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEEEEEeCCCCeE
Confidence 36899999999999999999999985 357999999999998887 89999999999999999999877899
Q ss_pred EEEEecc
Q 005707 213 SLTMRES 219 (681)
Q Consensus 213 ~LSlK~l 219 (681)
.||+|..
T Consensus 157 ~LS~k~~ 163 (209)
T 2nn6_I 157 LLTTAEN 163 (209)
T ss_dssp EEECCSS
T ss_pred EEEEecC
Confidence 9999964
No 43
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=98.88 E-value=4.7e-09 Score=101.99 Aligned_cols=81 Identities=25% Similarity=0.299 Sum_probs=68.0
Q ss_pred ccCCccCcEEEEEEEEEecceEEEEeCCCeEEEEeCCCCCcccccc---------cCCCCcccCCCEEEEEEEEEeC---
Q 005707 257 TTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFAN---------MMGGSSLQVGQEVSVRVLRISR--- 324 (681)
Q Consensus 257 ~sklkvGdIV~G~VknVt~~GaFVeIg~GIeGLLpiSELSd~~ie~---------~~p~~~fkVGqkVkVrVL~IDk--- 324 (681)
..+..+|+++.|+|++++++|+||+|+ +++||+|.+++.+.++.. .++...|++||.|+|+|+++|.
T Consensus 76 ~~~~~~Gev~~G~V~~v~~~G~fV~l~-~~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~ 154 (187)
T 1go3_E 76 VYIPEMYELIEGEVVDVVEFGSFVRLG-PLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAE 154 (187)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEECS-SSEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEECCC-
T ss_pred EEccCCCCEEEEEEEEEeCcEEEEEEc-CccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEEEEEEcccC
Confidence 456789999999999999999999997 499999999999876531 1346889999999999999973
Q ss_pred ----CeEEEEEeccCCCc
Q 005707 325 ----GQVTLTMKKEDDVG 338 (681)
Q Consensus 325 ----gKI~LSLK~~~~DP 338 (681)
+++.||||.....+
T Consensus 155 ~p~~~~I~lS~k~~~LG~ 172 (187)
T 1go3_E 155 RKRGSKIALTMRQPYLGK 172 (187)
T ss_dssp ----CEEEEECCSTTCEE
T ss_pred CCCccEEEEEEcCCCCCc
Confidence 49999999864333
No 44
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=98.83 E-value=1.3e-09 Score=126.67 Aligned_cols=79 Identities=28% Similarity=0.408 Sum_probs=71.3
Q ss_pred ccccCCccCcEEEEEEEEEecceEEEEeCCCeEEEEeCCCCCcccccccCCCCcccCCCEEEEEEEEEe--CCeEEEEEe
Q 005707 255 MKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMK 332 (681)
Q Consensus 255 ~~~sklkvGdIV~G~VknVt~~GaFVeIg~GIeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL~ID--kgKI~LSLK 332 (681)
..+.++++|+++.|+|++|++||+||+|+.+++||||+++++|.++. ++...|++||.|+|+|+++| +++|.||||
T Consensus 647 e~~~~l~vG~iv~G~V~~V~~fGaFV~l~~~~eGLVhiS~Lsd~~v~--d~~~~~~vGd~V~VkVi~VD~~~~rI~LSlk 724 (785)
T 3bzc_A 647 ESLKDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVK--DPYEVVKAGDIVKVKVMEVDIPRNRVGLSMR 724 (785)
T ss_dssp CSSTTCCTTCBCCCEEEEEETTEEEEECSSSSEEEEETTTSCSSCCS--CHHHHCCTTCCCCCBEEEEETTTTEEEECCS
T ss_pred cchhhcCCCCEEEEEEEEEecCCeEEEeCCCcEEEEEHHHcCccccC--ChhheeCCCCEEEEEEEEEECCCCEEEEEEe
Confidence 56778999999999999999999999999999999999999997753 45788999999999999998 599999998
Q ss_pred ccC
Q 005707 333 KED 335 (681)
Q Consensus 333 ~~~ 335 (681)
...
T Consensus 725 ~~~ 727 (785)
T 3bzc_A 725 MSD 727 (785)
T ss_dssp SCC
T ss_pred cCC
Confidence 653
No 45
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=98.83 E-value=7.3e-09 Score=100.84 Aligned_cols=70 Identities=24% Similarity=0.403 Sum_probs=65.6
Q ss_pred CCCCCcEEEEEEEEEecCeeEEEECC----------CeEEEEeccccCCccccCcccccccCCEEEEEEEEEeccCCceE
Q 005707 144 DLIPGATFTGKVRSIQPFGAFIDFGA----------FTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRIS 213 (681)
Q Consensus 144 ~LkvGdIVeGkV~sV~d~GaFVdLgg----------gV~GLVPiSELS~~~v~d~~e~fkVGd~VkVkVl~VD~ekgrI~ 213 (681)
..+ |++|.|+|+++.++|+||+|.. +.+|+||++++++.++.++.+.|++||.|+|+|++ +++.
T Consensus 55 ~p~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~-----~~i~ 128 (179)
T 3m7n_A 55 IVK-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARVIG-----DNLR 128 (179)
T ss_dssp CCT-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE-----TTTE
T ss_pred cCC-CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC-----CeEE
Confidence 467 9999999999999999999976 79999999999999999999999999999999997 8999
Q ss_pred EEEecc
Q 005707 214 LTMRES 219 (681)
Q Consensus 214 LSlK~l 219 (681)
||+|..
T Consensus 129 LS~k~~ 134 (179)
T 3m7n_A 129 LSTKEE 134 (179)
T ss_dssp EECCST
T ss_pred EEEecC
Confidence 999964
No 46
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=98.82 E-value=5.6e-09 Score=111.24 Aligned_cols=113 Identities=18% Similarity=0.090 Sum_probs=81.9
Q ss_pred hhhcccceeEEEEEecCCCCCCCCcceecCCCCCcccccccccccCCChhhHHhhhchhhhhcCCCCCCcCCCC--CCcE
Q 005707 73 LHIISATGINVAVEESDSPAADDDSAGASDIPSDVETSESSSIKSEASPTLAESRRSRTARKSEMPPVKNEDLI--PGAT 150 (681)
Q Consensus 73 ~~~lvG~~i~VkVievD~~~~~~~~lvlSer~s~v~~ae~ss~~sea~~daek~~~kr~~rk~e~~~lt~~~Lk--vGdI 150 (681)
....+|+.+.+.|...|..+. .+. ..+.......+..+...+ +..++ .|++
T Consensus 85 ~~~~vGd~ie~~I~~~dfgR~----aa~----------------------~aKqvi~qkireaere~i-~~e~~~~~GeI 137 (344)
T 1hh2_P 85 PLAEVGSIVKKELNVKNFGRI----AAQ----------------------TAKQVLIQRIRELEKEKQ-FEKYSELKGTV 137 (344)
T ss_dssp TTCCTTCEEEEECCCCCSSSC----SGG----------------------GHHHHHHHHHHHHTTCCS-SCCTTCCTTCE
T ss_pred ccccCCCEEEEEEccccCccH----HHH----------------------HHHHHHHHHHHHHHHHHH-HHHHhhcCCCE
Confidence 345689999999987765433 111 112222122333333222 45555 8999
Q ss_pred EEEEEEEEecCeeEEEECCCeEEEEeccccCCccccCcccccccCCEEEEEEEEEeccCC--ceEEEEecc
Q 005707 151 FTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETG--RISLTMRES 219 (681)
Q Consensus 151 VeGkV~sV~d~GaFVdLgggV~GLVPiSELS~~~v~d~~e~fkVGd~VkVkVl~VD~ekg--rI~LSlK~l 219 (681)
++|+|.++.++|+||++| +.+|+||.+++. +.+.|++||.|+|+|+.++++++ +|.||++..
T Consensus 138 V~G~V~ri~~~~v~VDlG-k~EgiLp~sE~i------p~E~~~vGD~Vkv~V~~V~~~~kg~~I~LSRt~p 201 (344)
T 1hh2_P 138 TTAEVIRVMGEWADIRIG-KLETRLPKKEWI------PGEEIKAGDLVKVYIIDVVKTTKGPKILVSRRVP 201 (344)
T ss_dssp EEEEEEEECSSEEEEEET-TEEEEEEGGGSC------TTCCCCTTCEEEEEEEEEEEETTEEEEEEESSSH
T ss_pred EEEEEEEEecCcEEEEeC-CeEEEEeHHHcC------CCcCCCCCCEEEEEEEEEEcCCCCcEEEEEeecc
Confidence 999999999999999998 599999999996 45689999999999999997665 677877743
No 47
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=98.82 E-value=9.8e-09 Score=98.85 Aligned_cols=68 Identities=12% Similarity=0.231 Sum_probs=58.4
Q ss_pred cCCCCCCcEEEEEEEEEecCeeEEEECCCeEEEEeccccCCccccCc----------ccccccCCEEEEEEEEEeccCC
Q 005707 142 NEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDV----------GSIVSVGQEVKVRLIEANAETG 210 (681)
Q Consensus 142 ~~~LkvGdIVeGkV~sV~d~GaFVdLgggV~GLVPiSELS~~~v~d~----------~e~fkVGd~VkVkVl~VD~ekg 210 (681)
+....+|++++|+|++++++|+||+|+. .+||||+++|++.+..++ .+.|++||.|+|+|+++|.+.+
T Consensus 78 ~~~~~~Gev~~G~V~~v~~fG~FV~l~~-~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~ 155 (171)
T 1y14_B 78 VFKPFKGEVVDGTVVSCSQHGFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVS 155 (171)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEEETT-EEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEEEETT
T ss_pred EccCCCCCEEEEEEEEEecCEEEEEecC-eEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEEEEcCCC
Confidence 4467799999999999999999999998 999999999986543222 2669999999999999998774
No 48
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=98.81 E-value=1.1e-08 Score=99.05 Aligned_cols=79 Identities=25% Similarity=0.358 Sum_probs=66.3
Q ss_pred cccCCccCcEEEEEEEEEecceEEEEeCCCeEEEEeCCCCCcccccc---------cCCCCcccCCCEEEEEEEEEe---
Q 005707 256 KTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFAN---------MMGGSSLQVGQEVSVRVLRIS--- 323 (681)
Q Consensus 256 ~~sklkvGdIV~G~VknVt~~GaFVeIg~GIeGLLpiSELSd~~ie~---------~~p~~~fkVGqkVkVrVL~ID--- 323 (681)
...+..+|+++.|+|++++++|+||+++ +++||+|.+++.++++.. .+....|++||.|+|||+.+|
T Consensus 75 iv~~p~~Gev~~G~V~~v~~~G~fv~l~-~~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~~v~~~~ 153 (180)
T 4ayb_E 75 ITYVPVVQEVVEGEVLQVDNYGVFVNLG-PMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVASTV 153 (180)
T ss_dssp EEECCCTTCEEEEEEEEEETTEEEEECS-SSEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEEEEEECC--
T ss_pred eeeeccCCCEEEEEEeeeccceEEEEEC-CccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEEEEEEeCCC
Confidence 3556789999999999999999999997 699999999999886521 134668999999999999996
Q ss_pred ---CCeEEEEEeccC
Q 005707 324 ---RGQVTLTMKKED 335 (681)
Q Consensus 324 ---kgKI~LSLK~~~ 335 (681)
..||.||||+.-
T Consensus 154 ~~~~~rI~ls~k~~g 168 (180)
T 4ayb_E 154 TGRLPRIALTMRQPY 168 (180)
T ss_dssp -----CEEEECCSTT
T ss_pred CcccCcEEEEcCCCC
Confidence 258999999853
No 49
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=98.80 E-value=2.4e-10 Score=132.68 Aligned_cols=155 Identities=12% Similarity=0.015 Sum_probs=95.6
Q ss_pred cccccceeeecccccccccceeEEeccCCceeEEeCcccCcccccccchhhcccceeEEEEEecCCCCCCCCcceecCCC
Q 005707 25 NNCLTRYNSTRKSTKQTISSQRFLLPLPSSVRFFSQFQSGSALQHKSALHIISATGINVAVEESDSPAADDDSAGASDIP 104 (681)
Q Consensus 25 ~~~~~~~~~~r~~~~~~~s~~~l~~dl~glrGfIP~sq~~~~~~~~~~~~~lvG~~i~VkVievD~~~~~~~~lvlSer~ 104 (681)
..+.+||||+-.+|.|||||.|++.||-.+|-+ -........ ... +.. .--+.
T Consensus 585 ~~~~~HfgLa~~~YtHfTSPIRRY~DLivHR~L-~~~l~~~~~-~~~-~~~---------------------~~~l~--- 637 (760)
T 2vnu_D 585 YPDFRHYGLAVDIYTHFTSPIRRYCDVVAHRQL-AGAIGYEPL-SLT-HRD---------------------KNKMD--- 637 (760)
T ss_dssp GGGGCBTTTTBSCCCCCSCTTTBHHHHHHHHHH-HHHTTSSCC-CGG-GGC---------------------HHHHH---
T ss_pred CCCCCceecCCCceeccCchHhhhHHHHHHHHH-HHHHccCCC-ccc-ccC---------------------HHHHH---
Confidence 457899999999999999999999998776432 111111000 000 000 00011
Q ss_pred CCcccccccccccCCChhhHHhhhchhhhhcCCCCCCcCCCCCCcEEEEEEEEEecCeeEEEECC-CeEEEEeccccC--
Q 005707 105 SDVETSESSSIKSEASPTLAESRRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGA-FTDGLVHVSRLS-- 181 (681)
Q Consensus 105 s~v~~ae~ss~~sea~~daek~~~kr~~rk~e~~~lt~~~LkvGdIVeGkV~sV~d~GaFVdLgg-gV~GLVPiSELS-- 181 (681)
..+++++.+.+.+..+++...+..... +..-++ +++.|+|++|.++|+||.|.. +++|+||+++|.
T Consensus 638 ---~~~~~~s~~er~A~~aer~~~~~~~~~-------~l~~~~-~~~~g~V~~V~~~G~fV~l~~~giEGlVhis~L~~~ 706 (760)
T 2vnu_D 638 ---MICRNINRKHRNAQFAGRASIEYYVGQ-------VMRNNE-STETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTED 706 (760)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHTCC-SEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHCSC
T ss_pred ---HHHHHhhHHHHHHHHHHHHHHHHHHHH-------HhhcCc-eEEEEEEEEEECCeEEEEEeCCCcEEEEEeccccCC
Confidence 113445555566555555443321111 112223 699999999999999999975 799999999996
Q ss_pred Cccc-----------cC----cccccccCCEEEEEEEEEecc---CCceEEEEe
Q 005707 182 DNFV-----------KD----VGSIVSVGQEVKVRLIEANAE---TGRISLTMR 217 (681)
Q Consensus 182 ~~~v-----------~d----~~e~fkVGd~VkVkVl~VD~e---kgrI~LSlK 217 (681)
++++ .+ ....|++||.|+|+|+.+|.+ +++|.|++|
T Consensus 707 ~d~~~fd~~~~~l~g~~~~~~~~~~~~lGD~V~VkV~~vd~~~~~~~kI~lslk 760 (760)
T 2vnu_D 707 PNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPITSKRKAELLLK 760 (760)
T ss_dssp GGGCEEETTTTEEEECCTTCSSCEEEETTCEEEEEEC--------CCEEEC---
T ss_pred CceeEEcccccEEEEecCCCccCcEEecCCEEEEEEEEEECccccCCcEEEEeC
Confidence 4431 22 257899999999999999988 689999886
No 50
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=98.79 E-value=4.2e-10 Score=133.69 Aligned_cols=155 Identities=12% Similarity=0.015 Sum_probs=103.5
Q ss_pred cccccceeeecccccccccceeEEeccCCceeEEeCcccCcccccccchhhcccceeEEEEEecCCCCCCCCcceecCCC
Q 005707 25 NNCLTRYNSTRKSTKQTISSQRFLLPLPSSVRFFSQFQSGSALQHKSALHIISATGINVAVEESDSPAADDDSAGASDIP 104 (681)
Q Consensus 25 ~~~~~~~~~~r~~~~~~~s~~~l~~dl~glrGfIP~sq~~~~~~~~~~~~~lvG~~i~VkVievD~~~~~~~~lvlSer~ 104 (681)
..+.+||||+-.+|.|||||.|++.|+-.+|-+ -....+... +.. +.. .-.+.
T Consensus 802 ~~~~gHfgLa~~~YtHfTSPIRRY~DLivHR~L-~a~L~~~~~-~~~-~~~---------------------~~~l~--- 854 (977)
T 2wp8_J 802 YPDFRHYGLAVDIYTHFTSPIRRYCDVVAHRQL-AGAIGYEPL-SLT-HRD---------------------KNKMD--- 854 (977)
T ss_dssp GGGSCBTTTTBSSCCCCSCTTTBHHHHHHHHHH-HHHTTSSCC-CGG-GGC---------------------HHHHH---
T ss_pred CCCCCceecCCCCeeccCchHhhHHHHHHHHHH-HHHhcCCCC-ccc-ccC---------------------HHHHH---
Confidence 356799999999999999999999998776432 111111000 000 000 00011
Q ss_pred CCcccccccccccCCChhhHHhhhchhhhhcCCCCCCcCCCCCCcEEEEEEEEEecCeeEEEECC-CeEEEEeccccC--
Q 005707 105 SDVETSESSSIKSEASPTLAESRRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGA-FTDGLVHVSRLS-- 181 (681)
Q Consensus 105 s~v~~ae~ss~~sea~~daek~~~kr~~rk~e~~~lt~~~LkvGdIVeGkV~sV~d~GaFVdLgg-gV~GLVPiSELS-- 181 (681)
..+++.+.+.+.+..+++...+..... +..-+ |+++.|+|++|.++|+||.|.. +++|+||+++|.
T Consensus 855 ---~i~~~~s~~er~A~~aeR~~~~~~~~~-------~l~~~-ge~~~g~V~~V~~~G~fV~L~~~giEGlVhis~L~~~ 923 (977)
T 2wp8_J 855 ---MICRNINRKHRNAQFAGRASIEYYVGQ-------VMRNN-ESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTED 923 (977)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHT-TCEEEEEEEEECSSEEEEECTTTCCEEEEEGGGTCSC
T ss_pred ---HHHHHhCHHHHHHHHHHHHHHHHHHhh-------hhccc-ceEEEEEEEEEcCCeEEEEEcCCCeEEEEEeccccCC
Confidence 113445556666666665544321111 21223 8899999999999999999975 799999999997
Q ss_pred Cccc-----------cC----cccccccCCEEEEEEEEEecc---CCceEEEEe
Q 005707 182 DNFV-----------KD----VGSIVSVGQEVKVRLIEANAE---TGRISLTMR 217 (681)
Q Consensus 182 ~~~v-----------~d----~~e~fkVGd~VkVkVl~VD~e---kgrI~LSlK 217 (681)
++++ .+ ....|++||.|+|+|..+|.. +++|.|++|
T Consensus 924 ~d~y~fde~~~~L~g~~~~g~~~~~~~lGD~V~VkV~~vd~~~~~~~kI~Lslk 977 (977)
T 2wp8_J 924 PNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPITSKRKAELLLK 977 (977)
T ss_dssp GGGCEEETTTTEEEECCTTCCSCEEEETTCEEEEEECCCCCSSSCCCCCCEEEC
T ss_pred CceeEEcccccEEEeecCCCccCcEEccCCEEEEEEEEEcCcccCCCceEEEeC
Confidence 4431 22 357899999999999999874 489999986
No 51
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=98.79 E-value=1.4e-08 Score=97.62 Aligned_cols=75 Identities=11% Similarity=0.300 Sum_probs=61.3
Q ss_pred cCCCCCCcEEEEEEEEEecCeeEEEECCCeEEEEeccccCCccccCc------------ccccccCCEEEEEEEEEeccC
Q 005707 142 NEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDV------------GSIVSVGQEVKVRLIEANAET 209 (681)
Q Consensus 142 ~~~LkvGdIVeGkV~sV~d~GaFVdLgggV~GLVPiSELS~~~v~d~------------~e~fkVGd~VkVkVl~VD~ek 209 (681)
+....+|++++|+|++++++|+||+|+. .+||||+++|++.+..++ ...|++||.|+|+|+++|.+.
T Consensus 76 ~~~~~~Gev~~G~V~~v~~fG~fV~l~~-~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~ 154 (172)
T 2c35_B 76 VFRPFKGEVVDAVVTQVNKVGLFTEIGP-MSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDK 154 (172)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEEETT-EEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEEET
T ss_pred EeeCCCCCEEEEEEEEEeCCEEEEEECC-EEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEEEEcCC
Confidence 3456799999999999999999999975 789999999986544222 447999999999999999876
Q ss_pred C---ceEEEEec
Q 005707 210 G---RISLTMRE 218 (681)
Q Consensus 210 g---rI~LSlK~ 218 (681)
+ ++. ||++
T Consensus 155 ~~~~~ig-sm~~ 165 (172)
T 2c35_B 155 NDIFAIG-SLMD 165 (172)
T ss_dssp TEEEEEE-ECCS
T ss_pred CCcEEEE-EecC
Confidence 6 444 7764
No 52
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=98.77 E-value=1.2e-08 Score=102.35 Aligned_cols=80 Identities=14% Similarity=0.245 Sum_probs=65.9
Q ss_pred cCCCCCCcEEEEEEEEEecCeeEEEECCCeEEEEeccccCCccccCcc----------cccccCCEEEEEEEEEeccCC-
Q 005707 142 NEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVG----------SIVSVGQEVKVRLIEANAETG- 210 (681)
Q Consensus 142 ~~~LkvGdIVeGkV~sV~d~GaFVdLgggV~GLVPiSELS~~~v~d~~----------e~fkVGd~VkVkVl~VD~ekg- 210 (681)
+...++|++++|+|++++++|+||+|+. .+||||+++|++.+..++. +.|++||.|+|+|+++|.+.+
T Consensus 78 ~~~p~vGev~~G~V~~vt~fG~FVelg~-~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~vd~~~~~ 156 (215)
T 2b8k_G 78 VFKPFKGEVVDGTVVSCSQHGFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSS 156 (215)
T ss_dssp EECCCTTEEEEEEEEEEETTEEEEECTT-SEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEEEEEETTE
T ss_pred eeccCCCCEEEEEEEEEecceEEEEecC-cEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEEEEEcCCCc
Confidence 4466899999999999999999999988 9999999999866443332 569999999999999998875
Q ss_pred --ceEEEEeccchhh
Q 005707 211 --RISLTMRESDDIS 223 (681)
Q Consensus 211 --rI~LSlK~l~~dp 223 (681)
+|. ||++.-.-+
T Consensus 157 i~~Ig-Smk~~~LG~ 170 (215)
T 2b8k_G 157 IHAIG-SIKEDYLGA 170 (215)
T ss_dssp EEEEE-ECCSTTCEE
T ss_pred cEEEE-EcCCCCCCC
Confidence 555 887654433
No 53
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=98.77 E-value=8.1e-10 Score=131.46 Aligned_cols=79 Identities=11% Similarity=0.188 Sum_probs=0.4
Q ss_pred cccCCccCcEEEEEEEEEecceEEEEeCCCeEEEEeCCCCCcccccccCCCCcccCCCEEEEEEEEEe--CCeEEEEEec
Q 005707 256 KTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTMKK 333 (681)
Q Consensus 256 ~~sklkvGdIV~G~VknVt~~GaFVeIg~GIeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL~ID--kgKI~LSLK~ 333 (681)
...+|++|++|.|+|++|++||+||+|+.|++||||+++++|.++ ..++...|++||.|+|+|++|| ++||.||||.
T Consensus 899 t~~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~-v~~~~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~ 977 (1030)
T 3psf_A 899 SEKTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQL-RRPANEIYEIGKTYPAKVIYIDYANITAEVSLLD 977 (1030)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred cHHHhcCCCEEEEEEEEEccCeEEEEeCCCcEEEEEHHHcCCCcc-cCCHHHcCCCCCEEEEEEEEEECCCCEEEEEech
Confidence 458899999999999999999999999999999999999999872 1246889999999999999997 6899999997
Q ss_pred cC
Q 005707 334 ED 335 (681)
Q Consensus 334 ~~ 335 (681)
..
T Consensus 978 ~d 979 (1030)
T 3psf_A 978 HD 979 (1030)
T ss_dssp --
T ss_pred HH
Confidence 63
No 54
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=98.77 E-value=1.1e-08 Score=91.17 Aligned_cols=86 Identities=29% Similarity=0.375 Sum_probs=67.6
Q ss_pred CCCCCcEEEEEEEEE---ecCeeEEEE-CCCeEEEEeccccCCccccCcccccccCCEEEEEEEEEeccCCceEEEEecc
Q 005707 144 DLIPGATFTGKVRSI---QPFGAFIDF-GAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRES 219 (681)
Q Consensus 144 ~LkvGdIVeGkV~sV---~d~GaFVdL-gggV~GLVPiSELS~~~v~d~~e~fkVGd~VkVkVl~VD~ekgrI~LSlK~l 219 (681)
..+.++.++|+|+.. +.|| |+.- .++.++|+|++.|.+..+
T Consensus 10 ~~~~~~~~~G~Vk~fn~~kGfG-FI~~~~gg~dvfvH~s~l~~~~~---------------------------------- 54 (101)
T 2bh8_A 10 SRLQSGKMTGIVKWFNADKGFG-FITPDDGSKDVFVHFSAGSSGAA---------------------------------- 54 (101)
T ss_dssp ------CEEEEEEEEEGGGTEE-EEEESSSSCEEEEECCCSCSSSC----------------------------------
T ss_pred cccccccceeEEEEEECCCCCE-EEEeCCCCcEEEEEEEEEecCCc----------------------------------
Confidence 345677899999998 4688 6665 455899999999987631
Q ss_pred chhhHhhhhccccccCCccccccccCCCCCCccccccccCCccCcEEEEEEEEEecceEEEEeCCCeEEEEeCCCCCccc
Q 005707 220 DDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDG 299 (681)
Q Consensus 220 ~~dp~ek~~~~~p~s~d~~~~k~r~~~k~~~~k~~~~~sklkvGdIV~G~VknVt~~GaFVeIg~GIeGLLpiSELSd~~ 299 (681)
. ...+++|+.|.+.|.++.+||+||+|.++++||||+++++|.+
T Consensus 55 ----~--------------------------------~~~l~~Ge~V~g~V~~i~~fG~fv~l~~~~eGlvhis~i~~~~ 98 (101)
T 2bh8_A 55 ----V--------------------------------RGNPQQGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWAQ 98 (101)
T ss_dssp ----C--------------------------------CCCCCTTCEEEEEEEECCSEEEEECTTSCEEEEEEEEEEEECC
T ss_pred ----c--------------------------------ccCCCCCCEEEEEEEEeCCcEEEEEcCCCceEEEEHHHCccCc
Confidence 0 1247899999999999999999999998999999999999876
Q ss_pred c
Q 005707 300 F 300 (681)
Q Consensus 300 i 300 (681)
+
T Consensus 99 ~ 99 (101)
T 2bh8_A 99 A 99 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 55
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=98.71 E-value=1.5e-08 Score=101.15 Aligned_cols=77 Identities=13% Similarity=0.069 Sum_probs=67.6
Q ss_pred cCCccCcEEEEEEEEEecceEEEEeC--------CCeEEEEeCCCCCcccccccCCCCcccCCCEEEEEEEEEeC--CeE
Q 005707 258 TKFVKGQDLEGTVKNLTRSGAFISLP--------EGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISR--GQV 327 (681)
Q Consensus 258 sklkvGdIV~G~VknVt~~GaFVeIg--------~GIeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL~IDk--gKI 327 (681)
..+++|++|.|+|++|.++|+||+|. .+.+|+||++++++.+.+..++.+.|++||.|.|+|+++++ +++
T Consensus 77 y~p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akVisi~~~~~~i 156 (209)
T 2nn6_I 77 LLPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNY 156 (209)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETTTTEE
T ss_pred CCCCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEEEEEeCCCCeE
Confidence 35789999999999999999999974 57899999999998876534568889999999999999975 579
Q ss_pred EEEEecc
Q 005707 328 TLTMKKE 334 (681)
Q Consensus 328 ~LSLK~~ 334 (681)
.||+|..
T Consensus 157 ~LS~k~~ 163 (209)
T 2nn6_I 157 LLTTAEN 163 (209)
T ss_dssp EEECCSS
T ss_pred EEEEecC
Confidence 9999875
No 56
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=98.69 E-value=2.2e-08 Score=97.45 Aligned_cols=69 Identities=22% Similarity=0.230 Sum_probs=63.1
Q ss_pred CccCcEEEEEEEEEecceEEEEeCC----------CeEEEEeCCCCCcccccccCCCCcccCCCEEEEEEEEEeCCeEEE
Q 005707 260 FVKGQDLEGTVKNLTRSGAFISLPE----------GEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISRGQVTL 329 (681)
Q Consensus 260 lkvGdIV~G~VknVt~~GaFVeIg~----------GIeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL~IDkgKI~L 329 (681)
.+ |++|.|+|++|.++|+||+|.. +.+|+||++++++.+.+ ++.+.|++||.|.++|++ +++.|
T Consensus 56 p~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~--~~~~~~~~GD~V~akVi~---~~i~L 129 (179)
T 3m7n_A 56 VK-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVK--EISEAVGYLDILKARVIG---DNLRL 129 (179)
T ss_dssp CT-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCS--SGGGTCCTTCEEEEEEEE---TTTEE
T ss_pred CC-CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcchhh--CHhhcCCCCCEEEEEEEC---CeEEE
Confidence 46 9999999999999999999987 89999999999998764 448999999999999998 89999
Q ss_pred EEecc
Q 005707 330 TMKKE 334 (681)
Q Consensus 330 SLK~~ 334 (681)
|+|..
T Consensus 130 S~k~~ 134 (179)
T 3m7n_A 130 STKEE 134 (179)
T ss_dssp ECCST
T ss_pred EEecC
Confidence 99875
No 57
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=98.67 E-value=6.1e-08 Score=97.23 Aligned_cols=81 Identities=15% Similarity=0.131 Sum_probs=63.0
Q ss_pred ccCCccCcEEEEEEEEEecceEEEEeCCCeEEEEeCCCCCcccccccCC--------CCcccCCCEEEEEEEEEe--C--
Q 005707 257 TTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMG--------GSSLQVGQEVSVRVLRIS--R-- 324 (681)
Q Consensus 257 ~sklkvGdIV~G~VknVt~~GaFVeIg~GIeGLLpiSELSd~~ie~~~p--------~~~fkVGqkVkVrVL~ID--k-- 324 (681)
..+..+|+++.|+|+++++||+||+|++ ++||||+++|.+.+.-+... ...|++||.|+|+|+++| +
T Consensus 78 ~~~p~vGev~~G~V~~vt~fG~FVelg~-~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~vd~~~~~ 156 (215)
T 2b8k_G 78 VFKPFKGEVVDGTVVSCSQHGFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSS 156 (215)
T ss_dssp EECCCTTEEEEEEEEEEETTEEEEECTT-SEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEEEEEETTE
T ss_pred eeccCCCCEEEEEEEEEecceEEEEecC-cEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEEEEEcCCCc
Confidence 4456899999999999999999999997 99999999997653211111 256999999999999997 3
Q ss_pred -CeEEEEEeccCCCcC
Q 005707 325 -GQVTLTMKKEDDVGS 339 (681)
Q Consensus 325 -gKI~LSLK~~~~DP~ 339 (681)
.++. |||+....++
T Consensus 157 i~~Ig-Smk~~~LG~~ 171 (215)
T 2b8k_G 157 IHAIG-SIKEDYLGAI 171 (215)
T ss_dssp EEEEE-ECCSTTCEEC
T ss_pred cEEEE-EcCCCCCCCc
Confidence 3566 8877544443
No 58
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=98.67 E-value=5.6e-08 Score=93.58 Aligned_cols=66 Identities=17% Similarity=0.170 Sum_probs=54.0
Q ss_pred ccCCccCcEEEEEEEEEecceEEEEeCCCeEEEEeCCCCCcccccccCC--------CCcccCCCEEEEEEEEEe
Q 005707 257 TTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMG--------GSSLQVGQEVSVRVLRIS 323 (681)
Q Consensus 257 ~sklkvGdIV~G~VknVt~~GaFVeIg~GIeGLLpiSELSd~~ie~~~p--------~~~fkVGqkVkVrVL~ID 323 (681)
..+..+|+++.|+|+++++||+||++++ .+||+|.+++++.+.-+... ...|++||.|+|+|+++|
T Consensus 78 ~~~~~~Gev~~G~V~~v~~fG~FV~l~~-~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd 151 (171)
T 1y14_B 78 VFKPFKGEVVDGTVVSCSQHGFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCI 151 (171)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEEETT-EEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEE
T ss_pred EccCCCCCEEEEEEEEEecCEEEEEecC-eEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEEEE
Confidence 4456699999999999999999999998 99999999997652111110 266999999999999997
No 59
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=98.64 E-value=3.3e-08 Score=101.15 Aligned_cols=74 Identities=18% Similarity=0.196 Sum_probs=68.1
Q ss_pred CCCCCcEEEEEEEEEecCeeEEEECCCeEEEEeccccCCccc---cCcccccccCCEEEEEEEEEeccCCceEEEEec
Q 005707 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFV---KDVGSIVSVGQEVKVRLIEANAETGRISLTMRE 218 (681)
Q Consensus 144 ~LkvGdIVeGkV~sV~d~GaFVdLgggV~GLVPiSELS~~~v---~d~~e~fkVGd~VkVkVl~VD~ekgrI~LSlK~ 218 (681)
.+++|++|.|+|+++.++|+||+|++..+|+||++++.+.+. .++.+.|++||.|.|+|++++.. +++.||++.
T Consensus 71 ~p~~GDiV~G~V~~v~~~ga~VdI~~~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~~-~~i~LS~r~ 147 (251)
T 2je6_I 71 YPKINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDRS-IDPVLSVKG 147 (251)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEETT-EEEEEECCS
T ss_pred CCCCCCEEEEEEEEEeCceEEEEcCCCeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECCC-CcEEEEEcc
Confidence 578999999999999999999999988999999999998777 78888999999999999999864 689999874
No 60
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=98.63 E-value=1.7e-08 Score=107.57 Aligned_cols=110 Identities=21% Similarity=0.183 Sum_probs=80.5
Q ss_pred cccccCCEEEEEEEEEeccCCceEEEEeccchhhHhhhhccccccCCccccccccCCCCCCccccccccCCc--cCcEEE
Q 005707 190 SIVSVGQEVKVRLIEANAETGRISLTMRESDDISKLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFV--KGQDLE 267 (681)
Q Consensus 190 e~fkVGd~VkVkVl~VD~ekgrI~LSlK~l~~dp~ek~~~~~p~s~d~~~~k~r~~~k~~~~k~~~~~sklk--vGdIV~ 267 (681)
..+.+||.+.+.|...|.. ++...+.|+...... |. ......+..|+ .|+++.
T Consensus 85 ~~~~vGd~ie~~I~~~dfg-R~aa~~aKqvi~qki------------------re------aere~i~~e~~~~~GeIV~ 139 (344)
T 1hh2_P 85 PLAEVGSIVKKELNVKNFG-RIAAQTAKQVLIQRI------------------RE------LEKEKQFEKYSELKGTVTT 139 (344)
T ss_dssp TTCCTTCEEEEECCCCCSS-SCSGGGHHHHHHHHH------------------HH------HTTCCSSCCTTCCTTCEEE
T ss_pred ccccCCCEEEEEEccccCc-cHHHHHHHHHHHHHH------------------HH------HHHHHHHHHHhhcCCCEEE
Confidence 4488999999999887643 233333344333222 00 01123456666 899999
Q ss_pred EEEEEEecceEEEEeCCCeEEEEeCCCCCcccccccCCCCcccCCCEEEEEEEEEe--C--CeEEEEEec
Q 005707 268 GTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRIS--R--GQVTLTMKK 333 (681)
Q Consensus 268 G~VknVt~~GaFVeIg~GIeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL~ID--k--gKI~LSLK~ 333 (681)
|+|.++.++|+||+++ +.+|+||.+|+. |.+.|++||.|+|+|++++ + .++.||.+.
T Consensus 140 G~V~ri~~~~v~VDlG-k~EgiLp~sE~i--------p~E~~~vGD~Vkv~V~~V~~~~kg~~I~LSRt~ 200 (344)
T 1hh2_P 140 AEVIRVMGEWADIRIG-KLETRLPKKEWI--------PGEEIKAGDLVKVYIIDVVKTTKGPKILVSRRV 200 (344)
T ss_dssp EEEEEECSSEEEEEET-TEEEEEEGGGSC--------TTCCCCTTCEEEEEEEEEEEETTEEEEEEESSS
T ss_pred EEEEEEecCcEEEEeC-CeEEEEeHHHcC--------CCcCCCCCCEEEEEEEEEEcCCCCcEEEEEeec
Confidence 9999999999999998 999999999875 3578999999999999997 3 357777754
No 61
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.60 E-value=1.1e-07 Score=96.06 Aligned_cols=74 Identities=16% Similarity=0.299 Sum_probs=67.6
Q ss_pred CCCCCcEEEEEEEEEecCeeEEEECCCeEEEEeccccCCc-cccCcccccccCCEEEEEEEEEeccCCceEEEEec
Q 005707 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDN-FVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRE 218 (681)
Q Consensus 144 ~LkvGdIVeGkV~sV~d~GaFVdLgggV~GLVPiSELS~~-~v~d~~e~fkVGd~VkVkVl~VD~ekgrI~LSlK~ 218 (681)
.+++|++|.|+|+.+.++|+||+|++..+|+||++++.+. +..++.+.|++||.|.|+|++++.. +++.||++.
T Consensus 54 ~p~~GDiV~G~V~~v~~~~a~V~I~~~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~~~-~~i~LS~r~ 128 (229)
T 2ba0_A 54 TPSVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDPK-MKVTLTMKD 128 (229)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECTT-CCEEEECCS
T ss_pred cCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHccccccccchhcccCCCCEEEEEEEEECCC-CcEEEEEcc
Confidence 4789999999999999999999999889999999999964 6788899999999999999999864 789999874
No 62
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=98.60 E-value=3.5e-08 Score=99.84 Aligned_cols=76 Identities=17% Similarity=0.169 Sum_probs=65.2
Q ss_pred CCccCcEEEEEEEEEecceEEEEeCCCeEEEEeCCCCCccccc--ccCCCCcccCCCEEEEEEEEEeC-CeEEEEEecc
Q 005707 259 KFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFA--NMMGGSSLQVGQEVSVRVLRISR-GQVTLTMKKE 334 (681)
Q Consensus 259 klkvGdIV~G~VknVt~~GaFVeIg~GIeGLLpiSELSd~~ie--~~~p~~~fkVGqkVkVrVL~IDk-gKI~LSLK~~ 334 (681)
..++|++|.|+|+++.++|+||+|+.+.+|+||++++.+.+.+ ...+...|++||.|.|+|+++++ +++.||+|..
T Consensus 63 ~p~~GDiV~G~V~~v~~~~~~V~I~~~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~~~~i~LS~k~~ 141 (235)
T 2z0s_A 63 VPQAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDKTRSPLLTVQGE 141 (235)
T ss_dssp CCCTTCCEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECTTSCEEEECCSS
T ss_pred CCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECCCCcEEEEEecc
Confidence 4689999999999999999999999999999999999763221 13457799999999999999974 6899999864
No 63
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=98.59 E-value=2.5e-08 Score=96.40 Aligned_cols=74 Identities=16% Similarity=0.340 Sum_probs=62.1
Q ss_pred cCCCCCCcEEEEEEEEEecCeeEEEECCCeEEEEeccccCCccccCc----------ccccccCCEEEEEEEEEeccCCc
Q 005707 142 NEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDV----------GSIVSVGQEVKVRLIEANAETGR 211 (681)
Q Consensus 142 ~~~LkvGdIVeGkV~sV~d~GaFVdLgggV~GLVPiSELS~~~v~d~----------~e~fkVGd~VkVkVl~VD~ekgr 211 (681)
+....+|++++|+|++++++|+||+|+. ++||||+++|++.+..+. ...|++||.|+|+|+++|.+.+.
T Consensus 79 vf~p~~Gev~~G~V~~v~~fG~FV~l~~-~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~vd~~~~~ 157 (172)
T 3h0g_G 79 LWRPFRGEVVDAIVTTVNKMGFFANIGP-LNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGTRTDATE 157 (172)
T ss_dssp EECCCTTCEEECCCCEEETTEEECCBTT-BCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEEEEEEESSSC
T ss_pred eeccCCCCEEEEEEEEEEcceEEEEeCC-eEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEEEEEECCCCC
Confidence 4567899999999999999999999976 789999999986654443 56899999999999999988753
Q ss_pred ---eEEEEe
Q 005707 212 ---ISLTMR 217 (681)
Q Consensus 212 ---I~LSlK 217 (681)
|. ||+
T Consensus 158 ~~~Ig-tm~ 165 (172)
T 3h0g_G 158 IFAIA-TMK 165 (172)
T ss_dssp EEEEE-ECC
T ss_pred ceEEE-EcC
Confidence 44 555
No 64
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=98.56 E-value=1.4e-07 Score=90.72 Aligned_cols=75 Identities=11% Similarity=0.220 Sum_probs=58.1
Q ss_pred ccCCccCcEEEEEEEEEecceEEEEeCCCeEEEEeCCCCCcccccccC----------CCCcccCCCEEEEEEEEEe--C
Q 005707 257 TTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMM----------GGSSLQVGQEVSVRVLRIS--R 324 (681)
Q Consensus 257 ~sklkvGdIV~G~VknVt~~GaFVeIg~GIeGLLpiSELSd~~ie~~~----------p~~~fkVGqkVkVrVL~ID--k 324 (681)
..+-.+|+++.|+|++++++|+||+|+ ..+||+|.++|.+.+.-+.. ....|++||.|+|+|+++| +
T Consensus 76 ~~~~~~Gev~~G~V~~v~~fG~fV~l~-~~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~ 154 (172)
T 2c35_B 76 VFRPFKGEVVDAVVTQVNKVGLFTEIG-PMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDK 154 (172)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEEET-TEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEEET
T ss_pred EeeCCCCCEEEEEEEEEeCCEEEEEEC-CEEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEEEEcCC
Confidence 334569999999999999999999997 67799999999764221111 1457999999999999997 3
Q ss_pred C---eEEEEEec
Q 005707 325 G---QVTLTMKK 333 (681)
Q Consensus 325 g---KI~LSLK~ 333 (681)
+ ++. |||+
T Consensus 155 ~~~~~ig-sm~~ 165 (172)
T 2c35_B 155 NDIFAIG-SLMD 165 (172)
T ss_dssp TEEEEEE-ECCS
T ss_pred CCcEEEE-EecC
Confidence 3 444 7765
No 65
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=98.56 E-value=7.4e-08 Score=97.46 Aligned_cols=74 Identities=19% Similarity=0.284 Sum_probs=66.6
Q ss_pred CCCCCcEEEEEEEEEecCeeEEEECCCeEEEEeccccCCc----cccCcccccccCCEEEEEEEEEeccCCceEEEEec
Q 005707 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDN----FVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRE 218 (681)
Q Consensus 144 ~LkvGdIVeGkV~sV~d~GaFVdLgggV~GLVPiSELS~~----~v~d~~e~fkVGd~VkVkVl~VD~ekgrI~LSlK~ 218 (681)
.+++|++|.|+|+++.++|+||+|++..+|+||++++.+. +..++.+.|++||.|.|+|++++.. +++.||++.
T Consensus 63 ~p~~GDiV~G~V~~v~~~~~~V~I~~~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~~-~~i~LS~k~ 140 (235)
T 2z0s_A 63 VPQAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDKT-RSPLLTVQG 140 (235)
T ss_dssp CCCTTCCEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECTT-SCEEEECCS
T ss_pred CCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECCC-CcEEEEEec
Confidence 6789999999999999999999999889999999999863 4577888999999999999999864 589999873
No 66
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=98.51 E-value=1.2e-07 Score=97.15 Aligned_cols=76 Identities=18% Similarity=0.159 Sum_probs=66.8
Q ss_pred CCccCcEEEEEEEEEecceEEEEeCCCeEEEEeCCCCCcccccc-cCCCCcccCCCEEEEEEEEEeC-CeEEEEEecc
Q 005707 259 KFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFAN-MMGGSSLQVGQEVSVRVLRISR-GQVTLTMKKE 334 (681)
Q Consensus 259 klkvGdIV~G~VknVt~~GaFVeIg~GIeGLLpiSELSd~~ie~-~~p~~~fkVGqkVkVrVL~IDk-gKI~LSLK~~ 334 (681)
..++|++|.|+|+.+.++|+||+|+.+.+|+||++++.+.+.+. .++...|++||.|.|+|+++++ +++.||+|..
T Consensus 71 ~p~~GDiV~G~V~~v~~~ga~VdI~~~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~~~~i~LS~r~~ 148 (251)
T 2je6_I 71 YPKINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDRSIDPVLSVKGK 148 (251)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEETTEEEEEECCST
T ss_pred CCCCCCEEEEEEEEEeCceEEEEcCCCeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECCCCcEEEEEccc
Confidence 45899999999999999999999999999999999998766422 4457899999999999999974 7899999864
No 67
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.37 E-value=6.4e-07 Score=90.45 Aligned_cols=74 Identities=27% Similarity=0.395 Sum_probs=64.3
Q ss_pred CccCcEEEEEEEEEecceEEEEeCCCeEEEEeCCCCCcccccccCCCCcccCCCEEEEEEEEEe-CCeEEEEEecc
Q 005707 260 FVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRIS-RGQVTLTMKKE 334 (681)
Q Consensus 260 lkvGdIV~G~VknVt~~GaFVeIg~GIeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL~ID-kgKI~LSLK~~ 334 (681)
.++|++|.|+|+.+.++|+||+|+...+|+||.+++.+... ..+....|++||.|.|+|++++ .+++.||+|..
T Consensus 55 p~~GDiV~G~V~~v~~~~a~V~I~~~~~g~l~isev~~~~~-~~~~~~~l~~GD~V~arVi~v~~~~~i~LS~r~~ 129 (229)
T 2ba0_A 55 PSVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKP-NKKPNEVLDIGDAIIAKVLNIDPKMKVTLTMKDR 129 (229)
T ss_dssp CCTTCEEEEEEEEECSSEEEEECSSSSCEEEEGGGCTTCCT-TSCGGGTCCTTCEEEEEEEEECTTCCEEEECCSS
T ss_pred CCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHcccccc-ccchhcccCCCCEEEEEEEEECCCCcEEEEEccc
Confidence 58999999999999999999999989999999999985311 1234678999999999999996 48999999865
No 68
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=98.34 E-value=2.7e-07 Score=89.09 Aligned_cols=75 Identities=15% Similarity=0.207 Sum_probs=59.3
Q ss_pred ccCCccCcEEEEEEEEEecceEEEEeCCCeEEEEeCCCCCccccccc--------CCCCcccCCCEEEEEEEEEe--C--
Q 005707 257 TTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANM--------MGGSSLQVGQEVSVRVLRIS--R-- 324 (681)
Q Consensus 257 ~sklkvGdIV~G~VknVt~~GaFVeIg~GIeGLLpiSELSd~~ie~~--------~p~~~fkVGqkVkVrVL~ID--k-- 324 (681)
.-+..+|+++.|+|++++++|+||+++ .++||+|.++|++.+.-+. +....|++||.|+|+|+++| +
T Consensus 79 vf~p~~Gev~~G~V~~v~~fG~FV~l~-~~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~vd~~~~~ 157 (172)
T 3h0g_G 79 LWRPFRGEVVDAIVTTVNKMGFFANIG-PLNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGTRTDATE 157 (172)
T ss_dssp EECCCTTCEEECCCCEEETTEEECCBT-TBCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEEEEEEESSSC
T ss_pred eeccCCCCEEEEEEEEEEcceEEEEeC-CeEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEEEEEECCCCC
Confidence 455779999999999999999999997 5779999999976532111 22468999999999999997 2
Q ss_pred -CeEEEEEec
Q 005707 325 -GQVTLTMKK 333 (681)
Q Consensus 325 -gKI~LSLK~ 333 (681)
.+|. |||+
T Consensus 158 ~~~Ig-tm~~ 166 (172)
T 3h0g_G 158 IFAIA-TMKE 166 (172)
T ss_dssp EEEEE-ECCS
T ss_pred ceEEE-EcCC
Confidence 3455 6664
No 69
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=98.19 E-value=4.1e-06 Score=74.45 Aligned_cols=86 Identities=17% Similarity=0.190 Sum_probs=61.5
Q ss_pred ccCCccCcEEEEEEEEE---ecceEEEEeCC-CeEEEEeCCCCCcccccccCCCCcccCCCEEEEEEEEEeCCeEEEEEe
Q 005707 257 TTKFVKGQDLEGTVKNL---TRSGAFISLPE-GEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISRGQVTLTMK 332 (681)
Q Consensus 257 ~sklkvGdIV~G~VknV---t~~GaFVeIg~-GIeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL~IDkgKI~LSLK 332 (681)
..+..+++.+.|+|+.. ..|| ||...+ |.++|+|.+.+.+..+
T Consensus 8 ~~~~~~~~~~~G~Vk~fn~~kGfG-FI~~~~gg~dvfvH~s~l~~~~~-------------------------------- 54 (101)
T 2bh8_A 8 HGSRLQSGKMTGIVKWFNADKGFG-FITPDDGSKDVFVHFSAGSSGAA-------------------------------- 54 (101)
T ss_dssp --------CEEEEEEEEEGGGTEE-EEEESSSSCEEEEECCCSCSSSC--------------------------------
T ss_pred eccccccccceeEEEEEECCCCCE-EEEeCCCCcEEEEEEEEEecCCc--------------------------------
Confidence 34455788899999987 6789 888655 6999999999987542
Q ss_pred ccCCCcCCcceeeeEEEEeecccEEEEEEcCCeEEEeeCCccccc
Q 005707 333 KEDDVGSNLQLTQGVIHAATNPFVLAFRSNKDISSFLDERDKSAT 377 (681)
Q Consensus 333 ~~~~DP~e~~lv~G~V~~~i~~fGlfV~l~~gI~GfIp~~els~~ 377 (681)
....+...+.+.|.|. .+.+||+||.+.++++||+|.+++++.
T Consensus 55 -~~~~l~~Ge~V~g~V~-~i~~fG~fv~l~~~~eGlvhis~i~~~ 97 (101)
T 2bh8_A 55 -VRGNPQQGDRVEGKIK-SITDFGIFIGLDGGIDGLVHLSDISWA 97 (101)
T ss_dssp -CCCCCCTTCEEEEEEE-ECCSEEEEECTTSCEEEEEEEEEEEEC
T ss_pred -cccCCCCCCEEEEEEE-EeCCcEEEEEcCCCceEEEEHHHCccC
Confidence 0112233455566677 788999999999999999999999976
No 70
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=98.12 E-value=5.3e-06 Score=82.21 Aligned_cols=67 Identities=12% Similarity=0.165 Sum_probs=57.8
Q ss_pred cCCCCCCcEEEEEEEEEecCeeEEEECCCeEEEEeccccCCccc-------------------cCcccccccCCEEEEEE
Q 005707 142 NEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFV-------------------KDVGSIVSVGQEVKVRL 202 (681)
Q Consensus 142 ~~~LkvGdIVeGkV~sV~d~GaFVdLgggV~GLVPiSELS~~~v-------------------~d~~e~fkVGd~VkVkV 202 (681)
+....+|+++.|+|++++++|+||+|+ .++|++|.+++.+++. .+....|++|+.|+|+|
T Consensus 76 ~f~p~~GEv~~G~Vs~vt~~GifV~lg-~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~VrvrV 154 (203)
T 3ayh_B 76 IFRPFRGEVMLGKIKSCSEEGIRVTIS-FFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQI 154 (203)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEECS-SCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCEEEEEE
T ss_pred EEccCCCCEEEEEEEEEeccEEEEEEe-CceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCCEEEEEE
Confidence 456789999999999999999999995 5999999999987654 44566799999999999
Q ss_pred EEEeccC
Q 005707 203 IEANAET 209 (681)
Q Consensus 203 l~VD~ek 209 (681)
.++|...
T Consensus 155 ~~v~~~~ 161 (203)
T 3ayh_B 155 ESEDFVD 161 (203)
T ss_dssp EEEEECC
T ss_pred EEEEccc
Confidence 9998643
No 71
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=98.10 E-value=7.3e-06 Score=87.97 Aligned_cols=81 Identities=12% Similarity=0.222 Sum_probs=60.8
Q ss_pred hhhhhcCCCCCCcCCCC--CCcEEEEEEEE----EecCeeEEEECC---CeEEEEeccccCCccccCcccccccCCEEEE
Q 005707 130 RTARKSEMPPVKNEDLI--PGATFTGKVRS----IQPFGAFIDFGA---FTDGLVHVSRLSDNFVKDVGSIVSVGQEVKV 200 (681)
Q Consensus 130 r~~rk~e~~~lt~~~Lk--vGdIVeGkV~s----V~d~GaFVdLgg---gV~GLVPiSELS~~~v~d~~e~fkVGd~VkV 200 (681)
.+.+..+...+ |..++ +|++|+|+|.+ +.+.++||+||+ +++|+||.+++. |.+.|++||.|+|
T Consensus 112 QkiREaEr~~i-~~ef~~r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~Eqi------P~E~~~~GDrVkv 184 (366)
T 1k0r_A 112 QRFRDAENERT-YGEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV------PGESYEHGNRLRC 184 (366)
T ss_dssp HHHHCCC---------CCCTTCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGSC------TTCCCCTTCEEEE
T ss_pred HHHHHHHHHHH-HHHHHhcCCCEEEEEEEEccccccCCeEEEEeCCCccceEEEEcHHHcC------CCccCCCCCEEEE
Confidence 33444443333 66666 99999999999 999999999987 599999999986 3578999999999
Q ss_pred EEEEEeccCCc--eEEEEe
Q 005707 201 RLIEANAETGR--ISLTMR 217 (681)
Q Consensus 201 kVl~VD~ekgr--I~LSlK 217 (681)
.|+.|+...+. |.||+.
T Consensus 185 yV~~V~~~~kgpqI~LSRT 203 (366)
T 1k0r_A 185 YVVGVTRGAREPLITLSRT 203 (366)
T ss_dssp EEEEEECCSSSCEEEEESS
T ss_pred EEEEEecCCCccEEEEEeC
Confidence 99999987654 566655
No 72
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=98.04 E-value=9.1e-06 Score=90.82 Aligned_cols=76 Identities=24% Similarity=0.449 Sum_probs=65.2
Q ss_pred CCCCCcEEEEEEEEEecC--eeEEEECCCeEEEEeccccCCccc---------cCcccccccCCEEEEEEEEEeccCCce
Q 005707 144 DLIPGATFTGKVRSIQPF--GAFIDFGAFTDGLVHVSRLSDNFV---------KDVGSIVSVGQEVKVRLIEANAETGRI 212 (681)
Q Consensus 144 ~LkvGdIVeGkV~sV~d~--GaFVdLgggV~GLVPiSELS~~~v---------~d~~e~fkVGd~VkVkVl~VD~ekgrI 212 (681)
...+|.+|.|+|+++.++ |+||++|.+..||||++++++.++ .++.+.+++||.|.|.|+.....++.-
T Consensus 42 ~~~vGnIY~GkV~rv~p~~~aAFVdiG~gk~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~Ke~~g~KGa 121 (517)
T 2bx2_L 42 EQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGA 121 (517)
T ss_dssp CCCTTCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEECCCTTCCC
T ss_pred cCCCCCEEEEEEEEeccCCceEEEEeCCCcEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEEEeeccccCCc
Confidence 456899999999999999 999999998999999999988763 245677999999999999988777777
Q ss_pred EEEEecc
Q 005707 213 SLTMRES 219 (681)
Q Consensus 213 ~LSlK~l 219 (681)
.||..-.
T Consensus 122 ~lTt~is 128 (517)
T 2bx2_L 122 ALTTFIS 128 (517)
T ss_dssp EEESSCC
T ss_pred eEEeeEE
Confidence 7776643
No 73
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=98.04 E-value=7.5e-06 Score=82.23 Aligned_cols=69 Identities=10% Similarity=0.044 Sum_probs=58.6
Q ss_pred cCCCCCCcEEEEEEEEEecCeeEEEECCCeEEEEeccccCCccc--------------cCcccccccCCEEEEEEEEEec
Q 005707 142 NEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFV--------------KDVGSIVSVGQEVKVRLIEANA 207 (681)
Q Consensus 142 ~~~LkvGdIVeGkV~sV~d~GaFVdLgggV~GLVPiSELS~~~v--------------~d~~e~fkVGd~VkVkVl~VD~ 207 (681)
+....+|+++.|+|++++++|+||+|.|.++|++|.+++.++++ .+....|++||.|+|+|..+|.
T Consensus 76 ~f~p~vGEv~~G~Is~Vt~fGifVeL~g~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV~~v~~ 155 (218)
T 2ckz_B 76 VFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVF 155 (218)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEECTTSCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEEEEEE
T ss_pred EecCCCCCEEEEEEEEEccCcEEEEccCccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEEEEEEc
Confidence 56778899999999999999999999667999999999976553 3345679999999999999997
Q ss_pred cCC
Q 005707 208 ETG 210 (681)
Q Consensus 208 ekg 210 (681)
..+
T Consensus 156 ~~~ 158 (218)
T 2ckz_B 156 VDV 158 (218)
T ss_dssp CCC
T ss_pred ccC
Confidence 654
No 74
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=97.96 E-value=1.3e-05 Score=91.83 Aligned_cols=73 Identities=16% Similarity=0.306 Sum_probs=59.6
Q ss_pred CCccCc--EEEEEEEEEecceEEEEeC-CCeEEEEeCCCCCc--ccccc--------cCCCCcccCCCEEEEEEEEEe--
Q 005707 259 KFVKGQ--DLEGTVKNLTRSGAFISLP-EGEEGFLPTSEESD--DGFAN--------MMGGSSLQVGQEVSVRVLRIS-- 323 (681)
Q Consensus 259 klkvGd--IV~G~VknVt~~GaFVeIg-~GIeGLLpiSELSd--~~ie~--------~~p~~~fkVGqkVkVrVL~ID-- 323 (681)
+-++|+ ++.|+|++|+++|+||+|. .|++||||.+++.+ +++.. .+....|++||.|+|+|+++|
T Consensus 555 ~~~vGe~~~f~g~V~~V~~~G~fV~L~~~gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~~~lGD~V~VkV~~vd~~ 634 (644)
T 2id0_A 555 KDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRME 634 (644)
T ss_dssp GGGTTSCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEEEETT
T ss_pred hhccCCCceEEEEEEEEeCCceEEEEcCCcEEEEEEchhccCcCceeEEcccccEEEecCCCEeCCCCEEEEEEEEEeCC
Confidence 346899 9999999999999999994 69999999999973 22111 023457999999999999998
Q ss_pred CCeEEEEE
Q 005707 324 RGQVTLTM 331 (681)
Q Consensus 324 kgKI~LSL 331 (681)
+++|.|++
T Consensus 635 ~~~I~~~l 642 (644)
T 2id0_A 635 TRSIIARP 642 (644)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEE
Confidence 58898887
No 75
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=97.86 E-value=2.3e-05 Score=77.58 Aligned_cols=66 Identities=9% Similarity=0.100 Sum_probs=54.3
Q ss_pred ccCCccCcEEEEEEEEEecceEEEEeCCCeEEEEeCCCCCcccccc-----------------cCCCCcccCCCEEEEEE
Q 005707 257 TTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFAN-----------------MMGGSSLQVGQEVSVRV 319 (681)
Q Consensus 257 ~sklkvGdIV~G~VknVt~~GaFVeIg~GIeGLLpiSELSd~~ie~-----------------~~p~~~fkVGqkVkVrV 319 (681)
.-+-.+|+++.|+|++++++|+||+|+ .++|++|.+++.+++... ......|++||.|++||
T Consensus 76 ~f~p~~GEv~~G~Vs~vt~~GifV~lg-~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~VrvrV 154 (203)
T 3ayh_B 76 IFRPFRGEVMLGKIKSCSEEGIRVTIS-FFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQI 154 (203)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEECS-SCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCEEEEEE
T ss_pred EEccCCCCEEEEEEEEEeccEEEEEEe-CceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCCEEEEEE
Confidence 455678999999999999999999995 899999999997654310 11245699999999999
Q ss_pred EEEe
Q 005707 320 LRIS 323 (681)
Q Consensus 320 L~ID 323 (681)
++++
T Consensus 155 ~~v~ 158 (203)
T 3ayh_B 155 ESED 158 (203)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9996
No 76
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=97.80 E-value=3.1e-05 Score=83.17 Aligned_cols=69 Identities=22% Similarity=0.416 Sum_probs=54.8
Q ss_pred ccccCCc--cCcEEEEEEEE----EecceEEEEeCC---CeEEEEeCCCCCcccccccCCCCcccCCCEEEEEEEEEeC-
Q 005707 255 MKTTKFV--KGQDLEGTVKN----LTRSGAFISLPE---GEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISR- 324 (681)
Q Consensus 255 ~~~sklk--vGdIV~G~Vkn----Vt~~GaFVeIg~---GIeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL~IDk- 324 (681)
..+.+|+ +|+++.|+|.+ +.+.++||+|+. +++|+||.+|+. |.+.|++||.|+|+|+++++
T Consensus 121 ~i~~ef~~r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~Eqi--------P~E~~~~GDrVkvyV~~V~~~ 192 (366)
T 1k0r_A 121 RTYGEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV--------PGESYEHGNRLRCYVVGVTRG 192 (366)
T ss_dssp ------CCCTTCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGSC--------TTCCCCTTCEEEEEEEEEECC
T ss_pred HHHHHHHhcCCCEEEEEEEEccccccCCeEEEEeCCCccceEEEEcHHHcC--------CCccCCCCCEEEEEEEEEecC
Confidence 5577777 99999999999 999999999986 599999998865 46799999999999999974
Q ss_pred ---CeEEEEE
Q 005707 325 ---GQVTLTM 331 (681)
Q Consensus 325 ---gKI~LSL 331 (681)
.+|.||.
T Consensus 193 ~kgpqI~LSR 202 (366)
T 1k0r_A 193 AREPLITLSR 202 (366)
T ss_dssp SSSCEEEEES
T ss_pred CCccEEEEEe
Confidence 3455655
No 77
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=97.78 E-value=3.2e-05 Score=86.49 Aligned_cols=74 Identities=27% Similarity=0.347 Sum_probs=59.2
Q ss_pred cCCccCcEEEEEEEEEecc--eEEEEeCCCeEEEEeCCCCCcccccc-------cCCCCcccCCCEEEEEEEEEeC--Ce
Q 005707 258 TKFVKGQDLEGTVKNLTRS--GAFISLPEGEEGFLPTSEESDDGFAN-------MMGGSSLQVGQEVSVRVLRISR--GQ 326 (681)
Q Consensus 258 sklkvGdIV~G~VknVt~~--GaFVeIg~GIeGLLpiSELSd~~ie~-------~~p~~~fkVGqkVkVrVL~IDk--gK 326 (681)
....+|.++.|+|++|.++ |+||+++.|..||||.++++|.++.. .+..+.+++||.|.|.|++... +.
T Consensus 41 ~~~~vGnIY~GkV~rv~p~~~aAFVdiG~gk~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~Ke~~g~KG 120 (517)
T 2bx2_L 41 HEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKG 120 (517)
T ss_dssp SCCCTTCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEECCCTTCC
T ss_pred CcCCCCCEEEEEEEEeccCCceEEEEeCCCcEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEEEeeccccCC
Confidence 4567999999999999999 99999999999999999998876321 1124569999999999999863 33
Q ss_pred EEEEE
Q 005707 327 VTLTM 331 (681)
Q Consensus 327 I~LSL 331 (681)
-.||.
T Consensus 121 a~lTt 125 (517)
T 2bx2_L 121 AALTT 125 (517)
T ss_dssp CEEES
T ss_pred ceEEe
Confidence 44444
No 78
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=97.75 E-value=4.8e-05 Score=77.98 Aligned_cols=70 Identities=11% Similarity=0.197 Sum_probs=60.8
Q ss_pred CCCcEEEEEEEE----EecCeeEEEECC---CeEEEEeccccCCccccCcccccccCCEEEEEEEEEeccC--CceEEEE
Q 005707 146 IPGATFTGKVRS----IQPFGAFIDFGA---FTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAET--GRISLTM 216 (681)
Q Consensus 146 kvGdIVeGkV~s----V~d~GaFVdLgg---gV~GLVPiSELS~~~v~d~~e~fkVGd~VkVkVl~VD~ek--grI~LSl 216 (681)
+.|++|+|+|.+ +.+..+||+||. +.+|+||.+|+. |.+.|++||.|+|.|+.++... .+|.||+
T Consensus 6 r~GeIVtG~V~r~~~~v~~~~ViVdlG~~~~k~EgiLP~~Eqi------p~E~~~~GDrIkayV~~V~~~~~gpqIiLSR 79 (251)
T 2asb_A 6 REGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV------PGESYEHGNRLRCYVVGVTRGAREPLITLSR 79 (251)
T ss_dssp CTTCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGSC------TTCCCCTTCEEEEEEEEEECCSSSCEEEEES
T ss_pred cCCCEEEEEEEEccccccCCeEEEEeCCCCcceEEEEcHHHcC------CCccCCCCCEEEEEEEEEEcCCCCCEEEEEe
Confidence 479999999999 889999999986 599999999985 4678999999999999999865 5899998
Q ss_pred eccch
Q 005707 217 RESDD 221 (681)
Q Consensus 217 K~l~~ 221 (681)
.....
T Consensus 80 t~p~l 84 (251)
T 2asb_A 80 THPNL 84 (251)
T ss_dssp SCHHH
T ss_pred ccHHH
Confidence 85443
No 79
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=97.71 E-value=4.6e-05 Score=76.49 Aligned_cols=68 Identities=16% Similarity=0.085 Sum_probs=55.0
Q ss_pred cccCCccCcEEEEEEEEEecceEEEEeCCCeEEEEeCCCCCcccccc------------cCCCCcccCCCEEEEEEEEEe
Q 005707 256 KTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFAN------------MMGGSSLQVGQEVSVRVLRIS 323 (681)
Q Consensus 256 ~~sklkvGdIV~G~VknVt~~GaFVeIg~GIeGLLpiSELSd~~ie~------------~~p~~~fkVGqkVkVrVL~ID 323 (681)
.+-+-.+|+++.|+|++++++|+||+|.+.++|++|.+++.++++.. ..-...|++||.|++||.+++
T Consensus 75 ~~f~p~vGEv~~G~Is~Vt~fGifVeL~g~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV~~v~ 154 (218)
T 2ckz_B 75 VVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIEREV 154 (218)
T ss_dssp EEECCCTTCEEEEEEEEEETTEEEEECTTSCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEEEEE
T ss_pred EEecCCCCCEEEEEEEEEccCcEEEEccCccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEEEEEE
Confidence 35556789999999999999999999966789999999996654311 111356999999999999997
No 80
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=97.71 E-value=2.7e-05 Score=92.89 Aligned_cols=70 Identities=20% Similarity=0.265 Sum_probs=58.5
Q ss_pred CcEEEEEEEEEecceEEEEeCC-CeEEEEeCCCCC--cccccc---------cC----CCCcccCCCEEEEEEEEEeC--
Q 005707 263 GQDLEGTVKNLTRSGAFISLPE-GEEGFLPTSEES--DDGFAN---------MM----GGSSLQVGQEVSVRVLRISR-- 324 (681)
Q Consensus 263 GdIV~G~VknVt~~GaFVeIg~-GIeGLLpiSELS--d~~ie~---------~~----p~~~fkVGqkVkVrVL~IDk-- 324 (681)
|+++.|+|++|.++|+||.|++ |++||||+++|. ++++.. .. ....|++||.|+|+|+.++.
T Consensus 887 ge~~~g~V~~V~~~G~fV~L~~~giEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~~~~lGD~V~VkV~~vd~~~ 966 (977)
T 2wp8_J 887 ESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPI 966 (977)
T ss_dssp TCEEEEEEEEECSSEEEEECTTTCCEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCEEEETTCEEEEEECCCCCSS
T ss_pred ceEEEEEEEEEcCCeEEEEEcCCCeEEEEEeccccCCCceeEEcccccEEEeecCCCccCcEEccCCEEEEEEEEEcCcc
Confidence 9999999999999999999998 999999999997 332100 01 24689999999999999963
Q ss_pred ---CeEEEEEe
Q 005707 325 ---GQVTLTMK 332 (681)
Q Consensus 325 ---gKI~LSLK 332 (681)
+||.|+||
T Consensus 967 ~~~~kI~Lslk 977 (977)
T 2wp8_J 967 TSKRKAELLLK 977 (977)
T ss_dssp SCCCCCCEEEC
T ss_pred cCCCceEEEeC
Confidence 79999997
No 81
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=97.66 E-value=4.1e-05 Score=80.59 Aligned_cols=74 Identities=14% Similarity=0.129 Sum_probs=61.7
Q ss_pred CCCCCcEEEEEEEEEecCeeEEEECCCeEEEEeccccCCc-c---c------cCcccccccCCEEEEEEEEEeccCCceE
Q 005707 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDN-F---V------KDVGSIVSVGQEVKVRLIEANAETGRIS 213 (681)
Q Consensus 144 ~LkvGdIVeGkV~sV~d~GaFVdLgggV~GLVPiSELS~~-~---v------~d~~e~fkVGd~VkVkVl~VD~ekgrI~ 213 (681)
..++|++|.|+|+.+.++|+||+|+....|++|++++++. . . .++...|++||.|.|+|++++. .+.+.
T Consensus 92 ~P~vGDvViG~Vt~V~~~~a~VdI~s~~~~~l~iS~v~f~gg~iR~~~~~D~~~m~~~l~vGDlV~ArVisv~~-~~~i~ 170 (308)
T 2nn6_H 92 IGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFS-DGAVS 170 (308)
T ss_dssp CCCSSBCCCEEEEEEETTEEEEECSSSSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEET-TTEEE
T ss_pred CCCCCCEEEEEEEEEeCceEEEEECCCcCCceechhhccccceeecccchhhhhhhccCCCCCEEEEEEEEcCC-CCCEE
Confidence 6789999999999999999999999778999999998753 2 1 2345689999999999999984 56899
Q ss_pred EEEec
Q 005707 214 LTMRE 218 (681)
Q Consensus 214 LSlK~ 218 (681)
||++.
T Consensus 171 LStr~ 175 (308)
T 2nn6_H 171 LHTRS 175 (308)
T ss_dssp EECCS
T ss_pred EEecC
Confidence 99883
No 82
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=97.58 E-value=4.9e-05 Score=88.51 Aligned_cols=69 Identities=20% Similarity=0.288 Sum_probs=52.0
Q ss_pred cEEEEEEEEEecceEEEEeCC-CeEEEEeCCCCC--cccccc---------cC----CCCcccCCCEEEEEEEEEe----
Q 005707 264 QDLEGTVKNLTRSGAFISLPE-GEEGFLPTSEES--DDGFAN---------MM----GGSSLQVGQEVSVRVLRIS---- 323 (681)
Q Consensus 264 dIV~G~VknVt~~GaFVeIg~-GIeGLLpiSELS--d~~ie~---------~~----p~~~fkVGqkVkVrVL~ID---- 323 (681)
+++.|+|++|.++|+||.|.+ |++||||++++. ++++.. .+ ....|++||.|+|+|+.+|
T Consensus 671 ~~~~g~V~~V~~~G~fV~l~~~giEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~~~~lGD~V~VkV~~vd~~~~ 750 (760)
T 2vnu_D 671 STETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPIT 750 (760)
T ss_dssp SEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCEEEETTCEEEEEEC-------
T ss_pred eEEEEEEEEEECCeEEEEEeCCCcEEEEEeccccCCCceeEEcccccEEEEecCCCccCcEEecCCEEEEEEEEEECccc
Confidence 799999999999999999998 999999999986 332100 01 1468999999999999996
Q ss_pred -CCeEEEEEe
Q 005707 324 -RGQVTLTMK 332 (681)
Q Consensus 324 -kgKI~LSLK 332 (681)
++||.|+||
T Consensus 751 ~~~kI~lslk 760 (760)
T 2vnu_D 751 SKRKAELLLK 760 (760)
T ss_dssp -CCEEEC---
T ss_pred cCCcEEEEeC
Confidence 379999986
No 83
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=97.54 E-value=0.00022 Score=69.41 Aligned_cols=72 Identities=13% Similarity=-0.005 Sum_probs=62.4
Q ss_pred CCCCCcEEEEEEEEEecCeeEEEECC-CeEEEEeccccCCccccCcccccccCCEEEEEEEEEeccCCceEEEEe
Q 005707 144 DLIPGATFTGKVRSIQPFGAFIDFGA-FTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMR 217 (681)
Q Consensus 144 ~LkvGdIVeGkV~sV~d~GaFVdLgg-gV~GLVPiSELS~~~v~d~~e~fkVGd~VkVkVl~VD~ekgrI~LSlK 217 (681)
..++||+|.|+|+.+..++++|+|+. ...|+||.+++. ...++.+..|++||.|.|+|..++.. +.+.||+.
T Consensus 4 ~P~~gDvViG~V~~v~~~~~~VdI~~~~~~a~L~~s~~~-g~~k~~r~~l~~GDlV~ArV~~~~~~-~~~~Ltc~ 76 (175)
T 2ja9_A 4 IPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFP-NASKKNRPTLQVGDLVYARVCTAEKE-LEAEIECF 76 (175)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEESSTTSCCEEEETTSST-TCCSSSCCCCCTTCEEEEEEEECCTT-SCCEEESS
T ss_pred cCCCcCEEEEEEEEEECcEEEEEECCCCccEEEEHHHCC-chhhhhhccCCCCCEEEEEEEEecCC-CceEEEec
Confidence 46789999999999999999999998 799999999886 33467788899999999999999753 57888843
No 84
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=97.50 E-value=8.4e-06 Score=90.12 Aligned_cols=138 Identities=13% Similarity=0.109 Sum_probs=86.7
Q ss_pred cccceeeecccccccccceeEEeccCCceeEEeCcccCcccccccchhhcccceeEEEEEecCCCCCCCCcceecCCCCC
Q 005707 27 CLTRYNSTRKSTKQTISSQRFLLPLPSSVRFFSQFQSGSALQHKSALHIISATGINVAVEESDSPAADDDSAGASDIPSD 106 (681)
Q Consensus 27 ~~~~~~~~r~~~~~~~s~~~l~~dl~glrGfIP~sq~~~~~~~~~~~~~lvG~~i~VkVievD~~~~~~~~lvlSer~s~ 106 (681)
+.+||||+-.+|.||+||.|++.|+-.+|-+. ... -|. .+-. .--+
T Consensus 324 ~~~HfgL~~~~YthfTSPIRRY~DLivHr~L~-a~l--------------~~~----------~~~~---~~~l------ 369 (469)
T 2r7d_A 324 PGPHHGMGLDLYAQATSPMRRYLDLVVHQQLR-AFL--------------AGR----------DPLS---SKVM------ 369 (469)
T ss_dssp CCCBTTTTBSCCCCCSCTTTBHHHHHHHHHHH-HHH--------------TTC----------CCCC---HHHH------
T ss_pred CCCchhhCccceeeECCcccccHHHHHHHHHH-HHH--------------cCC----------CCCC---HHHH------
Confidence 57899999999999999999999986664221 110 011 0000 0000
Q ss_pred cccccccccccCCChhhHHhhhchhhhhcCCCCCCcCCCCCCcEEEEEEEEEecCeeEEEECCCeEEEEeccccCCcccc
Q 005707 107 VETSESSSIKSEASPTLAESRRSRTARKSEMPPVKNEDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVK 186 (681)
Q Consensus 107 v~~ae~ss~~sea~~daek~~~kr~~rk~e~~~lt~~~LkvGdIVeGkV~sV~d~GaFVdLgggV~GLVPiSELS~~~v~ 186 (681)
...+.+.+.+.+++.++++...+..... +..-.+|+.++|.|+.+. + ..|+||++++..+ .
T Consensus 370 ~~~~~~~~~~er~a~~aer~~~~~~~~~-------~l~~~~g~~f~g~vv~l~---------~-~~glV~v~~l~~d--~ 430 (469)
T 2r7d_A 370 AAHIAESQMNADATRQAERLSRRHHTLR-------FIAAQPERVWDAVVVDRR---------G-AQATLLIPDLAFD--V 430 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHTCTTCCEEEEEEEEE---------T-TEEEEEEGGGTEE--E
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhCCCCEEEEEEEEEe---------C-cEEEEEECCCCeE--E
Confidence 0112334445555555554443321111 222357999999875432 3 4789999888765 2
Q ss_pred CcccccccCCEEEEEEEEEeccCCceEEEEe
Q 005707 187 DVGSIVSVGQEVKVRLIEANAETGRISLTMR 217 (681)
Q Consensus 187 d~~e~fkVGd~VkVkVl~VD~ekgrI~LSlK 217 (681)
.....|++||.|+|+|.++|..+++|.+...
T Consensus 431 ~~~~~~~lGd~V~V~v~~vd~~~~~i~f~~~ 461 (469)
T 2r7d_A 431 QVNTPAAPGTALQVQFADIDLPQMRVRARSV 461 (469)
T ss_dssp EEECCCCTTCEEEEEEEEEETTTTEEEEEEC
T ss_pred ecCCcCCCCCEEEEEEEEEccCCCEEEEEEE
Confidence 3345799999999999999999999988654
No 85
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=97.46 E-value=0.00021 Score=73.25 Aligned_cols=66 Identities=21% Similarity=0.412 Sum_probs=57.9
Q ss_pred ccCcEEEEEEEE----EecceEEEEeCC---CeEEEEeCCCCCcccccccCCCCcccCCCEEEEEEEEEeC----CeEEE
Q 005707 261 VKGQDLEGTVKN----LTRSGAFISLPE---GEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISR----GQVTL 329 (681)
Q Consensus 261 kvGdIV~G~Vkn----Vt~~GaFVeIg~---GIeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL~IDk----gKI~L 329 (681)
+.|++|.|+|.+ +.+..+||+|+. +.+|+||.+|+. |.+.|++||.|+|+|+++++ .+|.|
T Consensus 6 r~GeIVtG~V~r~~~~v~~~~ViVdlG~~~~k~EgiLP~~Eqi--------p~E~~~~GDrIkayV~~V~~~~~gpqIiL 77 (251)
T 2asb_A 6 REGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV--------PGESYEHGNRLRCYVVGVTRGAREPLITL 77 (251)
T ss_dssp CTTCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGSC--------TTCCCCTTCEEEEEEEEEECCSSSCEEEE
T ss_pred cCCCEEEEEEEEccccccCCeEEEEeCCCCcceEEEEcHHHcC--------CCccCCCCCEEEEEEEEEEcCCCCCEEEE
Confidence 589999999999 888999999986 599999998764 46889999999999999963 67999
Q ss_pred EEecc
Q 005707 330 TMKKE 334 (681)
Q Consensus 330 SLK~~ 334 (681)
|.+..
T Consensus 78 SRt~p 82 (251)
T 2asb_A 78 SRTHP 82 (251)
T ss_dssp ESSCH
T ss_pred EeccH
Confidence 98654
No 86
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=97.39 E-value=0.00016 Score=76.09 Aligned_cols=75 Identities=17% Similarity=0.131 Sum_probs=60.2
Q ss_pred CCccCcEEEEEEEEEecceEEEEeCCCeEEEEeCCCCCcc-c---ccc----cCCCCcccCCCEEEEEEEEEe-CCeEEE
Q 005707 259 KFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDD-G---FAN----MMGGSSLQVGQEVSVRVLRIS-RGQVTL 329 (681)
Q Consensus 259 klkvGdIV~G~VknVt~~GaFVeIg~GIeGLLpiSELSd~-~---ie~----~~p~~~fkVGqkVkVrVL~ID-kgKI~L 329 (681)
..++|++|.|+|+.+..+|+||+|+....|++|.+++.+. . ..+ .+....|++||.|.++|+.++ .+++.|
T Consensus 92 ~P~vGDvViG~Vt~V~~~~a~VdI~s~~~~~l~iS~v~f~gg~iR~~~~~D~~~m~~~l~vGDlV~ArVisv~~~~~i~L 171 (308)
T 2nn6_H 92 IGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSL 171 (308)
T ss_dssp CCCSSBCCCEEEEEEETTEEEEECSSSSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEETTTEEEE
T ss_pred CCCCCCEEEEEEEEEeCceEEEEECCCcCCceechhhccccceeecccchhhhhhhccCCCCCEEEEEEEEcCCCCCEEE
Confidence 4679999999999999999999999888999999998753 1 110 011357999999999999997 588999
Q ss_pred EEec
Q 005707 330 TMKK 333 (681)
Q Consensus 330 SLK~ 333 (681)
|+|.
T Consensus 172 Str~ 175 (308)
T 2nn6_H 172 HTRS 175 (308)
T ss_dssp ECCS
T ss_pred EecC
Confidence 9985
No 87
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=97.30 E-value=0.00081 Score=65.48 Aligned_cols=68 Identities=16% Similarity=0.086 Sum_probs=58.8
Q ss_pred CccCcEEEEEEEEEecceEEEEeCC-CeEEEEeCCCCCcccccccCCCCcccCCCEEEEEEEEEeC-CeEEEE
Q 005707 260 FVKGQDLEGTVKNLTRSGAFISLPE-GEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISR-GQVTLT 330 (681)
Q Consensus 260 lkvGdIV~G~VknVt~~GaFVeIg~-GIeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL~IDk-gKI~LS 330 (681)
.++||+|.|+|+.+..++++|+|+. ...|+||.+.+.... .+....|++||.|.++|+.++. +.+.|+
T Consensus 5 P~~gDvViG~V~~v~~~~~~VdI~~~~~~a~L~~s~~~g~~---k~~r~~l~~GDlV~ArV~~~~~~~~~~Lt 74 (175)
T 2ja9_A 5 PSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNAS---KKNRPTLQVGDLVYARVCTAEKELEAEIE 74 (175)
T ss_dssp CCTTCEEEEEEEEECSSEEEEESSTTSCCEEEETTSSTTCC---SSSCCCCCTTCEEEEEEEECCTTSCCEEE
T ss_pred CCCcCEEEEEEEEEECcEEEEEECCCCccEEEEHHHCCchh---hhhhccCCCCCEEEEEEEEecCCCceEEE
Confidence 4689999999999999999999998 799999999876321 2346789999999999999974 789999
No 88
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=96.34 E-value=0.0065 Score=63.48 Aligned_cols=72 Identities=15% Similarity=0.062 Sum_probs=62.0
Q ss_pred CCCCCcEEEEEEEEEecCeeEEEECCCeEEEEeccccCCccccCcccccccCCEEEEEEEEEeccCCceEEEEe
Q 005707 144 DLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMR 217 (681)
Q Consensus 144 ~LkvGdIVeGkV~sV~d~GaFVdLgggV~GLVPiSELS~~~v~d~~e~fkVGd~VkVkVl~VD~ekgrI~LSlK 217 (681)
-.++|++|-|+|+.+....+.|+|+....|+||.+++. +..++.+..|++||.|.++|+.++. .+.+.||+.
T Consensus 124 iP~vGDiVIG~Vt~v~~~~~~VdI~s~~~a~L~~~~f~-Gatk~~r~~f~~GDlV~ArV~s~~~-~~~~eLsc~ 195 (289)
T 2nn6_G 124 VPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFE-GATKRNRPNVQVGDLIYGQFVVANK-DMEPEMVCI 195 (289)
T ss_dssp CCCSSEEEEEEEEEEETTEEEEECSSSSCCCEESCSSS-CCSSCSSSSSCTTCEEEEEEEECCT-TSCCEEECS
T ss_pred CCCCCCEEEEEEEEEeCcEEEEEECCCceeEEehhhcC-cchhhhhhhcCCCCEEEEEEEEcCC-CCceEEEec
Confidence 46899999999999999999999998889999999876 2346677889999999999999864 346788874
No 89
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=94.97 E-value=0.044 Score=57.26 Aligned_cols=69 Identities=14% Similarity=0.090 Sum_probs=59.0
Q ss_pred CccCcEEEEEEEEEecceEEEEeCCCeEEEEeCCCCCcccccccCCCCcccCCCEEEEEEEEEeC-CeEEEEE
Q 005707 260 FVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISR-GQVTLTM 331 (681)
Q Consensus 260 lkvGdIV~G~VknVt~~GaFVeIg~GIeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL~IDk-gKI~LSL 331 (681)
.++||+|-|+|+.+....+.|+|..-..|+||.+++.... .+....|++||.|.++|+.+++ +...|++
T Consensus 125 P~vGDiVIG~Vt~v~~~~~~VdI~s~~~a~L~~~~f~Gat---k~~r~~f~~GDlV~ArV~s~~~~~~~eLsc 194 (289)
T 2nn6_G 125 PVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGAT---KRNRPNVQVGDLIYGQFVVANKDMEPEMVC 194 (289)
T ss_dssp CCSSEEEEEEEEEEETTEEEEECSSSSCCCEESCSSSCCS---SCSSSSSCTTCEEEEEEEECCTTSCCEEEC
T ss_pred CCCCCEEEEEEEEEeCcEEEEEECCCceeEEehhhcCcch---hhhhhhcCCCCEEEEEEEEcCCCCceEEEe
Confidence 4799999999999999999999998899999998766221 1336789999999999999975 6788988
No 90
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=91.89 E-value=0.55 Score=46.72 Aligned_cols=72 Identities=4% Similarity=-0.028 Sum_probs=53.4
Q ss_pred CCCCCCcEEEEEEEEEecCeeEEEECCCeEEEEeccccCCccccCcc------------cccccCCEEEEEEEEEeccCC
Q 005707 143 EDLIPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFVKDVG------------SIVSVGQEVKVRLIEANAETG 210 (681)
Q Consensus 143 ~~LkvGdIVeGkV~sV~d~GaFVdLgggV~GLVPiSELS~~~v~d~~------------e~fkVGd~VkVkVl~VD~ekg 210 (681)
-....|+++.|+|..+.+.|+.+-+-|....+||...|..++.-++. +--++|+.|+++|.+++..++
T Consensus 125 FrPf~GevL~G~V~~~s~~~Ig~~~~G~Fn~~Ip~~~ip~~~~f~~~~~~~~~~~wv~~~~~~ig~~IRFrV~~~~~~~~ 204 (214)
T 2rf4_A 125 WQPQVGDVLEGYIFIQSASHIGLLIHDAFNASIKKNNIPVDWTFVHNDGNRSLGHWVDSNGEPIDGKLRFTVRNVHTTGR 204 (214)
T ss_dssp ECCCTTCEEEEEECCCCSSCEEEEETTTEEEEECSTTSCSSCBCCCCSCC-CCCCCBCSSCCBCCSEEEEEEEEEECCSS
T ss_pred EecCCCCEEEEEEEEECCCcEEEEEeCCEEEEEcHHHCCCcccccccccccCCCceEcCCCCCCCCEEEEEEEEEEecCC
Confidence 36789999999999999988877666668899999998644322111 112369999999999987655
Q ss_pred ceEE
Q 005707 211 RISL 214 (681)
Q Consensus 211 rI~L 214 (681)
.+.+
T Consensus 205 ~lsI 208 (214)
T 2rf4_A 205 VVSV 208 (214)
T ss_dssp SCEE
T ss_pred EEEE
Confidence 5443
No 91
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=87.51 E-value=4.3 Score=35.19 Aligned_cols=59 Identities=24% Similarity=0.318 Sum_probs=44.9
Q ss_pred CccCcEEEEEEEEEecceE-EEEeCCC-eEEEEeCCCCCcccccccCCCCcccCCCEEEEEEEEEeC-Ce
Q 005707 260 FVKGQDLEGTVKNLTRSGA-FISLPEG-EEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISR-GQ 326 (681)
Q Consensus 260 lkvGdIV~G~VknVt~~Ga-FVeIg~G-IeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL~IDk-gK 326 (681)
....+...|+|+... .|. ||.-.+| -+-|+|.+.+... ...+..||.|.+.|..-++ +|
T Consensus 13 ~s~~~~~~G~Vkwf~-KGfGFI~~ddgg~DVFvH~s~i~~~-------~~~L~~G~~V~F~v~~~~k~Gk 74 (89)
T 1wfq_A 13 TSAALRETGVIEKLL-TSYGFIQCSERQARLFFHCSQYNGN-------LQDLKVGDDVEFEVSSDRRTGK 74 (89)
T ss_dssp SSCCCEEEEEEEEEC-SSEEEEEETTTTEEEEEETTTCSSC-------TTTCCTTCCEEEEEEECSSSCC
T ss_pred CCcccccceEEEEEe-CCeeEEecCCCCccEEEEhHHhhCc-------cCCCCCCCEEEEEEEECCCCCC
Confidence 445567899999985 433 7877665 8999999998753 2578999999999877666 64
No 92
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=87.41 E-value=1.5 Score=38.58 Aligned_cols=55 Identities=11% Similarity=-0.050 Sum_probs=47.3
Q ss_pred CCcEEEEEEEEEecCeeEEEECCCeEEEEeccccCCccc-----cC-cccccccCCEEEEE
Q 005707 147 PGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSRLSDNFV-----KD-VGSIVSVGQEVKVR 201 (681)
Q Consensus 147 vGdIVeGkV~sV~d~GaFVdLgggV~GLVPiSELS~~~v-----~d-~~e~fkVGd~VkVk 201 (681)
.|..+.|.|+++.+.++-|.+.++-.+.|+...+.|.+- .. +.+.+++|+.|.|+
T Consensus 33 ~~~~~~AvV~~v~~~~~~v~~~~g~~~~l~~~~~~WA~~~~~~~~~~~~~~l~~GdvI~V~ 93 (106)
T 3d0f_A 33 SDDILAAVVLSATPGAVEAFRKNGETIRITGDGLKAAHRFLSNDPKIGEKRIRPGALIRVK 93 (106)
T ss_dssp TTTCEEEEEEEEETTEEEEEETTSCEEEECGGGGSTTGGGTTTCTTTGGGSCCTTEEEEEE
T ss_pred cCCeEEEEEEEeCCCeEEEEEcCCCeEEEcHHHChhhhhcccccccchhccCCCCCEEEEE
Confidence 388999999999999999999776888899999998742 33 56779999999998
No 93
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=85.87 E-value=2 Score=37.19 Aligned_cols=64 Identities=27% Similarity=0.271 Sum_probs=47.6
Q ss_pred ccccCCccCcEEEEEEEEEec-ceEEEEeCC-CeEEEEeCCCCCcccccccCCCCcccCCCEEEEEEEEEeCCe
Q 005707 255 MKTTKFVKGQDLEGTVKNLTR-SGAFISLPE-GEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISRGQ 326 (681)
Q Consensus 255 ~~~sklkvGdIV~G~VknVt~-~GaFVeIg~-GIeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL~IDkgK 326 (681)
..+.....++...|+|+...+ || ||.-.+ |-+-|+|.+.+... ...+..||.|.+.+..-.++|
T Consensus 8 ~l~~~~~~~~~~~G~Vk~f~kGfG-FI~~ddgg~DvFvH~S~i~~~-------~~~L~~G~~V~F~~~~g~~Gk 73 (88)
T 2yty_A 8 RLLGRNSNSKRLLGYVATLKDNFG-FIETANHDKEIFFHYSEFSGD-------VDSLELGDMVEYSLSKGKGNK 73 (88)
T ss_dssp SCCCCCSSCCCEEEEEEEECSSEE-EEECSSSSCEEEEETTTCCSC-------TTTCCTTCEEEECCCCCSCSC
T ss_pred EEEeccCCCCceeEEEEEEECCcc-EEecCCCCceEEEEEhhhccc-------cCcCCCCCEEEEEEEECCCCC
Confidence 345555578889999999973 34 888765 69999999988754 257899999998875544453
No 94
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=84.15 E-value=1.7 Score=38.11 Aligned_cols=58 Identities=14% Similarity=0.040 Sum_probs=48.0
Q ss_pred ccCcEEEEEEEEEecceEEEEeCCCeEEEEeCCCCCcccc-cc--cC-CCCcccCCCEEEEE
Q 005707 261 VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGF-AN--MM-GGSSLQVGQEVSVR 318 (681)
Q Consensus 261 kvGdIV~G~VknVt~~GaFVeIg~GIeGLLpiSELSd~~i-e~--~~-p~~~fkVGqkVkVr 318 (681)
..|+.+.+.|.++.+.++-|.+.+|-.+.|+...|.|.+- .. .. +...|++||.|.|+
T Consensus 32 ~~~~~~~AvV~~v~~~~~~v~~~~g~~~~l~~~~~~WA~~~~~~~~~~~~~~l~~GdvI~V~ 93 (106)
T 3d0f_A 32 NSDDILAAVVLSATPGAVEAFRKNGETIRITGDGLKAAHRFLSNDPKIGEKRIRPGALIRVK 93 (106)
T ss_dssp TTTTCEEEEEEEEETTEEEEEETTSCEEEECGGGGSTTGGGTTTCTTTGGGSCCTTEEEEEE
T ss_pred ccCCeEEEEEEEeCCCeEEEEEcCCCeEEEcHHHChhhhhcccccccchhccCCCCCEEEEE
Confidence 3489999999999999999999888999999999999852 00 11 34669999999998
No 95
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=83.17 E-value=3.5 Score=40.92 Aligned_cols=68 Identities=10% Similarity=-0.023 Sum_probs=48.3
Q ss_pred cccCCccCcEEEEEEEEEecceEEEEeCCCeEEEEeCCCCCcccccccCC----------CCcccCCCEEEEEEEEEe
Q 005707 256 KTTKFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMG----------GSSLQVGQEVSVRVLRIS 323 (681)
Q Consensus 256 ~~sklkvGdIV~G~VknVt~~GaFVeIg~GIeGLLpiSELSd~~ie~~~p----------~~~fkVGqkVkVrVL~ID 323 (681)
..-+-.+|+++.|+|+.+.+.|+.+-+-+-.+.+||...+...+.-+... ...-++|+.|++||..++
T Consensus 123 iVFrPf~GevL~G~V~~~s~~~Ig~~~~G~Fn~~Ip~~~ip~~~~f~~~~~~~~~~~wv~~~~~~ig~~IRFrV~~~~ 200 (214)
T 2rf4_A 123 YVWQPQVGDVLEGYIFIQSASHIGLLIHDAFNASIKKNNIPVDWTFVHNDGNRSLGHWVDSNGEPIDGKLRFTVRNVH 200 (214)
T ss_dssp EEECCCTTCEEEEEECCCCSSCEEEEETTTEEEEECSTTSCSSCBCCCCSCC-CCCCCBCSSCCBCCSEEEEEEEEEE
T ss_pred EEEecCCCCEEEEEEEEECCCcEEEEEeCCEEEEEcHHHCCCcccccccccccCCCceEcCCCCCCCCEEEEEEEEEE
Confidence 45567799999999999999877765555778899998875332101000 111236999999999997
No 96
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=82.52 E-value=6.5 Score=31.89 Aligned_cols=54 Identities=31% Similarity=0.500 Sum_probs=41.2
Q ss_pred EEEEEEEEec---ceEEEEeCCCeEEEEeCCCCCcccccccCCCCcccCCCEEEEEEEEEeCCe
Q 005707 266 LEGTVKNLTR---SGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISRGQ 326 (681)
Q Consensus 266 V~G~VknVt~---~GaFVeIg~GIeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL~IDkgK 326 (681)
..|+|+...+ || ||.-.+|-+-|+|.+.+.... ...+..||.|.+.+..-++|.
T Consensus 2 ~~G~Vk~fn~~kGfG-FI~~~~g~dvFvH~s~i~~~g------~~~l~~G~~V~f~~~~~~kG~ 58 (66)
T 1c9o_A 2 QRGKVKWFNNEKGYG-FIEVEGGSDVFVHFTAIQGEG------FKTLEEGQEVSFEIVQGNRGP 58 (66)
T ss_dssp EEEEEEEEETTTTEE-EEEETTEEEEEEEGGGBCSSS------CCCCCTTCEEEEEEEEETTEE
T ss_pred CceEEEEEECCCCeE-EEecCCCccEEEEHHHccccC------CCCCCCCCEEEEEEEECCCCc
Confidence 3689999853 45 888777899999999887543 246899999999987655553
No 97
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=81.26 E-value=2.9 Score=36.76 Aligned_cols=51 Identities=27% Similarity=0.325 Sum_probs=39.9
Q ss_pred cCcEEEEEEEEEecceE-EEEeCCC-eEEEEeCCCCCcccccccCCCCcccCCCEEEEEEE
Q 005707 262 KGQDLEGTVKNLTRSGA-FISLPEG-EEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVL 320 (681)
Q Consensus 262 vGdIV~G~VknVt~~Ga-FVeIg~G-IeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL 320 (681)
......|+|+.. ..|. ||.-.+| -+-|+|.+.+... ...+..||.|.+.+.
T Consensus 15 ~~~~~~G~Vkwf-~KGfGFI~~ddg~~DvFvH~s~i~~~-------~~~L~~G~~V~F~v~ 67 (97)
T 2ytx_A 15 KQARCQGVVCAM-KEAFGFIERGDVVKEIFFHYSEFKGD-------LETLQPGDDVEFTIK 67 (97)
T ss_dssp CCCCEEEEECCC-CSSEEEEECSSSCCCEEEETTTCCSC-------TTSCCSCCEEEEEEC
T ss_pred CCcceeEEEEEE-eCCceEEecCCCCceEEEEehHhccc-------cCCCCCCCEEEEEEE
Confidence 367789999998 4444 8887664 8999999988754 246899999999884
No 98
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=80.61 E-value=2.1 Score=47.28 Aligned_cols=57 Identities=14% Similarity=0.102 Sum_probs=41.9
Q ss_pred ccCcEEEEEEEEEecceEEEEeCCCeEEEEeCCCCCcccccccCCCCcccCCCEEEEEEEEEe--CCeEEEEE
Q 005707 261 VKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTM 331 (681)
Q Consensus 261 kvGdIV~G~VknVt~~GaFVeIg~GIeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL~ID--kgKI~LSL 331 (681)
.+|+.+.|.|..+. +..|+++++++..+. .....|+.||.|+|+|.++| +++|.+..
T Consensus 402 ~~g~~f~g~vv~l~----------~~~glV~v~~l~~d~----~~~~~~~lGd~V~V~v~~vd~~~~~i~f~~ 460 (469)
T 2r7d_A 402 QPERVWDAVVVDRR----------GAQATLLIPDLAFDV----QVNTPAAPGTALQVQFADIDLPQMRVRARS 460 (469)
T ss_dssp CTTCCEEEEEEEEE----------TTEEEEEEGGGTEEE----EEECCCCTTCEEEEEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEEEEEe----------CcEEEEEECCCCeEE----ecCCcCCCCCEEEEEEEEEccCCCEEEEEE
Confidence 57999999875532 346888888876542 11358999999999999998 57776654
No 99
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=79.59 E-value=3.1 Score=35.57 Aligned_cols=63 Identities=22% Similarity=0.233 Sum_probs=45.4
Q ss_pred cEEEEEEEEEecCeeE-EEECCCeEEEEeccccCCccccCcccccccCCEEEEEEEEEeccCCceEEE
Q 005707 149 ATFTGKVRSIQPFGAF-IDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLT 215 (681)
Q Consensus 149 dIVeGkV~sV~d~GaF-VdLgggV~GLVPiSELS~~~v~d~~e~fkVGd~VkVkVl~VD~ekgrI~LS 215 (681)
-.++|+|....+.|.| |.+.++..-+.|++ +..+.-.-...+||.|.+.+...|..+++|...
T Consensus 14 ie~~G~Vik~l~n~~f~V~l~nG~~~~c~i~----GK~Rk~~I~Il~GD~V~ve~~~yd~~kgrIi~R 77 (79)
T 3i4o_A 14 IEVEGRVVEPLPNAMFRIELENGHKVLAHIS----GKMRQHYIRILPEDRVVVELSPYDLSRGRIVYR 77 (79)
T ss_dssp SEEEEEEEEEETTTEEEEEETTSCEEEEEEC----HHHHHTTCCCCTTCEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEEEEcCCCEEEEEeCCCCEEEEEeC----cceecCCccCCCCCEEEEEECccCCCcEEEEEE
Confidence 3589999999977764 88987766666653 222222223679999999998888888888764
No 100
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=77.63 E-value=11 Score=31.00 Aligned_cols=55 Identities=27% Similarity=0.446 Sum_probs=41.2
Q ss_pred EEEEEEEEEe---cceEEEEeCCC-eEEEEeCCCCCcccccccCCCCcccCCCEEEEEEEEEeCCe
Q 005707 265 DLEGTVKNLT---RSGAFISLPEG-EEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISRGQ 326 (681)
Q Consensus 265 IV~G~VknVt---~~GaFVeIg~G-IeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL~IDkgK 326 (681)
...|+|+... .|| ||.-.+| -+-|+|.+.+.... ...+..||.|.+.+..-++|.
T Consensus 5 ~~~G~Vk~fn~~kGfG-FI~~~~g~~dvFvH~s~i~~~g------~~~l~~G~~V~f~~~~~~kG~ 63 (71)
T 3i2z_B 5 KIKGNVKWFNESKGFG-FITPEDGSKDVFVHFSAIQTNG------FKTLAEGQRVEFEITNGAKGP 63 (71)
T ss_dssp CEEEEEEEEETTTTEE-EEEETTCCCCEEEEGGGBCCSS------CCCCCTTCEEEEEEEEETTEE
T ss_pred cccEEEEEEECCCCcE-EEecCCCCccEEEEhHHccccc------CcCCCCCCEEEEEEEECCCCC
Confidence 4679999985 356 6776655 89999999887543 246899999999987766553
No 101
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=76.15 E-value=7.7 Score=32.14 Aligned_cols=51 Identities=24% Similarity=0.253 Sum_probs=39.6
Q ss_pred EEEEEEEEec---ceEEEEeCCCeEEEEeCCCCCcccccccCCCCcccCCCEEEEEEEEEe
Q 005707 266 LEGTVKNLTR---SGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRIS 323 (681)
Q Consensus 266 V~G~VknVt~---~GaFVeIg~GIeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL~ID 323 (681)
..|+|+.... || ||.-.+|-+-|+|.+.+.... -..+..||.|.+.+..-+
T Consensus 2 ~~G~Vk~fn~~kGfG-FI~~~~g~dvFvH~s~i~~~g------~~~l~~G~~V~f~~~~~~ 55 (73)
T 3a0j_A 2 QKGRVKWFNAEKGYG-FIEREGDTDVFVHYTAINAKG------FRTLNEGDIVTFDVEPGR 55 (73)
T ss_dssp EEEEEEEEETTTTEE-EEECTTSCCEEEEGGGBCSSS------CSSCCTTCEEEEEEECCS
T ss_pred CCEEEEEEECCCCEE-EEecCCCCcEEEEhhhccccC------CCCCCCCCEEEEEEEECC
Confidence 4689999863 45 888877899999999887543 246899999999876655
No 102
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=74.16 E-value=4.3 Score=32.99 Aligned_cols=52 Identities=31% Similarity=0.409 Sum_probs=39.4
Q ss_pred EEEEEEEec---ceEEEEeCCCeEEEEeCCCCCcccccccCCCCcccCCCEEEEEEEEEeCC
Q 005707 267 EGTVKNLTR---SGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISRG 325 (681)
Q Consensus 267 ~G~VknVt~---~GaFVeIg~GIeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL~IDkg 325 (681)
.|+|+...+ || ||.-.+|-+-|+|.+.+.... -..+..||.|.+.+..-++|
T Consensus 2 ~G~Vk~fn~~kGfG-FI~~~~g~dvFvH~s~i~~~g------~~~l~~G~~V~f~~~~~~~G 56 (66)
T 1g6p_A 2 RGKVKWFDSKKGYG-FITKDEGGDVFVHWSAIEMEG------FKTLKEGQVVEFEIQEGKKG 56 (66)
T ss_dssp CEEEEEEETTTTEE-EEEETTSCBCBBCSSSSCCSS------CCCCCSSSEEEEEEECSSSC
T ss_pred cEEEEEEECCCCEE-EEecCCCceEEEEhHHccccC------CCCCCCCCEEEEEEEECCCC
Confidence 588988853 45 788778899999999887543 25689999999887654444
No 103
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=74.06 E-value=10 Score=31.90 Aligned_cols=56 Identities=20% Similarity=0.255 Sum_probs=40.4
Q ss_pred cEEEEEEEEEec---CeeEEEECCCeEEEEeccccCCccccCcccccccCCEEEEEEEE
Q 005707 149 ATFTGKVRSIQP---FGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIE 204 (681)
Q Consensus 149 dIVeGkV~sV~d---~GaFVdLgggV~GLVPiSELS~~~v~d~~e~fkVGd~VkVkVl~ 204 (681)
....|+|+.... ||++..-.++-+.|+|++.|.......--..+..||.|.+.+..
T Consensus 7 ~~~~G~Vkwfn~~kGfGFI~~~~gg~DvFvH~s~i~~~~~~~g~~~l~~G~~V~f~~~~ 65 (79)
T 1h95_A 7 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVE 65 (79)
T ss_dssp EEEEEEEEEEETTTTEEEEEEGGGTEEEEEEGGGBCSCCCSCCSCSCCSSCEEEEEEEE
T ss_pred cccceEEEEEECCCCcEEEecCCCCccEEEEhHHccccccccccccCCCCCEEEEEEEE
Confidence 457899999973 56666556668999999999764111112346799999999875
No 104
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=73.93 E-value=13 Score=30.29 Aligned_cols=58 Identities=34% Similarity=0.450 Sum_probs=42.4
Q ss_pred EEEEEEEEe---cceEEEEeCC-CeEEEEeCCCCCcccccccCCCCcccCCCEEEEEEEEEeCCeEEEE
Q 005707 266 LEGTVKNLT---RSGAFISLPE-GEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISRGQVTLT 330 (681)
Q Consensus 266 V~G~VknVt---~~GaFVeIg~-GIeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL~IDkgKI~LS 330 (681)
..|+|+... .|| ||.-.+ |-+-|+|.+.+....+ ..+..||.|.+.+..-++|+-...
T Consensus 2 ~~G~Vk~fn~~kGfG-FI~~~~gg~dvFvH~s~i~~~g~------~~l~~G~~V~f~~~~~~kG~~A~~ 63 (67)
T 3cam_A 2 ATGIVKWFNDAKGFG-FITPDEGGEDLFAHFSAINMEGF------KTLKEGQRVSFDVTTGPKGKQAAN 63 (67)
T ss_dssp EEEEEEEEETTTTEE-EEEETTSCCCEEEEGGGBCGGGG------SSCCTTCEEEEEEEEETTEEEEEE
T ss_pred CCEEEEEEECCCCeE-EEecCCCCccEEEEHHHccccCC------CCCCCCCEEEEEEEECCCCccceE
Confidence 368999885 346 777665 7999999999875432 468999999999877666654333
No 105
>1jjg_A M156R; beta barrel, S1 motif, OB fold, MYXV156R, NESG project, structural genomics, EIF-2A homolog, PSI, protein structure initiative; NMR {Myxoma virus} SCOP: b.40.4.5
Probab=73.11 E-value=10 Score=33.55 Aligned_cols=65 Identities=17% Similarity=0.195 Sum_probs=47.4
Q ss_pred cCCCCCCcEEEEEEEEEecCeeEEEECC--CeEEEEec-cccCCccccCcccccccCCEEEEEEEEEecc
Q 005707 142 NEDLIPGATFTGKVRSIQPFGAFIDFGA--FTDGLVHV-SRLSDNFVKDVGSIVSVGQEVKVRLIEANAE 208 (681)
Q Consensus 142 ~~~LkvGdIVeGkV~sV~d~GaFVdLgg--gV~GLVPi-SELS~~~v~d~~e~fkVGd~VkVkVl~VD~e 208 (681)
..+|-+|++.+|.|. ++++-++|.|.+ +.+++|-- -.+-.++..++++.+ +|..|+++|+.+|.-
T Consensus 27 ~~~~~~g~VtkGiVy-~kd~~fyV~L~dY~glEaii~dYvnv~~dr~~klkkkL-VGKtIkVqVIRvD~l 94 (102)
T 1jjg_A 27 AMDLSPGSVHEGIVY-FKDGIFKVRLLGYEGHECILLDYLNYRQDTLDRLKERL-VGRVIKTRVVRADGL 94 (102)
T ss_dssp CCCCCSSCEEEEEEE-EETTEEEEECTTTSSCEEEECTTCCSSCCCCCHHHHHH-TTCEEEEEEEEECSS
T ss_pred ccccCCCceEeeEEE-EeCCEEEEEecCCCCceeeeehhhhhhHHHHHHHHHHh-cCceEEEEEEEeccE
Confidence 568999999999875 678888999943 47777642 223334445555554 899999999999864
No 106
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=72.69 E-value=20 Score=29.90 Aligned_cols=48 Identities=15% Similarity=0.215 Sum_probs=36.9
Q ss_pred EEEEEEEEEe---cCeeEEEECCCeEEEEeccccCCccccCcccccccCCEEEEEEEE
Q 005707 150 TFTGKVRSIQ---PFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIE 204 (681)
Q Consensus 150 IVeGkV~sV~---d~GaFVdLgggV~GLVPiSELS~~~v~d~~e~fkVGd~VkVkVl~ 204 (681)
...|+|+... .||++..-.|+-+ |+|++.|.... .+..||.|.+.+..
T Consensus 2 ~~~G~Vkwfn~~KGfGFI~~~dg~~d-FvH~s~i~~~g------~l~~G~~V~F~~~~ 52 (74)
T 2k5n_A 2 AMNGTITTWFKDKGFGFIKDENGDNR-YFHVIKVANPD------LIKKDAAVTFEPTT 52 (74)
T ss_dssp CEEEEEEEEETTTTEEEEEESSSCEE-EEEGGGBSSGG------GCCTTCEEEEEEEE
T ss_pred CcceEEEEEECCCCeEEEecCCCCce-EEEHhHcccCC------CCCCCCEEEEEEEe
Confidence 3689999997 3566655566567 99999997642 47899999999875
No 107
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=72.18 E-value=5.9 Score=33.21 Aligned_cols=60 Identities=25% Similarity=0.261 Sum_probs=43.4
Q ss_pred EEEEEEEec---ceEEEEeCCCeEEEEeCCCCC-cccccccCCCCcccCCCEEEEEEEEEeCCeEEEEEec
Q 005707 267 EGTVKNLTR---SGAFISLPEGEEGFLPTSEES-DDGFANMMGGSSLQVGQEVSVRVLRISRGQVTLTMKK 333 (681)
Q Consensus 267 ~G~VknVt~---~GaFVeIg~GIeGLLpiSELS-d~~ie~~~p~~~fkVGqkVkVrVL~IDkgKI~LSLK~ 333 (681)
.|+|+.... || ||.-.+|-+-|+|.+.+. ...+ ..+..||.|.+.+..-++|.-...++.
T Consensus 2 ~G~Vkwfn~~KGfG-FI~~~dG~DvFvH~s~i~~~~g~------~~l~~G~~V~F~~~~g~kG~~A~~V~~ 65 (74)
T 2kcm_A 2 KGKVVSYLAAKKYG-FIQGDDGESYFLHFSELLDKKDE------GKLVKGSMVHFDPTPTPKGLAAKAISL 65 (74)
T ss_dssp EEEEEEEETTTTEE-EEEETTSCEECCCGGGSSCSGGG------TTCCTTSEEEEEEECTTTSCEEEEEEC
T ss_pred CEEEEEEECCCCEE-EEecCCCceEEEEhhhcccCCCC------CCCCCCCEEEEEEEECCCCceeEEEEE
Confidence 588998853 45 888777899999999887 4432 468999999998765455654444443
No 108
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=72.06 E-value=13 Score=32.22 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=39.6
Q ss_pred CCcEEEEEEEEEe-cCeeEEEECCCeEEEEeccccCCccccCcccccccCCEEEEEEEE
Q 005707 147 PGATFTGKVRSIQ-PFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIE 204 (681)
Q Consensus 147 vGdIVeGkV~sV~-d~GaFVdLgggV~GLVPiSELS~~~v~d~~e~fkVGd~VkVkVl~ 204 (681)
..+...|+|+... .||++..-.++-+.|+|++.|... . ..+..||.|.+.+..
T Consensus 15 ~~~~~~G~Vkwf~KGfGFI~~ddgg~DVFvH~s~i~~~-~----~~L~~G~~V~F~v~~ 68 (89)
T 1wfq_A 15 AALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGN-L----QDLKVGDDVEFEVSS 68 (89)
T ss_dssp CCCEEEEEEEEECSSEEEEEETTTTEEEEEETTTCSSC-T----TTCCTTCCEEEEEEE
T ss_pred cccccceEEEEEeCCeeEEecCCCCccEEEEhHHhhCc-c----CCCCCCCEEEEEEEE
Confidence 3467899999996 244444445568999999999764 2 347799999999876
No 109
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=71.92 E-value=6 Score=36.67 Aligned_cols=57 Identities=19% Similarity=0.165 Sum_probs=41.2
Q ss_pred CCCcEEEEEEEEEecCeeEEEECCCe--EEEEeccccCCccccCcccccccCCEEEEEE
Q 005707 146 IPGATFTGKVRSIQPFGAFIDFGAFT--DGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202 (681)
Q Consensus 146 kvGdIVeGkV~sV~d~GaFVdLgggV--~GLVPiSELS~~~v~d~~e~fkVGd~VkVkV 202 (681)
+.|.-+.|+|+.+.+.+++|.+.+.. .--+|.+++..-.-......|.+||+|+|.-
T Consensus 13 ~~G~~y~a~V~~v~~d~~~V~f~n~w~~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~~ 71 (128)
T 3h8z_A 13 SNGAFYKGFVKDVHEDSVTIFFENNWQSERQIPFGDVRLPPPADYNKEITEGDEVEVYS 71 (128)
T ss_dssp TTSCEEEEEEEEECSSEEEEEETTCTTCCEEEEGGGEECCCCC----CCCTTCEEEEEE
T ss_pred CCCCEEEEEEEEEeCCcEEEEEccccCcceEechhhEEcCCCcccccCCCCCCEEEEEe
Confidence 34999999999999999999997644 3577877776433223335689999999743
No 110
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=68.97 E-value=11 Score=35.62 Aligned_cols=52 Identities=17% Similarity=0.299 Sum_probs=40.5
Q ss_pred CcEEEEEEEEEec---CeeEEEECCCeEEEEeccccCCccccCcccccccCCEEEEEEEEE
Q 005707 148 GATFTGKVRSIQP---FGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEA 205 (681)
Q Consensus 148 GdIVeGkV~sV~d---~GaFVdLgggV~GLVPiSELS~~~v~d~~e~fkVGd~VkVkVl~V 205 (681)
|+.+.|+|+.... ||++..-.|+-+.|+|++.|... ..+..||.|.+.|...
T Consensus 60 g~m~~GtVKwFn~~KGfGFI~~ddGg~DVFVH~Sai~~~------~~L~eGq~V~Fev~~~ 114 (147)
T 3aqq_A 60 GPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE------YVPVEGDEVTYKMCSI 114 (147)
T ss_dssp SCCEEEEEEEEETTTTEEEEEESSSCSCEEEEGGGEESS------BCCCTTCEEEEEEEEC
T ss_pred CCccceEEEEEeCCCCeEEeccCCCCccEEEEeeeecCC------CcCCCCCEEEEEEEec
Confidence 6678999999973 56665556668999999999643 1578999999998764
No 111
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=68.10 E-value=7.9 Score=33.38 Aligned_cols=54 Identities=20% Similarity=0.280 Sum_probs=40.6
Q ss_pred CCCcEEEEEEEEEec-CeeEEEECCCeEEEEeccccCCccccCcccccccCCEEEEEEEE
Q 005707 146 IPGATFTGKVRSIQP-FGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIE 204 (681)
Q Consensus 146 kvGdIVeGkV~sV~d-~GaFVdLgggV~GLVPiSELS~~~v~d~~e~fkVGd~VkVkVl~ 204 (681)
..++...|+|+...+ ||++..-.++-+.|+|++.|... . ..+..||.|.+.+..
T Consensus 14 ~~~~~~~G~Vk~f~kGfGFI~~ddgg~DvFvH~S~i~~~-~----~~L~~G~~V~F~~~~ 68 (88)
T 2yty_A 14 SNSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGD-V----DSLELGDMVEYSLSK 68 (88)
T ss_dssp SSCCCEEEEEEEECSSEEEEECSSSSCEEEEETTTCCSC-T----TTCCTTCEEEECCCC
T ss_pred CCCCceeEEEEEEECCccEEecCCCCceEEEEEhhhccc-c----CcCCCCCEEEEEEEE
Confidence 357889999999973 44444445568999999999765 2 347799999988754
No 112
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=67.29 E-value=15 Score=30.21 Aligned_cols=51 Identities=24% Similarity=0.343 Sum_probs=38.3
Q ss_pred EEEEEEEEEec---CeeEEEECCCeEEEEeccccCCccccCcccccccCCEEEEEEEE
Q 005707 150 TFTGKVRSIQP---FGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIE 204 (681)
Q Consensus 150 IVeGkV~sV~d---~GaFVdLgggV~GLVPiSELS~~~v~d~~e~fkVGd~VkVkVl~ 204 (681)
...|+|+...+ ||++..-.++-+.|+|++.|...-. ..+..||.|.+.+..
T Consensus 5 ~~~G~Vk~fn~~kGfGFI~~~~g~~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~ 58 (71)
T 3i2z_B 5 KIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGF----KTLAEGQRVEFEITN 58 (71)
T ss_dssp CEEEEEEEEETTTTEEEEEETTCCCCEEEEGGGBCCSSC----CCCCTTCEEEEEEEE
T ss_pred cccEEEEEEECCCCcEEEecCCCCccEEEEhHHcccccC----cCCCCCCEEEEEEEE
Confidence 37899999973 5655555565899999999975422 236799999999876
No 113
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=66.81 E-value=20 Score=33.88 Aligned_cols=72 Identities=11% Similarity=0.057 Sum_probs=55.6
Q ss_pred CcEEEEEEEEEecCeeE-EEECCCeEEEEeccccCCccccCcccccccCCEEEEEEEEEeccCCceEEEEeccchhhH
Q 005707 148 GATFTGKVRSIQPFGAF-IDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDISK 224 (681)
Q Consensus 148 GdIVeGkV~sV~d~GaF-VdLgggV~GLVPiSELS~~~v~d~~e~fkVGd~VkVkVl~VD~ekgrI~LSlK~l~~dp~ 224 (681)
-..+.|+|+...+++.| |.+.++..-+.|++- .++. .-.+..||.|.|-+...|..+++|..-.+.-+...+
T Consensus 30 ege~~g~V~e~lgn~~f~V~l~nG~~~La~I~G----KmRk-~IwI~~GD~VlVe~~~yd~~KG~Ii~r~~~devk~L 102 (143)
T 1d7q_A 30 DGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRG----KLRK-KVWINTSDIILVGLRDYQDNKADVILKYNADEARSL 102 (143)
T ss_dssp TTEEEEEEEEECSSSEEEEEETTTEEEEEECCS----GGGG-SCCCCTTCEEEEECSSSSSSCCEEEEEECTTTHHHH
T ss_pred CCEEEEEEEEEcCCCEEEEEeCCCCEEEEEecc----ccee-eEEecCCCEEEEeeccCCCCeEEEEEEeCHHHHHHH
Confidence 34688999999999887 888888999988743 2333 455889999999998888888999888775554443
No 114
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=66.70 E-value=27 Score=29.15 Aligned_cols=59 Identities=15% Similarity=0.280 Sum_probs=41.1
Q ss_pred EEEEEEEEEe---cceEEEEeCCC-eEEEEeCCCCCcccccccCCCCcccCCCEEEEEEEEEeCCeEEEEEec
Q 005707 265 DLEGTVKNLT---RSGAFISLPEG-EEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISRGQVTLTMKK 333 (681)
Q Consensus 265 IV~G~VknVt---~~GaFVeIg~G-IeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL~IDkgKI~LSLK~ 333 (681)
...|+|+... .|| ||.-.+| -+ |+|.+.+... . .++.||.|.+.+..-++|.-...++.
T Consensus 2 ~~~G~Vkwfn~~KGfG-FI~~~dg~~d-FvH~s~i~~~-------g-~l~~G~~V~F~~~~g~kG~~A~~V~~ 64 (74)
T 2k5n_A 2 AMNGTITTWFKDKGFG-FIKDENGDNR-YFHVIKVANP-------D-LIKKDAAVTFEPTTNNKGLSAYAVKV 64 (74)
T ss_dssp CEEEEEEEEETTTTEE-EEEESSSCEE-EEEGGGBSSG-------G-GCCTTCEEEEEEEECSSSEEEEEEEE
T ss_pred CcceEEEEEECCCCeE-EEecCCCCce-EEEHhHcccC-------C-CCCCCCEEEEEEEeCCCCceeEEEEe
Confidence 3579999985 346 7776554 56 9999987643 1 68999999999876556644444433
No 115
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=65.96 E-value=20 Score=31.12 Aligned_cols=67 Identities=25% Similarity=0.316 Sum_probs=44.7
Q ss_pred EEEEEEEEEe---cceEEEEe--------CCCeEEEEeCCCCCcccccccCCCCcccCCCEEEEEEEEEeCCeEEEEEec
Q 005707 265 DLEGTVKNLT---RSGAFISL--------PEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISRGQVTLTMKK 333 (681)
Q Consensus 265 IV~G~VknVt---~~GaFVeI--------g~GIeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL~IDkgKI~LSLK~ 333 (681)
...|+|+-.. -|| ||.. .+|.+-|+|.+.+....+ ..|..||.|.+.|..=+++.-.+.+..
T Consensus 8 r~tG~VKWFn~~KGfG-FI~~~~~~~~p~dgg~DvFVH~s~i~~~g~------~~L~eG~~V~f~v~~g~kG~~A~~Vtg 80 (90)
T 3ulj_A 8 RGSGHCKWFNVRMGFG-FISMTSREGSPLENPVDVFVHQSKLYMEGF------RSLKEGEPVEFTFKKSSKGFESLRVTG 80 (90)
T ss_dssp EEEEEEEEEETTTTEE-EEEEEEETTEEEEEEEEEEEEGGGBCCSSS------CCCCTTCEEEEEEEEETTEEEEEEEEC
T ss_pred ccceEEEEeeCCCCeE-EeEecCcCcCCCCCCccEEEEeehhcccCC------CccCCCCEEEEEEEECCCCcEEEEEEC
Confidence 3579999874 335 7753 346789999998865432 467999999999877666654444433
Q ss_pred cCCCc
Q 005707 334 EDDVG 338 (681)
Q Consensus 334 ~~~DP 338 (681)
....|
T Consensus 81 ~~G~p 85 (90)
T 3ulj_A 81 PGGNP 85 (90)
T ss_dssp GGGCC
T ss_pred CCCcc
Confidence 33333
No 116
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=64.95 E-value=21 Score=29.95 Aligned_cols=61 Identities=23% Similarity=0.259 Sum_probs=43.0
Q ss_pred CcEEEEEEEEEec---ceEEEEeCC-CeEEEEeCCCCCcccccccCCCCcccCCCEEEEEEEEEeCCe
Q 005707 263 GQDLEGTVKNLTR---SGAFISLPE-GEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISRGQ 326 (681)
Q Consensus 263 GdIV~G~VknVt~---~GaFVeIg~-GIeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL~IDkgK 326 (681)
.....|+|+.... || ||.-.+ +-+-|+|.+.+..... ...-..+..||.|.+.+..-++|+
T Consensus 6 ~~~~~G~Vkwfn~~kGfG-FI~~~~gg~DvFvH~s~i~~~~~--~~g~~~l~~G~~V~f~~~~~~kG~ 70 (79)
T 1h95_A 6 ATKVLGTVKWFNVRNGYG-FINRNDTKEDVFVHQTAIKKNNP--RKYLRSVGDGETVEFDVVEGEKGA 70 (79)
T ss_dssp EEEEEEEEEEEETTTTEE-EEEEGGGTEEEEEEGGGBCSCCC--SCCSCSCCSSCEEEEEEEECSSSE
T ss_pred ccccceEEEEEECCCCcE-EEecCCCCccEEEEhHHcccccc--ccccccCCCCCEEEEEEEECCCCc
Confidence 3457899999853 46 666554 7999999999875310 001256899999999987655665
No 117
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=63.51 E-value=29 Score=28.21 Aligned_cols=51 Identities=22% Similarity=0.199 Sum_probs=37.7
Q ss_pred EEEEEEEEec---CeeEEEECCCeEEEEeccccCCccccCcccccccCCEEEEEEEEE
Q 005707 151 FTGKVRSIQP---FGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEA 205 (681)
Q Consensus 151 VeGkV~sV~d---~GaFVdLgggV~GLVPiSELS~~~v~d~~e~fkVGd~VkVkVl~V 205 (681)
..|+|+...+ ||++..-.++-+.|+|++.|...-. ..+..||.|.+.+..-
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~gg~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~~ 55 (67)
T 3cam_A 2 ATGIVKWFNDAKGFGFITPDEGGEDLFAHFSAINMEGF----KTLKEGQRVSFDVTTG 55 (67)
T ss_dssp EEEEEEEEETTTTEEEEEETTSCCCEEEEGGGBCGGGG----SSCCTTCEEEEEEEEE
T ss_pred CCEEEEEEECCCCeEEEecCCCCccEEEEHHHccccCC----CCCCCCCEEEEEEEEC
Confidence 3799999973 5655555556899999999975422 2367999999998763
No 118
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=61.85 E-value=35 Score=28.15 Aligned_cols=51 Identities=22% Similarity=0.262 Sum_probs=35.9
Q ss_pred EEEEEEEEec-Cee-EEEECCCeEEEEeccccCCccccCcccccccCCEEEEEEEEE
Q 005707 151 FTGKVRSIQP-FGA-FIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEA 205 (681)
Q Consensus 151 VeGkV~sV~d-~Ga-FVdLgggV~GLVPiSELS~~~v~d~~e~fkVGd~VkVkVl~V 205 (681)
..|+|+.... .|. |+.-.++-+.|+|++.|...-+ ..+..||.|.+.+..-
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~~ 54 (73)
T 3a0j_A 2 QKGRVKWFNAEKGYGFIEREGDTDVFVHYTAINAKGF----RTLNEGDIVTFDVEPG 54 (73)
T ss_dssp EEEEEEEEETTTTEEEEECTTSCCEEEEGGGBCSSSC----SSCCTTCEEEEEEECC
T ss_pred CCEEEEEEECCCCEEEEecCCCCcEEEEhhhccccCC----CCCCCCCEEEEEEEEC
Confidence 4799999973 333 4444333899999999975432 2367999999988753
No 119
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=61.60 E-value=20 Score=33.54 Aligned_cols=62 Identities=23% Similarity=0.359 Sum_probs=44.5
Q ss_pred EEEEEEEEEe---cceEEEEeC--------CCeEEEEeCCCCCcccccccCCCCcccCCCEEEEEEEEEeCCeEEEEEec
Q 005707 265 DLEGTVKNLT---RSGAFISLP--------EGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISRGQVTLTMKK 333 (681)
Q Consensus 265 IV~G~VknVt---~~GaFVeIg--------~GIeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL~IDkgKI~LSLK~ 333 (681)
.+.|+|+-.. .|| ||.-. ++.+-|+|.+.|....+ ..|..||.|.+.|..-+++.-...+..
T Consensus 9 ~~~G~Vkwfn~~kGfG-FI~~~~~~g~p~~~g~DvFvH~s~i~~~g~------~~l~eG~~V~f~~~~g~kG~~A~~V~~ 81 (148)
T 3ts2_A 9 HGAGICKWFNVRMGFG-FLSMTARAGVALDPPVDVFVHQSKLHMEGF------RSLKEGEAVEFTFKKSAKGLESIRVTG 81 (148)
T ss_dssp EEEEEEEEEETTTTEE-EEEEEEETTEEEEEEEEEEEEGGGBCSSSS------CCCCTTCEEEEEEEEETTEEEEEEEES
T ss_pred cceeEEEEEECCCCee-EEeeCccccccCCCCccEEEEhHHhcccCC------ccCCCCCEEEEEEEEccccchhhcccc
Confidence 4679999985 345 67654 47899999998865432 468999999999887766644444433
No 120
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.52 E-value=14 Score=33.38 Aligned_cols=75 Identities=13% Similarity=-0.010 Sum_probs=54.7
Q ss_pred CCCCCcEEEEEEEEEecCeeE-EEECCCeEEEEeccccCCccccCcccccccCCEEEEEEEEEe-ccCCceEEEEeccch
Q 005707 144 DLIPGATFTGKVRSIQPFGAF-IDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEAN-AETGRISLTMRESDD 221 (681)
Q Consensus 144 ~LkvGdIVeGkV~sV~d~GaF-VdLgggV~GLVPiSELS~~~v~d~~e~fkVGd~VkVkVl~VD-~ekgrI~LSlK~l~~ 221 (681)
.+..|+ +.|+|+....++.| |.+.++..-+.|++- +++. .-.+..||.|.|.....| ..+++|..-.+.-+.
T Consensus 11 ~p~ege-~~g~V~~~lgn~~f~V~l~nG~~~la~i~G----K~Rk-~IwI~~GD~VlVe~~~yd~~~kg~Iv~r~~~~qv 84 (111)
T 2dgy_A 11 VPSNQQ-QIVRVLRTPGNNLHEVETAQGQRFLVSMPS----KYRK-NIWIKRGDFLIVDPIEEGEKVKAEISFVLCKDHV 84 (111)
T ss_dssp CCCSSC-EEEEEEECCSSSEEEEECTTSCEEEEECCT----TCCS-CCCCCSSCEEEEEECSSCSSCCEEEEEECCHHHH
T ss_pred CCCCCe-EEEEEEEeCCCCEEEEEeCCCCEEEEEech----hhcc-cEEEcCCCEEEEEecccCCcceEEEEEEeCHHHH
Confidence 344554 78999999998887 788888888888743 2232 445889999999988877 667888887775444
Q ss_pred hhH
Q 005707 222 ISK 224 (681)
Q Consensus 222 dp~ 224 (681)
..+
T Consensus 85 k~L 87 (111)
T 2dgy_A 85 RSL 87 (111)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 121
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=56.68 E-value=22 Score=31.08 Aligned_cols=50 Identities=18% Similarity=0.294 Sum_probs=37.6
Q ss_pred CcEEEEEEEEEecCee-EEEE-CCCeEEEEeccccCCccccCcccccccCCEEEEEEE
Q 005707 148 GATFTGKVRSIQPFGA-FIDF-GAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203 (681)
Q Consensus 148 GdIVeGkV~sV~d~Ga-FVdL-gggV~GLVPiSELS~~~v~d~~e~fkVGd~VkVkVl 203 (681)
.....|+|+.. ..|+ |+.- .++-+.|+|++.|... . ..+..||.|.+.+.
T Consensus 16 ~~~~~G~Vkwf-~KGfGFI~~ddg~~DvFvH~s~i~~~-~----~~L~~G~~V~F~v~ 67 (97)
T 2ytx_A 16 QARCQGVVCAM-KEAFGFIERGDVVKEIFFHYSEFKGD-L----ETLQPGDDVEFTIK 67 (97)
T ss_dssp CCCEEEEECCC-CSSEEEEECSSSCCCEEEETTTCCSC-T----TSCCSCCEEEEEEC
T ss_pred CcceeEEEEEE-eCCceEEecCCCCceEEEEehHhccc-c----CCCCCCCEEEEEEE
Confidence 56689999988 5444 4444 4558999999999765 2 34779999999985
No 122
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=55.64 E-value=13 Score=34.38 Aligned_cols=55 Identities=22% Similarity=0.183 Sum_probs=37.7
Q ss_pred cCcEEEEEEEEEecceEEEEeCCCe--EEEEeCCCCCcccccccCCCCcccCCCEEEEE
Q 005707 262 KGQDLEGTVKNLTRSGAFISLPEGE--EGFLPTSEESDDGFANMMGGSSLQVGQEVSVR 318 (681)
Q Consensus 262 vGdIV~G~VknVt~~GaFVeIg~GI--eGLLpiSELSd~~ie~~~p~~~fkVGqkVkVr 318 (681)
-|.-+.|+|+.|.+.+++|.+.+.- .-.+|.+++---.-. .....|.+||+|.|.
T Consensus 14 ~G~~y~a~V~~v~~d~~~V~f~n~w~~~~~vp~~~vRlpP~~--~~~~~f~~gd~VEV~ 70 (128)
T 3h8z_A 14 NGAFYKGFVKDVHEDSVTIFFENNWQSERQIPFGDVRLPPPA--DYNKEITEGDEVEVY 70 (128)
T ss_dssp TSCEEEEEEEEECSSEEEEEETTCTTCCEEEEGGGEECCCCC------CCCTTCEEEEE
T ss_pred CCCEEEEEEEEEeCCcEEEEEccccCcceEechhhEEcCCCc--ccccCCCCCCEEEEE
Confidence 4999999999999999999998643 345565554321100 113578999999986
No 123
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=54.37 E-value=26 Score=28.30 Aligned_cols=49 Identities=24% Similarity=0.283 Sum_probs=35.1
Q ss_pred EEEEEEEEec---CeeEEEECCCeEEEEeccccCCccccCcccccccCCEEEEEEEE
Q 005707 151 FTGKVRSIQP---FGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIE 204 (681)
Q Consensus 151 VeGkV~sV~d---~GaFVdLgggV~GLVPiSELS~~~v~d~~e~fkVGd~VkVkVl~ 204 (681)
+.|+|+...+ ||++ .-.++-+.|+|++.|...-+ ..+..||.|.+.+..
T Consensus 1 m~G~Vk~fn~~kGfGFI-~~~~g~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~ 52 (66)
T 1g6p_A 1 MRGKVKWFDSKKGYGFI-TKDEGGDVFVHWSAIEMEGF----KTLKEGQVVEFEIQE 52 (66)
T ss_dssp CCEEEEEEETTTTEEEE-EETTSCBCBBCSSSSCCSSC----CCCCSSSEEEEEEEC
T ss_pred CcEEEEEEECCCCEEEE-ecCCCceEEEEhHHccccCC----CCCCCCCEEEEEEEE
Confidence 3689999873 4544 44444899999999975422 236799999988864
No 124
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=53.74 E-value=35 Score=32.22 Aligned_cols=53 Identities=26% Similarity=0.415 Sum_probs=41.1
Q ss_pred ccCcEEEEEEEEEe---cceEEEEeCC-CeEEEEeCCCCCcccccccCCCCcccCCCEEEEEEEEE
Q 005707 261 VKGQDLEGTVKNLT---RSGAFISLPE-GEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRI 322 (681)
Q Consensus 261 kvGdIV~G~VknVt---~~GaFVeIg~-GIeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL~I 322 (681)
..|....|+|+-.. .|| ||.-.+ |-+-|+|++.+... ..+..||.|.+.|...
T Consensus 58 ~~g~m~~GtVKwFn~~KGfG-FI~~ddGg~DVFVH~Sai~~~--------~~L~eGq~V~Fev~~~ 114 (147)
T 3aqq_A 58 SQGPVYKGVCKCFCRSKGHG-FITPADGGPDIFLHISDVEGE--------YVPVEGDEVTYKMCSI 114 (147)
T ss_dssp HHSCCEEEEEEEEETTTTEE-EEEESSSCSCEEEEGGGEESS--------BCCCTTCEEEEEEEEC
T ss_pred ccCCccceEEEEEeCCCCeE-EeccCCCCccEEEEeeeecCC--------CcCCCCCEEEEEEEec
Confidence 45788999999985 356 777665 48999999987521 3789999999998764
No 125
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=53.44 E-value=38 Score=27.25 Aligned_cols=49 Identities=24% Similarity=0.388 Sum_probs=35.9
Q ss_pred EEEEEEEEec---CeeEEEECCCeEEEEeccccCCccccCcccccccCCEEEEEEEE
Q 005707 151 FTGKVRSIQP---FGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIE 204 (681)
Q Consensus 151 VeGkV~sV~d---~GaFVdLgggV~GLVPiSELS~~~v~d~~e~fkVGd~VkVkVl~ 204 (681)
..|+|+...+ ||++..-.| -+.|+|++.|..... ..+..|+.|.+.+..
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~g-~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~ 53 (66)
T 1c9o_A 2 QRGKVKWFNNEKGYGFIEVEGG-SDVFVHFTAIQGEGF----KTLEEGQEVSFEIVQ 53 (66)
T ss_dssp EEEEEEEEETTTTEEEEEETTE-EEEEEEGGGBCSSSC----CCCCTTCEEEEEEEE
T ss_pred CceEEEEEECCCCeEEEecCCC-ccEEEEHHHccccCC----CCCCCCCEEEEEEEE
Confidence 4799999973 455444445 899999999976432 236799999998875
No 126
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=52.91 E-value=34 Score=28.53 Aligned_cols=60 Identities=18% Similarity=0.179 Sum_probs=40.3
Q ss_pred EEEEEEEEec---CeeEEEECCCeEEEEeccccC-CccccCcccccccCCEEEEEEEEEeccCCceEEEEe
Q 005707 151 FTGKVRSIQP---FGAFIDFGAFTDGLVHVSRLS-DNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMR 217 (681)
Q Consensus 151 VeGkV~sV~d---~GaFVdLgggV~GLVPiSELS-~~~v~d~~e~fkVGd~VkVkVl~VD~ekgrI~LSlK 217 (681)
+.|+|+.... ||++..-+| -+.|+|++.|. ..-+ ..+..||.|.+.+.. ..++.-....+
T Consensus 1 ~~G~Vkwfn~~KGfGFI~~~dG-~DvFvH~s~i~~~~g~----~~l~~G~~V~F~~~~--g~kG~~A~~V~ 64 (74)
T 2kcm_A 1 MKGKVVSYLAAKKYGFIQGDDG-ESYFLHFSELLDKKDE----GKLVKGSMVHFDPTP--TPKGLAAKAIS 64 (74)
T ss_dssp CEEEEEEEETTTTEEEEEETTS-CEECCCGGGSSCSGGG----TTCCTTSEEEEEEEC--TTTSCEEEEEE
T ss_pred CCEEEEEEECCCCEEEEecCCC-ceEEEEhhhcccCCCC----CCCCCCCEEEEEEEE--CCCCceeEEEE
Confidence 3689999973 455554455 89999999997 4422 236799999998864 23454333333
No 127
>1h9m_A MODG, molybdenum-binding-protein; molybdate homeostasis; 1.65A {Azotobacter vinelandii} SCOP: b.40.6.2 b.40.6.2 PDB: 1h9k_A 1h9j_A
Probab=52.77 E-value=89 Score=27.25 Aligned_cols=49 Identities=24% Similarity=0.271 Sum_probs=27.9
Q ss_pred cEEEEEEEEEecceE----EEEeCCCeEEEEeCCCCCcccccccCCCCcccCCCEEEEEE
Q 005707 264 QDLEGTVKNLTRSGA----FISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRV 319 (681)
Q Consensus 264 dIV~G~VknVt~~Ga----FVeIg~GIeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrV 319 (681)
..+.|+|..+...|. .|++++|..-.......+.. ...+++|+.|.+.+
T Consensus 82 N~l~g~V~~i~~~G~~~~v~v~~~~g~~l~a~it~~~~~-------~l~l~~G~~V~~~~ 134 (145)
T 1h9m_A 82 NILTGTVKTIETGAVNAEVTLALQGGTEITSMVTKEAVA-------ELGLKPGASASAVI 134 (145)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTSCEEEEEEEHHHHH-------HTTCCTTCEEEEEE
T ss_pred EEEEEEEEEEEeCCceEEEEEEeCCCCEEEEEEcHHHHh-------hcCCCCCCEEEEEE
Confidence 468999999987775 34554443322221111111 12468899998764
No 128
>1jjg_A M156R; beta barrel, S1 motif, OB fold, MYXV156R, NESG project, structural genomics, EIF-2A homolog, PSI, protein structure initiative; NMR {Myxoma virus} SCOP: b.40.4.5
Probab=49.82 E-value=54 Score=29.01 Aligned_cols=67 Identities=21% Similarity=0.225 Sum_probs=45.7
Q ss_pred ccccCCccCcEEEEEEEEEecceEEEEeCC--CeEEEEeCC-CCCcccccccCCCCcccCCCEEEEEEEEEeCC
Q 005707 255 MKTTKFVKGQDLEGTVKNLTRSGAFISLPE--GEEGFLPTS-EESDDGFANMMGGSSLQVGQEVSVRVLRISRG 325 (681)
Q Consensus 255 ~~~sklkvGdIV~G~VknVt~~GaFVeIg~--GIeGLLpiS-ELSd~~ie~~~p~~~fkVGqkVkVrVL~IDkg 325 (681)
....++-+|++.+|.|. +.++-++|.|.+ |.++++--. .+..++.+.+ ++. =+|..|+++|+++|.-
T Consensus 25 ~~~~~~~~g~VtkGiVy-~kd~~fyV~L~dY~glEaii~dYvnv~~dr~~kl--kkk-LVGKtIkVqVIRvD~l 94 (102)
T 1jjg_A 25 TSAMDLSPGSVHEGIVY-FKDGIFKVRLLGYEGHECILLDYLNYRQDTLDRL--KER-LVGRVIKTRVVRADGL 94 (102)
T ss_dssp SCCCCCCSSCEEEEEEE-EETTEEEEECTTTSSCEEEECTTCCSSCCCCCHH--HHH-HTTCEEEEEEEEECSS
T ss_pred eeccccCCCceEeeEEE-EeCCEEEEEecCCCCceeeeehhhhhhHHHHHHH--HHH-hcCceEEEEEEEeccE
Confidence 45678899999999886 567778888864 789987532 1111221111 122 3799999999999864
No 129
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=49.02 E-value=23 Score=30.22 Aligned_cols=60 Identities=18% Similarity=0.210 Sum_probs=41.5
Q ss_pred EEEEEEEEEecceE-EEEeCCCeEEEEeCCCCCcccccccCCCCcccCCCEEEEEEEEEe--CCeEEEE
Q 005707 265 DLEGTVKNLTRSGA-FISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLT 330 (681)
Q Consensus 265 IV~G~VknVt~~Ga-FVeIg~GIeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL~ID--kgKI~LS 330 (681)
.+.|+|....+.|. +|.+.+|..-++|++=--.. -.-++.+||.|.+.+...| +++|...
T Consensus 15 e~~G~Vik~l~n~~f~V~l~nG~~~~c~i~GK~Rk------~~I~Il~GD~V~ve~~~yd~~kgrIi~R 77 (79)
T 3i4o_A 15 EVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQ------HYIRILPEDRVVVELSPYDLSRGRIVYR 77 (79)
T ss_dssp EEEEEEEEEETTTEEEEEETTSCEEEEEECHHHHH------TTCCCCTTCEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEEEcCCCEEEEEeCCCCEEEEEeCcceec------CCccCCCCCEEEEEECccCCCcEEEEEE
Confidence 47899999985554 68899998888887521111 1346789999998766554 5666544
No 130
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=46.28 E-value=49 Score=31.21 Aligned_cols=65 Identities=11% Similarity=0.104 Sum_probs=44.7
Q ss_pred CccCcEEEEEEEEEecceEE-EEeCCCeEEEEeCCCCCcccccccCCCCcccCCCEEEEEEEEEe--CCeEEEEE
Q 005707 260 FVKGQDLEGTVKNLTRSGAF-ISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRIS--RGQVTLTM 331 (681)
Q Consensus 260 lkvGdIV~G~VknVt~~GaF-VeIg~GIeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL~ID--kgKI~LSL 331 (681)
++....+.|+|+.....+.| |.+.+|..-|+|++---.. .-++..||.|.|-....+ +++|..-+
T Consensus 27 ~p~ege~~g~V~e~lgn~~f~V~l~nG~~~La~I~GKmRk-------~IwI~~GD~VlVe~~~yd~~KG~Ii~r~ 94 (143)
T 1d7q_A 27 FKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRK-------KVWINTSDIILVGLRDYQDNKADVILKY 94 (143)
T ss_dssp CCCTTEEEEEEEEECSSSEEEEEETTTEEEEEECCSGGGG-------SCCCCTTCEEEEECSSSSSSCCEEEEEE
T ss_pred CCCCCEEEEEEEEEcCCCEEEEEeCCCCEEEEEeccccee-------eEEecCCCEEEEeeccCCCCeEEEEEEe
Confidence 33455688999999888776 7789999999998642211 457899999987743332 34444444
No 131
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=45.90 E-value=45 Score=31.16 Aligned_cols=53 Identities=19% Similarity=0.186 Sum_probs=38.9
Q ss_pred cEEEEEEEEEec---CeeEEEE-------CCCeEEEEeccccCCccccCcccccccCCEEEEEEEEE
Q 005707 149 ATFTGKVRSIQP---FGAFIDF-------GAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEA 205 (681)
Q Consensus 149 dIVeGkV~sV~d---~GaFVdL-------gggV~GLVPiSELS~~~v~d~~e~fkVGd~VkVkVl~V 205 (681)
..+.|+|+-... ||++..- .++.+.|||++.|....+. .+..|+.|.+.|..-
T Consensus 8 ~~~~G~Vkwfn~~kGfGFI~~~~~~g~p~~~g~DvFvH~s~i~~~g~~----~l~eG~~V~f~~~~g 70 (148)
T 3ts2_A 8 LHGAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFR----SLKEGEAVEFTFKKS 70 (148)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCSSSSC----CCCTTCEEEEEEEEE
T ss_pred ccceeEEEEEECCCCeeEEeeCccccccCCCCccEEEEhHHhcccCCc----cCCCCCEEEEEEEEc
Confidence 347899999973 5665543 2458999999999654332 367999999999874
No 132
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold, greek-KEY topology protein; NMR {Homo sapiens}
Probab=42.62 E-value=9 Score=33.20 Aligned_cols=50 Identities=24% Similarity=0.291 Sum_probs=37.5
Q ss_pred EEEEEEEEEe-cceEEEEeCC-CeEEEEeCCCCCcccccccCCCCcccCCCEEEEEEEEEe
Q 005707 265 DLEGTVKNLT-RSGAFISLPE-GEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRIS 323 (681)
Q Consensus 265 IV~G~VknVt-~~GaFVeIg~-GIeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL~ID 323 (681)
...|+|+... .|| ||.-.+ +-+-|+|++.+... ..|+.||.|.+.|..-+
T Consensus 8 r~~G~Vk~f~KGfG-FI~~~~gg~DvFvH~s~i~~~--------~~L~~G~~V~F~v~~g~ 59 (89)
T 1x65_A 8 REMGVIAAMRDGFG-FIKCVDRDVRMFFHFSEILDG--------NQLHIADEVEFTVVPDM 59 (89)
T ss_dssp CEEEEEEECCTTBC-EEEESSSSSCCCCBTTGGGGS--------CCCCTTCCEEECCBCCS
T ss_pred ceeEEEEEEeCCcc-eeecCCCCccEEEEhhhccCC--------CCCCCCCEEEEEEEeCC
Confidence 4679999885 334 787755 68999999987641 46899999998875543
No 133
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=40.99 E-value=17 Score=30.70 Aligned_cols=53 Identities=32% Similarity=0.441 Sum_probs=38.9
Q ss_pred EEEEEEEEEe-cceEEEEeCCC--eEEEEeCCCCCcccccccCCCCcccCCCEEEEEEEEEeC-Ce
Q 005707 265 DLEGTVKNLT-RSGAFISLPEG--EEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISR-GQ 326 (681)
Q Consensus 265 IV~G~VknVt-~~GaFVeIg~G--IeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL~IDk-gK 326 (681)
...|+|+.+. -|| ||.-.+| -+-|+|++.+... ..++.||.|.+.|..-++ ++
T Consensus 8 ~~~G~V~~~~KGfG-FI~~ddg~g~DvFvH~s~i~~g--------~~l~~G~~V~F~v~~~~k~G~ 64 (79)
T 2ytv_A 8 LRRATVECVKDQFG-FINYEVGDSKKLFFHVKEVQDG--------IELQAGDEVEFSVILNQRTGK 64 (79)
T ss_dssp BCCEEEEECCSSEE-EESCCCSSSSSEEEETTTCCSS--------CCCCTTCEEECBCEECSSSCC
T ss_pred cccEEEEEecccce-eEeCCCCCCCcEEEEhHHcCCC--------CcCCCCCEEEEEEEECCCCCC
Confidence 3568888874 345 7877644 8999999988722 367999999999866555 55
No 134
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.85 E-value=55 Score=29.48 Aligned_cols=63 Identities=6% Similarity=0.100 Sum_probs=44.5
Q ss_pred cCcEEEEEEEEEecceEE-EEeCCCeEEEEeCCCCCcccccccCCCCcccCCCEEEEEEEEEe---CCeEEEEEe
Q 005707 262 KGQDLEGTVKNLTRSGAF-ISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRIS---RGQVTLTMK 332 (681)
Q Consensus 262 vGdIV~G~VknVt~~GaF-VeIg~GIeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL~ID---kgKI~LSLK 332 (681)
.| .+.|+|+.....+.| |.+.+|..-++|++---.. .-++..||.|.|.....+ +++|..-++
T Consensus 14 eg-e~~g~V~~~lgn~~f~V~l~nG~~~la~i~GK~Rk-------~IwI~~GD~VlVe~~~yd~~~kg~Iv~r~~ 80 (111)
T 2dgy_A 14 NQ-QQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRK-------NIWIKRGDFLIVDPIEEGEKVKAEISFVLC 80 (111)
T ss_dssp SS-CEEEEEEECCSSSEEEEECTTSCEEEEECCTTCCS-------CCCCCSSCEEEEEECSSCSSCCEEEEEECC
T ss_pred CC-eEEEEEEEeCCCCEEEEEeCCCCEEEEEechhhcc-------cEEEcCCCEEEEEecccCCcceEEEEEEeC
Confidence 45 467899998877765 7788999999998642221 457899999998865544 355555544
No 135
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=39.74 E-value=77 Score=27.42 Aligned_cols=51 Identities=20% Similarity=0.215 Sum_probs=36.6
Q ss_pred EEEEEEEEEec---CeeEEE-------ECCCeEEEEeccccCCccccCcccccccCCEEEEEEEE
Q 005707 150 TFTGKVRSIQP---FGAFID-------FGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIE 204 (681)
Q Consensus 150 IVeGkV~sV~d---~GaFVd-------LgggV~GLVPiSELS~~~v~d~~e~fkVGd~VkVkVl~ 204 (681)
..+|+|+-... ||++.. ..++.+.|||++.|...-++ .+..||.|.+.|..
T Consensus 8 r~tG~VKWFn~~KGfGFI~~~~~~~~p~dgg~DvFVH~s~i~~~g~~----~L~eG~~V~f~v~~ 68 (90)
T 3ulj_A 8 RGSGHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMEGFR----SLKEGEPVEFTFKK 68 (90)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCCSSSC----CCCTTCEEEEEEEE
T ss_pred ccceEEEEeeCCCCeEEeEecCcCcCCCCCCccEEEEeehhcccCCC----ccCCCCEEEEEEEE
Confidence 46899998873 455532 23457999999999654322 36789999999876
No 136
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=45.89 E-value=6.1 Score=32.50 Aligned_cols=51 Identities=27% Similarity=0.277 Sum_probs=38.0
Q ss_pred EEEEEEEEEe---cCeeEEEECCCeEEEEeccccCCccccCcccccccCCEEEEEEEE
Q 005707 150 TFTGKVRSIQ---PFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIE 204 (681)
Q Consensus 150 IVeGkV~sV~---d~GaFVdLgggV~GLVPiSELS~~~v~d~~e~fkVGd~VkVkVl~ 204 (681)
.+.|+|+... .||++..-.++-+.|+|++.|..... ..+..||.|.+.+..
T Consensus 4 ~~~G~Vk~fn~~kGfGFI~~~~gg~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~ 57 (70)
T 2lss_A 4 NIVGKVKWYNSTKNFGFIEQDNGGKDVFVHKSAVDAAGL----HSLEEGQDVIFDLEE 57 (70)
Confidence 4789999876 36776666666899999999975422 236789999988865
No 137
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=39.20 E-value=11 Score=33.69 Aligned_cols=67 Identities=13% Similarity=0.094 Sum_probs=50.2
Q ss_pred cEEEEEEEEEecCeeE-EEECCCeEEEEeccccCCccccCcccccccCCEEEEEEEEEe-ccCCceEEEEeccc
Q 005707 149 ATFTGKVRSIQPFGAF-IDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEAN-AETGRISLTMRESD 220 (681)
Q Consensus 149 dIVeGkV~sV~d~GaF-VdLgggV~GLVPiSELS~~~v~d~~e~fkVGd~VkVkVl~VD-~ekgrI~LSlK~l~ 220 (681)
..+.|+|+...+++.| |.+.+|..-+.|++ ++++. .-.+..||.|.|-....| ..+++|..-.+.-+
T Consensus 20 ~e~~g~V~~~lgn~~~~V~l~nG~~~la~i~----GKmRk-~IwI~~GD~VlVe~~~yd~~~Kg~Iv~r~~~de 88 (102)
T 1jt8_A 20 NEILGIIEQMLGASRVRVRCLDGKTRLGRIP----GRLKN-RIWVREGDVVIVKPWEVQGDQKCDIIWRYTKTQ 88 (102)
T ss_dssp CCEEEEEECSSCSSEEEEEEETTEEEEEECC----HHHHH-HHCCCSCEEEEECCBCCTTSEEEEEEEESSCSH
T ss_pred CEEEEEEEEEcCCCEEEEEECCCCEEEEEEc----cccee-eEEecCCCEEEEEeccCCCCceEEEEEEeCHHH
Confidence 3488999999998887 78877788888864 23333 445789999999988887 66777777665433
No 138
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold, greek-KEY topology protein; NMR {Homo sapiens}
Probab=36.76 E-value=12 Score=32.40 Aligned_cols=50 Identities=16% Similarity=0.263 Sum_probs=37.2
Q ss_pred cEEEEEEEEEe-cCeeEEEECCCeEEEEeccccCCccccCcccccccCCEEEEEEEE
Q 005707 149 ATFTGKVRSIQ-PFGAFIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIE 204 (681)
Q Consensus 149 dIVeGkV~sV~-d~GaFVdLgggV~GLVPiSELS~~~v~d~~e~fkVGd~VkVkVl~ 204 (681)
+...|+|+... .||++-.-.++-+.|+|++.|... ..+++||.|.+.|..
T Consensus 7 ~r~~G~Vk~f~KGfGFI~~~~gg~DvFvH~s~i~~~------~~L~~G~~V~F~v~~ 57 (89)
T 1x65_A 7 GREMGVIAAMRDGFGFIKCVDRDVRMFFHFSEILDG------NQLHIADEVEFTVVP 57 (89)
T ss_dssp CCEEEEEEECCTTBCEEEESSSSSCCCCBTTGGGGS------CCCCTTCCEEECCBC
T ss_pred cceeEEEEEEeCCcceeecCCCCccEEEEhhhccCC------CCCCCCCEEEEEEEe
Confidence 35789999986 345554445568999999999642 357899999988865
No 139
>1fr3_A MOP, molybdate/tungstate binding protein; molybdate homeostasis, metal binding protein; 1.50A {Sporomusa ovata} SCOP: b.40.6.1
Probab=36.11 E-value=48 Score=25.47 Aligned_cols=46 Identities=13% Similarity=0.234 Sum_probs=28.4
Q ss_pred EEEEEEEEEecCeeE----EEECCC-eEEEEeccccCCccccCcccccccCCEEEEEE
Q 005707 150 TFTGKVRSIQPFGAF----IDFGAF-TDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRL 202 (681)
Q Consensus 150 IVeGkV~sV~d~GaF----VdLggg-V~GLVPiSELS~~~v~d~~e~fkVGd~VkVkV 202 (681)
.+.|+|..+...|.. ++++++ +...+....+ .++ .+++|+.|.+.|
T Consensus 8 ~l~g~V~~i~~~g~~~~v~l~~~~~~l~a~it~~s~-----~~l--~L~~G~~V~~~i 58 (67)
T 1fr3_A 8 KLEATVKEIVKGTVMAKIVMDYKGTELVAAITIDSV-----ADL--DLVPGDKVTALV 58 (67)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTEEEEEEEEHHHH-----HHH--TCCTTCEEEEEE
T ss_pred EEEEEEEEEEeCCceEEEEEEeCCCEEEEEeCHHHH-----HhC--CCCCCCEEEEEE
Confidence 589999999987743 344453 2222332211 122 378999999886
No 140
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=35.67 E-value=15 Score=30.99 Aligned_cols=50 Identities=20% Similarity=0.224 Sum_probs=35.9
Q ss_pred cEEEEEEEEEe-cCeeEEEECC-CeEEEEeccccCCccccCcccccccCCEEEEEEEE
Q 005707 149 ATFTGKVRSIQ-PFGAFIDFGA-FTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIE 204 (681)
Q Consensus 149 dIVeGkV~sV~-d~GaFVdLgg-gV~GLVPiSELS~~~v~d~~e~fkVGd~VkVkVl~ 204 (681)
+...|+|..+. .||++..-.+ +-+.|+|++.|... ..++.||.|.+.+..
T Consensus 7 ~~~~G~V~~~~KGfGFI~~ddg~g~DvFvH~s~i~~g------~~l~~G~~V~F~v~~ 58 (79)
T 2ytv_A 7 GLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDG------IELQAGDEVEFSVIL 58 (79)
T ss_dssp SBCCEEEEECCSSEEEESCCCSSSSSEEEETTTCCSS------CCCCTTCEEECBCEE
T ss_pred CcccEEEEEecccceeEeCCCCCCCcEEEEhHHcCCC------CcCCCCCEEEEEEEE
Confidence 34678888875 3555544434 48999999999732 247899999998875
No 141
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=39.40 E-value=9 Score=31.48 Aligned_cols=53 Identities=28% Similarity=0.381 Sum_probs=38.7
Q ss_pred EEEEEEEEEe---cceEEEEeCC-CeEEEEeCCCCCcccccccCCCCcccCCCEEEEEEEEEeC
Q 005707 265 DLEGTVKNLT---RSGAFISLPE-GEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISR 324 (681)
Q Consensus 265 IV~G~VknVt---~~GaFVeIg~-GIeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL~IDk 324 (681)
.+.|+|+... .|| ||.-.+ |-+-|+|.+.+.... ...+..||.|.+.+..-++
T Consensus 4 ~~~G~Vk~fn~~kGfG-FI~~~~gg~dvFvH~s~i~~~g------~~~l~~G~~V~f~~~~~~~ 60 (70)
T 2lss_A 4 NIVGKVKWYNSTKNFG-FIEQDNGGKDVFVHKSAVDAAG------LHSLEEGQDVIFDLEEKQG 60 (70)
Confidence 4678898874 356 676655 689999999887543 2467999999988765443
No 142
>2jpp_A Translational repressor; RNA recognition, protein/RNA, CSRA, RSMA, shine-dalgarno; NMR {Pseudomonas fluorescens}
Probab=32.33 E-value=32 Score=28.83 Aligned_cols=31 Identities=23% Similarity=0.537 Sum_probs=27.2
Q ss_pred CCCcccCCCEEEEEEEEEeCCeEEEEEeccC
Q 005707 305 GGSSLQVGQEVSVRVLRISRGQVTLTMKKED 335 (681)
Q Consensus 305 p~~~fkVGqkVkVrVL~IDkgKI~LSLK~~~ 335 (681)
..+.+.+|+.|.+.|+.++.+++.|.+.+..
T Consensus 8 ~GEsI~IGd~I~ItVl~v~g~~VrLGI~APk 38 (70)
T 2jpp_A 8 VGESINIGDDITITILGVSGQQVRIGINAPK 38 (70)
T ss_dssp TTCEEEETTTEEEEEEEEETTEEEEEEECCT
T ss_pred CCCeEEECCCEEEEEEEEeCCEEEEEEECCC
Confidence 4678889999999999999999999997653
No 143
>2bti_A Carbon storage regulator homolog; RMSA, CSRA, RNA binding protein; 2.0A {Yersinia enterocolitica} PDB: 1y00_A
Probab=30.25 E-value=37 Score=27.88 Aligned_cols=31 Identities=32% Similarity=0.527 Sum_probs=27.2
Q ss_pred CCCcccCCCEEEEEEEEEeCCeEEEEEeccC
Q 005707 305 GGSSLQVGQEVSVRVLRISRGQVTLTMKKED 335 (681)
Q Consensus 305 p~~~fkVGqkVkVrVL~IDkgKI~LSLK~~~ 335 (681)
+.+.+..|+.+.+.|+.++.+++.|.+.+..
T Consensus 10 ~GE~I~Igd~I~I~Vl~i~g~~VrlGI~AP~ 40 (63)
T 2bti_A 10 VGETLMIGDEVTVTVLGVKGNQVRIGVNAPK 40 (63)
T ss_dssp TTCEEEETTTEEEEEEEEETTEEEEEEEECT
T ss_pred CCCeEEeCCCEEEEEEEEeCCEEEEEEECCC
Confidence 4678889999999999999999999997653
No 144
>1gut_A Mopii, molybdate binding protein II; transport protein; 1.50A {Clostridium pasteurianum} SCOP: b.40.6.1 PDB: 1gun_A 1guo_A 1gus_A 1gug_A
Probab=29.90 E-value=62 Score=25.15 Aligned_cols=47 Identities=15% Similarity=0.233 Sum_probs=29.0
Q ss_pred EEEEEEEEEecCeeE----EEECCC--eEEEEeccccCCccccCcccccccCCEEEEEEE
Q 005707 150 TFTGKVRSIQPFGAF----IDFGAF--TDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLI 203 (681)
Q Consensus 150 IVeGkV~sV~d~GaF----VdLggg--V~GLVPiSELS~~~v~d~~e~fkVGd~VkVkVl 203 (681)
.+.|+|.++...|.. ++++++ +...+.... ..++ .+++|+.|.+.+-
T Consensus 8 ~l~g~V~~i~~~g~~~~V~l~~~~g~~l~a~it~~s-----~~~l--~L~~G~~V~a~ik 60 (68)
T 1gut_A 8 QLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLDS-----VEEL--GVKEGAELTAVVK 60 (68)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTSCEEEEEEEHHH-----HHHH--TCCTTCEEEEECC
T ss_pred EEEEEEEEEEeCCceEEEEEEeCCCCEEEEEeCHHH-----HHHC--CCCCCCEEEEEEe
Confidence 589999999988753 445433 333333221 1222 2789999998753
No 145
>1yez_A MM1357; MAR30, autostructure, northeast structural genomics, PSI, PR structure initiative, northeast structural genomics consort NESG; NMR {Methanosarcina mazei} SCOP: b.40.4.12
Probab=29.78 E-value=2.1e+02 Score=22.71 Aligned_cols=53 Identities=28% Similarity=0.417 Sum_probs=37.7
Q ss_pred CCccCcEEEEEEEEEecceEEEEeCCCeEEEEeCCCCCcccccccCCCCcccCCCEEEEEEEEEeCCeE
Q 005707 259 KFVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISRGQV 327 (681)
Q Consensus 259 klkvGdIV~G~VknVt~~GaFVeIg~GIeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL~IDkgKI 327 (681)
.++.|+.+..+|..+...|-=|--.+|..-|++.. -+|+.|.++|....++..
T Consensus 10 ~~~~~~~~~~~I~~l~~~G~Gva~~~g~~vfV~~a----------------lPGE~V~v~i~k~kk~~~ 62 (68)
T 1yez_A 10 PVEEGEVYDVTIQDIARQGDGIARIEGFVIFVPGT----------------KVGDEVRIKVERVLPKFA 62 (68)
T ss_dssp SCCTTEEEEEECCEEETTTEEEEEETTEEEEEESC----------------CTTCEEEEEEEEECSSCE
T ss_pred ccCCCCEEEEEEEEcCCCccEEEEECCEEEECcCC----------------CCCCEEEEEEEEecCCEE
Confidence 36789999999998876665443334666777731 469999999998765443
No 146
>1vpz_A Carbon storage regulator homolog; CSRA-like fold, structural genomics, joint center for struct genomics, JCSG; HET: MSE; 2.05A {Pseudomonas aeruginosa} SCOP: b.151.1.1
Probab=29.18 E-value=39 Score=28.58 Aligned_cols=31 Identities=32% Similarity=0.497 Sum_probs=27.4
Q ss_pred CCCCcccCCCEEEEEEEEEeCCeEEEEEecc
Q 005707 304 MGGSSLQVGQEVSVRVLRISRGQVTLTMKKE 334 (681)
Q Consensus 304 ~p~~~fkVGqkVkVrVL~IDkgKI~LSLK~~ 334 (681)
++.+.+.+|+.|.+.|+.+..+++.|.+.+.
T Consensus 19 K~GEsI~IGddI~ItVl~i~g~qVrLGI~AP 49 (73)
T 1vpz_A 19 RVGETLMVGDDVTVTVLGVKGNQVRIGVNAP 49 (73)
T ss_dssp ETTCEEEETTTEEEEEEEEETTEEEEEEEEE
T ss_pred cCCCEEEeCCCEEEEEEEEeCCEEEEEEECC
Confidence 3477889999999999999999999999764
No 147
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=29.01 E-value=67 Score=26.06 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=33.5
Q ss_pred cccCCccCcEEEEEEEEEecc--eEEEEeCCCeEEEEeCCCCC
Q 005707 256 KTTKFVKGQDLEGTVKNLTRS--GAFISLPEGEEGFLPTSEES 296 (681)
Q Consensus 256 ~~sklkvGdIV~G~VknVt~~--GaFVeIg~GIeGLLpiSELS 296 (681)
.+..-.-|..+.|+|+.|... -++|.++++-.-++...+|.
T Consensus 10 VLarwsDG~fYlGtI~~V~~~~~~clV~F~D~s~~W~~~kdi~ 52 (58)
T 4hcz_A 10 VLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDIS 52 (58)
T ss_dssp EEEECTTSCEEEEEEEEEETTTTEEEEEETTSCEEEEEGGGEE
T ss_pred EEEEecCCCEEeEEEEEEecCCCEEEEEEcCCCeEEEEhHHcc
Confidence 344455699999999999877 59999999999999877654
No 148
>1gut_A Mopii, molybdate binding protein II; transport protein; 1.50A {Clostridium pasteurianum} SCOP: b.40.6.1 PDB: 1gun_A 1guo_A 1gus_A 1gug_A
Probab=27.47 E-value=47 Score=25.89 Aligned_cols=47 Identities=19% Similarity=0.353 Sum_probs=28.3
Q ss_pred cEEEEEEEEEecceEE----EEeCCCe--EEEEeCCCCCcccccccCCCCcccCCCEEEEEE
Q 005707 264 QDLEGTVKNLTRSGAF----ISLPEGE--EGFLPTSEESDDGFANMMGGSSLQVGQEVSVRV 319 (681)
Q Consensus 264 dIV~G~VknVt~~GaF----VeIg~GI--eGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrV 319 (681)
..+.|+|.++...|.. +++++|. ...+... +.. .-.+++|+.|.+.|
T Consensus 7 N~l~g~V~~i~~~g~~~~V~l~~~~g~~l~a~it~~--s~~-------~l~L~~G~~V~a~i 59 (68)
T 1gut_A 7 NQLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLD--SVE-------ELGVKEGAELTAVV 59 (68)
T ss_dssp CEEEEEEEEEEECSSEEEEEEEETTSCEEEEEEEHH--HHH-------HHTCCTTCEEEEEC
T ss_pred eEEEEEEEEEEeCCceEEEEEEeCCCCEEEEEeCHH--HHH-------HCCCCCCCEEEEEE
Confidence 3589999999888743 3444443 3333321 111 13578999998775
No 149
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=27.14 E-value=1.1e+02 Score=27.64 Aligned_cols=71 Identities=20% Similarity=0.104 Sum_probs=45.2
Q ss_pred cCCCCCCcEEEEEEEEEecCee-EEEECCCeEEEEeccccCCccccCcccccccCCEEEEEEEEEeccCCceEEEEec
Q 005707 142 NEDLIPGATFTGKVRSIQPFGA-FIDFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRE 218 (681)
Q Consensus 142 ~~~LkvGdIVeGkV~sV~d~Ga-FVdLgggV~GLVPiSELS~~~v~d~~e~fkVGd~VkVkVl~VD~ekgrI~LSlK~ 218 (681)
+.....|+. .|+|+.....|. .|.+.++..-+++++ ..++. .-...+||.|.+.+...|..+++|..-...
T Consensus 26 ~~~~~~~e~-~G~Vi~~lgn~~y~V~~~dG~~~l~~i~----GK~Rk-~I~i~~GD~V~ve~~~~~~~kG~I~~~~~r 97 (117)
T 2oqk_A 26 LVFKEEGQE-YGQVQRMLGNGRLDAYCFDGQKRLCHIR----GKMRK-KVWVNPGDIVLVSLRDFQDSKGDIILKYTP 97 (117)
T ss_dssp CCCCCTTEE-EEEEEEEEETTEEEEEETTSCEEEEECC----HHHHH-HSCCCTTCEEEEEECTTCTTEEEEEEECCH
T ss_pred ccCCCCCEE-EEEEEEEcCCCEEEEEeCCCCEEEEEEc----Cceec-CCcCCCCCEEEEEEEcCCCCeEEEEEEech
Confidence 335556765 799999999655 477876666666653 22332 334569999998876445445566554443
No 150
>1fr3_A MOP, molybdate/tungstate binding protein; molybdate homeostasis, metal binding protein; 1.50A {Sporomusa ovata} SCOP: b.40.6.1
Probab=25.52 E-value=56 Score=25.06 Aligned_cols=47 Identities=21% Similarity=0.255 Sum_probs=27.8
Q ss_pred cEEEEEEEEEecceEE----EEeCCC-eEEEEeCCCCCcccccccCCCCcccCCCEEEEEE
Q 005707 264 QDLEGTVKNLTRSGAF----ISLPEG-EEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRV 319 (681)
Q Consensus 264 dIV~G~VknVt~~GaF----VeIg~G-IeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrV 319 (681)
..+.|+|..+...|.. ++++++ +...+... +.. ...+++|+.|.+.|
T Consensus 7 N~l~g~V~~i~~~g~~~~v~l~~~~~~l~a~it~~--s~~-------~l~L~~G~~V~~~i 58 (67)
T 1fr3_A 7 NKLEATVKEIVKGTVMAKIVMDYKGTELVAAITID--SVA-------DLDLVPGDKVTALV 58 (67)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTEEEEEEEEHH--HHH-------HHTCCTTCEEEEEE
T ss_pred eEEEEEEEEEEeCCceEEEEEEeCCCEEEEEeCHH--HHH-------hCCCCCCCEEEEEE
Confidence 4689999999887743 334433 12222211 111 13579999999875
No 151
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=25.37 E-value=1.4e+02 Score=24.84 Aligned_cols=40 Identities=15% Similarity=0.306 Sum_probs=32.8
Q ss_pred ccCCccCcEEEEEEEEEec--ceEEEEeCCCeEEEEeCCCCC
Q 005707 257 TTKFVKGQDLEGTVKNLTR--SGAFISLPEGEEGFLPTSEES 296 (681)
Q Consensus 257 ~sklkvGdIV~G~VknVt~--~GaFVeIg~GIeGLLpiSELS 296 (681)
+..+.-|..+.|+|++|.. --|+|++++|..-++...+|.
T Consensus 21 LA~wtDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~w~~~kdi~ 62 (66)
T 2eqj_A 21 LARWSDGLFYLGTIKKINILKQSCFIIFEDSSKSWVLWKDIQ 62 (66)
T ss_dssp EEECTTSCEEEEEEEEEETTTTEEEEEETTTEEEEEETTTEE
T ss_pred EEEEccCcEEEeEEEEEccCCcEEEEEEccCCEEEEEeeccc
Confidence 4445678899999999986 478999999999999876654
No 152
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=24.52 E-value=4.9e+02 Score=25.17 Aligned_cols=150 Identities=19% Similarity=0.193 Sum_probs=80.6
Q ss_pred ccceeEEEEEecCCCCCCCCcceecCCCCCcccccccccccCCChhhHHhhhchhhhhcCCCCCCcCCCCCCcE------
Q 005707 77 SATGINVAVEESDSPAADDDSAGASDIPSDVETSESSSIKSEASPTLAESRRSRTARKSEMPPVKNEDLIPGAT------ 150 (681)
Q Consensus 77 vG~~i~VkVievD~~~~~~~~lvlSer~s~v~~ae~ss~~sea~~daek~~~kr~~rk~e~~~lt~~~LkvGdI------ 150 (681)
+|+.++|.|..++.+.. +.+--. ..+....-+........-....++ ....+++|+.
T Consensus 15 ~~~~~~V~Vt~v~sP~~----Fyvq~~------------~~~~~~~L~~L~~~l~~~~~~~~~-~~~~~~~G~~c~a~~~ 77 (226)
T 4b9x_A 15 VDETVDVVVCMMYSPGE----FYCHFL------------KDDALEKLDDLNQSLADYCAQKPP-NGFKAEIGRPCCAFFS 77 (226)
T ss_dssp TTCEEEEEEEEEEETTE----EEEEEC------------CTTHHHHHHHHHHHHHHHTSSSCC---CCCCTTCEEEEEET
T ss_pred CCCEEEEEEEEEeCCCE----EEEEEc------------CCchHHHHHHHHHHHHHHHhcCCC-CCCCCCCCCEEEEEEC
Confidence 69999999999998876 665221 001001111111111111111111 1234455554
Q ss_pred -----EEEEEEEEecCe-eEEEE-CCCeEEEEeccccCCccccCcccccccCCEEEEEEEEEeccCCceEEEEeccchhh
Q 005707 151 -----FTGKVRSIQPFG-AFIDF-GAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEANAETGRISLTMRESDDIS 223 (681)
Q Consensus 151 -----VeGkV~sV~d~G-aFVdL-gggV~GLVPiSELS~~~v~d~~e~fkVGd~VkVkVl~VD~ekgrI~LSlK~l~~dp 223 (681)
+.|+|.++.+.+ +-|.+ ..|-...|+.++|..=. .+. .--+.+-++|++.++-+..+ .
T Consensus 78 ~d~~WyRa~V~~~~~~~~~~V~~vDyGn~~~v~~~~l~~l~-~~f--~~lP~qA~~c~L~~v~p~~~------------~ 142 (226)
T 4b9x_A 78 GDGNWYRALVKEILPSGNVKVHFVDYGNVEEVTTDQLQAIL-PQF--LLLPFQGMQCWLVDIQPPNK------------H 142 (226)
T ss_dssp TTTEEEEEEEEEECSSSEEEEECTTTCCEEEEEGGGEECCC-GGG--SSSCBCCEEEEESSEECSSS------------S
T ss_pred CCCeEEEEEEEEECCCCeEEEEEEecCCEEEEEHHHhccCh-HHH--cccccceEEEEEecEECCCC------------C
Confidence 678888887665 32322 22246778877763210 011 11367788888877654221 1
Q ss_pred HhhhhccccccCCccccccccCCCCCCccccccccCCccCcEEEEEEEEEecceEEEEeC
Q 005707 224 KLQQQKDATASGDKVRTTRRSTSKPGQKRDEMKTTKFVKGQDLEGTVKNLTRSGAFISLP 283 (681)
Q Consensus 224 ~ek~~~~~p~s~d~~~~k~r~~~k~~~~k~~~~~sklkvGdIV~G~VknVt~~GaFVeIg 283 (681)
|. ......+.++-.|..+.++|..+...++.|.|.
T Consensus 143 w~-------------------------~ea~~~f~~l~~~k~l~~~V~~~~~~~~~V~L~ 177 (226)
T 4b9x_A 143 WT-------------------------KEATARFQACVVGLKLQARVVEITANGVGVELT 177 (226)
T ss_dssp CC-------------------------HHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEE
T ss_pred CC-------------------------HHHHHHHHHHHCCCeEEEEEEEEeCCeEEEEEE
Confidence 20 000133566677889999999999989888874
No 153
>1yvc_A MRR5; structure, autostructure, autoassign, northeast structural genomics, autoqf, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: b.40.4.12
Probab=23.07 E-value=2.5e+02 Score=22.57 Aligned_cols=51 Identities=22% Similarity=0.370 Sum_probs=35.4
Q ss_pred CccCcEEEEEEEEEecceEEEEeCCCeEEEEeCCCCCcccccccCCCCcccCCCEEEEEEEEEeCCe
Q 005707 260 FVKGQDLEGTVKNLTRSGAFISLPEGEEGFLPTSEESDDGFANMMGGSSLQVGQEVSVRVLRISRGQ 326 (681)
Q Consensus 260 lkvGdIV~G~VknVt~~GaFVeIg~GIeGLLpiSELSd~~ie~~~p~~~fkVGqkVkVrVL~IDkgK 326 (681)
++.|+.+..+|..+...|-=|--.+|..-|++. --+|+.|.++|....++.
T Consensus 13 ~~~~~~~~v~I~~l~~~G~Gva~~~g~~vfV~~----------------alPGE~V~v~i~k~kk~~ 63 (70)
T 1yvc_A 13 VEAGKEYEVTIEDMGKGGDGIARIDGFVVFVPN----------------AEKGSVINVKVTAVKEKF 63 (70)
T ss_dssp SCTTCEEEEECCEECTTSCEEEEETTEEEEETT----------------CCTTCEEEEEEEEECSSC
T ss_pred ccCCCEEEEEEEEcCCCccEEEEECCEEEEccC----------------CCCCCEEEEEEEEeeCCe
Confidence 578999999999887665433333465566652 146999999999876543
No 154
>1yez_A MM1357; MAR30, autostructure, northeast structural genomics, PSI, PR structure initiative, northeast structural genomics consort NESG; NMR {Methanosarcina mazei} SCOP: b.40.4.12
Probab=21.47 E-value=2.8e+02 Score=21.96 Aligned_cols=47 Identities=19% Similarity=0.249 Sum_probs=34.8
Q ss_pred CCCCCcEEEEEEEEEecCeeEE-EECCCeEEEEeccccCCccccCcccccccCCEEEEEEEEE
Q 005707 144 DLIPGATFTGKVRSIQPFGAFI-DFGAFTDGLVHVSRLSDNFVKDVGSIVSVGQEVKVRLIEA 205 (681)
Q Consensus 144 ~LkvGdIVeGkV~sV~d~GaFV-dLgggV~GLVPiSELS~~~v~d~~e~fkVGd~VkVkVl~V 205 (681)
.++.|++++.+|.++...|--| .+.+ ...|||. --+|+.|.++|...
T Consensus 10 ~~~~~~~~~~~I~~l~~~G~Gva~~~g-~~vfV~~--------------alPGE~V~v~i~k~ 57 (68)
T 1yez_A 10 PVEEGEVYDVTIQDIARQGDGIARIEG-FVIFVPG--------------TKVGDEVRIKVERV 57 (68)
T ss_dssp SCCTTEEEEEECCEEETTTEEEEEETT-EEEEEES--------------CCTTCEEEEEEEEE
T ss_pred ccCCCCEEEEEEEEcCCCccEEEEECC-EEEECcC--------------CCCCCEEEEEEEEe
Confidence 3567999999999988776533 4444 5677763 23899999999985
No 155
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.48 E-value=2e+02 Score=24.01 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=33.2
Q ss_pred ccCCccCcEEEEEEEEEec--ceEEEEeCCCeEEEEeCCCCCc
Q 005707 257 TTKFVKGQDLEGTVKNLTR--SGAFISLPEGEEGFLPTSEESD 297 (681)
Q Consensus 257 ~sklkvGdIV~G~VknVt~--~GaFVeIg~GIeGLLpiSELSd 297 (681)
+..-.-|-.+.|+|+.|.. --|||.++++..-++...+|..
T Consensus 17 LarWsDGlfYlGtV~kV~~~~~~ClV~FeD~s~~wv~~kdi~~ 59 (68)
T 2e5p_A 17 LARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISP 59 (68)
T ss_dssp EEECTTSSEEEEEEEEEETTTTEEEEEETTTEEEEEETTTEEC
T ss_pred EEEecCCcEEEeEEEEEecCCcEEEEEEccCCeeeeeeecccc
Confidence 4444568889999999985 3699999999999999877654
Done!