BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005708
(681 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 67/161 (41%), Gaps = 11/161 (6%)
Query: 30 PSINTFEDLTGISLMFNDIHEVPDEL--ECPKLQALFLQENSPLAIPDRFFQGMKDLKVL 87
PS+NT E L N + VP + KL+ L+L+ N +IP F + L+ L
Sbjct: 83 PSLNTLE------LFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRL 136
Query: 88 DLGGIRGFSLPSSLSF--LINLRTLSLHDCRRFXXXXXXXXXXXXXXXXXXXXXVSEIPV 145
DLG ++ S +F L+NLR L+L C P
Sbjct: 137 DLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPG 196
Query: 146 SFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHS 186
SF L LR L L + I R+ L+ LEEL +SH+
Sbjct: 197 SFQGLTSLRKLWLMH-AQVATIERNAFDDLKSLEELNLSHN 236
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 67/161 (41%), Gaps = 11/161 (6%)
Query: 30 PSINTFEDLTGISLMFNDIHEVPDEL--ECPKLQALFLQENSPLAIPDRFFQGMKDLKVL 87
PS+NT E L N + VP + KL+ L+L+ N +IP F + L+ L
Sbjct: 83 PSLNTLE------LFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRL 136
Query: 88 DLGGIRGFSLPSSLSF--LINLRTLSLHDCRRFXXXXXXXXXXXXXXXXXXXXXVSEIPV 145
DLG ++ S +F L+NLR L+L C P
Sbjct: 137 DLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPG 196
Query: 146 SFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHS 186
SF L LR L L + I R+ L+ LEEL +SH+
Sbjct: 197 SFQGLTSLRKLWLMH-AQVATIERNAFDDLKSLEELNLSHN 236
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 5/160 (3%)
Query: 31 SINTFEDLTGISLMFNDIHEVPDE--LECPKLQALFLQENSPLAIPDRFFQGMKDLKVLD 88
+ N +L + L N + +P+ + KL+ L+L+ N +IP F + L+ LD
Sbjct: 107 AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLD 166
Query: 89 LGGIRGFSLPSSLSF--LINLRTLSLHDCRRFXXXXXXXXXXXXXXXXXXXXXVSEIPVS 146
LG ++ S S +F L NLR L+L C + P S
Sbjct: 167 LGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGS 226
Query: 147 FGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHS 186
F L HL+ L + +++I R+ +L+ L E+ ++H+
Sbjct: 227 FQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHN 265
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 18 FMIKAGVELKDWPSINTFEDLTGIS---LMFNDIHEVPDEL--ECPKLQALFLQENSPLA 72
++I G +L+ P+ F+ LT + L+ N + +PD + + L L+L N +
Sbjct: 89 YLILTGNQLQSLPN-GVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQS 147
Query: 73 IPDRFFQGMKDLKVLDLGGIRGFSLPSSL-SFLINLRTLSLHD 114
+P F + +L LDL + SLP + L L+ LSL+D
Sbjct: 148 LPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLND 190
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 17 KFMIKAGVELKDWPSINTFEDLTGISLMFNDIHEVPDEL--ECPKLQALFLQENSPLAIP 74
+++ G +L D ++ +LT + L N + +P+ + + L+ L L EN ++P
Sbjct: 66 RYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP 125
Query: 75 DRFFQGMKDLKVLDLGGIRGFSLPSSL-SFLINLRTLSL 112
D F + +L L+L + SLP + L NL L L
Sbjct: 126 DGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL 164
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 38 LTGISLMFNDIHEVPDEL--ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGF 95
LT +SL N I +PD + + KL L+L EN ++P+ F + LK L L +
Sbjct: 54 LTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK 113
Query: 96 SLPSSL-SFLINLRTLSLH 113
S+P + L +L+ + LH
Sbjct: 114 SVPDGIFDRLTSLQKIWLH 132
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 173 SSLRKLEELYMSHSFCHWQFESEEDARSN----AKFIEL--GALSRLTSLHIDIPKGKIM 226
SS++ EE + + + FE EE AR N K+++ GA++ L+ L +D K + +
Sbjct: 3 SSIKTFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQSNGGAINHLSDLSLDEFKNRFL 62
Query: 227 PSDMSFQNLTS 237
S +F++L +
Sbjct: 63 MSAEAFEHLKT 73
>pdb|1PI1|A Chain A, Crystal Structure Of A Human Mob1 Protein; Toward
Understanding Mob-Regulated Cell Cycle Pathways
Length = 185
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 15 KNKFMIKAGVELKDWPSINTFEDLTGISLMFNDIHEVPDELECPKLQA 62
+ M+ G +L +W ++NT + I++++ I E E CP + A
Sbjct: 11 RQAVMLPEGEDLNEWIAVNTVDFFNQINMLYGTITEFCTEASCPVMSA 58
>pdb|2EVX|A Chain A, Crystal Structure Of Pumpkin Seed Globulin
pdb|2E9Q|A Chain A, Recombinant Pro-11s Globulin Of Pumpkin
Length = 459
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 312 DGFNELMFLVIVRCNEMKCLVNSLERTRRVTLHKLEWLAIFLNQNLVEICHGQLPAGCLS 371
D F + +F VR ++ + + +R + EW+A N N + L AG +S
Sbjct: 360 DNFGQSVFDGEVREGQVLMIPQNFVVIKRASDRGFEWIAFKTNDNAIT----NLLAGRVS 415
Query: 372 NVKRLDVGDCGSMLKILPSHLVQSFQNLQRLRVGRCEL 409
++ L +G +M +I S + QRL+ G+ E+
Sbjct: 416 QMRMLPLGVLSNMYRI-------SREEAQRLKYGQQEM 446
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 51/126 (40%), Gaps = 25/126 (19%)
Query: 59 KLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSL-SFLINLRTLSLHDCRR 117
L+ L+L N A+P F + L VLDLG + LPS++ L++L+ L + C +
Sbjct: 65 NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMC-CNK 123
Query: 118 FXXXXXXXXXXXXXXXXXXXXXVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRK 177
+E+P RL HL L L D L+ IP L
Sbjct: 124 L----------------------TELPRGIERLTHLTHLAL-DQNQLKSIPHGAFDRLSS 160
Query: 178 LEELYM 183
L Y+
Sbjct: 161 LTHAYL 166
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 3/130 (2%)
Query: 59 KLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSF--LINLRTLSLHDCR 116
KL+ L+L+ N +IP F + L LDLG ++ S +F L NL+ L+L C
Sbjct: 148 KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207
Query: 117 RFXXXXXXXXXXXXXXXXXXXXXVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLR 176
P SF L L+ L + + + LI R+ L
Sbjct: 208 IKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLA 266
Query: 177 KLEELYMSHS 186
L EL ++H+
Sbjct: 267 SLVELNLAHN 276
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 26/128 (20%)
Query: 59 KLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPS-SLSFLINLRTLSLHDCRR 117
LQ L+LQ+N+ A+PD F+ + +L L L G R S+P + L +L L LH R
Sbjct: 129 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR- 187
Query: 118 FXXXXXXXXXXXXXXXXXXXXXVSEI-PVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLR 176
V+ + P +F LG L L L +L +P + L+ LR
Sbjct: 188 ----------------------VAHVHPHAFRDLGRLMTLYLF-ANNLSALPTEALAPLR 224
Query: 177 KLEELYMS 184
L+ L ++
Sbjct: 225 ALQYLRLN 232
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 26/128 (20%)
Query: 59 KLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPS-SLSFLINLRTLSLHDCRR 117
LQ L+LQ+N+ A+PD F+ + +L L L G R S+P + L +L L LH R
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR- 188
Query: 118 FXXXXXXXXXXXXXXXXXXXXXVSEI-PVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLR 176
V+ + P +F LG L L L +L +P + L+ LR
Sbjct: 189 ----------------------VAHVHPHAFRDLGRLMTLYLF-ANNLSALPTEALAPLR 225
Query: 177 KLEELYMS 184
L+ L ++
Sbjct: 226 ALQYLRLN 233
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 26/128 (20%)
Query: 59 KLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPS-SLSFLINLRTLSLHDCRR 117
LQ L+LQ+N+ A+PD F+ + +L L L G R S+P + L +L L LH
Sbjct: 129 ALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQ--- 185
Query: 118 FXXXXXXXXXXXXXXXXXXXXXVSEI-PVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLR 176
V+ + P +F LG L L L +L ++P +VL LR
Sbjct: 186 --------------------NHVARVHPHAFRDLGRLMTLYLF-ANNLSMLPAEVLVPLR 224
Query: 177 KLEELYMS 184
L+ L ++
Sbjct: 225 SLQYLRLN 232
>pdb|1QQE|A Chain A, Crystal Structure Of The Vesicular Transport Protein Sec17
Length = 292
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 30/59 (50%)
Query: 43 LMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSL 101
++ ND+H+ ++C +L + ++ +A+ ++ F DLK LD I + S L
Sbjct: 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKL 184
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 23 GVELKDWPS--INTFEDLTGISLMFNDIHEVPDEL--ECPKLQALFLQENSPLAIPDRFF 78
G ELK P + L +SL ND+ E+P L L L LQENS IP FF
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 25 ELKDWPSINTFEDLTGISLMFNDIHEVPDELECPKLQALFLQEN 68
+L+D I+ ++LT ++L FN+I ++ KLQ LF N
Sbjct: 294 QLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNN 337
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 25 ELKDWPSINTFEDLTGISLMFNDIHEVPDELECPKLQALFLQEN 68
+L+D I+ ++LT ++L FN+I ++ KLQ LF N
Sbjct: 293 QLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNN 336
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 25 ELKDWPSINTFEDLTGISLMFNDIHEVPDELECPKLQALFLQEN 68
+L+D I+ ++LT ++L FN+I ++ KLQ LF N
Sbjct: 297 QLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANN 340
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 25 ELKDWPSINTFEDLTGISLMFNDIHEVPDELECPKLQALFLQEN 68
+L+D I+ ++LT ++L FN+I ++ KLQ LF N
Sbjct: 294 QLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN 337
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 25 ELKDWPSINTFEDLTGISLMFNDIHEVPDELECPKLQALFLQEN 68
+L+D I+ ++LT ++L FN+I ++ KLQ LF N
Sbjct: 294 QLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN 337
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 25 ELKDWPSINTFEDLTGISLMFNDIHEVPDELECPKLQALFLQEN 68
+L+D I+ ++LT ++L FN+I ++ KLQ LF N
Sbjct: 298 QLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN 341
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 25 ELKDWPSINTFEDLTGISLMFNDIHEVPDELECPKLQALFLQEN 68
+L+D I+ ++LT ++L FN+I ++ KLQ LF N
Sbjct: 293 QLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN 336
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 23 GVELKDWPSINTFEDLTGISLMFNDIHEVPDELECP--KLQALFLQENSPLAIPDRFFQG 80
G L + P+ N E +T I L N I +P P KL+ + L N + FQG
Sbjct: 20 GKGLTEIPT-NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG 78
Query: 81 MKDLKVLDLGGIRGFSLPSSL 101
++ L L L G + LP SL
Sbjct: 79 LRSLNSLVLYGNKITELPKSL 99
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 23 GVELKDWPSINTFEDLTGISLMFNDIHEVPDELECP--KLQALFLQENSPLAIPDRFFQG 80
G L + P+ N E +T I L N I +P P KL+ + L N + FQG
Sbjct: 20 GKGLTEIPT-NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG 78
Query: 81 MKDLKVLDLGGIRGFSLPSSL 101
++ L L L G + LP SL
Sbjct: 79 LRSLNSLVLYGNKITELPKSL 99
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 67 ENSPLAIPDRFFQGMKDLKVLDLGGIRGFSL-PSSLSFLINLRTLSLHDC 115
+ +PL I F+ + +L++LDLG + + L P + L +L L L+ C
Sbjct: 58 QYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC 107
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 35 FEDLTGISLMFNDIHEVPDEL--ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGI 92
+ +LT + L +N++H+V + P L+ L L+ N+ + R F G+ +L+ L L
Sbjct: 247 WTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLK-- 304
Query: 93 RGFS 96
R F+
Sbjct: 305 RAFT 308
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 12/110 (10%)
Query: 21 KAGVELKDWPSINTFEDLTGISLMF---------NDIHEVPDE-LECPKLQALFLQENSP 70
K ++++D +I+T E + + L F N I E+ + +L L L +N+
Sbjct: 130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN 189
Query: 71 LA-IPDRFFQGMKDLKVLDLGGIRGFSLPS-SLSFLINLRTLSLHDCRRF 118
L +P+ F G +LD+ R SLPS L L LR S ++ ++
Sbjct: 190 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKL 239
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,368,570
Number of Sequences: 62578
Number of extensions: 655409
Number of successful extensions: 1490
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1439
Number of HSP's gapped (non-prelim): 62
length of query: 681
length of database: 14,973,337
effective HSP length: 105
effective length of query: 576
effective length of database: 8,402,647
effective search space: 4839924672
effective search space used: 4839924672
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)