Query 005708
Match_columns 681
No_of_seqs 327 out of 3520
Neff 10.2
Searched_HMMs 46136
Date Thu Mar 28 12:33:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005708.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005708hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.6E-35 7.9E-40 344.8 28.9 514 35-622 68-589 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.8E-35 6E-40 345.8 27.0 510 31-617 88-607 (968)
3 PLN03210 Resistant to P. syrin 100.0 1.4E-28 3E-33 288.8 24.2 352 73-555 549-909 (1153)
4 PLN03210 Resistant to P. syrin 99.9 2.8E-24 6E-29 252.6 24.0 378 1-447 490-910 (1153)
5 KOG4194 Membrane glycoprotein 99.9 1.2E-25 2.6E-30 224.5 5.1 385 38-490 54-447 (873)
6 KOG0472 Leucine-rich repeat pr 99.9 2.9E-27 6.3E-32 226.0 -15.5 462 37-550 46-539 (565)
7 KOG0472 Leucine-rich repeat pr 99.9 5.2E-27 1.1E-31 224.2 -14.2 483 56-616 43-540 (565)
8 KOG4194 Membrane glycoprotein 99.9 1.5E-23 3.2E-28 209.7 4.4 342 36-409 78-428 (873)
9 KOG0618 Serine/threonine phosp 99.9 2.5E-24 5.5E-29 226.6 -1.5 417 40-555 2-422 (1081)
10 KOG4658 Apoptotic ATPase [Sign 99.9 3.6E-22 7.7E-27 222.5 15.4 161 1-185 483-651 (889)
11 KOG0618 Serine/threonine phosp 99.9 8.6E-25 1.9E-29 230.0 -9.2 444 38-551 23-488 (1081)
12 KOG0444 Cytoskeletal regulator 99.9 2.6E-24 5.5E-29 216.4 -7.0 200 32-244 51-256 (1255)
13 KOG0444 Cytoskeletal regulator 99.8 1.8E-23 4E-28 210.3 -4.9 175 34-223 5-185 (1255)
14 KOG0617 Ras suppressor protein 99.7 3.9E-19 8.5E-24 150.9 -4.2 159 25-186 22-183 (264)
15 KOG0617 Ras suppressor protein 99.7 5.2E-19 1.1E-23 150.2 -4.3 166 48-229 23-191 (264)
16 PRK15387 E3 ubiquitin-protein 99.5 7.6E-14 1.7E-18 152.9 16.1 170 39-244 204-373 (788)
17 PRK15387 E3 ubiquitin-protein 99.5 1.1E-13 2.4E-18 151.7 16.0 156 58-247 201-356 (788)
18 PRK15370 E3 ubiquitin-protein 99.5 4.9E-14 1.1E-18 155.4 11.3 179 37-245 179-358 (754)
19 KOG4237 Extracellular matrix p 99.5 3.7E-15 7.9E-20 143.5 -0.7 145 41-187 51-199 (498)
20 PRK15370 E3 ubiquitin-protein 99.5 5.7E-13 1.2E-17 147.1 15.0 195 24-249 188-383 (754)
21 KOG4237 Extracellular matrix p 99.5 5E-15 1.1E-19 142.6 -1.4 120 108-239 70-194 (498)
22 KOG4658 Apoptotic ATPase [Sign 99.4 4.5E-13 9.8E-18 150.2 9.0 142 18-160 527-677 (889)
23 KOG4341 F-box protein containi 99.4 1.2E-15 2.6E-20 148.1 -10.3 304 289-621 138-443 (483)
24 PF14580 LRR_9: Leucine-rich r 99.2 9.1E-12 2E-16 111.9 5.0 130 26-158 9-147 (175)
25 cd00116 LRR_RI Leucine-rich re 99.2 1.3E-11 2.7E-16 126.6 6.2 203 34-245 21-262 (319)
26 cd00116 LRR_RI Leucine-rich re 99.2 7.6E-12 1.6E-16 128.2 3.7 197 40-245 2-233 (319)
27 KOG4341 F-box protein containi 99.2 5E-13 1.1E-17 130.1 -6.5 263 283-599 184-449 (483)
28 KOG0532 Leucine-rich repeat (L 99.1 3.6E-12 7.9E-17 128.7 -2.6 174 38-229 77-252 (722)
29 PF14580 LRR_9: Leucine-rich r 99.1 1.4E-10 3E-15 104.3 6.0 128 80-218 17-147 (175)
30 KOG0532 Leucine-rich repeat (L 99.0 1.1E-11 2.3E-16 125.4 -3.0 193 40-250 54-251 (722)
31 KOG1259 Nischarin, modulator o 99.0 5.8E-11 1.3E-15 110.7 -1.3 128 32-162 280-410 (490)
32 KOG1259 Nischarin, modulator o 98.9 1.3E-10 2.7E-15 108.5 -0.0 128 82-223 284-411 (490)
33 COG4886 Leucine-rich repeat (L 98.9 7.7E-10 1.7E-14 116.7 5.9 192 40-247 97-291 (394)
34 COG4886 Leucine-rich repeat (L 98.9 1.3E-09 2.7E-14 115.1 6.1 185 27-228 107-294 (394)
35 KOG3207 Beta-tubulin folding c 98.8 9E-10 2E-14 108.4 0.2 204 32-240 117-333 (505)
36 KOG3207 Beta-tubulin folding c 98.7 2.2E-09 4.8E-14 105.7 -2.0 183 31-223 141-338 (505)
37 PF13855 LRR_8: Leucine rich r 98.5 5.4E-08 1.2E-12 71.7 2.8 59 58-116 1-60 (61)
38 PLN03150 hypothetical protein; 98.5 4.7E-07 1E-11 100.2 9.5 104 83-187 419-526 (623)
39 PLN03150 hypothetical protein; 98.5 4E-07 8.8E-12 100.7 8.9 106 106-223 419-527 (623)
40 KOG0531 Protein phosphatase 1, 98.4 2.4E-08 5.3E-13 105.4 -1.8 191 34-243 70-265 (414)
41 PF13855 LRR_8: Leucine rich r 98.4 1.7E-07 3.7E-12 69.0 3.0 59 36-94 1-61 (61)
42 KOG1909 Ran GTPase-activating 98.4 1.1E-07 2.3E-12 91.6 0.9 181 56-245 90-310 (382)
43 KOG1859 Leucine-rich repeat pr 98.4 4.3E-09 9.2E-14 109.8 -9.3 176 31-223 104-291 (1096)
44 KOG2120 SCF ubiquitin ligase, 98.3 4.3E-08 9.4E-13 91.9 -2.8 177 58-245 185-375 (419)
45 KOG1909 Ran GTPase-activating 98.3 9E-07 2E-11 85.3 5.0 90 149-246 155-254 (382)
46 PRK15386 type III secretion pr 98.3 2.8E-06 6E-11 86.1 8.6 14 539-552 156-169 (426)
47 KOG0531 Protein phosphatase 1, 98.3 7.8E-08 1.7E-12 101.6 -2.6 179 30-228 89-272 (414)
48 KOG2120 SCF ubiquitin ligase, 98.2 1.2E-07 2.7E-12 88.9 -1.8 170 283-468 204-374 (419)
49 KOG3665 ZYG-1-like serine/thre 98.2 9.3E-07 2E-11 97.4 3.4 137 81-223 121-262 (699)
50 PF12799 LRR_4: Leucine Rich r 98.1 3.1E-06 6.8E-11 56.8 3.2 33 84-116 3-35 (44)
51 PRK15386 type III secretion pr 98.1 8.8E-06 1.9E-10 82.5 7.4 140 426-615 48-188 (426)
52 KOG3665 ZYG-1-like serine/thre 98.0 2.7E-06 5.9E-11 93.8 3.8 129 58-188 122-262 (699)
53 KOG1859 Leucine-rich repeat pr 97.9 2E-07 4.3E-12 97.7 -7.5 126 34-163 162-291 (1096)
54 KOG1644 U2-associated snRNP A' 97.9 2E-05 4.3E-10 70.3 5.9 78 39-116 45-124 (233)
55 KOG1947 Leucine rich repeat pr 97.9 2E-06 4.3E-11 93.7 -1.0 120 288-411 187-309 (482)
56 KOG2982 Uncharacterized conser 97.9 1.1E-05 2.3E-10 76.2 3.3 102 60-161 47-156 (418)
57 KOG1947 Leucine rich repeat pr 97.9 6.4E-07 1.4E-11 97.5 -5.6 121 314-444 187-309 (482)
58 PF12799 LRR_4: Leucine Rich r 97.9 2E-05 4.4E-10 52.9 3.8 33 129-161 2-34 (44)
59 KOG1644 U2-associated snRNP A' 97.7 4.9E-05 1.1E-09 67.9 5.4 119 40-161 23-150 (233)
60 KOG4579 Leucine-rich repeat (L 97.7 2.1E-06 4.6E-11 71.3 -2.9 85 58-143 53-138 (177)
61 KOG2982 Uncharacterized conser 97.7 1.3E-05 2.9E-10 75.5 1.1 85 127-223 70-158 (418)
62 KOG4579 Leucine-rich repeat (L 97.7 6.4E-06 1.4E-10 68.6 -1.1 111 58-170 27-141 (177)
63 KOG2123 Uncharacterized conser 97.0 2.5E-05 5.4E-10 73.1 -5.6 84 35-120 18-103 (388)
64 KOG2739 Leucine-rich acidic nu 97.0 0.00031 6.7E-09 65.8 1.5 83 56-141 41-129 (260)
65 KOG2739 Leucine-rich acidic nu 96.7 0.00098 2.1E-08 62.5 2.2 104 32-137 39-152 (260)
66 KOG2123 Uncharacterized conser 96.6 0.00012 2.6E-09 68.7 -3.9 78 104-182 40-123 (388)
67 COG5238 RNA1 Ran GTPase-activa 96.6 0.012 2.7E-07 55.4 8.6 86 102-187 27-131 (388)
68 KOG3864 Uncharacterized conser 96.4 0.00022 4.8E-09 63.9 -3.6 44 511-554 123-166 (221)
69 COG5238 RNA1 Ran GTPase-activa 96.4 0.0053 1.1E-07 57.7 5.1 19 205-223 208-226 (388)
70 PF13306 LRR_5: Leucine rich r 96.4 0.011 2.5E-07 50.9 7.0 115 56-178 10-128 (129)
71 PF00560 LRR_1: Leucine Rich R 95.9 0.0037 8E-08 34.8 1.0 21 129-149 1-21 (22)
72 PF13306 LRR_5: Leucine rich r 95.9 0.025 5.5E-07 48.7 6.9 116 31-153 7-128 (129)
73 PF00560 LRR_1: Leucine Rich R 95.1 0.0065 1.4E-07 33.8 0.3 19 84-102 2-20 (22)
74 KOG3864 Uncharacterized conser 94.9 0.0057 1.2E-07 55.1 -0.7 71 339-411 120-190 (221)
75 PF13504 LRR_7: Leucine rich r 93.7 0.044 9.5E-07 28.1 1.4 16 129-144 2-17 (17)
76 PF13504 LRR_7: Leucine rich r 93.3 0.056 1.2E-06 27.8 1.4 14 83-96 2-15 (17)
77 smart00369 LRR_TYP Leucine-ric 90.9 0.25 5.4E-06 28.6 2.4 21 58-78 2-22 (26)
78 smart00370 LRR Leucine-rich re 90.9 0.25 5.4E-06 28.6 2.4 21 58-78 2-22 (26)
79 KOG0473 Leucine-rich repeat pr 90.8 0.0053 1.1E-07 56.4 -7.1 83 56-140 40-123 (326)
80 KOG0473 Leucine-rich repeat pr 89.8 0.0076 1.6E-07 55.4 -7.0 90 72-162 32-122 (326)
81 smart00369 LRR_TYP Leucine-ric 89.7 0.29 6.3E-06 28.3 2.0 20 127-146 1-20 (26)
82 smart00370 LRR Leucine-rich re 89.7 0.29 6.3E-06 28.3 2.0 20 127-146 1-20 (26)
83 smart00367 LRR_CC Leucine-rich 86.2 0.41 9E-06 27.7 1.2 17 603-619 1-17 (26)
84 KOG4308 LRR-containing protein 76.9 0.049 1.1E-06 58.0 -9.0 177 38-223 89-302 (478)
85 smart00365 LRR_SD22 Leucine-ri 67.6 4.5 9.7E-05 23.5 1.7 17 127-143 1-17 (26)
86 smart00364 LRR_BAC Leucine-ric 66.9 3.6 7.7E-05 23.8 1.2 18 128-145 2-19 (26)
87 PF13516 LRR_6: Leucine Rich r 56.1 6.2 0.00013 22.1 0.9 14 128-141 2-15 (24)
88 KOG4308 LRR-containing protein 53.0 0.17 3.6E-06 54.0 -10.7 180 60-247 89-304 (478)
89 smart00368 LRR_RI Leucine rich 45.7 17 0.00037 21.3 1.7 13 82-94 2-14 (28)
90 KOG3763 mRNA export factor TAP 41.9 15 0.00033 39.1 1.7 37 56-92 216-254 (585)
91 KOG3763 mRNA export factor TAP 23.3 51 0.0011 35.4 1.9 62 33-94 215-282 (585)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.6e-35 Score=344.79 Aligned_cols=514 Identities=19% Similarity=0.187 Sum_probs=318.2
Q ss_pred CCCccEEEccCCCCccC-CCCC-CCCCCcEEEccCCCCC-CCChHHHhCCCCccEEEecCCCC-CCCCccccCCCCCcEE
Q 005708 35 FEDLTGISLMFNDIHEV-PDEL-ECPKLQALFLQENSPL-AIPDRFFQGMKDLKVLDLGGIRG-FSLPSSLSFLINLRTL 110 (681)
Q Consensus 35 l~~lr~L~l~~~~~~~l-~~~~-~~~~Lr~L~l~~~~~~-~l~~~~~~~l~~Lr~L~L~~~~~-~~lp~~i~~l~~L~~L 110 (681)
..+++.|+++++.+... +... .+++|++|++++|.+. .+|.++|..+++||+|++++|.+ +.+|. +.+++|++|
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L 145 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL 145 (968)
T ss_pred CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence 35788899988887643 3333 7889999999998887 78888877889999999998888 45554 567888899
Q ss_pred EccCCCCCCCCc-ccCCCCCccEEEcccCCCc-ccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcc
Q 005708 111 SLHDCRRFGDLP-LIGELSLLEILDLSESDVS-EIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFC 188 (681)
Q Consensus 111 ~L~~~~~~~~l~-~l~~L~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 188 (681)
++++|.....+| .++++++|++|++++|.+. .+|..++++++|++|++++|...+.+|.. ++++++|++|++++|..
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNL 224 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCcc
Confidence 998888555667 7888888999999888775 67888888888999988887777677776 78888888888888753
Q ss_pred cccccchhhhhhccchhhhcCCCCCcEEEEeCCCCC-CCCCC-CCCCCccEEEEEecCCcCCCchhHHHHHhhhcccccc
Q 005708 189 HWQFESEEDARSNAKFIELGALSRLTSLHIDIPKGK-IMPSD-MSFQNLTSFSIKIGDLEEDPLSDFIELFLEKFNKRCS 266 (681)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l 266 (681)
....+..++.+++|++|++++|.+. .+|.. ..+++|+.|.+..+......+.. .....++
T Consensus 225 -----------~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-------l~~l~~L 286 (968)
T PLN00113 225 -----------SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-------IFSLQKL 286 (968)
T ss_pred -----------CCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh-------HhhccCc
Confidence 2246667888888888888888764 44444 67788888888776543221100 1245677
Q ss_pred ceeeeccccchhhhHHHHHHHHhccceeecccccCcccccccccccccCCCcEEEEEecCCceEeeeccccccccccCcc
Q 005708 267 RAMGLSQDMRISALHSWIKNLLLRSEILALAEVNDLENMVSDLANDGFNELMFLVIVRCNEMKCLVNSLERTRRVTLHKL 346 (681)
Q Consensus 267 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L 346 (681)
+.+++.++.-...+|.++.. +++|+.|++.++.........+. .+++|+.|++.+|.-...++. ....+++|
T Consensus 287 ~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~L~~n~l~~~~p~-----~l~~~~~L 358 (968)
T PLN00113 287 ISLDLSDNSLSGEIPELVIQ-LQNLEILHLFSNNFTGKIPVALT--SLPRLQVLQLWSNKFSGEIPK-----NLGKHNNL 358 (968)
T ss_pred CEEECcCCeeccCCChhHcC-CCCCcEEECCCCccCCcCChhHh--cCCCCCEEECcCCCCcCcCCh-----HHhCCCCC
Confidence 77777766443345555443 57788888866654333322232 377888888887743323332 34566778
Q ss_pred ceeeecccccccccccCcCCCCcCCCccEEEEeeCCCCCccccchHHhhcCCCcEEEEeeccCcceeecccccccccccc
Q 005708 347 EWLAIFLNQNLVEICHGQLPAGCLSNVKRLDVGDCGSMLKILPSHLVQSFQNLQRLRVGRCELLESVFEIERVNIAKEET 426 (681)
Q Consensus 347 ~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 426 (681)
+.|+++++.-...++. ....+++|+.|++.++. +....+ ..+..+++|+.|++++|.....++. .+
T Consensus 359 ~~L~Ls~n~l~~~~p~---~~~~~~~L~~L~l~~n~-l~~~~p-~~~~~~~~L~~L~L~~n~l~~~~p~---------~~ 424 (968)
T PLN00113 359 TVLDLSTNNLTGEIPE---GLCSSGNLFKLILFSNS-LEGEIP-KSLGACRSLRRVRLQDNSFSGELPS---------EF 424 (968)
T ss_pred cEEECCCCeeEeeCCh---hHhCcCCCCEEECcCCE-ecccCC-HHHhCCCCCCEEECcCCEeeeECCh---------hH
Confidence 8888877642111110 01234667777777643 332223 2345577777777777654333332 23
Q ss_pred cccCccCEEeeccCCCcccccCCCCCcccccccceeeeccCCccccccccccccceeeceeecccccceeEEEeccCCCC
Q 005708 427 ELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVQDCDELRQVFPTNLGKKAAVEEMVPYRKRRDHIHIHATTSTS 506 (681)
Q Consensus 427 ~~~~~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~ 506 (681)
..+++|+.|.++++.-...++.. +..+++|+.|++++|.-.... |..+ ...+|+.|++++|++... + +..
T Consensus 425 ~~l~~L~~L~Ls~N~l~~~~~~~---~~~l~~L~~L~L~~n~~~~~~-p~~~-~~~~L~~L~ls~n~l~~~-~--~~~-- 494 (968)
T PLN00113 425 TKLPLVYFLDISNNNLQGRINSR---KWDMPSLQMLSLARNKFFGGL-PDSF-GSKRLENLDLSRNQFSGA-V--PRK-- 494 (968)
T ss_pred hcCCCCCEEECcCCcccCccChh---hccCCCCcEEECcCceeeeec-Cccc-ccccceEEECcCCccCCc-c--Chh--
Confidence 45666666776665432222211 234566666666666543333 3332 235566666666655432 1 111
Q ss_pred CCCCCCCCccEEEEecCCCcceecchhhHhhhccccEeEEcccccccceeccccccccccCCCCcceeccccceeecccC
Q 005708 507 SPTPSLGNLVSITIRGCGQLRQLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDDGGVGLQGASTEKITFPSLFIIQLCHL 586 (681)
Q Consensus 507 ~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c 586 (681)
+..+++|+.|++++|.....++. .+.++++|++|++++|.-...+ |.....+++|++|++++|
T Consensus 495 --~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~-------------p~~~~~l~~L~~L~Ls~N 557 (968)
T PLN00113 495 --LGSLSELMQLKLSENKLSGEIPD--ELSSCKKLVSLDLSHNQLSGQI-------------PASFSEMPVLSQLDLSQN 557 (968)
T ss_pred --hhhhhccCEEECcCCcceeeCCh--HHcCccCCCEEECCCCcccccC-------------ChhHhCcccCCEEECCCC
Confidence 33556666666666643333322 2455666666666666522221 112233566666666666
Q ss_pred CcccccccCCcccccccccccEEEeccCCCceeecC
Q 005708 587 DSLACFFSAGSHATIEFLALAALLIIDCPSMKTFGY 622 (681)
Q Consensus 587 ~~L~~~~~~~~~~~~~~~sL~~L~i~~C~~L~~~~~ 622 (681)
+-...+|. .+. .+++|+.|++.+|+-...+|.
T Consensus 558 ~l~~~~p~-~l~---~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 558 QLSGEIPK-NLG---NVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred cccccCCh-hHh---cCcccCEEeccCCcceeeCCC
Confidence 54444542 222 356666666666665554543
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.8e-35 Score=345.77 Aligned_cols=510 Identities=20% Similarity=0.224 Sum_probs=388.6
Q ss_pred CCCCCCCccEEEccCCCCc-cCCCCC--CCCCCcEEEccCCCCC-CCChHHHhCCCCccEEEecCCCC-CCCCccccCCC
Q 005708 31 SINTFEDLTGISLMFNDIH-EVPDEL--ECPKLQALFLQENSPL-AIPDRFFQGMKDLKVLDLGGIRG-FSLPSSLSFLI 105 (681)
Q Consensus 31 ~~~~l~~lr~L~l~~~~~~-~l~~~~--~~~~Lr~L~l~~~~~~-~l~~~~~~~l~~Lr~L~L~~~~~-~~lp~~i~~l~ 105 (681)
.+..+++|+.|++++|.+. .+|... .+++||+|++++|.+. .+|. +.+++|++|++++|.+ ..+|..+++++
T Consensus 88 ~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~ 164 (968)
T PLN00113 88 AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFS 164 (968)
T ss_pred HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHhcCC
Confidence 4678899999999999986 677654 8899999999999987 4553 5789999999999999 57899999999
Q ss_pred CCcEEEccCCCCCCCCc-ccCCCCCccEEEcccCCCc-ccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEc
Q 005708 106 NLRTLSLHDCRRFGDLP-LIGELSLLEILDLSESDVS-EIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYM 183 (681)
Q Consensus 106 ~L~~L~L~~~~~~~~l~-~l~~L~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l 183 (681)
+|++|++++|.....+| .++++++|++|++++|.+. .+|..++++++|++|++++|...+.+|.. ++++++|++|++
T Consensus 165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L 243 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDL 243 (968)
T ss_pred CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEEC
Confidence 99999999999666777 8999999999999999887 67999999999999999998877788877 899999999999
Q ss_pred ccCcccccccchhhhhhccchhhhcCCCCCcEEEEeCCCCC-CCCCC-CCCCCccEEEEEecCCcCCCchhHHHHHhhh-
Q 005708 184 SHSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKGK-IMPSD-MSFQNLTSFSIKIGDLEEDPLSDFIELFLEK- 260 (681)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~- 260 (681)
++|.. ....+..++.+++|+.|++++|.+. .+|.. ..+++|+.|++.++...... +..
T Consensus 244 ~~n~l-----------~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~--------p~~~ 304 (968)
T PLN00113 244 VYNNL-----------TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI--------PELV 304 (968)
T ss_pred cCcee-----------ccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCC--------ChhH
Confidence 99863 2256778999999999999999874 45544 67889999999887653222 112
Q ss_pred ccccccceeeeccccchhhhHHHHHHHHhccceeecccccCcccccccccccccCCCcEEEEEecCCceEeeeccccccc
Q 005708 261 FNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNDLENMVSDLANDGFNELMFLVIVRCNEMKCLVNSLERTRR 340 (681)
Q Consensus 261 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 340 (681)
...++++.+.+.++.-...+|.++.. +++|+.|++.++.........+.. +++|+.|+++++.-...++. ..
T Consensus 305 ~~l~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~p~~l~~--~~~L~~L~Ls~n~l~~~~p~-----~~ 376 (968)
T PLN00113 305 IQLQNLEILHLFSNNFTGKIPVALTS-LPRLQVLQLWSNKFSGEIPKNLGK--HNNLTVLDLSTNNLTGEIPE-----GL 376 (968)
T ss_pred cCCCCCcEEECCCCccCCcCChhHhc-CCCCCEEECcCCCCcCcCChHHhC--CCCCcEEECCCCeeEeeCCh-----hH
Confidence 25678999999887555555655544 789999999877654343333433 78999999998843323332 45
Q ss_pred cccCccceeeecccccccccccCcCCCCcCCCccEEEEeeCCCCCccccchHHhhcCCCcEEEEeeccCcceeecccccc
Q 005708 341 VTLHKLEWLAIFLNQNLVEICHGQLPAGCLSNVKRLDVGDCGSMLKILPSHLVQSFQNLQRLRVGRCELLESVFEIERVN 420 (681)
Q Consensus 341 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 420 (681)
..+++|+.|.+.++.-...+ ....+.+++|+.|++.+|. ++...+ ..+..+++|+.|+++++.....++.
T Consensus 377 ~~~~~L~~L~l~~n~l~~~~---p~~~~~~~~L~~L~L~~n~-l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~~----- 446 (968)
T PLN00113 377 CSSGNLFKLILFSNSLEGEI---PKSLGACRSLRRVRLQDNS-FSGELP-SEFTKLPLVYFLDISNNNLQGRINS----- 446 (968)
T ss_pred hCcCCCCEEECcCCEecccC---CHHHhCCCCCCEEECcCCE-eeeECC-hhHhcCCCCCEEECcCCcccCccCh-----
Confidence 56789999999988522111 1112467899999999975 333333 3467899999999999765443332
Q ss_pred cccccccccCccCEEeeccCCCcccccCCCCCcccccccceeeeccCCccccccccccccceeeceeecccccceeEEEe
Q 005708 421 IAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVQDCDELRQVFPTNLGKKAAVEEMVPYRKRRDHIHIH 500 (681)
Q Consensus 421 ~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~ 500 (681)
....+++|+.|.+.+|.....++.. ...++|+.|++++|. +....|..+..+.+|+.|++++|++... .
T Consensus 447 ----~~~~l~~L~~L~L~~n~~~~~~p~~----~~~~~L~~L~ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~- 515 (968)
T PLN00113 447 ----RKWDMPSLQMLSLARNKFFGGLPDS----FGSKRLENLDLSRNQ-FSGAVPRKLGSLSELMQLKLSENKLSGE-I- 515 (968)
T ss_pred ----hhccCCCCcEEECcCceeeeecCcc----cccccceEEECcCCc-cCCccChhhhhhhccCEEECcCCcceee-C-
Confidence 2356899999999998766555432 245899999999985 4445588889999999999999977654 2
Q ss_pred ccCCCCCCCCCCCCccEEEEecCCCcceecchhhHhhhccccEeEEcccccccceeccccccccccCCCCcceeccccce
Q 005708 501 ATTSTSSPTPSLGNLVSITIRGCGQLRQLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDDGGVGLQGASTEKITFPSLFI 580 (681)
Q Consensus 501 ~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 580 (681)
|.. +..+++|+.|++++|.-...++. .+..+++|++|++++|.-...+ |..+..+++|++
T Consensus 516 -p~~----~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~-------------p~~l~~l~~L~~ 575 (968)
T PLN00113 516 -PDE----LSSCKKLVSLDLSHNQLSGQIPA--SFSEMPVLSQLDLSQNQLSGEI-------------PKNLGNVESLVQ 575 (968)
T ss_pred -ChH----HcCccCCCEEECCCCcccccCCh--hHhCcccCCEEECCCCcccccC-------------ChhHhcCcccCE
Confidence 222 55789999999999965444432 3788999999999999744333 234555899999
Q ss_pred eecccCCcccccccCCcccccccccccEEEeccCCCc
Q 005708 581 IQLCHLDSLACFFSAGSHATIEFLALAALLIIDCPSM 617 (681)
Q Consensus 581 L~l~~c~~L~~~~~~~~~~~~~~~sL~~L~i~~C~~L 617 (681)
|++++|+-...+|..+. +.++....+.|.|.+
T Consensus 576 l~ls~N~l~~~~p~~~~-----~~~~~~~~~~~n~~l 607 (968)
T PLN00113 576 VNISHNHLHGSLPSTGA-----FLAINASAVAGNIDL 607 (968)
T ss_pred EeccCCcceeeCCCcch-----hcccChhhhcCCccc
Confidence 99999988778885543 345555566666555
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.96 E-value=1.4e-28 Score=288.78 Aligned_cols=352 Identities=20% Similarity=0.293 Sum_probs=215.0
Q ss_pred CChHHHhCCCCccEEEecCCCC-------CCCCccccCCC-CCcEEEccCCCCCCCCcccCCCCCccEEEcccCCCcccc
Q 005708 73 IPDRFFQGMKDLKVLDLGGIRG-------FSLPSSLSFLI-NLRTLSLHDCRRFGDLPLIGELSLLEILDLSESDVSEIP 144 (681)
Q Consensus 73 l~~~~~~~l~~Lr~L~L~~~~~-------~~lp~~i~~l~-~L~~L~L~~~~~~~~l~~l~~L~~L~~L~l~~~~i~~lp 144 (681)
+....|.++++|++|.+.++.. ..+|..+..++ +|+.|++.+++ ++.+|.-..+.+|+.|++.++.+..+|
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~f~~~~L~~L~L~~s~l~~L~ 627 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCMPSNFRPENLVKLQMQGSKLEKLW 627 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCCCCCcCCccCCcEEECcCccccccc
Confidence 4455577888888888766532 23566665553 58888888877 777774336778888888888888888
Q ss_pred hhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcccccccchhhhhhccchhhhcCCCCCcEEEEeCCC-C
Q 005708 145 VSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPK-G 223 (681)
Q Consensus 145 ~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~ 223 (681)
.++..+++|++|++++|..+..+|. ++.+++|++|++++|.. ....+..++.+++|+.|+++++. +
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~-----------L~~lp~si~~L~~L~~L~L~~c~~L 694 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSS-----------LVELPSSIQYLNKLEDLDMSRCENL 694 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCC-----------ccccchhhhccCCCCEEeCCCCCCc
Confidence 8888888888888888777777775 67888888888877742 33556677778888888877653 3
Q ss_pred CCCCCCCCCCCccEEEEEecCCcCCCchhHHHHHhhhccccccceeeeccccchhhhHHHHHHHHhccceeecccccCcc
Q 005708 224 KIMPSDMSFQNLTSFSIKIGDLEEDPLSDFIELFLEKFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNDLE 303 (681)
Q Consensus 224 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 303 (681)
..+|....+++|+.|++.+| ..+.
T Consensus 695 ~~Lp~~i~l~sL~~L~Lsgc--------------------------------------------------------~~L~ 718 (1153)
T PLN03210 695 EILPTGINLKSLYRLNLSGC--------------------------------------------------------SRLK 718 (1153)
T ss_pred CccCCcCCCCCCCEEeCCCC--------------------------------------------------------CCcc
Confidence 44444333444444443332 2111
Q ss_pred cccccccccccCCCcEEEEEecCCceEeeeccccccccccCccceeeecccccccccccCcCCCCcCCCccEEEEeeCCC
Q 005708 304 NMVSDLANDGFNELMFLVIVRCNEMKCLVNSLERTRRVTLHKLEWLAIFLNQNLVEICHGQLPAGCLSNVKRLDVGDCGS 383 (681)
Q Consensus 304 ~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~ 383 (681)
.. +. ..++|++|++.++ .++.++. ...+++|++|.+.++.... ++..
T Consensus 719 ~~-p~----~~~nL~~L~L~~n-~i~~lP~------~~~l~~L~~L~l~~~~~~~-l~~~-------------------- 765 (1153)
T PLN03210 719 SF-PD----ISTNISWLDLDET-AIEEFPS------NLRLENLDELILCEMKSEK-LWER-------------------- 765 (1153)
T ss_pred cc-cc----ccCCcCeeecCCC-ccccccc------cccccccccccccccchhh-cccc--------------------
Confidence 11 11 1346677777666 3444443 1245667777666543211 1100
Q ss_pred CCccccchHHhhcCCCcEEEEeeccCcceeecccccccccccccccCccCEEeeccCCCcccccCCCCCcccccccceee
Q 005708 384 MLKILPSHLVQSFQNLQRLRVGRCELLESVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVR 463 (681)
Q Consensus 384 l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~ 463 (681)
+..+.+ .....+++|+.|++++|+.+.++|. .+..+++|+.|.+.+|++++.+|... ++++|+.|+
T Consensus 766 ~~~l~~-~~~~~~~sL~~L~Ls~n~~l~~lP~---------si~~L~~L~~L~Ls~C~~L~~LP~~~----~L~sL~~L~ 831 (1153)
T PLN03210 766 VQPLTP-LMTMLSPSLTRLFLSDIPSLVELPS---------SIQNLHKLEHLEIENCINLETLPTGI----NLESLESLD 831 (1153)
T ss_pred ccccch-hhhhccccchheeCCCCCCccccCh---------hhhCCCCCCEEECCCCCCcCeeCCCC----CccccCEEE
Confidence 000000 0111245666666666665555544 24456666666666666666655432 456667777
Q ss_pred eccCCccccccccccccceeeceeecccccceeEEEeccCCCCCCCCCCCCccEEEEecCCCcceecchhhHhhhccccE
Q 005708 464 VQDCDELRQVFPTNLGKKAAVEEMVPYRKRRDHIHIHATTSTSSPTPSLGNLVSITIRGCGQLRQLFTTSMVKSLVRLES 543 (681)
Q Consensus 464 i~~c~~l~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~ 543 (681)
+++|..+..+ |. ...+|+.|++++++++.+ |.+ +..+++|+.|++++|++++.++.. ...+++|+.
T Consensus 832 Ls~c~~L~~~-p~---~~~nL~~L~Ls~n~i~~i----P~s----i~~l~~L~~L~L~~C~~L~~l~~~--~~~L~~L~~ 897 (1153)
T PLN03210 832 LSGCSRLRTF-PD---ISTNISDLNLSRTGIEEV----PWW----IEKFSNLSFLDMNGCNNLQRVSLN--ISKLKHLET 897 (1153)
T ss_pred CCCCCccccc-cc---cccccCEeECCCCCCccC----hHH----HhcCCCCCEEECCCCCCcCccCcc--cccccCCCe
Confidence 7777666554 32 234577777777766665 443 456777777777777777776543 456777777
Q ss_pred eEEcccccccce
Q 005708 544 LEVSSCPTLQEI 555 (681)
Q Consensus 544 L~i~~C~~L~~~ 555 (681)
+++++|++|+.+
T Consensus 898 L~l~~C~~L~~~ 909 (1153)
T PLN03210 898 VDFSDCGALTEA 909 (1153)
T ss_pred eecCCCcccccc
Confidence 777777777654
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=2.8e-24 Score=252.62 Aligned_cols=378 Identities=21% Similarity=0.305 Sum_probs=270.0
Q ss_pred CcchHHHHHHHHhcccc-------eEEEeCC---------c-------------ccCC----CCCCCCCCccEEEccCCC
Q 005708 1 MHDVVRYVAQQIASKNK-------FMIKAGV---------E-------------LKDW----PSINTFEDLTGISLMFND 47 (681)
Q Consensus 1 mHdl~~dla~~v~~~e~-------~~~~~~~---------~-------------~~~~----~~~~~l~~lr~L~l~~~~ 47 (681)
|||++||||+.++.++. +++...+ + ..++ ..+.+|.+|+.|.+..+.
T Consensus 490 MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~ 569 (1153)
T PLN03210 490 MHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKK 569 (1153)
T ss_pred hhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEeccc
Confidence 99999999999987652 3332210 0 0011 137788999999987654
Q ss_pred Cc-------cCCCCC-CC-CCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEEEccCCCCC
Q 005708 48 IH-------EVPDEL-EC-PKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLRTLSLHDCRRF 118 (681)
Q Consensus 48 ~~-------~l~~~~-~~-~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~~ 118 (681)
.. .+|... .+ ++||.|.+.++.+..+|..+ ...+|+.|++.++++..+|..+..+++|++|+++++..+
T Consensus 570 ~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l 647 (1153)
T PLN03210 570 WDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF--RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNL 647 (1153)
T ss_pred ccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC--CccCCcEEECcCccccccccccccCCCCCEEECCCCCCc
Confidence 21 345544 33 57999999999999999864 679999999999999999999999999999999998888
Q ss_pred CCCcccCCCCCccEEEcccC-CCcccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcccccccchhh
Q 005708 119 GDLPLIGELSLLEILDLSES-DVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHWQFESEED 197 (681)
Q Consensus 119 ~~l~~l~~L~~L~~L~l~~~-~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 197 (681)
+.+|.++.+++|++|++++| .+..+|..++++++|++|++++|..++.+|.. .++++|+.|++++|...
T Consensus 648 ~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~--i~l~sL~~L~Lsgc~~L-------- 717 (1153)
T PLN03210 648 KEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG--INLKSLYRLNLSGCSRL-------- 717 (1153)
T ss_pred CcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc--CCCCCCCEEeCCCCCCc--------
Confidence 99999999999999999997 56799999999999999999999999999985 38999999999988531
Q ss_pred hhhccchhhhcCCCCCcEEEEeCCCCCCCCCCCCCCCccEEEEEecCCcCCCchhHHHHHhhhccccccceeeeccccch
Q 005708 198 ARSNAKFIELGALSRLTSLHIDIPKGKIMPSDMSFQNLTSFSIKIGDLEEDPLSDFIELFLEKFNKRCSRAMGLSQDMRI 277 (681)
Q Consensus 198 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~ 277 (681)
...+. ..++|+.|++.++.+..+|....+++|+.|.+..+....... .+
T Consensus 718 ---~~~p~---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~-------------------------~~ 766 (1153)
T PLN03210 718 ---KSFPD---ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWE-------------------------RV 766 (1153)
T ss_pred ---ccccc---ccCCcCeeecCCCccccccccccccccccccccccchhhccc-------------------------cc
Confidence 11221 246889999999998888887777888887765533211100 00
Q ss_pred hhhHHHHHHHHhccceeecccccCcccccccccccccCCCcEEEEEecCCceEeeeccccccccccCccceeeecccccc
Q 005708 278 SALHSWIKNLLLRSEILALAEVNDLENMVSDLANDGFNELMFLVIVRCNEMKCLVNSLERTRRVTLHKLEWLAIFLNQNL 357 (681)
Q Consensus 278 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l 357 (681)
..++......+++|+.|++.++.........+. .+++|+.|++.+|..++.+|.. ..+++|+.|++++|..+
T Consensus 767 ~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~--~L~~L~~L~Ls~C~~L~~LP~~------~~L~sL~~L~Ls~c~~L 838 (1153)
T PLN03210 767 QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ--NLHKLEHLEIENCINLETLPTG------INLESLESLDLSGCSRL 838 (1153)
T ss_pred cccchhhhhccccchheeCCCCCCccccChhhh--CCCCCCEEECCCCCCcCeeCCC------CCccccCEEECCCCCcc
Confidence 001111122245677777776665555444333 3778888888888777776642 25677888888887766
Q ss_pred cccccCcCCCCcCCCccEEEEeeCCCCCccccchHHhhcCCCcEEEEeeccCcceeecccccccccccccccCccCEEee
Q 005708 358 VEICHGQLPAGCLSNVKRLDVGDCGSMLKILPSHLVQSFQNLQRLRVGRCELLESVFEIERVNIAKEETELFSSLEKLTL 437 (681)
Q Consensus 358 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 437 (681)
..++. ..++|+.|++.+ +.++.++. .+..+++|+.|++++|+.++.++. ....+++|+.+.+
T Consensus 839 ~~~p~------~~~nL~~L~Ls~-n~i~~iP~--si~~l~~L~~L~L~~C~~L~~l~~---------~~~~L~~L~~L~l 900 (1153)
T PLN03210 839 RTFPD------ISTNISDLNLSR-TGIEEVPW--WIEKFSNLSFLDMNGCNNLQRVSL---------NISKLKHLETVDF 900 (1153)
T ss_pred ccccc------cccccCEeECCC-CCCccChH--HHhcCCCCCEEECCCCCCcCccCc---------ccccccCCCeeec
Confidence 55421 235777787777 45655532 356678888888888887777654 2345677777788
Q ss_pred ccCCCccccc
Q 005708 438 IDLPRMTDIW 447 (681)
Q Consensus 438 ~~~~~L~~~~ 447 (681)
.+|++|..++
T Consensus 901 ~~C~~L~~~~ 910 (1153)
T PLN03210 901 SDCGALTEAS 910 (1153)
T ss_pred CCCccccccc
Confidence 8887776543
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=1.2e-25 Score=224.53 Aligned_cols=385 Identities=19% Similarity=0.195 Sum_probs=262.8
Q ss_pred ccEEEccCCCCccCCCC----CCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEEEcc
Q 005708 38 LTGISLMFNDIHEVPDE----LECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLRTLSLH 113 (681)
Q Consensus 38 lr~L~l~~~~~~~l~~~----~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~ 113 (681)
-+.|+.+++.+..+... .-.+..++|++++|.+.++...+|.++++|+.+++.+|.+..+|...+...+|+.|+|.
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~ 133 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLR 133 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeee
Confidence 46688888888765221 24467788999999999988888999999999999999999999887788889999999
Q ss_pred CCCCCCCCc--ccCCCCCccEEEcccCCCcccch-hhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcccc
Q 005708 114 DCRRFGDLP--LIGELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHW 190 (681)
Q Consensus 114 ~~~~~~~l~--~l~~L~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 190 (681)
+|. +..+. .+..++.||.||++.|.|+.+|. .|..-.++++|+|++| .++.+..+.|.++.+|..|.++.|.+
T Consensus 134 ~N~-I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNri-- 209 (873)
T KOG4194|consen 134 HNL-ISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNRI-- 209 (873)
T ss_pred ccc-cccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccc-cccccccccccccchheeeecccCcc--
Confidence 988 77775 78899999999999999998875 4666678999999994 45666655588888999999988864
Q ss_pred cccchhhhhhccchhhhcCCCCCcEEEEeCCCCCCCCCC--CCCCCccEEEEEecCCcCCCchhHHHHHhhhccccccce
Q 005708 191 QFESEEDARSNAKFIELGALSRLTSLHIDIPKGKIMPSD--MSFQNLTSFSIKIGDLEEDPLSDFIELFLEKFNKRCSRA 268 (681)
Q Consensus 191 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 268 (681)
..--+..+..+++|+.|++..|.+...... ..+++|+.|.+..++...+..
T Consensus 210 ---------ttLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~D------------------ 262 (873)
T KOG4194|consen 210 ---------TTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDD------------------ 262 (873)
T ss_pred ---------cccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccC------------------
Confidence 223456678899999999998887654333 667777777777665544332
Q ss_pred eeeccccchhhhHHHHHHHHhccceeecccccCcccccccccccccCCCcEEEEEecCCceEeeeccccccccccCccce
Q 005708 269 MGLSQDMRISALHSWIKNLLLRSEILALAEVNDLENMVSDLANDGFNELMFLVIVRCNEMKCLVNSLERTRRVTLHKLEW 348 (681)
Q Consensus 269 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~ 348 (681)
+.+..+..+++|+++.+.-..-...++. ++..|+.|+++.+ .++.+... .....++|++
T Consensus 263 --------------G~Fy~l~kme~l~L~~N~l~~vn~g~lf--gLt~L~~L~lS~N-aI~rih~d----~WsftqkL~~ 321 (873)
T KOG4194|consen 263 --------------GAFYGLEKMEHLNLETNRLQAVNEGWLF--GLTSLEQLDLSYN-AIQRIHID----SWSFTQKLKE 321 (873)
T ss_pred --------------cceeeecccceeecccchhhhhhccccc--ccchhhhhccchh-hhheeecc----hhhhccccee
Confidence 4444456667777744432221112222 2677777787777 55555433 4556677777
Q ss_pred eeecccccccccccCcCCCCcCCCccEEEEeeCCCCCccccchHHhhcCCCcEEEEeeccCcceeecccccccccccccc
Q 005708 349 LAIFLNQNLVEICHGQLPAGCLSNVKRLDVGDCGSMLKILPSHLVQSFQNLQRLRVGRCELLESVFEIERVNIAKEETEL 428 (681)
Q Consensus 349 L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~ 428 (681)
|+++.+ .++++..+.+ ..+..|++|.+++ +.+..+ ....+..+++|++|+++++.. . |.. +.+...+..
T Consensus 322 LdLs~N-~i~~l~~~sf--~~L~~Le~LnLs~-Nsi~~l-~e~af~~lssL~~LdLr~N~l-s-~~I----EDaa~~f~g 390 (873)
T KOG4194|consen 322 LDLSSN-RITRLDEGSF--RVLSQLEELNLSH-NSIDHL-AEGAFVGLSSLHKLDLRSNEL-S-WCI----EDAAVAFNG 390 (873)
T ss_pred Eecccc-ccccCChhHH--HHHHHhhhhcccc-cchHHH-HhhHHHHhhhhhhhcCcCCeE-E-EEE----ecchhhhcc
Confidence 777765 3444322221 2456677777777 556655 334456678888888877432 1 111 112234566
Q ss_pred cCccCEEeeccCCCcccccCCCCCcccccccceeeeccCCccccccccccccceeeceeecc
Q 005708 429 FSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVQDCDELRQVFPTNLGKKAAVEEMVPY 490 (681)
Q Consensus 429 ~~~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~l~~~~~L~~L~l~ 490 (681)
+++|++|.+.+ .+++.++... |..+++|+.|++.+.+ +.++-|++|..+ .|++|.+.
T Consensus 391 l~~LrkL~l~g-Nqlk~I~krA--fsgl~~LE~LdL~~Na-iaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 391 LPSLRKLRLTG-NQLKSIPKRA--FSGLEALEHLDLGDNA-IASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred chhhhheeecC-ceeeecchhh--hccCcccceecCCCCc-ceeecccccccc-hhhhhhhc
Confidence 78888888877 4566666543 3467777777776643 444445666655 66666554
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=2.9e-27 Score=225.98 Aligned_cols=462 Identities=20% Similarity=0.281 Sum_probs=278.9
Q ss_pred CccEEEccCCCCccCCCCC-CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEEEccCC
Q 005708 37 DLTGISLMFNDIHEVPDEL-ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLRTLSLHDC 115 (681)
Q Consensus 37 ~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~ 115 (681)
.+..+.++.|.+..+.... .+..|.+|.+++|....+|+.+ +++..++.|+.++|++.++|..++.+..|+.|+++.|
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n 124 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN 124 (565)
T ss_pred chhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc
Confidence 3566777788877666555 7778888888888888888774 7788888888888888888888888888888888888
Q ss_pred CCCCCCc-ccCCCCCccEEEcccCCCcccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcccccccc
Q 005708 116 RRFGDLP-LIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHWQFES 194 (681)
Q Consensus 116 ~~~~~l~-~l~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 194 (681)
. +..+| .++.+..|+.|+..+|+++.+|.+++++.+|..+++.+ +.+..+|++.+. ++.|++|+...|
T Consensus 125 ~-~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~-n~l~~l~~~~i~-m~~L~~ld~~~N-------- 193 (565)
T KOG0472|consen 125 E-LKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEG-NKLKALPENHIA-MKRLKHLDCNSN-------- 193 (565)
T ss_pred c-eeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccc-cchhhCCHHHHH-HHHHHhcccchh--------
Confidence 7 55554 78888888888888888888888888888888888877 455667766444 777888877665
Q ss_pred hhhhhhccchhhhcCCCCCcEEEEeCCCCCCCCCCCCCCCccEEEEEecCCcCCCchhHHHHHhhhc-cccccceeeecc
Q 005708 195 EEDARSNAKFIELGALSRLTSLHIDIPKGKIMPSDMSFQNLTSFSIKIGDLEEDPLSDFIELFLEKF-NKRCSRAMGLSQ 273 (681)
Q Consensus 195 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~~~l~~l~l~~ 273 (681)
.....|.+++.+.+|..|++..|++..+|.-.++..|+++.+..+.....+. +.+ ..+++..+++.+
T Consensus 194 ----~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpa--------e~~~~L~~l~vLDLRd 261 (565)
T KOG0472|consen 194 ----LLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPA--------EHLKHLNSLLVLDLRD 261 (565)
T ss_pred ----hhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHH--------HHhcccccceeeeccc
Confidence 2346777777777777777777777777765666777777665544322221 111 445555666655
Q ss_pred ccchhhhHHHHHHHHhccceeecccccCcccccccccccccCCCcEEEEEecCCceEeeeccccccccccCccceeee-c
Q 005708 274 DMRISALHSWIKNLLLRSEILALAEVNDLENMVSDLANDGFNELMFLVIVRCNEMKCLVNSLERTRRVTLHKLEWLAI-F 352 (681)
Q Consensus 274 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l-~ 352 (681)
+ .+..+|+++.- +++|+.|+++++. ++...+.++. + +|+.|.+.|+|- ..+..+ ....+.-.-|++|.= .
T Consensus 262 N-klke~Pde~cl-LrsL~rLDlSNN~-is~Lp~sLgn--l-hL~~L~leGNPl-rTiRr~--ii~~gT~~vLKyLrs~~ 332 (565)
T KOG0472|consen 262 N-KLKEVPDEICL-LRSLERLDLSNND-ISSLPYSLGN--L-HLKFLALEGNPL-RTIRRE--IISKGTQEVLKYLRSKI 332 (565)
T ss_pred c-ccccCchHHHH-hhhhhhhcccCCc-cccCCccccc--c-eeeehhhcCCch-HHHHHH--HHcccHHHHHHHHHHhh
Confidence 4 33446666543 5778888886554 3344444444 4 777777777742 111100 001111111222211 0
Q ss_pred cccccccc----------ccCcCCC-CcCCCccEEEEeeCCCCCccccchHHhhc--CCCcEEEEeeccCcceeecccc-
Q 005708 353 LNQNLVEI----------CHGQLPA-GCLSNVKRLDVGDCGSMLKILPSHLVQSF--QNLQRLRVGRCELLESVFEIER- 418 (681)
Q Consensus 353 ~~~~l~~~----------~~~~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~l--~~L~~L~l~~c~~l~~~~~~~~- 418 (681)
.+.++..- ....+|. -...+.|.|.+++ .+++.++. ..+..- .-....+++. ..+.++|..-.
T Consensus 333 ~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPd-EVfea~~~~~Vt~Vnfsk-NqL~elPk~L~~ 409 (565)
T KOG0472|consen 333 KDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPD-EVFEAAKSEIVTSVNFSK-NQLCELPKRLVE 409 (565)
T ss_pred ccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-cccccCCH-HHHHHhhhcceEEEeccc-chHhhhhhhhHH
Confidence 00000000 0001111 1344567777777 56666643 332211 1234555555 33444443110
Q ss_pred --------------cccccccccccCccCEEeeccCCCcccccCCCCCcccccccceeeeccCCccccccccccccceee
Q 005708 419 --------------VNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVQDCDELRQVFPTNLGKKAAV 484 (681)
Q Consensus 419 --------------~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~l~~~~~L 484 (681)
.+.....+..+++|..|.+++.+ +.++|.. +..+-.|+.|+|+.. +++.. |..+..+..+
T Consensus 410 lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~-Ln~LP~e---~~~lv~Lq~LnlS~N-rFr~l-P~~~y~lq~l 483 (565)
T KOG0472|consen 410 LKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL-LNDLPEE---MGSLVRLQTLNLSFN-RFRML-PECLYELQTL 483 (565)
T ss_pred HHHHHHHHHhhcCccccchHHHHhhhcceeeecccch-hhhcchh---hhhhhhhheeccccc-ccccc-hHHHhhHHHH
Confidence 01112244567777777777633 4555544 234556777777764 44444 5566666666
Q ss_pred ceeecccccceeEEEeccCCCCCCCCCCCCccEEEEecCCCcceecchhhHhhhccccEeEEcccc
Q 005708 485 EEMVPYRKRRDHIHIHATTSTSSPTPSLGNLVSITIRGCGQLRQLFTTSMVKSLVRLESLEVSSCP 550 (681)
Q Consensus 485 ~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~ 550 (681)
+.+-.+++++.++ +.+ ++.++.+|..|++.++ .+..+|+. ++++++|++|++++.|
T Consensus 484 Etllas~nqi~~v----d~~---~l~nm~nL~tLDL~nN-dlq~IPp~--LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 484 ETLLASNNQIGSV----DPS---GLKNMRNLTTLDLQNN-DLQQIPPI--LGNMTNLRHLELDGNP 539 (565)
T ss_pred HHHHhcccccccc----ChH---HhhhhhhcceeccCCC-chhhCChh--hccccceeEEEecCCc
Confidence 6666666777666 332 3557777788888654 56666655 7788888888887776
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=5.2e-27 Score=224.24 Aligned_cols=483 Identities=20% Similarity=0.200 Sum_probs=312.8
Q ss_pred CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEEEccCCCCCCCCc-ccCCCCCccEEE
Q 005708 56 ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILD 134 (681)
Q Consensus 56 ~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~-~l~~L~~L~~L~ 134 (681)
.-..+..|++++|.+..+-+++ .++..|.+|++.+|+...+|++++.+..++.|+.++|+ +..+| .++.+.+|+.|+
T Consensus 43 ~qv~l~~lils~N~l~~l~~dl-~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 43 EQVDLQKLILSHNDLEVLREDL-KNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNK-LSELPEQIGSLISLVKLD 120 (565)
T ss_pred hhcchhhhhhccCchhhccHhh-hcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccch-HhhccHHHhhhhhhhhhh
Confidence 4467888999999999888774 89999999999999999999999999999999999999 88888 999999999999
Q ss_pred cccCCCcccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcccccccchhhhhhccchhhhcCCCCCc
Q 005708 135 LSESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHWQFESEEDARSNAKFIELGALSRLT 214 (681)
Q Consensus 135 l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 214 (681)
.+.+.+..+|.+++.+..|..++..+ +.+..+|.+ +.++.+|..|++.+|. ..+.+++.-.++.|+
T Consensus 121 ~s~n~~~el~~~i~~~~~l~dl~~~~-N~i~slp~~-~~~~~~l~~l~~~~n~------------l~~l~~~~i~m~~L~ 186 (565)
T KOG0472|consen 121 CSSNELKELPDSIGRLLDLEDLDATN-NQISSLPED-MVNLSKLSKLDLEGNK------------LKALPENHIAMKRLK 186 (565)
T ss_pred ccccceeecCchHHHHhhhhhhhccc-cccccCchH-HHHHHHHHHhhccccc------------hhhCCHHHHHHHHHH
Confidence 99999999999999999999999988 556788887 8999999999998884 345666666699999
Q ss_pred EEEEeCCCCCCCCCC-CCCCCccEEEEEecCCcCCCchhHHHHHhhhccccccceeeeccccchhhhHHHHHHHHhccce
Q 005708 215 SLHIDIPKGKIMPSD-MSFQNLTSFSIKIGDLEEDPLSDFIELFLEKFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEI 293 (681)
Q Consensus 215 ~L~l~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~ 293 (681)
+|+...|-...+|++ ..+.+|..|++..++....|. ...+..++++.+..+ .++.+|..+...++++..
T Consensus 187 ~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPe---------f~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~v 256 (565)
T KOG0472|consen 187 HLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPE---------FPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLV 256 (565)
T ss_pred hcccchhhhhcCChhhcchhhhHHHHhhhcccccCCC---------CCccHHHHHHHhccc-HHHhhHHHHhccccccee
Confidence 999999999999988 888999999988887766553 334555566655543 444456566555666667
Q ss_pred eecccccCcccccccccccccCCCcEEEEEecCCceEeeeccccccccccCccceeeecccccccccccCcCCCCcCCCc
Q 005708 294 LALAEVNDLENMVSDLANDGFNELMFLVIVRCNEMKCLVNSLERTRRVTLHKLEWLAIFLNQNLVEICHGQLPAGCLSNV 373 (681)
Q Consensus 294 L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L 373 (681)
|++.++ .+......+.. +.+|++|+++++ .+..++. ..+.+ .|+.|.+.|+| ++.+-...+..+.-.-|
T Consensus 257 LDLRdN-klke~Pde~cl--LrsL~rLDlSNN-~is~Lp~-----sLgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vL 325 (565)
T KOG0472|consen 257 LDLRDN-KLKEVPDEICL--LRSLERLDLSNN-DISSLPY-----SLGNL-HLKFLALEGNP-LRTIRREIISKGTQEVL 325 (565)
T ss_pred eecccc-ccccCchHHHH--hhhhhhhcccCC-ccccCCc-----ccccc-eeeehhhcCCc-hHHHHHHHHcccHHHHH
Confidence 776433 23333232222 566777777766 4444443 44555 66667776665 22111101111100001
Q ss_pred cEEEE-eeCCCCCcc------------ccchHHhhcCCCcEEEEeeccCcceeecccccccccccccccCccCEEeeccC
Q 005708 374 KRLDV-GDCGSMLKI------------LPSHLVQSFQNLQRLRVGRCELLESVFEIERVNIAKEETELFSSLEKLTLIDL 440 (681)
Q Consensus 374 ~~L~l-~~c~~l~~~------------~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 440 (681)
++|.= .-|..+..- .++.-.....+.+.|++++ ..++.+|.. .++++.. .-.....++.
T Consensus 326 KyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdE-Vfea~~~-----~~Vt~Vnfsk- 397 (565)
T KOG0472|consen 326 KYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPDE-VFEAAKS-----EIVTSVNFSK- 397 (565)
T ss_pred HHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-cccccCCHH-HHHHhhh-----cceEEEeccc-
Confidence 11100 000111000 0111123456778888887 556666552 1111100 0122333443
Q ss_pred CCcccccCCCCCcccccccceeeeccCCccccccccccccceeeceeecccccceeEEEeccCCCCCCCCCCCCccEEEE
Q 005708 441 PRMTDIWKGDTQFVSLHNLKKVRVQDCDELRQVFPTNLGKKAAVEEMVPYRKRRDHIHIHATTSTSSPTPSLGNLVSITI 520 (681)
Q Consensus 441 ~~L~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~i 520 (681)
..+..+|.+ +..+..+.+.-+... +..++.|..+....+|..|++++|-+.++ |.. +..+..|+.|+|
T Consensus 398 NqL~elPk~---L~~lkelvT~l~lsn-n~isfv~~~l~~l~kLt~L~L~NN~Ln~L----P~e----~~~lv~Lq~Lnl 465 (565)
T KOG0472|consen 398 NQLCELPKR---LVELKELVTDLVLSN-NKISFVPLELSQLQKLTFLDLSNNLLNDL----PEE----MGSLVRLQTLNL 465 (565)
T ss_pred chHhhhhhh---hHHHHHHHHHHHhhc-CccccchHHHHhhhcceeeecccchhhhc----chh----hhhhhhhheecc
Confidence 223333332 223344433333333 33344477778888899999999877776 554 556777999999
Q ss_pred ecCCCcceecchhhHhhhccccEeEEcccccccceeccccccccccCCCCcceeccccceeecccCCcccccccCCcccc
Q 005708 521 RGCGQLRQLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDDGGVGLQGASTEKITFPSLFIIQLCHLDSLACFFSAGSHAT 600 (681)
Q Consensus 521 ~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~ 600 (681)
+.+ +...+|.. +..+..||.+-.++ ..+..+.. .++..+.+|.+|++.+ ..|+.+|..-.
T Consensus 466 S~N-rFr~lP~~--~y~lq~lEtllas~-nqi~~vd~------------~~l~nm~nL~tLDL~n-Ndlq~IPp~Lg--- 525 (565)
T KOG0472|consen 466 SFN-RFRMLPEC--LYELQTLETLLASN-NQIGSVDP------------SGLKNMRNLTTLDLQN-NDLQQIPPILG--- 525 (565)
T ss_pred ccc-ccccchHH--HhhHHHHHHHHhcc-ccccccCh------------HHhhhhhhcceeccCC-CchhhCChhhc---
Confidence 877 44444321 23333344333333 23444311 2345588899999987 57888885433
Q ss_pred cccccccEEEeccCCC
Q 005708 601 IEFLALAALLIIDCPS 616 (681)
Q Consensus 601 ~~~~sL~~L~i~~C~~ 616 (681)
++++|++|+++|-|-
T Consensus 526 -nmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 526 -NMTNLRHLELDGNPF 540 (565)
T ss_pred -cccceeEEEecCCcc
Confidence 578999999988764
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=1.5e-23 Score=209.72 Aligned_cols=342 Identities=18% Similarity=0.211 Sum_probs=224.3
Q ss_pred CCccEEEccCCCCccCCCC--CCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCC-CccccCCCCCcEEEc
Q 005708 36 EDLTGISLMFNDIHEVPDE--LECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSL-PSSLSFLINLRTLSL 112 (681)
Q Consensus 36 ~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L 112 (681)
+..+.|++++|++.++... .++++|+.+.+..|.+..+|.. .+...+|+.|+|.+|.|.++ ..++..++.||.|||
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f-~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRF-GHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccc-cccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 3567799999998876544 3889999999999999888873 24556799999999988666 345778888999999
Q ss_pred cCCCCCCCCc--ccCCCCCccEEEcccCCCcccch-hhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCccc
Q 005708 113 HDCRRFGDLP--LIGELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCH 189 (681)
Q Consensus 113 ~~~~~~~~l~--~l~~L~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 189 (681)
+.|. +..+| .+..-.++++|++++|.|+.+-. .|..+.+|-.|.|+. +.+..+|...|.+|++|+.|++..|.+.
T Consensus 157 SrN~-is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 157 SRNL-ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred hhch-hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc-CcccccCHHHhhhcchhhhhhcccccee
Confidence 9888 77776 77777889999999998887743 578888888999988 5567888877888999999998887642
Q ss_pred ccccchhhhhhccchhhhcCCCCCcEEEEeCCCCCCCCCC--CCCCCccEEEEEecCCcCCCchhHHHHHhhhc-ccccc
Q 005708 190 WQFESEEDARSNAKFIELGALSRLTSLHIDIPKGKIMPSD--MSFQNLTSFSIKIGDLEEDPLSDFIELFLEKF-NKRCS 266 (681)
Q Consensus 190 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~~~l 266 (681)
. ...-.+..+++|+.|.+..|.+..+..+ ..+.+++.|++..+....... .++ .+..+
T Consensus 235 i-----------ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~--------g~lfgLt~L 295 (873)
T KOG4194|consen 235 I-----------VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNE--------GWLFGLTSL 295 (873)
T ss_pred e-----------ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhc--------ccccccchh
Confidence 0 1134567788888888888888777666 577788888887766544322 011 34455
Q ss_pred ceeeeccccchhhhHHHHHHHHhccceeecccccCcccccccccccccCCCcEEEEEecCCceEeeeccccccccccCcc
Q 005708 267 RAMGLSQDMRISALHSWIKNLLLRSEILALAEVNDLENMVSDLANDGFNELMFLVIVRCNEMKCLVNSLERTRRVTLHKL 346 (681)
Q Consensus 267 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L 346 (681)
+.|+++.+. ++.+....-..++.|+.|+++.+....-....+ ..+..|++|.++.+ .+..+... .+..+.+|
T Consensus 296 ~~L~lS~Na-I~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf--~~L~~Le~LnLs~N-si~~l~e~----af~~lssL 367 (873)
T KOG4194|consen 296 EQLDLSYNA-IQRIHIDSWSFTQKLKELDLSSNRITRLDEGSF--RVLSQLEELNLSHN-SIDHLAEG----AFVGLSSL 367 (873)
T ss_pred hhhccchhh-hheeecchhhhcccceeEeccccccccCChhHH--HHHHHhhhhccccc-chHHHHhh----HHHHhhhh
Confidence 555555431 111111111224566666664443211111111 12556666666655 33333322 34456677
Q ss_pred ceeeecccccccccccCcCCCCcCCCccEEEEeeCCCCCccccchHHhhcCCCcEEEEeeccC
Q 005708 347 EWLAIFLNQNLVEICHGQLPAGCLSNVKRLDVGDCGSMLKILPSHLVQSFQNLQRLRVGRCEL 409 (681)
Q Consensus 347 ~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 409 (681)
++|+++++.--.-+-++..+...+++|++|.+.+ ++++.+ +...+.++++||+|++.++..
T Consensus 368 ~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I-~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 368 HKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSI-PKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred hhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeec-chhhhccCcccceecCCCCcc
Confidence 7777776531111112333334578888888888 677777 445566788888888887543
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.88 E-value=2.5e-24 Score=226.55 Aligned_cols=417 Identities=21% Similarity=0.232 Sum_probs=229.6
Q ss_pred EEEccCCCCccCCCCC-CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEEEccCCCCC
Q 005708 40 GISLMFNDIHEVPDEL-ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLRTLSLHDCRRF 118 (681)
Q Consensus 40 ~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~~ 118 (681)
+++.+...++.||..+ ....+..|++..|.+...|-.+..+.-+|+.|++++|++..+|..+..+.+|+.|+++.|. +
T Consensus 2 ~vd~s~~~l~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~-i 80 (1081)
T KOG0618|consen 2 HVDASDEQLELIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNY-I 80 (1081)
T ss_pred CcccccccCcccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhh-H
Confidence 3566677777777666 4445888888888887777666677777999999999999999888888999999998887 7
Q ss_pred CCCc-ccCCCCCccEEEcccCCCcccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcccccccchhh
Q 005708 119 GDLP-LIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHWQFESEED 197 (681)
Q Consensus 119 ~~l~-~l~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 197 (681)
...| .++++.+|++|.|.+|.+..+|.++..+++|++|+++.+. ...+|.- +..+..+..+..++|.
T Consensus 81 ~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~-i~~lt~~~~~~~s~N~---------- 148 (1081)
T KOG0618|consen 81 RSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH-FGPIPLV-IEVLTAEEELAASNNE---------- 148 (1081)
T ss_pred hhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhc-cCCCchh-HHhhhHHHHHhhhcch----------
Confidence 7777 8888889999999999888999999999999999998844 4567764 7778888888877762
Q ss_pred hhhccchhhhcCCCCCcEEEEeCCCC-CCCCCC-CCCCCccEEEEEecCCcCCCchhHHHHHhhhccccccceeeecccc
Q 005708 198 ARSNAKFIELGALSRLTSLHIDIPKG-KIMPSD-MSFQNLTSFSIKIGDLEEDPLSDFIELFLEKFNKRCSRAMGLSQDM 275 (681)
Q Consensus 198 ~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~ 275 (681)
....++... ++++++..+.+ ..++.+ ..+.+ .+++..+....
T Consensus 149 -----~~~~lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~---------------------------- 192 (1081)
T KOG0618|consen 149 -----KIQRLGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV---------------------------- 192 (1081)
T ss_pred -----hhhhhcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhhh----------------------------
Confidence 122233332 55555555443 222222 11111 23333322210
Q ss_pred chhhhHHHHHHHHhccceeecccccCcccccccccccccCCCcEEEEEecCCceEeeeccccccccccCccceeeecccc
Q 005708 276 RISALHSWIKNLLLRSEILALAEVNDLENMVSDLANDGFNELMFLVIVRCNEMKCLVNSLERTRRVTLHKLEWLAIFLNQ 355 (681)
Q Consensus 276 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~ 355 (681)
.....+++|+.++..... +... . ..-++|+.|+...|+-.+.. ......+|++++++..
T Consensus 193 -------~dls~~~~l~~l~c~rn~-ls~l----~-~~g~~l~~L~a~~n~l~~~~-------~~p~p~nl~~~dis~n- 251 (1081)
T KOG0618|consen 193 -------LDLSNLANLEVLHCERNQ-LSEL----E-ISGPSLTALYADHNPLTTLD-------VHPVPLNLQYLDISHN- 251 (1081)
T ss_pred -------hhhhhccchhhhhhhhcc-cceE----E-ecCcchheeeeccCcceeec-------cccccccceeeecchh-
Confidence 001112333333331111 0000 0 01245555555555322111 1122233444444433
Q ss_pred cccccccCcCCCCcCCCccEEEEeeCCCCCccccchHHhhcCCCcEEEEeeccCcceeecccccccccccccccCccCEE
Q 005708 356 NLVEICHGQLPAGCLSNVKRLDVGDCGSMLKILPSHLVQSFQNLQRLRVGRCELLESVFEIERVNIAKEETELFSSLEKL 435 (681)
Q Consensus 356 ~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L 435 (681)
+++.++ -..+.+++|+.+.+.+ +.++.++.. .....+|+.|.+..|. ++.++. ....+.+|++|
T Consensus 252 ~l~~lp---~wi~~~~nle~l~~n~-N~l~~lp~r--i~~~~~L~~l~~~~ne-l~yip~---------~le~~~sL~tL 315 (1081)
T KOG0618|consen 252 NLSNLP---EWIGACANLEALNANH-NRLVALPLR--ISRITSLVSLSAAYNE-LEYIPP---------FLEGLKSLRTL 315 (1081)
T ss_pred hhhcch---HHHHhcccceEecccc-hhHHhhHHH--HhhhhhHHHHHhhhhh-hhhCCC---------cccccceeeee
Confidence 122111 0012334444444444 233322111 1123444444443321 222222 23346667777
Q ss_pred eeccCCCcccccCCCCCcccccccceeeeccCCccccccccccccceeeceeecccccceeEEEeccCCCCCCCCCCCCc
Q 005708 436 TLIDLPRMTDIWKGDTQFVSLHNLKKVRVQDCDELRQVFPTNLGKKAAVEEMVPYRKRRDHIHIHATTSTSSPTPSLGNL 515 (681)
Q Consensus 436 ~l~~~~~L~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~L 515 (681)
.++. .++..+|.....+ --.+|+.+.++. .++.....-.=.....|+.|.+.+|.+++- ....+.++.+|
T Consensus 316 dL~~-N~L~~lp~~~l~v-~~~~l~~ln~s~-n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~-------c~p~l~~~~hL 385 (1081)
T KOG0618|consen 316 DLQS-NNLPSLPDNFLAV-LNASLNTLNVSS-NKLSTLPSYEENNHAALQELYLANNHLTDS-------CFPVLVNFKHL 385 (1081)
T ss_pred eehh-ccccccchHHHhh-hhHHHHHHhhhh-ccccccccccchhhHHHHHHHHhcCccccc-------chhhhccccce
Confidence 7766 3344444321110 001133333322 223322110111234588888888866432 22236688899
Q ss_pred cEEEEecCCCcceecchhhHhhhccccEeEEcccccccce
Q 005708 516 VSITIRGCGQLRQLFTTSMVKSLVRLESLEVSSCPTLQEI 555 (681)
Q Consensus 516 ~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~L~~~ 555 (681)
+.|+++++ +|..+ +.+.+.+++.|++|++++.. |+.+
T Consensus 386 KVLhLsyN-rL~~f-pas~~~kle~LeeL~LSGNk-L~~L 422 (1081)
T KOG0618|consen 386 KVLHLSYN-RLNSF-PASKLRKLEELEELNLSGNK-LTTL 422 (1081)
T ss_pred eeeeeccc-ccccC-CHHHHhchHHhHHHhcccch-hhhh
Confidence 99999887 56664 66778899999999998874 6665
No 10
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.88 E-value=3.6e-22 Score=222.48 Aligned_cols=161 Identities=39% Similarity=0.581 Sum_probs=122.0
Q ss_pred CcchHHHHHHHHhc-----ccceEEEeCCcccCCCCCCCCCCccEEEccCCCCccCCCCCCCCCCcEEEccCCC--CCCC
Q 005708 1 MHDVVRYVAQQIAS-----KNKFMIKAGVELKDWPSINTFEDLTGISLMFNDIHEVPDELECPKLQALFLQENS--PLAI 73 (681)
Q Consensus 1 mHdl~~dla~~v~~-----~e~~~~~~~~~~~~~~~~~~l~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~--~~~l 73 (681)
|||+|||+|.++|+ +|.+++..+-+....|.......+|++++.++.+..++....+++|++|-+.+|. +..+
T Consensus 483 mHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~i 562 (889)
T KOG4658|consen 483 MHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEI 562 (889)
T ss_pred eeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhc
Confidence 99999999999999 7777777776677788888999999999999999999998888999999999997 6788
Q ss_pred ChHHHhCCCCccEEEecCCC-CCCCCccccCCCCCcEEEccCCCCCCCCcccCCCCCccEEEcccCCCcccchhhcCCcc
Q 005708 74 PDRFFQGMKDLKVLDLGGIR-GFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSESDVSEIPVSFGRLGH 152 (681)
Q Consensus 74 ~~~~~~~l~~Lr~L~L~~~~-~~~lp~~i~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~l~~~~i~~lp~~i~~l~~ 152 (681)
+..+|..++.||+|||++|. +.++|..|+++.+||||+++++. +..+|.++++|..
T Consensus 563 s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-----------------------I~~LP~~l~~Lk~ 619 (889)
T KOG4658|consen 563 SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-----------------------ISHLPSGLGNLKK 619 (889)
T ss_pred CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-----------------------ccccchHHHHHHh
Confidence 88889999999999999754 36777777777777777766666 4455555555555
Q ss_pred CcEEeccCCCCCCccChhhhcCCCCCcEEEccc
Q 005708 153 LRLLDLTDCVHLELIPRDVLSSLRKLEELYMSH 185 (681)
Q Consensus 153 L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~ 185 (681)
|.+|++..+.....+|. +...+.+|++|.+..
T Consensus 620 L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 620 LIYLNLEVTGRLESIPG-ILLELQSLRVLRLPR 651 (889)
T ss_pred hheeccccccccccccc-hhhhcccccEEEeec
Confidence 55555555443333322 234455555555543
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.87 E-value=8.6e-25 Score=230.04 Aligned_cols=444 Identities=21% Similarity=0.241 Sum_probs=204.3
Q ss_pred ccEEEccCCCCccCCCCC--CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEEEccCC
Q 005708 38 LTGISLMFNDIHEVPDEL--ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLRTLSLHDC 115 (681)
Q Consensus 38 lr~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~ 115 (681)
+.+|++..|.+-..|-.. ..-+|++|++++|.+..+|..+ ..+.+|+.|+++.|.+.+.|.+++++.+|++|.|.+|
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~i-t~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n 101 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQI-TLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN 101 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccccCCchh-hhHHHHhhcccchhhHhhCchhhhhhhcchhheeccc
Confidence 445555555544433111 2333666666666666665553 5566666666666666666666666666666666655
Q ss_pred CCCCCCc-ccCCCCCccEEEcccCCCcccchhhcCCccCcEEeccCCCCCC-------------------ccChhhhcCC
Q 005708 116 RRFGDLP-LIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCVHLE-------------------LIPRDVLSSL 175 (681)
Q Consensus 116 ~~~~~l~-~l~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~-------------------~~~~~~l~~l 175 (681)
. +..+| .+..+++|++|++++|.+..+|..+..+..+..+..++|..+. .++.+ +..+
T Consensus 102 ~-l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~-i~~l 179 (1081)
T KOG0618|consen 102 R-LQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLID-IYNL 179 (1081)
T ss_pred h-hhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcc-hhhh
Confidence 5 55555 5666666666666666666666555555555555555542222 22222 2222
Q ss_pred CCCcEEEcccCcccccccchhhhhhccchhhhcCCCCCcEEEEeCCCCCCCCCCCCCCCccEEEEEecCCcCCCchhHHH
Q 005708 176 RKLEELYMSHSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKGKIMPSDMSFQNLTSFSIKIGDLEEDPLSDFIE 255 (681)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 255 (681)
+. .|++..|.. ....+..+.+|+.+....|++..+. ..-++++.|....+.......
T Consensus 180 ~~--~ldLr~N~~--------------~~~dls~~~~l~~l~c~rn~ls~l~--~~g~~l~~L~a~~n~l~~~~~----- 236 (1081)
T KOG0618|consen 180 TH--QLDLRYNEM--------------EVLDLSNLANLEVLHCERNQLSELE--ISGPSLTALYADHNPLTTLDV----- 236 (1081)
T ss_pred he--eeecccchh--------------hhhhhhhccchhhhhhhhcccceEE--ecCcchheeeeccCcceeecc-----
Confidence 22 244444421 1234455555555555555443221 112445555544443321110
Q ss_pred HHhhhccccccceeeeccccchhhhHHHHHHHHhccceeecccccCcccccccccccccCCCcEEEEEecCCceEeeecc
Q 005708 256 LFLEKFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNDLENMVSDLANDGFNELMFLVIVRCNEMKCLVNSL 335 (681)
Q Consensus 256 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~ 335 (681)
.....+++.+.++.+ .+..+|+|+.. +.+|+.+....+.. ......... ..+|+.|.+..| .++.++.
T Consensus 237 ----~p~p~nl~~~dis~n-~l~~lp~wi~~-~~nle~l~~n~N~l-~~lp~ri~~--~~~L~~l~~~~n-el~yip~-- 304 (1081)
T KOG0618|consen 237 ----HPVPLNLQYLDISHN-NLSNLPEWIGA-CANLEALNANHNRL-VALPLRISR--ITSLVSLSAAYN-ELEYIPP-- 304 (1081)
T ss_pred ----ccccccceeeecchh-hhhcchHHHHh-cccceEecccchhH-HhhHHHHhh--hhhHHHHHhhhh-hhhhCCC--
Confidence 123345555555554 33446766665 56777776643332 221111111 355666666665 4555544
Q ss_pred ccccccccCccceeeecccccccccccCcCCCCcCCCccEEEEeeCCCCCccccchHHhhcCCCcEEEEeeccCcceeec
Q 005708 336 ERTRRVTLHKLEWLAIFLNQNLVEICHGQLPAGCLSNVKRLDVGDCGSMLKILPSHLVQSFQNLQRLRVGRCELLESVFE 415 (681)
Q Consensus 336 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 415 (681)
....+.+|++|++..+ ++..++...+.. ...+|+.|..+. ..+... +......++.|+.|.+.++.--...+
T Consensus 305 ---~le~~~sL~tLdL~~N-~L~~lp~~~l~v-~~~~l~~ln~s~-n~l~~l-p~~~e~~~~~Lq~LylanN~Ltd~c~- 376 (1081)
T KOG0618|consen 305 ---FLEGLKSLRTLDLQSN-NLPSLPDNFLAV-LNASLNTLNVSS-NKLSTL-PSYEENNHAALQELYLANNHLTDSCF- 376 (1081)
T ss_pred ---cccccceeeeeeehhc-cccccchHHHhh-hhHHHHHHhhhh-cccccc-ccccchhhHHHHHHHHhcCcccccch-
Confidence 3444566666666654 232221110000 001122222222 222222 11112234445555544432211111
Q ss_pred ccccccccccccccCccCEEeeccCCCcccccCCCCCcccccccceeeeccCCccccccccccccceeeceeecccccce
Q 005708 416 IERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVQDCDELRQVFPTNLGKKAAVEEMVPYRKRRD 495 (681)
Q Consensus 416 ~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~l~~~~~L~~L~l~~~~l~ 495 (681)
..+..+.+||.|++++ ..|..+|... +.++..|++|.+++ ++|+.+ |..+..+..|+.|...+|++.
T Consensus 377 --------p~l~~~~hLKVLhLsy-NrL~~fpas~--~~kle~LeeL~LSG-NkL~~L-p~tva~~~~L~tL~ahsN~l~ 443 (1081)
T KOG0618|consen 377 --------PVLVNFKHLKVLHLSY-NRLNSFPASK--LRKLEELEELNLSG-NKLTTL-PDTVANLGRLHTLRAHSNQLL 443 (1081)
T ss_pred --------hhhccccceeeeeecc-cccccCCHHH--HhchHHhHHHhccc-chhhhh-hHHHHhhhhhHHHhhcCCcee
Confidence 1234455555555555 2233333322 22445555555555 345554 445555555555555555444
Q ss_pred eEEEeccCCCCCCCCCCCCccEEEEecCCCcceecchhhHhhhccccEeEEccccc
Q 005708 496 HIHIHATTSTSSPTPSLGNLVSITIRGCGQLRQLFTTSMVKSLVRLESLEVSSCPT 551 (681)
Q Consensus 496 ~l~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~ 551 (681)
.+ |. +..++.|+.+|++ |.+|+.+....... -|+|++|++++..+
T Consensus 444 ~f----Pe-----~~~l~qL~~lDlS-~N~L~~~~l~~~~p-~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 444 SF----PE-----LAQLPQLKVLDLS-CNNLSEVTLPEALP-SPNLKYLDLSGNTR 488 (1081)
T ss_pred ec----hh-----hhhcCcceEEecc-cchhhhhhhhhhCC-CcccceeeccCCcc
Confidence 44 31 3355555555553 33444432111011 14555555555554
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=2.6e-24 Score=216.45 Aligned_cols=200 Identities=25% Similarity=0.363 Sum_probs=99.8
Q ss_pred CCCCCCccEEEccCCCCccCCCCC-CCCCCcEEEccCCCCC--CCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCc
Q 005708 32 INTFEDLTGISLMFNDIHEVPDEL-ECPKLQALFLQENSPL--AIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLR 108 (681)
Q Consensus 32 ~~~l~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~--~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~ 108 (681)
+..+.+|.||++..|++..+-..+ .++.||++++..|++. .+|.++| ++..|.+|||++|++.+.|..+..-+++-
T Consensus 51 L~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~i 129 (1255)
T KOG0444|consen 51 LSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSI 129 (1255)
T ss_pred HHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcE
Confidence 344445555555555554444333 5555555555555543 4555544 45555555555555555555555555555
Q ss_pred EEEccCCCCCCCCc--ccCCCCCccEEEcccCCCcccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccC
Q 005708 109 TLSLHDCRRFGDLP--LIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHS 186 (681)
Q Consensus 109 ~L~L~~~~~~~~l~--~l~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 186 (681)
+|+|++|+ +..|| .+-+|+.|-+||+++|++..+|..+.+|.+|++|.|++|+.. ...-..+..++.|+.|.++++
T Consensus 130 VLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~T 207 (1255)
T KOG0444|consen 130 VLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNT 207 (1255)
T ss_pred EEEcccCc-cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccc
Confidence 55555555 55555 445555555555555555555555555555555555554321 111111333444455555443
Q ss_pred cccccccchhhhhhccchhhhcCCCCCcEEEEeCCCCCCCCCC-CCCCCccEEEEEecC
Q 005708 187 FCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKGKIMPSD-MSFQNLTSFSIKIGD 244 (681)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~L~~L~l~~~~ 244 (681)
.- ....+|.++..+.+|+.++++.|.+..+|.. ..+++|+.|+++++.
T Consensus 208 qR----------Tl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 208 QR----------TLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNK 256 (1255)
T ss_pred cc----------hhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCc
Confidence 22 2334455555555555555555555444443 444555555554443
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=1.8e-23 Score=210.34 Aligned_cols=175 Identities=23% Similarity=0.301 Sum_probs=126.2
Q ss_pred CCCCccEEEccCCCCc--cCCCCC-CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEE
Q 005708 34 TFEDLTGISLMFNDIH--EVPDEL-ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLRTL 110 (681)
Q Consensus 34 ~l~~lr~L~l~~~~~~--~l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L 110 (681)
-++-+|-+++++|.++ ..|... .++.++-|.+....+..+|+. ++.+.+|+.|++.+|++.++-..+..++.||.+
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeE-L~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEE-LSRLQKLEHLSMAHNQLISVHGELSDLPRLRSV 83 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHH-HHHHhhhhhhhhhhhhhHhhhhhhccchhhHHH
Confidence 3456677777777775 445555 677777777777777777776 477777777777777777777777777777777
Q ss_pred EccCCCCCC--CCc-ccCCCCCccEEEcccCCCcccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCc
Q 005708 111 SLHDCRRFG--DLP-LIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSF 187 (681)
Q Consensus 111 ~L~~~~~~~--~l~-~l~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 187 (681)
.++.|+ ++ .+| .+.++..|.+||+++|++.+.|..+..-+++-.|+|++ +.+..+|...+.+++.|-.|++++|.
T Consensus 84 ~~R~N~-LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 84 IVRDNN-LKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred hhhccc-cccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhccccch
Confidence 777776 33 345 67777777777777777777777777777777777777 45677777767777777777777774
Q ss_pred ccccccchhhhhhccchhhhcCCCCCcEEEEeCCCC
Q 005708 188 CHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKG 223 (681)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 223 (681)
....|..++.+.+|++|.+++|.+
T Consensus 162 ------------Le~LPPQ~RRL~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 162 ------------LEMLPPQIRRLSMLQTLKLSNNPL 185 (1255)
T ss_pred ------------hhhcCHHHHHHhhhhhhhcCCChh
Confidence 345677777777777777777654
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=3.9e-19 Score=150.89 Aligned_cols=159 Identities=25% Similarity=0.415 Sum_probs=93.5
Q ss_pred cccCCCCCCCCCCccEEEccCCCCccCCCCC-CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccC
Q 005708 25 ELKDWPSINTFEDLTGISLMFNDIHEVPDEL-ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSF 103 (681)
Q Consensus 25 ~~~~~~~~~~l~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~ 103 (681)
.+.++|.+..++.+++|-++.|++..+|+.+ .+.+|++|++++|++.++|.++ +.+++||.|++.-|++..+|..||.
T Consensus 22 sf~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs 100 (264)
T KOG0617|consen 22 SFEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSI-SSLPKLRILNVGMNRLNILPRGFGS 100 (264)
T ss_pred cHhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhh-hhchhhhheecchhhhhcCccccCC
Confidence 3455666666666666767777666666655 6666666666666666666553 5666666666666666666666666
Q ss_pred CCCCcEEEccCCCCCC-CCc-ccCCCCCccEEEcccCCCcccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEE
Q 005708 104 LINLRTLSLHDCRRFG-DLP-LIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEEL 181 (681)
Q Consensus 104 l~~L~~L~L~~~~~~~-~l~-~l~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L 181 (681)
++.|++||+..|.... .+| .|..++.|+.|+++.|.+.-+|.+++++++||.|.++.+. +-.+|.+ ++.++.|++|
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lrel 178 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLREL 178 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHHHH
Confidence 6666666666555222 234 4555555555666666555555556666666666555533 3345554 4555555555
Q ss_pred EcccC
Q 005708 182 YMSHS 186 (681)
Q Consensus 182 ~l~~~ 186 (681)
++.+|
T Consensus 179 hiqgn 183 (264)
T KOG0617|consen 179 HIQGN 183 (264)
T ss_pred hcccc
Confidence 55554
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=5.2e-19 Score=150.16 Aligned_cols=166 Identities=30% Similarity=0.454 Sum_probs=151.5
Q ss_pred CccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEEEccCCCCCCCCc-ccCC
Q 005708 48 IHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLP-LIGE 126 (681)
Q Consensus 48 ~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~-~l~~ 126 (681)
+..++..+.+.++..|.+++|.++.+|+.+ +.+++|++|++.+|+++++|.+++.+++|+.|++.-|+ +..+| .||.
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs 100 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGS 100 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCC
Confidence 446677778899999999999999999985 89999999999999999999999999999999999998 88888 9999
Q ss_pred CCCccEEEcccCCCc--ccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcccccccchhhhhhccch
Q 005708 127 LSLLEILDLSESDVS--EIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHWQFESEEDARSNAKF 204 (681)
Q Consensus 127 L~~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 204 (681)
++.|++||+.+|++. .+|..|-.+..|+.|++++ +....+|++ ++++++||.|.+..|. .-..|
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~d-vg~lt~lqil~lrdnd------------ll~lp 166 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPD-VGKLTNLQILSLRDND------------LLSLP 166 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChh-hhhhcceeEEeeccCc------------hhhCc
Confidence 999999999999887 7899999999999999999 456688888 8999999999998884 34789
Q ss_pred hhhcCCCCCcEEEEeCCCCCCCCCC
Q 005708 205 IELGALSRLTSLHIDIPKGKIMPSD 229 (681)
Q Consensus 205 ~~l~~l~~L~~L~l~~~~~~~~~~~ 229 (681)
.+++.++.|++|++.+|....+|++
T Consensus 167 keig~lt~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 167 KEIGDLTRLRELHIQGNRLTVLPPE 191 (264)
T ss_pred HHHHHHHHHHHHhcccceeeecChh
Confidence 9999999999999999999988876
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.55 E-value=7.6e-14 Score=152.87 Aligned_cols=170 Identities=20% Similarity=0.204 Sum_probs=90.1
Q ss_pred cEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEEEccCCCCC
Q 005708 39 TGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLRTLSLHDCRRF 118 (681)
Q Consensus 39 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~~ 118 (681)
..|+++.+.++.+|..+. ++|+.|.+.+|.++.+|. ..++|++|++++|++..+|.. .++|+.|++++|. +
T Consensus 204 ~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~-L 274 (788)
T PRK15387 204 AVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP-L 274 (788)
T ss_pred cEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCCc-h
Confidence 355666666666655442 356666666666666653 245666666666666666542 2456666666665 5
Q ss_pred CCCcccCCCCCccEEEcccCCCcccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcccccccchhhh
Q 005708 119 GDLPLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHWQFESEEDA 198 (681)
Q Consensus 119 ~~l~~l~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 198 (681)
..+|.+ ..+|+.|++++|+++.+|.. +++|++|++++| .+..+|.. ..+|+.|++++|.+.
T Consensus 275 ~~Lp~l--p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l----p~~L~~L~Ls~N~L~--------- 335 (788)
T PRK15387 275 THLPAL--PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL----PSELCKLWAYNNQLT--------- 335 (788)
T ss_pred hhhhhc--hhhcCEEECcCCcccccccc---ccccceeECCCC-ccccCCCC----cccccccccccCccc---------
Confidence 555521 24566666666666666542 345666666664 33344431 123555555555321
Q ss_pred hhccchhhhcCCCCCcEEEEeCCCCCCCCCCCCCCCccEEEEEecC
Q 005708 199 RSNAKFIELGALSRLTSLHIDIPKGKIMPSDMSFQNLTSFSIKIGD 244 (681)
Q Consensus 199 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~ 244 (681)
.++. -..+|+.|++++|.+..+|.. ..+|+.|.+..+.
T Consensus 336 ---~LP~---lp~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~N~ 373 (788)
T PRK15387 336 ---SLPT---LPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNR 373 (788)
T ss_pred ---cccc---cccccceEecCCCccCCCCCC--Ccccceehhhccc
Confidence 1111 013566666666666655543 2345555544443
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.53 E-value=1.1e-13 Score=151.66 Aligned_cols=156 Identities=21% Similarity=0.156 Sum_probs=101.1
Q ss_pred CCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEEEccCCCCCCCCcccCCCCCccEEEccc
Q 005708 58 PKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSE 137 (681)
Q Consensus 58 ~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~l~~ 137 (681)
..-..|+++.+.++.+|+.+. ++|+.|++.+|++..+|.. .++|++|++++|+ ++.+|.+ .++|+.|++++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~---~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l--p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQ-LTSLPVL--PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh---cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCc-cCcccCc--ccccceeeccC
Confidence 445677888888877777542 3678888888888777753 4678888888876 6677632 35777888888
Q ss_pred CCCcccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcccccccchhhhhhccchhhhcCCCCCcEEE
Q 005708 138 SDVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHWQFESEEDARSNAKFIELGALSRLTSLH 217 (681)
Q Consensus 138 ~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 217 (681)
|.++.+|... .+|+.|++++| .+..+|.. .++|+.|++++|.+. .++. -..+|+.|+
T Consensus 272 N~L~~Lp~lp---~~L~~L~Ls~N-~Lt~LP~~----p~~L~~LdLS~N~L~------------~Lp~---lp~~L~~L~ 328 (788)
T PRK15387 272 NPLTHLPALP---SGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQLA------------SLPA---LPSELCKLW 328 (788)
T ss_pred Cchhhhhhch---hhcCEEECcCC-cccccccc----ccccceeECCCCccc------------cCCC---Ccccccccc
Confidence 8777776532 46777788774 45566642 356888888777431 1111 123566777
Q ss_pred EeCCCCCCCCCCCCCCCccEEEEEecCCcC
Q 005708 218 IDIPKGKIMPSDMSFQNLTSFSIKIGDLEE 247 (681)
Q Consensus 218 l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 247 (681)
+.+|.+..+|.. ..+|+.|++.++....
T Consensus 329 Ls~N~L~~LP~l--p~~Lq~LdLS~N~Ls~ 356 (788)
T PRK15387 329 AYNNQLTSLPTL--PSGLQELSVSDNQLAS 356 (788)
T ss_pred cccCcccccccc--ccccceEecCCCccCC
Confidence 777777666642 2456667666655433
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.51 E-value=4.9e-14 Score=155.41 Aligned_cols=179 Identities=20% Similarity=0.304 Sum_probs=111.3
Q ss_pred CccEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEEEccCCC
Q 005708 37 DLTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLRTLSLHDCR 116 (681)
Q Consensus 37 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~ 116 (681)
+...|+++++.++.+|..+ .++|+.|++++|.+..+|..++ ++|++|++++|++..+|..+. .+|+.|++++|.
T Consensus 179 ~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~ 252 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR 252 (754)
T ss_pred CceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCc
Confidence 4566777777777776544 2567777777777777776543 467777777777777776554 367777777777
Q ss_pred CCCCCc-ccCCCCCccEEEcccCCCcccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcccccccch
Q 005708 117 RFGDLP-LIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHWQFESE 195 (681)
Q Consensus 117 ~~~~l~-~l~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 195 (681)
+..+| .+. .+|++|++++|+++.+|..+. .+|++|++++| .+..+|.. +. .+|+.|++++|...
T Consensus 253 -L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-lp--~sL~~L~Ls~N~Lt------ 317 (754)
T PRK15370 253 -ITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAH-LP--SGITHLNVQSNSLT------ 317 (754)
T ss_pred -cCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCccc-ch--hhHHHHHhcCCccc------
Confidence 66666 332 467777777777777776553 47777777775 34455543 22 35666777666431
Q ss_pred hhhhhccchhhhcCCCCCcEEEEeCCCCCCCCCCCCCCCccEEEEEecCC
Q 005708 196 EDARSNAKFIELGALSRLTSLHIDIPKGKIMPSDMSFQNLTSFSIKIGDL 245 (681)
Q Consensus 196 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~ 245 (681)
..+..+ .++|+.|++++|.+..+|... .++|+.|++..+..
T Consensus 318 ------~LP~~l--~~sL~~L~Ls~N~Lt~LP~~l-~~sL~~L~Ls~N~L 358 (754)
T PRK15370 318 ------ALPETL--PPGLKTLEAGENALTSLPASL-PPELQVLDVSKNQI 358 (754)
T ss_pred ------cCCccc--cccceeccccCCccccCChhh-cCcccEEECCCCCC
Confidence 122211 246677777776665555432 24555555555443
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.48 E-value=3.7e-15 Score=143.52 Aligned_cols=145 Identities=26% Similarity=0.351 Sum_probs=110.0
Q ss_pred EEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCC-CccccCCCCCcEEEccCCCCCC
Q 005708 41 ISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSL-PSSLSFLINLRTLSLHDCRRFG 119 (681)
Q Consensus 41 L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~ 119 (681)
.+.++..+..+|..+. +....+.|..|.|+.||+++|+.+++||.|||++|+|+.+ |++|.++..|-.|-+-+++.++
T Consensus 51 VdCr~~GL~eVP~~LP-~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLP-PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred EEccCCCcccCcccCC-CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 4445555666666553 4566788888888888888888888888888888888666 7888888888888777755588
Q ss_pred CCc--ccCCCCCccEEEcccCCCcccc-hhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCc
Q 005708 120 DLP--LIGELSLLEILDLSESDVSEIP-VSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSF 187 (681)
Q Consensus 120 ~l~--~l~~L~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 187 (681)
++| .|++|..|+.|.+.-+++..++ ..+..+++|..|.+.+ +.+..++...+..+..++++.+..|.
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCc
Confidence 888 7888888888888888887654 4578888888888888 55666776557777777777765554
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.46 E-value=5.7e-13 Score=147.09 Aligned_cols=195 Identities=19% Similarity=0.322 Sum_probs=151.6
Q ss_pred CcccCCCCCCCCCCccEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccC
Q 005708 24 VELKDWPSINTFEDLTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSF 103 (681)
Q Consensus 24 ~~~~~~~~~~~l~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~ 103 (681)
.++..+|.. -.+.++.|++++|.+..+|.... ++|++|++++|.+..+|..+. .+|+.|++++|.+..+|..+.
T Consensus 188 ~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~---~~L~~L~Ls~N~L~~LP~~l~- 261 (754)
T PRK15370 188 LGLTTIPAC-IPEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP---DTIQEMELSINRITELPERLP- 261 (754)
T ss_pred CCcCcCCcc-cccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh---ccccEEECcCCccCcCChhHh-
Confidence 356666642 23689999999999999887653 699999999999999997653 479999999999999998775
Q ss_pred CCCCcEEEccCCCCCCCCc-ccCCCCCccEEEcccCCCcccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEE
Q 005708 104 LINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELY 182 (681)
Q Consensus 104 l~~L~~L~L~~~~~~~~l~-~l~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~ 182 (681)
.+|++|++++|. ++.+| .+. .+|++|++++|+++.+|..+. .+|++|++++|. +..+|.. + .++|+.|+
T Consensus 262 -s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~-l--~~sL~~L~ 331 (754)
T PRK15370 262 -SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNS-LTALPET-L--PPGLKTLE 331 (754)
T ss_pred -CCCCEEECcCCc-cCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCc-cccCCcc-c--cccceecc
Confidence 589999999988 77888 443 589999999999999987654 479999999954 5567764 2 36899999
Q ss_pred cccCcccccccchhhhhhccchhhhcCCCCCcEEEEeCCCCCCCCCCCCCCCccEEEEEecCCcCCC
Q 005708 183 MSHSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKGKIMPSDMSFQNLTSFSIKIGDLEEDP 249 (681)
Q Consensus 183 l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 249 (681)
+++|.+. .++..+ .++|+.|++++|.+..+|... .++|+.|++.++....+|
T Consensus 332 Ls~N~Lt------------~LP~~l--~~sL~~L~Ls~N~L~~LP~~l-p~~L~~LdLs~N~Lt~LP 383 (754)
T PRK15370 332 AGENALT------------SLPASL--PPELQVLDVSKNQITVLPETL-PPTITTLDVSRNALTNLP 383 (754)
T ss_pred ccCCccc------------cCChhh--cCcccEEECCCCCCCcCChhh-cCCcCEEECCCCcCCCCC
Confidence 9988542 233333 268999999999988777542 357888888776654443
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.46 E-value=5e-15 Score=142.61 Aligned_cols=120 Identities=21% Similarity=0.279 Sum_probs=66.7
Q ss_pred cEEEccCCCCCCCCc--ccCCCCCccEEEcccCCCccc-chhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcc
Q 005708 108 RTLSLHDCRRFGDLP--LIGELSLLEILDLSESDVSEI-PVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMS 184 (681)
Q Consensus 108 ~~L~L~~~~~~~~l~--~l~~L~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~ 184 (681)
..++|..|+ ++.+| +|+.+++||.|||++|+|+.+ |..|..+++|..|-+.+++.++++|.+.|++|..|+.|.+.
T Consensus 70 veirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 70 VEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred eEEEeccCC-cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 344555555 55555 556666666666666666655 44566666666666655555666666666666666666654
Q ss_pred cCcccccccchhhhhhccchhhhcCCCCCcEEEEeCCCCCCCCCC--CCCCCccEEE
Q 005708 185 HSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKGKIMPSD--MSFQNLTSFS 239 (681)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~ 239 (681)
-|.+ .....+.++.+++|..|.+..|.+..++.. ..+..++.+.
T Consensus 149 an~i-----------~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlh 194 (498)
T KOG4237|consen 149 ANHI-----------NCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLH 194 (498)
T ss_pred hhhh-----------cchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHh
Confidence 4432 123345566666666666666655554443 3344444443
No 22
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.40 E-value=4.5e-13 Score=150.19 Aligned_cols=142 Identities=27% Similarity=0.306 Sum_probs=109.2
Q ss_pred eEEEeCCcccCCCCCCCCCCccEEEccCCC--CccCCCC--CCCCCCcEEEccCCC-CCCCChHHHhCCCCccEEEecCC
Q 005708 18 FMIKAGVELKDWPSINTFEDLTGISLMFND--IHEVPDE--LECPKLQALFLQENS-PLAIPDRFFQGMKDLKVLDLGGI 92 (681)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~lr~L~l~~~~--~~~l~~~--~~~~~Lr~L~l~~~~-~~~l~~~~~~~l~~Lr~L~L~~~ 92 (681)
.+....+.+..++.-...++++.|-+..|. +..++.. ..++.||+|++++|. +..+|..+ +.+-+||+|+++++
T Consensus 527 r~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL~L~~t 605 (889)
T KOG4658|consen 527 RMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYLDLSDT 605 (889)
T ss_pred EEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhhhhcccccCC
Confidence 345555666777776677789999999997 6666663 389999999999876 56899885 99999999999999
Q ss_pred CCCCCCccccCCCCCcEEEccCCCCCCCCc-ccCCCCCccEEEcccCCCc---ccchhhcCCccCcEEeccC
Q 005708 93 RGFSLPSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSESDVS---EIPVSFGRLGHLRLLDLTD 160 (681)
Q Consensus 93 ~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~-~l~~L~~L~~L~l~~~~i~---~lp~~i~~l~~L~~L~L~~ 160 (681)
.+..+|..+++++.|.+|++..+.....+| ....+.+||+|.+...... ..-.++.++.+|+.+....
T Consensus 606 ~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 606 GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 999999999999999999999988777777 5556999999998776532 1123344455555554433
No 23
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.40 E-value=1.2e-15 Score=148.08 Aligned_cols=304 Identities=14% Similarity=0.136 Sum_probs=188.1
Q ss_pred hccceeecccccCcccccccccccccCCCcEEEEEecCCceEeeeccccccccccCccceeeecccccccccccCcCCCC
Q 005708 289 LRSEILALAEVNDLENMVSDLANDGFNELMFLVIVRCNEMKCLVNSLERTRRVTLHKLEWLAIFLNQNLVEICHGQLPAG 368 (681)
Q Consensus 289 ~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 368 (681)
..|+.|.+.++....+.........+|++++|.+.+|.+++... .......+++|++|.+..|+.+++..... -..
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s---~~sla~~C~~l~~l~L~~c~~iT~~~Lk~-la~ 213 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSS---LLSLARYCRKLRHLNLHSCSSITDVSLKY-LAE 213 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHH---HHHHHHhcchhhhhhhcccchhHHHHHHH-HHH
Confidence 35667777666655544333334456777777777775443211 11123345667777777776666543221 123
Q ss_pred cCCCccEEEEeeCCCCCccccchHHhhcCCCcEEEEeeccCcceeecccccccccccccccCccCEEeeccCCCcccccC
Q 005708 369 CLSNVKRLDVGDCGSMLKILPSHLVQSFQNLQRLRVGRCELLESVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWK 448 (681)
Q Consensus 369 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~ 448 (681)
.+++|+.|.+++|+.++.-.-....+++..++.+...+|..++.=.- ...-...+-+.++++..|..+++...
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l-------~~~~~~~~~i~~lnl~~c~~lTD~~~ 286 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEAL-------LKAAAYCLEILKLNLQHCNQLTDEDL 286 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHH-------HHHhccChHhhccchhhhccccchHH
Confidence 56777777777777666533333445566666666666655432100 00112234455666667766655321
Q ss_pred CCCCcccccccceeeeccCCccccccccccc-cceeeceeecccc-cceeEEEeccCCCCCCCCCCCCccEEEEecCCCc
Q 005708 449 GDTQFVSLHNLKKVRVQDCDELRQVFPTNLG-KKAAVEEMVPYRK-RRDHIHIHATTSTSSPTPSLGNLVSITIRGCGQL 526 (681)
Q Consensus 449 ~~~~~~~l~~L~~L~i~~c~~l~~~~~~~l~-~~~~L~~L~l~~~-~l~~l~~~~~~~~~~~~~~~~~L~~L~i~~c~~l 526 (681)
... -..+..|+.++.++|..+++..-..++ +..+|+.|.+.+| ++....|..- -.+++.|+.+++.+|..+
T Consensus 287 ~~i-~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l------~rn~~~Le~l~~e~~~~~ 359 (483)
T KOG4341|consen 287 WLI-ACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTML------GRNCPHLERLDLEECGLI 359 (483)
T ss_pred HHH-hhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhh------hcCChhhhhhccccccee
Confidence 111 134678889999998887766443443 4567999999999 6655422111 237889999999999877
Q ss_pred ceecchhhHhhhccccEeEEcccccccceeccccccccccCCCCcceeccccceeecccCCcccccccCCcccccccccc
Q 005708 527 RQLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDDGGVGLQGASTEKITFPSLFIIQLCHLDSLACFFSAGSHATIEFLAL 606 (681)
Q Consensus 527 ~~l~~~~~~~~l~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~sL 606 (681)
.+..-.+...+.|.||+|.+++|..+++- +...+.........|..+.+.+||.++.--...+. .++.|
T Consensus 360 ~d~tL~sls~~C~~lr~lslshce~itD~--------gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~---~c~~L 428 (483)
T KOG4341|consen 360 TDGTLASLSRNCPRLRVLSLSHCELITDE--------GIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS---ICRNL 428 (483)
T ss_pred hhhhHhhhccCCchhccCChhhhhhhhhh--------hhhhhhhccccccccceeeecCCCCchHHHHHHHh---hCccc
Confidence 76533344568899999999999877764 11111223345778999999999998877666665 48999
Q ss_pred cEEEeccCCCceeec
Q 005708 607 AALLIIDCPSMKTFG 621 (681)
Q Consensus 607 ~~L~i~~C~~L~~~~ 621 (681)
|.+++.+|..+.+-+
T Consensus 429 eri~l~~~q~vtk~~ 443 (483)
T KOG4341|consen 429 ERIELIDCQDVTKEA 443 (483)
T ss_pred ceeeeechhhhhhhh
Confidence 999999998887643
No 24
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.22 E-value=9.1e-12 Score=111.85 Aligned_cols=130 Identities=28% Similarity=0.313 Sum_probs=41.2
Q ss_pred ccCCCCCCCCCCccEEEccCCCCccCCCCC-CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccc-cC
Q 005708 26 LKDWPSINTFEDLTGISLMFNDIHEVPDEL-ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSL-SF 103 (681)
Q Consensus 26 ~~~~~~~~~l~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i-~~ 103 (681)
++.++...+..++|.|++.+|.++.+.... .+.+|+.|++++|.+..++. +..+++|++|++++|.+..+...+ ..
T Consensus 9 i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~ 86 (175)
T PF14580_consen 9 IEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKN 86 (175)
T ss_dssp ---------------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH
T ss_pred cccccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHh
Confidence 444555555566777777777777765544 46777777777777777764 567777777777777777775544 35
Q ss_pred CCCCcEEEccCCCCCCCCc---ccCCCCCccEEEcccCCCcccch----hhcCCccCcEEec
Q 005708 104 LINLRTLSLHDCRRFGDLP---LIGELSLLEILDLSESDVSEIPV----SFGRLGHLRLLDL 158 (681)
Q Consensus 104 l~~L~~L~L~~~~~~~~l~---~l~~L~~L~~L~l~~~~i~~lp~----~i~~l~~L~~L~L 158 (681)
+++|+.|++++|+ +.++. .++.+++|++|++.+|.+...+. .+..+++|+.||-
T Consensus 87 lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 87 LPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 7777777777776 54443 55666777777777666654321 2444555555544
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.21 E-value=1.3e-11 Score=126.58 Aligned_cols=203 Identities=21% Similarity=0.155 Sum_probs=119.6
Q ss_pred CCCCccEEEccCCCCc-----cCCCCC-CCCCCcEEEccCCCCCCCC------hHHHhCCCCccEEEecCCCCC-CCCcc
Q 005708 34 TFEDLTGISLMFNDIH-----EVPDEL-ECPKLQALFLQENSPLAIP------DRFFQGMKDLKVLDLGGIRGF-SLPSS 100 (681)
Q Consensus 34 ~l~~lr~L~l~~~~~~-----~l~~~~-~~~~Lr~L~l~~~~~~~l~------~~~~~~l~~Lr~L~L~~~~~~-~lp~~ 100 (681)
.+..++.++++++.+. .++... ..+.++.|+++++.+...+ ...|..+++|+.|++++|.+. ..+..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 3445777888877763 233333 5566788888777655211 123566778888888877774 34444
Q ss_pred ccCCCC---CcEEEccCCCCCCCC-----c-ccCCC-CCccEEEcccCCCc-----ccchhhcCCccCcEEeccCCCCCC
Q 005708 101 LSFLIN---LRTLSLHDCRRFGDL-----P-LIGEL-SLLEILDLSESDVS-----EIPVSFGRLGHLRLLDLTDCVHLE 165 (681)
Q Consensus 101 i~~l~~---L~~L~L~~~~~~~~l-----~-~l~~L-~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~~~ 165 (681)
+..+.+ |++|++++|. +... . .+..+ ++|+.|++++|.++ .++..+..+.+|++|++++|....
T Consensus 101 ~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 179 (319)
T cd00116 101 LESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD 179 (319)
T ss_pred HHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch
Confidence 444444 8888888777 4321 1 34556 77888888887776 345556667778888887765432
Q ss_pred c----cChhhhcCCCCCcEEEcccCcccccccchhhhhhccchhhhcCCCCCcEEEEeCCCCCCCC--CC-----CCCCC
Q 005708 166 L----IPRDVLSSLRKLEELYMSHSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKGKIMP--SD-----MSFQN 234 (681)
Q Consensus 166 ~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~-----~~l~~ 234 (681)
. ++.. +..+++|++|++++|.+... ........+..+++|++|++++|.+.... .. ...+.
T Consensus 180 ~~~~~l~~~-l~~~~~L~~L~L~~n~i~~~-------~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~ 251 (319)
T cd00116 180 AGIRALAEG-LKANCNLEVLDLNNNGLTDE-------GASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNIS 251 (319)
T ss_pred HHHHHHHHH-HHhCCCCCEEeccCCccChH-------HHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCC
Confidence 1 2222 34556788888877753211 11234455666777888888777654210 00 11356
Q ss_pred ccEEEEEecCC
Q 005708 235 LTSFSIKIGDL 245 (681)
Q Consensus 235 L~~L~l~~~~~ 245 (681)
|+.|++.++..
T Consensus 252 L~~L~l~~n~i 262 (319)
T cd00116 252 LLTLSLSCNDI 262 (319)
T ss_pred ceEEEccCCCC
Confidence 66666666543
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.20 E-value=7.6e-12 Score=128.20 Aligned_cols=197 Identities=21% Similarity=0.103 Sum_probs=126.5
Q ss_pred EEEccCCCCc--cCCCCC-CCCCCcEEEccCCCCC-----CCChHHHhCCCCccEEEecCCCCCC-------CCccccCC
Q 005708 40 GISLMFNDIH--EVPDEL-ECPKLQALFLQENSPL-----AIPDRFFQGMKDLKVLDLGGIRGFS-------LPSSLSFL 104 (681)
Q Consensus 40 ~L~l~~~~~~--~l~~~~-~~~~Lr~L~l~~~~~~-----~l~~~~~~~l~~Lr~L~L~~~~~~~-------lp~~i~~l 104 (681)
+|++..+.+. .....+ .+++|+.|++.++.+. .++.. +...+.|+.|+++++.+.. ++..++.+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~-l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASA-LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHH-HhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 3455555553 222222 5667999999999874 23332 4677789999999887753 23456678
Q ss_pred CCCcEEEccCCCCCCCCc-ccCCCC---CccEEEcccCCCc-----ccchhhcCC-ccCcEEeccCCCCCCc----cChh
Q 005708 105 INLRTLSLHDCRRFGDLP-LIGELS---LLEILDLSESDVS-----EIPVSFGRL-GHLRLLDLTDCVHLEL----IPRD 170 (681)
Q Consensus 105 ~~L~~L~L~~~~~~~~l~-~l~~L~---~L~~L~l~~~~i~-----~lp~~i~~l-~~L~~L~L~~~~~~~~----~~~~ 170 (681)
.+|+.|++++|......+ .+..+. +|++|++++|++. .+...+..+ ++|+.|++++|..... ++..
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 899999999888433343 444444 4999999998876 234456677 8899999999765422 2222
Q ss_pred hhcCCCCCcEEEcccCcccccccchhhhhhccchhhhcCCCCCcEEEEeCCCCCCCC-----CC-CCCCCccEEEEEecC
Q 005708 171 VLSSLRKLEELYMSHSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKGKIMP-----SD-MSFQNLTSFSIKIGD 244 (681)
Q Consensus 171 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-----~~-~~l~~L~~L~l~~~~ 244 (681)
+..+++|++|++++|..... .....+..+..+++|++|++++|.+.... .. ..+++|+.|++.++.
T Consensus 161 -~~~~~~L~~L~l~~n~l~~~-------~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 161 -LRANRDLKELNLANNGIGDA-------GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred -HHhCCCcCEEECcCCCCchH-------HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 56677899999988764211 11234456667788999998888764221 11 345667777666654
Q ss_pred C
Q 005708 245 L 245 (681)
Q Consensus 245 ~ 245 (681)
.
T Consensus 233 l 233 (319)
T cd00116 233 L 233 (319)
T ss_pred C
Confidence 3
No 27
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.16 E-value=5e-13 Score=130.11 Aligned_cols=263 Identities=14% Similarity=0.135 Sum_probs=156.7
Q ss_pred HHHHHHhccceeecccccCcccccccccccccCCCcEEEEEecCCceEeeeccccccccccCccceeeeccccccccccc
Q 005708 283 WIKNLLLRSEILALAEVNDLENMVSDLANDGFNELMFLVIVRCNEMKCLVNSLERTRRVTLHKLEWLAIFLNQNLVEICH 362 (681)
Q Consensus 283 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 362 (681)
.+...++.+++|.+..|..+++..-.....++++|+++.++.|+.+..-... ........++.+..+||..++.-..
T Consensus 184 sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~---~~~rG~~~l~~~~~kGC~e~~le~l 260 (483)
T KOG4341|consen 184 SLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQ---ALQRGCKELEKLSLKGCLELELEAL 260 (483)
T ss_pred HHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcch---HHhccchhhhhhhhcccccccHHHH
Confidence 4555678888888888887777654444456888888888888776541000 0223344466776677765432111
Q ss_pred CcCCCCcCCCccEEEEeeCCCCCccccchHHhhcCCCcEEEEeeccCcceeecccccccccccccccCccCEEeeccCCC
Q 005708 363 GQLPAGCLSNVKRLDVGDCGSMLKILPSHLVQSFQNLQRLRVGRCELLESVFEIERVNIAKEETELFSSLEKLTLIDLPR 442 (681)
Q Consensus 363 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 442 (681)
......++.+.++++.+|..+++..-......+..|+.|..++|..+.+.+... -...-++|+.|.+..|..
T Consensus 261 -~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~a-------Lg~~~~~L~~l~l~~c~~ 332 (483)
T KOG4341|consen 261 -LKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWA-------LGQHCHNLQVLELSGCQQ 332 (483)
T ss_pred -HHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHH-------HhcCCCceEEEeccccch
Confidence 111235566777777788777776433444567888888888887755432211 112346666666666665
Q ss_pred cccccCCCCCcccccccceeeeccCCccccccccccccceeeceeecccccceeEEEeccCCCCCCCCCCCCccEEEEec
Q 005708 443 MTDIWKGDTQFVSLHNLKKVRVQDCDELRQVFPTNLGKKAAVEEMVPYRKRRDHIHIHATTSTSSPTPSLGNLVSITIRG 522 (681)
Q Consensus 443 L~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~i~~ 522 (681)
+.+....... .+++.|+.+++.+|.-..+. .+.++ -.+++.|+.|.++.
T Consensus 333 fsd~~ft~l~-rn~~~Le~l~~e~~~~~~d~-------------------tL~sl-----------s~~C~~lr~lslsh 381 (483)
T KOG4341|consen 333 FSDRGFTMLG-RNCPHLERLDLEECGLITDG-------------------TLASL-----------SRNCPRLRVLSLSH 381 (483)
T ss_pred hhhhhhhhhh-cCChhhhhhcccccceehhh-------------------hHhhh-----------ccCCchhccCChhh
Confidence 5443221111 24455555555554332222 01111 23778888888888
Q ss_pred CCCcceecc---hhhHhhhccccEeEEcccccccceeccccccccccCCCCcceeccccceeecccCCcccccccCCccc
Q 005708 523 CGQLRQLFT---TSMVKSLVRLESLEVSSCPTLQEIIMDDDGGVGLQGASTEKITFPSLFIIQLCHLDSLACFFSAGSHA 599 (681)
Q Consensus 523 c~~l~~l~~---~~~~~~l~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~ 599 (681)
|..+++-.. .....+...|+.+++++||.+++-.- ..+...++|+.+++.+|....+-+...+..
T Consensus 382 ce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L------------e~l~~c~~Leri~l~~~q~vtk~~i~~~~~ 449 (483)
T KOG4341|consen 382 CELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL------------EHLSICRNLERIELIDCQDVTKEAISRFAT 449 (483)
T ss_pred hhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH------------HHHhhCcccceeeeechhhhhhhhhHHHHh
Confidence 877765411 11234667889999999998776411 123447889999999998888776555543
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.12 E-value=3.6e-12 Score=128.73 Aligned_cols=174 Identities=28% Similarity=0.375 Sum_probs=113.7
Q ss_pred ccEEEccCCCCccCCCCC-CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEEEccCCC
Q 005708 38 LTGISLMFNDIHEVPDEL-ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLRTLSLHDCR 116 (681)
Q Consensus 38 lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~ 116 (681)
....+++.|++..+|... .+..|+.+.+..|.+..+|..+ ..+..|.+|+|+.|++..+|..++.|+ |+.|.+++|+
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc
Confidence 345666667776666655 5566666677777777666653 667777777777777777776666654 6777777666
Q ss_pred CCCCCc-ccCCCCCccEEEcccCCCcccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcccccccch
Q 005708 117 RFGDLP-LIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHWQFESE 195 (681)
Q Consensus 117 ~~~~l~-~l~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 195 (681)
++.+| .++.+..|..||.+.|.+..+|..++.+..|+.|.++. +.+..+|.+ +.. -.|..||++.|++
T Consensus 155 -l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR-n~l~~lp~E-l~~-LpLi~lDfScNki------- 223 (722)
T KOG0532|consen 155 -LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEE-LCS-LPLIRLDFSCNKI------- 223 (722)
T ss_pred -cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHH-HhC-CceeeeecccCce-------
Confidence 66666 66666677777777777777777777777777777766 334466665 453 3466677766632
Q ss_pred hhhhhccchhhhcCCCCCcEEEEeCCCCCCCCCC
Q 005708 196 EDARSNAKFIELGALSRLTSLHIDIPKGKIMPSD 229 (681)
Q Consensus 196 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 229 (681)
..+|..+.+|.+|++|-+.+|-+..-|..
T Consensus 224 -----s~iPv~fr~m~~Lq~l~LenNPLqSPPAq 252 (722)
T KOG0532|consen 224 -----SYLPVDFRKMRHLQVLQLENNPLQSPPAQ 252 (722)
T ss_pred -----eecchhhhhhhhheeeeeccCCCCCChHH
Confidence 35666677777777777777666555543
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.09 E-value=1.4e-10 Score=104.30 Aligned_cols=128 Identities=26% Similarity=0.253 Sum_probs=34.3
Q ss_pred CCCCccEEEecCCCCCCCCcccc-CCCCCcEEEccCCCCCCCCcccCCCCCccEEEcccCCCcccchhh-cCCccCcEEe
Q 005708 80 GMKDLKVLDLGGIRGFSLPSSLS-FLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSESDVSEIPVSF-GRLGHLRLLD 157 (681)
Q Consensus 80 ~l~~Lr~L~L~~~~~~~lp~~i~-~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~l~~~~i~~lp~~i-~~l~~L~~L~ 157 (681)
+..++|.|+|.+|.|..+. .++ .+.+|+.|++++|. ++.++.+..+++|+.|++++|.++.++..+ ..+++|++|+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCC-CccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 4444555555555554443 233 34555555555555 555555555555555555555555554433 2455566666
Q ss_pred ccCCCCCCccC-hhhhcCCCCCcEEEcccCcccccccchhhhhhccchhhhcCCCCCcEEEE
Q 005708 158 LTDCVHLELIP-RDVLSSLRKLEELYMSHSFCHWQFESEEDARSNAKFIELGALSRLTSLHI 218 (681)
Q Consensus 158 L~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 218 (681)
+++|.. ..+. -..+..+++|+.|++.+|.+.. .......-+..+|+|+.|+-
T Consensus 95 L~~N~I-~~l~~l~~L~~l~~L~~L~L~~NPv~~--------~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 95 LSNNKI-SDLNELEPLSSLPKLRVLSLEGNPVCE--------KKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -TTS----SCCCCGGGGG-TT--EEE-TT-GGGG--------STTHHHHHHHH-TT-SEETT
T ss_pred CcCCcC-CChHHhHHHHcCCCcceeeccCCcccc--------hhhHHHHHHHHcChhheeCC
Confidence 555332 1111 1114556666666666654321 11123334556666666653
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.05 E-value=1.1e-11 Score=125.40 Aligned_cols=193 Identities=22% Similarity=0.283 Sum_probs=150.4
Q ss_pred EEEccCCCCccCCCCC---CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEEEccCCC
Q 005708 40 GISLMFNDIHEVPDEL---ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLRTLSLHDCR 116 (681)
Q Consensus 40 ~L~l~~~~~~~l~~~~---~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~ 116 (681)
.|.+++-++...|... .+..-...+++.|.+..+|.. +..+-.|..+.++.|.+..+|..++++..|.+|+++.|+
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~-~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEE-ACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ 132 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccccccCchH-HHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch
Confidence 3555566666555433 555566678888888888887 477778888888888888888888888889999998888
Q ss_pred CCCCCc-ccCCCCCccEEEcccCCCcccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcccccccch
Q 005708 117 RFGDLP-LIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHWQFESE 195 (681)
Q Consensus 117 ~~~~l~-~l~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 195 (681)
+..+| .++.|+ |+.|-+++|+++.+|.+++.+..|.+|+.+.|. +..+|.. ++++.+|+.|.+..|.
T Consensus 133 -lS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn~-------- 200 (722)
T KOG0532|consen 133 -LSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRNH-------- 200 (722)
T ss_pred -hhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhhh--------
Confidence 77777 666654 888888888898888888888888888888854 5577776 7888888888887773
Q ss_pred hhhhhccchhhhcCCCCCcEEEEeCCCCCCCCCC-CCCCCccEEEEEecCCcCCCc
Q 005708 196 EDARSNAKFIELGALSRLTSLHIDIPKGKIMPSD-MSFQNLTSFSIKIGDLEEDPL 250 (681)
Q Consensus 196 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~ 250 (681)
....+.++..|+ |..|+++.|++..+|.. ..|+.|+.|.+..+....-+.
T Consensus 201 ----l~~lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 201 ----LEDLPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPA 251 (722)
T ss_pred ----hhhCCHHHhCCc-eeeeecccCceeecchhhhhhhhheeeeeccCCCCCChH
Confidence 346777887554 78888888888888877 788888888888877766555
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.97 E-value=5.8e-11 Score=110.68 Aligned_cols=128 Identities=28% Similarity=0.342 Sum_probs=98.7
Q ss_pred CCCCCCccEEEccCCCCccCCCCC-CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEE
Q 005708 32 INTFEDLTGISLMFNDIHEVPDEL-ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLRTL 110 (681)
Q Consensus 32 ~~~l~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L 110 (681)
+..++.|..+++++|.++.+.... -.|++|.|++++|.+..+.. +..+++|..|||++|.+.++-.+-.++.+.++|
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 344556778888888888776666 55888888888888877765 567888888888888887777666677788888
Q ss_pred EccCCCCCCCCcccCCCCCccEEEcccCCCcccc--hhhcCCccCcEEeccCCC
Q 005708 111 SLHDCRRFGDLPLIGELSLLEILDLSESDVSEIP--VSFGRLGHLRLLDLTDCV 162 (681)
Q Consensus 111 ~L~~~~~~~~l~~l~~L~~L~~L~l~~~~i~~lp--~~i~~l~~L~~L~L~~~~ 162 (681)
.|.+|. +.++..+++|++|.+||+++|+|..+- ..|++++.|+++.|.+|+
T Consensus 358 ~La~N~-iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 358 KLAQNK-IETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred ehhhhh-HhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 888887 778888888888888888888887653 467888888888887755
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.95 E-value=1.3e-10 Score=108.49 Aligned_cols=128 Identities=26% Similarity=0.302 Sum_probs=62.5
Q ss_pred CCccEEEecCCCCCCCCccccCCCCCcEEEccCCCCCCCCcccCCCCCccEEEcccCCCcccchhhcCCccCcEEeccCC
Q 005708 82 KDLKVLDLGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDC 161 (681)
Q Consensus 82 ~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~ 161 (681)
+.|..|||++|.|..+-.++.-.+.+|.|++++|. +..+..+..|++|+.||+++|.++++-.+=.++-|.+.|.|.+
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~- 361 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ- 361 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccc-eeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh-
Confidence 44555555555555555555555555555555555 4444445555555555555555554444444445555555555
Q ss_pred CCCCccChhhhcCCCCCcEEEcccCcccccccchhhhhhccchhhhcCCCCCcEEEEeCCCC
Q 005708 162 VHLELIPRDVLSSLRKLEELYMSHSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKG 223 (681)
Q Consensus 162 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 223 (681)
+.+..+.. ++++-+|..|++++|.+ ..-.....+++++.|+++.+.+|.+
T Consensus 362 N~iE~LSG--L~KLYSLvnLDl~~N~I----------e~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 362 NKIETLSG--LRKLYSLVNLDLSSNQI----------EELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhHhhhhh--hHhhhhheeccccccch----------hhHHHhcccccccHHHHHhhcCCCc
Confidence 33333333 44555555555555433 1112233445555555555555444
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.94 E-value=7.7e-10 Score=116.71 Aligned_cols=192 Identities=31% Similarity=0.383 Sum_probs=145.3
Q ss_pred EEEccCCCC-ccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCC-CccEEEecCCCCCCCCccccCCCCCcEEEccCCCC
Q 005708 40 GISLMFNDI-HEVPDELECPKLQALFLQENSPLAIPDRFFQGMK-DLKVLDLGGIRGFSLPSSLSFLINLRTLSLHDCRR 117 (681)
Q Consensus 40 ~L~l~~~~~-~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~-~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~ 117 (681)
.+....+.+ ..+......+.++.|.+.++.+.+++... ..+. +|+.|++++|++..+|..++.+++|+.|++++|+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~- 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND- 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCch-
Confidence 466666665 33333336678888899999888888753 4553 8999999999988888888889999999999888
Q ss_pred CCCCc-ccCCCCCccEEEcccCCCcccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcccccccchh
Q 005708 118 FGDLP-LIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHWQFESEE 196 (681)
Q Consensus 118 ~~~l~-~l~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 196 (681)
+.++| ..+.+++|+.|+++++.+..+|..+..+..|++|.++++... ..+.. +.++.++..+.+.++..
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~-~~~~~~l~~l~l~~n~~-------- 244 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSS-LSNLKNLSGLELSNNKL-------- 244 (394)
T ss_pred hhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchh-hhhcccccccccCCcee--------
Confidence 88888 444888899999999999888888777878899988885444 33333 67888888888766643
Q ss_pred hhhhccchhhhcCCCCCcEEEEeCCCCCCCCCCCCCCCccEEEEEecCCcC
Q 005708 197 DARSNAKFIELGALSRLTSLHIDIPKGKIMPSDMSFQNLTSFSIKIGDLEE 247 (681)
Q Consensus 197 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 247 (681)
...+..++.+++++.|++++|.+..++....+.+++.|++.......
T Consensus 245 ----~~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 245 ----EDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred ----eeccchhccccccceeccccccccccccccccCccCEEeccCccccc
Confidence 12356778888899999999988888777777888888877655433
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.91 E-value=1.3e-09 Score=115.09 Aligned_cols=185 Identities=30% Similarity=0.391 Sum_probs=154.9
Q ss_pred cCCCCCCCCCCccEEEccCCCCccCCCCCCCC--CCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccCC
Q 005708 27 KDWPSINTFEDLTGISLMFNDIHEVPDELECP--KLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFL 104 (681)
Q Consensus 27 ~~~~~~~~l~~lr~L~l~~~~~~~l~~~~~~~--~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l 104 (681)
.....+..+..+..+++.++.+..++...... +|+.|++++|.+..++.. .+.++.|+.|++++|++..+|...+..
T Consensus 107 ~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~ 185 (394)
T COG4886 107 SNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNL 185 (394)
T ss_pred cCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCchhhhhhhhhhhh
Confidence 33444556678999999999999999888543 899999999999999754 589999999999999999999988899
Q ss_pred CCCcEEEccCCCCCCCCc-ccCCCCCccEEEcccCCCcccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEc
Q 005708 105 INLRTLSLHDCRRFGDLP-LIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYM 183 (681)
Q Consensus 105 ~~L~~L~L~~~~~~~~l~-~l~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l 183 (681)
..|+.|++++|. +.++| .++...+|++|.+++|.+...+..+.++.++..+.+.++ .+..++.. ++.+..++.|++
T Consensus 186 ~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n-~~~~~~~~-~~~l~~l~~L~~ 262 (394)
T COG4886 186 SNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN-KLEDLPES-IGNLSNLETLDL 262 (394)
T ss_pred hhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCc-eeeeccch-hccccccceecc
Confidence 999999999999 99998 557778899999999988888888999999999998774 44443443 789999999999
Q ss_pred ccCcccccccchhhhhhccchhhhcCCCCCcEEEEeCCCCCCCCC
Q 005708 184 SHSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKGKIMPS 228 (681)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 228 (681)
++|.+ ..+..++.+.+++.|+++++.....+.
T Consensus 263 s~n~i-------------~~i~~~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 263 SNNQI-------------SSISSLGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ccccc-------------cccccccccCccCEEeccCccccccch
Confidence 99864 233338899999999999988765544
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=9e-10 Score=108.36 Aligned_cols=204 Identities=20% Similarity=0.177 Sum_probs=126.8
Q ss_pred CCCCCCccEEEccCCCCccCCC--CC-CCCCCcEEEccCCCCCCC--ChHHHhCCCCccEEEecCCCCCCCCcc--ccCC
Q 005708 32 INTFEDLTGISLMFNDIHEVPD--EL-ECPKLQALFLQENSPLAI--PDRFFQGMKDLKVLDLGGIRGFSLPSS--LSFL 104 (681)
Q Consensus 32 ~~~l~~lr~L~l~~~~~~~l~~--~~-~~~~Lr~L~l~~~~~~~l--~~~~~~~l~~Lr~L~L~~~~~~~lp~~--i~~l 104 (681)
-.++++||.+.+.+.....++. .. .|+++|.|+++.|-+..+ -..+...+++|+.|+++.|.+....++ -..+
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 3566788888888888776653 33 788888899888877643 234567888888888888887443322 2367
Q ss_pred CCCcEEEccCCCCC-CCCc-ccCCCCCccEEEcccCC-CcccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEE
Q 005708 105 INLRTLSLHDCRRF-GDLP-LIGELSLLEILDLSESD-VSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEEL 181 (681)
Q Consensus 105 ~~L~~L~L~~~~~~-~~l~-~l~~L~~L~~L~l~~~~-i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L 181 (681)
.+|+.|.++.|... +++. ....+++|+.|++.+|. +..-......++.|+.|+|++++.+..-.....+.++.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 78888888888732 1222 55677888888888873 322223344567888888888766543322226777888888
Q ss_pred EcccCcccccccchhhhhhccchhhhcCCCCCcEEEEeCCCCCCCCCC---CCCCCccEEEE
Q 005708 182 YMSHSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKGKIMPSD---MSFQNLTSFSI 240 (681)
Q Consensus 182 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~---~~l~~L~~L~l 240 (681)
.++.|.+.. +.+ .......-....++|+.|++..|.+...+.. ..+++|+.|.+
T Consensus 277 nls~tgi~s-i~~----~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 277 NLSSTGIAS-IAE----PDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred hccccCcch-hcC----CCccchhhhcccccceeeecccCccccccccchhhccchhhhhhc
Confidence 777664311 000 0111222245567777777777776555443 33344444443
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=2.2e-09 Score=105.68 Aligned_cols=183 Identities=22% Similarity=0.148 Sum_probs=133.8
Q ss_pred CCCCCCCccEEEccCCCCccCCC---CC-CCCCCcEEEccCCCCCCCC-hHHHhCCCCccEEEecCCCCC--CCCccccC
Q 005708 31 SINTFEDLTGISLMFNDIHEVPD---EL-ECPKLQALFLQENSPLAIP-DRFFQGMKDLKVLDLGGIRGF--SLPSSLSF 103 (681)
Q Consensus 31 ~~~~l~~lr~L~l~~~~~~~l~~---~~-~~~~Lr~L~l~~~~~~~l~-~~~~~~l~~Lr~L~L~~~~~~--~lp~~i~~ 103 (681)
....++++|.|+++.|-+..... .. .+|+|+.|+++.|.+...- ...-..+++|+.|.++.|.+. .+-.....
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 35677899999999998864433 22 8899999999999876322 111246789999999999884 44445567
Q ss_pred CCCCcEEEccCCCCCCCCc-ccCCCCCccEEEcccCCCcccc--hhhcCCccCcEEeccCCCCCC-ccCh----hhhcCC
Q 005708 104 LINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSESDVSEIP--VSFGRLGHLRLLDLTDCVHLE-LIPR----DVLSSL 175 (681)
Q Consensus 104 l~~L~~L~L~~~~~~~~l~-~l~~L~~L~~L~l~~~~i~~lp--~~i~~l~~L~~L~L~~~~~~~-~~~~----~~l~~l 175 (681)
+++|+.|++..|..+..-. ....+..|+.|||++|++..++ ...+.++.|+.|+++.|.... ..|+ .....+
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f 300 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTF 300 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccc
Confidence 8999999999996222222 5566788999999999888776 467899999999999865432 1122 113578
Q ss_pred CCCcEEEcccCcccccccchhhhhhccchhhhcCCCCCcEEEEeCCCC
Q 005708 176 RKLEELYMSHSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKG 223 (681)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 223 (681)
++|+.|++..|.+ ........+..+++|++|.+..+.+
T Consensus 301 ~kL~~L~i~~N~I----------~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 301 PKLEYLNISENNI----------RDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred ccceeeecccCcc----------ccccccchhhccchhhhhhcccccc
Confidence 8999999988865 1234566778888888888877665
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.53 E-value=5.4e-08 Score=71.70 Aligned_cols=59 Identities=36% Similarity=0.486 Sum_probs=38.6
Q ss_pred CCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCC-ccccCCCCCcEEEccCCC
Q 005708 58 PKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLP-SSLSFLINLRTLSLHDCR 116 (681)
Q Consensus 58 ~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~ 116 (681)
|+|++|++++|.+..++.+.|..+++|++|++++|.+..++ .+|.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45666666666666666666667777777777766665553 355666666666666664
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.47 E-value=4.7e-07 Score=100.16 Aligned_cols=104 Identities=27% Similarity=0.390 Sum_probs=89.0
Q ss_pred CccEEEecCCCC-CCCCccccCCCCCcEEEccCCCCCCCCc-ccCCCCCccEEEcccCCCc-ccchhhcCCccCcEEecc
Q 005708 83 DLKVLDLGGIRG-FSLPSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSESDVS-EIPVSFGRLGHLRLLDLT 159 (681)
Q Consensus 83 ~Lr~L~L~~~~~-~~lp~~i~~l~~L~~L~L~~~~~~~~l~-~l~~L~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~L~ 159 (681)
.++.|+|++|.+ ..+|..++.+++|+.|+|++|...+.+| .++++++|++|++++|.+. .+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 478899999988 6789899999999999999998666788 7999999999999999987 789999999999999999
Q ss_pred CCCCCCccChhhhcC-CCCCcEEEcccCc
Q 005708 160 DCVHLELIPRDVLSS-LRKLEELYMSHSF 187 (681)
Q Consensus 160 ~~~~~~~~~~~~l~~-l~~L~~L~l~~~~ 187 (681)
+|...+.+|.. ++. ..++..+++.+|.
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCc
Confidence 98888888887 454 4567788887774
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.46 E-value=4e-07 Score=100.67 Aligned_cols=106 Identities=25% Similarity=0.309 Sum_probs=89.9
Q ss_pred CCcEEEccCCCCCCCCc-ccCCCCCccEEEcccCCCc-ccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEc
Q 005708 106 NLRTLSLHDCRRFGDLP-LIGELSLLEILDLSESDVS-EIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYM 183 (681)
Q Consensus 106 ~L~~L~L~~~~~~~~l~-~l~~L~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l 183 (681)
.++.|+|++|.....+| .++++++|+.|++++|.+. .+|..++.+++|+.|++++|...+.+|.. ++++++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 47899999999666778 8999999999999999997 88999999999999999998888888887 899999999999
Q ss_pred ccCcccccccchhhhhhccchhhhcCC-CCCcEEEEeCCCC
Q 005708 184 SHSFCHWQFESEEDARSNAKFIELGAL-SRLTSLHIDIPKG 223 (681)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~ 223 (681)
++|... | ..|..+..+ .++..+++.+|..
T Consensus 498 s~N~l~----g-------~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 498 NGNSLS----G-------RVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred cCCccc----c-------cCChHHhhccccCceEEecCCcc
Confidence 998642 2 556666653 4677888888764
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.43 E-value=2.4e-08 Score=105.40 Aligned_cols=191 Identities=26% Similarity=0.264 Sum_probs=118.3
Q ss_pred CCCCccEEEccCCCCccCCCCC-CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEEEc
Q 005708 34 TFEDLTGISLMFNDIHEVPDEL-ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLRTLSL 112 (681)
Q Consensus 34 ~l~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L 112 (681)
.+..+..+++..|.+..+.... .+++|+.|++.+|.+..+... +..+++|++|++++|.|..+.. +..+..|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheeccccccccccc-hhhccchhhhee
Confidence 3455555666666666543323 677788888888887776653 3667888888888888776653 556666888888
Q ss_pred cCCCCCCCCcccCCCCCccEEEcccCCCcccchh-hcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCccccc
Q 005708 113 HDCRRFGDLPLIGELSLLEILDLSESDVSEIPVS-FGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHWQ 191 (681)
Q Consensus 113 ~~~~~~~~l~~l~~L~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 191 (681)
.+|. +..++.+..+++|+.+++++|.+..+... ...+.+++.+.+.++. +..+.. +..+..+..+++..+.+
T Consensus 148 ~~N~-i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~-i~~i~~--~~~~~~l~~~~l~~n~i--- 220 (414)
T KOG0531|consen 148 SGNL-ISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS-IREIEG--LDLLKKLVLLSLLDNKI--- 220 (414)
T ss_pred ccCc-chhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc-hhcccc--hHHHHHHHHhhcccccc---
Confidence 8887 77777777778888888888877776543 4677777777777743 322222 23334444444444432
Q ss_pred ccchhhhhhccchhhhcCCCC--CcEEEEeCCCCCCC-CCCCCCCCccEEEEEec
Q 005708 192 FESEEDARSNAKFIELGALSR--LTSLHIDIPKGKIM-PSDMSFQNLTSFSIKIG 243 (681)
Q Consensus 192 ~~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~~~-~~~~~l~~L~~L~l~~~ 243 (681)
....++..+.. |+.+++.++.+... .....+.++..+.+...
T Consensus 221 ----------~~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 221 ----------SKLEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSN 265 (414)
T ss_pred ----------eeccCcccchhHHHHHHhcccCccccccccccccccccccchhhc
Confidence 22223333333 77788888777655 23344555555554443
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.42 E-value=1.7e-07 Score=69.02 Aligned_cols=59 Identities=29% Similarity=0.471 Sum_probs=54.5
Q ss_pred CCccEEEccCCCCccCCCCC--CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCC
Q 005708 36 EDLTGISLMFNDIHEVPDEL--ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRG 94 (681)
Q Consensus 36 ~~lr~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~ 94 (681)
++|+.|++++|.+..++... .+++|++|++++|.+..++++.|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 47899999999999998755 899999999999999999998999999999999999974
No 42
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.36 E-value=1.1e-07 Score=91.55 Aligned_cols=181 Identities=21% Similarity=0.171 Sum_probs=100.3
Q ss_pred CCCCCcEEEccCCCCC-CC---ChHHHhCCCCccEEEecCCCCCCC--------------CccccCCCCCcEEEccCCCC
Q 005708 56 ECPKLQALFLQENSPL-AI---PDRFFQGMKDLKVLDLGGIRGFSL--------------PSSLSFLINLRTLSLHDCRR 117 (681)
Q Consensus 56 ~~~~Lr~L~l~~~~~~-~l---~~~~~~~l~~Lr~L~L~~~~~~~l--------------p~~i~~l~~L~~L~L~~~~~ 117 (681)
.+++|++|+|+.|.+. +- ..+.++.+..|+.|.|.+|.++.. ...++.-.+||++...+|+
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr- 168 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR- 168 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-
Confidence 5567777777777654 11 233355667777777777765322 1223445667777777766
Q ss_pred CCCCc------ccCCCCCccEEEcccCCCc-----ccchhhcCCccCcEEeccCCCCCCc----cChhhhcCCCCCcEEE
Q 005708 118 FGDLP------LIGELSLLEILDLSESDVS-----EIPVSFGRLGHLRLLDLTDCVHLEL----IPRDVLSSLRKLEELY 182 (681)
Q Consensus 118 ~~~l~------~l~~L~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~~~~----~~~~~l~~l~~L~~L~ 182 (681)
+.+-+ .+...+.|+.+.+..|.|. .+-..+..+++|+.|+|.+|.+... +... +..+++|+.|+
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka-L~s~~~L~El~ 247 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA-LSSWPHLRELN 247 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH-hcccchheeec
Confidence 55544 3555567777777766554 2334566677777777777544322 1222 45566677777
Q ss_pred cccCcccccccchhhhhhccchhhhc-CCCCCcEEEEeCCCCCCCC------CCCCCCCccEEEEEecCC
Q 005708 183 MSHSFCHWQFESEEDARSNAKFIELG-ALSRLTSLHIDIPKGKIMP------SDMSFQNLTSFSIKIGDL 245 (681)
Q Consensus 183 l~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~------~~~~l~~L~~L~l~~~~~ 245 (681)
+++|.... .| ..++...+. ..+.|+.|.+.+|.++.-. .....+.|.+|++.++..
T Consensus 248 l~dcll~~--~G-----a~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 248 LGDCLLEN--EG-----AIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccc--cc-----HHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 77665421 11 122333332 3466777777776653211 013356677777766654
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.35 E-value=4.3e-09 Score=109.77 Aligned_cols=176 Identities=23% Similarity=0.240 Sum_probs=111.3
Q ss_pred CCCCCCCccEEEccCCCCccCCCCCC-CCCCcEEEccCCC----------CCCCChHHHhCCCCccEEEecCCCCCCCCc
Q 005708 31 SINTFEDLTGISLMFNDIHEVPDELE-CPKLQALFLQENS----------PLAIPDRFFQGMKDLKVLDLGGIRGFSLPS 99 (681)
Q Consensus 31 ~~~~l~~lr~L~l~~~~~~~l~~~~~-~~~Lr~L~l~~~~----------~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~ 99 (681)
++..+.+||+|.+.++++..+..... ...|+.|..++.- +.++-.+ --.-.|.+-++++|.+..+-.
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns--~~Wn~L~~a~fsyN~L~~mD~ 181 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNS--PVWNKLATASFSYNRLVLMDE 181 (1096)
T ss_pred eeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccc--hhhhhHhhhhcchhhHHhHHH
Confidence 35556677777777777654332221 1344444432211 0011110 012356667777777766666
Q ss_pred cccCCCCCcEEEccCCCCCCCCcccCCCCCccEEEcccCCCcccch-hhcCCccCcEEeccCCCCCCccChhhhcCCCCC
Q 005708 100 SLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKL 178 (681)
Q Consensus 100 ~i~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L 178 (681)
++.-++.|+.|+|++|+ +.+...+..|++|++|||+.|.+..+|. +...+ +|+.|.+++ +.++.+-. +.+|++|
T Consensus 182 SLqll~ale~LnLshNk-~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrn-N~l~tL~g--ie~LksL 256 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNK-FTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRN-NALTTLRG--IENLKSL 256 (1096)
T ss_pred HHHHHHHhhhhccchhh-hhhhHHHHhcccccccccccchhccccccchhhh-hheeeeecc-cHHHhhhh--HHhhhhh
Confidence 77777888888888888 6666688888888888888888887775 23334 388888888 44545544 6788888
Q ss_pred cEEEcccCcccccccchhhhhhccchhhhcCCCCCcEEEEeCCCC
Q 005708 179 EELYMSHSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKG 223 (681)
Q Consensus 179 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 223 (681)
+.|++++|.+ ....-+.-++.+..|+.|++.||-+
T Consensus 257 ~~LDlsyNll----------~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 257 YGLDLSYNLL----------SEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hccchhHhhh----------hcchhhhHHHHHHHHHHHhhcCCcc
Confidence 8888888764 2223455566777788888888765
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=4.3e-08 Score=91.86 Aligned_cols=177 Identities=21% Similarity=0.170 Sum_probs=132.2
Q ss_pred CCCcEEEccCCCCC-CCChHHHhCCCCccEEEecCCCC-CCCCccccCCCCCcEEEccCCCCCCCCc---ccCCCCCccE
Q 005708 58 PKLQALFLQENSPL-AIPDRFFQGMKDLKVLDLGGIRG-FSLPSSLSFLINLRTLSLHDCRRFGDLP---LIGELSLLEI 132 (681)
Q Consensus 58 ~~Lr~L~l~~~~~~-~l~~~~~~~l~~Lr~L~L~~~~~-~~lp~~i~~l~~L~~L~L~~~~~~~~l~---~l~~L~~L~~ 132 (681)
..|+.|++++..++ .-...+++.+.+|+-|++.++++ +.+-..+..-.+|+.|++++|..++... .+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 46899999999887 33445678999999999999998 5667778888999999999999888775 6889999999
Q ss_pred EEcccCCCc--ccchhhcC-CccCcEEeccCCCCC---CccChhhhcCCCCCcEEEcccCcccccccchhhhhhccchhh
Q 005708 133 LDLSESDVS--EIPVSFGR-LGHLRLLDLTDCVHL---ELIPRDVLSSLRKLEELYMSHSFCHWQFESEEDARSNAKFIE 206 (681)
Q Consensus 133 L~l~~~~i~--~lp~~i~~-l~~L~~L~L~~~~~~---~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 206 (681)
|++++|.+. .....+.. -.+|..|+++||..- ..+. ....++++|.+|+++.|... ......+
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~-tL~~rcp~l~~LDLSD~v~l----------~~~~~~~ 333 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLS-TLVRRCPNLVHLDLSDSVML----------KNDCFQE 333 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHH-HHHHhCCceeeecccccccc----------CchHHHH
Confidence 999999765 22222222 248889999997532 1222 22468899999999988642 2356778
Q ss_pred hcCCCCCcEEEEeCCCCC---CCCCCCCCCCccEEEEEecCC
Q 005708 207 LGALSRLTSLHIDIPKGK---IMPSDMSFQNLTSFSIKIGDL 245 (681)
Q Consensus 207 l~~l~~L~~L~l~~~~~~---~~~~~~~l~~L~~L~l~~~~~ 245 (681)
+.+++.|++|.++.+..- .+-.....+.|.+|++.+|-.
T Consensus 334 ~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 334 FFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred HHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 899999999999887652 111126778999999988754
No 45
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.27 E-value=9e-07 Score=85.28 Aligned_cols=90 Identities=21% Similarity=0.076 Sum_probs=44.0
Q ss_pred CCccCcEEeccCCCCCCccCh----hhhcCCCCCcEEEcccCcccccccchhhhhhccchhhhcCCCCCcEEEEeCCCCC
Q 005708 149 RLGHLRLLDLTDCVHLELIPR----DVLSSLRKLEELYMSHSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKGK 224 (681)
Q Consensus 149 ~l~~L~~L~L~~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 224 (681)
.-++||++....|. +..-+. ..+...+.|+.+.+..|.+.. .| ......++..+++|+.|++..|-++
T Consensus 155 ~~~~Lrv~i~~rNr-len~ga~~~A~~~~~~~~leevr~~qN~I~~--eG-----~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 155 SKPKLRVFICGRNR-LENGGATALAEAFQSHPTLEEVRLSQNGIRP--EG-----VTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred CCcceEEEEeeccc-cccccHHHHHHHHHhccccceEEEecccccC--ch-----hHHHHHHHHhCCcceeeecccchhh
Confidence 34456666555532 222221 114445566666666554321 11 1244556666777777777666542
Q ss_pred CCCCC------CCCCCccEEEEEecCCc
Q 005708 225 IMPSD------MSFQNLTSFSIKIGDLE 246 (681)
Q Consensus 225 ~~~~~------~~l~~L~~L~l~~~~~~ 246 (681)
.-... ..+++|+.+++.+|...
T Consensus 227 ~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 227 LEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred hHHHHHHHHHhcccchheeecccccccc
Confidence 21100 33456666666665543
No 46
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.27 E-value=2.8e-06 Score=86.08 Aligned_cols=14 Identities=21% Similarity=0.662 Sum_probs=8.5
Q ss_pred ccccEeEEcccccc
Q 005708 539 VRLESLEVSSCPTL 552 (681)
Q Consensus 539 ~~L~~L~i~~C~~L 552 (681)
++|++|.|.+|..+
T Consensus 156 sSLk~L~Is~c~~i 169 (426)
T PRK15386 156 PSLKTLSLTGCSNI 169 (426)
T ss_pred CcccEEEecCCCcc
Confidence 45666666666643
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.26 E-value=7.8e-08 Score=101.59 Aligned_cols=179 Identities=26% Similarity=0.282 Sum_probs=130.7
Q ss_pred CCCCCCCCccEEEccCCCCccCCC-CCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCc
Q 005708 30 PSINTFEDLTGISLMFNDIHEVPD-ELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLR 108 (681)
Q Consensus 30 ~~~~~l~~lr~L~l~~~~~~~l~~-~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~ 108 (681)
..+..+.++..+++.+|.+..+.. ...+++|++|++++|.|.++.. +..++.|+.|++++|.+..+.. +..+..|+
T Consensus 89 ~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~ 165 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDISG-LESLKSLK 165 (414)
T ss_pred cccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhccC-Cccchhhh
Confidence 347778899999999999998888 5589999999999999998876 6788889999999999977764 45689999
Q ss_pred EEEccCCCCCCCCcc--cCCCCCccEEEcccCCCcccchhhcCCccCcEEeccCCCCCCccChhhhcCCCC--CcEEEcc
Q 005708 109 TLSLHDCRRFGDLPL--IGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRK--LEELYMS 184 (681)
Q Consensus 109 ~L~L~~~~~~~~l~~--l~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~--L~~L~l~ 184 (681)
.+++++|. +..++. ...+.+++.+++.++.+..+. .+..+..+..+++..+. +..+.. +..+.. |+.+.+.
T Consensus 166 ~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~-i~~~~~--l~~~~~~~L~~l~l~ 240 (414)
T KOG0531|consen 166 LLDLSYNR-IVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNK-ISKLEG--LNELVMLHLRELYLS 240 (414)
T ss_pred cccCCcch-hhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhccccc-ceeccC--cccchhHHHHHHhcc
Confidence 99999998 777775 689999999999998887552 33444455555666633 222221 223333 7777777
Q ss_pred cCcccccccchhhhhhccchhhhcCCCCCcEEEEeCCCCCCCCC
Q 005708 185 HSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKGKIMPS 228 (681)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 228 (681)
++.+. ..+..+..+..+..|++..+.+.....
T Consensus 241 ~n~i~------------~~~~~~~~~~~l~~l~~~~n~~~~~~~ 272 (414)
T KOG0531|consen 241 GNRIS------------RSPEGLENLKNLPVLDLSSNRISNLEG 272 (414)
T ss_pred cCccc------------cccccccccccccccchhhcccccccc
Confidence 76531 122566777777888887777654443
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=1.2e-07 Score=88.90 Aligned_cols=170 Identities=19% Similarity=0.130 Sum_probs=116.3
Q ss_pred HHHHHHhccceeecccccCcccccccccccccCCCcEEEEEecCCceEeeeccccccccccCccceeeeccccccccccc
Q 005708 283 WIKNLLLRSEILALAEVNDLENMVSDLANDGFNELMFLVIVRCNEMKCLVNSLERTRRVTLHKLEWLAIFLNQNLVEICH 362 (681)
Q Consensus 283 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 362 (681)
++...+..|+.|.+++......+...+.. -.+|+.|+++.|.+++...... ....+..|..|++++|.-......
T Consensus 204 ~iLs~C~kLk~lSlEg~~LdD~I~~~iAk--N~~L~~lnlsm~sG~t~n~~~l---l~~scs~L~~LNlsWc~l~~~~Vt 278 (419)
T KOG2120|consen 204 GILSQCSKLKNLSLEGLRLDDPIVNTIAK--NSNLVRLNLSMCSGFTENALQL---LLSSCSRLDELNLSWCFLFTEKVT 278 (419)
T ss_pred HHHHHHHhhhhccccccccCcHHHHHHhc--cccceeeccccccccchhHHHH---HHHhhhhHhhcCchHhhccchhhh
Confidence 45555788899998877655444444433 5789999999998876532211 456788999999999965443311
Q ss_pred CcCCCCcCCCccEEEEeeCCCCCcc-ccchHHhhcCCCcEEEEeeccCcceeecccccccccccccccCccCEEeeccCC
Q 005708 363 GQLPAGCLSNVKRLDVGDCGSMLKI-LPSHLVQSFQNLQRLRVGRCELLESVFEIERVNIAKEETELFSSLEKLTLIDLP 441 (681)
Q Consensus 363 ~~~~~~~~~~L~~L~l~~c~~l~~~-~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 441 (681)
......-++|+.|++++|..--.. --..+...+|+|.+|++++|..++.- ....+..|+.|+.|.++.|-
T Consensus 279 -v~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~--------~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 279 -VAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND--------CFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred -HHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch--------HHHHHHhcchheeeehhhhc
Confidence 111123378999999998533222 12345688999999999999888742 22345678999999999986
Q ss_pred CcccccCCCCCcccccccceeeeccCC
Q 005708 442 RMTDIWKGDTQFVSLHNLKKVRVQDCD 468 (681)
Q Consensus 442 ~L~~~~~~~~~~~~l~~L~~L~i~~c~ 468 (681)
.+ +|.....+.+.|+|.+|++.+|-
T Consensus 350 ~i--~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 350 DI--IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred CC--ChHHeeeeccCcceEEEEecccc
Confidence 54 23334445677899999998874
No 49
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.18 E-value=9.3e-07 Score=97.39 Aligned_cols=137 Identities=21% Similarity=0.199 Sum_probs=98.1
Q ss_pred CCCccEEEecCCCC--CCCCcccc-CCCCCcEEEccCCCCCCC-Cc-ccCCCCCccEEEcccCCCcccchhhcCCccCcE
Q 005708 81 MKDLKVLDLGGIRG--FSLPSSLS-FLINLRTLSLHDCRRFGD-LP-LIGELSLLEILDLSESDVSEIPVSFGRLGHLRL 155 (681)
Q Consensus 81 l~~Lr~L~L~~~~~--~~lp~~i~-~l~~L~~L~L~~~~~~~~-l~-~l~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~ 155 (681)
-.+|++|+++|... ...|..+| .++.|+.|.+.+-....+ +. ...++++|+.||+++++++.+ .++++|++|+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 36899999998765 44555666 679999999998763332 23 677899999999999999988 78999999999
Q ss_pred EeccCCCCCCccChhhhcCCCCCcEEEcccCcccccccchhhhhhccchhhhcCCCCCcEEEEeCCCC
Q 005708 156 LDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKG 223 (681)
Q Consensus 156 L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 223 (681)
|.+.+-.+...-.-..+.+|++|+.||++......... ......+.-..+|+||.|+.+++.+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~-----ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTK-----IIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchH-----HHHHHHHhcccCccccEEecCCcch
Confidence 99988544332222227889999999998764322110 1222333445588888888887654
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.09 E-value=3.1e-06 Score=56.83 Aligned_cols=33 Identities=42% Similarity=0.455 Sum_probs=13.4
Q ss_pred ccEEEecCCCCCCCCccccCCCCCcEEEccCCC
Q 005708 84 LKVLDLGGIRGFSLPSSLSFLINLRTLSLHDCR 116 (681)
Q Consensus 84 Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~ 116 (681)
|++|++++|++..+|..+++|++|++|++++|+
T Consensus 3 L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 3 LEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp -SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred ceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 444444444444444334444444444444443
No 51
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.06 E-value=8.8e-06 Score=82.52 Aligned_cols=140 Identities=14% Similarity=0.225 Sum_probs=90.9
Q ss_pred ccccCccCEEeeccCCCcccccCCCCCcccccccceeeeccCCccccccccccccceeeceeecccc-cceeEEEeccCC
Q 005708 426 TELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVQDCDELRQVFPTNLGKKAAVEEMVPYRK-RRDHIHIHATTS 504 (681)
Q Consensus 426 ~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~l~~~~~L~~L~l~~~-~l~~l~~~~~~~ 504 (681)
+..+.+++.|.+++| .++.+|. .| ++|++|.|++|.+++.+ |..+ ..+|+.|++++| ++..+ |
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~--LP----~sLtsL~Lsnc~nLtsL-P~~L--P~nLe~L~Ls~Cs~L~sL----P-- 111 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV--LP----NELTEITIENCNNLTTL-PGSI--PEGLEKLTVCHCPEISGL----P-- 111 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC--CC----CCCcEEEccCCCCcccC-Cchh--hhhhhheEccCccccccc----c--
Confidence 445689999999999 7888772 33 57999999999999776 5444 357999999998 77655 3
Q ss_pred CCCCCCCCCCccEEEEecCCCcceecchhhHhhhccccEeEEcccccccceeccccccccccCCCCcceeccccceeecc
Q 005708 505 TSSPTPSLGNLVSITIRGCGQLRQLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDDGGVGLQGASTEKITFPSLFIIQLC 584 (681)
Q Consensus 505 ~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 584 (681)
++|+.|++.+ .....+. .-.++|++|.+.++...... ..+ ...-++|++|.+.
T Consensus 112 --------~sLe~L~L~~-n~~~~L~-----~LPssLk~L~I~~~n~~~~~--------~lp-----~~LPsSLk~L~Is 164 (426)
T PRK15386 112 --------ESVRSLEIKG-SATDSIK-----NVPNGLTSLSINSYNPENQA--------RID-----NLISPSLKTLSLT 164 (426)
T ss_pred --------cccceEEeCC-CCCcccc-----cCcchHhheecccccccccc--------ccc-----cccCCcccEEEec
Confidence 4577787753 3332220 12246778887543211110 000 0012689999999
Q ss_pred cCCcccccccCCcccccccccccEEEeccCC
Q 005708 585 HLDSLACFFSAGSHATIEFLALAALLIIDCP 615 (681)
Q Consensus 585 ~c~~L~~~~~~~~~~~~~~~sL~~L~i~~C~ 615 (681)
+|..+. +| ..++. +|+.|.+..+.
T Consensus 165 ~c~~i~-LP-~~LP~-----SLk~L~ls~n~ 188 (426)
T PRK15386 165 GCSNII-LP-EKLPE-----SLQSITLHIEQ 188 (426)
T ss_pred CCCccc-Cc-ccccc-----cCcEEEecccc
Confidence 998663 33 44553 89999987653
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.05 E-value=2.7e-06 Score=93.78 Aligned_cols=129 Identities=19% Similarity=0.197 Sum_probs=97.4
Q ss_pred CCCcEEEccCCCCC--CCChHHHhCCCCccEEEecCCCC--CCCCccccCCCCCcEEEccCCCCCCCCcccCCCCCccEE
Q 005708 58 PKLQALFLQENSPL--AIPDRFFQGMKDLKVLDLGGIRG--FSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEIL 133 (681)
Q Consensus 58 ~~Lr~L~l~~~~~~--~l~~~~~~~l~~Lr~L~L~~~~~--~~lp~~i~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L 133 (681)
.+|+.|+++|.... ..+..+...+|.||.|.+.+-.+ +++-.-..++++|+.||+++++ ++.+..+++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHHhccccHHHH
Confidence 67888888887644 55666777889999999998776 3444556688999999999998 8888899999999999
Q ss_pred EcccCCCccc--chhhcCCccCcEEeccCCCCCCccCh------hhhcCCCCCcEEEcccCcc
Q 005708 134 DLSESDVSEI--PVSFGRLGHLRLLDLTDCVHLELIPR------DVLSSLRKLEELYMSHSFC 188 (681)
Q Consensus 134 ~l~~~~i~~l--p~~i~~l~~L~~L~L~~~~~~~~~~~------~~l~~l~~L~~L~l~~~~~ 188 (681)
.+.+-.+..- -.++.+|++|++||+|.-... ..+. +.-..|++|+.||.+++..
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcch
Confidence 9988666632 246778999999999884432 2221 1123588999999988754
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.92 E-value=2e-07 Score=97.70 Aligned_cols=126 Identities=25% Similarity=0.206 Sum_probs=102.5
Q ss_pred CCCCccEEEccCCCCccCCCCC-CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCcc-ccCCCCCcEEE
Q 005708 34 TFEDLTGISLMFNDIHEVPDEL-ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSS-LSFLINLRTLS 111 (681)
Q Consensus 34 ~l~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~-i~~l~~L~~L~ 111 (681)
.+..|...++++|.+..+...+ -++.|+.|+|++|.+.+.. .+.++++|++|||++|.+..+|.- ...++ |+.|.
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~ 238 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLN 238 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeee
Confidence 4567888899999988776666 5689999999999998877 378999999999999999888753 22444 99999
Q ss_pred ccCCCCCCCCcccCCCCCccEEEcccCCCcccc--hhhcCCccCcEEeccCCCC
Q 005708 112 LHDCRRFGDLPLIGELSLLEILDLSESDVSEIP--VSFGRLGHLRLLDLTDCVH 163 (681)
Q Consensus 112 L~~~~~~~~l~~l~~L~~L~~L~l~~~~i~~lp--~~i~~l~~L~~L~L~~~~~ 163 (681)
+++|. ++.+-.+.+|.+|+.||++.|-+...- .-++.|..|+.|.|.||+.
T Consensus 239 lrnN~-l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 239 LRNNA-LTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ecccH-HHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 99998 888888999999999999998776331 2356778899999999753
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.91 E-value=2e-05 Score=70.33 Aligned_cols=78 Identities=24% Similarity=0.218 Sum_probs=38.2
Q ss_pred cEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCc--cccCCCCCcEEEccCCC
Q 005708 39 TGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPS--SLSFLINLRTLSLHDCR 116 (681)
Q Consensus 39 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~--~i~~l~~L~~L~L~~~~ 116 (681)
-.++++.|.+..++....++.|.+|.+++|.|+.+.+.+-..+++|..|.+.+|.+.++.+ .+..|+.|++|.+-+|+
T Consensus 45 d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 45 DAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred ceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc
Confidence 3455555555544444455555555555555555554444444555555555555533321 13344455555555544
No 55
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.88 E-value=2e-06 Score=93.67 Aligned_cols=120 Identities=16% Similarity=0.108 Sum_probs=78.2
Q ss_pred HhccceeecccccCcccc--cccccccccCCCcEEEEEec-CCceEeeeccccccccccCccceeeecccccccccccCc
Q 005708 288 LLRSEILALAEVNDLENM--VSDLANDGFNELMFLVIVRC-NEMKCLVNSLERTRRVTLHKLEWLAIFLNQNLVEICHGQ 364 (681)
Q Consensus 288 ~~~L~~L~l~~~~~~~~~--~~~l~~~~~~~L~~L~l~~~-~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 364 (681)
+++++.+.+.++..+.+. .+... .++.|+.|++.+| ......+ .........+++|+.|++.++..+.+.....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALAL--KCPNLEELDLSGCCLLITLSP-LLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHh--hCchhheecccCcccccccch-hHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 678888888888776653 23332 3788999998873 2222111 1111134456888888888887554432211
Q ss_pred CCCCcCCCccEEEEeeCCCCCccccchHHhhcCCCcEEEEeeccCcc
Q 005708 365 LPAGCLSNVKRLDVGDCGSMLKILPSHLVQSFQNLQRLRVGRCELLE 411 (681)
Q Consensus 365 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 411 (681)
+ ...+++|+.|.+.+|..+++..-......+++|++|+++.|..+.
T Consensus 264 l-~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~ 309 (482)
T KOG1947|consen 264 L-ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT 309 (482)
T ss_pred H-HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch
Confidence 1 124788999998888887766555667788999999999988873
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=1.1e-05 Score=76.22 Aligned_cols=102 Identities=25% Similarity=0.199 Sum_probs=62.6
Q ss_pred CcEEEccCCCCCCCC--hHHHhCCCCccEEEecCCCCCC---CCccccCCCCCcEEEccCCCCCCCCccc-CCCCCccEE
Q 005708 60 LQALFLQENSPLAIP--DRFFQGMKDLKVLDLGGIRGFS---LPSSLSFLINLRTLSLHDCRRFGDLPLI-GELSLLEIL 133 (681)
Q Consensus 60 Lr~L~l~~~~~~~l~--~~~~~~l~~Lr~L~L~~~~~~~---lp~~i~~l~~L~~L~L~~~~~~~~l~~l-~~L~~L~~L 133 (681)
++.|.+.++.+...- ..+-..+++++.|||.+|.+.. +...+.++++|++|+++.|+....|..+ ..+.+|+.|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 334555555554321 2223456777777777777743 3334557777888888777744444433 466677888
Q ss_pred EcccCCCc--ccchhhcCCccCcEEeccCC
Q 005708 134 DLSESDVS--EIPVSFGRLGHLRLLDLTDC 161 (681)
Q Consensus 134 ~l~~~~i~--~lp~~i~~l~~L~~L~L~~~ 161 (681)
-+.++.+. ........++.++.|+++.|
T Consensus 127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred EEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 77777654 44455667777777777764
No 57
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.85 E-value=6.4e-07 Score=97.54 Aligned_cols=121 Identities=21% Similarity=0.140 Sum_probs=72.9
Q ss_pred cCCCcEEEEEecCCceEeeeccccccccccCccceeeeccc-ccccccccC-cCCCCcCCCccEEEEeeCCCCCccccch
Q 005708 314 FNELMFLVIVRCNEMKCLVNSLERTRRVTLHKLEWLAIFLN-QNLVEICHG-QLPAGCLSNVKRLDVGDCGSMLKILPSH 391 (681)
Q Consensus 314 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~-~~l~~~~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 391 (681)
++.|+.+.+.+|..+..... .......+.|+.|++++| ......... ......+++|+.|++..|..+++..-..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSL---DALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred CchhhHhhhcccccCChhhH---HHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 68888888888876654210 004556788888888873 211111100 0112345778888888887776664444
Q ss_pred HHhhcCCCcEEEEeeccCcceeecccccccccccccccCccCEEeeccCCCcc
Q 005708 392 LVQSFQNLQRLRVGRCELLESVFEIERVNIAKEETELFSSLEKLTLIDLPRMT 444 (681)
Q Consensus 392 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~ 444 (681)
....+++|+.|.+..|..+++-.- ......+++|++|.++.|..+.
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl-------~~i~~~~~~L~~L~l~~c~~~~ 309 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGL-------VSIAERCPSLRELDLSGCHGLT 309 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHH-------HHHHHhcCcccEEeeecCccch
Confidence 455578888888877876432111 1123456778888888777653
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.85 E-value=2e-05 Score=52.92 Aligned_cols=33 Identities=33% Similarity=0.577 Sum_probs=17.1
Q ss_pred CccEEEcccCCCcccchhhcCCccCcEEeccCC
Q 005708 129 LLEILDLSESDVSEIPVSFGRLGHLRLLDLTDC 161 (681)
Q Consensus 129 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~ 161 (681)
+|++|++++|+++.+|..+++|++|++|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 455555555555555555555555555555553
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.73 E-value=4.9e-05 Score=67.92 Aligned_cols=119 Identities=24% Similarity=0.244 Sum_probs=83.9
Q ss_pred EEEccCCCCccCCCCC-CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCcccc-CCCCCcEEEccCCCC
Q 005708 40 GISLMFNDIHEVPDEL-ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLS-FLINLRTLSLHDCRR 117 (681)
Q Consensus 40 ~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~-~l~~L~~L~L~~~~~ 117 (681)
.+++.+..+..+.... -......+++++|.+..++. |..++.|..|.+.+|.|..+-..+. .+++|..|.+.+|+
T Consensus 23 e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs- 99 (233)
T KOG1644|consen 23 ELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS- 99 (233)
T ss_pred ccccccccccchhhccccccccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcc-
Confidence 4444444444333211 34567788999999888776 7899999999999999988866665 45679999999887
Q ss_pred CCCC---cccCCCCCccEEEcccCCCcccch----hhcCCccCcEEeccCC
Q 005708 118 FGDL---PLIGELSLLEILDLSESDVSEIPV----SFGRLGHLRLLDLTDC 161 (681)
Q Consensus 118 ~~~l---~~l~~L~~L~~L~l~~~~i~~lp~----~i~~l~~L~~L~L~~~ 161 (681)
+..+ ..+..++.|++|.+-+|.++.-+. -+.++++|+.||..+.
T Consensus 100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 100 IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 5444 367788888888888887764432 2556667777766653
No 60
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.73 E-value=2.1e-06 Score=71.31 Aligned_cols=85 Identities=26% Similarity=0.342 Sum_probs=39.1
Q ss_pred CCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEEEccCCCCCCCCc-ccCCCCCccEEEcc
Q 005708 58 PKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLS 136 (681)
Q Consensus 58 ~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~-~l~~L~~L~~L~l~ 136 (681)
..|...++++|.+.++|+.+-.+++-+..|++.+|.+..+|..+..++.||.|+++.|+ +...| .+..|.+|-+|+..
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHhcCC
Confidence 34444455555555555544444444555555555555555544444555555554444 33232 33334444444444
Q ss_pred cCCCccc
Q 005708 137 ESDVSEI 143 (681)
Q Consensus 137 ~~~i~~l 143 (681)
++.+..+
T Consensus 132 ~na~~ei 138 (177)
T KOG4579|consen 132 ENARAEI 138 (177)
T ss_pred CCccccC
Confidence 4433333
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=1.3e-05 Score=75.53 Aligned_cols=85 Identities=25% Similarity=0.273 Sum_probs=48.6
Q ss_pred CCCccEEEcccCCCc---ccchhhcCCccCcEEeccCCCCCCccChhhh-cCCCCCcEEEcccCcccccccchhhhhhcc
Q 005708 127 LSLLEILDLSESDVS---EIPVSFGRLGHLRLLDLTDCVHLELIPRDVL-SSLRKLEELYMSHSFCHWQFESEEDARSNA 202 (681)
Q Consensus 127 L~~L~~L~l~~~~i~---~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 202 (681)
.+.++.||+.+|.|+ ++...+.+|+.|+.|+++.|.....+.. + ..+.+|+.|.+.++...|. .
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~--lp~p~~nl~~lVLNgT~L~w~----------~ 137 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS--LPLPLKNLRVLVLNGTGLSWT----------Q 137 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc--CcccccceEEEEEcCCCCChh----------h
Confidence 455666666666665 3444455677777777776543322221 1 2456777777766654433 2
Q ss_pred chhhhcCCCCCcEEEEeCCCC
Q 005708 203 KFIELGALSRLTSLHIDIPKG 223 (681)
Q Consensus 203 ~~~~l~~l~~L~~L~l~~~~~ 223 (681)
.-..+..++.+++|+++.|..
T Consensus 138 ~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 138 STSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred hhhhhhcchhhhhhhhccchh
Confidence 234456677777777776643
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.67 E-value=6.4e-06 Score=68.55 Aligned_cols=111 Identities=21% Similarity=0.226 Sum_probs=76.3
Q ss_pred CCCcEEEccCCCCCCCChHH--HhCCCCccEEEecCCCCCCCCcccc-CCCCCcEEEccCCCCCCCCc-ccCCCCCccEE
Q 005708 58 PKLQALFLQENSPLAIPDRF--FQGMKDLKVLDLGGIRGFSLPSSLS-FLINLRTLSLHDCRRFGDLP-LIGELSLLEIL 133 (681)
Q Consensus 58 ~~Lr~L~l~~~~~~~l~~~~--~~~l~~Lr~L~L~~~~~~~lp~~i~-~l~~L~~L~L~~~~~~~~l~-~l~~L~~L~~L 133 (681)
..+..++++.|.+-.+++.. ..+..+|...+|++|.+.++|..+. ..+.+..|++.+|. +.++| .+..++.|+.|
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSL 105 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhc
Confidence 34455666666665444332 3566677777888888888877765 34477788888777 77777 77777888888
Q ss_pred EcccCCCcccchhhcCCccCcEEeccCCCCCCccChh
Q 005708 134 DLSESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPRD 170 (681)
Q Consensus 134 ~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~ 170 (681)
+++.|.+...|+.|..|.+|-.|+..+ +....+|-+
T Consensus 106 Nl~~N~l~~~p~vi~~L~~l~~Lds~~-na~~eid~d 141 (177)
T KOG4579|consen 106 NLRFNPLNAEPRVIAPLIKLDMLDSPE-NARAEIDVD 141 (177)
T ss_pred ccccCccccchHHHHHHHhHHHhcCCC-CccccCcHH
Confidence 888887777777777777777777766 334455543
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=2.5e-05 Score=73.07 Aligned_cols=84 Identities=25% Similarity=0.192 Sum_probs=48.9
Q ss_pred CCCccEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCc--cccCCCCCcEEEc
Q 005708 35 FEDLTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPS--SLSFLINLRTLSL 112 (681)
Q Consensus 35 l~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~--~i~~l~~L~~L~L 112 (681)
+.+++.|++.++.+++|.-...++.|++|.|+-|.|+.+.. |.+|++|+.|.|..|.|..+-. -+.++++||.|-|
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 45566667777766665444466666666666666666554 5566666666666666544422 2345566666666
Q ss_pred cCCCCCCC
Q 005708 113 HDCRRFGD 120 (681)
Q Consensus 113 ~~~~~~~~ 120 (681)
..|+..+.
T Consensus 96 ~ENPCc~~ 103 (388)
T KOG2123|consen 96 DENPCCGE 103 (388)
T ss_pred ccCCcccc
Confidence 55554433
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.97 E-value=0.00031 Score=65.77 Aligned_cols=83 Identities=27% Similarity=0.265 Sum_probs=38.7
Q ss_pred CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCC--C-CCCCccccCCCCCcEEEccCCCCCCCC---cccCCCCC
Q 005708 56 ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIR--G-FSLPSSLSFLINLRTLSLHDCRRFGDL---PLIGELSL 129 (681)
Q Consensus 56 ~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~--~-~~lp~~i~~l~~L~~L~L~~~~~~~~l---~~l~~L~~ 129 (681)
.+..|+.|.+.+..++.+.. |-.+++|+.|.++.|+ + ..++.....+++|++|++++|+ ++.+ +.+..+.+
T Consensus 41 ~~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELEN 117 (260)
T ss_pred cccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhhhhcc
Confidence 44445555555544444333 3455555555555552 2 2333333344555555555555 3322 23444444
Q ss_pred ccEEEcccCCCc
Q 005708 130 LEILDLSESDVS 141 (681)
Q Consensus 130 L~~L~l~~~~i~ 141 (681)
|..|++..|..+
T Consensus 118 L~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 118 LKSLDLFNCSVT 129 (260)
T ss_pred hhhhhcccCCcc
Confidence 555555544433
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.66 E-value=0.00098 Score=62.51 Aligned_cols=104 Identities=27% Similarity=0.330 Sum_probs=74.2
Q ss_pred CCCCCCccEEEccCCCCccCCCCCCCCCCcEEEccCCC--CC-CCChHHHhCCCCccEEEecCCCCCCC--CccccCCCC
Q 005708 32 INTFEDLTGISLMFNDIHEVPDELECPKLQALFLQENS--PL-AIPDRFFQGMKDLKVLDLGGIRGFSL--PSSLSFLIN 106 (681)
Q Consensus 32 ~~~l~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~--~~-~l~~~~~~~l~~Lr~L~L~~~~~~~l--p~~i~~l~~ 106 (681)
...+..+..+++.+..++.+.....+++|+.|.++.|+ +. .++.- ...+++|++|++++|++..+ -..+..+.+
T Consensus 39 ~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred cccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccccccccchhhhhcc
Confidence 34556778888888888888777799999999999994 43 34332 35679999999999998642 123567888
Q ss_pred CcEEEccCCCCCCCCc-----ccCCCCCccEEEccc
Q 005708 107 LRTLSLHDCRRFGDLP-----LIGELSLLEILDLSE 137 (681)
Q Consensus 107 L~~L~L~~~~~~~~l~-----~l~~L~~L~~L~l~~ 137 (681)
|..|++..|. ...+- .+.-+++|.+||-..
T Consensus 118 L~~Ldl~n~~-~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 118 LKSLDLFNCS-VTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhhhcccCC-ccccccHHHHHHHHhhhhccccccc
Confidence 9999999998 43332 344555555555444
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.64 E-value=0.00012 Score=68.66 Aligned_cols=78 Identities=23% Similarity=0.195 Sum_probs=40.7
Q ss_pred CCCCcEEEccCCCCCCCCcccCCCCCccEEEcccCCCcccch--hhcCCccCcEEeccCCCCCCccCh----hhhcCCCC
Q 005708 104 LINLRTLSLHDCRRFGDLPLIGELSLLEILDLSESDVSEIPV--SFGRLGHLRLLDLTDCVHLELIPR----DVLSSLRK 177 (681)
Q Consensus 104 l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~L~~~~~~~~~~~----~~l~~l~~ 177 (681)
++.|++|.|+-|. ++.+..+..+++|++|+|..|.|..+-+ -+.++++|+.|.|..|+..+..+. .++..|++
T Consensus 40 Mp~lEVLsLSvNk-IssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPn 118 (388)
T KOG2123|consen 40 MPLLEVLSLSVNK-ISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPN 118 (388)
T ss_pred cccceeEEeeccc-cccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHccc
Confidence 3334444444443 4444444445555555555555554422 345666777777766665554443 23556666
Q ss_pred CcEEE
Q 005708 178 LEELY 182 (681)
Q Consensus 178 L~~L~ 182 (681)
|+.|+
T Consensus 119 LkKLD 123 (388)
T KOG2123|consen 119 LKKLD 123 (388)
T ss_pred chhcc
Confidence 66666
No 67
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.56 E-value=0.012 Score=55.39 Aligned_cols=86 Identities=19% Similarity=0.220 Sum_probs=50.7
Q ss_pred cCCCCCcEEEccCCCCCCCC----c-ccCCCCCccEEEcccCCCc----ccc-------hhhcCCccCcEEeccCCCCCC
Q 005708 102 SFLINLRTLSLHDCRRFGDL----P-LIGELSLLEILDLSESDVS----EIP-------VSFGRLGHLRLLDLTDCVHLE 165 (681)
Q Consensus 102 ~~l~~L~~L~L~~~~~~~~l----~-~l~~L~~L~~L~l~~~~i~----~lp-------~~i~~l~~L~~L~L~~~~~~~ 165 (681)
..+..+..++|+||..-+.. . .+.+-.+|++.+++.-... ++| +.+-++++|+..+|+.|.+-.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 34667777888887732222 1 4556667777777653222 233 234567777777777765544
Q ss_pred ccCh---hhhcCCCCCcEEEcccCc
Q 005708 166 LIPR---DVLSSLRKLEELYMSHSF 187 (681)
Q Consensus 166 ~~~~---~~l~~l~~L~~L~l~~~~ 187 (681)
..|+ +.+++-+.|.+|.+++|-
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCC
Confidence 4443 224566677777776664
No 68
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.40 E-value=0.00022 Score=63.92 Aligned_cols=44 Identities=18% Similarity=0.437 Sum_probs=20.8
Q ss_pred CCCCccEEEEecCCCcceecchhhHhhhccccEeEEcccccccc
Q 005708 511 SLGNLVSITIRGCGQLRQLFTTSMVKSLVRLESLEVSSCPTLQE 554 (681)
Q Consensus 511 ~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~L~~ 554 (681)
.+++++.|.+.+|..+.+.--..+.+-.++||.|+|++|+.+++
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence 45555555666665555432222223334445555555544443
No 69
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.38 E-value=0.0053 Score=57.74 Aligned_cols=19 Identities=16% Similarity=-0.045 Sum_probs=10.1
Q ss_pred hhhcCCCCCcEEEEeCCCC
Q 005708 205 IELGALSRLTSLHIDIPKG 223 (681)
Q Consensus 205 ~~l~~l~~L~~L~l~~~~~ 223 (681)
..+..+.+|+.|++..|.+
T Consensus 208 ~gl~y~~~LevLDlqDNtf 226 (388)
T COG5238 208 LGLFYSHSLEVLDLQDNTF 226 (388)
T ss_pred HHHHHhCcceeeeccccch
Confidence 3344555566666655544
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.37 E-value=0.011 Score=50.90 Aligned_cols=115 Identities=17% Similarity=0.329 Sum_probs=43.7
Q ss_pred CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCc-cccCCCCCcEEEccCCCCCCCCc--ccCCCCCccE
Q 005708 56 ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPS-SLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEI 132 (681)
Q Consensus 56 ~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~~l~--~l~~L~~L~~ 132 (681)
.+++|+.+.+.. .+..++...|..+++|+.+.+..+ +..++. .+.++..|+.+.+.. . +..++ .+..+++|+.
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~-~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-N-LKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-T-T-EE-TTTTTT-TTECE
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-c-ccccccccccccccccc
Confidence 445566666553 345555555666666666666553 444332 345555566666643 2 33333 4555666666
Q ss_pred EEcccCCCcccch-hhcCCccCcEEeccCCCCCCccChhhhcCCCCC
Q 005708 133 LDLSESDVSEIPV-SFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKL 178 (681)
Q Consensus 133 L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L 178 (681)
+++..+ +..++. .+.+. +|+.+.+.. ....++...+.++.+|
T Consensus 86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 86 IDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred cccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence 666543 444433 34444 555555543 2233444434444443
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.90 E-value=0.0037 Score=34.77 Aligned_cols=21 Identities=48% Similarity=0.716 Sum_probs=14.0
Q ss_pred CccEEEcccCCCcccchhhcC
Q 005708 129 LLEILDLSESDVSEIPVSFGR 149 (681)
Q Consensus 129 ~L~~L~l~~~~i~~lp~~i~~ 149 (681)
+|++||+++|+++.+|.+|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 466777777777777766554
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.90 E-value=0.025 Score=48.68 Aligned_cols=116 Identities=16% Similarity=0.306 Sum_probs=66.4
Q ss_pred CCCCCCCccEEEccCCCCccCCCCC--CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCC-ccccCCCCC
Q 005708 31 SINTFEDLTGISLMFNDIHEVPDEL--ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLP-SSLSFLINL 107 (681)
Q Consensus 31 ~~~~l~~lr~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L 107 (681)
.+....+++.+.+.. .+..++... .+++|+.+.+..+ +..++...|..++.|+.+.+.. .+..++ ..+..+.+|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 356667888888874 577776665 7789999999775 8888888899998999999976 554443 456779999
Q ss_pred cEEEccCCCCCCCCc--ccCCCCCccEEEcccCCCcccch-hhcCCccC
Q 005708 108 RTLSLHDCRRFGDLP--LIGELSLLEILDLSESDVSEIPV-SFGRLGHL 153 (681)
Q Consensus 108 ~~L~L~~~~~~~~l~--~l~~L~~L~~L~l~~~~i~~lp~-~i~~l~~L 153 (681)
+.+.+..+ +..++ .+.+. +|+.+.+.. .+..++. .|.++++|
T Consensus 84 ~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN--ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT---BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccCcc--ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 99999754 55565 77787 999998876 4555543 45555555
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.14 E-value=0.0065 Score=33.76 Aligned_cols=19 Identities=53% Similarity=0.630 Sum_probs=10.3
Q ss_pred ccEEEecCCCCCCCCcccc
Q 005708 84 LKVLDLGGIRGFSLPSSLS 102 (681)
Q Consensus 84 Lr~L~L~~~~~~~lp~~i~ 102 (681)
|++|++++|++..+|.+|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 5555555555555555443
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.87 E-value=0.0057 Score=55.13 Aligned_cols=71 Identities=15% Similarity=0.232 Sum_probs=47.8
Q ss_pred cccccCccceeeecccccccccccCcCCCCcCCCccEEEEeeCCCCCccccchHHhhcCCCcEEEEeeccCcc
Q 005708 339 RRVTLHKLEWLAIFLNQNLVEICHGQLPAGCLSNVKRLDVGDCGSMLKILPSHLVQSFQNLQRLRVGRCELLE 411 (681)
Q Consensus 339 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 411 (681)
.+..+++++.|.+.+|..+.+++...+.. ..|+|+.|+|++|+.+++- ....+..+++|+.|.+.+.+.+.
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~~-~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLGG-LAPSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhcc-cccchheeeccCCCeechh-HHHHHHHhhhhHHHHhcCchhhh
Confidence 44456777777888888777776554433 6678888888888877764 33455667777777777655443
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.71 E-value=0.044 Score=28.15 Aligned_cols=16 Identities=38% Similarity=0.648 Sum_probs=5.9
Q ss_pred CccEEEcccCCCcccc
Q 005708 129 LLEILDLSESDVSEIP 144 (681)
Q Consensus 129 ~L~~L~l~~~~i~~lp 144 (681)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4455555555544443
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.28 E-value=0.056 Score=27.77 Aligned_cols=14 Identities=43% Similarity=0.475 Sum_probs=4.8
Q ss_pred CccEEEecCCCCCC
Q 005708 83 DLKVLDLGGIRGFS 96 (681)
Q Consensus 83 ~Lr~L~L~~~~~~~ 96 (681)
+||+|++++|++.+
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 34444444444433
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.92 E-value=0.25 Score=28.61 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=13.1
Q ss_pred CCCcEEEccCCCCCCCChHHH
Q 005708 58 PKLQALFLQENSPLAIPDRFF 78 (681)
Q Consensus 58 ~~Lr~L~l~~~~~~~l~~~~~ 78 (681)
++|++|++++|.+..+|.+.|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666666666554
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.92 E-value=0.25 Score=28.61 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=13.1
Q ss_pred CCCcEEEccCCCCCCCChHHH
Q 005708 58 PKLQALFLQENSPLAIPDRFF 78 (681)
Q Consensus 58 ~~Lr~L~l~~~~~~~l~~~~~ 78 (681)
++|++|++++|.+..+|.+.|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666666666554
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.82 E-value=0.0053 Score=56.38 Aligned_cols=83 Identities=14% Similarity=0.093 Sum_probs=56.8
Q ss_pred CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEEEccCCCCCCCCc-ccCCCCCccEEE
Q 005708 56 ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILD 134 (681)
Q Consensus 56 ~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~-~l~~L~~L~~L~ 134 (681)
..+....|+++.|+...+-.. |+.++.|..|+++.|++..+|..++.+..++.+++..|. ....| +++.++++++++
T Consensus 40 ~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred ccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcchhh
Confidence 556666677777666655444 566777777777777777777777777777777776666 66666 677777777777
Q ss_pred cccCCC
Q 005708 135 LSESDV 140 (681)
Q Consensus 135 l~~~~i 140 (681)
+.++.+
T Consensus 118 ~k~~~~ 123 (326)
T KOG0473|consen 118 QKKTEF 123 (326)
T ss_pred hccCcc
Confidence 766654
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.82 E-value=0.0076 Score=55.39 Aligned_cols=90 Identities=23% Similarity=0.191 Sum_probs=62.3
Q ss_pred CCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEEEccCCCCCCCCc-ccCCCCCccEEEcccCCCcccchhhcCC
Q 005708 72 AIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSESDVSEIPVSFGRL 150 (681)
Q Consensus 72 ~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~-~l~~L~~L~~L~l~~~~i~~lp~~i~~l 150 (681)
.+|-.-+...+..++||++.|+.-.+-..++.+..|..|+++.+. +..+| .++.+..++.++...|..+..|.+++.+
T Consensus 32 ~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~ 110 (326)
T KOG0473|consen 32 EIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKE 110 (326)
T ss_pred ccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhccchhhCCcccccc
Confidence 444333456677777888877776666666667777777777766 66666 6677777777777777777777777777
Q ss_pred ccCcEEeccCCC
Q 005708 151 GHLRLLDLTDCV 162 (681)
Q Consensus 151 ~~L~~L~L~~~~ 162 (681)
++++++++.++.
T Consensus 111 ~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 111 PHPKKNEQKKTE 122 (326)
T ss_pred CCcchhhhccCc
Confidence 777777776644
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.72 E-value=0.29 Score=28.30 Aligned_cols=20 Identities=40% Similarity=0.566 Sum_probs=13.5
Q ss_pred CCCccEEEcccCCCcccchh
Q 005708 127 LSLLEILDLSESDVSEIPVS 146 (681)
Q Consensus 127 L~~L~~L~l~~~~i~~lp~~ 146 (681)
+++|++|++++|.++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777777654
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.72 E-value=0.29 Score=28.30 Aligned_cols=20 Identities=40% Similarity=0.566 Sum_probs=13.5
Q ss_pred CCCccEEEcccCCCcccchh
Q 005708 127 LSLLEILDLSESDVSEIPVS 146 (681)
Q Consensus 127 L~~L~~L~l~~~~i~~lp~~ 146 (681)
+++|++|++++|.++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777777654
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=86.21 E-value=0.41 Score=27.71 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=13.1
Q ss_pred cccccEEEeccCCCcee
Q 005708 603 FLALAALLIIDCPSMKT 619 (681)
Q Consensus 603 ~~sL~~L~i~~C~~L~~ 619 (681)
||+|+.|++.+|++++.
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 46788888888888764
No 84
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=76.85 E-value=0.049 Score=58.00 Aligned_cols=177 Identities=24% Similarity=0.113 Sum_probs=77.6
Q ss_pred ccEEEccCCCCccCC-----CCC-CCCCCcEEEccCCCCCCCCh----HHHhCC-CCccEEEecCCCCC-----CCCccc
Q 005708 38 LTGISLMFNDIHEVP-----DEL-ECPKLQALFLQENSPLAIPD----RFFQGM-KDLKVLDLGGIRGF-----SLPSSL 101 (681)
Q Consensus 38 lr~L~l~~~~~~~l~-----~~~-~~~~Lr~L~l~~~~~~~l~~----~~~~~l-~~Lr~L~L~~~~~~-----~lp~~i 101 (681)
++++++.+|.+..-. ... ..+.|..|++++|.+..--. ..+... +.|++|++..|.+. .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 555556555554211 111 34555556666665541100 001111 34455555555442 223344
Q ss_pred cCCCCCcEEEccCCCCCCC----Cc-cc----CCCCCccEEEcccCCCcc-----cchhhcCCcc-CcEEeccCCCCCCc
Q 005708 102 SFLINLRTLSLHDCRRFGD----LP-LI----GELSLLEILDLSESDVSE-----IPVSFGRLGH-LRLLDLTDCVHLEL 166 (681)
Q Consensus 102 ~~l~~L~~L~L~~~~~~~~----l~-~l----~~L~~L~~L~l~~~~i~~-----lp~~i~~l~~-L~~L~L~~~~~~~~ 166 (681)
....+++.++++.|..... ++ .+ ....++++|++.++.++. +-..+...+. ++.|++.+|. +.+
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~-l~d 247 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK-LGD 247 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC-cch
Confidence 4455566666665552110 01 22 235556666666655541 1122333343 4455555532 221
Q ss_pred c-----ChhhhcCC-CCCcEEEcccCcccccccchhhhhhccchhhhcCCCCCcEEEEeCCCC
Q 005708 167 I-----PRDVLSSL-RKLEELYMSHSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKG 223 (681)
Q Consensus 167 ~-----~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 223 (681)
. .+. +..+ ..+++++++.|.+... ........+..++.++.|.++.|.+
T Consensus 248 ~g~~~L~~~-l~~~~~~l~~l~l~~nsi~~~-------~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 248 VGVEKLLPC-LSVLSETLRVLDLSRNSITEK-------GVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred HHHHHHHHH-hcccchhhhhhhhhcCCcccc-------chHHHHHHHhhhHHHHHhhcccCcc
Confidence 1 111 2333 4456666665543211 1123344455555666666666554
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=67.55 E-value=4.5 Score=23.46 Aligned_cols=17 Identities=47% Similarity=0.663 Sum_probs=10.5
Q ss_pred CCCccEEEcccCCCccc
Q 005708 127 LSLLEILDLSESDVSEI 143 (681)
Q Consensus 127 L~~L~~L~l~~~~i~~l 143 (681)
+++|+.|++++|+|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 35666777777666543
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=66.89 E-value=3.6 Score=23.80 Aligned_cols=18 Identities=22% Similarity=0.477 Sum_probs=12.8
Q ss_pred CCccEEEcccCCCcccch
Q 005708 128 SLLEILDLSESDVSEIPV 145 (681)
Q Consensus 128 ~~L~~L~l~~~~i~~lp~ 145 (681)
.+|++|++++|+++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 356777777777777775
No 87
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=56.13 E-value=6.2 Score=22.08 Aligned_cols=14 Identities=43% Similarity=0.634 Sum_probs=6.0
Q ss_pred CCccEEEcccCCCc
Q 005708 128 SLLEILDLSESDVS 141 (681)
Q Consensus 128 ~~L~~L~l~~~~i~ 141 (681)
++|++|++++|.++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34555555555543
No 88
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=53.02 E-value=0.17 Score=54.04 Aligned_cols=180 Identities=22% Similarity=0.171 Sum_probs=116.3
Q ss_pred CcEEEccCCCCCCCC----hHHHhCCCCccEEEecCCCCCCC-----CccccCC-CCCcEEEccCCCCCCCC-----c-c
Q 005708 60 LQALFLQENSPLAIP----DRFFQGMKDLKVLDLGGIRGFSL-----PSSLSFL-INLRTLSLHDCRRFGDL-----P-L 123 (681)
Q Consensus 60 Lr~L~l~~~~~~~l~----~~~~~~l~~Lr~L~L~~~~~~~l-----p~~i~~l-~~L~~L~L~~~~~~~~l-----~-~ 123 (681)
+..|.+.+|.+..-. ...+.....|..|++++|.+... -..+... ..|++|++..|. ++.. . .
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~-l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCS-LTSEGAAPLAAV 167 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhccc-ccccchHHHHHH
Confidence 888899999877432 22357788999999999988521 1222232 567888888887 4433 2 5
Q ss_pred cCCCCCccEEEcccCCCc-----ccchhh----cCCccCcEEeccCCCCCCccC---hhhhcCCCC-CcEEEcccCcccc
Q 005708 124 IGELSLLEILDLSESDVS-----EIPVSF----GRLGHLRLLDLTDCVHLELIP---RDVLSSLRK-LEELYMSHSFCHW 190 (681)
Q Consensus 124 l~~L~~L~~L~l~~~~i~-----~lp~~i----~~l~~L~~L~L~~~~~~~~~~---~~~l~~l~~-L~~L~l~~~~~~~ 190 (681)
+....+++.++++.|.+. .++..+ ....++++|.+++|......- ...+...+. +.+|++..|....
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 667889999999999774 223333 357899999999976432111 112455555 7778888775422
Q ss_pred cccchhhhhhccchhhhcCC-CCCcEEEEeCCCCCCCCCC------CCCCCccEEEEEecCCcC
Q 005708 191 QFESEEDARSNAKFIELGAL-SRLTSLHIDIPKGKIMPSD------MSFQNLTSFSIKIGDLEE 247 (681)
Q Consensus 191 ~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~------~~l~~L~~L~l~~~~~~~ 247 (681)
. ........+..+ ..++++++..|++...-.. ...+.++.+.+..+...+
T Consensus 248 ~-------g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 248 V-------GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred H-------HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 1 112334445555 6889999999887433221 455678888887766544
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=45.72 E-value=17 Score=21.35 Aligned_cols=13 Identities=31% Similarity=0.353 Sum_probs=7.6
Q ss_pred CCccEEEecCCCC
Q 005708 82 KDLKVLDLGGIRG 94 (681)
Q Consensus 82 ~~Lr~L~L~~~~~ 94 (681)
++|++|+|++|.+
T Consensus 2 ~~L~~LdL~~N~i 14 (28)
T smart00368 2 PSLRELDLSNNKL 14 (28)
T ss_pred CccCEEECCCCCC
Confidence 3456666666655
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=41.89 E-value=15 Score=39.12 Aligned_cols=37 Identities=27% Similarity=0.300 Sum_probs=18.7
Q ss_pred CCCCCcEEEccCCCCCCCC--hHHHhCCCCccEEEecCC
Q 005708 56 ECPKLQALFLQENSPLAIP--DRFFQGMKDLKVLDLGGI 92 (681)
Q Consensus 56 ~~~~Lr~L~l~~~~~~~l~--~~~~~~l~~Lr~L~L~~~ 92 (681)
+.+.+..+.+++|++..+. .++-...|+|+.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 4455555555555554332 122344555666666655
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=23.29 E-value=51 Score=35.35 Aligned_cols=62 Identities=23% Similarity=0.129 Sum_probs=40.9
Q ss_pred CCCCCccEEEccCCCCccCCCCC----CCCCCcEEEccCCC--CCCCChHHHhCCCCccEEEecCCCC
Q 005708 33 NTFEDLTGISLMFNDIHEVPDEL----ECPKLQALFLQENS--PLAIPDRFFQGMKDLKVLDLGGIRG 94 (681)
Q Consensus 33 ~~l~~lr~L~l~~~~~~~l~~~~----~~~~Lr~L~l~~~~--~~~l~~~~~~~l~~Lr~L~L~~~~~ 94 (681)
.+.+.+..+++++|++.++.... ..|+|.+|+|++|. +..-++-.=-+...|+.|-+.||.+
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPL 282 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcc
Confidence 45567888999999987665443 67999999999993 3322210001334566777777766
Done!