Query 005708
Match_columns 681
No_of_seqs 327 out of 3520
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 05:12:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005708.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005708hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vq2_A TLR4, TOLL-like recepto 100.0 4.9E-37 1.7E-41 342.4 32.0 520 22-616 19-557 (606)
2 3rgz_A Protein brassinosteroid 100.0 1.6E-36 5.5E-41 345.9 30.4 541 31-623 95-723 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 6.9E-36 2.4E-40 337.7 31.4 546 20-621 10-600 (680)
4 3rgz_A Protein brassinosteroid 100.0 1.6E-36 5.4E-41 346.0 25.8 465 31-550 72-549 (768)
5 3t6q_A CD180 antigen; protein- 100.0 4E-36 1.4E-40 335.1 27.7 149 37-187 34-190 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 2.5E-35 8.7E-40 328.6 33.1 525 38-636 13-553 (606)
7 1ziw_A TOLL-like receptor 3; i 100.0 2.7E-34 9.4E-39 324.7 36.3 536 39-622 7-577 (680)
8 3t6q_A CD180 antigen; protein- 100.0 1.8E-34 6.2E-39 321.7 32.9 507 39-615 15-534 (606)
9 2z81_A CD282 antigen, TOLL-lik 100.0 8.3E-36 2.8E-40 328.5 21.8 478 22-616 13-509 (549)
10 2z63_A TOLL-like receptor 4, v 100.0 1.4E-33 4.8E-38 312.4 33.5 502 20-615 13-529 (570)
11 3j0a_A TOLL-like receptor 5; m 100.0 2.4E-31 8.1E-36 306.4 32.8 486 18-550 8-537 (844)
12 2z63_A TOLL-like receptor 4, v 100.0 3.2E-31 1.1E-35 293.4 32.1 467 23-588 37-530 (570)
13 2z81_A CD282 antigen, TOLL-lik 100.0 3.1E-31 1E-35 292.0 30.3 213 24-245 36-263 (549)
14 3j0a_A TOLL-like receptor 5; m 100.0 2.6E-31 8.8E-36 306.1 28.7 517 39-636 7-555 (844)
15 2z7x_B TOLL-like receptor 1, v 100.0 2.6E-30 8.8E-35 282.5 31.1 219 39-274 3-230 (520)
16 4eco_A Uncharacterized protein 100.0 3.8E-31 1.3E-35 294.6 20.5 383 36-524 81-598 (636)
17 2z7x_B TOLL-like receptor 1, v 100.0 9.7E-30 3.3E-34 277.9 27.5 449 61-616 3-480 (520)
18 4ecn_A Leucine-rich repeat pro 100.0 5.1E-30 1.7E-34 290.0 24.7 34 36-69 323-359 (876)
19 4g8a_A TOLL-like receptor 4; l 100.0 4.5E-29 1.5E-33 280.1 30.7 124 37-161 53-183 (635)
20 4g8a_A TOLL-like receptor 4; l 100.0 1.7E-28 5.8E-33 275.3 33.0 526 39-635 34-574 (635)
21 4ecn_A Leucine-rich repeat pro 100.0 1.2E-29 4E-34 287.0 23.3 293 58-407 323-707 (876)
22 4eco_A Uncharacterized protein 100.0 5.2E-30 1.8E-34 285.4 16.5 294 58-408 81-468 (636)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.3E-27 4.3E-32 263.4 33.6 463 35-588 30-509 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.2E-28 2.5E-32 265.3 25.7 455 56-615 29-508 (562)
25 1o6v_A Internalin A; bacterial 100.0 1.6E-27 5.3E-32 256.2 26.7 187 33-241 43-229 (466)
26 1o6v_A Internalin A; bacterial 99.9 5.4E-26 1.9E-30 244.1 26.9 199 22-242 54-252 (466)
27 4fmz_A Internalin; leucine ric 99.9 9.3E-26 3.2E-30 232.9 23.4 151 30-187 38-188 (347)
28 1jl5_A Outer protein YOPM; leu 99.9 2.1E-26 7.3E-31 245.0 17.7 147 56-227 9-169 (454)
29 4fmz_A Internalin; leucine ric 99.9 2.4E-25 8.1E-30 229.8 25.1 304 55-468 41-344 (347)
30 3bz5_A Internalin-J, INLJ; leu 99.9 2.7E-25 9.2E-30 236.7 25.2 168 31-224 37-204 (457)
31 3v47_A TOLL-like receptor 5B a 99.9 5.1E-25 1.8E-29 236.3 26.9 111 369-494 297-407 (455)
32 3bz5_A Internalin-J, INLJ; leu 99.9 9.6E-26 3.3E-30 240.1 20.6 346 56-524 40-385 (457)
33 1jl5_A Outer protein YOPM; leu 99.9 2E-25 6.9E-30 237.4 18.0 186 32-245 7-207 (454)
34 3o6n_A APL1; leucine-rich repe 99.9 1.1E-24 3.9E-29 228.4 22.8 153 54-222 41-197 (390)
35 3v47_A TOLL-like receptor 5B a 99.9 9E-25 3.1E-29 234.4 22.2 378 22-469 18-407 (455)
36 2id5_A Lingo-1, leucine rich r 99.9 1.2E-23 4E-28 227.0 28.4 171 39-223 14-188 (477)
37 3o6n_A APL1; leucine-rich repe 99.9 7.4E-24 2.5E-28 222.2 24.3 303 33-441 42-350 (390)
38 2id5_A Lingo-1, leucine rich r 99.9 4.2E-23 1.4E-27 222.7 26.3 308 19-408 16-331 (477)
39 3oja_B Anopheles plasmodium-re 99.9 2E-23 7E-28 231.0 22.4 304 56-441 49-356 (597)
40 3oja_B Anopheles plasmodium-re 99.9 2.4E-23 8.1E-28 230.5 18.6 302 34-408 49-356 (597)
41 2ft3_A Biglycan; proteoglycan, 99.9 4.1E-22 1.4E-26 203.9 18.3 146 37-187 34-183 (332)
42 1xku_A Decorin; proteoglycan, 99.9 1.9E-21 6.4E-26 198.9 22.3 146 37-186 32-181 (330)
43 3ogk_B Coronatine-insensitive 99.9 1.9E-23 6.6E-28 232.0 6.7 129 79-220 109-252 (592)
44 3ogk_B Coronatine-insensitive 99.9 6.8E-24 2.3E-28 235.6 -1.5 127 56-185 110-252 (592)
45 2ft3_A Biglycan; proteoglycan, 99.9 1.9E-21 6.5E-26 199.0 16.5 155 58-229 33-190 (332)
46 4fcg_A Uncharacterized protein 99.9 2.7E-21 9.2E-26 196.9 17.1 175 35-223 80-265 (328)
47 4fcg_A Uncharacterized protein 99.9 5.8E-21 2E-25 194.4 18.7 212 18-243 85-311 (328)
48 2z80_A TOLL-like receptor 2, v 99.9 1.3E-21 4.3E-26 202.2 13.7 197 36-245 31-234 (353)
49 1xku_A Decorin; proteoglycan, 99.9 3.5E-20 1.2E-24 189.5 23.4 201 24-243 41-250 (330)
50 3zyj_A Leucine-rich repeat-con 99.8 1.2E-20 4.2E-25 200.8 18.2 189 37-240 44-238 (440)
51 1ogq_A PGIP-2, polygalacturona 99.8 3.3E-21 1.1E-25 195.0 12.9 175 36-224 50-234 (313)
52 3zyi_A Leucine-rich repeat-con 99.8 1.5E-20 5.3E-25 200.8 17.9 176 37-227 55-234 (452)
53 1ozn_A Reticulon 4 receptor; N 99.8 1.9E-20 6.6E-25 187.1 17.1 207 24-244 21-236 (285)
54 2p1m_B Transport inhibitor res 99.8 1.9E-22 6.6E-27 224.1 2.1 40 511-551 479-518 (594)
55 1z7x_W Ribonuclease inhibitor; 99.8 5.1E-23 1.7E-27 221.2 -2.8 158 58-223 3-182 (461)
56 2z80_A TOLL-like receptor 2, v 99.8 5.8E-20 2E-24 189.6 20.2 210 18-242 35-258 (353)
57 2z66_A Variable lymphocyte rec 99.8 1.3E-20 4.6E-25 190.4 13.2 174 40-226 11-190 (306)
58 2p1m_B Transport inhibitor res 99.8 5.2E-22 1.8E-26 220.6 2.6 86 512-613 455-540 (594)
59 3g06_A SSPH2 (leucine-rich rep 99.8 8.9E-19 3.1E-23 191.9 25.3 256 37-409 41-296 (622)
60 1ozn_A Reticulon 4 receptor; N 99.8 2E-19 6.9E-24 179.7 16.2 198 39-249 14-217 (285)
61 1h6u_A Internalin H; cell adhe 99.8 3E-19 1E-23 180.1 17.4 202 27-249 32-233 (308)
62 3zyj_A Leucine-rich repeat-con 99.8 3.4E-19 1.2E-23 189.7 18.0 212 22-249 51-271 (440)
63 2z66_A Variable lymphocyte rec 99.8 5.4E-19 1.8E-23 178.6 18.4 232 22-275 15-259 (306)
64 3zyi_A Leucine-rich repeat-con 99.8 4.1E-19 1.4E-23 189.7 18.3 211 23-249 63-282 (452)
65 1p9a_G Platelet glycoprotein I 99.8 8.8E-19 3E-23 174.8 17.9 198 31-244 5-206 (290)
66 1ogq_A PGIP-2, polygalacturona 99.8 9.8E-20 3.4E-24 184.2 10.5 200 31-245 71-280 (313)
67 2o6q_A Variable lymphocyte rec 99.8 2.8E-18 9.6E-23 169.7 19.9 194 37-244 17-216 (270)
68 2z62_A TOLL-like receptor 4, v 99.8 2.8E-18 9.7E-23 170.4 17.8 208 23-245 16-236 (276)
69 3o53_A Protein LRIM1, AGAP0063 99.8 2.7E-20 9.2E-25 188.9 3.1 263 37-359 11-277 (317)
70 3g06_A SSPH2 (leucine-rich rep 99.8 2.4E-17 8.2E-22 180.6 25.4 191 17-245 43-233 (622)
71 1h6u_A Internalin H; cell adhe 99.8 5.6E-18 1.9E-22 170.8 18.3 187 21-228 48-234 (308)
72 2xwt_C Thyrotropin receptor; s 99.8 1.7E-18 5.9E-23 167.9 13.9 200 26-242 23-235 (239)
73 2o6q_A Variable lymphocyte rec 99.8 1.2E-17 4.1E-22 165.1 20.3 189 21-223 23-217 (270)
74 1z7x_W Ribonuclease inhibitor; 99.8 3.3E-20 1.1E-24 199.3 -0.7 384 36-442 3-439 (461)
75 3o53_A Protein LRIM1, AGAP0063 99.8 5.5E-19 1.9E-23 179.2 6.8 242 33-304 31-277 (317)
76 2z62_A TOLL-like receptor 4, v 99.7 9.9E-18 3.4E-22 166.5 14.6 199 40-249 11-216 (276)
77 1h6t_A Internalin B; cell adhe 99.7 1E-17 3.5E-22 167.3 14.4 178 27-225 37-214 (291)
78 3rfs_A Internalin B, repeat mo 99.7 1.2E-17 4.2E-22 165.2 13.6 182 28-224 33-218 (272)
79 3m19_A Variable lymphocyte rec 99.7 5.4E-17 1.9E-21 158.5 18.0 174 37-224 15-192 (251)
80 3rfs_A Internalin B, repeat mo 99.7 3.6E-17 1.2E-21 161.8 16.7 193 37-245 20-217 (272)
81 1p9a_G Platelet glycoprotein I 99.7 4.5E-17 1.5E-21 162.4 17.0 185 22-223 18-207 (290)
82 3oja_A Leucine-rich immune mol 99.7 1.2E-17 4.1E-22 179.3 13.5 169 56-243 32-201 (487)
83 3oja_A Leucine-rich immune mol 99.7 7.5E-18 2.6E-22 180.9 9.6 232 34-296 32-269 (487)
84 2xwt_C Thyrotropin receptor; s 99.7 3.8E-17 1.3E-21 158.4 12.9 188 19-221 36-236 (239)
85 1wwl_A Monocyte differentiatio 99.7 2.7E-17 9.1E-22 166.3 12.1 180 57-248 94-289 (312)
86 1wwl_A Monocyte differentiatio 99.7 9.4E-18 3.2E-22 169.7 8.5 241 35-300 42-307 (312)
87 1h6t_A Internalin B; cell adhe 99.7 1.2E-16 4E-21 159.5 15.2 191 38-249 26-216 (291)
88 3m19_A Variable lymphocyte rec 99.7 5.1E-16 1.7E-20 151.6 18.9 167 20-189 20-192 (251)
89 1m9s_A Internalin B; cell inva 99.7 1.1E-16 3.7E-21 175.2 14.2 181 26-227 33-213 (605)
90 4ay9_X Follicle-stimulating ho 99.7 1.1E-16 3.7E-21 164.6 13.0 176 39-228 12-195 (350)
91 3e6j_A Variable lymphocyte rec 99.7 1.7E-15 5.7E-20 145.4 16.5 148 38-188 21-171 (229)
92 1xeu_A Internalin C; cellular 99.6 1.9E-16 6.5E-21 155.4 9.0 169 35-225 18-186 (263)
93 2v9t_B SLIT homolog 2 protein 99.6 1.3E-15 4.3E-20 145.2 14.5 147 39-188 14-164 (220)
94 4glp_A Monocyte differentiatio 99.6 2.8E-16 9.7E-21 158.7 10.5 215 37-274 65-304 (310)
95 1m9s_A Internalin B; cell inva 99.6 1.9E-16 6.4E-21 173.3 9.4 193 36-249 21-213 (605)
96 4ezg_A Putative uncharacterize 99.6 1.1E-15 3.6E-20 143.2 13.3 149 56-223 42-193 (197)
97 2ast_B S-phase kinase-associat 99.6 1.3E-16 4.4E-21 163.5 7.6 148 59-221 48-205 (336)
98 1xeu_A Internalin C; cellular 99.6 1.2E-15 4.1E-20 149.7 14.0 156 24-188 29-184 (263)
99 2o6s_A Variable lymphocyte rec 99.6 1.2E-15 4.1E-20 144.3 13.4 145 40-187 11-159 (208)
100 4ezg_A Putative uncharacterize 99.6 1.4E-15 5E-20 142.3 12.7 150 32-188 40-193 (197)
101 2o6s_A Variable lymphocyte rec 99.6 3.5E-15 1.2E-19 141.2 14.3 156 23-188 16-177 (208)
102 2ast_B S-phase kinase-associat 99.6 3.6E-16 1.2E-20 160.2 7.4 176 58-243 70-257 (336)
103 4glp_A Monocyte differentiatio 99.6 6.9E-16 2.4E-20 155.8 9.3 158 82-248 91-266 (310)
104 2v70_A SLIT-2, SLIT homolog 2 99.6 4.1E-15 1.4E-19 141.7 14.1 147 39-188 14-165 (220)
105 3cvr_A Invasion plasmid antige 99.6 1.4E-14 4.9E-19 156.6 17.0 175 37-245 60-242 (571)
106 2ca6_A RAN GTPase-activating p 99.6 2.9E-16 9.9E-21 164.0 3.7 185 32-224 28-257 (386)
107 3goz_A Leucine-rich repeat-con 99.6 2.3E-15 7.9E-20 155.5 10.3 231 35-274 21-294 (362)
108 2xot_A Amphoterin-induced prot 99.6 7.2E-15 2.5E-19 151.6 12.6 171 39-223 21-201 (361)
109 2xot_A Amphoterin-induced prot 99.6 1.1E-14 3.7E-19 150.3 13.7 167 19-188 23-201 (361)
110 3e6j_A Variable lymphocyte rec 99.6 5.7E-14 1.9E-18 134.7 16.1 143 23-167 28-175 (229)
111 2v9t_B SLIT homolog 2 protein 99.5 5.6E-14 1.9E-18 133.8 15.3 142 21-164 18-165 (220)
112 4ay9_X Follicle-stimulating ho 99.5 3.1E-14 1.1E-18 146.2 14.4 231 19-274 14-256 (350)
113 3cvr_A Invasion plasmid antige 99.5 8E-14 2.7E-18 150.7 18.0 173 19-224 64-243 (571)
114 3goz_A Leucine-rich repeat-con 99.5 4.5E-15 1.5E-19 153.4 7.4 174 41-223 3-208 (362)
115 2ca6_A RAN GTPase-activating p 99.5 2.6E-15 9E-20 156.7 4.9 205 32-246 56-316 (386)
116 2v70_A SLIT-2, SLIT homolog 2 99.5 9.2E-14 3.2E-18 132.3 14.9 145 22-168 19-170 (220)
117 2ell_A Acidic leucine-rich nuc 99.5 5.8E-14 2E-18 127.7 10.2 122 36-160 24-156 (168)
118 2ell_A Acidic leucine-rich nuc 99.5 2E-13 6.7E-18 124.2 12.0 125 58-186 24-157 (168)
119 2je0_A Acidic leucine-rich nuc 99.5 6.6E-14 2.3E-18 124.5 8.6 120 36-158 17-147 (149)
120 1dce_A Protein (RAB geranylger 99.5 2E-16 6.7E-21 172.2 -10.2 192 33-239 346-566 (567)
121 1a9n_A U2A', U2A'; complex (nu 99.5 7.4E-14 2.5E-18 128.0 7.5 127 56-186 17-150 (176)
122 1w8a_A SLIT protein; signaling 99.4 4.6E-13 1.6E-17 124.5 12.5 126 39-166 11-141 (192)
123 2je0_A Acidic leucine-rich nuc 99.4 1.3E-13 4.4E-18 122.6 8.3 122 58-183 17-147 (149)
124 2wfh_A SLIT homolog 2 protein 99.4 7.6E-13 2.6E-17 123.0 12.9 120 39-161 13-136 (193)
125 2o6r_A Variable lymphocyte rec 99.4 1.5E-12 5.2E-17 119.4 14.1 127 38-166 9-139 (177)
126 2wfh_A SLIT homolog 2 protein 99.4 1.8E-12 6.1E-17 120.4 14.3 123 61-188 13-138 (193)
127 1a9n_A U2A', U2A'; complex (nu 99.4 1.2E-13 4E-18 126.6 5.4 130 30-162 13-151 (176)
128 4b8c_D Glucose-repressible alc 99.4 3.3E-13 1.1E-17 151.5 9.1 150 36-189 173-329 (727)
129 4b8c_D Glucose-repressible alc 99.4 5.2E-13 1.8E-17 150.0 10.1 129 56-187 222-352 (727)
130 1w8a_A SLIT protein; signaling 99.4 1.6E-12 5.3E-17 120.9 11.4 123 61-188 11-138 (192)
131 2o6r_A Variable lymphocyte rec 99.3 1.4E-11 4.7E-16 112.9 13.4 124 60-188 9-136 (177)
132 1dce_A Protein (RAB geranylger 99.3 5.9E-12 2E-16 136.9 12.6 122 83-217 442-566 (567)
133 1ds9_A Outer arm dynein; leuci 99.3 4.6E-14 1.6E-18 132.1 -6.4 153 59-217 24-180 (198)
134 3sb4_A Hypothetical leucine ri 99.3 1.2E-11 4.2E-16 125.6 10.6 190 35-239 48-327 (329)
135 2r9u_A Variable lymphocyte rec 99.3 2.1E-11 7.1E-16 111.0 11.0 104 39-144 15-121 (174)
136 1ds9_A Outer arm dynein; leuci 99.3 4.8E-13 1.7E-17 125.1 -0.3 143 37-182 24-180 (198)
137 3g39_A Variable lymphocyte rec 99.2 9.6E-11 3.3E-15 106.2 12.5 101 39-141 12-115 (170)
138 2r9u_A Variable lymphocyte rec 99.2 8E-11 2.7E-15 107.1 10.7 98 61-162 15-116 (174)
139 3g39_A Variable lymphocyte rec 99.2 1.2E-10 4E-15 105.7 11.1 100 60-163 11-114 (170)
140 3sb4_A Hypothetical leucine ri 98.9 1.2E-09 4E-14 110.9 8.7 167 35-217 100-327 (329)
141 3un9_A NLR family member X1; l 98.9 4E-10 1.4E-14 115.8 1.7 159 57-224 71-252 (372)
142 4fdw_A Leucine rich hypothetic 98.9 3.5E-08 1.2E-12 102.3 16.4 188 37-245 158-357 (401)
143 4fdw_A Leucine rich hypothetic 98.9 6.3E-08 2.1E-12 100.4 18.0 183 36-240 113-307 (401)
144 2ifg_A High affinity nerve gro 98.8 1.7E-08 5.7E-13 103.3 10.2 98 41-141 13-116 (347)
145 2ifg_A High affinity nerve gro 98.8 1.5E-08 5.1E-13 103.6 9.4 96 63-161 13-113 (347)
146 3un9_A NLR family member X1; l 98.7 1.3E-09 4.5E-14 112.0 -1.2 152 35-188 71-251 (372)
147 4fs7_A Uncharacterized protein 98.7 4.1E-07 1.4E-11 94.6 17.0 56 56-113 69-125 (394)
148 4fs7_A Uncharacterized protein 98.6 3E-06 1E-10 88.0 20.6 133 70-221 59-195 (394)
149 3e4g_A ATP synthase subunit S, 98.5 5.4E-08 1.8E-12 86.7 3.8 71 510-592 82-155 (176)
150 3e4g_A ATP synthase subunit S, 98.5 6.1E-08 2.1E-12 86.3 3.2 94 513-619 61-154 (176)
151 2ra8_A Uncharacterized protein 98.4 3E-07 1E-11 93.5 7.0 158 56-223 137-319 (362)
152 4gt6_A Cell surface protein; l 98.1 0.00022 7.4E-09 73.9 20.7 59 428-492 309-367 (394)
153 4gt6_A Cell surface protein; l 98.0 0.00024 8.3E-09 73.5 19.0 144 59-221 65-215 (394)
154 2ra8_A Uncharacterized protein 98.0 4.4E-06 1.5E-10 84.9 5.0 153 31-188 134-319 (362)
155 1io0_A Tropomodulin; LRR prote 98.0 3.7E-06 1.3E-10 76.8 3.8 108 78-188 32-163 (185)
156 1io0_A Tropomodulin; LRR prote 97.8 7.3E-06 2.5E-10 74.9 3.1 103 57-161 35-161 (185)
157 3rw6_A Nuclear RNA export fact 97.7 2.1E-05 7.3E-10 75.5 5.1 100 58-158 141-258 (267)
158 3rw6_A Nuclear RNA export fact 97.7 2.9E-05 1E-09 74.6 5.2 104 78-183 137-258 (267)
159 4h09_A Hypothetical leucine ri 96.7 0.0085 2.9E-07 61.4 11.3 125 56-186 215-343 (379)
160 4h09_A Hypothetical leucine ri 96.6 0.012 4E-07 60.3 12.0 172 31-220 153-342 (379)
161 3rfe_A Platelet glycoprotein I 96.5 0.0048 1.6E-07 52.1 6.4 54 40-94 12-67 (130)
162 3rfe_A Platelet glycoprotein I 95.0 0.041 1.4E-06 46.2 6.2 14 84-97 33-46 (130)
163 1pgv_A TMD-1, tropomodulin TMD 94.6 0.03 1E-06 50.6 4.7 106 80-187 39-168 (197)
164 1pgv_A TMD-1, tropomodulin TMD 93.8 0.047 1.6E-06 49.3 4.1 59 103-161 39-108 (197)
165 2a5y_B CED-4; apoptosis; HET: 62.0 1.6 5.5E-05 46.7 -0.0 18 1-18 456-473 (549)
166 2lz0_A Uncharacterized protein 45.7 20 0.00068 27.9 3.9 46 68-114 6-52 (100)
No 1
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.9e-37 Score=342.44 Aligned_cols=520 Identities=19% Similarity=0.166 Sum_probs=306.2
Q ss_pred eCCcccCCCCCCCCCCccEEEccCCCCccCCCC-C-CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCC-C
Q 005708 22 AGVELKDWPSINTFEDLTGISLMFNDIHEVPDE-L-ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSL-P 98 (681)
Q Consensus 22 ~~~~~~~~~~~~~l~~lr~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~l-p 98 (681)
.+.++..+|. .-.+++++|++++|.+..++.. + .+++|++|++++|.+..+++..|+++++||+|++++|.+..+ |
T Consensus 19 ~~~~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p 97 (606)
T 3vq2_A 19 MDQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSP 97 (606)
T ss_dssp TTSCCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCT
T ss_pred cCCCcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccCh
Confidence 3455677775 2237889999999988877663 3 888999999999988888776788899999999999988666 7
Q ss_pred ccccCCCCCcEEEccCCCCCCCCc--ccCCCCCccEEEcccCCCc--ccchhhcCCccCcEEeccCCCCCCccChhhhcC
Q 005708 99 SSLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSESDVS--EIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSS 174 (681)
Q Consensus 99 ~~i~~l~~L~~L~L~~~~~~~~l~--~l~~L~~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~ 174 (681)
.+|+++++|++|++++|. +..++ .++++++|++|++++|.+. .+|..++++++|++|++++|.. ..+++..++.
T Consensus 98 ~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~ 175 (606)
T 3vq2_A 98 GSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI-QTITVNDLQF 175 (606)
T ss_dssp TSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCC-CEECTTTTHH
T ss_pred hhcCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcc-eecChhhhhh
Confidence 788899999999999888 55554 7888999999999998887 4788899999999999988654 4454433555
Q ss_pred CCCCc----EEEcccCcccccccchhhhhhccchhhhcCCCCCcEEEEeCCCCC--CCCCC-CCCCCccEEEEEecCCcC
Q 005708 175 LRKLE----ELYMSHSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKGK--IMPSD-MSFQNLTSFSIKIGDLEE 247 (681)
Q Consensus 175 l~~L~----~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~-~~l~~L~~L~l~~~~~~~ 247 (681)
+.+|+ .|++++|.+. ..+.......+|+.|++++|... ..+.. ..++.++.+.+.......
T Consensus 176 l~~L~~~l~~L~l~~n~l~------------~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 243 (606)
T 3vq2_A 176 LRENPQVNLSLDMSLNPID------------FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243 (606)
T ss_dssp HHHCTTCCCEEECTTCCCC------------EECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred hhccccccceeeccCCCcc------------eeCcccccCceeeeeeccCCccchhHHHHHhcccccccccccccccccc
Confidence 55554 7888887542 23333334447888888888653 22222 566777777766543322
Q ss_pred CCch-hHHHHHhhhccccccceeeeccccchhh-hHHHHHHHHhccceeecccccCcccccccccccccCCCcEEEEEec
Q 005708 248 DPLS-DFIELFLEKFNKRCSRAMGLSQDMRISA-LHSWIKNLLLRSEILALAEVNDLENMVSDLANDGFNELMFLVIVRC 325 (681)
Q Consensus 248 ~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~ 325 (681)
.... .+....+.......++.+.+.....+.. +|. ...+++|+.|++.++.. ... +.+. .+++|++|++.+|
T Consensus 244 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~-~~l-~~l~--~~~~L~~L~l~~n 317 (606)
T 3vq2_A 244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSI-KYL-EDVP--KHFKWQSLSIIRC 317 (606)
T ss_dssp SCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCC-CCC-CCCC--TTCCCSEEEEESC
T ss_pred CCcccccChHHhhhhhhccHhheeccccccccccccc--cccCCCCCEEEecCccc-hhh-hhcc--ccccCCEEEcccc
Confidence 1110 0001111122222333444422222221 121 22355666666655543 111 2222 2566777777666
Q ss_pred CCceEeeeccccccccccCccceeeecccccccccccCcCCCCcCCCccEEEEeeCCCCCccc-cchHHhhcCCCcEEEE
Q 005708 326 NEMKCLVNSLERTRRVTLHKLEWLAIFLNQNLVEICHGQLPAGCLSNVKRLDVGDCGSMLKIL-PSHLVQSFQNLQRLRV 404 (681)
Q Consensus 326 ~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~l~~L~~L~l 404 (681)
. +..++ .. .+++|++|+++++.....+ +...+++|+.|+++++ .++... ....+..+++|++|++
T Consensus 318 ~-l~~lp------~~-~l~~L~~L~l~~n~~~~~~-----~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~L 383 (606)
T 3vq2_A 318 Q-LKQFP------TL-DLPFLKSLTLTMNKGSISF-----KKVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDL 383 (606)
T ss_dssp C-CSSCC------CC-CCSSCCEEEEESCSSCEEC-----CCCCCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEEEC
T ss_pred c-Ccccc------cC-CCCccceeeccCCcCccch-----hhccCCCCCEEECcCC-ccCCCcchhhhhccCCcccEeEC
Confidence 3 24443 12 5666777777666433322 3345666777777664 333331 1233455667777777
Q ss_pred eeccCcceeecccccccccccccccCccCEEeeccCCCcccccCCCCCcccccccceeeeccCCccccccccccccceee
Q 005708 405 GRCELLESVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVQDCDELRQVFPTNLGKKAAV 484 (681)
Q Consensus 405 ~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~l~~~~~L 484 (681)
++|. +..++. .+..+++|+.|.+.++......+.. .+..+++|++|++++|. +....|..+..+.+|
T Consensus 384 ~~n~-l~~~~~---------~~~~l~~L~~L~l~~n~l~~~~~~~--~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L 450 (606)
T 3vq2_A 384 SFNG-AIIMSA---------NFMGLEELQHLDFQHSTLKRVTEFS--AFLSLEKLLYLDISYTN-TKIDFDGIFLGLTSL 450 (606)
T ss_dssp CSCS-EEEECC---------CCTTCTTCCEEECTTSEEESTTTTT--TTTTCTTCCEEECTTSC-CEECCTTTTTTCTTC
T ss_pred CCCc-cccchh---------hccCCCCCCeeECCCCccCCccChh--hhhccccCCEEECcCCC-CCccchhhhcCCCCC
Confidence 6654 333331 2445666777777665432221111 23456677777777664 333335566666677
Q ss_pred ceeeccccccee-EEEeccCCCCCCCCCCCCccEEEEecCCCcceecchhhHhhhccccEeEEcccccccceeccccccc
Q 005708 485 EEMVPYRKRRDH-IHIHATTSTSSPTPSLGNLVSITIRGCGQLRQLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDDGGV 563 (681)
Q Consensus 485 ~~L~l~~~~l~~-l~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~L~~~~~~~~~~~ 563 (681)
+.|++++|.+.. + . +.. +..+++|++|++++| .++.+++ ..+..+++|++|++++|. ++.+..
T Consensus 451 ~~L~l~~n~l~~~~-~--~~~----~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~------ 514 (606)
T 3vq2_A 451 NTLKMAGNSFKDNT-L--SNV----FANTTNLTFLDLSKC-QLEQISW-GVFDTLHRLQLLNMSHNN-LLFLDS------ 514 (606)
T ss_dssp CEEECTTCEEGGGE-E--CSC----CTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSC-CSCEEG------
T ss_pred CEEECCCCcCCCcc-h--HHh----hccCCCCCEEECCCC-cCCccCh-hhhcccccCCEEECCCCc-CCCcCH------
Confidence 777777775543 1 1 222 446667777777666 3444432 234566777777777663 333311
Q ss_pred cccCCCCcceeccccceeecccCCcccccccCCcccccccc-cccEEEeccCCC
Q 005708 564 GLQGASTEKITFPSLFIIQLCHLDSLACFFSAGSHATIEFL-ALAALLIIDCPS 616 (681)
Q Consensus 564 ~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~-sL~~L~i~~C~~ 616 (681)
.....+++|++|++++|+ ++.+|.. +. .+| +|++|++.++|-
T Consensus 515 ------~~~~~l~~L~~L~l~~N~-l~~~p~~-~~---~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 515 ------SHYNQLYSLSTLDCSFNR-IETSKGI-LQ---HFPKSLAFFNLTNNSV 557 (606)
T ss_dssp ------GGTTTCTTCCEEECTTSC-CCCEESC-GG---GSCTTCCEEECCSCCC
T ss_pred ------HHccCCCcCCEEECCCCc-CcccCHh-Hh---hhcccCcEEEccCCCc
Confidence 122236667777777653 6666644 22 344 477777766543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.6e-36 Score=345.91 Aligned_cols=541 Identities=17% Similarity=0.080 Sum_probs=308.0
Q ss_pred CCCCCCCccEEEccCCCCc-cCCC--CC-CCCCCcEEEccCCCCC-CCChHHHhCCCCccEEEecCCCCCC-CCcc---c
Q 005708 31 SINTFEDLTGISLMFNDIH-EVPD--EL-ECPKLQALFLQENSPL-AIPDRFFQGMKDLKVLDLGGIRGFS-LPSS---L 101 (681)
Q Consensus 31 ~~~~l~~lr~L~l~~~~~~-~l~~--~~-~~~~Lr~L~l~~~~~~-~l~~~~~~~l~~Lr~L~L~~~~~~~-lp~~---i 101 (681)
.+..+++|++|++++|.+. .+|. .+ .+++|++|++++|.+. .+|..++.++++|++|++++|.+.. .|.. +
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 174 (768)
T 3rgz_A 95 GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLS 174 (768)
T ss_dssp CCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHT
T ss_pred hhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhh
Confidence 5677778888888887775 3444 33 6777777777777765 3344334667777777777777733 3333 5
Q ss_pred cCCCCCcEEEccCCCCCCCCcccCCCCCccEEEcccCCCcccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEE
Q 005708 102 SFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEEL 181 (681)
Q Consensus 102 ~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L 181 (681)
+++++|++|++++|. +.....++++++|++|++++|.+...+..++++++|++|++++|...+.+|.. ++++++|++|
T Consensus 175 ~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L 252 (768)
T 3rgz_A 175 DGCGELKHLAISGNK-ISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLL 252 (768)
T ss_dssp TCCTTCCEEECCSSE-EESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHH-TTTCSSCCEE
T ss_pred ccCCCCCEEECCCCc-ccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHH-HhcCCCCCEE
Confidence 666666666666666 33333336666666666666666543333666666666666665544444444 5666666666
Q ss_pred EcccCcccccccchh-----------hhhhccchhhhcCC-CCCcEEEEeCCCCC-CCCCC-CCCCCccEEEEEecCCc-
Q 005708 182 YMSHSFCHWQFESEE-----------DARSNAKFIELGAL-SRLTSLHIDIPKGK-IMPSD-MSFQNLTSFSIKIGDLE- 246 (681)
Q Consensus 182 ~l~~~~~~~~~~~~~-----------~~~~~~~~~~l~~l-~~L~~L~l~~~~~~-~~~~~-~~l~~L~~L~l~~~~~~- 246 (681)
++++|.......... .......+..+... ++|++|++++|.+. .+|.. ..+++|+.|++..+...
T Consensus 253 ~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 332 (768)
T 3rgz_A 253 NISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 332 (768)
T ss_dssp ECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred ECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccC
Confidence 666654321110000 00001223333332 45555555555443 22222 44455555555444332
Q ss_pred CCCchhHHHHHhhhccccccceeeeccccchhhhHHHHHHHHhccceeecccccCcccccccccccccCCCcEEEEEecC
Q 005708 247 EDPLSDFIELFLEKFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNDLENMVSDLANDGFNELMFLVIVRCN 326 (681)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~ 326 (681)
..+.. .....++++.+.+.++.-...+|.++....++|+.|++.++.......+.+....+++|++|++.+|.
T Consensus 333 ~ip~~-------~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~ 405 (768)
T 3rgz_A 333 ELPMD-------TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405 (768)
T ss_dssp ECCHH-------HHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSE
T ss_pred cCCHH-------HHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCc
Confidence 12110 01134556666665553332344444443336666666555433333333332235667777777763
Q ss_pred CceEeeeccccccccccCccceeeecccccccccccCcCCCCcCCCccEEEEeeCCCCCccccchHHhhcCCCcEEEEee
Q 005708 327 EMKCLVNSLERTRRVTLHKLEWLAIFLNQNLVEICHGQLPAGCLSNVKRLDVGDCGSMLKILPSHLVQSFQNLQRLRVGR 406 (681)
Q Consensus 327 ~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 406 (681)
-...++. ....+++|++|++++|. +.... ....+.+++|+.|++.+|. +....+. .+..+++|+.|++++
T Consensus 406 l~~~~p~-----~l~~l~~L~~L~Ls~N~-l~~~~--p~~l~~l~~L~~L~L~~n~-l~~~~p~-~~~~l~~L~~L~L~~ 475 (768)
T 3rgz_A 406 FTGKIPP-----TLSNCSELVSLHLSFNY-LSGTI--PSSLGSLSKLRDLKLWLNM-LEGEIPQ-ELMYVKTLETLILDF 475 (768)
T ss_dssp EEEECCG-----GGGGCTTCCEEECCSSE-EESCC--CGGGGGCTTCCEEECCSSC-CCSCCCG-GGGGCTTCCEEECCS
T ss_pred cccccCH-----HHhcCCCCCEEECcCCc-ccCcc--cHHHhcCCCCCEEECCCCc-ccCcCCH-HHcCCCCceEEEecC
Confidence 2222222 45667778888887774 22111 1112456778888888764 3323232 345678888888888
Q ss_pred ccCcceeecccccccccccccccCccCEEeeccCCCcccccCCCCCcccccccceeeeccCCccccccccccccceeece
Q 005708 407 CELLESVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVQDCDELRQVFPTNLGKKAAVEE 486 (681)
Q Consensus 407 c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~l~~~~~L~~ 486 (681)
|.....++. .+..+++|+.|+++++.....+|.. +..+++|++|++++|.- ....|..+..+.+|+.
T Consensus 476 N~l~~~~p~---------~l~~l~~L~~L~L~~N~l~~~~p~~---~~~l~~L~~L~L~~N~l-~~~~p~~l~~l~~L~~ 542 (768)
T 3rgz_A 476 NDLTGEIPS---------GLSNCTNLNWISLSNNRLTGEIPKW---IGRLENLAILKLSNNSF-SGNIPAELGDCRSLIW 542 (768)
T ss_dssp SCCCSCCCG---------GGGGCTTCCEEECCSSCCCSCCCGG---GGGCTTCCEEECCSSCC-EEECCGGGGGCTTCCE
T ss_pred CcccCcCCH---------HHhcCCCCCEEEccCCccCCcCChH---HhcCCCCCEEECCCCcc-cCcCCHHHcCCCCCCE
Confidence 765444443 3566788888888887654344332 45678888888888753 3334777888888888
Q ss_pred eecccccceeEEEeccC---------------------------------------------------------------
Q 005708 487 MVPYRKRRDHIHIHATT--------------------------------------------------------------- 503 (681)
Q Consensus 487 L~l~~~~l~~l~~~~~~--------------------------------------------------------------- 503 (681)
|++++|.+... ++...
T Consensus 543 L~Ls~N~l~g~-ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 621 (768)
T 3rgz_A 543 LDLNTNLFNGT-IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621 (768)
T ss_dssp EECCSSEEESB-CCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEE
T ss_pred EECCCCccCCc-CChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceec
Confidence 88888855411 11000
Q ss_pred -CCCCCCCCCCCccEEEEecCCCcceecchhhHhhhccccEeEEcccccccceeccccccccccCCCCcceeccccceee
Q 005708 504 -STSSPTPSLGNLVSITIRGCGQLRQLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDDGGVGLQGASTEKITFPSLFIIQ 582 (681)
Q Consensus 504 -~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 582 (681)
.....+..+++|+.|++++|.--..++. .+..+++|+.|+++++.--..+ |..+..+++|++|+
T Consensus 622 g~~~~~~~~l~~L~~LdLs~N~l~g~ip~--~l~~l~~L~~L~Ls~N~l~g~i-------------p~~l~~L~~L~~Ld 686 (768)
T 3rgz_A 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPK--EIGSMPYLFILNLGHNDISGSI-------------PDEVGDLRGLNILD 686 (768)
T ss_dssp EECCCSCSSSBCCCEEECCSSCCBSCCCG--GGGGCTTCCEEECCSSCCCSCC-------------CGGGGGCTTCCEEE
T ss_pred ccCchhhhccccccEEECcCCcccccCCH--HHhccccCCEEeCcCCccCCCC-------------ChHHhCCCCCCEEE
Confidence 0001234567888889988854444433 3678889999999888532233 23455588999999
Q ss_pred cccCCcccccccCCcccccccccccEEEeccCCCceeecCC
Q 005708 583 LCHLDSLACFFSAGSHATIEFLALAALLIIDCPSMKTFGYG 623 (681)
Q Consensus 583 l~~c~~L~~~~~~~~~~~~~~~sL~~L~i~~C~~L~~~~~~ 623 (681)
|+++.--..+| ..+. .+++|++|++++++---.+|.+
T Consensus 687 Ls~N~l~g~ip-~~l~---~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 687 LSSNKLDGRIP-QAMS---ALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp CCSSCCEECCC-GGGG---GCCCCSEEECCSSEEEEECCSS
T ss_pred CCCCcccCcCC-hHHh---CCCCCCEEECcCCcccccCCCc
Confidence 99875444555 3333 4788999999988766667764
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.9e-36 Score=337.72 Aligned_cols=546 Identities=16% Similarity=0.129 Sum_probs=316.6
Q ss_pred EEeCCcccCCCCCCCCCCccEEEccCCCCccCCCC-C-CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCC
Q 005708 20 IKAGVELKDWPSINTFEDLTGISLMFNDIHEVPDE-L-ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSL 97 (681)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~lr~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~l 97 (681)
...+..+..+|.- -.+++++|++++|.+..++.. + .+++|++|++++|.+..+++..|+++++|++|++++|.+..+
T Consensus 10 ~cs~~~L~~ip~~-~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l 88 (680)
T 1ziw_A 10 DCSHLKLTQVPDD-LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL 88 (680)
T ss_dssp ECCSSCCSSCCSC-SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCC
T ss_pred ECCCCCccccccc-cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCcc
Confidence 3344556777752 237899999999999888764 3 889999999999999988777789999999999999999888
Q ss_pred Cc-cccCCCCCcEEEccCCCCCCCCc--ccCCCCCccEEEcccCCCccc-chhhcCCccCcEEeccCCCCCCccChhhhc
Q 005708 98 PS-SLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSESDVSEI-PVSFGRLGHLRLLDLTDCVHLELIPRDVLS 173 (681)
Q Consensus 98 p~-~i~~l~~L~~L~L~~~~~~~~l~--~l~~L~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~~~~~~l~ 173 (681)
|. .|+++++|++|++++|. +..++ .++++++|++|++++|.++.. |..++++++|++|++++|. +..+++..+.
T Consensus 89 ~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 166 (680)
T 1ziw_A 89 SDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELD 166 (680)
T ss_dssp CTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHG
T ss_pred ChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhh
Confidence 86 58999999999999998 66665 789999999999999988865 5568899999999999965 4455544343
Q ss_pred --CCCCCcEEEcccCcccccccchhhh-----------------hhccchhhhcCCCCCcEEEEeCCCCCCCCCC--CCC
Q 005708 174 --SLRKLEELYMSHSFCHWQFESEEDA-----------------RSNAKFIELGALSRLTSLHIDIPKGKIMPSD--MSF 232 (681)
Q Consensus 174 --~l~~L~~L~l~~~~~~~~~~~~~~~-----------------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l 232 (681)
++++|++|++++|.+.....+.-.. ........+ ..++|+.|+++++.+...+.. ..+
T Consensus 167 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l-~~~~L~~L~L~~n~l~~~~~~~~~~l 245 (680)
T 1ziw_A 167 IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL-ANTSIRNLSLSNSQLSTTSNTTFLGL 245 (680)
T ss_dssp GGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHH-TTSCCCEEECTTSCCCEECTTTTGGG
T ss_pred ccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHh-hhccccEEEccCCcccccChhHhhcc
Confidence 5688999999888653222110000 000000111 236777888887776544332 223
Q ss_pred --CCccEEEEEecCCcCCCchhHHHHHhhhccccccceeeeccccchhhhHHHHHHHHhccceeecccccCccc----cc
Q 005708 233 --QNLTSFSIKIGDLEEDPLSDFIELFLEKFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNDLEN----MV 306 (681)
Q Consensus 233 --~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~ 306 (681)
++|+.|++..+.....+... ....++++.+.+.++.-....|..+ ..+++|+.|++.++..... .+
T Consensus 246 ~~~~L~~L~Ls~n~l~~~~~~~-------~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~l 317 (680)
T 1ziw_A 246 KWTNLTMLDLSYNNLNVVGNDS-------FAWLPQLEYFFLEYNNIQHLFSHSL-HGLFNVRYLNLKRSFTKQSISLASL 317 (680)
T ss_dssp GGSCCCEEECTTSCCCEECTTT-------TTTCTTCCEEECCSCCBSEECTTTT-TTCTTCCEEECTTCBCCC------C
T ss_pred CcCCCCEEECCCCCcCccCccc-------ccCcccccEeeCCCCccCccChhhh-cCCCCccEEeccchhhhcccccccc
Confidence 34777777766544332110 1245677777777653222122222 2356777777765321110 11
Q ss_pred cc---ccccccCCCcEEEEEecCCceEeeeccccccccccCccceeeecccc-cccccccCcCCCCcCCCccEEEEeeCC
Q 005708 307 SD---LANDGFNELMFLVIVRCNEMKCLVNSLERTRRVTLHKLEWLAIFLNQ-NLVEICHGQLPAGCLSNVKRLDVGDCG 382 (681)
Q Consensus 307 ~~---l~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~-~l~~~~~~~~~~~~~~~L~~L~l~~c~ 382 (681)
+. .....+++|++|++.++ .+..++.. .+..+++|++|++++|. .+..+....+.....++|+.|++.+|
T Consensus 318 p~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~----~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n- 391 (680)
T 1ziw_A 318 PKIDDFSFQWLKCLEHLNMEDN-DIPGIKSN----MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN- 391 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSC-CBCCCCTT----TTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTS-
T ss_pred cccChhhcccCCCCCEEECCCC-ccCCCChh----HhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCC-
Confidence 11 11234677888888777 34333222 35566777777777763 12221111111112246777777764
Q ss_pred CCCccccchHHhhcCCCcEEEEeeccCcceeecccccccccccccccCccCEEeeccCCCcccccCCCCCccccccccee
Q 005708 383 SMLKILPSHLVQSFQNLQRLRVGRCELLESVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKV 462 (681)
Q Consensus 383 ~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L 462 (681)
.++.+.+ ..+..+++|+.|+++++.....++. ..+..+++|+.|.++++. +..+... .+..+++|+.|
T Consensus 392 ~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~--------~~~~~l~~L~~L~Ls~n~-l~~~~~~--~~~~~~~L~~L 459 (680)
T 1ziw_A 392 KISKIES-DAFSWLGHLEVLDLGLNEIGQELTG--------QEWRGLENIFEIYLSYNK-YLQLTRN--SFALVPSLQRL 459 (680)
T ss_dssp CCCEECT-TTTTTCTTCCEEECCSSCCEEECCS--------GGGTTCTTCCEEECCSCS-EEECCTT--TTTTCTTCCEE
T ss_pred CCCeECh-hhhhCCCCCCEEeCCCCcCccccCc--------ccccCcccccEEecCCCC-cceeChh--hhhcCcccccc
Confidence 3444433 2345567777777776654333321 123455666666666654 2222222 23355666666
Q ss_pred eeccCCcc-ccccccccccceeeceeecccccceeEEEeccCCCCCCCCCCCCccEEEEecCCCcceecch-------hh
Q 005708 463 RVQDCDEL-RQVFPTNLGKKAAVEEMVPYRKRRDHIHIHATTSTSSPTPSLGNLVSITIRGCGQLRQLFTT-------SM 534 (681)
Q Consensus 463 ~i~~c~~l-~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~-------~~ 534 (681)
++++|.-- ....|..+..+.+|+.|++++|+++.+ +.. .+..+++|+.|++++|. ++.++.. ..
T Consensus 460 ~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i----~~~---~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~ 531 (680)
T 1ziw_A 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI----NDD---MLEGLEKLEILDLQHNN-LARLWKHANPGGPIYF 531 (680)
T ss_dssp ECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCC----CTT---TTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCT
T ss_pred hhccccccccccCCcccccCCCCCEEECCCCCCCcC----Chh---hhccccccCEEeCCCCC-ccccchhhccCCcchh
Confidence 66655321 012255556666666666666655544 221 13355666666666553 3332111 12
Q ss_pred HhhhccccEeEEcccccccceeccccccccccCCCCcceeccccceeecccCCcccccccCCcccccccccccEEEeccC
Q 005708 535 VKSLVRLESLEVSSCPTLQEIIMDDDGGVGLQGASTEKITFPSLFIIQLCHLDSLACFFSAGSHATIEFLALAALLIIDC 614 (681)
Q Consensus 535 ~~~l~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~sL~~L~i~~C 614 (681)
+..+++|++|+++++. ++.++. .....+++|++|+++++ +++.++...+. .+++|+.|+++++
T Consensus 532 ~~~l~~L~~L~L~~N~-l~~i~~------------~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~---~l~~L~~L~L~~N 594 (680)
T 1ziw_A 532 LKGLSHLHILNLESNG-FDEIPV------------EVFKDLFELKIIDLGLN-NLNTLPASVFN---NQVSLKSLNLQKN 594 (680)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCT------------TTTTTCTTCCEEECCSS-CCCCCCTTTTT---TCTTCCEEECTTS
T ss_pred hcCCCCCCEEECCCCC-CCCCCH------------HHcccccCcceeECCCC-CCCcCCHhHhC---CCCCCCEEECCCC
Confidence 3555666666666653 333311 01222556666666553 45555544332 3556666666665
Q ss_pred CCceeec
Q 005708 615 PSMKTFG 621 (681)
Q Consensus 615 ~~L~~~~ 621 (681)
+++.++
T Consensus 595 -~l~~~~ 600 (680)
T 1ziw_A 595 -LITSVE 600 (680)
T ss_dssp -CCCBCC
T ss_pred -cCCccC
Confidence 444433
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.6e-36 Score=345.98 Aligned_cols=465 Identities=17% Similarity=0.080 Sum_probs=293.6
Q ss_pred CCCCCCCccEEEccCCCCccCCCCC-CCCCCcEEEccCCCCC-CCCh-HHHhCCCCccEEEecCCCC-CCCCccc-cCCC
Q 005708 31 SINTFEDLTGISLMFNDIHEVPDEL-ECPKLQALFLQENSPL-AIPD-RFFQGMKDLKVLDLGGIRG-FSLPSSL-SFLI 105 (681)
Q Consensus 31 ~~~~l~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~-~l~~-~~~~~l~~Lr~L~L~~~~~-~~lp~~i-~~l~ 105 (681)
++..++.|+.++++.+.+..++..+ .+++|++|++++|.+. .+|. ..++++++|++|++++|.+ ...|..+ ++++
T Consensus 72 ~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 151 (768)
T 3rgz_A 72 SLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN 151 (768)
T ss_dssp HTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCT
T ss_pred hHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCC
Confidence 3566677777777777666555555 7888899999888876 3444 1368888899999988887 4556555 7888
Q ss_pred CCcEEEccCCCCCCCCc-c---cCCCCCccEEEcccCCCcccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEE
Q 005708 106 NLRTLSLHDCRRFGDLP-L---IGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEEL 181 (681)
Q Consensus 106 ~L~~L~L~~~~~~~~l~-~---l~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L 181 (681)
+|++|++++|......| . ++++++|++|++++|.+..... +..+++|++|++++|...+.+|. ++++++|++|
T Consensus 152 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L 228 (768)
T 3rgz_A 152 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHL 228 (768)
T ss_dssp TCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEE
T ss_pred CCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcc--cccCCCCCEE
Confidence 89999998888433344 3 7888899999998888775432 37889999999999776665665 8899999999
Q ss_pred EcccCcccccccchhhhhhccchhhhcCCCCCcEEEEeCCCCCCCCCCCCCCCccEEEEEecCCc-CCCchhHHHHHhhh
Q 005708 182 YMSHSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKGKIMPSDMSFQNLTSFSIKIGDLE-EDPLSDFIELFLEK 260 (681)
Q Consensus 182 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~~~ 260 (681)
++++|.+. ...+..++.+++|++|++++|.+....+...+++|+.|++..+... ..+. .
T Consensus 229 ~Ls~n~l~-----------~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~---------~ 288 (768)
T 3rgz_A 229 DISGNKLS-----------GDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPD---------F 288 (768)
T ss_dssp ECCSSCCC-----------SCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCC---------C
T ss_pred ECcCCcCC-----------CcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCH---------H
Confidence 99988641 2567788999999999999998753333347888999888876543 2221 2
Q ss_pred c-c-ccccceeeeccccchhhhHHHHHHHHhccceeecccccCcccccccccccccCCCcEEEEEecCCceEeeeccccc
Q 005708 261 F-N-KRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNDLENMVSDLANDGFNELMFLVIVRCNEMKCLVNSLERT 338 (681)
Q Consensus 261 ~-~-~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~~ 338 (681)
. . .++++.+++.++.-...+|.++. .+++|+.|++.++...... +......+++|++|++++|.-...++.
T Consensus 289 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~i-p~~~l~~l~~L~~L~Ls~n~l~~~~p~----- 361 (768)
T 3rgz_A 289 LSGACDTLTGLDLSGNHFYGAVPPFFG-SCSLLESLALSSNNFSGEL-PMDTLLKMRGLKVLDLSFNEFSGELPE----- 361 (768)
T ss_dssp SCTTCTTCSEEECCSSEEEECCCGGGG-GCTTCCEEECCSSEEEEEC-CHHHHTTCTTCCEEECCSSEEEECCCT-----
T ss_pred HHhhcCcCCEEECcCCcCCCccchHHh-cCCCccEEECCCCcccCcC-CHHHHhcCCCCCEEeCcCCccCccccH-----
Confidence 2 2 36788888877643333343333 2677888888766533222 221112377888888887732112222
Q ss_pred cccccC-ccceeeecccccccccccCcCCCCcCCCccEEEEeeCCCCCccccchHHhhcCCCcEEEEeeccCcceeeccc
Q 005708 339 RRVTLH-KLEWLAIFLNQNLVEICHGQLPAGCLSNVKRLDVGDCGSMLKILPSHLVQSFQNLQRLRVGRCELLESVFEIE 417 (681)
Q Consensus 339 ~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 417 (681)
....++ +|++|+++++. +.......+....+++|+.|++.+|. ++...+ ..+..+++|+.|++++|..-..++.
T Consensus 362 ~l~~l~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~-- 436 (768)
T 3rgz_A 362 SLTNLSASLLTLDLSSNN-FSGPILPNLCQNPKNTLQELYLQNNG-FTGKIP-PTLSNCSELVSLHLSFNYLSGTIPS-- 436 (768)
T ss_dssp THHHHTTTCSEEECCSSE-EEEECCTTTTCSTTCCCCEEECCSSE-EEEECC-GGGGGCTTCCEEECCSSEEESCCCG--
T ss_pred HHHhhhcCCcEEEccCCC-cCCCcChhhhhcccCCccEEECCCCc-cccccC-HHHhcCCCCCEEECcCCcccCcccH--
Confidence 233444 77777777764 22111111111125677777777753 332223 2345677777777777643333332
Q ss_pred ccccccccccccCccCEEeeccCCCcccccCCCCCcccccccceeeeccCCccccccccccccceeeceeecccccceeE
Q 005708 418 RVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVQDCDELRQVFPTNLGKKAAVEEMVPYRKRRDHI 497 (681)
Q Consensus 418 ~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~l~~~~~L~~L~l~~~~l~~l 497 (681)
.+..+++|+.|.++++.....++. .+..+++|++|++++|. ++...|..+..+++|+.|++++|.+...
T Consensus 437 -------~l~~l~~L~~L~L~~n~l~~~~p~---~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 505 (768)
T 3rgz_A 437 -------SLGSLSKLRDLKLWLNMLEGEIPQ---ELMYVKTLETLILDFND-LTGEIPSGLSNCTNLNWISLSNNRLTGE 505 (768)
T ss_dssp -------GGGGCTTCCEEECCSSCCCSCCCG---GGGGCTTCCEEECCSSC-CCSCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred -------HHhcCCCCCEEECCCCcccCcCCH---HHcCCCCceEEEecCCc-ccCcCCHHHhcCCCCCEEEccCCccCCc
Confidence 345567777777777654333332 24456777777777763 3333366666677777777777755432
Q ss_pred EEeccCCCCCCCCCCCCccEEEEecCCCcceecchhhHhhhccccEeEEcccc
Q 005708 498 HIHATTSTSSPTPSLGNLVSITIRGCGQLRQLFTTSMVKSLVRLESLEVSSCP 550 (681)
Q Consensus 498 ~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~ 550 (681)
+ |.. +..+++|+.|++++|.....++. .+..+++|++|++++|+
T Consensus 506 -~--p~~----~~~l~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 506 -I--PKW----IGRLENLAILKLSNNSFSGNIPA--ELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp -C--CGG----GGGCTTCCEEECCSSCCEEECCG--GGGGCTTCCEEECCSSE
T ss_pred -C--ChH----HhcCCCCCEEECCCCcccCcCCH--HHcCCCCCCEEECCCCc
Confidence 1 222 34566777777777644334332 25666777777777665
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4e-36 Score=335.12 Aligned_cols=149 Identities=19% Similarity=0.181 Sum_probs=77.7
Q ss_pred CccEEEccCCCCccCCC-CC-CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCC-CccccCCCCCcEEEcc
Q 005708 37 DLTGISLMFNDIHEVPD-EL-ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSL-PSSLSFLINLRTLSLH 113 (681)
Q Consensus 37 ~lr~L~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~ 113 (681)
.+++|++++|.+..++. .+ .+++|++|++++|.+..+++..|+++++|++|++++|.+..+ |.+++++++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 45555565555555432 22 555555555555555555444455555555555555555332 4455555555555555
Q ss_pred CCCCCCCC-c-ccCCCCCccEEEcccCCCcccc-hhhcCCccCcEEeccCCCCCCccChhhhcCCCCCc--EEEcccCc
Q 005708 114 DCRRFGDL-P-LIGELSLLEILDLSESDVSEIP-VSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLE--ELYMSHSF 187 (681)
Q Consensus 114 ~~~~~~~l-~-~l~~L~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~--~L~l~~~~ 187 (681)
+|. ++.+ + .++++++|++|++++|.+..++ ..+..+++|++|++++|. +..+++..++++++|+ .|++++|.
T Consensus 114 ~n~-i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 114 QTG-ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNGND 190 (606)
T ss_dssp TSC-CSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTTTTCCSEEEECTTCC
T ss_pred ccC-cccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhhhhcccceeEEecCCCc
Confidence 555 4443 2 4555555555555555555431 222335555555555533 3334333355555555 55555553
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.5e-35 Score=328.61 Aligned_cols=525 Identities=16% Similarity=0.120 Sum_probs=376.8
Q ss_pred ccEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCC-CccccCCCCCcEEEccCCC
Q 005708 38 LTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSL-PSSLSFLINLRTLSLHDCR 116 (681)
Q Consensus 38 lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~ 116 (681)
-+.++.+++.++.+|.... +++++|++++|.+..++...|+++++|++|++++|.+..+ |.+|+++++|++|++++|.
T Consensus 13 ~~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDIP-SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CCceEccCCCcccCCCCCC-CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc
Confidence 3578999999999998665 8999999999999998887789999999999999999766 6789999999999999999
Q ss_pred CCCCC-c-ccCCCCCccEEEcccCCCcccc-hhhcCCccCcEEeccCCCCCC-ccChhhhcCCCCCcEEEcccCcccccc
Q 005708 117 RFGDL-P-LIGELSLLEILDLSESDVSEIP-VSFGRLGHLRLLDLTDCVHLE-LIPRDVLSSLRKLEELYMSHSFCHWQF 192 (681)
Q Consensus 117 ~~~~l-~-~l~~L~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~ 192 (681)
++.+ | .++++++|++|++++|.++.+| ..++++++|++|++++|.... .+|.. ++++++|++|++++|.+....
T Consensus 92 -l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 92 -IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTIT 169 (606)
T ss_dssp -CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEEC
T ss_pred -ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcceecC
Confidence 6665 6 8999999999999999999886 679999999999999976554 56776 899999999999998653211
Q ss_pred cchhhhhhccchhhhcCCCC-CcEEEEeCCCCCCCCCC-CCCCCccEEEEEecCCcCCCchhHHHHHhhhccccccceee
Q 005708 193 ESEEDARSNAKFIELGALSR-LTSLHIDIPKGKIMPSD-MSFQNLTSFSIKIGDLEEDPLSDFIELFLEKFNKRCSRAMG 270 (681)
Q Consensus 193 ~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 270 (681)
......+.+++. +.+|++++|.+..++.. ....+|+.|++.++.... +..+..+. ....++.+.
T Consensus 170 --------~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~----~~~~~~~~--~l~~L~~l~ 235 (606)
T 3vq2_A 170 --------VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSS----NIMKTCLQ--NLAGLHVHR 235 (606)
T ss_dssp --------TTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCH----HHHHHHHH--TTTTCEEEE
T ss_pred --------hhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccch----hHHHHHhc--ccccccccc
Confidence 112334444443 56899999999877766 444589999998875421 11111111 334444443
Q ss_pred ecc--c---cchhhhHHHHHHHH--hccceeecccccCcccccccccccccCCCcEEEEEecCCceEeeecccccccccc
Q 005708 271 LSQ--D---MRISALHSWIKNLL--LRSEILALAEVNDLENMVSDLANDGFNELMFLVIVRCNEMKCLVNSLERTRRVTL 343 (681)
Q Consensus 271 l~~--~---~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 343 (681)
+.. . ..+..++......+ -.++.+.+..........+.+ ..+++|+.|++.++ .+..++ ....+
T Consensus 236 l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~-~~~~l~------~l~~~ 306 (606)
T 3vq2_A 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKF--HCLANVSAMSLAGV-SIKYLE------DVPKH 306 (606)
T ss_dssp EEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSC--GGGTTCSEEEEESC-CCCCCC------CCCTT
T ss_pred ccccccccCCcccccChHHhhhhhhccHhheecccccccccccccc--ccCCCCCEEEecCc-cchhhh------hcccc
Confidence 321 1 11111111110001 134555554555555555553 34899999999998 445444 46678
Q ss_pred CccceeeecccccccccccCcCCCCcCCCccEEEEeeCCCCCccccchHHhhcCCCcEEEEeeccCcceeeccccccccc
Q 005708 344 HKLEWLAIFLNQNLVEICHGQLPAGCLSNVKRLDVGDCGSMLKILPSHLVQSFQNLQRLRVGRCELLESVFEIERVNIAK 423 (681)
Q Consensus 344 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 423 (681)
++|++|++++|.- ..++ .-.+++|+.|++.+|..+... + ...+++|++|++++|. +..+.. ..
T Consensus 307 ~~L~~L~l~~n~l-~~lp-----~~~l~~L~~L~l~~n~~~~~~-~---~~~l~~L~~L~ls~n~-l~~~~~------~~ 369 (606)
T 3vq2_A 307 FKWQSLSIIRCQL-KQFP-----TLDLPFLKSLTLTMNKGSISF-K---KVALPSLSYLDLSRNA-LSFSGC------CS 369 (606)
T ss_dssp CCCSEEEEESCCC-SSCC-----CCCCSSCCEEEEESCSSCEEC-C---CCCCTTCCEEECCSSC-EEEEEE------CC
T ss_pred ccCCEEEcccccC-cccc-----cCCCCccceeeccCCcCccch-h---hccCCCCCEEECcCCc-cCCCcc------hh
Confidence 8999999999853 4432 227899999999998665544 2 3478999999999974 333311 01
Q ss_pred ccccccCccCEEeeccCCCcccccCCCCCcccccccceeeeccCCccccccc-cccccceeeceeecccccceeEEEecc
Q 005708 424 EETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVQDCDELRQVFP-TNLGKKAAVEEMVPYRKRRDHIHIHAT 502 (681)
Q Consensus 424 ~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~-~~l~~~~~L~~L~l~~~~l~~l~~~~~ 502 (681)
.....+++|+.|.++++. +..++ ..+..+++|+.|++++|. +....| ..+..+.+|+.|++++|.+... . +
T Consensus 370 ~~~~~~~~L~~L~L~~n~-l~~~~---~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~--~ 441 (606)
T 3vq2_A 370 YSDLGTNSLRHLDLSFNG-AIIMS---ANFMGLEELQHLDFQHST-LKRVTEFSAFLSLEKLLYLDISYTNTKID-F--D 441 (606)
T ss_dssp HHHHCCSCCCEEECCSCS-EEEEC---CCCTTCTTCCEEECTTSE-EESTTTTTTTTTCTTCCEEECTTSCCEEC-C--T
T ss_pred hhhccCCcccEeECCCCc-cccch---hhccCCCCCCeeECCCCc-cCCccChhhhhccccCCEEECcCCCCCcc-c--h
Confidence 135678999999999976 55555 235678999999999985 444434 6788999999999999987665 1 2
Q ss_pred CCCCCCCCCCCCccEEEEecCCCcceecchhhHhhhccccEeEEcccccccceeccccccccccCCCCcceeccccceee
Q 005708 503 TSTSSPTPSLGNLVSITIRGCGQLRQLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDDGGVGLQGASTEKITFPSLFIIQ 582 (681)
Q Consensus 503 ~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 582 (681)
. .+..+++|++|++++|..-...++ ..+..+++|++|++++|. ++.+.. .....+++|++|+
T Consensus 442 ~----~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~------------~~~~~l~~L~~L~ 503 (606)
T 3vq2_A 442 G----IFLGLTSLNTLKMAGNSFKDNTLS-NVFANTTNLTFLDLSKCQ-LEQISW------------GVFDTLHRLQLLN 503 (606)
T ss_dssp T----TTTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTSC-CCEECT------------TTTTTCTTCCEEE
T ss_pred h----hhcCCCCCCEEECCCCcCCCcchH-HhhccCCCCCEEECCCCc-CCccCh------------hhhcccccCCEEE
Confidence 2 256889999999999854332222 236789999999999995 554421 2334489999999
Q ss_pred cccCCcccccccCCcccccccccccEEEeccCCCceeecCCCC-CCccceeeEEE
Q 005708 583 LCHLDSLACFFSAGSHATIEFLALAALLIIDCPSMKTFGYGDQ-LTPKLLKGVLV 636 (681)
Q Consensus 583 l~~c~~L~~~~~~~~~~~~~~~sL~~L~i~~C~~L~~~~~~~~-~~~~L~~~~~~ 636 (681)
+++| +++.+....+. .+++|++|++++|. ++.+|.... .+.+|+.+.+.
T Consensus 504 Ls~N-~l~~~~~~~~~---~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~ 553 (606)
T 3vq2_A 504 MSHN-NLLFLDSSHYN---QLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLT 553 (606)
T ss_dssp CCSS-CCSCEEGGGTT---TCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECC
T ss_pred CCCC-cCCCcCHHHcc---CCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEcc
Confidence 9998 56666444444 48999999999996 888887533 34468877754
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.7e-34 Score=324.65 Aligned_cols=536 Identities=17% Similarity=0.162 Sum_probs=354.0
Q ss_pred cEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCC-CccccCCCCCcEEEccCCCC
Q 005708 39 TGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSL-PSSLSFLINLRTLSLHDCRR 117 (681)
Q Consensus 39 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~~ 117 (681)
+.++.+++.+..+|.... +++++|++++|.+..++...|.++++|++|++++|.+..+ |..++++++|++|++++|.
T Consensus 7 ~~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~- 84 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP-TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE- 84 (680)
T ss_dssp SEEECCSSCCSSCCSCSC-TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC-
T ss_pred CeeECCCCCccccccccC-CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc-
Confidence 578999999999997664 8999999999999999988899999999999999999655 7788999999999999998
Q ss_pred CCCCc--ccCCCCCccEEEcccCCCcccc-hhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcccccccc
Q 005708 118 FGDLP--LIGELSLLEILDLSESDVSEIP-VSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHWQFES 194 (681)
Q Consensus 118 ~~~l~--~l~~L~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 194 (681)
+..+| .++++++|++|++++|.++.+| ..++++++|++|++++|......+. .++++++|++|++++|.+. +
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~----~ 159 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG-TQVQLENLQELLLSNNKIQ----A 159 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC-SSSCCTTCCEEECCSSCCC----C
T ss_pred cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCch-hhcccccCCEEEccCCccc----c
Confidence 77787 5999999999999999999886 5799999999999999765544444 3789999999999998642 1
Q ss_pred hhhhhhccchhhh--cCCCCCcEEEEeCCCCCCCCCC--CCCCCccEEEEEecCCcCCCchhHHHHHhhhccccccceee
Q 005708 195 EEDARSNAKFIEL--GALSRLTSLHIDIPKGKIMPSD--MSFQNLTSFSIKIGDLEEDPLSDFIELFLEKFNKRCSRAMG 270 (681)
Q Consensus 195 ~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 270 (681)
..+..+ ..+++|++|++++|.+..++.. ..+.+|+.+.+..+... ......+.......+++.+.
T Consensus 160 -------~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~----~~~~~~~~~~l~~~~L~~L~ 228 (680)
T 1ziw_A 160 -------LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG----PSLTEKLCLELANTSIRNLS 228 (680)
T ss_dssp -------BCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCH----HHHHHHHHHHHTTSCCCEEE
T ss_pred -------cCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccC----hhhHHHHHHHhhhccccEEE
Confidence 223333 3568999999999988766654 56777888776544321 11122233333557888888
Q ss_pred eccccchhhhHHHHHHH-HhccceeecccccCcccccccccccccCCCcEEEEEecCCceEeeeccccccccccCcccee
Q 005708 271 LSQDMRISALHSWIKNL-LLRSEILALAEVNDLENMVSDLANDGFNELMFLVIVRCNEMKCLVNSLERTRRVTLHKLEWL 349 (681)
Q Consensus 271 l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L 349 (681)
+.++.-....|.++... .++|+.|++.++.........+. .+++|++|++.++ .+..+... ....+++|++|
T Consensus 229 L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n-~l~~~~~~----~~~~l~~L~~L 301 (680)
T 1ziw_A 229 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA--WLPQLEYFFLEYN-NIQHLFSH----SLHGLFNVRYL 301 (680)
T ss_dssp CTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTT--TCTTCCEEECCSC-CBSEECTT----TTTTCTTCCEE
T ss_pred ccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccccc--CcccccEeeCCCC-ccCccChh----hhcCCCCccEE
Confidence 88764322223233221 13489999977753322222232 3789999999888 44444332 46677888888
Q ss_pred eeccccccccccc------CcCCCCcCCCccEEEEeeCCCCCccccchHHhhcCCCcEEEEeeccC-cceeecccc----
Q 005708 350 AIFLNQNLVEICH------GQLPAGCLSNVKRLDVGDCGSMLKILPSHLVQSFQNLQRLRVGRCEL-LESVFEIER---- 418 (681)
Q Consensus 350 ~l~~~~~l~~~~~------~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~-l~~~~~~~~---- 418 (681)
+++++..-..+.. .......+++|+.|++.++ .++.+.+ ..+..+++|++|++++|.. +..++....
T Consensus 302 ~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~ 379 (680)
T 1ziw_A 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKS-NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 379 (680)
T ss_dssp ECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC-CBCCCCT-TTTTTCTTCCEEECTTCBSCCCEECTTTTGGGT
T ss_pred eccchhhhcccccccccccChhhcccCCCCCEEECCCC-ccCCCCh-hHhccccCCcEEECCCCchhhhhcchhhhcccc
Confidence 8876531111100 0112345678888888874 4555433 3456678888888877642 222211000
Q ss_pred --------------cccccccccccCccCEEeeccCCCcccccCCCCCcccccccceeeeccCCccccccccccccceee
Q 005708 419 --------------VNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVQDCDELRQVFPTNLGKKAAV 484 (681)
Q Consensus 419 --------------~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~l~~~~~L 484 (681)
.......+..+++|+.|+++++.....++.. .+..+++|++|++++|. +....+..+..+++|
T Consensus 380 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L 456 (680)
T 1ziw_A 380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ--EWRGLENIFEIYLSYNK-YLQLTRNSFALVPSL 456 (680)
T ss_dssp TSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSG--GGTTCTTCCEEECCSCS-EEECCTTTTTTCTTC
T ss_pred cCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcc--cccCcccccEEecCCCC-cceeChhhhhcCccc
Confidence 0000112344556666666665432222211 23356666666666654 444445566666667
Q ss_pred ceeecccccceeEEEeccCCCCCCCCCCCCccEEEEecCCCcceecchhhHhhhccccEeEEcccccccceecccccccc
Q 005708 485 EEMVPYRKRRDHIHIHATTSTSSPTPSLGNLVSITIRGCGQLRQLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDDGGVG 564 (681)
Q Consensus 485 ~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~L~~~~~~~~~~~~ 564 (681)
+.|++++|.++.+ ......+..+++|+.|++++| .++.+++ ..+..+++|++|++++|. ++.+....
T Consensus 457 ~~L~l~~n~l~~~-----~~~p~~~~~l~~L~~L~Ls~N-~l~~i~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~----- 523 (680)
T 1ziw_A 457 QRLMLRRVALKNV-----DSSPSPFQPLRNLTILDLSNN-NIANIND-DMLEGLEKLEILDLQHNN-LARLWKHA----- 523 (680)
T ss_dssp CEEECTTSCCBCT-----TCSSCTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CGGGGSTT-----
T ss_pred ccchhcccccccc-----ccCCcccccCCCCCEEECCCC-CCCcCCh-hhhccccccCEEeCCCCC-ccccchhh-----
Confidence 7777776644322 001122567888999999887 4666543 346788999999999885 55442211
Q ss_pred ccCCC-CcceeccccceeecccCCcccccccCCcccccccccccEEEeccCCCceeecC
Q 005708 565 LQGAS-TEKITFPSLFIIQLCHLDSLACFFSAGSHATIEFLALAALLIIDCPSMKTFGY 622 (681)
Q Consensus 565 ~~~~~-~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~sL~~L~i~~C~~L~~~~~ 622 (681)
.++.+ .....+++|++|+++++ +++.++.+.+. .+++|+.|++.++ +++.++.
T Consensus 524 ~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~---~l~~L~~L~Ls~N-~l~~l~~ 577 (680)
T 1ziw_A 524 NPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFK---DLFELKIIDLGLN-NLNTLPA 577 (680)
T ss_dssp STTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTTT---TCTTCCEEECCSS-CCCCCCT
T ss_pred ccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHcc---cccCcceeECCCC-CCCcCCH
Confidence 11100 12445899999999996 68888865554 4899999999664 5555554
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.8e-34 Score=321.72 Aligned_cols=507 Identities=15% Similarity=0.122 Sum_probs=327.5
Q ss_pred cEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCC-CccccCCCCCcEEEccCCCC
Q 005708 39 TGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSL-PSSLSFLINLRTLSLHDCRR 117 (681)
Q Consensus 39 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~~ 117 (681)
++++.++..+..+|..+. +++++|++++|.+..+++..|+++++|++|++++|++..+ |.+|+++++|++|++++|.
T Consensus 15 ~~~~c~~~~l~~iP~~l~-~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~- 92 (606)
T 3t6q_A 15 KTYNCENLGLNEIPGTLP-NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP- 92 (606)
T ss_dssp TEEECTTSCCSSCCTTSC-TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-
T ss_pred ceEECCCCCcccCcCCCC-CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc-
Confidence 478888888888887663 5899999999999998777789999999999999999655 7889999999999999999
Q ss_pred CCCC-c-ccCCCCCccEEEcccCCCccc-chhhcCCccCcEEeccCCCCCCccC-hhhhcCCCCCcEEEcccCccccccc
Q 005708 118 FGDL-P-LIGELSLLEILDLSESDVSEI-PVSFGRLGHLRLLDLTDCVHLELIP-RDVLSSLRKLEELYMSHSFCHWQFE 193 (681)
Q Consensus 118 ~~~l-~-~l~~L~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~ 193 (681)
+..+ | .++++++|++|++++|.++.+ |..++++++|++|++++|... .++ +. +..+++|++|++++|.+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~-~~~l~~L~~L~L~~n~l~---- 166 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS-SIKLPK-GFPTEKLKVLDFQNNAIH---- 166 (606)
T ss_dssp CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCC-CCCCCT-TCCCTTCCEEECCSSCCC----
T ss_pred ccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCccc-ccCccc-ccCCcccCEEEcccCccc----
Confidence 5444 5 899999999999999999987 678999999999999996654 432 22 566999999999998642
Q ss_pred chhhhhhccchhhhcCCCCCc--EEEEeCCCCCCCCCC-CCCCCccEEEEEecCCcCCCchhHHHHHhhhccccccceee
Q 005708 194 SEEDARSNAKFIELGALSRLT--SLHIDIPKGKIMPSD-MSFQNLTSFSIKIGDLEEDPLSDFIELFLEKFNKRCSRAMG 270 (681)
Q Consensus 194 ~~~~~~~~~~~~~l~~l~~L~--~L~l~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 270 (681)
...+..++.+++|+ .|++++|.+..+++. ....+|+.+++.++.. ....+.......++.+.
T Consensus 167 -------~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~--------~~~~~~~l~~~~l~~l~ 231 (606)
T 3t6q_A 167 -------YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQN--------LLVIFKGLKNSTIQSLW 231 (606)
T ss_dssp -------EECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSC--------HHHHHHHTTTCEEEEEE
T ss_pred -------ccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchh--------HHHHhhhccccchhhee
Confidence 23467788999999 899999988766554 5556788887765531 11122222222333333
Q ss_pred eccccchh--hhHHHHHHHH--hccceeecccccCcccccccccccccCCCcEEEEEecCCceEeeeccccccccccCcc
Q 005708 271 LSQDMRIS--ALHSWIKNLL--LRSEILALAEVNDLENMVSDLANDGFNELMFLVIVRCNEMKCLVNSLERTRRVTLHKL 346 (681)
Q Consensus 271 l~~~~~~~--~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L 346 (681)
+....... .++......+ .+++.|++.++.. ....+. ....+++|++|+++++ .++.++. ....+++|
T Consensus 232 ~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l-~~~~~~-~~~~l~~L~~L~l~~n-~l~~lp~-----~l~~l~~L 303 (606)
T 3t6q_A 232 LGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF-FNISSN-TFHCFSGLQELDLTAT-HLSELPS-----GLVGLSTL 303 (606)
T ss_dssp CCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCC-SSCCTT-TTTTCTTCSEEECTTS-CCSCCCS-----SCCSCTTC
T ss_pred chhhccccccccChhHhchhhcCceeEEEeecCcc-CccCHH-HhccccCCCEEeccCC-ccCCCCh-----hhcccccC
Confidence 32211110 0111111111 2567777765543 222222 1123778888888877 5555554 45667788
Q ss_pred ceeeecccccccccccCcCCCCcCCCccEEEEeeCCCCCccccchHHhhcCCCcEEEEeeccCcceeecccccccccccc
Q 005708 347 EWLAIFLNQNLVEICHGQLPAGCLSNVKRLDVGDCGSMLKILPSHLVQSFQNLQRLRVGRCELLESVFEIERVNIAKEET 426 (681)
Q Consensus 347 ~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 426 (681)
++|+++++. +..+.. .....+++|+.|++.+|.....+ +...+..+++|++|++++|.... +.. ....+
T Consensus 304 ~~L~l~~n~-l~~~~~--~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~l~~L~~L~l~~n~l~~-~~~------~~~~~ 372 (606)
T 3t6q_A 304 KKLVLSANK-FENLCQ--ISASNFPSLTHLSIKGNTKRLEL-GTGCLENLENLRELDLSHDDIET-SDC------CNLQL 372 (606)
T ss_dssp CEEECTTCC-CSBGGG--GCGGGCTTCSEEECCSCSSCCBC-CSSTTTTCTTCCEEECCSSCCCE-EEE------STTTT
T ss_pred CEEECccCC-cCcCch--hhhhccCcCCEEECCCCCccccc-chhhhhccCcCCEEECCCCcccc-ccC------cchhc
Confidence 888888773 332211 12345678888888876443333 33345567888888887764322 210 01134
Q ss_pred cccCccCEEeeccCCCcccccCCCCCcccccccceeeeccCCccccccccccccceeeceeecccccceeEEEeccCCCC
Q 005708 427 ELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVQDCDELRQVFPTNLGKKAAVEEMVPYRKRRDHIHIHATTSTS 506 (681)
Q Consensus 427 ~~~~~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~ 506 (681)
..+++|+.|.++++.. ..+... .+..+++|++|++++|.-.....+..+..+.+|+.|++++|.+... +.
T Consensus 373 ~~l~~L~~L~l~~n~l-~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~--- 442 (606)
T 3t6q_A 373 RNLSHLQSLNLSYNEP-LSLKTE--AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS----SE--- 442 (606)
T ss_dssp TTCTTCCEEECCSCSC-EEECTT--TTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTT----CT---
T ss_pred ccCCCCCEEECCCCcC-CcCCHH--HhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCc----CH---
Confidence 5677788888877643 332222 2346777888888776543333334467777788888887755443 11
Q ss_pred CCCCCCCCccEEEEecCCCcce-ecchhhHhhhccccEeEEcccccccceeccccccccccCCCCcceeccccceeeccc
Q 005708 507 SPTPSLGNLVSITIRGCGQLRQ-LFTTSMVKSLVRLESLEVSSCPTLQEIIMDDDGGVGLQGASTEKITFPSLFIIQLCH 585 (681)
Q Consensus 507 ~~~~~~~~L~~L~i~~c~~l~~-l~~~~~~~~l~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 585 (681)
..+..+++|++|++++|+.-.. ++....+..+++|++|++++|. ++.+.. .....+++|++|++++
T Consensus 443 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~------------~~~~~l~~L~~L~Ls~ 509 (606)
T 3t6q_A 443 QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQ------------HAFTSLKMMNHVDLSH 509 (606)
T ss_dssp TTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-CCEECT------------TTTTTCTTCCEEECCS
T ss_pred HHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc-cCccCh------------hhhccccCCCEEECCC
Confidence 1244677788888877753221 1222345677788888888774 443311 1233367788888877
Q ss_pred CCcccccccCCcccccccccccEEEeccCC
Q 005708 586 LDSLACFFSAGSHATIEFLALAALLIIDCP 615 (681)
Q Consensus 586 c~~L~~~~~~~~~~~~~~~sL~~L~i~~C~ 615 (681)
+ +++.+....+. .+++| .|++.+|.
T Consensus 510 N-~l~~~~~~~l~---~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 510 N-RLTSSSIEALS---HLKGI-YLNLASNH 534 (606)
T ss_dssp S-CCCGGGGGGGT---TCCSC-EEECCSSC
T ss_pred C-ccCcCChhHhC---ccccc-EEECcCCc
Confidence 6 45555444443 36677 77777763
No 9
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=8.3e-36 Score=328.52 Aligned_cols=478 Identities=19% Similarity=0.222 Sum_probs=327.6
Q ss_pred eCCcccCCCCCCCCCCccEEEccCCCCccCCC-CC-CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCc
Q 005708 22 AGVELKDWPSINTFEDLTGISLMFNDIHEVPD-EL-ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPS 99 (681)
Q Consensus 22 ~~~~~~~~~~~~~l~~lr~L~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~ 99 (681)
.++.+..+|. .-.+++++|++++|.+..++. .+ .+++|++|++++|.+..++++.|+.+++|++|++++|++..+|.
T Consensus 13 ~~~~l~~ip~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 91 (549)
T 2z81_A 13 RSRSFTSIPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS 91 (549)
T ss_dssp TTSCCSSCCS-CCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH
T ss_pred CCCccccccc-cCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH
Confidence 3456677775 223788899999888887643 33 78889999999888888776668888899999999988877765
Q ss_pred c-ccCCCCCcEEEccCCCCCCC--Cc-ccCCCCCccEEEcccCC-Ccccc-hhhcCCccCcEEeccCCCCCCccChhhhc
Q 005708 100 S-LSFLINLRTLSLHDCRRFGD--LP-LIGELSLLEILDLSESD-VSEIP-VSFGRLGHLRLLDLTDCVHLELIPRDVLS 173 (681)
Q Consensus 100 ~-i~~l~~L~~L~L~~~~~~~~--l~-~l~~L~~L~~L~l~~~~-i~~lp-~~i~~l~~L~~L~L~~~~~~~~~~~~~l~ 173 (681)
. ++++++|++|++++|. ++. +| .++++++|++|++++|. +..+| ..++++++|++|++++|...+..|.. ++
T Consensus 92 ~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~ 169 (549)
T 2z81_A 92 SWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LK 169 (549)
T ss_dssp HHHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TT
T ss_pred HHhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hh
Confidence 4 8888899999998888 553 33 78888899999998887 56776 47888888999999887655555555 78
Q ss_pred CCCCCcEEEcccCcccccccchhhhhhccchhh-hcCCCCCcEEEEeCCCCCCCCC-----CCCCCCccEEEEEecCCcC
Q 005708 174 SLRKLEELYMSHSFCHWQFESEEDARSNAKFIE-LGALSRLTSLHIDIPKGKIMPS-----DMSFQNLTSFSIKIGDLEE 247 (681)
Q Consensus 174 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~-----~~~l~~L~~L~l~~~~~~~ 247 (681)
++++|++|+++++... ..+.. +..+++|+.|++++|.+...+. ...+++|+.|++..+....
T Consensus 170 ~l~~L~~L~l~~n~~~------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 237 (549)
T 2z81_A 170 SIRDIHHLTLHLSESA------------FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237 (549)
T ss_dssp TCSEEEEEEEECSBST------------THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEH
T ss_pred ccccCceEecccCccc------------ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccch
Confidence 8888888888877431 22222 3568888888888887765421 1345666666665543210
Q ss_pred CCchhHHHHHhhhccccccceeeeccccchhhhHHHHHHHHhccceeecccccCcccccccccccccCCCcEEEEEecCC
Q 005708 248 DPLSDFIELFLEKFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNDLENMVSDLANDGFNELMFLVIVRCNE 327 (681)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~ 327 (681)
..+..+.. .+ ..+++|+.+++.+|.
T Consensus 238 -------------------------------~~~~~l~~---------------------~~--~~~~~L~~l~l~~~~- 262 (549)
T 2z81_A 238 -------------------------------ESFNELLK---------------------LL--RYILELSEVEFDDCT- 262 (549)
T ss_dssp -------------------------------HHHHHHHG---------------------GG--GGCTTCCEEEEESCE-
T ss_pred -------------------------------hHHHHHHH---------------------Hh--hhhcccccccccccc-
Confidence 01111110 01 125667777777662
Q ss_pred ceEeeecc--ccccccccCccceeeecccccccccc-cCcCC--CCcCCCccEEEEeeCCCCCccccchHHhhcCCCcEE
Q 005708 328 MKCLVNSL--ERTRRVTLHKLEWLAIFLNQNLVEIC-HGQLP--AGCLSNVKRLDVGDCGSMLKILPSHLVQSFQNLQRL 402 (681)
Q Consensus 328 l~~l~~~~--~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~--~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L 402 (681)
+..+.... .......+++|+.|.+.++. +..+. ...++ ...+++|+.|++.++ .++.+ |......+++|++|
T Consensus 263 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~~l~~~~~~~~~L~~L~l~~n-~l~~i-p~~~~~~l~~L~~L 339 (549)
T 2z81_A 263 LNGLGDFNPSESDVVSELGKVETVTIRRLH-IPQFYLFYDLSTVYSLLEKVKRITVENS-KVFLV-PCSFSQHLKSLEFL 339 (549)
T ss_dssp EECCSCCCCCTTTCCCCCTTCCEEEEESCB-CSCGGGSCCCCHHHHHSTTCCEEEEESS-CCCCC-CHHHHHHCTTCCEE
T ss_pred ccccccccccchhhhhhhcccccccccccc-cchhhhcccchhhhhhcccceEEEeccC-ccccC-CHHHHhcCccccEE
Confidence 22111100 00133456777777777653 11110 00000 013478999999995 46655 55555789999999
Q ss_pred EEeeccCcceeecccccccccccccccCccCEEeeccCCCcccccCCCCCcccccccceeeeccCCccccccccccccce
Q 005708 403 RVGRCELLESVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVQDCDELRQVFPTNLGKKA 482 (681)
Q Consensus 403 ~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~l~~~~ 482 (681)
++++|.....++.. ......+++|+.|+++++. ++.++..+..+..+++|++|++++| +++.+ |..+..+.
T Consensus 340 ~Ls~N~l~~~~~~~------~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l-p~~~~~~~ 410 (549)
T 2z81_A 340 DLSENLMVEEYLKN------SACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRN-TFHPM-PDSCQWPE 410 (549)
T ss_dssp ECCSSCCCHHHHHH------HTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTTC-CCCCC-CSCCCCCT
T ss_pred EccCCccccccccc------hhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCCC-CCccC-Chhhcccc
Confidence 99998755443221 0124578999999999974 4443321112457899999999998 56665 77888889
Q ss_pred eeceeecccccceeEEEeccCCCCCCCCCCCCccEEEEecCCCcceecchhhHhhhccccEeEEcccccccceecccccc
Q 005708 483 AVEEMVPYRKRRDHIHIHATTSTSSPTPSLGNLVSITIRGCGQLRQLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDDGG 562 (681)
Q Consensus 483 ~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~L~~~~~~~~~~ 562 (681)
+|+.|++++|.++.+ +.. ..++|+.|++++| +++.++ ..+++|++|++++|. ++.++.
T Consensus 411 ~L~~L~Ls~N~l~~l----~~~------~~~~L~~L~Ls~N-~l~~~~-----~~l~~L~~L~Ls~N~-l~~ip~----- 468 (549)
T 2z81_A 411 KMRFLNLSSTGIRVV----KTC------IPQTLEVLDVSNN-NLDSFS-----LFLPRLQELYISRNK-LKTLPD----- 468 (549)
T ss_dssp TCCEEECTTSCCSCC----CTT------SCTTCSEEECCSS-CCSCCC-----CCCTTCCEEECCSSC-CSSCCC-----
T ss_pred cccEEECCCCCcccc----cch------hcCCceEEECCCC-Chhhhc-----ccCChhcEEECCCCc-cCcCCC-----
Confidence 999999999988776 443 3479999999998 566552 578999999999994 665532
Q ss_pred ccccCCCCcceeccccceeecccCCcccccccCCcccccccccccEEEeccCCC
Q 005708 563 VGLQGASTEKITFPSLFIIQLCHLDSLACFFSAGSHATIEFLALAALLIIDCPS 616 (681)
Q Consensus 563 ~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~sL~~L~i~~C~~ 616 (681)
...+++|++|+++++ +++.++...+. .+++|+.|++.+||-
T Consensus 469 ---------~~~l~~L~~L~Ls~N-~l~~~~~~~~~---~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 469 ---------ASLFPVLLVMKISRN-QLKSVPDGIFD---RLTSLQKIWLHTNPW 509 (549)
T ss_dssp ---------GGGCTTCCEEECCSS-CCCCCCTTGGG---GCTTCCEEECCSSCB
T ss_pred ---------cccCccCCEEecCCC-ccCCcCHHHHh---cCcccCEEEecCCCc
Confidence 123899999999996 67888765554 589999999999884
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-33 Score=312.37 Aligned_cols=502 Identities=18% Similarity=0.175 Sum_probs=322.5
Q ss_pred EEeCCcccCCCCCCCCCCccEEEccCCCCccCCCC-C-CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCC
Q 005708 20 IKAGVELKDWPSINTFEDLTGISLMFNDIHEVPDE-L-ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSL 97 (681)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~lr~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~l 97 (681)
...+.++..+|. .-.+++++|++++|.+..++.. + .+++|++|++++|.+..++++.|+++++|++|++++|++..+
T Consensus 13 ~c~~~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~ 91 (570)
T 2z63_A 13 QCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91 (570)
T ss_dssp ECCSSCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred EeCCCCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCcc
Confidence 333455677775 2346799999999999877653 2 889999999999999888877789999999999999998666
Q ss_pred C-ccccCCCCCcEEEccCCCCCCCCc--ccCCCCCccEEEcccCCCcc--cchhhcCCccCcEEeccCCCCCCccChhhh
Q 005708 98 P-SSLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSESDVSE--IPVSFGRLGHLRLLDLTDCVHLELIPRDVL 172 (681)
Q Consensus 98 p-~~i~~l~~L~~L~L~~~~~~~~l~--~l~~L~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l 172 (681)
| .+|+++++|++|++++|. ++.++ .++++++|++|++++|.++. +|..++++++|++|++++|. +..+++..+
T Consensus 92 ~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~ 169 (570)
T 2z63_A 92 ALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDL 169 (570)
T ss_dssp CTTTTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGG
T ss_pred CHhhhcCccccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHc
Confidence 4 678899999999999998 77776 58899999999999998875 68889999999999999865 445554447
Q ss_pred cCCCCC----cEEEcccCcccccccchhhhhhccchhhhcCCCCCcEEEEeCCCCC--CCCCC-CCCCCccEEEEEecCC
Q 005708 173 SSLRKL----EELYMSHSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKGK--IMPSD-MSFQNLTSFSIKIGDL 245 (681)
Q Consensus 173 ~~l~~L----~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~-~~l~~L~~L~l~~~~~ 245 (681)
+++++| +.|++++|.+.. ..+..+..+ +|+.|++.++... .++.. ..+++++...+.....
T Consensus 170 ~~l~~L~~~~~~L~l~~n~l~~-----------~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~ 237 (570)
T 2z63_A 170 RVLHQMPLLNLSLDLSLNPMNF-----------IQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237 (570)
T ss_dssp HHHHTCTTCCCEEECTTCCCCE-----------ECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEEC
T ss_pred cchhccchhhhhcccCCCCcee-----------cCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccc
Confidence 777777 788888875421 222334433 7888888876432 11111 3445555555443221
Q ss_pred cCCCchhHHHHHhhhccccccceeeeccccchhhhHHHHHHHHhccceeecccccCcccccccccccccCCCcEEEEEec
Q 005708 246 EEDPLSDFIELFLEKFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNDLENMVSDLANDGFNELMFLVIVRC 325 (681)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~ 325 (681)
.... .++.+.-....++. --.++.+.+..+.......+.. ...+++|++|++.++
T Consensus 238 ~~~~---------------~l~~~~~~~~~~l~---------~l~l~~l~l~~~~~~~~~~~~~-~~~l~~L~~L~l~~~ 292 (570)
T 2z63_A 238 RNEG---------------NLEKFDKSALEGLC---------NLTIEEFRLAYLDYYLDDIIDL-FNCLTNVSSFSLVSV 292 (570)
T ss_dssp CCCS---------------SCEECCTTTTGGGG---------GSEEEEEEEEETTEEESCSTTT-TGGGTTCSEEEEESC
T ss_pred cCch---------------hhhhcchhhhcccc---------ccchhhhhhhcchhhhhhchhh-hcCcCcccEEEecCc
Confidence 1100 00000000000000 0123444444432222222221 123788888888887
Q ss_pred CCceEeeeccccccccccCccceeeecccccccccccCcCCCCcCCCccEEEEeeCCCCCccccchHHhhcCCCcEEEEe
Q 005708 326 NEMKCLVNSLERTRRVTLHKLEWLAIFLNQNLVEICHGQLPAGCLSNVKRLDVGDCGSMLKILPSHLVQSFQNLQRLRVG 405 (681)
Q Consensus 326 ~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~ 405 (681)
.+..++. ....+ +|++|++.+|. +. .+|...+++|+.|++.++...... +. ..+++|++|+++
T Consensus 293 -~l~~l~~-----~~~~~-~L~~L~l~~n~-~~-----~l~~~~l~~L~~L~l~~n~~~~~~-~~---~~~~~L~~L~l~ 355 (570)
T 2z63_A 293 -TIERVKD-----FSYNF-GWQHLELVNCK-FG-----QFPTLKLKSLKRLTFTSNKGGNAF-SE---VDLPSLEFLDLS 355 (570)
T ss_dssp -EECSCCB-----CCSCC-CCSEEEEESCB-CS-----SCCBCBCSSCCEEEEESCBSCCBC-CC---CBCTTCCEEECC
T ss_pred -cchhhhh-----hhccC-CccEEeeccCc-cc-----ccCcccccccCEEeCcCCcccccc-cc---ccCCCCCEEeCc
Confidence 3444443 23444 88888888874 22 344457788888888886533322 22 467888888888
Q ss_pred eccCcceeecccccccccccccccCccCEEeeccCCCcccccCCCCCcccccccceeeeccCCccccccccccccceeec
Q 005708 406 RCELLESVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVQDCDELRQVFPTNLGKKAAVE 485 (681)
Q Consensus 406 ~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~l~~~~~L~ 485 (681)
+|.. ..... .......+++|+.|.++++. +..++.. +..+++|++|++++|.-.....+..+..+.+|+
T Consensus 356 ~n~l-~~~~~------~~~~~~~~~~L~~L~l~~n~-l~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 424 (570)
T 2z63_A 356 RNGL-SFKGC------CSQSDFGTTSLKYLDLSFNG-VITMSSN---FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424 (570)
T ss_dssp SSCC-BEEEE------EEHHHHTCSCCCEEECCSCS-EEEEEEE---EETCTTCCEEECTTSEEESCTTSCTTTTCTTCC
T ss_pred CCcc-Ccccc------ccccccccCccCEEECCCCc-ccccccc---ccccCCCCEEEccCCccccccchhhhhcCCCCC
Confidence 8653 22210 00134567888888888865 3333322 456788888888886533322224677788888
Q ss_pred eeecccccceeEEEeccCCCCCCCCCCCCccEEEEecCCCc-ceecchhhHhhhccccEeEEcccccccceecccccccc
Q 005708 486 EMVPYRKRRDHIHIHATTSTSSPTPSLGNLVSITIRGCGQL-RQLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDDGGVG 564 (681)
Q Consensus 486 ~L~l~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~i~~c~~l-~~l~~~~~~~~l~~L~~L~i~~C~~L~~~~~~~~~~~~ 564 (681)
.|++++|.+... .. ..+..+++|++|++++|... ..++ ..+..+++|++|++++|. ++.+..
T Consensus 425 ~L~l~~n~l~~~----~~---~~~~~l~~L~~L~l~~n~l~~~~~p--~~~~~l~~L~~L~l~~n~-l~~~~~------- 487 (570)
T 2z63_A 425 YLDISHTHTRVA----FN---GIFNGLSSLEVLKMAGNSFQENFLP--DIFTELRNLTFLDLSQCQ-LEQLSP------- 487 (570)
T ss_dssp EEECTTSCCEEC----CT---TTTTTCTTCCEEECTTCEEGGGEEC--SCCTTCTTCCEEECTTSC-CCEECT-------
T ss_pred EEeCcCCccccc----ch---hhhhcCCcCcEEECcCCcCccccch--hhhhcccCCCEEECCCCc-cccCCh-------
Confidence 888888866554 21 12457788888888888533 1333 236778888888888885 444311
Q ss_pred ccCCCCcceeccccceeecccCCcccccccCCcccccccccccEEEeccCC
Q 005708 565 LQGASTEKITFPSLFIIQLCHLDSLACFFSAGSHATIEFLALAALLIIDCP 615 (681)
Q Consensus 565 ~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~sL~~L~i~~C~ 615 (681)
.....+++|++|++++| +++.++...+. .+++|++|++.++|
T Consensus 488 -----~~~~~l~~L~~L~l~~n-~l~~~~~~~~~---~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 488 -----TAFNSLSSLQVLNMASN-QLKSVPDGIFD---RLTSLQKIWLHTNP 529 (570)
T ss_dssp -----TTTTTCTTCCEEECCSS-CCSCCCTTTTT---TCTTCCEEECCSSC
T ss_pred -----hhhhcccCCCEEeCCCC-cCCCCCHHHhh---cccCCcEEEecCCc
Confidence 23334788888888886 67777655444 47888888888876
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-31 Score=306.44 Aligned_cols=486 Identities=18% Similarity=0.181 Sum_probs=280.9
Q ss_pred eEEEeCCcccCCCCCCCCCCccEEEccCCCCccCCC-CC-CCCCCcEEEccCCC-CCCCChHHHhCCCCccEEEecCCCC
Q 005708 18 FMIKAGVELKDWPSINTFEDLTGISLMFNDIHEVPD-EL-ECPKLQALFLQENS-PLAIPDRFFQGMKDLKVLDLGGIRG 94 (681)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~lr~L~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~-~~~l~~~~~~~l~~Lr~L~L~~~~~ 94 (681)
.+...+.++..+|. ..+++++|++++|.+..+.. .+ .+++|++|++++|. +..+++..|+++++|++|+|++|.+
T Consensus 8 ~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l 85 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85 (844)
T ss_dssp EEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC
T ss_pred EEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC
Confidence 34445566888887 66899999999999987744 33 89999999999995 4477666689999999999999999
Q ss_pred CCC-CccccCCCCCcEEEccCCCCCCCCc---ccCCCCCccEEEcccCCCccc--chhhcCCccCcEEeccCCCCCCccC
Q 005708 95 FSL-PSSLSFLINLRTLSLHDCRRFGDLP---LIGELSLLEILDLSESDVSEI--PVSFGRLGHLRLLDLTDCVHLELIP 168 (681)
Q Consensus 95 ~~l-p~~i~~l~~L~~L~L~~~~~~~~l~---~l~~L~~L~~L~l~~~~i~~l--p~~i~~l~~L~~L~L~~~~~~~~~~ 168 (681)
..+ |.+++++++|++|++++|.....+| .++++++|++|++++|.++.+ +..++++++|++|++++|......+
T Consensus 86 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~ 165 (844)
T 3j0a_A 86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165 (844)
T ss_dssp CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence 655 8899999999999999998444454 399999999999999999866 3579999999999999976555455
Q ss_pred hhhhcCC--CCCcEEEcccCcccccccchhhhhhccchhhhcCCC------CCcEEEEeCCCCC-CCCCC----CCCCCc
Q 005708 169 RDVLSSL--RKLEELYMSHSFCHWQFESEEDARSNAKFIELGALS------RLTSLHIDIPKGK-IMPSD----MSFQNL 235 (681)
Q Consensus 169 ~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~------~L~~L~l~~~~~~-~~~~~----~~l~~L 235 (681)
.. +..+ ++|+.|++++|.... ..+..+..++ .|+.|++++|.+. ..+.. .....+
T Consensus 166 ~~-l~~l~~~~L~~L~L~~n~l~~-----------~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l 233 (844)
T 3j0a_A 166 HE-LEPLQGKTLSFFSLAANSLYS-----------RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA 233 (844)
T ss_dssp GG-GHHHHHCSSCCCEECCSBSCC-----------CCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCB
T ss_pred HH-cccccCCccceEECCCCcccc-----------ccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccc
Confidence 54 6766 899999999886432 2233334443 4999999998763 22222 233456
Q ss_pred cEEEEEecCCcC-CCc---hhHHHHHhhhccccccceeeeccccchhhhHHHHHHHHhccceeecccccCcccccccccc
Q 005708 236 TSFSIKIGDLEE-DPL---SDFIELFLEKFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNDLENMVSDLAN 311 (681)
Q Consensus 236 ~~L~l~~~~~~~-~~~---~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 311 (681)
..+.+....... ... .+...........++++.+.+.++.-.. ++......+++|+.|++.++.........+
T Consensus 234 ~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-- 310 (844)
T 3j0a_A 234 FSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS-LNSRVFETLKDLKVLNLAYNKINKIADEAF-- 310 (844)
T ss_dssp SEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE-ECSCCSSSCCCCCEEEEESCCCCEECTTTT--
T ss_pred cceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc-cChhhhhcCCCCCEEECCCCcCCCCChHHh--
Confidence 666654211100 000 0000001112223556666666542111 111112224566666665544222211122
Q ss_pred cccCCCcEEEEEecCCceEeeeccccccccccCccceeeecccccccccccCcCCCCcCCCccEEEEeeCCCCCccccch
Q 005708 312 DGFNELMFLVIVRCNEMKCLVNSLERTRRVTLHKLEWLAIFLNQNLVEICHGQLPAGCLSNVKRLDVGDCGSMLKILPSH 391 (681)
Q Consensus 312 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 391 (681)
..+++|++|+++++ .+..+... ....+++|++|+++++ .+..+... ....+++|+.|+++++ .++.+..
T Consensus 311 ~~l~~L~~L~Ls~N-~l~~~~~~----~~~~l~~L~~L~L~~N-~i~~~~~~--~~~~l~~L~~L~Ls~N-~l~~i~~-- 379 (844)
T 3j0a_A 311 YGLDNLQVLNLSYN-LLGELYSS----NFYGLPKVAYIDLQKN-HIAIIQDQ--TFKFLEKLQTLDLRDN-ALTTIHF-- 379 (844)
T ss_dssp TTCSSCCEEEEESC-CCSCCCSC----SCSSCTTCCEEECCSC-CCCCCCSS--CSCSCCCCCEEEEETC-CSCCCSS--
T ss_pred cCCCCCCEEECCCC-CCCccCHH----HhcCCCCCCEEECCCC-CCCccChh--hhcCCCCCCEEECCCC-CCCcccC--
Confidence 23667777777766 33333221 4555667777777766 33332211 1234567777777763 3444321
Q ss_pred HHhhcCCCcEEEEeeccCcceeeccccc----c---------cccccccccCccCEEeeccCCCcccccCCCCCcccccc
Q 005708 392 LVQSFQNLQRLRVGRCELLESVFEIERV----N---------IAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHN 458 (681)
Q Consensus 392 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~----~---------~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~l~~ 458 (681)
+++|+.|.++++. +..++..... + ........+++|+.|.++++. +..++... .+..+++
T Consensus 380 ----~~~L~~L~l~~N~-l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-~~~~~~~ 452 (844)
T 3j0a_A 380 ----IPSIPDIFLSGNK-LVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR-FSSCSGDQ-TPSENPS 452 (844)
T ss_dssp ----CCSCSEEEEESCC-CCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCC-CCCCCSSS-SSCSCTT
T ss_pred ----CCCcchhccCCCC-cccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCc-cccccccc-ccccCCc
Confidence 5667777776653 2233221000 0 000011245556666665543 22221111 1123455
Q ss_pred cceeeeccCCccc-----cccccccccceeeceeecccccceeEEEeccCCCCCCCCCCCCccEEEEecCCCcceecchh
Q 005708 459 LKKVRVQDCDELR-----QVFPTNLGKKAAVEEMVPYRKRRDHIHIHATTSTSSPTPSLGNLVSITIRGCGQLRQLFTTS 533 (681)
Q Consensus 459 L~~L~i~~c~~l~-----~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~ 533 (681)
|+.|+++++. ++ ...+..+..+.+|+.|++++|+++.+ +.. .+..+++|+.|++++| +++.+++..
T Consensus 453 L~~L~Ls~N~-l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~---~~~~l~~L~~L~Ls~N-~l~~l~~~~ 523 (844)
T 3j0a_A 453 LEQLFLGENM-LQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL----PPG---VFSHLTALRGLSLNSN-RLTVLSHND 523 (844)
T ss_dssp CCBCEEESCC-CSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTC----CTT---SSSSCCSCSEEEEESC-CCSSCCCCC
T ss_pred cccccCCCCc-cccccccccchhhhcCcccccEEECCCCccccc----Chh---HccchhhhheeECCCC-CCCccChhh
Confidence 6666666543 21 12233455555666666666655444 221 1335556666666655 444443331
Q ss_pred hHhhhccccEeEEcccc
Q 005708 534 MVKSLVRLESLEVSSCP 550 (681)
Q Consensus 534 ~~~~l~~L~~L~i~~C~ 550 (681)
. .++|+.|+++++.
T Consensus 524 ~---~~~L~~L~Ls~N~ 537 (844)
T 3j0a_A 524 L---PANLEILDISRNQ 537 (844)
T ss_dssp C---CSCCCEEEEEEEC
T ss_pred h---hccccEEECCCCc
Confidence 1 1566666666653
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.2e-31 Score=293.41 Aligned_cols=467 Identities=20% Similarity=0.187 Sum_probs=335.6
Q ss_pred CCcccCCC--CCCCCCCccEEEccCCCCccCCCC-C-CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCC
Q 005708 23 GVELKDWP--SINTFEDLTGISLMFNDIHEVPDE-L-ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLP 98 (681)
Q Consensus 23 ~~~~~~~~--~~~~l~~lr~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp 98 (681)
++.+..++ .+..+++|++|++++|.+..++.. + .+++|++|++++|.+..+++..|+++++|++|++++|.+..++
T Consensus 37 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~ 116 (570)
T 2z63_A 37 FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116 (570)
T ss_dssp SCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCST
T ss_pred CCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCC
Confidence 34455444 588899999999999999988654 3 8999999999999999988777999999999999999998887
Q ss_pred c-cccCCCCCcEEEccCCCCCCC--Cc-ccCCCCCccEEEcccCCCccc-chhhcCCccC----cEEeccCCCCCCccCh
Q 005708 99 S-SLSFLINLRTLSLHDCRRFGD--LP-LIGELSLLEILDLSESDVSEI-PVSFGRLGHL----RLLDLTDCVHLELIPR 169 (681)
Q Consensus 99 ~-~i~~l~~L~~L~L~~~~~~~~--l~-~l~~L~~L~~L~l~~~~i~~l-p~~i~~l~~L----~~L~L~~~~~~~~~~~ 169 (681)
. .++++++|++|++++|. +.. +| .++++++|++|++++|.++.+ |..++.+++| ++|++++|. +..+++
T Consensus 117 ~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~-l~~~~~ 194 (570)
T 2z63_A 117 NFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQP 194 (570)
T ss_dssp TCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCC-CCEECT
T ss_pred CccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCC-ceecCH
Confidence 5 69999999999999998 554 56 899999999999999999877 4578888888 899999965 455665
Q ss_pred hhhcCCCCCcEEEcccCcccccccchhhhhhccchhhhcCCCCCcEEEEeCCCCC------CCCCC--CCCC--CccEEE
Q 005708 170 DVLSSLRKLEELYMSHSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKGK------IMPSD--MSFQ--NLTSFS 239 (681)
Q Consensus 170 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~------~~~~~--~~l~--~L~~L~ 239 (681)
..+... +|+.|++++|.. .....+..+..++.++.+.+...... .++.. ..+. .++.+.
T Consensus 195 ~~~~~~-~L~~L~l~~n~~----------~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 263 (570)
T 2z63_A 195 GAFKEI-RLHKLTLRNNFD----------SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263 (570)
T ss_dssp TTTTTC-EEEEEEEESCCS----------CTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEE
T ss_pred HHhccC-cceeEecccccc----------cccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhh
Confidence 545554 899999988753 22345667788888887776543221 11111 1111 122333
Q ss_pred EEecCCcCCCchhHHHHHhhhccccccceeeeccccchh-hhHHHHHHHHhccceeecccccCcccccccccccccCCCc
Q 005708 240 IKIGDLEEDPLSDFIELFLEKFNKRCSRAMGLSQDMRIS-ALHSWIKNLLLRSEILALAEVNDLENMVSDLANDGFNELM 318 (681)
Q Consensus 240 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~ 318 (681)
+..+. .+. ..|.++ ..+++|+.|++.++.. ......+.. + +|+
T Consensus 264 l~~~~-------------------------------~~~~~~~~~~-~~l~~L~~L~l~~~~l-~~l~~~~~~--~-~L~ 307 (570)
T 2z63_A 264 LAYLD-------------------------------YYLDDIIDLF-NCLTNVSSFSLVSVTI-ERVKDFSYN--F-GWQ 307 (570)
T ss_dssp EEETT-------------------------------EEESCSTTTT-GGGTTCSEEEEESCEE-CSCCBCCSC--C-CCS
T ss_pred hhcch-------------------------------hhhhhchhhh-cCcCcccEEEecCccc-hhhhhhhcc--C-Ccc
Confidence 33221 000 011111 2257888888876643 233233332 5 999
Q ss_pred EEEEEecCCceEeeeccccccccccCccceeeecccccccccccCcCCCCcCCCccEEEEeeCCCCCccc-cchHHhhcC
Q 005708 319 FLVIVRCNEMKCLVNSLERTRRVTLHKLEWLAIFLNQNLVEICHGQLPAGCLSNVKRLDVGDCGSMLKIL-PSHLVQSFQ 397 (681)
Q Consensus 319 ~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~l~ 397 (681)
+|++.+| .+..++ ...+++|++|.+.++.... .++...+++|+.|+++++. ++... ....+..++
T Consensus 308 ~L~l~~n-~~~~l~-------~~~l~~L~~L~l~~n~~~~-----~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~ 373 (570)
T 2z63_A 308 HLELVNC-KFGQFP-------TLKLKSLKRLTFTSNKGGN-----AFSEVDLPSLEFLDLSRNG-LSFKGCCSQSDFGTT 373 (570)
T ss_dssp EEEEESC-BCSSCC-------BCBCSSCCEEEEESCBSCC-----BCCCCBCTTCCEEECCSSC-CBEEEEEEHHHHTCS
T ss_pred EEeeccC-cccccC-------cccccccCEEeCcCCcccc-----ccccccCCCCCEEeCcCCc-cCccccccccccccC
Confidence 9999998 444443 3578999999999986322 3334678999999999964 44432 124567899
Q ss_pred CCcEEEEeeccCcceeecccccccccccccccCccCEEeeccCCCcccccCCCCCcccccccceeeeccCCccccccccc
Q 005708 398 NLQRLRVGRCELLESVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVQDCDELRQVFPTN 477 (681)
Q Consensus 398 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~ 477 (681)
+|++|++++|. +..++. .+..+++|+.|.+.++......+. ..+.++++|++|++++|. +....|..
T Consensus 374 ~L~~L~l~~n~-l~~~~~---------~~~~l~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~L~l~~n~-l~~~~~~~ 440 (570)
T 2z63_A 374 SLKYLDLSFNG-VITMSS---------NFLGLEQLEHLDFQHSNLKQMSEF--SVFLSLRNLIYLDISHTH-TRVAFNGI 440 (570)
T ss_dssp CCCEEECCSCS-EEEEEE---------EEETCTTCCEEECTTSEEESCTTS--CTTTTCTTCCEEECTTSC-CEECCTTT
T ss_pred ccCEEECCCCc-cccccc---------cccccCCCCEEEccCCccccccch--hhhhcCCCCCEEeCcCCc-ccccchhh
Confidence 99999999975 344433 256789999999999654322221 124678999999999985 55555788
Q ss_pred cccceeeceeecccccce--eEEEeccCCCCCCCCCCCCccEEEEecCCCcceecchhhHhhhccccEeEEcccccccce
Q 005708 478 LGKKAAVEEMVPYRKRRD--HIHIHATTSTSSPTPSLGNLVSITIRGCGQLRQLFTTSMVKSLVRLESLEVSSCPTLQEI 555 (681)
Q Consensus 478 l~~~~~L~~L~l~~~~l~--~l~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~L~~~ 555 (681)
+..+.+|+.|++++|.+. .+ |.. +..+++|+.|++++|. ++.+.+ ..+..+++|++|++++|. ++.+
T Consensus 441 ~~~l~~L~~L~l~~n~l~~~~~----p~~----~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~ 509 (570)
T 2z63_A 441 FNGLSSLEVLKMAGNSFQENFL----PDI----FTELRNLTFLDLSQCQ-LEQLSP-TAFNSLSSLQVLNMASNQ-LKSV 509 (570)
T ss_dssp TTTCTTCCEEECTTCEEGGGEE----CSC----CTTCTTCCEEECTTSC-CCEECT-TTTTTCTTCCEEECCSSC-CSCC
T ss_pred hhcCCcCcEEECcCCcCccccc----hhh----hhcccCCCEEECCCCc-cccCCh-hhhhcccCCCEEeCCCCc-CCCC
Confidence 899999999999999765 34 433 6689999999999994 666533 236789999999999994 5554
Q ss_pred eccccccccccCCCCcceeccccceeecccCCc
Q 005708 556 IMDDDGGVGLQGASTEKITFPSLFIIQLCHLDS 588 (681)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 588 (681)
+. .....+++|++|++++++-
T Consensus 510 ~~------------~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 510 PD------------GIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp CT------------TTTTTCTTCCEEECCSSCB
T ss_pred CH------------HHhhcccCCcEEEecCCcc
Confidence 21 1234489999999998753
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.1e-31 Score=292.04 Aligned_cols=213 Identities=15% Similarity=0.124 Sum_probs=170.5
Q ss_pred CcccCCC--CCCCCCCccEEEccCCCCccCCCC-C-CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCC--C
Q 005708 24 VELKDWP--SINTFEDLTGISLMFNDIHEVPDE-L-ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFS--L 97 (681)
Q Consensus 24 ~~~~~~~--~~~~l~~lr~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~--l 97 (681)
+.+..++ .+..+++|++|++++|.+..++.. + .+++|++|++++|.+..+++..|+++++|++|++++|.+.. .
T Consensus 36 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 115 (549)
T 2z81_A 36 NKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGV 115 (549)
T ss_dssp SCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCS
T ss_pred CccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccch
Confidence 4444442 578999999999999999987643 3 89999999999999999999888999999999999999964 5
Q ss_pred CccccCCCCCcEEEccCCCCCCCCc--ccCCCCCccEEEcccCCCcc-cchhhcCCccCcEEeccCCCCCCccChhhhcC
Q 005708 98 PSSLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSESDVSE-IPVSFGRLGHLRLLDLTDCVHLELIPRDVLSS 174 (681)
Q Consensus 98 p~~i~~l~~L~~L~L~~~~~~~~l~--~l~~L~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~ 174 (681)
|..++++++|++|++++|..++.+| .++++++|++|++++|.++. .|..++++++|++|+++++. ...+|...+..
T Consensus 116 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~ 194 (549)
T 2z81_A 116 TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE-SAFLLEIFADI 194 (549)
T ss_dssp SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB-STTHHHHHHHS
T ss_pred hhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc-ccccchhhHhh
Confidence 7789999999999999998677776 79999999999999999985 68899999999999999954 56777765678
Q ss_pred CCCCcEEEcccCcccccccchhhhhhccchhhhcCCCCCcEEEEeCCCCCC-----CCCC-CCCCCccEEEEEecCC
Q 005708 175 LRKLEELYMSHSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKGKI-----MPSD-MSFQNLTSFSIKIGDL 245 (681)
Q Consensus 175 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----~~~~-~~l~~L~~L~l~~~~~ 245 (681)
+++|++|++++|...... .........+++|+.|++.++.+.. ++.. ..+++|+.+.+..+..
T Consensus 195 l~~L~~L~L~~n~l~~~~--------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~ 263 (549)
T 2z81_A 195 LSSVRYLELRDTNLARFQ--------FSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263 (549)
T ss_dssp TTTBSEEEEESCBCTTCC--------CCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred cccccEEEccCCcccccc--------ccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccc
Confidence 999999999998652110 0011123457899999999987632 1111 3557788888877654
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.98 E-value=2.6e-31 Score=306.13 Aligned_cols=517 Identities=16% Similarity=0.103 Sum_probs=347.6
Q ss_pred cEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCC-CCC-CccccCCCCCcEEEccCCC
Q 005708 39 TGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRG-FSL-PSSLSFLINLRTLSLHDCR 116 (681)
Q Consensus 39 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~-~~l-p~~i~~l~~L~~L~L~~~~ 116 (681)
+..+.+++.++.+|. ..++|++|++++|.+..+++..|.++++|++|++++|.. ..+ |.+|+++++|++|++++|.
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 568888999999998 568999999999999988666689999999999999955 566 7889999999999999999
Q ss_pred CCCCC-c-ccCCCCCccEEEcccCCCcc-cchh--hcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCccccc
Q 005708 117 RFGDL-P-LIGELSLLEILDLSESDVSE-IPVS--FGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHWQ 191 (681)
Q Consensus 117 ~~~~l-~-~l~~L~~L~~L~l~~~~i~~-lp~~--i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 191 (681)
+..+ | .++++++|++|++++|.++. +|.. ++++++|++|++++|...+..+...++++++|++|++++|.+..
T Consensus 85 -l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~- 162 (844)
T 3j0a_A 85 -IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL- 162 (844)
T ss_dssp -CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC-
T ss_pred -CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe-
Confidence 5554 6 89999999999999999985 5655 89999999999999776554443448999999999999986422
Q ss_pred ccchhhhhhccchhhhcCC--CCCcEEEEeCCCCCC-CCCC-CCCC------CccEEEEEecCCcCCCchhHHHHHhhhc
Q 005708 192 FESEEDARSNAKFIELGAL--SRLTSLHIDIPKGKI-MPSD-MSFQ------NLTSFSIKIGDLEEDPLSDFIELFLEKF 261 (681)
Q Consensus 192 ~~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~-~~~~-~~l~------~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 261 (681)
..+..+..+ ++|+.|++++|.+.. .+.. ..+. .|+.|++..+........ .+....
T Consensus 163 ----------~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~----~~~~~l 228 (844)
T 3j0a_A 163 ----------VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITG----NFSNAI 228 (844)
T ss_dssp ----------CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTS----GGGGTS
T ss_pred ----------eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHH----HHHhhc
Confidence 233445555 899999999988743 2222 2222 388898887644322211 122233
Q ss_pred cccccceeeeccc--------cchhhhHHHHHHH--HhccceeecccccCcccccccccccccCCCcEEEEEecCCceEe
Q 005708 262 NKRCSRAMGLSQD--------MRISALHSWIKNL--LLRSEILALAEVNDLENMVSDLANDGFNELMFLVIVRCNEMKCL 331 (681)
Q Consensus 262 ~~~~l~~l~l~~~--------~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l 331 (681)
....+..+.+... ..+.......... .++++.|++.++.........+ ..+++|+.|++.++ .+..+
T Consensus 229 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n-~i~~~ 305 (844)
T 3j0a_A 229 SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF--ETLKDLKVLNLAYN-KINKI 305 (844)
T ss_dssp CSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS--SSCCCCCEEEEESC-CCCEE
T ss_pred CcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhh--hcCCCCCEEECCCC-cCCCC
Confidence 3445555554411 0111111000000 3578888887665332222222 23788888888888 55555
Q ss_pred eeccccccccccCccceeeecccccccccccCcCCCCcCCCccEEEEeeCCCCCccccchHHhhcCCCcEEEEeeccCcc
Q 005708 332 VNSLERTRRVTLHKLEWLAIFLNQNLVEICHGQLPAGCLSNVKRLDVGDCGSMLKILPSHLVQSFQNLQRLRVGRCELLE 411 (681)
Q Consensus 332 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 411 (681)
... .+..+++|++|+++++. +..+... ....+++|+.|+++++ .+..+.+ ..+..+++|+.|+++++. ++
T Consensus 306 ~~~----~~~~l~~L~~L~Ls~N~-l~~~~~~--~~~~l~~L~~L~L~~N-~i~~~~~-~~~~~l~~L~~L~Ls~N~-l~ 375 (844)
T 3j0a_A 306 ADE----AFYGLDNLQVLNLSYNL-LGELYSS--NFYGLPKVAYIDLQKN-HIAIIQD-QTFKFLEKLQTLDLRDNA-LT 375 (844)
T ss_dssp CTT----TTTTCSSCCEEEEESCC-CSCCCSC--SCSSCTTCCEEECCSC-CCCCCCS-SCSCSCCCCCEEEEETCC-SC
T ss_pred ChH----HhcCCCCCCEEECCCCC-CCccCHH--HhcCCCCCCEEECCCC-CCCccCh-hhhcCCCCCCEEECCCCC-CC
Confidence 433 46677888888888873 3332211 2346788888888885 5665543 334668888888888864 33
Q ss_pred eeecccccccccccccccCccCEEeeccCCCcccccCCCCCcccccccceeeeccCCcccccc-ccccccceeeceeecc
Q 005708 412 SVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVQDCDELRQVF-PTNLGKKAAVEEMVPY 490 (681)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~-~~~l~~~~~L~~L~l~ 490 (681)
.+ ..+++|+.|.+.++. +..++.. ..+++.|+++++. ++... +..+..+++|+.|+++
T Consensus 376 ~i-------------~~~~~L~~L~l~~N~-l~~l~~~------~~~l~~L~ls~N~-l~~l~~~~~~~~l~~L~~L~Ls 434 (844)
T 3j0a_A 376 TI-------------HFIPSIPDIFLSGNK-LVTLPKI------NLTANLIHLSENR-LENLDILYFLLRVPHLQILILN 434 (844)
T ss_dssp CC-------------SSCCSCSEEEEESCC-CCCCCCC------CTTCCEEECCSCC-CCSSTTHHHHTTCTTCCEEEEE
T ss_pred cc-------------cCCCCcchhccCCCC-ccccccc------ccccceeecccCc-cccCchhhhhhcCCccceeeCC
Confidence 22 237888888888754 3444432 3678888888753 43331 2234567789999999
Q ss_pred cccceeEEEeccCCCCCCCCCCCCccEEEEecCCCcceecc----hhhHhhhccccEeEEcccccccceecccccccccc
Q 005708 491 RKRRDHIHIHATTSTSSPTPSLGNLVSITIRGCGQLRQLFT----TSMVKSLVRLESLEVSSCPTLQEIIMDDDGGVGLQ 566 (681)
Q Consensus 491 ~~~l~~l~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~----~~~~~~l~~L~~L~i~~C~~L~~~~~~~~~~~~~~ 566 (681)
+|++..+ +.. .....+++|+.|++++|. +..... ...+..+++|++|++++|. ++.++.
T Consensus 435 ~N~l~~~----~~~--~~~~~~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~--------- 497 (844)
T 3j0a_A 435 QNRFSSC----SGD--QTPSENPSLEQLFLGENM-LQLAWETELCWDVFEGLSHLQVLYLNHNY-LNSLPP--------- 497 (844)
T ss_dssp SCCCCCC----CSS--SSSCSCTTCCBCEEESCC-CSSSCCSCCCSSCSSCBCCEECCCCCHHH-HTTCCT---------
T ss_pred CCccccc----ccc--cccccCCccccccCCCCc-cccccccccchhhhcCcccccEEECCCCc-ccccCh---------
Confidence 9977654 211 112357889999999874 332211 1235678899999999984 655422
Q ss_pred CCCCcceeccccceeecccCCcccccccCCcccccccccccEEEeccCCCceeecCCCCCCccceeeEEE
Q 005708 567 GASTEKITFPSLFIIQLCHLDSLACFFSAGSHATIEFLALAALLIIDCPSMKTFGYGDQLTPKLLKGVLV 636 (681)
Q Consensus 567 ~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~sL~~L~i~~C~~L~~~~~~~~~~~~L~~~~~~ 636 (681)
.....+++|++|+|+++ +|+.++...++ ++|+.|+++++. ++.++.. ..+ +|+.+.+.
T Consensus 498 ---~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~-----~~L~~L~Ls~N~-l~~~~~~-~~~-~L~~l~l~ 555 (844)
T 3j0a_A 498 ---GVFSHLTALRGLSLNSN-RLTVLSHNDLP-----ANLEILDISRNQ-LLAPNPD-VFV-SLSVLDIT 555 (844)
T ss_dssp ---TSSSSCCSCSEEEEESC-CCSSCCCCCCC-----SCCCEEEEEEEC-CCCCCSC-CCS-SCCEEEEE
T ss_pred ---hHccchhhhheeECCCC-CCCccChhhhh-----ccccEEECCCCc-CCCCChh-HhC-CcCEEEec
Confidence 12344889999999986 78888765543 689999998874 4444432 232 56666654
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=2.6e-30 Score=282.52 Aligned_cols=219 Identities=17% Similarity=0.116 Sum_probs=162.5
Q ss_pred cEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCC-CccccCCCCCcEEEccCCCC
Q 005708 39 TGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSL-PSSLSFLINLRTLSLHDCRR 117 (681)
Q Consensus 39 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~~ 117 (681)
+++++++|.++.+|.... ++|++|++++|.+..+++..|.++++|++|++++|++..+ |..++++++|++|++++|.
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~- 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK- 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC-
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc-
Confidence 689999999999997766 8999999999999999887789999999999999999766 7889999999999999998
Q ss_pred CCCCcccCCCCCccEEEcccCCCcc--cchhhcCCccCcEEeccCCCCCCccChhhhcCCCCC--cEEEcccCccccccc
Q 005708 118 FGDLPLIGELSLLEILDLSESDVSE--IPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKL--EELYMSHSFCHWQFE 193 (681)
Q Consensus 118 ~~~l~~l~~L~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~~~~~~ 193 (681)
++.+|.. .+++|++|++++|.++. +|..++++++|++|++++|... . ..+..+++| ++|++++|....
T Consensus 81 l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~-~---~~~~~l~~L~L~~L~l~~n~l~~--- 152 (520)
T 2z7x_B 81 LVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE-K---SSVLPIAHLNISKVLLVLGETYG--- 152 (520)
T ss_dssp CCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC-G---GGGGGGTTSCEEEEEEEECTTTT---
T ss_pred eeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccc-h---hhccccccceeeEEEeecccccc---
Confidence 7788855 89999999999999985 5789999999999999996543 3 226778888 999999886410
Q ss_pred chhhhhhccchhhhcCCCC-CcEEEEeCCCCC-CCCCC--CCCCCccEEEEEecCCcCCCchhHHHHHhhhcccccccee
Q 005708 194 SEEDARSNAKFIELGALSR-LTSLHIDIPKGK-IMPSD--MSFQNLTSFSIKIGDLEEDPLSDFIELFLEKFNKRCSRAM 269 (681)
Q Consensus 194 ~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~-~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 269 (681)
....+..+..+.. ...+++.+|... .++.. ..+++|+.+++..+.... ....+...+......++++.+
T Consensus 153 ------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~l~~l~~L~~L 225 (520)
T 2z7x_B 153 ------EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDN-KCSYFLSILAKLQTNPKLSNL 225 (520)
T ss_dssp ------SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTT-TTHHHHHHHHGGGGCTTCCEE
T ss_pred ------cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccccc-ccceeecchhhhccccchhhc
Confidence 1234555655552 223455555542 23332 567788888888764211 111223333333355666666
Q ss_pred eeccc
Q 005708 270 GLSQD 274 (681)
Q Consensus 270 ~l~~~ 274 (681)
.+.++
T Consensus 226 ~l~~~ 230 (520)
T 2z7x_B 226 TLNNI 230 (520)
T ss_dssp EEEEE
T ss_pred ccccc
Confidence 66554
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=3.8e-31 Score=294.58 Aligned_cols=383 Identities=13% Similarity=0.149 Sum_probs=238.8
Q ss_pred CCccEEEccCCCCc-cCCCCC-CCCCCcEEEccCCCC-------------------------------------------
Q 005708 36 EDLTGISLMFNDIH-EVPDEL-ECPKLQALFLQENSP------------------------------------------- 70 (681)
Q Consensus 36 ~~lr~L~l~~~~~~-~l~~~~-~~~~Lr~L~l~~~~~------------------------------------------- 70 (681)
.+++.|+++++.+. .+|+.+ .+++|++|++++|.+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 57899999999986 566666 899999999988843
Q ss_pred -----------------------------------CCCChHHHhCCCCccEEEecCCCCCC------------------C
Q 005708 71 -----------------------------------LAIPDRFFQGMKDLKVLDLGGIRGFS------------------L 97 (681)
Q Consensus 71 -----------------------------------~~l~~~~~~~l~~Lr~L~L~~~~~~~------------------l 97 (681)
..+|.. |+++++|++|++++|.+.. +
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHH-HhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 135554 5778888888888887765 7
Q ss_pred Ccccc--CCCCCcEEEccCCCCCCCCc-ccCCCCCccEEEcccCC-Cc--ccchhhcCC------ccCcEEeccCCCCCC
Q 005708 98 PSSLS--FLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSESD-VS--EIPVSFGRL------GHLRLLDLTDCVHLE 165 (681)
Q Consensus 98 p~~i~--~l~~L~~L~L~~~~~~~~l~-~l~~L~~L~~L~l~~~~-i~--~lp~~i~~l------~~L~~L~L~~~~~~~ 165 (681)
|..++ ++++|++|++++|...+.+| .++++++|++|++++|. ++ .+|..++++ ++|++|++++|...
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~- 318 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK- 318 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-
T ss_pred chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-
Confidence 87777 78888888888877666777 77788888888888876 76 377777766 78888888875544
Q ss_pred ccCh--hhhcCCCCCcEEEcccCcccccccchhhhhhccchhhhcCCCCCcEEEEeCCCCCCCCCC-CCCCC-ccEEEEE
Q 005708 166 LIPR--DVLSSLRKLEELYMSHSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKGKIMPSD-MSFQN-LTSFSIK 241 (681)
Q Consensus 166 ~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~-L~~L~l~ 241 (681)
.+|. . ++++++|++|++++|.+. | .++ .++.+++|+.|++++|.+..+|.. ..+++ |+.|++.
T Consensus 319 ~ip~~~~-l~~l~~L~~L~L~~N~l~----g-------~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls 385 (636)
T 4eco_A 319 TFPVETS-LQKMKKLGMLECLYNQLE----G-------KLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFA 385 (636)
T ss_dssp SCCCHHH-HTTCTTCCEEECCSCCCE----E-------ECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECC
T ss_pred ccCchhh-hccCCCCCEEeCcCCcCc----c-------chh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEcc
Confidence 7776 4 777888888888777531 1 344 677777788888877777666654 44444 5555555
Q ss_pred ecCCcCCCchhHHHHHhhhccccccceeeeccccchhhhHHHHHHHHhccceeecccccCcccccccccccccCCCcEEE
Q 005708 242 IGDLEEDPLSDFIELFLEKFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNDLENMVSDLANDGFNELMFLV 321 (681)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~ 321 (681)
.+.....+ ..+....+++|++|+
T Consensus 386 ~N~l~~lp---------------------------------------------------------~~~~~~~l~~L~~L~ 408 (636)
T 4eco_A 386 HNKLKYIP---------------------------------------------------------NIFDAKSVSVMSAID 408 (636)
T ss_dssp SSCCSSCC---------------------------------------------------------SCCCTTCSSCEEEEE
T ss_pred CCcCcccc---------------------------------------------------------hhhhhcccCccCEEE
Confidence 44432221 111111233555555
Q ss_pred EEecCCceEeeecccccccc-------ccCccceeeecccccccccccCcCCCCcCCCccEEEEeeCCCCCccccchHHh
Q 005708 322 IVRCNEMKCLVNSLERTRRV-------TLHKLEWLAIFLNQNLVEICHGQLPAGCLSNVKRLDVGDCGSMLKILPSHLVQ 394 (681)
Q Consensus 322 l~~~~~l~~l~~~~~~~~~~-------~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 394 (681)
++++.-...++. ... ..++|++|+++++. ++.+.... ...+++|+.|+++++ .++.++.. ...
T Consensus 409 Ls~N~l~~~~p~-----~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~--~~~l~~L~~L~Ls~N-~l~~i~~~-~~~ 478 (636)
T 4eco_A 409 FSYNEIGSVDGK-----NFDPLDPTPFKGINVSSINLSNNQ-ISKFPKEL--FSTGSPLSSINLMGN-MLTEIPKN-SLK 478 (636)
T ss_dssp CCSSCTTTTTTC-----SSCTTCSSCCCCCCEEEEECCSSC-CCSCCTHH--HHTTCCCSEEECCSS-CCSBCCSS-SSE
T ss_pred CcCCcCCCcchh-----hhcccccccccCCCCCEEECcCCc-cCcCCHHH--HccCCCCCEEECCCC-CCCCcCHH-Hhc
Confidence 555521111111 111 33456666666552 22211100 013466666666663 34444221 111
Q ss_pred -------hcCCCcEEEEeeccCcceeeccccccccccccc--ccCccCEEeeccCCCcccccCCCCCcccccccceeeec
Q 005708 395 -------SFQNLQRLRVGRCELLESVFEIERVNIAKEETE--LFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVQ 465 (681)
Q Consensus 395 -------~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~i~ 465 (681)
++++|+.|++++|. ++.++. .+. .+++|+.|.++++. +..+|.. +..+++|+.|+++
T Consensus 479 ~~~~~~~~l~~L~~L~Ls~N~-l~~lp~---------~~~~~~l~~L~~L~Ls~N~-l~~ip~~---~~~l~~L~~L~Ls 544 (636)
T 4eco_A 479 DENENFKNTYLLTSIDLRFNK-LTKLSD---------DFRATTLPYLVGIDLSYNS-FSKFPTQ---PLNSSTLKGFGIR 544 (636)
T ss_dssp ETTEECTTGGGCCEEECCSSC-CCBCCG---------GGSTTTCTTCCEEECCSSC-CSSCCCG---GGGCSSCCEEECC
T ss_pred cccccccccCCccEEECcCCc-CCccCh---------hhhhccCCCcCEEECCCCC-CCCcChh---hhcCCCCCEEECC
Confidence 23377788877764 334443 222 67788888887754 3334332 4567888888886
Q ss_pred cC-----CccccccccccccceeeceeecccccceeEEEeccCCCCCCCCCCCCccEEEEecCC
Q 005708 466 DC-----DELRQVFPTNLGKKAAVEEMVPYRKRRDHIHIHATTSTSSPTPSLGNLVSITIRGCG 524 (681)
Q Consensus 466 ~c-----~~l~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~i~~c~ 524 (681)
++ +.+....|..+..+.+|+.|++++|.+..+ |.. .+++|+.|++++|+
T Consensus 545 ~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~i----p~~------~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKV----NEK------ITPNISVLDIKDNP 598 (636)
T ss_dssp SCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBC----CSC------CCTTCCEEECCSCT
T ss_pred CCcccccCcccccChHHHhcCCCCCEEECCCCcCCcc----CHh------HhCcCCEEECcCCC
Confidence 53 234444577777888888888888877666 543 33788888888875
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=9.7e-30 Score=277.94 Aligned_cols=449 Identities=14% Similarity=0.128 Sum_probs=298.1
Q ss_pred cEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCC-ccccCCCCCcEEEccCCCCCCCC-c-ccCCCCCccEEEccc
Q 005708 61 QALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLP-SSLSFLINLRTLSLHDCRRFGDL-P-LIGELSLLEILDLSE 137 (681)
Q Consensus 61 r~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~~l-~-~l~~L~~L~~L~l~~ 137 (681)
++|++++|.++.+|..++ ++|++|++++|.+..++ ..+.++++|++|++++|. ++.+ | .++++++|++|++++
T Consensus 3 ~~l~ls~n~l~~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCSSCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCccccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCc-cCCcChHHhhcccCCCEEecCC
Confidence 689999999999998653 89999999999997776 689999999999999999 6666 5 899999999999999
Q ss_pred CCCcccchhhcCCccCcEEeccCCCCCC-ccChhhhcCCCCCcEEEcccCcccccccchhhhhhccchhhhcCCCCC--c
Q 005708 138 SDVSEIPVSFGRLGHLRLLDLTDCVHLE-LIPRDVLSSLRKLEELYMSHSFCHWQFESEEDARSNAKFIELGALSRL--T 214 (681)
Q Consensus 138 ~~i~~lp~~i~~l~~L~~L~L~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L--~ 214 (681)
|.++.+|.. .+++|++|++++|...+ .+|.. ++++++|++|++++|.+. ...+..+++| +
T Consensus 79 N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l~--------------~~~~~~l~~L~L~ 141 (520)
T 2z7x_B 79 NKLVKISCH--PTVNLKHLDLSFNAFDALPICKE-FGNMSQLKFLGLSTTHLE--------------KSSVLPIAHLNIS 141 (520)
T ss_dssp SCCCEEECC--CCCCCSEEECCSSCCSSCCCCGG-GGGCTTCCEEEEEESSCC--------------GGGGGGGTTSCEE
T ss_pred CceeecCcc--ccCCccEEeccCCccccccchhh-hccCCcceEEEecCcccc--------------hhhccccccceee
Confidence 999999987 89999999999976554 35665 899999999999998642 1345666777 9
Q ss_pred EEEEeCCCC--C-CCCCCCCCCCcc--EEEEEecCCcCCCchhHHHHHhhhccccccceeeeccccchhhhHHHHHHHHh
Q 005708 215 SLHIDIPKG--K-IMPSDMSFQNLT--SFSIKIGDLEEDPLSDFIELFLEKFNKRCSRAMGLSQDMRISALHSWIKNLLL 289 (681)
Q Consensus 215 ~L~l~~~~~--~-~~~~~~~l~~L~--~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~ 289 (681)
.|++++|.+ . ..|. .+..++ .+.+.......... ++......++
T Consensus 142 ~L~l~~n~l~~~~~~~~--~l~~l~~~~l~l~l~~n~~~~~-----------------------------~~~~~~~~l~ 190 (520)
T 2z7x_B 142 KVLLVLGETYGEKEDPE--GLQDFNTESLHIVFPTNKEFHF-----------------------------ILDVSVKTVA 190 (520)
T ss_dssp EEEEEECTTTTSSCCTT--TTTTCCEEEEEEECCSSSCCCC-----------------------------CCCCCCTTCS
T ss_pred EEEeecccccccccccc--cccccccceEEEEeccCcchhh-----------------------------hhhhhhhccc
Confidence 999999887 2 2232 233333 44443322110000 0000001134
Q ss_pred ccceeeccccc------CcccccccccccccCCCcEEEEEecCCceEeeeccc--cccccccCccceeeeccccccc-cc
Q 005708 290 RSEILALAEVN------DLENMVSDLANDGFNELMFLVIVRCNEMKCLVNSLE--RTRRVTLHKLEWLAIFLNQNLV-EI 360 (681)
Q Consensus 290 ~L~~L~l~~~~------~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~--~~~~~~~~~L~~L~l~~~~~l~-~~ 360 (681)
+|+.+++.++. .....++.+. .+++|+.|++.++. +. +... .......++|++|++++|. +. .+
T Consensus 191 ~L~~L~l~~n~~~~~~~~~~~~~~~l~--~l~~L~~L~l~~~~-l~---~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~ 263 (520)
T 2z7x_B 191 NLELSNIKCVLEDNKCSYFLSILAKLQ--TNPKLSNLTLNNIE-TT---WNSFIRILQLVWHTTVWYFSISNVK-LQGQL 263 (520)
T ss_dssp EEEECCEEECCSTTTTHHHHHHHHGGG--GCTTCCEEEEEEEE-EE---HHHHHHHHHHHHTSSCSEEEEEEEE-EESCC
T ss_pred ceeeccccccccccccceeecchhhhc--cccchhhccccccc-cC---HHHHHHHHHHhhhCcccEEEeeccc-ccCcc
Confidence 55555554432 0111222232 37888888888772 11 1100 0011124588888888874 22 22
Q ss_pred ccCcCC--CCcCCCccEEEEeeCCCCCccccchHHhhc---CCCcEEEEeeccCcceeecccccccccccccccCccCEE
Q 005708 361 CHGQLP--AGCLSNVKRLDVGDCGSMLKILPSHLVQSF---QNLQRLRVGRCELLESVFEIERVNIAKEETELFSSLEKL 435 (681)
Q Consensus 361 ~~~~~~--~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l---~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L 435 (681)
+...+. .+.++.|+.+++.++.. .+ |...+..+ ++|+.|++++|.... +. ....+++|+.|
T Consensus 264 p~~~~~~~~~~l~~L~~l~l~~n~~--~~-p~~~~~~~~~~~~L~~L~l~~n~l~~-~~----------~~~~l~~L~~L 329 (520)
T 2z7x_B 264 DFRDFDYSGTSLKALSIHQVVSDVF--GF-PQSYIYEIFSNMNIKNFTVSGTRMVH-ML----------CPSKISPFLHL 329 (520)
T ss_dssp CCCCCCCCSCCCCEEEEEEEEECCC--CS-CTHHHHHHHHTCCCSEEEEESSCCCC-CC----------CCSSCCCCCEE
T ss_pred ccchhhcccccCceeEeccccccce--ec-chhhhhcccccCceeEEEcCCCcccc-cc----------chhhCCcccEE
Confidence 111110 14577888888888543 44 32233333 679999999976422 11 12468899999
Q ss_pred eeccCCCcccccCCCCCcccccccceeeeccCCcccc--ccccccccceeeceeeccccccee-EEEeccCCCCCCCCCC
Q 005708 436 TLIDLPRMTDIWKGDTQFVSLHNLKKVRVQDCDELRQ--VFPTNLGKKAAVEEMVPYRKRRDH-IHIHATTSTSSPTPSL 512 (681)
Q Consensus 436 ~l~~~~~L~~~~~~~~~~~~l~~L~~L~i~~c~~l~~--~~~~~l~~~~~L~~L~l~~~~l~~-l~~~~~~~~~~~~~~~ 512 (681)
+++++.--..++. .+..+++|++|++++|. ++. ..|..++.+.+|+.|++++|.+.. + +.. .+..+
T Consensus 330 ~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l----~~~---~~~~l 398 (520)
T 2z7x_B 330 DFSNNLLTDTVFE---NCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNSVSYDE----KKG---DCSWT 398 (520)
T ss_dssp ECCSSCCCTTTTT---TCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSCCBCCG----GGC---SCCCC
T ss_pred EeECCccChhhhh---hhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCcCCccc----ccc---hhccC
Confidence 9998754332332 24578899999999875 443 224567788889999999997765 4 322 13467
Q ss_pred CCccEEEEecCCCcceecchhhHhhh-ccccEeEEcccccccceeccccccccccCCCCcceeccccceeecccCCcccc
Q 005708 513 GNLVSITIRGCGQLRQLFTTSMVKSL-VRLESLEVSSCPTLQEIIMDDDGGVGLQGASTEKITFPSLFIIQLCHLDSLAC 591 (681)
Q Consensus 513 ~~L~~L~i~~c~~l~~l~~~~~~~~l-~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~ 591 (681)
++|++|++++|.--..++ ..+ ++|++|++++|. ++.++ .....+++|++|++++| +++.
T Consensus 399 ~~L~~L~Ls~N~l~~~~~-----~~l~~~L~~L~Ls~N~-l~~ip-------------~~~~~l~~L~~L~L~~N-~l~~ 458 (520)
T 2z7x_B 399 KSLLSLNMSSNILTDTIF-----RCLPPRIKVLDLHSNK-IKSIP-------------KQVVKLEALQELNVASN-QLKS 458 (520)
T ss_dssp TTCCEEECCSSCCCGGGG-----GSCCTTCCEEECCSSC-CCCCC-------------GGGGGCTTCCEEECCSS-CCCC
T ss_pred ccCCEEECcCCCCCcchh-----hhhcccCCEEECCCCc-ccccc-------------hhhhcCCCCCEEECCCC-cCCc
Confidence 899999999885333322 223 689999999984 55442 23345889999999987 6788
Q ss_pred cccCCcccccccccccEEEeccCCC
Q 005708 592 FFSAGSHATIEFLALAALLIIDCPS 616 (681)
Q Consensus 592 ~~~~~~~~~~~~~sL~~L~i~~C~~ 616 (681)
++...+. .+++|++|++.++|-
T Consensus 459 l~~~~~~---~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 459 VPDGIFD---RLTSLQKIWLHTNPW 480 (520)
T ss_dssp CCTTTTT---TCTTCCEEECCSSCB
T ss_pred cCHHHhc---cCCcccEEECcCCCC
Confidence 8765343 478899999988763
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=5.1e-30 Score=290.01 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=26.6
Q ss_pred CCccEEEccCCCCc-cCCCCC-CCCCCcEEEc-cCCC
Q 005708 36 EDLTGISLMFNDIH-EVPDEL-ECPKLQALFL-QENS 69 (681)
Q Consensus 36 ~~lr~L~l~~~~~~-~l~~~~-~~~~Lr~L~l-~~~~ 69 (681)
.++..|+++++.+. .+|+.+ .+++|++|++ ++|.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~ 359 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSE 359 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeeccccc
Confidence 56888999988886 666666 8899999999 6653
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=4.5e-29 Score=280.08 Aligned_cols=124 Identities=27% Similarity=0.347 Sum_probs=63.9
Q ss_pred CccEEEccCCCCccCCCCC--CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCc-cccCCCCCcEEEcc
Q 005708 37 DLTGISLMFNDIHEVPDEL--ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPS-SLSFLINLRTLSLH 113 (681)
Q Consensus 37 ~lr~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~ 113 (681)
++++|++++|.++.++... .+++|++|++++|.+..++++.|.++++|++|+|++|++..+|. +|+++++|++|+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 4555555555555554321 45555555555555555555445555555555555555544442 34555555555555
Q ss_pred CCCCCCCCc--ccCCCCCccEEEcccCCCcc--cchhhcCCccCcEEeccCC
Q 005708 114 DCRRFGDLP--LIGELSLLEILDLSESDVSE--IPVSFGRLGHLRLLDLTDC 161 (681)
Q Consensus 114 ~~~~~~~l~--~l~~L~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~L~~~ 161 (681)
+|. ++.+| .++++++|++|++++|.++. +|..++.+++|++|++++|
T Consensus 133 ~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 133 ETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp TSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence 554 44443 35555555555555555542 3444555555555555553
No 20
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=1.7e-28 Score=275.35 Aligned_cols=526 Identities=15% Similarity=0.106 Sum_probs=293.3
Q ss_pred cEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCC-ccccCCCCCcEEEccCCCC
Q 005708 39 TGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLP-SSLSFLINLRTLSLHDCRR 117 (681)
Q Consensus 39 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~~ 117 (681)
++.+.++..++.+|..+. +++++|++++|.++.+++..|.++++|++|+|++|++..+| .+|+++++|++|+|++|+
T Consensus 34 ~~~~c~~~~l~~vP~~lp-~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~- 111 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP- 111 (635)
T ss_dssp TEEECTTSCCSSCCSSSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-
T ss_pred CEEECCCCCcCccCCCCC-cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-
Confidence 456777778888987663 58999999999999999888999999999999999998875 468999999999999999
Q ss_pred CCCCc--ccCCCCCccEEEcccCCCcccch-hhcCCccCcEEeccCCCCCC-ccChhhhcCCCCCcEEEcccCccccccc
Q 005708 118 FGDLP--LIGELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCVHLE-LIPRDVLSSLRKLEELYMSHSFCHWQFE 193 (681)
Q Consensus 118 ~~~l~--~l~~L~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 193 (681)
++.+| .|+++++|++|++++|+++.+|. .|+++++|++|++++|.... ..|.. ++++++|++|++++|.+.....
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEECG
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh-hccchhhhhhcccCcccccccc
Confidence 77776 68999999999999999999976 58999999999999976543 34544 7899999999999986532111
Q ss_pred chhhhhhccchhhhcCCC-CCcEEEEeCCCCCCCCCC-CCCCCccEEEEEecCCcCCCchhHHHHHhhhccccccceeee
Q 005708 194 SEEDARSNAKFIELGALS-RLTSLHIDIPKGKIMPSD-MSFQNLTSFSIKIGDLEEDPLSDFIELFLEKFNKRCSRAMGL 271 (681)
Q Consensus 194 ~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l 271 (681)
.....+..++ ....++++.+.+..++.. .....+..+.+..... ..+..+..+.......+..+.+
T Consensus 191 --------~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~----~~~~~~~~~~~l~~l~~~~l~~ 258 (635)
T 4g8a_A 191 --------TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFD----SLNVMKTCIQGLAGLEVHRLVL 258 (635)
T ss_dssp --------GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCS----SHHHHHHHHHTTTTCEEEEEEE
T ss_pred --------ccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccc----cccccchhhcCCcccccccccc
Confidence 2233444444 234678888877666554 3334455555544321 1111111111111111111111
Q ss_pred cccc---chhhhHHHHHHHHhccceeecccccCc---ccccccccccccCCCcEEEEEecCCceEeeeccccccccccCc
Q 005708 272 SQDM---RISALHSWIKNLLLRSEILALAEVNDL---ENMVSDLANDGFNELMFLVIVRCNEMKCLVNSLERTRRVTLHK 345 (681)
Q Consensus 272 ~~~~---~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~ 345 (681)
.... .+.............+....+...... ...... ...+.+++.+.+.++. +..+. .......
T Consensus 259 ~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~--~~~~~~l~~l~~~~~~-~~~~~------~~~~~~~ 329 (635)
T 4g8a_A 259 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDL--FNCLTNVSSFSLVSVT-IERVK------DFSYNFG 329 (635)
T ss_dssp ECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTT--TGGGTTCSEEEEESCE-EEECG------GGGSCCC
T ss_pred cccccccccccccccccccccchhhhhhhhhhhcccccchhhh--hhhhcccccccccccc-ccccc------ccccchh
Confidence 1110 000000000001122222222111100 000111 1225566777666652 22221 2344556
Q ss_pred cceeeecccccccccccCcCCCCcCCCccEEEEeeCCCCCccccchHHhhcCCCcEEEEeeccCcceeeccccccccccc
Q 005708 346 LEWLAIFLNQNLVEICHGQLPAGCLSNVKRLDVGDCGSMLKILPSHLVQSFQNLQRLRVGRCELLESVFEIERVNIAKEE 425 (681)
Q Consensus 346 L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 425 (681)
|+.|.+.++. +. .++...++.|+.+.+.+.. ....+. ...+++|+.|+++++........ ...
T Consensus 330 L~~L~l~~~~-~~-----~~~~~~l~~L~~l~l~~n~-~~~~~~---~~~l~~L~~L~ls~n~l~~~~~~-------~~~ 392 (635)
T 4g8a_A 330 WQHLELVNCK-FG-----QFPTLKLKSLKRLTFTSNK-GGNAFS---EVDLPSLEFLDLSRNGLSFKGCC-------SQS 392 (635)
T ss_dssp CSEEEEESCE-ES-----SCCCCBCTTCCEEEEESCC-SCCBCC---CCBCTTCCEEECCSSCCBEEEEC-------CHH
T ss_pred hhhhhccccc-cc-----CcCcccchhhhhccccccc-CCCCcc---cccccccccchhhcccccccccc-------ccc
Confidence 7777777663 11 2233455677777776632 222221 12467777777766433211110 011
Q ss_pred ccccCccCEEeeccCCCcccccCCCCCcccccccceeeeccCCccccccccccccceeeceeecccccceeEEEeccCCC
Q 005708 426 TELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVQDCDELRQVFPTNLGKKAAVEEMVPYRKRRDHIHIHATTST 505 (681)
Q Consensus 426 ~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~ 505 (681)
....++|+.|.+..+.... ++. .+..+++|+.+++.++.......+..+..+..++.+++++|.+..+ ...
T Consensus 393 ~~~~~~L~~L~~~~~~~~~-~~~---~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~----~~~- 463 (635)
T 4g8a_A 393 DFGTISLKYLDLSFNGVIT-MSS---NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA----FNG- 463 (635)
T ss_dssp HHSCSCCCEEECCSCSEEE-ECS---CCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEEC----CTT-
T ss_pred hhhhhhhhhhhcccccccc-ccc---cccccccccchhhhhccccccccccccccccccccccccccccccc----ccc-
Confidence 2344556666665543221 111 1334566666666665544444344455556666666666655443 111
Q ss_pred CCCCCCCCCccEEEEecCCCcceecchhhHhhhccccEeEEcccccccceeccccccccccCCCCcceeccccceeeccc
Q 005708 506 SSPTPSLGNLVSITIRGCGQLRQLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDDGGVGLQGASTEKITFPSLFIIQLCH 585 (681)
Q Consensus 506 ~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 585 (681)
.+..+++|+.|++++|.....+.+ ..+..+++|++|++++|. ++.+.. .....+++|++|+|++
T Consensus 464 --~~~~~~~L~~L~Ls~N~~~~~~~~-~~~~~l~~L~~L~Ls~N~-L~~l~~------------~~f~~l~~L~~L~Ls~ 527 (635)
T 4g8a_A 464 --IFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQCQ-LEQLSP------------TAFNSLSSLQVLNMSH 527 (635)
T ss_dssp --TTTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTSC-CCEECT------------TTTTTCTTCCEEECTT
T ss_pred --ccccchhhhhhhhhhcccccccCc-hhhhhccccCEEECCCCc-cCCcCh------------HHHcCCCCCCEEECCC
Confidence 133556666666666654443322 234556666666666663 444321 1222356666666666
Q ss_pred CCcccccccCCcccccccccccEEEeccCCCceeecCC--CCCCccceeeEE
Q 005708 586 LDSLACFFSAGSHATIEFLALAALLIIDCPSMKTFGYG--DQLTPKLLKGVL 635 (681)
Q Consensus 586 c~~L~~~~~~~~~~~~~~~sL~~L~i~~C~~L~~~~~~--~~~~~~L~~~~~ 635 (681)
+ +|+.++...+. .+++|++|+++++. ++.++.. ..++++|+.+.+
T Consensus 528 N-~l~~l~~~~~~---~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~~L~~L~L 574 (635)
T 4g8a_A 528 N-NFFSLDTFPYK---CLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNL 574 (635)
T ss_dssp S-CCCBCCCGGGT---TCTTCCEEECTTSC-CCBCCSSCTTCCCTTCCEEEC
T ss_pred C-cCCCCChhHHh---CCCCCCEEECCCCc-CCCCCHHHHHhhhCcCCEEEe
Confidence 4 45555543332 35666666666653 3333321 123345555553
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=1.2e-29 Score=287.02 Aligned_cols=293 Identities=13% Similarity=0.133 Sum_probs=171.2
Q ss_pred CCCcEEEccCCCCC-CCChHHHhCCCCccEEEe-cCCCC-CCCCcc----------------------------------
Q 005708 58 PKLQALFLQENSPL-AIPDRFFQGMKDLKVLDL-GGIRG-FSLPSS---------------------------------- 100 (681)
Q Consensus 58 ~~Lr~L~l~~~~~~-~l~~~~~~~l~~Lr~L~L-~~~~~-~~lp~~---------------------------------- 100 (681)
.++..|+|+++.+. .+|+. |+++++|++|+| ++|.+ +..|-.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~-l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDA-IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEECGG-GGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcCchH-HhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 57999999999998 67765 699999999999 77754 111100
Q ss_pred ---------------c--cCCCCCcEEEccC--CCCCCCCc-ccCCCCCccEEEcccCCCcc------------------
Q 005708 101 ---------------L--SFLINLRTLSLHD--CRRFGDLP-LIGELSLLEILDLSESDVSE------------------ 142 (681)
Q Consensus 101 ---------------i--~~l~~L~~L~L~~--~~~~~~l~-~l~~L~~L~~L~l~~~~i~~------------------ 142 (681)
+ .....++.+.+.. |. ++.+| .++++++|++|++++|.++.
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~-L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR-ITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCE-EEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCc-ccchhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 0 1111222222222 33 33377 78888888888888888877
Q ss_pred cchhhc--CCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCc-ccccccchhhhhhccchhhh-------cCCCC
Q 005708 143 IPVSFG--RLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSF-CHWQFESEEDARSNAKFIEL-------GALSR 212 (681)
Q Consensus 143 lp~~i~--~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~l-------~~l~~ 212 (681)
+|..++ ++++|++|++++|...+.+|.. ++++++|+.|++++|. +.. ...|..+ ..+++
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~Ls~N~~lsg----------~~iP~~i~~L~~~~~~l~~ 549 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGISA----------AQLKADWTRLADDEDTGPK 549 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEECTTCTTSCH----------HHHHHHHHHHHHCTTTTTT
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEECcCCCCccc----------ccchHHHHhhhhcccccCC
Confidence 788777 8888888888887777777765 7888888888888775 311 0233333 34458
Q ss_pred CcEEEEeCCCCCCCCC--C-CCCCCccEEEEEecCCcCCCchhHHHHHhhhccccccceeeeccccchhhhHHHHHHHHh
Q 005708 213 LTSLHIDIPKGKIMPS--D-MSFQNLTSFSIKIGDLEEDPLSDFIELFLEKFNKRCSRAMGLSQDMRISALHSWIKNLLL 289 (681)
Q Consensus 213 L~~L~l~~~~~~~~~~--~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~ 289 (681)
|+.|++++|.+..+|. . ..+++|+.|++..+.....+. + ..++
T Consensus 550 L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~---------------------------------~-~~L~ 595 (876)
T 4ecn_A 550 IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA---------------------------------F-GTNV 595 (876)
T ss_dssp CCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCC---------------------------------C-CTTS
T ss_pred ccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchh---------------------------------h-cCCC
Confidence 8888888888877777 3 677778777776654432210 0 0134
Q ss_pred ccceeecccccCcccccccccccccCC-CcEEEEEecCCceEeeeccccccccccCccceeeecccccccccccC---cC
Q 005708 290 RSEILALAEVNDLENMVSDLANDGFNE-LMFLVIVRCNEMKCLVNSLERTRRVTLHKLEWLAIFLNQNLVEICHG---QL 365 (681)
Q Consensus 290 ~L~~L~l~~~~~~~~~~~~l~~~~~~~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~---~~ 365 (681)
+|+.|++.++... .....+. .+++ |++|++++| .+..++.. ......++|+.|++++|. +...... ..
T Consensus 596 ~L~~L~Ls~N~l~-~lp~~l~--~l~~~L~~L~Ls~N-~L~~lp~~---~~~~~~~~L~~L~Ls~N~-l~g~ip~l~~~l 667 (876)
T 4ecn_A 596 KLTDLKLDYNQIE-EIPEDFC--AFTDQVEGLGFSHN-KLKYIPNI---FNAKSVYVMGSVDFSYNK-IGSEGRNISCSM 667 (876)
T ss_dssp EESEEECCSSCCS-CCCTTSC--EECTTCCEEECCSS-CCCSCCSC---CCTTCSSCEEEEECCSSC-TTTTSSSCSSCT
T ss_pred cceEEECcCCccc-cchHHHh--hccccCCEEECcCC-CCCcCchh---hhccccCCCCEEECcCCc-CCCccccchhhh
Confidence 5555665544422 2222222 2566 777777776 34444321 011222347777777663 2111000 00
Q ss_pred CCCcCCCccEEEEeeCCCCCccccchHHhhcCCCcEEEEeec
Q 005708 366 PAGCLSNVKRLDVGDCGSMLKILPSHLVQSFQNLQRLRVGRC 407 (681)
Q Consensus 366 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 407 (681)
..-..++|+.|++++| .++.+ |......+++|+.|++++|
T Consensus 668 ~~~~~~~L~~L~Ls~N-~L~~l-p~~~~~~l~~L~~L~Ls~N 707 (876)
T 4ecn_A 668 DDYKGINASTVTLSYN-EIQKF-PTELFATGSPISTIILSNN 707 (876)
T ss_dssp TTCCCCCEEEEECCSS-CCCSC-CHHHHHTTCCCSEEECCSC
T ss_pred ccccCCCcCEEEccCC-cCCcc-CHHHHccCCCCCEEECCCC
Confidence 0012346666666664 34444 3344445666666666664
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=5.2e-30 Score=285.42 Aligned_cols=294 Identities=16% Similarity=0.198 Sum_probs=175.7
Q ss_pred CCCcEEEccCCCCC-CCChHHHhCCCCccEEEecCCCCCC-------------CCc---------------------ccc
Q 005708 58 PKLQALFLQENSPL-AIPDRFFQGMKDLKVLDLGGIRGFS-------------LPS---------------------SLS 102 (681)
Q Consensus 58 ~~Lr~L~l~~~~~~-~l~~~~~~~l~~Lr~L~L~~~~~~~-------------lp~---------------------~i~ 102 (681)
.+++.|+++++.+. .+|+. |+++++|++|+|++|.+.. +|. .++
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~-l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDA-IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTSCCEEEECGG-GGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCcccCCcCChH-HhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 58999999999988 67765 6999999999999985411 110 000
Q ss_pred -------------------CCCCCcEEEcc--CCCCCCCCc-ccCCCCCccEEEcccCCCcc------------------
Q 005708 103 -------------------FLINLRTLSLH--DCRRFGDLP-LIGELSLLEILDLSESDVSE------------------ 142 (681)
Q Consensus 103 -------------------~l~~L~~L~L~--~~~~~~~l~-~l~~L~~L~~L~l~~~~i~~------------------ 142 (681)
....++.+.+. .|. ++.+| .++++++|++|++++|.++.
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~-l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN-ITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCE-EEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCC-CccCCHHHhcccCCCEEECcCCccccccccccccccccchhccc
Confidence 01112222222 233 44477 78888888888888888887
Q ss_pred cchhhc--CCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCc-ccccccchhhhhhccchhhhcCC------CCC
Q 005708 143 IPVSFG--RLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSF-CHWQFESEEDARSNAKFIELGAL------SRL 213 (681)
Q Consensus 143 lp~~i~--~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~l~~l------~~L 213 (681)
+|..++ ++++|++|++++|...+.+|.. ++++++|++|++++|. +. ....+..++.+ ++|
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~~l~----------~~~lp~~~~~L~~~~~l~~L 307 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGIS----------GEQLKDDWQALADAPVGEKI 307 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEECTTCTTSC----------HHHHHHHHHHHHHSGGGGTC
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEECcCCCCCc----------cccchHHHHhhhccccCCCC
Confidence 888887 8888888888887777777766 7888888888888874 31 11345555554 888
Q ss_pred cEEEEeCCCCCCCCC--C-CCCCCccEEEEEecCCc-CCCchhHHHHHhhhccccccceeeeccccchhhhHHHHHHHHh
Q 005708 214 TSLHIDIPKGKIMPS--D-MSFQNLTSFSIKIGDLE-EDPLSDFIELFLEKFNKRCSRAMGLSQDMRISALHSWIKNLLL 289 (681)
Q Consensus 214 ~~L~l~~~~~~~~~~--~-~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~ 289 (681)
++|++++|.+..+|. . ..+++|+.|++..+... ..+. + ..++
T Consensus 308 ~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~---------------------------------~-~~l~ 353 (636)
T 4eco_A 308 QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA---------------------------------F-GSEI 353 (636)
T ss_dssp CEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCC---------------------------------C-EEEE
T ss_pred CEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhh---------------------------------h-CCCC
Confidence 888888888877777 3 67778888877665442 1110 0 0034
Q ss_pred ccceeecccccCcccccccccccccCC-CcEEEEEecCCceEeeeccccccccccCccceeeecccccccccccCcCC--
Q 005708 290 RSEILALAEVNDLENMVSDLANDGFNE-LMFLVIVRCNEMKCLVNSLERTRRVTLHKLEWLAIFLNQNLVEICHGQLP-- 366 (681)
Q Consensus 290 ~L~~L~l~~~~~~~~~~~~l~~~~~~~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-- 366 (681)
+|+.|++.++... .....+. .+++ |++|+++++ .+..++.. .....+++|++|+++++. +.......++
T Consensus 354 ~L~~L~L~~N~l~-~lp~~l~--~l~~~L~~L~Ls~N-~l~~lp~~---~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~~ 425 (636)
T 4eco_A 354 KLASLNLAYNQIT-EIPANFC--GFTEQVENLSFAHN-KLKYIPNI---FDAKSVSVMSAIDFSYNE-IGSVDGKNFDPL 425 (636)
T ss_dssp EESEEECCSSEEE-ECCTTSE--EECTTCCEEECCSS-CCSSCCSC---CCTTCSSCEEEEECCSSC-TTTTTTCSSCTT
T ss_pred CCCEEECCCCccc-cccHhhh--hhcccCcEEEccCC-cCcccchh---hhhcccCccCEEECcCCc-CCCcchhhhccc
Confidence 5555555444322 2222222 2566 777777776 34444431 012223467777777663 2211100111
Q ss_pred ---CCcCCCccEEEEeeCCCCCccccchHHhhcCCCcEEEEeecc
Q 005708 367 ---AGCLSNVKRLDVGDCGSMLKILPSHLVQSFQNLQRLRVGRCE 408 (681)
Q Consensus 367 ---~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 408 (681)
.-.+++|+.|+++++ .++.+ +...+..+++|++|++++|.
T Consensus 426 ~~~~~~~~~L~~L~Ls~N-~l~~l-p~~~~~~l~~L~~L~Ls~N~ 468 (636)
T 4eco_A 426 DPTPFKGINVSSINLSNN-QISKF-PKELFSTGSPLSSINLMGNM 468 (636)
T ss_dssp CSSCCCCCCEEEEECCSS-CCCSC-CTHHHHTTCCCSEEECCSSC
T ss_pred ccccccCCCCCEEECcCC-ccCcC-CHHHHccCCCCCEEECCCCC
Confidence 003346666666663 34444 33444456666666666653
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=1.3e-27 Score=263.38 Aligned_cols=463 Identities=17% Similarity=0.134 Sum_probs=253.6
Q ss_pred CCCccEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCC-CccccCCCCCcEEEcc
Q 005708 35 FEDLTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSL-PSSLSFLINLRTLSLH 113 (681)
Q Consensus 35 l~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~ 113 (681)
....++++++++.++.+|.... ++|++|++++|.+..+++..|.++++|++|++++|++..+ |..++++++|++|+++
T Consensus 30 ~~~~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVPKDLP-PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp ---CCEEECTTSCCCSCCTTSC-TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred cCCCcEEEcCCCCCccCCCCCC-CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 3445899999999999987664 8999999999999999877789999999999999999766 7789999999999999
Q ss_pred CCCCCCCCcccCCCCCccEEEcccCCCcccc--hhhcCCccCcEEeccCCCCCCccChhhhcCCCCC--cEEEcccCccc
Q 005708 114 DCRRFGDLPLIGELSLLEILDLSESDVSEIP--VSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKL--EELYMSHSFCH 189 (681)
Q Consensus 114 ~~~~~~~l~~l~~L~~L~~L~l~~~~i~~lp--~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~~ 189 (681)
+|. ++.+|.. .+++|++|++++|.++.+| ..++++++|++|++++|... ... +..+++| ++|++++|...
T Consensus 109 ~N~-l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~-~~~---~~~l~~L~L~~L~L~~n~l~ 182 (562)
T 3a79_B 109 HNR-LQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR-QLD---LLPVAHLHLSCILLDLVSYH 182 (562)
T ss_dssp TSC-CCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCC-TTT---TGGGTTSCEEEEEEEESSCC
T ss_pred CCc-CCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccc-cCc---hhhhhhceeeEEEeeccccc
Confidence 999 7788855 8999999999999998764 78999999999999996543 322 4555555 99999888541
Q ss_pred ccccchhhhhhccchhhhcCCCC-CcEEEEeCCCCCC-CCCC--CCCCCccEEEEEecCCcCCCchhHHHHHhhhccccc
Q 005708 190 WQFESEEDARSNAKFIELGALSR-LTSLHIDIPKGKI-MPSD--MSFQNLTSFSIKIGDLEEDPLSDFIELFLEKFNKRC 265 (681)
Q Consensus 190 ~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~-~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (681)
. ....+..+..+.. .-.++++.|.... ++.. ..+++|+.+++..+.. ....+...+......+.
T Consensus 183 ~---------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~---~~~~l~~~~~~l~~l~~ 250 (562)
T 3a79_B 183 I---------KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDE---NCQRLMTFLSELTRGPT 250 (562)
T ss_dssp C---------CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCST---THHHHHHHHHHHHSCSS
T ss_pred c---------cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEeccccccc---ccchHHHHHHHHhccCc
Confidence 0 1123344444431 1134555555432 2221 3456667776665431 00011111111112333
Q ss_pred cceeeeccccchhhhHHHHHHHHhccceeecccccCcccccccc-cccccCCCcEEEEEecCCceEeeeccccccccccC
Q 005708 266 SRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNDLENMVSDL-ANDGFNELMFLVIVRCNEMKCLVNSLERTRRVTLH 344 (681)
Q Consensus 266 l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 344 (681)
++.+.+.. +.........+ .....++|++|++.+|.-...++... .....+
T Consensus 251 L~~L~L~~-------------------------~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~---~~~~~~ 302 (562)
T 3a79_B 251 LLNVTLQH-------------------------IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREE---FTYSET 302 (562)
T ss_dssp CEEEEEEE-------------------------EEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCC---CCCCSC
T ss_pred ceEEEecC-------------------------CcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchh---hhcccc
Confidence 33333333 22111110000 00012355555555552111222110 000013
Q ss_pred ccceeeecccccccccccCcCCCC------cCCCccEEEEeeCCCCCccccchHHhhcCCCcEEEEeeccCcceeecccc
Q 005708 345 KLEWLAIFLNQNLVEICHGQLPAG------CLSNVKRLDVGDCGSMLKILPSHLVQSFQNLQRLRVGRCELLESVFEIER 418 (681)
Q Consensus 345 ~L~~L~l~~~~~l~~~~~~~~~~~------~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 418 (681)
+|+.|.+.++..-. + .+|.. ..++|+.|++.++. +.... ....+++|++|+++++..-..++.
T Consensus 303 ~L~~L~~~~~~~~~-~---~~p~~~~~~~~~~~~L~~L~l~~n~-~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~--- 371 (562)
T 3a79_B 303 ALKSLMIEHVKNQV-F---LFSKEALYSVFAEMNIKMLSISDTP-FIHMV---CPPSPSSFTFLNFTQNVFTDSVFQ--- 371 (562)
T ss_dssp SCCEEEEEEEEECC-C---SSCHHHHHHHHHTCCCSEEEEESSC-CCCCC---CCSSCCCCCEEECCSSCCCTTTTT---
T ss_pred cchheehhhcccce-e---ecChhhhhhhhccCcceEEEccCCC-ccccc---CccCCCCceEEECCCCccccchhh---
Confidence 33333333221100 0 01100 01346666666643 22111 113456666666666543221211
Q ss_pred cccccccccccCccCEEeeccCCCcccccCCCCCcccccccceeeeccCCccccccccccccceeeceeecccccceeEE
Q 005708 419 VNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVQDCDELRQVFPTNLGKKAAVEEMVPYRKRRDHIH 498 (681)
Q Consensus 419 ~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~l~~~~~L~~L~l~~~~l~~l~ 498 (681)
.+..+++|+.|.++++ .++.++..+..+..+++|++|+++++.--..+.+..+..+.+|+.|++++|+++..
T Consensus 372 ------~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~- 443 (562)
T 3a79_B 372 ------GCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS- 443 (562)
T ss_dssp ------TCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGG-
T ss_pred ------hhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcc-
Confidence 2345566666666664 23332211112345566666666665422224333455666667777766655322
Q ss_pred EeccCCCCCCCCCC-CCccEEEEecCCCcceecchhhHhhhccccEeEEcccccccceeccccccccccCCCCcceeccc
Q 005708 499 IHATTSTSSPTPSL-GNLVSITIRGCGQLRQLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDDGGVGLQGASTEKITFPS 577 (681)
Q Consensus 499 ~~~~~~~~~~~~~~-~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~~l~~ 577 (681)
.. ..+ ++|+.|++++| .++.++.. +..+++|++|++++|. ++.++.. ....+++
T Consensus 444 ---~~------~~l~~~L~~L~L~~N-~l~~ip~~--~~~l~~L~~L~L~~N~-l~~l~~~------------~~~~l~~ 498 (562)
T 3a79_B 444 ---VF------RCLPPKVKVLDLHNN-RIMSIPKD--VTHLQALQELNVASNQ-LKSVPDG------------VFDRLTS 498 (562)
T ss_dssp ---GG------SSCCTTCSEEECCSS-CCCCCCTT--TTSSCCCSEEECCSSC-CCCCCTT------------STTTCTT
T ss_pred ---hh------hhhcCcCCEEECCCC-cCcccChh--hcCCCCCCEEECCCCC-CCCCCHH------------HHhcCCC
Confidence 11 122 56777777666 45555433 2366777777777764 4443221 1233667
Q ss_pred cceeecccCCc
Q 005708 578 LFIIQLCHLDS 588 (681)
Q Consensus 578 L~~L~l~~c~~ 588 (681)
|+.|+++++|-
T Consensus 499 L~~L~l~~N~~ 509 (562)
T 3a79_B 499 LQYIWLHDNPW 509 (562)
T ss_dssp CCCEECCSCCB
T ss_pred CCEEEecCCCc
Confidence 77777776653
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=7.2e-28 Score=265.30 Aligned_cols=455 Identities=15% Similarity=0.154 Sum_probs=291.2
Q ss_pred CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCC-ccccCCCCCcEEEccCCCCCCCC-c-ccCCCCCccE
Q 005708 56 ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLP-SSLSFLINLRTLSLHDCRRFGDL-P-LIGELSLLEI 132 (681)
Q Consensus 56 ~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~~l-~-~l~~L~~L~~ 132 (681)
.+...++++++++.++.+|..+ .++|++|++++|.+..++ ..++++++|++|++++|. ++.+ | .++++++|++
T Consensus 29 ~~~~~~~l~ls~~~L~~ip~~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 29 SNELESMVDYSNRNLTHVPKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp ----CCEEECTTSCCCSCCTTS---CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC-CCEECTTTTTTCTTCCE
T ss_pred ccCCCcEEEcCCCCCccCCCCC---CCCcCEEECCCCCccccChhhhccCCCccEEECCCCC-CCcCCHHHhCCCCCCCE
Confidence 5566699999999999999865 389999999999998776 689999999999999998 6666 4 7999999999
Q ss_pred EEcccCCCcccchhhcCCccCcEEeccCCCCCCccC--hhhhcCCCCCcEEEcccCcccccccchhhhhhccchhhhcCC
Q 005708 133 LDLSESDVSEIPVSFGRLGHLRLLDLTDCVHLELIP--RDVLSSLRKLEELYMSHSFCHWQFESEEDARSNAKFIELGAL 210 (681)
Q Consensus 133 L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l 210 (681)
|++++|.++.+|.. .+++|++|++++|. +..++ .. ++++++|++|++++|.+.. .....+..+
T Consensus 105 L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~-~~~l~~L~~L~L~~n~l~~-----------~~~~~l~~L 169 (562)
T 3a79_B 105 LDVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKE-FGNLTKLTFLGLSAAKFRQ-----------LDLLPVAHL 169 (562)
T ss_dssp EECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGG-GGGCTTCCEEEEECSBCCT-----------TTTGGGTTS
T ss_pred EECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHh-hcccCcccEEecCCCcccc-----------Cchhhhhhc
Confidence 99999999999987 89999999999966 44544 44 8999999999999986421 122333334
Q ss_pred CCCcEEEEeCCCC--CCCCCCCCCCCc--cEEEEEecC--CcCCCchhHHHHHhhhccccccceeeeccccchhhhHHHH
Q 005708 211 SRLTSLHIDIPKG--KIMPSDMSFQNL--TSFSIKIGD--LEEDPLSDFIELFLEKFNKRCSRAMGLSQDMRISALHSWI 284 (681)
Q Consensus 211 ~~L~~L~l~~~~~--~~~~~~~~l~~L--~~L~l~~~~--~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 284 (681)
+|+.|++++|.+ ...... .+..+ +.+.+.... ....... .....
T Consensus 170 -~L~~L~L~~n~l~~~~~~~~-~l~~l~~~~l~l~l~~n~~~~~~~~------~~~~~---------------------- 219 (562)
T 3a79_B 170 -HLSCILLDLVSYHIKGGETE-SLQIPNTTVLHLVFHPNSLFSVQVN------MSVNA---------------------- 219 (562)
T ss_dssp -CEEEEEEEESSCCCCSSSCC-EEEECCEEEEEEEECSSSCCCCCCE------EEESS----------------------
T ss_pred -eeeEEEeecccccccccCcc-cccccCcceEEEEecCccchhhhhh------hcccc----------------------
Confidence 449999999877 333222 12222 344443221 1110000 00001
Q ss_pred HHHHhccceeeccccc----CcccccccccccccCCCcEEEEEecCCceEeeeccc--cccccccCccceeeeccccccc
Q 005708 285 KNLLLRSEILALAEVN----DLENMVSDLANDGFNELMFLVIVRCNEMKCLVNSLE--RTRRVTLHKLEWLAIFLNQNLV 358 (681)
Q Consensus 285 ~~~~~~L~~L~l~~~~----~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~--~~~~~~~~~L~~L~l~~~~~l~ 358 (681)
+++|+.+++.++. ......+.+ ..+++|+.+++.++. + ..... .......++|++|++++|.--.
T Consensus 220 ---l~~L~~L~l~~n~~~~~~l~~~~~~l--~~l~~L~~L~L~~~~-l---~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 290 (562)
T 3a79_B 220 ---LGHLQLSNIKLNDENCQRLMTFLSEL--TRGPTLLNVTLQHIE-T---TWKCSVKLFQFFWPRPVEYLNIYNLTITE 290 (562)
T ss_dssp ---EEEEEEEEEECCSTTHHHHHHHHHHH--HSCSSCEEEEEEEEE-E---CHHHHHHHHHHHTTSSEEEEEEEEEEECS
T ss_pred ---cceEEEecccccccccchHHHHHHHH--hccCcceEEEecCCc-C---cHHHHHHHHHhhhcccccEEEEeccEeec
Confidence 2344444443321 111111222 236788888888762 1 11000 0011223589999999885211
Q ss_pred ccccCcCCCCcCCCccEEEEeeCCCCC-ccccchHHhh---cCCCcEEEEeeccCcceeecccccccccccccccCccCE
Q 005708 359 EICHGQLPAGCLSNVKRLDVGDCGSML-KILPSHLVQS---FQNLQRLRVGRCELLESVFEIERVNIAKEETELFSSLEK 434 (681)
Q Consensus 359 ~~~~~~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~---l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~ 434 (681)
.++...+.. ..++|+.|.+.+...-. .+ |...... ..+|++|+++++.... +. ....+++|+.
T Consensus 291 ~ip~~~~~~-~~~~L~~L~~~~~~~~~~~~-p~~~~~~~~~~~~L~~L~l~~n~~~~-~~----------~~~~l~~L~~ 357 (562)
T 3a79_B 291 RIDREEFTY-SETALKSLMIEHVKNQVFLF-SKEALYSVFAEMNIKMLSISDTPFIH-MV----------CPPSPSSFTF 357 (562)
T ss_dssp CCCCCCCCC-CSCSCCEEEEEEEEECCCSS-CHHHHHHHHHTCCCSEEEEESSCCCC-CC----------CCSSCCCCCE
T ss_pred cccchhhhc-ccccchheehhhcccceeec-ChhhhhhhhccCcceEEEccCCCccc-cc----------CccCCCCceE
Confidence 221111110 11455555554432111 22 3222222 2679999999976422 11 1246889999
Q ss_pred EeeccCCCcccccCCCCCcccccccceeeeccCCcccccc--ccccccceeeceeeccccccee-EEEeccCCCCCCCCC
Q 005708 435 LTLIDLPRMTDIWKGDTQFVSLHNLKKVRVQDCDELRQVF--PTNLGKKAAVEEMVPYRKRRDH-IHIHATTSTSSPTPS 511 (681)
Q Consensus 435 L~l~~~~~L~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~--~~~l~~~~~L~~L~l~~~~l~~-l~~~~~~~~~~~~~~ 511 (681)
|+++++.--..++. .+..+++|++|+++++ .++.+. |..+..+.+|+.|++++|.++. + +.. .+..
T Consensus 358 L~l~~n~l~~~~~~---~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~----~~~---~~~~ 426 (562)
T 3a79_B 358 LNFTQNVFTDSVFQ---GCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHA----YDR---TCAW 426 (562)
T ss_dssp EECCSSCCCTTTTT---TCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCC----SSC---CCCC
T ss_pred EECCCCccccchhh---hhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCcc----Chh---hhcC
Confidence 99998754332332 2467899999999986 455432 4567888899999999997765 4 322 2446
Q ss_pred CCCccEEEEecCCCcceecchhhHhhh-ccccEeEEcccccccceeccccccccccCCCCcceeccccceeecccCCccc
Q 005708 512 LGNLVSITIRGCGQLRQLFTTSMVKSL-VRLESLEVSSCPTLQEIIMDDDGGVGLQGASTEKITFPSLFIIQLCHLDSLA 590 (681)
Q Consensus 512 ~~~L~~L~i~~c~~l~~l~~~~~~~~l-~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~ 590 (681)
+++|++|++++|.--..+ ...+ ++|++|++++| +++.++ .+...+++|++|+++++ +++
T Consensus 427 l~~L~~L~l~~n~l~~~~-----~~~l~~~L~~L~L~~N-~l~~ip-------------~~~~~l~~L~~L~L~~N-~l~ 486 (562)
T 3a79_B 427 AESILVLNLSSNMLTGSV-----FRCLPPKVKVLDLHNN-RIMSIP-------------KDVTHLQALQELNVASN-QLK 486 (562)
T ss_dssp CTTCCEEECCSSCCCGGG-----GSSCCTTCSEEECCSS-CCCCCC-------------TTTTSSCCCSEEECCSS-CCC
T ss_pred cccCCEEECCCCCCCcch-----hhhhcCcCCEEECCCC-cCcccC-------------hhhcCCCCCCEEECCCC-CCC
Confidence 789999999998633322 2334 68999999998 466542 23335899999999986 688
Q ss_pred ccccCCcccccccccccEEEeccCC
Q 005708 591 CFFSAGSHATIEFLALAALLIIDCP 615 (681)
Q Consensus 591 ~~~~~~~~~~~~~~sL~~L~i~~C~ 615 (681)
.++...+. .+++|+.|++.++|
T Consensus 487 ~l~~~~~~---~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 487 SVPDGVFD---RLTSLQYIWLHDNP 508 (562)
T ss_dssp CCCTTSTT---TCTTCCCEECCSCC
T ss_pred CCCHHHHh---cCCCCCEEEecCCC
Confidence 88865343 47899999998876
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=1.6e-27 Score=256.17 Aligned_cols=187 Identities=20% Similarity=0.232 Sum_probs=144.0
Q ss_pred CCCCCccEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEEEc
Q 005708 33 NTFEDLTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLRTLSL 112 (681)
Q Consensus 33 ~~l~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L 112 (681)
..+++++.|++.++.+..++....+++|++|++++|.+..+++ |..+++|++|++++|.+..++. ++++++|++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL 119 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred hHhccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEEC
Confidence 3456888999999888888765588899999999999888876 7889999999999998887776 888999999999
Q ss_pred cCCCCCCCCcccCCCCCccEEEcccCCCcccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcccccc
Q 005708 113 HDCRRFGDLPLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHWQF 192 (681)
Q Consensus 113 ~~~~~~~~l~~l~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 192 (681)
++|. ++.++.++++++|++|++++|.+..+| .++.+++|++|++.+ . ...++. +.++++|++|++++|..
T Consensus 120 ~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~-~-~~~~~~--~~~l~~L~~L~l~~n~l---- 189 (466)
T 1o6v_A 120 FNNQ-ITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN-Q-VTDLKP--LANLTTLERLDISSNKV---- 189 (466)
T ss_dssp CSSC-CCCCGGGTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE-S-CCCCGG--GTTCTTCCEEECCSSCC----
T ss_pred CCCC-CCCChHHcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC-c-ccCchh--hccCCCCCEEECcCCcC----
Confidence 9887 777777888999999999998888876 488889999998864 2 334443 78888999999888754
Q ss_pred cchhhhhhccchhhhcCCCCCcEEEEeCCCCCCCCCCCCCCCccEEEEE
Q 005708 193 ESEEDARSNAKFIELGALSRLTSLHIDIPKGKIMPSDMSFQNLTSFSIK 241 (681)
Q Consensus 193 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~ 241 (681)
..+..+..+++|++|++++|.+...+....+++|+.|++.
T Consensus 190 ---------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~ 229 (466)
T 1o6v_A 190 ---------SDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLN 229 (466)
T ss_dssp ---------CCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECC
T ss_pred ---------CCChhhccCCCCCEEEecCCcccccccccccCCCCEEECC
Confidence 1224577888888888888776544333334444444443
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=5.4e-26 Score=244.15 Aligned_cols=199 Identities=22% Similarity=0.297 Sum_probs=164.1
Q ss_pred eCCcccCCCCCCCCCCccEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccc
Q 005708 22 AGVELKDWPSINTFEDLTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSL 101 (681)
Q Consensus 22 ~~~~~~~~~~~~~l~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i 101 (681)
.+..+..+|.+..+++|++|++++|.+..++....+++|++|++++|.+..+++ |+++++|++|++++|.+..++. +
T Consensus 54 ~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~ 130 (466)
T 1o6v_A 54 DRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-L 130 (466)
T ss_dssp CSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-G
T ss_pred CCCCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH-H
Confidence 345577888899999999999999999988775599999999999999998887 7999999999999999988876 8
Q ss_pred cCCCCCcEEEccCCCCCCCCcccCCCCCccEEEcccCCCcccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEE
Q 005708 102 SFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEEL 181 (681)
Q Consensus 102 ~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L 181 (681)
+++++|++|++++|. +..++.++++++|++|++++ .+..++. +.++++|++|++++|. +..++. +.++++|++|
T Consensus 131 ~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~-~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L 204 (466)
T 1o6v_A 131 KNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGN-QVTDLKP-LANLTTLERLDISSNK-VSDISV--LAKLTNLESL 204 (466)
T ss_dssp TTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEE-SCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEE
T ss_pred cCCCCCCEEECCCCc-cCCChhhccCCcccEeecCC-cccCchh-hccCCCCCEEECcCCc-CCCChh--hccCCCCCEE
Confidence 999999999999998 88888999999999999974 5555554 8999999999999965 555654 8999999999
Q ss_pred EcccCcccccccchhhhhhccchhhhcCCCCCcEEEEeCCCCCCCCCCCCCCCccEEEEEe
Q 005708 182 YMSHSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKGKIMPSDMSFQNLTSFSIKI 242 (681)
Q Consensus 182 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~ 242 (681)
++++|... ....++.+++|++|++++|.+..++....+++|+.|++.+
T Consensus 205 ~l~~n~l~-------------~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~ 252 (466)
T 1o6v_A 205 IATNNQIS-------------DITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLAN 252 (466)
T ss_dssp ECCSSCCC-------------CCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCS
T ss_pred EecCCccc-------------ccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCC
Confidence 99998642 1223778999999999999876554333444444444433
No 27
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=9.3e-26 Score=232.88 Aligned_cols=151 Identities=18% Similarity=0.219 Sum_probs=84.7
Q ss_pred CCCCCCCCccEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcE
Q 005708 30 PSINTFEDLTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLRT 109 (681)
Q Consensus 30 ~~~~~l~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~ 109 (681)
+.+..++++++|+++++.+..++....+++|++|++++|.+..++. |..+++|++|++++|.+..+| .++++++|++
T Consensus 38 ~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 38 VTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRE 114 (347)
T ss_dssp ECHHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred ccchhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCE
Confidence 3444555666666666666655543355666666666666665554 456666666666666655544 3556666666
Q ss_pred EEccCCCCCCCCcccCCCCCccEEEcccCCCcccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCc
Q 005708 110 LSLHDCRRFGDLPLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSF 187 (681)
Q Consensus 110 L~L~~~~~~~~l~~l~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 187 (681)
|++++|. +..++.+.++++|++|++++|.....+..+..+++|++|++++|. +..++. +.++++|++|++++|.
T Consensus 115 L~l~~n~-i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 115 LYLNEDN-ISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp EECTTSC-CCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECTTSC
T ss_pred EECcCCc-ccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEEccCCc
Confidence 6666655 555555556666666666665333223335556666666665543 223333 4555556666655553
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=2.1e-26 Score=244.98 Aligned_cols=147 Identities=20% Similarity=0.135 Sum_probs=58.4
Q ss_pred CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCC-CCCCccccCCCCC-------------cEEEccCCCCCCCC
Q 005708 56 ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRG-FSLPSSLSFLINL-------------RTLSLHDCRRFGDL 121 (681)
Q Consensus 56 ~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~-~~lp~~i~~l~~L-------------~~L~L~~~~~~~~l 121 (681)
..++|++|++++|.+..+|.+ ++++++|++|++++|.+ +.+|.+++++.+| ++|++++|. ++.+
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~-i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~l 86 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVE-AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSL 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCC
T ss_pred ccccchhhhcccCchhhCChh-HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccC
Confidence 344555555555555555544 35555555555555555 3555555555443 555555555 4444
Q ss_pred cccCCCCCccEEEcccCCCcccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcccccccchhhhhhc
Q 005708 122 PLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHWQFESEEDARSN 201 (681)
Q Consensus 122 ~~l~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 201 (681)
|.+ .++|++|++++|.++.+|.. +++|++|++++|. +..++. + .++|++|++++|.+.
T Consensus 87 p~~--~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~-l~~l~~--~--~~~L~~L~L~~n~l~------------ 144 (454)
T 1jl5_A 87 PEL--PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN-LKALSD--L--PPLLEYLGVSNNQLE------------ 144 (454)
T ss_dssp CSC--CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC-CSCCCS--C--CTTCCEEECCSSCCS------------
T ss_pred CCC--cCCCCEEEccCCcCCccccc---cCCCcEEECCCCc-cCcccC--C--CCCCCEEECcCCCCC------------
Confidence 432 24555555555555555432 2455555555532 223322 1 135555555555321
Q ss_pred cchhhhcCCCCCcEEEEeCCCCCCCC
Q 005708 202 AKFIELGALSRLTSLHIDIPKGKIMP 227 (681)
Q Consensus 202 ~~~~~l~~l~~L~~L~l~~~~~~~~~ 227 (681)
..+ +++.+++|++|++++|.+..+|
T Consensus 145 ~lp-~~~~l~~L~~L~l~~N~l~~lp 169 (454)
T 1jl5_A 145 KLP-ELQNSSFLKIIDVDNNSLKKLP 169 (454)
T ss_dssp SCC-CCTTCTTCCEEECCSSCCSCCC
T ss_pred CCc-ccCCCCCCCEEECCCCcCcccC
Confidence 122 3555555555555555544443
No 29
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=2.4e-25 Score=229.83 Aligned_cols=304 Identities=21% Similarity=0.278 Sum_probs=211.0
Q ss_pred CCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEEEccCCCCCCCCcccCCCCCccEEE
Q 005708 55 LECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILD 134 (681)
Q Consensus 55 ~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~ 134 (681)
..+++|++|+++++.+..++. +..+++|++|++++|.+..++. ++.+++|++|++++|. ++.++.++++++|++|+
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~~~~~l~~L~~L~ 116 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDISALQNLTNLRELY 116 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEEE
T ss_pred hhcccccEEEEeCCccccchh--hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc-ccCchHHcCCCcCCEEE
Confidence 377999999999999999876 7899999999999999988887 8999999999999998 88889999999999999
Q ss_pred cccCCCcccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcccccccchhhhhhccchhhhcCCCCCc
Q 005708 135 LSESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHWQFESEEDARSNAKFIELGALSRLT 214 (681)
Q Consensus 135 l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 214 (681)
+++|.+..+|. +..+++|++|++++|.....++. +.++++|++|++++|... ....+..+++|+
T Consensus 117 l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~-------------~~~~~~~l~~L~ 180 (347)
T 4fmz_A 117 LNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVK-------------DVTPIANLTDLY 180 (347)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCC-------------CCGGGGGCTTCS
T ss_pred CcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcC-------------CchhhccCCCCC
Confidence 99999998877 89999999999999877777665 899999999999988641 222388999999
Q ss_pred EEEEeCCCCCCCCCCCCCCCccEEEEEecCCcCCCchhHHHHHhhhccccccceeeeccccchhhhHHHHHHHHhcccee
Q 005708 215 SLHIDIPKGKIMPSDMSFQNLTSFSIKIGDLEEDPLSDFIELFLEKFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEIL 294 (681)
Q Consensus 215 ~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L 294 (681)
+|++++|.+..++....+++|+.+.+..+.....+.
T Consensus 181 ~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------------------------------------- 216 (347)
T 4fmz_A 181 SLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP-------------------------------------------- 216 (347)
T ss_dssp EEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--------------------------------------------
T ss_pred EEEccCCcccccccccCCCccceeecccCCCCCCch--------------------------------------------
Confidence 999999988777666667777777776654422210
Q ss_pred ecccccCcccccccccccccCCCcEEEEEecCCceEeeeccccccccccCccceeeecccccccccccCcCCCCcCCCcc
Q 005708 295 ALAEVNDLENMVSDLANDGFNELMFLVIVRCNEMKCLVNSLERTRRVTLHKLEWLAIFLNQNLVEICHGQLPAGCLSNVK 374 (681)
Q Consensus 295 ~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~ 374 (681)
+ ..+++|++|++.+| .+..++ ....+++|++|++++| .+..+ .....+++|+
T Consensus 217 --------------~--~~~~~L~~L~l~~n-~l~~~~------~~~~l~~L~~L~l~~n-~l~~~----~~~~~l~~L~ 268 (347)
T 4fmz_A 217 --------------V--ANMTRLNSLKIGNN-KITDLS------PLANLSQLTWLEIGTN-QISDI----NAVKDLTKLK 268 (347)
T ss_dssp --------------G--GGCTTCCEEECCSS-CCCCCG------GGTTCTTCCEEECCSS-CCCCC----GGGTTCTTCC
T ss_pred --------------h--hcCCcCCEEEccCC-ccCCCc------chhcCCCCCEEECCCC-ccCCC----hhHhcCCCcC
Confidence 1 12445555555554 222221 1334455555555554 22221 1123455666
Q ss_pred EEEEeeCCCCCccccchHHhhcCCCcEEEEeeccCcceeecccccccccccccccCccCEEeeccCCCcccccCCCCCcc
Q 005708 375 RLDVGDCGSMLKILPSHLVQSFQNLQRLRVGRCELLESVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFV 454 (681)
Q Consensus 375 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~ 454 (681)
.|++++| .++.+ ..+..+++|+.|++++|......+. .+..+++|+.|.+++|+ +..++. +.
T Consensus 269 ~L~l~~n-~l~~~---~~~~~l~~L~~L~L~~n~l~~~~~~---------~l~~l~~L~~L~L~~n~-l~~~~~----~~ 330 (347)
T 4fmz_A 269 MLNVGSN-QISDI---SVLNNLSQLNSLFLNNNQLGNEDME---------VIGGLTNLTTLFLSQNH-ITDIRP----LA 330 (347)
T ss_dssp EEECCSS-CCCCC---GGGGGCTTCSEEECCSSCCCGGGHH---------HHHTCTTCSEEECCSSS-CCCCGG----GG
T ss_pred EEEccCC-ccCCC---hhhcCCCCCCEEECcCCcCCCcChh---------HhhccccCCEEEccCCc-cccccC----hh
Confidence 6666664 34443 1244566666666666643222111 23456667777776665 333221 34
Q ss_pred cccccceeeeccCC
Q 005708 455 SLHNLKKVRVQDCD 468 (681)
Q Consensus 455 ~l~~L~~L~i~~c~ 468 (681)
.+++|++|++++|+
T Consensus 331 ~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 331 SLSKMDSADFANQV 344 (347)
T ss_dssp GCTTCSEESSSCC-
T ss_pred hhhccceeehhhhc
Confidence 66777777777663
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=2.7e-25 Score=236.69 Aligned_cols=168 Identities=17% Similarity=0.147 Sum_probs=114.7
Q ss_pred CCCCCCCccEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEE
Q 005708 31 SINTFEDLTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLRTL 110 (681)
Q Consensus 31 ~~~~l~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L 110 (681)
.+..+++|++|++++|.+..+|....+++|++|++++|.+..++ ++.+++|++|++++|.+..+| ++++++|++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred ChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEE
Confidence 45566777777777777777664446777777777777777765 567777777777777776664 6777777777
Q ss_pred EccCCCCCCCCcccCCCCCccEEEcccCCCcccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcccc
Q 005708 111 SLHDCRRFGDLPLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHW 190 (681)
Q Consensus 111 ~L~~~~~~~~l~~l~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 190 (681)
++++|. ++.+| ++++++|++|++++|.++.+| ++++++|++|++++|..++.++ ++.+++|++|++++|.+.
T Consensus 112 ~L~~N~-l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~- 183 (457)
T 3bz5_A 112 NCDTNK-LTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKIT- 183 (457)
T ss_dssp ECCSSC-CSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCC-
T ss_pred ECCCCc-CCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccc-
Confidence 777776 55565 677777777777777777664 6677777777777766665553 566777777777766431
Q ss_pred cccchhhhhhccchhhhcCCCCCcEEEEeCCCCC
Q 005708 191 QFESEEDARSNAKFIELGALSRLTSLHIDIPKGK 224 (681)
Q Consensus 191 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 224 (681)
..+ ++.+++|+.|++++|.+.
T Consensus 184 -----------~l~--l~~l~~L~~L~l~~N~l~ 204 (457)
T 3bz5_A 184 -----------ELD--VSQNKLLNRLNCDTNNIT 204 (457)
T ss_dssp -----------CCC--CTTCTTCCEEECCSSCCS
T ss_pred -----------eec--cccCCCCCEEECcCCcCC
Confidence 111 555666666666666543
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=5.1e-25 Score=236.34 Aligned_cols=111 Identities=17% Similarity=0.191 Sum_probs=63.1
Q ss_pred cCCCccEEEEeeCCCCCccccchHHhhcCCCcEEEEeeccCcceeecccccccccccccccCccCEEeeccCCCcccccC
Q 005708 369 CLSNVKRLDVGDCGSMLKILPSHLVQSFQNLQRLRVGRCELLESVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWK 448 (681)
Q Consensus 369 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~ 448 (681)
.+++|+.|+++++ .++.+.+ ..+..+++|++|++++|.. ..++. ..+..+++|+.|+++++.. ..+..
T Consensus 297 ~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~l-~~~~~--------~~~~~l~~L~~L~Ls~N~l-~~~~~ 364 (455)
T 3v47_A 297 HFTDLEQLTLAQN-EINKIDD-NAFWGLTHLLKLNLSQNFL-GSIDS--------RMFENLDKLEVLDLSYNHI-RALGD 364 (455)
T ss_dssp TCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSCC-CEECG--------GGGTTCTTCCEEECCSSCC-CEECT
T ss_pred cCCCCCEEECCCC-cccccCh-hHhcCcccCCEEECCCCcc-CCcCh--------hHhcCcccCCEEECCCCcc-cccCh
Confidence 4455666666553 3333322 2234566666666666532 32211 1234566777777766542 33321
Q ss_pred CCCCcccccccceeeeccCCccccccccccccceeeceeecccccc
Q 005708 449 GDTQFVSLHNLKKVRVQDCDELRQVFPTNLGKKAAVEEMVPYRKRR 494 (681)
Q Consensus 449 ~~~~~~~l~~L~~L~i~~c~~l~~~~~~~l~~~~~L~~L~l~~~~l 494 (681)
..+..+++|++|+++++ .++.+.+..++.+.+|+.|++++|.+
T Consensus 365 --~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 365 --QSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp --TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred --hhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCc
Confidence 12346777777777774 46666555667778888888888855
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=9.6e-26 Score=240.14 Aligned_cols=346 Identities=15% Similarity=0.126 Sum_probs=228.0
Q ss_pred CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEEEccCCCCCCCCcccCCCCCccEEEc
Q 005708 56 ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDL 135 (681)
Q Consensus 56 ~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~l 135 (681)
.+++|++|++++|.+..+|. |+.+++|++|++++|++..+| ++.+++|++|++++|. ++.++ ++++++|++|++
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~-~~~l~~L~~L~L 113 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD-VTPLTKLTYLNC 113 (457)
T ss_dssp HHTTCCEEECCSSCCCCCTT--GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC-CTTCTTCCEEEC
T ss_pred HcCCCCEEEccCCCcccChh--hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee-cCCCCcCCEEEC
Confidence 67899999999999988873 789999999999999998886 8899999999999998 77776 889999999999
Q ss_pred ccCCCcccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcccccccchhhhhhccchhhhcCCCCCcE
Q 005708 136 SESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHWQFESEEDARSNAKFIELGALSRLTS 215 (681)
Q Consensus 136 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 215 (681)
++|.++.+| ++.+++|++|++++|. +..++ ++++++|++|++++|... ... .++.+++|+.
T Consensus 114 ~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~---l~~l~~L~~L~l~~n~~~-----------~~~--~~~~l~~L~~ 174 (457)
T 3bz5_A 114 DTNKLTKLD--VSQNPLLTYLNCARNT-LTEID---VSHNTQLTELDCHLNKKI-----------TKL--DVTPQTQLTT 174 (457)
T ss_dssp CSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC---CTTCTTCCEEECTTCSCC-----------CCC--CCTTCTTCCE
T ss_pred CCCcCCeec--CCCCCcCCEEECCCCc-cceec---cccCCcCCEEECCCCCcc-----------ccc--ccccCCcCCE
Confidence 999998886 8899999999999965 44554 788999999999888421 111 4778899999
Q ss_pred EEEeCCCCCCCCCCCCCCCccEEEEEecCCcCCCchhHHHHHhhhccccccceeeeccccchhhhHHHHHHHHhccceee
Q 005708 216 LHIDIPKGKIMPSDMSFQNLTSFSIKIGDLEEDPLSDFIELFLEKFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILA 295 (681)
Q Consensus 216 L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~ 295 (681)
|++++|.+..+| ...+++|+.|++..+.....+. ..+++|+.|+
T Consensus 175 L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l~~~~l-----------------------------------~~l~~L~~L~ 218 (457)
T 3bz5_A 175 LDCSFNKITELD-VSQNKLLNRLNCDTNNITKLDL-----------------------------------NQNIQLTFLD 218 (457)
T ss_dssp EECCSSCCCCCC-CTTCTTCCEEECCSSCCSCCCC-----------------------------------TTCTTCSEEE
T ss_pred EECCCCccceec-cccCCCCCEEECcCCcCCeecc-----------------------------------ccCCCCCEEE
Confidence 999999888776 5677889999887766533210 0145677777
Q ss_pred cccccCcccccccccccccCCCcEEEEEecCCceEeeeccccccccccCccceeeecccccccccccCcCCCCcCCCccE
Q 005708 296 LAEVNDLENMVSDLANDGFNELMFLVIVRCNEMKCLVNSLERTRRVTLHKLEWLAIFLNQNLVEICHGQLPAGCLSNVKR 375 (681)
Q Consensus 296 l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~ 375 (681)
+.++... .. + + ..+++|++|+++++ .++.++ ...+++|+.|.++++ +|+.
T Consensus 219 Ls~N~l~-~i-p-~--~~l~~L~~L~l~~N-~l~~~~-------~~~l~~L~~L~l~~n-----------------~L~~ 268 (457)
T 3bz5_A 219 CSSNKLT-EI-D-V--TPLTQLTYFDCSVN-PLTELD-------VSTLSKLTTLHCIQT-----------------DLLE 268 (457)
T ss_dssp CCSSCCS-CC-C-C--TTCTTCSEEECCSS-CCSCCC-------CTTCTTCCEEECTTC-----------------CCSC
T ss_pred CcCCccc-cc-C-c--cccCCCCEEEeeCC-cCCCcC-------HHHCCCCCEEeccCC-----------------CCCE
Confidence 7655432 22 2 2 34788888888887 444332 344566666655432 3444
Q ss_pred EEEeeCCCCCccccchHHhhcCCCcEEEEeeccCcceeecccccccccccccccCccCEEeeccCCCcccccCCCCCccc
Q 005708 376 LDVGDCGSMLKILPSHLVQSFQNLQRLRVGRCELLESVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVS 455 (681)
Q Consensus 376 L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~ 455 (681)
|++++|..+..++ ...+++|+.|++++|..++.++.... .-..-.+...++|+.|.++++. ++.+ ++..
T Consensus 269 L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l~~l~~~~~-~L~~L~l~~~~~L~~L~L~~N~-l~~l-----~l~~ 337 (457)
T 3bz5_A 269 IDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQLYLLDCQAA-GITELDLSQNPKLVYLYLNNTE-LTEL-----DVSH 337 (457)
T ss_dssp CCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTCCEEECTTC-CCSCCCCTTCTTCCEEECTTCC-CSCC-----CCTT
T ss_pred EECCCCccCCccc----ccccccCCEEECCCCcccceeccCCC-cceEechhhcccCCEEECCCCc-cccc-----cccc
Confidence 4445544443332 12355666666666655555443100 0000012234556666665532 3332 2557
Q ss_pred ccccceeeeccCCccccccccccccceeeceeecccccceeEEEeccCCCCCCCCCCCCccEEEEecCC
Q 005708 456 LHNLKKVRVQDCDELRQVFPTNLGKKAAVEEMVPYRKRRDHIHIHATTSTSSPTPSLGNLVSITIRGCG 524 (681)
Q Consensus 456 l~~L~~L~i~~c~~l~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~i~~c~ 524 (681)
+++|+.|+++++ .++. ...|+.|.++++.+... + .+..|+.++++++.
T Consensus 338 l~~L~~L~l~~N-~l~~--------l~~L~~L~l~~n~l~g~----~--------~~~~l~~l~l~~N~ 385 (457)
T 3bz5_A 338 NTKLKSLSCVNA-HIQD--------FSSVGKIPALNNNFEAE----G--------QTITMPKETLTNNS 385 (457)
T ss_dssp CTTCSEEECCSS-CCCB--------CTTGGGSSGGGTSEEEE----E--------EEEECCCBCCBTTB
T ss_pred CCcCcEEECCCC-CCCC--------ccccccccccCCcEEec----c--------eeeecCccccccCc
Confidence 788888888774 2332 33566666666654432 1 34556666666653
No 33
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=2e-25 Score=237.43 Aligned_cols=186 Identities=15% Similarity=0.095 Sum_probs=117.9
Q ss_pred CCCCCCccEEEccCCCCccCCCCC-CCCCCcEEEccCCCCC-CCChHHHhCCCCc-------------cEEEecCCCCCC
Q 005708 32 INTFEDLTGISLMFNDIHEVPDEL-ECPKLQALFLQENSPL-AIPDRFFQGMKDL-------------KVLDLGGIRGFS 96 (681)
Q Consensus 32 ~~~l~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~-~l~~~~~~~l~~L-------------r~L~L~~~~~~~ 96 (681)
......|+.+++++|.+..+|..+ .+++|++|++++|.+. .+|.. ++++++| ++|++++|.+..
T Consensus 7 ~~~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~ 85 (454)
T 1jl5_A 7 NVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPG-NGEQREMAVSRLRDCLDRQAHELELNNLGLSS 85 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTSCTT-SCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC
T ss_pred ccccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcc-cccchhcchhhhhhhhccCCCEEEecCCcccc
Confidence 334567888889888888888777 8889999999888876 56665 4666654 889999988888
Q ss_pred CCccccCCCCCcEEEccCCCCCCCCcccCCCCCccEEEcccCCCcccchhhcCCccCcEEeccCCCCCCccChhhhcCCC
Q 005708 97 LPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLR 176 (681)
Q Consensus 97 lp~~i~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~ 176 (681)
+|.. .++|++|++++|. ++.+|.. +.+|++|++++|.++.+|.. .++|++|++++|. +..+| . +++++
T Consensus 86 lp~~---~~~L~~L~l~~n~-l~~lp~~--~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~-l~~lp-~-~~~l~ 153 (454)
T 1jl5_A 86 LPEL---PPHLESLVASCNS-LTELPEL--PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ-LEKLP-E-LQNSS 153 (454)
T ss_dssp CCSC---CTTCSEEECCSSC-CSSCCCC--CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC-CSSCC-C-CTTCT
T ss_pred CCCC---cCCCCEEEccCCc-CCccccc--cCCCcEEECCCCccCcccCC---CCCCCEEECcCCC-CCCCc-c-cCCCC
Confidence 7763 3688999998888 6667732 47889999999888877642 2688999998865 44577 3 88899
Q ss_pred CCcEEEcccCcccccccchhhhhhccchhhhcCCCCCcEEEEeCCCCCCCCCCCCCCCccEEEEEecCC
Q 005708 177 KLEELYMSHSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKGKIMPSDMSFQNLTSFSIKIGDL 245 (681)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~ 245 (681)
+|++|++++|.+. ..+. ...+|++|++++|.+..+|....+++|+.|++.++..
T Consensus 154 ~L~~L~l~~N~l~------------~lp~---~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l 207 (454)
T 1jl5_A 154 FLKIIDVDNNSLK------------KLPD---LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSL 207 (454)
T ss_dssp TCCEEECCSSCCS------------CCCC---CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCc------------ccCC---CcccccEEECcCCcCCcCccccCCCCCCEEECCCCcC
Confidence 9999999888542 1221 1248888899888887777556677777777666544
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=1.1e-24 Score=228.42 Aligned_cols=153 Identities=16% Similarity=0.303 Sum_probs=121.5
Q ss_pred CCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCC-ccccCCCCCcEEEccCCCCCCCCc--ccCCCCCc
Q 005708 54 ELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLP-SSLSFLINLRTLSLHDCRRFGDLP--LIGELSLL 130 (681)
Q Consensus 54 ~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~~l~--~l~~L~~L 130 (681)
...+++++.|+++++.+..+|..+|..+++|++|++++|.+..++ ..++.+++|++|++++|. ++.++ .++++++|
T Consensus 41 ~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 41 DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLL 119 (390)
T ss_dssp SGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred ccccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCC
Confidence 346789999999999999999988899999999999999997665 478899999999999998 66664 68899999
Q ss_pred cEEEcccCCCcccchh-hcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcccccccchhhhhhccchhhhcC
Q 005708 131 EILDLSESDVSEIPVS-FGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHWQFESEEDARSNAKFIELGA 209 (681)
Q Consensus 131 ~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 209 (681)
++|++++|.++.+|.. ++++++|++|++++|. +..+++..+.++++|++|++++|.+. .. .++.
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~------------~~--~~~~ 184 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLT------------HV--DLSL 184 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCS------------BC--CGGG
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCC------------cc--cccc
Confidence 9999999999988876 4889999999999965 44555544788888888888887531 11 2455
Q ss_pred CCCCcEEEEeCCC
Q 005708 210 LSRLTSLHIDIPK 222 (681)
Q Consensus 210 l~~L~~L~l~~~~ 222 (681)
+++|+.|++++|.
T Consensus 185 l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 185 IPSLFHANVSYNL 197 (390)
T ss_dssp CTTCSEEECCSSC
T ss_pred ccccceeeccccc
Confidence 6666666666554
No 35
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=9e-25 Score=234.44 Aligned_cols=378 Identities=18% Similarity=0.193 Sum_probs=221.2
Q ss_pred eCCcccCCCCCCCCCCccEEEccCCCCccCC-CCC-CCCCCcEEEccCCCCC-CCChHHHhCCCCccEEEecCCCCCCC-
Q 005708 22 AGVELKDWPSINTFEDLTGISLMFNDIHEVP-DEL-ECPKLQALFLQENSPL-AIPDRFFQGMKDLKVLDLGGIRGFSL- 97 (681)
Q Consensus 22 ~~~~~~~~~~~~~l~~lr~L~l~~~~~~~l~-~~~-~~~~Lr~L~l~~~~~~-~l~~~~~~~l~~Lr~L~L~~~~~~~l- 97 (681)
.+.++..+|. -.+++++|++++|.+..++ ..+ .+++|++|++++|.+. .++...|.++++|++|++++|++..+
T Consensus 18 ~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~ 95 (455)
T 3v47_A 18 INRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLE 95 (455)
T ss_dssp CSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEEC
T ss_pred CCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccC
Confidence 3345666665 3367777777777777653 333 7777777777777765 55555577777777777777777544
Q ss_pred CccccCCCCCcEEEccCCCCCCC-Cc---ccCCCCCccEEEcccCCCccc-chh-hcCCccCcEEeccCCCCCCccChhh
Q 005708 98 PSSLSFLINLRTLSLHDCRRFGD-LP---LIGELSLLEILDLSESDVSEI-PVS-FGRLGHLRLLDLTDCVHLELIPRDV 171 (681)
Q Consensus 98 p~~i~~l~~L~~L~L~~~~~~~~-l~---~l~~L~~L~~L~l~~~~i~~l-p~~-i~~l~~L~~L~L~~~~~~~~~~~~~ 171 (681)
|..++++++|++|++++|. +.. ++ .++++++|++|++++|.+..+ |.. ++++++|++|++++|......+..
T Consensus 96 ~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~- 173 (455)
T 3v47_A 96 TGAFNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED- 173 (455)
T ss_dssp TTTTTTCTTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT-
T ss_pred hhhccCcccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh-
Confidence 6677777777777777777 443 33 377777777777777777765 444 677777777777775544333332
Q ss_pred hcCC--CCCcEEEcccCcccccccchhhhhhccchhhhcCCCCCcEEEEeCCCCCCCCCCCCCCCccEEEEEecCCcCCC
Q 005708 172 LSSL--RKLEELYMSHSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKGKIMPSDMSFQNLTSFSIKIGDLEEDP 249 (681)
Q Consensus 172 l~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 249 (681)
+.++ .+|+.|+++++......... ........+..+++|++|++++|.+.....
T Consensus 174 l~~l~~~~L~~L~l~~n~l~~~~~~~---~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~--------------------- 229 (455)
T 3v47_A 174 LLNFQGKHFTLLRLSSITLQDMNEYW---LGWEKCGNPFKNTSITTLDLSGNGFKESMA--------------------- 229 (455)
T ss_dssp SGGGTTCEEEEEECTTCBCTTCSTTC---TTHHHHCCTTTTCEEEEEECTTSCCCHHHH---------------------
T ss_pred hhccccccccccccccCcccccchhh---ccccccccccccceeeeEecCCCcccccch---------------------
Confidence 4444 56777777766532110000 000111223345667777776665532110
Q ss_pred chhHHHHHhhhccccccceeeeccccchhhhHHHHHHHHhccceeecccccCcccccccccccccCCCcEEEEEecCCce
Q 005708 250 LSDFIELFLEKFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNDLENMVSDLANDGFNELMFLVIVRCNEMK 329 (681)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~ 329 (681)
+.+.......+++.+.+.++.... .......+... ....+.....++|++|++.++ .+.
T Consensus 230 -----~~~~~~~~~~~L~~L~l~~~~~~~----------~~~~~~~~~~~-----~~~~~~~~~~~~L~~L~l~~n-~l~ 288 (455)
T 3v47_A 230 -----KRFFDAIAGTKIQSLILSNSYNMG----------SSFGHTNFKDP-----DNFTFKGLEASGVKTCDLSKS-KIF 288 (455)
T ss_dssp -----HHHHHHTTTCCEEEEECTTCTTTS----------CCTTCCSSCCC-----CTTTTGGGTTSCCCEEECCSS-CCC
T ss_pred -----hhhhccccccceeeEeeccccccc----------cccchhhhccC-----cccccccccccCceEEEecCc-ccc
Confidence 111111122233333333221110 00000000000 001111112478899999888 444
Q ss_pred EeeeccccccccccCccceeeecccccccccccCcCCCCcCCCccEEEEeeCCCCCccccchHHhhcCCCcEEEEeeccC
Q 005708 330 CLVNSLERTRRVTLHKLEWLAIFLNQNLVEICHGQLPAGCLSNVKRLDVGDCGSMLKILPSHLVQSFQNLQRLRVGRCEL 409 (681)
Q Consensus 330 ~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 409 (681)
.+... ....+++|++|+++++. +..+... ....+++|+.|++++| .++.+.+ ..+..+++|++|++++|..
T Consensus 289 ~~~~~----~~~~l~~L~~L~Ls~n~-l~~~~~~--~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N~l 359 (455)
T 3v47_A 289 ALLKS----VFSHFTDLEQLTLAQNE-INKIDDN--AFWGLTHLLKLNLSQN-FLGSIDS-RMFENLDKLEVLDLSYNHI 359 (455)
T ss_dssp EECTT----TTTTCTTCCEEECTTSC-CCEECTT--TTTTCTTCCEEECCSS-CCCEECG-GGGTTCTTCCEEECCSSCC
T ss_pred ccchh----hcccCCCCCEEECCCCc-ccccChh--HhcCcccCCEEECCCC-ccCCcCh-hHhcCcccCCEEECCCCcc
Confidence 44322 46678889999998874 3333211 2346789999999985 5566533 4456789999999999754
Q ss_pred cceeecccccccccccccccCccCEEeeccCCCcccccCCCCCcccccccceeeeccCCc
Q 005708 410 LESVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVQDCDE 469 (681)
Q Consensus 410 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~i~~c~~ 469 (681)
..++. ..+..+++|+.|+++++ .++.++... +..+++|++|++++++-
T Consensus 360 -~~~~~--------~~~~~l~~L~~L~L~~N-~l~~~~~~~--~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 360 -RALGD--------QSFLGLPNLKELALDTN-QLKSVPDGI--FDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp -CEECT--------TTTTTCTTCCEEECCSS-CCSCCCTTT--TTTCTTCCEEECCSSCB
T ss_pred -cccCh--------hhccccccccEEECCCC-ccccCCHhH--hccCCcccEEEccCCCc
Confidence 43322 13567899999999985 455655432 35789999999998753
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=1.2e-23 Score=227.00 Aligned_cols=171 Identities=25% Similarity=0.285 Sum_probs=127.7
Q ss_pred cEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCC-CccccCCCCCcEEEccCCCC
Q 005708 39 TGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSL-PSSLSFLINLRTLSLHDCRR 117 (681)
Q Consensus 39 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~~ 117 (681)
+.++.+++.+..+|.... +++++|++++|.+..++...|.++++|++|+|++|.+..+ |..++++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~- 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP-TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR- 91 (477)
T ss_dssp TEEECCSCCCSSCCSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-
T ss_pred CEEEeCCCCcCcCCCCCC-CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-
Confidence 567778888888876553 6888899999988888766688889999999998888655 7788888889999998888
Q ss_pred CCCCc--ccCCCCCccEEEcccCCCccc-chhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcccccccc
Q 005708 118 FGDLP--LIGELSLLEILDLSESDVSEI-PVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHWQFES 194 (681)
Q Consensus 118 ~~~l~--~l~~L~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 194 (681)
++.+| .++++++|++|++++|.+..+ |..+.++++|++|++++|. +..++...+.++++|++|++++|.+.
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~----- 165 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLT----- 165 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCS-----
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCc-----
Confidence 67776 578888888888888888765 5567888888888888854 34444434777778888887777431
Q ss_pred hhhhhhccchhhhcCCCCCcEEEEeCCCC
Q 005708 195 EEDARSNAKFIELGALSRLTSLHIDIPKG 223 (681)
Q Consensus 195 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 223 (681)
......+..+++|+.|++.+|.+
T Consensus 166 ------~~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 166 ------SIPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp ------SCCHHHHTTCTTCCEEEEESCCC
T ss_pred ------ccChhHhcccCCCcEEeCCCCcC
Confidence 12234466677777777766654
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=7.4e-24 Score=222.20 Aligned_cols=303 Identities=18% Similarity=0.198 Sum_probs=223.2
Q ss_pred CCCCCccEEEccCCCCccCCCCC--CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCC-CccccCCCCCcE
Q 005708 33 NTFEDLTGISLMFNDIHEVPDEL--ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSL-PSSLSFLINLRT 109 (681)
Q Consensus 33 ~~l~~lr~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~ 109 (681)
-.++++++++++++.+..+|... .+++|++|++++|.+..++...|..+++|++|++++|.+..+ |..++++++|++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 34689999999999999998864 789999999999999998877789999999999999999776 456899999999
Q ss_pred EEccCCCCCCCCc--ccCCCCCccEEEcccCCCcccc-hhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccC
Q 005708 110 LSLHDCRRFGDLP--LIGELSLLEILDLSESDVSEIP-VSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHS 186 (681)
Q Consensus 110 L~L~~~~~~~~l~--~l~~L~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 186 (681)
|++++|. ++.+| .++++++|++|++++|.++.++ ..++.+++|++|++++|. +..++ ++.+++|+.|++++|
T Consensus 122 L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 122 LVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYN 196 (390)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC---GGGCTTCSEEECCSS
T ss_pred EECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccc---cccccccceeecccc
Confidence 9999998 77887 4799999999999999999875 469999999999999965 44554 577899999999988
Q ss_pred cccccccchhhhhhccchhhhcCCCCCcEEEEeCCCCCCCCCCCCCCCccEEEEEecCCcCCCchhHHHHHhhhcccccc
Q 005708 187 FCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKGKIMPSDMSFQNLTSFSIKIGDLEEDPLSDFIELFLEKFNKRCS 266 (681)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l 266 (681)
.. ..+...++|+.|++++|.+..++.. ..++|+.|++..+....
T Consensus 197 ~l----------------~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l~~------------------- 240 (390)
T 3o6n_A 197 LL----------------STLAIPIAVEELDASHNSINVVRGP-VNVELTILKLQHNNLTD------------------- 240 (390)
T ss_dssp CC----------------SEEECCSSCSEEECCSSCCCEEECC-CCSSCCEEECCSSCCCC-------------------
T ss_pred cc----------------cccCCCCcceEEECCCCeeeecccc-ccccccEEECCCCCCcc-------------------
Confidence 53 2344556899999999887665443 23455555544433211
Q ss_pred ceeeeccccchhhhHHHHHHHHhccceeecccccCcccccccccccccCCCcEEEEEecCCceEeeeccccccccccCcc
Q 005708 267 RAMGLSQDMRISALHSWIKNLLLRSEILALAEVNDLENMVSDLANDGFNELMFLVIVRCNEMKCLVNSLERTRRVTLHKL 346 (681)
Q Consensus 267 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L 346 (681)
. +.+ ..+++|++|+++++ .+..+... ....+++|
T Consensus 241 --------------------------------------~-~~l--~~l~~L~~L~Ls~n-~l~~~~~~----~~~~l~~L 274 (390)
T 3o6n_A 241 --------------------------------------T-AWL--LNYPGLVEVDLSYN-ELEKIMYH----PFVKMQRL 274 (390)
T ss_dssp --------------------------------------C-GGG--GGCTTCSEEECCSS-CCCEEESG----GGTTCSSC
T ss_pred --------------------------------------c-HHH--cCCCCccEEECCCC-cCCCcChh----HccccccC
Confidence 1 122 23678888888887 45444322 45667788
Q ss_pred ceeeecccccccccccCcCCCCcCCCccEEEEeeCCCCCccccchHHhhcCCCcEEEEeeccCcceeecccccccccccc
Q 005708 347 EWLAIFLNQNLVEICHGQLPAGCLSNVKRLDVGDCGSMLKILPSHLVQSFQNLQRLRVGRCELLESVFEIERVNIAKEET 426 (681)
Q Consensus 347 ~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 426 (681)
++|+++++ +++.+.. ....+++|+.|++++| .++.+++. +..+++|+.|++++|. +..++ .
T Consensus 275 ~~L~L~~n-~l~~~~~---~~~~l~~L~~L~L~~n-~l~~~~~~--~~~l~~L~~L~L~~N~-i~~~~-----------~ 335 (390)
T 3o6n_A 275 ERLYISNN-RLVALNL---YGQPIPTLKVLDLSHN-HLLHVERN--QPQFDRLENLYLDHNS-IVTLK-----------L 335 (390)
T ss_dssp CEEECCSS-CCCEEEC---SSSCCTTCCEEECCSS-CCCCCGGG--HHHHTTCSEEECCSSC-CCCCC-----------C
T ss_pred CEEECCCC-cCcccCc---ccCCCCCCCEEECCCC-cceecCcc--ccccCcCCEEECCCCc-cceeC-----------c
Confidence 88888876 3443321 1245678888888885 45555332 4567888888887765 33321 3
Q ss_pred cccCccCEEeeccCC
Q 005708 427 ELFSSLEKLTLIDLP 441 (681)
Q Consensus 427 ~~~~~L~~L~l~~~~ 441 (681)
..+++|+.|.+++++
T Consensus 336 ~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 336 STHHTLKNLTLSHND 350 (390)
T ss_dssp CTTCCCSEEECCSSC
T ss_pred hhhccCCEEEcCCCC
Confidence 456677777776654
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=4.2e-23 Score=222.65 Aligned_cols=308 Identities=23% Similarity=0.245 Sum_probs=223.8
Q ss_pred EEEeCCcccCCCCCCCCCCccEEEccCCCCccCCCC-C-CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCC
Q 005708 19 MIKAGVELKDWPSINTFEDLTGISLMFNDIHEVPDE-L-ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFS 96 (681)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~lr~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~ 96 (681)
+...+..+..+|. .-.++++.|++++|.+..++.. + .+++|++|++++|.+..+++..|.++++|++|+|++|.+..
T Consensus 16 v~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 94 (477)
T 2id5_A 16 VLCHRKRFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL 94 (477)
T ss_dssp EECCSCCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred EEeCCCCcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCc
Confidence 3334456777775 2346899999999999988543 3 89999999999999998876678999999999999999988
Q ss_pred CCc-cccCCCCCcEEEccCCCCCCCC-c-ccCCCCCccEEEcccCCCccc-chhhcCCccCcEEeccCCCCCCccChhhh
Q 005708 97 LPS-SLSFLINLRTLSLHDCRRFGDL-P-LIGELSLLEILDLSESDVSEI-PVSFGRLGHLRLLDLTDCVHLELIPRDVL 172 (681)
Q Consensus 97 lp~-~i~~l~~L~~L~L~~~~~~~~l-~-~l~~L~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~~~~~~l 172 (681)
+|. .++++++|++|++++|. +..+ + .+.++++|++|++++|.+..+ |..+..+++|++|++++|. +..++...+
T Consensus 95 ~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l 172 (477)
T 2id5_A 95 IPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEAL 172 (477)
T ss_dssp CCTTSSTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHH
T ss_pred cCcccccCCCCCCEEECCCCc-cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHh
Confidence 876 47899999999999999 5544 4 799999999999999999876 5579999999999999964 567777778
Q ss_pred cCCCCCcEEEcccCcccccccchhhhhhccchhhhcCCCCCcEEEEeCCCC-CCCCCC-CCCCCccEEEEEecCCcCCCc
Q 005708 173 SSLRKLEELYMSHSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKG-KIMPSD-MSFQNLTSFSIKIGDLEEDPL 250 (681)
Q Consensus 173 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~-~~l~~L~~L~l~~~~~~~~~~ 250 (681)
.++++|+.|++++|.+. ......+..+++|+.|+++++.. ..++.. ....+|+.|++..+.....+.
T Consensus 173 ~~l~~L~~L~l~~n~i~-----------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 241 (477)
T 2id5_A 173 SHLHGLIVLRLRHLNIN-----------AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY 241 (477)
T ss_dssp TTCTTCCEEEEESCCCC-----------EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCH
T ss_pred cccCCCcEEeCCCCcCc-----------EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCH
Confidence 99999999999998642 13345688899999999998765 344433 334477777777665433221
Q ss_pred hhHHHHHhhhccccccceeeeccccchhhhHHHHHHHHhccceeecccccCcccccccccccccCCCcEEEEEecCCceE
Q 005708 251 SDFIELFLEKFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVNDLENMVSDLANDGFNELMFLVIVRCNEMKC 330 (681)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~ 330 (681)
... ..+++|++|+++++ .+..
T Consensus 242 --------------------------------~~~--------------------------~~l~~L~~L~Ls~n-~l~~ 262 (477)
T 2id5_A 242 --------------------------------LAV--------------------------RHLVYLRFLNLSYN-PIST 262 (477)
T ss_dssp --------------------------------HHH--------------------------TTCTTCCEEECCSS-CCCE
T ss_pred --------------------------------HHh--------------------------cCccccCeeECCCC-cCCc
Confidence 111 12556666666665 3444
Q ss_pred eeeccccccccccCccceeeecccccccccccCcCCCCcCCCccEEEEeeCCCCCccccchHHhhcCCCcEEEEeecc
Q 005708 331 LVNSLERTRRVTLHKLEWLAIFLNQNLVEICHGQLPAGCLSNVKRLDVGDCGSMLKILPSHLVQSFQNLQRLRVGRCE 408 (681)
Q Consensus 331 l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 408 (681)
++.. .+..+++|++|+++++. +..+... ....+++|+.|+++++ .++.+. ...+..+++|+.|++++++
T Consensus 263 ~~~~----~~~~l~~L~~L~L~~n~-l~~~~~~--~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 263 IEGS----MLHELLRLQEIQLVGGQ-LAVVEPY--AFRGLNYLRVLNVSGN-QLTTLE-ESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp ECTT----SCTTCTTCCEEECCSSC-CSEECTT--TBTTCTTCCEEECCSS-CCSCCC-GGGBSCGGGCCEEECCSSC
T ss_pred cChh----hccccccCCEEECCCCc-cceECHH--HhcCcccCCEEECCCC-cCceeC-HhHcCCCcccCEEEccCCC
Confidence 4332 34556677777777662 3332111 1235677888888774 556553 3344567888888887754
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=2e-23 Score=230.99 Aligned_cols=304 Identities=17% Similarity=0.221 Sum_probs=177.0
Q ss_pred CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCC-ccccCCCCCcEEEccCCCCCCCCc--ccCCCCCccE
Q 005708 56 ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLP-SSLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEI 132 (681)
Q Consensus 56 ~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~~l~--~l~~L~~L~~ 132 (681)
.+++++.|+++++.+..+|..+|+.+++|++|++++|.+..++ ..++.+++|++|++++|. ++.+| .++++++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCE
Confidence 5567777777777777777777777777777777777775554 467777777777777777 55454 5677777777
Q ss_pred EEcccCCCcccchh-hcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcccccccchhhhhhccchhhhcCCC
Q 005708 133 LDLSESDVSEIPVS-FGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHWQFESEEDARSNAKFIELGALS 211 (681)
Q Consensus 133 L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 211 (681)
|++++|.++.+|.. ++++++|++|++++|.. ..+++..++++++|++|++++|.+. .. .++.++
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~------------~~--~~~~l~ 192 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLT------------HV--DLSLIP 192 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CBCCTTTTTTCTTCCEEECTTSCCS------------BC--CGGGCT
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcC-CCCChhhhhcCCcCcEEECcCCCCC------------Cc--Chhhhh
Confidence 77777777777665 46777777777777543 3444434677777777777776531 11 245566
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCccEEEEEecCCcCCCchhHHHHHhhhccccccceeeeccccchhhhHHHHHHHHhcc
Q 005708 212 RLTSLHIDIPKGKIMPSDMSFQNLTSFSIKIGDLEEDPLSDFIELFLEKFNKRCSRAMGLSQDMRISALHSWIKNLLLRS 291 (681)
Q Consensus 212 ~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L 291 (681)
+|+.|++++|.+..++. ..+|+.|++.++.....+. .. .++|
T Consensus 193 ~L~~L~l~~n~l~~l~~---~~~L~~L~ls~n~l~~~~~--------------------------------~~---~~~L 234 (597)
T 3oja_B 193 SLFHANVSYNLLSTLAI---PIAVEELDASHNSINVVRG--------------------------------PV---NVEL 234 (597)
T ss_dssp TCSEEECCSSCCSEEEC---CTTCSEEECCSSCCCEEEC--------------------------------SC---CSCC
T ss_pred hhhhhhcccCccccccC---CchhheeeccCCccccccc--------------------------------cc---CCCC
Confidence 77777777766543322 2345555555443321111 00 1345
Q ss_pred ceeecccccCcccccccccccccCCCcEEEEEecCCceEeeeccccccccccCccceeeecccccccccccCcCCCCcCC
Q 005708 292 EILALAEVNDLENMVSDLANDGFNELMFLVIVRCNEMKCLVNSLERTRRVTLHKLEWLAIFLNQNLVEICHGQLPAGCLS 371 (681)
Q Consensus 292 ~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 371 (681)
+.|++.++... +. +.+. .+++|++|+++++ .+..+... .+..+++|++|+++++ .+..+. .....++
T Consensus 235 ~~L~L~~n~l~-~~-~~l~--~l~~L~~L~Ls~N-~l~~~~~~----~~~~l~~L~~L~Ls~N-~l~~l~---~~~~~l~ 301 (597)
T 3oja_B 235 TILKLQHNNLT-DT-AWLL--NYPGLVEVDLSYN-ELEKIMYH----PFVKMQRLERLYISNN-RLVALN---LYGQPIP 301 (597)
T ss_dssp CEEECCSSCCC-CC-GGGG--GCTTCSEEECCSS-CCCEEESG----GGTTCSSCCEEECTTS-CCCEEE---CSSSCCT
T ss_pred CEEECCCCCCC-CC-hhhc--cCCCCCEEECCCC-ccCCCCHH----HhcCccCCCEEECCCC-CCCCCC---cccccCC
Confidence 55555444322 11 2222 3677777777776 34443222 4556677777777765 333331 1123456
Q ss_pred CccEEEEeeCCCCCccccchHHhhcCCCcEEEEeeccCcceeecccccccccccccccCccCEEeeccCC
Q 005708 372 NVKRLDVGDCGSMLKILPSHLVQSFQNLQRLRVGRCELLESVFEIERVNIAKEETELFSSLEKLTLIDLP 441 (681)
Q Consensus 372 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 441 (681)
+|+.|++++| .++.+++. +..+++|+.|++++|.. ..++ ...+++|+.|.+++++
T Consensus 302 ~L~~L~Ls~N-~l~~i~~~--~~~l~~L~~L~L~~N~l-~~~~-----------~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 302 TLKVLDLSHN-HLLHVERN--QPQFDRLENLYLDHNSI-VTLK-----------LSTHHTLKNLTLSHND 356 (597)
T ss_dssp TCCEEECCSS-CCCCCGGG--HHHHTTCSEEECCSSCC-CCCC-----------CCTTCCCSEEECCSSC
T ss_pred CCcEEECCCC-CCCccCcc--cccCCCCCEEECCCCCC-CCcC-----------hhhcCCCCEEEeeCCC
Confidence 7777777764 34444322 34566777777766542 2221 2345566666665544
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=2.4e-23 Score=230.46 Aligned_cols=302 Identities=16% Similarity=0.157 Sum_probs=236.5
Q ss_pred CCCCccEEEccCCCCccCCCCC--CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCC-ccccCCCCCcEE
Q 005708 34 TFEDLTGISLMFNDIHEVPDEL--ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLP-SSLSFLINLRTL 110 (681)
Q Consensus 34 ~l~~lr~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L 110 (681)
.+.+++.++++++.+..+|... .+++|++|++++|.+..+++..|+.+++|++|+|++|.+..+| ..++++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 4578999999999999998865 7899999999999999988777899999999999999997765 457999999999
Q ss_pred EccCCCCCCCCc--ccCCCCCccEEEcccCCCcccch-hhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCc
Q 005708 111 SLHDCRRFGDLP--LIGELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSF 187 (681)
Q Consensus 111 ~L~~~~~~~~l~--~l~~L~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 187 (681)
++++|. ++.+| .++++++|++|++++|.+..++. .++.+++|++|++++|. +..++ ++.+++|+.|++++|.
T Consensus 129 ~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~---~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 129 VLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYNL 203 (597)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC---GGGCTTCSEEECCSSC
T ss_pred EeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC---hhhhhhhhhhhcccCc
Confidence 999998 77777 47999999999999999997754 69999999999999965 45555 5778999999999885
Q ss_pred ccccccchhhhhhccchhhhcCCCCCcEEEEeCCCCCCCCCCCCCCCccEEEEEecCCcCCCchhHHHHHhhhccccccc
Q 005708 188 CHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKGKIMPSDMSFQNLTSFSIKIGDLEEDPLSDFIELFLEKFNKRCSR 267 (681)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 267 (681)
. ..+...++|+.|++++|.+..++.. ..++|+.|++.++.....+.
T Consensus 204 l----------------~~l~~~~~L~~L~ls~n~l~~~~~~-~~~~L~~L~L~~n~l~~~~~----------------- 249 (597)
T 3oja_B 204 L----------------STLAIPIAVEELDASHNSINVVRGP-VNVELTILKLQHNNLTDTAW----------------- 249 (597)
T ss_dssp C----------------SEEECCTTCSEEECCSSCCCEEECS-CCSCCCEEECCSSCCCCCGG-----------------
T ss_pred c----------------ccccCCchhheeeccCCcccccccc-cCCCCCEEECCCCCCCCChh-----------------
Confidence 3 2345667899999999998776654 33689999988876543221
Q ss_pred eeeeccccchhhhHHHHHHHHhccceeecccccCcccccccccccccCCCcEEEEEecCCceEeeeccccccccccCccc
Q 005708 268 AMGLSQDMRISALHSWIKNLLLRSEILALAEVNDLENMVSDLANDGFNELMFLVIVRCNEMKCLVNSLERTRRVTLHKLE 347 (681)
Q Consensus 268 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~ 347 (681)
+ ..+++|+.|++.++.........+. .+++|++|++++| .+..++. ....+++|+
T Consensus 250 ----------------l-~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N-~l~~l~~-----~~~~l~~L~ 304 (597)
T 3oja_B 250 ----------------L-LNYPGLVEVDLSYNELEKIMYHPFV--KMQRLERLYISNN-RLVALNL-----YGQPIPTLK 304 (597)
T ss_dssp ----------------G-GGCTTCSEEECCSSCCCEEESGGGT--TCSSCCEEECTTS-CCCEEEC-----SSSCCTTCC
T ss_pred ----------------h-ccCCCCCEEECCCCccCCCCHHHhc--CccCCCEEECCCC-CCCCCCc-----ccccCCCCc
Confidence 1 1156788888876653322222333 3899999999998 6666654 456789999
Q ss_pred eeeecccccccccccCcCCCCcCCCccEEEEeeCCCCCccccchHHhhcCCCcEEEEeecc
Q 005708 348 WLAIFLNQNLVEICHGQLPAGCLSNVKRLDVGDCGSMLKILPSHLVQSFQNLQRLRVGRCE 408 (681)
Q Consensus 348 ~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 408 (681)
.|++++|. +..++. ....+++|+.|++++|. ++.+. ...+++|+.|++++++
T Consensus 305 ~L~Ls~N~-l~~i~~---~~~~l~~L~~L~L~~N~-l~~~~----~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 305 VLDLSHNH-LLHVER---NQPQFDRLENLYLDHNS-IVTLK----LSTHHTLKNLTLSHND 356 (597)
T ss_dssp EEECCSSC-CCCCGG---GHHHHTTCSEEECCSSC-CCCCC----CCTTCCCSEEECCSSC
T ss_pred EEECCCCC-CCccCc---ccccCCCCCEEECCCCC-CCCcC----hhhcCCCCEEEeeCCC
Confidence 99999984 443321 12467899999999964 55553 3468999999999875
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=4.1e-22 Score=203.91 Aligned_cols=146 Identities=21% Similarity=0.262 Sum_probs=86.7
Q ss_pred CccEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCC-CccccCCCCCcEEEccCC
Q 005708 37 DLTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSL-PSSLSFLINLRTLSLHDC 115 (681)
Q Consensus 37 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~ 115 (681)
+++.++++++.+..+|... .++|++|++++|.+..+++..|.++++|++|++++|.+..+ |..++++++|++|++++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 4666666666666666544 25666666666666666554566666666666666666544 555666666666666666
Q ss_pred CCCCCCc-ccCCCCCccEEEcccCCCcccch-hhcCCccCcEEeccCCCCCC-ccChhhhcCCCCCcEEEcccCc
Q 005708 116 RRFGDLP-LIGELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCVHLE-LIPRDVLSSLRKLEELYMSHSF 187 (681)
Q Consensus 116 ~~~~~l~-~l~~L~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~ 187 (681)
. ++.+| .+. ++|++|++++|.++.+|. .+.++++|++|++++|.... ......+..+ +|++|++++|.
T Consensus 113 ~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~ 183 (332)
T 2ft3_A 113 H-LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK 183 (332)
T ss_dssp C-CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB
T ss_pred c-CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC
Confidence 6 55555 332 566666666666666654 35666666666666644321 1222224444 66666666554
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=1.9e-21 Score=198.94 Aligned_cols=146 Identities=22% Similarity=0.325 Sum_probs=72.7
Q ss_pred CccEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCC-CccccCCCCCcEEEccCC
Q 005708 37 DLTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSL-PSSLSFLINLRTLSLHDC 115 (681)
Q Consensus 37 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~ 115 (681)
+++.++++++.+..+|.... +++++|++++|.+..++...|+++++|++|++++|.+..+ |..++++++|++|++++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCeEEEecCCCccccCccCC-CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 45555555555555554332 4555555555555555554455555555555555555433 455555555555555555
Q ss_pred CCCCCCc-ccCCCCCccEEEcccCCCcccch-hhcCCccCcEEeccCCCCCC-ccChhhhcCCCCCcEEEcccC
Q 005708 116 RRFGDLP-LIGELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCVHLE-LIPRDVLSSLRKLEELYMSHS 186 (681)
Q Consensus 116 ~~~~~l~-~l~~L~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~-~~~~~~l~~l~~L~~L~l~~~ 186 (681)
. ++.+| .+. ++|++|++++|.++.++. .+.++++|++|++++|.... ......+.++++|++|++++|
T Consensus 111 ~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 181 (330)
T 1xku_A 111 Q-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181 (330)
T ss_dssp C-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred c-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC
Confidence 5 44444 222 455555555555554433 34555555555555533211 011112444455555555444
No 43
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.88 E-value=1.9e-23 Score=232.02 Aligned_cols=129 Identities=16% Similarity=0.115 Sum_probs=70.5
Q ss_pred hCCCCccEEEecCCCCC-CCCccccC-CC-CCcEEEccCCCCCCC--Cc-ccCCCCCccEEEcccCCCcc-----cchhh
Q 005708 79 QGMKDLKVLDLGGIRGF-SLPSSLSF-LI-NLRTLSLHDCRRFGD--LP-LIGELSLLEILDLSESDVSE-----IPVSF 147 (681)
Q Consensus 79 ~~l~~Lr~L~L~~~~~~-~lp~~i~~-l~-~L~~L~L~~~~~~~~--l~-~l~~L~~L~~L~l~~~~i~~-----lp~~i 147 (681)
..+++|++|+|++|.+. ..+..++. ++ +|++|++++|..+.. ++ ...++++|++|++++|.+.. ++...
T Consensus 109 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred hhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 36667777777776552 22333433 22 377777766652221 11 23466677777777765542 33344
Q ss_pred cCCccCcEEeccCCCCC----CccChhhhcCCCCCcEEEcccCcccccccchhhhhhccchhhhcCCCCCcEEEEeC
Q 005708 148 GRLGHLRLLDLTDCVHL----ELIPRDVLSSLRKLEELYMSHSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDI 220 (681)
Q Consensus 148 ~~l~~L~~L~L~~~~~~----~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 220 (681)
..+++|++|+++++... ..++. .+.++++|++|++++|.. ...+..+..+++|++|+++.
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~------------~~l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLET-IARNCRSLVSVKVGDFEI------------LELVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHH-HHHHCTTCCEEECSSCBG------------GGGHHHHHHCTTCCEEEECB
T ss_pred hcCCCccEEEeeccCCCccCHHHHHH-HHhhCCCCcEEeccCccH------------HHHHHHHhhhhHHHhhcccc
Confidence 55667777777664432 12222 245666777777766532 13445566667777777654
No 44
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.86 E-value=6.8e-24 Score=235.64 Aligned_cols=127 Identities=16% Similarity=0.164 Sum_probs=75.2
Q ss_pred CCCCCcEEEccCCCCCCCChHHHhC-CC-CccEEEecCCCC---CCCCccccCCCCCcEEEccCCCCCCCC-----c-cc
Q 005708 56 ECPKLQALFLQENSPLAIPDRFFQG-MK-DLKVLDLGGIRG---FSLPSSLSFLINLRTLSLHDCRRFGDL-----P-LI 124 (681)
Q Consensus 56 ~~~~Lr~L~l~~~~~~~l~~~~~~~-l~-~Lr~L~L~~~~~---~~lp~~i~~l~~L~~L~L~~~~~~~~l-----~-~l 124 (681)
.+++|++|++++|.+.......+.. ++ +|++|++++|.. ..++..+.++++|++|++++|. +.+. + ..
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS-FSEKDGKWLHELA 188 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCE-EECCCSHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcccc-ccCcchhHHHHHH
Confidence 4577777777777655322222333 33 377777777652 1223333466777777777776 3222 2 34
Q ss_pred CCCCCccEEEcccCCCc-----ccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEccc
Q 005708 125 GELSLLEILDLSESDVS-----EIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSH 185 (681)
Q Consensus 125 ~~L~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~ 185 (681)
.++++|++|+++++.++ .++..+.++++|++|++++|.. ..++.. +.++++|++|+++.
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~l~~~-~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI-LELVGF-FKAAANLEEFCGGS 252 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG-GGGHHH-HHHCTTCCEEEECB
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH-HHHHHH-HhhhhHHHhhcccc
Confidence 56677777777777664 3445556677777777777543 345543 66777777777754
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=1.9e-21 Score=198.96 Aligned_cols=155 Identities=23% Similarity=0.264 Sum_probs=125.5
Q ss_pred CCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCC-CccccCCCCCcEEEccCCCCCCCC-c-ccCCCCCccEEE
Q 005708 58 PKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSL-PSSLSFLINLRTLSLHDCRRFGDL-P-LIGELSLLEILD 134 (681)
Q Consensus 58 ~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~~l-~-~l~~L~~L~~L~ 134 (681)
.+++.++++++.+..+|..+ .++|++|++++|.+..+ |..++++++|++|++++|. ++.+ | .++++++|++|+
T Consensus 33 c~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEE
T ss_pred ccCCEEECCCCCccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEE
Confidence 37899999999999999764 47899999999999776 4579999999999999998 6665 5 899999999999
Q ss_pred cccCCCcccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcccccccchhhhhhccchhhhcCCCCCc
Q 005708 135 LSESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHWQFESEEDARSNAKFIELGALSRLT 214 (681)
Q Consensus 135 l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 214 (681)
+++|.++.+|..+. ++|++|++++|. +..++...+.++++|++|++++|.... ....+..+..+ +|+
T Consensus 109 L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~---------~~~~~~~~~~l-~L~ 175 (332)
T 2ft3_A 109 ISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLEN---------SGFEPGAFDGL-KLN 175 (332)
T ss_dssp CCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBG---------GGSCTTSSCSC-CCS
T ss_pred CCCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCcccc---------CCCCcccccCC-ccC
Confidence 99999999988776 899999999954 557777668899999999999886421 11334556666 888
Q ss_pred EEEEeCCCCCCCCCC
Q 005708 215 SLHIDIPKGKIMPSD 229 (681)
Q Consensus 215 ~L~l~~~~~~~~~~~ 229 (681)
.|++++|.+..+|..
T Consensus 176 ~L~l~~n~l~~l~~~ 190 (332)
T 2ft3_A 176 YLRISEAKLTGIPKD 190 (332)
T ss_dssp CCBCCSSBCSSCCSS
T ss_pred EEECcCCCCCccCcc
Confidence 888888877665543
No 46
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=2.7e-21 Score=196.87 Aligned_cols=175 Identities=23% Similarity=0.324 Sum_probs=140.8
Q ss_pred CCCccEEEccCCCCccCCCCC-CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEEEcc
Q 005708 35 FEDLTGISLMFNDIHEVPDEL-ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLRTLSLH 113 (681)
Q Consensus 35 l~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~ 113 (681)
..+++.|++++|.+..+|..+ .+++|++|++++|.+..+|.. |+++++|++|++++|.+..+|..++++++|++|+++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT-MQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSC-GGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHH-HhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 367889999999988888766 788999999999988888875 588899999999999888888888999999999999
Q ss_pred CCCCCCCCc-ccC---------CCCCccEEEcccCCCcccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEc
Q 005708 114 DCRRFGDLP-LIG---------ELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYM 183 (681)
Q Consensus 114 ~~~~~~~l~-~l~---------~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l 183 (681)
+|...+.+| .++ ++++|++|++++|.++.+|..++++++|++|++++|. +..+|.. ++++++|++|++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~-l~~l~~L~~L~L 236 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPA-IHHLPKLEELDL 236 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGG-GGGCTTCCEEEC
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchh-hccCCCCCEEEC
Confidence 887777777 444 4888999999988888888888888899999998855 4467766 788888888888
Q ss_pred ccCcccccccchhhhhhccchhhhcCCCCCcEEEEeCCCC
Q 005708 184 SHSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKG 223 (681)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 223 (681)
++|... ...+..++.+++|+.|++++|..
T Consensus 237 s~n~~~-----------~~~p~~~~~l~~L~~L~L~~n~~ 265 (328)
T 4fcg_A 237 RGCTAL-----------RNYPPIFGGRAPLKRLILKDCSN 265 (328)
T ss_dssp TTCTTC-----------CBCCCCTTCCCCCCEEECTTCTT
T ss_pred cCCcch-----------hhhHHHhcCCCCCCEEECCCCCc
Confidence 887532 24455677777777777776543
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=5.8e-21 Score=194.40 Aligned_cols=212 Identities=22% Similarity=0.293 Sum_probs=184.4
Q ss_pred eEEEeCCcccCCCC-CCCCCCccEEEccCCCCccCCCCC-CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCC-
Q 005708 18 FMIKAGVELKDWPS-INTFEDLTGISLMFNDIHEVPDEL-ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRG- 94 (681)
Q Consensus 18 ~~~~~~~~~~~~~~-~~~l~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~- 94 (681)
.+.-.++.+..+|. +..+++|++|++++|.+..+|..+ .+++|++|++++|.+..+|.. |+++++|++|++++|.+
T Consensus 85 ~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~~~ 163 (328)
T 4fcg_A 85 ALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPAS-IASLNRLRELSIRACPEL 163 (328)
T ss_dssp EEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGG-GGGCTTCCEEEEEEETTC
T ss_pred EEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHH-HhcCcCCCEEECCCCCCc
Confidence 34445566777775 778999999999999999998876 899999999999999999887 69999999999999765
Q ss_pred CCCCccccC---------CCCCcEEEccCCCCCCCCc-ccCCCCCccEEEcccCCCcccchhhcCCccCcEEeccCCCCC
Q 005708 95 FSLPSSLSF---------LINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCVHL 164 (681)
Q Consensus 95 ~~lp~~i~~---------l~~L~~L~L~~~~~~~~l~-~l~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~ 164 (681)
+.+|..++. +++|++|++++|. ++.+| .++++++|++|++++|.++.+|..++.+++|++|++++|+..
T Consensus 164 ~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~ 242 (328)
T 4fcg_A 164 TELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTAL 242 (328)
T ss_dssp CCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTC
T ss_pred cccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcch
Confidence 788887765 9999999999998 77888 899999999999999999999999999999999999999999
Q ss_pred CccChhhhcCCCCCcEEEcccCcccccccchhhhhhccchhhhcCCCCCcEEEEeCCCC-CCCCCC-CCCCCccEEEEEe
Q 005708 165 ELIPRDVLSSLRKLEELYMSHSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKG-KIMPSD-MSFQNLTSFSIKI 242 (681)
Q Consensus 165 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~-~~l~~L~~L~l~~ 242 (681)
+.+|.. ++++++|++|++++|.. ....+..+..+++|+.|++++|.. ..+|.. ..+++|+.+.+..
T Consensus 243 ~~~p~~-~~~l~~L~~L~L~~n~~-----------~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 243 RNYPPI-FGGRAPLKRLILKDCSN-----------LLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CBCCCC-TTCCCCCCEEECTTCTT-----------CCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred hhhHHH-hcCCCCCCEEECCCCCc-----------hhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 888886 89999999999999863 235667899999999999999776 567766 7788888887654
Q ss_pred c
Q 005708 243 G 243 (681)
Q Consensus 243 ~ 243 (681)
.
T Consensus 311 ~ 311 (328)
T 4fcg_A 311 H 311 (328)
T ss_dssp G
T ss_pred H
Confidence 3
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=1.3e-21 Score=202.16 Aligned_cols=197 Identities=19% Similarity=0.187 Sum_probs=135.1
Q ss_pred CCccEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCC-CccccCCCCCcEEEccC
Q 005708 36 EDLTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSL-PSSLSFLINLRTLSLHD 114 (681)
Q Consensus 36 ~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~ 114 (681)
+.....+.+++.++.+|.... ++|++|++++|.+..++...|.++++|++|++++|.+..+ |..++++++|++|++++
T Consensus 31 ~~~~~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 31 DRNGICKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp CTTSEEECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCCeEeeCCCCCccccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence 334456777777777776543 5788888888887777766677888888888888877555 45677788888888888
Q ss_pred CCCCCCCc--ccCCCCCccEEEcccCCCcccch--hhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcccc
Q 005708 115 CRRFGDLP--LIGELSLLEILDLSESDVSEIPV--SFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHW 190 (681)
Q Consensus 115 ~~~~~~l~--~l~~L~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 190 (681)
|. ++.+| .++++++|++|++++|.++.+|. .+.++++|++|++++|..+..++...+.++++|++|++++|...
T Consensus 110 n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~- 187 (353)
T 2z80_A 110 NY-LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ- 187 (353)
T ss_dssp SC-CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC-
T ss_pred Cc-CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC-
Confidence 77 66666 37778888888888887777776 57778888888888765566665555777778888887777531
Q ss_pred cccchhhhhhccchhhhcCCCCCcEEEEeCCCCCCCCCC--CCCCCccEEEEEecCC
Q 005708 191 QFESEEDARSNAKFIELGALSRLTSLHIDIPKGKIMPSD--MSFQNLTSFSIKIGDL 245 (681)
Q Consensus 191 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~~~~~ 245 (681)
...+..+..+++|++|++++|.+..++.. ..+++|+.|++.++..
T Consensus 188 ----------~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 234 (353)
T 2z80_A 188 ----------SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 234 (353)
T ss_dssp ----------EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBC
T ss_pred ----------ccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcc
Confidence 13355677777777777777765444332 2345555555554443
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=3.5e-20 Score=189.47 Aligned_cols=201 Identities=19% Similarity=0.251 Sum_probs=160.8
Q ss_pred CcccCCCCCCCCCCccEEEccCCCCccCCCC-C-CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccc
Q 005708 24 VELKDWPSINTFEDLTGISLMFNDIHEVPDE-L-ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSL 101 (681)
Q Consensus 24 ~~~~~~~~~~~l~~lr~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i 101 (681)
..+..+|.- -.+.++.|++++|.+..++.. + .+++|++|++++|.+..+++..|+.+++|++|++++|++..+|..+
T Consensus 41 ~~l~~lp~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~ 119 (330)
T 1xku_A 41 LGLEKVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM 119 (330)
T ss_dssp SCCCSCCCS-CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC
T ss_pred CCccccCcc-CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhh
Confidence 456666642 237899999999999988763 3 8999999999999999886666899999999999999999999877
Q ss_pred cCCCCCcEEEccCCCCCCCCc--ccCCCCCccEEEcccCCCc---ccchhhcCCccCcEEeccCCCCCCccChhhhcCCC
Q 005708 102 SFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSESDVS---EIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLR 176 (681)
Q Consensus 102 ~~l~~L~~L~L~~~~~~~~l~--~l~~L~~L~~L~l~~~~i~---~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~ 176 (681)
. ++|++|++++|. ++.++ .++++++|++|++++|.+. ..+..+.++++|++|++++|. +..+|.. + .+
T Consensus 120 ~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~-~--~~ 192 (330)
T 1xku_A 120 P--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQG-L--PP 192 (330)
T ss_dssp C--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSS-C--CT
T ss_pred c--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCcc-c--cc
Confidence 5 799999999998 66666 6899999999999999886 446789999999999999954 5677764 2 38
Q ss_pred CCcEEEcccCcccccccchhhhhhccchhhhcCCCCCcEEEEeCCCCCCCCCC--CCCCCccEEEEEec
Q 005708 177 KLEELYMSHSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKGKIMPSD--MSFQNLTSFSIKIG 243 (681)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~~~ 243 (681)
+|++|++++|.+. ...+..+..+++|+.|++++|.+..++.. ..+++|+.|++.++
T Consensus 193 ~L~~L~l~~n~l~-----------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 250 (330)
T 1xku_A 193 SLTELHLDGNKIT-----------KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250 (330)
T ss_dssp TCSEEECTTSCCC-----------EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS
T ss_pred cCCEEECCCCcCC-----------ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC
Confidence 9999999998642 13456788999999999999987655432 33444444444433
No 50
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.85 E-value=1.2e-20 Score=200.83 Aligned_cols=189 Identities=24% Similarity=0.335 Sum_probs=151.4
Q ss_pred CccEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCC-ccccCCCCCcEEEccCC
Q 005708 37 DLTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLP-SSLSFLINLRTLSLHDC 115 (681)
Q Consensus 37 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~ 115 (681)
..+.++.++..+..+|.... ++++.|++++|.+..++...|.++++|++|+|++|.+..++ ..+.++++|++|++++|
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 35678888888888887664 78999999999999887777899999999999999997665 67889999999999999
Q ss_pred CCCCCCc--ccCCCCCccEEEcccCCCcccch-hhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcccccc
Q 005708 116 RRFGDLP--LIGELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHWQF 192 (681)
Q Consensus 116 ~~~~~l~--~l~~L~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 192 (681)
. ++.+| .+.++++|++|++++|.++.+|. .+.++++|++|++++|+.+..++...+.++++|++|++++|.+.
T Consensus 123 ~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~--- 198 (440)
T 3zyj_A 123 R-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR--- 198 (440)
T ss_dssp C-CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS---
T ss_pred c-CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc---
Confidence 8 77776 68999999999999999988865 68889999999999988888888877889999999999888542
Q ss_pred cchhhhhhccchhhhcCCCCCcEEEEeCCCCCCCCCC--CCCCCccEEEE
Q 005708 193 ESEEDARSNAKFIELGALSRLTSLHIDIPKGKIMPSD--MSFQNLTSFSI 240 (681)
Q Consensus 193 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l 240 (681)
.+..+..+++|+.|++++|.+..++.. ..+++|+.|++
T Consensus 199 ----------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 238 (440)
T 3zyj_A 199 ----------EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM 238 (440)
T ss_dssp ----------SCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred ----------cccccCCCcccCEEECCCCccCccChhhhccCccCCEEEC
Confidence 223577888888888888877655332 33344444433
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=3.3e-21 Score=195.01 Aligned_cols=175 Identities=20% Similarity=0.279 Sum_probs=126.9
Q ss_pred CCccEEEccCCCCc---cCCCCC-CCCCCcEEEccC-CCCC-CCChHHHhCCCCccEEEecCCCCC-CCCccccCCCCCc
Q 005708 36 EDLTGISLMFNDIH---EVPDEL-ECPKLQALFLQE-NSPL-AIPDRFFQGMKDLKVLDLGGIRGF-SLPSSLSFLINLR 108 (681)
Q Consensus 36 ~~lr~L~l~~~~~~---~l~~~~-~~~~Lr~L~l~~-~~~~-~l~~~~~~~l~~Lr~L~L~~~~~~-~lp~~i~~l~~L~ 108 (681)
.+++.|+++++.+. .+|..+ .+++|++|++++ |.+. .+|.. |+++++|++|++++|.+. .+|..++++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 56778888888776 355555 778888888874 6665 45554 578888888888888884 7777788888888
Q ss_pred EEEccCCCCCCCCc-ccCCCCCccEEEcccCCCc-ccchhhcCCc-cCcEEeccCCCCCCccChhhhcCCCCCcEEEccc
Q 005708 109 TLSLHDCRRFGDLP-LIGELSLLEILDLSESDVS-EIPVSFGRLG-HLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSH 185 (681)
Q Consensus 109 ~L~L~~~~~~~~l~-~l~~L~~L~~L~l~~~~i~-~lp~~i~~l~-~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~ 185 (681)
+|++++|.....+| .++++++|++|++++|.++ .+|..++.++ +|++|++++|...+.+|.. +..+. |+.|++++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLSR 206 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECCS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECcC
Confidence 88888887444666 6778888888888888877 7777788877 7888888886655556655 66666 88888877
Q ss_pred CcccccccchhhhhhccchhhhcCCCCCcEEEEeCCCCC
Q 005708 186 SFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKGK 224 (681)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 224 (681)
|.+. ...+..+..+++|+.|++++|.+.
T Consensus 207 N~l~-----------~~~~~~~~~l~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 207 NMLE-----------GDASVLFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp SEEE-----------ECCGGGCCTTSCCSEEECCSSEEC
T ss_pred Cccc-----------CcCCHHHhcCCCCCEEECCCCcee
Confidence 7531 134556777778888888777654
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.84 E-value=1.5e-20 Score=200.80 Aligned_cols=176 Identities=25% Similarity=0.287 Sum_probs=146.6
Q ss_pred CccEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCC-CccccCCCCCcEEEccCC
Q 005708 37 DLTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSL-PSSLSFLINLRTLSLHDC 115 (681)
Q Consensus 37 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~ 115 (681)
..+.++.++..+..+|.... +++++|++++|.+..++...|.++++|++|+|++|.+..+ |..+.++++|++|++++|
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCcEEEECCCCcCccCCCCC-CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 35678888888888887554 7899999999999988777789999999999999999665 477889999999999999
Q ss_pred CCCCCCc--ccCCCCCccEEEcccCCCcccch-hhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcccccc
Q 005708 116 RRFGDLP--LIGELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHWQF 192 (681)
Q Consensus 116 ~~~~~l~--~l~~L~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 192 (681)
. ++.+| .++++++|++|++++|.++.+|. .+.++++|++|++++|+.++.++...+.++++|++|++++|.+.
T Consensus 134 ~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~--- 209 (452)
T 3zyi_A 134 W-LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK--- 209 (452)
T ss_dssp C-CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS---
T ss_pred c-CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc---
Confidence 8 66776 58899999999999999998876 68899999999999988888888877889999999999888642
Q ss_pred cchhhhhhccchhhhcCCCCCcEEEEeCCCCCCCC
Q 005708 193 ESEEDARSNAKFIELGALSRLTSLHIDIPKGKIMP 227 (681)
Q Consensus 193 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 227 (681)
....+..+++|+.|++++|.+..++
T Consensus 210 ----------~~~~~~~l~~L~~L~Ls~N~l~~~~ 234 (452)
T 3zyi_A 210 ----------DMPNLTPLVGLEELEMSGNHFPEIR 234 (452)
T ss_dssp ----------SCCCCTTCTTCCEEECTTSCCSEEC
T ss_pred ----------ccccccccccccEEECcCCcCcccC
Confidence 2235778888888888888765443
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.84 E-value=1.9e-20 Score=187.09 Aligned_cols=207 Identities=25% Similarity=0.360 Sum_probs=158.2
Q ss_pred CcccCCCCCCCCCCccEEEccCCCCccCCCC-C-CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCC-CCCC-Cc
Q 005708 24 VELKDWPSINTFEDLTGISLMFNDIHEVPDE-L-ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIR-GFSL-PS 99 (681)
Q Consensus 24 ~~~~~~~~~~~l~~lr~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~-~~~l-p~ 99 (681)
.++..+|. ...+++++|++++|.+..++.. + .+++|++|++++|.+..+++..|..+++|++|++++|. +..+ |.
T Consensus 21 ~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~ 99 (285)
T 1ozn_A 21 QGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA 99 (285)
T ss_dssp SCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred CCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHH
Confidence 44666663 3456888889988888877653 3 78888999998888887766667888889999998887 7666 66
Q ss_pred cccCCCCCcEEEccCCCCCCCC-c-ccCCCCCccEEEcccCCCcccchh-hcCCccCcEEeccCCCCCCccChhhhcCCC
Q 005708 100 SLSFLINLRTLSLHDCRRFGDL-P-LIGELSLLEILDLSESDVSEIPVS-FGRLGHLRLLDLTDCVHLELIPRDVLSSLR 176 (681)
Q Consensus 100 ~i~~l~~L~~L~L~~~~~~~~l-~-~l~~L~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~ 176 (681)
.+..+++|++|++++|. +..+ | .++++++|++|++++|.++.+|.. ++.+++|++|++++| .+..++...+.+++
T Consensus 100 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~ 177 (285)
T 1ozn_A 100 TFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLH 177 (285)
T ss_dssp TTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCT
T ss_pred HhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC-cccccCHHHhcCcc
Confidence 78888889999998888 5555 3 688888899999988888877654 788888999998885 45567665578888
Q ss_pred CCcEEEcccCcccccccchhhhhhccchhhhcCCCCCcEEEEeCCCCCCCCCC--CCCCCccEEEEEecC
Q 005708 177 KLEELYMSHSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKGKIMPSD--MSFQNLTSFSIKIGD 244 (681)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~~~~ 244 (681)
+|++|++++|.+. ...+..+..+++|+.|++++|.+..++.. ..+++|+.|++.++.
T Consensus 178 ~L~~L~l~~n~l~-----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 178 SLDRLLLHQNRVA-----------HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TCCEEECCSSCCC-----------EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred ccCEEECCCCccc-----------ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 8888888888532 13456778888888888888888766643 566777777776543
No 54
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.84 E-value=1.9e-22 Score=224.09 Aligned_cols=40 Identities=25% Similarity=0.317 Sum_probs=25.5
Q ss_pred CCCCccEEEEecCCCcceecchhhHhhhccccEeEEccccc
Q 005708 511 SLGNLVSITIRGCGQLRQLFTTSMVKSLVRLESLEVSSCPT 551 (681)
Q Consensus 511 ~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~ 551 (681)
.+++|+.|++++|+. +..........+++|++|++++|+.
T Consensus 479 ~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 479 GCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred cCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 467777777777764 3322223445677788888877764
No 55
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.84 E-value=5.1e-23 Score=221.22 Aligned_cols=158 Identities=17% Similarity=0.157 Sum_probs=89.4
Q ss_pred CCCcEEEccCCCCCCCC-hHHHhCCCCccEEEecCCCCC-----CCCccccCCCCCcEEEccCCCCCCCC-c--ccCCCC
Q 005708 58 PKLQALFLQENSPLAIP-DRFFQGMKDLKVLDLGGIRGF-----SLPSSLSFLINLRTLSLHDCRRFGDL-P--LIGELS 128 (681)
Q Consensus 58 ~~Lr~L~l~~~~~~~l~-~~~~~~l~~Lr~L~L~~~~~~-----~lp~~i~~l~~L~~L~L~~~~~~~~l-~--~l~~L~ 128 (681)
++|++|+++++.+...+ ..+|..+++|++|++++|.+. .++..+..+++|++|++++|. +++. + ....+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHh
Confidence 45666666666655332 233566677777777777664 345556666777777777766 4332 1 222333
Q ss_pred ----CccEEEcccCCCc-----ccchhhcCCccCcEEeccCCCCCCccCh----hhhcCCCCCcEEEcccCcccccccch
Q 005708 129 ----LLEILDLSESDVS-----EIPVSFGRLGHLRLLDLTDCVHLELIPR----DVLSSLRKLEELYMSHSFCHWQFESE 195 (681)
Q Consensus 129 ----~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~ 195 (681)
+|++|++++|.++ .+|..+..+++|++|++++|......+. ......++|++|++++|.+...
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~---- 157 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA---- 157 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG----
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHH----
Confidence 5777777777666 3466677777777777777543211111 1112245677777777643211
Q ss_pred hhhhhccchhhhcCCCCCcEEEEeCCCC
Q 005708 196 EDARSNAKFIELGALSRLTSLHIDIPKG 223 (681)
Q Consensus 196 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 223 (681)
.....+..+..+++|++|++++|.+
T Consensus 158 ---~~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 158 ---SCEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp ---GHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred ---HHHHHHHHHhhCCCCCEEECcCCCc
Confidence 1113345566667777777766643
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=5.8e-20 Score=189.64 Aligned_cols=210 Identities=22% Similarity=0.250 Sum_probs=166.9
Q ss_pred eEEEeCCcccCCCCCCCCCCccEEEccCCCCccCCCC-C-CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCC
Q 005708 18 FMIKAGVELKDWPSINTFEDLTGISLMFNDIHEVPDE-L-ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGF 95 (681)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~lr~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~ 95 (681)
.....++.+..+|. .-.+++++|++++|.+..++.. + .+++|++|++++|.+..+++..|+++++|++|++++|++.
T Consensus 35 ~c~~~~~~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 35 ICKGSSGSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113 (353)
T ss_dssp EEECCSTTCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred EeeCCCCCcccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC
Confidence 33344456777775 3346899999999999988773 3 8999999999999999887777899999999999999999
Q ss_pred CCCcc-ccCCCCCcEEEccCCCCCCCCc---ccCCCCCccEEEcccC-CCccc-chhhcCCccCcEEeccCCCCCCccCh
Q 005708 96 SLPSS-LSFLINLRTLSLHDCRRFGDLP---LIGELSLLEILDLSES-DVSEI-PVSFGRLGHLRLLDLTDCVHLELIPR 169 (681)
Q Consensus 96 ~lp~~-i~~l~~L~~L~L~~~~~~~~l~---~l~~L~~L~~L~l~~~-~i~~l-p~~i~~l~~L~~L~L~~~~~~~~~~~ 169 (681)
.+|.. ++++++|++|++++|. ++.+| .++++++|++|++++| .+..+ |..++++++|++|++++|......|.
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 192 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred cCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence 88876 8899999999999998 77776 4889999999999998 57776 46799999999999999765444455
Q ss_pred hhhcCCCCCcEEEcccCcccccccchhhhhhccchh-hhcCCCCCcEEEEeCCCCCCCCCC-----CCCCCccEEEEEe
Q 005708 170 DVLSSLRKLEELYMSHSFCHWQFESEEDARSNAKFI-ELGALSRLTSLHIDIPKGKIMPSD-----MSFQNLTSFSIKI 242 (681)
Q Consensus 170 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~-----~~l~~L~~L~l~~ 242 (681)
. +.++++|++|++++|... ..+. .+..+++|+.|++++|.+..++.. .....++.+++..
T Consensus 193 ~-l~~l~~L~~L~l~~n~l~------------~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~ 258 (353)
T 2z80_A 193 S-LKSIQNVSHLILHMKQHI------------LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRN 258 (353)
T ss_dssp T-TTTCSEEEEEEEECSCST------------THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEES
T ss_pred H-HhccccCCeecCCCCccc------------cchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccc
Confidence 4 899999999999998641 2232 345689999999999988665432 2234455555443
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.83 E-value=1.3e-20 Score=190.39 Aligned_cols=174 Identities=21% Similarity=0.162 Sum_probs=92.6
Q ss_pred EEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCC---CccccCCCCCcEEEccCCC
Q 005708 40 GISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSL---PSSLSFLINLRTLSLHDCR 116 (681)
Q Consensus 40 ~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~l---p~~i~~l~~L~~L~L~~~~ 116 (681)
.++.+++.++.+|.... ++|++|++++|.+..+|..+|.++++|++|++++|.+..+ |..+..+++|++|++++|.
T Consensus 11 ~l~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp EEECCSSCCSSCCSCCC-TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred EEEcCCCCcccCCCCCC-CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence 45555555555554332 4556666666665555555555666666666666655433 3444455566666666655
Q ss_pred CCCCCc-ccCCCCCccEEEcccCCCcccch--hhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCccccccc
Q 005708 117 RFGDLP-LIGELSLLEILDLSESDVSEIPV--SFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHWQFE 193 (681)
Q Consensus 117 ~~~~l~-~l~~L~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 193 (681)
+..+| .+.++++|++|++++|.++.++. .+..+++|++|++++|... ..+...+.++++|++|++++|.+.
T Consensus 90 -i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~---- 163 (306)
T 2z66_A 90 -VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQ---- 163 (306)
T ss_dssp -EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCE-ECSTTTTTTCTTCCEEECTTCEEG----
T ss_pred -cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCC-ccchhhcccCcCCCEEECCCCccc----
Confidence 44444 45556666666666665555542 4555666666666654332 222222555566666666555431
Q ss_pred chhhhhhccchhhhcCCCCCcEEEEeCCCCCCC
Q 005708 194 SEEDARSNAKFIELGALSRLTSLHIDIPKGKIM 226 (681)
Q Consensus 194 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 226 (681)
....+..+..+++|+.|++++|.+..+
T Consensus 164 ------~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 190 (306)
T 2z66_A 164 ------ENFLPDIFTELRNLTFLDLSQCQLEQL 190 (306)
T ss_dssp ------GGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred ------cccchhHHhhCcCCCEEECCCCCcCCc
Confidence 112334455556666666666555443
No 58
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.83 E-value=5.2e-22 Score=220.58 Aligned_cols=86 Identities=10% Similarity=0.086 Sum_probs=53.2
Q ss_pred CCCccEEEEecCCCcceecchhhHhhhccccEeEEcccccccceeccccccccccCCCCcceeccccceeecccCCcccc
Q 005708 512 LGNLVSITIRGCGQLRQLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDDGGVGLQGASTEKITFPSLFIIQLCHLDSLAC 591 (681)
Q Consensus 512 ~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~ 591 (681)
+++|+.|++++|. +++.....+...+++|++|++++|+. .+.... .....+++|++|++++|+. +.
T Consensus 455 ~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~-----------~~~~~l~~L~~L~l~~~~~-~~ 520 (594)
T 2p1m_B 455 AKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALL-----------ANASKLETMRSLWMSSCSV-SF 520 (594)
T ss_dssp CTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHH-----------HTGGGGGGSSEEEEESSCC-BH
T ss_pred chhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHH-----------HHHHhCCCCCEEeeeCCCC-CH
Confidence 6889999999886 44433333447789999999999984 322110 0122378999999999986 32
Q ss_pred cccCCcccccccccccEEEecc
Q 005708 592 FFSAGSHATIEFLALAALLIID 613 (681)
Q Consensus 592 ~~~~~~~~~~~~~sL~~L~i~~ 613 (681)
-....+.. .+|.|+...+.+
T Consensus 521 ~~~~~l~~--~lp~l~i~~~~~ 540 (594)
T 2p1m_B 521 GACKLLGQ--KMPKLNVEVIDE 540 (594)
T ss_dssp HHHHHHHH--HCTTEEEEEECS
T ss_pred HHHHHHHH--hCCCCEEEEecC
Confidence 22122222 456665555443
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=8.9e-19 Score=191.88 Aligned_cols=256 Identities=19% Similarity=0.171 Sum_probs=172.6
Q ss_pred CccEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEEEccCCC
Q 005708 37 DLTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLRTLSLHDCR 116 (681)
Q Consensus 37 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~ 116 (681)
+++.|+++++.+..+|.... ++|++|++++|.+..+|. .+++|++|++++|++..+|. .+++|++|++++|.
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP 112 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc
Confidence 57889999999888887665 789999999998888876 57889999999998888887 67888999998887
Q ss_pred CCCCCcccCCCCCccEEEcccCCCcccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcccccccchh
Q 005708 117 RFGDLPLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHWQFESEE 196 (681)
Q Consensus 117 ~~~~l~~l~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 196 (681)
++.+|. .+.+|++|++++|.++.+|.. +++|++|++++|. +..+|. .+.+|+.|++++|.+.
T Consensus 113 -l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~----~~~~L~~L~L~~N~l~------- 174 (622)
T 3g06_A 113 -LTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPA----LPSELCKLWAYNNQLT------- 174 (622)
T ss_dssp -CCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCS-------
T ss_pred -CCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCC----ccCCCCEEECCCCCCC-------
Confidence 777776 678888999998888888864 4788888888854 445553 2467888888777531
Q ss_pred hhhhccchhhhcCCCCCcEEEEeCCCCCCCCCCCCCCCccEEEEEecCCcCCCchhHHHHHhhhccccccceeeeccccc
Q 005708 197 DARSNAKFIELGALSRLTSLHIDIPKGKIMPSDMSFQNLTSFSIKIGDLEEDPLSDFIELFLEKFNKRCSRAMGLSQDMR 276 (681)
Q Consensus 197 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~ 276 (681)
.++ ..+++|+.|++++|.+..+|.. +++|+.|.+..+....
T Consensus 175 -----~l~---~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~l~~----------------------------- 215 (622)
T 3g06_A 175 -----SLP---MLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTS----------------------------- 215 (622)
T ss_dssp -----CCC---CCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSS-----------------------------
T ss_pred -----CCc---ccCCCCcEEECCCCCCCCCCCc--cchhhEEECcCCcccc-----------------------------
Confidence 222 4457788888888777655542 2444444443322211
Q ss_pred hhhhHHHHHHHHhccceeecccccCcccccccccccccCCCcEEEEEecCCceEeeeccccccccccCccceeeeccccc
Q 005708 277 ISALHSWIKNLLLRSEILALAEVNDLENMVSDLANDGFNELMFLVIVRCNEMKCLVNSLERTRRVTLHKLEWLAIFLNQN 356 (681)
Q Consensus 277 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~ 356 (681)
. + ..+++|++|++++| .++.++ ..+++|++|++++| +
T Consensus 216 ----------------------------l-~----~~~~~L~~L~Ls~N-~L~~lp--------~~l~~L~~L~Ls~N-~ 252 (622)
T 3g06_A 216 ----------------------------L-P----ALPSGLKELIVSGN-RLTSLP--------VLPSELKELMVSGN-R 252 (622)
T ss_dssp ----------------------------C-C----CCCTTCCEEECCSS-CCSCCC--------CCCTTCCEEECCSS-C
T ss_pred ----------------------------c-C----CCCCCCCEEEccCC-ccCcCC--------CCCCcCcEEECCCC-C
Confidence 1 1 11456777777766 444332 23466777777766 3
Q ss_pred ccccccCcCCCCcCCCccEEEEeeCCCCCccccchHHhhcCCCcEEEEeeccC
Q 005708 357 LVEICHGQLPAGCLSNVKRLDVGDCGSMLKILPSHLVQSFQNLQRLRVGRCEL 409 (681)
Q Consensus 357 l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 409 (681)
++.+ |. .+++|+.|++++| .++.++. .+..+++|+.|++++++.
T Consensus 253 L~~l-----p~-~~~~L~~L~Ls~N-~L~~lp~--~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 253 LTSL-----PM-LPSGLLSLSVYRN-QLTRLPE--SLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp CSCC-----CC-CCTTCCEEECCSS-CCCSCCG--GGGGSCTTCEEECCSCCC
T ss_pred CCcC-----Cc-ccccCcEEeCCCC-CCCcCCH--HHhhccccCEEEecCCCC
Confidence 4332 22 4567777777774 4555532 245677777777777653
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.81 E-value=2e-19 Score=179.66 Aligned_cols=198 Identities=21% Similarity=0.280 Sum_probs=165.7
Q ss_pred cEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCC-CccccCCCCCcEEEccCCCC
Q 005708 39 TGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSL-PSSLSFLINLRTLSLHDCRR 117 (681)
Q Consensus 39 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~~ 117 (681)
+.++.+++.+..+|... .++|++|++++|.+..++...|..+++|++|++++|.+..+ |..++++++|++|++++|..
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 68889999999888654 47999999999999999887789999999999999999766 77899999999999999975
Q ss_pred CCCC-c-ccCCCCCccEEEcccCCCccc-chhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcccccccc
Q 005708 118 FGDL-P-LIGELSLLEILDLSESDVSEI-PVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHWQFES 194 (681)
Q Consensus 118 ~~~l-~-~l~~L~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 194 (681)
++.+ | .++++++|++|++++|.++.+ |..+.++++|++|++++|. +..++...++++++|++|++++|.+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~----- 166 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRIS----- 166 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC-----
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCccc-----
Confidence 7777 4 899999999999999999977 5678999999999999965 55677666889999999999998642
Q ss_pred hhhhhhccchhhhcCCCCCcEEEEeCCCCCCCC-CC-CCCCCccEEEEEecCCcCCC
Q 005708 195 EEDARSNAKFIELGALSRLTSLHIDIPKGKIMP-SD-MSFQNLTSFSIKIGDLEEDP 249 (681)
Q Consensus 195 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~-~~l~~L~~L~l~~~~~~~~~ 249 (681)
......+..+++|+.|++++|.+..+. .. ..+++|+.|++.++.....+
T Consensus 167 ------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 217 (285)
T 1ozn_A 167 ------SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217 (285)
T ss_dssp ------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred ------ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC
Confidence 122335888999999999999987653 33 56788888888777654443
No 61
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.81 E-value=3e-19 Score=180.10 Aligned_cols=202 Identities=18% Similarity=0.249 Sum_probs=175.2
Q ss_pred cCCCCCCCCCCccEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccCCCC
Q 005708 27 KDWPSINTFEDLTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLIN 106 (681)
Q Consensus 27 ~~~~~~~~l~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~ 106 (681)
........++++++|+++++.+..++....+++|++|++++|.+..++. |..+++|++|++++|.+..++ .++.+++
T Consensus 32 ~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~ 108 (308)
T 1h6u_A 32 TDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQS 108 (308)
T ss_dssp TSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTT
T ss_pred CceecHHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCC
Confidence 3334556678999999999999988865589999999999999999887 799999999999999998876 6899999
Q ss_pred CcEEEccCCCCCCCCcccCCCCCccEEEcccCCCcccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccC
Q 005708 107 LRTLSLHDCRRFGDLPLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHS 186 (681)
Q Consensus 107 L~~L~L~~~~~~~~l~~l~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 186 (681)
|++|++++|. ++.++.++++++|++|++++|.++.++. ++.+++|++|++++|. +..++. +.++++|+.|++++|
T Consensus 109 L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 109 IKTLDLTSTQ-ITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDLTP--LANLSKLTTLKADDN 183 (308)
T ss_dssp CCEEECTTSC-CCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSS
T ss_pred CCEEECCCCC-CCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-CCCChh--hcCCCCCCEEECCCC
Confidence 9999999999 8888889999999999999999998876 8999999999999964 556666 899999999999998
Q ss_pred cccccccchhhhhhccchhhhcCCCCCcEEEEeCCCCCCCCCCCCCCCccEEEEEecCCcCCC
Q 005708 187 FCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKGKIMPSDMSFQNLTSFSIKIGDLEEDP 249 (681)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 249 (681)
.+. ....+..+++|++|++++|.+..++....+++|+.|++.++.....+
T Consensus 184 ~l~-------------~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 184 KIS-------------DISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp CCC-------------CCGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEECCC
T ss_pred ccC-------------cChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeeecCC
Confidence 642 22238899999999999999988776678899999999988765443
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=3.4e-19 Score=189.66 Aligned_cols=212 Identities=25% Similarity=0.352 Sum_probs=177.4
Q ss_pred eCCcccCCCCCCCCCCccEEEccCCCCccCCCC-C-CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCc
Q 005708 22 AGVELKDWPSINTFEDLTGISLMFNDIHEVPDE-L-ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPS 99 (681)
Q Consensus 22 ~~~~~~~~~~~~~l~~lr~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~ 99 (681)
.+..+..+|. .-.++++.|++++|.+..++.. + .+++|++|++++|.+..++...|.++++|++|+|++|++..+|.
T Consensus 51 ~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 129 (440)
T 3zyj_A 51 VRKNLREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPN 129 (440)
T ss_dssp CSCCCSSCCS-CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCT
T ss_pred CCCCcCcCCC-CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCH
Confidence 3455677775 2337899999999999987643 3 89999999999999999988889999999999999999988876
Q ss_pred -cccCCCCCcEEEccCCCCCCCCc--ccCCCCCccEEEccc-CCCcccch-hhcCCccCcEEeccCCCCCCccChhhhcC
Q 005708 100 -SLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSE-SDVSEIPV-SFGRLGHLRLLDLTDCVHLELIPRDVLSS 174 (681)
Q Consensus 100 -~i~~l~~L~~L~L~~~~~~~~l~--~l~~L~~L~~L~l~~-~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~l~~ 174 (681)
.+..+++|++|++++|. ++.++ .+.++++|++|++++ +.+..+|. .+.++++|++|++++| .+..+|. +..
T Consensus 130 ~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~ 205 (440)
T 3zyj_A 130 GAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPN--LTP 205 (440)
T ss_dssp TTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCC--CTT
T ss_pred hHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccc--cCC
Confidence 68999999999999999 77776 799999999999999 46677765 6899999999999996 4667875 899
Q ss_pred CCCCcEEEcccCcccccccchhhhhhccchhhhcCCCCCcEEEEeCCCCCCCCCC--CCCCCccEEEEEecCCcCCC
Q 005708 175 LRKLEELYMSHSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKGKIMPSD--MSFQNLTSFSIKIGDLEEDP 249 (681)
Q Consensus 175 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~ 249 (681)
+++|++|++++|.+. ...+..+..+++|+.|++++|.+..++.. ..+++|+.|++.++.....+
T Consensus 206 l~~L~~L~Ls~N~l~-----------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 271 (440)
T 3zyj_A 206 LIKLDELDLSGNHLS-----------AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP 271 (440)
T ss_dssp CSSCCEEECTTSCCC-----------EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC
T ss_pred CcccCEEECCCCccC-----------ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC
Confidence 999999999998642 23456789999999999999998776654 67788999988887665544
No 63
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.81 E-value=5.4e-19 Score=178.56 Aligned_cols=232 Identities=19% Similarity=0.193 Sum_probs=187.4
Q ss_pred eCCcccCCCCCCCCCCccEEEccCCCCccCCCCC--CCCCCcEEEccCCCCCCC---ChHHHhCCCCccEEEecCCCCCC
Q 005708 22 AGVELKDWPSINTFEDLTGISLMFNDIHEVPDEL--ECPKLQALFLQENSPLAI---PDRFFQGMKDLKVLDLGGIRGFS 96 (681)
Q Consensus 22 ~~~~~~~~~~~~~l~~lr~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~l---~~~~~~~l~~Lr~L~L~~~~~~~ 96 (681)
.+.++..+|. ...+++++|++++|.+..++... .+++|++|++++|.+..+ +.. +..+++|++|++++|.+..
T Consensus 15 ~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~i~~ 92 (306)
T 2z66_A 15 NSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFNGVIT 92 (306)
T ss_dssp CSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCSCSEEE
T ss_pred CCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCCCcccc
Confidence 3455677775 33478999999999999998754 899999999999998855 454 5689999999999999999
Q ss_pred CCccccCCCCCcEEEccCCCCCCCCc---ccCCCCCccEEEcccCCCccc-chhhcCCccCcEEeccCCCCCC-ccChhh
Q 005708 97 LPSSLSFLINLRTLSLHDCRRFGDLP---LIGELSLLEILDLSESDVSEI-PVSFGRLGHLRLLDLTDCVHLE-LIPRDV 171 (681)
Q Consensus 97 lp~~i~~l~~L~~L~L~~~~~~~~l~---~l~~L~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~-~~~~~~ 171 (681)
+|..+..+++|++|++++|. ++.++ .+.++++|++|++++|.+... |..+..+++|++|++++|...+ ..|..
T Consensus 93 l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~- 170 (306)
T 2z66_A 93 MSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI- 170 (306)
T ss_dssp EEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC-
T ss_pred ChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH-
Confidence 99999999999999999998 66654 689999999999999999854 5678999999999999976554 35554
Q ss_pred hcCCCCCcEEEcccCcccccccchhhhhhccchhhhcCCCCCcEEEEeCCCCCCCCCC--CCCCCccEEEEEecCCcCCC
Q 005708 172 LSSLRKLEELYMSHSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKGKIMPSD--MSFQNLTSFSIKIGDLEEDP 249 (681)
Q Consensus 172 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~ 249 (681)
+.++++|++|++++|.+. ...+..+..+++|++|++++|.+..++.. ..+++|+.|++.++......
T Consensus 171 ~~~l~~L~~L~Ls~n~l~-----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 239 (306)
T 2z66_A 171 FTELRNLTFLDLSQCQLE-----------QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 239 (306)
T ss_dssp CTTCTTCCEEECTTSCCC-----------EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCS
T ss_pred HhhCcCCCEEECCCCCcC-----------CcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccC
Confidence 899999999999998642 13356788999999999999999877764 67899999999988765543
Q ss_pred chhHHHHHhhhccc-cccceeeecccc
Q 005708 250 LSDFIELFLEKFNK-RCSRAMGLSQDM 275 (681)
Q Consensus 250 ~~~~~~~~~~~~~~-~~l~~l~l~~~~ 275 (681)
... .... .+++.+++.++.
T Consensus 240 ~~~-------~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 240 KQE-------LQHFPSSLAFLNLTQND 259 (306)
T ss_dssp SSS-------CCCCCTTCCEEECTTCC
T ss_pred HHH-------HHhhhccCCEEEccCCC
Confidence 211 1133 478888888753
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=4.1e-19 Score=189.74 Aligned_cols=211 Identities=25% Similarity=0.330 Sum_probs=175.8
Q ss_pred CCcccCCCCCCCCCCccEEEccCCCCccCCCC-C-CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCcc
Q 005708 23 GVELKDWPSINTFEDLTGISLMFNDIHEVPDE-L-ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSS 100 (681)
Q Consensus 23 ~~~~~~~~~~~~l~~lr~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~ 100 (681)
+.++..+|. .-.++++.|++++|.+..++.. + .+++|++|++++|.+..++...|.++++|++|+|++|.+..+|..
T Consensus 63 ~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 141 (452)
T 3zyi_A 63 RRGLSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSG 141 (452)
T ss_dssp SSCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTT
T ss_pred CCCcCccCC-CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChh
Confidence 345666664 2336899999999999987543 3 899999999999999998877799999999999999999887654
Q ss_pred -ccCCCCCcEEEccCCCCCCCCc--ccCCCCCccEEEccc-CCCcccch-hhcCCccCcEEeccCCCCCCccChhhhcCC
Q 005708 101 -LSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSE-SDVSEIPV-SFGRLGHLRLLDLTDCVHLELIPRDVLSSL 175 (681)
Q Consensus 101 -i~~l~~L~~L~L~~~~~~~~l~--~l~~L~~L~~L~l~~-~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l 175 (681)
++++++|++|++++|. ++.+| .+.++++|++|++++ +.+..+|. .+..+++|++|++++|. +..+|. +..+
T Consensus 142 ~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~l 217 (452)
T 3zyi_A 142 AFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPN--LTPL 217 (452)
T ss_dssp TSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCC--CTTC
T ss_pred hhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-cccccc--cccc
Confidence 8899999999999999 77776 799999999999999 56777765 58899999999999964 556775 8899
Q ss_pred CCCcEEEcccCcccccccchhhhhhccchhhhcCCCCCcEEEEeCCCCCCCCCC--CCCCCccEEEEEecCCcCCC
Q 005708 176 RKLEELYMSHSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKGKIMPSD--MSFQNLTSFSIKIGDLEEDP 249 (681)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~ 249 (681)
++|++|++++|.+. ...+..+..+++|+.|++++|.+..++.. ..+++|+.|++.++.....+
T Consensus 218 ~~L~~L~Ls~N~l~-----------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 282 (452)
T 3zyi_A 218 VGLEELEMSGNHFP-----------EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP 282 (452)
T ss_dssp TTCCEEECTTSCCS-----------EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred ccccEEECcCCcCc-----------ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC
Confidence 99999999998642 24467789999999999999998766544 67889999999887765544
No 65
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.80 E-value=8.8e-19 Score=174.79 Aligned_cols=198 Identities=21% Similarity=0.227 Sum_probs=171.2
Q ss_pred CCCCCCCccEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEE
Q 005708 31 SINTFEDLTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLRTL 110 (681)
Q Consensus 31 ~~~~l~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L 110 (681)
.+..+++++.++++++.++.+|.... ++++.|++++|.+..++...|..+++|++|++++|.+..++.. +.+++|++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred cccccCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 35677899999999999999987664 7999999999999988877789999999999999999888765 889999999
Q ss_pred EccCCCCCCCCc-ccCCCCCccEEEcccCCCcccc-hhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcc
Q 005708 111 SLHDCRRFGDLP-LIGELSLLEILDLSESDVSEIP-VSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFC 188 (681)
Q Consensus 111 ~L~~~~~~~~l~-~l~~L~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 188 (681)
++++|. ++.+| .+.++++|++|++++|.++.+| ..|..+++|++|++++| .+..+|...+.++++|+.|++++|.+
T Consensus 83 ~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 83 DLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp ECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred ECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCcC
Confidence 999998 78888 7899999999999999999887 56999999999999995 46678877688999999999999865
Q ss_pred cccccchhhhhhccch-hhhcCCCCCcEEEEeCCCCCCCCCC-CCCCCccEEEEEecC
Q 005708 189 HWQFESEEDARSNAKF-IELGALSRLTSLHIDIPKGKIMPSD-MSFQNLTSFSIKIGD 244 (681)
Q Consensus 189 ~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~L~~L~l~~~~ 244 (681)
. ..+ ..+..+++|+.|++++|.+..+|.. ....+|+.+.+.++.
T Consensus 161 ~------------~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 161 T------------ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp S------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred C------------ccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 2 233 3467899999999999999988877 566788888887653
No 66
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=9.8e-20 Score=184.18 Aligned_cols=200 Identities=22% Similarity=0.329 Sum_probs=169.9
Q ss_pred CCCCCCCccEEEccC-CCCc-cCCCCC-CCCCCcEEEccCCCCC-CCChHHHhCCCCccEEEecCCCCC-CCCccccCCC
Q 005708 31 SINTFEDLTGISLMF-NDIH-EVPDEL-ECPKLQALFLQENSPL-AIPDRFFQGMKDLKVLDLGGIRGF-SLPSSLSFLI 105 (681)
Q Consensus 31 ~~~~l~~lr~L~l~~-~~~~-~l~~~~-~~~~Lr~L~l~~~~~~-~l~~~~~~~l~~Lr~L~L~~~~~~-~lp~~i~~l~ 105 (681)
.+..+++|++|++++ |.+. .+|..+ .+++|++|++++|.+. .+|.. |.++++|++|++++|.+. .+|..++.++
T Consensus 71 ~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 149 (313)
T 1ogq_A 71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVTLDFSYNALSGTLPPSISSLP 149 (313)
T ss_dssp GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG-GGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHH-HhCCCCCCEEeCCCCccCCcCChHHhcCC
Confidence 588899999999995 8876 566656 8999999999999998 56665 799999999999999995 8899999999
Q ss_pred CCcEEEccCCCCCCCCc-ccCCCC-CccEEEcccCCCc-ccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEE
Q 005708 106 NLRTLSLHDCRRFGDLP-LIGELS-LLEILDLSESDVS-EIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELY 182 (681)
Q Consensus 106 ~L~~L~L~~~~~~~~l~-~l~~L~-~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~ 182 (681)
+|++|++++|.....+| .+++++ +|++|++++|.++ .+|..+..+. |++|++++|...+..|. .+.++++|+.|+
T Consensus 150 ~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~ 227 (313)
T 1ogq_A 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASV-LFGSDKNTQKIH 227 (313)
T ss_dssp TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGG-GCCTTSCCSEEE
T ss_pred CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCH-HHhcCCCCCEEE
Confidence 99999999999444777 899998 9999999999998 7889999997 99999999765545554 489999999999
Q ss_pred cccCcccccccchhhhhhccchhhhcCCCCCcEEEEeCCCCC-CCCCC-CCCCCccEEEEEecCC
Q 005708 183 MSHSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKGK-IMPSD-MSFQNLTSFSIKIGDL 245 (681)
Q Consensus 183 l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~-~~l~~L~~L~l~~~~~ 245 (681)
+++|.+. ..+..+..+++|++|++++|.+. .+|.. ..+++|+.|++.++..
T Consensus 228 L~~N~l~------------~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 228 LAKNSLA------------FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp CCSSEEC------------CBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred CCCCcee------------eecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence 9999652 23445788999999999999986 56655 6788899998887654
No 67
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.79 E-value=2.8e-18 Score=169.70 Aligned_cols=194 Identities=23% Similarity=0.362 Sum_probs=149.8
Q ss_pred CccEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCcc-ccCCCCCcEEEccCC
Q 005708 37 DLTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSS-LSFLINLRTLSLHDC 115 (681)
Q Consensus 37 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~-i~~l~~L~~L~L~~~ 115 (681)
+.+.++++++.+..+|.... ++++.|++++|.+..++...|.++++|++|++++|.+..+|.. +.++++|++|++++|
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 46788888888888876554 6788888888888888876678888888888888888777665 477888888888888
Q ss_pred CCCCCCc--ccCCCCCccEEEcccCCCcccch-hhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcccccc
Q 005708 116 RRFGDLP--LIGELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHWQF 192 (681)
Q Consensus 116 ~~~~~l~--~l~~L~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 192 (681)
. ++.+| .+.++++|++|++++|.++.+|. .+..+++|++|++++| .+..+|...+.++++|++|++++|.+.
T Consensus 96 ~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~--- 170 (270)
T 2o6q_A 96 K-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLK--- 170 (270)
T ss_dssp C-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS---
T ss_pred c-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCcCc---
Confidence 8 66665 67888888888888888887764 4688888888888885 455677665788888888888887542
Q ss_pred cchhhhhhccchhhhcCCCCCcEEEEeCCCCCCCCCC--CCCCCccEEEEEecC
Q 005708 193 ESEEDARSNAKFIELGALSRLTSLHIDIPKGKIMPSD--MSFQNLTSFSIKIGD 244 (681)
Q Consensus 193 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~~~~ 244 (681)
...+..+..+++|++|++++|.+..++.. ..+++|+.|++.++.
T Consensus 171 --------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 171 --------RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp --------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred --------EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 12233477788888888888888777764 567778888776653
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.78 E-value=2.8e-18 Score=170.43 Aligned_cols=208 Identities=23% Similarity=0.241 Sum_probs=167.1
Q ss_pred CCcccCCCCCCCCCCccEEEccCCCCccCCCC-C-CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCC-c
Q 005708 23 GVELKDWPSINTFEDLTGISLMFNDIHEVPDE-L-ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLP-S 99 (681)
Q Consensus 23 ~~~~~~~~~~~~l~~lr~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp-~ 99 (681)
+..+..+|.- -.+++++|++++|.+..++.. + .+++|++|++++|.+..++...|..+++|++|++++|.+..++ .
T Consensus 16 ~~~l~~ip~~-l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (276)
T 2z62_A 16 ELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94 (276)
T ss_dssp TSCCSSCCSS-SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred CCCccccCCC-CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChh
Confidence 3445666641 235799999999999988753 3 8899999999999999888877899999999999999997665 6
Q ss_pred cccCCCCCcEEEccCCCCCCCCc--ccCCCCCccEEEcccCCCcc--cchhhcCCccCcEEeccCCCCCCccChhhhcCC
Q 005708 100 SLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSESDVSE--IPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSL 175 (681)
Q Consensus 100 ~i~~l~~L~~L~L~~~~~~~~l~--~l~~L~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l 175 (681)
.++++++|++|++++|. +..++ .++++++|++|++++|.++. +|..++++++|++|++++|. +..++...+..+
T Consensus 95 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l 172 (276)
T 2z62_A 95 AFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVL 172 (276)
T ss_dssp TTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHH
T ss_pred hhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhh
Confidence 78999999999999998 66665 69999999999999999986 78899999999999999965 455654446666
Q ss_pred CCCc----EEEcccCcccccccchhhhhhccchhhhcCCCCCcEEEEeCCCCCCCCCC--CCCCCccEEEEEecCC
Q 005708 176 RKLE----ELYMSHSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKGKIMPSD--MSFQNLTSFSIKIGDL 245 (681)
Q Consensus 176 ~~L~----~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~~~~~ 245 (681)
.+|+ .|++++|.+. ..+.......+|+.|++++|.+..++.. ..+++|+.|++.++..
T Consensus 173 ~~L~~l~l~L~ls~n~l~------------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 173 HQMPLLNLSLDLSLNPMN------------FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp HTCTTCCEEEECCSSCCC------------EECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred hhccccceeeecCCCccc------------ccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 6666 8999888642 2333444455899999999999888765 5688899998876543
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.78 E-value=2.7e-20 Score=188.86 Aligned_cols=263 Identities=14% Similarity=0.083 Sum_probs=181.9
Q ss_pred CccEEEccCCCCccCCCCC--CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEEEccC
Q 005708 37 DLTGISLMFNDIHEVPDEL--ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLRTLSLHD 114 (681)
Q Consensus 37 ~lr~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~ 114 (681)
+++..+++.+.+..++... .+++|++|++++|.+..+++..|..+++|++|++++|.+...+. ++.+++|++|++++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCS
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcC
Confidence 3445555566655333332 56789999999999998887778999999999999999866654 88999999999999
Q ss_pred CCCCCCCcccCCCCCccEEEcccCCCcccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcccccccc
Q 005708 115 CRRFGDLPLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHWQFES 194 (681)
Q Consensus 115 ~~~~~~l~~l~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 194 (681)
|. ++.++ ..++|++|++++|.++.++.. .+++|++|++++|. +..+++..++.+++|++|++++|.+.
T Consensus 90 n~-l~~l~---~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~----- 157 (317)
T 3o53_A 90 NY-VQELL---VGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEID----- 157 (317)
T ss_dssp SE-EEEEE---ECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCC-----
T ss_pred Cc-ccccc---CCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCC-----
Confidence 88 66555 348899999999999877643 47889999999965 44555444788999999999988642
Q ss_pred hhhhhhccchhhh-cCCCCCcEEEEeCCCCCCCCCCCCCCCccEEEEEecCCcCCCchhHHHHHhhhccccccceeeecc
Q 005708 195 EEDARSNAKFIEL-GALSRLTSLHIDIPKGKIMPSDMSFQNLTSFSIKIGDLEEDPLSDFIELFLEKFNKRCSRAMGLSQ 273 (681)
Q Consensus 195 ~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~ 273 (681)
...+..+ ..+++|++|++++|.+..++....+++|+.|++.++.....+.
T Consensus 158 ------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~----------------------- 208 (317)
T 3o53_A 158 ------TVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGP----------------------- 208 (317)
T ss_dssp ------EEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECG-----------------------
T ss_pred ------cccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchh-----------------------
Confidence 1233444 4688999999999988777766667888888887765543322
Q ss_pred ccchhhhHHHHHHHHhccceeecccccCcccccccccccccCCCcEEEEEecCCc-eEeeeccccccccccCccceeeec
Q 005708 274 DMRISALHSWIKNLLLRSEILALAEVNDLENMVSDLANDGFNELMFLVIVRCNEM-KCLVNSLERTRRVTLHKLEWLAIF 352 (681)
Q Consensus 274 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l-~~l~~~~~~~~~~~~~~L~~L~l~ 352 (681)
.+ ..+++|+.|++.++. +......+ ..+++|++|++.+++-. ..++. ....+++|+.|.+.
T Consensus 209 ---------~~-~~l~~L~~L~L~~N~-l~~l~~~~--~~l~~L~~L~l~~N~~~~~~~~~-----~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 209 ---------EF-QSAAGVTWISLRNNK-LVLIEKAL--RFSQNLEHFDLRGNGFHCGTLRD-----FFSKNQRVQTVAKQ 270 (317)
T ss_dssp ---------GG-GGGTTCSEEECTTSC-CCEECTTC--CCCTTCCEEECTTCCCBHHHHHH-----HHHTCHHHHHHHHH
T ss_pred ---------hh-cccCcccEEECcCCc-ccchhhHh--hcCCCCCEEEccCCCccCcCHHH-----HHhccccceEEECC
Confidence 11 124566777775553 22332222 23677888887777432 11111 34556777777777
Q ss_pred ccccccc
Q 005708 353 LNQNLVE 359 (681)
Q Consensus 353 ~~~~l~~ 359 (681)
++..++.
T Consensus 271 ~~~~l~~ 277 (317)
T 3o53_A 271 TVKKLTG 277 (317)
T ss_dssp HHHHHHS
T ss_pred CchhccC
Confidence 6665543
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=2.4e-17 Score=180.56 Aligned_cols=191 Identities=19% Similarity=0.157 Sum_probs=154.6
Q ss_pred ceEEEeCCcccCCCCCCCCCCccEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCC
Q 005708 17 KFMIKAGVELKDWPSINTFEDLTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFS 96 (681)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~ 96 (681)
..+...++.+..+|.... ++|+.|++++|.++.+|. .+++|++|++++|.+..+|. .+++|++|++++|.+..
T Consensus 43 ~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~ 115 (622)
T 3g06_A 43 AVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTH 115 (622)
T ss_dssp CEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCCCC
T ss_pred cEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcCCC
Confidence 344555567888886332 899999999999999887 67999999999999999886 68999999999999999
Q ss_pred CCccccCCCCCcEEEccCCCCCCCCcccCCCCCccEEEcccCCCcccchhhcCCccCcEEeccCCCCCCccChhhhcCCC
Q 005708 97 LPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLR 176 (681)
Q Consensus 97 lp~~i~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~ 176 (681)
+|. .+.+|++|++++|. ++.+|. .+++|++|++++|.++.+|. .+.+|+.|++++| .+..+| ..++
T Consensus 116 l~~---~l~~L~~L~L~~N~-l~~lp~--~l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N-~l~~l~----~~~~ 181 (622)
T 3g06_A 116 LPA---LPSGLCKLWIFGNQ-LTSLPV--LPPGLQELSVSDNQLASLPA---LPSELCKLWAYNN-QLTSLP----MLPS 181 (622)
T ss_dssp CCC---CCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCC----CCCT
T ss_pred CCC---CCCCcCEEECCCCC-CCcCCC--CCCCCCEEECcCCcCCCcCC---ccCCCCEEECCCC-CCCCCc----ccCC
Confidence 987 67899999999998 888884 24899999999999999886 3578999999995 456677 4578
Q ss_pred CCcEEEcccCcccccccchhhhhhccchhhhcCCCCCcEEEEeCCCCCCCCCCCCCCCccEEEEEecCC
Q 005708 177 KLEELYMSHSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKGKIMPSDMSFQNLTSFSIKIGDL 245 (681)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~ 245 (681)
+|+.|++++|.+. .++. .+++|+.|++++|.+..+|.. +++|+.|++.++..
T Consensus 182 ~L~~L~Ls~N~l~------------~l~~---~~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N~L 233 (622)
T 3g06_A 182 GLQELSVSDNQLA------------SLPT---LPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRL 233 (622)
T ss_dssp TCCEEECCSSCCS------------CCCC---CCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCC
T ss_pred CCcEEECCCCCCC------------CCCC---ccchhhEEECcCCcccccCCC--CCCCCEEEccCCcc
Confidence 9999999998642 1221 347899999999999887753 46777777665543
No 71
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.77 E-value=5.6e-18 Score=170.75 Aligned_cols=187 Identities=21% Similarity=0.266 Sum_probs=163.7
Q ss_pred EeCCcccCCCCCCCCCCccEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCcc
Q 005708 21 KAGVELKDWPSINTFEDLTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSS 100 (681)
Q Consensus 21 ~~~~~~~~~~~~~~l~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~ 100 (681)
..+..+..++.+..+++|+.|++++|.+..++....+++|++|++++|.+..++. |..+++|++|++++|.+..++.
T Consensus 48 l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~- 124 (308)
T 1h6u_A 48 AFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP- 124 (308)
T ss_dssp CTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGG--GTTCTTCCEEECTTSCCCCCGG-
T ss_pred eeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchh--hcCCCCCCEEECCCCCCCCchh-
Confidence 3345677888899999999999999999988875589999999999999998874 7999999999999999988875
Q ss_pred ccCCCCCcEEEccCCCCCCCCcccCCCCCccEEEcccCCCcccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcE
Q 005708 101 LSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEE 180 (681)
Q Consensus 101 i~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~ 180 (681)
++.+++|++|++++|. ++.++.++++++|++|++++|.++.++. +..+++|++|++++|. +..++. +..+++|++
T Consensus 125 l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~ 199 (308)
T 1h6u_A 125 LAGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK-ISDISP--LASLPNLIE 199 (308)
T ss_dssp GTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCE
T ss_pred hcCCCCCCEEECCCCc-cCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc-cCcChh--hcCCCCCCE
Confidence 8999999999999998 8888889999999999999999999887 9999999999999965 556665 799999999
Q ss_pred EEcccCcccccccchhhhhhccchhhhcCCCCCcEEEEeCCCCCCCCC
Q 005708 181 LYMSHSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKGKIMPS 228 (681)
Q Consensus 181 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 228 (681)
|++++|.+. ..+ .+..+++|+.|++++|.+...|.
T Consensus 200 L~L~~N~l~------------~~~-~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 200 VHLKNNQIS------------DVS-PLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp EECTTSCCC------------BCG-GGTTCTTCCEEEEEEEEEECCCE
T ss_pred EEccCCccC------------ccc-cccCCCCCCEEEccCCeeecCCe
Confidence 999999652 222 48999999999999998765543
No 72
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.77 E-value=1.7e-18 Score=167.95 Aligned_cols=200 Identities=15% Similarity=0.264 Sum_probs=169.1
Q ss_pred ccCCCCCCCCCCccEEEccCCCCccCCCC-C-CCCCCcEEEccCCC-CCCCChHHHhCCCCccEEEecC-CCCCCCC-cc
Q 005708 26 LKDWPSINTFEDLTGISLMFNDIHEVPDE-L-ECPKLQALFLQENS-PLAIPDRFFQGMKDLKVLDLGG-IRGFSLP-SS 100 (681)
Q Consensus 26 ~~~~~~~~~l~~lr~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~-~~~l~~~~~~~l~~Lr~L~L~~-~~~~~lp-~~ 100 (681)
+..+|. -..+++.|++++|.+..++.. + .+++|++|++++|. +..+++..|.++++|++|++++ |.+..+| ..
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 777787 446899999999999988874 3 89999999999997 8899887789999999999998 9998776 56
Q ss_pred ccCCCCCcEEEccCCCCCCCCcccCCCCCcc---EEEcccC-CCcccch-hhcCCccCc-EEeccCCCCCCccChhhhcC
Q 005708 101 LSFLINLRTLSLHDCRRFGDLPLIGELSLLE---ILDLSES-DVSEIPV-SFGRLGHLR-LLDLTDCVHLELIPRDVLSS 174 (681)
Q Consensus 101 i~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~---~L~l~~~-~i~~lp~-~i~~l~~L~-~L~L~~~~~~~~~~~~~l~~ 174 (681)
+.++++|++|++++|. ++.+|.++++++|+ +|++++| .++.+|. .+..+++|+ +|++++|. +..+|...+..
T Consensus 101 f~~l~~L~~L~l~~n~-l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~ 178 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNG 178 (239)
T ss_dssp EECCTTCCEEEEEEEC-CCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTT
T ss_pred hCCCCCCCEEeCCCCC-CccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCC
Confidence 8899999999999998 77788888888888 9999999 9998876 489999999 99999965 55888774555
Q ss_pred CCCCcEEEcccCc-ccccccchhhhhhccchhhhcCC-CCCcEEEEeCCCCCCCCCCCCCCCccEEEEEe
Q 005708 175 LRKLEELYMSHSF-CHWQFESEEDARSNAKFIELGAL-SRLTSLHIDIPKGKIMPSDMSFQNLTSFSIKI 242 (681)
Q Consensus 175 l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~ 242 (681)
++|++|++++|. +. ......+..+ ++|+.|++++|.+..+|.. .+++|+.|.+..
T Consensus 179 -~~L~~L~L~~n~~l~-----------~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l~~ 235 (239)
T 2xwt_C 179 -TKLDAVYLNKNKYLT-----------VIDKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIARN 235 (239)
T ss_dssp -CEEEEEECTTCTTCC-----------EECTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEECTT
T ss_pred -CCCCEEEcCCCCCcc-----------cCCHHHhhccccCCcEEECCCCccccCChh-HhccCceeeccC
Confidence 899999999984 31 1223457888 9999999999999888876 778888887654
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.77 E-value=1.2e-17 Score=165.11 Aligned_cols=189 Identities=23% Similarity=0.369 Sum_probs=159.6
Q ss_pred EeCCcccCCCCCCCCCCccEEEccCCCCccCCCC-C-CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCC
Q 005708 21 KAGVELKDWPSINTFEDLTGISLMFNDIHEVPDE-L-ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLP 98 (681)
Q Consensus 21 ~~~~~~~~~~~~~~l~~lr~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp 98 (681)
..+..+..+|.. -.+++++|++++|.+..++.. + .+++|++|++++|.+..++..+|..+++|++|++++|.+..+|
T Consensus 23 ~~~~~l~~ip~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~ 101 (270)
T 2o6q_A 23 CSSKKLTAIPSN-IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101 (270)
T ss_dssp CTTSCCSSCCSC-CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCC
T ss_pred ccCCCCCccCCC-CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCC
Confidence 334556777742 236899999999999988763 3 8999999999999999999998999999999999999998876
Q ss_pred c-cccCCCCCcEEEccCCCCCCCCc--ccCCCCCccEEEcccCCCcccchh-hcCCccCcEEeccCCCCCCccChhhhcC
Q 005708 99 S-SLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSESDVSEIPVS-FGRLGHLRLLDLTDCVHLELIPRDVLSS 174 (681)
Q Consensus 99 ~-~i~~l~~L~~L~L~~~~~~~~l~--~l~~L~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~~~~l~~ 174 (681)
. .+.++++|++|++++|. ++.++ .++++++|++|++++|.++.+|.. +..+++|++|++++|. +..++...+.+
T Consensus 102 ~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 179 (270)
T 2o6q_A 102 IGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDK 179 (270)
T ss_dssp TTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTT
T ss_pred HhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHhcc
Confidence 5 56899999999999999 66665 689999999999999999998875 7899999999999964 56677666889
Q ss_pred CCCCcEEEcccCcccccccchhhhhhccchhhhcCCCCCcEEEEeCCCC
Q 005708 175 LRKLEELYMSHSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKG 223 (681)
Q Consensus 175 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 223 (681)
+++|++|++++|.+. ......+..+++|+.|++++|..
T Consensus 180 l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 180 LTELKTLKLDNNQLK-----------RVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CTTCCEEECCSSCCS-----------CCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCcCEEECCCCcCC-----------cCCHHHhccccCCCEEEecCCCe
Confidence 999999999998642 12234578899999999999865
No 74
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.76 E-value=3.3e-20 Score=199.27 Aligned_cols=384 Identities=17% Similarity=0.091 Sum_probs=222.3
Q ss_pred CCccEEEccCCCCccCCCC--C-CCCCCcEEEccCCCCCC-----CChHHHhCCCCccEEEecCCCCCC-CCccc-cCCC
Q 005708 36 EDLTGISLMFNDIHEVPDE--L-ECPKLQALFLQENSPLA-----IPDRFFQGMKDLKVLDLGGIRGFS-LPSSL-SFLI 105 (681)
Q Consensus 36 ~~lr~L~l~~~~~~~l~~~--~-~~~~Lr~L~l~~~~~~~-----l~~~~~~~l~~Lr~L~L~~~~~~~-lp~~i-~~l~ 105 (681)
+++++|+++++.+...+.. . .+++|++|++++|.+.. ++. .+..+++|++|++++|.+.. .+..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS-ALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHH-HHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHH-HHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 5677888888877643211 2 66788888888888762 233 35777888888888887733 22222 2344
Q ss_pred ----CCcEEEccCCCCCCC-----Cc-ccCCCCCccEEEcccCCCccc-chhh-----cCCccCcEEeccCCCCCCc---
Q 005708 106 ----NLRTLSLHDCRRFGD-----LP-LIGELSLLEILDLSESDVSEI-PVSF-----GRLGHLRLLDLTDCVHLEL--- 166 (681)
Q Consensus 106 ----~L~~L~L~~~~~~~~-----l~-~l~~L~~L~~L~l~~~~i~~l-p~~i-----~~l~~L~~L~L~~~~~~~~--- 166 (681)
+|++|++++|. ++. ++ .+.++++|++|++++|.+... +..+ ...++|++|++++|.....
T Consensus 82 ~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp STTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 68888888887 542 34 677888888888888877632 2222 2255788888888654332
Q ss_pred -cChhhhcCCCCCcEEEcccCcccccccchhhhhhccchhhhc-CCCCCcEEEEeCCCCCCC-----CCC-CCCCCccEE
Q 005708 167 -IPRDVLSSLRKLEELYMSHSFCHWQFESEEDARSNAKFIELG-ALSRLTSLHIDIPKGKIM-----PSD-MSFQNLTSF 238 (681)
Q Consensus 167 -~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~-----~~~-~~l~~L~~L 238 (681)
++.. +.++++|++|++++|.+... ........+. ..++|++|++++|.+... +.. ..+++|+.|
T Consensus 161 ~l~~~-l~~~~~L~~L~L~~n~i~~~-------~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 232 (461)
T 1z7x_W 161 PLASV-LRAKPDFKELTVSNNDINEA-------GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL 232 (461)
T ss_dssp HHHHH-HHHCTTCCEEECCSSBCHHH-------HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEE
T ss_pred HHHHH-HhhCCCCCEEECcCCCcchH-------HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEE
Confidence 2322 56678888888887753110 0111222222 356888888888876542 222 356778888
Q ss_pred EEEecCCcCCCchhHHHHHhhhc--cccccceeeeccccchhh-----hHHHHHHHHhccceeecccccCcccccccccc
Q 005708 239 SIKIGDLEEDPLSDFIELFLEKF--NKRCSRAMGLSQDMRISA-----LHSWIKNLLLRSEILALAEVNDLENMVSDLAN 311 (681)
Q Consensus 239 ~l~~~~~~~~~~~~~~~~~~~~~--~~~~l~~l~l~~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 311 (681)
++.++...+.. ...+.... ..++++.+.+.++. +.. ++..+.. +++|+.|++.++.........+..
T Consensus 233 ~Ls~n~l~~~~----~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~ 306 (461)
T 1z7x_W 233 ALGSNKLGDVG----MAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRA-KESLKELSLAGNELGDEGARLLCE 306 (461)
T ss_dssp ECCSSBCHHHH----HHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHH-CTTCCEEECTTCCCHHHHHHHHHH
T ss_pred eccCCcCChHH----HHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhh-CCCcceEECCCCCCchHHHHHHHH
Confidence 87776542211 11111111 36788888888762 222 4544433 688999999777532221111111
Q ss_pred ---cccCCCcEEEEEecCCceEeeeccccccccccCccceeeecccccccccccCcCC---CCcCCCccEEEEeeCCCCC
Q 005708 312 ---DGFNELMFLVIVRCNEMKCLVNSLERTRRVTLHKLEWLAIFLNQNLVEICHGQLP---AGCLSNVKRLDVGDCGSML 385 (681)
Q Consensus 312 ---~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~---~~~~~~L~~L~l~~c~~l~ 385 (681)
...++|++|++++|. +..............+++|++|+++++ .+.......+. ....++|+.|++++| .++
T Consensus 307 ~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~ 383 (461)
T 1z7x_W 307 TLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVS 383 (461)
T ss_dssp HHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCC
T ss_pred HhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCC
Confidence 123699999999983 332110000003345689999999998 34332111110 012579999999997 455
Q ss_pred ccc---cchHHhhcCCCcEEEEeeccCcceeecccccccccccccccCccCEEeeccCCC
Q 005708 386 KIL---PSHLVQSFQNLQRLRVGRCELLESVFEIERVNIAKEETELFSSLEKLTLIDLPR 442 (681)
Q Consensus 386 ~~~---~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 442 (681)
... ....+..+++|++|++++|.- .......-. .......++|+.|.+.++..
T Consensus 384 ~~~~~~l~~~l~~~~~L~~L~l~~N~i-~~~~~~~l~---~~l~~~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 384 DSSCSSLAATLLANHSLRELDLSNNCL-GDAGILQLV---ESVRQPGCLLEQLVLYDIYW 439 (461)
T ss_dssp HHHHHHHHHHHHHCCCCCEEECCSSSC-CHHHHHHHH---HHHTSTTCCCCEEECTTCCC
T ss_pred hhhHHHHHHHHHhCCCccEEECCCCCC-CHHHHHHHH---HHhccCCcchhheeeccccc
Confidence 310 113356789999999999853 221110000 00112345799999888654
No 75
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=5.5e-19 Score=179.21 Aligned_cols=242 Identities=17% Similarity=0.124 Sum_probs=173.6
Q ss_pred CCCCCccEEEccCCCCccCCCC-C-CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEE
Q 005708 33 NTFEDLTGISLMFNDIHEVPDE-L-ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLRTL 110 (681)
Q Consensus 33 ~~l~~lr~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L 110 (681)
..+++|++|++++|.+..++.. + .+++|++|++++|.+..+++ |..+++|++|++++|++..++ ..++|++|
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L 104 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----VGPSIETL 104 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE----ECTTCCEE
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc----CCCCcCEE
Confidence 3456889999999998877642 2 88999999999999887665 788999999999999887655 33788999
Q ss_pred EccCCCCCCCCcccCCCCCccEEEcccCCCcccch-hhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCccc
Q 005708 111 SLHDCRRFGDLPLIGELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCH 189 (681)
Q Consensus 111 ~L~~~~~~~~l~~l~~L~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 189 (681)
++++|. +..++. ..+++|++|++++|.++.++. .++.+++|++|++++|......+......+++|++|++++|.+.
T Consensus 105 ~l~~n~-l~~~~~-~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 105 HAANNN-ISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp ECCSSC-CSEEEE-CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred ECCCCc-cCCcCc-cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 999888 655552 236788999999998887744 67888899999998865443334442357888999999888642
Q ss_pred ccccchhhhhhccchhhhcCCCCCcEEEEeCCCCCCCCCC-CCCCCccEEEEEecCCcCCCchhHHHHHhhhccccccce
Q 005708 190 WQFESEEDARSNAKFIELGALSRLTSLHIDIPKGKIMPSD-MSFQNLTSFSIKIGDLEEDPLSDFIELFLEKFNKRCSRA 268 (681)
Q Consensus 190 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 268 (681)
.......+++|++|++++|.+..++.. ..+++|+.|++.++.....+. .....++++.
T Consensus 183 -------------~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~--------~~~~l~~L~~ 241 (317)
T 3o53_A 183 -------------DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK--------ALRFSQNLEH 241 (317)
T ss_dssp -------------EEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECT--------TCCCCTTCCE
T ss_pred -------------ccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhh--------HhhcCCCCCE
Confidence 112344588888999988888777665 667888888888776654432 0124567888
Q ss_pred eeeccccch-hhhHHHHHHHHhccceeecccccCccc
Q 005708 269 MGLSQDMRI-SALHSWIKNLLLRSEILALAEVNDLEN 304 (681)
Q Consensus 269 l~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~ 304 (681)
+.+.++.-. ..++.++.. ++.|+.+++.++..+..
T Consensus 242 L~l~~N~~~~~~~~~~~~~-~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 242 FDLRGNGFHCGTLRDFFSK-NQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp EECTTCCCBHHHHHHHHHT-CHHHHHHHHHHHHHHHS
T ss_pred EEccCCCccCcCHHHHHhc-cccceEEECCCchhccC
Confidence 888877554 345555443 57777777765554433
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.75 E-value=9.9e-18 Score=166.48 Aligned_cols=199 Identities=21% Similarity=0.252 Sum_probs=157.8
Q ss_pred EEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCc-cccCCCCCcEEEccCCCCC
Q 005708 40 GISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPS-SLSFLINLRTLSLHDCRRF 118 (681)
Q Consensus 40 ~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~ 118 (681)
.++..+..+..+|.... ++|++|++++|.+..++...|.++++|++|++++|++..++. .++++++|++|++++|. +
T Consensus 11 ~~~c~~~~l~~ip~~l~-~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-I 88 (276)
T ss_dssp EEECTTSCCSSCCSSSC-TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-C
T ss_pred eEEecCCCccccCCCCC-CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-c
Confidence 56667777778887653 689999999999998887678999999999999999977654 78999999999999999 6
Q ss_pred CCCc--ccCCCCCccEEEcccCCCcccch-hhcCCccCcEEeccCCCCCC-ccChhhhcCCCCCcEEEcccCcccccccc
Q 005708 119 GDLP--LIGELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCVHLE-LIPRDVLSSLRKLEELYMSHSFCHWQFES 194 (681)
Q Consensus 119 ~~l~--~l~~L~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 194 (681)
+.++ .++++++|++|++++|.+..++. .++++++|++|++++|.... .+|.. ++++++|++|++++|.+....
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~-- 165 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY-- 165 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEEC--
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh-hccCCCCCEEECCCCCCCcCC--
Confidence 6554 79999999999999999998866 69999999999999966443 25665 899999999999998653111
Q ss_pred hhhhhhccchhhhcCCCCCc-EEEEeCCCCCCCCCC-CCCCCccEEEEEecCCcCCC
Q 005708 195 EEDARSNAKFIELGALSRLT-SLHIDIPKGKIMPSD-MSFQNLTSFSIKIGDLEEDP 249 (681)
Q Consensus 195 ~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~ 249 (681)
......+..++.|. .|++++|.+..++.. ....+|+.|++.++.....+
T Consensus 166 ------~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~ 216 (276)
T 2z62_A 166 ------CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVP 216 (276)
T ss_dssp ------GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCC
T ss_pred ------HHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecC
Confidence 12334455555555 899999999877665 44457888888877654443
No 77
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=1e-17 Score=167.28 Aligned_cols=178 Identities=28% Similarity=0.312 Sum_probs=137.6
Q ss_pred cCCCCCCCCCCccEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccCCCC
Q 005708 27 KDWPSINTFEDLTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLIN 106 (681)
Q Consensus 27 ~~~~~~~~l~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~ 106 (681)
..+.....+++++.|++++|.+..++....+++|++|++++|.+..++. +..+++|++|++++|.+..+|. ++.+++
T Consensus 37 ~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~ 113 (291)
T 1h6t_A 37 TDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKK 113 (291)
T ss_dssp TSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTT
T ss_pred ccccchhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCC
Confidence 3444456677888888888888877665578888888888888888776 6888888888888888877654 788888
Q ss_pred CcEEEccCCCCCCCCcccCCCCCccEEEcccCCCcccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccC
Q 005708 107 LRTLSLHDCRRFGDLPLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHS 186 (681)
Q Consensus 107 L~~L~L~~~~~~~~l~~l~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 186 (681)
|++|++++|. ++.++.++.+++|++|++++|.++.+ ..++.+++|++|++++|. +..+++ +..+++|++|++++|
T Consensus 114 L~~L~L~~n~-i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 114 LKSLSLEHNG-ISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKN 188 (291)
T ss_dssp CCEEECTTSC-CCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSS
T ss_pred CCEEECCCCc-CCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEECCCC
Confidence 8888888887 77778888888888888888888877 468888888888888854 445554 788888888888887
Q ss_pred cccccccchhhhhhccchhhhcCCCCCcEEEEeCCCCCC
Q 005708 187 FCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKGKI 225 (681)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 225 (681)
.+. ....+..+++|+.|++++|.+..
T Consensus 189 ~i~-------------~l~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 189 HIS-------------DLRALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCC-------------BCGGGTTCTTCSEEEEEEEEEEC
T ss_pred cCC-------------CChhhccCCCCCEEECcCCcccC
Confidence 541 22357788888888888876644
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.74 E-value=1.2e-17 Score=165.20 Aligned_cols=182 Identities=24% Similarity=0.318 Sum_probs=149.0
Q ss_pred CCCCCCCCCCccEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCc-cccCCCC
Q 005708 28 DWPSINTFEDLTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPS-SLSFLIN 106 (681)
Q Consensus 28 ~~~~~~~l~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~ 106 (681)
.......+++++.|+++++.+..++....+++|++|++++|.+..++. +..+++|++|++++|.+..++. .++++++
T Consensus 33 ~~~~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 110 (272)
T 3rfs_A 33 DAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISA--LKELTNLTYLILTGNQLQSLPNGVFDKLTN 110 (272)
T ss_dssp SEECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred cccccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchh--hcCCCCCCEEECCCCccCccChhHhcCCcC
Confidence 334566778899999999998888766688999999999999888753 7899999999999999977765 4689999
Q ss_pred CcEEEccCCCCCCCCc--ccCCCCCccEEEcccCCCcccchh-hcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEc
Q 005708 107 LRTLSLHDCRRFGDLP--LIGELSLLEILDLSESDVSEIPVS-FGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYM 183 (681)
Q Consensus 107 L~~L~L~~~~~~~~l~--~l~~L~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l 183 (681)
|++|++++|. ++.++ .++++++|++|++++|.++.+|.. ++.+++|++|++++|. +..++...++++++|++|++
T Consensus 111 L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L 188 (272)
T 3rfs_A 111 LKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRL 188 (272)
T ss_dssp CCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEEC
Confidence 9999999998 66665 588999999999999999988764 6889999999999965 55677665788999999999
Q ss_pred ccCcccccccchhhhhhccchhhhcCCCCCcEEEEeCCCCC
Q 005708 184 SHSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKGK 224 (681)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 224 (681)
++|.+. ...+..++.+++|+.|++++|.+.
T Consensus 189 ~~N~l~-----------~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 189 YQNQLK-----------SVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp CSSCCS-----------CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCcCC-----------ccCHHHHhCCcCCCEEEccCCCcc
Confidence 988642 123345788999999999998764
No 79
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.74 E-value=5.4e-17 Score=158.52 Aligned_cols=174 Identities=22% Similarity=0.323 Sum_probs=142.5
Q ss_pred CccEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCC-ccccCCCCCcEEEccCC
Q 005708 37 DLTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLP-SSLSFLINLRTLSLHDC 115 (681)
Q Consensus 37 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~ 115 (681)
..++++++++.+..+|.... ++++.|++++|.+..++...|.++++|++|++++|.+..++ ..+.++++|++|++++|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 46788999999998887665 68999999999999888777899999999999999996654 45789999999999999
Q ss_pred CCCCCCc--ccCCCCCccEEEcccCCCcccchh-hcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcccccc
Q 005708 116 RRFGDLP--LIGELSLLEILDLSESDVSEIPVS-FGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHWQF 192 (681)
Q Consensus 116 ~~~~~l~--~l~~L~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 192 (681)
. ++.+| .++++++|++|++++|.++.+|.. +..+++|++|++++| .+..++...++++++|++|++++|.+.
T Consensus 94 ~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~--- 168 (251)
T 3m19_A 94 Q-LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQ--- 168 (251)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS---
T ss_pred c-ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCC---
Confidence 8 66665 678999999999999999988765 688999999999995 456777655888999999999888642
Q ss_pred cchhhhhhccchhhhcCCCCCcEEEEeCCCCC
Q 005708 193 ESEEDARSNAKFIELGALSRLTSLHIDIPKGK 224 (681)
Q Consensus 193 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 224 (681)
...+..+..+++|+.|++++|.+.
T Consensus 169 --------~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 169 --------SVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp --------CCCTTTTTTCTTCCEEECCSCCBC
T ss_pred --------ccCHHHHhCCCCCCEEEeeCCcee
Confidence 123346778888888888888653
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.73 E-value=3.6e-17 Score=161.82 Aligned_cols=193 Identities=21% Similarity=0.297 Sum_probs=150.2
Q ss_pred CccEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEEEccCCC
Q 005708 37 DLTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLRTLSLHDCR 116 (681)
Q Consensus 37 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~ 116 (681)
++..+++..+.+..+.....+++|+.|+++++.+..++. +..+++|++|++++|.+..++ .++.+++|++|++++|.
T Consensus 20 ~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~ 96 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQ 96 (272)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSC
T ss_pred HHHHHHhcCcccccccccccccceeeeeeCCCCcccccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCc
Confidence 344455555555554444477899999999998888775 688999999999999887764 68889999999999988
Q ss_pred CCCCCc--ccCCCCCccEEEcccCCCcccchh-hcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCccccccc
Q 005708 117 RFGDLP--LIGELSLLEILDLSESDVSEIPVS-FGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHWQFE 193 (681)
Q Consensus 117 ~~~~l~--~l~~L~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 193 (681)
++.++ .++++++|++|++++|.++.+|.. ++.+++|++|++++|. +..++...++++++|++|++++|.+.
T Consensus 97 -l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~---- 170 (272)
T 3rfs_A 97 -LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQ---- 170 (272)
T ss_dssp -CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC----
T ss_pred -cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcC----
Confidence 66665 478899999999999999887664 7889999999999964 55677665788999999999888642
Q ss_pred chhhhhhccchhhhcCCCCCcEEEEeCCCCCCCCCC--CCCCCccEEEEEecCC
Q 005708 194 SEEDARSNAKFIELGALSRLTSLHIDIPKGKIMPSD--MSFQNLTSFSIKIGDL 245 (681)
Q Consensus 194 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~~~~~ 245 (681)
...+..++.+++|++|++++|.+..++.. ..+++|+.|++.++..
T Consensus 171 -------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 171 -------SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp -------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred -------ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 12334468889999999999988777664 6788899998887654
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.73 E-value=4.5e-17 Score=162.40 Aligned_cols=185 Identities=21% Similarity=0.155 Sum_probs=159.1
Q ss_pred eCCcccCCCCCCCCCCccEEEccCCCCccCCCC-C-CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCc
Q 005708 22 AGVELKDWPSINTFEDLTGISLMFNDIHEVPDE-L-ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPS 99 (681)
Q Consensus 22 ~~~~~~~~~~~~~l~~lr~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~ 99 (681)
.+..+..+|.- -.++++.|++++|.+..++.. + .+++|++|++++|.+..++.. +.+++|++|++++|++..+|.
T Consensus 18 ~~~~l~~ip~~-~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~~l~~ 94 (290)
T 1p9a_G 18 DKRNLTALPPD-LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQSLPL 94 (290)
T ss_dssp TTSCCSSCCSC-CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCSSCCC
T ss_pred CCCCCCcCCCC-CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCCcCch
Confidence 34556677642 237899999999999877543 3 899999999999999988763 799999999999999999999
Q ss_pred cccCCCCCcEEEccCCCCCCCCc--ccCCCCCccEEEcccCCCcccchh-hcCCccCcEEeccCCCCCCccChhhhcCCC
Q 005708 100 SLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSESDVSEIPVS-FGRLGHLRLLDLTDCVHLELIPRDVLSSLR 176 (681)
Q Consensus 100 ~i~~l~~L~~L~L~~~~~~~~l~--~l~~L~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~ 176 (681)
.+..+++|++|++++|. ++.+| .++++++|++|++++|.++.+|.. +..+++|++|++++| .+..+|...+.+++
T Consensus 95 ~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~ 172 (290)
T 1p9a_G 95 LGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLE 172 (290)
T ss_dssp CTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCT
T ss_pred hhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC-cCCccCHHHhcCcC
Confidence 99999999999999999 77775 699999999999999999988765 689999999999995 56688887778999
Q ss_pred CCcEEEcccCcccccccchhhhhhccchhhhcCCCCCcEEEEeCCCC
Q 005708 177 KLEELYMSHSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKG 223 (681)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 223 (681)
+|++|++++|.+ ..++..+....+|+.|++.+|..
T Consensus 173 ~L~~L~L~~N~l------------~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 173 NLDTLLLQENSL------------YTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TCCEEECCSSCC------------CCCCTTTTTTCCCSEEECCSCCB
T ss_pred CCCEEECCCCcC------------CccChhhcccccCCeEEeCCCCc
Confidence 999999999964 25667788888999999999865
No 82
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=1.2e-17 Score=179.29 Aligned_cols=169 Identities=18% Similarity=0.178 Sum_probs=120.2
Q ss_pred CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEEEccCCCCCCCCcccCCCCCccEEEc
Q 005708 56 ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDL 135 (681)
Q Consensus 56 ~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~l 135 (681)
.+++|++|++++|.+..+++..|+.+++|++|+|++|.+...++ ++.+++|++|++++|. ++.+|. .++|++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~---~~~L~~L~L 106 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV---GPSIETLHA 106 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE---CTTCCEEEC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC---CCCcCEEEC
Confidence 44588888888888888876667888888888888888865554 7888888888888887 665552 378888888
Q ss_pred ccCCCcccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcccccccchhhhhhccchhhhc-CCCCCc
Q 005708 136 SESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHWQFESEEDARSNAKFIELG-ALSRLT 214 (681)
Q Consensus 136 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~L~ 214 (681)
++|.++.+|.. .+++|++|++++|...+..|.. ++++++|+.|++++|.+. ...+..+. .+++|+
T Consensus 107 ~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~-----------~~~~~~l~~~l~~L~ 172 (487)
T 3oja_A 107 ANNNISRVSCS--RGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEID-----------TVNFAELAASSDTLE 172 (487)
T ss_dssp CSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBC-GGGGSSEEEEECTTSCCC-----------EEEGGGGGGGTTTCC
T ss_pred cCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchh-hcCCCCCCEEECCCCCCC-----------CcChHHHhhhCCccc
Confidence 88888877643 4678888888886544333433 778888888888887642 13444554 678888
Q ss_pred EEEEeCCCCCCCCCCCCCCCccEEEEEec
Q 005708 215 SLHIDIPKGKIMPSDMSFQNLTSFSIKIG 243 (681)
Q Consensus 215 ~L~l~~~~~~~~~~~~~l~~L~~L~l~~~ 243 (681)
.|++++|.+..++....+++|+.|++.++
T Consensus 173 ~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N 201 (487)
T 3oja_A 173 HLNLQYNFIYDVKGQVVFAKLKTLDLSSN 201 (487)
T ss_dssp EEECTTSCCCEEECCCCCTTCCEEECCSS
T ss_pred EEecCCCccccccccccCCCCCEEECCCC
Confidence 88888887765544444444555444443
No 83
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.72 E-value=7.5e-18 Score=180.89 Aligned_cols=232 Identities=16% Similarity=0.135 Sum_probs=173.1
Q ss_pred CCCCccEEEccCCCCccCCC-CC-CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEEE
Q 005708 34 TFEDLTGISLMFNDIHEVPD-EL-ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLRTLS 111 (681)
Q Consensus 34 ~l~~lr~L~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~ 111 (681)
.+++|+.|++++|.+..++. .+ .+++|++|++++|.+..+++ |..+++|++|++++|.+..+|. .++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEE
Confidence 44589999999999988764 33 88999999999999987665 7899999999999998876653 37899999
Q ss_pred ccCCCCCCCCcccCCCCCccEEEcccCCCccc-chhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcccc
Q 005708 112 LHDCRRFGDLPLIGELSLLEILDLSESDVSEI-PVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHW 190 (681)
Q Consensus 112 L~~~~~~~~l~~l~~L~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 190 (681)
+++|. +..++. ..+++|++|++++|.++.+ |..++.+++|++|++++|...+..|..+...+++|+.|++++|.+.
T Consensus 106 L~~N~-l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~- 182 (487)
T 3oja_A 106 AANNN-ISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY- 182 (487)
T ss_dssp CCSSC-CCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-
T ss_pred CcCCc-CCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc-
Confidence 99998 666653 3468899999999999876 5578899999999999976555555553347999999999998652
Q ss_pred cccchhhhhhccchhhhcCCCCCcEEEEeCCCCCCCCCC-CCCCCccEEEEEecCCcCCCchhHHHHHhhhc-cccccce
Q 005708 191 QFESEEDARSNAKFIELGALSRLTSLHIDIPKGKIMPSD-MSFQNLTSFSIKIGDLEEDPLSDFIELFLEKF-NKRCSRA 268 (681)
Q Consensus 191 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 268 (681)
.......+++|+.|++++|.+..+|+. ..+++|+.|++.++.....+. .+ ..++++.
T Consensus 183 ------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~---------~l~~l~~L~~ 241 (487)
T 3oja_A 183 ------------DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK---------ALRFSQNLEH 241 (487)
T ss_dssp ------------EEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECT---------TCCCCTTCCE
T ss_pred ------------cccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccch---------hhccCCCCCE
Confidence 113344688999999999998877765 677889999988876654432 22 4466777
Q ss_pred eeeccccch-hhhHHHHHHHHhccceeec
Q 005708 269 MGLSQDMRI-SALHSWIKNLLLRSEILAL 296 (681)
Q Consensus 269 l~l~~~~~~-~~~~~~~~~~~~~L~~L~l 296 (681)
+++.++.-. ..+|.++.. ++.++.+.+
T Consensus 242 L~l~~N~l~c~~~~~~~~~-l~~L~~l~~ 269 (487)
T 3oja_A 242 FDLRGNGFHCGTLRDFFSK-NQRVQTVAK 269 (487)
T ss_dssp EECTTCCBCHHHHHHHHTT-CHHHHHHHH
T ss_pred EEcCCCCCcCcchHHHHHh-CCCCcEEec
Confidence 777766544 234444322 344444444
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=3.8e-17 Score=158.43 Aligned_cols=188 Identities=15% Similarity=0.142 Sum_probs=158.1
Q ss_pred EEEeCCcccCCCC--CCCCCCccEEEccCCC-CccCCCCC--CCCCCcEEEccC-CCCCCCChHHHhCCCCccEEEecCC
Q 005708 19 MIKAGVELKDWPS--INTFEDLTGISLMFND-IHEVPDEL--ECPKLQALFLQE-NSPLAIPDRFFQGMKDLKVLDLGGI 92 (681)
Q Consensus 19 ~~~~~~~~~~~~~--~~~l~~lr~L~l~~~~-~~~l~~~~--~~~~Lr~L~l~~-~~~~~l~~~~~~~l~~Lr~L~L~~~ 92 (681)
+...++.+..++. +..+++|+.|++++|. +..++... .+++|++|++++ |.+..++...|..+++|++|++++|
T Consensus 36 L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n 115 (239)
T 2xwt_C 36 LKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT 115 (239)
T ss_dssp EEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEE
T ss_pred EEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCC
Confidence 3444556666664 7889999999999997 88888644 899999999998 9999998888899999999999999
Q ss_pred CCCCCCccccCCCCCc---EEEccCCCCCCCCc--ccCCCCCcc-EEEcccCCCcccchhhcCCccCcEEeccCCCCCCc
Q 005708 93 RGFSLPSSLSFLINLR---TLSLHDCRRFGDLP--LIGELSLLE-ILDLSESDVSEIPVSFGRLGHLRLLDLTDCVHLEL 166 (681)
Q Consensus 93 ~~~~lp~~i~~l~~L~---~L~L~~~~~~~~l~--~l~~L~~L~-~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~ 166 (681)
.+..+|. ++.+.+|+ +|++++|..++.+| .+.++++|+ +|++++|.++.+|......++|++|++++|..+..
T Consensus 116 ~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~ 194 (239)
T 2xwt_C 116 GLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTV 194 (239)
T ss_dssp CCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCE
T ss_pred CCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCccc
Confidence 9988997 88888888 99999993388777 599999999 99999999999988766668999999999755778
Q ss_pred cChhhhcCC-CCCcEEEcccCcccccccchhhhhhccchhhhcCCCCCcEEEEeCC
Q 005708 167 IPRDVLSSL-RKLEELYMSHSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIP 221 (681)
Q Consensus 167 ~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 221 (681)
++...+.++ ++|+.|++++|.+. ..+.. .+++|+.|++.++
T Consensus 195 i~~~~~~~l~~~L~~L~l~~N~l~------------~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 195 IDKDAFGGVYSGPSLLDVSQTSVT------------ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp ECTTTTTTCSBCCSEEECTTCCCC------------CCCCT--TCTTCSEEECTTC
T ss_pred CCHHHhhccccCCcEEECCCCccc------------cCChh--HhccCceeeccCc
Confidence 887768899 99999999998642 22322 6788999988765
No 85
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.71 E-value=2.7e-17 Score=166.35 Aligned_cols=180 Identities=19% Similarity=0.210 Sum_probs=88.7
Q ss_pred CCCCcEEEccCCCCC-CCChHHH-hCCCCccEEEecCCCCCCCCccccCC-----CCCcEEEccCCCCCCCCc--ccCCC
Q 005708 57 CPKLQALFLQENSPL-AIPDRFF-QGMKDLKVLDLGGIRGFSLPSSLSFL-----INLRTLSLHDCRRFGDLP--LIGEL 127 (681)
Q Consensus 57 ~~~Lr~L~l~~~~~~-~l~~~~~-~~l~~Lr~L~L~~~~~~~lp~~i~~l-----~~L~~L~L~~~~~~~~l~--~l~~L 127 (681)
+++|++|++++|.+. .+|..+| ..+++|++|++++|++..+|..++.+ ++|++|++++|. +..++ .++++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccC
Confidence 555555555555555 3444322 55555555555555554445555444 555555555555 33332 45555
Q ss_pred CCccEEEcccCCCcc---cchhh--cCCccCcEEeccCCCCCC--ccChhhhcCCCCCcEEEcccCcccccccchhhhhh
Q 005708 128 SLLEILDLSESDVSE---IPVSF--GRLGHLRLLDLTDCVHLE--LIPRDVLSSLRKLEELYMSHSFCHWQFESEEDARS 200 (681)
Q Consensus 128 ~~L~~L~l~~~~i~~---lp~~i--~~l~~L~~L~L~~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 200 (681)
++|++|++++|.+.. +|..+ +.+++|++|++++|.... .++...+.++++|++|++++|.+...
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~--------- 243 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA--------- 243 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSS---------
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcc---------
Confidence 555555555555432 23333 555555555555543221 22223334555555555555543110
Q ss_pred ccchhhhcCCCCCcEEEEeCCCCCCCCCCCCCCCccEEEEEecCCcCC
Q 005708 201 NAKFIELGALSRLTSLHIDIPKGKIMPSDMSFQNLTSFSIKIGDLEED 248 (681)
Q Consensus 201 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 248 (681)
.....+..+++|+.|++++|.+..+|.... ++|+.|++.++.....
T Consensus 244 -~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~~L~~L~Ls~N~l~~~ 289 (312)
T 1wwl_A 244 -AGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-AKLSVLDLSYNRLDRN 289 (312)
T ss_dssp -CCCSCCCCCTTCCEEECTTSCCSSCCSSCC-SEEEEEECCSSCCCSC
T ss_pred -cchhhhhhcCCCCEEECCCCccChhhhhcc-CCceEEECCCCCCCCC
Confidence 001223344555555555555555554432 5555555555544443
No 86
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.71 E-value=9.4e-18 Score=169.66 Aligned_cols=241 Identities=17% Similarity=0.165 Sum_probs=155.9
Q ss_pred CCCccEEEccCCCCccCCCCCCCCCCcEEEccCCCCC--CCChHHH------hCCCCccEEEecCCCCC-CCCccc--cC
Q 005708 35 FEDLTGISLMFNDIHEVPDELECPKLQALFLQENSPL--AIPDRFF------QGMKDLKVLDLGGIRGF-SLPSSL--SF 103 (681)
Q Consensus 35 l~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~--~l~~~~~------~~l~~Lr~L~L~~~~~~-~lp~~i--~~ 103 (681)
.++++.+++++|.+ .+|.... ..|+.|++++|.+. .++..++ .++++|++|++++|.+. .+|..+ +.
T Consensus 42 ~~~L~~l~l~~n~l-~~p~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE-ADLGQFT-DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp EEECTTHHHHCCTT-CCCHHHH-HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CCCceeEeeccccc-ccHHHHH-HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 34566777777777 5554331 12777788777774 3555431 16788888888888884 677765 77
Q ss_pred CCCCcEEEccCCCCCCCCc-ccCCC-----CCccEEEcccCCCcccc-hhhcCCccCcEEeccCCCCCCc--cChhh-hc
Q 005708 104 LINLRTLSLHDCRRFGDLP-LIGEL-----SLLEILDLSESDVSEIP-VSFGRLGHLRLLDLTDCVHLEL--IPRDV-LS 173 (681)
Q Consensus 104 l~~L~~L~L~~~~~~~~l~-~l~~L-----~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~--~~~~~-l~ 173 (681)
+++|++|++++|. ++.+| .++.+ ++|++|++++|.+..+| ..++++++|++|++++|...+. ++... ++
T Consensus 120 l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 120 GPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp SCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred CCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 8888888888887 55555 55555 78888888888887765 6778888888888888665443 22221 26
Q ss_pred CCCCCcEEEcccCcccccccchhhhhhccch-hhhcCCCCCcEEEEeCCCCCCCCC---CCCCCCccEEEEEecCCcCCC
Q 005708 174 SLRKLEELYMSHSFCHWQFESEEDARSNAKF-IELGALSRLTSLHIDIPKGKIMPS---DMSFQNLTSFSIKIGDLEEDP 249 (681)
Q Consensus 174 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~ 249 (681)
++++|++|++++|.+. + ....+ ..+..+++|+.|++++|.+...+. ...+++|+.|++.++.....+
T Consensus 199 ~l~~L~~L~L~~N~l~----~-----~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip 269 (312)
T 1wwl_A 199 KFPTLQVLALRNAGME----T-----PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVP 269 (312)
T ss_dssp SCTTCCEEECTTSCCC----C-----HHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCC
T ss_pred cCCCCCEEECCCCcCc----c-----hHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhh
Confidence 7788888888877542 0 00122 233567788888888887765432 245678888888777665544
Q ss_pred chhHHHHHhhhccccccceeeeccccchhhhHHHHHHHHhccceeeccccc
Q 005708 250 LSDFIELFLEKFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALAEVN 300 (681)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 300 (681)
. ... ++++.+++.++ .+..+|. ...+++|+.|++.++.
T Consensus 270 ~---------~~~-~~L~~L~Ls~N-~l~~~p~--~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 270 K---------GLP-AKLSVLDLSYN-RLDRNPS--PDELPQVGNLSLKGNP 307 (312)
T ss_dssp S---------SCC-SEEEEEECCSS-CCCSCCC--TTTSCEEEEEECTTCT
T ss_pred h---------hcc-CCceEEECCCC-CCCCChh--HhhCCCCCEEeccCCC
Confidence 3 223 67777777765 2333333 2336778888876553
No 87
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=1.2e-16 Score=159.54 Aligned_cols=191 Identities=20% Similarity=0.225 Sum_probs=160.9
Q ss_pred ccEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEEEccCCCC
Q 005708 38 LTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLRTLSLHDCRR 117 (681)
Q Consensus 38 lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~ 117 (681)
+..+.+..+.+..+.....+++|+.|++++|.+..++. +..+++|++|++++|++..++. ++++++|++|++++|.
T Consensus 26 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~- 101 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK- 101 (291)
T ss_dssp HHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-
T ss_pred HHHHHhcCCCcccccchhhcCcccEEEccCCCcccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-
Confidence 33444555555554444478999999999999999875 7899999999999999988877 9999999999999999
Q ss_pred CCCCcccCCCCCccEEEcccCCCcccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcccccccchhh
Q 005708 118 FGDLPLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHWQFESEED 197 (681)
Q Consensus 118 ~~~l~~l~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 197 (681)
++.++.++++++|++|++++|.++.++ .+..+++|++|++++|. +..++. +.++++|++|++++|.+.
T Consensus 102 l~~~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~N~l~-------- 169 (291)
T 1h6t_A 102 VKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQIS-------- 169 (291)
T ss_dssp CCCGGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCCC--------
T ss_pred CCCChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcchh--hccCCCCCEEEccCCccc--------
Confidence 888889999999999999999999884 68999999999999965 455643 899999999999998642
Q ss_pred hhhccchhhhcCCCCCcEEEEeCCCCCCCCCCCCCCCccEEEEEecCCcCCC
Q 005708 198 ARSNAKFIELGALSRLTSLHIDIPKGKIMPSDMSFQNLTSFSIKIGDLEEDP 249 (681)
Q Consensus 198 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 249 (681)
..+ .+..+++|+.|++++|.+..++....+++|+.|++.++.....+
T Consensus 170 ----~~~-~l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 170 ----DIV-PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp ----CCG-GGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEEECCC
T ss_pred ----cch-hhcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCcccCCc
Confidence 222 28999999999999999988877788999999999988665443
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.70 E-value=5.1e-16 Score=151.59 Aligned_cols=167 Identities=25% Similarity=0.335 Sum_probs=143.4
Q ss_pred EEeCCcccCCCCCCCCCCccEEEccCCCCccCCCCC--CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCC
Q 005708 20 IKAGVELKDWPSINTFEDLTGISLMFNDIHEVPDEL--ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSL 97 (681)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~lr~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~l 97 (681)
...+..+..+|.- -.++++.|++++|.+..++... .+++|++|++++|.+..+++..|..+++|++|++++|++..+
T Consensus 20 ~~~~~~l~~~p~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 98 (251)
T 3m19_A 20 DCQGKSLDSVPSG-IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98 (251)
T ss_dssp ECTTCCCSSCCSC-CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC
T ss_pred ecCCCCccccCCC-CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccccc
Confidence 3344557777752 2368999999999999887643 899999999999999999888889999999999999999877
Q ss_pred C-ccccCCCCCcEEEccCCCCCCCCc--ccCCCCCccEEEcccCCCcccch-hhcCCccCcEEeccCCCCCCccChhhhc
Q 005708 98 P-SSLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCVHLELIPRDVLS 173 (681)
Q Consensus 98 p-~~i~~l~~L~~L~L~~~~~~~~l~--~l~~L~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~l~ 173 (681)
| ..++.+++|++|++++|. ++.+| .++++++|++|++++|.++.+|. .++.+++|++|++++|. +..++...+.
T Consensus 99 ~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~ 176 (251)
T 3m19_A 99 PLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFD 176 (251)
T ss_dssp CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTT
T ss_pred ChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc-CCccCHHHHh
Confidence 6 457899999999999998 77776 57999999999999999999887 68999999999999965 5577766689
Q ss_pred CCCCCcEEEcccCccc
Q 005708 174 SLRKLEELYMSHSFCH 189 (681)
Q Consensus 174 ~l~~L~~L~l~~~~~~ 189 (681)
++++|+.|++++|.+.
T Consensus 177 ~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 177 RLGKLQTITLFGNQFD 192 (251)
T ss_dssp TCTTCCEEECCSCCBC
T ss_pred CCCCCCEEEeeCCcee
Confidence 9999999999998753
No 89
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.69 E-value=1.1e-16 Score=175.24 Aligned_cols=181 Identities=28% Similarity=0.319 Sum_probs=151.8
Q ss_pred ccCCCCCCCCCCccEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccCCC
Q 005708 26 LKDWPSINTFEDLTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLI 105 (681)
Q Consensus 26 ~~~~~~~~~l~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~ 105 (681)
+..+.....+++|+.|+++++.+..++....+++|+.|++++|.+..+++ |..+++|++|+|++|.+..+| .++.++
T Consensus 33 i~~~~~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~ 109 (605)
T 1m9s_A 33 VTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLK 109 (605)
T ss_dssp TTSEECHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCT
T ss_pred cccccchhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh-hhccCC
Confidence 44445566778899999999999888765589999999999999998887 789999999999999998876 688999
Q ss_pred CCcEEEccCCCCCCCCcccCCCCCccEEEcccCCCcccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEccc
Q 005708 106 NLRTLSLHDCRRFGDLPLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSH 185 (681)
Q Consensus 106 ~L~~L~L~~~~~~~~l~~l~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~ 185 (681)
+|++|+|++|. +..++.++.+++|+.|++++|.++.+ ..++.+++|++|+|++|. +..+++ +..+++|+.|++++
T Consensus 110 ~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~ 184 (605)
T 1m9s_A 110 KLKSLSLEHNG-ISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSK 184 (605)
T ss_dssp TCCEEECTTSC-CCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCS
T ss_pred CCCEEEecCCC-CCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh--hccCCCCCEEECcC
Confidence 99999999998 77888899999999999999999888 578899999999999965 445554 78999999999999
Q ss_pred CcccccccchhhhhhccchhhhcCCCCCcEEEEeCCCCCCCC
Q 005708 186 SFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKGKIMP 227 (681)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 227 (681)
|.+. .+..+..+++|+.|++++|.+...|
T Consensus 185 N~i~-------------~l~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 185 NHIS-------------DLRALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp SCCC-------------BCGGGTTCTTCSEEECCSEEEECCC
T ss_pred CCCC-------------CChHHccCCCCCEEEccCCcCcCCc
Confidence 8641 2356888999999999998775544
No 90
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.69 E-value=1.1e-16 Score=164.64 Aligned_cols=176 Identities=16% Similarity=0.153 Sum_probs=112.1
Q ss_pred cEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCC-CCCCc-cccCCCCCcEEE-ccCC
Q 005708 39 TGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRG-FSLPS-SLSFLINLRTLS-LHDC 115 (681)
Q Consensus 39 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~-~~lp~-~i~~l~~L~~L~-L~~~ 115 (681)
+.++.+++.++.+|..+ .+++++|++++|.+..+|.+.|+++++|++|+|++|++ +.+|. +|.++++|+.+. +.+|
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 45667777777777655 35777888888888777777777788888888888876 44543 466777766543 4444
Q ss_pred CCCCCCc--ccCCCCCccEEEcccCCCcccch-hhcCCccCcEEeccCCCCCCccChhhhcCCC-CCcEEEcccCccccc
Q 005708 116 RRFGDLP--LIGELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCVHLELIPRDVLSSLR-KLEELYMSHSFCHWQ 191 (681)
Q Consensus 116 ~~~~~l~--~l~~L~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~ 191 (681)
+ +..++ .+.++++|++|++++|.++.+|. .+....++..|++.++..+..++...+..+. .++.|++++|.+.
T Consensus 91 ~-l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-- 167 (350)
T 4ay9_X 91 N-LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-- 167 (350)
T ss_dssp T-CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC--
T ss_pred c-ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc--
Confidence 4 66654 67777888888888777776654 3455566777777766666666655445443 4666777666431
Q ss_pred ccchhhhhhccchhhhcCCCCCcEEEEeC-CCCCCCCC
Q 005708 192 FESEEDARSNAKFIELGALSRLTSLHIDI-PKGKIMPS 228 (681)
Q Consensus 192 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~ 228 (681)
.++.......+|++|++.+ |.+..+|.
T Consensus 168 ----------~i~~~~f~~~~L~~l~l~~~n~l~~i~~ 195 (350)
T 4ay9_X 168 ----------EIHNSAFNGTQLDELNLSDNNNLEELPN 195 (350)
T ss_dssp ----------EECTTSSTTEEEEEEECTTCTTCCCCCT
T ss_pred ----------CCChhhccccchhHHhhccCCcccCCCH
Confidence 2333333445566666653 44444443
No 91
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.66 E-value=1.7e-15 Score=145.44 Aligned_cols=148 Identities=26% Similarity=0.340 Sum_probs=129.1
Q ss_pred ccEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCc-cccCCCCCcEEEccCCC
Q 005708 38 LTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPS-SLSFLINLRTLSLHDCR 116 (681)
Q Consensus 38 lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~~ 116 (681)
.+.++.+++.+..+|.... ++|++|++++|.+..+++..|..+++|++|+|++|++..+|. .++.+++|++|++++|.
T Consensus 21 ~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP-TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEeEccCCCcCccCCCCC-CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 4578899999998887654 899999999999998877778999999999999999988875 46899999999999998
Q ss_pred CCCCCc--ccCCCCCccEEEcccCCCcccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcc
Q 005708 117 RFGDLP--LIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFC 188 (681)
Q Consensus 117 ~~~~l~--~l~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 188 (681)
++.++ .++.+++|++|++++|.++.+|..+..+++|++|++++| .+..++...+..+++|+.|++++|..
T Consensus 100 -l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 100 -LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp -CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred -CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 77776 578999999999999999999999999999999999995 56677766688899999999988864
No 92
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=1.9e-16 Score=155.39 Aligned_cols=169 Identities=21% Similarity=0.181 Sum_probs=107.9
Q ss_pred CCCccEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEEEccC
Q 005708 35 FEDLTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLRTLSLHD 114 (681)
Q Consensus 35 l~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~ 114 (681)
+.++..++++.+.+..++....+++|++|++++|.+..++. +..+++|++|++++|++..+|. ++++++|++|++++
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccchH--HhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCC
Confidence 34455556666666655533366677777777777666662 5667777777777777766665 66777777777777
Q ss_pred CCCCCCCcccCCCCCccEEEcccCCCcccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcccccccc
Q 005708 115 CRRFGDLPLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHWQFES 194 (681)
Q Consensus 115 ~~~~~~l~~l~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 194 (681)
|. ++.+|.+.. ++|++|++++|.++.+| .+..+++|++|++++|. +..++. ++.+++|+.|++++|.+.
T Consensus 95 N~-l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~L~~L~L~~N~i~----- 163 (263)
T 1xeu_A 95 NR-LKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDLHGNEIT----- 163 (263)
T ss_dssp SC-CSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGG--GGGCTTCCEEECTTSCCC-----
T ss_pred Cc-cCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCChH--HccCCCCCEEECCCCcCc-----
Confidence 76 666664444 67777777777776664 46677777777777743 444542 666777777777766531
Q ss_pred hhhhhhccchhhhcCCCCCcEEEEeCCCCCC
Q 005708 195 EEDARSNAKFIELGALSRLTSLHIDIPKGKI 225 (681)
Q Consensus 195 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 225 (681)
....+..+++|+.|++++|.+..
T Consensus 164 --------~~~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 164 --------NTGGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp --------BCTTSTTCCCCCEEEEEEEEEEC
T ss_pred --------chHHhccCCCCCEEeCCCCcccC
Confidence 11456666777777777665543
No 93
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.65 E-value=1.3e-15 Score=145.23 Aligned_cols=147 Identities=25% Similarity=0.367 Sum_probs=122.4
Q ss_pred cEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCC-CccccCCCCCcEEEccCCCC
Q 005708 39 TGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSL-PSSLSFLINLRTLSLHDCRR 117 (681)
Q Consensus 39 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~~ 117 (681)
+.++++++.+..+|.... ++|+.|++++|.+..++...|..+++|++|+|++|++..+ |..+.++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~- 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK- 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-
Confidence 578888888888887654 7899999999999988877788999999999999999665 7788999999999999998
Q ss_pred CCCCc--ccCCCCCccEEEcccCCCccc-chhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcc
Q 005708 118 FGDLP--LIGELSLLEILDLSESDVSEI-PVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFC 188 (681)
Q Consensus 118 ~~~l~--~l~~L~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 188 (681)
++.+| .+.++++|++|++++|.++.+ |..|..+++|++|++++|. +..++...+..+++|++|++++|.+
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCc
Confidence 77777 578899999999999999877 4578889999999999854 5566665578888888888888754
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.65 E-value=2.8e-16 Score=158.66 Aligned_cols=215 Identities=14% Similarity=0.094 Sum_probs=125.3
Q ss_pred CccEEEccCCCCcc-----CCCCCCCCCCcEEEccCCCCCCCChHHH--hCCCCccEEEecCCCCCC-CC----ccccCC
Q 005708 37 DLTGISLMFNDIHE-----VPDELECPKLQALFLQENSPLAIPDRFF--QGMKDLKVLDLGGIRGFS-LP----SSLSFL 104 (681)
Q Consensus 37 ~lr~L~l~~~~~~~-----l~~~~~~~~Lr~L~l~~~~~~~l~~~~~--~~l~~Lr~L~L~~~~~~~-lp----~~i~~l 104 (681)
.++.+.+....+.. +.....+++|++|++++|.+....+..+ ..+++|++|++++|.+.. .+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 45666666655531 1112234567777777777664332223 667777777777777743 22 223456
Q ss_pred CCCcEEEccCCCCCCCCc--ccCCCCCccEEEcccCCCcc---cch--hhcCCccCcEEeccCCCCCCccCh---hhhcC
Q 005708 105 INLRTLSLHDCRRFGDLP--LIGELSLLEILDLSESDVSE---IPV--SFGRLGHLRLLDLTDCVHLELIPR---DVLSS 174 (681)
Q Consensus 105 ~~L~~L~L~~~~~~~~l~--~l~~L~~L~~L~l~~~~i~~---lp~--~i~~l~~L~~L~L~~~~~~~~~~~---~~l~~ 174 (681)
++|++|++++|. +..++ .++++++|++|++++|.+.. ++. .++.+++|++|++++|. +..++. ..+++
T Consensus 145 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 145 PGLKVLSIAQAH-SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAA 222 (310)
T ss_dssp SCCCEEEEECCS-SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHH
T ss_pred cCCCEEEeeCCC-cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhc
Confidence 777777777777 44443 66677777777777776542 322 23567777777777754 333332 12456
Q ss_pred CCCCcEEEcccCcccccccchhhhhhccchhhhcCC---CCCcEEEEeCCCCCCCCCCCCCCCccEEEEEecCCcCCCch
Q 005708 175 LRKLEELYMSHSFCHWQFESEEDARSNAKFIELGAL---SRLTSLHIDIPKGKIMPSDMSFQNLTSFSIKIGDLEEDPLS 251 (681)
Q Consensus 175 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 251 (681)
+++|++|++++|.+.. ..+..+..+ ++|++|++++|.+..+|... .++|+.|++..+....++.
T Consensus 223 l~~L~~L~Ls~N~l~~-----------~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~-~~~L~~L~Ls~N~l~~~~~- 289 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRA-----------TVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL-PAKLRVLDLSSNRLNRAPQ- 289 (310)
T ss_dssp TCCCSSEECTTSCCCC-----------CCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC-CSCCSCEECCSCCCCSCCC-
T ss_pred CCCCCEEECCCCCCCc-----------cchhhHHhccCcCcCCEEECCCCCCCchhhhh-cCCCCEEECCCCcCCCCch-
Confidence 6777777777765321 123333333 57777777777776666543 2677777777766655432
Q ss_pred hHHHHHhhhccccccceeeeccc
Q 005708 252 DFIELFLEKFNKRCSRAMGLSQD 274 (681)
Q Consensus 252 ~~~~~~~~~~~~~~l~~l~l~~~ 274 (681)
....++++.+.+.++
T Consensus 290 --------~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 290 --------PDELPEVDNLTLDGN 304 (310)
T ss_dssp --------TTSCCCCSCEECSST
T ss_pred --------hhhCCCccEEECcCC
Confidence 224566777776655
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.64 E-value=1.9e-16 Score=173.32 Aligned_cols=193 Identities=20% Similarity=0.226 Sum_probs=163.2
Q ss_pred CCccEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEEEccCC
Q 005708 36 EDLTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLRTLSLHDC 115 (681)
Q Consensus 36 ~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~ 115 (681)
..+..+.+..+.+..+.....+++|+.|++++|.+..++. |..+++|+.|+|++|.+..++. +..+++|++|+|++|
T Consensus 21 ~~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS
T ss_pred HHHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC
Confidence 3455556666666665555578999999999999999875 7999999999999999988877 899999999999999
Q ss_pred CCCCCCcccCCCCCccEEEcccCCCcccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcccccccch
Q 005708 116 RRFGDLPLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHWQFESE 195 (681)
Q Consensus 116 ~~~~~l~~l~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 195 (681)
. +..+|.++.+++|++|++++|.+..+| .+..+++|+.|+|++|. +..++. +..+++|+.|++++|.+.
T Consensus 98 ~-l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~------ 166 (605)
T 1m9s_A 98 K-IKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQIS------ 166 (605)
T ss_dssp C-CCCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG--GGSCTTCSEEECCSSCCC------
T ss_pred C-CCCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCc-cCCchh--hcccCCCCEEECcCCcCC------
Confidence 8 888999999999999999999999875 58999999999999965 445543 899999999999998642
Q ss_pred hhhhhccchhhhcCCCCCcEEEEeCCCCCCCCCCCCCCCccEEEEEecCCcCCC
Q 005708 196 EDARSNAKFIELGALSRLTSLHIDIPKGKIMPSDMSFQNLTSFSIKIGDLEEDP 249 (681)
Q Consensus 196 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 249 (681)
..+. +..+++|+.|++++|.+..++....+++|+.|++..+.....+
T Consensus 167 ------~~~~-l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 167 ------DIVP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp ------CCGG-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEEECCC
T ss_pred ------Cchh-hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCcCcCCc
Confidence 2222 8999999999999999988876688999999999887664443
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.64 E-value=1.1e-15 Score=143.24 Aligned_cols=149 Identities=19% Similarity=0.201 Sum_probs=99.8
Q ss_pred CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEEEccCCCCCCC-Cc-ccCCCCCccEE
Q 005708 56 ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLRTLSLHDCRRFGD-LP-LIGELSLLEIL 133 (681)
Q Consensus 56 ~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~-l~-~l~~L~~L~~L 133 (681)
.+++|+.|++++|.+..++. +..+++|++|++++|.+..++ .++.+++|++|++++|. ++. .+ .++++++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKD-VTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCSCCTT--GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTT-CBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCccChHH--HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCc-cCcccChhhcCCCCCCEE
Confidence 55677777777777776662 567777777777777665544 56677777777777776 443 23 67777777777
Q ss_pred EcccCCCcc-cchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcccccccchhhhhhccchhhhcCCCC
Q 005708 134 DLSESDVSE-IPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHWQFESEEDARSNAKFIELGALSR 212 (681)
Q Consensus 134 ~l~~~~i~~-lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 212 (681)
++++|.++. .|..++.+++|++|++++|..++.+|. +.++++|++|++++|.+. .+..+..+++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~-------------~~~~l~~l~~ 182 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVH-------------DYRGIEDFPK 182 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCC-------------CCTTGGGCSS
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCc-------------ChHHhccCCC
Confidence 777777763 566677777777777777655666663 677777777777776531 1225667777
Q ss_pred CcEEEEeCCCC
Q 005708 213 LTSLHIDIPKG 223 (681)
Q Consensus 213 L~~L~l~~~~~ 223 (681)
|++|++++|.+
T Consensus 183 L~~L~l~~N~i 193 (197)
T 4ezg_A 183 LNQLYAFSQTI 193 (197)
T ss_dssp CCEEEECBC--
T ss_pred CCEEEeeCccc
Confidence 77777777765
No 97
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.64 E-value=1.3e-16 Score=163.47 Aligned_cols=148 Identities=17% Similarity=0.131 Sum_probs=105.6
Q ss_pred CCcEEEccCCCCCCCChHHHhCC--CCccEEEecCCCCCCCCccccCCCCCcEEEccCCCCCCC--Cc-ccCCCCCccEE
Q 005708 59 KLQALFLQENSPLAIPDRFFQGM--KDLKVLDLGGIRGFSLPSSLSFLINLRTLSLHDCRRFGD--LP-LIGELSLLEIL 133 (681)
Q Consensus 59 ~Lr~L~l~~~~~~~l~~~~~~~l--~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~--l~-~l~~L~~L~~L 133 (681)
.++.++++++.+. +..+..+ +++++|++++|.+...+..+..+++|++|++++|. +.. ++ .+.++++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEE
Confidence 4677888777655 3445666 78888888888886666667778888888888887 443 45 67788888888
Q ss_pred EcccCCCc-ccchhhcCCccCcEEeccCCCCCCc--cChhhhcCCCCCcEEEcccC-cccccccchhhhhhccchhhhcC
Q 005708 134 DLSESDVS-EIPVSFGRLGHLRLLDLTDCVHLEL--IPRDVLSSLRKLEELYMSHS-FCHWQFESEEDARSNAKFIELGA 209 (681)
Q Consensus 134 ~l~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~--~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~l~~ 209 (681)
++++|.++ ..|..++.+++|++|++++|..+.. ++.. +.++++|++|++++| .+ .....+..+..
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l----------~~~~~~~~~~~ 192 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDF----------TEKHVQVAVAH 192 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTC----------CHHHHHHHHHH
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCc----------ChHHHHHHHHh
Confidence 88888776 5677788888888888888754443 3433 677888888888777 43 11124555667
Q ss_pred CC-CCcEEEEeCC
Q 005708 210 LS-RLTSLHIDIP 221 (681)
Q Consensus 210 l~-~L~~L~l~~~ 221 (681)
++ +|++|++++|
T Consensus 193 l~~~L~~L~l~~~ 205 (336)
T 2ast_B 193 VSETITQLNLSGY 205 (336)
T ss_dssp SCTTCCEEECCSC
T ss_pred cccCCCEEEeCCC
Confidence 77 7777777765
No 98
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.64 E-value=1.2e-15 Score=149.73 Aligned_cols=156 Identities=21% Similarity=0.228 Sum_probs=138.2
Q ss_pred CcccCCCCCCCCCCccEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccC
Q 005708 24 VELKDWPSINTFEDLTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSF 103 (681)
Q Consensus 24 ~~~~~~~~~~~l~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~ 103 (681)
+.+..++.+..+++|+.|++++|.+..++....+++|++|++++|.+..++. |..+++|++|++++|++..+|....
T Consensus 29 ~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~- 105 (263)
T 1xeu_A 29 QSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS- 105 (263)
T ss_dssp SCTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC-
T ss_pred CCcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcccc-
Confidence 3456666778889999999999999999855589999999999999999987 7999999999999999988886544
Q ss_pred CCCCcEEEccCCCCCCCCcccCCCCCccEEEcccCCCcccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEc
Q 005708 104 LINLRTLSLHDCRRFGDLPLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYM 183 (681)
Q Consensus 104 l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l 183 (681)
.+|++|++++|. ++.++.++++++|++|++++|.++.+| .++.+++|++|++++|.. ..++. +..+++|+.|++
T Consensus 106 -~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i-~~~~~--l~~l~~L~~L~l 179 (263)
T 1xeu_A 106 -ACLSRLFLDNNE-LRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEI-TNTGG--LTRLKKVNWIDL 179 (263)
T ss_dssp -SSCCEEECCSSC-CSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCC-CBCTT--STTCCCCCEEEE
T ss_pred -CcccEEEccCCc-cCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcC-cchHH--hccCCCCCEEeC
Confidence 999999999998 888899999999999999999999987 799999999999999654 45533 899999999999
Q ss_pred ccCcc
Q 005708 184 SHSFC 188 (681)
Q Consensus 184 ~~~~~ 188 (681)
++|.+
T Consensus 180 ~~N~~ 184 (263)
T 1xeu_A 180 TGQKC 184 (263)
T ss_dssp EEEEE
T ss_pred CCCcc
Confidence 99864
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.64 E-value=1.2e-15 Score=144.33 Aligned_cols=145 Identities=26% Similarity=0.403 Sum_probs=85.9
Q ss_pred EEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCcc-ccCCCCCcEEEccCCCCC
Q 005708 40 GISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSS-LSFLINLRTLSLHDCRRF 118 (681)
Q Consensus 40 ~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~-i~~l~~L~~L~L~~~~~~ 118 (681)
.++.+++.+..+|... .++|++|++++|.+..++...|..+++|++|++++|++..+|.. ++.+++|++|++++|. +
T Consensus 11 ~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l 88 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-L 88 (208)
T ss_dssp EEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-C
T ss_pred EEEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-C
Confidence 4555555555555433 34666666666666666655556666666666666666555443 4566666666666666 4
Q ss_pred CCCc--ccCCCCCccEEEcccCCCcccchh-hcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCc
Q 005708 119 GDLP--LIGELSLLEILDLSESDVSEIPVS-FGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSF 187 (681)
Q Consensus 119 ~~l~--~l~~L~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 187 (681)
+.++ .++++++|++|++++|.++.+|.. +.++++|++|++++|. +..++...+.++++|++|++++|.
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCC
Confidence 4444 356666666666666666655543 4566666666666643 334554445666666666666653
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.63 E-value=1.4e-15 Score=142.31 Aligned_cols=150 Identities=19% Similarity=0.213 Sum_probs=130.5
Q ss_pred CCCCCCccEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCC-CCccccCCCCCcEE
Q 005708 32 INTFEDLTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFS-LPSSLSFLINLRTL 110 (681)
Q Consensus 32 ~~~l~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~-lp~~i~~l~~L~~L 110 (681)
...+++++.|++++|.+..++....+++|++|++++|.+..++. +..+++|++|++++|.+.. .|..++.+++|++|
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGG--GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchh--hhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 35677899999999999988855589999999999998877763 7899999999999999954 78889999999999
Q ss_pred EccCCCCCCC-Cc-ccCCCCCccEEEcccCC-CcccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCc
Q 005708 111 SLHDCRRFGD-LP-LIGELSLLEILDLSESD-VSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSF 187 (681)
Q Consensus 111 ~L~~~~~~~~-l~-~l~~L~~L~~L~l~~~~-i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 187 (681)
++++|. +.. .+ .++++++|++|++++|. ++.+| .+..+++|++|++++|. +..++. +..+++|++|++++|.
T Consensus 118 ~Ls~n~-i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~~--l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 118 DISHSA-HDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYRG--IEDFPKLNQLYAFSQT 192 (197)
T ss_dssp ECCSSB-CBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCTT--GGGCSSCCEEEECBC-
T ss_pred EecCCc-cCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChHH--hccCCCCCEEEeeCcc
Confidence 999999 554 44 89999999999999998 88887 79999999999999965 556663 8999999999999986
Q ss_pred c
Q 005708 188 C 188 (681)
Q Consensus 188 ~ 188 (681)
+
T Consensus 193 i 193 (197)
T 4ezg_A 193 I 193 (197)
T ss_dssp -
T ss_pred c
Confidence 4
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.62 E-value=3.5e-15 Score=141.16 Aligned_cols=156 Identities=23% Similarity=0.320 Sum_probs=132.8
Q ss_pred CCcccCCCCCCCCCCccEEEccCCCCccCCCCC--CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCcc
Q 005708 23 GVELKDWPSINTFEDLTGISLMFNDIHEVPDEL--ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSS 100 (681)
Q Consensus 23 ~~~~~~~~~~~~l~~lr~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~ 100 (681)
+.++..+|. ...+++++|++++|.+..++... .+++|++|++++|.+..++...|..+++|++|++++|.+..+|..
T Consensus 16 ~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 94 (208)
T 2o6s_A 16 SQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNG 94 (208)
T ss_dssp SSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHh
Confidence 345556663 33578999999999999887754 899999999999999999988889999999999999999887754
Q ss_pred -ccCCCCCcEEEccCCCCCCCCc--ccCCCCCccEEEcccCCCcccchh-hcCCccCcEEeccCCCCCCccChhhhcCCC
Q 005708 101 -LSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSESDVSEIPVS-FGRLGHLRLLDLTDCVHLELIPRDVLSSLR 176 (681)
Q Consensus 101 -i~~l~~L~~L~L~~~~~~~~l~--~l~~L~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~ 176 (681)
++++++|++|++++|. ++.++ .++++++|++|++++|.++.+|.. +..+++|++|++++|... +.++
T Consensus 95 ~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--------~~~~ 165 (208)
T 2o6s_A 95 VFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--------CTCP 165 (208)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC--------CCTT
T ss_pred HhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee--------cCCC
Confidence 6899999999999998 77776 589999999999999999988775 789999999999997543 4566
Q ss_pred CCcEEEcccCcc
Q 005708 177 KLEELYMSHSFC 188 (681)
Q Consensus 177 ~L~~L~l~~~~~ 188 (681)
+|+.|+++.|..
T Consensus 166 ~l~~L~~~~n~~ 177 (208)
T 2o6s_A 166 GIRYLSEWINKH 177 (208)
T ss_dssp TTHHHHHHHHHC
T ss_pred CHHHHHHHHHhC
Confidence 788888877753
No 102
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.62 E-value=3.6e-16 Score=160.15 Aligned_cols=176 Identities=16% Similarity=0.076 Sum_probs=85.3
Q ss_pred CCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCC--CCccccCCCCCcEEEccCCCCCCCCc-ccCCCCCccEEE
Q 005708 58 PKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFS--LPSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILD 134 (681)
Q Consensus 58 ~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~--lp~~i~~l~~L~~L~L~~~~~~~~l~-~l~~L~~L~~L~ 134 (681)
++++.|++++|.+...+..+ ..+++|++|++++|.+.. +|..+..+++|++|++++|......+ .++++++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 45555555555555443332 345555555555555531 44455555555566555554211223 455555566666
Q ss_pred cccC-CCc--ccchhhcCCccCcEEeccCCCCCCc--cChhhhcCCC-CCcEEEcccCcccccccchhhhhhccchhhhc
Q 005708 135 LSES-DVS--EIPVSFGRLGHLRLLDLTDCVHLEL--IPRDVLSSLR-KLEELYMSHSFCHWQFESEEDARSNAKFIELG 208 (681)
Q Consensus 135 l~~~-~i~--~lp~~i~~l~~L~~L~L~~~~~~~~--~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~ 208 (681)
+++| .++ .+|..+.++++|++|++++|..+.. ++. .+.+++ +|++|++++|.... .....+..+.
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~l~~~L~~L~l~~~~~~~--------~~~~l~~~~~ 219 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV-AVAHVSETITQLNLSGYRKNL--------QKSDLSTLVR 219 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCCEEECCSCGGGS--------CHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH-HHHhcccCCCEEEeCCCcccC--------CHHHHHHHHh
Confidence 5555 444 2454555555566666555522322 222 245555 56666555552100 0112334445
Q ss_pred CCCCCcEEEEeCCC-CC-C-CCCCCCCCCccEEEEEec
Q 005708 209 ALSRLTSLHIDIPK-GK-I-MPSDMSFQNLTSFSIKIG 243 (681)
Q Consensus 209 ~l~~L~~L~l~~~~-~~-~-~~~~~~l~~L~~L~l~~~ 243 (681)
.+++|++|++++|. +. . ++....+++|+.|++.+|
T Consensus 220 ~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 220 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 55555666655555 21 1 111144455555555544
No 103
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.61 E-value=6.9e-16 Score=155.82 Aligned_cols=158 Identities=15% Similarity=0.119 Sum_probs=72.3
Q ss_pred CCccEEEecCCCC-CCCCccc--cCCCCCcEEEccCCCCCCCCc-----ccCCCCCccEEEcccCCCcccc-hhhcCCcc
Q 005708 82 KDLKVLDLGGIRG-FSLPSSL--SFLINLRTLSLHDCRRFGDLP-----LIGELSLLEILDLSESDVSEIP-VSFGRLGH 152 (681)
Q Consensus 82 ~~Lr~L~L~~~~~-~~lp~~i--~~l~~L~~L~L~~~~~~~~l~-----~l~~L~~L~~L~l~~~~i~~lp-~~i~~l~~ 152 (681)
++|++|++++|.+ +..|..+ +.+++|++|++++|......+ .+..+++|++|++++|.+..+| ..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 4455555555555 2344444 555555555555555222211 2234555555555555555443 34555555
Q ss_pred CcEEeccCCCCCCc--cCh-hhhcCCCCCcEEEcccCcccccccchhhhhhccchhh-hcCCCCCcEEEEeCCCCCCC-C
Q 005708 153 LRLLDLTDCVHLEL--IPR-DVLSSLRKLEELYMSHSFCHWQFESEEDARSNAKFIE-LGALSRLTSLHIDIPKGKIM-P 227 (681)
Q Consensus 153 L~~L~L~~~~~~~~--~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~-~ 227 (681)
|++|++++|...+. ++. ..++++++|++|++++|.+. . ....+.. ++.+++|++|++++|.+... |
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~----~-----l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p 241 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME----T-----PTGVCAALAAAGVQPHSLDLSHNSLRATVN 241 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC----C-----HHHHHHHHHHHTCCCSSEECTTSCCCCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC----c-----hHHHHHHHHhcCCCCCEEECCCCCCCccch
Confidence 55555555443221 111 11234555555555555321 0 0011111 34555555555555555433 2
Q ss_pred CC-CCC---CCccEEEEEecCCcCC
Q 005708 228 SD-MSF---QNLTSFSIKIGDLEED 248 (681)
Q Consensus 228 ~~-~~l---~~L~~L~l~~~~~~~~ 248 (681)
.. ..+ ++|+.|++.++.....
T Consensus 242 ~~~~~~~~~~~L~~L~Ls~N~l~~l 266 (310)
T 4glp_A 242 PSAPRCMWSSALNSLNLSFAGLEQV 266 (310)
T ss_dssp SCCSSCCCCTTCCCEECCSSCCCSC
T ss_pred hhHHhccCcCcCCEEECCCCCCCch
Confidence 22 222 4555555555544433
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.61 E-value=4.1e-15 Score=141.69 Aligned_cols=147 Identities=16% Similarity=0.252 Sum_probs=117.4
Q ss_pred cEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCC-ChHHHhCCCCccEEEecCCCCCCCCc-cccCCCCCcEEEccCCC
Q 005708 39 TGISLMFNDIHEVPDELECPKLQALFLQENSPLAI-PDRFFQGMKDLKVLDLGGIRGFSLPS-SLSFLINLRTLSLHDCR 116 (681)
Q Consensus 39 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l-~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~~ 116 (681)
+.++++++.++.+|... .+.++.|++++|.+..+ +.++|..+++|++|++++|++..++. .++++++|++|++++|.
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 57888889888888655 35678999999998877 44567889999999999999876654 78889999999999988
Q ss_pred CCCCCc--ccCCCCCccEEEcccCCCccc-chhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcc
Q 005708 117 RFGDLP--LIGELSLLEILDLSESDVSEI-PVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFC 188 (681)
Q Consensus 117 ~~~~l~--~l~~L~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 188 (681)
++.++ .++++++|++|++++|.++.+ |..+..+++|++|++++|. +..+++..+..+++|+.|++++|.+
T Consensus 93 -l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 93 -LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp -CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred -cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCC
Confidence 66665 588899999999999988877 5678888899999998854 4455444478888888888888754
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.59 E-value=1.4e-14 Score=156.57 Aligned_cols=175 Identities=21% Similarity=0.321 Sum_probs=141.7
Q ss_pred CccEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEEEccCCC
Q 005708 37 DLTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLRTLSLHDCR 116 (681)
Q Consensus 37 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~ 116 (681)
+++.|++++|.+..+|..+ .++|++|++++|.+..+| ..+++|++|++++|++..+|. +++ +|++|++++|.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence 7899999999999888765 488999999999999888 357899999999999988988 666 99999999998
Q ss_pred CCCCCcccCCCCCccEEEcccCCCcccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcccccccchh
Q 005708 117 RFGDLPLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHWQFESEE 196 (681)
Q Consensus 117 ~~~~l~~l~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 196 (681)
++.+|. .+++|++|++++|.++.+|. .+++|++|++++|. +..+|. +. ++|+.|++++|.+.
T Consensus 132 -l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls~N~L~------- 193 (571)
T 3cvr_A 132 -LTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDVSTNLLE------- 193 (571)
T ss_dssp -CSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC--CC--TTCCEEECCSSCCS-------
T ss_pred -CCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch--hh--CCCCEEECcCCCCC-------
Confidence 777887 78999999999999999887 67899999999965 556776 45 89999999998642
Q ss_pred hhhhccchhhhcCCCCC-------cEEEEeCCCCCCCCCC-CCCCCccEEEEEecCC
Q 005708 197 DARSNAKFIELGALSRL-------TSLHIDIPKGKIMPSD-MSFQNLTSFSIKIGDL 245 (681)
Q Consensus 197 ~~~~~~~~~~l~~l~~L-------~~L~l~~~~~~~~~~~-~~l~~L~~L~l~~~~~ 245 (681)
.++. +.. +| +.|++++|.+..+|.. ..+++|+.|++.++..
T Consensus 194 -----~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 194 -----SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp -----SCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred -----chhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcC
Confidence 2222 332 55 9999999998888875 5577787777766554
No 106
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.59 E-value=2.9e-16 Score=164.02 Aligned_cols=185 Identities=17% Similarity=0.109 Sum_probs=124.7
Q ss_pred CCCCCCccEEEccCCCCcc-----CCCCC-CCCCCcEEEccCCCCCC----CChHH------HhCCCCccEEEecCCCCC
Q 005708 32 INTFEDLTGISLMFNDIHE-----VPDEL-ECPKLQALFLQENSPLA----IPDRF------FQGMKDLKVLDLGGIRGF 95 (681)
Q Consensus 32 ~~~l~~lr~L~l~~~~~~~-----l~~~~-~~~~Lr~L~l~~~~~~~----l~~~~------~~~l~~Lr~L~L~~~~~~ 95 (681)
+..+++|++|++++|.+.. +...+ .+++|++|++++|.+.. +|..+ |..+++|++|+|++|.+.
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 4556778888888887763 22223 67888888888876553 33333 367888888888888885
Q ss_pred C-----CCccccCCCCCcEEEccCCCCCCCC-----c-ccCCC---------CCccEEEcccCCCc--ccc---hhhcCC
Q 005708 96 S-----LPSSLSFLINLRTLSLHDCRRFGDL-----P-LIGEL---------SLLEILDLSESDVS--EIP---VSFGRL 150 (681)
Q Consensus 96 ~-----lp~~i~~l~~L~~L~L~~~~~~~~l-----~-~l~~L---------~~L~~L~l~~~~i~--~lp---~~i~~l 150 (681)
. +|..+..+++|++|++++|. ++.. + .+..+ ++|++|++++|.+. .+| ..+..+
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence 4 67777888888888888887 4322 1 23333 78888888888875 444 467778
Q ss_pred ccCcEEeccCCCCCCc----cChhhhcCCCCCcEEEcccCcccccccchhhhhhccchhhhcCCCCCcEEEEeCCCCC
Q 005708 151 GHLRLLDLTDCVHLEL----IPRDVLSSLRKLEELYMSHSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKGK 224 (681)
Q Consensus 151 ~~L~~L~L~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 224 (681)
++|++|++++|..... +.+..+.++++|++|++++|.+... .....+..+..+++|++|++++|.+.
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~-------g~~~l~~~l~~~~~L~~L~L~~n~i~ 257 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL-------GSSALAIALKSWPNLRELGLNDCLLS 257 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH-------HHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcH-------HHHHHHHHHccCCCcCEEECCCCCCc
Confidence 8888888888643211 2221267788888888888754110 11345667788888888888887764
No 107
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.59 E-value=2.3e-15 Score=155.52 Aligned_cols=231 Identities=14% Similarity=0.132 Sum_probs=161.7
Q ss_pred CCCccEEEccCCCCccCCC-----CC-CCC-CCcEEEccCCCCCCCChHHHhCC-----CCccEEEecCCCCCCCC-cc-
Q 005708 35 FEDLTGISLMFNDIHEVPD-----EL-ECP-KLQALFLQENSPLAIPDRFFQGM-----KDLKVLDLGGIRGFSLP-SS- 100 (681)
Q Consensus 35 l~~lr~L~l~~~~~~~l~~-----~~-~~~-~Lr~L~l~~~~~~~l~~~~~~~l-----~~Lr~L~L~~~~~~~lp-~~- 100 (681)
.++|++|++++|.+...+. .+ .++ +|++|++++|.+.......|..+ ++|++|++++|.+...+ ..
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 3459999999999987763 22 677 89999999999987765555664 99999999999996544 33
Q ss_pred ---ccCC-CCCcEEEccCCCCCCCCc--c----cCCC-CCccEEEcccCCCc-----ccchhhcCCc-cCcEEeccCCCC
Q 005708 101 ---LSFL-INLRTLSLHDCRRFGDLP--L----IGEL-SLLEILDLSESDVS-----EIPVSFGRLG-HLRLLDLTDCVH 163 (681)
Q Consensus 101 ---i~~l-~~L~~L~L~~~~~~~~l~--~----l~~L-~~L~~L~l~~~~i~-----~lp~~i~~l~-~L~~L~L~~~~~ 163 (681)
+..+ ++|++|++++|. ++..+ . +..+ ++|++|++++|.++ .++..+..++ +|++|++++|..
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 179 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL 179 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC
Confidence 4455 899999999999 66654 2 4453 69999999999888 5566677776 999999999764
Q ss_pred CCccChh---hhcCC-CCCcEEEcccCcccccccchhhhhhccchhhhcCC-CCCcEEEEeCCCCCCCCCC------CCC
Q 005708 164 LELIPRD---VLSSL-RKLEELYMSHSFCHWQFESEEDARSNAKFIELGAL-SRLTSLHIDIPKGKIMPSD------MSF 232 (681)
Q Consensus 164 ~~~~~~~---~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~------~~l 232 (681)
....+.. .+... ++|++|++++|.+... .....+..+... ++|++|++++|.+...+.. ..+
T Consensus 180 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~-------~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l 252 (362)
T 3goz_A 180 ASKNCAELAKFLASIPASVTSLDLSANLLGLK-------SYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSL 252 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS-------CHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTT
T ss_pred chhhHHHHHHHHHhCCCCCCEEECCCCCCChh-------HHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcC
Confidence 4333322 23445 6999999999975321 112356667664 5999999999988665431 567
Q ss_pred CCccEEEEEecCCcCCCchhHHHHHhhhc-cccccceeeeccc
Q 005708 233 QNLTSFSIKIGDLEEDPLSDFIELFLEKF-NKRCSRAMGLSQD 274 (681)
Q Consensus 233 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~~~l~~l~l~~~ 274 (681)
++|+.|++.++.......... ..+.... ..++++.+++.++
T Consensus 253 ~~L~~L~L~~n~l~~i~~~~~-~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 253 KHLQTVYLDYDIVKNMSKEQC-KALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp TTCSEEEEEHHHHTTCCHHHH-HHHHTTSTTCCEEEEECTTSC
T ss_pred CCccEEEeccCCccccCHHHH-HHHHHHhccCCceEEEecCCC
Confidence 889999998886444433222 2222222 3445555555554
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.58 E-value=7.2e-15 Score=151.61 Aligned_cols=171 Identities=20% Similarity=0.226 Sum_probs=131.1
Q ss_pred cEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHh-CCCCccEEEecCCCCCCCC-ccccCCCCCcEEEccCCC
Q 005708 39 TGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQ-GMKDLKVLDLGGIRGFSLP-SSLSFLINLRTLSLHDCR 116 (681)
Q Consensus 39 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~-~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~ 116 (681)
+.++++++.+..+|.... +.++.|++++|.+..++...|. ++++|++|+|++|++..++ ..+.++++|++|++++|.
T Consensus 21 ~~l~c~~~~l~~iP~~~~-~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP-SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCSSCCSSCC-TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccCC-CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 578888888888887552 5688999999999888877777 8899999999999987765 468889999999999988
Q ss_pred CCCCCc--ccCCCCCccEEEcccCCCccc-chhhcCCccCcEEeccCCCCCCccChhhh---cCCCCCcEEEcccCcccc
Q 005708 117 RFGDLP--LIGELSLLEILDLSESDVSEI-PVSFGRLGHLRLLDLTDCVHLELIPRDVL---SSLRKLEELYMSHSFCHW 190 (681)
Q Consensus 117 ~~~~l~--~l~~L~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~~~ 190 (681)
++.++ .+.++++|++|++++|.++.+ |..|..+++|++|+|++| .+..+|...+ .++++|+.|++++|.+.
T Consensus 100 -l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~- 176 (361)
T 2xot_A 100 -LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLK- 176 (361)
T ss_dssp -CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCC-
T ss_pred -CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCC-
Confidence 66665 688899999999999988877 567888999999999884 4667777655 56888888888888642
Q ss_pred cccchhhhhhccchhhhcCCCC--CcEEEEeCCCC
Q 005708 191 QFESEEDARSNAKFIELGALSR--LTSLHIDIPKG 223 (681)
Q Consensus 191 ~~~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~ 223 (681)
......+..++. ++.|++.+|.+
T Consensus 177 ----------~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 177 ----------KLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp ----------CCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred ----------ccCHHHhhhccHhhcceEEecCCCc
Confidence 122345556665 36677777654
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.57 E-value=1.1e-14 Score=150.27 Aligned_cols=167 Identities=24% Similarity=0.299 Sum_probs=140.6
Q ss_pred EEEeCCcccCCCCCCCCCCccEEEccCCCCccCCCCC---CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCC
Q 005708 19 MIKAGVELKDWPSINTFEDLTGISLMFNDIHEVPDEL---ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGF 95 (681)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~lr~L~l~~~~~~~l~~~~---~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~ 95 (681)
+...+..+..+|. .-...++.|++++|.+..++... .+++|++|++++|.+..++...|..+++|++|+|++|++.
T Consensus 23 l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~ 101 (361)
T 2xot_A 23 LSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH 101 (361)
T ss_dssp EECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred EEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCC
Confidence 3444456777775 23456899999999999887653 7899999999999999998878999999999999999998
Q ss_pred CCCc-cccCCCCCcEEEccCCCCCCCC-c-ccCCCCCccEEEcccCCCcccchhh----cCCccCcEEeccCCCCCCccC
Q 005708 96 SLPS-SLSFLINLRTLSLHDCRRFGDL-P-LIGELSLLEILDLSESDVSEIPVSF----GRLGHLRLLDLTDCVHLELIP 168 (681)
Q Consensus 96 ~lp~-~i~~l~~L~~L~L~~~~~~~~l-~-~l~~L~~L~~L~l~~~~i~~lp~~i----~~l~~L~~L~L~~~~~~~~~~ 168 (681)
.++. .+.++.+|++|++++|. +..+ | .+.++++|++|++++|.++.+|..+ ..+++|++|++++| .+..+|
T Consensus 102 ~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~ 179 (361)
T 2xot_A 102 TLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLP 179 (361)
T ss_dssp EECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS-CCCCCC
T ss_pred cCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC-CCCccC
Confidence 7755 68999999999999999 6666 4 8999999999999999999998875 67999999999995 566888
Q ss_pred hhhhcCCCC--CcEEEcccCcc
Q 005708 169 RDVLSSLRK--LEELYMSHSFC 188 (681)
Q Consensus 169 ~~~l~~l~~--L~~L~l~~~~~ 188 (681)
...+..++. |+.|++++|..
T Consensus 180 ~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 180 LTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp HHHHHHSCHHHHTTEECCSSCE
T ss_pred HHHhhhccHhhcceEEecCCCc
Confidence 776888887 48899999865
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.56 E-value=5.7e-14 Score=134.71 Aligned_cols=143 Identities=26% Similarity=0.305 Sum_probs=124.3
Q ss_pred CCcccCCCCCCCCCCccEEEccCCCCccCCCC-C-CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCcc
Q 005708 23 GVELKDWPSINTFEDLTGISLMFNDIHEVPDE-L-ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSS 100 (681)
Q Consensus 23 ~~~~~~~~~~~~l~~lr~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~ 100 (681)
+..+..+|. ...+++++|++++|.+..++.. + .+++|++|++++|.+..++...|..+++|++|+|++|++..+|..
T Consensus 28 ~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 106 (229)
T 3e6j_A 28 SKRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSA 106 (229)
T ss_dssp TSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChh
Confidence 345667775 2348999999999999988543 3 899999999999999999988899999999999999999888654
Q ss_pred -ccCCCCCcEEEccCCCCCCCCc-ccCCCCCccEEEcccCCCcccch-hhcCCccCcEEeccCCCCCCcc
Q 005708 101 -LSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCVHLELI 167 (681)
Q Consensus 101 -i~~l~~L~~L~L~~~~~~~~l~-~l~~L~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~ 167 (681)
+..+++|++|++++|. ++.+| .+.++++|++|++++|.++.+|. .+..+++|++|++++|+.....
T Consensus 107 ~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 107 VFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp TTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred HhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 6899999999999999 77888 88999999999999999998875 5889999999999997755443
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.55 E-value=5.6e-14 Score=133.76 Aligned_cols=142 Identities=26% Similarity=0.342 Sum_probs=122.6
Q ss_pred EeCCcccCCCCCCCCCCccEEEccCCCCccCCCCC--CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCC
Q 005708 21 KAGVELKDWPSINTFEDLTGISLMFNDIHEVPDEL--ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLP 98 (681)
Q Consensus 21 ~~~~~~~~~~~~~~l~~lr~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp 98 (681)
..+..+..+|.- -.++++.|++++|.+..++... .+++|++|++++|.+..+++..|.++++|++|+|++|.+..+|
T Consensus 18 c~~~~l~~iP~~-l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~ 96 (220)
T 2v9t_B 18 CRGKGLTEIPTN-LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP 96 (220)
T ss_dssp CTTSCCSSCCSS-CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCC
T ss_pred cCCCCcCcCCCc-cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccC
Confidence 334567777752 2378999999999999887643 8899999999999999887777899999999999999999887
Q ss_pred cc-ccCCCCCcEEEccCCCCCCCCc--ccCCCCCccEEEcccCCCcccch-hhcCCccCcEEeccCCCCC
Q 005708 99 SS-LSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCVHL 164 (681)
Q Consensus 99 ~~-i~~l~~L~~L~L~~~~~~~~l~--~l~~L~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~ 164 (681)
.. +.++++|++|++++|. ++.++ .+.++++|++|++++|.++.+|. .+..+++|++|++++|+..
T Consensus 97 ~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 97 KSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred HhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 66 6889999999999999 66664 89999999999999999998876 4889999999999997654
No 112
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.55 E-value=3.1e-14 Score=146.20 Aligned_cols=231 Identities=16% Similarity=0.146 Sum_probs=171.8
Q ss_pred EEEeCCcccCCCCCCCCCCccEEEccCCCCccCCCCC--CCCCCcEEEccCCCCC-CCChHHHhCCCCccE-EEecCCCC
Q 005708 19 MIKAGVELKDWPSINTFEDLTGISLMFNDIHEVPDEL--ECPKLQALFLQENSPL-AIPDRFFQGMKDLKV-LDLGGIRG 94 (681)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~lr~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~-~l~~~~~~~l~~Lr~-L~L~~~~~ 94 (681)
+...+.++.++|.- -.++++.|++++|.++.++... .+++|++|++++|.+. .++.+.|.++++++. +.+.+|++
T Consensus 14 v~C~~~~Lt~iP~~-l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l 92 (350)
T 4ay9_X 14 FLCQESKVTEIPSD-LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL 92 (350)
T ss_dssp EEEESTTCCSCCTT-CCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTC
T ss_pred EEecCCCCCccCcC-cCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcc
Confidence 34455667888751 2468999999999999998753 8999999999999985 578778899998875 66777889
Q ss_pred CCC-CccccCCCCCcEEEccCCCCCCCCc--ccCCCCCccEEEccc-CCCcccch-hhcCCc-cCcEEeccCCCCCCccC
Q 005708 95 FSL-PSSLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSE-SDVSEIPV-SFGRLG-HLRLLDLTDCVHLELIP 168 (681)
Q Consensus 95 ~~l-p~~i~~l~~L~~L~L~~~~~~~~l~--~l~~L~~L~~L~l~~-~~i~~lp~-~i~~l~-~L~~L~L~~~~~~~~~~ 168 (681)
..+ |..+..+++|++|++++|. +..+| .+....++.+|++.+ +.+..+|. .+..+. .+++|++++ +.+..++
T Consensus 93 ~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~ 170 (350)
T 4ay9_X 93 LYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIH 170 (350)
T ss_dssp CEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEEC
T ss_pred cccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCC
Confidence 777 5678999999999999998 77776 456667788898876 57887765 455554 689999999 4567888
Q ss_pred hhhhcCCCCCcEEEcccCcccccccchhhhhhccch-hhhcCCCCCcEEEEeCCCCCCCCCCCCCCCccEEEEEecC-Cc
Q 005708 169 RDVLSSLRKLEELYMSHSFCHWQFESEEDARSNAKF-IELGALSRLTSLHIDIPKGKIMPSDMSFQNLTSFSIKIGD-LE 246 (681)
Q Consensus 169 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~-~~ 246 (681)
.. +....+|++|.+.++.. ...++ ..++.+++|+.|++++|.++.+|.. .+.+|+.|.+..+. ..
T Consensus 171 ~~-~f~~~~L~~l~l~~~n~-----------l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~-~~~~L~~L~~l~~~~l~ 237 (350)
T 4ay9_X 171 NS-AFNGTQLDELNLSDNNN-----------LEELPNDVFHGASGPVILDISRTRIHSLPSY-GLENLKKLRARSTYNLK 237 (350)
T ss_dssp TT-SSTTEEEEEEECTTCTT-----------CCCCCTTTTTTEECCSEEECTTSCCCCCCSS-SCTTCCEEECTTCTTCC
T ss_pred hh-hccccchhHHhhccCCc-----------ccCCCHHHhccCcccchhhcCCCCcCccChh-hhccchHhhhccCCCcC
Confidence 77 45677899999875432 22333 3578899999999999999888874 46778877755442 22
Q ss_pred CCCchhHHHHHhhhccccccceeeeccc
Q 005708 247 EDPLSDFIELFLEKFNKRCSRAMGLSQD 274 (681)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~ 274 (681)
..| ..-.+++|+.+.+...
T Consensus 238 ~lP---------~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 238 KLP---------TLEKLVALMEASLTYP 256 (350)
T ss_dssp CCC---------CTTTCCSCCEEECSCH
T ss_pred cCC---------CchhCcChhhCcCCCC
Confidence 222 1235667777777543
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.55 E-value=8e-14 Score=150.72 Aligned_cols=173 Identities=17% Similarity=0.184 Sum_probs=144.4
Q ss_pred EEEeCCcccCCCCCCCCCCccEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCC
Q 005708 19 MIKAGVELKDWPSINTFEDLTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLP 98 (681)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp 98 (681)
+...++.+..+|.- -+++|+.|++++|.+..+| ..+++|++|++++|.+..+|. |.. +|++|++++|.+..+|
T Consensus 64 L~Ls~n~L~~lp~~-l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N~l~~lp 136 (571)
T 3cvr_A 64 LQLNRLNLSSLPDN-LPPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNNQLTMLP 136 (571)
T ss_dssp EECCSSCCSCCCSC-CCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCSSCCSCCC
T ss_pred EEeCCCCCCccCHh-HcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCCCcCCCCC
Confidence 34444567777752 2478999999999999988 457999999999999999987 444 9999999999998898
Q ss_pred ccccCCCCCcEEEccCCCCCCCCcccCCCCCccEEEcccCCCcccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCC
Q 005708 99 SSLSFLINLRTLSLHDCRRFGDLPLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKL 178 (681)
Q Consensus 99 ~~i~~l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L 178 (681)
. .+++|++|++++|. ++.+|. .+++|++|++++|.++.+|. +. ++|++|++++|. +..+|. +.. +|
T Consensus 137 ~---~l~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~-L~~lp~--~~~--~L 202 (571)
T 3cvr_A 137 E---LPALLEYINADNNQ-LTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL-LESLPA--VPV--RN 202 (571)
T ss_dssp C---CCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC-CSSCCC--CC-----
T ss_pred C---cCccccEEeCCCCc-cCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC-CCchhh--HHH--hh
Confidence 8 68999999999999 777887 68999999999999999998 66 999999999964 557876 443 66
Q ss_pred -------cEEEcccCcccccccchhhhhhccchhhhcCCCCCcEEEEeCCCCC
Q 005708 179 -------EELYMSHSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKGK 224 (681)
Q Consensus 179 -------~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 224 (681)
+.|++++|.+ ..++..+..+++|+.|++++|.+.
T Consensus 203 ~~~~~~L~~L~Ls~N~l------------~~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 203 HHSEETEIFFRCRENRI------------THIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp -----CCEEEECCSSCC------------CCCCGGGGGSCTTEEEECCSSSCC
T ss_pred hcccccceEEecCCCcc------------eecCHHHhcCCCCCEEEeeCCcCC
Confidence 9999999964 256777888999999999999874
No 114
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.54 E-value=4.5e-15 Score=153.36 Aligned_cols=174 Identities=16% Similarity=0.113 Sum_probs=100.2
Q ss_pred EEccCCCCccC-CCCCCC-CCCcEEEccCCCCCCCCh----HHHhCCC-CccEEEecCCCCCCC-CccccCC-----CCC
Q 005708 41 ISLMFNDIHEV-PDELEC-PKLQALFLQENSPLAIPD----RFFQGMK-DLKVLDLGGIRGFSL-PSSLSFL-----INL 107 (681)
Q Consensus 41 L~l~~~~~~~l-~~~~~~-~~Lr~L~l~~~~~~~l~~----~~~~~l~-~Lr~L~L~~~~~~~l-p~~i~~l-----~~L 107 (681)
+.++.+.+... +..... ++|++|++++|.+...+. ..|..++ +|++|++++|.+... +..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 45666666533 333333 447888888887777665 5567777 788888887777443 4444443 777
Q ss_pred cEEEccCCCCCCCCc--c----cCCC-CCccEEEcccCCCcccch-h----hcCC-ccCcEEeccCCCCCC----ccChh
Q 005708 108 RTLSLHDCRRFGDLP--L----IGEL-SLLEILDLSESDVSEIPV-S----FGRL-GHLRLLDLTDCVHLE----LIPRD 170 (681)
Q Consensus 108 ~~L~L~~~~~~~~l~--~----l~~L-~~L~~L~l~~~~i~~lp~-~----i~~l-~~L~~L~L~~~~~~~----~~~~~ 170 (681)
++|++++|. ++..+ . +..+ ++|++|++++|.++..+. . +..+ ++|++|++++|.... .++..
T Consensus 83 ~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 83 TSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred cEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 777777777 44333 2 4444 677777777777764432 2 3332 477777777754332 12222
Q ss_pred hhcCCC-CCcEEEcccCcccccccchhhhhhccchhhhcCC-CCCcEEEEeCCCC
Q 005708 171 VLSSLR-KLEELYMSHSFCHWQFESEEDARSNAKFIELGAL-SRLTSLHIDIPKG 223 (681)
Q Consensus 171 ~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~ 223 (681)
+..+. +|++|++++|.+.... .......+... ++|++|++++|.+
T Consensus 162 -l~~~~~~L~~L~Ls~n~l~~~~-------~~~l~~~l~~~~~~L~~L~Ls~N~i 208 (362)
T 3goz_A 162 -LAAIPANVNSLNLRGNNLASKN-------CAELAKFLASIPASVTSLDLSANLL 208 (362)
T ss_dssp -HHTSCTTCCEEECTTSCGGGSC-------HHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred -HhcCCccccEeeecCCCCchhh-------HHHHHHHHHhCCCCCCEEECCCCCC
Confidence 34444 7777777776542110 11222344455 3777777776654
No 115
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.53 E-value=2.6e-15 Score=156.71 Aligned_cols=205 Identities=18% Similarity=0.196 Sum_probs=153.8
Q ss_pred CCCCCCccEEEccCCCCccCC----CC--------CCCCCCcEEEccCCCCCC-----CChHHHhCCCCccEEEecCCCC
Q 005708 32 INTFEDLTGISLMFNDIHEVP----DE--------LECPKLQALFLQENSPLA-----IPDRFFQGMKDLKVLDLGGIRG 94 (681)
Q Consensus 32 ~~~l~~lr~L~l~~~~~~~l~----~~--------~~~~~Lr~L~l~~~~~~~-----l~~~~~~~l~~Lr~L~L~~~~~ 94 (681)
+..+++|++|++++|.+..+. .. ..+++|++|++++|.+.. ++. .+..+++|++|+|++|.+
T Consensus 56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLID-FLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHH-HHHHCTTCCEEECCSSCC
T ss_pred HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHH-HHHhCCCCCEEECcCCCC
Confidence 667899999999998665332 21 267999999999999986 444 468999999999999998
Q ss_pred CC-----CCccccCC---------CCCcEEEccCCCCCC--CCc----ccCCCCCccEEEcccCCCc------ccchhhc
Q 005708 95 FS-----LPSSLSFL---------INLRTLSLHDCRRFG--DLP----LIGELSLLEILDLSESDVS------EIPVSFG 148 (681)
Q Consensus 95 ~~-----lp~~i~~l---------~~L~~L~L~~~~~~~--~l~----~l~~L~~L~~L~l~~~~i~------~lp~~i~ 148 (681)
.. ++..+..+ ++|++|++++|. ++ .++ .+..+++|++|++++|.+. -+|..+.
T Consensus 135 ~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~ 213 (386)
T 2ca6_A 135 GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA 213 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG
T ss_pred CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhh
Confidence 42 33344445 899999999998 54 334 5678999999999999998 2344888
Q ss_pred CCccCcEEeccCCCCC----CccChhhhcCCCCCcEEEcccCcccccccchhhhhhccchhhhc--CCCCCcEEEEeCCC
Q 005708 149 RLGHLRLLDLTDCVHL----ELIPRDVLSSLRKLEELYMSHSFCHWQFESEEDARSNAKFIELG--ALSRLTSLHIDIPK 222 (681)
Q Consensus 149 ~l~~L~~L~L~~~~~~----~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~--~l~~L~~L~l~~~~ 222 (681)
.+++|++|++++|... ..+|.. +..+++|++|++++|.+... .....+..+. .+++|++|++++|.
T Consensus 214 ~~~~L~~L~Ls~n~l~~~g~~~l~~~-l~~~~~L~~L~L~~n~i~~~-------~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 214 YCQELKVLDLQDNTFTHLGSSALAIA-LKSWPNLRELGLNDCLLSAR-------GAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp GCTTCCEEECCSSCCHHHHHHHHHHH-GGGCTTCCEEECTTCCCCHH-------HHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred cCCCccEEECcCCCCCcHHHHHHHHH-HccCCCcCEEECCCCCCchh-------hHHHHHHHHhhccCCCeEEEECcCCc
Confidence 9999999999997642 456665 78999999999999965211 1123456664 49999999999998
Q ss_pred CCC-----CCCC--CCCCCccEEEEEecCCc
Q 005708 223 GKI-----MPSD--MSFQNLTSFSIKIGDLE 246 (681)
Q Consensus 223 ~~~-----~~~~--~~l~~L~~L~l~~~~~~ 246 (681)
+.. ++.. ..+++|+.|++.++...
T Consensus 286 i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 286 IELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp CBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred CCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 865 4443 23567777776665543
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.53 E-value=9.2e-14 Score=132.27 Aligned_cols=145 Identities=19% Similarity=0.217 Sum_probs=123.5
Q ss_pred eCCcccCCCCCCCCCCccEEEccCCCCccCCC-C-C-CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCC
Q 005708 22 AGVELKDWPSINTFEDLTGISLMFNDIHEVPD-E-L-ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLP 98 (681)
Q Consensus 22 ~~~~~~~~~~~~~l~~lr~L~l~~~~~~~l~~-~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp 98 (681)
.++.+..+|. .-...++.|++++|.+..++. . + .+++|++|++++|.+..++...|..+++|++|++++|++..++
T Consensus 19 s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~ 97 (220)
T 2v70_A 19 SNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQ 97 (220)
T ss_dssp CSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccC
Confidence 3455677774 234568999999999998843 2 3 8999999999999999998877999999999999999997776
Q ss_pred c-cccCCCCCcEEEccCCCCCCCC-c-ccCCCCCccEEEcccCCCccc-chhhcCCccCcEEeccCCCCCCccC
Q 005708 99 S-SLSFLINLRTLSLHDCRRFGDL-P-LIGELSLLEILDLSESDVSEI-PVSFGRLGHLRLLDLTDCVHLELIP 168 (681)
Q Consensus 99 ~-~i~~l~~L~~L~L~~~~~~~~l-~-~l~~L~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~~~ 168 (681)
. .++++++|++|++++|. +..+ | .+.++++|++|++++|.++.+ |..+..+++|++|++++|......+
T Consensus 98 ~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 98 HKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp GGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred HhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 5 58899999999999999 6666 4 899999999999999999988 7789999999999999987654433
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.50 E-value=5.8e-14 Score=127.72 Aligned_cols=122 Identities=25% Similarity=0.264 Sum_probs=57.4
Q ss_pred CCccEEEccCCCCc--cCCCCC-CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCC-CCccccCCCCCcEEE
Q 005708 36 EDLTGISLMFNDIH--EVPDEL-ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFS-LPSSLSFLINLRTLS 111 (681)
Q Consensus 36 ~~lr~L~l~~~~~~--~l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~-lp~~i~~l~~L~~L~ 111 (681)
+++++|++++|.+. .++... .+++|++|++++|.+..+ ..|..+++|++|++++|.+.. +|..++++++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555555554 444443 445555555555554444 124445555555555555533 444444455555555
Q ss_pred ccCCCCCCCCc---ccCCCCCccEEEcccCCCcccch----hhcCCccCcEEeccC
Q 005708 112 LHDCRRFGDLP---LIGELSLLEILDLSESDVSEIPV----SFGRLGHLRLLDLTD 160 (681)
Q Consensus 112 L~~~~~~~~l~---~l~~L~~L~~L~l~~~~i~~lp~----~i~~l~~L~~L~L~~ 160 (681)
+++|. ++.+| .++++++|++|++++|.++.+|. .+..+++|++|++++
T Consensus 102 Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 102 LSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp CBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred ccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence 55544 33332 34444445555554444444443 344444444444444
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.48 E-value=2e-13 Score=124.17 Aligned_cols=125 Identities=26% Similarity=0.292 Sum_probs=60.6
Q ss_pred CCCcEEEccCCCCC--CCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEEEccCCCCCCC-Cc-ccCCCCCccEE
Q 005708 58 PKLQALFLQENSPL--AIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLRTLSLHDCRRFGD-LP-LIGELSLLEIL 133 (681)
Q Consensus 58 ~~Lr~L~l~~~~~~--~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~-l~-~l~~L~~L~~L 133 (681)
++|++|++++|.+. .+|.. |..+++|++|++++|.+..+ ..++.+++|++|++++|. +.. +| .++++++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENR-IFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCC-CCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCc-CchHHHHHHhhCCCCCEE
Confidence 45555555555555 44443 35555555555555555444 445555555555555555 222 44 33345555555
Q ss_pred EcccCCCcccc--hhhcCCccCcEEeccCCCCCCccCh---hhhcCCCCCcEEEcccC
Q 005708 134 DLSESDVSEIP--VSFGRLGHLRLLDLTDCVHLELIPR---DVLSSLRKLEELYMSHS 186 (681)
Q Consensus 134 ~l~~~~i~~lp--~~i~~l~~L~~L~L~~~~~~~~~~~---~~l~~l~~L~~L~l~~~ 186 (681)
++++|.++.+| ..+..+++|++|++++|.. ..+|. ..+..+++|++|++++|
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEV-TNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGG-GTSTTHHHHHHTTCSSCCEETTEET
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcC-cchHHHHHHHHHhCccCcEecCCCC
Confidence 55555555443 3445555555555555322 22332 22444444444444443
No 119
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.48 E-value=6.6e-14 Score=124.50 Aligned_cols=120 Identities=24% Similarity=0.221 Sum_probs=62.1
Q ss_pred CCccEEEccCCCCc--cCCCCC-CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCC-CCccccCCCCCcEEE
Q 005708 36 EDLTGISLMFNDIH--EVPDEL-ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFS-LPSSLSFLINLRTLS 111 (681)
Q Consensus 36 ~~lr~L~l~~~~~~--~l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~-lp~~i~~l~~L~~L~ 111 (681)
+++++|++++|.+. .++... .+++|++|++++|.+..+ ..|+.+++|++|++++|.+.. +|..++.+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45566666666655 455443 555555555555555554 224555555555555555543 444444455555555
Q ss_pred ccCCCCCCCC---cccCCCCCccEEEcccCCCcccch----hhcCCccCcEEec
Q 005708 112 LHDCRRFGDL---PLIGELSLLEILDLSESDVSEIPV----SFGRLGHLRLLDL 158 (681)
Q Consensus 112 L~~~~~~~~l---~~l~~L~~L~~L~l~~~~i~~lp~----~i~~l~~L~~L~L 158 (681)
+++|. ++.+ +.++++++|++|++++|.++.+|. .++.+++|++|++
T Consensus 95 ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 95 LSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 55555 4433 144555555555555555544443 3444555555544
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.47 E-value=2e-16 Score=172.16 Aligned_cols=192 Identities=23% Similarity=0.249 Sum_probs=134.1
Q ss_pred CCCCCccEEEccCCCCccCCCCC-CCCCCcEEEccCCC-------------CCCCChHHHhCCCCccEEE-ecCCCCCCC
Q 005708 33 NTFEDLTGISLMFNDIHEVPDEL-ECPKLQALFLQENS-------------PLAIPDRFFQGMKDLKVLD-LGGIRGFSL 97 (681)
Q Consensus 33 ~~l~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~-------------~~~l~~~~~~~l~~Lr~L~-L~~~~~~~l 97 (681)
...+.+++|++++|.++.+|..+ .+++|+.|++++|. ....++..++.+++|+.|+ ++.+.+..+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 44567777888888887777766 67778887776553 2333444456777777776 444433222
Q ss_pred Cc------cccC--CCCCcEEEccCCCCCCCCcccCCCCCccEEEcccCCCcccchhhcCCccCcEEeccCCCCCCccCh
Q 005708 98 PS------SLSF--LINLRTLSLHDCRRFGDLPLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPR 169 (681)
Q Consensus 98 p~------~i~~--l~~L~~L~L~~~~~~~~l~~l~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~ 169 (681)
+. .+.. ...|++|++++|. ++.+|.++++++|++|++++|.++.+|..++++++|++|++++|. +..+|
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp- 502 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD- 502 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSC-CSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-
T ss_pred hhhhhhcccccccCccCceEEEecCCC-CCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-
Confidence 11 1111 1258888888887 777888888888888888888888888888888888888888854 45577
Q ss_pred hhhcCCCCCcEEEcccCcccccccchhhhhhccc-hhhhcCCCCCcEEEEeCCCCCCCCCC-----CCCCCccEEE
Q 005708 170 DVLSSLRKLEELYMSHSFCHWQFESEEDARSNAK-FIELGALSRLTSLHIDIPKGKIMPSD-----MSFQNLTSFS 239 (681)
Q Consensus 170 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~-----~~l~~L~~L~ 239 (681)
. ++++++|+.|++++|.+. + .. +..++.+++|+.|++++|.+...|+. ..+++|+.|+
T Consensus 503 ~-l~~l~~L~~L~Ls~N~l~----~-------~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 503 G-VANLPRLQELLLCNNRLQ----Q-------SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp G-GTTCSSCCEEECCSSCCC----S-------SSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred c-cCCCCCCcEEECCCCCCC----C-------CCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 3 788888888888888542 1 22 67788888888888888888766554 2356666664
No 121
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.45 E-value=7.4e-14 Score=128.00 Aligned_cols=127 Identities=16% Similarity=0.124 Sum_probs=60.7
Q ss_pred CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEEEccCCCCCCCCc-c-cCCCCCccEE
Q 005708 56 ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLP-L-IGELSLLEIL 133 (681)
Q Consensus 56 ~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~-~-l~~L~~L~~L 133 (681)
.+++|+.|++++|.+..++. +....++|++|++++|.+..+ ..++.+++|++|++++|. ++.+| . ++++++|++|
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEE
T ss_pred CcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCCCEE
Confidence 34444444444444444432 112222555555555555444 344455555555555554 33443 2 2455555555
Q ss_pred EcccCCCcccch--hhcCCccCcEEeccCCCCCCccChh---hhcCCCCCcEEEcccC
Q 005708 134 DLSESDVSEIPV--SFGRLGHLRLLDLTDCVHLELIPRD---VLSSLRKLEELYMSHS 186 (681)
Q Consensus 134 ~l~~~~i~~lp~--~i~~l~~L~~L~L~~~~~~~~~~~~---~l~~l~~L~~L~l~~~ 186 (681)
++++|.++.+|. .+..+++|++|++++|.. ..+|.. .+..+++|+.|+++.+
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeCCCcC
Confidence 555555555554 455555555555555332 233332 2455556666655554
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.45 E-value=4.6e-13 Score=124.47 Aligned_cols=126 Identities=21% Similarity=0.300 Sum_probs=91.2
Q ss_pred cEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChH-HHhCCCCccEEEecCCCCCCC-CccccCCCCCcEEEccCCC
Q 005708 39 TGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDR-FFQGMKDLKVLDLGGIRGFSL-PSSLSFLINLRTLSLHDCR 116 (681)
Q Consensus 39 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~-~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~ 116 (681)
+.++++++.++.+|.... ++|++|++++|.+..++.. +|+.+++|++|++++|++..+ |..++++++|++|++++|.
T Consensus 11 ~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 577788888877776552 3788888888887777653 467788888888888887555 6677778888888888877
Q ss_pred CCCCCc--ccCCCCCccEEEcccCCCccc-chhhcCCccCcEEeccCCCCCCc
Q 005708 117 RFGDLP--LIGELSLLEILDLSESDVSEI-PVSFGRLGHLRLLDLTDCVHLEL 166 (681)
Q Consensus 117 ~~~~l~--~l~~L~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~ 166 (681)
++.++ .++++++|++|++++|.++.+ |..+..+++|++|++++|.....
T Consensus 90 -l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 90 -IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp -CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred -CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 55554 477777888888888777755 55677777777777777655443
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.45 E-value=1.3e-13 Score=122.62 Aligned_cols=122 Identities=23% Similarity=0.324 Sum_probs=60.7
Q ss_pred CCCcEEEccCCCCC--CCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEEEccCCCCCCC-Cc-ccCCCCCccEE
Q 005708 58 PKLQALFLQENSPL--AIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLRTLSLHDCRRFGD-LP-LIGELSLLEIL 133 (681)
Q Consensus 58 ~~Lr~L~l~~~~~~--~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~-l~-~l~~L~~L~~L 133 (681)
++|+.|++++|.+. .+|.. |..+++|++|++++|.+..+ ..++.+++|++|++++|. ++. +| .++++++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNR-VSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSC-CCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCc-ccchHHHHhhhCCCCCEE
Confidence 45555555555555 44432 35555555555555555444 445555555555555555 332 44 33445555555
Q ss_pred EcccCCCcccc--hhhcCCccCcEEeccCCCCCCccCh---hhhcCCCCCcEEEc
Q 005708 134 DLSESDVSEIP--VSFGRLGHLRLLDLTDCVHLELIPR---DVLSSLRKLEELYM 183 (681)
Q Consensus 134 ~l~~~~i~~lp--~~i~~l~~L~~L~L~~~~~~~~~~~---~~l~~l~~L~~L~l 183 (681)
++++|.++.+| ..++.+++|++|++++|. +..++. ..+..+++|+.|++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETT
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccC
Confidence 55555555443 445555555555555533 223332 22444555555544
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.43 E-value=7.6e-13 Score=122.96 Aligned_cols=120 Identities=26% Similarity=0.352 Sum_probs=62.0
Q ss_pred cEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCC-ccccCCCCCcEEEccCCCC
Q 005708 39 TGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLP-SSLSFLINLRTLSLHDCRR 117 (681)
Q Consensus 39 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~~ 117 (681)
+.++++++.+..+|... .++|++|++++|.+..+|. .|..+++|++|++++|.+..++ ..|.++++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~- 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR- 89 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-
Confidence 34555555555555433 2455555555555555553 2455555555555555554443 335555555555555555
Q ss_pred CCCCc--ccCCCCCccEEEcccCCCcccchh-hcCCccCcEEeccCC
Q 005708 118 FGDLP--LIGELSLLEILDLSESDVSEIPVS-FGRLGHLRLLDLTDC 161 (681)
Q Consensus 118 ~~~l~--~l~~L~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~ 161 (681)
++.++ .++++++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 33333 355555555555555555544442 444455555555443
No 125
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.42 E-value=1.5e-12 Score=119.38 Aligned_cols=127 Identities=25% Similarity=0.324 Sum_probs=90.4
Q ss_pred ccEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCcc-ccCCCCCcEEEccCCC
Q 005708 38 LTGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSS-LSFLINLRTLSLHDCR 116 (681)
Q Consensus 38 lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~-i~~l~~L~~L~L~~~~ 116 (681)
.+.++++++.+..+|... .++|++|++++|.+..++...|+.+++|++|++++|.+..+|.. ++++++|++|++++|.
T Consensus 9 ~~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TTEEECCSSCCSSCCTTC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEecCCCCccCCCCC-CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 356777777777776443 36788888888887777776677788888888888877666544 5777778888887777
Q ss_pred CCCCCc--ccCCCCCccEEEcccCCCcccchh-hcCCccCcEEeccCCCCCCc
Q 005708 117 RFGDLP--LIGELSLLEILDLSESDVSEIPVS-FGRLGHLRLLDLTDCVHLEL 166 (681)
Q Consensus 117 ~~~~l~--~l~~L~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~ 166 (681)
++.+| .++++++|++|++++|.++.+|.. +..+++|++|++++|.....
T Consensus 88 -l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 88 -LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp -CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred -ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 55555 467777777777777777777664 46677777777777654433
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.42 E-value=1.8e-12 Score=120.42 Aligned_cols=123 Identities=24% Similarity=0.320 Sum_probs=109.9
Q ss_pred cEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEEEccCCCCCCCCc--ccCCCCCccEEEcccC
Q 005708 61 QALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSES 138 (681)
Q Consensus 61 r~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~--~l~~L~~L~~L~l~~~ 138 (681)
++++++++.+..+|..+ .++|++|++++|.+..+|..+.++++|++|++++|. ++.++ .+.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCC
Confidence 68999999999999764 368999999999999999999999999999999999 77775 6999999999999999
Q ss_pred CCcccch-hhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcc
Q 005708 139 DVSEIPV-SFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFC 188 (681)
Q Consensus 139 ~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 188 (681)
.++.+|. .|..+++|++|++++| .+..+|...+..+++|+.|++++|..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCe
Confidence 9998865 6999999999999995 56678877688999999999999865
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.41 E-value=1.2e-13 Score=126.63 Aligned_cols=130 Identities=17% Similarity=0.144 Sum_probs=93.5
Q ss_pred CCCCCCCCccEEEccCCCCccCCCCCCC-CCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccc-cCCCCC
Q 005708 30 PSINTFEDLTGISLMFNDIHEVPDELEC-PKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSL-SFLINL 107 (681)
Q Consensus 30 ~~~~~l~~lr~L~l~~~~~~~l~~~~~~-~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i-~~l~~L 107 (681)
+.+..+.+++.|++++|.+..++....+ ++|++|++++|.+..++ .|..+++|++|++++|.+..+|..+ +.+++|
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred HhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCccc--ccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 4455667777888888777777554443 37888888888777663 2677778888888888777776544 777788
Q ss_pred cEEEccCCCCCCCCc---ccCCCCCccEEEcccCCCcccchh----hcCCccCcEEeccCCC
Q 005708 108 RTLSLHDCRRFGDLP---LIGELSLLEILDLSESDVSEIPVS----FGRLGHLRLLDLTDCV 162 (681)
Q Consensus 108 ~~L~L~~~~~~~~l~---~l~~L~~L~~L~l~~~~i~~lp~~----i~~l~~L~~L~L~~~~ 162 (681)
++|++++|. ++.+| .++++++|++|++++|.+..+|.. +..+++|++|++++|.
T Consensus 91 ~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 91 TELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 888888777 56665 467777788888888777777764 7777788888777754
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.40 E-value=3.3e-13 Score=151.54 Aligned_cols=150 Identities=23% Similarity=0.286 Sum_probs=82.9
Q ss_pred CCccEEEccCCCCccCCCCC-CCCCCcEEEc-----cCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcE
Q 005708 36 EDLTGISLMFNDIHEVPDEL-ECPKLQALFL-----QENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLRT 109 (681)
Q Consensus 36 ~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l-----~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~ 109 (681)
+.++.|++..+.+..++... ...+|+.+.+ ..|.+. ++.+.|..+++|++|+|++|.+..+|..+.++++|++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR 251 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence 45677777777776554333 3333333333 223333 3445567778888888888888777777777888888
Q ss_pred EEccCCCCCCCCc-ccCCCCCccEEEcccCCCcccchhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcc
Q 005708 110 LSLHDCRRFGDLP-LIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFC 188 (681)
Q Consensus 110 L~L~~~~~~~~l~-~l~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 188 (681)
|+|++|. ++.+| .+++|++|++|+|++|.++.+|..|++|++|++|+|++| .++.+|.. |+++++|+.|++++|.+
T Consensus 252 L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 252 LYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDN-MVTTLPWE-FGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp CBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSS-CCCCCCSS-TTSCTTCCCEECTTSCC
T ss_pred EEeeCCc-CcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCC-CCCccChh-hhcCCCccEEeCCCCcc
Confidence 8888877 55777 677888888888888888877877888888888888875 45577776 77788888888877765
Q ss_pred c
Q 005708 189 H 189 (681)
Q Consensus 189 ~ 189 (681)
.
T Consensus 329 ~ 329 (727)
T 4b8c_D 329 E 329 (727)
T ss_dssp C
T ss_pred C
Confidence 4
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.39 E-value=5.2e-13 Score=149.97 Aligned_cols=129 Identities=24% Similarity=0.270 Sum_probs=111.6
Q ss_pred CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEEEccCCCCCCCCc-ccCCCCCccEEE
Q 005708 56 ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILD 134 (681)
Q Consensus 56 ~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~-~l~~L~~L~~L~ 134 (681)
.+++|+.|++++|.+..++..+| .+++|++|+|++|.+..+|..|+++++|++|+|++|. ++.+| .+++|++|++|+
T Consensus 222 ~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFY 299 (727)
T ss_dssp CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEE
T ss_pred cCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEE
Confidence 78999999999999999998875 8999999999999999999999999999999999999 77888 899999999999
Q ss_pred cccCCCcccchhhcCCccCcEEeccCCCCCCccChhhhcCCCC-CcEEEcccCc
Q 005708 135 LSESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRK-LEELYMSHSF 187 (681)
Q Consensus 135 l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~ 187 (681)
|++|.++.+|..|+++++|++|+|++|...+.+|.. +..+.. +..|++++|.
T Consensus 300 L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~~~~~~~~l~l~~N~ 352 (727)
T 4b8c_D 300 FFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKI-LTEKSVTGLIFYLRDNR 352 (727)
T ss_dssp CCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHH-HHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCccChhhhcCCCccEEeCCCCccCCCChHH-HhhcchhhhHHhhccCc
Confidence 999999999999999999999999997765555544 443321 2235566664
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.38 E-value=1.6e-12 Score=120.86 Aligned_cols=123 Identities=20% Similarity=0.177 Sum_probs=96.1
Q ss_pred cEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCcc--ccCCCCCcEEEccCCCCCCCC-c-ccCCCCCccEEEcc
Q 005708 61 QALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSS--LSFLINLRTLSLHDCRRFGDL-P-LIGELSLLEILDLS 136 (681)
Q Consensus 61 r~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~--i~~l~~L~~L~L~~~~~~~~l-~-~l~~L~~L~~L~l~ 136 (681)
++++++++.+..+|..++ .+|++|++++|++..++.. ++.+++|++|++++|. ++.+ | .++++++|++|+++
T Consensus 11 ~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcCcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEECC
Confidence 688889998888887543 3888999999988777653 7888999999999888 5555 4 78888999999999
Q ss_pred cCCCcccch-hhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcc
Q 005708 137 ESDVSEIPV-SFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFC 188 (681)
Q Consensus 137 ~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 188 (681)
+|.++.++. .+..+++|++|++++|... .+++..+..+++|++|++++|..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCC-EECTTSSTTCTTCCEEECTTCCB
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCC-eeCHHHhhcCCCCCEEEeCCCCc
Confidence 988887755 4788888888888885544 44333377888888888887754
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.32 E-value=1.4e-11 Score=112.93 Aligned_cols=124 Identities=23% Similarity=0.380 Sum_probs=101.8
Q ss_pred CcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCc-cccCCCCCcEEEccCCCCCCCCc--ccCCCCCccEEEcc
Q 005708 60 LQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPS-SLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLS 136 (681)
Q Consensus 60 Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~~l~--~l~~L~~L~~L~l~ 136 (681)
.+.++++++.+..+|..+ .++|++|++++|++..+|. .++.+++|++|++++|. ++.+| .++++++|++|+++
T Consensus 9 ~~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCSSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECC
Confidence 467889999999888653 4789999999999977765 46889999999999998 67776 47899999999999
Q ss_pred cCCCcccchh-hcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcc
Q 005708 137 ESDVSEIPVS-FGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFC 188 (681)
Q Consensus 137 ~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 188 (681)
+|.++.+|.. +..+++|++|++++| .+..+|...+.++++|++|++++|..
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCe
Confidence 9999888764 688999999999985 45577776567888899998888864
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.32 E-value=5.9e-12 Score=136.91 Aligned_cols=122 Identities=23% Similarity=0.216 Sum_probs=82.9
Q ss_pred CccEEEecCCCCCCCCccccCCCCCcEEEccCCCCCCCCc-ccCCCCCccEEEcccCCCcccchhhcCCccCcEEeccCC
Q 005708 83 DLKVLDLGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDC 161 (681)
Q Consensus 83 ~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~-~l~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~ 161 (681)
.|++|++++|.+..+|. ++++++|++|++++|. ++.+| .++++++|++|++++|.++.+| .++.+++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC
Confidence 47777777777777776 7777777777777777 66776 7777777777777777777777 6777777777777775
Q ss_pred CCCCcc--ChhhhcCCCCCcEEEcccCcccccccchhhhhhccchhhhcCCCCCcEEE
Q 005708 162 VHLELI--PRDVLSSLRKLEELYMSHSFCHWQFESEEDARSNAKFIELGALSRLTSLH 217 (681)
Q Consensus 162 ~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 217 (681)
. +..+ |.. ++++++|+.|++++|.+..... ....-+..+++|+.|+
T Consensus 519 ~-l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~--------~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 519 R-LQQSAAIQP-LVSCPRLVLLNLQGNSLCQEEG--------IQERLAEMLPSVSSIL 566 (567)
T ss_dssp C-CCSSSTTGG-GGGCTTCCEEECTTSGGGGSSS--------CTTHHHHHCTTCSEEE
T ss_pred C-CCCCCCcHH-HhcCCCCCEEEecCCcCCCCcc--------HHHHHHHHCcccCccC
Confidence 4 3344 444 7777777777777775421111 1122234467777765
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.27 E-value=4.6e-14 Score=132.14 Aligned_cols=153 Identities=23% Similarity=0.227 Sum_probs=96.6
Q ss_pred CCcEEEccCC--CCCCCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEEEccCCCCCCCCc-ccCCCCCccEEEc
Q 005708 59 KLQALFLQEN--SPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLP-LIGELSLLEILDL 135 (681)
Q Consensus 59 ~Lr~L~l~~~--~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~-~l~~L~~L~~L~l 135 (681)
.++...+.+. .+..+|.. |..+++|++|++++|.+..+| .++.+++|++|++++|. ++.+| .++.+++|++|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~-~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHH-HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEE
T ss_pred chheeEeccccCcHhhhhHH-HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEEC
Confidence 3444444433 34455553 577778888888877777777 67777788888887777 66676 5566677888888
Q ss_pred ccCCCcccchhhcCCccCcEEeccCCCCCCccCh-hhhcCCCCCcEEEcccCcccccccchhhhhhccchhhhcCCCCCc
Q 005708 136 SESDVSEIPVSFGRLGHLRLLDLTDCVHLELIPR-DVLSSLRKLEELYMSHSFCHWQFESEEDARSNAKFIELGALSRLT 214 (681)
Q Consensus 136 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 214 (681)
++|.++.+| .++.+++|++|++++|. +..++. ..+.++++|++|++++|.+....... ..........+..+++|+
T Consensus 101 ~~N~l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~-~~~~~~~~~~~~~l~~L~ 177 (198)
T 1ds9_A 101 SYNQIASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN-NATSEYRIEVVKRLPNLK 177 (198)
T ss_dssp EEEECCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTT-TTHHHHHHHHHHHCSSCS
T ss_pred cCCcCCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccc-cchHHHHHHHHHhCCCcE
Confidence 888777776 57777888888887744 444443 33677888888888777542110000 000111123367788888
Q ss_pred EEE
Q 005708 215 SLH 217 (681)
Q Consensus 215 ~L~ 217 (681)
.|+
T Consensus 178 ~Ld 180 (198)
T 1ds9_A 178 KLD 180 (198)
T ss_dssp EEC
T ss_pred EEC
Confidence 776
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.26 E-value=1.2e-11 Score=125.63 Aligned_cols=190 Identities=19% Similarity=0.204 Sum_probs=138.3
Q ss_pred CCCccEEEccCCCCc--------------------cCCCCC--C--------CCCCcEEEccCCCCCCCChHHHhCCCCc
Q 005708 35 FEDLTGISLMFNDIH--------------------EVPDEL--E--------CPKLQALFLQENSPLAIPDRFFQGMKDL 84 (681)
Q Consensus 35 l~~lr~L~l~~~~~~--------------------~l~~~~--~--------~~~Lr~L~l~~~~~~~l~~~~~~~l~~L 84 (681)
+++|+.|++++|.+. .++... . +++|+.|.+.. .+..+++..|.++++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 678999999998877 344443 6 89999999988 8888888889999999
Q ss_pred cEEEecCCCCCCC-CccccCCCCCcEEEccCCCC---CCCCc--cc----------------------------------
Q 005708 85 KVLDLGGIRGFSL-PSSLSFLINLRTLSLHDCRR---FGDLP--LI---------------------------------- 124 (681)
Q Consensus 85 r~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~~---~~~l~--~l---------------------------------- 124 (681)
+.|++++|.+..+ +.+|.++.++.++....... ...+. .+
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence 9999999988655 44567777777776654110 00110 00
Q ss_pred ----------------CCCCCccEEEcccCCCcccch-hhcCCccCcEEeccCCCCCCccChhhhcCCCCCc-EEEcccC
Q 005708 125 ----------------GELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLE-ELYMSHS 186 (681)
Q Consensus 125 ----------------~~L~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~-~L~l~~~ 186 (681)
..+++|+.+++++|+++.+|. .|.++++|+.+++.++ +..++...|.++.+|+ .+.+..+
T Consensus 207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~~ 284 (329)
T 3sb4_A 207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPAS 284 (329)
T ss_dssp EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECTT
T ss_pred EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEccc
Confidence 026788888888888888876 4888888999988884 6778877788888888 8888663
Q ss_pred cccccccchhhhhhccchhhhcCCCCCcEEEEeCCCCCCCCCC--CCCCCccEEE
Q 005708 187 FCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKGKIMPSD--MSFQNLTSFS 239 (681)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~ 239 (681)
. ..-...++..+++|+.+++..+.+..++.. ..+++|+.+.
T Consensus 285 l------------~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 285 V------------TAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp C------------CEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred c------------eEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 2 112345788888899888888888777665 5666676653
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.26 E-value=2.1e-11 Score=111.03 Aligned_cols=104 Identities=19% Similarity=0.243 Sum_probs=59.0
Q ss_pred cEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCcc-ccCCCCCcEEEccCCCC
Q 005708 39 TGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSS-LSFLINLRTLSLHDCRR 117 (681)
Q Consensus 39 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~-i~~l~~L~~L~L~~~~~ 117 (681)
+.++++++.+..+|..+. ++|++|++++|.+..+++..|.++++|++|+|++|++..+|.. ++++++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~- 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP-TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH- 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-
T ss_pred cEEEeCCCCCCccCCCcC-CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc-
Confidence 456666666666655443 5666666666666655554556666666666666666555543 3555666666666555
Q ss_pred CCCCc--ccCCCCCccEEEcccCCCcccc
Q 005708 118 FGDLP--LIGELSLLEILDLSESDVSEIP 144 (681)
Q Consensus 118 ~~~l~--~l~~L~~L~~L~l~~~~i~~lp 144 (681)
++.+| .++++++|++|++++|.+...|
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred cceeCHHHhccccCCCEEEeCCCCccccc
Confidence 44444 3555555555555555555443
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.25 E-value=4.8e-13 Score=125.13 Aligned_cols=143 Identities=20% Similarity=0.185 Sum_probs=109.8
Q ss_pred CccEEEccCC--CCccCCCCC-CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEEEcc
Q 005708 37 DLTGISLMFN--DIHEVPDEL-ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLRTLSLH 113 (681)
Q Consensus 37 ~lr~L~l~~~--~~~~l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~ 113 (681)
.++...+.+. .++.++..+ .+++|++|++++|.+..+| .|..+++|++|++++|.+..+|..+..+++|++|+++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECc
Confidence 3455555543 344444444 7888999999998888887 3688899999999999888888888888889999999
Q ss_pred CCCCCCCCcccCCCCCccEEEcccCCCcccch--hhcCCccCcEEeccCCCCCCccC---------hhhhcCCCCCcEEE
Q 005708 114 DCRRFGDLPLIGELSLLEILDLSESDVSEIPV--SFGRLGHLRLLDLTDCVHLELIP---------RDVLSSLRKLEELY 182 (681)
Q Consensus 114 ~~~~~~~l~~l~~L~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~L~~~~~~~~~~---------~~~l~~l~~L~~L~ 182 (681)
+|. ++.+|.++++++|++|++++|.++.+|. .+..+++|++|++++|......| ...+..+++|+.|+
T Consensus 102 ~N~-l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 102 YNQ-IASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEE-CCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCc-CCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 887 7778888888899999999988887764 68888999999998875433322 23367888888887
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.21 E-value=9.6e-11 Score=106.24 Aligned_cols=101 Identities=24% Similarity=0.322 Sum_probs=55.6
Q ss_pred cEEEccCCCCccCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCCcc-ccCCCCCcEEEccCCCC
Q 005708 39 TGISLMFNDIHEVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLPSS-LSFLINLRTLSLHDCRR 117 (681)
Q Consensus 39 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~-i~~l~~L~~L~L~~~~~ 117 (681)
+.++++++.+..+|.... ++|++|++++|.+..+++..|.++++|++|+|++|++..+|.. +.++++|++|++++|.
T Consensus 12 ~~l~~s~n~l~~ip~~~~-~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~- 89 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP-TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ- 89 (170)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-
T ss_pred CEEEeCCCCcCccCccCC-CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc-
Confidence 456666666665554442 5566666666666655544455666666666666665555433 3555555555555555
Q ss_pred CCCCc--ccCCCCCccEEEcccCCCc
Q 005708 118 FGDLP--LIGELSLLEILDLSESDVS 141 (681)
Q Consensus 118 ~~~l~--~l~~L~~L~~L~l~~~~i~ 141 (681)
++.+| .+.++++|++|++++|.+.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 44443 3555555555555555443
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.18 E-value=8e-11 Score=107.14 Aligned_cols=98 Identities=23% Similarity=0.342 Sum_probs=71.2
Q ss_pred cEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCC-CccccCCCCCcEEEccCCCCCCCCc--ccCCCCCccEEEccc
Q 005708 61 QALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSL-PSSLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSE 137 (681)
Q Consensus 61 r~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~~l~--~l~~L~~L~~L~l~~ 137 (681)
+.++++++.+..+|..+ .++|++|++++|++..+ |..++++++|++|++++|. ++.+| .++++++|++|++++
T Consensus 15 ~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCC
Confidence 67777888777777654 26777888888877665 5567777778888887777 66665 357777777777777
Q ss_pred CCCcccchh-hcCCccCcEEeccCCC
Q 005708 138 SDVSEIPVS-FGRLGHLRLLDLTDCV 162 (681)
Q Consensus 138 ~~i~~lp~~-i~~l~~L~~L~L~~~~ 162 (681)
|.++.+|.. +..+++|++|++++|.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CccceeCHHHhccccCCCEEEeCCCC
Confidence 777777664 6777777777777754
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.17 E-value=1.2e-10 Score=105.69 Aligned_cols=100 Identities=23% Similarity=0.275 Sum_probs=68.3
Q ss_pred CcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCC-CccccCCCCCcEEEccCCCCCCCCc--ccCCCCCccEEEcc
Q 005708 60 LQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSL-PSSLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLS 136 (681)
Q Consensus 60 Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~~l~--~l~~L~~L~~L~l~ 136 (681)
.++++++++.+..+|..+ .++|++|++++|++..+ |..++++++|++|++++|. ++.+| .+.++++|++|+++
T Consensus 11 ~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECC
Confidence 456777777777777643 36677777777777655 5556777777777777776 55555 45677777777777
Q ss_pred cCCCcccchh-hcCCccCcEEeccCCCC
Q 005708 137 ESDVSEIPVS-FGRLGHLRLLDLTDCVH 163 (681)
Q Consensus 137 ~~~i~~lp~~-i~~l~~L~~L~L~~~~~ 163 (681)
+|.++.+|.. +..+++|++|++++|..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 7777766653 66677777777777543
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.95 E-value=1.2e-09 Score=110.91 Aligned_cols=167 Identities=14% Similarity=0.162 Sum_probs=133.4
Q ss_pred CCCccEEEccCCCCccCCCCC--CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCC----CCCC-ccc------
Q 005708 35 FEDLTGISLMFNDIHEVPDEL--ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRG----FSLP-SSL------ 101 (681)
Q Consensus 35 l~~lr~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~----~~lp-~~i------ 101 (681)
+.+|+.+.+.. .+..+++.. .|++|+.|++.+|.+..+++..|..+.++..+.+..... ..+. .++
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 89999999998 888887765 899999999999999999988899988888777665211 0000 000
Q ss_pred --------------------------------------------cCCCCCcEEEccCCCCCCCCc--ccCCCCCccEEEc
Q 005708 102 --------------------------------------------SFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDL 135 (681)
Q Consensus 102 --------------------------------------------~~l~~L~~L~L~~~~~~~~l~--~l~~L~~L~~L~l 135 (681)
..+.+|+.+++++|. ++.+| .|.++.+|+.+++
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEEC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEEC
Confidence 037899999999988 88887 8999999999999
Q ss_pred ccCCCcccch-hhcCCccCc-EEeccCCCCCCccChhhhcCCCCCcEEEcccCcccccccchhhhhhccchhhhcCCCCC
Q 005708 136 SESDVSEIPV-SFGRLGHLR-LLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHWQFESEEDARSNAKFIELGALSRL 213 (681)
Q Consensus 136 ~~~~i~~lp~-~i~~l~~L~-~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 213 (681)
.++ ++.++. .|.++.+|+ .+.+.+ .+..++...|.++.+|+.+++..+.+. .-....+..+++|
T Consensus 258 ~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~-----------~I~~~aF~~~~~L 323 (329)
T 3sb4_A 258 PHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKIT-----------TLGDELFGNGVPS 323 (329)
T ss_dssp CTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCC-----------EECTTTTCTTCCC
T ss_pred Ccc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccC-----------ccchhhhcCCcch
Confidence 997 888865 689999999 999988 467888777999999999999776431 1234578899999
Q ss_pred cEEE
Q 005708 214 TSLH 217 (681)
Q Consensus 214 ~~L~ 217 (681)
+.++
T Consensus 324 ~~ly 327 (329)
T 3sb4_A 324 KLIY 327 (329)
T ss_dssp CEEE
T ss_pred hhhc
Confidence 9886
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.87 E-value=4e-10 Score=115.83 Aligned_cols=159 Identities=16% Similarity=0.090 Sum_probs=107.4
Q ss_pred CCCCcEEEccCCCCCCCChHHHhC-----CCCccEEEecCCCCCC--CCccccCCCCCcEEEccCCCCCCCCc--cc---
Q 005708 57 CPKLQALFLQENSPLAIPDRFFQG-----MKDLKVLDLGGIRGFS--LPSSLSFLINLRTLSLHDCRRFGDLP--LI--- 124 (681)
Q Consensus 57 ~~~Lr~L~l~~~~~~~l~~~~~~~-----l~~Lr~L~L~~~~~~~--lp~~i~~l~~L~~L~L~~~~~~~~l~--~l--- 124 (681)
.++|++|++++|.+.......+.. .++|++|+|++|.++. +..-...+.+|++|++++|. +++.+ .+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHH
Confidence 467888899888877443332332 3688999999888743 12222345678899999887 55443 22
Q ss_pred --CCCCCccEEEcccCCCcc-----cchhhcCCccCcEEeccCCCCCCccC----hhhhcCCCCCcEEEcccCccccccc
Q 005708 125 --GELSLLEILDLSESDVSE-----IPVSFGRLGHLRLLDLTDCVHLELIP----RDVLSSLRKLEELYMSHSFCHWQFE 193 (681)
Q Consensus 125 --~~L~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~L~~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~ 193 (681)
...++|++|++++|.++. ++..+..+++|++|+|++|. ++... ...+...++|++|++++|.+...
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~-- 226 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDT-- 226 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH--
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH--
Confidence 356789999999988863 55666788889999998865 33322 12256778899999988864211
Q ss_pred chhhhhhccchhhhcCCCCCcEEEEeCCCCC
Q 005708 194 SEEDARSNAKFIELGALSRLTSLHIDIPKGK 224 (681)
Q Consensus 194 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 224 (681)
........+...++|++|++++|.+.
T Consensus 227 -----g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 227 -----AALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp -----HHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred -----HHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 12245566777888999999888764
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.86 E-value=3.5e-08 Score=102.29 Aligned_cols=188 Identities=14% Similarity=0.118 Sum_probs=108.8
Q ss_pred CccEEEccCCCCccCCCCC--CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCC-ccccCCCCCcEEEcc
Q 005708 37 DLTGISLMFNDIHEVPDEL--ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLP-SSLSFLINLRTLSLH 113 (681)
Q Consensus 37 ~lr~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~ 113 (681)
+|+.+.+.. .+..+.... .|++|+.+++.+|.+..++...|. +.+|+.+.+..+ +..++ .+|.++.+|+.+.+.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence 577777764 555565443 677777777777777777777776 467777777643 54443 456677777777776
Q ss_pred CCCCCCCCc--ccCCCCCccEEEcccCCCcccc-hhhcCCccCcEEeccCCCCC----CccChhhhcCCCCCcEEEcccC
Q 005708 114 DCRRFGDLP--LIGELSLLEILDLSESDVSEIP-VSFGRLGHLRLLDLTDCVHL----ELIPRDVLSSLRKLEELYMSHS 186 (681)
Q Consensus 114 ~~~~~~~l~--~l~~L~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~----~~~~~~~l~~l~~L~~L~l~~~ 186 (681)
.+ ++.++ +|.+ .+|+.+.+. +.++.++ ..|.++++|+.+.+.++... ..++...|.++.+|+.+.+..+
T Consensus 235 ~~--l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~ 310 (401)
T 4fdw_A 235 EN--VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES 310 (401)
T ss_dssp TT--CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT
T ss_pred CC--ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc
Confidence 53 44454 4555 566666663 3455553 34666666776666653211 1355555666666666666543
Q ss_pred cccccccchhhhhhccchhhhcCCCCCcEEEEeCCCCCCCCCC--CCCCCccEEEEEecCC
Q 005708 187 FCHWQFESEEDARSNAKFIELGALSRLTSLHIDIPKGKIMPSD--MSFQNLTSFSIKIGDL 245 (681)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~~~~~ 245 (681)
.. .-....+..+++|+.+.+..+ +..+... ..+ +|+.+.+..+..
T Consensus 311 i~------------~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 311 IR------------ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp CC------------EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred eE------------EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 10 112234566666666666433 3333333 344 666666655443
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.86 E-value=6.3e-08 Score=100.43 Aligned_cols=183 Identities=15% Similarity=0.206 Sum_probs=116.4
Q ss_pred CCccEEEccCCCCccCCCCC-CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCC-ccccCCCCCcEEEcc
Q 005708 36 EDLTGISLMFNDIHEVPDEL-ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLP-SSLSFLINLRTLSLH 113 (681)
Q Consensus 36 ~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~ 113 (681)
..++.+.+. +.++.|+... .-.+|+.+.+..+ +..++...|.++ +|+.+.+.. .+..++ .+|.+|.+|+.+++.
T Consensus 113 ~~l~~i~ip-~~i~~I~~~aF~~~~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~ 188 (401)
T 4fdw_A 113 KGYNEIILP-NSVKSIPKDAFRNSQIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLS 188 (401)
T ss_dssp SSCSEEECC-TTCCEECTTTTTTCCCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECT
T ss_pred CCccEEEEC-CccCEehHhhcccCCccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecC
Confidence 445555554 3455555443 2236888887655 667777777774 588888875 555553 567788888888887
Q ss_pred CCCCCCCCc--ccCCCCCccEEEcccCCCcccch-hhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcccc
Q 005708 114 DCRRFGDLP--LIGELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHW 190 (681)
Q Consensus 114 ~~~~~~~l~--~l~~L~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 190 (681)
++. ++.++ .+. ..+|+.+.+.. .++.++. .|.++++|+.+.+..+ +..++...|.+ .+|+.+.+..+..
T Consensus 189 ~n~-l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~i~-- 260 (401)
T 4fdw_A 189 KTK-ITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNGVT-- 260 (401)
T ss_dssp TSC-CSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETTCC--
T ss_pred CCc-ceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCCcc--
Confidence 776 66666 444 57788888874 3666644 5777888888888762 45666665666 6788888754421
Q ss_pred cccchhhhhhccchhhhcCCCCCcEEEEeCCCCC-----CCCCC--CCCCCccEEEE
Q 005708 191 QFESEEDARSNAKFIELGALSRLTSLHIDIPKGK-----IMPSD--MSFQNLTSFSI 240 (681)
Q Consensus 191 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~--~~l~~L~~L~l 240 (681)
.-....+..+++|+.+.+.++... .++.. ..+++|+.+.+
T Consensus 261 ----------~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l 307 (401)
T 4fdw_A 261 ----------NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI 307 (401)
T ss_dssp ----------EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECC
T ss_pred ----------EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEe
Confidence 122456777888888888776543 23333 45556665543
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.77 E-value=1.7e-08 Score=103.27 Aligned_cols=98 Identities=19% Similarity=0.253 Sum_probs=50.3
Q ss_pred EEccCC-CCccCCCCC-CCCCCcEEEccC-CCCCCCChHHHhCCCCccEEEecCCCCCCC-CccccCCCCCcEEEccCCC
Q 005708 41 ISLMFN-DIHEVPDEL-ECPKLQALFLQE-NSPLAIPDRFFQGMKDLKVLDLGGIRGFSL-PSSLSFLINLRTLSLHDCR 116 (681)
Q Consensus 41 L~l~~~-~~~~l~~~~-~~~~Lr~L~l~~-~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~ 116 (681)
++++++ .+..+|. + .+++|+.|+|++ |.+..+++..|.++++|++|+|++|++..+ |..|+++++|++|+|++|.
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 455554 5555555 3 455555555553 555555554555555555555555555433 2344555555555555555
Q ss_pred CCCCCc--ccCCCCCccEEEcccCCCc
Q 005708 117 RFGDLP--LIGELSLLEILDLSESDVS 141 (681)
Q Consensus 117 ~~~~l~--~l~~L~~L~~L~l~~~~i~ 141 (681)
++.+| .+..+. |++|++.+|.+.
T Consensus 92 -l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 92 -LESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp -CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred -cceeCHHHcccCC-ceEEEeeCCCcc
Confidence 44443 222222 555555554443
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.76 E-value=1.5e-08 Score=103.65 Aligned_cols=96 Identities=18% Similarity=0.088 Sum_probs=46.8
Q ss_pred EEccCC-CCCCCChHHHhCCCCccEEEecC-CCCCCCC-ccccCCCCCcEEEccCCCCCCCCc--ccCCCCCccEEEccc
Q 005708 63 LFLQEN-SPLAIPDRFFQGMKDLKVLDLGG-IRGFSLP-SSLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSE 137 (681)
Q Consensus 63 L~l~~~-~~~~l~~~~~~~l~~Lr~L~L~~-~~~~~lp-~~i~~l~~L~~L~L~~~~~~~~l~--~l~~L~~L~~L~l~~ 137 (681)
++++++ .+..+|. +..+++|++|+|++ |.+..+| ..|+++.+|++|+|++|. ++.++ .|++|++|++|+|++
T Consensus 13 v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 13 LRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp EECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCS
T ss_pred EEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCC
Confidence 345554 4555554 35555555555553 5554444 345555555555555554 33332 445555555555555
Q ss_pred CCCcccchhhcCCccCcEEeccCC
Q 005708 138 SDVSEIPVSFGRLGHLRLLDLTDC 161 (681)
Q Consensus 138 ~~i~~lp~~i~~l~~L~~L~L~~~ 161 (681)
|.++.+|..+.....|++|++.+|
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSS
T ss_pred CccceeCHHHcccCCceEEEeeCC
Confidence 555555443222222555555443
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.69 E-value=1.3e-09 Score=111.96 Aligned_cols=152 Identities=14% Similarity=0.023 Sum_probs=112.5
Q ss_pred CCCccEEEccCCCCccCC-----CCC--CCCCCcEEEccCCCCCCC-ChHHHhCCCCccEEEecCCCCCCC-----Cccc
Q 005708 35 FEDLTGISLMFNDIHEVP-----DEL--ECPKLQALFLQENSPLAI-PDRFFQGMKDLKVLDLGGIRGFSL-----PSSL 101 (681)
Q Consensus 35 l~~lr~L~l~~~~~~~l~-----~~~--~~~~Lr~L~l~~~~~~~l-~~~~~~~l~~Lr~L~L~~~~~~~l-----p~~i 101 (681)
++.++.|++++|.++... ... ..++|++|++++|.+... ...++..+++|++|+|++|.++.. ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 357899999999986321 111 347999999999998632 233345567899999999998532 2223
Q ss_pred -cCCCCCcEEEccCCCCCCCC-----c-ccCCCCCccEEEcccCCCc-----ccchhhcCCccCcEEeccCCCCCC----
Q 005708 102 -SFLINLRTLSLHDCRRFGDL-----P-LIGELSLLEILDLSESDVS-----EIPVSFGRLGHLRLLDLTDCVHLE---- 165 (681)
Q Consensus 102 -~~l~~L~~L~L~~~~~~~~l-----~-~l~~L~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~~~---- 165 (681)
....+|++|++++|. +++. + .+...++|++|++++|.+. .++..+...++|++|++++|....
T Consensus 151 ~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 256889999999998 6542 2 4578999999999999987 346677888999999999975432
Q ss_pred ccChhhhcCCCCCcEEEcccCcc
Q 005708 166 LIPRDVLSSLRKLEELYMSHSFC 188 (681)
Q Consensus 166 ~~~~~~l~~l~~L~~L~l~~~~~ 188 (681)
.++.. +...++|++|++++|.+
T Consensus 230 ~l~~~-L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 230 ALARA-AREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHH-HHHCSSCCEEECTTSSC
T ss_pred HHHHH-HHhCCCCCEEeccCCCC
Confidence 12222 45678999999999975
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.67 E-value=4.1e-07 Score=94.57 Aligned_cols=56 Identities=14% Similarity=0.233 Sum_probs=31.8
Q ss_pred CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCCC-ccccCCCCCcEEEcc
Q 005708 56 ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSLP-SSLSFLINLRTLSLH 113 (681)
Q Consensus 56 ~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~ 113 (681)
.+.+|+.+.+.. .+..+....|.++.+|+.+++..+ +..++ .++.++..|+.+.+.
T Consensus 69 ~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 69 GCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp TCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred CCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhccc
Confidence 566666666643 355666666666666666666543 43332 345555556555443
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.58 E-value=3e-06 Score=88.03 Aligned_cols=133 Identities=12% Similarity=0.112 Sum_probs=83.7
Q ss_pred CCCCChHHHhCCCCccEEEecCCCCCCCC-ccccCCCCCcEEEccCCCCCCCCc--ccCCCCCccEEEcccCCCcccc-h
Q 005708 70 PLAIPDRFFQGMKDLKVLDLGGIRGFSLP-SSLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSESDVSEIP-V 145 (681)
Q Consensus 70 ~~~l~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~~l~--~l~~L~~L~~L~l~~~~i~~lp-~ 145 (681)
++.|....|.++.+|+.+.+.. .+..++ .+|.+|.+|+.+++..+ ++.++ ++.++.+|+.+.+..+ +..+. .
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc-eeeecce
Confidence 5577777889999999999974 366664 46788999999998754 56665 7888888888766543 33332 2
Q ss_pred hhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcccccccchhhhhhccchhhhcCCCCCcEEEEeCC
Q 005708 146 SFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDIP 221 (681)
Q Consensus 146 ~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 221 (681)
.|..+..+....... ...+....+.++.+|+.+.+..+.. .-....+..+++|+.+.+..+
T Consensus 135 aF~~~~~~~~~~~~~---~~~i~~~aF~~c~~L~~i~l~~~~~------------~I~~~~F~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 135 AFKGCDFKEITIPEG---VTVIGDEAFATCESLEYVSLPDSME------------TLHNGLFSGCGKLKSIKLPRN 195 (394)
T ss_dssp TTTTCCCSEEECCTT---CCEECTTTTTTCTTCCEEECCTTCC------------EECTTTTTTCTTCCBCCCCTT
T ss_pred eeecccccccccCcc---ccccchhhhcccCCCcEEecCCccc------------eeccccccCCCCceEEEcCCC
Confidence 344454443333322 2344444477788888888755421 112234666777776666443
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.50 E-value=5.4e-08 Score=86.66 Aligned_cols=71 Identities=15% Similarity=0.211 Sum_probs=41.6
Q ss_pred CCCCCccEEEEecCCCcceecchhhHh---hhccccEeEEcccccccceeccccccccccCCCCcceeccccceeecccC
Q 005708 510 PSLGNLVSITIRGCGQLRQLFTTSMVK---SLVRLESLEVSSCPTLQEIIMDDDGGVGLQGASTEKITFPSLFIIQLCHL 586 (681)
Q Consensus 510 ~~~~~L~~L~i~~c~~l~~l~~~~~~~---~l~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c 586 (681)
..+++|++|++++|..+++-....+.. ..++|++|+|++|+++++- ++. .+..+++|++|.|++|
T Consensus 82 ~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~--------Gl~----~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 82 EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK--------GII----ALHHFRNLKYLFLSDL 149 (176)
T ss_dssp TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH--------HHH----HGGGCTTCCEEEEESC
T ss_pred cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH--------HHH----HHhcCCCCCEEECCCC
Confidence 366777788888887777642222222 1346777777777777663 111 1223666777777777
Q ss_pred Cccccc
Q 005708 587 DSLACF 592 (681)
Q Consensus 587 ~~L~~~ 592 (681)
+++++.
T Consensus 150 ~~Itd~ 155 (176)
T 3e4g_A 150 PGVKEK 155 (176)
T ss_dssp TTCCCH
T ss_pred CCCCch
Confidence 666653
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.46 E-value=6.1e-08 Score=86.32 Aligned_cols=94 Identities=15% Similarity=0.172 Sum_probs=69.7
Q ss_pred CCccEEEEecCCCcceecchhhHhhhccccEeEEcccccccceeccccccccccCCCCcceeccccceeecccCCccccc
Q 005708 513 GNLVSITIRGCGQLRQLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDDGGVGLQGASTEKITFPSLFIIQLCHLDSLACF 592 (681)
Q Consensus 513 ~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~ 592 (681)
..|++|++++|. +++..- ..+..+++|++|++++|..+++- ++..+.......++|++|+|++|+++++-
T Consensus 61 ~~L~~LDLs~~~-Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~--------gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGF-DHMEGLQYVEKIRLCKCHYIEDG--------CLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp CCEEEEEEESCC-CCGGGG-GGGTTCSCCCEEEEESCTTCCHH--------HHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred ceEeEEeCcCCC-ccHHHH-HHhcCCCCCCEEEeCCCCccCHH--------HHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 469999999997 665422 33578999999999999988774 11100000001358999999999999987
Q ss_pred ccCCcccccccccccEEEeccCCCcee
Q 005708 593 FSAGSHATIEFLALAALLIIDCPSMKT 619 (681)
Q Consensus 593 ~~~~~~~~~~~~sL~~L~i~~C~~L~~ 619 (681)
....+. .+++|++|++++||+++.
T Consensus 131 Gl~~L~---~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 131 GIIALH---HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHGG---GCTTCCEEEEESCTTCCC
T ss_pred HHHHHh---cCCCCCEEECCCCCCCCc
Confidence 655554 589999999999999986
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.40 E-value=3e-07 Score=93.53 Aligned_cols=158 Identities=18% Similarity=0.199 Sum_probs=77.3
Q ss_pred CCCCCcEEEccCCCCC---------CCChHHHhCCCCccEEEecCCCCCCCCccccCCCCCcEEEccCCCCCCCCc--cc
Q 005708 56 ECPKLQALFLQENSPL---------AIPDRFFQGMKDLKVLDLGGIRGFSLPSSLSFLINLRTLSLHDCRRFGDLP--LI 124 (681)
Q Consensus 56 ~~~~Lr~L~l~~~~~~---------~l~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~l~--~l 124 (681)
.+++|+.|.+...... .-...++..+++|+.|+++++....++. +. +.+|++|++..|. +..-. .+
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~-l~~~~l~~l 213 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGG-LPDSVVEDI 213 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSB-CCHHHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCC-CChHHHHHH
Confidence 4567777776543221 0122345667777777777663223333 32 6677777776655 32211 22
Q ss_pred --CCCCCccEEEcccC--C------Ccccchhh--cCCccCcEEeccCCCCCCccChhhh--cCCCCCcEEEcccCcccc
Q 005708 125 --GELSLLEILDLSES--D------VSEIPVSF--GRLGHLRLLDLTDCVHLELIPRDVL--SSLRKLEELYMSHSFCHW 190 (681)
Q Consensus 125 --~~L~~L~~L~l~~~--~------i~~lp~~i--~~l~~L~~L~L~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~ 190 (681)
..+++|++|+|+.+ . +..+...+ ..+++|++|++.+|......+.... ..+++|++|+++.|.+..
T Consensus 214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 25677777776421 1 21222222 2356677777766543322222211 245667777766654311
Q ss_pred cccchhhhhhccchhhhcCCCCCcEEEEeCCCC
Q 005708 191 QFESEEDARSNAKFIELGALSRLTSLHIDIPKG 223 (681)
Q Consensus 191 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 223 (681)
. ........+..+++|+.|+++.|.+
T Consensus 294 ~-------G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 294 E-------GARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp H-------HHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred H-------HHHHHHhhcccCCcceEEECCCCcC
Confidence 0 0112233345556666666665543
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.09 E-value=0.00022 Score=73.88 Aligned_cols=59 Identities=12% Similarity=0.232 Sum_probs=28.1
Q ss_pred ccCccCEEeeccCCCcccccCCCCCcccccccceeeeccCCccccccccccccceeeceeecccc
Q 005708 428 LFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVQDCDELRQVFPTNLGKKAAVEEMVPYRK 492 (681)
Q Consensus 428 ~~~~L~~L~l~~~~~L~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~l~~~~~L~~L~l~~~ 492 (681)
..++|+++.|-+ +++.+... .|.+|.+|+++.|-. +++.+...+|.++.+|+.+++.++
T Consensus 309 ~c~~L~~i~lp~--~v~~I~~~--aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 309 GCISLKSIDIPE--GITQILDD--AFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TCTTCCEEECCT--TCCEECTT--TTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred CCCCcCEEEeCC--cccEehHh--HhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCc
Confidence 344555555532 23344332 234556666666632 244443445555555555555544
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.00 E-value=0.00024 Score=73.50 Aligned_cols=144 Identities=13% Similarity=0.181 Sum_probs=83.4
Q ss_pred CCcEEEccCCCCCCCChHHHhCCCCccEEEecCCC---CCCCC-ccccCCCCCcEEEccCCCCCCCCc--ccCCCCCccE
Q 005708 59 KLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIR---GFSLP-SSLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEI 132 (681)
Q Consensus 59 ~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~---~~~lp-~~i~~l~~L~~L~L~~~~~~~~l~--~l~~L~~L~~ 132 (681)
.|+.+.+... +..+....|.++.+|+.+.+..+. +..+. .+|.++.+|+.+.+..+ ++.++ .+.++.+|+.
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDT 141 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCE
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhccccc
Confidence 4777777543 666777777788888888776553 34442 34666777776666543 44454 6677777777
Q ss_pred EEcccCCCcccc-hhhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccCcccccccchhhhhhccchhhhcCCC
Q 005708 133 LDLSESDVSEIP-VSFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHSFCHWQFESEEDARSNAKFIELGALS 211 (681)
Q Consensus 133 L~l~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 211 (681)
+.+..+ +..++ ..+..+.+|+.+.+... +..+....+. ..+|+.+.+..+.. ......+..+.
T Consensus 142 i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~-~~~l~~i~ip~~~~------------~i~~~af~~c~ 205 (394)
T 4gt6_A 142 VTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFT-GTALTQIHIPAKVT------------RIGTNAFSECF 205 (394)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT-TCCCSEEEECTTCC------------EECTTTTTTCT
T ss_pred ccccce-eeeecccceecccccccccccce--eeEecccccc-ccceeEEEECCccc------------ccccchhhhcc
Confidence 777543 33333 24666777777777552 3445544343 34577766644321 12233455566
Q ss_pred CCcEEEEeCC
Q 005708 212 RLTSLHIDIP 221 (681)
Q Consensus 212 ~L~~L~l~~~ 221 (681)
.+........
T Consensus 206 ~l~~~~~~~~ 215 (394)
T 4gt6_A 206 ALSTITSDSE 215 (394)
T ss_dssp TCCEEEECCS
T ss_pred ccceeccccc
Confidence 6666555443
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.97 E-value=4.4e-06 Score=84.87 Aligned_cols=153 Identities=18% Similarity=0.201 Sum_probs=102.6
Q ss_pred CCCCCCCccEEEccCCCCc----------cCCCCC-CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCC-CC
Q 005708 31 SINTFEDLTGISLMFNDIH----------EVPDEL-ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFS-LP 98 (681)
Q Consensus 31 ~~~~l~~lr~L~l~~~~~~----------~l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~-lp 98 (681)
++..+++|+.|.+...... .+.... .+|+|+.|.+.++.-..++. + .+++|+.|++..+.+.. ..
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~--~-~~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK--K-PRPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS--C-BCTTCSEEEEECSBCCHHHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc--c-cCCCCcEEEEecCCCChHHH
Confidence 3567789999998765332 122222 67999999998885335554 3 38999999999887632 11
Q ss_pred cccc--CCCCCcEEEccCC--CC-----CCCCc-cc--CCCCCccEEEcccCCCcc-cchhh---cCCccCcEEeccCCC
Q 005708 99 SSLS--FLINLRTLSLHDC--RR-----FGDLP-LI--GELSLLEILDLSESDVSE-IPVSF---GRLGHLRLLDLTDCV 162 (681)
Q Consensus 99 ~~i~--~l~~L~~L~L~~~--~~-----~~~l~-~l--~~L~~L~~L~l~~~~i~~-lp~~i---~~l~~L~~L~L~~~~ 162 (681)
..++ .+++|++|+|+.+ .. +..+. .+ ..+++|++|++++|.+.. .+..+ ..+++|++|+|+.|.
T Consensus 211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence 2233 7899999998632 10 11222 22 368999999999998862 22233 358899999998854
Q ss_pred CCCcc-----ChhhhcCCCCCcEEEcccCcc
Q 005708 163 HLELI-----PRDVLSSLRKLEELYMSHSFC 188 (681)
Q Consensus 163 ~~~~~-----~~~~l~~l~~L~~L~l~~~~~ 188 (681)
++.. +.. +..+++|+.|+++.|.+
T Consensus 291 -L~d~G~~~L~~~-L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 291 -LTDEGARLLLDH-VDKIKHLKFINMKYNYL 319 (362)
T ss_dssp -CBHHHHHHHHTT-HHHHTTCSEEECCSBBC
T ss_pred -CChHHHHHHHhh-cccCCcceEEECCCCcC
Confidence 4432 222 35679999999998864
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.96 E-value=3.7e-06 Score=76.84 Aligned_cols=108 Identities=16% Similarity=0.110 Sum_probs=57.4
Q ss_pred HhCCCCccEEEecCC-CCC-----CCCccccCCCCCcEEEccCCCCCCCC-----c-ccCCCCCccEEEcccCCCc----
Q 005708 78 FQGMKDLKVLDLGGI-RGF-----SLPSSLSFLINLRTLSLHDCRRFGDL-----P-LIGELSLLEILDLSESDVS---- 141 (681)
Q Consensus 78 ~~~l~~Lr~L~L~~~-~~~-----~lp~~i~~l~~L~~L~L~~~~~~~~l-----~-~l~~L~~L~~L~l~~~~i~---- 141 (681)
+...+.|++|+|++| .++ .+...+....+|++|+|++|. +++- . .+...++|++|++++|.+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 344555555555555 442 123334445556666666555 3321 1 3334456666666666665
Q ss_pred -ccchhhcCCccCcEEec--cCCCCCCc-----cChhhhcCCCCCcEEEcccCcc
Q 005708 142 -EIPVSFGRLGHLRLLDL--TDCVHLEL-----IPRDVLSSLRKLEELYMSHSFC 188 (681)
Q Consensus 142 -~lp~~i~~l~~L~~L~L--~~~~~~~~-----~~~~~l~~l~~L~~L~l~~~~~ 188 (681)
.+...+...++|++|++ ++|. ++. +.. .+...+.|++|++++|.+
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~-~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIAN-MLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHH-HHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHH-HHHhCCCcCEEeccCCCC
Confidence 24555666667777777 5533 322 122 144556777777777653
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.82 E-value=7.3e-06 Score=74.85 Aligned_cols=103 Identities=15% Similarity=0.113 Sum_probs=47.6
Q ss_pred CCCCcEEEccCC-CCCC-----CChHHHhCCCCccEEEecCCCCCC-----CCccccCCCCCcEEEccCCCCCCCC----
Q 005708 57 CPKLQALFLQEN-SPLA-----IPDRFFQGMKDLKVLDLGGIRGFS-----LPSSLSFLINLRTLSLHDCRRFGDL---- 121 (681)
Q Consensus 57 ~~~Lr~L~l~~~-~~~~-----l~~~~~~~l~~Lr~L~L~~~~~~~-----lp~~i~~l~~L~~L~L~~~~~~~~l---- 121 (681)
.+.|++|++++| .+.. +.. .+...++|++|+|++|.++. +...+....+|++|+|++|. +++-
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~-~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~~~ 112 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAE-ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGILA 112 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHH-HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHH-HHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHHHH
Confidence 455555555555 4431 111 13344555555555555521 23333344455555555555 3331
Q ss_pred -c-ccCCCCCccEEEc--ccCCCc-----ccchhhcCCccCcEEeccCC
Q 005708 122 -P-LIGELSLLEILDL--SESDVS-----EIPVSFGRLGHLRLLDLTDC 161 (681)
Q Consensus 122 -~-~l~~L~~L~~L~l--~~~~i~-----~lp~~i~~l~~L~~L~L~~~ 161 (681)
. .+...++|++|++ ++|.+. .+...+...++|++|++++|
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 1 3444455555555 445544 13333444455555555553
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.74 E-value=2.1e-05 Score=75.54 Aligned_cols=100 Identities=22% Similarity=0.200 Sum_probs=70.8
Q ss_pred CCCcE--EEccCCCCCCCC---hHHHhCCCCccEEEecCCCCCCC---CccccCCCCCcEEEccCCCCCCCCcccCCCC-
Q 005708 58 PKLQA--LFLQENSPLAIP---DRFFQGMKDLKVLDLGGIRGFSL---PSSLSFLINLRTLSLHDCRRFGDLPLIGELS- 128 (681)
Q Consensus 58 ~~Lr~--L~l~~~~~~~l~---~~~~~~l~~Lr~L~L~~~~~~~l---p~~i~~l~~L~~L~L~~~~~~~~l~~l~~L~- 128 (681)
+.|+. ++++.|....++ ..+...+++|+.|+|++|++..+ |..++.+++|++|+|++|. ++.+..+..+.
T Consensus 141 p~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~l~~l~~ 219 (267)
T 3rw6_A 141 PDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKG 219 (267)
T ss_dssp HHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGGGGGGTT
T ss_pred cchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCchhhhhccc
Confidence 34444 555666433222 22236788999999999998654 4666789999999999998 77665444444
Q ss_pred -CccEEEcccCCCc-ccc-------hhhcCCccCcEEec
Q 005708 129 -LLEILDLSESDVS-EIP-------VSFGRLGHLRLLDL 158 (681)
Q Consensus 129 -~L~~L~l~~~~i~-~lp-------~~i~~l~~L~~L~L 158 (681)
+|++|++++|.+. .+| ..+..+++|+.|+=
T Consensus 220 l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 220 LKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp SCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred CCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 8999999999887 344 24678999999863
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.70 E-value=2.9e-05 Score=74.58 Aligned_cols=104 Identities=19% Similarity=0.199 Sum_probs=76.4
Q ss_pred HhCCCCccE--EEecCCCCCCCCcc----ccCCCCCcEEEccCCCCCCCCc----ccCCCCCccEEEcccCCCcccchhh
Q 005708 78 FQGMKDLKV--LDLGGIRGFSLPSS----LSFLINLRTLSLHDCRRFGDLP----LIGELSLLEILDLSESDVSEIPVSF 147 (681)
Q Consensus 78 ~~~l~~Lr~--L~L~~~~~~~lp~~----i~~l~~L~~L~L~~~~~~~~l~----~l~~L~~L~~L~l~~~~i~~lp~~i 147 (681)
|...+.|+. ++++.|....++.. ..++++|+.|+|++|. +..++ .++.+++|++|+|++|.++.+ ..+
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l 214 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSE-REL 214 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccCCc-hhh
Confidence 445555655 56777755444332 2478999999999999 66665 345899999999999999977 345
Q ss_pred cCCc--cCcEEeccCCCCCCccC------hhhhcCCCCCcEEEc
Q 005708 148 GRLG--HLRLLDLTDCVHLELIP------RDVLSSLRKLEELYM 183 (681)
Q Consensus 148 ~~l~--~L~~L~L~~~~~~~~~~------~~~l~~l~~L~~L~l 183 (681)
..+. +|++|++++|+....+| ..++..+++|+.|+-
T Consensus 215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 215 DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 5555 99999999987665554 234788999999884
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.67 E-value=0.0085 Score=61.36 Aligned_cols=125 Identities=19% Similarity=0.190 Sum_probs=95.3
Q ss_pred CCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCCC-CccccCCCCCcEEEccCCCCCCCCc--ccCCCCCccE
Q 005708 56 ECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFSL-PSSLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEI 132 (681)
Q Consensus 56 ~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~~l~--~l~~L~~L~~ 132 (681)
.+.+|+.+.+..+ +..+....|..+..|+.+.+..+ +..+ ..++.++.+|+.+.+... ++.++ .+.++.+|+.
T Consensus 215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCE
T ss_pred cccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceecccccccccccccc
Confidence 6778888887544 55666666888899999998765 5444 345678888999888643 56665 7888999999
Q ss_pred EEcccCCCcccch-hhcCCccCcEEeccCCCCCCccChhhhcCCCCCcEEEcccC
Q 005708 133 LDLSESDVSEIPV-SFGRLGHLRLLDLTDCVHLELIPRDVLSSLRKLEELYMSHS 186 (681)
Q Consensus 133 L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 186 (681)
+.+.++.++.++. .|.++.+|+.+.+... +..++...|.++.+|+.+.+..+
T Consensus 291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 291 VVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEECCc
Confidence 9998888887754 6888899999998652 56777776888999998888654
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.62 E-value=0.012 Score=60.27 Aligned_cols=172 Identities=13% Similarity=0.125 Sum_probs=118.3
Q ss_pred CCCCCCCccEEEccCCCCccCC--------------CCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCCCC
Q 005708 31 SINTFEDLTGISLMFNDIHEVP--------------DELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRGFS 96 (681)
Q Consensus 31 ~~~~l~~lr~L~l~~~~~~~l~--------------~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~ 96 (681)
.+.....+..+.+.......+. .......+..+.+.... ..+....|..+..|+.+.+..+ +..
T Consensus 153 ~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~ 230 (379)
T 4h09_A 153 IGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTT 230 (379)
T ss_dssp TTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCE
T ss_pred hhcccccccccccccccceeecccceecccccceeccccccccccccccccce-eEEeecccccccccceeeeccc-eeE
Confidence 3566677777776654432111 11144555555554432 2334444788899999998765 433
Q ss_pred C-CccccCCCCCcEEEccCCCCCCCCc--ccCCCCCccEEEcccCCCcccch-hhcCCccCcEEeccCCCCCCccChhhh
Q 005708 97 L-PSSLSFLINLRTLSLHDCRRFGDLP--LIGELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCVHLELIPRDVL 172 (681)
Q Consensus 97 l-p~~i~~l~~L~~L~L~~~~~~~~l~--~l~~L~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~~~~l 172 (681)
+ ..++.++..|+.+.+..+ ++.++ ++.++.+|+.+.+.. .+..++. .|..+.+|+.+.+.+ ..+..++...|
T Consensus 231 i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~aF 306 (379)
T 4h09_A 231 LGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDN-SAIETLEPRVF 306 (379)
T ss_dssp ECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECC-TTCCEECTTTT
T ss_pred EccccccCCccceEEEcCCC--ccEeCccccceeehhccccccc-cceeccccccccccccccccccc-cccceehhhhh
Confidence 3 456778999999999764 56665 788999999999965 4666654 578899999999987 45667887779
Q ss_pred cCCCCCcEEEcccCcccccccchhhhhhccchhhhcCCCCCcEEEEeC
Q 005708 173 SSLRKLEELYMSHSFCHWQFESEEDARSNAKFIELGALSRLTSLHIDI 220 (681)
Q Consensus 173 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 220 (681)
.++.+|+.+.+..+.. .-...++..+++|+.+.+..
T Consensus 307 ~~c~~L~~i~lp~~l~------------~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 307 MDCVKLSSVTLPTALK------------TIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TTCTTCCEEECCTTCC------------EECTTTTTTCTTCCCCCCCT
T ss_pred cCCCCCCEEEcCcccc------------EEHHHHhhCCCCCCEEEECC
Confidence 9999999999965421 12235688899999888754
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.48 E-value=0.0048 Score=52.08 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=37.2
Q ss_pred EEEccCCCCc--cCCCCCCCCCCcEEEccCCCCCCCChHHHhCCCCccEEEecCCCC
Q 005708 40 GISLMFNDIH--EVPDELECPKLQALFLQENSPLAIPDRFFQGMKDLKVLDLGGIRG 94 (681)
Q Consensus 40 ~L~l~~~~~~--~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~L~~~~~ 94 (681)
.++.+++.++ .+|..+. ++|+.|+|++|.+..++.++|..+++|++|+|.+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp-~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP-VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC-TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC-cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5666777766 6665432 4577777777777777777777777777777777654
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.99 E-value=0.041 Score=46.20 Aligned_cols=14 Identities=29% Similarity=0.086 Sum_probs=5.8
Q ss_pred ccEEEecCCCCCCC
Q 005708 84 LKVLDLGGIRGFSL 97 (681)
Q Consensus 84 Lr~L~L~~~~~~~l 97 (681)
|++|+|++|++..+
T Consensus 33 l~~L~Ls~N~l~~l 46 (130)
T 3rfe_A 33 TTELVLTGNNLTAL 46 (130)
T ss_dssp CSEEECTTSCCSSC
T ss_pred CCEEECCCCcCCcc
Confidence 34444444444333
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.63 E-value=0.03 Score=50.59 Aligned_cols=106 Identities=16% Similarity=0.111 Sum_probs=54.3
Q ss_pred CCCCccEEEecCC-CCC-----CCCccccCCCCCcEEEccCCCCCCCCc------ccCCCCCccEEEcccCCCc-----c
Q 005708 80 GMKDLKVLDLGGI-RGF-----SLPSSLSFLINLRTLSLHDCRRFGDLP------LIGELSLLEILDLSESDVS-----E 142 (681)
Q Consensus 80 ~l~~Lr~L~L~~~-~~~-----~lp~~i~~l~~L~~L~L~~~~~~~~l~------~l~~L~~L~~L~l~~~~i~-----~ 142 (681)
.-+.|+.|+|+++ ++. .+-..+..-..|+.|+|++|. +++.. .+..=+.|+.|+|++|.|. .
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 3345555555543 432 122333444555555555555 33221 2333455666666666665 3
Q ss_pred cchhhcCCccCcEEeccCCC--CCCc-----cChhhhcCCCCCcEEEcccCc
Q 005708 143 IPVSFGRLGHLRLLDLTDCV--HLEL-----IPRDVLSSLRKLEELYMSHSF 187 (681)
Q Consensus 143 lp~~i~~l~~L~~L~L~~~~--~~~~-----~~~~~l~~l~~L~~L~l~~~~ 187 (681)
+-+.+..-+.|++|+|+++. .++. +.. .+..=+.|..|+++.+.
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~-aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH-HHHhCCCcCeEeccCCC
Confidence 44445555668888887642 2222 112 24445678888887654
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.79 E-value=0.047 Score=49.30 Aligned_cols=59 Identities=14% Similarity=0.180 Sum_probs=27.9
Q ss_pred CCCCCcEEEccCCCCCCCC-----c-ccCCCCCccEEEcccCCCc-----ccchhhcCCccCcEEeccCC
Q 005708 103 FLINLRTLSLHDCRRFGDL-----P-LIGELSLLEILDLSESDVS-----EIPVSFGRLGHLRLLDLTDC 161 (681)
Q Consensus 103 ~l~~L~~L~L~~~~~~~~l-----~-~l~~L~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~L~~~ 161 (681)
+-..|+.|+|+++..+.+- . .+..=+.|+.|+|++|.+. .+.+.+..-+.|++|+|++|
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 3345555555553213321 1 3444455555666555554 23333334455555655553
No 165
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=61.98 E-value=1.6 Score=46.71 Aligned_cols=18 Identities=0% Similarity=0.309 Sum_probs=16.5
Q ss_pred CcchHHHHHHHHhcccce
Q 005708 1 MHDVVRYVAQQIASKNKF 18 (681)
Q Consensus 1 mHdl~~dla~~v~~~e~~ 18 (681)
|||+|||+|+.++.++++
T Consensus 456 mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 456 IDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp CCHHHHHHHHTTSCTHHH
T ss_pred eChHHHHHHHHHHHHHHH
Confidence 999999999999988775
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=45.70 E-value=20 Score=27.90 Aligned_cols=46 Identities=15% Similarity=0.109 Sum_probs=25.8
Q ss_pred CCCCCCChHHHhCCCCccEEEecCCCCCCC-CccccCCCCCcEEEccC
Q 005708 68 NSPLAIPDRFFQGMKDLKVLDLGGIRGFSL-PSSLSFLINLRTLSLHD 114 (681)
Q Consensus 68 ~~~~~l~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~L~~ 114 (681)
..++.|....|.++..|+.+.|..+ +..+ ..+|.+|.+|+.+.+.+
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3455566666666666666666643 3333 23455666666665554
Done!