Query 005709
Match_columns 681
No_of_seqs 567 out of 4532
Neff 8.8
Searched_HMMs 46136
Date Thu Mar 28 12:33:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005709.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005709hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 1.4E-81 3E-86 759.8 54.4 631 14-652 287-1098(1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 2.5E-49 5.4E-54 455.9 22.2 386 11-415 248-677 (889)
3 PF00931 NB-ARC: NB-ARC domain 99.9 2.2E-26 4.8E-31 239.2 6.2 169 12-180 90-269 (287)
4 PLN00113 leucine-rich repeat r 99.8 5.8E-21 1.3E-25 231.3 13.9 265 230-507 41-338 (968)
5 KOG0444 Cytoskeletal regulator 99.8 2.1E-20 4.5E-25 196.9 0.9 233 257-507 33-297 (1255)
6 PLN00113 leucine-rich repeat r 99.8 4.4E-19 9.5E-24 215.0 10.9 233 263-507 145-410 (968)
7 KOG4194 Membrane glycoprotein 99.7 1.6E-18 3.6E-23 182.0 1.6 162 262-436 177-350 (873)
8 KOG0444 Cytoskeletal regulator 99.7 5.8E-19 1.3E-23 186.1 -2.5 207 258-481 80-300 (1255)
9 KOG4194 Membrane glycoprotein 99.7 3.2E-17 7E-22 172.3 7.7 208 261-482 81-303 (873)
10 PLN03210 Resistant to P. syrin 99.7 4.1E-16 8.9E-21 190.1 16.4 101 382-483 777-880 (1153)
11 KOG0617 Ras suppressor protein 99.6 1.3E-17 2.7E-22 150.2 -3.1 151 315-471 33-195 (264)
12 KOG0472 Leucine-rich repeat pr 99.6 1E-17 2.2E-22 169.2 -4.9 196 274-484 83-309 (565)
13 PRK15387 E3 ubiquitin-protein 99.6 4.7E-15 1E-19 168.9 15.6 237 263-549 206-457 (788)
14 KOG0472 Leucine-rich repeat pr 99.6 4.2E-18 9.2E-23 171.8 -10.0 226 264-506 51-302 (565)
15 PRK15387 E3 ubiquitin-protein 99.6 1.2E-14 2.6E-19 165.6 12.0 189 281-482 241-455 (788)
16 PRK15370 E3 ubiquitin-protein 99.6 1.7E-14 3.7E-19 165.3 12.2 178 282-486 199-381 (754)
17 PRK15370 E3 ubiquitin-protein 99.5 1.1E-14 2.4E-19 166.8 10.0 195 257-483 200-399 (754)
18 KOG0617 Ras suppressor protein 99.5 5E-16 1.1E-20 139.9 -5.6 157 278-449 29-194 (264)
19 KOG0618 Serine/threonine phosp 99.4 8.8E-15 1.9E-19 162.0 -1.4 214 262-488 245-492 (1081)
20 KOG0618 Serine/threonine phosp 99.4 6.1E-14 1.3E-18 155.5 0.0 172 313-491 239-487 (1081)
21 KOG4237 Extracellular matrix p 99.2 8.4E-13 1.8E-17 133.8 -4.2 213 257-483 68-333 (498)
22 KOG0532 Leucine-rich repeat (L 99.1 2.1E-12 4.5E-17 136.5 -5.1 158 319-483 79-245 (722)
23 KOG4237 Extracellular matrix p 99.1 1.5E-11 3.2E-16 124.9 -1.5 108 313-424 65-181 (498)
24 KOG0532 Leucine-rich repeat (L 99.0 2.7E-11 5.8E-16 128.3 -4.5 185 281-482 74-270 (722)
25 cd00116 LRR_RI Leucine-rich re 98.9 4.5E-10 9.7E-15 118.4 2.4 200 277-483 46-289 (319)
26 cd00116 LRR_RI Leucine-rich re 98.9 2.9E-10 6.3E-15 119.8 0.9 197 275-483 74-318 (319)
27 COG4886 Leucine-rich repeat (L 98.9 1.8E-09 3.9E-14 117.6 6.1 169 315-489 116-294 (394)
28 COG4886 Leucine-rich repeat (L 98.8 5.7E-09 1.2E-13 113.6 5.1 178 275-466 109-295 (394)
29 KOG1259 Nischarin, modulator o 98.7 1.3E-09 2.9E-14 107.0 -0.8 129 282-424 284-416 (490)
30 PF14580 LRR_9: Leucine-rich r 98.7 8.8E-09 1.9E-13 97.3 3.7 122 279-413 16-147 (175)
31 KOG4658 Apoptotic ATPase [Sign 98.7 9.9E-09 2.2E-13 120.1 4.0 234 240-488 530-786 (889)
32 PF14580 LRR_9: Leucine-rich r 98.7 1.2E-08 2.7E-13 96.3 3.8 82 335-421 17-102 (175)
33 KOG3207 Beta-tubulin folding c 98.6 6.1E-09 1.3E-13 107.6 0.4 154 254-417 119-282 (505)
34 KOG1259 Nischarin, modulator o 98.6 4.9E-09 1.1E-13 103.1 -0.3 168 281-483 213-410 (490)
35 KOG0531 Protein phosphatase 1, 98.3 8.6E-08 1.9E-12 104.9 -0.9 190 280-486 70-269 (414)
36 PRK04841 transcriptional regul 98.2 3.2E-05 6.9E-10 93.7 18.6 196 22-228 120-335 (903)
37 PLN03150 hypothetical protein; 98.2 2.3E-06 5E-11 98.2 7.2 84 339-425 420-509 (623)
38 PRK15386 type III secretion pr 98.2 6.6E-06 1.4E-10 87.2 9.9 92 384-484 113-212 (426)
39 PF13855 LRR_8: Leucine rich r 98.2 1.8E-06 3.9E-11 66.8 3.6 58 338-417 2-60 (61)
40 PLN03150 hypothetical protein; 98.1 2.8E-06 6.2E-11 97.4 6.5 101 316-419 419-528 (623)
41 KOG3207 Beta-tubulin folding c 98.1 9.2E-07 2E-11 91.8 1.8 189 279-481 118-335 (505)
42 PF13855 LRR_8: Leucine rich r 98.1 2.8E-06 6E-11 65.8 4.0 39 316-354 2-42 (61)
43 PRK15386 type III secretion pr 98.1 1E-05 2.3E-10 85.7 9.0 133 278-437 48-187 (426)
44 KOG1859 Leucine-rich repeat pr 98.1 2.5E-07 5.4E-12 101.1 -3.9 118 382-507 163-285 (1096)
45 KOG1909 Ran GTPase-activating 97.9 1.4E-06 3E-11 88.2 -2.0 234 243-483 17-309 (382)
46 KOG0531 Protein phosphatase 1, 97.9 2.4E-06 5.1E-11 93.5 -0.5 169 278-463 91-270 (414)
47 PF12799 LRR_4: Leucine Rich r 97.6 3.2E-05 6.8E-10 55.2 2.3 41 383-424 1-41 (44)
48 PF12799 LRR_4: Leucine Rich r 97.6 3.7E-05 8.1E-10 54.9 2.2 39 315-353 1-40 (44)
49 KOG1859 Leucine-rich repeat pr 97.6 1.4E-06 3.1E-11 95.4 -7.8 117 316-438 165-290 (1096)
50 KOG1909 Ran GTPase-activating 97.6 6.8E-06 1.5E-10 83.3 -2.6 178 273-461 83-311 (382)
51 KOG4579 Leucine-rich repeat (L 97.5 4.8E-06 1E-10 73.4 -3.8 77 316-415 54-132 (177)
52 KOG4579 Leucine-rich repeat (L 97.5 4.4E-06 9.5E-11 73.6 -4.2 104 262-377 31-139 (177)
53 KOG2120 SCF ubiquitin ligase, 97.2 5.6E-06 1.2E-10 82.0 -7.5 96 339-437 187-296 (419)
54 KOG1644 U2-associated snRNP A' 97.2 0.00049 1.1E-08 65.0 5.1 104 310-415 37-149 (233)
55 KOG3665 ZYG-1-like serine/thre 97.1 0.00018 3.8E-09 82.8 1.4 53 335-391 171-228 (699)
56 KOG2982 Uncharacterized conser 96.9 0.00026 5.6E-09 70.5 0.8 180 280-489 69-266 (418)
57 KOG3665 ZYG-1-like serine/thre 96.8 0.00028 6E-09 81.2 -0.0 77 336-415 147-229 (699)
58 KOG2120 SCF ubiquitin ligase, 96.7 5.6E-05 1.2E-09 75.1 -5.9 148 277-437 205-373 (419)
59 KOG1644 U2-associated snRNP A' 96.3 0.0048 1.1E-07 58.5 4.7 60 362-422 41-103 (233)
60 KOG2982 Uncharacterized conser 96.2 0.0032 7E-08 62.9 3.1 153 275-444 90-266 (418)
61 COG3903 Predicted ATPase [Gene 95.8 0.0053 1.2E-07 64.5 2.4 212 14-228 79-317 (414)
62 PF13306 LRR_5: Leucine rich r 95.7 0.037 8.1E-07 49.4 7.3 103 273-391 3-111 (129)
63 TIGR03015 pepcterm_ATPase puta 95.6 0.16 3.6E-06 51.8 12.9 103 21-124 121-242 (269)
64 PRK06893 DNA replication initi 95.6 0.035 7.5E-07 55.5 7.3 91 25-118 93-201 (229)
65 COG5238 RNA1 Ran GTPase-activa 95.5 0.0053 1.2E-07 60.6 1.2 103 379-483 88-225 (388)
66 PF00560 LRR_1: Leucine Rich R 95.3 0.0072 1.6E-07 36.0 0.9 22 384-405 1-22 (22)
67 TIGR00635 ruvB Holliday juncti 95.3 0.35 7.6E-06 50.5 14.1 145 49-207 130-289 (305)
68 KOG2739 Leucine-rich acidic nu 95.3 0.0089 1.9E-07 59.0 1.8 101 315-437 43-153 (260)
69 PF05729 NACHT: NACHT domain 95.1 0.049 1.1E-06 50.8 6.4 69 21-89 79-163 (166)
70 PRK00080 ruvB Holliday junctio 94.8 0.082 1.8E-06 55.9 7.7 150 49-207 151-310 (328)
71 COG2909 MalT ATP-dependent tra 94.7 0.36 7.8E-06 55.5 12.5 203 12-228 116-341 (894)
72 KOG2739 Leucine-rich acidic nu 94.5 0.023 5.1E-07 56.1 2.4 60 378-438 60-127 (260)
73 KOG2123 Uncharacterized conser 94.4 0.0023 4.9E-08 63.4 -4.8 95 315-433 19-123 (388)
74 PF13306 LRR_5: Leucine rich r 93.8 0.16 3.5E-06 45.2 6.4 74 335-413 10-88 (129)
75 PF01637 Arch_ATPase: Archaeal 93.4 0.26 5.6E-06 48.8 7.7 104 14-119 107-233 (234)
76 COG3899 Predicted ATPase [Gene 93.3 0.86 1.9E-05 54.4 13.0 207 16-225 146-386 (849)
77 KOG2123 Uncharacterized conser 93.1 0.0058 1.2E-07 60.6 -4.5 80 362-443 18-104 (388)
78 COG5238 RNA1 Ran GTPase-activa 93.1 0.036 7.8E-07 55.0 0.9 165 234-415 8-194 (388)
79 PF00560 LRR_1: Leucine Rich R 92.9 0.064 1.4E-06 31.8 1.5 21 449-470 1-21 (22)
80 PRK07471 DNA polymerase III su 92.8 0.91 2E-05 48.6 11.1 94 22-121 140-239 (365)
81 KOG4341 F-box protein containi 92.5 0.003 6.5E-08 66.0 -7.8 56 382-437 293-356 (483)
82 PRK00411 cdc6 cell division co 92.3 3.6 7.8E-05 44.6 15.4 151 12-170 125-306 (394)
83 PF13504 LRR_7: Leucine rich r 91.5 0.13 2.7E-06 28.5 1.4 16 384-399 2-17 (17)
84 PF13504 LRR_7: Leucine rich r 91.5 0.12 2.6E-06 28.6 1.3 16 316-331 2-17 (17)
85 TIGR02928 orc1/cdc6 family rep 90.6 14 0.00031 39.4 17.7 187 14-207 118-350 (365)
86 KOG4341 F-box protein containi 90.0 0.02 4.3E-07 60.1 -4.8 36 405-440 293-333 (483)
87 PF14516 AAA_35: AAA-like doma 88.1 13 0.00028 39.3 14.7 127 67-214 192-321 (331)
88 KOG0473 Leucine-rich repeat pr 87.7 0.025 5.3E-07 54.9 -5.5 53 315-370 65-118 (326)
89 smart00370 LRR Leucine-rich re 87.3 0.4 8.7E-06 29.6 1.6 21 382-402 1-21 (26)
90 smart00369 LRR_TYP Leucine-ric 87.3 0.4 8.7E-06 29.6 1.6 21 382-402 1-21 (26)
91 PRK05564 DNA polymerase III su 87.1 4.3 9.2E-05 42.6 10.3 93 22-120 92-190 (313)
92 TIGR00678 holB DNA polymerase 86.5 2.8 6.2E-05 40.2 7.9 87 22-116 95-187 (188)
93 KOG0473 Leucine-rich repeat pr 86.3 0.034 7.3E-07 53.9 -5.4 78 315-395 42-123 (326)
94 smart00370 LRR Leucine-rich re 86.1 0.48 1E-05 29.2 1.5 21 336-356 1-21 (26)
95 smart00369 LRR_TYP Leucine-ric 86.1 0.48 1E-05 29.2 1.5 21 336-356 1-21 (26)
96 PRK09112 DNA polymerase III su 85.8 3.3 7.1E-05 44.1 8.6 96 22-121 140-241 (351)
97 TIGR03420 DnaA_homol_Hda DnaA 85.8 2.7 5.9E-05 41.5 7.7 95 25-121 92-202 (226)
98 PRK09087 hypothetical protein; 85.7 2.4 5.1E-05 42.2 7.1 90 25-119 89-194 (226)
99 PF13173 AAA_14: AAA domain 85.6 1.3 2.9E-05 39.5 4.8 67 15-81 53-127 (128)
100 PRK13342 recombination factor 84.5 4.5 9.8E-05 44.2 9.2 99 21-122 90-198 (413)
101 PF07725 LRR_3: Leucine Rich R 83.4 0.93 2E-05 26.2 1.7 20 338-357 1-20 (20)
102 smart00364 LRR_BAC Leucine-ric 81.8 0.91 2E-05 28.1 1.3 18 315-332 2-19 (26)
103 PRK08727 hypothetical protein; 81.5 4.8 0.0001 40.2 7.3 89 25-116 95-200 (233)
104 PRK05707 DNA polymerase III su 80.8 4.5 9.7E-05 42.7 7.1 92 22-120 106-203 (328)
105 PRK14963 DNA polymerase III su 80.6 16 0.00034 41.0 11.7 94 22-117 115-214 (504)
106 PRK07003 DNA polymerase III su 79.8 39 0.00086 39.5 14.5 96 22-119 118-220 (830)
107 PRK14961 DNA polymerase III su 79.4 16 0.00035 39.1 11.0 97 22-120 118-220 (363)
108 PRK06645 DNA polymerase III su 79.0 8.8 0.00019 43.0 9.0 94 22-117 127-226 (507)
109 PRK06090 DNA polymerase III su 78.4 13 0.00027 39.1 9.4 106 22-140 107-218 (319)
110 PRK05642 DNA replication initi 78.1 7.1 0.00015 39.0 7.3 90 26-117 100-205 (234)
111 PF00308 Bac_DnaA: Bacterial d 77.8 7 0.00015 38.6 7.1 77 14-91 89-181 (219)
112 PRK14087 dnaA chromosomal repl 76.8 16 0.00034 40.5 10.1 101 24-124 207-323 (450)
113 PRK08084 DNA replication initi 76.4 12 0.00027 37.3 8.5 89 26-117 100-206 (235)
114 TIGR02903 spore_lon_C ATP-depe 76.0 13 0.00028 42.9 9.5 109 12-123 281-398 (615)
115 TIGR02397 dnaX_nterm DNA polym 75.1 17 0.00037 38.6 9.8 98 22-121 116-219 (355)
116 PRK12402 replication factor C 73.4 17 0.00036 38.3 9.1 94 23-118 125-224 (337)
117 KOG3864 Uncharacterized conser 73.3 1.4 3E-05 42.3 0.6 63 257-326 100-162 (221)
118 PRK07399 DNA polymerase III su 73.2 24 0.00052 37.0 9.9 94 22-121 123-222 (314)
119 PRK07940 DNA polymerase III su 72.7 16 0.00035 39.6 8.7 92 22-120 116-213 (394)
120 smart00364 LRR_BAC Leucine-ric 72.6 2.4 5.2E-05 26.3 1.3 18 337-354 2-19 (26)
121 TIGR01242 26Sp45 26S proteasom 72.0 14 0.0003 39.6 8.1 88 23-114 215-328 (364)
122 KOG3864 Uncharacterized conser 71.5 1.1 2.4E-05 42.9 -0.4 78 336-415 100-185 (221)
123 PRK00440 rfc replication facto 70.9 49 0.0011 34.3 11.9 93 23-117 102-200 (319)
124 PRK06871 DNA polymerase III su 70.3 19 0.00041 37.8 8.4 89 22-117 106-200 (325)
125 KOG1947 Leucine rich repeat pr 69.6 1 2.2E-05 50.1 -1.4 61 379-439 210-281 (482)
126 COG2256 MGS1 ATPase related to 69.4 15 0.00032 39.2 7.1 95 18-115 99-207 (436)
127 PRK08769 DNA polymerase III su 68.5 21 0.00045 37.5 8.2 92 22-121 112-209 (319)
128 PRK06964 DNA polymerase III su 68.1 46 0.00099 35.3 10.7 90 22-121 131-226 (342)
129 PRK07994 DNA polymerase III su 67.7 44 0.00094 38.7 11.1 98 21-120 117-220 (647)
130 PRK14959 DNA polymerase III su 67.4 30 0.00066 39.6 9.7 102 21-124 117-225 (624)
131 PRK06620 hypothetical protein; 66.7 31 0.00066 33.9 8.6 85 24-113 86-182 (214)
132 PRK12323 DNA polymerase III su 66.3 16 0.00035 41.9 7.2 97 22-120 123-225 (700)
133 PRK08903 DnaA regulatory inact 66.1 18 0.00038 35.8 6.9 97 25-124 92-203 (227)
134 PRK14949 DNA polymerase III su 64.4 23 0.00049 42.2 8.1 98 21-120 117-220 (944)
135 PLN03025 replication factor C 64.0 36 0.00077 35.7 9.1 93 22-116 98-196 (319)
136 smart00365 LRR_SD22 Leucine-ri 62.8 5.7 0.00012 24.7 1.6 17 336-352 1-17 (26)
137 PRK14970 DNA polymerase III su 60.2 84 0.0018 33.6 11.3 94 22-117 107-206 (367)
138 PRK08691 DNA polymerase III su 59.9 38 0.00083 39.3 8.7 96 22-119 118-219 (709)
139 KOG0989 Replication factor C, 59.1 28 0.0006 35.9 6.7 95 25-121 131-232 (346)
140 PRK14960 DNA polymerase III su 57.5 55 0.0012 37.8 9.4 96 22-119 117-218 (702)
141 PRK07764 DNA polymerase III su 56.6 78 0.0017 37.9 10.9 94 22-117 119-218 (824)
142 PRK14950 DNA polymerase III su 54.4 78 0.0017 36.4 10.3 97 22-120 119-221 (585)
143 PRK06305 DNA polymerase III su 54.0 1.2E+02 0.0026 33.5 11.4 92 22-115 120-217 (451)
144 PRK04195 replication factor C 53.6 1.7E+02 0.0037 32.7 12.7 95 23-121 98-203 (482)
145 PRK08451 DNA polymerase III su 53.5 76 0.0016 35.9 9.7 97 22-120 116-218 (535)
146 COG1373 Predicted ATPase (AAA+ 53.2 32 0.0007 37.3 6.6 62 23-85 94-163 (398)
147 PRK14956 DNA polymerase III su 51.9 58 0.0013 36.1 8.3 95 21-117 119-219 (484)
148 PRK14957 DNA polymerase III su 51.0 69 0.0015 36.3 8.9 92 22-115 118-215 (546)
149 PF02463 SMC_N: RecF/RecN/SMC 50.6 11 0.00023 37.1 2.3 48 24-73 159-211 (220)
150 cd00561 CobA_CobO_BtuR ATP:cor 50.4 17 0.00037 33.9 3.4 46 14-59 85-138 (159)
151 TIGR00362 DnaA chromosomal rep 50.2 55 0.0012 35.6 7.9 89 26-116 202-306 (405)
152 PRK14962 DNA polymerase III su 49.8 67 0.0014 35.8 8.5 99 22-122 116-221 (472)
153 PRK14951 DNA polymerase III su 49.6 1.1E+02 0.0023 35.4 10.2 96 22-119 123-224 (618)
154 PRK14971 DNA polymerase III su 48.7 1.6E+02 0.0035 34.0 11.6 95 22-118 120-220 (614)
155 PRK14954 DNA polymerase III su 47.4 1.7E+02 0.0037 33.8 11.4 91 22-115 126-223 (620)
156 smart00367 LRR_CC Leucine-rich 46.6 13 0.00029 22.7 1.4 11 428-438 3-13 (26)
157 PF13516 LRR_6: Leucine Rich r 46.3 9.7 0.00021 22.7 0.7 14 337-350 2-15 (24)
158 PRK14955 DNA polymerase III su 45.9 54 0.0012 35.6 7.0 96 22-119 126-227 (397)
159 PRK08058 DNA polymerase III su 45.8 63 0.0014 34.1 7.3 66 22-87 109-180 (329)
160 PTZ00112 origin recognition co 45.6 3.6E+02 0.0079 32.7 13.5 136 24-169 870-1029(1164)
161 PRK07133 DNA polymerase III su 45.0 1.6E+02 0.0034 34.7 10.7 96 22-119 117-218 (725)
162 PRK14086 dnaA chromosomal repl 44.0 62 0.0013 37.1 7.1 66 26-91 380-461 (617)
163 PRK08485 DNA polymerase III su 43.1 1E+02 0.0022 29.9 7.4 64 22-87 55-137 (206)
164 PRK13341 recombination factor 42.3 97 0.0021 36.5 8.7 89 22-114 108-211 (725)
165 PRK14969 DNA polymerase III su 42.2 2.2E+02 0.0048 32.2 11.3 94 22-117 118-217 (527)
166 PRK09111 DNA polymerase III su 42.1 3.4E+02 0.0073 31.3 12.8 96 23-120 132-233 (598)
167 PRK07993 DNA polymerase III su 41.6 87 0.0019 33.1 7.5 90 22-118 107-202 (334)
168 PRK14964 DNA polymerase III su 40.1 1.3E+02 0.0028 33.7 8.7 94 22-117 115-214 (491)
169 PRK06647 DNA polymerase III su 39.2 3.6E+02 0.0077 30.9 12.4 97 22-120 118-220 (563)
170 PRK06581 DNA polymerase III su 38.4 1.2E+02 0.0026 30.5 7.3 69 21-89 87-161 (263)
171 PRK03992 proteasome-activating 37.7 1.9E+02 0.0042 31.2 9.6 88 22-113 223-336 (389)
172 PRK04132 replication factor C 36.7 2E+02 0.0044 34.5 10.1 95 23-119 630-730 (846)
173 PRK07132 DNA polymerase III su 36.6 5.1E+02 0.011 26.9 12.7 90 22-119 89-184 (299)
174 PRK00149 dnaA chromosomal repl 36.3 1E+02 0.0022 34.1 7.4 120 16-139 205-349 (450)
175 KOG3763 mRNA export factor TAP 36.2 11 0.00024 41.7 -0.2 36 381-416 216-254 (585)
176 PRK14953 DNA polymerase III su 36.1 2.6E+02 0.0057 31.2 10.6 98 22-121 118-221 (486)
177 PRK14088 dnaA chromosomal repl 35.5 1.7E+02 0.0037 32.3 8.9 93 18-113 189-298 (440)
178 smart00368 LRR_RI Leucine rich 35.3 27 0.00059 21.9 1.6 14 337-350 2-15 (28)
179 PRK14958 DNA polymerase III su 35.1 2.6E+02 0.0056 31.5 10.4 95 22-118 118-218 (509)
180 KOG4308 LRR-containing protein 35.1 0.51 1.1E-05 52.3 -10.9 72 275-350 108-185 (478)
181 KOG1947 Leucine rich repeat pr 34.1 6.5 0.00014 43.5 -2.5 105 380-485 185-308 (482)
182 PRK14948 DNA polymerase III su 32.3 2.6E+02 0.0057 32.4 10.0 97 22-121 120-223 (620)
183 PHA02544 44 clamp loader, smal 30.1 3E+02 0.0066 28.4 9.5 65 23-87 100-171 (316)
184 PRK07414 cob(I)yrinic acid a,c 28.7 59 0.0013 30.9 3.3 47 13-59 104-158 (178)
185 PRK07276 DNA polymerase III su 28.6 3.5E+02 0.0075 28.0 9.2 64 22-86 103-172 (290)
186 PRK05986 cob(I)alamin adenolsy 28.5 60 0.0013 31.2 3.4 47 13-59 104-158 (191)
187 cd00009 AAA The AAA+ (ATPases 27.5 1.1E+02 0.0023 26.7 4.9 41 20-60 81-131 (151)
188 PTZ00454 26S protease regulato 26.7 3.2E+02 0.007 29.6 9.0 70 21-90 236-330 (398)
189 PRK14952 DNA polymerase III su 26.4 3.1E+02 0.0068 31.4 9.2 92 22-115 117-214 (584)
190 PRK05896 DNA polymerase III su 26.2 2.3E+02 0.0051 32.5 8.0 89 24-115 120-215 (605)
191 COG2109 BtuR ATP:corrinoid ade 26.0 79 0.0017 30.3 3.6 48 12-59 110-165 (198)
192 TIGR02880 cbbX_cfxQ probable R 25.9 2.7E+02 0.0058 28.6 8.0 67 24-90 122-209 (284)
193 PTZ00361 26 proteosome regulat 25.7 1.2E+02 0.0027 33.3 5.6 71 21-91 274-369 (438)
194 COG1474 CDC6 Cdc6-related prot 25.2 5E+02 0.011 27.8 10.0 149 12-170 110-289 (366)
195 TIGR00708 cobA cob(I)alamin ad 25.1 63 0.0014 30.6 2.8 48 12-59 85-140 (173)
196 COG0593 DnaA ATPase involved i 24.9 2.8E+02 0.0061 30.2 8.0 67 25-91 177-259 (408)
197 PRK14965 DNA polymerase III su 24.4 2.2E+02 0.0048 32.6 7.6 91 22-114 118-214 (576)
198 PF05725 FNIP: FNIP Repeat; I 24.1 1.4E+02 0.003 20.9 3.8 13 312-324 9-21 (44)
199 PRK12422 chromosomal replicati 23.9 2.8E+02 0.006 30.7 8.0 67 25-91 204-286 (445)
200 PRK05563 DNA polymerase III su 23.9 4.6E+02 0.0099 30.0 10.0 95 22-118 118-218 (559)
201 PRK09162 hypoxanthine-guanine 22.9 58 0.0013 31.0 2.2 31 19-50 94-127 (181)
202 PF13177 DNA_pol3_delta2: DNA 22.5 70 0.0015 29.8 2.6 55 23-77 102-162 (162)
203 TIGR03689 pup_AAA proteasome A 22.4 1.9E+02 0.0041 32.6 6.3 68 22-89 288-378 (512)
204 PF02572 CobA_CobO_BtuR: ATP:c 22.3 69 0.0015 30.3 2.5 48 12-59 84-139 (172)
205 PF07693 KAP_NTPase: KAP famil 21.8 5.3E+02 0.012 26.6 9.5 74 13-88 160-262 (325)
206 PRK10536 hypothetical protein; 21.7 71 0.0015 32.3 2.6 41 19-59 169-213 (262)
207 PF02562 PhoH: PhoH-like prote 21.4 64 0.0014 31.5 2.1 38 19-59 112-156 (205)
208 PRK08699 DNA polymerase III su 20.9 2.5E+02 0.0055 29.5 6.7 59 48-116 142-202 (325)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.4e-81 Score=759.78 Aligned_cols=631 Identities=32% Similarity=0.514 Sum_probs=513.7
Q ss_pred HHHHHHhCCCeEEEEEECcChh--HHHhhcCCCCCCCCcEEEEEeCCchhhhccCCceEEEcCCCCHHHHHHHHHHHhcc
Q 005709 14 PNIKKRLQQRKVLIVLDDVDDN--SKNFAGGLELFSPGSRIIITTRDKRLLDKRRVENVYEVKGLKHNSALELFCRKAFR 91 (681)
Q Consensus 14 ~~i~~~L~~kr~LiVLDdv~~~--~~~l~~~~~~~~~gSrIivTTR~~~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~af~ 91 (681)
..++++|++||+||||||||+. |+.+.+...|+++|||||||||+++++..++++.+|+|+.|+++|||+||+++||+
T Consensus 287 ~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~ 366 (1153)
T PLN03210 287 GAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFK 366 (1153)
T ss_pred HHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcC
Confidence 5688999999999999999998 99999988999999999999999999998888899999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHcCCChhHHHHHHhhhcCCCHHHHHHHHHHhhhcCChhHHHHHHHHhcCCCH-HHHHHHhhhc
Q 005709 92 QNNRSPDLLELSEEVAHYANGNPLALQVLGSSLYQKSKEQWKDKLRKLKLITDPNIYKVLKISYDGLNW-EEKEIFLDVA 170 (681)
Q Consensus 92 ~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~L~~k~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~-~~k~cfl~~a 170 (681)
+..+++++.+++++|+++|+|+||||+++|++|++++.++|+.++++++..++.+|..+|++||++|++ .+|.||++||
T Consensus 367 ~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia 446 (1153)
T PLN03210 367 KNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIA 446 (1153)
T ss_pred CCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheeh
Confidence 887778899999999999999999999999999999999999999999998888999999999999986 5899999999
Q ss_pred ccCCCCCHHHHHHhhcCC-CchhhhHHHHhhccceeEeCCeEeehHHHHHHHHHHhhhccccCCCceeecccCchhhHHh
Q 005709 171 CFFKGEDVDFVTRVQDDP-TSMHNGLNTLVEMSLITISANRLQMHDILQELGKTIILQESFKEPGKRSKLWDHKDVYQVL 249 (681)
Q Consensus 171 ~Fp~~~~~~~~~~i~~~~-~~~~~~~~~L~~~sli~~~~~~~~mHdll~~~~~~i~~~e~~~~~~~~~~l~~~~~~~~vl 249 (681)
|||++.+++.+..++.+. ..++.+++.|+++|||++..++++|||++|+||++++++++ .+|++++++|+++++++++
T Consensus 447 ~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl 525 (1153)
T PLN03210 447 CLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVL 525 (1153)
T ss_pred hhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHH
Confidence 999999999988876655 77888999999999999998999999999999999999997 7899999999999999999
Q ss_pred hcCcCCCcEEEEEeecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCC
Q 005709 250 KKNKGTDAIEGIFFDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKT 329 (681)
Q Consensus 250 ~~~~~~~~v~~l~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~ 329 (681)
..++|+.++++|++|.+......+.+.+|.+|++|++|.++.+.+.. ......++|.++..+|.+|++|+|.+|+++.
T Consensus 526 ~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~--~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~ 603 (1153)
T PLN03210 526 EDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQ--KKEVRWHLPEGFDYLPPKLRLLRWDKYPLRC 603 (1153)
T ss_pred HhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccc--cccceeecCcchhhcCcccEEEEecCCCCCC
Confidence 99999999999999999999899999999999999999998764321 1112467899999999999999999999999
Q ss_pred CCCCCCCCCceEEEcCCCCcccccccccccccccccceecc---cCCcccCCCCCCCCCcEEEcc-cCCCcccCccccCC
Q 005709 330 LPFSFEPNYLIELNLPYSKVEQIWIGEKKAFKLKFINLYNS---RYLTRLPEFSEIPNLERINLS-GSELERLPATIKQF 405 (681)
Q Consensus 330 lp~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~~L~l---~~l~~lp~~~~l~~L~~L~L~-~n~l~~lp~~i~~L 405 (681)
+|..|.+.+|++|+|++|+++.+|.++.. +++|+.|++ +.++.+|+++.+++|++|+|+ |+.+..+|.+++++
T Consensus 604 lP~~f~~~~L~~L~L~~s~l~~L~~~~~~---l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L 680 (1153)
T PLN03210 604 MPSNFRPENLVKLQMQGSKLEKLWDGVHS---LTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYL 680 (1153)
T ss_pred CCCcCCccCCcEEECcCcccccccccccc---CCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhcc
Confidence 99999999999999999999999999988 999999999 468899999999999999999 78899999999999
Q ss_pred CccceeccccccccCcCCCC--CCCCCEEeccCCCCCcccCCCCCCccEEecccccccc---------------------
Q 005709 406 SQLRYLYLRNCNMLQSLPEL--PLLLSHLDASNCKRLQSLPEISSCLEELDISILEKLS--------------------- 462 (681)
Q Consensus 406 ~~L~~L~L~~c~~l~~lp~~--l~~L~~L~l~~c~~l~~lp~~~~~L~~L~l~~n~l~~--------------------- 462 (681)
++|+.|++++|+.++.+|.. +++|+.|++++|..++.+|....+|++|++++|.+..
T Consensus 681 ~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~ 760 (1153)
T PLN03210 681 NKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSE 760 (1153)
T ss_pred CCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchh
Confidence 99999999999999999985 7889999999998887777655555555555554433
Q ss_pred ---------------------------------cccccccCCCCCcEEEccCCc---------------cccccc-----
Q 005709 463 ---------------------------------KTTFPIKHGCSLMQFEFQNCW---------------ELKENK----- 489 (681)
Q Consensus 463 ---------------------------------~~~~~l~~l~~L~~L~l~~c~---------------~L~l~~----- 489 (681)
+|.+ ++++++|+.|++++|. .|++++
T Consensus 761 ~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s-i~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~ 839 (1153)
T PLN03210 761 KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS-IQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLR 839 (1153)
T ss_pred hccccccccchhhhhccccchheeCCCCCCccccChh-hhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccc
Confidence 3333 5566677777777664 122333
Q ss_pred ----------------cccCh--HHHHHhhHHHHHH----------------------------HHHh-----h------
Q 005709 490 ----------------ILEDS--ELRIQHMAIASLR----------------------------LFYE-----K------ 512 (681)
Q Consensus 490 ----------------~~l~~--~~i~~l~~L~~L~----------------------------~~~~-----~------ 512 (681)
|.+.. .++..+++|+.|+ ..+. .
T Consensus 840 ~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~ 919 (1153)
T PLN03210 840 TFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVA 919 (1153)
T ss_pred cccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhh
Confidence 22211 2233333322221 0000 0
Q ss_pred ---------------------ccC----------CCCeEEccCCCCCccccccccCCeEE-EeCCCcCcC-CcceEEEEE
Q 005709 513 ---------------------EQL----------YCPSILLPGSEIPKWFAFQNIGPLIA-LQLPEHCLI-NLIGFALCA 559 (681)
Q Consensus 513 ---------------------~~~----------~~~~~~l~G~~iP~w~~~~~~g~~~~-i~l~~~~~~-~~~gf~~c~ 559 (681)
..+ ....+++||.++|+||.|++.|++++ |.+|+.|+. .|.||++|+
T Consensus 920 ~~~~n~~~~~p~~~~l~f~nC~~L~~~a~l~~~~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~~~~~~~f~~c~ 999 (1153)
T PLN03210 920 MATDNIHSKLPSTVCINFINCFNLDQEALLQQQSIFKQLILSGEEVPSYFTHRTTGASLTNIPLLHISPCQPFFRFRACA 999 (1153)
T ss_pred hhcccccccCCchhccccccccCCCchhhhcccccceEEECCCccCchhccCCcccceeeeeccCCcccCCCccceEEEE
Confidence 000 01157899999999999999999998 999999998 899999999
Q ss_pred EeecCCCCCCCCCCeeeEEEEEEecCCCCCccceeeeccCCCCCCCCeEEEEecCCCcCCC-CCCCCCCCcEEEEEE--e
Q 005709 560 VIDFKHLPSNSWDSFNINCGIYIKMNKPEDLSFNCFLASIRDAIDSDHVILGFSPLGIGGF-PVGGGNHNTTVLVDF--F 636 (681)
Q Consensus 560 v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~sdh~~l~~~~~~~~~~-~~~~~~~~~~~~~~f--~ 636 (681)
|+++..... ....+.+.|.|++++.+++.....+..+.+.....++|++++......... ....+..++|++++| .
T Consensus 1000 v~~~~~~~~-~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 1078 (1153)
T PLN03210 1000 VVDSESFFI-ISVSFDIQVCCRFIDRLGNHFDSPYQPHVFSVTKKGSHLVIFDCCFPLNEDNAPLAELNYDHVDIQFRLT 1078 (1153)
T ss_pred EEecCcccc-CCCceeEEEEEEEECCCCCccccCCCceeEeeeccccceEEecccccccccccchhccCCceeeEEEEEe
Confidence 999876542 334788999999998877654321111111112234444443322111111 111233466666666 2
Q ss_pred ----ccEEEeeeeEEEecCC
Q 005709 637 ----PAKVKCCGVSPVYADP 652 (681)
Q Consensus 637 ----~~~vk~cGv~lvy~~~ 652 (681)
.++||+||||++|+.+
T Consensus 1079 ~~~~~~~~~~cg~~~~~~~~ 1098 (1153)
T PLN03210 1079 NKNSQLKLKGCGIRLSEDDS 1098 (1153)
T ss_pred cCCCCeEEEeeeEEEeccCC
Confidence 3589999999999766
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-49 Score=455.89 Aligned_cols=386 Identities=25% Similarity=0.318 Sum_probs=304.1
Q ss_pred C-chHHHHHHhCCCeEEEEEECcChh--HHHhhcCCCCCCCCcEEEEEeCCchhhhc-cCCceEEEcCCCCHHHHHHHHH
Q 005709 11 T-ITPNIKKRLQQRKVLIVLDDVDDN--SKNFAGGLELFSPGSRIIITTRDKRLLDK-RRVENVYEVKGLKHNSALELFC 86 (681)
Q Consensus 11 ~-~~~~i~~~L~~kr~LiVLDdv~~~--~~~l~~~~~~~~~gSrIivTTR~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~ 86 (681)
+ .+..|.+.|++|||+|||||||+. |+.+..+++....||||++|||++.|+.. +++...++++.|.++|||+||+
T Consensus 248 ~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~ 327 (889)
T KOG4658|consen 248 DELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQ 327 (889)
T ss_pred HHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHH
Confidence 5 778899999999999999999999 99999999998899999999999999998 8888899999999999999999
Q ss_pred HHhccC-CCCChhHHHHHHHHHHHcCCChhHHHHHHhhhcCC-CHHHHHHHHHHhhhc-----C--ChhHHHHHHHHhcC
Q 005709 87 RKAFRQ-NNRSPDLLELSEEVAHYANGNPLALQVLGSSLYQK-SKEQWKDKLRKLKLI-----T--DPNIYKVLKISYDG 157 (681)
Q Consensus 87 ~~af~~-~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~L~~k-~~~~w~~~l~~l~~~-----~--~~~i~~~l~~sy~~ 157 (681)
+.||.. ....++..++|++|+++|+|+|||++++|+.|+.| +..||+.+.+.+... + .+.+..++++|||.
T Consensus 328 ~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~ 407 (889)
T KOG4658|consen 328 KKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDN 407 (889)
T ss_pred HhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhh
Confidence 999976 34456699999999999999999999999999995 788999999988664 2 35688999999999
Q ss_pred CCHHHHHHHhhhcccCCCCCHHHH----HHhhcCCC-----------chhhhHHHHhhccceeEeC-----CeEeehHHH
Q 005709 158 LNWEEKEIFLDVACFFKGEDVDFV----TRVQDDPT-----------SMHNGLNTLVEMSLITISA-----NRLQMHDIL 217 (681)
Q Consensus 158 L~~~~k~cfl~~a~Fp~~~~~~~~----~~i~~~~~-----------~~~~~~~~L~~~sli~~~~-----~~~~mHdll 217 (681)
||++.|.||+|||+||++++|+.. -||++|+. .+..++.+|+.++|+...+ .+|+|||+|
T Consensus 408 L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvv 487 (889)
T KOG4658|consen 408 LPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVV 487 (889)
T ss_pred hhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHH
Confidence 999999999999999999998763 35899973 3456699999999999874 689999999
Q ss_pred HHHHHHHhhhccccCCCceeecccCc-hhhHHhhcCcCCCcEEEEEeecCCCcccccCHHHhcCCCCCceEEEeCCCCCC
Q 005709 218 QELGKTIILQESFKEPGKRSKLWDHK-DVYQVLKKNKGTDAIEGIFFDLSKINYLHLSPQAFANMSSLTLLKFYMPECNG 296 (681)
Q Consensus 218 ~~~~~~i~~~e~~~~~~~~~~l~~~~-~~~~vl~~~~~~~~v~~l~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~ 296 (681)
+|||.+++.+....... .+.... ...+ .........++++++.........-. .+.++|++|-+..|.-
T Consensus 488 Re~al~ias~~~~~~e~---~iv~~~~~~~~-~~~~~~~~~~rr~s~~~~~~~~~~~~----~~~~~L~tLll~~n~~-- 557 (889)
T KOG4658|consen 488 REMALWIASDFGKQEEN---QIVSDGVGLSE-IPQVKSWNSVRRMSLMNNKIEHIAGS----SENPKLRTLLLQRNSD-- 557 (889)
T ss_pred HHHHHHHhccccccccc---eEEECCcCccc-cccccchhheeEEEEeccchhhccCC----CCCCccceEEEeecch--
Confidence 99999999855433322 111110 0011 11222345678888777665443222 2334799999887641
Q ss_pred CcccccccccCcc-ccccccCccEEEecCCC-CCCCCCCC-CCCCceEEEcCCCCcccccccccccccccccceecc---
Q 005709 297 VPIMSSKLHLNQD-LEYLPKKLRYLHWHEYP-LKTLPFSF-EPNYLIELNLPYSKVEQIWIGEKKAFKLKFINLYNS--- 370 (681)
Q Consensus 297 ~~~~~~~~~l~~~-l~~l~~~L~~L~l~~~~-l~~lp~~~-~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~~L~l--- 370 (681)
| ...++.. +..+ +.|++||+++|. +..+|..+ ++-+|++|+|+++.++.+|.++++ |+.|.+||+
T Consensus 558 ~-----l~~is~~ff~~m-~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~---Lk~L~~Lnl~~~ 628 (889)
T KOG4658|consen 558 W-----LLEISGEFFRSL-PLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGN---LKKLIYLNLEVT 628 (889)
T ss_pred h-----hhhcCHHHHhhC-cceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHH---HHhhheeccccc
Confidence 0 3455555 3445 789999999775 78899999 899999999999999999999999 999999999
Q ss_pred cCCcccCC-CCCCCCCcEEEcccCCCcc---cCccccCCCccceecccc
Q 005709 371 RYLTRLPE-FSEIPNLERINLSGSELER---LPATIKQFSQLRYLYLRN 415 (681)
Q Consensus 371 ~~l~~lp~-~~~l~~L~~L~L~~n~l~~---lp~~i~~L~~L~~L~L~~ 415 (681)
..+..+|. ...|++|++|.+.+..... .-..+.+|.+|+.|....
T Consensus 629 ~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 629 GRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred cccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 44455566 5569999999998544221 112345555666555544
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.93 E-value=2.2e-26 Score=239.22 Aligned_cols=169 Identities=31% Similarity=0.528 Sum_probs=136.3
Q ss_pred chHHHHHHhCCCeEEEEEECcChh--HHHhhcCCCCCCCCcEEEEEeCCchhhhccCC-ceEEEcCCCCHHHHHHHHHHH
Q 005709 12 ITPNIKKRLQQRKVLIVLDDVDDN--SKNFAGGLELFSPGSRIIITTRDKRLLDKRRV-ENVYEVKGLKHNSALELFCRK 88 (681)
Q Consensus 12 ~~~~i~~~L~~kr~LiVLDdv~~~--~~~l~~~~~~~~~gSrIivTTR~~~v~~~~~~-~~~~~l~~L~~~e~~~Lf~~~ 88 (681)
....+++.|+++++||||||||+. |+.+...++.+..||+||||||++.++..++. ...|++++|+++||++||.+.
T Consensus 90 ~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~ 169 (287)
T PF00931_consen 90 LQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKR 169 (287)
T ss_dssp HHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHH
T ss_pred ccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 778999999999999999999999 88888888777889999999999999987754 679999999999999999999
Q ss_pred hccCC-CCChhHHHHHHHHHHHcCCChhHHHHHHhhhcC-CCHHHHHHHHHHhhhcC------ChhHHHHHHHHhcCCCH
Q 005709 89 AFRQN-NRSPDLLELSEEVAHYANGNPLALQVLGSSLYQ-KSKEQWKDKLRKLKLIT------DPNIYKVLKISYDGLNW 160 (681)
Q Consensus 89 af~~~-~~~~~~~~~~~~i~~~c~GlPLai~~~g~~L~~-k~~~~w~~~l~~l~~~~------~~~i~~~l~~sy~~L~~ 160 (681)
++... ...+...+.+++|+++|+|+||||+++|++|+. .+..+|+.+++++.... ...+..++.+||+.||+
T Consensus 170 ~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~ 249 (287)
T PF00931_consen 170 AGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPD 249 (287)
T ss_dssp HTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCCc
Confidence 98765 334556778999999999999999999999965 36789999998876543 46799999999999999
Q ss_pred HHHHHHhhhcccCCCCCHHH
Q 005709 161 EEKEIFLDVACFFKGEDVDF 180 (681)
Q Consensus 161 ~~k~cfl~~a~Fp~~~~~~~ 180 (681)
+.|+||+|||+||.++.++.
T Consensus 250 ~~~~~f~~L~~f~~~~~i~~ 269 (287)
T PF00931_consen 250 ELRRCFLYLSIFPEGVPIPR 269 (287)
T ss_dssp CCHHHHHHGGGSGTTS-EEH
T ss_pred cHHHHHhhCcCCCCCceECH
Confidence 99999999999999988654
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.84 E-value=5.8e-21 Score=231.29 Aligned_cols=265 Identities=16% Similarity=0.146 Sum_probs=181.9
Q ss_pred ccCCCceeecccCc-hhhHHhhcCc-CCCcEEEEEeecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccC
Q 005709 230 FKEPGKRSKLWDHK-DVYQVLKKNK-GTDAIEGIFFDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLN 307 (681)
Q Consensus 230 ~~~~~~~~~l~~~~-~~~~vl~~~~-~~~~v~~l~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 307 (681)
+.+|+++.+.|... +.|.+..... ....|+.+. ++.+......+.+|..+++|+.|++++|.+ .+.+|
T Consensus 41 ~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~--L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~--------~~~ip 110 (968)
T PLN00113 41 INDPLKYLSNWNSSADVCLWQGITCNNSSRVVSID--LSGKNISGKISSAIFRLPYIQTINLSNNQL--------SGPIP 110 (968)
T ss_pred CCCCcccCCCCCCCCCCCcCcceecCCCCcEEEEE--ecCCCccccCChHHhCCCCCCEEECCCCcc--------CCcCC
Confidence 34566667778643 4444322221 133455544 444443444577899999999999999886 56778
Q ss_pred ccccccccCccEEEecCCCCCCCCCCCCCCCceEEEcCCCCcc-cccccccccccccccceecc--cCC-cccCC-CCCC
Q 005709 308 QDLEYLPKKLRYLHWHEYPLKTLPFSFEPNYLIELNLPYSKVE-QIWIGEKKAFKLKFINLYNS--RYL-TRLPE-FSEI 382 (681)
Q Consensus 308 ~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~~L~l--~~l-~~lp~-~~~l 382 (681)
..+....++|++|++++|.+....+...+++|++|+|++|.+. .+|..+++ +++|++|++ +.+ ..+|. ++++
T Consensus 111 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~---l~~L~~L~L~~n~l~~~~p~~~~~l 187 (968)
T PLN00113 111 DDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGS---FSSLKVLDLGGNVLVGKIPNSLTNL 187 (968)
T ss_pred hHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhc---CCCCCEEECccCcccccCChhhhhC
Confidence 7766333789999999988765333335778888888888886 56777777 888888888 443 35665 8888
Q ss_pred CCCcEEEcccCCCc-ccCccccCCCccceeccccccccCcCCCC---CCCCCEEeccCCCCCcccCCCCC---CccEEec
Q 005709 383 PNLERINLSGSELE-RLPATIKQFSQLRYLYLRNCNMLQSLPEL---PLLLSHLDASNCKRLQSLPEISS---CLEELDI 455 (681)
Q Consensus 383 ~~L~~L~L~~n~l~-~lp~~i~~L~~L~~L~L~~c~~l~~lp~~---l~~L~~L~l~~c~~l~~lp~~~~---~L~~L~l 455 (681)
++|++|+|++|.+. .+|..++++++|++|++++|+..+.+|.. +++|++|++++|...+.+|..++ +|+.|++
T Consensus 188 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 267 (968)
T PLN00113 188 TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL 267 (968)
T ss_pred cCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEEC
Confidence 88888888877766 56777888888888888887666667754 67788888888766666776554 7788888
Q ss_pred ccccccccccccccCCCCCcEEEccCCc----------------cccccccccCh---HHHHHhhHHHHHH
Q 005709 456 SILEKLSKTTFPIKHGCSLMQFEFQNCW----------------ELKENKILEDS---ELRIQHMAIASLR 507 (681)
Q Consensus 456 ~~n~l~~~~~~~l~~l~~L~~L~l~~c~----------------~L~l~~~~l~~---~~i~~l~~L~~L~ 507 (681)
++|.+.+..+..+.++++|+.|++++|. .|++++|.+.+ ..+..+++|+.|+
T Consensus 268 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 338 (968)
T PLN00113 268 YQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQ 338 (968)
T ss_pred cCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEE
Confidence 8887765444337777788888777764 34555555543 4455555555544
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.78 E-value=2.1e-20 Score=196.93 Aligned_cols=233 Identities=20% Similarity=0.263 Sum_probs=189.4
Q ss_pred cEEEEEeecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCC--CCCCCC
Q 005709 257 AIEGIFFDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLK--TLPFSF 334 (681)
Q Consensus 257 ~v~~l~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~--~lp~~~ 334 (681)
.++-+.|+-.+.. ..|+.++.+.+|..|.+.+|++ ..+...+..+ +.||.+.+..|+++ .+|+.+
T Consensus 33 ~~~WLkLnrt~L~---~vPeEL~~lqkLEHLs~~HN~L---------~~vhGELs~L-p~LRsv~~R~N~LKnsGiP~di 99 (1255)
T KOG0444|consen 33 QMTWLKLNRTKLE---QVPEELSRLQKLEHLSMAHNQL---------ISVHGELSDL-PRLRSVIVRDNNLKNSGIPTDI 99 (1255)
T ss_pred heeEEEechhhhh---hChHHHHHHhhhhhhhhhhhhh---------Hhhhhhhccc-hhhHHHhhhccccccCCCCchh
Confidence 4555555554432 3477888888888888888873 5556667777 67999999999877 488886
Q ss_pred -CCCCceEEEcCCCCcccccccccccccccccceecc--cCCcccCC--CCCCCCCcEEEcccCCCcccCccccCCCccc
Q 005709 335 -EPNYLIELNLPYSKVEQIWIGEKKAFKLKFINLYNS--RYLTRLPE--FSEIPNLERINLSGSELERLPATIKQFSQLR 409 (681)
Q Consensus 335 -~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~~L~l--~~l~~lp~--~~~l~~L~~L~L~~n~l~~lp~~i~~L~~L~ 409 (681)
.+..|..||||+|++++.|..+.. -+++-+|+| |++..||. |.+++.|-+||||+|.+..+|+.+..|..|+
T Consensus 100 F~l~dLt~lDLShNqL~EvP~~LE~---AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~Lq 176 (1255)
T KOG0444|consen 100 FRLKDLTILDLSHNQLREVPTNLEY---AKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQ 176 (1255)
T ss_pred cccccceeeecchhhhhhcchhhhh---hcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhh
Confidence 999999999999999999999888 889999999 88999996 8899999999999999999999999999999
Q ss_pred eeccccccc----cCcCCCCCCCCCEEeccCCC-CCcccCCCCC---CccEEecccccccccccccccCCCCCcEEEccC
Q 005709 410 YLYLRNCNM----LQSLPELPLLLSHLDASNCK-RLQSLPEISS---CLEELDISILEKLSKTTFPIKHGCSLMQFEFQN 481 (681)
Q Consensus 410 ~L~L~~c~~----l~~lp~~l~~L~~L~l~~c~-~l~~lp~~~~---~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 481 (681)
+|.|++|.. ++.+|. +++|+.|.+++-+ -+..+|..+. +|..++++.|++..+|.. +.++.+|+.|+|++
T Consensus 177 tL~Ls~NPL~hfQLrQLPs-mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPec-ly~l~~LrrLNLS~ 254 (1255)
T KOG0444|consen 177 TLKLSNNPLNHFQLRQLPS-MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPEC-LYKLRNLRRLNLSG 254 (1255)
T ss_pred hhhcCCChhhHHHHhcCcc-chhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHH-HhhhhhhheeccCc
Confidence 999998653 355665 6788888888743 3556777665 889999999999988888 88899999999998
Q ss_pred Cc---------------cccccccccCh--HHHHHhhHHHHHH
Q 005709 482 CW---------------ELKENKILEDS--ELRIQHMAIASLR 507 (681)
Q Consensus 482 c~---------------~L~l~~~~l~~--~~i~~l~~L~~L~ 507 (681)
|. .|++|.|+++. +.+.+|++|+.|.
T Consensus 255 N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy 297 (1255)
T KOG0444|consen 255 NKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLY 297 (1255)
T ss_pred CceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHH
Confidence 86 67888888775 7778888888775
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.78 E-value=4.4e-19 Score=214.95 Aligned_cols=233 Identities=18% Similarity=0.169 Sum_probs=160.8
Q ss_pred eecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCC-CCCCCC-CCCCce
Q 005709 263 FDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLK-TLPFSF-EPNYLI 340 (681)
Q Consensus 263 l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~-~lp~~~-~l~~L~ 340 (681)
|+++.+......+..|.++++|++|++++|.+ .+.+|..+..+ ++|++|++++|.+. .+|..+ .+++|+
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l--------~~~~p~~~~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 215 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL--------VGKIPNSLTNL-TSLEFLTLASNQLVGQIPRELGQMKSLK 215 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcc--------cccCChhhhhC-cCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence 34444443334566777888888888887765 55667777776 67888888888766 366666 778888
Q ss_pred EEEcCCCCcc-cccccccccccccccceecc--cCCc-ccCC-CCCCCCCcEEEcccCCCc-ccCccccCCCccceeccc
Q 005709 341 ELNLPYSKVE-QIWIGEKKAFKLKFINLYNS--RYLT-RLPE-FSEIPNLERINLSGSELE-RLPATIKQFSQLRYLYLR 414 (681)
Q Consensus 341 ~L~L~~n~l~-~lp~~~~~l~~L~~L~~L~l--~~l~-~lp~-~~~l~~L~~L~L~~n~l~-~lp~~i~~L~~L~~L~L~ 414 (681)
+|+|++|.+. .+|..+.. +++|++|++ +.+. .+|. ++++++|++|+++.|.+. .+|.+++++++|+.|+++
T Consensus 216 ~L~L~~n~l~~~~p~~l~~---l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 292 (968)
T PLN00113 216 WIYLGYNNLSGEIPYEIGG---LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLS 292 (968)
T ss_pred EEECcCCccCCcCChhHhc---CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECc
Confidence 8888888776 56777776 778888888 4443 5664 778888888888877765 567778888888888888
Q ss_pred cccccCcCCCC---CCCCCEEeccCCCCCcccCCCCC---CccEEecccccccccccccccCCCCCcEEEccCCc-----
Q 005709 415 NCNMLQSLPEL---PLLLSHLDASNCKRLQSLPEISS---CLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCW----- 483 (681)
Q Consensus 415 ~c~~l~~lp~~---l~~L~~L~l~~c~~l~~lp~~~~---~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~----- 483 (681)
+|...+.+|.. +++|+.|++++|...+.+|..+. +|+.|++++|.+.+..+..++.+++|+.|++++|.
T Consensus 293 ~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~ 372 (968)
T PLN00113 293 DNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI 372 (968)
T ss_pred CCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeC
Confidence 77665666654 67788888877766666666544 77788888887765444447777788888877664
Q ss_pred -----------cccccccccCh---HHHHHhhHHHHHH
Q 005709 484 -----------ELKENKILEDS---ELRIQHMAIASLR 507 (681)
Q Consensus 484 -----------~L~l~~~~l~~---~~i~~l~~L~~L~ 507 (681)
.|++++|.+.+ ..+..+++|+.|+
T Consensus 373 p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ 410 (968)
T PLN00113 373 PEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVR 410 (968)
T ss_pred ChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEE
Confidence 34555565544 4455566665554
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.71 E-value=1.6e-18 Score=181.96 Aligned_cols=162 Identities=22% Similarity=0.234 Sum_probs=75.0
Q ss_pred EeecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCcccc-ccccCccEEEecCCCCCCC-CCCC-CCCC
Q 005709 262 FFDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLE-YLPKKLRYLHWHEYPLKTL-PFSF-EPNY 338 (681)
Q Consensus 262 ~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~-~l~~~L~~L~l~~~~l~~l-p~~~-~l~~ 338 (681)
.|+++.++...+....|.++.+|-+|.|+.|.. ..+|...+ .+ ++|+.|+|..|.+..+ -..| ++.+
T Consensus 177 ~L~La~N~It~l~~~~F~~lnsL~tlkLsrNri---------ttLp~r~Fk~L-~~L~~LdLnrN~irive~ltFqgL~S 246 (873)
T KOG4194|consen 177 KLNLASNRITTLETGHFDSLNSLLTLKLSRNRI---------TTLPQRSFKRL-PKLESLDLNRNRIRIVEGLTFQGLPS 246 (873)
T ss_pred EEeeccccccccccccccccchheeeecccCcc---------cccCHHHhhhc-chhhhhhccccceeeehhhhhcCchh
Confidence 344444444444444444444555555554442 23332222 23 3445555555544433 1223 4444
Q ss_pred ceEEEcCCCCcccccccccccccccccceecc--cCCcccCC--CCCCCCCcEEEcccCCCcccC-ccccCCCccceecc
Q 005709 339 LIELNLPYSKVEQIWIGEKKAFKLKFINLYNS--RYLTRLPE--FSEIPNLERINLSGSELERLP-ATIKQFSQLRYLYL 413 (681)
Q Consensus 339 L~~L~L~~n~l~~lp~~~~~l~~L~~L~~L~l--~~l~~lp~--~~~l~~L~~L~L~~n~l~~lp-~~i~~L~~L~~L~L 413 (681)
|+.|.|..|.|..+-+|... .+.++++|+| |++..+.. +-+++.|+.|+||.|.|..+. .+....++|+.|+|
T Consensus 247 l~nlklqrN~I~kL~DG~Fy--~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdL 324 (873)
T KOG4194|consen 247 LQNLKLQRNDISKLDDGAFY--GLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDL 324 (873)
T ss_pred hhhhhhhhcCcccccCccee--eecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEec
Confidence 55555555555444433221 2455555555 44444442 445555555555555555442 23444455555555
Q ss_pred ccccccCcCCCC----CCCCCEEeccC
Q 005709 414 RNCNMLQSLPEL----PLLLSHLDASN 436 (681)
Q Consensus 414 ~~c~~l~~lp~~----l~~L~~L~l~~ 436 (681)
++ +.+.++|+. +..|+.|+|+.
T Consensus 325 s~-N~i~~l~~~sf~~L~~Le~LnLs~ 350 (873)
T KOG4194|consen 325 SS-NRITRLDEGSFRVLSQLEELNLSH 350 (873)
T ss_pred cc-cccccCChhHHHHHHHhhhhcccc
Confidence 55 445555544 55555555555
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.70 E-value=5.8e-19 Score=186.12 Aligned_cols=207 Identities=18% Similarity=0.265 Sum_probs=112.3
Q ss_pred EEEEEeecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCC--C
Q 005709 258 IEGIFFDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSF--E 335 (681)
Q Consensus 258 v~~l~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~--~ 335 (681)
+|.+.+..+..+...+++ .+..|..|..|+|++|. ....|.++++- +++-+|+|++|++.+||..+ +
T Consensus 80 LRsv~~R~N~LKnsGiP~-diF~l~dLt~lDLShNq---------L~EvP~~LE~A-Kn~iVLNLS~N~IetIPn~lfin 148 (1255)
T KOG0444|consen 80 LRSVIVRDNNLKNSGIPT-DIFRLKDLTILDLSHNQ---------LREVPTNLEYA-KNSIVLNLSYNNIETIPNSLFIN 148 (1255)
T ss_pred hHHHhhhccccccCCCCc-hhcccccceeeecchhh---------hhhcchhhhhh-cCcEEEEcccCccccCCchHHHh
Confidence 333333333333334443 34467778888888777 35566666665 67777777777777777763 7
Q ss_pred CCCceEEEcCCCCcccccccccccccccccceecc--cCCcc--cCCCCCCCCCcEEEcccCCC--cccCccccCCCccc
Q 005709 336 PNYLIELNLPYSKVEQIWIGEKKAFKLKFINLYNS--RYLTR--LPEFSEIPNLERINLSGSEL--ERLPATIKQFSQLR 409 (681)
Q Consensus 336 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~~L~l--~~l~~--lp~~~~l~~L~~L~L~~n~l--~~lp~~i~~L~~L~ 409 (681)
+.-|-+||||+|.++.+|+.+.. |.+|+.|.| |.+.. +..+..+++|++|.+++++= ..+|.++..|.+|.
T Consensus 149 LtDLLfLDLS~NrLe~LPPQ~RR---L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~ 225 (1255)
T KOG0444|consen 149 LTDLLFLDLSNNRLEMLPPQIRR---LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLR 225 (1255)
T ss_pred hHhHhhhccccchhhhcCHHHHH---HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhh
Confidence 77777777777777777777666 666666666 21111 11122344444444543332 24555555555555
Q ss_pred eeccccccccCcCCCC---CCCCCEEeccCCCCCcccCCCCC---CccEEecccccccccccccccCCCCCcEEEccC
Q 005709 410 YLYLRNCNMLQSLPEL---PLLLSHLDASNCKRLQSLPEISS---CLEELDISILEKLSKTTFPIKHGCSLMQFEFQN 481 (681)
Q Consensus 410 ~L~L~~c~~l~~lp~~---l~~L~~L~l~~c~~l~~lp~~~~---~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 481 (681)
.+++|. +.+..+|+. +.+|+.|+||+ +.++.+....+ +|++|+++.|+++.+|.. +..|+.|+.|.+.+
T Consensus 226 dvDlS~-N~Lp~vPecly~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~a-vcKL~kL~kLy~n~ 300 (1255)
T KOG0444|consen 226 DVDLSE-NNLPIVPECLYKLRNLRRLNLSG-NKITELNMTEGEWENLETLNLSRNQLTVLPDA-VCKLTKLTKLYANN 300 (1255)
T ss_pred hccccc-cCCCcchHHHhhhhhhheeccCc-CceeeeeccHHHHhhhhhhccccchhccchHH-HhhhHHHHHHHhcc
Confidence 555553 444444443 44555555555 23443333222 555555555555555544 44455554444433
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.69 E-value=3.2e-17 Score=172.34 Aligned_cols=208 Identities=18% Similarity=0.159 Sum_probs=116.3
Q ss_pred EEeecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCC-C-CCCC
Q 005709 261 IFFDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFS-F-EPNY 338 (681)
Q Consensus 261 l~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~ 338 (681)
-.||++++...++....|.++++|+.+++..|.+ ..+|...... .+|+.|+|.+|.++++... + .+..
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~L---------t~IP~f~~~s-ghl~~L~L~~N~I~sv~se~L~~l~a 150 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNEL---------TRIPRFGHES-GHLEKLDLRHNLISSVTSEELSALPA 150 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchh---------hhcccccccc-cceeEEeeeccccccccHHHHHhHhh
Confidence 3588888888889999999999999999999885 3344333222 4566666666665555443 2 4555
Q ss_pred ceEEEcCCCCcccccccccccccccccceecc--cCCcccCC--CCCCCCCcEEEcccCCCcccCcc-ccCCCccceecc
Q 005709 339 LIELNLPYSKVEQIWIGEKKAFKLKFINLYNS--RYLTRLPE--FSEIPNLERINLSGSELERLPAT-IKQFSQLRYLYL 413 (681)
Q Consensus 339 L~~L~L~~n~l~~lp~~~~~l~~L~~L~~L~l--~~l~~lp~--~~~l~~L~~L~L~~n~l~~lp~~-i~~L~~L~~L~L 413 (681)
|+.|||+.|.|+.+|..-.. .=.++++|+| |.++.+.. |.++.+|.+|.|+.|.++.+|.- |.+|++|+.|+|
T Consensus 151 lrslDLSrN~is~i~~~sfp--~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdL 228 (873)
T KOG4194|consen 151 LRSLDLSRNLISEIPKPSFP--AKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDL 228 (873)
T ss_pred hhhhhhhhchhhcccCCCCC--CCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhc
Confidence 56666666666555433211 1245555565 55555542 55555666666666666655543 444666666666
Q ss_pred ccccccCcCCCC----CCCCCEEeccCCCCCcccCCCCC----CccEEecccccccccccccccCCCCCcEEEccCC
Q 005709 414 RNCNMLQSLPEL----PLLLSHLDASNCKRLQSLPEISS----CLEELDISILEKLSKTTFPIKHGCSLMQFEFQNC 482 (681)
Q Consensus 414 ~~c~~l~~lp~~----l~~L~~L~l~~c~~l~~lp~~~~----~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c 482 (681)
.. +.++..... +++|+.|.+.. +.+..+-++.. +++.|+|+.|.+..+...++.+|+.|+.|+++.|
T Consensus 229 nr-N~irive~ltFqgL~Sl~nlklqr-N~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N 303 (873)
T KOG4194|consen 229 NR-NRIRIVEGLTFQGLPSLQNLKLQR-NDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN 303 (873)
T ss_pred cc-cceeeehhhhhcCchhhhhhhhhh-cCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchh
Confidence 55 333332211 44555555544 23444443322 4555555555555554444555555555555444
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.67 E-value=4.1e-16 Score=190.09 Aligned_cols=101 Identities=31% Similarity=0.484 Sum_probs=88.8
Q ss_pred CCCCcEEEcc-cCCCcccCccccCCCccceeccccccccCcCCCC--CCCCCEEeccCCCCCcccCCCCCCccEEecccc
Q 005709 382 IPNLERINLS-GSELERLPATIKQFSQLRYLYLRNCNMLQSLPEL--PLLLSHLDASNCKRLQSLPEISSCLEELDISIL 458 (681)
Q Consensus 382 l~~L~~L~L~-~n~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~--l~~L~~L~l~~c~~l~~lp~~~~~L~~L~l~~n 458 (681)
.++|+.|+|+ ++.+.++|.+++++++|+.|++++|+.++.+|.. +++|+.|++++|+.+..+|....+|+.|+|++|
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n 856 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRT 856 (1153)
T ss_pred cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCC
Confidence 3578888888 4467789999999999999999999999999976 789999999999999999988789999999999
Q ss_pred cccccccccccCCCCCcEEEccCCc
Q 005709 459 EKLSKTTFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 459 ~l~~~~~~~l~~l~~L~~L~l~~c~ 483 (681)
.++++|.+ +..+++|+.|++++|+
T Consensus 857 ~i~~iP~s-i~~l~~L~~L~L~~C~ 880 (1153)
T PLN03210 857 GIEEVPWW-IEKFSNLSFLDMNGCN 880 (1153)
T ss_pred CCccChHH-HhcCCCCCEEECCCCC
Confidence 99998887 8888888888888876
No 11
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=1.3e-17 Score=150.17 Aligned_cols=151 Identities=26% Similarity=0.317 Sum_probs=135.1
Q ss_pred cCccEEEecCCCCCCCCCCC-CCCCceEEEcCCCCcccccccccccccccccceecc--cCCcccCC-CCCCCCCcEEEc
Q 005709 315 KKLRYLHWHEYPLKTLPFSF-EPNYLIELNLPYSKVEQIWIGEKKAFKLKFINLYNS--RYLTRLPE-FSEIPNLERINL 390 (681)
Q Consensus 315 ~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~~L~l--~~l~~lp~-~~~l~~L~~L~L 390 (681)
..++.|.++.|.++.+|+.+ ++.+|+.|++.+|+|+++|.++.. |++|+.|++ +.+..+|. ||.++.|+.|||
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~iss---l~klr~lnvgmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISS---LPKLRILNVGMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhh---chhhhheecchhhhhcCccccCCCchhhhhhc
Confidence 56788889999999999998 999999999999999999999988 999999999 88999996 999999999999
Q ss_pred ccCCCc--ccCccccCCCccceeccccccccCcCCCC---CCCCCEEeccCCCCCcccCCCCC---CccEEecccccccc
Q 005709 391 SGSELE--RLPATIKQFSQLRYLYLRNCNMLQSLPEL---PLLLSHLDASNCKRLQSLPEISS---CLEELDISILEKLS 462 (681)
Q Consensus 391 ~~n~l~--~lp~~i~~L~~L~~L~L~~c~~l~~lp~~---l~~L~~L~l~~c~~l~~lp~~~~---~L~~L~l~~n~l~~ 462 (681)
++|++. .+|..|..++.|+-|+|++ +..+.+|.. +++|+.|.+.. +.+-++|..++ .|++|++++|.+.-
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrd-ndll~lpkeig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRD-NDLLSLPKEIGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeecc-CchhhCcHHHHHHHHHHHHhcccceeee
Confidence 988887 5898899999999999999 678888876 88999999988 46778999888 89999999999999
Q ss_pred cccccccCC
Q 005709 463 KTTFPIKHG 471 (681)
Q Consensus 463 ~~~~~l~~l 471 (681)
+|+. ++++
T Consensus 188 lppe-l~~l 195 (264)
T KOG0617|consen 188 LPPE-LANL 195 (264)
T ss_pred cChh-hhhh
Confidence 9998 6543
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.62 E-value=1e-17 Score=169.18 Aligned_cols=196 Identities=21% Similarity=0.223 Sum_probs=129.9
Q ss_pred CHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCC-CCCCceEEEcCCCCcccc
Q 005709 274 SPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSF-EPNYLIELNLPYSKVEQI 352 (681)
Q Consensus 274 ~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~l 352 (681)
.|++++.+..++.|+.++|+. ..+|+.+..+ .+|+.|+.+.|.+..+|+.+ .+..|..|+..+|++..+
T Consensus 83 lp~aig~l~~l~~l~vs~n~l---------s~lp~~i~s~-~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~sl 152 (565)
T KOG0472|consen 83 LPAAIGELEALKSLNVSHNKL---------SELPEQIGSL-ISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSL 152 (565)
T ss_pred CCHHHHHHHHHHHhhcccchH---------hhccHHHhhh-hhhhhhhccccceeecCchHHHHhhhhhhhccccccccC
Confidence 355667777777777777763 4455555555 45555555555555555555 555555555555555555
Q ss_pred cccccccc--------------------cccccceecc--cCCcccCC-CCCCCCCcEEEcccCCCcccCccccCCCccc
Q 005709 353 WIGEKKAF--------------------KLKFINLYNS--RYLTRLPE-FSEIPNLERINLSGSELERLPATIKQFSQLR 409 (681)
Q Consensus 353 p~~~~~l~--------------------~L~~L~~L~l--~~l~~lp~-~~~l~~L~~L~L~~n~l~~lp~~i~~L~~L~ 409 (681)
|.++.++. +++.|+.+|+ +-++.+|. ++.+.+|+.|+|..|.+..+| +|+.+..|+
T Consensus 153 p~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~ 231 (565)
T KOG0472|consen 153 PEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLK 231 (565)
T ss_pred chHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHH
Confidence 55554410 0455555555 55555554 555666666666655665555 455555566
Q ss_pred eeccccccccCcCCCC----CCCCCEEeccCCCCCcccCCCCC---CccEEecccccccccccccccCCCCCcEEEccCC
Q 005709 410 YLYLRNCNMLQSLPEL----PLLLSHLDASNCKRLQSLPEISS---CLEELDISILEKLSKTTFPIKHGCSLMQFEFQNC 482 (681)
Q Consensus 410 ~L~L~~c~~l~~lp~~----l~~L~~L~l~~c~~l~~lp~~~~---~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c 482 (681)
.|.++. +.++.+|.. +++|..||+.+ ++++++|..+. +|+.|++++|.++++|.+ ++++ .|+.|-+.+|
T Consensus 232 Elh~g~-N~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSNN~is~Lp~s-Lgnl-hL~~L~leGN 307 (565)
T KOG0472|consen 232 ELHVGE-NQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSNNDISSLPYS-LGNL-HLKFLALEGN 307 (565)
T ss_pred HHHhcc-cHHHhhHHHHhcccccceeeeccc-cccccCchHHHHhhhhhhhcccCCccccCCcc-cccc-eeeehhhcCC
Confidence 666555 445555544 78999999999 68999999877 899999999999999999 9999 8999988888
Q ss_pred cc
Q 005709 483 WE 484 (681)
Q Consensus 483 ~~ 484 (681)
+-
T Consensus 308 Pl 309 (565)
T KOG0472|consen 308 PL 309 (565)
T ss_pred ch
Confidence 73
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.62 E-value=4.7e-15 Score=168.91 Aligned_cols=237 Identities=25% Similarity=0.268 Sum_probs=144.0
Q ss_pred eecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCCCCCCceEE
Q 005709 263 FDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSFEPNYLIEL 342 (681)
Q Consensus 263 l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L 342 (681)
|+++.+....+++ .+. ++|+.|.+.+|++ ..+|. +|++|++|++++|.++.+|.. +.+|+.|
T Consensus 206 LdLs~~~LtsLP~-~l~--~~L~~L~L~~N~L---------t~LP~----lp~~Lk~LdLs~N~LtsLP~l--p~sL~~L 267 (788)
T PRK15387 206 LNVGESGLTTLPD-CLP--AHITTLVIPDNNL---------TSLPA----LPPELRTLEVSGNQLTSLPVL--PPGLLEL 267 (788)
T ss_pred EEcCCCCCCcCCc-chh--cCCCEEEccCCcC---------CCCCC----CCCCCcEEEecCCccCcccCc--cccccee
Confidence 4555554444433 333 4789999998885 33443 357899999999999988864 4678888
Q ss_pred EcCCCCcccccccccccccccccceecc--cCCcccCCCCCCCCCcEEEcccCCCcccCccccCCCccceeccccccccC
Q 005709 343 NLPYSKVEQIWIGEKKAFKLKFINLYNS--RYLTRLPEFSEIPNLERINLSGSELERLPATIKQFSQLRYLYLRNCNMLQ 420 (681)
Q Consensus 343 ~L~~n~l~~lp~~~~~l~~L~~L~~L~l--~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~~i~~L~~L~~L~L~~c~~l~ 420 (681)
++++|.++.+|.. +.+|+.|++ |.++.+|. .+++|+.|++++|+++.+|... .+|+.|++++ +.++
T Consensus 268 ~Ls~N~L~~Lp~l------p~~L~~L~Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~-N~L~ 335 (788)
T PRK15387 268 SIFSNPLTHLPAL------PSGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLASLPALP---SELCKLWAYN-NQLT 335 (788)
T ss_pred eccCCchhhhhhc------hhhcCEEECcCCccccccc--cccccceeECCCCccccCCCCc---cccccccccc-Cccc
Confidence 8888888887753 445666777 77777775 2467888888877887776532 2455566666 3455
Q ss_pred cCCCCCCCCCEEeccCCCCCcccCCCCCCccEEecccccccccccccccCCCCCcEEEccCCc------------ccccc
Q 005709 421 SLPELPLLLSHLDASNCKRLQSLPEISSCLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCW------------ELKEN 488 (681)
Q Consensus 421 ~lp~~l~~L~~L~l~~c~~l~~lp~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~------------~L~l~ 488 (681)
.+|..+.+|+.|++++ +.+..+|..+.+|+.|++++|.+..+|.. .++|+.|++++|. .|+++
T Consensus 336 ~LP~lp~~Lq~LdLS~-N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l----~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS 410 (788)
T PRK15387 336 SLPTLPSGLQELSVSD-NQLASLPTLPSELYKLWAYNNRLTSLPAL----PSGLKELIVSGNRLTSLPVLPSELKELMVS 410 (788)
T ss_pred cccccccccceEecCC-CccCCCCCCCcccceehhhccccccCccc----ccccceEEecCCcccCCCCcccCCCEEEcc
Confidence 6666555666666666 35556665555666666666666665542 2345566665553 34555
Q ss_pred ccccCh-HHHHHhhHHHHHHHHHhhccCCCCeEEccCCCCCccccccccCCeEEEeCCCcCc
Q 005709 489 KILEDS-ELRIQHMAIASLRLFYEKEQLYCPSILLPGSEIPKWFAFQNIGPLIALQLPEHCL 549 (681)
Q Consensus 489 ~~~l~~-~~i~~l~~L~~L~~~~~~~~~~~~~~~l~G~~iP~w~~~~~~g~~~~i~l~~~~~ 549 (681)
+|.+.. +. ...+|+.|+...+. + +.+|+.|.... +...+.|..|.+
T Consensus 411 ~N~LssIP~--l~~~L~~L~Ls~Nq---------L--t~LP~sl~~L~--~L~~LdLs~N~L 457 (788)
T PRK15387 411 GNRLTSLPM--LPSGLLSLSVYRNQ---------L--TRLPESLIHLS--SETTVNLEGNPL 457 (788)
T ss_pred CCcCCCCCc--chhhhhhhhhccCc---------c--cccChHHhhcc--CCCeEECCCCCC
Confidence 555543 11 12344444432222 2 15777665444 344566666644
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.60 E-value=4.2e-18 Score=171.84 Aligned_cols=226 Identities=20% Similarity=0.228 Sum_probs=183.7
Q ss_pred ecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCC-CCCCceEE
Q 005709 264 DLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSF-EPNYLIEL 342 (681)
Q Consensus 264 ~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L 342 (681)
.++.+.... ..+.+.++..|.+|.+.+|. ...+|+.+..+ ..++.|+.+.|.++.+|+.+ .+.+|+.|
T Consensus 51 ils~N~l~~-l~~dl~nL~~l~vl~~~~n~---------l~~lp~aig~l-~~l~~l~vs~n~ls~lp~~i~s~~~l~~l 119 (565)
T KOG0472|consen 51 ILSHNDLEV-LREDLKNLACLTVLNVHDNK---------LSQLPAAIGEL-EALKSLNVSHNKLSELPEQIGSLISLVKL 119 (565)
T ss_pred hhccCchhh-ccHhhhcccceeEEEeccch---------hhhCCHHHHHH-HHHHHhhcccchHhhccHHHhhhhhhhhh
Confidence 344443333 33456889999999999998 57888888888 78999999999999999998 99999999
Q ss_pred EcCCCCcccccccccccccccccceecc--cCCcccCC-CCCCCCCcEEEcccCCCcccCccccCCCccceecccccccc
Q 005709 343 NLPYSKVEQIWIGEKKAFKLKFINLYNS--RYLTRLPE-FSEIPNLERINLSGSELERLPATIKQFSQLRYLYLRNCNML 419 (681)
Q Consensus 343 ~L~~n~l~~lp~~~~~l~~L~~L~~L~l--~~l~~lp~-~~~l~~L~~L~L~~n~l~~lp~~i~~L~~L~~L~L~~c~~l 419 (681)
+.++|.+..+|++++. +-.|..++. +++..+|. ++++.+|..|++.+|++..+|+..-+++.|++|+... +.+
T Consensus 120 ~~s~n~~~el~~~i~~---~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~-N~L 195 (565)
T KOG0472|consen 120 DCSSNELKELPDSIGR---LLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS-NLL 195 (565)
T ss_pred hccccceeecCchHHH---HhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccch-hhh
Confidence 9999999999999998 888888887 88888886 8888899999999999999988877799999999887 788
Q ss_pred CcCCCC---CCCCCEEeccCCCCCcccCCCCC--CccEEecccccccccccccccCCCCCcEEEccCCc-----------
Q 005709 420 QSLPEL---PLLLSHLDASNCKRLQSLPEISS--CLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCW----------- 483 (681)
Q Consensus 420 ~~lp~~---l~~L~~L~l~~c~~l~~lp~~~~--~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~----------- 483 (681)
+++|+. +.+|+.|++.. +++..+|+..+ .|.+|++..|.++.+|.....++++|..||+++|+
T Consensus 196 ~tlP~~lg~l~~L~~LyL~~-Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clL 274 (565)
T KOG0472|consen 196 ETLPPELGGLESLELLYLRR-NKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLL 274 (565)
T ss_pred hcCChhhcchhhhHHHHhhh-cccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHh
Confidence 999987 66777777877 57888886665 78888888888888888755688888888888876
Q ss_pred ----cccccccccCh--HHHHHhhHHHHH
Q 005709 484 ----ELKENKILEDS--ELRIQHMAIASL 506 (681)
Q Consensus 484 ----~L~l~~~~l~~--~~i~~l~~L~~L 506 (681)
+||+++|.+++ .+++++ +|++|
T Consensus 275 rsL~rLDlSNN~is~Lp~sLgnl-hL~~L 302 (565)
T KOG0472|consen 275 RSLERLDLSNNDISSLPYSLGNL-HLKFL 302 (565)
T ss_pred hhhhhhcccCCccccCCcccccc-eeeeh
Confidence 67888887765 455555 44443
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.56 E-value=1.2e-14 Score=165.58 Aligned_cols=189 Identities=25% Similarity=0.287 Sum_probs=100.0
Q ss_pred CCCCceEEEeCCCCCCCccccccc-c--cC----ccccccccCccEEEecCCCCCCCCCCCCCCCceEEEcCCCCccccc
Q 005709 281 MSSLTLLKFYMPECNGVPIMSSKL-H--LN----QDLEYLPKKLRYLHWHEYPLKTLPFSFEPNYLIELNLPYSKVEQIW 353 (681)
Q Consensus 281 l~~L~~L~l~~n~~~~~~~~~~~~-~--l~----~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~lp 353 (681)
+++|++|++++|.+..++...... . +. ..+..+|.+|+.|++++|.++.+|.. +++|++|+|++|+++.+|
T Consensus 241 p~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~--p~~L~~LdLS~N~L~~Lp 318 (788)
T PRK15387 241 PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVL--PPGLQELSVSDNQLASLP 318 (788)
T ss_pred CCCCcEEEecCCccCcccCcccccceeeccCCchhhhhhchhhcCEEECcCCcccccccc--ccccceeECCCCccccCC
Confidence 578999999988875443211000 0 00 01122345667777777777777653 467888888888888776
Q ss_pred ccccccccccccceecc--cCCcccCCCCCCCCCcEEEcccCCCcccCccccCC-----------------Cccceeccc
Q 005709 354 IGEKKAFKLKFINLYNS--RYLTRLPEFSEIPNLERINLSGSELERLPATIKQF-----------------SQLRYLYLR 414 (681)
Q Consensus 354 ~~~~~l~~L~~L~~L~l--~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~~i~~L-----------------~~L~~L~L~ 414 (681)
... .+|+.|++ +.++.+|.+ ..+|++|+|++|+|+.+|....++ .+|+.|+++
T Consensus 319 ~lp------~~L~~L~Ls~N~L~~LP~l--p~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs 390 (788)
T PRK15387 319 ALP------SELCKLWAYNNQLTSLPTL--PSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVS 390 (788)
T ss_pred CCc------ccccccccccCcccccccc--ccccceEecCCCccCCCCCCCcccceehhhccccccCcccccccceEEec
Confidence 532 23444444 555555542 135666777666666666432111 234444444
Q ss_pred cccccCcCCCCCCCCCEEeccCCCCCcccCCCCCCccEEecccccccccccccccCCCCCcEEEccCC
Q 005709 415 NCNMLQSLPELPLLLSHLDASNCKRLQSLPEISSCLEELDISILEKLSKTTFPIKHGCSLMQFEFQNC 482 (681)
Q Consensus 415 ~c~~l~~lp~~l~~L~~L~l~~c~~l~~lp~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c 482 (681)
+ +.+..+|..+++|+.|++++| .+..+|..+.+|+.|++++|.++.+|.. +.++++|+.|++++|
T Consensus 391 ~-N~Lt~LP~l~s~L~~LdLS~N-~LssIP~l~~~L~~L~Ls~NqLt~LP~s-l~~L~~L~~LdLs~N 455 (788)
T PRK15387 391 G-NRLTSLPVLPSELKELMVSGN-RLTSLPMLPSGLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGN 455 (788)
T ss_pred C-CcccCCCCcccCCCEEEccCC-cCCCCCcchhhhhhhhhccCcccccChH-HhhccCCCeEECCCC
Confidence 4 234444444444555555543 3444444434555555555555555544 555555555544443
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.55 E-value=1.7e-14 Score=165.29 Aligned_cols=178 Identities=21% Similarity=0.283 Sum_probs=145.3
Q ss_pred CCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCCCCCCceEEEcCCCCccccccccccccc
Q 005709 282 SSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSFEPNYLIELNLPYSKVEQIWIGEKKAFK 361 (681)
Q Consensus 282 ~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~ 361 (681)
++|+.|++++|.+ ..+|..+ +++|++|++++|.++.+|..+ ..+|+.|+|++|++..+|..+
T Consensus 199 ~~L~~L~Ls~N~L---------tsLP~~l---~~nL~~L~Ls~N~LtsLP~~l-~~~L~~L~Ls~N~L~~LP~~l----- 260 (754)
T PRK15370 199 EQITTLILDNNEL---------KSLPENL---QGNIKTLYANSNQLTSIPATL-PDTIQEMELSINRITELPERL----- 260 (754)
T ss_pred cCCcEEEecCCCC---------CcCChhh---ccCCCEEECCCCccccCChhh-hccccEEECcCCccCcCChhH-----
Confidence 5799999999885 3455543 358999999999999999766 247999999999999998765
Q ss_pred ccccceecc--cCCcccCC-CCCCCCCcEEEcccCCCcccCccccCCCccceeccccccccCcCCCC-CCCCCEEeccCC
Q 005709 362 LKFINLYNS--RYLTRLPE-FSEIPNLERINLSGSELERLPATIKQFSQLRYLYLRNCNMLQSLPEL-PLLLSHLDASNC 437 (681)
Q Consensus 362 L~~L~~L~l--~~l~~lp~-~~~l~~L~~L~L~~n~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~-l~~L~~L~l~~c 437 (681)
..+|+.|++ +.+..+|+ +. ++|+.|++++|+++.+|..+. ++|+.|++++ +.+..+|.. +++|+.|++++|
T Consensus 261 ~s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~-N~Lt~LP~~l~~sL~~L~Ls~N 335 (754)
T PRK15370 261 PSALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQS-NSLTALPETLPPGLKTLEAGEN 335 (754)
T ss_pred hCCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcC-CccccCCccccccceeccccCC
Confidence 357899999 88888886 53 589999999999999987654 4799999998 567788864 678999999996
Q ss_pred CCCcccCCCCC-CccEEecccccccccccccccCCCCCcEEEccCCcccc
Q 005709 438 KRLQSLPEISS-CLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCWELK 486 (681)
Q Consensus 438 ~~l~~lp~~~~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~~L~ 486 (681)
.+..+|..+. +|+.|++++|.+..+|.. + .++|+.|++++|.--.
T Consensus 336 -~Lt~LP~~l~~sL~~L~Ls~N~L~~LP~~-l--p~~L~~LdLs~N~Lt~ 381 (754)
T PRK15370 336 -ALTSLPASLPPELQVLDVSKNQITVLPET-L--PPTITTLDVSRNALTN 381 (754)
T ss_pred -ccccCChhhcCcccEEECCCCCCCcCChh-h--cCCcCEEECCCCcCCC
Confidence 5777887766 999999999999988875 4 3689999998886433
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.54 E-value=1.1e-14 Score=166.84 Aligned_cols=195 Identities=19% Similarity=0.248 Sum_probs=117.0
Q ss_pred cEEEEEeecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCCCC
Q 005709 257 AIEGIFFDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSFEP 336 (681)
Q Consensus 257 ~v~~l~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l 336 (681)
.++.+.+. .+....++...+ ++|+.|++++|.+. .+|.. ++++|+.|++++|.+..+|..+ .
T Consensus 200 ~L~~L~Ls--~N~LtsLP~~l~---~nL~~L~Ls~N~Lt---------sLP~~---l~~~L~~L~Ls~N~L~~LP~~l-~ 261 (754)
T PRK15370 200 QITTLILD--NNELKSLPENLQ---GNIKTLYANSNQLT---------SIPAT---LPDTIQEMELSINRITELPERL-P 261 (754)
T ss_pred CCcEEEec--CCCCCcCChhhc---cCCCEEECCCCccc---------cCChh---hhccccEEECcCCccCcCChhH-h
Confidence 34444444 443334443332 58999999988752 34433 2356777777777777777655 2
Q ss_pred CCceEEEcCCCCcccccccccccccccccceecc--cCCcccCC-CCCCCCCcEEEcccCCCcccCccccCCCccceecc
Q 005709 337 NYLIELNLPYSKVEQIWIGEKKAFKLKFINLYNS--RYLTRLPE-FSEIPNLERINLSGSELERLPATIKQFSQLRYLYL 413 (681)
Q Consensus 337 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~~L~l--~~l~~lp~-~~~l~~L~~L~L~~n~l~~lp~~i~~L~~L~~L~L 413 (681)
.+|+.|++++|+++.+|..+ ..+|+.|++ |.++.+|. +. ++|+.|++++|.++.+|..+. ++|+.|++
T Consensus 262 s~L~~L~Ls~N~L~~LP~~l-----~~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~L 332 (754)
T PRK15370 262 SALQSLDLFHNKISCLPENL-----PEELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPETLP--PGLKTLEA 332 (754)
T ss_pred CCCCEEECcCCccCcccccc-----CCCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCcccc--ccceeccc
Confidence 46777777777777776644 246777777 66666664 32 356666777666666665443 46666666
Q ss_pred ccccccCcCCCC-CCCCCEEeccCCCCCcccCCCCC-CccEEecccccccccccccccCCCCCcEEEccCCc
Q 005709 414 RNCNMLQSLPEL-PLLLSHLDASNCKRLQSLPEISS-CLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 414 ~~c~~l~~lp~~-l~~L~~L~l~~c~~l~~lp~~~~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~ 483 (681)
++| .+..+|.. +++|+.|++++| .+..+|..+. +|+.|++++|.+..+|+. +. .+|+.|++++|.
T Consensus 333 s~N-~Lt~LP~~l~~sL~~L~Ls~N-~L~~LP~~lp~~L~~LdLs~N~Lt~LP~~-l~--~sL~~LdLs~N~ 399 (754)
T PRK15370 333 GEN-ALTSLPASLPPELQVLDVSKN-QITVLPETLPPTITTLDVSRNALTNLPEN-LP--AALQIMQASRNN 399 (754)
T ss_pred cCC-ccccCChhhcCcccEEECCCC-CCCcCChhhcCCcCEEECCCCcCCCCCHh-HH--HHHHHHhhccCC
Confidence 664 35556644 456666666664 3455665444 666666666666666654 32 245555555543
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.49 E-value=5e-16 Score=139.94 Aligned_cols=157 Identities=25% Similarity=0.338 Sum_probs=125.0
Q ss_pred hcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCC-CCCCceEEEcCCCCcccccccc
Q 005709 278 FANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSF-EPNYLIELNLPYSKVEQIWIGE 356 (681)
Q Consensus 278 f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~lp~~~ 356 (681)
+.+|++...|.+++|. ...+|+.+..+ .+|+.|++.+|+++.+|..+ .++.|+.|++.-|.+..+|.++
T Consensus 29 Lf~~s~ITrLtLSHNK---------l~~vppnia~l-~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgf 98 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNK---------LTVVPPNIAEL-KNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGF 98 (264)
T ss_pred ccchhhhhhhhcccCc---------eeecCCcHHHh-hhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCcccc
Confidence 3467777888888887 46677788887 78888888888888888888 8888888888888888888888
Q ss_pred cccccccccceecc--cCCc--ccCC-CCCCCCCcEEEcccCCCcccCccccCCCccceeccccccccCcCCCC---CCC
Q 005709 357 KKAFKLKFINLYNS--RYLT--RLPE-FSEIPNLERINLSGSELERLPATIKQFSQLRYLYLRNCNMLQSLPEL---PLL 428 (681)
Q Consensus 357 ~~l~~L~~L~~L~l--~~l~--~lp~-~~~l~~L~~L~L~~n~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~---l~~ 428 (681)
+. ++-|..||+ +++. .+|. |-.++.|+.|+|+.|.++-+|+.+++|++|+.|.+++ +.+-++|.. ++.
T Consensus 99 gs---~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrd-ndll~lpkeig~lt~ 174 (264)
T KOG0617|consen 99 GS---FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRD-NDLLSLPKEIGDLTR 174 (264)
T ss_pred CC---CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeecc-CchhhCcHHHHHHHH
Confidence 88 888888888 5554 4675 7778888888888888888888888888888888888 556777866 778
Q ss_pred CCEEeccCCCCCcccCCCCCC
Q 005709 429 LSHLDASNCKRLQSLPEISSC 449 (681)
Q Consensus 429 L~~L~l~~c~~l~~lp~~~~~ 449 (681)
|+.|.+.+ +.+..+|..+++
T Consensus 175 lrelhiqg-nrl~vlppel~~ 194 (264)
T KOG0617|consen 175 LRELHIQG-NRLTVLPPELAN 194 (264)
T ss_pred HHHHhccc-ceeeecChhhhh
Confidence 88888888 567778877664
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.44 E-value=8.8e-15 Score=162.05 Aligned_cols=214 Identities=21% Similarity=0.203 Sum_probs=152.0
Q ss_pred EeecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCC-CCCCce
Q 005709 262 FFDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSF-EPNYLI 340 (681)
Q Consensus 262 ~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~ 340 (681)
+++.+.+....++ ..+..+.+|..|...+|.+ ..+|..+... .+|++|....|.++.+|+.. .++.|+
T Consensus 245 ~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l---------~~lp~ri~~~-~~L~~l~~~~nel~yip~~le~~~sL~ 313 (1081)
T KOG0618|consen 245 YLDISHNNLSNLP-EWIGACANLEALNANHNRL---------VALPLRISRI-TSLVSLSAAYNELEYIPPFLEGLKSLR 313 (1081)
T ss_pred eeecchhhhhcch-HHHHhcccceEecccchhH---------HhhHHHHhhh-hhHHHHHhhhhhhhhCCCcccccceee
Confidence 3444444444333 6777778888888877764 4444444444 56666666666666666665 466666
Q ss_pred EEEcCCCCccccccccccc-----------------------ccccccceecc--cCCc--ccCCCCCCCCCcEEEcccC
Q 005709 341 ELNLPYSKVEQIWIGEKKA-----------------------FKLKFINLYNS--RYLT--RLPEFSEIPNLERINLSGS 393 (681)
Q Consensus 341 ~L~L~~n~l~~lp~~~~~l-----------------------~~L~~L~~L~l--~~l~--~lp~~~~l~~L~~L~L~~n 393 (681)
+|+|..|+|..+|..+... ..+..|+.|.+ |.++ .+|-+-++++|+.|+|++|
T Consensus 314 tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN 393 (1081)
T KOG0618|consen 314 TLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN 393 (1081)
T ss_pred eeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc
Confidence 6666666666655432110 12445556666 4444 3566788999999999999
Q ss_pred CCcccCcc-ccCCCccceeccccccccCcCCCC---CCCCCEEeccCCCCCcccCCCCC--CccEEeccccccccccccc
Q 005709 394 ELERLPAT-IKQFSQLRYLYLRNCNMLQSLPEL---PLLLSHLDASNCKRLQSLPEISS--CLEELDISILEKLSKTTFP 467 (681)
Q Consensus 394 ~l~~lp~~-i~~L~~L~~L~L~~c~~l~~lp~~---l~~L~~L~l~~c~~l~~lp~~~~--~L~~L~l~~n~l~~~~~~~ 467 (681)
.+.++|.+ +.++..|+.|+||| ++++.+|.. +..|++|...+ +.+..+|+... .|+.+|++.|+++.+....
T Consensus 394 rL~~fpas~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahs-N~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~ 471 (1081)
T KOG0618|consen 394 RLNSFPASKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHS-NQLLSFPELAQLPQLKVLDLSCNNLSEVTLPE 471 (1081)
T ss_pred ccccCCHHHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcC-CceeechhhhhcCcceEEecccchhhhhhhhh
Confidence 99999987 89999999999999 789999976 78899999887 57889997654 9999999999998655432
Q ss_pred ccCCCCCcEEEccCCcccccc
Q 005709 468 IKHGCSLMQFEFQNCWELKEN 488 (681)
Q Consensus 468 l~~l~~L~~L~l~~c~~L~l~ 488 (681)
-...++|++|++++|..+.+.
T Consensus 472 ~~p~p~LkyLdlSGN~~l~~d 492 (1081)
T KOG0618|consen 472 ALPSPNLKYLDLSGNTRLVFD 492 (1081)
T ss_pred hCCCcccceeeccCCcccccc
Confidence 223379999999999876654
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.38 E-value=6.1e-14 Score=155.50 Aligned_cols=172 Identities=22% Similarity=0.262 Sum_probs=124.6
Q ss_pred cccCccEEEecCCCCCCCCCCC-CCCCceEEEcCCCCcccccccccccccccccceecc--cCCcccCC-CCCCCCCcEE
Q 005709 313 LPKKLRYLHWHEYPLKTLPFSF-EPNYLIELNLPYSKVEQIWIGEKKAFKLKFINLYNS--RYLTRLPE-FSEIPNLERI 388 (681)
Q Consensus 313 l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~~L~l--~~l~~lp~-~~~l~~L~~L 388 (681)
.|.+|++++++.|.++.+|+++ .+.+|+.|+..+|++..+|..+.. ..+|+.|.+ +.+..+|. ..++++|++|
T Consensus 239 ~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~---~~~L~~l~~~~nel~yip~~le~~~sL~tL 315 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISR---ITSLVSLSAAYNELEYIPPFLEGLKSLRTL 315 (1081)
T ss_pred ccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhh---hhhHHHHHhhhhhhhhCCCcccccceeeee
Confidence 4577888888888888888666 788888888888888888877776 777777777 77777776 4557777777
Q ss_pred EcccCCCcccCcc--------------------------------------------------ccCCCccceeccccccc
Q 005709 389 NLSGSELERLPAT--------------------------------------------------IKQFSQLRYLYLRNCNM 418 (681)
Q Consensus 389 ~L~~n~l~~lp~~--------------------------------------------------i~~L~~L~~L~L~~c~~ 418 (681)
+|..|+|..+|+. +.+..+|+.|+|++ +.
T Consensus 316 dL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-Nr 394 (1081)
T KOG0618|consen 316 DLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY-NR 394 (1081)
T ss_pred eehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc-cc
Confidence 7777777666542 22456667777776 55
Q ss_pred cCcCCCC----CCCCCEEeccCCCCCcccCCCCC---CccEEecccccccccccccccCCCCCcEEEccCCc--------
Q 005709 419 LQSLPEL----PLLLSHLDASNCKRLQSLPEISS---CLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCW-------- 483 (681)
Q Consensus 419 l~~lp~~----l~~L~~L~l~~c~~l~~lp~~~~---~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~-------- 483 (681)
+.++|.. +..|+.|+||| +.++.+|..+. .|+.|...+|.+...| . +..++.|+.+|++.|.
T Consensus 395 L~~fpas~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e-~~~l~qL~~lDlS~N~L~~~~l~~ 471 (1081)
T KOG0618|consen 395 LNSFPASKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHSNQLLSFP-E-LAQLPQLKVLDLSCNNLSEVTLPE 471 (1081)
T ss_pred cccCCHHHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcCCceeech-h-hhhcCcceEEecccchhhhhhhhh
Confidence 6666665 56667777777 46777775543 6777777777777777 3 7888888888888775
Q ss_pred --------cccccccc
Q 005709 484 --------ELKENKIL 491 (681)
Q Consensus 484 --------~L~l~~~~ 491 (681)
.||+++|.
T Consensus 472 ~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 472 ALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hCCCcccceeeccCCc
Confidence 67777776
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.18 E-value=8.4e-13 Score=133.83 Aligned_cols=213 Identities=15% Similarity=0.129 Sum_probs=141.8
Q ss_pred cEEEEEeecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCC-C-
Q 005709 257 AIEGIFFDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFS-F- 334 (681)
Q Consensus 257 ~v~~l~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~- 334 (681)
....|.||.+.+ ..+++.+|+.+++||.|+|++|.+ ...-|..+..++.-++.+..++|.|+.+|.. |
T Consensus 68 ~tveirLdqN~I--~~iP~~aF~~l~~LRrLdLS~N~I--------s~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~ 137 (498)
T KOG4237|consen 68 ETVEIRLDQNQI--SSIPPGAFKTLHRLRRLDLSKNNI--------SFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFG 137 (498)
T ss_pred cceEEEeccCCc--ccCChhhccchhhhceecccccch--------hhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence 344455555544 558899999999999999999986 4455667777755455566666889999987 4
Q ss_pred CCCCceEEEcCCCCccccc-ccccccccccccceecc--cCCcccCC--CCCCCCCcEEEcccCCCc-------------
Q 005709 335 EPNYLIELNLPYSKVEQIW-IGEKKAFKLKFINLYNS--RYLTRLPE--FSEIPNLERINLSGSELE------------- 396 (681)
Q Consensus 335 ~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~~L~l--~~l~~lp~--~~~l~~L~~L~L~~n~l~------------- 396 (681)
+|..|+.|.+.-|++.-++ ..+.. |++|..|.+ +.+..++. |..+.+++++.+.-|.+.
T Consensus 138 gL~slqrLllNan~i~Cir~~al~d---L~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a 214 (498)
T KOG4237|consen 138 GLSSLQRLLLNANHINCIRQDALRD---LPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLA 214 (498)
T ss_pred hHHHHHHHhcChhhhcchhHHHHHH---hhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHh
Confidence 8888888888888887554 34555 777777777 77777774 777888888877744421
Q ss_pred ccCccccCCCccceecc-------------------------ccccccCcCCCC----CCCCCEEeccCCCCCcccCCCC
Q 005709 397 RLPATIKQFSQLRYLYL-------------------------RNCNMLQSLPEL----PLLLSHLDASNCKRLQSLPEIS 447 (681)
Q Consensus 397 ~lp~~i~~L~~L~~L~L-------------------------~~c~~l~~lp~~----l~~L~~L~l~~c~~l~~lp~~~ 447 (681)
..|..++......-..+ +.|......|.. +++|++|++++ +.+..+-+..
T Consensus 215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn-N~i~~i~~~a 293 (498)
T KOG4237|consen 215 MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN-NKITRIEDGA 293 (498)
T ss_pred hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC-Cccchhhhhh
Confidence 12222332222222222 122222222221 77888888887 4566554432
Q ss_pred C----CccEEecccccccccccccccCCCCCcEEEccCCc
Q 005709 448 S----CLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 448 ~----~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~ 483 (681)
. .+++|+|..|.+..+....|.++.+|+.|+|.+|+
T Consensus 294 Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~ 333 (498)
T KOG4237|consen 294 FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQ 333 (498)
T ss_pred hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCe
Confidence 2 78888888888888777778888888888888776
No 22
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.11 E-value=2.1e-12 Score=136.53 Aligned_cols=158 Identities=23% Similarity=0.243 Sum_probs=79.1
Q ss_pred EEEecCCCCCCCCCCC-CCCCceEEEcCCCCcccccccccccccccccceecc--cCCcccCC-CCCCCCCcEEEcccCC
Q 005709 319 YLHWHEYPLKTLPFSF-EPNYLIELNLPYSKVEQIWIGEKKAFKLKFINLYNS--RYLTRLPE-FSEIPNLERINLSGSE 394 (681)
Q Consensus 319 ~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~~L~l--~~l~~lp~-~~~l~~L~~L~L~~n~ 394 (681)
..|++.|.+..+|..+ .+..|+.|.|..|.+..+|..+++ |..|.++|+ |.+..+|. +..++ |+.|-+++|+
T Consensus 79 ~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~---L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 79 FADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICN---LEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhh---hhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc
Confidence 3444555555555444 444445555555555555555554 555555555 44444554 33333 5555555555
Q ss_pred CcccCccccCCCccceeccccccccCcCCCC---CCCCCEEeccCCCCCcccCCCCC--CccEEeccccccccccccccc
Q 005709 395 LERLPATIKQFSQLRYLYLRNCNMLQSLPEL---PLLLSHLDASNCKRLQSLPEISS--CLEELDISILEKLSKTTFPIK 469 (681)
Q Consensus 395 l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~---l~~L~~L~l~~c~~l~~lp~~~~--~L~~L~l~~n~l~~~~~~~l~ 469 (681)
++.+|..++.+..|..|+.+. +.+.++|.. +.+|+.|++.. +.+..+|+.+. .|..||+++|++..+|.. |.
T Consensus 155 l~~lp~~ig~~~tl~~ld~s~-nei~slpsql~~l~slr~l~vrR-n~l~~lp~El~~LpLi~lDfScNkis~iPv~-fr 231 (722)
T KOG0532|consen 155 LTSLPEEIGLLPTLAHLDVSK-NEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEELCSLPLIRLDFSCNKISYLPVD-FR 231 (722)
T ss_pred cccCCcccccchhHHHhhhhh-hhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHHHhCCceeeeecccCceeecchh-hh
Confidence 555555555555555555554 334444443 44444445544 23444444444 455555555555555555 55
Q ss_pred CCCCCcEEEccCCc
Q 005709 470 HGCSLMQFEFQNCW 483 (681)
Q Consensus 470 ~l~~L~~L~l~~c~ 483 (681)
+|+.|++|-|.+|+
T Consensus 232 ~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 232 KMRHLQVLQLENNP 245 (722)
T ss_pred hhhhheeeeeccCC
Confidence 55555555555443
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.06 E-value=1.5e-11 Score=124.94 Aligned_cols=108 Identities=21% Similarity=0.319 Sum_probs=57.4
Q ss_pred cccCccEEEecCCCCCCCCCC-C-CCCCceEEEcCCCCcccc-cccccccccccccceecc---cCCcccCC--CCCCCC
Q 005709 313 LPKKLRYLHWHEYPLKTLPFS-F-EPNYLIELNLPYSKVEQI-WIGEKKAFKLKFINLYNS---RYLTRLPE--FSEIPN 384 (681)
Q Consensus 313 l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~~L~l---~~l~~lp~--~~~l~~ 384 (681)
+|..-..++|..|.|+.||+. | .+++|+.|||++|+|+.+ |..++. |.+|..|-+ +.++.+|. |+++..
T Consensus 65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~G---L~~l~~Lvlyg~NkI~~l~k~~F~gL~s 141 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKG---LASLLSLVLYGNNKITDLPKGAFGGLSS 141 (498)
T ss_pred CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhh---hHhhhHHHhhcCCchhhhhhhHhhhHHH
Confidence 345555556666666666555 3 556666666666666554 444444 444444433 55555553 555555
Q ss_pred CcEEEcccCCCcccCcc-ccCCCccceeccccccccCcCCC
Q 005709 385 LERINLSGSELERLPAT-IKQFSQLRYLYLRNCNMLQSLPE 424 (681)
Q Consensus 385 L~~L~L~~n~l~~lp~~-i~~L~~L~~L~L~~c~~l~~lp~ 424 (681)
|+.|.+.-|++..++.. +..|++|..|.+.+ +.+++++.
T Consensus 142 lqrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~ 181 (498)
T KOG4237|consen 142 LQRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICK 181 (498)
T ss_pred HHHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhcc
Confidence 55555555555544432 55555555555555 33444443
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.96 E-value=2.7e-11 Score=128.25 Aligned_cols=185 Identities=23% Similarity=0.271 Sum_probs=118.4
Q ss_pred CCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCC-CCCCceEEEcCCCCccccccccccc
Q 005709 281 MSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSF-EPNYLIELNLPYSKVEQIWIGEKKA 359 (681)
Q Consensus 281 l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~lp~~~~~l 359 (681)
+.--...+++.|.+ ..+|..+..+ ..|..|.+..|.+..+|..+ ++..|++|+|+.|++..+|..++.
T Consensus 74 ltdt~~aDlsrNR~---------~elp~~~~~f-~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~- 142 (722)
T KOG0532|consen 74 LTDTVFADLSRNRF---------SELPEEACAF-VSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCD- 142 (722)
T ss_pred ccchhhhhcccccc---------ccCchHHHHH-HHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhc-
Confidence 33344555565553 3344444444 45666666667777777666 677777777777777777776665
Q ss_pred ccccccceecc--cCCcccCC-CCCCCCCcEEEcccCCCcccCccccCCCccceeccccccccCcCCCCCC--CCCEEec
Q 005709 360 FKLKFINLYNS--RYLTRLPE-FSEIPNLERINLSGSELERLPATIKQFSQLRYLYLRNCNMLQSLPELPL--LLSHLDA 434 (681)
Q Consensus 360 ~~L~~L~~L~l--~~l~~lp~-~~~l~~L~~L~L~~n~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~--~L~~L~l 434 (681)
|+ |+.|-+ |+++.+|+ ++.+++|..||.++|.+..+|+.++.|.+|+.|+++. +.+..+|+.+. .|..||+
T Consensus 143 --lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR-n~l~~lp~El~~LpLi~lDf 218 (722)
T KOG0532|consen 143 --LP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEELCSLPLIRLDF 218 (722)
T ss_pred --Cc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHHHhCCceeeeec
Confidence 33 555555 66677775 7777777777777777777777777777777777777 55666666633 3566777
Q ss_pred cCCCCCcccCCCCC---CccEEecccccccccccccccC---CCCCcEEEccCC
Q 005709 435 SNCKRLQSLPEISS---CLEELDISILEKLSKTTFPIKH---GCSLMQFEFQNC 482 (681)
Q Consensus 435 ~~c~~l~~lp~~~~---~L~~L~l~~n~l~~~~~~~l~~---l~~L~~L~l~~c 482 (681)
+. |++..+|-.+. .|++|.|.+|.+.+.|.. +.- ..=.++|+..-|
T Consensus 219 Sc-Nkis~iPv~fr~m~~Lq~l~LenNPLqSPPAq-IC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 219 SC-NKISYLPVDFRKMRHLQVLQLENNPLQSPPAQ-ICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred cc-CceeecchhhhhhhhheeeeeccCCCCCChHH-HHhccceeeeeeecchhc
Confidence 54 57777777655 777777888877776665 322 222345555555
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.91 E-value=4.5e-10 Score=118.42 Aligned_cols=200 Identities=19% Similarity=0.141 Sum_probs=99.3
Q ss_pred HhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCC-CCCCC-CC---CCceEEEcCCCCccc
Q 005709 277 AFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKT-LPFSF-EP---NYLIELNLPYSKVEQ 351 (681)
Q Consensus 277 ~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~-lp~~~-~l---~~L~~L~L~~n~l~~ 351 (681)
.+...++|+.|+++++..... ......++..+..+ ++|+.|++++|.+.. .+..+ .+ ++|++|++++|.+..
T Consensus 46 ~l~~~~~l~~l~l~~~~~~~~--~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~ 122 (319)
T cd00116 46 ALRPQPSLKELCLSLNETGRI--PRGLQSLLQGLTKG-CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGD 122 (319)
T ss_pred HHhhCCCceEEeccccccCCc--chHHHHHHHHHHhc-CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccch
Confidence 344555566666655442100 00011222333333 456666666666553 22222 22 236666666666542
Q ss_pred -----ccccccccccc-cccceecc--cCCc-----ccCC-CCCCCCCcEEEcccCCCc-----ccCccccCCCccceec
Q 005709 352 -----IWIGEKKAFKL-KFINLYNS--RYLT-----RLPE-FSEIPNLERINLSGSELE-----RLPATIKQFSQLRYLY 412 (681)
Q Consensus 352 -----lp~~~~~l~~L-~~L~~L~l--~~l~-----~lp~-~~~l~~L~~L~L~~n~l~-----~lp~~i~~L~~L~~L~ 412 (681)
+...+.. + ++|+.|++ +.++ .++. +..+++|++|++++|.++ .++..+..+++|+.|+
T Consensus 123 ~~~~~l~~~l~~---~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~ 199 (319)
T cd00116 123 RGLRLLAKGLKD---LPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLD 199 (319)
T ss_pred HHHHHHHHHHHh---CCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEe
Confidence 1222222 4 56666666 3333 2222 455666777777766665 2334455556777777
Q ss_pred cccccccC----cC---CCCCCCCCEEeccCCCCCc----c----cCCCCCCccEEecccccccc-----cccccccCCC
Q 005709 413 LRNCNMLQ----SL---PELPLLLSHLDASNCKRLQ----S----LPEISSCLEELDISILEKLS-----KTTFPIKHGC 472 (681)
Q Consensus 413 L~~c~~l~----~l---p~~l~~L~~L~l~~c~~l~----~----lp~~~~~L~~L~l~~n~l~~-----~~~~~l~~l~ 472 (681)
+++|..-. .+ ...+++|++|++++|.... . ++.....|++|++++|.++. +... +..++
T Consensus 200 L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~-~~~~~ 278 (319)
T cd00116 200 LNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEV-LAEKE 278 (319)
T ss_pred ccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHH-HhcCC
Confidence 77654210 11 1125667777777764221 1 11112377777877777651 2222 44556
Q ss_pred CCcEEEccCCc
Q 005709 473 SLMQFEFQNCW 483 (681)
Q Consensus 473 ~L~~L~l~~c~ 483 (681)
+|++|++++|.
T Consensus 279 ~L~~l~l~~N~ 289 (319)
T cd00116 279 SLLELDLRGNK 289 (319)
T ss_pred CccEEECCCCC
Confidence 77777776654
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.90 E-value=2.9e-10 Score=119.85 Aligned_cols=197 Identities=20% Similarity=0.130 Sum_probs=133.0
Q ss_pred HHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccc--cCccEEEecCCCCCC-----CCCCC-CC-CCceEEEcC
Q 005709 275 PQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLP--KKLRYLHWHEYPLKT-----LPFSF-EP-NYLIELNLP 345 (681)
Q Consensus 275 ~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~--~~L~~L~l~~~~l~~-----lp~~~-~l-~~L~~L~L~ 345 (681)
+..+..+++|+.|++++|.+ ....+..+..++ ++|++|++++|.+.. +...+ .+ ++|++|+++
T Consensus 74 ~~~l~~~~~L~~L~l~~~~~--------~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~ 145 (319)
T cd00116 74 LQGLTKGCGLQELDLSDNAL--------GPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLG 145 (319)
T ss_pred HHHHHhcCceeEEEccCCCC--------ChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcC
Confidence 46778899999999998775 223333343332 349999999998773 22233 45 789999999
Q ss_pred CCCcc-----cccccccccccccccceecc--cCCc-----ccCC-CCCCCCCcEEEcccCCCc-----ccCccccCCCc
Q 005709 346 YSKVE-----QIWIGEKKAFKLKFINLYNS--RYLT-----RLPE-FSEIPNLERINLSGSELE-----RLPATIKQFSQ 407 (681)
Q Consensus 346 ~n~l~-----~lp~~~~~l~~L~~L~~L~l--~~l~-----~lp~-~~~l~~L~~L~L~~n~l~-----~lp~~i~~L~~ 407 (681)
+|.++ .++..+.. +++|+.|++ +.++ .++. +..+++|+.|++++|.++ .++..+..+++
T Consensus 146 ~n~l~~~~~~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~ 222 (319)
T cd00116 146 RNRLEGASCEALAKALRA---NRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKS 222 (319)
T ss_pred CCcCCchHHHHHHHHHHh---CCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCC
Confidence 99887 23334444 778999998 5554 2332 556689999999988876 34556778899
Q ss_pred cceeccccccccCc---------CCCCCCCCCEEeccCCCCC----cccCCC---CCCccEEeccccccccccc----cc
Q 005709 408 LRYLYLRNCNMLQS---------LPELPLLLSHLDASNCKRL----QSLPEI---SSCLEELDISILEKLSKTT----FP 467 (681)
Q Consensus 408 L~~L~L~~c~~l~~---------lp~~l~~L~~L~l~~c~~l----~~lp~~---~~~L~~L~l~~n~l~~~~~----~~ 467 (681)
|++|++++|. +.. ++...+.|+.|++++|... ..++.. ..+|+.+++++|.+...+. ..
T Consensus 223 L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~ 301 (319)
T cd00116 223 LEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES 301 (319)
T ss_pred CCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH
Confidence 9999999965 332 1111378999999998532 122222 2489999999999885422 11
Q ss_pred ccCC-CCCcEEEccCCc
Q 005709 468 IKHG-CSLMQFEFQNCW 483 (681)
Q Consensus 468 l~~l-~~L~~L~l~~c~ 483 (681)
+... +.|+.|++.+++
T Consensus 302 ~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 302 LLEPGNELESLWVKDDS 318 (319)
T ss_pred HhhcCCchhhcccCCCC
Confidence 3334 678888776653
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.88 E-value=1.8e-09 Score=117.59 Aligned_cols=169 Identities=27% Similarity=0.331 Sum_probs=138.6
Q ss_pred cCccEEEecCCCCCCCCCCC-CCC-CceEEEcCCCCcccccccccccccccccceecc--cCCcccCC-CCCCCCCcEEE
Q 005709 315 KKLRYLHWHEYPLKTLPFSF-EPN-YLIELNLPYSKVEQIWIGEKKAFKLKFINLYNS--RYLTRLPE-FSEIPNLERIN 389 (681)
Q Consensus 315 ~~L~~L~l~~~~l~~lp~~~-~l~-~L~~L~L~~n~l~~lp~~~~~l~~L~~L~~L~l--~~l~~lp~-~~~l~~L~~L~ 389 (681)
+.++.|++.+|.++.+|+.. .+. +|+.|++++|.+..+|..+.. +++|+.|++ +.+..+|. .+.+++|+.|+
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~---l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRN---LPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhc---cccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 57999999999999999988 443 899999999999999877888 999999999 88999997 44999999999
Q ss_pred cccCCCcccCccccCCCccceeccccccccCcCCCC--CCCCCEEeccCCCCCcccCCCCC---CccEEecccccccccc
Q 005709 390 LSGSELERLPATIKQFSQLRYLYLRNCNMLQSLPEL--PLLLSHLDASNCKRLQSLPEISS---CLEELDISILEKLSKT 464 (681)
Q Consensus 390 L~~n~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~--l~~L~~L~l~~c~~l~~lp~~~~---~L~~L~l~~n~l~~~~ 464 (681)
+++|.+..+|..++.+..|++|.++++..+..+... +.++..|.+.+ +.+..+|..++ +++.|++++|.++.++
T Consensus 193 ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~ 271 (394)
T COG4886 193 LSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN-NKLEDLPESIGNLSNLETLDLSNNQISSIS 271 (394)
T ss_pred ccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCC-ceeeeccchhccccccceeccccccccccc
Confidence 999999999998888888999999985433333322 66777777666 45555455444 7999999999999998
Q ss_pred cccccCCCCCcEEEccCCccccccc
Q 005709 465 TFPIKHGCSLMQFEFQNCWELKENK 489 (681)
Q Consensus 465 ~~~l~~l~~L~~L~l~~c~~L~l~~ 489 (681)
. ++.+.+|+.|+++++...+...
T Consensus 272 ~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 272 S--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred c--ccccCccCEEeccCccccccch
Confidence 7 8899999999999987655543
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.76 E-value=5.7e-09 Score=113.59 Aligned_cols=178 Identities=23% Similarity=0.307 Sum_probs=144.4
Q ss_pred HHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCC-CCCCceEEEcCCCCccccc
Q 005709 275 PQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSF-EPNYLIELNLPYSKVEQIW 353 (681)
Q Consensus 275 ~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~lp 353 (681)
......++.++.|.+.+|.. ..++.....+..+|+.|++++|.+..+|..+ .+++|+.|++++|++..+|
T Consensus 109 ~~~~~~~~~l~~L~l~~n~i---------~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~ 179 (394)
T COG4886 109 ISELLELTNLTSLDLDNNNI---------TDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLP 179 (394)
T ss_pred chhhhcccceeEEecCCccc---------ccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhh
Confidence 34455668899999998874 5556555544128999999999999998776 9999999999999999999
Q ss_pred ccccccccccccceecc--cCCcccCC-CCCCCCCcEEEcccCCCcccCccccCCCccceeccccccccCcCCCC---CC
Q 005709 354 IGEKKAFKLKFINLYNS--RYLTRLPE-FSEIPNLERINLSGSELERLPATIKQFSQLRYLYLRNCNMLQSLPEL---PL 427 (681)
Q Consensus 354 ~~~~~l~~L~~L~~L~l--~~l~~lp~-~~~l~~L~~L~L~~n~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~---l~ 427 (681)
..... +++|+.|++ +.+..+|. ...+.+|++|.++.|.+..++..+.++.++..|.+.+ +.+..+|.. ++
T Consensus 180 ~~~~~---~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~~~~l~ 255 (394)
T COG4886 180 KLLSN---LSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN-NKLEDLPESIGNLS 255 (394)
T ss_pred hhhhh---hhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCC-ceeeeccchhcccc
Confidence 88766 899999999 88999998 4566779999999998888888899999999999877 445443433 77
Q ss_pred CCCEEeccCCCCCcccCCCCC--CccEEecccccccccccc
Q 005709 428 LLSHLDASNCKRLQSLPEISS--CLEELDISILEKLSKTTF 466 (681)
Q Consensus 428 ~L~~L~l~~c~~l~~lp~~~~--~L~~L~l~~n~l~~~~~~ 466 (681)
+|++|++++ +.+..++.... +|+.|+++++.+...++.
T Consensus 256 ~l~~L~~s~-n~i~~i~~~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 256 NLETLDLSN-NQISSISSLGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ccceecccc-ccccccccccccCccCEEeccCccccccchh
Confidence 899999998 46777776322 999999999998887765
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.74 E-value=1.3e-09 Score=107.04 Aligned_cols=129 Identities=21% Similarity=0.182 Sum_probs=88.7
Q ss_pred CCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCCCCCCceEEEcCCCCccccccccccccc
Q 005709 282 SSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSFEPNYLIELNLPYSKVEQIWIGEKKAFK 361 (681)
Q Consensus 282 ~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~ 361 (681)
..|..|+|++|. ...+.++..-+ +.++.|+++.|.+..+...-.+.+|+.|||++|.++++-.+-..
T Consensus 284 q~LtelDLS~N~---------I~~iDESvKL~-Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~K--- 350 (490)
T KOG1259|consen 284 QELTELDLSGNL---------ITQIDESVKLA-PKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLK--- 350 (490)
T ss_pred hhhhhccccccc---------hhhhhhhhhhc-cceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhh---
Confidence 457777777776 34555555555 56888888888777766533777888888888877766444344
Q ss_pred ccccceecc--cCCcccCCCCCCCCCcEEEcccCCCcccCc--cccCCCccceeccccccccCcCCC
Q 005709 362 LKFINLYNS--RYLTRLPEFSEIPNLERINLSGSELERLPA--TIKQFSQLRYLYLRNCNMLQSLPE 424 (681)
Q Consensus 362 L~~L~~L~l--~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~--~i~~L~~L~~L~L~~c~~l~~lp~ 424 (681)
|.+.+.|.| |.+..+..++++-+|.+||+++|+|.++.. +||+|+.|++|.|.+ +.+..+|+
T Consensus 351 LGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~-NPl~~~vd 416 (490)
T KOG1259|consen 351 LGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTG-NPLAGSVD 416 (490)
T ss_pred hcCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcC-CCccccch
Confidence 777777777 666667677777788888888887776543 577777777777777 33444443
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.71 E-value=8.8e-09 Score=97.28 Aligned_cols=122 Identities=20% Similarity=0.197 Sum_probs=32.9
Q ss_pred cCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCCCCCCceEEEcCCCCcccccccc-c
Q 005709 279 ANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSFEPNYLIELNLPYSKVEQIWIGE-K 357 (681)
Q Consensus 279 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~~~-~ 357 (681)
.+..+++.|+|.+|.++. + +.+.....+|+.|++++|.++.++..-.+++|++|++++|.|+.+..++ .
T Consensus 16 ~n~~~~~~L~L~~n~I~~---------I-e~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~ 85 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIST---------I-ENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDK 85 (175)
T ss_dssp ------------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHH
T ss_pred cccccccccccccccccc---------c-cchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHH
Confidence 344566777777665421 1 2233211567777777777777654336677777777777777664433 2
Q ss_pred ccccccccceecc--cCCcccCC---CCCCCCCcEEEcccCCCcccCcc----ccCCCccceecc
Q 005709 358 KAFKLKFINLYNS--RYLTRLPE---FSEIPNLERINLSGSELERLPAT----IKQFSQLRYLYL 413 (681)
Q Consensus 358 ~l~~L~~L~~L~l--~~l~~lp~---~~~l~~L~~L~L~~n~l~~lp~~----i~~L~~L~~L~L 413 (681)
. +++|+.|++ |.+..+.+ ++.+++|+.|+|.+|.++.-+.. +..+++|+.||-
T Consensus 86 ~---lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 86 N---LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp H----TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred h---CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 3 455555555 33333332 34455555555555555433321 344444444443
No 31
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.68 E-value=9.9e-09 Score=120.09 Aligned_cols=234 Identities=19% Similarity=0.234 Sum_probs=141.9
Q ss_pred ccCchhhHHhhcCcCCCcEEEEEeecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccE
Q 005709 240 WDHKDVYQVLKKNKGTDAIEGIFFDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRY 319 (681)
Q Consensus 240 ~~~~~~~~vl~~~~~~~~v~~l~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~ 319 (681)
+...++.+....... .+++.+.+..+......++...|..|+.|++|++++|.- .+.+|.++..+ -+|||
T Consensus 530 ~~~~~~~~~~~~~~~-~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~--------l~~LP~~I~~L-i~Lry 599 (889)
T KOG4658|consen 530 LMNNKIEHIAGSSEN-PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS--------LSKLPSSIGEL-VHLRY 599 (889)
T ss_pred EeccchhhccCCCCC-CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc--------cCcCChHHhhh-hhhhc
Confidence 334444444333332 356666655554234556778899999999999998653 68899999999 79999
Q ss_pred EEecCCCCCCCCCCC-CCCCceEEEcCCCCc-ccccccccccccccccceecc--cCCc----ccCCCCCCCCCcEEEcc
Q 005709 320 LHWHEYPLKTLPFSF-EPNYLIELNLPYSKV-EQIWIGEKKAFKLKFINLYNS--RYLT----RLPEFSEIPNLERINLS 391 (681)
Q Consensus 320 L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l-~~lp~~~~~l~~L~~L~~L~l--~~l~----~lp~~~~l~~L~~L~L~ 391 (681)
|+++++.++.+|..+ +++.|.+|++..+.- ..+|..... |.+|++|.+ .... .+-++.++.+|+.|...
T Consensus 600 L~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~---L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 600 LDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLE---LQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred ccccCCCccccchHHHHHHhhheeccccccccccccchhhh---cccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 999999999999999 999999999998864 444555555 999999999 2211 11124556666666655
Q ss_pred cCCCcccCccccCCCccc----eeccccccccCcCCCC--CCCCCEEeccCCCCCcccCCCCC---------CccEEecc
Q 005709 392 GSELERLPATIKQFSQLR----YLYLRNCNMLQSLPEL--PLLLSHLDASNCKRLQSLPEISS---------CLEELDIS 456 (681)
Q Consensus 392 ~n~l~~lp~~i~~L~~L~----~L~L~~c~~l~~lp~~--l~~L~~L~l~~c~~l~~lp~~~~---------~L~~L~l~ 456 (681)
..+. .+-..+..+++|. .+.+.+|..-...+.. +.+|+.|.+.+|...+....... ++..+.+.
T Consensus 677 ~~s~-~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~ 755 (889)
T KOG4658|consen 677 ISSV-LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSIL 755 (889)
T ss_pred cchh-HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhh
Confidence 2222 1111223333333 2332222222222221 67788888887765543333322 22233333
Q ss_pred cccccccccccccCCCCCcEEEccCCcccccc
Q 005709 457 ILEKLSKTTFPIKHGCSLMQFEFQNCWELKEN 488 (681)
Q Consensus 457 ~n~l~~~~~~~l~~l~~L~~L~l~~c~~L~l~ 488 (681)
++.....+.+ ....++|+.|.+..|..+...
T Consensus 756 ~~~~~r~l~~-~~f~~~L~~l~l~~~~~~e~~ 786 (889)
T KOG4658|consen 756 NCHMLRDLTW-LLFAPHLTSLSLVSCRLLEDI 786 (889)
T ss_pred ccccccccch-hhccCcccEEEEecccccccC
Confidence 3333333333 345577888888888766543
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.68 E-value=1.2e-08 Score=96.26 Aligned_cols=82 Identities=26% Similarity=0.438 Sum_probs=19.7
Q ss_pred CCCCceEEEcCCCCccccccccc-ccccccccceecc--cCCcccCCCCCCCCCcEEEcccCCCcccCccc-cCCCccce
Q 005709 335 EPNYLIELNLPYSKVEQIWIGEK-KAFKLKFINLYNS--RYLTRLPEFSEIPNLERINLSGSELERLPATI-KQFSQLRY 410 (681)
Q Consensus 335 ~l~~L~~L~L~~n~l~~lp~~~~-~l~~L~~L~~L~l--~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~~i-~~L~~L~~ 410 (681)
++..+++|+|++|.|+.+. .+. . +.+|+.|++ |.++.++.+..+++|++|++++|.|+.+++.+ ..+++|+.
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~---l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGAT---LDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT----TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred ccccccccccccccccccc-chhhh---hcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 3444455555555544432 111 2 444444444 44445555666677777777777777776554 35677777
Q ss_pred eccccccccCc
Q 005709 411 LYLRNCNMLQS 421 (681)
Q Consensus 411 L~L~~c~~l~~ 421 (681)
|++++ +.+..
T Consensus 93 L~L~~-N~I~~ 102 (175)
T PF14580_consen 93 LYLSN-NKISD 102 (175)
T ss_dssp EE-TT-S---S
T ss_pred EECcC-CcCCC
Confidence 77776 33443
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=6.1e-09 Score=107.62 Aligned_cols=154 Identities=13% Similarity=0.112 Sum_probs=108.4
Q ss_pred CCCcEEEEEeecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCC
Q 005709 254 GTDAIEGIFFDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFS 333 (681)
Q Consensus 254 ~~~~v~~l~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~ 333 (681)
..++++.++||.......... .....+++++.|+|+.|-+..| ..+..-.+.+ ++|+.|+++.|.+...-++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~-~~~k~~~~v~~LdLS~NL~~nw------~~v~~i~eqL-p~Le~LNls~Nrl~~~~~s 190 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIE-EYSKILPNVRDLDLSRNLFHNW------FPVLKIAEQL-PSLENLNLSSNRLSNFISS 190 (505)
T ss_pred hHHhhhheeecCccccccchh-hhhhhCCcceeecchhhhHHhH------HHHHHHHHhc-ccchhcccccccccCCccc
Confidence 445778888888776654433 4667899999999998876433 2223334455 7899999999998875544
Q ss_pred C---CCCCceEEEcCCCCcccccccccc-cccccccceecc--cCCcccC--CCCCCCCCcEEEcccCCCcccC--cccc
Q 005709 334 F---EPNYLIELNLPYSKVEQIWIGEKK-AFKLKFINLYNS--RYLTRLP--EFSEIPNLERINLSGSELERLP--ATIK 403 (681)
Q Consensus 334 ~---~l~~L~~L~L~~n~l~~lp~~~~~-l~~L~~L~~L~l--~~l~~lp--~~~~l~~L~~L~L~~n~l~~lp--~~i~ 403 (681)
. .+.+|+.|.|+.|.++ |..+.. +..+++|..|+| |...-+. ...-+..|+.|||++|++-..+ .-++
T Consensus 191 ~~~~~l~~lK~L~l~~CGls--~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~ 268 (505)
T KOG3207|consen 191 NTTLLLSHLKQLVLNSCGLS--WKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVG 268 (505)
T ss_pred cchhhhhhhheEEeccCCCC--HHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccc
Confidence 3 6789999999999987 333322 123788888888 4222222 2455678889999988887776 4488
Q ss_pred CCCccceecccccc
Q 005709 404 QFSQLRYLYLRNCN 417 (681)
Q Consensus 404 ~L~~L~~L~L~~c~ 417 (681)
.|+.|+.|+++.|.
T Consensus 269 ~l~~L~~Lnls~tg 282 (505)
T KOG3207|consen 269 TLPGLNQLNLSSTG 282 (505)
T ss_pred cccchhhhhccccC
Confidence 88888888888754
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.63 E-value=4.9e-09 Score=103.11 Aligned_cols=168 Identities=19% Similarity=0.183 Sum_probs=88.3
Q ss_pred CCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCC-------------------------C
Q 005709 281 MSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSF-------------------------E 335 (681)
Q Consensus 281 l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~-------------------------~ 335 (681)
+++|+.+.++... ..++ .++..+.+.|..+...+..++..|... .
T Consensus 213 f~~l~~~~~s~~~---------~~~i-~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dT 282 (490)
T KOG1259|consen 213 FRNLKTLKFSALS---------TENI-VDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADT 282 (490)
T ss_pred hhhhheeeeeccc---------hhhe-eceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecch
Confidence 4566777777433 1222 233344456777777776555433211 1
Q ss_pred CCCceEEEcCCCCcccccccccccccccccceecc--cCCcccCCCCCCCCCcEEEcccCCCcccCccccCCCccceecc
Q 005709 336 PNYLIELNLPYSKVEQIWIGEKKAFKLKFINLYNS--RYLTRLPEFSEIPNLERINLSGSELERLPATIKQFSQLRYLYL 413 (681)
Q Consensus 336 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~~L~l--~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~~i~~L~~L~~L~L 413 (681)
.+.|++|||++|.|+.+-.+++- ++.++.|++ |.+..+.++..+++|+.||||+|.++++..+-.+
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL---~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~K--------- 350 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKL---APKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLK--------- 350 (490)
T ss_pred Hhhhhhccccccchhhhhhhhhh---ccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhh---------
Confidence 23566677777776666666555 455555554 4444444444444555555554444444333333
Q ss_pred ccccccCcCCCCCCCCCEEeccCCCCCcccCCCC--CCccEEeccccccccccc-ccccCCCCCcEEEccCCc
Q 005709 414 RNCNMLQSLPELPLLLSHLDASNCKRLQSLPEIS--SCLEELDISILEKLSKTT-FPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 414 ~~c~~l~~lp~~l~~L~~L~l~~c~~l~~lp~~~--~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~c~ 483 (681)
+-++++|.+++ +.++.+...- -+|..|++++|+|..+.. ..+++|+-|.++.+.+|+
T Consensus 351 ------------LGNIKtL~La~-N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 351 ------------LGNIKTLKLAQ-NKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred ------------hcCEeeeehhh-hhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 44445555554 2333332211 166666666666665432 127777777777777775
No 35
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.31 E-value=8.6e-08 Score=104.87 Aligned_cols=190 Identities=16% Similarity=0.194 Sum_probs=135.6
Q ss_pred CCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCC-CCCCceEEEcCCCCcccccccccc
Q 005709 280 NMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSF-EPNYLIELNLPYSKVEQIWIGEKK 358 (681)
Q Consensus 280 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~lp~~~~~ 358 (681)
.+..++.+.+..|.. ..+-..+..+ ++|..|++.+|.+..+...+ .+.+|++|++++|.|+++. ++..
T Consensus 70 ~l~~l~~l~l~~n~i---------~~~~~~l~~~-~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~ 138 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLI---------AKILNHLSKL-KSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLST 138 (414)
T ss_pred HhHhHHhhccchhhh---------hhhhcccccc-cceeeeeccccchhhcccchhhhhcchheecccccccccc-chhh
Confidence 344555555655542 2222224444 78999999999999888755 7999999999999998874 3444
Q ss_pred cccccccceecc--cCCcccCCCCCCCCCcEEEcccCCCcccCcc-ccCCCccceeccccccccCcCCCC--CCCCCEEe
Q 005709 359 AFKLKFINLYNS--RYLTRLPEFSEIPNLERINLSGSELERLPAT-IKQFSQLRYLYLRNCNMLQSLPEL--PLLLSHLD 433 (681)
Q Consensus 359 l~~L~~L~~L~l--~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~~-i~~L~~L~~L~L~~c~~l~~lp~~--l~~L~~L~ 433 (681)
++.|+.|++ |.+..++.+..+++|+.+++++|.++.+... ...+.+|+.+.+.+ +.+..+... +..+..++
T Consensus 139 ---l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~-n~i~~i~~~~~~~~l~~~~ 214 (414)
T KOG0531|consen 139 ---LTLLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGG-NSIREIEGLDLLKKLVLLS 214 (414)
T ss_pred ---ccchhhheeccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccC-CchhcccchHHHHHHHHhh
Confidence 778999999 8888998888899999999999999988764 58889999999998 445554433 33344445
Q ss_pred ccCCCCCcccCCCCC----CccEEecccccccccccccccCCCCCcEEEccCCcccc
Q 005709 434 ASNCKRLQSLPEISS----CLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCWELK 486 (681)
Q Consensus 434 l~~c~~l~~lp~~~~----~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~~L~ 486 (681)
+..+ .+..+-.... .|+.+++++|.+...+.. +..+.++..|++.++.--.
T Consensus 215 l~~n-~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~~~-~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 215 LLDN-KISKLEGLNELVMLHLRELYLSGNRISRSPEG-LENLKNLPVLDLSSNRISN 269 (414)
T ss_pred cccc-cceeccCcccchhHHHHHHhcccCcccccccc-ccccccccccchhhccccc
Confidence 5553 3333322111 389999999999888644 7778888888887765333
No 36
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.23 E-value=3.2e-05 Score=93.69 Aligned_cols=196 Identities=17% Similarity=0.221 Sum_probs=128.4
Q ss_pred CCeEEEEEECcChh--------HHHhhcCCCCCCCCcEEEEEeCCchhhh--ccC-CceEEEcC----CCCHHHHHHHHH
Q 005709 22 QRKVLIVLDDVDDN--------SKNFAGGLELFSPGSRIIITTRDKRLLD--KRR-VENVYEVK----GLKHNSALELFC 86 (681)
Q Consensus 22 ~kr~LiVLDdv~~~--------~~~l~~~~~~~~~gSrIivTTR~~~v~~--~~~-~~~~~~l~----~L~~~e~~~Lf~ 86 (681)
+.+++|||||+... +..+... ..++-++|||||...-.. ... .....++. +++.+|+.++|.
T Consensus 120 ~~~~~lvlDD~h~~~~~~~~~~l~~l~~~---~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~ 196 (903)
T PRK04841 120 HQPLYLVIDDYHLITNPEIHEAMRFFLRH---QPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFD 196 (903)
T ss_pred CCCEEEEEeCcCcCCChHHHHHHHHHHHh---CCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHH
Confidence 67899999998653 3334433 346778889999842111 111 12245555 899999999998
Q ss_pred HHhccCCCCChhHHHHHHHHHHHcCCChhHHHHHHhhhcCCCHHHHHHHHHHhhhcCChhHHHHHHHH-hcCCCHHHHHH
Q 005709 87 RKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGSSLYQKSKEQWKDKLRKLKLITDPNIYKVLKIS-YDGLNWEEKEI 165 (681)
Q Consensus 87 ~~af~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~L~~k~~~~w~~~l~~l~~~~~~~i~~~l~~s-y~~L~~~~k~c 165 (681)
......- -.+.+.++.+.|+|.|+++..++..+...... .......+...+...+...+.-. ++.||++.+..
T Consensus 197 ~~~~~~~-----~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~ 270 (903)
T PRK04841 197 QRLSSPI-----EAAESSRLCDDVEGWATALQLIALSARQNNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHF 270 (903)
T ss_pred hccCCCC-----CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHH
Confidence 6653221 13346789999999999999988777543210 01111222222234465554444 88999999999
Q ss_pred HhhhcccCCCCCHHHHHHhhcCCCchhhhHHHHhhccceeE-e---CCeEeehHHHHHHHHHHhhhc
Q 005709 166 FLDVACFFKGEDVDFVTRVQDDPTSMHNGLNTLVEMSLITI-S---ANRLQMHDILQELGKTIILQE 228 (681)
Q Consensus 166 fl~~a~Fp~~~~~~~~~~i~~~~~~~~~~~~~L~~~sli~~-~---~~~~~mHdll~~~~~~i~~~e 228 (681)
++..|+++ ....+....+. |...+...++.|.+.+++.. . ...|++|++++++.+.....+
T Consensus 271 l~~~a~~~-~~~~~l~~~l~-~~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 271 LLRCSVLR-SMNDALIVRVT-GEENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred HHHhcccc-cCCHHHHHHHc-CCCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhc
Confidence 99999986 44444333333 45556788999999998653 2 237999999999988776433
No 37
>PLN03150 hypothetical protein; Provisional
Probab=98.19 E-value=2.3e-06 Score=98.16 Aligned_cols=84 Identities=23% Similarity=0.345 Sum_probs=52.8
Q ss_pred ceEEEcCCCCcc-cccccccccccccccceecc--cCCc-ccCC-CCCCCCCcEEEcccCCCc-ccCccccCCCccceec
Q 005709 339 LIELNLPYSKVE-QIWIGEKKAFKLKFINLYNS--RYLT-RLPE-FSEIPNLERINLSGSELE-RLPATIKQFSQLRYLY 412 (681)
Q Consensus 339 L~~L~L~~n~l~-~lp~~~~~l~~L~~L~~L~l--~~l~-~lp~-~~~l~~L~~L~L~~n~l~-~lp~~i~~L~~L~~L~ 412 (681)
++.|+|++|.+. .+|..+.. |++|+.|+| +.+. .+|. ++.+++|+.|+|++|++. .+|..+++|++|+.|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~---L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISK---LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEECCCCCccccCCHHHhC---CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence 566777777665 45555555 666666666 3333 5554 666677777777766666 5666677777777777
Q ss_pred cccccccCcCCCC
Q 005709 413 LRNCNMLQSLPEL 425 (681)
Q Consensus 413 L~~c~~l~~lp~~ 425 (681)
|++|+..+.+|..
T Consensus 497 Ls~N~l~g~iP~~ 509 (623)
T PLN03150 497 LNGNSLSGRVPAA 509 (623)
T ss_pred CcCCcccccCChH
Confidence 7666555566654
No 38
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.19 E-value=6.6e-06 Score=87.19 Aligned_cols=92 Identities=21% Similarity=0.326 Sum_probs=47.8
Q ss_pred CCcEEEcccCC---CcccCccccCCCccceeccccccc--cCcCCCC-CCCCCEEeccCCCCCcccCCCCC-CccEEecc
Q 005709 384 NLERINLSGSE---LERLPATIKQFSQLRYLYLRNCNM--LQSLPEL-PLLLSHLDASNCKRLQSLPEISS-CLEELDIS 456 (681)
Q Consensus 384 ~L~~L~L~~n~---l~~lp~~i~~L~~L~~L~L~~c~~--l~~lp~~-l~~L~~L~l~~c~~l~~lp~~~~-~L~~L~l~ 456 (681)
+|+.|+++++. +..+|++ |+.|.+.+++. ...+|.. +++|++|++++|..+ .+|..++ +|+.|.++
T Consensus 113 sLe~L~L~~n~~~~L~~LPss------Lk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP~SLk~L~ls 185 (426)
T PRK15386 113 SVRSLEIKGSATDSIKNVPNG------LTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLPESLQSITLH 185 (426)
T ss_pred ccceEEeCCCCCcccccCcch------HhheeccccccccccccccccCCcccEEEecCCCcc-cCcccccccCcEEEec
Confidence 35555565443 4455553 44555533221 1223322 467888888887654 3565555 88888887
Q ss_pred cccccccccccccCC-CCCcEEEccCCcc
Q 005709 457 ILEKLSKTTFPIKHG-CSLMQFEFQNCWE 484 (681)
Q Consensus 457 ~n~l~~~~~~~l~~l-~~L~~L~l~~c~~ 484 (681)
.+....+... ...+ .++ .|++.+|-.
T Consensus 186 ~n~~~sLeI~-~~sLP~nl-~L~f~n~lk 212 (426)
T PRK15386 186 IEQKTTWNIS-FEGFPDGL-DIDLQNSVL 212 (426)
T ss_pred ccccccccCc-cccccccc-Eechhhhcc
Confidence 6543221111 1112 344 677777643
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.15 E-value=1.8e-06 Score=66.81 Aligned_cols=58 Identities=38% Similarity=0.609 Sum_probs=38.8
Q ss_pred CceEEEcCCCCcccccccccccccccccceecccCCcccCCCCCCCCCcEEEcccCCCcccCc-cccCCCccceeccccc
Q 005709 338 YLIELNLPYSKVEQIWIGEKKAFKLKFINLYNSRYLTRLPEFSEIPNLERINLSGSELERLPA-TIKQFSQLRYLYLRNC 416 (681)
Q Consensus 338 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~~L~l~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~-~i~~L~~L~~L~L~~c 416 (681)
+|++|++++|+++.+|.+. |.++++|++|++++|.++.+|+ .|..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~----------------------f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDS----------------------FSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTT----------------------TTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHH----------------------HcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 4666666666666554332 5567777777777777777765 4677777777777775
Q ss_pred c
Q 005709 417 N 417 (681)
Q Consensus 417 ~ 417 (681)
+
T Consensus 60 ~ 60 (61)
T PF13855_consen 60 N 60 (61)
T ss_dssp S
T ss_pred c
Confidence 3
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.14 E-value=2.8e-06 Score=97.40 Aligned_cols=101 Identities=18% Similarity=0.261 Sum_probs=83.6
Q ss_pred CccEEEecCCCCC-CCCCCC-CCCCceEEEcCCCCcc-cccccccccccccccceecc--cCCc-ccCC-CCCCCCCcEE
Q 005709 316 KLRYLHWHEYPLK-TLPFSF-EPNYLIELNLPYSKVE-QIWIGEKKAFKLKFINLYNS--RYLT-RLPE-FSEIPNLERI 388 (681)
Q Consensus 316 ~L~~L~l~~~~l~-~lp~~~-~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~~L~l--~~l~-~lp~-~~~l~~L~~L 388 (681)
.++.|+|++|.++ .+|..+ .+++|+.|+|++|.+. .+|..+.. +++|+.|++ |.+. .+|+ ++++++|+.|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~---l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS---ITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhC---CCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 4788999999987 478778 8999999999999997 78888888 999999999 5555 6887 9999999999
Q ss_pred EcccCCCc-ccCccccCC-Cccceecccccccc
Q 005709 389 NLSGSELE-RLPATIKQF-SQLRYLYLRNCNML 419 (681)
Q Consensus 389 ~L~~n~l~-~lp~~i~~L-~~L~~L~L~~c~~l 419 (681)
+|++|+++ .+|..++.+ .++..+++.+|..+
T Consensus 496 ~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 496 NLNGNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred ECcCCcccccCChHHhhccccCceEEecCCccc
Confidence 99999888 789887764 35566666665443
No 41
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=9.2e-07 Score=91.83 Aligned_cols=189 Identities=17% Similarity=0.108 Sum_probs=123.1
Q ss_pred cCCCCCceEEEeCCCCCCCcccccccccCc---cccccccCccEEEecCCCCCCCCCC---C-CCCCceEEEcCCCCccc
Q 005709 279 ANMSSLTLLKFYMPECNGVPIMSSKLHLNQ---DLEYLPKKLRYLHWHEYPLKTLPFS---F-EPNYLIELNLPYSKVEQ 351 (681)
Q Consensus 279 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~---~l~~l~~~L~~L~l~~~~l~~lp~~---~-~l~~L~~L~L~~n~l~~ 351 (681)
+++++||...|.+.. ...+. ....+ ++++.|||+.|-+...-+- . .+++|+.|+|+.|.+..
T Consensus 118 sn~kkL~~IsLdn~~----------V~~~~~~~~~k~~-~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~ 186 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR----------VEDAGIEEYSKIL-PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSN 186 (505)
T ss_pred hhHHhhhheeecCcc----------ccccchhhhhhhC-CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccC
Confidence 567889998888543 22222 34444 7899999999977654332 3 78999999999998875
Q ss_pred ccccccccccccccceecc--cCCc--ccCC-CCCCCCCcEEEcccC-CCcccCccccCCCccceeccccccccCcCCCC
Q 005709 352 IWIGEKKAFKLKFINLYNS--RYLT--RLPE-FSEIPNLERINLSGS-ELERLPATIKQFSQLRYLYLRNCNMLQSLPEL 425 (681)
Q Consensus 352 lp~~~~~l~~L~~L~~L~l--~~l~--~lp~-~~~l~~L~~L~L~~n-~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~ 425 (681)
.+.+.... .+++|+.|.+ +.+. .+-. ...+|+|+.|+|+.| .+..--.+...++.|+.|+|++| .+-.++..
T Consensus 187 ~~~s~~~~-~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N-~li~~~~~ 264 (505)
T KOG3207|consen 187 FISSNTTL-LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNN-NLIDFDQG 264 (505)
T ss_pred Cccccchh-hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCC-cccccccc
Confidence 54442221 2778888888 3332 2222 457889999999966 33332334566788999999984 45555533
Q ss_pred -----CCCCCEEeccCCCCCcc--cCCC--------CCCccEEecccccccccccc-cccCCCCCcEEEccC
Q 005709 426 -----PLLLSHLDASNCKRLQS--LPEI--------SSCLEELDISILEKLSKTTF-PIKHGCSLMQFEFQN 481 (681)
Q Consensus 426 -----l~~L~~L~l~~c~~l~~--lp~~--------~~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~ 481 (681)
++.|+.|+++.| .+.+ +|+. +.+|++|++..|++.+.+.- .+..+.+|+.|.+..
T Consensus 265 ~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 265 YKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred cccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccc
Confidence 788888888875 3332 2332 22899999999988766541 134455666665543
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.12 E-value=2.8e-06 Score=65.77 Aligned_cols=39 Identities=23% Similarity=0.262 Sum_probs=28.8
Q ss_pred CccEEEecCCCCCCCCCC-C-CCCCceEEEcCCCCcccccc
Q 005709 316 KLRYLHWHEYPLKTLPFS-F-EPNYLIELNLPYSKVEQIWI 354 (681)
Q Consensus 316 ~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~l~~lp~ 354 (681)
+|++|++++|.++.+|.. | .+++|++|++++|.++.++.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~ 42 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPP 42 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEET
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCH
Confidence 577777787777777764 4 67788888888777776654
No 43
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.09 E-value=1e-05 Score=85.70 Aligned_cols=133 Identities=21% Similarity=0.271 Sum_probs=86.9
Q ss_pred hcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCC-CCCCCCCCCCCCceEEEcCCC-Cccccccc
Q 005709 278 FANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYP-LKTLPFSFEPNYLIELNLPYS-KVEQIWIG 355 (681)
Q Consensus 278 f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~-l~~lp~~~~l~~L~~L~L~~n-~l~~lp~~ 355 (681)
+..+.+++.|+++++.+ ..+| .+|.+|+.|.+++|. ++.+|..+ +.+|++|++++| .+..+|..
T Consensus 48 ~~~~~~l~~L~Is~c~L---------~sLP----~LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDI---------ESLP----VLPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred HHHhcCCCEEEeCCCCC---------cccC----CCCCCCcEEEccCCCCcccCCchh-hhhhhheEccCcccccccccc
Confidence 44578999999997653 4445 467889999999864 77788655 468999999998 78888766
Q ss_pred ccccccccccceecccCCcccCCCCCCCCCcEEEccc-CCC--cccCccccCC-CccceeccccccccCcCCC-CCCCCC
Q 005709 356 EKKAFKLKFINLYNSRYLTRLPEFSEIPNLERINLSG-SEL--ERLPATIKQF-SQLRYLYLRNCNMLQSLPE-LPLLLS 430 (681)
Q Consensus 356 ~~~l~~L~~L~~L~l~~l~~lp~~~~l~~L~~L~L~~-n~l--~~lp~~i~~L-~~L~~L~L~~c~~l~~lp~-~l~~L~ 430 (681)
+.. |. |....+..+..+|. +|+.|.+.. +.. ..+|. .| ++|++|++++|..+. +|. .+.+|+
T Consensus 114 Le~---L~-L~~n~~~~L~~LPs-----sLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i~-LP~~LP~SLk 180 (426)
T PRK15386 114 VRS---LE-IKGSATDSIKNVPN-----GLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNII-LPEKLPESLQ 180 (426)
T ss_pred cce---EE-eCCCCCcccccCcc-----hHhheecccccccccccccc---ccCCcccEEEecCCCccc-CcccccccCc
Confidence 444 22 11000122334442 577787753 222 12221 12 589999999988654 454 467899
Q ss_pred EEeccCC
Q 005709 431 HLDASNC 437 (681)
Q Consensus 431 ~L~l~~c 437 (681)
.|.++.+
T Consensus 181 ~L~ls~n 187 (426)
T PRK15386 181 SITLHIE 187 (426)
T ss_pred EEEeccc
Confidence 9999774
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.06 E-value=2.5e-07 Score=101.14 Aligned_cols=118 Identities=19% Similarity=0.194 Sum_probs=86.3
Q ss_pred CCCCcEEEcccCCCcccCccccCCCccceeccccccccCcCCCC--CCCCCEEeccCCCCCcccCCCCC---CccEEecc
Q 005709 382 IPNLERINLSGSELERLPATIKQFSQLRYLYLRNCNMLQSLPEL--PLLLSHLDASNCKRLQSLPEISS---CLEELDIS 456 (681)
Q Consensus 382 l~~L~~L~L~~n~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~--l~~L~~L~l~~c~~l~~lp~~~~---~L~~L~l~ 456 (681)
+..|.+.+.+||.++.+..++.-++.|+.|||++ |++.+.... ++.|++|||++ |-+..+|..-. .|+.|.++
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLsh-Nk~~~v~~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSH-NKFTKVDNLRRLPKLKHLDLSY-NCLRHVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccch-hhhhhhHHHHhccccccccccc-chhccccccchhhhhheeeeec
Confidence 3467778888999998888888889999999998 445554433 77899999988 56777776533 89999999
Q ss_pred cccccccccccccCCCCCcEEEccCCccccccccccChHHHHHhhHHHHHH
Q 005709 457 ILEKLSKTTFPIKHGCSLMQFEFQNCWELKENKILEDSELRIQHMAIASLR 507 (681)
Q Consensus 457 ~n~l~~~~~~~l~~l~~L~~L~l~~c~~L~l~~~~l~~~~i~~l~~L~~L~ 507 (681)
+|.++++-. +.+|.+|+.||++.|--.+.+.- ..++.|..|..|.
T Consensus 241 nN~l~tL~g--ie~LksL~~LDlsyNll~~hseL----~pLwsLs~L~~L~ 285 (1096)
T KOG1859|consen 241 NNALTTLRG--IENLKSLYGLDLSYNLLSEHSEL----EPLWSLSSLIVLW 285 (1096)
T ss_pred ccHHHhhhh--HHhhhhhhccchhHhhhhcchhh----hHHHHHHHHHHHh
Confidence 999988764 78888888887776543333211 3455566666554
No 45
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.89 E-value=1.4e-06 Score=88.17 Aligned_cols=234 Identities=18% Similarity=0.161 Sum_probs=140.1
Q ss_pred chhhHHhhcCcCCCcEEEEEeecCCCc--ccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccc------
Q 005709 243 KDVYQVLKKNKGTDAIEGIFFDLSKIN--YLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLP------ 314 (681)
Q Consensus 243 ~~~~~vl~~~~~~~~v~~l~l~~~~~~--~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~------ 314 (681)
++.-.|.........+..+.|+.+... ........+.+.++|+.-++++-.-. .....+|+.+..+.
T Consensus 17 ed~~~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftG-----R~~~Ei~e~L~~l~~aL~~~ 91 (382)
T KOG1909|consen 17 EDEKDVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTG-----RLKDEIPEALKMLSKALLGC 91 (382)
T ss_pred hhhhhHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcC-----CcHHHHHHHHHHHHHHHhcC
Confidence 344444444444455665555444332 12233455677788888887742210 11233444433221
Q ss_pred cCccEEEecCCCCCC--CCCC---C-CCCCceEEEcCCCCcccccccc-----------cccccccccceecc--cCCcc
Q 005709 315 KKLRYLHWHEYPLKT--LPFS---F-EPNYLIELNLPYSKVEQIWIGE-----------KKAFKLKFINLYNS--RYLTR 375 (681)
Q Consensus 315 ~~L~~L~l~~~~l~~--lp~~---~-~l~~L~~L~L~~n~l~~lp~~~-----------~~l~~L~~L~~L~l--~~l~~ 375 (681)
++|++|+||.|-+.. ++.. + ....|++|.|.+|.+...-.+. ....+-+.|+++.+ |.+..
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 389999999997653 2221 2 5788999999999886432111 11123678888888 66665
Q ss_pred cCC------CCCCCCCcEEEcccCCCcc-----cCccccCCCccceeccccccccCc---------CCCCCCCCCEEecc
Q 005709 376 LPE------FSEIPNLERINLSGSELER-----LPATIKQFSQLRYLYLRNCNMLQS---------LPELPLLLSHLDAS 435 (681)
Q Consensus 376 lp~------~~~l~~L~~L~L~~n~l~~-----lp~~i~~L~~L~~L~L~~c~~l~~---------lp~~l~~L~~L~l~ 435 (681)
-+. |...+.|+.+.++.|.|.. +...+..+++|+.|||++|. ++. +|. +++|+.|+++
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s-~~~L~El~l~ 249 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSS-WPHLRELNLG 249 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhcc-cchheeeccc
Confidence 551 5667889999998877752 34457888999999999854 322 222 6688899998
Q ss_pred CCCCCc--------ccCCCCCCccEEeccccccccc----ccccccCCCCCcEEEccCCc
Q 005709 436 NCKRLQ--------SLPEISSCLEELDISILEKLSK----TTFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 436 ~c~~l~--------~lp~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~c~ 483 (681)
+|..-. .+-...++|+.|.+.+|.++.- ....+...+.|..|+|++|.
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 885321 2233344788888888887631 11124456777777776665
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.88 E-value=2.4e-06 Score=93.54 Aligned_cols=169 Identities=24% Similarity=0.291 Sum_probs=95.2
Q ss_pred hcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCCCCCCceEEEcCCCCccccccccc
Q 005709 278 FANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSFEPNYLIELNLPYSKVEQIWIGEK 357 (681)
Q Consensus 278 f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~~~~ 357 (681)
+..+++|..|++++|.+ ..+...+..+ .+|++|++++|.|+.+...-.+..|+.|++++|.|+.+. ++.
T Consensus 91 l~~~~~l~~l~l~~n~i---------~~i~~~l~~~-~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~ 159 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKI---------EKIENLLSSL-VNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS-GLE 159 (414)
T ss_pred cccccceeeeeccccch---------hhcccchhhh-hcchheeccccccccccchhhccchhhheeccCcchhcc-CCc
Confidence 45566777777776664 2222223444 567777777777777665546666777777777776653 233
Q ss_pred ccccccccceecc--cCCcccCC--CCCCCCCcEEEcccCCCcccCccccCCCccceeccccccccCcCCCC--CCC--C
Q 005709 358 KAFKLKFINLYNS--RYLTRLPE--FSEIPNLERINLSGSELERLPATIKQFSQLRYLYLRNCNMLQSLPEL--PLL--L 429 (681)
Q Consensus 358 ~l~~L~~L~~L~l--~~l~~lp~--~~~l~~L~~L~L~~n~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~--l~~--L 429 (681)
. +++|+.+++ +.+..++. ...+.+|+.+.+..|.+..+. ++..+..+..+++.+ +.+..+-.. +.. |
T Consensus 160 ~---l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~-n~i~~~~~l~~~~~~~L 234 (414)
T KOG0531|consen 160 S---LKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLD-NKISKLEGLNELVMLHL 234 (414)
T ss_pred c---chhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhccc-ccceeccCcccchhHHH
Confidence 3 667777777 66666665 467777777777777666543 233334444445554 333333222 222 6
Q ss_pred CEEeccCCCCCcccCCC---CCCccEEeccccccccc
Q 005709 430 SHLDASNCKRLQSLPEI---SSCLEELDISILEKLSK 463 (681)
Q Consensus 430 ~~L~l~~c~~l~~lp~~---~~~L~~L~l~~n~l~~~ 463 (681)
+.++++++ .+..++.. +..+..|++..|.+..+
T Consensus 235 ~~l~l~~n-~i~~~~~~~~~~~~l~~l~~~~n~~~~~ 270 (414)
T KOG0531|consen 235 RELYLSGN-RISRSPEGLENLKNLPVLDLSSNRISNL 270 (414)
T ss_pred HHHhcccC-ccccccccccccccccccchhhcccccc
Confidence 66666663 34433222 22666666666655543
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.63 E-value=3.2e-05 Score=55.23 Aligned_cols=41 Identities=27% Similarity=0.497 Sum_probs=32.7
Q ss_pred CCCcEEEcccCCCcccCccccCCCccceeccccccccCcCCC
Q 005709 383 PNLERINLSGSELERLPATIKQFSQLRYLYLRNCNMLQSLPE 424 (681)
Q Consensus 383 ~~L~~L~L~~n~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~ 424 (681)
++|++|++++|+|+.+|+.+++|++|+.|++++| .+.++|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 5789999999999999988999999999999985 5666553
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.60 E-value=3.7e-05 Score=54.85 Aligned_cols=39 Identities=26% Similarity=0.300 Sum_probs=29.4
Q ss_pred cCccEEEecCCCCCCCCCCC-CCCCceEEEcCCCCccccc
Q 005709 315 KKLRYLHWHEYPLKTLPFSF-EPNYLIELNLPYSKVEQIW 353 (681)
Q Consensus 315 ~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~lp 353 (681)
++|++|++++|.++.+|+.+ ++++|++|++++|.|++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 36788888888888888756 8888888888888887654
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.58 E-value=1.4e-06 Score=95.42 Aligned_cols=117 Identities=24% Similarity=0.209 Sum_probs=90.2
Q ss_pred CccEEEecCCCCCCCCCCC-CCCCceEEEcCCCCcccccccccccccccccceecc--cCCcccCCCCCC-CCCcEEEcc
Q 005709 316 KLRYLHWHEYPLKTLPFSF-EPNYLIELNLPYSKVEQIWIGEKKAFKLKFINLYNS--RYLTRLPEFSEI-PNLERINLS 391 (681)
Q Consensus 316 ~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~~L~l--~~l~~lp~~~~l-~~L~~L~L~ 391 (681)
.|...+.++|.+..+...+ -++.|+.|||++|++.+.- .+.. |+.|++||+ |.+..+|.++.- ..|+.|.|+
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~---l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRR---LPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHh---cccccccccccchhccccccchhhhhheeeeec
Confidence 5667777888877777777 5678999999999998764 4455 899999999 889999975432 249999999
Q ss_pred cCCCcccCccccCCCccceeccccccccCcCCCC-----CCCCCEEeccCCC
Q 005709 392 GSELERLPATIKQFSQLRYLYLRNCNMLQSLPEL-----PLLLSHLDASNCK 438 (681)
Q Consensus 392 ~n~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~-----l~~L~~L~l~~c~ 438 (681)
+|-++++. ++.+|.+|+.||+++ |.+....+. +..|+.|+|.||+
T Consensus 241 nN~l~tL~-gie~LksL~~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 241 NNALTTLR-GIENLKSLYGLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred ccHHHhhh-hHHhhhhhhccchhH-hhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 99998885 588999999999998 555544433 6678888888853
No 50
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.57 E-value=6.8e-06 Score=83.30 Aligned_cols=178 Identities=17% Similarity=0.118 Sum_probs=121.1
Q ss_pred cCHHHhcCCCCCceEEEeCCCCCCCcccccccccCcccccc---ccCccEEEecCCCCCCC--------------CCCC-
Q 005709 273 LSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYL---PKKLRYLHWHEYPLKTL--------------PFSF- 334 (681)
Q Consensus 273 ~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l---~~~L~~L~l~~~~l~~l--------------p~~~- 334 (681)
+-.+++...++|++|+||.|.+ ....+..+..+ ...|+.|.|.+|.+... ....
T Consensus 83 ~l~~aL~~~~~L~~ldLSDNA~--------G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~ 154 (382)
T KOG1909|consen 83 MLSKALLGCPKLQKLDLSDNAF--------GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAA 154 (382)
T ss_pred HHHHHHhcCCceeEeecccccc--------CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccC
Confidence 3456777888999999999886 22333333322 36789999999987621 1122
Q ss_pred CCCCceEEEcCCCCccccc-----ccccccccccccceecc--cCCcc-----cCC-CCCCCCCcEEEcccCCCcc----
Q 005709 335 EPNYLIELNLPYSKVEQIW-----IGEKKAFKLKFINLYNS--RYLTR-----LPE-FSEIPNLERINLSGSELER---- 397 (681)
Q Consensus 335 ~l~~L~~L~L~~n~l~~lp-----~~~~~l~~L~~L~~L~l--~~l~~-----lp~-~~~l~~L~~L~L~~n~l~~---- 397 (681)
+.++|+++...+|.+..-+ ..++. .+.|+.+.+ +.+.. +-. +..+++|+.|||..|-++.
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~---~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~ 231 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQS---HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV 231 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHh---ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH
Confidence 5678999999999887543 33555 678888888 32221 112 6789999999999888873
Q ss_pred -cCccccCCCccceeccccccccCc--------CCCCCCCCCEEeccCCCCCcc----cCC---CCCCccEEeccccccc
Q 005709 398 -LPATIKQFSQLRYLYLRNCNMLQS--------LPELPLLLSHLDASNCKRLQS----LPE---ISSCLEELDISILEKL 461 (681)
Q Consensus 398 -lp~~i~~L~~L~~L~L~~c~~l~~--------lp~~l~~L~~L~l~~c~~l~~----lp~---~~~~L~~L~l~~n~l~ 461 (681)
+-..+..+++|+.|++++|..-.. +-...++|+.|.+.+|..-.. +-. ..+.|..|+|++|.+.
T Consensus 232 ~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 232 ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 344567788999999999874321 222278899999999743211 100 1238999999999984
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.53 E-value=4.8e-06 Score=73.39 Aligned_cols=77 Identities=21% Similarity=0.261 Sum_probs=40.9
Q ss_pred CccEEEecCCCCCCCCCCC--CCCCceEEEcCCCCcccccccccccccccccceecccCCcccCCCCCCCCCcEEEcccC
Q 005709 316 KLRYLHWHEYPLKTLPFSF--EPNYLIELNLPYSKVEQIWIGEKKAFKLKFINLYNSRYLTRLPEFSEIPNLERINLSGS 393 (681)
Q Consensus 316 ~L~~L~l~~~~l~~lp~~~--~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~~L~l~~l~~lp~~~~l~~L~~L~L~~n 393 (681)
.|+..++++|.++.+|+.| ..+.++.|+|++|.|+.+|..+. .++.|+.|+++.|
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~A-----------------------am~aLr~lNl~~N 110 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELA-----------------------AMPALRSLNLRFN 110 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHh-----------------------hhHHhhhcccccC
Confidence 4555566666666666555 33455556666665555555443 4444555555555
Q ss_pred CCcccCccccCCCccceecccc
Q 005709 394 ELERLPATIKQFSQLRYLYLRN 415 (681)
Q Consensus 394 ~l~~lp~~i~~L~~L~~L~L~~ 415 (681)
.+...|.-|..|.+|..|+..+
T Consensus 111 ~l~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 111 PLNAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred ccccchHHHHHHHhHHHhcCCC
Confidence 5555554444455555554444
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.51 E-value=4.4e-06 Score=73.65 Aligned_cols=104 Identities=13% Similarity=0.113 Sum_probs=78.2
Q ss_pred EeecCCCcccccC--HHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCC-CCCC
Q 005709 262 FFDLSKINYLHLS--PQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSF-EPNY 338 (681)
Q Consensus 262 ~l~~~~~~~~~~~--~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~ 338 (681)
.+|++.+....+. .-.+....+|...+|++|.+ ..+|+.+...++.++.|++++|.++.+|..+ .++.
T Consensus 31 ~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~f---------k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~a 101 (177)
T KOG4579|consen 31 FLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGF---------KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPA 101 (177)
T ss_pred hcccccchhhHHHHHHHHHhCCceEEEEecccchh---------hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHH
Confidence 4566666544332 23345667788889999985 5567777666678999999999999999999 9999
Q ss_pred ceEEEcCCCCcccccccccccccccccceecc--cCCcccC
Q 005709 339 LIELNLPYSKVEQIWIGEKKAFKLKFINLYNS--RYLTRLP 377 (681)
Q Consensus 339 L~~L~L~~n~l~~lp~~~~~l~~L~~L~~L~l--~~l~~lp 377 (681)
|+.|+++.|.+...|.-+.. |.+|-+|+. +....+|
T Consensus 102 Lr~lNl~~N~l~~~p~vi~~---L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 102 LRSLNLRFNPLNAEPRVIAP---LIKLDMLDSPENARAEID 139 (177)
T ss_pred hhhcccccCccccchHHHHH---HHhHHHhcCCCCccccCc
Confidence 99999999999988887766 666666666 4444454
No 53
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=5.6e-06 Score=82.00 Aligned_cols=96 Identities=21% Similarity=0.188 Sum_probs=55.0
Q ss_pred ceEEEcCCCCcc--cccccccccccccccceecc--cCCc-ccC-CCCCCCCCcEEEcc-cCCCcccCc--cccCCCccc
Q 005709 339 LIELNLPYSKVE--QIWIGEKKAFKLKFINLYNS--RYLT-RLP-EFSEIPNLERINLS-GSELERLPA--TIKQFSQLR 409 (681)
Q Consensus 339 L~~L~L~~n~l~--~lp~~~~~l~~L~~L~~L~l--~~l~-~lp-~~~~l~~L~~L~L~-~n~l~~lp~--~i~~L~~L~ 409 (681)
|++|||++..|+ ++-.-+.. +.+|+.|.+ ..+. .+- .+.+-.+|+.|+|+ ++.+++... -+.+++.|.
T Consensus 187 lq~lDLS~s~it~stl~~iLs~---C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQ---CSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHH---HHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 556666666554 33333344 555555555 1111 111 25667788888888 788875432 367788888
Q ss_pred eeccccccccCcCCCC-----CCCCCEEeccCC
Q 005709 410 YLYLRNCNMLQSLPEL-----PLLLSHLDASNC 437 (681)
Q Consensus 410 ~L~L~~c~~l~~lp~~-----l~~L~~L~l~~c 437 (681)
.|+++.|-.....-.. -+.|..|+++||
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~ 296 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGY 296 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhh
Confidence 8888887654432111 345666666665
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.20 E-value=0.00049 Score=65.04 Aligned_cols=104 Identities=17% Similarity=0.164 Sum_probs=64.1
Q ss_pred ccccccCccEEEecCCCCCCCCCCCCCCCceEEEcCCCCcccccccccccccccccceecc--cCCcccC---CCCCCCC
Q 005709 310 LEYLPKKLRYLHWHEYPLKTLPFSFEPNYLIELNLPYSKVEQIWIGEKKAFKLKFINLYNS--RYLTRLP---EFSEIPN 384 (681)
Q Consensus 310 l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~~L~l--~~l~~lp---~~~~l~~ 384 (681)
++..-++...+||++|.+..++..-.++.|.+|.|.+|.|+.+-..+..+ +++|+.|.+ |++.++- .+..+|.
T Consensus 37 lg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~--~p~l~~L~LtnNsi~~l~dl~pLa~~p~ 114 (233)
T KOG1644|consen 37 LGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTF--LPNLKTLILTNNSIQELGDLDPLASCPK 114 (233)
T ss_pred ccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhh--ccccceEEecCcchhhhhhcchhccCCc
Confidence 33334567778888888776665447788888888888888776555441 455666665 4444433 2556666
Q ss_pred CcEEEcccCCCcccCcc----ccCCCccceecccc
Q 005709 385 LERINLSGSELERLPAT----IKQFSQLRYLYLRN 415 (681)
Q Consensus 385 L~~L~L~~n~l~~lp~~----i~~L~~L~~L~L~~ 415 (681)
|++|.+-+|.++.-+.. +..+++|+.||..+
T Consensus 115 L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 115 LEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 66666666666544332 45555666665544
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.10 E-value=0.00018 Score=82.76 Aligned_cols=53 Identities=17% Similarity=0.278 Sum_probs=25.1
Q ss_pred CCCCceEEEcCCCCcccccccccccccccccceecccCCcccC-----CCCCCCCCcEEEcc
Q 005709 335 EPNYLIELNLPYSKVEQIWIGEKKAFKLKFINLYNSRYLTRLP-----EFSEIPNLERINLS 391 (681)
Q Consensus 335 ~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~~L~l~~l~~lp-----~~~~l~~L~~L~L~ 391 (681)
++++|..||+|+++++.+ .|+++ |++|+.|.+.++.-.+ ++-+|++|+.||+|
T Consensus 171 sFpNL~sLDIS~TnI~nl-~GIS~---LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS 228 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNL-SGISR---LKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDIS 228 (699)
T ss_pred ccCccceeecCCCCccCc-HHHhc---cccHHHHhccCCCCCchhhHHHHhcccCCCeeecc
Confidence 344555555555555544 34444 5555555442222111 24455555555555
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=0.00026 Score=70.48 Aligned_cols=180 Identities=16% Similarity=0.126 Sum_probs=87.1
Q ss_pred CCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCC----CCCCCCCCCceEEEcCCCCcc--ccc
Q 005709 280 NMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKT----LPFSFEPNYLIELNLPYSKVE--QIW 353 (681)
Q Consensus 280 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~----lp~~~~l~~L~~L~L~~n~l~--~lp 353 (681)
..++++.|+|.+|.++.|.+ +-.-++.+ +.|++|+++.|++.+ +| ..+.+|++|-|.++.+. ..-
T Consensus 69 ~~~~v~elDL~~N~iSdWse------I~~ile~l-P~l~~LNls~N~L~s~I~~lp--~p~~nl~~lVLNgT~L~w~~~~ 139 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSE------IGAILEQL-PALTTLNLSCNSLSSDIKSLP--LPLKNLRVLVLNGTGLSWTQST 139 (418)
T ss_pred HhhhhhhhhcccchhccHHH------HHHHHhcC-ccceEeeccCCcCCCccccCc--ccccceEEEEEcCCCCChhhhh
Confidence 45677777777777665522 22233445 567777777776553 33 35566777777766553 222
Q ss_pred ccccccccccccceecccCCcccCCCCCCCCCcEEEcccCCCcccCcc---ccCCCccceeccccccccCcCCCCCCCCC
Q 005709 354 IGEKKAFKLKFINLYNSRYLTRLPEFSEIPNLERINLSGSELERLPAT---IKQFSQLRYLYLRNCNMLQSLPELPLLLS 430 (681)
Q Consensus 354 ~~~~~l~~L~~L~~L~l~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~~---i~~L~~L~~L~L~~c~~l~~lp~~l~~L~ 430 (681)
..+.. ++.++.|++ ...+++.+++..+-++...+. +..++.+..+.++-|+..+-+| ++.
T Consensus 140 s~l~~---lP~vtelHm----------S~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fp----nv~ 202 (418)
T KOG2982|consen 140 SSLDD---LPKVTELHM----------SDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFP----NVN 202 (418)
T ss_pred hhhhc---chhhhhhhh----------ccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcc----cch
Confidence 22222 333333322 112223333332222222222 2223334444444444333333 344
Q ss_pred EEeccCC--------CCCcccCCCCCCccEEeccccccccccc-ccccCCCCCcEEEccCCccccccc
Q 005709 431 HLDASNC--------KRLQSLPEISSCLEELDISILEKLSKTT-FPIKHGCSLMQFEFQNCWELKENK 489 (681)
Q Consensus 431 ~L~l~~c--------~~l~~lp~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~c~~L~l~~ 489 (681)
.+-+..| ...+.+| .+.-|+|+.|++.+..+ ..+..+++|+.|.+++++-.+--.
T Consensus 203 sv~v~e~PlK~~s~ek~se~~p----~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 203 SVFVCEGPLKTESSEKGSEPFP----SLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred heeeecCcccchhhcccCCCCC----cchhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 4444443 2333333 34456666666654332 126677777878787777554433
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.83 E-value=0.00028 Score=81.19 Aligned_cols=77 Identities=14% Similarity=0.168 Sum_probs=35.7
Q ss_pred CCCceEEEcCCCCccc--ccccccccccccccceecc--cCCcccCCCCCCCCCcEEEcccCCCcccC--ccccCCCccc
Q 005709 336 PNYLIELNLPYSKVEQ--IWIGEKKAFKLKFINLYNS--RYLTRLPEFSEIPNLERINLSGSELERLP--ATIKQFSQLR 409 (681)
Q Consensus 336 l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~~L~l--~~l~~lp~~~~l~~L~~L~L~~n~l~~lp--~~i~~L~~L~ 409 (681)
+++|+.|.+++-.+.. +-.-.. ++++|..||+ .+++.+..++.+++|+.|.+.+-.+..-+ ..+.+|++|+
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~---sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCA---SFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred CcccceEEecCceecchhHHHHhh---ccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 4556666665544421 111112 2555555555 44444444555555555555544333221 1244555555
Q ss_pred eecccc
Q 005709 410 YLYLRN 415 (681)
Q Consensus 410 ~L~L~~ 415 (681)
.||+|.
T Consensus 224 vLDIS~ 229 (699)
T KOG3665|consen 224 VLDISR 229 (699)
T ss_pred eeeccc
Confidence 555554
No 58
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=5.6e-05 Score=75.09 Aligned_cols=148 Identities=21% Similarity=0.215 Sum_probs=71.0
Q ss_pred HhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCC-CCCCCCC--C-CCCCceEEEcCCCCcccc
Q 005709 277 AFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYP-LKTLPFS--F-EPNYLIELNLPYSKVEQI 352 (681)
Q Consensus 277 ~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~-l~~lp~~--~-~l~~L~~L~L~~n~l~~l 352 (681)
.++.+.+|+-|.+.++.+ ...+...+..- ..|+.|+++.+. ++...-. + +++.|..|+|+.+.+..-
T Consensus 205 iLs~C~kLk~lSlEg~~L--------dD~I~~~iAkN-~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~ 275 (419)
T KOG2120|consen 205 ILSQCSKLKNLSLEGLRL--------DDPIVNTIAKN-SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTE 275 (419)
T ss_pred HHHHHHhhhhcccccccc--------CcHHHHHHhcc-ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccch
Confidence 455667777777776654 33333333333 467777777764 3332111 2 566677777776654321
Q ss_pred --cccccccccccccceecc----cCCc--ccCC-CCCCCCCcEEEcc-cCCCcc-cCccccCCCccceeccccccccCc
Q 005709 353 --WIGEKKAFKLKFINLYNS----RYLT--RLPE-FSEIPNLERINLS-GSELER-LPATIKQFSQLRYLYLRNCNMLQS 421 (681)
Q Consensus 353 --p~~~~~l~~L~~L~~L~l----~~l~--~lp~-~~~l~~L~~L~L~-~n~l~~-lp~~i~~L~~L~~L~L~~c~~l~~ 421 (681)
--.+.+. =++|+.|++ .++. .+.. ...+++|..|||+ ++.++. .-..|.+++.|++|.++.|..+
T Consensus 276 ~Vtv~V~hi--se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i-- 351 (419)
T KOG2120|consen 276 KVTVAVAHI--SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI-- 351 (419)
T ss_pred hhhHHHhhh--chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--
Confidence 0001110 133444444 1111 1111 2455666666666 555542 2223555666666666665533
Q ss_pred CCCC------CCCCCEEeccCC
Q 005709 422 LPEL------PLLLSHLDASNC 437 (681)
Q Consensus 422 lp~~------l~~L~~L~l~~c 437 (681)
.|.. .++|.+|++.||
T Consensus 352 ~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 352 IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ChHHeeeeccCcceEEEEeccc
Confidence 1211 445555555554
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.33 E-value=0.0048 Score=58.47 Aligned_cols=60 Identities=23% Similarity=0.443 Sum_probs=35.6
Q ss_pred ccccceecc--cCCcccCCCCCCCCCcEEEcccCCCcccCccccC-CCccceeccccccccCcC
Q 005709 362 LKFINLYNS--RYLTRLPEFSEIPNLERINLSGSELERLPATIKQ-FSQLRYLYLRNCNMLQSL 422 (681)
Q Consensus 362 L~~L~~L~l--~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~~i~~-L~~L~~L~L~~c~~l~~l 422 (681)
+.+...+|| +.+..++.|..++.|.+|.|..|.|+.+.+.+.. +++|..|.|.+ +.+..+
T Consensus 41 ~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn-Nsi~~l 103 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN-NSIQEL 103 (233)
T ss_pred ccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecC-cchhhh
Confidence 334444555 4555555566677777777777777777665544 34566676666 334433
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.24 E-value=0.0032 Score=62.93 Aligned_cols=153 Identities=19% Similarity=0.167 Sum_probs=86.4
Q ss_pred HHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCC--CCCCCC-CCCCceEEEcCCCCccc
Q 005709 275 PQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLK--TLPFSF-EPNYLIELNLPYSKVEQ 351 (681)
Q Consensus 275 ~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~--~lp~~~-~l~~L~~L~L~~n~l~~ 351 (681)
...+.+|++|++|+++.|.++.. .+++|.. + .+|++|-|.+..+. ...+.. +++.+++|+++.|++.+
T Consensus 90 ~~ile~lP~l~~LNls~N~L~s~-----I~~lp~p---~-~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq 160 (418)
T KOG2982|consen 90 GAILEQLPALTTLNLSCNSLSSD-----IKSLPLP---L-KNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQ 160 (418)
T ss_pred HHHHhcCccceEeeccCCcCCCc-----cccCccc---c-cceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhh
Confidence 45578999999999998775221 2333311 1 68999999998754 344444 77788888888886654
Q ss_pred ccc---cccccccccccceecc-----------cCCcccCCCCCCCCCcEEEcccCCCcccCc--cccCCCccceecccc
Q 005709 352 IWI---GEKKAFKLKFINLYNS-----------RYLTRLPEFSEIPNLERINLSGSELERLPA--TIKQFSQLRYLYLRN 415 (681)
Q Consensus 352 lp~---~~~~l~~L~~L~~L~l-----------~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~--~i~~L~~L~~L~L~~ 415 (681)
+-. ....+ -+.++++.. +++.. -++++..+.+..+.+..... +...++.+..|+|+.
T Consensus 161 ~n~Dd~c~e~~--s~~v~tlh~~~c~~~~w~~~~~l~r-----~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~ 233 (418)
T KOG2982|consen 161 LNLDDNCIEDW--STEVLTLHQLPCLEQLWLNKNKLSR-----IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGA 233 (418)
T ss_pred hcccccccccc--chhhhhhhcCCcHHHHHHHHHhHHh-----hcccchheeeecCcccchhhcccCCCCCcchhhhhcc
Confidence 311 11110 111222221 22221 24566666666555554322 345556666777766
Q ss_pred ccccCcCCCC-----CCCCCEEeccCCCCCcccC
Q 005709 416 CNMLQSLPEL-----PLLLSHLDASNCKRLQSLP 444 (681)
Q Consensus 416 c~~l~~lp~~-----l~~L~~L~l~~c~~l~~lp 444 (681)
+++.+.... +++|..|.+++++....+-
T Consensus 234 -~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 234 -NNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred -cccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 444444332 6677777777766555443
No 61
>COG3903 Predicted ATPase [General function prediction only]
Probab=95.78 E-value=0.0053 Score=64.51 Aligned_cols=212 Identities=22% Similarity=0.264 Sum_probs=143.9
Q ss_pred HHHHHHhCCCeEEEEEECcChh---HHHhhcCCCCCCCCcEEEEEeCCchhhhccCCceEEEcCCCCHH-HHHHHHHHHh
Q 005709 14 PNIKKRLQQRKVLIVLDDVDDN---SKNFAGGLELFSPGSRIIITTRDKRLLDKRRVENVYEVKGLKHN-SALELFCRKA 89 (681)
Q Consensus 14 ~~i~~~L~~kr~LiVLDdv~~~---~~~l~~~~~~~~~gSrIivTTR~~~v~~~~~~~~~~~l~~L~~~-e~~~Lf~~~a 89 (681)
..+..+..++|.++|+||.... -..+...+....+.-+|+.|+|+.-... .+..+.+++|+.. ++.++|...|
T Consensus 79 ~~~~~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~---ge~~~~~~~L~~~d~a~~lf~~ra 155 (414)
T COG3903 79 DTLVRRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVA---GEVHRRVPSLSLFDEAIELFVCRA 155 (414)
T ss_pred HHHHHHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhccc---ccccccCCccccCCchhHHHHHHH
Confidence 3567788899999999998776 1122222222345567888988764332 3457788888865 7999998876
Q ss_pred ccCCC---CChhHHHHHHHHHHHcCCChhHHHHHHhhhcCCCHHHHHHHHHH----hhh------cCChhHHHHHHHHhc
Q 005709 90 FRQNN---RSPDLLELSEEVAHYANGNPLALQVLGSSLYQKSKEQWKDKLRK----LKL------ITDPNIYKVLKISYD 156 (681)
Q Consensus 90 f~~~~---~~~~~~~~~~~i~~~c~GlPLai~~~g~~L~~k~~~~w~~~l~~----l~~------~~~~~i~~~l~~sy~ 156 (681)
..... ....-.....+|.++..|.|++|...++..+.....+-..-+.. +.. -........+.+||.
T Consensus 156 ~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~ 235 (414)
T COG3903 156 VLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYA 235 (414)
T ss_pred HHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhH
Confidence 43221 12233556788999999999999999999998766554443332 111 112456788999999
Q ss_pred CCCHHHHHHHhhhcccCCCCCHHHHHHhhcCC-C-----chhhhHHHHhhccceeEe----CCeEeehHHHHHHHHHHhh
Q 005709 157 GLNWEEKEIFLDVACFFKGEDVDFVTRVQDDP-T-----SMHNGLNTLVEMSLITIS----ANRLQMHDILQELGKTIIL 226 (681)
Q Consensus 157 ~L~~~~k~cfl~~a~Fp~~~~~~~~~~i~~~~-~-----~~~~~~~~L~~~sli~~~----~~~~~mHdll~~~~~~i~~ 226 (681)
-|....+--|-.++.|..++..+.....+-|- + ..-..+..+++++++... ..+++.-+-++.|+.....
T Consensus 236 lLtgwe~~~~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~ 315 (414)
T COG3903 236 LLTGWERALFGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELH 315 (414)
T ss_pred hhhhHHHHHhcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988887655544433 2 223336778999998654 2345666666777666654
Q ss_pred hc
Q 005709 227 QE 228 (681)
Q Consensus 227 ~e 228 (681)
+.
T Consensus 316 r~ 317 (414)
T COG3903 316 RS 317 (414)
T ss_pred hh
Confidence 43
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.66 E-value=0.037 Score=49.39 Aligned_cols=103 Identities=18% Similarity=0.235 Sum_probs=44.6
Q ss_pred cCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCC-C-CCCCceEEEcCCCCcc
Q 005709 273 LSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFS-F-EPNYLIELNLPYSKVE 350 (681)
Q Consensus 273 ~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~l~ 350 (681)
+...+|.++++|+.+.+.. . ...++.......++|+.+.+..+ +..++.. | +..+|+.+.+.. .+.
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~---------~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~ 70 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-T---------IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK 70 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T-----------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-
T ss_pred ECHHHHhCCCCCCEEEECC-C---------eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc
Confidence 3455777777888877763 2 23444444443356777777664 6666655 3 555677777754 444
Q ss_pred ccccc-ccccccccccceecc-cCCcccCC--CCCCCCCcEEEcc
Q 005709 351 QIWIG-EKKAFKLKFINLYNS-RYLTRLPE--FSEIPNLERINLS 391 (681)
Q Consensus 351 ~lp~~-~~~l~~L~~L~~L~l-~~l~~lp~--~~~l~~L~~L~L~ 391 (681)
.++.. +.. +++|+.+++ ..+..++. |.+. +|+.+.+.
T Consensus 71 ~i~~~~F~~---~~~l~~i~~~~~~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 71 SIGDNAFSN---CTNLKNIDIPSNITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp EE-TTTTTT----TTECEEEETTT-BEEHTTTTTT--T--EEE-T
T ss_pred ccccccccc---cccccccccCccccEEchhhhcCC-CceEEEEC
Confidence 44322 222 445555555 33444442 4444 55554443
No 63
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.65 E-value=0.16 Score=51.82 Aligned_cols=103 Identities=13% Similarity=0.161 Sum_probs=66.1
Q ss_pred CCCeEEEEEECcChh----HHHhh---cCCCCCCCCcEEEEEeCCchhhhcc----------CCceEEEcCCCCHHHHHH
Q 005709 21 QQRKVLIVLDDVDDN----SKNFA---GGLELFSPGSRIIITTRDKRLLDKR----------RVENVYEVKGLKHNSALE 83 (681)
Q Consensus 21 ~~kr~LiVLDdv~~~----~~~l~---~~~~~~~~gSrIivTTR~~~v~~~~----------~~~~~~~l~~L~~~e~~~ 83 (681)
.+++++||+||++.. ++.+. ......+..-.|++|.... +.... .....+++++++.+|..+
T Consensus 121 ~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~ 199 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETRE 199 (269)
T ss_pred CCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHHH
Confidence 678899999999875 44432 2221222233455555432 21111 123478999999999999
Q ss_pred HHHHHhccCCC--CChhHHHHHHHHHHHcCCChhHHHHHHhhh
Q 005709 84 LFCRKAFRQNN--RSPDLLELSEEVAHYANGNPLALQVLGSSL 124 (681)
Q Consensus 84 Lf~~~af~~~~--~~~~~~~~~~~i~~~c~GlPLai~~~g~~L 124 (681)
++...+-.... ...--.+....|++.++|.|..|..++..+
T Consensus 200 ~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 200 YIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 98877632221 111124678899999999999999988776
No 64
>PRK06893 DNA replication initiation factor; Validated
Probab=95.56 E-value=0.035 Score=55.48 Aligned_cols=91 Identities=15% Similarity=0.228 Sum_probs=58.9
Q ss_pred EEEEEECcChh-----HH-HhhcCCCC-CCCCcEEEEEeCC----------chhhhccCCceEEEcCCCCHHHHHHHHHH
Q 005709 25 VLIVLDDVDDN-----SK-NFAGGLEL-FSPGSRIIITTRD----------KRLLDKRRVENVYEVKGLKHNSALELFCR 87 (681)
Q Consensus 25 ~LiVLDdv~~~-----~~-~l~~~~~~-~~~gSrIivTTR~----------~~v~~~~~~~~~~~l~~L~~~e~~~Lf~~ 87 (681)
-+|||||+|.. |+ .+...+.. ...|+.|||+|.+ +++...++....+++++++.++.++++.+
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~ 172 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQR 172 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHH
Confidence 48999999863 44 22222211 1246666555543 46666666677999999999999999999
Q ss_pred HhccCCC-CChhHHHHHHHHHHHcCCChhHHH
Q 005709 88 KAFRQNN-RSPDLLELSEEVAHYANGNPLALQ 118 (681)
Q Consensus 88 ~af~~~~-~~~~~~~~~~~i~~~c~GlPLai~ 118 (681)
.++...- .+ +++..-+++++.|-.-++.
T Consensus 173 ~a~~~~l~l~---~~v~~~L~~~~~~d~r~l~ 201 (229)
T PRK06893 173 NAYQRGIELS---DEVANFLLKRLDRDMHTLF 201 (229)
T ss_pred HHHHcCCCCC---HHHHHHHHHhccCCHHHHH
Confidence 9875432 22 3455667777766554443
No 65
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.53 E-value=0.0053 Score=60.65 Aligned_cols=103 Identities=20% Similarity=0.215 Sum_probs=65.8
Q ss_pred CCCCCCCcEEEcccCCCc-ccCcc----ccCCCccceeccccccccCcCCCC-----------------CCCCCEEeccC
Q 005709 379 FSEIPNLERINLSGSELE-RLPAT----IKQFSQLRYLYLRNCNMLQSLPEL-----------------PLLLSHLDASN 436 (681)
Q Consensus 379 ~~~l~~L~~L~L~~n~l~-~lp~~----i~~L~~L~~L~L~~c~~l~~lp~~-----------------l~~L~~L~l~~ 436 (681)
+-++|.|+..+||.|-+. +.|+. |++-+.|.+|.|++|. ++.+... -+.|+......
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 557788888888877766 34443 5666778888888743 5544332 45677777766
Q ss_pred CCCCcccCCCCC--------CccEEeccccccccc-----ccccccCCCCCcEEEccCCc
Q 005709 437 CKRLQSLPEISS--------CLEELDISILEKLSK-----TTFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 437 c~~l~~lp~~~~--------~L~~L~l~~n~l~~~-----~~~~l~~l~~L~~L~l~~c~ 483 (681)
+.+...|.... +|+.+.+..|.|..- ..-.+..+.+|+.|++.+|.
T Consensus 167 -NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt 225 (388)
T COG5238 167 -NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT 225 (388)
T ss_pred -chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc
Confidence 45555554321 788888888877532 11124566788888887765
No 66
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.35 E-value=0.0072 Score=35.98 Aligned_cols=22 Identities=36% Similarity=0.753 Sum_probs=17.2
Q ss_pred CCcEEEcccCCCcccCccccCC
Q 005709 384 NLERINLSGSELERLPATIKQF 405 (681)
Q Consensus 384 ~L~~L~L~~n~l~~lp~~i~~L 405 (681)
+|++|+|++|+++.+|++|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5788899988888888877654
No 67
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=95.27 E-value=0.35 Score=50.48 Aligned_cols=145 Identities=15% Similarity=0.122 Sum_probs=87.3
Q ss_pred CcEEEEEeCCchhhhcc--CCceEEEcCCCCHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHcCCChhHHHHHHhhhc-
Q 005709 49 GSRIIITTRDKRLLDKR--RVENVYEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGSSLY- 125 (681)
Q Consensus 49 gSrIivTTR~~~v~~~~--~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~L~- 125 (681)
..-|.+|||...+.... .....+++++++.+|..+++.+.+-..... --.+....|++.|+|.|-.+..++..+.
T Consensus 130 ~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~--~~~~al~~ia~~~~G~pR~~~~ll~~~~~ 207 (305)
T TIGR00635 130 FTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVE--IEPEAALEIARRSRGTPRIANRLLRRVRD 207 (305)
T ss_pred eEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCC--cCHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 45566677765444332 123478999999999999999887532221 1134567899999999976655554321
Q ss_pred -----C---CCHHHHHHHHHHhhhcCChhHHHHHHHHhcCCCHHHHHHHh-hhcccCCC-CCHHHHHHhhcCC-Cchhhh
Q 005709 126 -----Q---KSKEQWKDKLRKLKLITDPNIYKVLKISYDGLNWEEKEIFL-DVACFFKG-EDVDFVTRVQDDP-TSMHNG 194 (681)
Q Consensus 126 -----~---k~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~cfl-~~a~Fp~~-~~~~~~~~i~~~~-~~~~~~ 194 (681)
+ .+.+..+ .....+...|.++++.++..+. .++.+..+ ...+.+...+.-- ..++..
T Consensus 208 ~a~~~~~~~it~~~v~------------~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~ 275 (305)
T TIGR00635 208 FAQVRGQKIINRDIAL------------KALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDV 275 (305)
T ss_pred HHHHcCCCCcCHHHHH------------HHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHh
Confidence 0 0111111 1222356678899998888666 44555432 3333333333222 555666
Q ss_pred HH-HHhhccceeEe
Q 005709 195 LN-TLVEMSLITIS 207 (681)
Q Consensus 195 ~~-~L~~~sli~~~ 207 (681)
++ .|++++||+..
T Consensus 276 ~e~~Li~~~li~~~ 289 (305)
T TIGR00635 276 YEPYLLQIGFLQRT 289 (305)
T ss_pred hhHHHHHcCCcccC
Confidence 77 69999999754
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.26 E-value=0.0089 Score=59.01 Aligned_cols=101 Identities=27% Similarity=0.300 Sum_probs=56.5
Q ss_pred cCccEEEecCCCCCCCCCCCCCCCceEEEcCCCCcccccccccccccccccceecccCCcccCC-CCCCCCCcEEEcccC
Q 005709 315 KKLRYLHWHEYPLKTLPFSFEPNYLIELNLPYSKVEQIWIGEKKAFKLKFINLYNSRYLTRLPE-FSEIPNLERINLSGS 393 (681)
Q Consensus 315 ~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~~L~l~~l~~lp~-~~~l~~L~~L~L~~n 393 (681)
..|+.|.+.+..++++-....+++|++|.++.|..... ..++- ...+++|++|++++|
T Consensus 43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~---------------------~~l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVS---------------------GGLEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred cchhhhhhhccceeecccCCCcchhhhhcccCCccccc---------------------ccceehhhhCCceeEEeecCC
Confidence 34555555555555443333556666666666633211 01111 234477888888877
Q ss_pred CCcccC--ccccCCCccceeccccccccCcCCCC-------CCCCCEEeccCC
Q 005709 394 ELERLP--ATIKQFSQLRYLYLRNCNMLQSLPEL-------PLLLSHLDASNC 437 (681)
Q Consensus 394 ~l~~lp--~~i~~L~~L~~L~L~~c~~l~~lp~~-------l~~L~~L~l~~c 437 (681)
.+..+. ..+..+.+|..|++.+|.... +-.- +++|++|+-..+
T Consensus 102 ki~~lstl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 102 KIKDLSTLRPLKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred ccccccccchhhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhcccccccc
Confidence 776421 125667777888888776443 2221 778888876554
No 69
>PF05729 NACHT: NACHT domain
Probab=95.09 E-value=0.049 Score=50.83 Aligned_cols=69 Identities=19% Similarity=0.436 Sum_probs=48.5
Q ss_pred CCCeEEEEEECcChh---HH--------H-hhcCCC-CCCCCcEEEEEeCCchh---hhccCCceEEEcCCCCHHHHHHH
Q 005709 21 QQRKVLIVLDDVDDN---SK--------N-FAGGLE-LFSPGSRIIITTRDKRL---LDKRRVENVYEVKGLKHNSALEL 84 (681)
Q Consensus 21 ~~kr~LiVLDdv~~~---~~--------~-l~~~~~-~~~~gSrIivTTR~~~v---~~~~~~~~~~~l~~L~~~e~~~L 84 (681)
+.++++||+|+++.. -. . +..-+. ...++.+||||+|.... .........++++++++++..++
T Consensus 79 ~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (166)
T PF05729_consen 79 KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQY 158 (166)
T ss_pred cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHH
Confidence 578999999999765 11 1 111111 12578999999998866 33334446899999999999998
Q ss_pred HHHHh
Q 005709 85 FCRKA 89 (681)
Q Consensus 85 f~~~a 89 (681)
+.++.
T Consensus 159 ~~~~f 163 (166)
T PF05729_consen 159 LRKYF 163 (166)
T ss_pred HHHHh
Confidence 86653
No 70
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=94.80 E-value=0.082 Score=55.94 Aligned_cols=150 Identities=15% Similarity=0.094 Sum_probs=89.6
Q ss_pred CcEEEEEeCCchhhhcc--CCceEEEcCCCCHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHcCCChhHHHHHHhhhcC
Q 005709 49 GSRIIITTRDKRLLDKR--RVENVYEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGSSLYQ 126 (681)
Q Consensus 49 gSrIivTTR~~~v~~~~--~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~L~~ 126 (681)
.+-|..|||...+.... .....+++++++.++..+++.+.+-...-. --.+.+..|++.|+|.|-.+..+...+
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~--~~~~~~~~ia~~~~G~pR~a~~~l~~~-- 226 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVE--IDEEGALEIARRSRGTPRIANRLLRRV-- 226 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHcCCCchHHHHHHHHH--
Confidence 44566777755444332 123478999999999999999887543321 123567899999999996544444322
Q ss_pred CCHHHHHHHHHHhhhcCC----hhHHHHHHHHhcCCCHHHHHHHh-hhcccCCC-CCHHHHHHhh-cCCCchhhhHH-HH
Q 005709 127 KSKEQWKDKLRKLKLITD----PNIYKVLKISYDGLNWEEKEIFL-DVACFFKG-EDVDFVTRVQ-DDPTSMHNGLN-TL 198 (681)
Q Consensus 127 k~~~~w~~~l~~l~~~~~----~~i~~~l~~sy~~L~~~~k~cfl-~~a~Fp~~-~~~~~~~~i~-~~~~~~~~~~~-~L 198 (681)
..|..... ..... ......+...|..|++..+..+. ....|..+ ...+.+...+ .....++.-++ .|
T Consensus 227 ---~~~a~~~~--~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~L 301 (328)
T PRK00080 227 ---RDFAQVKG--DGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYL 301 (328)
T ss_pred ---HHHHHHcC--CCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHH
Confidence 11211110 00111 12344566778899998888775 55566544 2334443333 22255666677 89
Q ss_pred hhccceeEe
Q 005709 199 VEMSLITIS 207 (681)
Q Consensus 199 ~~~sli~~~ 207 (681)
++.+||+..
T Consensus 302 i~~~li~~~ 310 (328)
T PRK00080 302 IQQGFIQRT 310 (328)
T ss_pred HHcCCcccC
Confidence 999999754
No 71
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.66 E-value=0.36 Score=55.53 Aligned_cols=203 Identities=16% Similarity=0.195 Sum_probs=123.9
Q ss_pred chHHHHHHhC--CCeEEEEEECcC---hh-----HHHhhcCCCCCCCCcEEEEEeCCch---hhhccCCceEEEcC----
Q 005709 12 ITPNIKKRLQ--QRKVLIVLDDVD---DN-----SKNFAGGLELFSPGSRIIITTRDKR---LLDKRRVENVYEVK---- 74 (681)
Q Consensus 12 ~~~~i~~~L~--~kr~LiVLDdv~---~~-----~~~l~~~~~~~~~gSrIivTTR~~~---v~~~~~~~~~~~l~---- 74 (681)
+.+.+-..|. .+...+||||-. +. ++.+.... .++=.+|||||..- ++.---.+...++.
T Consensus 116 l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~---P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~L 192 (894)
T COG2909 116 LLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHA---PENLTLVVTSRSRPQLGLARLRLRDELLEIGSEEL 192 (894)
T ss_pred HHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhC---CCCeEEEEEeccCCCCcccceeehhhHHhcChHhh
Confidence 3344444443 367899999964 22 55665554 37778999999872 22211112233333
Q ss_pred CCCHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHcCCChhHHHHHHhhhcC-CCHHHHHHHHHHhhhcCChhHHH-HHH
Q 005709 75 GLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGSSLYQ-KSKEQWKDKLRKLKLITDPNIYK-VLK 152 (681)
Q Consensus 75 ~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~L~~-k~~~~w~~~l~~l~~~~~~~i~~-~l~ 152 (681)
.++.+|+-++|.......-. ..-++.+.++..|-+-|+..++=.+++ .+.+.--..+... .+.+.+ ...
T Consensus 193 rf~~eE~~~fl~~~~~l~Ld-----~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG~----~~~l~dYL~e 263 (894)
T COG2909 193 RFDTEEAAAFLNDRGSLPLD-----AADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSGA----ASHLSDYLVE 263 (894)
T ss_pred cCChHHHHHHHHHcCCCCCC-----hHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccch----HHHHHHHHHH
Confidence 37889999998876522111 233577888889999999988888874 3433322222211 111111 122
Q ss_pred HHhcCCCHHHHHHHhhhcccCCCCCHHHHHHhhcCCCchhhhHHHHhhccceeEe----CCeEeehHHHHHHHHHHhhhc
Q 005709 153 ISYDGLNWEEKEIFLDVACFFKGEDVDFVTRVQDDPTSMHNGLNTLVEMSLITIS----ANRLQMHDILQELGKTIILQE 228 (681)
Q Consensus 153 ~sy~~L~~~~k~cfl~~a~Fp~~~~~~~~~~i~~~~~~~~~~~~~L~~~sli~~~----~~~~~mHdll~~~~~~i~~~e 228 (681)
-=+|.||++.|.-.+-+|+++.-.. ....-+-|...+..-+++|..++++-.. ++.|+.|.+..|+-+.-...+
T Consensus 264 eVld~Lp~~l~~FLl~~svl~~f~~--eL~~~Ltg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 264 EVLDRLPPELRDFLLQTSVLSRFND--ELCNALTGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred HHHhcCCHHHHHHHHHHHhHHHhhH--HHHHHHhcCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccc
Confidence 2358899999999999998743111 1111122334445568999999988654 678999999999987666554
No 72
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.48 E-value=0.023 Score=56.12 Aligned_cols=60 Identities=27% Similarity=0.465 Sum_probs=40.8
Q ss_pred CCCCCCCCcEEEcccC--CCc-ccCccccCCCccceeccccccccC---cCCCC--CCCCCEEeccCCC
Q 005709 378 EFSEIPNLERINLSGS--ELE-RLPATIKQFSQLRYLYLRNCNMLQ---SLPEL--PLLLSHLDASNCK 438 (681)
Q Consensus 378 ~~~~l~~L~~L~L~~n--~l~-~lp~~i~~L~~L~~L~L~~c~~l~---~lp~~--l~~L~~L~l~~c~ 438 (681)
.+..|++|++|.+++| .+. .++....++++|++|++++|+ ++ ++++. +.+|..|++.+|.
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhhhhcchhhhhcccCC
Confidence 3556789999999988 444 566666677999999999844 43 33332 5566666666653
No 73
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.37 E-value=0.0023 Score=63.41 Aligned_cols=95 Identities=19% Similarity=0.237 Sum_probs=52.9
Q ss_pred cCccEEEecCCCCCCCCCCCCCCCceEEEcCCCCcccccccccccccccccceecccCCcccCCCCCCCCCcEEEcccCC
Q 005709 315 KKLRYLHWHEYPLKTLPFSFEPNYLIELNLPYSKVEQIWIGEKKAFKLKFINLYNSRYLTRLPEFSEIPNLERINLSGSE 394 (681)
Q Consensus 315 ~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~~L~l~~l~~lp~~~~l~~L~~L~L~~n~ 394 (681)
.+.+.|+.-+|.++.+.-.-.++.|++|.|+-|+|+.+ ..+..+++|+.|+|..|.
T Consensus 19 ~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL------------------------~pl~rCtrLkElYLRkN~ 74 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL------------------------APLQRCTRLKELYLRKNC 74 (388)
T ss_pred HHhhhhcccCCCccHHHHHHhcccceeEEeeccccccc------------------------hhHHHHHHHHHHHHHhcc
Confidence 34566777777776654433666677777776666554 223445555555555555
Q ss_pred CcccCc--cccCCCccceeccccccccCcCCCC--------CCCCCEEe
Q 005709 395 LERLPA--TIKQFSQLRYLYLRNCNMLQSLPEL--------PLLLSHLD 433 (681)
Q Consensus 395 l~~lp~--~i~~L~~L~~L~L~~c~~l~~lp~~--------l~~L~~L~ 433 (681)
|..+.+ .+.+|++|+.|.|..|.-.+.-+.. |++|+.||
T Consensus 75 I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 75 IESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 554432 2556666666666654444433332 55555554
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.77 E-value=0.16 Score=45.18 Aligned_cols=74 Identities=18% Similarity=0.273 Sum_probs=26.5
Q ss_pred CCCCceEEEcCCCCccccccc-ccccccccccceecc-cCCcccCC--CCCCCCCcEEEcccCCCcccCcc-ccCCCccc
Q 005709 335 EPNYLIELNLPYSKVEQIWIG-EKKAFKLKFINLYNS-RYLTRLPE--FSEIPNLERINLSGSELERLPAT-IKQFSQLR 409 (681)
Q Consensus 335 ~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~~L~l-~~l~~lp~--~~~l~~L~~L~L~~n~l~~lp~~-i~~L~~L~ 409 (681)
+..+|+.+.+.. .++.++.. +.. +++|+.+.+ ..+..+++ |.++++|+.+.+.. .+..++.. +.++++|+
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~---~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSN---CTSLKSINFPNNLTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT----TT-SEEEESSTTSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred CCCCCCEEEECC-CeeEeChhhccc---ccccccccccccccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 445566666653 34444333 222 444555544 33444443 44444455555532 33333332 33344444
Q ss_pred eecc
Q 005709 410 YLYL 413 (681)
Q Consensus 410 ~L~L 413 (681)
.+.+
T Consensus 85 ~i~~ 88 (129)
T PF13306_consen 85 NIDI 88 (129)
T ss_dssp EEEE
T ss_pred cccc
Confidence 4444
No 75
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=93.38 E-value=0.26 Score=48.76 Aligned_cols=104 Identities=24% Similarity=0.220 Sum_probs=54.2
Q ss_pred HHHHHHhC--CCeEEEEEECcChh-------------HHHhhcCCCCCCCCcEEEEEeCCchhhhc--------cCCceE
Q 005709 14 PNIKKRLQ--QRKVLIVLDDVDDN-------------SKNFAGGLELFSPGSRIIITTRDKRLLDK--------RRVENV 70 (681)
Q Consensus 14 ~~i~~~L~--~kr~LiVLDdv~~~-------------~~~l~~~~~~~~~gSrIivTTR~~~v~~~--------~~~~~~ 70 (681)
..+-+.+. +++++||+||+... +..+........+. .+|+++....+... .+....
T Consensus 107 ~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~v~~~S~~~~~~~~~~~~~~~~~~~~~ 185 (234)
T PF01637_consen 107 ERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV-SIVITGSSDSLMEEFLDDKSPLFGRFSH 185 (234)
T ss_dssp HHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE-EEEEEESSHHHHHHTT-TTSTTTT---E
T ss_pred HHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc-eEEEECCchHHHHHhhcccCccccccce
Confidence 33444443 34599999997543 22222222222233 45555555544433 122345
Q ss_pred EEcCCCCHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHcCCChhHHHH
Q 005709 71 YEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQV 119 (681)
Q Consensus 71 ~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 119 (681)
+.+++++.+++++++...+-..... +.-.+..++|...+||.|..|..
T Consensus 186 ~~l~~l~~~e~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 186 IELKPLSKEEAREFLKELFKELIKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred EEEeeCCHHHHHHHHHHHHHHhhcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 9999999999999999865332111 12244558999999999988753
No 76
>COG3899 Predicted ATPase [General function prediction only]
Probab=93.31 E-value=0.86 Score=54.40 Aligned_cols=207 Identities=16% Similarity=0.237 Sum_probs=130.6
Q ss_pred HHHHh-CCCeEEEEEECcChh-------HHHhhcCCCC-CCCCcEEE--EEeCCc--hhhhccCCceEEEcCCCCHHHHH
Q 005709 16 IKKRL-QQRKVLIVLDDVDDN-------SKNFAGGLEL-FSPGSRII--ITTRDK--RLLDKRRVENVYEVKGLKHNSAL 82 (681)
Q Consensus 16 i~~~L-~~kr~LiVLDdv~~~-------~~~l~~~~~~-~~~gSrIi--vTTR~~--~v~~~~~~~~~~~l~~L~~~e~~ 82 (681)
|.... +.|+..+|+||+.=. ++.+.....- .-....|. .|.+.. .+-..-.....+.+.||+..|.-
T Consensus 146 i~~~~~~~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~ 225 (849)
T COG3899 146 IQVFTAEEHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTN 225 (849)
T ss_pred HHHHHhccCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHH
Confidence 33344 346999999999321 4444443320 00011222 222222 11122223468999999999999
Q ss_pred HHHHHHhccCCCCChhHHHHHHHHHHHcCCChhHHHHHHhhhcCC-------CHHHHHHHHHHhhhcCC-hhHHHHHHHH
Q 005709 83 ELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGSSLYQK-------SKEQWKDKLRKLKLITD-PNIYKVLKIS 154 (681)
Q Consensus 83 ~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~L~~k-------~~~~w~~~l~~l~~~~~-~~i~~~l~~s 154 (681)
.+.......... .-.+....|.++.+|.|+-+.-+-..++.. +...|+.-..++...+. +++.+.+...
T Consensus 226 ~lV~~~l~~~~~---~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~r 302 (849)
T COG3899 226 QLVAATLGCTKL---LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAAR 302 (849)
T ss_pred HHHHHHhCCccc---ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHH
Confidence 998877644222 235567889999999999999888888752 44556655555443322 3356678999
Q ss_pred hcCCCHHHHHHHhhhcccCCCCCHHHHHHhhcCC--CchhhhHHHHhhccceeEe--------CCeE---eehHHHHHHH
Q 005709 155 YDGLNWEEKEIFLDVACFFKGEDVDFVTRVQDDP--TSMHNGLNTLVEMSLITIS--------ANRL---QMHDILQELG 221 (681)
Q Consensus 155 y~~L~~~~k~cfl~~a~Fp~~~~~~~~~~i~~~~--~~~~~~~~~L~~~sli~~~--------~~~~---~mHdll~~~~ 221 (681)
.+.||...|...-..||+-+.++.+.+..+.+.. ..+....+.|....++..+ .... -.||++++.+
T Consensus 303 l~kL~~~t~~Vl~~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaa 382 (849)
T COG3899 303 LQKLPGTTREVLKAAACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAA 382 (849)
T ss_pred HhcCCHHHHHHHHHHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHH
Confidence 9999999999999999999999888877777654 3444445555554444321 1111 4688888876
Q ss_pred HHHh
Q 005709 222 KTII 225 (681)
Q Consensus 222 ~~i~ 225 (681)
-...
T Consensus 383 Y~~i 386 (849)
T COG3899 383 YNLI 386 (849)
T ss_pred hccC
Confidence 5443
No 77
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.11 E-value=0.0058 Score=60.63 Aligned_cols=80 Identities=26% Similarity=0.320 Sum_probs=60.0
Q ss_pred ccccceecc--cCCcccCCCCCCCCCcEEEcccCCCcccCccccCCCccceeccccccccCcCCCC-----CCCCCEEec
Q 005709 362 LKFINLYNS--RYLTRLPEFSEIPNLERINLSGSELERLPATIKQFSQLRYLYLRNCNMLQSLPEL-----PLLLSHLDA 434 (681)
Q Consensus 362 L~~L~~L~l--~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~-----l~~L~~L~l 434 (681)
|.+.+.||+ ..+..|.-..+|+.|+.|.|+-|.|+.+- .+..+++|+.|+|+. |.+.++.+. +++|+.|.|
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhh
Confidence 555566666 44555544668999999999999999885 488999999999998 556666554 788888888
Q ss_pred cCCCCCccc
Q 005709 435 SNCKRLQSL 443 (681)
Q Consensus 435 ~~c~~l~~l 443 (681)
..|+-.+.-
T Consensus 96 ~ENPCc~~a 104 (388)
T KOG2123|consen 96 DENPCCGEA 104 (388)
T ss_pred ccCCccccc
Confidence 876544443
No 78
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.08 E-value=0.036 Score=54.99 Aligned_cols=165 Identities=21% Similarity=0.235 Sum_probs=74.6
Q ss_pred CceeecccCchhhHHhhcCcCCCcEEEEEeecCCCcc----cccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCcc
Q 005709 234 GKRSKLWDHKDVYQVLKKNKGTDAIEGIFFDLSKINY----LHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQD 309 (681)
Q Consensus 234 ~~~~~l~~~~~~~~vl~~~~~~~~v~~l~l~~~~~~~----~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~ 309 (681)
|+...+-..+|+..++..-.....+.. +++|++.. .......+.+-++|+..+++.-.... ....+++.
T Consensus 8 gk~lKl~T~eDvk~v~eel~~~d~~~e--vdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr-----~kde~~~~ 80 (388)
T COG5238 8 GKKLKLETKEDVKGVVEELEMMDELVE--VDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGR-----DKDELYSN 80 (388)
T ss_pred CceeeccccchhhHHHHHHHhhcceeE--EeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcc-----cHHHHHHH
Confidence 333334444555544444333333333 44554432 12223445566777777766422100 02223333
Q ss_pred cccc------ccCccEEEecCCCCCC-CCCC----C-CCCCceEEEcCCCCccccccc-ccccccccccceecccCCccc
Q 005709 310 LEYL------PKKLRYLHWHEYPLKT-LPFS----F-EPNYLIELNLPYSKVEQIWIG-EKKAFKLKFINLYNSRYLTRL 376 (681)
Q Consensus 310 l~~l------~~~L~~L~l~~~~l~~-lp~~----~-~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~~L~l~~l~~l 376 (681)
+..+ +++|+..+||.|.+.. .|+. + .-..|++|.|++|.+..+..+ ++. .|..|-+ .
T Consensus 81 L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~la~--------n 150 (388)
T COG5238 81 LVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFHLAY--------N 150 (388)
T ss_pred HHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHHHHH--------H
Confidence 2221 1466677777776553 3332 1 445677777777766543211 110 0000000 0
Q ss_pred CCCCCCCCCcEEEcccCCCcccCcc-----ccCCCccceecccc
Q 005709 377 PEFSEIPNLERINLSGSELERLPAT-----IKQFSQLRYLYLRN 415 (681)
Q Consensus 377 p~~~~l~~L~~L~L~~n~l~~lp~~-----i~~L~~L~~L~L~~ 415 (681)
-....-|.|++.....|.+...|.. +..-..|+.+.+..
T Consensus 151 KKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~q 194 (388)
T COG5238 151 KKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQ 194 (388)
T ss_pred hhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeee
Confidence 0134456677777777777655542 22223555555554
No 79
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.91 E-value=0.064 Score=31.83 Aligned_cols=21 Identities=29% Similarity=0.129 Sum_probs=14.3
Q ss_pred CccEEecccccccccccccccC
Q 005709 449 CLEELDISILEKLSKTTFPIKH 470 (681)
Q Consensus 449 ~L~~L~l~~n~l~~~~~~~l~~ 470 (681)
+|++|++++|.++.+|++ +++
T Consensus 1 ~L~~Ldls~n~l~~ip~~-~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSS-FSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTT-TTT
T ss_pred CccEEECCCCcCEeCChh-hcC
Confidence 467777777777777766 554
No 80
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=92.78 E-value=0.91 Score=48.61 Aligned_cols=94 Identities=15% Similarity=0.128 Sum_probs=61.0
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCCc-hhhhccC-CceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRDK-RLLDKRR-VENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~~-~~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
+++-++|+||++.. ...|...+..-..+..+|++|... .+...+. -...+.+.+++.++..+++...... .
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~--~- 216 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD--L- 216 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc--C-
Confidence 45668999999765 334443333334567777777766 4433322 2458999999999999999876421 1
Q ss_pred ChhHHHHHHHHHHHcCCChhHHHHHH
Q 005709 96 SPDLLELSEEVAHYANGNPLALQVLG 121 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPLai~~~g 121 (681)
.+ .. ...++..++|.|.....+.
T Consensus 217 ~~--~~-~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 217 PD--DP-RAALAALAEGSVGRALRLA 239 (365)
T ss_pred CH--HH-HHHHHHHcCCCHHHHHHHh
Confidence 11 11 2578899999998665543
No 81
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=92.48 E-value=0.003 Score=66.00 Aligned_cols=56 Identities=18% Similarity=0.209 Sum_probs=26.6
Q ss_pred CCCCcEEEcc-cCCCcccCc--cccCCCccceeccccccccCcC-----CCCCCCCCEEeccCC
Q 005709 382 IPNLERINLS-GSELERLPA--TIKQFSQLRYLYLRNCNMLQSL-----PELPLLLSHLDASNC 437 (681)
Q Consensus 382 l~~L~~L~L~-~n~l~~lp~--~i~~L~~L~~L~L~~c~~l~~l-----p~~l~~L~~L~l~~c 437 (681)
+..||.|+.+ +++++..+- -..+..+|+.|-+..|+.++.. -...+.|+.+++.+|
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~ 356 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEEC 356 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccc
Confidence 4455666655 555442211 1234455666666665543322 122445555555555
No 82
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=92.30 E-value=3.6 Score=44.58 Aligned_cols=151 Identities=16% Similarity=0.160 Sum_probs=89.4
Q ss_pred chHHHHHHhC--CCeEEEEEECcChh--------HHHhhcCCCCCCCCcE--EEEEeCCchhhhccC-------CceEEE
Q 005709 12 ITPNIKKRLQ--QRKVLIVLDDVDDN--------SKNFAGGLELFSPGSR--IIITTRDKRLLDKRR-------VENVYE 72 (681)
Q Consensus 12 ~~~~i~~~L~--~kr~LiVLDdv~~~--------~~~l~~~~~~~~~gSr--IivTTR~~~v~~~~~-------~~~~~~ 72 (681)
....+.+.++ ++..+||||+++.. +..+...... ..+++ ||.++.+.++..... ....+.
T Consensus 125 ~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~ 203 (394)
T PRK00411 125 LFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIY 203 (394)
T ss_pred HHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcchhhhcCHHHHhcCCcceee
Confidence 3455556664 45689999999763 3344332221 23444 677777665443321 124678
Q ss_pred cCCCCHHHHHHHHHHHh---ccCCCCCh-hHHHHHHHHHHHcCCChhHHHHHHhhh--c---C---CCHHHHHHHHHHhh
Q 005709 73 VKGLKHNSALELFCRKA---FRQNNRSP-DLLELSEEVAHYANGNPLALQVLGSSL--Y---Q---KSKEQWKDKLRKLK 140 (681)
Q Consensus 73 l~~L~~~e~~~Lf~~~a---f~~~~~~~-~~~~~~~~i~~~c~GlPLai~~~g~~L--~---~---k~~~~w~~~l~~l~ 140 (681)
+++++.++..+++...+ |......+ ..+.+++.+....|..+.|+.++-... . + -+.+.++.+++.+.
T Consensus 204 f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~ 283 (394)
T PRK00411 204 FPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSE 283 (394)
T ss_pred cCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH
Confidence 99999999999999876 32222223 334444444444566787877764322 1 1 25666776666652
Q ss_pred hcCChhHHHHHHHHhcCCCHHHHHHHhhhc
Q 005709 141 LITDPNIYKVLKISYDGLNWEEKEIFLDVA 170 (681)
Q Consensus 141 ~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a 170 (681)
.....-.+..||.++|..+.-++
T Consensus 284 -------~~~~~~~~~~L~~~~k~~L~ai~ 306 (394)
T PRK00411 284 -------IVHLSEVLRTLPLHEKLLLRAIV 306 (394)
T ss_pred -------HHHHHHHHhcCCHHHHHHHHHHH
Confidence 23344568899999988776655
No 83
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.47 E-value=0.13 Score=28.47 Aligned_cols=16 Identities=44% Similarity=0.754 Sum_probs=7.1
Q ss_pred CCcEEEcccCCCcccC
Q 005709 384 NLERINLSGSELERLP 399 (681)
Q Consensus 384 ~L~~L~L~~n~l~~lp 399 (681)
+|+.|+|++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4566666655565554
No 84
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.46 E-value=0.12 Score=28.58 Aligned_cols=16 Identities=38% Similarity=0.561 Sum_probs=5.8
Q ss_pred CccEEEecCCCCCCCC
Q 005709 316 KLRYLHWHEYPLKTLP 331 (681)
Q Consensus 316 ~L~~L~l~~~~l~~lp 331 (681)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3445555555444443
No 85
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=90.64 E-value=14 Score=39.40 Aligned_cols=187 Identities=15% Similarity=0.153 Sum_probs=101.8
Q ss_pred HHHHHHh--CCCeEEEEEECcChh-------HHHhhcCCCC-CC--CCcEEEEEeCCchhhhccC-------CceEEEcC
Q 005709 14 PNIKKRL--QQRKVLIVLDDVDDN-------SKNFAGGLEL-FS--PGSRIIITTRDKRLLDKRR-------VENVYEVK 74 (681)
Q Consensus 14 ~~i~~~L--~~kr~LiVLDdv~~~-------~~~l~~~~~~-~~--~gSrIivTTR~~~v~~~~~-------~~~~~~l~ 74 (681)
+.+.+.+ .+++++||||+++.. +..+.....+ .. ..-.+|.+|........+. ....++++
T Consensus 118 ~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~ 197 (365)
T TIGR02928 118 RRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFP 197 (365)
T ss_pred HHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeC
Confidence 3444555 356789999999876 2233222101 11 2234566665554322221 12468899
Q ss_pred CCCHHHHHHHHHHHhc---cCCCCChhHHHHHHHHHHHcCCChhHH-HHHHhhh--c---C---CCHHHHHHHHHHhhhc
Q 005709 75 GLKHNSALELFCRKAF---RQNNRSPDLLELSEEVAHYANGNPLAL-QVLGSSL--Y---Q---KSKEQWKDKLRKLKLI 142 (681)
Q Consensus 75 ~L~~~e~~~Lf~~~af---~~~~~~~~~~~~~~~i~~~c~GlPLai-~~~g~~L--~---~---k~~~~w~~~l~~l~~~ 142 (681)
+.+.++-.+++...+- ......++..+.+.+++....|.|-.+ ..+-... . + -+.+..+.+.+.+.
T Consensus 198 p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~-- 275 (365)
T TIGR02928 198 PYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIE-- 275 (365)
T ss_pred CCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH--
Confidence 9999999999998763 222233444455566777777887443 3322211 1 1 25556666655542
Q ss_pred CChhHHHHHHHHhcCCCHHHHHHHhhhcccCC--CCCH------HHHHHhhcCC-------CchhhhHHHHhhccceeEe
Q 005709 143 TDPNIYKVLKISYDGLNWEEKEIFLDVACFFK--GEDV------DFVTRVQDDP-------TSMHNGLNTLVEMSLITIS 207 (681)
Q Consensus 143 ~~~~i~~~l~~sy~~L~~~~k~cfl~~a~Fp~--~~~~------~~~~~i~~~~-------~~~~~~~~~L~~~sli~~~ 207 (681)
.....-...+||.++|..+..++..-+ +..+ +....+.+.. ......+..|...|+|+..
T Consensus 276 -----~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 276 -----KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDIGVDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred -----HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 233345667999998877666553222 1111 1111233321 2234557888888998865
No 86
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=90.00 E-value=0.02 Score=60.09 Aligned_cols=36 Identities=19% Similarity=0.283 Sum_probs=18.2
Q ss_pred CCccceeccccccccCcCCCC-----CCCCCEEeccCCCCC
Q 005709 405 FSQLRYLYLRNCNMLQSLPEL-----PLLLSHLDASNCKRL 440 (681)
Q Consensus 405 L~~L~~L~L~~c~~l~~lp~~-----l~~L~~L~l~~c~~l 440 (681)
+..|+.|..++|..+...+-. -.+|+.|.+++|..+
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~f 333 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQF 333 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchh
Confidence 445566666665553322211 455666666665543
No 87
>PF14516 AAA_35: AAA-like domain
Probab=88.08 E-value=13 Score=39.29 Aligned_cols=127 Identities=15% Similarity=0.138 Sum_probs=72.2
Q ss_pred CceEEEcCCCCHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHcCCChhHHHHHHhhhcCCCHHHHHHHHHHhhhcCChh
Q 005709 67 VENVYEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGSSLYQKSKEQWKDKLRKLKLITDPN 146 (681)
Q Consensus 67 ~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~L~~k~~~~w~~~l~~l~~~~~~~ 146 (681)
+...+++++++.+|..+|...+-.. .. .+..+++...+||.|.-+..++..+...... .+.+++.-.... .
T Consensus 192 Ig~~i~L~~Ft~~ev~~L~~~~~~~---~~---~~~~~~l~~~tgGhP~Lv~~~~~~l~~~~~~-~~~l~~~a~~~~--~ 262 (331)
T PF14516_consen 192 IGQPIELPDFTPEEVQELAQRYGLE---FS---QEQLEQLMDWTGGHPYLVQKACYLLVEEQIT-LEQLLEEAITDN--G 262 (331)
T ss_pred cccceeCCCCCHHHHHHHHHhhhcc---CC---HHHHHHHHHHHCCCHHHHHHHHHHHHHccCc-HHHHHHHHHHhc--c
Confidence 3458899999999999998877432 11 1227889999999999999999988763111 222222111000 0
Q ss_pred HHHHHHHHhcCCCHHHHHHHhhhcccCCCCCHHHHHHhhcCC---CchhhhHHHHhhccceeEeCCeEeeh
Q 005709 147 IYKVLKISYDGLNWEEKEIFLDVACFFKGEDVDFVTRVQDDP---TSMHNGLNTLVEMSLITISANRLQMH 214 (681)
Q Consensus 147 i~~~l~~sy~~L~~~~k~cfl~~a~Fp~~~~~~~~~~i~~~~---~~~~~~~~~L~~~sli~~~~~~~~mH 214 (681)
.| +.+++++...+.--| .-.+....|+.+- .........|...|||...++.+...
T Consensus 263 -------~~---~~hL~~l~~~L~~~~--~L~~~~~~il~~~~~~~~~~~~~~~L~~~GLV~~~~~~~~~~ 321 (331)
T PF14516_consen 263 -------IY---NDHLDRLLDRLQQNP--ELLEAYQQILFSGEPVDLDSDDIYKLESLGLVKRDGNQLEVR 321 (331)
T ss_pred -------cH---HHHHHHHHHHHccCH--HHHHHHHHHHhCCCCcccChHHHHHHHHCCeEEEeCCEEEEE
Confidence 11 123333333321111 0111222343322 22334577899999999988877665
No 88
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.67 E-value=0.025 Score=54.87 Aligned_cols=53 Identities=15% Similarity=0.039 Sum_probs=26.5
Q ss_pred cCccEEEecCCCCCCCCCCC-CCCCceEEEcCCCCcccccccccccccccccceecc
Q 005709 315 KKLRYLHWHEYPLKTLPFSF-EPNYLIELNLPYSKVEQIWIGEKKAFKLKFINLYNS 370 (681)
Q Consensus 315 ~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~~L~l 370 (681)
+.|..|+++.|.+.-+|.++ ++..++.+++..|+.++.|.+.+. ++.++++++
T Consensus 65 t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k---~~~~k~~e~ 118 (326)
T KOG0473|consen 65 TRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKK---EPHPKKNEQ 118 (326)
T ss_pred HHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccc---cCCcchhhh
Confidence 34455555555555555555 445555555555555555554444 444444443
No 89
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.35 E-value=0.4 Score=29.56 Aligned_cols=21 Identities=38% Similarity=0.749 Sum_probs=17.1
Q ss_pred CCCCcEEEcccCCCcccCccc
Q 005709 382 IPNLERINLSGSELERLPATI 402 (681)
Q Consensus 382 l~~L~~L~L~~n~l~~lp~~i 402 (681)
+++|++|+|++|.++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467889999988998888763
No 90
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.35 E-value=0.4 Score=29.56 Aligned_cols=21 Identities=38% Similarity=0.749 Sum_probs=17.1
Q ss_pred CCCCcEEEcccCCCcccCccc
Q 005709 382 IPNLERINLSGSELERLPATI 402 (681)
Q Consensus 382 l~~L~~L~L~~n~l~~lp~~i 402 (681)
+++|++|+|++|.++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467889999988998888763
No 91
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=87.14 E-value=4.3 Score=42.57 Aligned_cols=93 Identities=15% Similarity=0.232 Sum_probs=60.6
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCCchhh-hccC-CceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRDKRLL-DKRR-VENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~~~v~-~~~~-~~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
+++=++|+|+++.. +..|...+..-.+++.+|++|.+.+.+ ..+. -...++++++++++..+.+.+.. ...
T Consensus 92 ~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~-~~~-- 168 (313)
T PRK05564 92 GDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKY-NDI-- 168 (313)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHh-cCC--
Confidence 44456777776554 666666666666899999998766433 2221 13589999999999877665443 211
Q ss_pred ChhHHHHHHHHHHHcCCChhHHHHH
Q 005709 96 SPDLLELSEEVAHYANGNPLALQVL 120 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPLai~~~ 120 (681)
. .+.+..++.+++|.|..+...
T Consensus 169 ~---~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 169 K---EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred C---HHHHHHHHHHcCCCHHHHHHH
Confidence 1 223567889999988765433
No 92
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=86.51 E-value=2.8 Score=40.16 Aligned_cols=87 Identities=23% Similarity=0.302 Sum_probs=59.6
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCCc-hhhhccC-CceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRDK-RLLDKRR-VENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~~-~~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
+.+-+||+|+++.. .+.|...+..-.+.+.+|++|++. .+..... -...+++.+++.++..+.+.+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---i 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---I 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C---C
Confidence 45668999999765 555555555545677777777654 3333221 2358999999999998888776 1 1
Q ss_pred ChhHHHHHHHHHHHcCCChhH
Q 005709 96 SPDLLELSEEVAHYANGNPLA 116 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPLa 116 (681)
. .+.+..+++.++|.|..
T Consensus 170 ~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 S---EEAAELLLALAGGSPGA 187 (188)
T ss_pred C---HHHHHHHHHHcCCCccc
Confidence 1 35578899999998853
No 93
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.28 E-value=0.034 Score=53.94 Aligned_cols=78 Identities=17% Similarity=0.169 Sum_probs=52.6
Q ss_pred cCccEEEecCCCCCCCCCCC-CCCCceEEEcCCCCcccccccccccccccccceecc--cCCcccCC-CCCCCCCcEEEc
Q 005709 315 KKLRYLHWHEYPLKTLPFSF-EPNYLIELNLPYSKVEQIWIGEKKAFKLKFINLYNS--RYLTRLPE-FSEIPNLERINL 390 (681)
Q Consensus 315 ~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~~L~l--~~l~~lp~-~~~l~~L~~L~L 390 (681)
+..+.||++.|.+-.+-..| -++.|+.|+++.|.+..+|...+. +..++.+++ |+....|- ++..++++++++
T Consensus 42 kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q---~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQ---QRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHH---HHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 56777777777777666666 667777888888877777777766 666666665 55566663 666666666666
Q ss_pred ccCCC
Q 005709 391 SGSEL 395 (681)
Q Consensus 391 ~~n~l 395 (681)
..|.+
T Consensus 119 k~~~~ 123 (326)
T KOG0473|consen 119 KKTEF 123 (326)
T ss_pred ccCcc
Confidence 55543
No 94
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.11 E-value=0.48 Score=29.23 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=14.2
Q ss_pred CCCceEEEcCCCCcccccccc
Q 005709 336 PNYLIELNLPYSKVEQIWIGE 356 (681)
Q Consensus 336 l~~L~~L~L~~n~l~~lp~~~ 356 (681)
+++|++|+|++|+|+.+|.+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356777777777777776653
No 95
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.11 E-value=0.48 Score=29.23 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=14.2
Q ss_pred CCCceEEEcCCCCcccccccc
Q 005709 336 PNYLIELNLPYSKVEQIWIGE 356 (681)
Q Consensus 336 l~~L~~L~L~~n~l~~lp~~~ 356 (681)
+++|++|+|++|+|+.+|.+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356777777777777776653
No 96
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=85.83 E-value=3.3 Score=44.13 Aligned_cols=96 Identities=18% Similarity=0.167 Sum_probs=59.8
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEe-CCchhhhccCC-ceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITT-RDKRLLDKRRV-ENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTT-R~~~v~~~~~~-~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
+++-++|+|+++.. .+.|...+..-..+..+|++| +...++..... ...+++.+++.++..+.+.+...... .
T Consensus 140 g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~-~ 218 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG-S 218 (351)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC-C
Confidence 46668999999865 333333333323445544444 44345433321 24899999999999999987432211 1
Q ss_pred ChhHHHHHHHHHHHcCCChhHHHHHH
Q 005709 96 SPDLLELSEEVAHYANGNPLALQVLG 121 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPLai~~~g 121 (681)
-.+....+++.++|.|.....+.
T Consensus 219 ---~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 219 ---DGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred ---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 13346788999999998765443
No 97
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=85.79 E-value=2.7 Score=41.46 Aligned_cols=95 Identities=18% Similarity=0.164 Sum_probs=55.2
Q ss_pred EEEEEECcChh-----HH-HhhcCCCC-CCCCcEEEEEeCCch---------hhhccCCceEEEcCCCCHHHHHHHHHHH
Q 005709 25 VLIVLDDVDDN-----SK-NFAGGLEL-FSPGSRIIITTRDKR---------LLDKRRVENVYEVKGLKHNSALELFCRK 88 (681)
Q Consensus 25 ~LiVLDdv~~~-----~~-~l~~~~~~-~~~gSrIivTTR~~~---------v~~~~~~~~~~~l~~L~~~e~~~Lf~~~ 88 (681)
-+||+||++.. |. .+...+.. ...+.+||+||+... +.........++++++++++-..++...
T Consensus 92 ~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~ 171 (226)
T TIGR03420 92 DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSR 171 (226)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHH
Confidence 38999999754 22 22221111 123447899887432 2222223458999999999999998776
Q ss_pred hccCCCCChhHHHHHHHHHHHcCCChhHHHHHH
Q 005709 89 AFRQNNRSPDLLELSEEVAHYANGNPLALQVLG 121 (681)
Q Consensus 89 af~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g 121 (681)
+-+..-. --.+....+++.+.|.|..+..+-
T Consensus 172 ~~~~~~~--~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 172 AARRGLQ--LPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred HHHcCCC--CCHHHHHHHHHhccCCHHHHHHHH
Confidence 5322111 112444666677888877665543
No 98
>PRK09087 hypothetical protein; Validated
Probab=85.74 E-value=2.4 Score=42.18 Aligned_cols=90 Identities=11% Similarity=0.135 Sum_probs=57.0
Q ss_pred EEEEEECcChh------HHHhhcCCCCCCCCcEEEEEeC---------CchhhhccCCceEEEcCCCCHHHHHHHHHHHh
Q 005709 25 VLIVLDDVDDN------SKNFAGGLELFSPGSRIIITTR---------DKRLLDKRRVENVYEVKGLKHNSALELFCRKA 89 (681)
Q Consensus 25 ~LiVLDdv~~~------~~~l~~~~~~~~~gSrIivTTR---------~~~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~a 89 (681)
-+|++||+... +-.+..... ..|..||+|++ .+++...+....++++++++.++-.+++.+.+
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 37888999543 222222221 24667999887 34455555666799999999999999999887
Q ss_pred ccC-CCCChhHHHHHHHHHHHcCCChhHHHH
Q 005709 90 FRQ-NNRSPDLLELSEEVAHYANGNPLALQV 119 (681)
Q Consensus 90 f~~-~~~~~~~~~~~~~i~~~c~GlPLai~~ 119 (681)
-.. -..+ +++..-|++++.|-.-++..
T Consensus 167 ~~~~~~l~---~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 167 ADRQLYVD---PHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHcCCCCC---HHHHHHHHHHhhhhHHHHHH
Confidence 432 2222 34556666666665555543
No 99
>PF13173 AAA_14: AAA domain
Probab=85.60 E-value=1.3 Score=39.49 Aligned_cols=67 Identities=19% Similarity=0.129 Sum_probs=45.0
Q ss_pred HHHHHhCCCeEEEEEECcChh--HHHhhcCCCCCCCCcEEEEEeCCchhhhcc------CCceEEEcCCCCHHHH
Q 005709 15 NIKKRLQQRKVLIVLDDVDDN--SKNFAGGLELFSPGSRIIITTRDKRLLDKR------RVENVYEVKGLKHNSA 81 (681)
Q Consensus 15 ~i~~~L~~kr~LiVLDdv~~~--~~~l~~~~~~~~~gSrIivTTR~~~v~~~~------~~~~~~~l~~L~~~e~ 81 (681)
.+.+....++.+|+||+|... |......+-+.++..+||+|+.....+..- |-...+++.||+..|-
T Consensus 53 ~~~~~~~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 53 YFLELIKPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred HHHHhhccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 344444457889999999877 555444444445678999999988666331 1234789999987763
No 100
>PRK13342 recombination factor protein RarA; Reviewed
Probab=84.50 E-value=4.5 Score=44.22 Aligned_cols=99 Identities=19% Similarity=0.209 Sum_probs=61.1
Q ss_pred CCCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEE--EeCCch--hhhcc-CCceEEEcCCCCHHHHHHHHHHHhcc
Q 005709 21 QQRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIII--TTRDKR--LLDKR-RVENVYEVKGLKHNSALELFCRKAFR 91 (681)
Q Consensus 21 ~~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIiv--TTR~~~--v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~af~ 91 (681)
.+++.+|++|+++.. .+.|...+. .|..++| ||.+.. +.... .-...+++++++.++..+++.+.+-.
T Consensus 90 ~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 90 AGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred cCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHH
Confidence 457889999999876 445555443 3555555 344332 21111 11258999999999999999886532
Q ss_pred CCCCC-hhHHHHHHHHHHHcCCChhHHHHHHh
Q 005709 92 QNNRS-PDLLELSEEVAHYANGNPLALQVLGS 122 (681)
Q Consensus 92 ~~~~~-~~~~~~~~~i~~~c~GlPLai~~~g~ 122 (681)
..... .--.+....+++.|+|.|..+..+..
T Consensus 167 ~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 167 KERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred hhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 11100 11245567888999999877655443
No 101
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=83.41 E-value=0.93 Score=26.16 Aligned_cols=20 Identities=60% Similarity=1.162 Sum_probs=17.4
Q ss_pred CceEEEcCCCCccccccccc
Q 005709 338 YLIELNLPYSKVEQIWIGEK 357 (681)
Q Consensus 338 ~L~~L~L~~n~l~~lp~~~~ 357 (681)
+|.+|++.+++++.+|.+.+
T Consensus 1 ~LVeL~m~~S~lekLW~G~k 20 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGVK 20 (20)
T ss_pred CcEEEECCCCChHHhcCccC
Confidence 58999999999999998753
No 102
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=81.81 E-value=0.91 Score=28.10 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=10.6
Q ss_pred cCccEEEecCCCCCCCCC
Q 005709 315 KKLRYLHWHEYPLKTLPF 332 (681)
Q Consensus 315 ~~L~~L~l~~~~l~~lp~ 332 (681)
++|++|+.++|.++++|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 455666666666666554
No 103
>PRK08727 hypothetical protein; Validated
Probab=81.52 E-value=4.8 Score=40.18 Aligned_cols=89 Identities=11% Similarity=0.055 Sum_probs=53.7
Q ss_pred EEEEEECcChh-----HH-HhhcCCCC-CCCCcEEEEEeCCc---------hhhhccCCceEEEcCCCCHHHHHHHHHHH
Q 005709 25 VLIVLDDVDDN-----SK-NFAGGLEL-FSPGSRIIITTRDK---------RLLDKRRVENVYEVKGLKHNSALELFCRK 88 (681)
Q Consensus 25 ~LiVLDdv~~~-----~~-~l~~~~~~-~~~gSrIivTTR~~---------~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~ 88 (681)
-+|||||+... |+ .+..-+.. ...|..||+||+.. ++.........+++++++.++-.+++.+.
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 58999998743 32 12211111 12466799999843 23333334558999999999999999987
Q ss_pred hccCC-CCChhHHHHHHHHHHHcCCChhH
Q 005709 89 AFRQN-NRSPDLLELSEEVAHYANGNPLA 116 (681)
Q Consensus 89 af~~~-~~~~~~~~~~~~i~~~c~GlPLa 116 (681)
+.... ... ++...-+++++.|-.-+
T Consensus 175 a~~~~l~l~---~e~~~~La~~~~rd~r~ 200 (233)
T PRK08727 175 AQRRGLALD---EAAIDWLLTHGERELAG 200 (233)
T ss_pred HHHcCCCCC---HHHHHHHHHhCCCCHHH
Confidence 75432 222 34455666667654433
No 104
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=80.83 E-value=4.5 Score=42.68 Aligned_cols=92 Identities=17% Similarity=0.213 Sum_probs=57.4
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCCc-hhhhccCC-ceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRDK-RLLDKRRV-ENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~~~-~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
+.|+ +|+|+++.. ...|...+..-..++.+|.||.+. .++..+.. ...+.+.+++.+++.+.+.... .. ..
T Consensus 106 ~~kv-~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~-~~ 182 (328)
T PRK05707 106 GRKV-VLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PE-SD 182 (328)
T ss_pred CCeE-EEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-cc-CC
Confidence 3444 567999865 333333333324677788888776 45444322 3479999999999998887653 11 11
Q ss_pred ChhHHHHHHHHHHHcCCChhHHHHH
Q 005709 96 SPDLLELSEEVAHYANGNPLALQVL 120 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPLai~~~ 120 (681)
.+-+..++..++|-|+....+
T Consensus 183 ----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 183 ----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ----hHHHHHHHHHcCCCHHHHHHH
Confidence 223456788999999865544
No 105
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.58 E-value=16 Score=41.05 Aligned_cols=94 Identities=14% Similarity=0.092 Sum_probs=61.5
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCC-chhhhccC-CceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRD-KRLLDKRR-VENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~-~~v~~~~~-~~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
+++-++|+|+++.. ++.|...+........+|++|.. +.+...+. -...+++.+++.++..+.+.+.+-+....
T Consensus 115 ~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~ 194 (504)
T PRK14963 115 GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE 194 (504)
T ss_pred CCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 45668999999865 56666555544455566655543 34433332 23589999999999999998877543321
Q ss_pred ChhHHHHHHHHHHHcCCChhHH
Q 005709 96 SPDLLELSEEVAHYANGNPLAL 117 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPLai 117 (681)
. -.+....|++.++|.+--+
T Consensus 195 i--~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 195 A--EPEALQLVARLADGAMRDA 214 (504)
T ss_pred C--CHHHHHHHHHHcCCCHHHH
Confidence 1 1345678889999987544
No 106
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=79.84 E-value=39 Score=39.53 Aligned_cols=96 Identities=17% Similarity=0.088 Sum_probs=61.3
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCCc-hhhhccCC-ceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRDK-RLLDKRRV-ENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~~~-~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
++.-++|||+++.. +..|...+..-....++|+||.+. .+...+.. ...+.++.++.++..+.+.+.+-...-.
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~ 197 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA 197 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 34457889999876 555555554445677888888776 33333211 3489999999999999888766432211
Q ss_pred ChhHHHHHHHHHHHcCCCh-hHHHH
Q 005709 96 SPDLLELSEEVAHYANGNP-LALQV 119 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlP-Lai~~ 119 (681)
--.+..+.|++.++|-. -|+..
T Consensus 198 --id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 198 --FEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred --CCHHHHHHHHHHcCCCHHHHHHH
Confidence 11345567888888854 44443
No 107
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.37 E-value=16 Score=39.11 Aligned_cols=97 Identities=13% Similarity=0.061 Sum_probs=61.9
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCCc-hhhhccC-CceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRDK-RLLDKRR-VENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~~-~~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
+++-++|+|+++.. ++.+...+.......++|++|.+. .+.+... -...+++++++.++..+.+...+-+....
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~ 197 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESID 197 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 34568999999765 555655555545667777777544 3433321 13589999999999988887766432211
Q ss_pred ChhHHHHHHHHHHHcCCChhHHHHH
Q 005709 96 SPDLLELSEEVAHYANGNPLALQVL 120 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPLai~~~ 120 (681)
- -.+.+..|++.++|.|-.+...
T Consensus 198 i--~~~al~~ia~~s~G~~R~al~~ 220 (363)
T PRK14961 198 T--DEYALKLIAYHAHGSMRDALNL 220 (363)
T ss_pred C--CHHHHHHHHHHcCCCHHHHHHH
Confidence 1 1345567888899987644333
No 108
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=79.00 E-value=8.8 Score=42.96 Aligned_cols=94 Identities=16% Similarity=0.170 Sum_probs=61.5
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEE-EeCCchhhhccC-CceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIII-TTRDKRLLDKRR-VENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIiv-TTR~~~v~~~~~-~~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
+++-++|+|+++.. ++.|...+....+..++|. ||+.+.+..... -...+++++++.++..+.+.+.+-+....
T Consensus 127 ~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ 206 (507)
T PRK06645 127 GKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLK 206 (507)
T ss_pred CCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 56678999999875 6666655554455666654 555555554432 23479999999999999998887543321
Q ss_pred ChhHHHHHHHHHHHcCCChhHH
Q 005709 96 SPDLLELSEEVAHYANGNPLAL 117 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPLai 117 (681)
. -.+....|++.++|-+--+
T Consensus 207 i--e~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 207 T--DIEALRIIAYKSEGSARDA 226 (507)
T ss_pred C--CHHHHHHHHHHcCCCHHHH
Confidence 1 1234566888888876443
No 109
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=78.36 E-value=13 Score=39.08 Aligned_cols=106 Identities=18% Similarity=0.203 Sum_probs=64.7
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCCc-hhhhccCC-ceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRDK-RLLDKRRV-ENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~~~-~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
+++=.+|+|+++.. ...|...+..-.+++.+|.+|.+. .++..+.+ ...+.+.+++.+++.+.+.... ..
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~----~~ 182 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG----IT 182 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC----Cc
Confidence 34447888998765 333333333334667777776655 56655532 3488999999999988776431 11
Q ss_pred ChhHHHHHHHHHHHcCCChhHHHHHHhhhcCCCHHHHHHHHHHhh
Q 005709 96 SPDLLELSEEVAHYANGNPLALQVLGSSLYQKSKEQWKDKLRKLK 140 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPLai~~~g~~L~~k~~~~w~~~l~~l~ 140 (681)
.+..++..++|-|+.+..+. .....++.+.++..+.
T Consensus 183 ------~~~~~l~l~~G~p~~A~~~~---~~~~~~~~~~~~~~l~ 218 (319)
T PRK06090 183 ------VPAYALKLNMGSPLKTLAMM---KEGGLEKYHKLERQLV 218 (319)
T ss_pred ------hHHHHHHHcCCCHHHHHHHh---CCCcHHHHHHHHHHHH
Confidence 13467889999999765543 3333444444444433
No 110
>PRK05642 DNA replication initiation factor; Validated
Probab=78.12 E-value=7.1 Score=38.98 Aligned_cols=90 Identities=19% Similarity=0.251 Sum_probs=52.9
Q ss_pred EEEEECcChh-----HHH-hhcCCCC-CCCCcEEEEEeCCc---------hhhhccCCceEEEcCCCCHHHHHHHHHHHh
Q 005709 26 LIVLDDVDDN-----SKN-FAGGLEL-FSPGSRIIITTRDK---------RLLDKRRVENVYEVKGLKHNSALELFCRKA 89 (681)
Q Consensus 26 LiVLDdv~~~-----~~~-l~~~~~~-~~~gSrIivTTR~~---------~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~a 89 (681)
++|+||+... |+. |..-+.. ...|.+||+||+.. ++...++...++++++++.++-.+++..++
T Consensus 100 ~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 100 LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 5788999632 432 2222211 13467788888743 112222345689999999999999999776
Q ss_pred ccCCCCChhHHHHHHHHHHHcCCChhHH
Q 005709 90 FRQNNRSPDLLELSEEVAHYANGNPLAL 117 (681)
Q Consensus 90 f~~~~~~~~~~~~~~~i~~~c~GlPLai 117 (681)
....-.-+ +++..-+++++.|-.-++
T Consensus 180 ~~~~~~l~--~ev~~~L~~~~~~d~r~l 205 (234)
T PRK05642 180 SRRGLHLT--DEVGHFILTRGTRSMSAL 205 (234)
T ss_pred HHcCCCCC--HHHHHHHHHhcCCCHHHH
Confidence 44321111 355566666666654443
No 111
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=77.83 E-value=7 Score=38.61 Aligned_cols=77 Identities=19% Similarity=0.301 Sum_probs=44.5
Q ss_pred HHHHHHhCCCeEEEEEECcChh-----HHH-hhcCCC-CCCCCcEEEEEeCCc-hhh--------hccCCceEEEcCCCC
Q 005709 14 PNIKKRLQQRKVLIVLDDVDDN-----SKN-FAGGLE-LFSPGSRIIITTRDK-RLL--------DKRRVENVYEVKGLK 77 (681)
Q Consensus 14 ~~i~~~L~~kr~LiVLDdv~~~-----~~~-l~~~~~-~~~~gSrIivTTR~~-~v~--------~~~~~~~~~~l~~L~ 77 (681)
+.+++.+++-. +|++||++.. |+. +..-+. ....|-+||+|++.. .-+ .......++++++++
T Consensus 89 ~~~~~~~~~~D-lL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd 167 (219)
T PF00308_consen 89 EEFKDRLRSAD-LLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPD 167 (219)
T ss_dssp HHHHHHHCTSS-EEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----
T ss_pred hhhhhhhhcCC-EEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCC
Confidence 44556666444 6789999764 322 111111 113566899999543 222 223345699999999
Q ss_pred HHHHHHHHHHHhcc
Q 005709 78 HNSALELFCRKAFR 91 (681)
Q Consensus 78 ~~e~~~Lf~~~af~ 91 (681)
.++-.+++.+.|-.
T Consensus 168 ~~~r~~il~~~a~~ 181 (219)
T PF00308_consen 168 DEDRRRILQKKAKE 181 (219)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998853
No 112
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=76.85 E-value=16 Score=40.50 Aligned_cols=101 Identities=14% Similarity=0.174 Sum_probs=62.3
Q ss_pred eEEEEEECcChh------HHHhhcCCCC-CCCCcEEEEEeCCc---------hhhhccCCceEEEcCCCCHHHHHHHHHH
Q 005709 24 KVLIVLDDVDDN------SKNFAGGLEL-FSPGSRIIITTRDK---------RLLDKRRVENVYEVKGLKHNSALELFCR 87 (681)
Q Consensus 24 r~LiVLDdv~~~------~~~l~~~~~~-~~~gSrIivTTR~~---------~v~~~~~~~~~~~l~~L~~~e~~~Lf~~ 87 (681)
.-+||+||+... .+.+..-+.. ...|..||+|+... ++...+....++.+++++.++-.+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 347889999543 2222221111 12455688886532 3333344566889999999999999999
Q ss_pred HhccCCCCChhHHHHHHHHHHHcCCChhHHHHHHhhh
Q 005709 88 KAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGSSL 124 (681)
Q Consensus 88 ~af~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~L 124 (681)
++-.......--+++..-|++.++|.|-.+..+-..+
T Consensus 287 ~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 287 EIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 8743221001124667888899999888776655433
No 113
>PRK08084 DNA replication initiation factor; Provisional
Probab=76.40 E-value=12 Score=37.25 Aligned_cols=89 Identities=13% Similarity=0.195 Sum_probs=53.2
Q ss_pred EEEEECcChh-----HHH-hhcCCCC-CCCC-cEEEEEeCCc---------hhhhccCCceEEEcCCCCHHHHHHHHHHH
Q 005709 26 LIVLDDVDDN-----SKN-FAGGLEL-FSPG-SRIIITTRDK---------RLLDKRRVENVYEVKGLKHNSALELFCRK 88 (681)
Q Consensus 26 LiVLDdv~~~-----~~~-l~~~~~~-~~~g-SrIivTTR~~---------~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~ 88 (681)
+|++||+... |+. +...+.. ...| .+||+||+.. ++...+....++++++++.++-.+++.++
T Consensus 100 lliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~ 179 (235)
T PRK08084 100 LVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLR 179 (235)
T ss_pred EEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHH
Confidence 7889999653 432 1111110 0133 3689998744 34444556679999999999999998876
Q ss_pred hccCC-CCChhHHHHHHHHHHHcCCChhHH
Q 005709 89 AFRQN-NRSPDLLELSEEVAHYANGNPLAL 117 (681)
Q Consensus 89 af~~~-~~~~~~~~~~~~i~~~c~GlPLai 117 (681)
|-... ..+ +++..-+++++.|-.-++
T Consensus 180 a~~~~~~l~---~~v~~~L~~~~~~d~r~l 206 (235)
T PRK08084 180 ARLRGFELP---EDVGRFLLKRLDREMRTL 206 (235)
T ss_pred HHHcCCCCC---HHHHHHHHHhhcCCHHHH
Confidence 64322 222 345566666666544433
No 114
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=75.99 E-value=13 Score=42.90 Aligned_cols=109 Identities=19% Similarity=0.178 Sum_probs=67.3
Q ss_pred chHHHHHHhCCCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEE--EeCCchhh-hccC-CceEEEcCCCCHHHHHH
Q 005709 12 ITPNIKKRLQQRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIII--TTRDKRLL-DKRR-VENVYEVKGLKHNSALE 83 (681)
Q Consensus 12 ~~~~i~~~L~~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIiv--TTR~~~v~-~~~~-~~~~~~l~~L~~~e~~~ 83 (681)
.+..+.+.++.+++.++.|+.|.. |+.+...++...+...|+| ||++.... .... -...+.+.+++.+|.++
T Consensus 281 ~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~ 360 (615)
T TIGR02903 281 LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIAL 360 (615)
T ss_pred HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHH
Confidence 577788888899999998776643 7766665555555555665 67755322 1111 11367889999999999
Q ss_pred HHHHHhccCC-CCChhHHHHHHHHHHHcCCChhHHHHHHhh
Q 005709 84 LFCRKAFRQN-NRSPDLLELSEEVAHYANGNPLALQVLGSS 123 (681)
Q Consensus 84 Lf~~~af~~~-~~~~~~~~~~~~i~~~c~GlPLai~~~g~~ 123 (681)
++.+.+-+.. ... .++...|.+++..-+-|+..++..
T Consensus 361 Il~~~a~~~~v~ls---~eal~~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 361 IVLNAAEKINVHLA---AGVEELIARYTIEGRKAVNILADV 398 (615)
T ss_pred HHHHHHHHcCCCCC---HHHHHHHHHCCCcHHHHHHHHHHH
Confidence 9998764321 111 234445555554445565555443
No 115
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=75.07 E-value=17 Score=38.56 Aligned_cols=98 Identities=14% Similarity=0.079 Sum_probs=61.8
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCCch-hhhcc-CCceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRDKR-LLDKR-RVENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~~~-v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
+++-++|+|+++.. ...+...+........+|++|.+.+ +...+ .-...++++++++++..+.+...+-+....
T Consensus 116 ~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~ 195 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK 195 (355)
T ss_pred CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 44558899998654 4445444444446677777775543 33322 123478999999999888888776433221
Q ss_pred ChhHHHHHHHHHHHcCCChhHHHHHH
Q 005709 96 SPDLLELSEEVAHYANGNPLALQVLG 121 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPLai~~~g 121 (681)
-+ .+.+..+++.++|.|..+....
T Consensus 196 i~--~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 196 IE--DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred CC--HHHHHHHHHHcCCChHHHHHHH
Confidence 11 3566778889999887665443
No 116
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=73.39 E-value=17 Score=38.31 Aligned_cols=94 Identities=19% Similarity=0.147 Sum_probs=56.4
Q ss_pred CeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCCc-hhhhccC-CceEEEcCCCCHHHHHHHHHHHhccCCCCC
Q 005709 23 RKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRDK-RLLDKRR-VENVYEVKGLKHNSALELFCRKAFRQNNRS 96 (681)
Q Consensus 23 kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~~-~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~ 96 (681)
.+-+||+||++.. .+.|...+.......++|+||... .+..... -...+++.+++.++..+.+...+-+....
T Consensus 125 ~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~- 203 (337)
T PRK12402 125 DYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD- 203 (337)
T ss_pred CCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC-
Confidence 3458999999654 333333333334567788877543 3333221 23478899999999988888865432211
Q ss_pred hhHHHHHHHHHHHcCCChhHHH
Q 005709 97 PDLLELSEEVAHYANGNPLALQ 118 (681)
Q Consensus 97 ~~~~~~~~~i~~~c~GlPLai~ 118 (681)
--.+....++++++|.+-.+.
T Consensus 204 -~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 204 -YDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred -CCHHHHHHHHHHcCCCHHHHH
Confidence 113456777888888655443
No 117
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.29 E-value=1.4 Score=42.32 Aligned_cols=63 Identities=16% Similarity=0.108 Sum_probs=31.5
Q ss_pred cEEEEEeecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCC
Q 005709 257 AIEGIFFDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYP 326 (681)
Q Consensus 257 ~v~~l~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~ 326 (681)
++.--.+|-++.......-+.+.+++.++.|.+.+ |+.+ +.++. +.+..+.++|+.|++++|+
T Consensus 100 ~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~--ck~~-dD~~L----~~l~~~~~~L~~L~lsgC~ 162 (221)
T KOG3864|consen 100 NVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLAN--CKYF-DDWCL----ERLGGLAPSLQDLDLSGCP 162 (221)
T ss_pred cceEEEEecCCchHHHHHHHHHhccchhhhheecc--ccch-hhHHH----HHhcccccchheeeccCCC
Confidence 33333445555544444555666777777777663 3221 00111 1222244667777777664
No 118
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=73.20 E-value=24 Score=36.97 Aligned_cols=94 Identities=15% Similarity=0.094 Sum_probs=57.4
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEe-CCchhhhccCC-ceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITT-RDKRLLDKRRV-ENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTT-R~~~v~~~~~~-~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
+++=++|+|+++.. ...|...+..-. .+.+|.+| +...++..+.. ...++++++++++..+.+.........
T Consensus 123 ~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~- 200 (314)
T PRK07399 123 APRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL- 200 (314)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc-
Confidence 56668899998765 333333333223 33455555 44455554422 348999999999999999876422111
Q ss_pred ChhHHHHHHHHHHHcCCChhHHHHHH
Q 005709 96 SPDLLELSEEVAHYANGNPLALQVLG 121 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPLai~~~g 121 (681)
......++..++|-|..+....
T Consensus 201 ----~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 201 ----NINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred ----hhHHHHHHHHcCCCHHHHHHHH
Confidence 1113578899999997665433
No 119
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=72.68 E-value=16 Score=39.59 Aligned_cols=92 Identities=15% Similarity=0.159 Sum_probs=58.8
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCCc-hhhhccC-CceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRDK-RLLDKRR-VENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~~-~~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
+++-++|+|+++.. ...|...+....++..+|++|.+. .+...+. -...+.+++++.++..+.+..... .
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~---~- 191 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG---V- 191 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC---C-
Confidence 34447888999876 333444444334667677776664 4444432 135899999999999888874421 1
Q ss_pred ChhHHHHHHHHHHHcCCChhHHHHH
Q 005709 96 SPDLLELSEEVAHYANGNPLALQVL 120 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPLai~~~ 120 (681)
. .+.+..++..++|-|.....+
T Consensus 192 ~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 192 D---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred C---HHHHHHHHHHcCCCHHHHHHH
Confidence 1 244677899999999765443
No 120
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=72.58 E-value=2.4 Score=26.27 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=15.7
Q ss_pred CCceEEEcCCCCcccccc
Q 005709 337 NYLIELNLPYSKVEQIWI 354 (681)
Q Consensus 337 ~~L~~L~L~~n~l~~lp~ 354 (681)
.+|+.|++++|+++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 578999999999998886
No 121
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=72.01 E-value=14 Score=39.65 Aligned_cols=88 Identities=20% Similarity=0.305 Sum_probs=54.7
Q ss_pred CeEEEEEECcChh------------------HHHhhcCCCCC--CCCcEEEEEeCCchhh-----hccCCceEEEcCCCC
Q 005709 23 RKVLIVLDDVDDN------------------SKNFAGGLELF--SPGSRIIITTRDKRLL-----DKRRVENVYEVKGLK 77 (681)
Q Consensus 23 kr~LiVLDdv~~~------------------~~~l~~~~~~~--~~gSrIivTTR~~~v~-----~~~~~~~~~~l~~L~ 77 (681)
...+|+|||++.. +..+...++.. ..+.+||.||...+.+ .....+..++++.++
T Consensus 215 ~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~ 294 (364)
T TIGR01242 215 APSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPD 294 (364)
T ss_pred CCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcC
Confidence 4579999998642 22232222211 2467788888854333 222346689999999
Q ss_pred HHHHHHHHHHHhccCCCCC-hhHHHHHHHHHHHcCCCh
Q 005709 78 HNSALELFCRKAFRQNNRS-PDLLELSEEVAHYANGNP 114 (681)
Q Consensus 78 ~~e~~~Lf~~~af~~~~~~-~~~~~~~~~i~~~c~GlP 114 (681)
.++..++|..++.+..... .++ ..+++.+.|..
T Consensus 295 ~~~r~~Il~~~~~~~~l~~~~~~----~~la~~t~g~s 328 (364)
T TIGR01242 295 FEGRLEILKIHTRKMKLAEDVDL----EAIAKMTEGAS 328 (364)
T ss_pred HHHHHHHHHHHHhcCCCCccCCH----HHHHHHcCCCC
Confidence 9999999999886543222 233 45556676654
No 122
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.54 E-value=1.1 Score=42.89 Aligned_cols=78 Identities=17% Similarity=0.167 Sum_probs=48.9
Q ss_pred CCCceEEEcCCCCcccccccccccccccccceecccCCcccCC-----C-CCCCCCcEEEcc-cCCCccc-CccccCCCc
Q 005709 336 PNYLIELNLPYSKVEQIWIGEKKAFKLKFINLYNSRYLTRLPE-----F-SEIPNLERINLS-GSELERL-PATIKQFSQ 407 (681)
Q Consensus 336 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~~L~l~~l~~lp~-----~-~~l~~L~~L~L~-~n~l~~l-p~~i~~L~~ 407 (681)
-..++.++-+++.|... ++.++..++.++.|.+.+...+-+ + +-.++|+.|+|+ |..|++- -..+..+++
T Consensus 100 ~~~IeaVDAsds~I~~e--Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lkn 177 (221)
T KOG3864|consen 100 NVKIEAVDASDSSIMYE--GLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKN 177 (221)
T ss_pred cceEEEEecCCchHHHH--HHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhh
Confidence 34577777777776532 444433356666666544444432 2 245789999999 8888753 234777788
Q ss_pred cceecccc
Q 005709 408 LRYLYLRN 415 (681)
Q Consensus 408 L~~L~L~~ 415 (681)
|+.|.+.+
T Consensus 178 Lr~L~l~~ 185 (221)
T KOG3864|consen 178 LRRLHLYD 185 (221)
T ss_pred hHHHHhcC
Confidence 88887776
No 123
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=70.94 E-value=49 Score=34.35 Aligned_cols=93 Identities=17% Similarity=0.220 Sum_probs=56.9
Q ss_pred CeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCCc-hhhhcc-CCceEEEcCCCCHHHHHHHHHHHhccCCCCC
Q 005709 23 RKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRDK-RLLDKR-RVENVYEVKGLKHNSALELFCRKAFRQNNRS 96 (681)
Q Consensus 23 kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~ 96 (681)
.+-+|++|+++.. .+.|...+......+++|+++... .+.+.. .-...+++++++.++....+...+-+....-
T Consensus 102 ~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i 181 (319)
T PRK00440 102 PFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEI 181 (319)
T ss_pred CceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCC
Confidence 3568999998654 334444344444567777777432 222211 1123689999999999888888775433211
Q ss_pred hhHHHHHHHHHHHcCCChhHH
Q 005709 97 PDLLELSEEVAHYANGNPLAL 117 (681)
Q Consensus 97 ~~~~~~~~~i~~~c~GlPLai 117 (681)
-.+....+++.++|.+--+
T Consensus 182 --~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 182 --TDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred --CHHHHHHHHHHcCCCHHHH
Confidence 1345667788898876553
No 124
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=70.27 E-value=19 Score=37.85 Aligned_cols=89 Identities=11% Similarity=0.131 Sum_probs=57.4
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCCc-hhhhccCC-ceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRDK-RLLDKRRV-ENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~~~-~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
+++=.+|+|+++.. -..|...+..-.++..+|.+|... .++..+.+ ...+.+.+++.++..+.+...... .
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~~---~ 182 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSSA---E 182 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhcc---C
Confidence 55557889999865 333333333334677777777665 56655432 348999999999998888765411 1
Q ss_pred ChhHHHHHHHHHHHcCCChhHH
Q 005709 96 SPDLLELSEEVAHYANGNPLAL 117 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPLai 117 (681)
...+...+..++|-|+.+
T Consensus 183 ----~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 183 ----ISEILTALRINYGRPLLA 200 (325)
T ss_pred ----hHHHHHHHHHcCCCHHHH
Confidence 112456678899999644
No 125
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=69.62 E-value=1 Score=50.06 Aligned_cols=61 Identities=28% Similarity=0.417 Sum_probs=34.9
Q ss_pred CCCCCCCcEEEccc--CCCcccC----ccccCCCccceeccccccccCcCC-----CCCCCCCEEeccCCCC
Q 005709 379 FSEIPNLERINLSG--SELERLP----ATIKQFSQLRYLYLRNCNMLQSLP-----ELPLLLSHLDASNCKR 439 (681)
Q Consensus 379 ~~~l~~L~~L~L~~--n~l~~lp----~~i~~L~~L~~L~L~~c~~l~~lp-----~~l~~L~~L~l~~c~~ 439 (681)
....++|+.|+++. ......+ .....+++|+.|+++.|..+...- ...++|+.|.+.+|..
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~ 281 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSN 281 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCc
Confidence 55677888888873 2222211 234455777888887766533211 1145677777666654
No 126
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=69.39 E-value=15 Score=39.24 Aligned_cols=95 Identities=20% Similarity=0.276 Sum_probs=59.6
Q ss_pred HHhCCCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEE--EeCCchhh--hcc-CCceEEEcCCCCHHHHHHHHHHH
Q 005709 18 KRLQQRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIII--TTRDKRLL--DKR-RVENVYEVKGLKHNSALELFCRK 88 (681)
Q Consensus 18 ~~L~~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIiv--TTR~~~v~--~~~-~~~~~~~l~~L~~~e~~~Lf~~~ 88 (681)
.+..++|.+|.+|.|..- =+.|.+.. ..|.-|+| ||.++.-. ... .-..++++++|+.+|-.+++.+.
T Consensus 99 ~~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra 175 (436)
T COG2256 99 NRLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRA 175 (436)
T ss_pred HHhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHH
Confidence 445689999999999755 44555544 47877776 77776322 111 12359999999999999999984
Q ss_pred hccCCCCCh----h-HHHHHHHHHHHcCCChh
Q 005709 89 AFRQNNRSP----D-LLELSEEVAHYANGNPL 115 (681)
Q Consensus 89 af~~~~~~~----~-~~~~~~~i~~~c~GlPL 115 (681)
+-.....-+ . -++.-.-++..++|---
T Consensus 176 ~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 176 LLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred HhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 422111111 1 12344567777777543
No 127
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=68.55 E-value=21 Score=37.45 Aligned_cols=92 Identities=20% Similarity=0.155 Sum_probs=58.1
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCCc-hhhhccCC-ceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRDK-RLLDKRRV-ENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~~~-~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
+++=++|+|+++.. -..|...+..-.+++.+|++|... .++..+.. ...+.+.+++.+++.+.+.... ..
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~~ 187 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----VS 187 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC----CC
Confidence 45568899999876 222222222224677777777654 55554432 3478899999999988776431 11
Q ss_pred ChhHHHHHHHHHHHcCCChhHHHHHH
Q 005709 96 SPDLLELSEEVAHYANGNPLALQVLG 121 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPLai~~~g 121 (681)
...+..++..++|-|+.+..+.
T Consensus 188 ----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 188 ----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred ----hHHHHHHHHHcCCCHHHHHHHh
Confidence 1225677899999998765443
No 128
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=68.10 E-value=46 Score=35.30 Aligned_cols=90 Identities=18% Similarity=0.213 Sum_probs=56.9
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCC-chhhhccCC-ceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRD-KRLLDKRRV-ENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~-~~v~~~~~~-~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
+++=++|+|+++.. ...|...+..-.++..+|.+|.+ ..++..+.. ...+.+.+++.++..+.+.... .+
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~~ 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----VA 206 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----CC
Confidence 44457888999865 44444444444577766666655 456554422 3489999999999998887642 11
Q ss_pred ChhHHHHHHHHHHHcCCChhHHHHHH
Q 005709 96 SPDLLELSEEVAHYANGNPLALQVLG 121 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPLai~~~g 121 (681)
+ ....+..++|-|..+..+.
T Consensus 207 -~-----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 207 -D-----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred -h-----HHHHHHHcCCCHHHHHHHH
Confidence 1 1235778899997655443
No 129
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=67.69 E-value=44 Score=38.66 Aligned_cols=98 Identities=14% Similarity=0.048 Sum_probs=60.1
Q ss_pred CCCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCC-chhhhccC-CceEEEcCCCCHHHHHHHHHHHhccCCC
Q 005709 21 QQRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRD-KRLLDKRR-VENVYEVKGLKHNSALELFCRKAFRQNN 94 (681)
Q Consensus 21 ~~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~-~~v~~~~~-~~~~~~l~~L~~~e~~~Lf~~~af~~~~ 94 (681)
.+++-++|+|+++.. ...|...+..-....++|.+|.+ ..+...+. -...|++++++.++..+.+.+.+-...-
T Consensus 117 ~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i 196 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI 196 (647)
T ss_pred cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 456678999999865 44444444333345555555544 45543332 1358999999999999888876532221
Q ss_pred CChhHHHHHHHHHHHcCCChhHHHHH
Q 005709 95 RSPDLLELSEEVAHYANGNPLALQVL 120 (681)
Q Consensus 95 ~~~~~~~~~~~i~~~c~GlPLai~~~ 120 (681)
.. -......|++.++|.+-.+..+
T Consensus 197 ~~--e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 197 PF--EPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred CC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 11 1334567888999977644444
No 130
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.44 E-value=30 Score=39.62 Aligned_cols=102 Identities=13% Similarity=0.098 Sum_probs=63.4
Q ss_pred CCCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCC-chhhhccC-CceEEEcCCCCHHHHHHHHHHHhccCCC
Q 005709 21 QQRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRD-KRLLDKRR-VENVYEVKGLKHNSALELFCRKAFRQNN 94 (681)
Q Consensus 21 ~~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~-~~v~~~~~-~~~~~~l~~L~~~e~~~Lf~~~af~~~~ 94 (681)
.+++-+||+|+++.. ...|...+..-.....+|++|.+ ..+...+. -...+++++++.++..+.+...+.+...
T Consensus 117 ~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi 196 (624)
T PRK14959 117 EGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV 196 (624)
T ss_pred cCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC
Confidence 356678999999765 45555554433345556665554 44443321 1237899999999999888876654322
Q ss_pred CChhHHHHHHHHHHHcCCC-hhHHHHHHhhh
Q 005709 95 RSPDLLELSEEVAHYANGN-PLALQVLGSSL 124 (681)
Q Consensus 95 ~~~~~~~~~~~i~~~c~Gl-PLai~~~g~~L 124 (681)
.- -.+.+..|++.++|- --|+..+...+
T Consensus 197 ~i--d~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 197 DY--DPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred CC--CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 11 134567788888885 46666665433
No 131
>PRK06620 hypothetical protein; Validated
Probab=66.66 E-value=31 Score=33.93 Aligned_cols=85 Identities=8% Similarity=0.032 Sum_probs=50.0
Q ss_pred eEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCCc-------hhhhccCCceEEEcCCCCHHHHHHHHHHHhccC
Q 005709 24 KVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRDK-------RLLDKRRVENVYEVKGLKHNSALELFCRKAFRQ 92 (681)
Q Consensus 24 r~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~~-------~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~af~~ 92 (681)
.-++++|||... +-.+..... ..|..||+|++.. ++...+....++++++++.++-.+++.+.+-..
T Consensus 86 ~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 86 YNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 347888999643 212211111 3566899998744 223333455689999999999888887776421
Q ss_pred -CCCChhHHHHHHHHHHHcCCC
Q 005709 93 -NNRSPDLLELSEEVAHYANGN 113 (681)
Q Consensus 93 -~~~~~~~~~~~~~i~~~c~Gl 113 (681)
-..+ +++..-+++++.|-
T Consensus 164 ~l~l~---~ev~~~L~~~~~~d 182 (214)
T PRK06620 164 SVTIS---RQIIDFLLVNLPRE 182 (214)
T ss_pred CCCCC---HHHHHHHHHHccCC
Confidence 1222 34455556655543
No 132
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.29 E-value=16 Score=41.86 Aligned_cols=97 Identities=12% Similarity=0.030 Sum_probs=61.6
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEe-CCchhhhccCC-ceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITT-RDKRLLDKRRV-ENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTT-R~~~v~~~~~~-~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
++.-++|+|+++.. ...|...+..-..+.++|.+| ....+...+.. ...+.++.++.++..+.+.+.+-.....
T Consensus 123 gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~ 202 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA 202 (700)
T ss_pred CCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC
Confidence 45568999999876 555655555444555655555 44455543321 2489999999999998888766332211
Q ss_pred ChhHHHHHHHHHHHcCCChhHHHHH
Q 005709 96 SPDLLELSEEVAHYANGNPLALQVL 120 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPLai~~~ 120 (681)
. -.+....|++.++|-|.....+
T Consensus 203 ~--d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 203 H--EVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred C--CHHHHHHHHHHcCCCHHHHHHH
Confidence 1 1234577899999988655444
No 133
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=66.12 E-value=18 Score=35.78 Aligned_cols=97 Identities=16% Similarity=0.134 Sum_probs=53.3
Q ss_pred EEEEEECcChh----HHHhhcCCCC-CCCCc-EEEEEeCCchhhh--------ccCCceEEEcCCCCHHHHHHHHHHHhc
Q 005709 25 VLIVLDDVDDN----SKNFAGGLEL-FSPGS-RIIITTRDKRLLD--------KRRVENVYEVKGLKHNSALELFCRKAF 90 (681)
Q Consensus 25 ~LiVLDdv~~~----~~~l~~~~~~-~~~gS-rIivTTR~~~v~~--------~~~~~~~~~l~~L~~~e~~~Lf~~~af 90 (681)
-+||+||++.. -+.+...+.. ...|. .||+|++...... .+.....++++++++++-..++.+.+-
T Consensus 92 ~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~ 171 (227)
T PRK08903 92 ELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAA 171 (227)
T ss_pred CEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHH
Confidence 46889999754 1122221111 12344 3666666432211 222246899999999887776665432
Q ss_pred cCC-CCChhHHHHHHHHHHHcCCChhHHHHHHhhh
Q 005709 91 RQN-NRSPDLLELSEEVAHYANGNPLALQVLGSSL 124 (681)
Q Consensus 91 ~~~-~~~~~~~~~~~~i~~~c~GlPLai~~~g~~L 124 (681)
... ... ++....+++.+.|.+..++.+-..|
T Consensus 172 ~~~v~l~---~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 172 ERGLQLA---DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HcCCCCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 211 111 3455666777888888776665544
No 134
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=64.42 E-value=23 Score=42.23 Aligned_cols=98 Identities=17% Similarity=0.096 Sum_probs=62.8
Q ss_pred CCCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCCc-hhhhccCC-ceEEEcCCCCHHHHHHHHHHHhccCCC
Q 005709 21 QQRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRDK-RLLDKRRV-ENVYEVKGLKHNSALELFCRKAFRQNN 94 (681)
Q Consensus 21 ~~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~~~-~~~~~l~~L~~~e~~~Lf~~~af~~~~ 94 (681)
.+++-++|||++... .+.|...+.......++|.+|.+. .+...+.. ...|++++|+.++..+.+.+.+-...-
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI 196 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL 196 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 366779999999876 555555554444566666655444 45433211 358999999999999888776533211
Q ss_pred CChhHHHHHHHHHHHcCCChhHHHHH
Q 005709 95 RSPDLLELSEEVAHYANGNPLALQVL 120 (681)
Q Consensus 95 ~~~~~~~~~~~i~~~c~GlPLai~~~ 120 (681)
.--.+....|++.++|.|--+..+
T Consensus 197 --~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 197 --PFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred --CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 112345677889999988644444
No 135
>PLN03025 replication factor C subunit; Provisional
Probab=64.01 E-value=36 Score=35.72 Aligned_cols=93 Identities=14% Similarity=0.228 Sum_probs=56.8
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCCc-hhhhccC-CceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRDK-RLLDKRR-VENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~~-~~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
++.-++|||+++.. -..|..........+++|++|... .+..... -...++++++++++..+.+...+-+..-.
T Consensus 98 ~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~ 177 (319)
T PLN03025 98 GRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVP 177 (319)
T ss_pred CCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCC
Confidence 34568999999876 233333333335667787777543 3322221 12478999999999988888776432211
Q ss_pred ChhHHHHHHHHHHHcCCChhH
Q 005709 96 SPDLLELSEEVAHYANGNPLA 116 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPLa 116 (681)
-+ .+....+++.++|-.-.
T Consensus 178 i~--~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 178 YV--PEGLEAIIFTADGDMRQ 196 (319)
T ss_pred CC--HHHHHHHHHHcCCCHHH
Confidence 11 34567888888886533
No 136
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=62.80 E-value=5.7 Score=24.65 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=12.9
Q ss_pred CCCceEEEcCCCCcccc
Q 005709 336 PNYLIELNLPYSKVEQI 352 (681)
Q Consensus 336 l~~L~~L~L~~n~l~~l 352 (681)
+.+|++|+|+.|.|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 45788888888888654
No 137
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=60.16 E-value=84 Score=33.60 Aligned_cols=94 Identities=14% Similarity=0.160 Sum_probs=56.4
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEe-CCchhhhcc-CCceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITT-RDKRLLDKR-RVENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTT-R~~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
+++-+||+|+++.. ++.+...+........+|++| +.+.+.... .....++++++++++..+.+...+-+..-.
T Consensus 107 ~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~ 186 (367)
T PRK14970 107 GKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK 186 (367)
T ss_pred CCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCC
Confidence 45557999998654 555544333323455566555 433443322 123478999999999988888877543321
Q ss_pred ChhHHHHHHHHHHHcCCChhHH
Q 005709 96 SPDLLELSEEVAHYANGNPLAL 117 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPLai 117 (681)
-+ .+.+..++++++|-+-.+
T Consensus 187 i~--~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 187 FE--DDALHIIAQKADGALRDA 206 (367)
T ss_pred CC--HHHHHHHHHhCCCCHHHH
Confidence 11 345677778888865533
No 138
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=59.89 E-value=38 Score=39.27 Aligned_cols=96 Identities=9% Similarity=0.019 Sum_probs=57.3
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCCc-hhhhcc-CCceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRDK-RLLDKR-RVENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
+++-++|+|+++.. ...|...+..-....++|++|.+. .+...+ +-...+.+++++.++..+.+.+.+-+..-.
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~ 197 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA 197 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 56668999999765 333333333333556677776554 333222 112367888999999888887765432211
Q ss_pred ChhHHHHHHHHHHHcCCChhHHHH
Q 005709 96 SPDLLELSEEVAHYANGNPLALQV 119 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPLai~~ 119 (681)
. -......|++.++|-+.-+..
T Consensus 198 i--d~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 198 Y--EPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred c--CHHHHHHHHHHhCCCHHHHHH
Confidence 1 134557788888887754433
No 139
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=59.10 E-value=28 Score=35.89 Aligned_cols=95 Identities=18% Similarity=0.211 Sum_probs=62.0
Q ss_pred EEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCCch-hhhccCC-ceEEEcCCCCHHHHHHHHHHHhccCCCCChh
Q 005709 25 VLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRDKR-LLDKRRV-ENVYEVKGLKHNSALELFCRKAFRQNNRSPD 98 (681)
Q Consensus 25 ~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~~~-v~~~~~~-~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~ 98 (681)
=.||||+++.. |.+|....+.+...+|-|..|-.-+ +..-+.. ...|..++|..++..+-+..-|-+.+-.-
T Consensus 131 KiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~-- 208 (346)
T KOG0989|consen 131 KIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDI-- 208 (346)
T ss_pred eEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCC--
Confidence 36889999877 8888887777777777666554432 2222211 23789999999998888887775433221
Q ss_pred HHHHHHHHHHHcCC-ChhHHHHHH
Q 005709 99 LLELSEEVAHYANG-NPLALQVLG 121 (681)
Q Consensus 99 ~~~~~~~i~~~c~G-lPLai~~~g 121 (681)
-.+..+.|+++++| +--|+.++-
T Consensus 209 d~~al~~I~~~S~GdLR~Ait~Lq 232 (346)
T KOG0989|consen 209 DDDALKLIAKISDGDLRRAITTLQ 232 (346)
T ss_pred CHHHHHHHHHHcCCcHHHHHHHHH
Confidence 23455788888988 444544443
No 140
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=57.46 E-value=55 Score=37.79 Aligned_cols=96 Identities=13% Similarity=0.026 Sum_probs=60.0
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCCch-hhhcc-CCceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRDKR-LLDKR-RVENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~~~-v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
+++-++|+|+|... ...|...+..-..+.++|++|.+.+ +.... .-...+++++++.++..+.+.+.+-+....
T Consensus 117 gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~ 196 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA 196 (702)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC
Confidence 56668999999865 4444444443345667887776642 32221 123489999999999988887766432211
Q ss_pred ChhHHHHHHHHHHHcCCChhHHHH
Q 005709 96 SPDLLELSEEVAHYANGNPLALQV 119 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPLai~~ 119 (681)
--.+....|++.++|-+-.+..
T Consensus 197 --id~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 197 --ADQDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred --CCHHHHHHHHHHcCCCHHHHHH
Confidence 1133456788888887654443
No 141
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=56.63 E-value=78 Score=37.87 Aligned_cols=94 Identities=11% Similarity=0.060 Sum_probs=58.0
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCC-chhhhccC-CceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRD-KRLLDKRR-VENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~-~~v~~~~~-~~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
+++=++|||+++.. .+.|...+..-.....+|++|.+ ..+...+. -...|++..++.++-.+.+.+.+-.....
T Consensus 119 ~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~ 198 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP 198 (824)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 45557889999876 55555555444466666655543 34554432 24589999999998888777654222211
Q ss_pred ChhHHHHHHHHHHHcCCChhHH
Q 005709 96 SPDLLELSEEVAHYANGNPLAL 117 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPLai 117 (681)
--.+....|++.++|-+..+
T Consensus 199 --id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 199 --VEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred --CCHHHHHHHHHHcCCCHHHH
Confidence 11334567888889877443
No 142
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=54.40 E-value=78 Score=36.39 Aligned_cols=97 Identities=14% Similarity=0.092 Sum_probs=60.5
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCC-chhhhcc-CCceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRD-KRLLDKR-RVENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~-~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
+++-++|+|+++.. .+.|...+..-.....+|++|.+ ..+.... .-...++++.++..+..+.+.+.+......
T Consensus 119 ~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~ 198 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN 198 (585)
T ss_pred CCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 45668999998754 45555444443456667666644 3343322 113478899999999888888776443221
Q ss_pred ChhHHHHHHHHHHHcCCChhHHHHH
Q 005709 96 SPDLLELSEEVAHYANGNPLALQVL 120 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPLai~~~ 120 (681)
- -.+.+..+++.++|.+..+...
T Consensus 199 i--~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 199 L--EPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred C--CHHHHHHHHHHcCCCHHHHHHH
Confidence 1 1345678889999988655443
No 143
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=54.03 E-value=1.2e+02 Score=33.55 Aligned_cols=92 Identities=13% Similarity=0.088 Sum_probs=55.8
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeC-CchhhhccC-CceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTR-DKRLLDKRR-VENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR-~~~v~~~~~-~~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
+++-++|+|+++.. .+.|...+..-..+..+|++|. .+.+...+. -...++++++++++..+.+.+.+-+..-.
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~ 199 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE 199 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 56668899998755 4444444443345666666663 334443321 23478999999999888777665332211
Q ss_pred ChhHHHHHHHHHHHcCCChh
Q 005709 96 SPDLLELSEEVAHYANGNPL 115 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPL 115 (681)
--.+.+..++++++|.+-
T Consensus 200 --i~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 200 --TSREALLPIARAAQGSLR 217 (451)
T ss_pred --CCHHHHHHHHHHcCCCHH
Confidence 113456778888888654
No 144
>PRK04195 replication factor C large subunit; Provisional
Probab=53.63 E-value=1.7e+02 Score=32.68 Aligned_cols=95 Identities=21% Similarity=0.175 Sum_probs=57.5
Q ss_pred CeEEEEEECcChh--------HHHhhcCCCCCCCCcEEEEEeCCch-hhh-cc-CCceEEEcCCCCHHHHHHHHHHHhcc
Q 005709 23 RKVLIVLDDVDDN--------SKNFAGGLELFSPGSRIIITTRDKR-LLD-KR-RVENVYEVKGLKHNSALELFCRKAFR 91 (681)
Q Consensus 23 kr~LiVLDdv~~~--------~~~l~~~~~~~~~gSrIivTTR~~~-v~~-~~-~~~~~~~l~~L~~~e~~~Lf~~~af~ 91 (681)
++-+||+|+++.. ++.+...+. ..+..||+|+-+.. +.. .. .....+++++++..+....+...+.+
T Consensus 98 ~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~ 175 (482)
T PRK04195 98 RRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRK 175 (482)
T ss_pred CCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHH
Confidence 6779999999753 333333332 23445777765432 211 11 23457899999999998888777644
Q ss_pred CCCCChhHHHHHHHHHHHcCCChhHHHHHH
Q 005709 92 QNNRSPDLLELSEEVAHYANGNPLALQVLG 121 (681)
Q Consensus 92 ~~~~~~~~~~~~~~i~~~c~GlPLai~~~g 121 (681)
....-+ .+....|++.++|-.-++....
T Consensus 176 egi~i~--~eaL~~Ia~~s~GDlR~ain~L 203 (482)
T PRK04195 176 EGIECD--DEALKEIAERSGGDLRSAINDL 203 (482)
T ss_pred cCCCCC--HHHHHHHHHHcCCCHHHHHHHH
Confidence 332111 3556788888988665554433
No 145
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=53.51 E-value=76 Score=35.86 Aligned_cols=97 Identities=19% Similarity=0.133 Sum_probs=60.8
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCCc-hhhhccC-CceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRDK-RLLDKRR-VENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~~-~~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
+++-++|+|+++.. .+.|...+..-.+..++|++|.++ .+..... -...+++.+++.++..+.+.+.+-...-.
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~ 195 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS 195 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 45568899999765 445554444445667777777664 3322221 13489999999999888877665332211
Q ss_pred ChhHHHHHHHHHHHcCCChhHHHHH
Q 005709 96 SPDLLELSEEVAHYANGNPLALQVL 120 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPLai~~~ 120 (681)
. -.+.+..|++.++|.+--+..+
T Consensus 196 i--~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 196 Y--EPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred C--CHHHHHHHHHHcCCcHHHHHHH
Confidence 1 1345678888899987544443
No 146
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=53.15 E-value=32 Score=37.35 Aligned_cols=62 Identities=23% Similarity=0.153 Sum_probs=45.5
Q ss_pred CeEEEEEECcChh--HHHhhcCCCCCCCCcEEEEEeCCchhhhcc------CCceEEEcCCCCHHHHHHHH
Q 005709 23 RKVLIVLDDVDDN--SKNFAGGLELFSPGSRIIITTRDKRLLDKR------RVENVYEVKGLKHNSALELF 85 (681)
Q Consensus 23 kr~LiVLDdv~~~--~~~l~~~~~~~~~gSrIivTTR~~~v~~~~------~~~~~~~l~~L~~~e~~~Lf 85 (681)
++.+|+||.|... |+.....+-+.++. +|++|+-+..+...- |-...+++.||+-.|-..+-
T Consensus 94 ~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 94 EKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred CCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 6789999999888 77766666555566 899988776554322 22458999999999887653
No 147
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.90 E-value=58 Score=36.13 Aligned_cols=95 Identities=13% Similarity=-0.018 Sum_probs=59.4
Q ss_pred CCCeEEEEEECcChh----HHHhhcCCCCCCCCcEEE-EEeCCchhhhccCC-ceEEEcCCCCHHHHHHHHHHHhccCCC
Q 005709 21 QQRKVLIVLDDVDDN----SKNFAGGLELFSPGSRII-ITTRDKRLLDKRRV-ENVYEVKGLKHNSALELFCRKAFRQNN 94 (681)
Q Consensus 21 ~~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIi-vTTR~~~v~~~~~~-~~~~~l~~L~~~e~~~Lf~~~af~~~~ 94 (681)
.+++-++|+|+|+.. ++.|...+..-......| .||....+...+.. ...|.+++++.++-.+.+.+.+-...-
T Consensus 119 ~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi 198 (484)
T PRK14956 119 GGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV 198 (484)
T ss_pred cCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC
Confidence 356668999999876 666665554433444444 45544455444322 237999999999888887776533221
Q ss_pred CChhHHHHHHHHHHHcCCChhHH
Q 005709 95 RSPDLLELSEEVAHYANGNPLAL 117 (681)
Q Consensus 95 ~~~~~~~~~~~i~~~c~GlPLai 117 (681)
. --.+....|++.++|.+--+
T Consensus 199 ~--~e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 199 Q--YDQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred C--CCHHHHHHHHHHcCChHHHH
Confidence 1 11345678889999987443
No 148
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.02 E-value=69 Score=36.30 Aligned_cols=92 Identities=15% Similarity=0.017 Sum_probs=56.0
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEE-EeCCchhhhccC-CceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIII-TTRDKRLLDKRR-VENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIiv-TTR~~~v~~~~~-~~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
+++-++|+|+++.. .+.|...+.......++|. ||....+...+. -...+++++++.++-.+.+.+.+-+..-
T Consensus 118 g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi- 196 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI- 196 (546)
T ss_pred CCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC-
Confidence 56679999999765 5555555554445665664 544444543321 2358999999999988777765432211
Q ss_pred ChhHHHHHHHHHHHcCCChh
Q 005709 96 SPDLLELSEEVAHYANGNPL 115 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPL 115 (681)
.--......|++.++|-+-
T Consensus 197 -~~e~~Al~~Ia~~s~GdlR 215 (546)
T PRK14957 197 -NSDEQSLEYIAYHAKGSLR 215 (546)
T ss_pred -CCCHHHHHHHHHHcCCCHH
Confidence 1113344677888888553
No 149
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=50.61 E-value=11 Score=37.12 Aligned_cols=48 Identities=29% Similarity=0.476 Sum_probs=29.2
Q ss_pred eEEEEEECcChh-----HHHhhcCCCCCCCCcEEEEEeCCchhhhccCCceEEEc
Q 005709 24 KVLIVLDDVDDN-----SKNFAGGLELFSPGSRIIITTRDKRLLDKRRVENVYEV 73 (681)
Q Consensus 24 r~LiVLDdv~~~-----~~~l~~~~~~~~~gSrIivTTR~~~v~~~~~~~~~~~l 73 (681)
-=++|||||+.. .+.+...+......+.+||||.++.+.... +..|.|
T Consensus 159 ~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a--~~~~~v 211 (220)
T PF02463_consen 159 SPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDA--DKLIGV 211 (220)
T ss_dssp -SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT---SEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc--cccccc
Confidence 347899999765 333333333345678999999999888765 334444
No 150
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=50.35 E-value=17 Score=33.87 Aligned_cols=46 Identities=15% Similarity=0.268 Sum_probs=29.9
Q ss_pred HHHHHHhCCCe-EEEEEECcChh-------HHHhhcCCCCCCCCcEEEEEeCCc
Q 005709 14 PNIKKRLQQRK-VLIVLDDVDDN-------SKNFAGGLELFSPGSRIIITTRDK 59 (681)
Q Consensus 14 ~~i~~~L~~kr-~LiVLDdv~~~-------~~~l~~~~~~~~~gSrIivTTR~~ 59 (681)
+..++.+.... =|+|||++-.. .+.+...+.....+.-||+|.|+.
T Consensus 85 ~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 85 AFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 44556665544 49999998654 334444333334677899999986
No 151
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=50.19 E-value=55 Score=35.61 Aligned_cols=89 Identities=19% Similarity=0.259 Sum_probs=50.8
Q ss_pred EEEEECcChh-----H-HHhhcCCCC-CCCCcEEEEEeCC-ch--------hhhccCCceEEEcCCCCHHHHHHHHHHHh
Q 005709 26 LIVLDDVDDN-----S-KNFAGGLEL-FSPGSRIIITTRD-KR--------LLDKRRVENVYEVKGLKHNSALELFCRKA 89 (681)
Q Consensus 26 LiVLDdv~~~-----~-~~l~~~~~~-~~~gSrIivTTR~-~~--------v~~~~~~~~~~~l~~L~~~e~~~Lf~~~a 89 (681)
+|||||++.. + +.+...+.. ...|..||+||.. .. +...+.....+++++.+.++-.+++.+.+
T Consensus 202 lLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~ 281 (405)
T TIGR00362 202 LLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKA 281 (405)
T ss_pred EEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHH
Confidence 7889999743 1 122221111 1234567777753 22 22223334579999999999999999887
Q ss_pred ccCCCCChhHHHHHHHHHHHcCCChhH
Q 005709 90 FRQNNRSPDLLELSEEVAHYANGNPLA 116 (681)
Q Consensus 90 f~~~~~~~~~~~~~~~i~~~c~GlPLa 116 (681)
-.....-+ +++...|++++.|..-.
T Consensus 282 ~~~~~~l~--~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 282 EEEGLELP--DEVLEFIAKNIRSNVRE 306 (405)
T ss_pred HHcCCCCC--HHHHHHHHHhcCCCHHH
Confidence 43322111 34556666666665543
No 152
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.82 E-value=67 Score=35.78 Aligned_cols=99 Identities=15% Similarity=0.084 Sum_probs=59.2
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCC-chhhhccC-CceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRD-KRLLDKRR-VENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~-~~v~~~~~-~~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
+++-++|+|+++.. .+.|...+........+|++|.+ ..+..... -...+++++++.++....+.+.+-...-.
T Consensus 116 ~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~ 195 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE 195 (472)
T ss_pred CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC
Confidence 45669999999764 44555544433344444444433 34433331 23489999999999888888776432211
Q ss_pred ChhHHHHHHHHHHHcCC-ChhHHHHHHh
Q 005709 96 SPDLLELSEEVAHYANG-NPLALQVLGS 122 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~G-lPLai~~~g~ 122 (681)
- -.+....|+++++| ++.|+..+..
T Consensus 196 i--~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 196 I--DREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred C--CHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 1 13445667777765 5666666654
No 153
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.57 E-value=1.1e+02 Score=35.42 Aligned_cols=96 Identities=14% Similarity=0.088 Sum_probs=59.9
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCC-chhhhcc-CCceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRD-KRLLDKR-RVENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~-~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
++.-++|||+|+.. ...|...+..-....++|.+|.+ ..+.... .-...+++++++.++..+.+.+.+-+..-.
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ 202 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP 202 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 34458899999876 55566555544455566655544 3444332 123589999999999988888766432221
Q ss_pred ChhHHHHHHHHHHHcCCChhHHHH
Q 005709 96 SPDLLELSEEVAHYANGNPLALQV 119 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPLai~~ 119 (681)
.+ .+....|++.++|-+--+..
T Consensus 203 ie--~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 203 AE--PQALRLLARAARGSMRDALS 224 (618)
T ss_pred CC--HHHHHHHHHHcCCCHHHHHH
Confidence 11 34456778888886654443
No 154
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.66 E-value=1.6e+02 Score=33.98 Aligned_cols=95 Identities=14% Similarity=0.128 Sum_probs=58.8
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEe-CCchhhhccC-CceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITT-RDKRLLDKRR-VENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTT-R~~~v~~~~~-~~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
+++=++|+|+++.. .+.|...+..-..++.+|.+| +.+.+...+. -..++++++++.++..+.+.+.+-...-.
T Consensus 120 ~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~ 199 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT 199 (614)
T ss_pred CCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 34557899998765 444554444434566665544 5455554432 23489999999999988888766433211
Q ss_pred ChhHHHHHHHHHHHcCCChhHHH
Q 005709 96 SPDLLELSEEVAHYANGNPLALQ 118 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPLai~ 118 (681)
. -.+.+..|++.++|-.--+.
T Consensus 200 i--~~~al~~La~~s~gdlr~al 220 (614)
T PRK14971 200 A--EPEALNVIAQKADGGMRDAL 220 (614)
T ss_pred C--CHHHHHHHHHHcCCCHHHHH
Confidence 1 12345778888888665443
No 155
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.41 E-value=1.7e+02 Score=33.84 Aligned_cols=91 Identities=14% Similarity=0.102 Sum_probs=55.5
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEe-CCchhhhcc-CCceEEEcCCCCHHHHHHHHHHHhccCC-C
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITT-RDKRLLDKR-RVENVYEVKGLKHNSALELFCRKAFRQN-N 94 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTT-R~~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~af~~~-~ 94 (681)
+.+-++|+|+++.. .+.|...+..-...+.+|.+| +.+.+...+ .-...+++.+++.++....+.+.+-... .
T Consensus 126 ~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~ 205 (620)
T PRK14954 126 GRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ 205 (620)
T ss_pred CCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC
Confidence 44557899998765 444555444434556655544 444554433 2245899999999998877766553222 1
Q ss_pred CChhHHHHHHHHHHHcCCChh
Q 005709 95 RSPDLLELSEEVAHYANGNPL 115 (681)
Q Consensus 95 ~~~~~~~~~~~i~~~c~GlPL 115 (681)
.. .+.+..+++.++|-.-
T Consensus 206 I~---~eal~~La~~s~Gdlr 223 (620)
T PRK14954 206 ID---ADALQLIARKAQGSMR 223 (620)
T ss_pred CC---HHHHHHHHHHhCCCHH
Confidence 21 3456778888998544
No 156
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=46.55 E-value=13 Score=22.71 Aligned_cols=11 Identities=45% Similarity=0.694 Sum_probs=5.0
Q ss_pred CCCEEeccCCC
Q 005709 428 LLSHLDASNCK 438 (681)
Q Consensus 428 ~L~~L~l~~c~ 438 (681)
+|+.|++++|.
T Consensus 3 ~L~~L~l~~C~ 13 (26)
T smart00367 3 NLRELDLSGCT 13 (26)
T ss_pred CCCEeCCCCCC
Confidence 34444444443
No 157
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=46.27 E-value=9.7 Score=22.73 Aligned_cols=14 Identities=21% Similarity=0.323 Sum_probs=8.9
Q ss_pred CCceEEEcCCCCcc
Q 005709 337 NYLIELNLPYSKVE 350 (681)
Q Consensus 337 ~~L~~L~L~~n~l~ 350 (681)
++|++|+|++|.|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 56778888888765
No 158
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.86 E-value=54 Score=35.63 Aligned_cols=96 Identities=14% Similarity=0.060 Sum_probs=59.2
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEe-CCchhhhccC-CceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITT-RDKRLLDKRR-VENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTT-R~~~v~~~~~-~~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
+++-++|+|+++.. ++.|...+....+.+.+|++| +.+.+..... -...++++++++++..+.+...+-.....
T Consensus 126 ~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~ 205 (397)
T PRK14955 126 GRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGIS 205 (397)
T ss_pred CCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 45568899998754 555555555445677766655 4444443321 12378999999998887777665322110
Q ss_pred ChhHHHHHHHHHHHcCCChhHHHH
Q 005709 96 SPDLLELSEEVAHYANGNPLALQV 119 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPLai~~ 119 (681)
--.+.+..++..++|.+--+..
T Consensus 206 --i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 206 --VDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred --CCHHHHHHHHHHcCCCHHHHHH
Confidence 1144567888999997754433
No 159
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=45.82 E-value=63 Score=34.06 Aligned_cols=66 Identities=21% Similarity=0.246 Sum_probs=43.5
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCCc-hhhhccCC-ceEEEcCCCCHHHHHHHHHH
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRDK-RLLDKRRV-ENVYEVKGLKHNSALELFCR 87 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~~~-~~~~~l~~L~~~e~~~Lf~~ 87 (681)
+.+=++|+|+++.. -..|...+..-.+++.+|.+|.+. .+...+.. ...+++++++.++..+.+..
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 44456889998765 344444444445777788777654 44444322 34899999999998777764
No 160
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=45.64 E-value=3.6e+02 Score=32.65 Aligned_cols=136 Identities=11% Similarity=0.074 Sum_probs=71.3
Q ss_pred eEEEEEECcChh-------HHHhhcCCCCCCCCcEEEE--EeCC--------chhhhccCCceEEEcCCCCHHHHHHHHH
Q 005709 24 KVLIVLDDVDDN-------SKNFAGGLELFSPGSRIII--TTRD--------KRLLDKRRVENVYEVKGLKHNSALELFC 86 (681)
Q Consensus 24 r~LiVLDdv~~~-------~~~l~~~~~~~~~gSrIiv--TTR~--------~~v~~~~~~~~~~~l~~L~~~e~~~Lf~ 86 (681)
..+||||+|+.. +-.|..... ..+++|+| +|.+ ++|...++. ..+..++.+.++-.+++.
T Consensus 870 v~IIILDEID~L~kK~QDVLYnLFR~~~--~s~SKLiLIGISNdlDLperLdPRLRSRLg~-eeIvF~PYTaEQL~dILk 946 (1164)
T PTZ00112 870 VSILIIDEIDYLITKTQKVLFTLFDWPT--KINSKLVLIAISNTMDLPERLIPRCRSRLAF-GRLVFSPYKGDEIEKIIK 946 (1164)
T ss_pred ceEEEeehHhhhCccHHHHHHHHHHHhh--ccCCeEEEEEecCchhcchhhhhhhhhcccc-ccccCCCCCHHHHHHHHH
Confidence 358999999865 222222111 24566655 3322 122222222 235669999999999999
Q ss_pred HHhccC-CCCCh-hHHHHHHHHHHHcCCChhHHHHHHhhhcC-----CCHHHHHHHHHHhhhcCChhHHHHHHHHhcCCC
Q 005709 87 RKAFRQ-NNRSP-DLLELSEEVAHYANGNPLALQVLGSSLYQ-----KSKEQWKDKLRKLKLITDPNIYKVLKISYDGLN 159 (681)
Q Consensus 87 ~~af~~-~~~~~-~~~~~~~~i~~~c~GlPLai~~~g~~L~~-----k~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~ 159 (681)
..|-.. ....+ ..+-+|+.++...|-.-.||.++-..... -+.+..+.+..++...+ +.-.-..||
T Consensus 947 ~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikegskVT~eHVrkAleeiE~sr-------I~e~IktLP 1019 (1164)
T PTZ00112 947 ERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRGQKIVPRDITEATNQLFDSP-------LTNAINYLP 1019 (1164)
T ss_pred HHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHHHhhh-------HHHHHHcCC
Confidence 987432 12223 34445555554445566676666544432 13344444444332211 222335788
Q ss_pred HHHHHHHhhh
Q 005709 160 WEEKEIFLDV 169 (681)
Q Consensus 160 ~~~k~cfl~~ 169 (681)
.+.|..++-+
T Consensus 1020 lHqKLVLlAL 1029 (1164)
T PTZ00112 1020 WPFKMFLTCL 1029 (1164)
T ss_pred HHHHHHHHHH
Confidence 8877655533
No 161
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=45.00 E-value=1.6e+02 Score=34.67 Aligned_cols=96 Identities=10% Similarity=0.016 Sum_probs=58.1
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEE-EEeCCchhhhccC-CceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRII-ITTRDKRLLDKRR-VENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIi-vTTR~~~v~~~~~-~~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
+++-++|+|+++.. +..|...+..-.....+| +||+...+..... -...+++.+++.++..+.+...+-+..-.
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~ 196 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENIS 196 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 55668899999755 555555444434455555 4544445544321 23489999999999888887755332211
Q ss_pred ChhHHHHHHHHHHHcCCChhHHHH
Q 005709 96 SPDLLELSEEVAHYANGNPLALQV 119 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPLai~~ 119 (681)
. -.+.+..+++.++|-+--+..
T Consensus 197 i--d~eAl~~LA~lS~GslR~Als 218 (725)
T PRK07133 197 Y--EKNALKLIAKLSSGSLRDALS 218 (725)
T ss_pred C--CHHHHHHHHHHcCCCHHHHHH
Confidence 1 123466788889886643333
No 162
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=43.97 E-value=62 Score=37.10 Aligned_cols=66 Identities=14% Similarity=0.310 Sum_probs=42.7
Q ss_pred EEEEECcChh-----HH-HhhcCCCC-CCCCcEEEEEeCCc---------hhhhccCCceEEEcCCCCHHHHHHHHHHHh
Q 005709 26 LIVLDDVDDN-----SK-NFAGGLEL-FSPGSRIIITTRDK---------RLLDKRRVENVYEVKGLKHNSALELFCRKA 89 (681)
Q Consensus 26 LiVLDdv~~~-----~~-~l~~~~~~-~~~gSrIivTTR~~---------~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~a 89 (681)
+|||||+... |+ .|...+.. ...|..|||||+.. ++...+....+++++..+.+.-.+++.+++
T Consensus 380 LLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka 459 (617)
T PRK14086 380 ILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKA 459 (617)
T ss_pred EEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHH
Confidence 7889999643 21 12111110 12456688888752 233444556799999999999999999887
Q ss_pred cc
Q 005709 90 FR 91 (681)
Q Consensus 90 f~ 91 (681)
-.
T Consensus 460 ~~ 461 (617)
T PRK14086 460 VQ 461 (617)
T ss_pred Hh
Confidence 43
No 163
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=43.12 E-value=1e+02 Score=29.88 Aligned_cols=64 Identities=19% Similarity=0.168 Sum_probs=38.7
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCCc-hhhhccCC--------------ceEEEcCCCCHHHHH
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRDK-RLLDKRRV--------------ENVYEVKGLKHNSAL 82 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~~~--------------~~~~~l~~L~~~e~~ 82 (681)
.+|+ |+|+++.. ..+|...+..-..+..+|++|.++ .++..+.. .-.+.+++|+.++..
T Consensus 55 ~~k~--iI~~a~~l~~~A~NaLLK~LEEPp~~~~fiL~t~~~~~llpTI~SRc~~~~~~~~~~~~~l~l~l~~l~~~~i~ 132 (206)
T PRK08485 55 EEKI--IVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLIIEKRKQKKPVKPLDLDLKKLDLKDIY 132 (206)
T ss_pred CcEE--EEEchHhhCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCchHHHhhheeccccccccccccccccCCCCHHHHH
Confidence 3453 56788654 444444443334666666666655 45543321 124789999999999
Q ss_pred HHHHH
Q 005709 83 ELFCR 87 (681)
Q Consensus 83 ~Lf~~ 87 (681)
+.+..
T Consensus 133 ~~L~~ 137 (206)
T PRK08485 133 EFLKE 137 (206)
T ss_pred HHHHH
Confidence 99887
No 164
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=42.30 E-value=97 Score=36.51 Aligned_cols=89 Identities=15% Similarity=0.218 Sum_probs=53.1
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEE--eCCc--hhhhccC-CceEEEcCCCCHHHHHHHHHHHhcc-
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIIT--TRDK--RLLDKRR-VENVYEVKGLKHNSALELFCRKAFR- 91 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivT--TR~~--~v~~~~~-~~~~~~l~~L~~~e~~~Lf~~~af~- 91 (681)
+++.+||||||+.. .+.|.... ..|+.++|+ |++. .+..... -...+++++|+.++..+++.+.+-.
T Consensus 108 ~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~ 184 (725)
T PRK13341 108 GKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDK 184 (725)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHH
Confidence 46779999999754 55565543 346666664 3332 1222111 1347999999999999998876531
Q ss_pred -----CCCCChhHHHHHHHHHHHcCCCh
Q 005709 92 -----QNNRSPDLLELSEEVAHYANGNP 114 (681)
Q Consensus 92 -----~~~~~~~~~~~~~~i~~~c~GlP 114 (681)
.... .--.+....+++++.|.-
T Consensus 185 ~~~~g~~~v-~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 185 ERGYGDRKV-DLEPEAEKHLVDVANGDA 211 (725)
T ss_pred HhhcCCccc-CCCHHHHHHHHHhCCCCH
Confidence 1111 111344567777787753
No 165
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.20 E-value=2.2e+02 Score=32.22 Aligned_cols=94 Identities=14% Similarity=0.021 Sum_probs=56.7
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCCc-hhhhccC-CceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRDK-RLLDKRR-VENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~~-~~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
+++-++|+|+++.. ...|...+..-.....+|.+|.++ .+...+. -...+++++++.++..+.+.+.+-...-.
T Consensus 118 ~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~ 197 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP 197 (527)
T ss_pred CCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 45668999999865 444444444434566666666443 3332221 12478999999999888777655332211
Q ss_pred ChhHHHHHHHHHHHcCCChhHH
Q 005709 96 SPDLLELSEEVAHYANGNPLAL 117 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPLai 117 (681)
.-......+++.++|.+--+
T Consensus 198 --~~~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 198 --FDATALQLLARAAAGSMRDA 217 (527)
T ss_pred --CCHHHHHHHHHHcCCCHHHH
Confidence 11334567888889976533
No 166
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=42.11 E-value=3.4e+02 Score=31.33 Aligned_cols=96 Identities=16% Similarity=0.114 Sum_probs=59.3
Q ss_pred CeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEe-CCchhhhccC-CceEEEcCCCCHHHHHHHHHHHhccCCCCC
Q 005709 23 RKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITT-RDKRLLDKRR-VENVYEVKGLKHNSALELFCRKAFRQNNRS 96 (681)
Q Consensus 23 kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTT-R~~~v~~~~~-~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~ 96 (681)
++=++|+|+++.. .+.|...+..-.+++++|++| ....+...+. -...++++.++.++..+.+.+.+-+.....
T Consensus 132 ~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i 211 (598)
T PRK09111 132 RYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV 211 (598)
T ss_pred CcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 4446899999765 444444444334566666554 4444544332 234889999999999888887764332111
Q ss_pred hhHHHHHHHHHHHcCCChhHHHHH
Q 005709 97 PDLLELSEEVAHYANGNPLALQVL 120 (681)
Q Consensus 97 ~~~~~~~~~i~~~c~GlPLai~~~ 120 (681)
-.+....|++.++|-+.-+...
T Consensus 212 --~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 212 --EDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred --CHHHHHHHHHHcCCCHHHHHHH
Confidence 1245677888899987655443
No 167
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=41.59 E-value=87 Score=33.13 Aligned_cols=90 Identities=18% Similarity=0.131 Sum_probs=56.7
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCCc-hhhhccCC-ceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRDK-RLLDKRRV-ENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~~~-~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
+++=.+|+|+++.. -..|...+..-.+++.+|.+|... .++..+.+ ...+.+.+++.+++.+.+.... + .
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~-~---~ 182 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV-T---M 182 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc-C---C
Confidence 56668899998865 222333333224677777777765 56655422 2378999999999888776432 1 1
Q ss_pred ChhHHHHHHHHHHHcCCChhHHH
Q 005709 96 SPDLLELSEEVAHYANGNPLALQ 118 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPLai~ 118 (681)
. .+.+..++..++|-|....
T Consensus 183 ~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 183 S---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred C---HHHHHHHHHHcCCCHHHHH
Confidence 1 2225678899999997544
No 168
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.14 E-value=1.3e+02 Score=33.71 Aligned_cols=94 Identities=15% Similarity=0.131 Sum_probs=58.6
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeC-CchhhhccC-CceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTR-DKRLLDKRR-VENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR-~~~v~~~~~-~~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
+++=++|+|+++.. .+.|...+..-.+..++|.+|. .+.+...+. -...+++++++.++..+.+.+.+-+....
T Consensus 115 ~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~ 194 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE 194 (491)
T ss_pred CCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC
Confidence 45557999999765 4445444444446676666553 344444331 23588999999999988888776543321
Q ss_pred ChhHHHHHHHHHHHcCCChhHH
Q 005709 96 SPDLLELSEEVAHYANGNPLAL 117 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPLai 117 (681)
- -.+....|++.++|-+-.+
T Consensus 195 i--~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 195 H--DEESLKLIAENSSGSMRNA 214 (491)
T ss_pred C--CHHHHHHHHHHcCCCHHHH
Confidence 1 1334567888888876533
No 169
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=39.21 E-value=3.6e+02 Score=30.87 Aligned_cols=97 Identities=13% Similarity=0.107 Sum_probs=60.6
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCC-chhhhccC-CceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRD-KRLLDKRR-VENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~-~~v~~~~~-~~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
+++-++|+|++... ++.|...+..-.+...+|.+|.+ +.+...+. -...++.++++.++-.+.+.+.+......
T Consensus 118 ~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~ 197 (563)
T PRK06647 118 SRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK 197 (563)
T ss_pred CCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 55567899998765 55666655544456666655543 34443321 13478999999999888887766443321
Q ss_pred ChhHHHHHHHHHHHcCCChhHHHHH
Q 005709 96 SPDLLELSEEVAHYANGNPLALQVL 120 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPLai~~~ 120 (681)
. -.+.+..|++.++|-+-.+..+
T Consensus 198 i--d~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 198 Y--EDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred C--CHHHHHHHHHHcCCCHHHHHHH
Confidence 1 1345567888888877544433
No 170
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=38.39 E-value=1.2e+02 Score=30.47 Aligned_cols=69 Identities=13% Similarity=0.041 Sum_probs=42.7
Q ss_pred CCCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCC-chhhhccCC-ceEEEcCCCCHHHHHHHHHHHh
Q 005709 21 QQRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRD-KRLLDKRRV-ENVYEVKGLKHNSALELFCRKA 89 (681)
Q Consensus 21 ~~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~-~~v~~~~~~-~~~~~l~~L~~~e~~~Lf~~~a 89 (681)
.+++=++|+|+++.. -.+|...+..-.+++.+|.+|.+ ..++..+.. ...+.++..+..++.++....+
T Consensus 87 ~g~~KViII~~ae~mt~~AANALLKtLEEPP~~t~fILit~~~~~LLpTIrSRCq~i~~~~p~~~~~~e~~~~~~ 161 (263)
T PRK06581 87 ISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSRCFKINVRSSILHAYNELYSQFI 161 (263)
T ss_pred cCCcEEEEEechHHhCHHHHHHHHHhhcCCCCCeEEEEEeCChhhCchhHhhceEEEeCCCCCHHHHHHHHHHhc
Confidence 356678899999876 33333333333467776665554 466665532 2367777777777777766555
No 171
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=37.71 E-value=1.9e+02 Score=31.24 Aligned_cols=88 Identities=23% Similarity=0.322 Sum_probs=52.5
Q ss_pred CCeEEEEEECcChh------------------HHHhhcCCCCC--CCCcEEEEEeCCchhhhcc-----CCceEEEcCCC
Q 005709 22 QRKVLIVLDDVDDN------------------SKNFAGGLELF--SPGSRIIITTRDKRLLDKR-----RVENVYEVKGL 76 (681)
Q Consensus 22 ~kr~LiVLDdv~~~------------------~~~l~~~~~~~--~~gSrIivTTR~~~v~~~~-----~~~~~~~l~~L 76 (681)
....+|+|||++.. +..+....+.. ..+-+||.||...+.+... ..+..++++++
T Consensus 223 ~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P 302 (389)
T PRK03992 223 KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLP 302 (389)
T ss_pred cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCC
Confidence 45689999999742 12222222211 2355788888765443321 24568999999
Q ss_pred CHHHHHHHHHHHhccCCCC-ChhHHHHHHHHHHHcCCC
Q 005709 77 KHNSALELFCRKAFRQNNR-SPDLLELSEEVAHYANGN 113 (681)
Q Consensus 77 ~~~e~~~Lf~~~af~~~~~-~~~~~~~~~~i~~~c~Gl 113 (681)
+.++-.++|..++.+.... ..++. .+++.+.|.
T Consensus 303 ~~~~R~~Il~~~~~~~~~~~~~~~~----~la~~t~g~ 336 (389)
T PRK03992 303 DEEGRLEILKIHTRKMNLADDVDLE----ELAELTEGA 336 (389)
T ss_pred CHHHHHHHHHHHhccCCCCCcCCHH----HHHHHcCCC
Confidence 9999999999887543322 12343 444555553
No 172
>PRK04132 replication factor C small subunit; Provisional
Probab=36.65 E-value=2e+02 Score=34.45 Aligned_cols=95 Identities=15% Similarity=0.186 Sum_probs=60.6
Q ss_pred CeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCCc-hhhhccCC-ceEEEcCCCCHHHHHHHHHHHhccCCCCC
Q 005709 23 RKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRDK-RLLDKRRV-ENVYEVKGLKHNSALELFCRKAFRQNNRS 96 (681)
Q Consensus 23 kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~~~-~~~~~l~~L~~~e~~~Lf~~~af~~~~~~ 96 (681)
+.-++|+|+++.. ...|...+.......++|.+|-+. .+...... ...+.+++++.++-.+.+.+-+-...-.-
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i 709 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL 709 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC
Confidence 3469999999876 444555444444666777766555 44433322 35899999999988887776553322111
Q ss_pred hhHHHHHHHHHHHcCCChhHHHH
Q 005709 97 PDLLELSEEVAHYANGNPLALQV 119 (681)
Q Consensus 97 ~~~~~~~~~i~~~c~GlPLai~~ 119 (681)
-.+....|++.|+|-+-.+..
T Consensus 710 --~~e~L~~Ia~~s~GDlR~AIn 730 (846)
T PRK04132 710 --TEEGLQAILYIAEGDMRRAIN 730 (846)
T ss_pred --CHHHHHHHHHHcCCCHHHHHH
Confidence 134567889999998755443
No 173
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=36.55 E-value=5.1e+02 Score=26.90 Aligned_cols=90 Identities=14% Similarity=0.153 Sum_probs=53.7
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeC-CchhhhccC-CceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTR-DKRLLDKRR-VENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR-~~~v~~~~~-~~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
+.+=++|+||++.. ...|...+..-.+++.+|.+|. ...++..+. -...+++.++++++..+.+... + .
T Consensus 89 ~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~--~---~ 163 (299)
T PRK07132 89 SQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK--N---K 163 (299)
T ss_pred CCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc--C---C
Confidence 46667888888654 3444444444457777776554 445555432 2458999999999988776643 1 1
Q ss_pred ChhHHHHHHHHHHHcCCChhHHHH
Q 005709 96 SPDLLELSEEVAHYANGNPLALQV 119 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPLai~~ 119 (681)
. ++.+..++...+|.=-|+..
T Consensus 164 ~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 164 E---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred C---hhHHHHHHHHcCCHHHHHHH
Confidence 1 12345566666663344444
No 174
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=36.25 E-value=1e+02 Score=34.07 Aligned_cols=120 Identities=18% Similarity=0.217 Sum_probs=65.9
Q ss_pred HHHHhCCCeEEEEEECcChh------HHHhhcCCCC-CCCCcEEEEEeCCc---------hhhhccCCceEEEcCCCCHH
Q 005709 16 IKKRLQQRKVLIVLDDVDDN------SKNFAGGLEL-FSPGSRIIITTRDK---------RLLDKRRVENVYEVKGLKHN 79 (681)
Q Consensus 16 i~~~L~~kr~LiVLDdv~~~------~~~l~~~~~~-~~~gSrIivTTR~~---------~v~~~~~~~~~~~l~~L~~~ 79 (681)
+.+.++. --+|||||++.. -+.+...+.. ...|..||+||... ++...+.....+++++++.+
T Consensus 205 ~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~ 283 (450)
T PRK00149 205 FKEKYRS-VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLE 283 (450)
T ss_pred HHHHHhc-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHH
Confidence 3334442 337899999643 1222221110 12345588877643 12233344568999999999
Q ss_pred HHHHHHHHHhccCC-CCChhHHHHHHHHHHHcCCChhHHHHHHhhh------cC--CCHHHHHHHHHHh
Q 005709 80 SALELFCRKAFRQN-NRSPDLLELSEEVAHYANGNPLALQVLGSSL------YQ--KSKEQWKDKLRKL 139 (681)
Q Consensus 80 e~~~Lf~~~af~~~-~~~~~~~~~~~~i~~~c~GlPLai~~~g~~L------~~--k~~~~w~~~l~~l 139 (681)
+-.+++.+.+-... ..+ +++..-|++.+.|..-.+..+-..| .+ -+.+..+.++..+
T Consensus 284 ~r~~il~~~~~~~~~~l~---~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 284 TRIAILKKKAEEEGIDLP---DEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHHHHHHHHHHcCCCCC---HHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 99999999874322 222 3456667777777655333222111 12 2566666666654
No 175
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=36.17 E-value=11 Score=41.66 Aligned_cols=36 Identities=25% Similarity=0.323 Sum_probs=18.9
Q ss_pred CCCCCcEEEcccCCCcccCc---cccCCCccceeccccc
Q 005709 381 EIPNLERINLSGSELERLPA---TIKQFSQLRYLYLRNC 416 (681)
Q Consensus 381 ~l~~L~~L~L~~n~l~~lp~---~i~~L~~L~~L~L~~c 416 (681)
+.+.+..++|++|++..+.. --..-++|..|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 34555666666666654321 1223356666666664
No 176
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.12 E-value=2.6e+02 Score=31.23 Aligned_cols=98 Identities=11% Similarity=0.030 Sum_probs=57.5
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEe-CCchhhhcc-CCceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITT-RDKRLLDKR-RVENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTT-R~~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
+++-++|+|+++.. .+.|...+..-.+...+|++| +...+.... .-...+++.+++.++-.+.+...+-...-.
T Consensus 118 ~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~ 197 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE 197 (486)
T ss_pred CCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 55668999998754 444444444334455565555 433333322 123478999999999888877765332211
Q ss_pred ChhHHHHHHHHHHHcCCChhHHHHHH
Q 005709 96 SPDLLELSEEVAHYANGNPLALQVLG 121 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPLai~~~g 121 (681)
. -.+.+..++..++|.+-.+....
T Consensus 198 i--d~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 198 Y--EEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred C--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 12345667788888765444433
No 177
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=35.48 E-value=1.7e+02 Score=32.30 Aligned_cols=93 Identities=13% Similarity=0.175 Sum_probs=52.4
Q ss_pred HHhCCCeEEEEEECcChh-----H-HHhhcCCCC-CCCCcEEEEEeC-Cchhh--------hccCCceEEEcCCCCHHHH
Q 005709 18 KRLQQRKVLIVLDDVDDN-----S-KNFAGGLEL-FSPGSRIIITTR-DKRLL--------DKRRVENVYEVKGLKHNSA 81 (681)
Q Consensus 18 ~~L~~kr~LiVLDdv~~~-----~-~~l~~~~~~-~~~gSrIivTTR-~~~v~--------~~~~~~~~~~l~~L~~~e~ 81 (681)
+.++.+.-+|++||+... + +.+...+.. ...|..||+||. .+.-+ ..+....++++++++.++-
T Consensus 189 ~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r 268 (440)
T PRK14088 189 EKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETR 268 (440)
T ss_pred HHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHH
Confidence 333334458999999732 1 112111110 123456888874 33222 2223455889999999999
Q ss_pred HHHHHHHhccC-CCCChhHHHHHHHHHHHcCCC
Q 005709 82 LELFCRKAFRQ-NNRSPDLLELSEEVAHYANGN 113 (681)
Q Consensus 82 ~~Lf~~~af~~-~~~~~~~~~~~~~i~~~c~Gl 113 (681)
.+++.+.+-.. ...+ .++..-|++++.|.
T Consensus 269 ~~IL~~~~~~~~~~l~---~ev~~~Ia~~~~~~ 298 (440)
T PRK14088 269 KKIARKMLEIEHGELP---EEVLNFVAENVDDN 298 (440)
T ss_pred HHHHHHHHHhcCCCCC---HHHHHHHHhccccC
Confidence 99998887432 2222 34556666666664
No 178
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=35.34 E-value=27 Score=21.86 Aligned_cols=14 Identities=36% Similarity=0.399 Sum_probs=10.4
Q ss_pred CCceEEEcCCCCcc
Q 005709 337 NYLIELNLPYSKVE 350 (681)
Q Consensus 337 ~~L~~L~L~~n~l~ 350 (681)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46778888888775
No 179
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.12 E-value=2.6e+02 Score=31.51 Aligned_cols=95 Identities=16% Similarity=0.030 Sum_probs=54.9
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCCc-hhhhccC-CceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRDK-RLLDKRR-VENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~~-~~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
++.-++|+|+|+.. ...|...+..-.+..++|.+|-+. .+...+. -...+++++++.++-.+.+.+.+-.....
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~ 197 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE 197 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 45557899999875 444444444334567677665443 4433221 12478899999988776655554322211
Q ss_pred ChhHHHHHHHHHHHcCCChhHHH
Q 005709 96 SPDLLELSEEVAHYANGNPLALQ 118 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPLai~ 118 (681)
.+ ......|++.++|-+--+.
T Consensus 198 ~~--~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 198 FE--NAALDLLARAANGSVRDAL 218 (509)
T ss_pred CC--HHHHHHHHHHcCCcHHHHH
Confidence 11 2334677888888775443
No 180
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=35.10 E-value=0.51 Score=52.34 Aligned_cols=72 Identities=19% Similarity=0.174 Sum_probs=41.8
Q ss_pred HHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCC-----CCCCC-CCCCceEEEcCCCC
Q 005709 275 PQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKT-----LPFSF-EPNYLIELNLPYSK 348 (681)
Q Consensus 275 ~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~-----lp~~~-~l~~L~~L~L~~n~ 348 (681)
..++..+..|..|++++|... ..+...+-.++......|++|++..|.++. +...+ ....|++|+++.|.
T Consensus 108 ~~~l~t~~~L~~L~l~~n~l~----~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~ 183 (478)
T KOG4308|consen 108 AQALKTLPTLGQLDLSGNNLG----DEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNG 183 (478)
T ss_pred HHHhcccccHhHhhcccCCCc----cHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcc
Confidence 456677788888888887751 111112222333323567777777777654 22223 45667777777776
Q ss_pred cc
Q 005709 349 VE 350 (681)
Q Consensus 349 l~ 350 (681)
+.
T Consensus 184 l~ 185 (478)
T KOG4308|consen 184 LI 185 (478)
T ss_pred cc
Confidence 64
No 181
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=34.10 E-value=6.5 Score=43.49 Aligned_cols=105 Identities=26% Similarity=0.344 Sum_probs=72.1
Q ss_pred CCCCCCcEEEcc-cCCCcc--cCccccCCCccceeccccc-cccCcCCC-------CCCCCCEEeccCCCCCccc-----
Q 005709 380 SEIPNLERINLS-GSELER--LPATIKQFSQLRYLYLRNC-NMLQSLPE-------LPLLLSHLDASNCKRLQSL----- 443 (681)
Q Consensus 380 ~~l~~L~~L~L~-~n~l~~--lp~~i~~L~~L~~L~L~~c-~~l~~lp~-------~l~~L~~L~l~~c~~l~~l----- 443 (681)
...++|+.|.+. +..+.. +-+.....++|+.|++++| ......+. ...+|+.|++++|..+...
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 347889999988 667775 4455778899999999983 33333331 1678999999998653321
Q ss_pred CCCCCCccEEeccccc-ccc--cccccccCCCCCcEEEccCCccc
Q 005709 444 PEISSCLEELDISILE-KLS--KTTFPIKHGCSLMQFEFQNCWEL 485 (681)
Q Consensus 444 p~~~~~L~~L~l~~n~-l~~--~~~~~l~~l~~L~~L~l~~c~~L 485 (681)
-....+|+.|.+.+|. ++. +..- ...+++|++|+++.|..+
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i-~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSI-AERCPSLRELDLSGCHGL 308 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHH-HHhcCcccEEeeecCccc
Confidence 1122389999987776 432 2222 456788999999999877
No 182
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.28 E-value=2.6e+02 Score=32.35 Aligned_cols=97 Identities=16% Similarity=0.145 Sum_probs=58.2
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCCc-hhhhccC-CceEEEcCCCCHHHHHHHHHHHhccCC-C
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRDK-RLLDKRR-VENVYEVKGLKHNSALELFCRKAFRQN-N 94 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~~-~~~~~~l~~L~~~e~~~Lf~~~af~~~-~ 94 (681)
+++-++|+|+++.. ...|...+..-.....+|.+|.+. .+...+. -...+++..++.++..+.+.+.+-+.. .
T Consensus 120 ~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~ 199 (620)
T PRK14948 120 ARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE 199 (620)
T ss_pred CCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 45558899999865 445544444333445555555443 4443331 234788889999888877776654322 1
Q ss_pred CChhHHHHHHHHHHHcCCChhHHHHHH
Q 005709 95 RSPDLLELSEEVAHYANGNPLALQVLG 121 (681)
Q Consensus 95 ~~~~~~~~~~~i~~~c~GlPLai~~~g 121 (681)
.. .+.+..+++.++|.+..+..+-
T Consensus 200 is---~~al~~La~~s~G~lr~A~~lL 223 (620)
T PRK14948 200 IE---PEALTLVAQRSQGGLRDAESLL 223 (620)
T ss_pred CC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 11 2346788889999876554443
No 183
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=30.14 E-value=3e+02 Score=28.43 Aligned_cols=65 Identities=17% Similarity=0.264 Sum_probs=38.2
Q ss_pred CeEEEEEECcChh-----HHHhhcCCCCCCCCcEEEEEeCCchhh-hcc-CCceEEEcCCCCHHHHHHHHHH
Q 005709 23 RKVLIVLDDVDDN-----SKNFAGGLELFSPGSRIIITTRDKRLL-DKR-RVENVYEVKGLKHNSALELFCR 87 (681)
Q Consensus 23 kr~LiVLDdv~~~-----~~~l~~~~~~~~~gSrIivTTR~~~v~-~~~-~~~~~~~l~~L~~~e~~~Lf~~ 87 (681)
.+-+||+||++.. .+.+...+.....+.++|+||.....+ ... .-...+.++..+.++..+++..
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHH
Confidence 4557889999744 222333233345678899998754322 111 1123677778888887776554
No 184
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=28.66 E-value=59 Score=30.89 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=31.3
Q ss_pred hHHHHHHhCCCe-EEEEEECcChh-------HHHhhcCCCCCCCCcEEEEEeCCc
Q 005709 13 TPNIKKRLQQRK-VLIVLDDVDDN-------SKNFAGGLELFSPGSRIIITTRDK 59 (681)
Q Consensus 13 ~~~i~~~L~~kr-~LiVLDdv~~~-------~~~l~~~~~~~~~gSrIivTTR~~ 59 (681)
-+..++.+.... =|||||.+-.. .+.+...+....++--||+|-|+.
T Consensus 104 ~~~a~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~ 158 (178)
T PRK07414 104 WQYTQAVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEM 158 (178)
T ss_pred HHHHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCC
Confidence 355666775554 59999998655 344444444445677899999975
No 185
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=28.57 E-value=3.5e+02 Score=27.97 Aligned_cols=64 Identities=13% Similarity=0.258 Sum_probs=38.9
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCCc-hhhhccCC-ceEEEcCCCCHHHHHHHHH
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRDK-RLLDKRRV-ENVYEVKGLKHNSALELFC 86 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~~~-~~~~~l~~L~~~e~~~Lf~ 86 (681)
+++=.+|+||++.. ...|...+..-.+++.+|.+|.+. .++..+.+ ...+.+.+ +.++..+.+.
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHH
Confidence 45567899999876 444555444445667777777655 56665532 23566655 5555555554
No 186
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=28.46 E-value=60 Score=31.22 Aligned_cols=47 Identities=21% Similarity=0.266 Sum_probs=31.4
Q ss_pred hHHHHHHhCCCeE-EEEEECcChh-------HHHhhcCCCCCCCCcEEEEEeCCc
Q 005709 13 TPNIKKRLQQRKV-LIVLDDVDDN-------SKNFAGGLELFSPGSRIIITTRDK 59 (681)
Q Consensus 13 ~~~i~~~L~~kr~-LiVLDdv~~~-------~~~l~~~~~~~~~gSrIivTTR~~ 59 (681)
-+..++.+...+| |+|||.+-.. .+.+...+....++.-||+|-|+.
T Consensus 104 ~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 104 WEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 3455666755554 9999998655 344444444445677899999976
No 187
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=27.52 E-value=1.1e+02 Score=26.73 Aligned_cols=41 Identities=15% Similarity=0.163 Sum_probs=25.8
Q ss_pred hCCCeEEEEEECcChh-------HHHhhcCCCCC---CCCcEEEEEeCCch
Q 005709 20 LQQRKVLIVLDDVDDN-------SKNFAGGLELF---SPGSRIIITTRDKR 60 (681)
Q Consensus 20 L~~kr~LiVLDdv~~~-------~~~l~~~~~~~---~~gSrIivTTR~~~ 60 (681)
...+..+||+||++.. +..+....... ..+.+||+||....
T Consensus 81 ~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 81 EKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 3456789999999842 33333333221 36778888888654
No 188
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=26.72 E-value=3.2e+02 Score=29.64 Aligned_cols=70 Identities=16% Similarity=0.207 Sum_probs=45.5
Q ss_pred CCCeEEEEEECcChh------------------HHHhhcCCCC--CCCCcEEEEEeCCchhhhcc-----CCceEEEcCC
Q 005709 21 QQRKVLIVLDDVDDN------------------SKNFAGGLEL--FSPGSRIIITTRDKRLLDKR-----RVENVYEVKG 75 (681)
Q Consensus 21 ~~kr~LiVLDdv~~~------------------~~~l~~~~~~--~~~gSrIivTTR~~~v~~~~-----~~~~~~~l~~ 75 (681)
.....+|++|+++.. +..+...++. ...+-+||.||...+.+... ..+..++++.
T Consensus 236 ~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~ 315 (398)
T PTZ00454 236 ENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPL 315 (398)
T ss_pred hcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCC
Confidence 456789999997632 2223322322 12356788888866554321 3466899999
Q ss_pred CCHHHHHHHHHHHhc
Q 005709 76 LKHNSALELFCRKAF 90 (681)
Q Consensus 76 L~~~e~~~Lf~~~af 90 (681)
.+.++-.++|..+.-
T Consensus 316 P~~~~R~~Il~~~~~ 330 (398)
T PTZ00454 316 PDRRQKRLIFQTITS 330 (398)
T ss_pred cCHHHHHHHHHHHHh
Confidence 999999889887653
No 189
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.44 E-value=3.1e+02 Score=31.45 Aligned_cols=92 Identities=15% Similarity=0.118 Sum_probs=56.6
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEe-CCchhhhccC-CceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITT-RDKRLLDKRR-VENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTT-R~~~v~~~~~-~~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
+++-++|+|++... .+.|...+..-.....+|.+| ....+...+. -...+++.+++.++..+.+.+.+-+....
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~ 196 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV 196 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 45558899999755 455554444444566655555 4445544331 13589999999999888887765432221
Q ss_pred ChhHHHHHHHHHHHcCCChh
Q 005709 96 SPDLLELSEEVAHYANGNPL 115 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPL 115 (681)
.+ .+....|++.++|-+-
T Consensus 197 i~--~~al~~Ia~~s~GdlR 214 (584)
T PRK14952 197 VD--DAVYPLVIRAGGGSPR 214 (584)
T ss_pred CC--HHHHHHHHHHcCCCHH
Confidence 11 2345667888888764
No 190
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=26.18 E-value=2.3e+02 Score=32.49 Aligned_cols=89 Identities=16% Similarity=0.107 Sum_probs=53.7
Q ss_pred eEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEe-CCchhhhcc-CCceEEEcCCCCHHHHHHHHHHHhccCC-CCC
Q 005709 24 KVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITT-RDKRLLDKR-RVENVYEVKGLKHNSALELFCRKAFRQN-NRS 96 (681)
Q Consensus 24 r~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTT-R~~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~af~~~-~~~ 96 (681)
+=++|+|+++.. +..|...+..-.....+|.+| ....+.... .-...+++.+++.++....+...+-+.. ...
T Consensus 120 ~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is 199 (605)
T PRK05896 120 YKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE 199 (605)
T ss_pred cEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 336999999764 444444333333455565554 443444332 1234789999999999888877664322 111
Q ss_pred hhHHHHHHHHHHHcCCChh
Q 005709 97 PDLLELSEEVAHYANGNPL 115 (681)
Q Consensus 97 ~~~~~~~~~i~~~c~GlPL 115 (681)
.+.+..+++.++|-+-
T Consensus 200 ---~eal~~La~lS~GdlR 215 (605)
T PRK05896 200 ---DNAIDKIADLADGSLR 215 (605)
T ss_pred ---HHHHHHHHHHcCCcHH
Confidence 3346778888988654
No 191
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=26.02 E-value=79 Score=30.26 Aligned_cols=48 Identities=23% Similarity=0.270 Sum_probs=33.7
Q ss_pred chHHHHHHhCCCeE-EEEEECcChh-------HHHhhcCCCCCCCCcEEEEEeCCc
Q 005709 12 ITPNIKKRLQQRKV-LIVLDDVDDN-------SKNFAGGLELFSPGSRIIITTRDK 59 (681)
Q Consensus 12 ~~~~i~~~L~~kr~-LiVLDdv~~~-------~~~l~~~~~~~~~gSrIivTTR~~ 59 (681)
+-+..++.+.+.+| |+|||.+.-. ++.+...+..-....-||+|-|.-
T Consensus 110 ~w~~a~~~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~a 165 (198)
T COG2109 110 GWEHAKEALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGA 165 (198)
T ss_pred HHHHHHHHHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCC
Confidence 34556778877776 9999998544 555555554445778899999875
No 192
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=25.87 E-value=2.7e+02 Score=28.59 Aligned_cols=67 Identities=10% Similarity=0.007 Sum_probs=42.3
Q ss_pred eEEEEEECcCh-----------h--HHHhhcCCCCCCCCcEEEEEeCCchhhhcc--------CCceEEEcCCCCHHHHH
Q 005709 24 KVLIVLDDVDD-----------N--SKNFAGGLELFSPGSRIIITTRDKRLLDKR--------RVENVYEVKGLKHNSAL 82 (681)
Q Consensus 24 r~LiVLDdv~~-----------~--~~~l~~~~~~~~~gSrIivTTR~~~v~~~~--------~~~~~~~l~~L~~~e~~ 82 (681)
.-+|+||++.. . ++.|...+.....+-+||.+|-....-... .....+++++++.+|-.
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~ 201 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELL 201 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHH
Confidence 35888999861 1 444555444444566777776543221111 12457999999999999
Q ss_pred HHHHHHhc
Q 005709 83 ELFCRKAF 90 (681)
Q Consensus 83 ~Lf~~~af 90 (681)
+++...+-
T Consensus 202 ~I~~~~l~ 209 (284)
T TIGR02880 202 VIAGLMLK 209 (284)
T ss_pred HHHHHHHH
Confidence 99888763
No 193
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=25.68 E-value=1.2e+02 Score=33.29 Aligned_cols=71 Identities=15% Similarity=0.286 Sum_probs=46.1
Q ss_pred CCCeEEEEEECcChh------------------HHHhhcCCCCC--CCCcEEEEEeCCchhhhcc-----CCceEEEcCC
Q 005709 21 QQRKVLIVLDDVDDN------------------SKNFAGGLELF--SPGSRIIITTRDKRLLDKR-----RVENVYEVKG 75 (681)
Q Consensus 21 ~~kr~LiVLDdv~~~------------------~~~l~~~~~~~--~~gSrIivTTR~~~v~~~~-----~~~~~~~l~~ 75 (681)
.+...+|+||+++.. +-.+...++.+ ..+-+||.||...+.+... ..+..++++.
T Consensus 274 ~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~ 353 (438)
T PTZ00361 274 ENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPN 353 (438)
T ss_pred hCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCC
Confidence 356789999997532 11122222211 2356788888866554331 2466899999
Q ss_pred CCHHHHHHHHHHHhcc
Q 005709 76 LKHNSALELFCRKAFR 91 (681)
Q Consensus 76 L~~~e~~~Lf~~~af~ 91 (681)
.+.++-.++|..++-+
T Consensus 354 Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 354 PDEKTKRRIFEIHTSK 369 (438)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999988643
No 194
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=25.16 E-value=5e+02 Score=27.83 Aligned_cols=149 Identities=16% Similarity=0.252 Sum_probs=79.7
Q ss_pred chHHHHHHhC--CCeEEEEEECcChh-------HHHhhcCCCCCCCCcEEEEEe--CCchhhhc--------cCCceEEE
Q 005709 12 ITPNIKKRLQ--QRKVLIVLDDVDDN-------SKNFAGGLELFSPGSRIIITT--RDKRLLDK--------RRVENVYE 72 (681)
Q Consensus 12 ~~~~i~~~L~--~kr~LiVLDdv~~~-------~~~l~~~~~~~~~gSrIivTT--R~~~v~~~--------~~~~~~~~ 72 (681)
.-+.+.+.+. ++.++||||+++.. +-.|....... +++|++.. -+-..... .+.. .+.
T Consensus 110 ~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~-~I~ 186 (366)
T COG1474 110 ILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDYLDPRVKSSLGPS-EIV 186 (366)
T ss_pred HHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccHHHHHHhhhhhhhccCcc-eee
Confidence 4455666664 58899999999876 22333333222 55554433 33322222 2222 367
Q ss_pred cCCCCHHHHHHHHHHHh---ccCCCCChhHHHHHHHHHHHcCC-ChhHHHHHHhh--hcC------CCHHHHHHHHHHhh
Q 005709 73 VKGLKHNSALELFCRKA---FRQNNRSPDLLELSEEVAHYANG-NPLALQVLGSS--LYQ------KSKEQWKDKLRKLK 140 (681)
Q Consensus 73 l~~L~~~e~~~Lf~~~a---f~~~~~~~~~~~~~~~i~~~c~G-lPLai~~~g~~--L~~------k~~~~w~~~l~~l~ 140 (681)
.++-+.+|-.+++...+ |......++.-+++..++.+-+| .-.||..+-.. ++. -+.+.-..+....+
T Consensus 187 F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~~ 266 (366)
T COG1474 187 FPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEIE 266 (366)
T ss_pred eCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHhh
Confidence 88889999999998875 55555555555555555555554 44454444332 221 12232233222111
Q ss_pred hcCChhHHHHHHHHhcCCCHHHHHHHhhhc
Q 005709 141 LITDPNIYKVLKISYDGLNWEEKEIFLDVA 170 (681)
Q Consensus 141 ~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a 170 (681)
.....-....||.+.|-...-++
T Consensus 267 -------~~~~~~~~~~L~~~~ki~L~~i~ 289 (366)
T COG1474 267 -------RDVLEEVLKTLPLHQKIVLLAIV 289 (366)
T ss_pred -------HHHHHHHHHcCCHhHHHHHHHHH
Confidence 12333346788888776654443
No 195
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=25.10 E-value=63 Score=30.57 Aligned_cols=48 Identities=21% Similarity=0.264 Sum_probs=31.4
Q ss_pred chHHHHHHhCCCeE-EEEEECcChh-------HHHhhcCCCCCCCCcEEEEEeCCc
Q 005709 12 ITPNIKKRLQQRKV-LIVLDDVDDN-------SKNFAGGLELFSPGSRIIITTRDK 59 (681)
Q Consensus 12 ~~~~i~~~L~~kr~-LiVLDdv~~~-------~~~l~~~~~~~~~gSrIivTTR~~ 59 (681)
+-+..++.+...+| |+|||.+-.. .+.+...+....++--||+|-|..
T Consensus 85 ~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 85 AWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 34456666766555 9999998654 333333333334677899999987
No 196
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=24.93 E-value=2.8e+02 Score=30.17 Aligned_cols=67 Identities=22% Similarity=0.359 Sum_probs=43.7
Q ss_pred EEEEEECcChh-----HHH-hhcCCC-CCCCCcEEEEEeCC---------chhhhccCCceEEEcCCCCHHHHHHHHHHH
Q 005709 25 VLIVLDDVDDN-----SKN-FAGGLE-LFSPGSRIIITTRD---------KRLLDKRRVENVYEVKGLKHNSALELFCRK 88 (681)
Q Consensus 25 ~LiVLDdv~~~-----~~~-l~~~~~-~~~~gSrIivTTR~---------~~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~ 88 (681)
=++++||++.. |+. +.-.+. ....|-.||+|++. .++....+..-++++.+++.+.-..++.++
T Consensus 177 dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kk 256 (408)
T COG0593 177 DLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKK 256 (408)
T ss_pred CeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHH
Confidence 38889999764 221 211111 11234489999853 233444556779999999999999999997
Q ss_pred hcc
Q 005709 89 AFR 91 (681)
Q Consensus 89 af~ 91 (681)
+-.
T Consensus 257 a~~ 259 (408)
T COG0593 257 AED 259 (408)
T ss_pred HHh
Confidence 643
No 197
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.42 E-value=2.2e+02 Score=32.62 Aligned_cols=91 Identities=14% Similarity=0.095 Sum_probs=52.1
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEE-EeCCchhhhccC-CceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIII-TTRDKRLLDKRR-VENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIiv-TTR~~~v~~~~~-~~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
+++=++|+|+|+.. ...|...+..-.....+|. ||....+...+. -...+++++++.++..+.+...+-.....
T Consensus 118 ~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~ 197 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS 197 (576)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 34457889999765 4444443333335566655 444445554332 13478889999988877776654322211
Q ss_pred ChhHHHHHHHHHHHcCCCh
Q 005709 96 SPDLLELSEEVAHYANGNP 114 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlP 114 (681)
- -.+....+++.++|-.
T Consensus 198 i--~~~al~~la~~a~G~l 214 (576)
T PRK14965 198 I--SDAALALVARKGDGSM 214 (576)
T ss_pred C--CHHHHHHHHHHcCCCH
Confidence 1 1234566778888754
No 198
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=24.07 E-value=1.4e+02 Score=20.87 Aligned_cols=13 Identities=23% Similarity=0.455 Sum_probs=7.6
Q ss_pred ccccCccEEEecC
Q 005709 312 YLPKKLRYLHWHE 324 (681)
Q Consensus 312 ~l~~~L~~L~l~~ 324 (681)
.+|+++++|.+..
T Consensus 9 ~iP~~l~~L~~g~ 21 (44)
T PF05725_consen 9 SIPSSLKSLIFGS 21 (44)
T ss_pred eeCCCCeEEEECC
Confidence 3456666777633
No 199
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=23.94 E-value=2.8e+02 Score=30.70 Aligned_cols=67 Identities=16% Similarity=0.225 Sum_probs=40.7
Q ss_pred EEEEEECcChh------HHHhhcCCCC-CCCCcEEEEEeCCc---------hhhhccCCceEEEcCCCCHHHHHHHHHHH
Q 005709 25 VLIVLDDVDDN------SKNFAGGLEL-FSPGSRIIITTRDK---------RLLDKRRVENVYEVKGLKHNSALELFCRK 88 (681)
Q Consensus 25 ~LiVLDdv~~~------~~~l~~~~~~-~~~gSrIivTTR~~---------~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~ 88 (681)
-++++||+... -+.+...+.. ...|-.||+||... ++...+....++++++++.++-.+++.++
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k 283 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERK 283 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHH
Confidence 47888998653 1122211110 11355788888542 22333344568999999999999999888
Q ss_pred hcc
Q 005709 89 AFR 91 (681)
Q Consensus 89 af~ 91 (681)
+-.
T Consensus 284 ~~~ 286 (445)
T PRK12422 284 AEA 286 (445)
T ss_pred HHH
Confidence 743
No 200
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=23.87 E-value=4.6e+02 Score=29.96 Aligned_cols=95 Identities=13% Similarity=0.045 Sum_probs=55.6
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEe-CCchhhhccC-CceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITT-RDKRLLDKRR-VENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTT-R~~~v~~~~~-~~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
+++-++|+|+++.. +..|...+..-.....+|++| ....+...+. -...++..+++.++..+.+...+-+....
T Consensus 118 ~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~ 197 (559)
T PRK05563 118 AKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIE 197 (559)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCC
Confidence 45667899999755 445554444323444555444 4444443321 13478899999999888887766432211
Q ss_pred ChhHHHHHHHHHHHcCCChhHHH
Q 005709 96 SPDLLELSEEVAHYANGNPLALQ 118 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPLai~ 118 (681)
.+ .+.+..+++.++|-+..+.
T Consensus 198 i~--~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 198 YE--DEALRLIARAAEGGMRDAL 218 (559)
T ss_pred CC--HHHHHHHHHHcCCCHHHHH
Confidence 11 2445677778888665433
No 201
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=22.86 E-value=58 Score=31.00 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=20.0
Q ss_pred HhCCCeEEEEEECcChh---HHHhhcCCCCCCCCc
Q 005709 19 RLQQRKVLIVLDDVDDN---SKNFAGGLELFSPGS 50 (681)
Q Consensus 19 ~L~~kr~LiVLDdv~~~---~~~l~~~~~~~~~gS 50 (681)
.+++|++||| |||-+. +......+...|..+
T Consensus 94 ~v~gk~VLIV-DDIidTG~Tl~~~~~~Lk~~Ga~~ 127 (181)
T PRK09162 94 SLKGRTVLVV-DDILDEGHTLAAIRDRCLEMGAAE 127 (181)
T ss_pred CCCCCEEEEE-ccccCcHHHHHHHHHHHHhCCCCE
Confidence 4667777666 999887 555555555445544
No 202
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=22.54 E-value=70 Score=29.79 Aligned_cols=55 Identities=20% Similarity=0.278 Sum_probs=30.7
Q ss_pred CeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCCch-hhhccCC-ceEEEcCCCC
Q 005709 23 RKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRDKR-LLDKRRV-ENVYEVKGLK 77 (681)
Q Consensus 23 kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~~~-v~~~~~~-~~~~~l~~L~ 77 (681)
++=.+|+||++.. ..+|...+..-..++++|++|++.+ ++..+.. ...+.+++++
T Consensus 102 ~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 102 KYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp SSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE----
T ss_pred CceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecCCCC
Confidence 4557999999875 4444444444457899999998774 4444322 2356666553
No 203
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=22.45 E-value=1.9e+02 Score=32.56 Aligned_cols=68 Identities=15% Similarity=0.295 Sum_probs=45.0
Q ss_pred CCeEEEEEECcChh----------------HHHhhcCCCCCC--CCcEEEEEeCCchhhhcc-----CCceEEEcCCCCH
Q 005709 22 QRKVLIVLDDVDDN----------------SKNFAGGLELFS--PGSRIIITTRDKRLLDKR-----RVENVYEVKGLKH 78 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----------------~~~l~~~~~~~~--~gSrIivTTR~~~v~~~~-----~~~~~~~l~~L~~ 78 (681)
+++++|++|+++.. +..+...++... .+..||.||-..+.++.. ..+..++++.++.
T Consensus 288 g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~ 367 (512)
T TIGR03689 288 GRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDA 367 (512)
T ss_pred CCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCH
Confidence 46899999999743 123333333222 344566677655544321 3466899999999
Q ss_pred HHHHHHHHHHh
Q 005709 79 NSALELFCRKA 89 (681)
Q Consensus 79 ~e~~~Lf~~~a 89 (681)
++..++|..+.
T Consensus 368 e~r~~Il~~~l 378 (512)
T TIGR03689 368 EAAADIFSKYL 378 (512)
T ss_pred HHHHHHHHHHh
Confidence 99999999886
No 204
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=22.31 E-value=69 Score=30.27 Aligned_cols=48 Identities=17% Similarity=0.262 Sum_probs=27.3
Q ss_pred chHHHHHHhCCCeE-EEEEECcChh-------HHHhhcCCCCCCCCcEEEEEeCCc
Q 005709 12 ITPNIKKRLQQRKV-LIVLDDVDDN-------SKNFAGGLELFSPGSRIIITTRDK 59 (681)
Q Consensus 12 ~~~~i~~~L~~kr~-LiVLDdv~~~-------~~~l~~~~~~~~~gSrIivTTR~~ 59 (681)
+-+..++.+...+| |||||.+-.. .+.+...+....++.-||+|-|..
T Consensus 84 ~~~~a~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~ 139 (172)
T PF02572_consen 84 GLEEAKEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNA 139 (172)
T ss_dssp HHHHHHHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS-
T ss_pred HHHHHHHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCC
Confidence 34556677765554 9999998654 333333333335788899999987
No 205
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=21.76 E-value=5.3e+02 Score=26.59 Aligned_cols=74 Identities=16% Similarity=0.249 Sum_probs=45.2
Q ss_pred hHHHHHHhC--CCeEEEEEECcChh--------HHHhhcCCCCCCCCcEEEEEeCCchhhhccC----------------
Q 005709 13 TPNIKKRLQ--QRKVLIVLDDVDDN--------SKNFAGGLELFSPGSRIIITTRDKRLLDKRR---------------- 66 (681)
Q Consensus 13 ~~~i~~~L~--~kr~LiVLDdv~~~--------~~~l~~~~~~~~~gSrIivTTR~~~v~~~~~---------------- 66 (681)
.+.+.+.|. ++|.+||+||++.- |+.+..-++ .++..+|+..-.+.|.....
T Consensus 160 ~~~~~~~l~~~~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~--~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yL 237 (325)
T PF07693_consen 160 ISKIKKKLKESKKRIVIIIDDLDRCSPEEIVELLEAIKLLLD--FPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYL 237 (325)
T ss_pred HHHHHHhhhcCCceEEEEEcchhcCCcHHHHHHHHHHHHhcC--CCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHH
Confidence 445555553 58999999999873 444444333 26666666665554443221
Q ss_pred ---CceEEEcCCCCHHHHHHHHHHH
Q 005709 67 ---VENVYEVKGLKHNSALELFCRK 88 (681)
Q Consensus 67 ---~~~~~~l~~L~~~e~~~Lf~~~ 88 (681)
++..+.+++++..+-.++|...
T Consensus 238 eKiiq~~~~lP~~~~~~~~~~~~~~ 262 (325)
T PF07693_consen 238 EKIIQVPFSLPPPSPSDLERYLNEL 262 (325)
T ss_pred HhhcCeEEEeCCCCHHHHHHHHHHH
Confidence 2347788888877665555554
No 206
>PRK10536 hypothetical protein; Provisional
Probab=21.65 E-value=71 Score=32.35 Aligned_cols=41 Identities=12% Similarity=0.238 Sum_probs=27.9
Q ss_pred HhCCCeE---EEEEECcChh-HHHhhcCCCCCCCCcEEEEEeCCc
Q 005709 19 RLQQRKV---LIVLDDVDDN-SKNFAGGLELFSPGSRIIITTRDK 59 (681)
Q Consensus 19 ~L~~kr~---LiVLDdv~~~-~~~l~~~~~~~~~gSrIivTTR~~ 59 (681)
.++|..+ +||+|.+.+. ...+...+...|.+|+||+|--..
T Consensus 169 ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~g~~sk~v~~GD~~ 213 (262)
T PRK10536 169 YMRGRTFENAVVILDEAQNVTAAQMKMFLTRLGENVTVIVNGDIT 213 (262)
T ss_pred HhcCCcccCCEEEEechhcCCHHHHHHHHhhcCCCCEEEEeCChh
Confidence 5666665 9999999887 333333333457999999987543
No 207
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=21.37 E-value=64 Score=31.47 Aligned_cols=38 Identities=26% Similarity=0.396 Sum_probs=21.7
Q ss_pred HhCCCe---EEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCCc
Q 005709 19 RLQQRK---VLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRDK 59 (681)
Q Consensus 19 ~L~~kr---~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~~ 59 (681)
.++|+. -+||+|++.+. +..+... .|.|||||++--..
T Consensus 112 ~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~~ 156 (205)
T PF02562_consen 112 FIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDPS 156 (205)
T ss_dssp GGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE---
T ss_pred hhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCce
Confidence 345544 58999999988 5555544 58999999997554
No 208
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=20.90 E-value=2.5e+02 Score=29.48 Aligned_cols=59 Identities=15% Similarity=0.235 Sum_probs=35.4
Q ss_pred CCcEEEEEeCCc-hhhhccC-CceEEEcCCCCHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHcCCChhH
Q 005709 48 PGSRIIITTRDK-RLLDKRR-VENVYEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLA 116 (681)
Q Consensus 48 ~gSrIivTTR~~-~v~~~~~-~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPLa 116 (681)
.+..+|++|.+. .+...+. -...+.+.+++.+++.+.+.... .. ... ..+..++|-|+.
T Consensus 142 ~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~~-~~~-----~~l~~~~g~p~~ 202 (325)
T PRK08699 142 PQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG----VA-EPE-----ERLAFHSGAPLF 202 (325)
T ss_pred CCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC----CC-cHH-----HHHHHhCCChhh
Confidence 456577777765 4554332 13478999999999887776531 11 111 123568898864
Done!