Query 005709
Match_columns 681
No_of_seqs 567 out of 4532
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 05:14:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005709.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005709hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 4.8E-31 1.7E-35 297.1 15.4 211 12-230 231-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.9 1.5E-25 5.1E-30 276.8 16.7 206 12-228 223-452 (1249)
3 1vt4_I APAF-1 related killer D 99.9 4.1E-25 1.4E-29 253.3 10.8 187 12-221 230-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 99.9 4.1E-23 1.4E-27 235.2 14.9 201 12-224 223-448 (591)
5 4fcg_A Uncharacterized protein 99.9 9.3E-22 3.2E-26 207.0 19.5 189 281-483 80-288 (328)
6 4fcg_A Uncharacterized protein 99.9 3E-21 1E-25 203.1 17.2 215 256-483 81-312 (328)
7 2id5_A Lingo-1, leucine rich r 99.8 4.2E-21 1.4E-25 212.7 13.2 208 263-483 37-259 (477)
8 1ogq_A PGIP-2, polygalacturona 99.8 3.4E-20 1.2E-24 193.8 15.2 216 256-484 50-280 (313)
9 3rgz_A Protein brassinosteroid 99.8 1.1E-20 3.7E-25 221.7 12.1 200 273-483 334-549 (768)
10 4eco_A Uncharacterized protein 99.8 4.7E-21 1.6E-25 219.8 6.8 213 256-483 249-499 (636)
11 4eco_A Uncharacterized protein 99.8 2.4E-21 8.1E-26 222.3 4.0 197 274-483 239-468 (636)
12 4ecn_A Leucine-rich repeat pro 99.8 1.2E-20 4E-25 221.3 9.5 213 256-483 491-739 (876)
13 3zyj_A Leucine-rich repeat-con 99.8 3.3E-19 1.1E-23 195.4 20.5 207 263-484 69-291 (440)
14 3zyi_A Leucine-rich repeat-con 99.8 2.8E-19 9.6E-24 196.6 19.9 212 257-484 76-302 (452)
15 3rgz_A Protein brassinosteroid 99.8 8.4E-20 2.9E-24 214.1 16.2 208 264-483 400-691 (768)
16 4ecn_A Leucine-rich repeat pro 99.8 1.2E-20 4E-25 221.3 6.5 216 255-483 447-708 (876)
17 3v47_A TOLL-like receptor 5B a 99.8 6.8E-20 2.3E-24 201.5 11.2 214 256-483 30-334 (455)
18 2id5_A Lingo-1, leucine rich r 99.8 2.4E-19 8.3E-24 198.5 15.0 212 256-483 56-283 (477)
19 1ogq_A PGIP-2, polygalacturona 99.8 6.4E-20 2.2E-24 191.7 9.2 215 256-485 76-304 (313)
20 3o6n_A APL1; leucine-rich repe 99.8 8.8E-19 3E-23 188.8 18.0 209 257-483 46-306 (390)
21 3oja_B Anopheles plasmodium-re 99.8 8.1E-19 2.8E-23 199.9 18.5 205 264-484 57-313 (597)
22 2z80_A TOLL-like receptor 2, v 99.8 1.3E-19 4.5E-24 192.6 10.4 211 257-483 53-312 (353)
23 2z66_A Variable lymphocyte rec 99.8 5.3E-19 1.8E-23 183.9 14.3 215 256-484 28-260 (306)
24 3t6q_A CD180 antigen; protein- 99.8 5.9E-19 2E-23 201.3 14.7 118 365-483 256-387 (606)
25 1ozn_A Reticulon 4 receptor; N 99.8 4.3E-18 1.5E-22 175.2 19.1 191 281-484 31-237 (285)
26 2z7x_B TOLL-like receptor 1, v 99.8 8.5E-19 2.9E-23 196.3 14.7 210 257-483 22-385 (520)
27 1xku_A Decorin; proteoglycan, 99.8 4.1E-18 1.4E-22 179.2 18.7 204 263-484 57-275 (330)
28 2ft3_A Biglycan; proteoglycan, 99.8 3.5E-18 1.2E-22 179.9 18.0 208 257-485 55-277 (332)
29 3zyi_A Leucine-rich repeat-con 99.8 4.3E-18 1.5E-22 187.2 18.9 189 282-483 75-277 (452)
30 3o53_A Protein LRIM1, AGAP0063 99.8 1.4E-18 4.7E-23 181.9 13.7 224 257-508 35-269 (317)
31 3zyj_A Leucine-rich repeat-con 99.8 5.5E-18 1.9E-22 185.7 18.5 188 282-483 64-266 (440)
32 3vq2_A TLR4, TOLL-like recepto 99.8 1.3E-18 4.5E-23 198.5 13.8 123 264-398 38-168 (606)
33 3t6q_A CD180 antigen; protein- 99.8 3E-18 1E-22 195.5 16.4 144 262-417 37-190 (606)
34 3g06_A SSPH2 (leucine-rich rep 99.8 2.2E-17 7.6E-22 187.3 23.3 59 280-353 79-137 (622)
35 1p9a_G Platelet glycoprotein I 99.8 7.4E-18 2.5E-22 173.9 17.7 188 278-484 6-207 (290)
36 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.9E-18 6.6E-23 195.3 14.2 124 256-395 52-181 (562)
37 3oja_A Leucine-rich immune mol 99.8 1.7E-18 5.9E-23 191.9 13.0 223 257-507 35-268 (487)
38 1xku_A Decorin; proteoglycan, 99.8 1.2E-17 4E-22 175.7 18.8 188 282-485 52-253 (330)
39 4fmz_A Internalin; leucine ric 99.8 1.4E-17 4.8E-22 176.2 19.3 161 315-483 110-276 (347)
40 3vq2_A TLR4, TOLL-like recepto 99.8 1.7E-18 6E-23 197.4 12.1 95 264-370 62-160 (606)
41 2z66_A Variable lymphocyte rec 99.8 4.7E-18 1.6E-22 176.7 14.3 189 282-483 28-234 (306)
42 3o6n_A APL1; leucine-rich repe 99.8 1.8E-17 6.1E-22 178.5 19.2 203 265-483 76-329 (390)
43 2z62_A TOLL-like receptor 4, v 99.8 1E-17 3.4E-22 171.5 16.4 189 282-484 28-236 (276)
44 2ft3_A Biglycan; proteoglycan, 99.8 2.6E-17 8.8E-22 173.2 19.8 208 256-485 78-307 (332)
45 2o6q_A Variable lymphocyte rec 99.7 4.2E-17 1.4E-21 166.4 20.3 185 282-483 16-216 (270)
46 3oja_B Anopheles plasmodium-re 99.7 1.7E-17 5.8E-22 188.9 18.4 206 263-483 80-335 (597)
47 3v47_A TOLL-like receptor 5B a 99.7 1.9E-17 6.3E-22 182.0 18.0 99 383-483 275-382 (455)
48 2z81_A CD282 antigen, TOLL-lik 99.7 1.4E-18 4.6E-23 195.9 9.0 145 257-415 27-181 (549)
49 1ziw_A TOLL-like receptor 3; i 99.7 9.6E-18 3.3E-22 194.0 15.7 213 256-483 25-283 (680)
50 1jl5_A Outer protein YOPM; leu 99.7 3.2E-17 1.1E-21 180.0 18.4 177 257-462 132-311 (454)
51 4fmz_A Internalin; leucine ric 99.7 2.1E-17 7.1E-22 174.9 15.9 206 256-483 88-322 (347)
52 3rfs_A Internalin B, repeat mo 99.7 3.5E-17 1.2E-21 167.2 16.7 200 279-535 38-246 (272)
53 1wwl_A Monocyte differentiatio 99.7 6.6E-18 2.3E-22 176.2 11.6 190 279-483 92-307 (312)
54 1h6u_A Internalin H; cell adhe 99.7 1.4E-17 4.7E-22 173.5 13.8 185 278-483 37-228 (308)
55 1o6v_A Internalin A; bacterial 99.7 2.7E-17 9.1E-22 181.6 16.3 185 278-482 86-275 (466)
56 3j0a_A TOLL-like receptor 5; m 99.7 8.4E-18 2.9E-22 199.2 12.7 155 255-423 23-191 (844)
57 2xwt_C Thyrotropin receptor; s 99.7 3.7E-17 1.3E-21 163.5 15.4 187 282-485 31-239 (239)
58 3bz5_A Internalin-J, INLJ; leu 99.7 1.8E-17 6.3E-22 182.1 14.3 180 277-483 59-244 (457)
59 3o53_A Protein LRIM1, AGAP0063 99.7 7.8E-18 2.7E-22 176.1 10.8 199 264-483 16-225 (317)
60 3g06_A SSPH2 (leucine-rich rep 99.7 1.1E-16 3.7E-21 181.6 20.7 199 256-483 81-295 (622)
61 2z7x_B TOLL-like receptor 1, v 99.7 3.8E-17 1.3E-21 182.9 16.6 121 362-483 323-455 (520)
62 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 1E-16 3.5E-21 181.2 19.5 121 362-483 352-484 (562)
63 1ozn_A Reticulon 4 receptor; N 99.7 9.1E-17 3.1E-21 165.2 16.8 191 256-462 32-239 (285)
64 2z63_A TOLL-like receptor 4, v 99.7 1.8E-17 6.1E-22 187.5 11.6 100 382-483 281-384 (570)
65 1o6v_A Internalin A; bacterial 99.7 9.7E-17 3.3E-21 177.1 17.1 225 257-507 47-293 (466)
66 1jl5_A Outer protein YOPM; leu 99.7 3.4E-17 1.2E-21 179.8 12.4 187 274-483 26-248 (454)
67 1p9a_G Platelet glycoprotein I 99.7 1.6E-16 5.3E-21 164.0 16.6 166 282-461 31-208 (290)
68 2z80_A TOLL-like receptor 2, v 99.7 3.3E-17 1.1E-21 174.0 11.6 204 263-483 36-288 (353)
69 3oja_A Leucine-rich immune mol 99.7 4.9E-17 1.7E-21 180.3 13.4 189 275-483 23-225 (487)
70 3bz5_A Internalin-J, INLJ; leu 99.7 3.6E-16 1.2E-20 171.8 18.4 162 310-483 166-350 (457)
71 3j0a_A TOLL-like receptor 5; m 99.7 2.1E-16 7.2E-21 187.2 16.9 209 257-483 267-515 (844)
72 1ziw_A TOLL-like receptor 3; i 99.7 2.9E-16 9.8E-21 181.6 17.2 214 256-483 353-595 (680)
73 4g8a_A TOLL-like receptor 4; l 99.7 1.1E-16 3.7E-21 183.0 13.5 124 262-398 56-188 (635)
74 3cvr_A Invasion plasmid antige 99.7 3.8E-16 1.3E-20 175.1 17.4 172 283-483 60-241 (571)
75 2xwt_C Thyrotropin receptor; s 99.7 3E-16 1E-20 157.0 13.9 185 257-458 32-236 (239)
76 2z63_A TOLL-like receptor 4, v 99.7 2.3E-16 7.9E-21 178.3 13.9 146 335-483 345-505 (570)
77 2o6q_A Variable lymphocyte rec 99.7 1.5E-15 5.1E-20 154.9 18.4 182 263-462 21-219 (270)
78 4glp_A Monocyte differentiatio 99.7 1.4E-16 4.9E-21 165.9 10.9 192 278-484 87-306 (310)
79 1h6u_A Internalin H; cell adhe 99.7 5.9E-16 2E-20 161.1 15.1 188 257-466 42-235 (308)
80 2z62_A TOLL-like receptor 4, v 99.7 5.8E-16 2E-20 158.4 14.1 190 257-462 29-238 (276)
81 2z81_A CD282 antigen, TOLL-lik 99.7 5.8E-16 2E-20 174.3 15.2 186 281-483 309-508 (549)
82 3m19_A Variable lymphocyte rec 99.6 2.7E-15 9.3E-20 151.2 18.1 162 316-483 15-190 (251)
83 4ay9_X Follicle-stimulating ho 99.6 1.5E-15 5E-20 161.1 15.3 209 257-481 31-255 (350)
84 3rfs_A Internalin B, repeat mo 99.6 1.9E-15 6.6E-20 154.2 15.4 195 256-473 41-247 (272)
85 4glp_A Monocyte differentiatio 99.6 7.2E-16 2.5E-20 160.5 10.9 190 257-462 92-308 (310)
86 1wwl_A Monocyte differentiatio 99.6 7.4E-16 2.5E-20 160.6 9.8 191 255-462 94-310 (312)
87 3cvr_A Invasion plasmid antige 99.6 8.1E-15 2.8E-19 164.3 18.8 170 315-503 59-253 (571)
88 1h6t_A Internalin B; cell adhe 99.6 5.1E-15 1.7E-19 152.7 13.6 166 279-483 43-211 (291)
89 1h6t_A Internalin B; cell adhe 99.6 3.7E-15 1.3E-19 153.7 11.7 169 257-465 47-217 (291)
90 3m19_A Variable lymphocyte rec 99.6 3.4E-14 1.1E-18 143.1 16.9 164 283-463 15-194 (251)
91 1m9s_A Internalin B; cell inva 99.6 6E-15 2.1E-19 167.1 11.2 169 279-465 40-214 (605)
92 1m9s_A Internalin B; cell inva 99.5 2.1E-14 7.2E-19 162.6 14.1 166 311-486 40-211 (605)
93 2o6s_A Variable lymphocyte rec 99.5 3.8E-14 1.3E-18 138.4 13.8 151 315-473 28-190 (208)
94 2ca6_A RAN GTPase-activating p 99.5 5.8E-16 2E-20 166.4 0.9 216 257-484 33-315 (386)
95 4ay9_X Follicle-stimulating ho 99.5 3.8E-14 1.3E-18 150.1 14.5 185 282-483 30-234 (350)
96 2ast_B S-phase kinase-associat 99.5 2.5E-15 8.5E-20 158.0 3.3 196 274-482 60-282 (336)
97 2o6s_A Variable lymphocyte rec 99.5 4.4E-14 1.5E-18 137.9 11.4 162 281-460 27-197 (208)
98 4g8a_A TOLL-like receptor 4; l 99.5 7E-14 2.4E-18 159.7 14.8 103 309-415 71-182 (635)
99 4ezg_A Putative uncharacterize 99.5 3.3E-14 1.1E-18 137.6 9.6 143 315-483 44-192 (197)
100 2v9t_B SLIT homolog 2 protein 99.5 2.6E-13 9E-18 133.7 15.9 142 318-484 14-164 (220)
101 1xeu_A Internalin C; cellular 99.5 2.2E-14 7.6E-19 145.6 8.2 161 281-483 18-183 (263)
102 2xot_A Amphoterin-induced prot 99.5 7.5E-14 2.6E-18 148.6 11.9 160 318-483 21-200 (361)
103 3e6j_A Variable lymphocyte rec 99.5 2.8E-13 9.7E-18 134.4 14.9 141 317-483 21-170 (229)
104 1xeu_A Internalin C; cellular 99.5 3.3E-14 1.1E-18 144.3 7.8 127 277-422 36-165 (263)
105 3e6j_A Variable lymphocyte rec 99.5 4.1E-13 1.4E-17 133.2 14.7 121 314-438 39-170 (229)
106 4ezg_A Putative uncharacterize 99.5 1.6E-13 5.3E-18 132.9 11.2 143 279-437 41-191 (197)
107 2v70_A SLIT-2, SLIT homolog 2 99.5 4.6E-13 1.6E-17 132.0 14.5 144 318-483 14-164 (220)
108 3goz_A Leucine-rich repeat-con 99.5 1.1E-14 3.7E-19 155.1 2.7 38 315-352 80-124 (362)
109 2ast_B S-phase kinase-associat 99.5 6.6E-15 2.3E-19 154.8 0.9 187 283-483 48-258 (336)
110 2v9t_B SLIT homolog 2 protein 99.4 8.2E-13 2.8E-17 130.2 13.8 120 314-437 31-162 (220)
111 3goz_A Leucine-rich repeat-con 99.4 7.2E-14 2.5E-18 148.7 5.8 226 263-494 3-298 (362)
112 2ca6_A RAN GTPase-activating p 99.4 3.4E-14 1.2E-18 152.6 3.0 200 274-483 24-285 (386)
113 1dce_A Protein (RAB geranylger 99.4 1.4E-15 4.7E-20 171.2 -8.6 158 315-483 349-544 (567)
114 4b8c_D Glucose-repressible alc 99.4 5E-14 1.7E-18 163.4 3.9 145 307-458 217-369 (727)
115 2v70_A SLIT-2, SLIT homolog 2 99.4 1.2E-12 4.1E-17 129.0 13.1 137 285-437 14-163 (220)
116 4b8c_D Glucose-repressible alc 99.4 2.6E-14 8.7E-19 165.8 0.8 149 273-437 215-369 (727)
117 2xot_A Amphoterin-induced prot 99.4 6.6E-13 2.3E-17 141.2 11.4 160 285-461 21-202 (361)
118 2ell_A Acidic leucine-rich nuc 99.4 9.1E-13 3.1E-17 123.8 10.5 131 280-424 22-164 (168)
119 1z7x_W Ribonuclease inhibitor; 99.3 6.8E-14 2.3E-18 153.7 -1.5 142 337-482 199-380 (461)
120 2ell_A Acidic leucine-rich nuc 99.3 1.2E-12 3.9E-17 123.1 6.9 119 314-437 23-157 (168)
121 1z7x_W Ribonuclease inhibitor; 99.3 1E-13 3.5E-18 152.3 -1.4 200 275-483 163-409 (461)
122 1a9n_A U2A', U2A'; complex (nu 99.3 2.3E-12 7.9E-17 122.2 7.5 126 277-416 14-150 (176)
123 2je0_A Acidic leucine-rich nuc 99.3 2.2E-12 7.6E-17 118.6 6.6 120 282-414 17-148 (149)
124 2je0_A Acidic leucine-rich nuc 99.3 2.7E-12 9.2E-17 118.0 6.8 117 314-435 16-148 (149)
125 2wfh_A SLIT homolog 2 protein 99.3 2E-11 6.8E-16 117.6 12.9 114 318-436 13-135 (193)
126 1dce_A Protein (RAB geranylger 99.3 8.9E-12 3E-16 140.2 10.5 103 316-423 442-549 (567)
127 1a9n_A U2A', U2A'; complex (nu 99.3 6.7E-12 2.3E-16 118.9 7.6 118 315-437 19-150 (176)
128 2wfh_A SLIT homolog 2 protein 99.2 2.6E-11 8.8E-16 116.8 11.2 118 285-417 13-137 (193)
129 1w8a_A SLIT protein; signaling 99.2 5.2E-11 1.8E-15 114.6 12.8 95 318-416 11-112 (192)
130 1w8a_A SLIT protein; signaling 99.2 3.1E-11 1.1E-15 116.1 11.1 119 285-418 11-138 (192)
131 3sb4_A Hypothetical leucine ri 99.2 1.7E-10 5.9E-15 120.8 14.8 191 281-479 48-328 (329)
132 2o6r_A Variable lymphocyte rec 99.2 1.6E-10 5.4E-15 109.4 12.4 115 318-437 10-134 (177)
133 2o6r_A Variable lymphocyte rec 99.1 1.9E-10 6.5E-15 108.9 11.7 103 314-419 27-137 (177)
134 1ds9_A Outer arm dynein; leuci 99.1 2.1E-13 7.1E-18 132.1 -9.9 103 309-416 43-150 (198)
135 2r9u_A Variable lymphocyte rec 99.0 6E-10 2.1E-14 105.2 10.1 95 318-416 15-115 (174)
136 3g39_A Variable lymphocyte rec 99.0 6.9E-10 2.3E-14 104.4 10.0 96 317-416 11-112 (170)
137 3ogk_B Coronatine-insensitive 99.0 1.8E-11 6.3E-16 138.7 -1.3 33 448-480 378-411 (592)
138 3ogk_B Coronatine-insensitive 99.0 2.3E-11 7.8E-16 137.9 -2.4 125 280-415 110-252 (592)
139 1ds9_A Outer arm dynein; leuci 99.0 6.6E-12 2.3E-16 121.4 -7.3 123 275-412 41-180 (198)
140 2r9u_A Variable lymphocyte rec 98.9 2.1E-09 7.3E-14 101.4 9.5 107 285-406 15-128 (174)
141 4fdw_A Leucine rich hypothetic 98.9 2.4E-08 8.1E-13 107.3 17.2 193 270-483 146-356 (401)
142 3g39_A Variable lymphocyte rec 98.9 5E-09 1.7E-13 98.4 10.0 102 284-400 11-119 (170)
143 3sb4_A Hypothetical leucine ri 98.8 8.4E-09 2.9E-13 107.8 9.3 74 405-482 225-307 (329)
144 4fdw_A Leucine rich hypothetic 98.8 1.3E-07 4.6E-12 101.4 18.2 191 271-482 125-333 (401)
145 2p1m_B Transport inhibitor res 98.7 3.3E-10 1.1E-14 128.3 -4.2 189 280-481 128-347 (594)
146 2p1m_B Transport inhibitor res 98.7 8E-10 2.7E-14 125.2 -3.2 193 277-482 100-324 (594)
147 2ifg_A High affinity nerve gro 98.7 3.9E-08 1.3E-12 103.4 8.8 93 319-415 12-112 (347)
148 2ifg_A High affinity nerve gro 98.5 2.4E-07 8.4E-12 97.3 9.0 89 372-483 20-114 (347)
149 2fna_A Conserved hypothetical 98.4 3E-06 1E-10 88.9 13.8 185 23-220 137-355 (357)
150 3un9_A NLR family member X1; l 98.3 3.5E-08 1.2E-12 104.8 -3.1 160 281-464 71-255 (372)
151 2qen_A Walker-type ATPase; unk 98.3 1.8E-05 6.1E-10 82.7 17.3 197 14-221 118-348 (350)
152 3un9_A NLR family member X1; l 98.2 9.8E-08 3.3E-12 101.4 -2.4 124 282-437 101-249 (372)
153 2ra8_A Uncharacterized protein 97.9 1.9E-06 6.4E-11 90.9 1.6 101 382-483 192-318 (362)
154 1w5s_A Origin recognition comp 97.9 1.6E-05 5.4E-10 85.3 7.9 186 13-207 126-371 (412)
155 2ra8_A Uncharacterized protein 97.8 1.1E-05 3.7E-10 85.0 4.6 95 254-350 105-206 (362)
156 2qby_B CDC6 homolog 3, cell di 97.4 0.003 1E-07 66.6 17.3 185 12-207 122-339 (384)
157 4fs7_A Uncharacterized protein 97.4 0.001 3.6E-08 70.7 13.6 105 273-392 153-262 (394)
158 4fs7_A Uncharacterized protein 97.4 0.0011 3.8E-08 70.5 12.9 189 271-482 174-376 (394)
159 3e4g_A ATP synthase subunit S, 97.4 7.3E-05 2.5E-09 69.6 2.9 14 337-350 61-74 (176)
160 1io0_A Tropomodulin; LRR prote 97.3 3.7E-05 1.3E-09 72.8 0.7 118 275-416 29-161 (185)
161 4gt6_A Cell surface protein; l 97.3 0.006 2.1E-07 64.7 16.9 99 379-483 261-368 (394)
162 3rw6_A Nuclear RNA export fact 97.2 0.00022 7.4E-09 71.4 4.8 43 380-423 193-237 (267)
163 3e4g_A ATP synthase subunit S, 97.2 0.00011 3.9E-09 68.3 1.9 86 383-488 61-155 (176)
164 1njg_A DNA polymerase III subu 97.2 0.0014 4.8E-08 63.9 9.9 101 22-124 125-231 (250)
165 4h09_A Hypothetical leucine ri 97.0 0.018 6.2E-07 60.5 17.4 76 402-481 236-319 (379)
166 3rw6_A Nuclear RNA export fact 97.0 0.00047 1.6E-08 69.0 4.5 77 315-413 170-258 (267)
167 4gt6_A Cell surface protein; l 96.7 0.024 8.1E-07 60.0 15.6 53 426-481 287-343 (394)
168 1io0_A Tropomodulin; LRR prote 96.7 0.00042 1.4E-08 65.4 1.2 102 379-483 32-162 (185)
169 4h09_A Hypothetical leucine ri 96.3 0.018 6.3E-07 60.4 11.7 115 362-481 216-342 (379)
170 3rfe_A Platelet glycoprotein I 96.1 0.0077 2.7E-07 53.1 6.1 52 431-483 12-66 (130)
171 2qby_A CDC6 homolog 1, cell di 96.1 0.046 1.6E-06 57.2 13.3 185 13-207 116-348 (386)
172 2v1u_A Cell division control p 95.9 0.17 5.8E-06 52.8 16.5 185 13-207 118-351 (387)
173 2chg_A Replication factor C sm 95.8 0.027 9.4E-07 53.6 8.9 99 22-122 101-205 (226)
174 1sxj_B Activator 1 37 kDa subu 95.0 0.048 1.6E-06 55.6 8.1 96 21-118 105-206 (323)
175 3rfe_A Platelet glycoprotein I 94.5 0.042 1.4E-06 48.2 5.3 33 384-416 32-65 (130)
176 1hqc_A RUVB; extended AAA-ATPa 93.5 2.1 7.3E-05 43.2 16.9 180 15-208 79-299 (324)
177 1fnn_A CDC6P, cell division co 93.4 0.32 1.1E-05 50.7 10.6 183 15-207 115-351 (389)
178 1iqp_A RFCS; clamp loader, ext 92.7 0.34 1.2E-05 49.2 9.3 100 22-123 109-214 (327)
179 1jr3_A DNA polymerase III subu 89.0 1.2 4.1E-05 46.1 9.4 99 22-122 118-222 (373)
180 2chq_A Replication factor C sm 88.9 2.7 9.1E-05 42.2 11.7 98 22-121 101-204 (319)
181 1d2n_A N-ethylmaleimide-sensit 85.2 3.7 0.00013 40.4 10.0 114 21-141 122-263 (272)
182 1pgv_A TMD-1, tropomodulin TMD 82.7 0.17 5.8E-06 47.7 -1.2 36 315-350 70-111 (197)
183 3bos_A Putative DNA replicatio 82.4 1.1 3.8E-05 42.8 4.6 95 23-120 104-216 (242)
184 1pgv_A TMD-1, tropomodulin TMD 81.3 0.66 2.2E-05 43.6 2.3 36 315-350 41-83 (197)
185 1a5t_A Delta prime, HOLB; zinc 80.8 3.9 0.00013 41.7 8.3 93 22-121 107-205 (334)
186 1sxj_A Activator 1 95 kDa subu 78.9 5.2 0.00018 43.6 9.0 95 22-121 147-253 (516)
187 1sxj_E Activator 1 40 kDa subu 76.5 4.8 0.00016 41.1 7.5 98 23-121 134-237 (354)
188 2z4s_A Chromosomal replication 76.0 3.2 0.00011 44.2 6.1 101 16-119 187-304 (440)
189 3pfi_A Holliday junction ATP-d 69.3 95 0.0032 30.9 16.2 185 22-221 105-328 (338)
190 1sxj_D Activator 1 41 kDa subu 65.6 15 0.00052 37.1 8.3 98 22-121 132-235 (353)
191 3h4m_A Proteasome-activating n 58.2 30 0.001 33.7 8.7 94 21-118 108-228 (285)
192 2qz4_A Paraplegin; AAA+, SPG7, 52.3 71 0.0024 30.3 10.2 99 21-120 96-221 (262)
193 1l8q_A Chromosomal replication 51.3 27 0.00092 35.0 7.1 88 24-115 99-202 (324)
194 3d8b_A Fidgetin-like protein 1 47.6 1.5E+02 0.005 30.0 12.1 98 22-121 175-295 (357)
195 1jr3_D DNA polymerase III, del 47.5 43 0.0015 33.8 8.0 97 21-119 74-183 (343)
196 3eie_A Vacuolar protein sortin 46.0 1.4E+02 0.0048 29.5 11.6 91 21-113 108-219 (322)
197 2qp9_X Vacuolar protein sortin 44.2 1.8E+02 0.0062 29.3 12.2 91 21-113 141-252 (355)
198 3uk6_A RUVB-like 2; hexameric 44.0 55 0.0019 33.1 8.3 89 25-119 191-301 (368)
199 1xwi_A SKD1 protein; VPS4B, AA 41.9 2.3E+02 0.0079 28.0 12.4 92 21-114 103-215 (322)
200 1g5t_A COB(I)alamin adenosyltr 41.7 14 0.00046 34.5 2.7 48 12-59 108-163 (196)
201 2zan_A Vacuolar protein sortin 38.5 2.5E+02 0.0084 29.4 12.5 91 21-113 225-336 (444)
202 3u61_B DNA polymerase accessor 36.1 64 0.0022 32.0 7.1 94 23-118 105-213 (324)
203 3syl_A Protein CBBX; photosynt 32.5 42 0.0014 33.0 5.0 66 24-91 131-219 (309)
204 2gno_A DNA polymerase III, gam 32.2 22 0.00074 35.6 2.7 67 22-89 81-152 (305)
205 3pvs_A Replication-associated 32.0 85 0.0029 33.1 7.5 99 21-120 104-214 (447)
206 3vfd_A Spastin; ATPase, microt 31.8 3.3E+02 0.011 27.6 12.0 70 49-120 252-325 (389)
207 1utg_A Uteroglobin; steroid bi 29.4 83 0.0029 23.7 4.9 56 111-167 1-57 (70)
208 1sxj_C Activator 1 40 kDa subu 23.8 2.2E+02 0.0074 28.3 8.6 94 23-119 110-210 (340)
209 2c9o_A RUVB-like 1; hexameric 23.4 2.8E+02 0.0095 29.0 9.7 89 26-121 298-410 (456)
210 3te6_A Regulatory protein SIR3 22.1 2.1E+02 0.007 28.6 7.8 66 21-89 130-211 (318)
211 3b9p_A CG5977-PA, isoform A; A 21.8 5.3E+02 0.018 24.6 11.9 71 48-120 158-232 (297)
212 1ccd_A Clara cell 17 KD protei 20.4 1E+02 0.0035 23.7 3.9 57 110-167 2-59 (77)
213 1jbk_A CLPB protein; beta barr 20.3 63 0.0021 28.5 3.2 60 21-85 113-194 (195)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.97 E-value=4.8e-31 Score=297.09 Aligned_cols=211 Identities=17% Similarity=0.165 Sum_probs=173.6
Q ss_pred chHHHHHHhCCC-eEEEEEECcChh--HHHhhcCCCCCCCCcEEEEEeCCchhhhccC-CceEEEcCCCCHHHHHHHHHH
Q 005709 12 ITPNIKKRLQQR-KVLIVLDDVDDN--SKNFAGGLELFSPGSRIIITTRDKRLLDKRR-VENVYEVKGLKHNSALELFCR 87 (681)
Q Consensus 12 ~~~~i~~~L~~k-r~LiVLDdv~~~--~~~l~~~~~~~~~gSrIivTTR~~~v~~~~~-~~~~~~l~~L~~~e~~~Lf~~ 87 (681)
+...+++.|+++ ||||||||||+. + .+.. .+||+||||||++.|+..++ ...+|+|++|+.+|||+||.+
T Consensus 231 l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~ 304 (549)
T 2a5y_B 231 LKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEA 304 (549)
T ss_dssp HHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHH
Confidence 378999999996 999999999997 4 2221 28999999999999999886 456899999999999999999
Q ss_pred HhccCCCCChhHHHHHHHHHHHcCCChhHHHHHHhhhcCCCHHHHHHHHH-HhhhcCChhHHHHHHHHhcCCCHHHHHHH
Q 005709 88 KAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGSSLYQKSKEQWKDKLR-KLKLITDPNIYKVLKISYDGLNWEEKEIF 166 (681)
Q Consensus 88 ~af~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~L~~k~~~~w~~~l~-~l~~~~~~~i~~~l~~sy~~L~~~~k~cf 166 (681)
+||+... .+.+.+++.+|+++|+|+||||+++|+.|+.++ ++|...+. .++.....++..++.+||++||+++|.||
T Consensus 305 ~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~~~~~i~~~l~~Sy~~L~~~lk~~f 382 (549)
T 2a5y_B 305 YGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCV 382 (549)
T ss_dssp TSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHHCSSTTCCCSSSSSSSHHHHHHHHH
T ss_pred HhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhcccHHHHHHHHhcccccccHHHHHHH
Confidence 9987643 467889999999999999999999999998875 33333333 23333566788999999999999999999
Q ss_pred h-----------hhcccCCCCCHHHHHHhhc--CCCc----------hhhhHHHHhhccceeEe----CCeEeehHHHHH
Q 005709 167 L-----------DVACFFKGEDVDFVTRVQD--DPTS----------MHNGLNTLVEMSLITIS----ANRLQMHDILQE 219 (681)
Q Consensus 167 l-----------~~a~Fp~~~~~~~~~~i~~--~~~~----------~~~~~~~L~~~sli~~~----~~~~~mHdll~~ 219 (681)
+ |||+||+++.++...|+++ |+.. ...++++|+++||++.. ..+|+|||+||+
T Consensus 383 ~~Ls~~er~l~~~ls~fp~~~~i~i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~ 462 (549)
T 2a5y_B 383 EVLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLSGKRMPVLTFKIDHIIHM 462 (549)
T ss_dssp HTSCHHHHHHTTGGGSSCTTCCEEHHHHHHHSCC-------CCCTHHHHHHHHHTTTBSSCSEEECSSSCEEECCHHHHH
T ss_pred hccchhhhhHhhheeeeCCCCeeeeeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcCCeeEecCCCceEEEeChHHHH
Confidence 9 9999999999997778888 6522 12379999999999986 247999999999
Q ss_pred HHHHHhhhccc
Q 005709 220 LGKTIILQESF 230 (681)
Q Consensus 220 ~~~~i~~~e~~ 230 (681)
||++++.++++
T Consensus 463 ~a~~~~~~~~~ 473 (549)
T 2a5y_B 463 FLKHVVDAQTI 473 (549)
T ss_dssp HHHTTSCTHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887753
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.93 E-value=1.5e-25 Score=276.85 Aligned_cols=206 Identities=22% Similarity=0.298 Sum_probs=170.9
Q ss_pred chHHHHHHhCCC--eEEEEEECcChh--HHHhhcCCCCCCCCcEEEEEeCCchhhhc-cCCceEEEcCC-CCHHHHHHHH
Q 005709 12 ITPNIKKRLQQR--KVLIVLDDVDDN--SKNFAGGLELFSPGSRIIITTRDKRLLDK-RRVENVYEVKG-LKHNSALELF 85 (681)
Q Consensus 12 ~~~~i~~~L~~k--r~LiVLDdv~~~--~~~l~~~~~~~~~gSrIivTTR~~~v~~~-~~~~~~~~l~~-L~~~e~~~Lf 85 (681)
+.+.+++.|.++ |+||||||||+. |+.+ ++|||||||||++.|+.. ++....+++++ |+++||++||
T Consensus 223 ~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~ 295 (1249)
T 3sfz_A 223 AKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEIL 295 (1249)
T ss_dssp HHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHH
T ss_pred HHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHH
Confidence 455666667666 999999999998 5543 689999999999999954 45667899996 9999999999
Q ss_pred HHHhccCCCCChhHHHHHHHHHHHcCCChhHHHHHHhhhcCCCHHHHHHHHHHhhhcCC-----------hhHHHHHHHH
Q 005709 86 CRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGSSLYQKSKEQWKDKLRKLKLITD-----------PNIYKVLKIS 154 (681)
Q Consensus 86 ~~~af~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~L~~k~~~~w~~~l~~l~~~~~-----------~~i~~~l~~s 154 (681)
...++... +++.+++++|+++|+|+||||+++|++|+.+. .+|+..++++..... ..+..++.+|
T Consensus 296 ~~~~~~~~---~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s 371 (1249)
T 3sfz_A 296 SLFVNMKK---EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSIS 371 (1249)
T ss_dssp HHHHTSCS---TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHH
T ss_pred HHhhCCCh---hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHH
Confidence 99985432 34556789999999999999999999999866 579999998865431 3589999999
Q ss_pred hcCCCHHHHHHHhhhcccCCCCCHHHH--HHhhcCC-CchhhhHHHHhhccceeEe-CC---eEeehHHHHHHHHHHhhh
Q 005709 155 YDGLNWEEKEIFLDVACFFKGEDVDFV--TRVQDDP-TSMHNGLNTLVEMSLITIS-AN---RLQMHDILQELGKTIILQ 227 (681)
Q Consensus 155 y~~L~~~~k~cfl~~a~Fp~~~~~~~~--~~i~~~~-~~~~~~~~~L~~~sli~~~-~~---~~~mHdll~~~~~~i~~~ 227 (681)
|+.|++++|.||+|||+||+++.++.. ..++... ..++.++++|+++||++.. ++ +|+||+++|+++++.+.+
T Consensus 372 ~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~ 451 (1249)
T 3sfz_A 372 VEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRS 451 (1249)
T ss_dssp HHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGG
T ss_pred HHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhH
Confidence 999999999999999999999887653 3344433 5678889999999999987 44 499999999999998766
Q ss_pred c
Q 005709 228 E 228 (681)
Q Consensus 228 e 228 (681)
+
T Consensus 452 ~ 452 (1249)
T 3sfz_A 452 Q 452 (1249)
T ss_dssp G
T ss_pred H
Confidence 5
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.91 E-value=4.1e-25 Score=253.34 Aligned_cols=187 Identities=19% Similarity=0.285 Sum_probs=150.9
Q ss_pred chHHHHHHh---CCCeEEEEEECcChh--HHHhhcCCCCCCCCcEEEEEeCCchhhhccCCceEEEcC------CCCHHH
Q 005709 12 ITPNIKKRL---QQRKVLIVLDDVDDN--SKNFAGGLELFSPGSRIIITTRDKRLLDKRRVENVYEVK------GLKHNS 80 (681)
Q Consensus 12 ~~~~i~~~L---~~kr~LiVLDdv~~~--~~~l~~~~~~~~~gSrIivTTR~~~v~~~~~~~~~~~l~------~L~~~e 80 (681)
+.+.+++.| .+||+||||||||+. |+.+ ++|||||||||++.++..+.....|+|+ +|+.+|
T Consensus 230 L~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-------~pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~eE 302 (1221)
T 1vt4_I 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302 (1221)
T ss_dssp HHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-------HSSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCHHH
T ss_pred HHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh-------CCCeEEEEeccChHHHHhcCCCeEEEecCccccCCcCHHH
Confidence 355677765 689999999999998 7765 2799999999999998655433456777 999999
Q ss_pred HHHHHHHHhccCCCCChhHHHHHHHHHHHcCCChhHHHHHHhhhcCC--CHHHHHHHHHHhhhcCChhHHHHHHHHhcCC
Q 005709 81 ALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGSSLYQK--SKEQWKDKLRKLKLITDPNIYKVLKISYDGL 158 (681)
Q Consensus 81 ~~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~L~~k--~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L 158 (681)
||+||++.. +.. ..+++.++ |+|+||||+++|+.|+++ +.++|+.. ....+..++++||+.|
T Consensus 303 A~eLF~~~~-g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~-------~~~~I~aaLelSYd~L 366 (1221)
T 1vt4_I 303 VKSLLLKYL-DCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV-------NCDKLTTIIESSLNVL 366 (1221)
T ss_dssp HHHHHHHHH-CCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC-------SCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHc-CCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC-------ChhHHHHHHHHHHHhC
Confidence 999999984 322 12334444 999999999999999986 78899764 3578999999999999
Q ss_pred CHHH-HHHHhhhcccCCCCCHHH--HHH--hhcCCCchhhhHHHHhhccceeEe--CCeEeehHHHHHHH
Q 005709 159 NWEE-KEIFLDVACFFKGEDVDF--VTR--VQDDPTSMHNGLNTLVEMSLITIS--ANRLQMHDILQELG 221 (681)
Q Consensus 159 ~~~~-k~cfl~~a~Fp~~~~~~~--~~~--i~~~~~~~~~~~~~L~~~sli~~~--~~~~~mHdll~~~~ 221 (681)
|+++ |.||+|||+||+++.++. +.. +++|...++.++++|+++||++.. .++|+|||++++++
T Consensus 367 p~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp CTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 9999 999999999999988754 333 334434578899999999999986 46899999999865
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.89 E-value=4.1e-23 Score=235.16 Aligned_cols=201 Identities=23% Similarity=0.330 Sum_probs=162.2
Q ss_pred chHHHHHHhCC--CeEEEEEECcChh--HHHhhcCCCCCCCCcEEEEEeCCchhhhccCCceEEEc---CCCCHHHHHHH
Q 005709 12 ITPNIKKRLQQ--RKVLIVLDDVDDN--SKNFAGGLELFSPGSRIIITTRDKRLLDKRRVENVYEV---KGLKHNSALEL 84 (681)
Q Consensus 12 ~~~~i~~~L~~--kr~LiVLDdv~~~--~~~l~~~~~~~~~gSrIivTTR~~~v~~~~~~~~~~~l---~~L~~~e~~~L 84 (681)
....+++.+.+ +++||||||||+. ++. +++|++||||||++.++..++ ...|++ ++|+.+||++|
T Consensus 223 ~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~-------l~~~~~ilvTsR~~~~~~~~~-~~~~~v~~l~~L~~~ea~~L 294 (591)
T 1z6t_A 223 AKDRLRILMLRKHPRSLLILDDVWDSWVLKA-------FDSQCQILLTTRDKSVTDSVM-GPKYVVPVESSLGKEKGLEI 294 (591)
T ss_dssp HHHHHHHHHHHTCTTCEEEEEEECCHHHHHT-------TCSSCEEEEEESCGGGGTTCC-SCEEEEECCSSCCHHHHHHH
T ss_pred HHHHHHHHHccCCCCeEEEEeCCCCHHHHHH-------hcCCCeEEEECCCcHHHHhcC-CCceEeecCCCCCHHHHHHH
Confidence 45667777766 7899999999987 543 368999999999999887654 345665 48999999999
Q ss_pred HHHHhccCCCCChhHHHHHHHHHHHcCCChhHHHHHHhhhcCCCHHHHHHHHHHhhhcC-----------ChhHHHHHHH
Q 005709 85 FCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGSSLYQKSKEQWKDKLRKLKLIT-----------DPNIYKVLKI 153 (681)
Q Consensus 85 f~~~af~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~L~~k~~~~w~~~l~~l~~~~-----------~~~i~~~l~~ 153 (681)
|...++... ....+.+.+|+++|+|+||||+.+|+.|+.+. .+|+.+++.+.... ...+..++..
T Consensus 295 ~~~~~~~~~---~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 370 (591)
T 1z6t_A 295 LSLFVNMKK---ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSI 370 (591)
T ss_dssp HHHHHTSCG---GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHH
T ss_pred HHHHhCCCc---ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHH
Confidence 999987522 23345789999999999999999999998764 37999998887533 2468999999
Q ss_pred HhcCCCHHHHHHHhhhcccCCCCCHHH--HHHhhcCC-CchhhhHHHHhhccceeEe--C--CeEeehHHHHHHHHHH
Q 005709 154 SYDGLNWEEKEIFLDVACFFKGEDVDF--VTRVQDDP-TSMHNGLNTLVEMSLITIS--A--NRLQMHDILQELGKTI 224 (681)
Q Consensus 154 sy~~L~~~~k~cfl~~a~Fp~~~~~~~--~~~i~~~~-~~~~~~~~~L~~~sli~~~--~--~~~~mHdll~~~~~~i 224 (681)
||+.||++.|.||+++|+||+|..++. +..++... ..++..+++|+++|||+.. + .+|+||+++++++++.
T Consensus 371 s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 371 SVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp HHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhh
Confidence 999999999999999999999988764 33344332 4567889999999999876 2 3799999999999877
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=9.3e-22 Score=207.00 Aligned_cols=189 Identities=22% Similarity=0.265 Sum_probs=105.1
Q ss_pred CCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCC-CCCCceEEEcCCCCccccccccccc
Q 005709 281 MSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSF-EPNYLIELNLPYSKVEQIWIGEKKA 359 (681)
Q Consensus 281 l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~lp~~~~~l 359 (681)
.++++.|++++|.+ ..+|..+..+ ++|++|++++|.++.+|..+ .+++|++|+|++|.++.+|..+..
T Consensus 80 ~~~l~~L~L~~n~l---------~~lp~~l~~l-~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~- 148 (328)
T 4fcg_A 80 QPGRVALELRSVPL---------PQFPDQAFRL-SHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIAS- 148 (328)
T ss_dssp STTCCEEEEESSCC---------SSCCSCGGGG-TTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGG-
T ss_pred ccceeEEEccCCCc---------hhcChhhhhC-CCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhc-
Confidence 35556666665553 2455555554 45666666666655555555 556666666666666555555555
Q ss_pred ccccccceecc---cCCcccCC-CCC---------CCCCcEEEcccCCCcccCccccCCCccceeccccccccCcCCCC-
Q 005709 360 FKLKFINLYNS---RYLTRLPE-FSE---------IPNLERINLSGSELERLPATIKQFSQLRYLYLRNCNMLQSLPEL- 425 (681)
Q Consensus 360 ~~L~~L~~L~l---~~l~~lp~-~~~---------l~~L~~L~L~~n~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~- 425 (681)
+++|++|++ +.++.+|. ++. +++|++|++++|.++.+|.+++++++|++|++++| .+..+|..
T Consensus 149 --l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N-~l~~l~~~l 225 (328)
T 4fcg_A 149 --LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS-PLSALGPAI 225 (328)
T ss_dssp --CTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESS-CCCCCCGGG
T ss_pred --CcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCC-CCCcCchhh
Confidence 555666655 33444553 332 56666666666666666666666666666666653 34445443
Q ss_pred --CCCCCEEeccCCCCCcccCCCCC---CccEEecccccccccccccccCCCCCcEEEccCCc
Q 005709 426 --PLLLSHLDASNCKRLQSLPEISS---CLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 426 --l~~L~~L~l~~c~~l~~lp~~~~---~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~ 483 (681)
+++|++|++++|+..+.+|..++ +|+.|++++|.+.+..+..++++++|+.|++++|.
T Consensus 226 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 226 HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC
Confidence 55566666666655555555443 56666666655443333335666666666665544
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=3e-21 Score=203.13 Aligned_cols=215 Identities=20% Similarity=0.237 Sum_probs=183.8
Q ss_pred CcEEEEEeecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCC-
Q 005709 256 DAIEGIFFDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSF- 334 (681)
Q Consensus 256 ~~v~~l~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~- 334 (681)
..++.+.+..+... .+ |..+.++++|++|++++|.+ . .+|..+..+ ++|++|++++|.++.+|..+
T Consensus 81 ~~l~~L~L~~n~l~--~l-p~~l~~l~~L~~L~L~~n~l--------~-~lp~~~~~l-~~L~~L~Ls~n~l~~lp~~l~ 147 (328)
T 4fcg_A 81 PGRVALELRSVPLP--QF-PDQAFRLSHLQHMTIDAAGL--------M-ELPDTMQQF-AGLETLTLARNPLRALPASIA 147 (328)
T ss_dssp TTCCEEEEESSCCS--SC-CSCGGGGTTCSEEEEESSCC--------C-CCCSCGGGG-TTCSEEEEESCCCCCCCGGGG
T ss_pred cceeEEEccCCCch--hc-ChhhhhCCCCCEEECCCCCc--------c-chhHHHhcc-CCCCEEECCCCccccCcHHHh
Confidence 45666666655543 33 44577899999999999985 3 788888888 78999999999999999998
Q ss_pred CCCCceEEEcCCCC-cccccccccc------cccccccceecc--cCCcccCC-CCCCCCCcEEEcccCCCcccCccccC
Q 005709 335 EPNYLIELNLPYSK-VEQIWIGEKK------AFKLKFINLYNS--RYLTRLPE-FSEIPNLERINLSGSELERLPATIKQ 404 (681)
Q Consensus 335 ~l~~L~~L~L~~n~-l~~lp~~~~~------l~~L~~L~~L~l--~~l~~lp~-~~~l~~L~~L~L~~n~l~~lp~~i~~ 404 (681)
.+++|++|+|++|+ +..+|..+.. +.++++|++|++ +.++.+|. ++++++|++|+|++|.++.+|+.+++
T Consensus 148 ~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~ 227 (328)
T 4fcg_A 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHH 227 (328)
T ss_dssp GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGG
T ss_pred cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhcc
Confidence 99999999999965 4577776542 334999999999 88889997 99999999999999999999999999
Q ss_pred CCccceeccccccccCcCCCC---CCCCCEEeccCCCCCcccCCCCC---CccEEecccccccccccccccCCCCCcEEE
Q 005709 405 FSQLRYLYLRNCNMLQSLPEL---PLLLSHLDASNCKRLQSLPEISS---CLEELDISILEKLSKTTFPIKHGCSLMQFE 478 (681)
Q Consensus 405 L~~L~~L~L~~c~~l~~lp~~---l~~L~~L~l~~c~~l~~lp~~~~---~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 478 (681)
+++|++|++++|+..+.+|.. +++|++|++++|+.++.+|..+. +|+.|++++|.+.+..+..++++++|+.++
T Consensus 228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~ 307 (328)
T 4fcg_A 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307 (328)
T ss_dssp CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEE
T ss_pred CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEe
Confidence 999999999999999999976 78999999999999999998766 999999999887654444499999999999
Q ss_pred ccCCc
Q 005709 479 FQNCW 483 (681)
Q Consensus 479 l~~c~ 483 (681)
+..+.
T Consensus 308 l~~~~ 312 (328)
T 4fcg_A 308 VPPHL 312 (328)
T ss_dssp CCGGG
T ss_pred CCHHH
Confidence 98654
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.84 E-value=4.2e-21 Score=212.69 Aligned_cols=208 Identities=20% Similarity=0.230 Sum_probs=166.5
Q ss_pred eecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCC-C-CCCCce
Q 005709 263 FDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFS-F-EPNYLI 340 (681)
Q Consensus 263 l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~ 340 (681)
|+++.+....+.+..|.++++|+.|++++|.+ ....|..+..+ ++|++|++++|.++.+|.. | ++++|+
T Consensus 37 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i--------~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 107 (477)
T 2id5_A 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIV--------SAVEPGAFNNL-FNLRTLGLRSNRLKLIPLGVFTGLSNLT 107 (477)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECTTSCC--------CEECTTTTTTC-TTCCEEECCSSCCCSCCTTSSTTCTTCC
T ss_pred EECCCCccceECHhHccCCCCCCEEECCCCcc--------CEeChhhhhCC-ccCCEEECCCCcCCccCcccccCCCCCC
Confidence 45566666667788999999999999998876 44456777777 7899999999999999876 5 899999
Q ss_pred EEEcCCCCcccc-cccccccccccccceecc--cCCcccCC--CCCCCCCcEEEcccCCCcccCcc-ccCCCccceeccc
Q 005709 341 ELNLPYSKVEQI-WIGEKKAFKLKFINLYNS--RYLTRLPE--FSEIPNLERINLSGSELERLPAT-IKQFSQLRYLYLR 414 (681)
Q Consensus 341 ~L~L~~n~l~~l-p~~~~~l~~L~~L~~L~l--~~l~~lp~--~~~l~~L~~L~L~~n~l~~lp~~-i~~L~~L~~L~L~ 414 (681)
+|+|++|.++.+ |..+.. +++|+.|++ +.+..++. |+++++|+.|++++|.++.+|.. +.++++|+.|+++
T Consensus 108 ~L~Ls~n~i~~~~~~~~~~---l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 184 (477)
T 2id5_A 108 KLDISENKIVILLDYMFQD---LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR 184 (477)
T ss_dssp EEECTTSCCCEECTTTTTT---CTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEE
T ss_pred EEECCCCccccCChhHccc---cccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCC
Confidence 999999999876 455666 899999999 66776653 88999999999999999888764 8888999999998
Q ss_pred cccccCcCCCC----CCCCCEEeccCCCCCcccCCCCC---CccEEecccccccccccccccCCCCCcEEEccCCc
Q 005709 415 NCNMLQSLPEL----PLLLSHLDASNCKRLQSLPEISS---CLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 415 ~c~~l~~lp~~----l~~L~~L~l~~c~~l~~lp~~~~---~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~ 483 (681)
+| .+..++.. +++|+.|++++|+.++.+|.... +|+.|++++|.+..+|...+.++++|+.|++++|.
T Consensus 185 ~n-~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 259 (477)
T 2id5_A 185 HL-NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP 259 (477)
T ss_dssp SC-CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC
T ss_pred CC-cCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc
Confidence 85 45555543 77888888888887877776554 78888888888888776557788888888888775
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=3.4e-20 Score=193.77 Aligned_cols=216 Identities=13% Similarity=0.134 Sum_probs=179.1
Q ss_pred CcEEEEEeecCCCcccccCHHHhcCCCCCceEEEeC-CCCCCCcccccccccCccccccccCccEEEecCCCCC-CCCCC
Q 005709 256 DAIEGIFFDLSKINYLHLSPQAFANMSSLTLLKFYM-PECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLK-TLPFS 333 (681)
Q Consensus 256 ~~v~~l~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~-n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~-~lp~~ 333 (681)
..++.+.+...........+..|.++++|++|++++ |.+ .+.+|..+..+ ++|++|++++|.++ .+|..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l--------~~~~p~~l~~l-~~L~~L~Ls~n~l~~~~p~~ 120 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL--------VGPIPPAIAKL-TQLHYLYITHTNVSGAIPDF 120 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTE--------ESCCCGGGGGC-TTCSEEEEEEECCEEECCGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcc--------cccCChhHhcC-CCCCEEECcCCeeCCcCCHH
Confidence 577777776665543114567999999999999995 775 66788888888 78999999999998 68888
Q ss_pred C-CCCCceEEEcCCCCcc-cccccccccccccccceecc--cCCc-ccCC-CCCCC-CCcEEEcccCCCc-ccCccccCC
Q 005709 334 F-EPNYLIELNLPYSKVE-QIWIGEKKAFKLKFINLYNS--RYLT-RLPE-FSEIP-NLERINLSGSELE-RLPATIKQF 405 (681)
Q Consensus 334 ~-~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~~L~l--~~l~-~lp~-~~~l~-~L~~L~L~~n~l~-~lp~~i~~L 405 (681)
+ .+++|++|+|++|.++ .+|..+.. +++|++|++ +.+. .+|. ++.++ +|++|++++|.++ .+|..++.+
T Consensus 121 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~---l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l 197 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNALSGTLPPSISS---LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197 (313)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGG---CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred HhCCCCCCEEeCCCCccCCcCChHHhc---CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC
Confidence 8 9999999999999998 78888888 999999999 7776 7886 88888 9999999999998 788889999
Q ss_pred CccceeccccccccCcCCCC---CCCCCEEeccCCCCCcccCCC--CCCccEEecccccccccccccccCCCCCcEEEcc
Q 005709 406 SQLRYLYLRNCNMLQSLPEL---PLLLSHLDASNCKRLQSLPEI--SSCLEELDISILEKLSKTTFPIKHGCSLMQFEFQ 480 (681)
Q Consensus 406 ~~L~~L~L~~c~~l~~lp~~---l~~L~~L~l~~c~~l~~lp~~--~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 480 (681)
+ |+.|++++|...+..|.. +++|+.|++++|...+.+|.. +.+|++|++++|.+.+..+..+..+++|+.|+++
T Consensus 198 ~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 276 (313)
T 1ogq_A 198 N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276 (313)
T ss_dssp C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECC
T ss_pred c-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECc
Confidence 8 999999997654445543 789999999997655555542 2299999999999995555449999999999999
Q ss_pred CCcc
Q 005709 481 NCWE 484 (681)
Q Consensus 481 ~c~~ 484 (681)
+|..
T Consensus 277 ~N~l 280 (313)
T 1ogq_A 277 FNNL 280 (313)
T ss_dssp SSEE
T ss_pred CCcc
Confidence 8863
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.83 E-value=1.1e-20 Score=221.70 Aligned_cols=200 Identities=19% Similarity=0.193 Sum_probs=149.0
Q ss_pred cCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCC-CCCCC-C--CCCceEEEcCCCC
Q 005709 273 LSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKT-LPFSF-E--PNYLIELNLPYSK 348 (681)
Q Consensus 273 ~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~-lp~~~-~--l~~L~~L~L~~n~ 348 (681)
++...|.++++|+.|++++|.+ .+.+|..+..++.+|++|++++|.++. +|..+ . +++|++|++++|.
T Consensus 334 ip~~~l~~l~~L~~L~Ls~n~l--------~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~ 405 (768)
T 3rgz_A 334 LPMDTLLKMRGLKVLDLSFNEF--------SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405 (768)
T ss_dssp CCHHHHTTCTTCCEEECCSSEE--------EECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSE
T ss_pred CCHHHHhcCCCCCEEeCcCCcc--------CccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCc
Confidence 3444566666666666666654 446677777765578888888877663 55554 3 6778888888888
Q ss_pred cc-cccccccccccccccceecc--cCCc-ccCC-CCCCCCCcEEEcccCCCc-ccCccccCCCccceeccccccccCcC
Q 005709 349 VE-QIWIGEKKAFKLKFINLYNS--RYLT-RLPE-FSEIPNLERINLSGSELE-RLPATIKQFSQLRYLYLRNCNMLQSL 422 (681)
Q Consensus 349 l~-~lp~~~~~l~~L~~L~~L~l--~~l~-~lp~-~~~l~~L~~L~L~~n~l~-~lp~~i~~L~~L~~L~L~~c~~l~~l 422 (681)
++ .+|..+.. +++|+.|++ +.+. .+|. ++.+++|++|++++|.+. .+|..++.+++|++|++++|...+.+
T Consensus 406 l~~~~p~~l~~---l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 482 (768)
T 3rgz_A 406 FTGKIPPTLSN---CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482 (768)
T ss_dssp EEEECCGGGGG---CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred cccccCHHHhc---CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcC
Confidence 87 66777777 888888888 5554 5565 888888888888888877 67888888888888888887666677
Q ss_pred CCC---CCCCCEEeccCCCCCcccCCCCC---CccEEecccccccccccccccCCCCCcEEEccCCc
Q 005709 423 PEL---PLLLSHLDASNCKRLQSLPEISS---CLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 423 p~~---l~~L~~L~l~~c~~l~~lp~~~~---~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~ 483 (681)
|.. +++|+.|++++|...+.+|..++ +|+.|++++|.+.+..+..++++++|+.|++++|.
T Consensus 483 p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred CHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 765 77888888888776667887765 88888888888875555448888888888888774
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.82 E-value=4.7e-21 Score=219.80 Aligned_cols=213 Identities=15% Similarity=0.158 Sum_probs=143.6
Q ss_pred CcEEEEEeecCCCcccccCHHHhcCCCCCceEEEeCCC-CCCCccccccc-ccCccccccc-----cCccEEEecCCCCC
Q 005709 256 DAIEGIFFDLSKINYLHLSPQAFANMSSLTLLKFYMPE-CNGVPIMSSKL-HLNQDLEYLP-----KKLRYLHWHEYPLK 328 (681)
Q Consensus 256 ~~v~~l~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~-~~~~~~~~~~~-~l~~~l~~l~-----~~L~~L~l~~~~l~ 328 (681)
..++.+.+..+ ......|..|.++++|+.|++++|. + .+ .+|..+..+. ++|++|++++|.++
T Consensus 249 ~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~Ls~n~~l--------~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 249 KDLTDVEVYNC--PNLTKLPTFLKALPEMQLINVACNRGI--------SGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTCCEEEEECC--TTCSSCCTTTTTCSSCCEEECTTCTTS--------CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CCCCEEEecCC--cCCccChHHHhcCCCCCEEECcCCCCC--------ccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 45555555443 3334456788889999999999886 5 55 6777766652 67888888888888
Q ss_pred CCCC--CC-CCCCceEEEcCCCCcc-cccccccccccccccceecc--cCCcccCC-CCCCCC-CcEEEcccCCCcccCc
Q 005709 329 TLPF--SF-EPNYLIELNLPYSKVE-QIWIGEKKAFKLKFINLYNS--RYLTRLPE-FSEIPN-LERINLSGSELERLPA 400 (681)
Q Consensus 329 ~lp~--~~-~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~~L~l--~~l~~lp~-~~~l~~-L~~L~L~~n~l~~lp~ 400 (681)
.+|. .+ .+++|++|++++|.++ .+| .+.. +++|+.|++ +.+..+|. ++.+++ |++|++++|.++.+|.
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~---l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~ 394 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS---EIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPN 394 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEE---EEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCS
T ss_pred ccCchhhhccCCCCCEEeCcCCcCccchh-hhCC---CCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccch
Confidence 8888 66 8888888888888888 777 6666 788888888 66777775 777777 8888888888887777
Q ss_pred cccCCC--ccceeccccccccCcCCCC----------CCCCCEEeccCCCCCcccCCCC----CCccEEecccccccccc
Q 005709 401 TIKQFS--QLRYLYLRNCNMLQSLPEL----------PLLLSHLDASNCKRLQSLPEIS----SCLEELDISILEKLSKT 464 (681)
Q Consensus 401 ~i~~L~--~L~~L~L~~c~~l~~lp~~----------l~~L~~L~l~~c~~l~~lp~~~----~~L~~L~l~~n~l~~~~ 464 (681)
.++.++ +|+.|++++|...+.+|.. +++|++|++++| .+..+|..+ .+|+.|++++|.+..+|
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~ 473 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLTEIP 473 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSCCSBCC
T ss_pred hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCCCCCcC
Confidence 766654 6777777776554444432 235666666664 344555432 25666666666666555
Q ss_pred cccccCCC-------CCcEEEccCCc
Q 005709 465 TFPIKHGC-------SLMQFEFQNCW 483 (681)
Q Consensus 465 ~~~l~~l~-------~L~~L~l~~c~ 483 (681)
...+..+. +|+.|++++|.
T Consensus 474 ~~~~~~~~~~~~~l~~L~~L~Ls~N~ 499 (636)
T 4eco_A 474 KNSLKDENENFKNTYLLTSIDLRFNK 499 (636)
T ss_dssp SSSSEETTEECTTGGGCCEEECCSSC
T ss_pred HHHhccccccccccCCccEEECcCCc
Confidence 54333222 56666665553
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.82 E-value=2.4e-21 Score=222.31 Aligned_cols=197 Identities=15% Similarity=0.204 Sum_probs=175.7
Q ss_pred CHHHhc--CCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCC-CCC--CCCCC-CC------CCceE
Q 005709 274 SPQAFA--NMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYP-LKT--LPFSF-EP------NYLIE 341 (681)
Q Consensus 274 ~~~~f~--~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~-l~~--lp~~~-~l------~~L~~ 341 (681)
.|..+. ++++|++|++++|.+ .+.+|..+..+ ++|++|++++|. ++. +|..+ .+ ++|++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l--------~~~~p~~l~~l-~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~ 309 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPN--------LTKLPTFLKAL-PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTT--------CSSCCTTTTTC-SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCE
T ss_pred CchhhhhcccCCCCEEEecCCcC--------CccChHHHhcC-CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCE
Confidence 466777 999999999999987 78899999998 799999999998 885 88877 65 99999
Q ss_pred EEcCCCCcccccc--cccccccccccceecc--cCCc-ccCCCCCCCCCcEEEcccCCCcccCccccCCCc-cceecccc
Q 005709 342 LNLPYSKVEQIWI--GEKKAFKLKFINLYNS--RYLT-RLPEFSEIPNLERINLSGSELERLPATIKQFSQ-LRYLYLRN 415 (681)
Q Consensus 342 L~L~~n~l~~lp~--~~~~l~~L~~L~~L~l--~~l~-~lp~~~~l~~L~~L~L~~n~l~~lp~~i~~L~~-L~~L~L~~ 415 (681)
|++++|.++.+|. .++. +++|+.|++ +.+. .+|.++.+++|++|++++|.++.+|.+++++++ |++|++++
T Consensus 310 L~L~~n~l~~ip~~~~l~~---l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~ 386 (636)
T 4eco_A 310 IYIGYNNLKTFPVETSLQK---MKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH 386 (636)
T ss_dssp EECCSSCCSSCCCHHHHTT---CTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCS
T ss_pred EECCCCcCCccCchhhhcc---CCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccC
Confidence 9999999999998 8888 999999999 7777 899999999999999999999999999999999 99999999
Q ss_pred ccccCcCCCC-----CCCCCEEeccCCCCCcccCCCCC----------CccEEecccccccccccccccCCCCCcEEEcc
Q 005709 416 CNMLQSLPEL-----PLLLSHLDASNCKRLQSLPEISS----------CLEELDISILEKLSKTTFPIKHGCSLMQFEFQ 480 (681)
Q Consensus 416 c~~l~~lp~~-----l~~L~~L~l~~c~~l~~lp~~~~----------~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 480 (681)
|. +..+|.. +++|+.|++++|...+.+|..++ +|+.|++++|.+..+|...+..+++|+.|+++
T Consensus 387 N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls 465 (636)
T 4eco_A 387 NK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLM 465 (636)
T ss_dssp SC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECC
T ss_pred Cc-CcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECC
Confidence 55 6689976 34799999999877776776554 89999999999999998866779999999999
Q ss_pred CCc
Q 005709 481 NCW 483 (681)
Q Consensus 481 ~c~ 483 (681)
+|.
T Consensus 466 ~N~ 468 (636)
T 4eco_A 466 GNM 468 (636)
T ss_dssp SSC
T ss_pred CCC
Confidence 986
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.82 E-value=1.2e-20 Score=221.31 Aligned_cols=213 Identities=15% Similarity=0.114 Sum_probs=141.0
Q ss_pred CcEEEEEeecCCCcccccCHHHhcCCCCCceEEEeCCC-CCCCccccccc-ccCccccccc------cCccEEEecCCCC
Q 005709 256 DAIEGIFFDLSKINYLHLSPQAFANMSSLTLLKFYMPE-CNGVPIMSSKL-HLNQDLEYLP------KKLRYLHWHEYPL 327 (681)
Q Consensus 256 ~~v~~l~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~-~~~~~~~~~~~-~l~~~l~~l~------~~L~~L~l~~~~l 327 (681)
..++.+.+..+ ......|..|.++++|+.|++++|. + .+ .+|..+..++ ++|++|++++|.+
T Consensus 491 ~~L~~L~Ls~N--~l~~~iP~~l~~L~~L~~L~Ls~N~~l--------sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 491 KDLTDVELYNC--PNMTQLPDFLYDLPELQSLNIACNRGI--------SAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTCCEEEEESC--TTCCSCCGGGGGCSSCCEEECTTCTTS--------CHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CCCCEEECcCC--CCCccChHHHhCCCCCCEEECcCCCCc--------ccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 44555554443 3333456778888888888888776 5 44 5666655552 4788888888888
Q ss_pred CCCCC--CC-CCCCceEEEcCCCCcccccccccccccccccceecc--cCCcccCC-CCCCCC-CcEEEcccCCCcccCc
Q 005709 328 KTLPF--SF-EPNYLIELNLPYSKVEQIWIGEKKAFKLKFINLYNS--RYLTRLPE-FSEIPN-LERINLSGSELERLPA 400 (681)
Q Consensus 328 ~~lp~--~~-~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~~L~l--~~l~~lp~-~~~l~~-L~~L~L~~n~l~~lp~ 400 (681)
+.+|. .+ .+++|++|+|++|.++.+| .+.. +++|+.|++ +.+..+|. +..+++ |+.|+|++|.++.+|.
T Consensus 561 ~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~---L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~ 636 (876)
T 4ecn_A 561 EEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGT---NVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPN 636 (876)
T ss_dssp CBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCT---TSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCS
T ss_pred CccCChhhhhcCCCCCEEECCCCCcccch-hhcC---CCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCch
Confidence 88887 66 7888888888888888777 6666 888888888 67777885 788887 8888888888888887
Q ss_pred cccCCCc--cceeccccccccCcCCCC--------CCCCCEEeccCCCCCcccCCCC----CCccEEecccccccccccc
Q 005709 401 TIKQFSQ--LRYLYLRNCNMLQSLPEL--------PLLLSHLDASNCKRLQSLPEIS----SCLEELDISILEKLSKTTF 466 (681)
Q Consensus 401 ~i~~L~~--L~~L~L~~c~~l~~lp~~--------l~~L~~L~l~~c~~l~~lp~~~----~~L~~L~l~~n~l~~~~~~ 466 (681)
.+..++. |+.|++++|...+.+|.. +++|+.|++++| .+..+|..+ .+|+.|+|++|.+..+|..
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~ 715 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNNLMTSIPEN 715 (876)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSCCCSCCCTT
T ss_pred hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCCcCCccChH
Confidence 7766654 777777776544443322 235666666664 344555432 2566666666666655554
Q ss_pred cccCC-------CCCcEEEccCCc
Q 005709 467 PIKHG-------CSLMQFEFQNCW 483 (681)
Q Consensus 467 ~l~~l-------~~L~~L~l~~c~ 483 (681)
.+... ++|+.|+|++|.
T Consensus 716 ~~~~~~~~l~nl~~L~~L~Ls~N~ 739 (876)
T 4ecn_A 716 SLKPKDGNYKNTYLLTTIDLRFNK 739 (876)
T ss_dssp SSSCTTSCCTTGGGCCEEECCSSC
T ss_pred HhccccccccccCCccEEECCCCC
Confidence 22221 256666665553
No 13
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=3.3e-19 Score=195.35 Aligned_cols=207 Identities=17% Similarity=0.185 Sum_probs=172.8
Q ss_pred eecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCC-C-CCCCce
Q 005709 263 FDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFS-F-EPNYLI 340 (681)
Q Consensus 263 l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~ 340 (681)
++++.+....+.+..|.++++|+.|++++|.+ ....+..+..+ ++|++|++++|.++.+|.. | .+++|+
T Consensus 69 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i--------~~i~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 139 (440)
T 3zyj_A 69 LNLHENQIQIIKVNSFKHLRHLEILQLSRNHI--------RTIEIGAFNGL-ANLNTLELFDNRLTTIPNGAFVYLSKLK 139 (440)
T ss_dssp EECCSCCCCEECTTTTSSCSSCCEEECCSSCC--------CEECGGGGTTC-SSCCEEECCSSCCSSCCTTTSCSCSSCC
T ss_pred EEccCCcCCeeCHHHhhCCCCCCEEECCCCcC--------CccChhhccCC-ccCCEEECCCCcCCeeCHhHhhccccCc
Confidence 45555555667788999999999999999986 33334556666 7899999999999999885 5 899999
Q ss_pred EEEcCCCCcccccc-cccccccccccceecc---cCCcccCC--CCCCCCCcEEEcccCCCcccCccccCCCccceeccc
Q 005709 341 ELNLPYSKVEQIWI-GEKKAFKLKFINLYNS---RYLTRLPE--FSEIPNLERINLSGSELERLPATIKQFSQLRYLYLR 414 (681)
Q Consensus 341 ~L~L~~n~l~~lp~-~~~~l~~L~~L~~L~l---~~l~~lp~--~~~l~~L~~L~L~~n~l~~lp~~i~~L~~L~~L~L~ 414 (681)
+|+|++|.++.+|. .+.. +++|+.|++ +.+..+|. |.++++|++|+|++|.++.+| .+..+++|+.|+|+
T Consensus 140 ~L~L~~N~i~~~~~~~~~~---l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls 215 (440)
T 3zyj_A 140 ELWLRNNPIESIPSYAFNR---IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLS 215 (440)
T ss_dssp EEECCSCCCCEECTTTTTT---CTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECT
T ss_pred eeeCCCCcccccCHHHhhh---CcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECC
Confidence 99999999998876 4666 999999999 56777774 899999999999999999998 48999999999999
Q ss_pred cccccCcCCC-C---CCCCCEEeccCCCCCcccC-CCCC---CccEEecccccccccccccccCCCCCcEEEccCCcc
Q 005709 415 NCNMLQSLPE-L---PLLLSHLDASNCKRLQSLP-EISS---CLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCWE 484 (681)
Q Consensus 415 ~c~~l~~lp~-~---l~~L~~L~l~~c~~l~~lp-~~~~---~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~~ 484 (681)
+| .+..++. . +++|+.|++++|. +..++ ..+. +|+.|+|++|.++.+++..+..+++|+.|++++|+.
T Consensus 216 ~N-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 216 GN-HLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TS-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CC-ccCccChhhhccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 96 5666643 3 7899999999964 55554 3333 999999999999999998889999999999998874
No 14
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=2.8e-19 Score=196.64 Aligned_cols=212 Identities=17% Similarity=0.121 Sum_probs=174.5
Q ss_pred cEEEEEeecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCC-C-
Q 005709 257 AIEGIFFDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFS-F- 334 (681)
Q Consensus 257 ~v~~l~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~- 334 (681)
.++. |+++.+....+.+..|.++++|+.|++++|.+ ....+..+..+ ++|++|++++|.++.+|.. |
T Consensus 76 ~l~~--L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i--------~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~ 144 (452)
T 3zyi_A 76 NTRY--LNLMENNIQMIQADTFRHLHHLEVLQLGRNSI--------RQIEVGAFNGL-ASLNTLELFDNWLTVIPSGAFE 144 (452)
T ss_dssp TCSE--EECCSSCCCEECTTTTTTCTTCCEEECCSSCC--------CEECTTTTTTC-TTCCEEECCSSCCSBCCTTTSS
T ss_pred CccE--EECcCCcCceECHHHcCCCCCCCEEECCCCcc--------CCcChhhccCc-ccCCEEECCCCcCCccChhhhc
Confidence 4444 45566666667788999999999999999986 34444666667 7899999999999999887 5
Q ss_pred CCCCceEEEcCCCCcccccc-cccccccccccceecc---cCCcccCC--CCCCCCCcEEEcccCCCcccCccccCCCcc
Q 005709 335 EPNYLIELNLPYSKVEQIWI-GEKKAFKLKFINLYNS---RYLTRLPE--FSEIPNLERINLSGSELERLPATIKQFSQL 408 (681)
Q Consensus 335 ~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~~L~l---~~l~~lp~--~~~l~~L~~L~L~~n~l~~lp~~i~~L~~L 408 (681)
.+++|++|+|++|.++.+|. .+.. +++|+.|++ +.++.+|. |.++++|++|+|++|.++.+| .+..+++|
T Consensus 145 ~l~~L~~L~L~~N~l~~~~~~~~~~---l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L 220 (452)
T 3zyi_A 145 YLSKLRELWLRNNPIESIPSYAFNR---VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGL 220 (452)
T ss_dssp SCTTCCEEECCSCCCCEECTTTTTT---CTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTC
T ss_pred ccCCCCEEECCCCCcceeCHhHHhc---CCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccc
Confidence 79999999999999998876 4566 999999999 56777774 899999999999999999997 58999999
Q ss_pred ceeccccccccCcCCCC----CCCCCEEeccCCCCCcccCCCCC---CccEEecccccccccccccccCCCCCcEEEccC
Q 005709 409 RYLYLRNCNMLQSLPEL----PLLLSHLDASNCKRLQSLPEISS---CLEELDISILEKLSKTTFPIKHGCSLMQFEFQN 481 (681)
Q Consensus 409 ~~L~L~~c~~l~~lp~~----l~~L~~L~l~~c~~l~~lp~~~~---~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 481 (681)
+.|+|++|. +..++.. +++|+.|++++|......|..+. +|+.|+|++|.++.+++..+..+++|+.|++++
T Consensus 221 ~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 221 EELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299 (452)
T ss_dssp CEEECTTSC-CSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCS
T ss_pred cEEECcCCc-CcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccC
Confidence 999999954 5555432 78999999999654433344443 999999999999999998789999999999998
Q ss_pred Ccc
Q 005709 482 CWE 484 (681)
Q Consensus 482 c~~ 484 (681)
|+.
T Consensus 300 Np~ 302 (452)
T 3zyi_A 300 NPW 302 (452)
T ss_dssp SCE
T ss_pred CCc
Confidence 863
No 15
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.81 E-value=8.4e-20 Score=214.12 Aligned_cols=208 Identities=19% Similarity=0.188 Sum_probs=154.1
Q ss_pred ecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCC-CCCCCC-CCCCceE
Q 005709 264 DLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLK-TLPFSF-EPNYLIE 341 (681)
Q Consensus 264 ~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~-~lp~~~-~l~~L~~ 341 (681)
+++.+......+..|.++++|+.|++++|.+ .+.+|..+..+ ++|++|++++|.++ .+|..+ .+++|++
T Consensus 400 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l--------~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 470 (768)
T 3rgz_A 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYL--------SGTIPSSLGSL-SKLRDLKLWLNMLEGEIPQELMYVKTLET 470 (768)
T ss_dssp ECCSSEEEEECCGGGGGCTTCCEEECCSSEE--------ESCCCGGGGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred ECCCCccccccCHHHhcCCCCCEEECcCCcc--------cCcccHHHhcC-CCCCEEECCCCcccCcCCHHHcCCCCceE
Confidence 3444444445677788888888888888775 55677777777 67888888888887 567777 7888888
Q ss_pred EEcCCCCcc-cccccccccccccccceecc--cCCc-ccCC-CCCCCCCcEEEcccCCCc-ccCccccCCCccceecccc
Q 005709 342 LNLPYSKVE-QIWIGEKKAFKLKFINLYNS--RYLT-RLPE-FSEIPNLERINLSGSELE-RLPATIKQFSQLRYLYLRN 415 (681)
Q Consensus 342 L~L~~n~l~-~lp~~~~~l~~L~~L~~L~l--~~l~-~lp~-~~~l~~L~~L~L~~n~l~-~lp~~i~~L~~L~~L~L~~ 415 (681)
|++++|.++ .+|..+.. +++|++|++ +.+. .+|. ++.+++|++|+|++|.+. .+|..++++++|+.|++++
T Consensus 471 L~L~~N~l~~~~p~~l~~---l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 547 (768)
T 3rgz_A 471 LILDFNDLTGEIPSGLSN---CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547 (768)
T ss_dssp EECCSSCCCSCCCGGGGG---CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCS
T ss_pred EEecCCcccCcCCHHHhc---CCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCC
Confidence 888888887 56777777 888888888 5555 6675 888888888888888887 6788888888888888888
Q ss_pred ccccCcCCCC----------------------------------------------------------------------
Q 005709 416 CNMLQSLPEL---------------------------------------------------------------------- 425 (681)
Q Consensus 416 c~~l~~lp~~---------------------------------------------------------------------- 425 (681)
|...+.+|..
T Consensus 548 N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~ 627 (768)
T 3rgz_A 548 NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627 (768)
T ss_dssp SEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCS
T ss_pred CccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchh
Confidence 7766566632
Q ss_pred ---CCCCCEEeccCCCCCcccCCCCC---CccEEecccccccccccccccCCCCCcEEEccCCc
Q 005709 426 ---PLLLSHLDASNCKRLQSLPEISS---CLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 426 ---l~~L~~L~l~~c~~l~~lp~~~~---~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~ 483 (681)
+++|+.|++++|...+.+|..++ +|+.|+|++|.+++..+..++++++|+.|++++|.
T Consensus 628 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691 (768)
T ss_dssp CSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred hhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCc
Confidence 24567777777666667776665 67777777777774444447777777777776665
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.80 E-value=1.2e-20 Score=221.29 Aligned_cols=216 Identities=18% Similarity=0.208 Sum_probs=180.4
Q ss_pred CCcEEEEEeecCCCcccc---------------cCHHHhc--CCCCCceEEEeCCCCCCCcccccccccCccccccccCc
Q 005709 255 TDAIEGIFFDLSKINYLH---------------LSPQAFA--NMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKL 317 (681)
Q Consensus 255 ~~~v~~l~l~~~~~~~~~---------------~~~~~f~--~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L 317 (681)
..+++.+.+..+...... ..|..+. ++++|+.|++++|.+ .+.+|..+..+ ++|
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l--------~~~iP~~l~~L-~~L 517 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN--------MTQLPDFLYDL-PEL 517 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT--------CCSCCGGGGGC-SSC
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC--------CccChHHHhCC-CCC
Confidence 346676666655543310 1355555 999999999999987 78899999998 799
Q ss_pred cEEEecCCC-CCC--CCCCC--------CCCCceEEEcCCCCcccccc--cccccccccccceecc--cCCcccCCCCCC
Q 005709 318 RYLHWHEYP-LKT--LPFSF--------EPNYLIELNLPYSKVEQIWI--GEKKAFKLKFINLYNS--RYLTRLPEFSEI 382 (681)
Q Consensus 318 ~~L~l~~~~-l~~--lp~~~--------~l~~L~~L~L~~n~l~~lp~--~~~~l~~L~~L~~L~l--~~l~~lp~~~~l 382 (681)
++|++++|. ++. +|..+ .+++|++|+|++|.++.+|. .+.. +++|+.|++ +.+..+|.++.+
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~---L~~L~~L~Ls~N~l~~lp~~~~L 594 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQK---MVKLGLLDCVHNKVRHLEAFGTN 594 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTT---CTTCCEEECTTSCCCBCCCCCTT
T ss_pred CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhc---CCCCCEEECCCCCcccchhhcCC
Confidence 999999998 885 77654 44599999999999999998 8888 999999999 788899999999
Q ss_pred CCCcEEEcccCCCcccCccccCCCc-cceeccccccccCcCCCC---C--CCCCEEeccCCCCCcccCCCC--------C
Q 005709 383 PNLERINLSGSELERLPATIKQFSQ-LRYLYLRNCNMLQSLPEL---P--LLLSHLDASNCKRLQSLPEIS--------S 448 (681)
Q Consensus 383 ~~L~~L~L~~n~l~~lp~~i~~L~~-L~~L~L~~c~~l~~lp~~---l--~~L~~L~l~~c~~l~~lp~~~--------~ 448 (681)
++|+.|+|++|.++.+|.+++++++ |+.|++++|. +..+|.. + ++|+.|++++|...+.+|... .
T Consensus 595 ~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~ 673 (876)
T 4ecn_A 595 VKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673 (876)
T ss_dssp SEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred CcceEEECcCCccccchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence 9999999999999999999999999 9999999955 6789976 2 349999999986655555432 1
Q ss_pred CccEEecccccccccccccccCCCCCcEEEccCCc
Q 005709 449 CLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 449 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~ 483 (681)
+|+.|++++|.+..+|...+..+++|+.|+|++|.
T Consensus 674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~ 708 (876)
T 4ecn_A 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708 (876)
T ss_dssp CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC
T ss_pred CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc
Confidence 89999999999999998855689999999999986
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.80 E-value=6.8e-20 Score=201.53 Aligned_cols=214 Identities=17% Similarity=0.206 Sum_probs=148.3
Q ss_pred CcEEEEEeecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccC-ccccccccCccEEEecCCCCCCC-CCC
Q 005709 256 DAIEGIFFDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLN-QDLEYLPKKLRYLHWHEYPLKTL-PFS 333 (681)
Q Consensus 256 ~~v~~l~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~-~~l~~l~~~L~~L~l~~~~l~~l-p~~ 333 (681)
..++.+ +++.+....+.+..|.++++|++|++++|.. ...++ ..+..+ ++|++|++++|.++.+ |..
T Consensus 30 ~~l~~L--~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~--------~~~i~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~ 98 (455)
T 3v47_A 30 AHVNYV--DLSLNSIAELNETSFSRLQDLQFLKVEQQTP--------GLVIRNNTFRGL-SSLIILKLDYNQFLQLETGA 98 (455)
T ss_dssp TTCCEE--ECCSSCCCEECTTTTSSCTTCCEEECCCCST--------TCEECTTTTTTC-TTCCEEECTTCTTCEECTTT
T ss_pred CccCEE--EecCCccCcCChhHhccCccccEEECcCCcc--------cceECccccccc-ccCCEEeCCCCccCccChhh
Confidence 345554 4555555567788999999999999998875 44554 446666 7899999999999886 556
Q ss_pred C-CCCCceEEEcCCCCccc-cccc--ccccccccccceecc--cCCccc-CC--CCCCCCCcEEEcccCCCcccC-cccc
Q 005709 334 F-EPNYLIELNLPYSKVEQ-IWIG--EKKAFKLKFINLYNS--RYLTRL-PE--FSEIPNLERINLSGSELERLP-ATIK 403 (681)
Q Consensus 334 ~-~l~~L~~L~L~~n~l~~-lp~~--~~~l~~L~~L~~L~l--~~l~~l-p~--~~~l~~L~~L~L~~n~l~~lp-~~i~ 403 (681)
+ ++++|++|+|++|.++. +|.. +.. +++|++|++ +.+..+ |. ++++++|++|++++|.++.++ ..+.
T Consensus 99 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~---l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 175 (455)
T 3v47_A 99 FNGLANLEVLTLTQCNLDGAVLSGNFFKP---LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLL 175 (455)
T ss_dssp TTTCTTCCEEECTTSCCBTHHHHSSTTTT---CTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSG
T ss_pred ccCcccCCEEeCCCCCCCccccCcccccC---cccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhh
Confidence 7 89999999999999985 3443 666 999999999 777776 54 789999999999999888653 3454
Q ss_pred CC----------------------------------CccceeccccccccCcCCCC------------------------
Q 005709 404 QF----------------------------------SQLRYLYLRNCNMLQSLPEL------------------------ 425 (681)
Q Consensus 404 ~L----------------------------------~~L~~L~L~~c~~l~~lp~~------------------------ 425 (681)
++ ++|++|++++|...+.+|..
T Consensus 176 ~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 255 (455)
T 3v47_A 176 NFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS 255 (455)
T ss_dssp GGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC
T ss_pred ccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc
Confidence 44 55666666665322211110
Q ss_pred ------------------CCCCCEEeccCCCCCcccCCCCC---CccEEecccccccccccccccCCCCCcEEEccCCc
Q 005709 426 ------------------PLLLSHLDASNCKRLQSLPEISS---CLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 426 ------------------l~~L~~L~l~~c~~l~~lp~~~~---~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~ 483 (681)
.++|+.|++++|...+..|..+. +|+.|++++|.+.++++..+.++++|+.|++++|.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 334 (455)
T 3v47_A 256 FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334 (455)
T ss_dssp TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc
Confidence 13566666666544444444443 66777777777766665556667777777776664
No 18
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.80 E-value=2.4e-19 Score=198.48 Aligned_cols=212 Identities=18% Similarity=0.182 Sum_probs=165.1
Q ss_pred CcEEEEEeecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCcc-ccccccCccEEEecCCCCCCCCC-C
Q 005709 256 DAIEGIFFDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQD-LEYLPKKLRYLHWHEYPLKTLPF-S 333 (681)
Q Consensus 256 ~~v~~l~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~-l~~l~~~L~~L~l~~~~l~~lp~-~ 333 (681)
..++.+ +++.+....+.+.+|.++++|++|++++|.+ ..+|.. +..+ ++|++|++++|.+..+++ .
T Consensus 56 ~~L~~L--~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l---------~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~ 123 (477)
T 2id5_A 56 PHLEEL--ELNENIVSAVEPGAFNNLFNLRTLGLRSNRL---------KLIPLGVFTGL-SNLTKLDISENKIVILLDYM 123 (477)
T ss_dssp TTCCEE--ECTTSCCCEECTTTTTTCTTCCEEECCSSCC---------CSCCTTSSTTC-TTCCEEECTTSCCCEECTTT
T ss_pred CCCCEE--ECCCCccCEeChhhhhCCccCCEEECCCCcC---------CccCcccccCC-CCCCEEECCCCccccCChhH
Confidence 345554 4455555567788999999999999999885 345543 4555 789999999999988654 4
Q ss_pred C-CCCCceEEEcCCCCccccc-ccccccccccccceecc--cCCcccCC--CCCCCCCcEEEcccCCCcccCc-cccCCC
Q 005709 334 F-EPNYLIELNLPYSKVEQIW-IGEKKAFKLKFINLYNS--RYLTRLPE--FSEIPNLERINLSGSELERLPA-TIKQFS 406 (681)
Q Consensus 334 ~-~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~~L~l--~~l~~lp~--~~~l~~L~~L~L~~n~l~~lp~-~i~~L~ 406 (681)
| .+++|++|+|++|.++.++ ..+.. +++|+.|++ +.++.+|. ++.+++|+.|++++|.+..++. .+..++
T Consensus 124 ~~~l~~L~~L~l~~n~l~~~~~~~~~~---l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~ 200 (477)
T 2id5_A 124 FQDLYNLKSLEVGDNDLVYISHRAFSG---LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY 200 (477)
T ss_dssp TTTCTTCCEEEECCTTCCEECTTSSTT---CTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCT
T ss_pred ccccccCCEEECCCCccceeChhhccC---CCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCc
Confidence 6 8999999999999998764 46666 899999999 77888884 8899999999999999987765 588999
Q ss_pred ccceeccccccccCcCCCC---CCCCCEEeccCCCCCcccCC----CCCCccEEecccccccccccccccCCCCCcEEEc
Q 005709 407 QLRYLYLRNCNMLQSLPEL---PLLLSHLDASNCKRLQSLPE----ISSCLEELDISILEKLSKTTFPIKHGCSLMQFEF 479 (681)
Q Consensus 407 ~L~~L~L~~c~~l~~lp~~---l~~L~~L~l~~c~~l~~lp~----~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 479 (681)
+|+.|++++|+.+..+|.. ..+|+.|++++| .+..+|. .+.+|+.|++++|.+..+++..+..+++|+.|++
T Consensus 201 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 279 (477)
T 2id5_A 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQL 279 (477)
T ss_dssp TCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEEC
T ss_pred ccceeeCCCCccccccCcccccCccccEEECcCC-cccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEEC
Confidence 9999999998888888765 447888888875 4556663 2337788888888877777766777777777777
Q ss_pred cCCc
Q 005709 480 QNCW 483 (681)
Q Consensus 480 ~~c~ 483 (681)
++|.
T Consensus 280 ~~n~ 283 (477)
T 2id5_A 280 VGGQ 283 (477)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 7764
No 19
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=6.4e-20 Score=191.65 Aligned_cols=215 Identities=18% Similarity=0.165 Sum_probs=178.5
Q ss_pred CcEEEEEeecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCC-CCCCCC
Q 005709 256 DAIEGIFFDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLK-TLPFSF 334 (681)
Q Consensus 256 ~~v~~l~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~-~lp~~~ 334 (681)
..++.+.+.. .+......|..|.++++|++|++++|.+ .+.+|..+..+ ++|++|++++|.++ .+|..+
T Consensus 76 ~~L~~L~L~~-~n~l~~~~p~~l~~l~~L~~L~Ls~n~l--------~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~ 145 (313)
T 1ogq_A 76 PYLNFLYIGG-INNLVGPIPPAIAKLTQLHYLYITHTNV--------SGAIPDFLSQI-KTLVTLDFSYNALSGTLPPSI 145 (313)
T ss_dssp TTCSEEEEEE-ETTEESCCCGGGGGCTTCSEEEEEEECC--------EEECCGGGGGC-TTCCEEECCSSEEESCCCGGG
T ss_pred CCCCeeeCCC-CCcccccCChhHhcCCCCCEEECcCCee--------CCcCCHHHhCC-CCCCEEeCCCCccCCcCChHH
Confidence 4556555552 1223334577899999999999999986 66888888888 79999999999998 688888
Q ss_pred -CCCCceEEEcCCCCcc-ccccccccccccc-ccceecc--cCCc-ccCC-CCCCCCCcEEEcccCCCcc-cCccccCCC
Q 005709 335 -EPNYLIELNLPYSKVE-QIWIGEKKAFKLK-FINLYNS--RYLT-RLPE-FSEIPNLERINLSGSELER-LPATIKQFS 406 (681)
Q Consensus 335 -~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~-~L~~L~l--~~l~-~lp~-~~~l~~L~~L~L~~n~l~~-lp~~i~~L~ 406 (681)
.+++|++|++++|.++ .+|..+.. ++ +|+.|++ +.+. .+|. ++.+. |++|++++|.++. +|..++.++
T Consensus 146 ~~l~~L~~L~L~~N~l~~~~p~~l~~---l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~ 221 (313)
T 1ogq_A 146 SSLPNLVGITFDGNRISGAIPDSYGS---FSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDK 221 (313)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGC---CCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTS
T ss_pred hcCCCCCeEECcCCcccCcCCHHHhh---hhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCC
Confidence 9999999999999998 88988888 87 9999999 6665 5675 88887 9999999999984 566799999
Q ss_pred ccceeccccccccCcCCCC--CCCCCEEeccCCCCCcccCCCCC---CccEEecccccccccccccccCCCCCcEEEccC
Q 005709 407 QLRYLYLRNCNMLQSLPEL--PLLLSHLDASNCKRLQSLPEISS---CLEELDISILEKLSKTTFPIKHGCSLMQFEFQN 481 (681)
Q Consensus 407 ~L~~L~L~~c~~l~~lp~~--l~~L~~L~l~~c~~l~~lp~~~~---~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 481 (681)
+|+.|++++|...+.+|.. +++|++|++++|...+.+|..+. +|+.|++++|.+.+..+. ...+++|+.|++++
T Consensus 222 ~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~l~l~~ 300 (313)
T 1ogq_A 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYAN 300 (313)
T ss_dssp CCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCS
T ss_pred CCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC-CccccccChHHhcC
Confidence 9999999997655555543 78999999999876668888766 899999999999976666 58899999999998
Q ss_pred Cccc
Q 005709 482 CWEL 485 (681)
Q Consensus 482 c~~L 485 (681)
|+.+
T Consensus 301 N~~l 304 (313)
T 1ogq_A 301 NKCL 304 (313)
T ss_dssp SSEE
T ss_pred CCCc
Confidence 8754
No 20
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.79 E-value=8.8e-19 Score=188.77 Aligned_cols=209 Identities=16% Similarity=0.131 Sum_probs=131.9
Q ss_pred cEEEEEeecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCC-C-
Q 005709 257 AIEGIFFDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFS-F- 334 (681)
Q Consensus 257 ~v~~l~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~- 334 (681)
.++.+.+.. +....+++..|.++++|++|++++|.+ ....+..+..+ ++|++|++++|.++.+|+. +
T Consensus 46 ~l~~l~l~~--~~l~~l~~~~~~~l~~L~~L~L~~n~i--------~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~ 114 (390)
T 3o6n_A 46 NQKIVTFKN--STMRKLPAALLDSFRQVELLNLNDLQI--------EEIDTYAFAYA-HTIQKLYMGFNAIRYLPPHVFQ 114 (390)
T ss_dssp CCSEEEEES--CEESEECTHHHHHCCCCSEEECTTSCC--------CEECTTTTTTC-TTCCEEECCSSCCCCCCTTTTT
T ss_pred CceEEEecC--CchhhCChhHhcccccCcEEECCCCcc--------cccChhhccCC-CCcCEEECCCCCCCcCCHHHhc
Confidence 344444433 334445666777788888888877764 22223345555 6777777777777776655 4
Q ss_pred CCCCceEEEcCCCCcccccccc-cccccccccceecc--cCCcccCC--CCCCCCCcEEEcccCCCcccCccccCCCc--
Q 005709 335 EPNYLIELNLPYSKVEQIWIGE-KKAFKLKFINLYNS--RYLTRLPE--FSEIPNLERINLSGSELERLPATIKQFSQ-- 407 (681)
Q Consensus 335 ~l~~L~~L~L~~n~l~~lp~~~-~~l~~L~~L~~L~l--~~l~~lp~--~~~l~~L~~L~L~~n~l~~lp~~i~~L~~-- 407 (681)
.+++|++|++++|.++.+|..+ .. +++|++|++ +.+..++. ++.+++|++|++++|.++.++ ++.+++
T Consensus 115 ~l~~L~~L~L~~n~l~~l~~~~~~~---l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~ 189 (390)
T 3o6n_A 115 NVPLLTVLVLERNDLSSLPRGIFHN---TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLF 189 (390)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTT---CTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCS
T ss_pred CCCCCCEEECCCCccCcCCHHHhcC---CCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccc
Confidence 7777777777777777777653 55 777777777 56666653 777777777777777776553 222222
Q ss_pred --------------------------------------cceeccccccccCcCCCC--CCCCCEEeccCCCCCcccCCCC
Q 005709 408 --------------------------------------LRYLYLRNCNMLQSLPEL--PLLLSHLDASNCKRLQSLPEIS 447 (681)
Q Consensus 408 --------------------------------------L~~L~L~~c~~l~~lp~~--l~~L~~L~l~~c~~l~~lp~~~ 447 (681)
|+.|++++| .+...+.. +++|++|++++|...+..|..+
T Consensus 190 ~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (390)
T 3o6n_A 190 HANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHN-NLTDTAWLLNYPGLVEVDLSYNELEKIMYHPF 268 (390)
T ss_dssp EEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred eeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCC-CCcccHHHcCCCCccEEECCCCcCCCcChhHc
Confidence 333333332 12222211 5677788887764333335444
Q ss_pred C---CccEEecccccccccccccccCCCCCcEEEccCCc
Q 005709 448 S---CLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 448 ~---~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~ 483 (681)
. +|+.|++++|.+.+++.. +..+++|+.|++++|.
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~L~~n~ 306 (390)
T 3o6n_A 269 VKMQRLERLYISNNRLVALNLY-GQPIPTLKVLDLSHNH 306 (390)
T ss_dssp TTCSSCCEEECCSSCCCEEECS-SSCCTTCCEEECCSSC
T ss_pred cccccCCEEECCCCcCcccCcc-cCCCCCCCEEECCCCc
Confidence 3 788888888888887776 6778888888888775
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=8.1e-19 Score=199.85 Aligned_cols=205 Identities=17% Similarity=0.139 Sum_probs=138.5
Q ss_pred ecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCC-C-CCCCceE
Q 005709 264 DLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFS-F-EPNYLIE 341 (681)
Q Consensus 264 ~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~ 341 (681)
+++.+....+++..|.++++|++|++++|.+ ....|..+..+ ++|++|++++|.++.+|+. | .+++|++
T Consensus 57 ~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l--------~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 57 TFKNSTMRKLPAALLDSFRQVELLNLNDLQI--------EEIDTYAFAYA-HTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp EESSCEESEECTHHHHHCCCCSEEECTTSCC--------CEECTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred EeeCCCCCCcCHHHHccCCCCcEEECCCCCC--------CCCChHHhcCC-CCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 3444445556777788888888888887775 33334455555 6788888888888877765 4 7888888
Q ss_pred EEcCCCCcccccccc-cccccccccceecc--cCCcccCC--CCCCCCCcEEEcccCCCcccCccccCCCccc-------
Q 005709 342 LNLPYSKVEQIWIGE-KKAFKLKFINLYNS--RYLTRLPE--FSEIPNLERINLSGSELERLPATIKQFSQLR------- 409 (681)
Q Consensus 342 L~L~~n~l~~lp~~~-~~l~~L~~L~~L~l--~~l~~lp~--~~~l~~L~~L~L~~n~l~~lp~~i~~L~~L~------- 409 (681)
|+|++|.++.+|..+ .. +++|++|++ +.+..+|. |+++++|++|++++|.++.+| ++.+++|+
T Consensus 128 L~L~~n~l~~l~~~~~~~---l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHN---TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYN 202 (597)
T ss_dssp EECCSSCCCCCCTTTTTT---CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSS
T ss_pred EEeeCCCCCCCCHHHhcc---CCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccC
Confidence 888888888777664 56 788888888 66666653 778888888888877777654 22233333
Q ss_pred ---------------------------------eeccccccccCcCCCC--CCCCCEEeccCCCCCcccCCCCC---Ccc
Q 005709 410 ---------------------------------YLYLRNCNMLQSLPEL--PLLLSHLDASNCKRLQSLPEISS---CLE 451 (681)
Q Consensus 410 ---------------------------------~L~L~~c~~l~~lp~~--l~~L~~L~l~~c~~l~~lp~~~~---~L~ 451 (681)
.|++++|. +...+.. +++|+.|++++|...+..|..++ +|+
T Consensus 203 ~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~-l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 281 (597)
T 3oja_B 203 LLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNN-LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 281 (597)
T ss_dssp CCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCC
T ss_pred ccccccCCchhheeeccCCcccccccccCCCCCEEECCCCC-CCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCC
Confidence 33333321 2221111 66788888887654444455544 788
Q ss_pred EEecccccccccccccccCCCCCcEEEccCCcc
Q 005709 452 ELDISILEKLSKTTFPIKHGCSLMQFEFQNCWE 484 (681)
Q Consensus 452 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~~ 484 (681)
.|+|++|.+.++|.. +..+++|+.|++++|..
T Consensus 282 ~L~Ls~N~l~~l~~~-~~~l~~L~~L~Ls~N~l 313 (597)
T 3oja_B 282 RLYISNNRLVALNLY-GQPIPTLKVLDLSHNHL 313 (597)
T ss_dssp EEECTTSCCCEEECS-SSCCTTCCEEECCSSCC
T ss_pred EEECCCCCCCCCCcc-cccCCCCcEEECCCCCC
Confidence 888888888888776 67788888888888763
No 22
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=1.3e-19 Score=192.56 Aligned_cols=211 Identities=19% Similarity=0.165 Sum_probs=169.1
Q ss_pred cEEEEEeecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCC-C-
Q 005709 257 AIEGIFFDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFS-F- 334 (681)
Q Consensus 257 ~v~~l~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~- 334 (681)
.++.+ +++.+....+.+..|.++++|+.|++++|.+ ....+..+..+ ++|++|++++|.++.+|.. +
T Consensus 53 ~L~~L--~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l--------~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~ 121 (353)
T 2z80_A 53 AVKSL--DLSNNRITYISNSDLQRCVNLQALVLTSNGI--------NTIEEDSFSSL-GSLEHLDLSYNYLSNLSSSWFK 121 (353)
T ss_dssp TCCEE--ECTTSCCCEECTTTTTTCTTCCEEECTTSCC--------CEECTTTTTTC-TTCCEEECCSSCCSSCCHHHHT
T ss_pred cCcEE--ECCCCcCcccCHHHhccCCCCCEEECCCCcc--------CccCHhhcCCC-CCCCEEECCCCcCCcCCHhHhC
Confidence 45555 4455555566777899999999999999886 34445567777 7899999999999999987 5
Q ss_pred CCCCceEEEcCCCCcccccc--cccccccccccceecc--c-CCcccC-C-CCCCCCCcEEEcccCCCccc-CccccCCC
Q 005709 335 EPNYLIELNLPYSKVEQIWI--GEKKAFKLKFINLYNS--R-YLTRLP-E-FSEIPNLERINLSGSELERL-PATIKQFS 406 (681)
Q Consensus 335 ~l~~L~~L~L~~n~l~~lp~--~~~~l~~L~~L~~L~l--~-~l~~lp-~-~~~l~~L~~L~L~~n~l~~l-p~~i~~L~ 406 (681)
.+++|++|++++|.++.+|. .+.. +++|++|++ + .++.++ . ++++++|++|++++|.++.+ |..+++++
T Consensus 122 ~l~~L~~L~L~~n~l~~l~~~~~~~~---l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 198 (353)
T 2z80_A 122 PLSSLTFLNLLGNPYKTLGETSLFSH---LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ 198 (353)
T ss_dssp TCTTCSEEECTTCCCSSSCSSCSCTT---CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS
T ss_pred CCccCCEEECCCCCCcccCchhhhcc---CCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccc
Confidence 89999999999999999887 5667 999999999 4 477775 3 89999999999999999876 77899999
Q ss_pred ccceeccccccccCcCCCC----CCCCCEEeccCCCCCccc--------------------------------CCC---C
Q 005709 407 QLRYLYLRNCNMLQSLPEL----PLLLSHLDASNCKRLQSL--------------------------------PEI---S 447 (681)
Q Consensus 407 ~L~~L~L~~c~~l~~lp~~----l~~L~~L~l~~c~~l~~l--------------------------------p~~---~ 447 (681)
+|++|++++|. ++.+|.. +++|+.|++++|. +..+ |.. +
T Consensus 199 ~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l 276 (353)
T 2z80_A 199 NVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQI 276 (353)
T ss_dssp EEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCB-CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTC
T ss_pred cCCeecCCCCc-cccchhhhhhhcccccEEECCCCc-cccccccccccccccchhhccccccccccCcchhhhHHHHhcc
Confidence 99999999854 6666654 7889999999864 3332 222 2
Q ss_pred CCccEEecccccccccccccccCCCCCcEEEccCCc
Q 005709 448 SCLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 448 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~ 483 (681)
.+|+.|++++|.++.+|...++++++|++|++++|+
T Consensus 277 ~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 277 SGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 378899999999998888756888999988888875
No 23
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=5.3e-19 Score=183.89 Aligned_cols=215 Identities=20% Similarity=0.200 Sum_probs=169.0
Q ss_pred CcEEEEEeecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCC-
Q 005709 256 DAIEGIFFDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSF- 334 (681)
Q Consensus 256 ~~v~~l~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~- 334 (681)
..++.+.+ +.+....+++..|.++++|+.|++++|.+.. .+..+..+..+ ++|++|++++|.++.+|..+
T Consensus 28 ~~l~~L~L--~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~~~~-~~L~~L~Ls~n~i~~l~~~~~ 98 (306)
T 2z66_A 28 SSATRLEL--ESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF------KGCCSQSDFGT-TSLKYLDLSFNGVITMSSNFL 98 (306)
T ss_dssp TTCCEEEC--CSSCCCCCCTTTTTTCTTCSEEECCSSCCCE------EEEEEHHHHSC-SCCCEEECCSCSEEEEEEEEE
T ss_pred CCCCEEEC--CCCccCccCHhHhhccccCCEEECCCCccCc------ccCcccccccc-cccCEEECCCCccccChhhcC
Confidence 34555544 4444445677788999999999999887521 12234444555 78999999999999999888
Q ss_pred CCCCceEEEcCCCCcccccc--cccccccccccceecc--cCCcccC-C-CCCCCCCcEEEcccCCCcc--cCccccCCC
Q 005709 335 EPNYLIELNLPYSKVEQIWI--GEKKAFKLKFINLYNS--RYLTRLP-E-FSEIPNLERINLSGSELER--LPATIKQFS 406 (681)
Q Consensus 335 ~l~~L~~L~L~~n~l~~lp~--~~~~l~~L~~L~~L~l--~~l~~lp-~-~~~l~~L~~L~L~~n~l~~--lp~~i~~L~ 406 (681)
.+++|++|++++|.++.++. .+.. +++|++|++ +.+..++ . ++.+++|++|++++|.+.. +|..+..++
T Consensus 99 ~l~~L~~L~l~~n~l~~~~~~~~~~~---l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 175 (306)
T 2z66_A 99 GLEQLEHLDFQHSNLKQMSEFSVFLS---LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 175 (306)
T ss_dssp TCTTCCEEECTTSEEESSTTTTTTTT---CTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred CCCCCCEEECCCCcccccccchhhhh---ccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCc
Confidence 99999999999999998864 5666 999999999 6666554 4 8899999999999999885 788899999
Q ss_pred ccceeccccccccCcC-CCC---CCCCCEEeccCCCCCcccCC-CC---CCccEEecccccccccccccccCC-CCCcEE
Q 005709 407 QLRYLYLRNCNMLQSL-PEL---PLLLSHLDASNCKRLQSLPE-IS---SCLEELDISILEKLSKTTFPIKHG-CSLMQF 477 (681)
Q Consensus 407 ~L~~L~L~~c~~l~~l-p~~---l~~L~~L~l~~c~~l~~lp~-~~---~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L 477 (681)
+|++|++++|. +..+ |.. +++|+.|++++| .+..++. .+ .+|+.|++++|.+.+.++..+..+ ++|+.|
T Consensus 176 ~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L 253 (306)
T 2z66_A 176 NLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 253 (306)
T ss_dssp TCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEE
T ss_pred CCCEEECCCCC-cCCcCHHHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEE
Confidence 99999999964 5555 433 789999999996 4555554 33 389999999999998887768888 489999
Q ss_pred EccCCcc
Q 005709 478 EFQNCWE 484 (681)
Q Consensus 478 ~l~~c~~ 484 (681)
++++|+.
T Consensus 254 ~L~~N~~ 260 (306)
T 2z66_A 254 NLTQNDF 260 (306)
T ss_dssp ECTTCCE
T ss_pred EccCCCe
Confidence 9988763
No 24
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.78 E-value=5.9e-19 Score=201.33 Aligned_cols=118 Identities=19% Similarity=0.263 Sum_probs=84.2
Q ss_pred cceecc--cCCcccCC--CCCCCCCcEEEcccCCCcccCccccCCCccceeccccccccCcC-CCC---CCCCCEEeccC
Q 005709 365 INLYNS--RYLTRLPE--FSEIPNLERINLSGSELERLPATIKQFSQLRYLYLRNCNMLQSL-PEL---PLLLSHLDASN 436 (681)
Q Consensus 365 L~~L~l--~~l~~lp~--~~~l~~L~~L~L~~n~l~~lp~~i~~L~~L~~L~L~~c~~l~~l-p~~---l~~L~~L~l~~ 436 (681)
|+.|++ +.+..+|. |+.+++|++|++++|.++.+|..++++++|++|++++|. +..+ |.. +++|++|++++
T Consensus 256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANK-FENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCC-CSBGGGGCGGGCTTCSEEECCS
T ss_pred eeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCC-cCcCchhhhhccCcCCEEECCC
Confidence 344444 44555553 778888888888888888888888888888888888854 4444 322 77888888888
Q ss_pred CCCCcccCCC-CC---CccEEecccccccccc--cccccCCCCCcEEEccCCc
Q 005709 437 CKRLQSLPEI-SS---CLEELDISILEKLSKT--TFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 437 c~~l~~lp~~-~~---~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~l~~c~ 483 (681)
|.....+|.. +. +|++|++++|.+.+.+ +..+..+++|++|++++|.
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 387 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS
T ss_pred CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc
Confidence 7665566554 22 7888888888887764 3347788888888888775
No 25
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=4.3e-18 Score=175.17 Aligned_cols=191 Identities=16% Similarity=0.116 Sum_probs=157.6
Q ss_pred CCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCC-CCCC-CCCCceEEEcCCCC-cccc-cccc
Q 005709 281 MSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTL-PFSF-EPNYLIELNLPYSK-VEQI-WIGE 356 (681)
Q Consensus 281 l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~l-p~~~-~l~~L~~L~L~~n~-l~~l-p~~~ 356 (681)
.++|+.|++++|.+ ....+..+..+ ++|++|++++|.++.+ |..+ .+++|++|++++|. ++.+ |..+
T Consensus 31 ~~~l~~L~l~~n~i--------~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~ 101 (285)
T 1ozn_A 31 PAASQRIFLHGNRI--------SHVPAASFRAC-RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 101 (285)
T ss_dssp CTTCSEEECTTSCC--------CEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTT
T ss_pred CCCceEEEeeCCcC--------CccCHHHcccC-CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHh
Confidence 46899999998885 33233456666 7899999999999987 5556 89999999999997 8877 5667
Q ss_pred cccccccccceecc--cCCcccC-C-CCCCCCCcEEEcccCCCcccCcc-ccCCCccceeccccccccCcCCCC----CC
Q 005709 357 KKAFKLKFINLYNS--RYLTRLP-E-FSEIPNLERINLSGSELERLPAT-IKQFSQLRYLYLRNCNMLQSLPEL----PL 427 (681)
Q Consensus 357 ~~l~~L~~L~~L~l--~~l~~lp-~-~~~l~~L~~L~L~~n~l~~lp~~-i~~L~~L~~L~L~~c~~l~~lp~~----l~ 427 (681)
.. +++|++|++ +.+..++ . ++++++|++|++++|.++.+|.. ++++++|++|++++| .++.+|.. ++
T Consensus 102 ~~---l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~ 177 (285)
T 1ozn_A 102 HG---LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLH 177 (285)
T ss_dssp TT---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCT
T ss_pred cC---CcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC-cccccCHHHhcCcc
Confidence 77 999999999 7777775 3 88999999999999999988765 889999999999995 57777763 78
Q ss_pred CCCEEeccCCCCCcccCCCCC---CccEEecccccccccccccccCCCCCcEEEccCCcc
Q 005709 428 LLSHLDASNCKRLQSLPEISS---CLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCWE 484 (681)
Q Consensus 428 ~L~~L~l~~c~~l~~lp~~~~---~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~~ 484 (681)
+|+.|++++|......|..+. +|+.|++++|.+.++++..+..+++|+.|++++|+.
T Consensus 178 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred ccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 999999999754444466655 899999999999999987789999999999998874
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.78 E-value=8.5e-19 Score=196.27 Aligned_cols=210 Identities=16% Similarity=0.134 Sum_probs=136.8
Q ss_pred cEEEEEeecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCCCC
Q 005709 257 AIEGIFFDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSFEP 336 (681)
Q Consensus 257 ~v~~l~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l 336 (681)
.++.+ +++.+....+.+.+|.++++|++|++++|.+ ....|..+..+ ++|++|++++|.++.+|.. .+
T Consensus 22 ~L~~L--~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l--------~~~~~~~~~~l-~~L~~L~Ls~N~l~~lp~~-~l 89 (520)
T 2z7x_B 22 KTTIL--NISQNYISELWTSDILSLSKLRILIISHNRI--------QYLDISVFKFN-QELEYLDLSHNKLVKISCH-PT 89 (520)
T ss_dssp TCSEE--ECCSSCCCCCCHHHHTTCTTCCEEECCSSCC--------CEEEGGGGTTC-TTCCEEECCSSCCCEEECC-CC
T ss_pred cccEE--ECCCCcccccChhhccccccccEEecCCCcc--------CCcChHHhhcc-cCCCEEecCCCceeecCcc-cc
Confidence 44443 4444445556677888888888888888775 44446666666 6788888888888877777 77
Q ss_pred CCceEEEcCCCCccc--ccccccccccccccceecc--cCCcc--------------------------cCC-CCCCC--
Q 005709 337 NYLIELNLPYSKVEQ--IWIGEKKAFKLKFINLYNS--RYLTR--------------------------LPE-FSEIP-- 383 (681)
Q Consensus 337 ~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~~L~l--~~l~~--------------------------lp~-~~~l~-- 383 (681)
++|++|+|++|.++. +|..++. +++|++|++ +.+.. .|. ++.+.
T Consensus 90 ~~L~~L~L~~N~l~~~~~p~~~~~---l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~ 166 (520)
T 2z7x_B 90 VNLKHLDLSFNAFDALPICKEFGN---MSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTE 166 (520)
T ss_dssp CCCSEEECCSSCCSSCCCCGGGGG---CTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEE
T ss_pred CCccEEeccCCccccccchhhhcc---CCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccc
Confidence 788888888888775 4566666 666666666 33221 121 22211
Q ss_pred --------------------------------------------------------------------------------
Q 005709 384 -------------------------------------------------------------------------------- 383 (681)
Q Consensus 384 -------------------------------------------------------------------------------- 383 (681)
T Consensus 167 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~ 246 (520)
T 2z7x_B 167 SLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWH 246 (520)
T ss_dssp EEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHT
T ss_pred eEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhh
Confidence
Q ss_pred -CCcEEEcccCCCc-ccCccc-----cCCCccceeccccccccCcCC-----------------------------CCCC
Q 005709 384 -NLERINLSGSELE-RLPATI-----KQFSQLRYLYLRNCNMLQSLP-----------------------------ELPL 427 (681)
Q Consensus 384 -~L~~L~L~~n~l~-~lp~~i-----~~L~~L~~L~L~~c~~l~~lp-----------------------------~~l~ 427 (681)
+|++|++++|.++ .+|..+ +++++|+.+++++|.. .+| ..++
T Consensus 247 ~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~ 324 (520)
T 2z7x_B 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKIS 324 (520)
T ss_dssp SSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCC
T ss_pred CcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCC
Confidence 4555555555555 566655 5555555555554332 333 3467
Q ss_pred CCCEEeccCCCCCcccCCCCC---CccEEeccccccccccc--ccccCCCCCcEEEccCCc
Q 005709 428 LLSHLDASNCKRLQSLPEISS---CLEELDISILEKLSKTT--FPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 428 ~L~~L~l~~c~~l~~lp~~~~---~L~~L~l~~n~l~~~~~--~~l~~l~~L~~L~l~~c~ 483 (681)
+|++|++++|...+.+|..++ +|++|++++|.+.+++. ..++.+++|++|++++|.
T Consensus 325 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~ 385 (520)
T 2z7x_B 325 PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385 (520)
T ss_dssp CCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC
T ss_pred cccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc
Confidence 888888888765555676655 88889999888886432 227888888888888876
No 27
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.78 E-value=4.1e-18 Score=179.21 Aligned_cols=204 Identities=16% Similarity=0.144 Sum_probs=146.0
Q ss_pred eecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCCCCCCceEE
Q 005709 263 FDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSFEPNYLIEL 342 (681)
Q Consensus 263 l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L 342 (681)
++++.+....+.+..|.++++|++|++++|.+ ....|..+..+ ++|++|++++|.++.+|..+. ++|++|
T Consensus 57 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l--------~~~~~~~~~~l-~~L~~L~Ls~n~l~~l~~~~~-~~L~~L 126 (330)
T 1xku_A 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKI--------SKISPGAFAPL-VKLERLYLSKNQLKELPEKMP-KTLQEL 126 (330)
T ss_dssp EECCSSCCCCBCTTTTTTCTTCCEEECCSSCC--------CCBCTTTTTTC-TTCCEEECCSSCCSBCCSSCC-TTCCEE
T ss_pred EECCCCcCCEeChhhhccCCCCCEEECCCCcC--------CeeCHHHhcCC-CCCCEEECCCCcCCccChhhc-ccccEE
Confidence 45555555556666788888888888887775 33346666666 678888888888888877654 678888
Q ss_pred EcCCCCccccccc-ccccccccccceecc--cCCc---ccCC-CCCCCCCcEEEcccCCCcccCccccCCCccceecccc
Q 005709 343 NLPYSKVEQIWIG-EKKAFKLKFINLYNS--RYLT---RLPE-FSEIPNLERINLSGSELERLPATIKQFSQLRYLYLRN 415 (681)
Q Consensus 343 ~L~~n~l~~lp~~-~~~l~~L~~L~~L~l--~~l~---~lp~-~~~l~~L~~L~L~~n~l~~lp~~i~~L~~L~~L~L~~ 415 (681)
++++|.++.++.. +.. +++|+.|++ +.+. ..|. ++++++|++|++++|.++.+|..+. ++|+.|++++
T Consensus 127 ~l~~n~l~~~~~~~~~~---l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~ 201 (330)
T 1xku_A 127 RVHENEITKVRKSVFNG---LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDG 201 (330)
T ss_dssp ECCSSCCCBBCHHHHTT---CTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTT
T ss_pred ECCCCcccccCHhHhcC---CccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCC
Confidence 8888888776543 555 788888888 4443 2333 7778888888888888888877654 7888888888
Q ss_pred ccccCcCCC-C---CCCCCEEeccCCCCCcccCC-CCC---CccEEecccccccccccccccCCCCCcEEEccCCcc
Q 005709 416 CNMLQSLPE-L---PLLLSHLDASNCKRLQSLPE-ISS---CLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCWE 484 (681)
Q Consensus 416 c~~l~~lp~-~---l~~L~~L~l~~c~~l~~lp~-~~~---~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~~ 484 (681)
|. +..++. . +++|+.|++++|. +..++. .+. +|+.|++++|.+..+|.. +..+++|++|++++|.-
T Consensus 202 n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~-l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 202 NK-ITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNKLVKVPGG-LADHKYIQVVYLHNNNI 275 (330)
T ss_dssp SC-CCEECTGGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSSCCSSCCTT-TTTCSSCCEEECCSSCC
T ss_pred Cc-CCccCHHHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCCcCccCChh-hccCCCcCEEECCCCcC
Confidence 54 555432 2 6778888888854 444443 333 788888888888888777 78888888888887763
No 28
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.77 E-value=3.5e-18 Score=179.88 Aligned_cols=208 Identities=17% Similarity=0.163 Sum_probs=158.5
Q ss_pred cEEEEEeecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCCCC
Q 005709 257 AIEGIFFDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSFEP 336 (681)
Q Consensus 257 ~v~~l~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l 336 (681)
.++. ++++.+....+.+.+|.++++|++|++++|.+ ....|..+..+ ++|++|++++|.++.+|..+.
T Consensus 55 ~l~~--L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l--------~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~- 122 (332)
T 2ft3_A 55 DTTL--LDLQNNDISELRKDDFKGLQHLYALVLVNNKI--------SKIHEKAFSPL-RKLQKLYISKNHLVEIPPNLP- 122 (332)
T ss_dssp TCCE--EECCSSCCCEECTTTTTTCTTCCEEECCSSCC--------CEECGGGSTTC-TTCCEEECCSSCCCSCCSSCC-
T ss_pred CCeE--EECCCCcCCccCHhHhhCCCCCcEEECCCCcc--------CccCHhHhhCc-CCCCEEECCCCcCCccCcccc-
Confidence 3444 45555555566777889999999999998875 44446667777 789999999999998888765
Q ss_pred CCceEEEcCCCCccccccc-ccccccccccceecc--cCCc---ccCC-CCCCCCCcEEEcccCCCcccCccccCCCccc
Q 005709 337 NYLIELNLPYSKVEQIWIG-EKKAFKLKFINLYNS--RYLT---RLPE-FSEIPNLERINLSGSELERLPATIKQFSQLR 409 (681)
Q Consensus 337 ~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~~L~l--~~l~---~lp~-~~~l~~L~~L~L~~n~l~~lp~~i~~L~~L~ 409 (681)
++|++|++++|.++.+|.. +.. +++|+.|++ +.++ ..|. ++.+ +|++|++++|.++.+|..+. ++|+
T Consensus 123 ~~L~~L~l~~n~i~~~~~~~~~~---l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~ 196 (332)
T 2ft3_A 123 SSLVELRIHDNRIRKVPKGVFSG---LRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLN 196 (332)
T ss_dssp TTCCEEECCSSCCCCCCSGGGSS---CSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCS
T ss_pred ccCCEEECCCCccCccCHhHhCC---CccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCC
Confidence 7899999999999888764 566 889999998 5554 3344 7777 89999999888888887765 6889
Q ss_pred eeccccccccCcCCC-C---CCCCCEEeccCCCCCcccCC-CCC---CccEEecccccccccccccccCCCCCcEEEccC
Q 005709 410 YLYLRNCNMLQSLPE-L---PLLLSHLDASNCKRLQSLPE-ISS---CLEELDISILEKLSKTTFPIKHGCSLMQFEFQN 481 (681)
Q Consensus 410 ~L~L~~c~~l~~lp~-~---l~~L~~L~l~~c~~l~~lp~-~~~---~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 481 (681)
.|++++| .+..++. . +++|+.|++++| .+..++. .+. +|+.|++++|.+..+|.. +..+++|+.|++++
T Consensus 197 ~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~-l~~l~~L~~L~l~~ 273 (332)
T 2ft3_A 197 ELHLDHN-KIQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNNKLSRVPAG-LPDLKLLQVVYLHT 273 (332)
T ss_dssp CCBCCSS-CCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSSCCCBCCTT-GGGCTTCCEEECCS
T ss_pred EEECCCC-cCCccCHHHhcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCCcCeecChh-hhcCccCCEEECCC
Confidence 9999884 4555553 2 778899999886 4555543 333 889999999999988887 88889999998888
Q ss_pred Cccc
Q 005709 482 CWEL 485 (681)
Q Consensus 482 c~~L 485 (681)
|.--
T Consensus 274 N~l~ 277 (332)
T 2ft3_A 274 NNIT 277 (332)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7633
No 29
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=4.3e-18 Score=187.20 Aligned_cols=189 Identities=19% Similarity=0.218 Sum_probs=163.1
Q ss_pred CCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCC-C-CCCCceEEEcCCCCccccccc-ccc
Q 005709 282 SSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFS-F-EPNYLIELNLPYSKVEQIWIG-EKK 358 (681)
Q Consensus 282 ~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~l~~lp~~-~~~ 358 (681)
++|+.|++++|.+ ....+..+..+ ++|++|++++|.++.+++. | ++++|++|+|++|.++.+|.. +..
T Consensus 75 ~~l~~L~L~~n~i--------~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 145 (452)
T 3zyi_A 75 SNTRYLNLMENNI--------QMIQADTFRHL-HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEY 145 (452)
T ss_dssp TTCSEEECCSSCC--------CEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSS
T ss_pred CCccEEECcCCcC--------ceECHHHcCCC-CCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcc
Confidence 6899999999986 44456677777 7899999999999988754 6 899999999999999988765 666
Q ss_pred cccccccceecc--cCCcccCC--CCCCCCCcEEEcc-cCCCcccCcc-ccCCCccceeccccccccCcCCCC--CCCCC
Q 005709 359 AFKLKFINLYNS--RYLTRLPE--FSEIPNLERINLS-GSELERLPAT-IKQFSQLRYLYLRNCNMLQSLPEL--PLLLS 430 (681)
Q Consensus 359 l~~L~~L~~L~l--~~l~~lp~--~~~l~~L~~L~L~-~n~l~~lp~~-i~~L~~L~~L~L~~c~~l~~lp~~--l~~L~ 430 (681)
+++|++|++ +.+..+|. |.++++|++|+++ ++.+..+|.. +.++++|++|++++| .+..+|.. +++|+
T Consensus 146 ---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~ 221 (452)
T 3zyi_A 146 ---LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPNLTPLVGLE 221 (452)
T ss_dssp ---CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCCCTTCTTCC
T ss_pred ---cCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-ccccccccccccccc
Confidence 999999999 88888885 9999999999999 5888888875 899999999999994 67788876 88999
Q ss_pred EEeccCCCCCcccCCCCC---CccEEecccccccccccccccCCCCCcEEEccCCc
Q 005709 431 HLDASNCKRLQSLPEISS---CLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 431 ~L~l~~c~~l~~lp~~~~---~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~ 483 (681)
.|++++|...+..|..+. +|+.|++++|.+..+++..+..+++|+.|+|++|.
T Consensus 222 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 222 ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp EEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc
Confidence 999999754444455544 99999999999999988879999999999999986
No 30
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=1.4e-18 Score=181.86 Aligned_cols=224 Identities=14% Similarity=0.109 Sum_probs=178.4
Q ss_pred cEEEEEeecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCCCC
Q 005709 257 AIEGIFFDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSFEP 336 (681)
Q Consensus 257 ~v~~l~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l 336 (681)
+++. ++++.+....+.+..|.++++|+.|++++|.+ ....+ +..+ ++|++|++++|.++.+|. .
T Consensus 35 ~L~~--L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--------~~~~~--~~~l-~~L~~L~Ls~n~l~~l~~---~ 98 (317)
T 3o53_A 35 NVKE--LDLSGNPLSQISAADLAPFTKLELLNLSSNVL--------YETLD--LESL-STLRTLDLNNNYVQELLV---G 98 (317)
T ss_dssp GCSE--EECTTSCCCCCCHHHHTTCTTCCEEECTTSCC--------EEEEE--ETTC-TTCCEEECCSSEEEEEEE---C
T ss_pred CCCE--EECcCCccCcCCHHHhhCCCcCCEEECCCCcC--------Ccchh--hhhc-CCCCEEECcCCccccccC---C
Confidence 4554 45555555667888999999999999999885 22222 5666 789999999999888774 4
Q ss_pred CCceEEEcCCCCcccccccccccccccccceecc--cCCcccCC--CCCCCCCcEEEcccCCCcccC-ccc-cCCCccce
Q 005709 337 NYLIELNLPYSKVEQIWIGEKKAFKLKFINLYNS--RYLTRLPE--FSEIPNLERINLSGSELERLP-ATI-KQFSQLRY 410 (681)
Q Consensus 337 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~~L~l--~~l~~lp~--~~~l~~L~~L~L~~n~l~~lp-~~i-~~L~~L~~ 410 (681)
++|++|++++|.++.++.. . +++|+.|++ +.++.++. ++.+++|++|++++|.++.++ ..+ ..+++|++
T Consensus 99 ~~L~~L~l~~n~l~~~~~~--~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~ 173 (317)
T 3o53_A 99 PSIETLHAANNNISRVSCS--R---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173 (317)
T ss_dssp TTCCEEECCSSCCSEEEEC--C---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred CCcCEEECCCCccCCcCcc--c---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCE
Confidence 8999999999999988654 2 788999999 88888763 888999999999999999764 445 57999999
Q ss_pred eccccccccCcCCCC--CCCCCEEeccCCCCCcccCCCCC---CccEEecccccccccccccccCCCCCcEEEccCCccc
Q 005709 411 LYLRNCNMLQSLPEL--PLLLSHLDASNCKRLQSLPEISS---CLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCWEL 485 (681)
Q Consensus 411 L~L~~c~~l~~lp~~--l~~L~~L~l~~c~~l~~lp~~~~---~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~~L 485 (681)
|++++| .+..+|.. +++|++|++++| .+..+|..+. +|+.|++++|.+..+|.. +..+++|+.|++++|...
T Consensus 174 L~L~~N-~l~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~-~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 174 LNLQYN-FIYDVKGQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp EECTTS-CCCEEECCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTCCCB
T ss_pred EECCCC-cCcccccccccccCCEEECCCC-cCCcchhhhcccCcccEEECcCCcccchhhH-hhcCCCCCEEEccCCCcc
Confidence 999995 57777765 889999999995 6677776654 999999999999999887 899999999999887743
Q ss_pred cccccccChHHHHHhhHHHHHHH
Q 005709 486 KENKILEDSELRIQHMAIASLRL 508 (681)
Q Consensus 486 ~l~~~~l~~~~i~~l~~L~~L~~ 508 (681)
.- .....+..+++|+.|+.
T Consensus 251 ~~----~~~~~~~~~~~L~~l~l 269 (317)
T 3o53_A 251 CG----TLRDFFSKNQRVQTVAK 269 (317)
T ss_dssp HH----HHHHHHHTCHHHHHHHH
T ss_pred Cc----CHHHHHhccccceEEEC
Confidence 11 01156777888888773
No 31
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=5.5e-18 Score=185.66 Aligned_cols=188 Identities=21% Similarity=0.280 Sum_probs=162.0
Q ss_pred CCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCC-C-CCCCceEEEcCCCCcccccc-cccc
Q 005709 282 SSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFS-F-EPNYLIELNLPYSKVEQIWI-GEKK 358 (681)
Q Consensus 282 ~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~l~~lp~-~~~~ 358 (681)
++++.|++++|.+ ....+..+..+ ++|++|++++|.++.++.. | ++++|++|+|++|+++.+|. .+..
T Consensus 64 ~~l~~L~L~~n~i--------~~~~~~~~~~l-~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 134 (440)
T 3zyj_A 64 TNTRLLNLHENQI--------QIIKVNSFKHL-RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVY 134 (440)
T ss_dssp TTCSEEECCSCCC--------CEECTTTTSSC-SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCS
T ss_pred CCCcEEEccCCcC--------CeeCHHHhhCC-CCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhc
Confidence 6899999999986 34444667777 7899999999999998754 6 89999999999999999876 4667
Q ss_pred cccccccceecc--cCCcccCC--CCCCCCCcEEEcc-cCCCcccCc-cccCCCccceeccccccccCcCCCC--CCCCC
Q 005709 359 AFKLKFINLYNS--RYLTRLPE--FSEIPNLERINLS-GSELERLPA-TIKQFSQLRYLYLRNCNMLQSLPEL--PLLLS 430 (681)
Q Consensus 359 l~~L~~L~~L~l--~~l~~lp~--~~~l~~L~~L~L~-~n~l~~lp~-~i~~L~~L~~L~L~~c~~l~~lp~~--l~~L~ 430 (681)
+++|+.|++ +.+..+|. |.++++|++|+++ ++.+..+|. .+.++++|++|++++| .+..+|.. +++|+
T Consensus 135 ---l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~ 210 (440)
T 3zyj_A 135 ---LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKLD 210 (440)
T ss_dssp ---CSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCCCTTCSSCC
T ss_pred ---cccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccccCCCcccC
Confidence 999999999 88888885 9999999999999 588888877 4899999999999994 68888876 78999
Q ss_pred EEeccCCCCCccc-CCCCC---CccEEecccccccccccccccCCCCCcEEEccCCc
Q 005709 431 HLDASNCKRLQSL-PEISS---CLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 431 ~L~l~~c~~l~~l-p~~~~---~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~ 483 (681)
.|++++|. +..+ |..+. +|+.|++++|.+..+++..+.++++|+.|+|++|.
T Consensus 211 ~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 211 ELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN 266 (440)
T ss_dssp EEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC
T ss_pred EEECCCCc-cCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC
Confidence 99999974 5555 55444 99999999999999988889999999999999986
No 32
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.77 E-value=1.3e-18 Score=198.46 Aligned_cols=123 Identities=24% Similarity=0.291 Sum_probs=70.3
Q ss_pred ecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCC-CCCC-CCCCceE
Q 005709 264 DLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTL-PFSF-EPNYLIE 341 (681)
Q Consensus 264 ~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~l-p~~~-~l~~L~~ 341 (681)
+++.+....+.+.+|.++++|++|++++|.+ ....|..+..+ ++|++|++++|.++.+ |..| ++++|++
T Consensus 38 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--------~~i~~~~~~~l-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 108 (606)
T 3vq2_A 38 DLSFNPLKILKSYSFSNFSELQWLDLSRCEI--------ETIEDKAWHGL-HHLSNLILTGNPIQSFSPGSFSGLTSLEN 108 (606)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTCCC--------CEECTTTTTTC-TTCCEEECTTCCCCCCCTTSSTTCTTCCE
T ss_pred ECCCCCcCEeChhhccCCccCcEEeCCCCcc--------cccCHHHhhch-hhcCEeECCCCcccccChhhcCCcccCCE
Confidence 3444444445556666777777777766654 22234444555 5666666666666665 4445 6666666
Q ss_pred EEcCCCCccccc-ccccccccccccceecc--cCCc--ccCC-CCCCCCCcEEEcccCCCccc
Q 005709 342 LNLPYSKVEQIW-IGEKKAFKLKFINLYNS--RYLT--RLPE-FSEIPNLERINLSGSELERL 398 (681)
Q Consensus 342 L~L~~n~l~~lp-~~~~~l~~L~~L~~L~l--~~l~--~lp~-~~~l~~L~~L~L~~n~l~~l 398 (681)
|++++|.++.++ ..++. +++|++|++ +.+. .+|. ++++++|++|++++|.++.+
T Consensus 109 L~L~~n~l~~~~~~~~~~---l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 109 LVAVETKLASLESFPIGQ---LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp EECTTSCCCCSSSSCCTT---CTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred EEccCCccccccccccCC---CCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 666666666554 34444 666666666 4444 2454 66666666666665555543
No 33
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.76 E-value=3e-18 Score=195.52 Aligned_cols=144 Identities=15% Similarity=0.188 Sum_probs=115.9
Q ss_pred EeecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCC-CCCC-CCCCc
Q 005709 262 FFDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTL-PFSF-EPNYL 339 (681)
Q Consensus 262 ~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~l-p~~~-~l~~L 339 (681)
.++++.+....+.+.+|.++++|++|++++|.+ ....|..+..+ ++|++|++++|.++.+ |..| .+++|
T Consensus 37 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i--------~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L 107 (606)
T 3t6q_A 37 CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI--------YWIHEDTFQSQ-HRLDTLVLTANPLIFMAETALSGPKAL 107 (606)
T ss_dssp EEECTTCCCSEECTTTSTTCTTCSEEECTTCCC--------CEECTTTTTTC-TTCCEEECTTCCCSEECTTTTSSCTTC
T ss_pred EEEccCCccCcCChhHhccCccceEEECCCCcc--------ceeChhhccCc-cccCeeeCCCCcccccChhhhcccccc
Confidence 455666666667788999999999999998876 45556777777 7899999999999886 4456 89999
Q ss_pred eEEEcCCCCcccc-cccccccccccccceecc--cCCccc--CCCCCCCCCcEEEcccCCCcccC-ccccCCCccc--ee
Q 005709 340 IELNLPYSKVEQI-WIGEKKAFKLKFINLYNS--RYLTRL--PEFSEIPNLERINLSGSELERLP-ATIKQFSQLR--YL 411 (681)
Q Consensus 340 ~~L~L~~n~l~~l-p~~~~~l~~L~~L~~L~l--~~l~~l--p~~~~l~~L~~L~L~~n~l~~lp-~~i~~L~~L~--~L 411 (681)
++|++++|.++.+ |..+.. +++|++|++ +.+..+ |.+..+++|++|++++|.++.++ ..++.+++|+ .|
T Consensus 108 ~~L~L~~n~i~~l~~~~~~~---l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L 184 (606)
T 3t6q_A 108 KHLFFIQTGISSIDFIPLHN---QKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSL 184 (606)
T ss_dssp CEEECTTSCCSCGGGSCCTT---CTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEE
T ss_pred cEeeccccCcccCCcchhcc---CCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEE
Confidence 9999999999987 566776 999999999 777766 55667999999999999998774 4588888888 77
Q ss_pred cccccc
Q 005709 412 YLRNCN 417 (681)
Q Consensus 412 ~L~~c~ 417 (681)
++++|.
T Consensus 185 ~l~~n~ 190 (606)
T 3t6q_A 185 NLNGND 190 (606)
T ss_dssp ECTTCC
T ss_pred ecCCCc
Confidence 777754
No 34
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=2.2e-17 Score=187.30 Aligned_cols=59 Identities=24% Similarity=0.185 Sum_probs=30.9
Q ss_pred CCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCCCCCCceEEEcCCCCccccc
Q 005709 280 NMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSFEPNYLIELNLPYSKVEQIW 353 (681)
Q Consensus 280 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~lp 353 (681)
.+++|++|++++|.+. .+|. .+++|++|++++|.++.+|. .+.+|+.|++++|+++.+|
T Consensus 79 ~l~~L~~L~Ls~N~l~---------~lp~----~l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~~N~l~~lp 137 (622)
T 3g06_A 79 LPPELRTLEVSGNQLT---------SLPV----LPPGLLELSIFSNPLTHLPA--LPSGLCKLWIFGNQLTSLP 137 (622)
T ss_dssp CCTTCCEEEECSCCCS---------CCCC----CCTTCCEEEECSCCCCCCCC--CCTTCCEEECCSSCCSCCC
T ss_pred cCCCCCEEEcCCCcCC---------cCCC----CCCCCCEEECcCCcCCCCCC--CCCCcCEEECCCCCCCcCC
Confidence 4567777777766642 2332 12456666666666555554 3344444444444444444
No 35
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.76 E-value=7.4e-18 Score=173.92 Aligned_cols=188 Identities=22% Similarity=0.238 Sum_probs=162.5
Q ss_pred hcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCC-CC-CCCCceEEEcCCCCccccccc
Q 005709 278 FANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPF-SF-EPNYLIELNLPYSKVEQIWIG 355 (681)
Q Consensus 278 f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~n~l~~lp~~ 355 (681)
+.++++|+.++++++.+ ..+|.++ +++++.|++++|.++.+++ .| .+++|++|+|++|.++.++..
T Consensus 6 ~~~l~~l~~l~~~~~~l---------~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNL---------TALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD 73 (290)
T ss_dssp EECSTTCCEEECTTSCC---------SSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC
T ss_pred ccccCCccEEECCCCCC---------CcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC
Confidence 57889999999998774 4555544 4789999999999998765 46 899999999999999988765
Q ss_pred ccccccccccceecc--cCCcccCC-CCCCCCCcEEEcccCCCcccCc-cccCCCccceeccccccccCcCCCC----CC
Q 005709 356 EKKAFKLKFINLYNS--RYLTRLPE-FSEIPNLERINLSGSELERLPA-TIKQFSQLRYLYLRNCNMLQSLPEL----PL 427 (681)
Q Consensus 356 ~~~l~~L~~L~~L~l--~~l~~lp~-~~~l~~L~~L~L~~n~l~~lp~-~i~~L~~L~~L~L~~c~~l~~lp~~----l~ 427 (681)
.. +++|++|++ +.++.+|. +..+++|++|++++|.++.+|+ .+..+++|++|++++ +.+..+|.. ++
T Consensus 74 -~~---l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~ 148 (290)
T 1p9a_G 74 -GT---LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTP 148 (290)
T ss_dssp -SC---CTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCT
T ss_pred -CC---CCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCC-CCCCccChhhccccc
Confidence 55 999999999 88999997 8999999999999999999885 599999999999999 467777764 78
Q ss_pred CCCEEeccCCCCCcccCCCC----CCccEEecccccccccccccccCCCCCcEEEccCCcc
Q 005709 428 LLSHLDASNCKRLQSLPEIS----SCLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCWE 484 (681)
Q Consensus 428 ~L~~L~l~~c~~l~~lp~~~----~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~~ 484 (681)
+|+.|++++| .+..+|... .+|+.|++++|.++.+|.. +..+.+|+.|++++|+.
T Consensus 149 ~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~-~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 149 KLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENSLYTIPKG-FFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCCCSEEECCSCCB
T ss_pred CCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCCcCCccChh-hcccccCCeEEeCCCCc
Confidence 9999999995 677888754 3999999999999999998 88888999999998874
No 36
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.76 E-value=1.9e-18 Score=195.34 Aligned_cols=124 Identities=14% Similarity=0.143 Sum_probs=93.2
Q ss_pred CcEEEEEeecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCCC
Q 005709 256 DAIEGIFFDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSFE 335 (681)
Q Consensus 256 ~~v~~l~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~ 335 (681)
..++.+ +++.+....+.+.+|.++++|++|++++|.+ ....|..+..+ ++|++|++++|.++.+|.. .
T Consensus 52 ~~L~~L--~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l--------~~~~~~~~~~l-~~L~~L~Ls~N~l~~lp~~-~ 119 (562)
T 3a79_B 52 PRTKAL--SLSQNSISELRMPDISFLSELRVLRLSHNRI--------RSLDFHVFLFN-QDLEYLDVSHNRLQNISCC-P 119 (562)
T ss_dssp TTCCEE--ECCSSCCCCCCGGGTTTCTTCCEEECCSCCC--------CEECTTTTTTC-TTCCEEECTTSCCCEECSC-C
T ss_pred CCcCEE--ECCCCCccccChhhhccCCCccEEECCCCCC--------CcCCHHHhCCC-CCCCEEECCCCcCCccCcc-c
Confidence 345544 5555555667788999999999999999886 44446667777 7899999999999999988 8
Q ss_pred CCCceEEEcCCCCccccc--ccccccccccccceecc--cCCcccCCCCCCCCC--cEEEcccCCC
Q 005709 336 PNYLIELNLPYSKVEQIW--IGEKKAFKLKFINLYNS--RYLTRLPEFSEIPNL--ERINLSGSEL 395 (681)
Q Consensus 336 l~~L~~L~L~~n~l~~lp--~~~~~l~~L~~L~~L~l--~~l~~lp~~~~l~~L--~~L~L~~n~l 395 (681)
+++|++|+|++|.++.+| ..+.+ +++|++|++ +.+.. .+++.+++| ++|+++.|.+
T Consensus 120 l~~L~~L~Ls~N~l~~l~~p~~~~~---l~~L~~L~L~~n~l~~-~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 120 MASLRHLDLSFNDFDVLPVCKEFGN---LTKLTFLGLSAAKFRQ-LDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CTTCSEEECCSSCCSBCCCCGGGGG---CTTCCEEEEECSBCCT-TTTGGGTTSCEEEEEEEESSC
T ss_pred cccCCEEECCCCCccccCchHhhcc---cCcccEEecCCCcccc-CchhhhhhceeeEEEeecccc
Confidence 999999999999998764 67777 888999888 54443 224444444 7777766555
No 37
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=1.7e-18 Score=191.94 Aligned_cols=223 Identities=14% Similarity=0.092 Sum_probs=176.0
Q ss_pred cEEEEEeecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCCCC
Q 005709 257 AIEGIFFDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSFEP 336 (681)
Q Consensus 257 ~v~~l~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l 336 (681)
.++.+. ++.+....+.+..|.++++|++|++++|.+ ....| +..+ ++|++|++++|.++.+|..
T Consensus 35 ~L~~L~--Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l--------~~~~~--l~~l-~~L~~L~Ls~N~l~~l~~~--- 98 (487)
T 3oja_A 35 NVKELD--LSGNPLSQISAADLAPFTKLELLNLSSNVL--------YETLD--LESL-STLRTLDLNNNYVQELLVG--- 98 (487)
T ss_dssp GCCEEE--CCSSCCCCCCGGGGTTCTTCCEEECTTSCC--------EEEEE--CTTC-TTCCEEECCSSEEEEEEEC---
T ss_pred CccEEE--eeCCcCCCCCHHHHhCCCCCCEEEeeCCCC--------CCCcc--cccC-CCCCEEEecCCcCCCCCCC---
Confidence 555554 444555557788999999999999999886 33333 6666 7899999999999887753
Q ss_pred CCceEEEcCCCCcccccccccccccccccceecc--cCCcccC--CCCCCCCCcEEEcccCCCcc-cCcccc-CCCccce
Q 005709 337 NYLIELNLPYSKVEQIWIGEKKAFKLKFINLYNS--RYLTRLP--EFSEIPNLERINLSGSELER-LPATIK-QFSQLRY 410 (681)
Q Consensus 337 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~~L~l--~~l~~lp--~~~~l~~L~~L~L~~n~l~~-lp~~i~-~L~~L~~ 410 (681)
++|++|++++|.++.++.. . +++|+.|++ +.++.++ .++.+++|++|+|++|.++. .|..+. ++++|+.
T Consensus 99 ~~L~~L~L~~N~l~~~~~~--~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~ 173 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCS--R---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173 (487)
T ss_dssp TTCCEEECCSSCCCCEEEC--C---CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred CCcCEEECcCCcCCCCCcc--c---cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccE
Confidence 7899999999999988654 3 789999999 7777775 38899999999999999996 455665 8999999
Q ss_pred eccccccccCcCCCC--CCCCCEEeccCCCCCcccCCCCC---CccEEecccccccccccccccCCCCCcEEEccCCccc
Q 005709 411 LYLRNCNMLQSLPEL--PLLLSHLDASNCKRLQSLPEISS---CLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCWEL 485 (681)
Q Consensus 411 L~L~~c~~l~~lp~~--l~~L~~L~l~~c~~l~~lp~~~~---~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~~L 485 (681)
|+|++| .+..+|.. +++|+.|++++| .+..+|..+. +|+.|++++|.+.++|.. +..+++|+.|++++|...
T Consensus 174 L~Ls~N-~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 174 LNLQYN-FIYDVKGQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EECTTS-CCCEEECCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTCCBC
T ss_pred EecCCC-ccccccccccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCCcCcccchh-hccCCCCCEEEcCCCCCc
Confidence 999995 46666665 889999999996 5667776654 899999999999999988 999999999999887644
Q ss_pred cccccccChHHHHHhhHHHHHH
Q 005709 486 KENKILEDSELRIQHMAIASLR 507 (681)
Q Consensus 486 ~l~~~~l~~~~i~~l~~L~~L~ 507 (681)
... ....+..++.|+.|.
T Consensus 251 c~~----~~~~~~~l~~L~~l~ 268 (487)
T 3oja_A 251 CGT----LRDFFSKNQRVQTVA 268 (487)
T ss_dssp HHH----HHHHHTTCHHHHHHH
T ss_pred Ccc----hHHHHHhCCCCcEEe
Confidence 110 014456667777665
No 38
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.76 E-value=1.2e-17 Score=175.66 Aligned_cols=188 Identities=15% Similarity=0.192 Sum_probs=153.5
Q ss_pred CCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCC-CCCC-CCCCceEEEcCCCCccccccccccc
Q 005709 282 SSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTL-PFSF-EPNYLIELNLPYSKVEQIWIGEKKA 359 (681)
Q Consensus 282 ~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~l-p~~~-~l~~L~~L~L~~n~l~~lp~~~~~l 359 (681)
++|+.|++++|.+ ....+..+..+ ++|++|++++|.++.+ |..+ .+++|++|++++|.++.+|..+
T Consensus 52 ~~l~~L~L~~n~i--------~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~--- 119 (330)
T 1xku_A 52 PDTALLDLQNNKI--------TEIKDGDFKNL-KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM--- 119 (330)
T ss_dssp TTCCEEECCSSCC--------CCBCTTTTTTC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC---
T ss_pred CCCeEEECCCCcC--------CEeChhhhccC-CCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhh---
Confidence 6899999998885 23233356666 7899999999999987 6667 8999999999999999888765
Q ss_pred ccccccceecc--cCCcccCC--CCCCCCCcEEEcccCCCc---ccCccccCCCccceeccccccccCcCCCC-CCCCCE
Q 005709 360 FKLKFINLYNS--RYLTRLPE--FSEIPNLERINLSGSELE---RLPATIKQFSQLRYLYLRNCNMLQSLPEL-PLLLSH 431 (681)
Q Consensus 360 ~~L~~L~~L~l--~~l~~lp~--~~~l~~L~~L~L~~n~l~---~lp~~i~~L~~L~~L~L~~c~~l~~lp~~-l~~L~~ 431 (681)
.++|+.|++ +.+..++. ++++++|++|++++|.+. ..+..+.++++|++|++++ +.+..+|.. .++|++
T Consensus 120 --~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~-n~l~~l~~~~~~~L~~ 196 (330)
T 1xku_A 120 --PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD-TNITTIPQGLPPSLTE 196 (330)
T ss_dssp --CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS-SCCCSCCSSCCTTCSE
T ss_pred --cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC-CccccCCccccccCCE
Confidence 478999999 77888874 899999999999988886 3466789999999999998 457778866 678999
Q ss_pred EeccCCCCCccc-CCCCC---CccEEecccccccccccccccCCCCCcEEEccCCccc
Q 005709 432 LDASNCKRLQSL-PEISS---CLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCWEL 485 (681)
Q Consensus 432 L~l~~c~~l~~l-p~~~~---~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~~L 485 (681)
|++++|. +..+ |..+. +|+.|++++|.+.++++..+..+++|+.|++++|.--
T Consensus 197 L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 197 LHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253 (330)
T ss_dssp EECTTSC-CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred EECCCCc-CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc
Confidence 9999975 4444 44444 8999999999999988866899999999999998643
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.76 E-value=1.4e-17 Score=176.21 Aligned_cols=161 Identities=14% Similarity=0.144 Sum_probs=72.2
Q ss_pred cCccEEEecCCCCCCCCCCCCCCCceEEEcCCCCcccccccccccccccccceecc--cCCcccCCCCCCCCCcEEEccc
Q 005709 315 KKLRYLHWHEYPLKTLPFSFEPNYLIELNLPYSKVEQIWIGEKKAFKLKFINLYNS--RYLTRLPEFSEIPNLERINLSG 392 (681)
Q Consensus 315 ~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~~L~l--~~l~~lp~~~~l~~L~~L~L~~ 392 (681)
++|++|++++|.++.+|....+++|++|++++|.....+..+.. +++|++|++ +.+..++.++.+++|++|++++
T Consensus 110 ~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~---l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~ 186 (347)
T 4fmz_A 110 TNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSN---MTGLNYLTVTESKVKDVTPIANLTDLYSLSLNY 186 (347)
T ss_dssp TTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTT---CTTCCEEECCSSCCCCCGGGGGCTTCSEEECTT
T ss_pred CcCCEEECcCCcccCchhhccCCceeEEECCCCCCcccccchhh---CCCCcEEEecCCCcCCchhhccCCCCCEEEccC
Confidence 34444444444444444311444444444444422222222333 444444444 3333333344444455555554
Q ss_pred CCCcccCccccCCCccceeccccccccCcCCCC--CCCCCEEeccCCCCCcccCCC--CCCccEEecccccccccccccc
Q 005709 393 SELERLPATIKQFSQLRYLYLRNCNMLQSLPEL--PLLLSHLDASNCKRLQSLPEI--SSCLEELDISILEKLSKTTFPI 468 (681)
Q Consensus 393 n~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~--l~~L~~L~l~~c~~l~~lp~~--~~~L~~L~l~~n~l~~~~~~~l 468 (681)
|.+..++. +..+++|+.|++++| .+..++.. +++|++|++++| .+..+|.. +.+|+.|++++|.+..++ . +
T Consensus 187 n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~-~ 261 (347)
T 4fmz_A 187 NQIEDISP-LASLTSLHYFTAYVN-QITDITPVANMTRLNSLKIGNN-KITDLSPLANLSQLTWLEIGTNQISDIN-A-V 261 (347)
T ss_dssp SCCCCCGG-GGGCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCCCG-G-G
T ss_pred Cccccccc-ccCCCccceeecccC-CCCCCchhhcCCcCCEEEccCC-ccCCCcchhcCCCCCEEECCCCccCCCh-h-H
Confidence 44444443 444444444444442 22222211 455555555554 33333331 115555666555555542 2 5
Q ss_pred cCCCCCcEEEccCCc
Q 005709 469 KHGCSLMQFEFQNCW 483 (681)
Q Consensus 469 ~~l~~L~~L~l~~c~ 483 (681)
..+++|+.|++++|.
T Consensus 262 ~~l~~L~~L~l~~n~ 276 (347)
T 4fmz_A 262 KDLTKLKMLNVGSNQ 276 (347)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred hcCCCcCEEEccCCc
Confidence 555566666655553
No 40
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.75 E-value=1.7e-18 Score=197.45 Aligned_cols=95 Identities=17% Similarity=0.081 Sum_probs=48.2
Q ss_pred ecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCC-CC-CCCCceE
Q 005709 264 DLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPF-SF-EPNYLIE 341 (681)
Q Consensus 264 ~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~-~~-~l~~L~~ 341 (681)
+++.+....+.+.+|.++++|++|++++|.+ ....|..+..+ ++|++|++++|.++.+|+ .+ .+++|++
T Consensus 62 ~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l--------~~~~p~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 132 (606)
T 3vq2_A 62 DLSRCEIETIEDKAWHGLHHLSNLILTGNPI--------QSFSPGSFSGL-TSLENLVAVETKLASLESFPIGQLITLKK 132 (606)
T ss_dssp ECTTCCCCEECTTTTTTCTTCCEEECTTCCC--------CCCCTTSSTTC-TTCCEEECTTSCCCCSSSSCCTTCTTCCE
T ss_pred eCCCCcccccCHHHhhchhhcCEeECCCCcc--------cccChhhcCCc-ccCCEEEccCCccccccccccCCCCCCCE
Confidence 3333444445566667777777777776664 22234444444 445555555555555442 23 4555555
Q ss_pred EEcCCCCcc--cccccccccccccccceecc
Q 005709 342 LNLPYSKVE--QIWIGEKKAFKLKFINLYNS 370 (681)
Q Consensus 342 L~L~~n~l~--~lp~~~~~l~~L~~L~~L~l 370 (681)
|++++|.++ .+|..+.+ +++|++|++
T Consensus 133 L~L~~n~l~~~~lp~~~~~---l~~L~~L~L 160 (606)
T 3vq2_A 133 LNVAHNFIHSCKLPAYFSN---LTNLVHVDL 160 (606)
T ss_dssp EECCSSCCCCCCCCGGGGT---CTTCCEEEC
T ss_pred EeCCCCcccceechHhHhh---cCCCCEEEc
Confidence 555555554 23444444 444444444
No 41
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.75 E-value=4.7e-18 Score=176.69 Aligned_cols=189 Identities=23% Similarity=0.222 Sum_probs=158.3
Q ss_pred CCCceEEEeCCCCCCCcccccccccCcc-ccccccCccEEEecCCCCCCC---CCCC-CCCCceEEEcCCCCcccccccc
Q 005709 282 SSLTLLKFYMPECNGVPIMSSKLHLNQD-LEYLPKKLRYLHWHEYPLKTL---PFSF-EPNYLIELNLPYSKVEQIWIGE 356 (681)
Q Consensus 282 ~~L~~L~l~~n~~~~~~~~~~~~~l~~~-l~~l~~~L~~L~l~~~~l~~l---p~~~-~l~~L~~L~L~~n~l~~lp~~~ 356 (681)
++|+.|++++|.+ ..+|.. +..+ ++|++|++++|.++.+ |..+ .+++|++|++++|.++.+|..+
T Consensus 28 ~~l~~L~L~~n~l---------~~i~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~ 97 (306)
T 2z66_A 28 SSATRLELESNKL---------QSLPHGVFDKL-TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF 97 (306)
T ss_dssp TTCCEEECCSSCC---------CCCCTTTTTTC-TTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEE
T ss_pred CCCCEEECCCCcc---------CccCHhHhhcc-ccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhc
Confidence 6899999999885 456655 4556 7999999999999866 4555 8999999999999999999888
Q ss_pred cccccccccceecc--cCCcccCC---CCCCCCCcEEEcccCCCccc-CccccCCCccceeccccccccC-cCCCC---C
Q 005709 357 KKAFKLKFINLYNS--RYLTRLPE---FSEIPNLERINLSGSELERL-PATIKQFSQLRYLYLRNCNMLQ-SLPEL---P 426 (681)
Q Consensus 357 ~~l~~L~~L~~L~l--~~l~~lp~---~~~l~~L~~L~L~~n~l~~l-p~~i~~L~~L~~L~L~~c~~l~-~lp~~---l 426 (681)
.. +++|++|++ +.+..++. +..+++|++|++++|.+..+ |..+..+++|++|++++|...+ .+|.. +
T Consensus 98 ~~---l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 174 (306)
T 2z66_A 98 LG---LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 174 (306)
T ss_dssp ET---CTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred CC---CCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhC
Confidence 88 999999999 77777763 88999999999999999865 4558999999999999976444 35654 7
Q ss_pred CCCCEEeccCCCCCcccCCCCC---CccEEecccccccccccccccCCCCCcEEEccCCc
Q 005709 427 LLLSHLDASNCKRLQSLPEISS---CLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 427 ~~L~~L~l~~c~~l~~lp~~~~---~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~ 483 (681)
++|++|++++|...+..|..+. +|+.|++++|.+.++++..+..+++|+.|++++|.
T Consensus 175 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 175 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence 8999999999754333355554 89999999999999988769999999999999986
No 42
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.75 E-value=1.8e-17 Score=178.52 Aligned_cols=203 Identities=18% Similarity=0.124 Sum_probs=121.6
Q ss_pred cCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCC-C-CCCCceEE
Q 005709 265 LSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFS-F-EPNYLIEL 342 (681)
Q Consensus 265 ~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L 342 (681)
++.+....+.+.+|.++++|++|++++|.+ ....|..+..+ ++|++|++++|.++.+|.. | .+++|++|
T Consensus 76 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l--------~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 146 (390)
T 3o6n_A 76 LNDLQIEEIDTYAFAYAHTIQKLYMGFNAI--------RYLPPHVFQNV-PLLTVLVLERNDLSSLPRGIFHNTPKLTTL 146 (390)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCC--------CCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcccccChhhccCCCCcCEEECCCCCC--------CcCCHHHhcCC-CCCCEEECCCCccCcCCHHHhcCCCCCcEE
Confidence 333333445555666666666666666654 22223334444 5566666666666666655 3 56666666
Q ss_pred EcCCCCcccccc-cccccccccccceecc--cCCcccCC--CC-------------------------------------
Q 005709 343 NLPYSKVEQIWI-GEKKAFKLKFINLYNS--RYLTRLPE--FS------------------------------------- 380 (681)
Q Consensus 343 ~L~~n~l~~lp~-~~~~l~~L~~L~~L~l--~~l~~lp~--~~------------------------------------- 380 (681)
++++|.++.++. .+.. +++|+.|++ +.++.++. +.
T Consensus 147 ~L~~n~l~~~~~~~~~~---l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~ 223 (390)
T 3o6n_A 147 SMSNNNLERIEDDTFQA---TTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP 223 (390)
T ss_dssp ECCSSCCCBCCTTTTSS---CTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECC
T ss_pred ECCCCccCccChhhccC---CCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecccc
Confidence 666666655532 3444 555555555 33333220 11
Q ss_pred CCCCCcEEEcccCCCcccCccccCCCccceeccccccccCcC-CCC---CCCCCEEeccCCCCCcccCCCCC---CccEE
Q 005709 381 EIPNLERINLSGSELERLPATIKQFSQLRYLYLRNCNMLQSL-PEL---PLLLSHLDASNCKRLQSLPEISS---CLEEL 453 (681)
Q Consensus 381 ~l~~L~~L~L~~n~l~~lp~~i~~L~~L~~L~L~~c~~l~~l-p~~---l~~L~~L~l~~c~~l~~lp~~~~---~L~~L 453 (681)
..++|+.|++++|.++.+ +.++++++|++|++++|. +..+ |.. +++|+.|++++| .+..+|.... +|+.|
T Consensus 224 ~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L 300 (390)
T 3o6n_A 224 VNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVL 300 (390)
T ss_dssp CCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEE
T ss_pred ccccccEEECCCCCCccc-HHHcCCCCccEEECCCCc-CCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEE
Confidence 123455555555555554 357778888888888854 4443 432 677888888874 5566665443 78888
Q ss_pred ecccccccccccccccCCCCCcEEEccCCc
Q 005709 454 DISILEKLSKTTFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 454 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~ 483 (681)
++++|.+..+|+. +..+++|+.|++++|.
T Consensus 301 ~L~~n~l~~~~~~-~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 301 DLSHNHLLHVERN-QPQFDRLENLYLDHNS 329 (390)
T ss_dssp ECCSSCCCCCGGG-HHHHTTCSEEECCSSC
T ss_pred ECCCCcceecCcc-ccccCcCCEEECCCCc
Confidence 8888888887776 7778888888888775
No 43
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.75 E-value=1e-17 Score=171.51 Aligned_cols=189 Identities=15% Similarity=0.088 Sum_probs=155.9
Q ss_pred CCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCC-C-CCCCceEEEcCCCCccccc-ccccc
Q 005709 282 SSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFS-F-EPNYLIELNLPYSKVEQIW-IGEKK 358 (681)
Q Consensus 282 ~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~l~~lp-~~~~~ 358 (681)
++|+.|++++|.+ ....+..+..+ ++|++|++++|.++.+|.. | .+++|++|+|++|.++.++ ..+..
T Consensus 28 ~~l~~L~ls~n~l--------~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (276)
T 2z62_A 28 FSTKNLDLSFNPL--------RHLGSYSFFSF-PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (276)
T ss_dssp TTCCEEECTTCCC--------CEECTTTTTTC-TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred CCccEEECCCCcc--------cccCHhHhccc-cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence 5799999998885 23233356666 7899999999999988774 5 8999999999999999876 45677
Q ss_pred cccccccceecc--cCCcccCC--CCCCCCCcEEEcccCCCcc--cCccccCCCccceeccccccccCcCCCC----CCC
Q 005709 359 AFKLKFINLYNS--RYLTRLPE--FSEIPNLERINLSGSELER--LPATIKQFSQLRYLYLRNCNMLQSLPEL----PLL 428 (681)
Q Consensus 359 l~~L~~L~~L~l--~~l~~lp~--~~~l~~L~~L~L~~n~l~~--lp~~i~~L~~L~~L~L~~c~~l~~lp~~----l~~ 428 (681)
+++|++|++ +.+..++. ++.+++|++|++++|.++. +|..++++++|++|++++| .+..+|.. +++
T Consensus 99 ---l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~ 174 (276)
T 2z62_A 99 ---LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQ 174 (276)
T ss_dssp ---CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHT
T ss_pred ---CccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhhhh
Confidence 999999999 77887775 8999999999999999986 6888999999999999995 56666643 344
Q ss_pred CC----EEeccCCCCCcccCCCCC---CccEEecccccccccccccccCCCCCcEEEccCCcc
Q 005709 429 LS----HLDASNCKRLQSLPEISS---CLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCWE 484 (681)
Q Consensus 429 L~----~L~l~~c~~l~~lp~~~~---~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~~ 484 (681)
|+ .|++++| .+..+|.... +|+.|++++|.++.+|+..+..+++|+.|++++|+.
T Consensus 175 L~~l~l~L~ls~n-~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 175 MPLLNLSLDLSLN-PMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp CTTCCEEEECCSS-CCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred ccccceeeecCCC-cccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 44 8999995 5666665543 899999999999999998789999999999998763
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.75 E-value=2.6e-17 Score=173.25 Aligned_cols=208 Identities=14% Similarity=0.138 Sum_probs=168.2
Q ss_pred CcEEEEEeecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCC-C
Q 005709 256 DAIEGIFFDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFS-F 334 (681)
Q Consensus 256 ~~v~~l~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~ 334 (681)
..++.+ +++.+....+.+.+|.++++|++|++++|.+ ..+|..+. ++|++|++++|.++.+|.. +
T Consensus 78 ~~L~~L--~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l---------~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~ 143 (332)
T 2ft3_A 78 QHLYAL--VLVNNKISKIHEKAFSPLRKLQKLYISKNHL---------VEIPPNLP---SSLVELRIHDNRIRKVPKGVF 143 (332)
T ss_dssp TTCCEE--ECCSSCCCEECGGGSTTCTTCCEEECCSSCC---------CSCCSSCC---TTCCEEECCSSCCCCCCSGGG
T ss_pred CCCcEE--ECCCCccCccCHhHhhCcCCCCEEECCCCcC---------CccCcccc---ccCCEEECCCCccCccCHhHh
Confidence 445554 4455555567788999999999999999885 35555543 6899999999999999986 5
Q ss_pred -CCCCceEEEcCCCCccc---ccccccccccccccceecc--cCCcccCC-CCCCCCCcEEEcccCCCcccC-ccccCCC
Q 005709 335 -EPNYLIELNLPYSKVEQ---IWIGEKKAFKLKFINLYNS--RYLTRLPE-FSEIPNLERINLSGSELERLP-ATIKQFS 406 (681)
Q Consensus 335 -~l~~L~~L~L~~n~l~~---lp~~~~~l~~L~~L~~L~l--~~l~~lp~-~~~l~~L~~L~L~~n~l~~lp-~~i~~L~ 406 (681)
.+++|++|++++|.++. .|..+.. + +|+.|++ +.++.+|. +. ++|++|++++|.++.++ ..+.+++
T Consensus 144 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~---l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~ 217 (332)
T 2ft3_A 144 SGLRNMNCIEMGGNPLENSGFEPGAFDG---L-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYS 217 (332)
T ss_dssp SSCSSCCEEECCSCCCBGGGSCTTSSCS---C-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCT
T ss_pred CCCccCCEEECCCCccccCCCCcccccC---C-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCC
Confidence 89999999999999974 3455555 6 8999999 88888886 43 79999999999999876 5699999
Q ss_pred ccceeccccccccCcCCCC----CCCCCEEeccCCCCCcccCCCCC---CccEEecccccccccccccccC------CCC
Q 005709 407 QLRYLYLRNCNMLQSLPEL----PLLLSHLDASNCKRLQSLPEISS---CLEELDISILEKLSKTTFPIKH------GCS 473 (681)
Q Consensus 407 ~L~~L~L~~c~~l~~lp~~----l~~L~~L~l~~c~~l~~lp~~~~---~L~~L~l~~n~l~~~~~~~l~~------l~~ 473 (681)
+|+.|++++| .+..++.. +++|+.|++++| .+..+|..+. +|+.|++++|.++.++...+.. ..+
T Consensus 218 ~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 295 (332)
T 2ft3_A 218 KLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAY 295 (332)
T ss_dssp TCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCC
T ss_pred CCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCCCCCccChhHcccccccccccc
Confidence 9999999995 56666653 789999999995 6778988765 8999999999999998775654 367
Q ss_pred CcEEEccCCccc
Q 005709 474 LMQFEFQNCWEL 485 (681)
Q Consensus 474 L~~L~l~~c~~L 485 (681)
|+.|++++|+..
T Consensus 296 l~~L~l~~N~~~ 307 (332)
T 2ft3_A 296 YNGISLFNNPVP 307 (332)
T ss_dssp BSEEECCSSSSC
T ss_pred ccceEeecCccc
Confidence 889999988743
No 45
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.75 E-value=4.2e-17 Score=166.40 Aligned_cols=185 Identities=23% Similarity=0.260 Sum_probs=152.4
Q ss_pred CCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCC-C-CCCCceEEEcCCCCcccccccc-cc
Q 005709 282 SSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFS-F-EPNYLIELNLPYSKVEQIWIGE-KK 358 (681)
Q Consensus 282 ~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~l~~lp~~~-~~ 358 (681)
.+++.++++++.+ ..+|.. +|++|+.|++++|.++.+|.. | .+++|++|+|++|.++.+|... ..
T Consensus 16 ~~~~~l~~~~~~l---------~~ip~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~ 83 (270)
T 2o6q_A 16 NNKNSVDCSSKKL---------TAIPSN---IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE 83 (270)
T ss_dssp TTTTEEECTTSCC---------SSCCSC---CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSS
T ss_pred CCCCEEEccCCCC---------CccCCC---CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcC
Confidence 3567788877664 345543 346799999999999988874 6 8899999999999999887764 56
Q ss_pred cccccccceecc--cCCcccCC--CCCCCCCcEEEcccCCCcccCcc-ccCCCccceeccccccccCcCCCC----CCCC
Q 005709 359 AFKLKFINLYNS--RYLTRLPE--FSEIPNLERINLSGSELERLPAT-IKQFSQLRYLYLRNCNMLQSLPEL----PLLL 429 (681)
Q Consensus 359 l~~L~~L~~L~l--~~l~~lp~--~~~l~~L~~L~L~~n~l~~lp~~-i~~L~~L~~L~L~~c~~l~~lp~~----l~~L 429 (681)
+++|++|++ +.+..+|. ++.+++|++|++++|.++.+|+. ++++++|++|++++| .+..+|.. +++|
T Consensus 84 ---l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L 159 (270)
T 2o6q_A 84 ---LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSL 159 (270)
T ss_dssp ---CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred ---CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCccc
Confidence 899999999 77888884 78999999999999999988765 789999999999984 57777764 7899
Q ss_pred CEEeccCCCCCcccCCC-C---CCccEEecccccccccccccccCCCCCcEEEccCCc
Q 005709 430 SHLDASNCKRLQSLPEI-S---SCLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 430 ~~L~l~~c~~l~~lp~~-~---~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~ 483 (681)
+.|++++| .+..+|.. + .+|+.|++++|.++.+++..+..+++|+.|++++|+
T Consensus 160 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 160 KELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ceeEecCC-cCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 99999986 56666653 3 399999999999999998878999999999999886
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=1.7e-17 Score=188.92 Aligned_cols=206 Identities=17% Similarity=0.123 Sum_probs=135.1
Q ss_pred eecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCC-C-CCCCce
Q 005709 263 FDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFS-F-EPNYLI 340 (681)
Q Consensus 263 l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~ 340 (681)
|+++.+....+.+.+|.++++|++|++++|.+ ....|..+..+ ++|++|++++|.++.+|+. | .+++|+
T Consensus 80 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l--------~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 150 (597)
T 3oja_B 80 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI--------RYLPPHVFQNV-PLLTVLVLERNDLSSLPRGIFHNTPKLT 150 (597)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCC--------CCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred EECCCCCCCCCChHHhcCCCCCCEEECCCCcC--------CCCCHHHHcCC-CCCCEEEeeCCCCCCCCHHHhccCCCCC
Confidence 34444444455666777777777777777765 23233344555 5677777777777777665 3 677777
Q ss_pred EEEcCCCCcccccc-cccccccccccceecc--cCCcccCC--CCC----------------------------------
Q 005709 341 ELNLPYSKVEQIWI-GEKKAFKLKFINLYNS--RYLTRLPE--FSE---------------------------------- 381 (681)
Q Consensus 341 ~L~L~~n~l~~lp~-~~~~l~~L~~L~~L~l--~~l~~lp~--~~~---------------------------------- 381 (681)
+|+|++|.++.++. .+.. +++|++|++ +.++.+|. +.+
T Consensus 151 ~L~Ls~N~l~~~~~~~~~~---l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~ 227 (597)
T 3oja_B 151 TLSMSNNNLERIEDDTFQA---TTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR 227 (597)
T ss_dssp EEECCSSCCCBCCTTTTTT---CTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEE
T ss_pred EEEeeCCcCCCCChhhhhc---CCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccc
Confidence 77777777765543 3555 666666666 44444331 111
Q ss_pred ---CCCCcEEEcccCCCcccCccccCCCccceeccccccccCcCCCC---CCCCCEEeccCCCCCcccCCCCC---CccE
Q 005709 382 ---IPNLERINLSGSELERLPATIKQFSQLRYLYLRNCNMLQSLPEL---PLLLSHLDASNCKRLQSLPEISS---CLEE 452 (681)
Q Consensus 382 ---l~~L~~L~L~~n~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~---l~~L~~L~l~~c~~l~~lp~~~~---~L~~ 452 (681)
.++|+.|+|++|.++.. ..++++++|+.|+|++|...+..|.. +++|+.|++++| .+..+|.... +|+.
T Consensus 228 ~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~ 305 (597)
T 3oja_B 228 GPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKV 305 (597)
T ss_dssp CSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCE
T ss_pred cccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcE
Confidence 12355555555555543 45788888999999886544433433 788899999885 5666766543 8899
Q ss_pred EecccccccccccccccCCCCCcEEEccCCc
Q 005709 453 LDISILEKLSKTTFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 453 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~ 483 (681)
|++++|.+..+|.. +..+++|+.|++++|.
T Consensus 306 L~Ls~N~l~~i~~~-~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 306 LDLSHNHLLHVERN-QPQFDRLENLYLDHNS 335 (597)
T ss_dssp EECCSSCCCCCGGG-HHHHTTCSEEECCSSC
T ss_pred EECCCCCCCccCcc-cccCCCCCEEECCCCC
Confidence 99999988888877 7888889999888886
No 47
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.74 E-value=1.9e-17 Score=182.01 Aligned_cols=99 Identities=19% Similarity=0.178 Sum_probs=55.2
Q ss_pred CCCcEEEcccCCCccc-CccccCCCccceeccccccccCcCCC-C---CCCCCEEeccCCCCCccc-CCCCC---CccEE
Q 005709 383 PNLERINLSGSELERL-PATIKQFSQLRYLYLRNCNMLQSLPE-L---PLLLSHLDASNCKRLQSL-PEISS---CLEEL 453 (681)
Q Consensus 383 ~~L~~L~L~~n~l~~l-p~~i~~L~~L~~L~L~~c~~l~~lp~-~---l~~L~~L~l~~c~~l~~l-p~~~~---~L~~L 453 (681)
++|++|++++|.+..+ |..++++++|+.|++++|. +..++. . +++|++|++++|. +..+ |..+. +|+.|
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L 352 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNF-LGSIDSRMFENLDKLEVL 352 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECGGGGTTCTTCCEE
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccccChhHhcCcccCCEEECCCCc-cCCcChhHhcCcccCCEE
Confidence 3455555555555543 4446666666666666643 333322 2 5566666666643 3333 33322 66666
Q ss_pred ecccccccccccccccCCCCCcEEEccCCc
Q 005709 454 DISILEKLSKTTFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 454 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~ 483 (681)
++++|.+.++++..+..+++|++|++++|.
T Consensus 353 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 353 DLSYNHIRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCcccccChhhccccccccEEECCCCc
Confidence 666666666655446666666666666654
No 48
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.74 E-value=1.4e-18 Score=195.88 Aligned_cols=145 Identities=17% Similarity=0.172 Sum_probs=113.2
Q ss_pred cEEEEEeecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCC-C-
Q 005709 257 AIEGIFFDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFS-F- 334 (681)
Q Consensus 257 ~v~~l~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~- 334 (681)
.++.+ +++.+....+.+.+|.++++|++|++++|.+ ....|..+..+ ++|++|++++|.++.+|+. +
T Consensus 27 ~L~~L--~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i--------~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~ 95 (549)
T 2z81_A 27 AMKSL--DLSFNKITYIGHGDLRACANLQVLILKSSRI--------NTIEGDAFYSL-GSLEHLDLSDNHLSSLSSSWFG 95 (549)
T ss_dssp TCCEE--ECCSSCCCEECSSTTSSCTTCCEEECTTSCC--------CEECTTTTTTC-TTCCEEECTTSCCCSCCHHHHT
T ss_pred CccEE--ECcCCccCccChhhhhcCCcccEEECCCCCc--------CccChhhcccc-ccCCEEECCCCccCccCHHHhc
Confidence 45554 4455555556778899999999999999886 44445667777 7899999999999998876 6
Q ss_pred CCCCceEEEcCCCCccc--ccccccccccccccceecc--cC-CcccC--CCCCCCCCcEEEcccCCCcc-cCccccCCC
Q 005709 335 EPNYLIELNLPYSKVEQ--IWIGEKKAFKLKFINLYNS--RY-LTRLP--EFSEIPNLERINLSGSELER-LPATIKQFS 406 (681)
Q Consensus 335 ~l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~~L~l--~~-l~~lp--~~~~l~~L~~L~L~~n~l~~-lp~~i~~L~ 406 (681)
.+++|++|++++|.++. .|..+.. +++|++|++ +. ++.+| .++++++|++|++++|.++. +|..+++++
T Consensus 96 ~l~~L~~L~Ls~n~l~~~~~~~~~~~---l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 172 (549)
T 2z81_A 96 PLSSLKYLNLMGNPYQTLGVTSLFPN---LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR 172 (549)
T ss_dssp TCTTCCEEECTTCCCSSSCSSCSCTT---CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS
T ss_pred cCCCCcEEECCCCcccccchhhhhhc---cCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccc
Confidence 89999999999999985 4667777 999999999 44 67777 38999999999999888885 566777766
Q ss_pred ccceecccc
Q 005709 407 QLRYLYLRN 415 (681)
Q Consensus 407 ~L~~L~L~~ 415 (681)
+|++|++++
T Consensus 173 ~L~~L~l~~ 181 (549)
T 2z81_A 173 DIHHLTLHL 181 (549)
T ss_dssp EEEEEEEEC
T ss_pred cCceEeccc
Confidence 666666655
No 49
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.74 E-value=9.6e-18 Score=194.04 Aligned_cols=213 Identities=19% Similarity=0.106 Sum_probs=161.9
Q ss_pred CcEEEEEeecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCC-C
Q 005709 256 DAIEGIFFDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFS-F 334 (681)
Q Consensus 256 ~~v~~l~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~ 334 (681)
..++.+ +++.+....+.+.+|.++++|++|++++|.+ ....|..+..+ ++|++|++++|.++.+|+. |
T Consensus 25 ~~l~~L--~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--------~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~ 93 (680)
T 1ziw_A 25 TNITVL--NLTHNQLRRLPAANFTRYSQLTSLDVGFNTI--------SKLEPELCQKL-PMLKVLNLQHNELSQLSDKTF 93 (680)
T ss_dssp TTCSEE--ECCSSCCCCCCGGGGGGGTTCSEEECCSSCC--------CCCCTTHHHHC-TTCCEEECCSSCCCCCCTTTT
T ss_pred CCCcEE--ECCCCCCCCcCHHHHhCCCcCcEEECCCCcc--------CccCHHHHhcc-cCcCEEECCCCccCccChhhh
Confidence 345554 4455555567788899999999999998876 44456667777 7899999999999999985 6
Q ss_pred -CCCCceEEEcCCCCccccc-ccccccccccccceecc--cCCcccC-C-CCCCCCCcEEEcccCCCcccCcc-c--cCC
Q 005709 335 -EPNYLIELNLPYSKVEQIW-IGEKKAFKLKFINLYNS--RYLTRLP-E-FSEIPNLERINLSGSELERLPAT-I--KQF 405 (681)
Q Consensus 335 -~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~~L~l--~~l~~lp-~-~~~l~~L~~L~L~~n~l~~lp~~-i--~~L 405 (681)
.+++|++|++++|.++.++ ..+.. +++|++|++ +.+..++ . ++++++|++|++++|.++.+++. + ..+
T Consensus 94 ~~l~~L~~L~L~~n~l~~~~~~~~~~---l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 170 (680)
T 1ziw_A 94 AFCTNLTELHLMSNSIQKIKNNPFVK---QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN 170 (680)
T ss_dssp TTCTTCSEEECCSSCCCCCCSCTTTT---CTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTT
T ss_pred ccCCCCCEEECCCCccCccChhHccc---cCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccc
Confidence 8999999999999998886 45777 999999999 6666654 3 88999999999999999887664 3 356
Q ss_pred CccceeccccccccCcCCCC-------------------------------CCCCCEEeccCCCCCcccCCCCC-----C
Q 005709 406 SQLRYLYLRNCNMLQSLPEL-------------------------------PLLLSHLDASNCKRLQSLPEISS-----C 449 (681)
Q Consensus 406 ~~L~~L~L~~c~~l~~lp~~-------------------------------l~~L~~L~l~~c~~l~~lp~~~~-----~ 449 (681)
++|+.|++++|. +..+++. .++|+.|++++|...+..|..+. +
T Consensus 171 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~ 249 (680)
T 1ziw_A 171 SSLKKLELSSNQ-IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTN 249 (680)
T ss_dssp CEESEEECTTCC-CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSC
T ss_pred ccccEEECCCCc-ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCC
Confidence 889999999864 4444332 15677777777654444454443 3
Q ss_pred ccEEecccccccccccccccCCCCCcEEEccCCc
Q 005709 450 LEELDISILEKLSKTTFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 450 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~ 483 (681)
|+.|++++|.+..+++..++.+++|++|++++|.
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCc
Confidence 8888888888888776667888888888888775
No 50
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.74 E-value=3.2e-17 Score=180.02 Aligned_cols=177 Identities=24% Similarity=0.274 Sum_probs=111.6
Q ss_pred cEEEEEeecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCC-C
Q 005709 257 AIEGIFFDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSF-E 335 (681)
Q Consensus 257 ~v~~l~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~-~ 335 (681)
.++.+.+..+.. ..++ .|.++++|++|++++|.+. .+|.. +.+|++|++++|.++.+|. + .
T Consensus 132 ~L~~L~L~~n~l--~~lp--~~~~l~~L~~L~l~~N~l~---------~lp~~----~~~L~~L~L~~n~l~~l~~-~~~ 193 (454)
T 1jl5_A 132 LLEYLGVSNNQL--EKLP--ELQNSSFLKIIDVDNNSLK---------KLPDL----PPSLEFIAAGNNQLEELPE-LQN 193 (454)
T ss_dssp TCCEEECCSSCC--SSCC--CCTTCTTCCEEECCSSCCS---------CCCCC----CTTCCEEECCSSCCSSCCC-CTT
T ss_pred CCCEEECcCCCC--CCCc--ccCCCCCCCEEECCCCcCc---------ccCCC----cccccEEECcCCcCCcCcc-ccC
Confidence 455544444333 3333 4788888888888887752 23332 2478888888888887773 5 7
Q ss_pred CCCceEEEcCCCCcccccccccccccccccceecc--cCCcccCCCCCCCCCcEEEcccCCCcccCccccCCCccceecc
Q 005709 336 PNYLIELNLPYSKVEQIWIGEKKAFKLKFINLYNS--RYLTRLPEFSEIPNLERINLSGSELERLPATIKQFSQLRYLYL 413 (681)
Q Consensus 336 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~~L~l--~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~~i~~L~~L~~L~L 413 (681)
+++|++|++++|.++.+|.. .++|+.|++ +.+..+|+++.+++|++|++++|.++.+|.. +++|+.|++
T Consensus 194 l~~L~~L~l~~N~l~~l~~~------~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l 264 (454)
T 1jl5_A 194 LPFLTAIYADNNSLKKLPDL------PLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDL---PPSLEALNV 264 (454)
T ss_dssp CTTCCEEECCSSCCSSCCCC------CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSC---CTTCCEEEC
T ss_pred CCCCCEEECCCCcCCcCCCC------cCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCccccc---ccccCEEEC
Confidence 78888888888877776643 346777777 6666777777777777777777777776653 356666666
Q ss_pred ccccccCcCCCCCCCCCEEeccCCCCCcccCCCCCCccEEecccccccc
Q 005709 414 RNCNMLQSLPELPLLLSHLDASNCKRLQSLPEISSCLEELDISILEKLS 462 (681)
Q Consensus 414 ~~c~~l~~lp~~l~~L~~L~l~~c~~l~~lp~~~~~L~~L~l~~n~l~~ 462 (681)
++| .+..+|..+++|+.|++++| .+..+|....+|+.|++++|.+.+
T Consensus 265 ~~N-~l~~l~~~~~~L~~L~ls~N-~l~~l~~~~~~L~~L~l~~N~l~~ 311 (454)
T 1jl5_A 265 RDN-YLTDLPELPQSLTFLDVSEN-IFSGLSELPPNLYYLNASSNEIRS 311 (454)
T ss_dssp CSS-CCSCCCCCCTTCCEEECCSS-CCSEESCCCTTCCEEECCSSCCSE
T ss_pred CCC-cccccCcccCcCCEEECcCC-ccCcccCcCCcCCEEECcCCcCCc
Confidence 663 35556665566666666664 344444333345555555554444
No 51
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.73 E-value=2.1e-17 Score=174.90 Aligned_cols=206 Identities=14% Similarity=0.152 Sum_probs=94.7
Q ss_pred CcEEEEEeecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCC-
Q 005709 256 DAIEGIFFDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSF- 334 (681)
Q Consensus 256 ~~v~~l~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~- 334 (681)
..++.+.+..+.... + ++|.++++|++|++++|.... ++. +..+ ++|++|++++|.....++.+
T Consensus 88 ~~L~~L~L~~n~i~~--~--~~~~~l~~L~~L~l~~n~i~~---------~~~-~~~l-~~L~~L~l~~n~~~~~~~~~~ 152 (347)
T 4fmz_A 88 VKLTNLYIGTNKITD--I--SALQNLTNLRELYLNEDNISD---------ISP-LANL-TKMYSLNLGANHNLSDLSPLS 152 (347)
T ss_dssp TTCCEEECCSSCCCC--C--GGGTTCTTCSEEECTTSCCCC---------CGG-GTTC-TTCCEEECTTCTTCCCCGGGT
T ss_pred CcCCEEEccCCcccC--c--hHHcCCCcCCEEECcCCcccC---------chh-hccC-CceeEEECCCCCCcccccchh
Confidence 445554444433322 2 357777777777777666422 111 2333 44555555555322222223
Q ss_pred CCCCceEEEcCCCCcccccccccccccccccceecc--cCCcccCC----------------------CCCCCCCcEEEc
Q 005709 335 EPNYLIELNLPYSKVEQIWIGEKKAFKLKFINLYNS--RYLTRLPE----------------------FSEIPNLERINL 390 (681)
Q Consensus 335 ~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~~L~l--~~l~~lp~----------------------~~~l~~L~~L~L 390 (681)
.+++|++|++++|.+..++. +.. +++|+.|++ +.+..++. ++.+++|++|++
T Consensus 153 ~l~~L~~L~l~~~~~~~~~~-~~~---l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l 228 (347)
T 4fmz_A 153 NMTGLNYLTVTESKVKDVTP-IAN---LTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKI 228 (347)
T ss_dssp TCTTCCEEECCSSCCCCCGG-GGG---CTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEEC
T ss_pred hCCCCcEEEecCCCcCCchh-hcc---CCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEc
Confidence 44555555555554444433 222 444444444 33444444 444445555555
Q ss_pred ccCCCcccCccccCCCccceeccccccccCcCCCC--CCCCCEEeccCCCCCcccCCC--CCCccEEecccccccccccc
Q 005709 391 SGSELERLPATIKQFSQLRYLYLRNCNMLQSLPEL--PLLLSHLDASNCKRLQSLPEI--SSCLEELDISILEKLSKTTF 466 (681)
Q Consensus 391 ~~n~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~--l~~L~~L~l~~c~~l~~lp~~--~~~L~~L~l~~n~l~~~~~~ 466 (681)
++|.++.+|. +..+++|++|++++| .+..++.. +++|++|++++| .+..+|.. +.+|+.|++++|.+.+.++.
T Consensus 229 ~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 305 (347)
T 4fmz_A 229 GNNKITDLSP-LANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQLGNEDME 305 (347)
T ss_dssp CSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCGGGHH
T ss_pred cCCccCCCcc-hhcCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCcCCCcChh
Confidence 5444444443 444555555555543 23333322 445555555543 23333321 11455555555555444443
Q ss_pred cccCCCCCcEEEccCCc
Q 005709 467 PIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 467 ~l~~l~~L~~L~l~~c~ 483 (681)
.++.+++|+.|++++|.
T Consensus 306 ~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 306 VIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp HHHTCTTCSEEECCSSS
T ss_pred HhhccccCCEEEccCCc
Confidence 34455555555555544
No 52
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.73 E-value=3.5e-17 Score=167.24 Aligned_cols=200 Identities=24% Similarity=0.233 Sum_probs=117.7
Q ss_pred cCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCCCCCCceEEEcCCCCcccccccccc
Q 005709 279 ANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSFEPNYLIELNLPYSKVEQIWIGEKK 358 (681)
Q Consensus 279 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~~~~~ 358 (681)
..+++|+.|++++|.+ ..+ .++..+ ++|++|++++|.++.+|....+++|++|++++|.++.++...
T Consensus 38 ~~l~~L~~L~l~~~~i---------~~~-~~l~~l-~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-- 104 (272)
T 3rfs_A 38 NELNSIDQIIANNSDI---------KSV-QGIQYL-PNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGV-- 104 (272)
T ss_dssp HHHTTCCEEECTTSCC---------CCC-TTGGGC-TTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTT--
T ss_pred ccccceeeeeeCCCCc---------ccc-cccccC-CCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhH--
Confidence 3455566666555442 111 123333 455555555555555442225555555555555555443321
Q ss_pred cccccccceecccCCcccCCCCCCCCCcEEEcccCCCcccCcc-ccCCCccceeccccccccCcCCCC----CCCCCEEe
Q 005709 359 AFKLKFINLYNSRYLTRLPEFSEIPNLERINLSGSELERLPAT-IKQFSQLRYLYLRNCNMLQSLPEL----PLLLSHLD 433 (681)
Q Consensus 359 l~~L~~L~~L~l~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~~-i~~L~~L~~L~L~~c~~l~~lp~~----l~~L~~L~ 433 (681)
++++++|++|++++|.++.+|+. ++++++|++|++++| .+..+|.. +++|+.|+
T Consensus 105 --------------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 163 (272)
T 3rfs_A 105 --------------------FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELD 163 (272)
T ss_dssp --------------------TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred --------------------hcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEE
Confidence 45566666666666666655544 556666666666663 34444432 55666666
Q ss_pred ccCCCCCcccCCC----CCCccEEecccccccccccccccCCCCCcEEEccCCccccccccccChHHHHHhhHHHHHHHH
Q 005709 434 ASNCKRLQSLPEI----SSCLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCWELKENKILEDSELRIQHMAIASLRLF 509 (681)
Q Consensus 434 l~~c~~l~~lp~~----~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~~L~l~~~~l~~~~i~~l~~L~~L~~~ 509 (681)
+++| .+..+|.. +.+|+.|++++|.+.++++..+..+++|+.|++++|+.. +.+++|++|+..
T Consensus 164 l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------------~~~~~l~~l~~~ 230 (272)
T 3rfs_A 164 LSYN-QLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------------CTCPGIRYLSEW 230 (272)
T ss_dssp CCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------------CCTTTTHHHHHH
T ss_pred CCCC-CcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc------------ccCcHHHHHHHH
Confidence 6664 34444442 238899999999999888877899999999999988632 124456666655
Q ss_pred HhhccCCCCeEEccCCCCCccccccc
Q 005709 510 YEKEQLYCPSILLPGSEIPKWFAFQN 535 (681)
Q Consensus 510 ~~~~~~~~~~~~l~G~~iP~w~~~~~ 535 (681)
.+. +.| .||.|++...
T Consensus 231 ~n~---------~~g-~ip~~~~~~~ 246 (272)
T 3rfs_A 231 INK---------HSG-VVRNSAGSVA 246 (272)
T ss_dssp HHH---------TGG-GBBCTTSCBC
T ss_pred HHh---------CCC-cccCcccccC
Confidence 554 566 7888876543
No 53
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.73 E-value=6.6e-18 Score=176.22 Aligned_cols=190 Identities=16% Similarity=0.066 Sum_probs=156.8
Q ss_pred cCCCCCceEEEeCCCCCCCcccccccccCccc--cccccCccEEEecCCCCCCCCCCC-CC-----CCceEEEcCCCCcc
Q 005709 279 ANMSSLTLLKFYMPECNGVPIMSSKLHLNQDL--EYLPKKLRYLHWHEYPLKTLPFSF-EP-----NYLIELNLPYSKVE 350 (681)
Q Consensus 279 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l--~~l~~~L~~L~l~~~~l~~lp~~~-~l-----~~L~~L~L~~n~l~ 350 (681)
.++++|++|++++|.+ .+.+|..+ ..+ ++|++|++++|.++.+|..+ .+ ++|++|+|++|.++
T Consensus 92 ~~l~~L~~L~L~~n~l--------~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~ 162 (312)
T 1wwl_A 92 LGISGLQELTLENLEV--------TGTAPPPLLEATG-PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL 162 (312)
T ss_dssp HTTSCCCEEEEEEEBC--------BSCCCCCSSSCCS-CCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCC
T ss_pred cCcCCccEEEccCCcc--------cchhHHHHHHhcC-CCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCc
Confidence 3799999999999987 56777776 555 78999999999999998766 55 89999999999999
Q ss_pred ccc-ccccccccccccceecc--cCCcc---cC-CC--CCCCCCcEEEcccCCCcccC---cc-ccCCCccceecccccc
Q 005709 351 QIW-IGEKKAFKLKFINLYNS--RYLTR---LP-EF--SEIPNLERINLSGSELERLP---AT-IKQFSQLRYLYLRNCN 417 (681)
Q Consensus 351 ~lp-~~~~~l~~L~~L~~L~l--~~l~~---lp-~~--~~l~~L~~L~L~~n~l~~lp---~~-i~~L~~L~~L~L~~c~ 417 (681)
.++ ..+.. +++|++|++ +.+.. +| .+ +.+++|++|++++|.++.+| .. +.++++|++|++++|.
T Consensus 163 ~~~~~~~~~---l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~ 239 (312)
T 1wwl_A 163 NFSCEQVRV---FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS 239 (312)
T ss_dssp CCCTTTCCC---CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC
T ss_pred cchHHHhcc---CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc
Confidence 886 67777 999999999 54432 23 34 89999999999999999544 33 4688999999999965
Q ss_pred ccCcCCCC----CCCCCEEeccCCCCCcccCCCCC-CccEEecccccccccccccccCCCCCcEEEccCCc
Q 005709 418 MLQSLPEL----PLLLSHLDASNCKRLQSLPEISS-CLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 418 ~l~~lp~~----l~~L~~L~l~~c~~l~~lp~~~~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~ 483 (681)
..+..|.. +++|++|++++| .+..+|..+. +|+.|++++|.++++|. +..+++|++|++++|+
T Consensus 240 l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~~L~~L~Ls~N~l~~~p~--~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 240 LRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKGLPAKLSVLDLSYNRLDRNPS--PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSSCCSEEEEEECCSSCCCSCCC--TTTSCEEEEEECTTCT
T ss_pred CCcccchhhhhhcCCCCEEECCCC-ccChhhhhccCCceEEECCCCCCCCChh--HhhCCCCCEEeccCCC
Confidence 43333322 689999999996 5679998887 99999999999999954 8999999999999876
No 54
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.73 E-value=1.4e-17 Score=173.49 Aligned_cols=185 Identities=16% Similarity=0.259 Sum_probs=154.5
Q ss_pred hcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCC-CCCCceEEEcCCCCcccccccc
Q 005709 278 FANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSF-EPNYLIELNLPYSKVEQIWIGE 356 (681)
Q Consensus 278 f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~lp~~~ 356 (681)
+..+++|+.|+++++.+ ..++ ++..+ ++|++|++++|.++.+|. + .+++|++|+|++|.++.++ .+
T Consensus 37 ~~~l~~L~~L~l~~~~i---------~~l~-~~~~l-~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~ 103 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGV---------TTIE-GVQYL-NNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AI 103 (308)
T ss_dssp HHHHHTCCEEECTTSCC---------CCCT-TGGGC-TTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GG
T ss_pred HHHcCCcCEEEeeCCCc---------cCch-hhhcc-CCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hh
Confidence 34578899999998774 3344 46666 789999999999999888 6 8999999999999998876 45
Q ss_pred cccccccccceecc--cCCcccCCCCCCCCCcEEEcccCCCcccCccccCCCccceeccccccccCcCCCC--CCCCCEE
Q 005709 357 KKAFKLKFINLYNS--RYLTRLPEFSEIPNLERINLSGSELERLPATIKQFSQLRYLYLRNCNMLQSLPEL--PLLLSHL 432 (681)
Q Consensus 357 ~~l~~L~~L~~L~l--~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~--l~~L~~L 432 (681)
.. +++|+.|++ +.++.+|.++.+++|++|++++|.++.++. ++.+++|+.|++++| .+..+|.. +++|+.|
T Consensus 104 ~~---l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L 178 (308)
T 1h6u_A 104 AG---LQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA-QVSDLTPLANLSKLTTL 178 (308)
T ss_dssp TT---CTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEE
T ss_pred cC---CCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCC-cCCCChhhcCCCCCCEE
Confidence 55 999999999 888888889999999999999999998876 899999999999995 56666643 7899999
Q ss_pred eccCCCCCcccCCC--CCCccEEecccccccccccccccCCCCCcEEEccCCc
Q 005709 433 DASNCKRLQSLPEI--SSCLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 433 ~l~~c~~l~~lp~~--~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~ 483 (681)
++++| .+..+|.. +.+|+.|++++|.+.++++ +..+++|+.|++++|.
T Consensus 179 ~l~~n-~l~~~~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 179 KADDN-KISDISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQT 228 (308)
T ss_dssp ECCSS-CCCCCGGGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEE
T ss_pred ECCCC-ccCcChhhcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCe
Confidence 99986 56666652 2399999999999999884 8999999999998876
No 55
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.73 E-value=2.7e-17 Score=181.57 Aligned_cols=185 Identities=15% Similarity=0.213 Sum_probs=98.3
Q ss_pred hcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCCCCCCceEEEcCCCCccccccccc
Q 005709 278 FANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSFEPNYLIELNLPYSKVEQIWIGEK 357 (681)
Q Consensus 278 f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~~~~ 357 (681)
|.++++|++|++++|.+ ..++. +..+ ++|++|++++|.++.+|....+++|++|++++|.++.++. +.
T Consensus 86 ~~~l~~L~~L~l~~n~l---------~~~~~-~~~l-~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~ 153 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQI---------ADITP-LANL-TNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA-LS 153 (466)
T ss_dssp GTTCTTCCEEECCSSCC---------CCCGG-GTTC-TTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGG-GT
T ss_pred hhccccCCEEECCCCcc---------ccChh-hcCC-CCCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCCChh-hc
Confidence 55666666666665553 11222 4444 5566666666666666552266666666666666655542 33
Q ss_pred ccccccccceecc-cCCcccCCCCCCCCCcEEEcccCCCcccCccccCCCccceeccccccccCcCCCC--CCCCCEEec
Q 005709 358 KAFKLKFINLYNS-RYLTRLPEFSEIPNLERINLSGSELERLPATIKQFSQLRYLYLRNCNMLQSLPEL--PLLLSHLDA 434 (681)
Q Consensus 358 ~l~~L~~L~~L~l-~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~--l~~L~~L~l 434 (681)
. +++|+.|++ +.+..++.++++++|++|++++|.++.++ .+.++++|++|++++|. +..++.. +++|+.|++
T Consensus 154 ~---l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l 228 (466)
T 1o6v_A 154 G---LTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQ-ISDITPLGILTNLDELSL 228 (466)
T ss_dssp T---CTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGGGGGCTTCCEEEC
T ss_pred c---CCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCc-ccccccccccCCCCEEEC
Confidence 3 555555555 44444444566666666666666666554 35666666666666643 3333222 555555655
Q ss_pred cCCCCCcccCCC--CCCccEEecccccccccccccccCCCCCcEEEccCC
Q 005709 435 SNCKRLQSLPEI--SSCLEELDISILEKLSKTTFPIKHGCSLMQFEFQNC 482 (681)
Q Consensus 435 ~~c~~l~~lp~~--~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c 482 (681)
++| .+..++.. +.+|+.|++++|.+.++++ +..+++|+.|++++|
T Consensus 229 ~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n 275 (466)
T 1o6v_A 229 NGN-QLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN 275 (466)
T ss_dssp CSS-CCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSS
T ss_pred CCC-CcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCC
Confidence 554 23333321 1155555555555555443 445555555555554
No 56
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.73 E-value=8.4e-18 Score=199.18 Aligned_cols=155 Identities=17% Similarity=0.286 Sum_probs=116.1
Q ss_pred CCcEEEEEeecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCccccccccc-CccccccccCccEEEecCCCCCCC-CC
Q 005709 255 TDAIEGIFFDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHL-NQDLEYLPKKLRYLHWHEYPLKTL-PF 332 (681)
Q Consensus 255 ~~~v~~l~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l-~~~l~~l~~~L~~L~l~~~~l~~l-p~ 332 (681)
...++.+.+..+ ....+.+..|.++++|++|++++|.. ...+ |..+..+ ++|++|++++|.++.+ |.
T Consensus 23 p~~l~~LdLs~N--~i~~i~~~~~~~l~~L~~LdLs~n~~--------~~~i~~~~f~~L-~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 23 LNTTERLLLSFN--YIRTVTASSFPFLEQLQLLELGSQYT--------PLTIDKEAFRNL-PNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CTTCCEEEEESC--CCCEECSSSCSSCCSCSEEEECTTCC--------CCEECTTTTSSC-TTCCEEECTTCCCCEECTT
T ss_pred CCCcCEEECCCC--cCCccChhHCcccccCeEEeCCCCCC--------ccccCHHHhcCC-CCCCEEECCCCcCcccCHh
Confidence 356666655544 44456778899999999999998854 4556 5667777 7899999999999886 66
Q ss_pred CC-CCCCceEEEcCCCCccc-cccc--ccccccccccceecc--cCCcccC---CCCCCCCCcEEEcccCCCccc-Cccc
Q 005709 333 SF-EPNYLIELNLPYSKVEQ-IWIG--EKKAFKLKFINLYNS--RYLTRLP---EFSEIPNLERINLSGSELERL-PATI 402 (681)
Q Consensus 333 ~~-~l~~L~~L~L~~n~l~~-lp~~--~~~l~~L~~L~~L~l--~~l~~lp---~~~~l~~L~~L~L~~n~l~~l-p~~i 402 (681)
.| ++++|++|+|++|.++. +|.. +.+ +++|++|++ +.+..++ .|+++++|++|+|++|.++.+ |..+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~---L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l 168 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRN---LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL 168 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSS---CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGG
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccc---cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHc
Confidence 67 89999999999999985 4544 666 999999999 6666653 289999999999998888753 4556
Q ss_pred cCC--CccceeccccccccCcCC
Q 005709 403 KQF--SQLRYLYLRNCNMLQSLP 423 (681)
Q Consensus 403 ~~L--~~L~~L~L~~c~~l~~lp 423 (681)
+.+ ++|+.|++++|......|
T Consensus 169 ~~l~~~~L~~L~L~~n~l~~~~~ 191 (844)
T 3j0a_A 169 EPLQGKTLSFFSLAANSLYSRVS 191 (844)
T ss_dssp HHHHHCSSCCCEECCSBSCCCCC
T ss_pred ccccCCccceEECCCCccccccc
Confidence 665 666767666655444343
No 57
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=3.7e-17 Score=163.55 Aligned_cols=187 Identities=16% Similarity=0.160 Sum_probs=149.5
Q ss_pred CCCceEEEeCCCCCCCcccccccccCc-cccccccCccEEEecCCC-CCCCCCC-C-CCCCceEEEcCC-CCcccccc-c
Q 005709 282 SSLTLLKFYMPECNGVPIMSSKLHLNQ-DLEYLPKKLRYLHWHEYP-LKTLPFS-F-EPNYLIELNLPY-SKVEQIWI-G 355 (681)
Q Consensus 282 ~~L~~L~l~~n~~~~~~~~~~~~~l~~-~l~~l~~~L~~L~l~~~~-l~~lp~~-~-~l~~L~~L~L~~-n~l~~lp~-~ 355 (681)
++|+.|++++|.+ ..++. .+..+ ++|++|++++|. ++.+|+. | ++++|++|++++ |.++.+|. .
T Consensus 31 ~~l~~L~l~~n~l---------~~i~~~~~~~l-~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 31 PSTQTLKLIETHL---------RTIPSHAFSNL-PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp TTCCEEEEESCCC---------SEECTTTTTTC-TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred CcccEEEEeCCcc---------eEECHHHccCC-CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 4899999998885 33443 45556 789999999997 8888874 5 889999999998 89988874 4
Q ss_pred ccccccccccceecc--cCCcccCCCCCCCCCc---EEEcccC-CCcccCcc-ccCCCccc-eeccccccccCcCCCC--
Q 005709 356 EKKAFKLKFINLYNS--RYLTRLPEFSEIPNLE---RINLSGS-ELERLPAT-IKQFSQLR-YLYLRNCNMLQSLPEL-- 425 (681)
Q Consensus 356 ~~~l~~L~~L~~L~l--~~l~~lp~~~~l~~L~---~L~L~~n-~l~~lp~~-i~~L~~L~-~L~L~~c~~l~~lp~~-- 425 (681)
+.. +++|++|++ +.++.+|+++.+++|+ +|++++| .++.+|.. +.++++|+ .|++++ +.+..+|..
T Consensus 101 f~~---l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~-n~l~~i~~~~~ 176 (239)
T 2xwt_C 101 LKE---LPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN-NGFTSVQGYAF 176 (239)
T ss_dssp EEC---CTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS-CCCCEECTTTT
T ss_pred hCC---CCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC-CCCcccCHhhc
Confidence 566 889999999 7788888888888888 9999988 89988875 88899999 999998 456688765
Q ss_pred -CCCCCEEeccCCCCCcccCCC----C-CCccEEecccccccccccccccCCCCCcEEEccCCccc
Q 005709 426 -PLLLSHLDASNCKRLQSLPEI----S-SCLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCWEL 485 (681)
Q Consensus 426 -l~~L~~L~l~~c~~l~~lp~~----~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~~L 485 (681)
.++|+.|++++|..+..+|.. + .+|+.|++++|.++.+|+. .+++|+.|+++++..|
T Consensus 177 ~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 177 NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTWTL 239 (239)
T ss_dssp TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC---
T ss_pred CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCccCC
Confidence 467899999997557777643 3 4799999999999998875 6788999999887643
No 58
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.72 E-value=1.8e-17 Score=182.11 Aligned_cols=180 Identities=19% Similarity=0.149 Sum_probs=134.7
Q ss_pred HhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCC-CCCCceEEEcCCCCccccccc
Q 005709 277 AFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSF-EPNYLIELNLPYSKVEQIWIG 355 (681)
Q Consensus 277 ~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~lp~~ 355 (681)
.|..+++|++|++++|.+.+ +| +..+ ++|++|++++|.++.+| + .+++|++|++++|.++.+|
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~---------~~--~~~l-~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~-- 122 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITT---------LD--LSQN-TNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD-- 122 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSC---------CC--CTTC-TTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--
T ss_pred hhcccCCCCEEEccCCcCCe---------Ec--cccC-CCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--
Confidence 67888888888888877522 22 4455 67888888888888875 5 7888888888888888775
Q ss_pred ccccccccccceecc--cCCcccCCCCCCCCCcEEEcccC-CCcccCccccCCCccceeccccccccCcCCCC-CCCCCE
Q 005709 356 EKKAFKLKFINLYNS--RYLTRLPEFSEIPNLERINLSGS-ELERLPATIKQFSQLRYLYLRNCNMLQSLPEL-PLLLSH 431 (681)
Q Consensus 356 ~~~l~~L~~L~~L~l--~~l~~lp~~~~l~~L~~L~L~~n-~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~-l~~L~~ 431 (681)
+.. +++|++|++ +.++.+| ++.+++|++|+++.| .+..+ .++.+++|+.|++++| .++.+|-. +++|+.
T Consensus 123 ~~~---l~~L~~L~l~~N~l~~l~-l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~l~~l~l~~l~~L~~ 195 (457)
T 3bz5_A 123 VSQ---NPLLTYLNCARNTLTEID-VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN-KITELDVSQNKLLNR 195 (457)
T ss_dssp CTT---CTTCCEEECTTSCCSCCC-CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS-CCCCCCCTTCTTCCE
T ss_pred CCC---CCcCCEEECCCCccceec-cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC-ccceeccccCCCCCE
Confidence 555 888888888 6677764 778888888888865 55556 4778888888888884 56667633 778888
Q ss_pred EeccCCCCCcccCCC-CCCccEEecccccccccccccccCCCCCcEEEccCCc
Q 005709 432 LDASNCKRLQSLPEI-SSCLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 432 L~l~~c~~l~~lp~~-~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~ 483 (681)
|++++| .+..++-. +.+|+.|++++|.++++| ++.+++|+.|++++|.
T Consensus 196 L~l~~N-~l~~~~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 196 LNCDTN-NITKLDLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp EECCSS-CCSCCCCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSC
T ss_pred EECcCC-cCCeeccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCc
Confidence 888885 45555321 228888888888888876 6788888888888875
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.72 E-value=7.8e-18 Score=176.10 Aligned_cols=199 Identities=15% Similarity=0.088 Sum_probs=161.8
Q ss_pred ecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCC-CCCCceEE
Q 005709 264 DLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSF-EPNYLIEL 342 (681)
Q Consensus 264 ~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L 342 (681)
+++...........+..+++|+.|++++|.+ ....|..+..+ ++|++|++++|.++.+++ + .+++|++|
T Consensus 16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l--------~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L 85 (317)
T 3o53_A 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPL--------SQISAADLAPF-TKLELLNLSSNVLYETLD-LESLSTLRTL 85 (317)
T ss_dssp SCCTTTHHHHHHHHHTTGGGCSEEECTTSCC--------CCCCHHHHTTC-TTCCEEECTTSCCEEEEE-ETTCTTCCEE
T ss_pred eccccchhhhHHHHhccCCCCCEEECcCCcc--------CcCCHHHhhCC-CcCCEEECCCCcCCcchh-hhhcCCCCEE
Confidence 3343433444456677888999999999986 33344566677 789999999999988776 6 89999999
Q ss_pred EcCCCCcccccccccccccccccceecc--cCCcccCCCCCCCCCcEEEcccCCCcccCc-cccCCCccceecccccccc
Q 005709 343 NLPYSKVEQIWIGEKKAFKLKFINLYNS--RYLTRLPEFSEIPNLERINLSGSELERLPA-TIKQFSQLRYLYLRNCNML 419 (681)
Q Consensus 343 ~L~~n~l~~lp~~~~~l~~L~~L~~L~l--~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~-~i~~L~~L~~L~L~~c~~l 419 (681)
++++|.++.++. .++|+.|++ +.+..++. ..+++|++|++++|.++.+++ .++.+++|++|++++|. +
T Consensus 86 ~Ls~n~l~~l~~-------~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l 156 (317)
T 3o53_A 86 DLNNNYVQELLV-------GPSIETLHAANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-I 156 (317)
T ss_dssp ECCSSEEEEEEE-------CTTCCEEECCSSCCSEEEE-CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC-C
T ss_pred ECcCCccccccC-------CCCcCEEECCCCccCCcCc-cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC-C
Confidence 999999987763 689999999 77777764 347889999999999998865 68999999999999964 5
Q ss_pred CcCC-C----CCCCCCEEeccCCCCCcccCCCCC--CccEEecccccccccccccccCCCCCcEEEccCCc
Q 005709 420 QSLP-E----LPLLLSHLDASNCKRLQSLPEISS--CLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 420 ~~lp-~----~l~~L~~L~l~~c~~l~~lp~~~~--~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~ 483 (681)
..++ . .+++|++|++++| .+..+|.... +|+.|++++|.+.++|+. +..+++|+.|++++|.
T Consensus 157 ~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 157 DTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNK 225 (317)
T ss_dssp CEEEGGGGGGGTTTCCEEECTTS-CCCEEECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSC
T ss_pred CcccHHHHhhccCcCCEEECCCC-cCcccccccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCc
Confidence 5443 2 2689999999996 5667766543 999999999999999998 9999999999999986
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.72 E-value=1.1e-16 Score=181.62 Aligned_cols=199 Identities=24% Similarity=0.211 Sum_probs=129.9
Q ss_pred CcEEEEEeecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCCC
Q 005709 256 DAIEGIFFDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSFE 335 (681)
Q Consensus 256 ~~v~~l~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~ 335 (681)
.+++.+.+..+.. ..++. .+++|++|++++|.+.. +|. .+++|+.|++++|.++.+|..
T Consensus 81 ~~L~~L~Ls~N~l--~~lp~----~l~~L~~L~Ls~N~l~~---------l~~----~l~~L~~L~L~~N~l~~lp~~-- 139 (622)
T 3g06_A 81 PELRTLEVSGNQL--TSLPV----LPPGLLELSIFSNPLTH---------LPA----LPSGLCKLWIFGNQLTSLPVL-- 139 (622)
T ss_dssp TTCCEEEECSCCC--SCCCC----CCTTCCEEEECSCCCCC---------CCC----CCTTCCEEECCSSCCSCCCCC--
T ss_pred CCCCEEEcCCCcC--CcCCC----CCCCCCEEECcCCcCCC---------CCC----CCCCcCEEECCCCCCCcCCCC--
Confidence 4455554444433 33332 67889999998887532 333 235677777777777777664
Q ss_pred CCCceEEEcCCCCccccccccccccc--------------ccccceecc--cCCcccCCCCCCCCCcEEEcccCCCcccC
Q 005709 336 PNYLIELNLPYSKVEQIWIGEKKAFK--------------LKFINLYNS--RYLTRLPEFSEIPNLERINLSGSELERLP 399 (681)
Q Consensus 336 l~~L~~L~L~~n~l~~lp~~~~~l~~--------------L~~L~~L~l--~~l~~lp~~~~l~~L~~L~L~~n~l~~lp 399 (681)
+++|++|+|++|.++.+|..+.++.. +++|+.|++ +.++.+|.. +++|+.|++++|.++.+|
T Consensus 140 l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~l~~l~ 217 (622)
T 3g06_A 140 PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLP 217 (622)
T ss_dssp CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCC
T ss_pred CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCc--cchhhEEECcCCcccccC
Confidence 36677777777777666554333222 256666666 555555542 356666666666666666
Q ss_pred ccccCCCccceeccccccccCcCCCCCCCCCEEeccCCCCCcccCCCCCCccEEecccccccccccccccCCCCCcEEEc
Q 005709 400 ATIKQFSQLRYLYLRNCNMLQSLPELPLLLSHLDASNCKRLQSLPEISSCLEELDISILEKLSKTTFPIKHGCSLMQFEF 479 (681)
Q Consensus 400 ~~i~~L~~L~~L~L~~c~~l~~lp~~l~~L~~L~l~~c~~l~~lp~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 479 (681)
.. +++|+.|++++ +.++.+|..+++|+.|++++| .+..+|..+.+|+.|++++|.++.+|.. +.++++|+.|++
T Consensus 218 ~~---~~~L~~L~Ls~-N~L~~lp~~l~~L~~L~Ls~N-~L~~lp~~~~~L~~L~Ls~N~L~~lp~~-l~~l~~L~~L~L 291 (622)
T 3g06_A 218 AL---PSGLKELIVSG-NRLTSLPVLPSELKELMVSGN-RLTSLPMLPSGLLSLSVYRNQLTRLPES-LIHLSSETTVNL 291 (622)
T ss_dssp CC---CTTCCEEECCS-SCCSCCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCCSCCGG-GGGSCTTCEEEC
T ss_pred CC---CCCCCEEEccC-CccCcCCCCCCcCcEEECCCC-CCCcCCcccccCcEEeCCCCCCCcCCHH-HhhccccCEEEe
Confidence 43 36777788877 456677766778888888775 5667777656888888888888877766 778888887777
Q ss_pred cCCc
Q 005709 480 QNCW 483 (681)
Q Consensus 480 ~~c~ 483 (681)
++|+
T Consensus 292 ~~N~ 295 (622)
T 3g06_A 292 EGNP 295 (622)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 6655
No 61
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.72 E-value=3.8e-17 Score=182.85 Aligned_cols=121 Identities=14% Similarity=0.077 Sum_probs=71.7
Q ss_pred ccccceecc--cCCcc-cCC-CCCCCCCcEEEcccCCCcc---cCccccCCCccceeccccccccCcCCCC----CCCCC
Q 005709 362 LKFINLYNS--RYLTR-LPE-FSEIPNLERINLSGSELER---LPATIKQFSQLRYLYLRNCNMLQSLPEL----PLLLS 430 (681)
Q Consensus 362 L~~L~~L~l--~~l~~-lp~-~~~l~~L~~L~L~~n~l~~---lp~~i~~L~~L~~L~L~~c~~l~~lp~~----l~~L~ 430 (681)
+++|++|++ +.+.. +|. ++.+++|++|++++|.++. +|..++++++|++|++++|.....+|.. +++|+
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~ 402 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence 344444444 33333 332 5555555555555555553 3344556666666666654433325532 56677
Q ss_pred EEeccCCCCCcccCCCCC-CccEEecccccccccccccccCCCCCcEEEccCCc
Q 005709 431 HLDASNCKRLQSLPEISS-CLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 431 ~L~l~~c~~l~~lp~~~~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~ 483 (681)
.|++++|...+.+|..++ +|+.|++++|.++.+|.. +..+++|++|++++|.
T Consensus 403 ~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 403 SLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQ-VVKLEALQELNVASNQ 455 (520)
T ss_dssp EEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSSC
T ss_pred EEECcCCCCCcchhhhhcccCCEEECCCCcccccchh-hhcCCCCCEEECCCCc
Confidence 777776655455665554 778888888887777776 6678888888887775
No 62
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.72 E-value=1e-16 Score=181.22 Aligned_cols=121 Identities=15% Similarity=0.063 Sum_probs=75.7
Q ss_pred ccccceecc--cCCcc-cCC-CCCCCCCcEEEcccCCCcccC---ccccCCCccceeccccccccCcCCCC----CCCCC
Q 005709 362 LKFINLYNS--RYLTR-LPE-FSEIPNLERINLSGSELERLP---ATIKQFSQLRYLYLRNCNMLQSLPEL----PLLLS 430 (681)
Q Consensus 362 L~~L~~L~l--~~l~~-lp~-~~~l~~L~~L~L~~n~l~~lp---~~i~~L~~L~~L~L~~c~~l~~lp~~----l~~L~ 430 (681)
+++|++|++ +.+.. +|. ++++++|++|++++|.++.+| ..++++++|++|++++|.....+|.. +++|+
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~ 431 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCC
T ss_pred CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCC
Confidence 344445555 33333 333 555666666666666665433 34566666666666664433335543 56677
Q ss_pred EEeccCCCCCcccCCCCC-CccEEecccccccccccccccCCCCCcEEEccCCc
Q 005709 431 HLDASNCKRLQSLPEISS-CLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 431 ~L~l~~c~~l~~lp~~~~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~ 483 (681)
.|++++|...+.+|..++ +|+.|++++|.++.+|.. +..+++|+.|++++|.
T Consensus 432 ~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~L~~N~ 484 (562)
T 3a79_B 432 VLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKD-VTHLQALQELNVASNQ 484 (562)
T ss_dssp EEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTT-TTSSCCCSEEECCSSC
T ss_pred EEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChh-hcCCCCCCEEECCCCC
Confidence 777777655556666664 788888888888888877 5688888888888876
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.71 E-value=9.1e-17 Score=165.17 Aligned_cols=191 Identities=20% Similarity=0.231 Sum_probs=155.6
Q ss_pred CcEEEEEeecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCC-CCCC-CCC
Q 005709 256 DAIEGIFFDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYP-LKTL-PFS 333 (681)
Q Consensus 256 ~~v~~l~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~-l~~l-p~~ 333 (681)
..++.+. ++.+....+.+..|.++++|+.|++++|.+ ....|..+..+ ++|++|++++|. ++.+ |..
T Consensus 32 ~~l~~L~--l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l--------~~~~~~~~~~l-~~L~~L~l~~n~~l~~~~~~~ 100 (285)
T 1ozn_A 32 AASQRIF--LHGNRISHVPAASFRACRNLTILWLHSNVL--------ARIDAAAFTGL-ALLEQLDLSDNAQLRSVDPAT 100 (285)
T ss_dssp TTCSEEE--CTTSCCCEECTTTTTTCTTCCEEECCSSCC--------CEECTTTTTTC-TTCCEEECCSCTTCCCCCTTT
T ss_pred CCceEEE--eeCCcCCccCHHHcccCCCCCEEECCCCcc--------ceeCHhhcCCc-cCCCEEeCCCCCCccccCHHH
Confidence 3555554 444555557778899999999999999886 44446677777 789999999997 8888 455
Q ss_pred C-CCCCceEEEcCCCCcccc-cccccccccccccceecc--cCCcccCC--CCCCCCCcEEEcccCCCcccCcc-ccCCC
Q 005709 334 F-EPNYLIELNLPYSKVEQI-WIGEKKAFKLKFINLYNS--RYLTRLPE--FSEIPNLERINLSGSELERLPAT-IKQFS 406 (681)
Q Consensus 334 ~-~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~~L~l--~~l~~lp~--~~~l~~L~~L~L~~n~l~~lp~~-i~~L~ 406 (681)
+ .+++|++|++++|.++.+ |..+.. +++|++|++ +.++.+|. ++.+++|++|++++|.++.+|.. +..++
T Consensus 101 ~~~l~~L~~L~l~~n~l~~~~~~~~~~---l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 177 (285)
T 1ozn_A 101 FHGLGRLHTLHLDRCGLQELGPGLFRG---LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177 (285)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTT---CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred hcCCcCCCEEECCCCcCCEECHhHhhC---CcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcc
Confidence 6 899999999999999987 455677 999999999 78888885 89999999999999999998875 99999
Q ss_pred ccceeccccccccCcC-CCC---CCCCCEEeccCCCCCcccCCC-C---CCccEEecccccccc
Q 005709 407 QLRYLYLRNCNMLQSL-PEL---PLLLSHLDASNCKRLQSLPEI-S---SCLEELDISILEKLS 462 (681)
Q Consensus 407 ~L~~L~L~~c~~l~~l-p~~---l~~L~~L~l~~c~~l~~lp~~-~---~~L~~L~l~~n~l~~ 462 (681)
+|+.|++++|. +..+ |.. +++|+.|++++| .+..+|.. + .+|+.|++++|.+..
T Consensus 178 ~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 178 SLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp TCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred ccCEEECCCCc-ccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCccC
Confidence 99999999965 5544 544 789999999996 55566642 3 399999999998764
No 64
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.71 E-value=1.8e-17 Score=187.49 Aligned_cols=100 Identities=23% Similarity=0.186 Sum_probs=48.1
Q ss_pred CCCCcEEEcccCCCcccCccccCCCccceeccccccccCcCCCC-CCCCCEEeccCCCCCcccCC-CCCCccEEeccccc
Q 005709 382 IPNLERINLSGSELERLPATIKQFSQLRYLYLRNCNMLQSLPEL-PLLLSHLDASNCKRLQSLPE-ISSCLEELDISILE 459 (681)
Q Consensus 382 l~~L~~L~L~~n~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~-l~~L~~L~l~~c~~l~~lp~-~~~~L~~L~l~~n~ 459 (681)
+++|+.|++++|.++.+|..+..+ +|+.|++++|. +..+|.. +++|+.|++++|.....++. .+.+|+.|++++|.
T Consensus 281 l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~-~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~ 358 (570)
T 2z63_A 281 LTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCK-FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358 (570)
T ss_dssp GTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCB-CSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSC
T ss_pred cCcccEEEecCccchhhhhhhccC-CccEEeeccCc-ccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCc
Confidence 344444444444444455444444 55555555432 3344432 44555555555443333332 12256666666666
Q ss_pred ccccc--cccccCCCCCcEEEccCCc
Q 005709 460 KLSKT--TFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 460 l~~~~--~~~l~~l~~L~~L~l~~c~ 483 (681)
+.... +..+..+++|++|++++|.
T Consensus 359 l~~~~~~~~~~~~~~~L~~L~l~~n~ 384 (570)
T 2z63_A 359 LSFKGCCSQSDFGTTSLKYLDLSFNG 384 (570)
T ss_dssp CBEEEEEEHHHHTCSCCCEEECCSCS
T ss_pred cCccccccccccccCccCEEECCCCc
Confidence 55442 1225555666666665553
No 65
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.71 E-value=9.7e-17 Score=177.05 Aligned_cols=225 Identities=17% Similarity=0.206 Sum_probs=175.9
Q ss_pred cEEEEEeecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCC-C
Q 005709 257 AIEGIFFDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSF-E 335 (681)
Q Consensus 257 ~v~~l~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~-~ 335 (681)
.++.+.+...... .++ .+..+++|++|++++|.+ ..++. +..+ ++|++|++++|.++.+|+ + .
T Consensus 47 ~l~~L~l~~~~i~--~l~--~~~~l~~L~~L~Ls~n~l---------~~~~~-~~~l-~~L~~L~l~~n~l~~~~~-~~~ 110 (466)
T 1o6v_A 47 QVTTLQADRLGIK--SID--GVEYLNNLTQINFSNNQL---------TDITP-LKNL-TKLVDILMNNNQIADITP-LAN 110 (466)
T ss_dssp TCCEEECCSSCCC--CCT--TGGGCTTCCEEECCSSCC---------CCCGG-GTTC-TTCCEEECCSSCCCCCGG-GTT
T ss_pred cccEEecCCCCCc--cCc--chhhhcCCCEEECCCCcc---------CCchh-hhcc-ccCCEEECCCCccccChh-hcC
Confidence 4555555444332 232 478899999999999885 33333 6666 789999999999999988 6 9
Q ss_pred CCCceEEEcCCCCcccccccccccccccccceecc--cCCcccCCCCCCCCCcEEEcccCCCcccCccccCCCccceecc
Q 005709 336 PNYLIELNLPYSKVEQIWIGEKKAFKLKFINLYNS--RYLTRLPEFSEIPNLERINLSGSELERLPATIKQFSQLRYLYL 413 (681)
Q Consensus 336 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~~L~l--~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~~i~~L~~L~~L~L 413 (681)
+++|++|++++|.++.++. +.. +++|++|++ +.+..+|.++.+++|++|+++ +.+..+++ ++++++|+.|++
T Consensus 111 l~~L~~L~L~~n~l~~~~~-~~~---l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l 184 (466)
T 1o6v_A 111 LTNLTGLTLFNNQITDIDP-LKN---LTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDI 184 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTT---CTTCSEEEEEEEEECCCGGGTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEEC
T ss_pred CCCCCEEECCCCCCCCChH-HcC---CCCCCEEECCCCccCCChhhccCCcccEeecC-CcccCchh-hccCCCCCEEEC
Confidence 9999999999999998876 666 999999999 778888889999999999997 45666654 999999999999
Q ss_pred ccccccCcCCCC--CCCCCEEeccCCCCCcccCC--CCCCccEEecccccccccccccccCCCCCcEEEccCCc------
Q 005709 414 RNCNMLQSLPEL--PLLLSHLDASNCKRLQSLPE--ISSCLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCW------ 483 (681)
Q Consensus 414 ~~c~~l~~lp~~--l~~L~~L~l~~c~~l~~lp~--~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~------ 483 (681)
++|. +..++.. +++|++|++++|. +..++. .+.+|+.|++++|.+.+++. +..+++|+.|++++|.
T Consensus 185 ~~n~-l~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~ 260 (466)
T 1o6v_A 185 SSNK-VSDISVLAKLTNLESLIATNNQ-ISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAP 260 (466)
T ss_dssp CSSC-CCCCGGGGGCTTCSEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECCSSCCCCCGG
T ss_pred cCCc-CCCChhhccCCCCCEEEecCCc-ccccccccccCCCCEEECCCCCcccchh--hhcCCCCCEEECCCCccccchh
Confidence 9964 6666644 8899999999975 444433 23399999999999998753 8899999999999986
Q ss_pred --------cccccccccCh-HHHHHhhHHHHHH
Q 005709 484 --------ELKENKILEDS-ELRIQHMAIASLR 507 (681)
Q Consensus 484 --------~L~l~~~~l~~-~~i~~l~~L~~L~ 507 (681)
.|++++|.+.+ ..+..+++|+.|+
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 293 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNISPLAGLTALTNLE 293 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred hhcCCCCCEEECCCCccCccccccCCCccCeEE
Confidence 56777777655 3355555555543
No 66
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.70 E-value=3.4e-17 Score=179.81 Aligned_cols=187 Identities=21% Similarity=0.174 Sum_probs=99.1
Q ss_pred CHHHhcCCCCCceEEEeCCCCCCCcccccccccCcccccc--------------------------------ccCccEEE
Q 005709 274 SPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYL--------------------------------PKKLRYLH 321 (681)
Q Consensus 274 ~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l--------------------------------~~~L~~L~ 321 (681)
-|.+|+++++|++|++++|.+ .+.+|.++..+ |++|++|+
T Consensus 26 iP~~i~~L~~L~~L~l~~n~~--------~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~~~~L~~L~ 97 (454)
T 1jl5_A 26 MPVEAENVKSKTEYYNAWSEW--------ERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLV 97 (454)
T ss_dssp --------CCHHHHHHHHHHH--------HHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSCCTTCSEEE
T ss_pred CChhHhcccchhhhhccCCcc--------cccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCCcCCCCEEE
Confidence 355677777777777776654 34445444433 23455555
Q ss_pred ecCCCCCCCCCCCCCCCceEEEcCCCCcccccccccccccccccceecc--cCCcccCCCCCCCCCcEEEcccCCCcccC
Q 005709 322 WHEYPLKTLPFSFEPNYLIELNLPYSKVEQIWIGEKKAFKLKFINLYNS--RYLTRLPEFSEIPNLERINLSGSELERLP 399 (681)
Q Consensus 322 l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~~L~l--~~l~~lp~~~~l~~L~~L~L~~n~l~~lp 399 (681)
+++|.++.+|..+ .+|++|++++|.++.+|.. .++|++|++ +.++.+|+++++++|++|++++|.++.+|
T Consensus 98 l~~n~l~~lp~~~--~~L~~L~l~~n~l~~l~~~------~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp 169 (454)
T 1jl5_A 98 ASCNSLTELPELP--QSLKSLLVDNNNLKALSDL------PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLP 169 (454)
T ss_dssp CCSSCCSSCCCCC--TTCCEEECCSSCCSCCCSC------CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCC
T ss_pred ccCCcCCcccccc--CCCcEEECCCCccCcccCC------CCCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccC
Confidence 5555554444321 3344444444444333221 145666666 55555666666666666666666666655
Q ss_pred ccccCCCccceeccccccccCcCCCC--CCCCCEEeccCCCCCcccCCCCCCccEEecccccccccccccccCCCCCcEE
Q 005709 400 ATIKQFSQLRYLYLRNCNMLQSLPEL--PLLLSHLDASNCKRLQSLPEISSCLEELDISILEKLSKTTFPIKHGCSLMQF 477 (681)
Q Consensus 400 ~~i~~L~~L~~L~L~~c~~l~~lp~~--l~~L~~L~l~~c~~l~~lp~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 477 (681)
..+ .+|++|++++| .+..+|.. +++|+.|++++| .+..+|....+|++|++++|.+..+| . ++.+++|++|
T Consensus 170 ~~~---~~L~~L~L~~n-~l~~l~~~~~l~~L~~L~l~~N-~l~~l~~~~~~L~~L~l~~n~l~~lp-~-~~~l~~L~~L 242 (454)
T 1jl5_A 170 DLP---PSLEFIAAGNN-QLEELPELQNLPFLTAIYADNN-SLKKLPDLPLSLESIVAGNNILEELP-E-LQNLPFLTTI 242 (454)
T ss_dssp CCC---TTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSS-CCSSCCCCCTTCCEEECCSSCCSSCC-C-CTTCTTCCEE
T ss_pred CCc---ccccEEECcCC-cCCcCccccCCCCCCEEECCCC-cCCcCCCCcCcccEEECcCCcCCccc-c-cCCCCCCCEE
Confidence 433 35666666653 34445533 556666666664 34455555556666666666666655 2 6666777777
Q ss_pred EccCCc
Q 005709 478 EFQNCW 483 (681)
Q Consensus 478 ~l~~c~ 483 (681)
++++|.
T Consensus 243 ~l~~N~ 248 (454)
T 1jl5_A 243 YADNNL 248 (454)
T ss_dssp ECCSSC
T ss_pred ECCCCc
Confidence 776654
No 67
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.70 E-value=1.6e-16 Score=163.96 Aligned_cols=166 Identities=22% Similarity=0.175 Sum_probs=142.3
Q ss_pred CCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCCCCCCceEEEcCCCCccccccccccccc
Q 005709 282 SSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSFEPNYLIELNLPYSKVEQIWIGEKKAFK 361 (681)
Q Consensus 282 ~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~ 361 (681)
++|+.|++++|.+ ....+..+..+ ++|++|++++|.++.+|....+++|++|+|++|.++.+|..+..
T Consensus 31 ~~l~~L~L~~N~l--------~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--- 98 (290)
T 1p9a_G 31 KDTTILHLSENLL--------YTFSLATLMPY-TRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQT--- 98 (290)
T ss_dssp TTCCEEECTTSCC--------SEEEGGGGTTC-TTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTT---
T ss_pred CCCCEEEcCCCcC--------CccCHHHhhcC-CCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhcc---
Confidence 6899999998886 44445666666 78999999999999888766889999999999999999988877
Q ss_pred ccccceecc--cCCcccCC--CCCCCCCcEEEcccCCCcccCcc-ccCCCccceeccccccccCcCCCC----CCCCCEE
Q 005709 362 LKFINLYNS--RYLTRLPE--FSEIPNLERINLSGSELERLPAT-IKQFSQLRYLYLRNCNMLQSLPEL----PLLLSHL 432 (681)
Q Consensus 362 L~~L~~L~l--~~l~~lp~--~~~l~~L~~L~L~~n~l~~lp~~-i~~L~~L~~L~L~~c~~l~~lp~~----l~~L~~L 432 (681)
+++|++|++ +.++.+|. |.++++|++|+|++|.++.+|.. +..+++|+.|++++ +.++.+|.. +++|+.|
T Consensus 99 l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L 177 (290)
T 1p9a_G 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN-NNLTELPAGLLNGLENLDTL 177 (290)
T ss_dssp CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCSCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC-CcCCccCHHHhcCcCCCCEE
Confidence 999999999 88888873 89999999999999999998876 68899999999998 567888864 7899999
Q ss_pred eccCCCCCcccCCCCC---CccEEeccccccc
Q 005709 433 DASNCKRLQSLPEISS---CLEELDISILEKL 461 (681)
Q Consensus 433 ~l~~c~~l~~lp~~~~---~L~~L~l~~n~l~ 461 (681)
++++| .+..+|..+. +|+.|++++|.+.
T Consensus 178 ~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 178 LLQEN-SLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp ECCSS-CCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred ECCCC-cCCccChhhcccccCCeEEeCCCCcc
Confidence 99984 6788998876 7999999998764
No 68
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.70 E-value=3.3e-17 Score=173.98 Aligned_cols=204 Identities=17% Similarity=0.167 Sum_probs=158.8
Q ss_pred eecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCc-cccccccCccEEEecCCCCCCCCCC-C-CCCCc
Q 005709 263 FDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQ-DLEYLPKKLRYLHWHEYPLKTLPFS-F-EPNYL 339 (681)
Q Consensus 263 l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~-~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L 339 (681)
.+.+......++. .+ .++|+.|++++|.+ ..++. .+..+ ++|++|++++|.++.+++. | ++++|
T Consensus 36 c~~~~~~l~~iP~-~~--~~~L~~L~l~~n~i---------~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (353)
T 2z80_A 36 CKGSSGSLNSIPS-GL--TEAVKSLDLSNNRI---------TYISNSDLQRC-VNLQALVLTSNGINTIEEDSFSSLGSL 102 (353)
T ss_dssp EECCSTTCSSCCT-TC--CTTCCEEECTTSCC---------CEECTTTTTTC-TTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred eeCCCCCcccccc-cc--cccCcEEECCCCcC---------cccCHHHhccC-CCCCEEECCCCccCccCHhhcCCCCCC
Confidence 3455444444443 22 25899999999885 33444 56666 7899999999999988654 6 89999
Q ss_pred eEEEcCCCCccccccc-ccccccccccceecc--cCCcccCC---CCCCCCCcEEEcccC-CCcccC-ccccCCCcccee
Q 005709 340 IELNLPYSKVEQIWIG-EKKAFKLKFINLYNS--RYLTRLPE---FSEIPNLERINLSGS-ELERLP-ATIKQFSQLRYL 411 (681)
Q Consensus 340 ~~L~L~~n~l~~lp~~-~~~l~~L~~L~~L~l--~~l~~lp~---~~~l~~L~~L~L~~n-~l~~lp-~~i~~L~~L~~L 411 (681)
++|++++|.++.+|.. +.. +++|++|++ +.++.+|. ++.+++|++|++++| .++.++ ..++++++|++|
T Consensus 103 ~~L~Ls~n~l~~~~~~~~~~---l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 103 EHLDLSYNYLSNLSSSWFKP---LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179 (353)
T ss_dssp CEEECCSSCCSSCCHHHHTT---CTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred CEEECCCCcCCcCCHhHhCC---CccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE
Confidence 9999999999998876 677 999999999 78888885 889999999999976 688775 569999999999
Q ss_pred ccccccccCcCCCC---CCCCCEEeccCCCCCcccCCC----CCCccEEecccccccccccc------------------
Q 005709 412 YLRNCNMLQSLPEL---PLLLSHLDASNCKRLQSLPEI----SSCLEELDISILEKLSKTTF------------------ 466 (681)
Q Consensus 412 ~L~~c~~l~~lp~~---l~~L~~L~l~~c~~l~~lp~~----~~~L~~L~l~~n~l~~~~~~------------------ 466 (681)
++++|...+..|.. +++|++|++++| .+..+|.. +.+|+.|++++|.+.+.+..
T Consensus 180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~ 258 (353)
T 2z80_A 180 EIDASDLQSYEPKSLKSIQNVSHLILHMK-QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRN 258 (353)
T ss_dssp EEEETTCCEECTTTTTTCSEEEEEEEECS-CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEES
T ss_pred ECCCCCcCccCHHHHhccccCCeecCCCC-ccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccc
Confidence 99996644444554 678999999996 46777764 34899999999998875432
Q ss_pred -------------cccCCCCCcEEEccCCc
Q 005709 467 -------------PIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 467 -------------~l~~l~~L~~L~l~~c~ 483 (681)
.+.++++|+.|++++|.
T Consensus 259 ~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~ 288 (353)
T 2z80_A 259 VKITDESLFQVMKLLNQISGLLELEFSRNQ 288 (353)
T ss_dssp CBCCHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred ccccCcchhhhHHHHhcccCCCEEECCCCC
Confidence 14567788888888775
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=4.9e-17 Score=180.27 Aligned_cols=189 Identities=17% Similarity=0.099 Sum_probs=156.0
Q ss_pred HHHhcCCC----CCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCC-CCCCceEEEcCCCCc
Q 005709 275 PQAFANMS----SLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSF-EPNYLIELNLPYSKV 349 (681)
Q Consensus 275 ~~~f~~l~----~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l 349 (681)
+..+..+. +|+.|++++|.+ ....|..+..+ ++|++|++++|.++.+++ + .+++|++|+|++|.+
T Consensus 23 ~~~l~~l~~~~~~L~~L~Ls~n~l--------~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l 92 (487)
T 3oja_A 23 KQALASLRQSAWNVKELDLSGNPL--------SQISAADLAPF-TKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYV 92 (487)
T ss_dssp HHHHHTTSTTGGGCCEEECCSSCC--------CCCCGGGGTTC-TTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEE
T ss_pred HHHHHHhcccCCCccEEEeeCCcC--------CCCCHHHHhCC-CCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcC
Confidence 34444444 899999999986 44445667777 799999999999988776 6 999999999999999
Q ss_pred ccccccccccccccccceecc--cCCcccCCCCCCCCCcEEEcccCCCccc-CccccCCCccceeccccccccCcCCCC-
Q 005709 350 EQIWIGEKKAFKLKFINLYNS--RYLTRLPEFSEIPNLERINLSGSELERL-PATIKQFSQLRYLYLRNCNMLQSLPEL- 425 (681)
Q Consensus 350 ~~lp~~~~~l~~L~~L~~L~l--~~l~~lp~~~~l~~L~~L~L~~n~l~~l-p~~i~~L~~L~~L~L~~c~~l~~lp~~- 425 (681)
+.+|. .++|+.|++ +.+..+|. ..+++|++|+|++|.++.+ |..++++++|++|+|++|...+..|..
T Consensus 93 ~~l~~-------~~~L~~L~L~~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 164 (487)
T 3oja_A 93 QELLV-------GPSIETLHAANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164 (487)
T ss_dssp EEEEE-------CTTCCEEECCSSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred CCCCC-------CCCcCEEECcCCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHH
Confidence 98763 588999999 77777764 3568999999999999977 557999999999999996544434433
Q ss_pred ---CCCCCEEeccCCCCCcccCCCCC--CccEEecccccccccccccccCCCCCcEEEccCCc
Q 005709 426 ---PLLLSHLDASNCKRLQSLPEISS--CLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 426 ---l~~L~~L~l~~c~~l~~lp~~~~--~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~ 483 (681)
+++|+.|++++| .+..+|.... +|+.|++++|.++++|+. +..+++|+.|++++|.
T Consensus 165 ~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 165 AASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNK 225 (487)
T ss_dssp GGGTTTCCEEECTTS-CCCEEECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSC
T ss_pred hhhCCcccEEecCCC-ccccccccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCc
Confidence 689999999996 4666665533 999999999999999998 9999999999999986
No 70
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.69 E-value=3.6e-16 Score=171.80 Aligned_cols=162 Identities=15% Similarity=0.139 Sum_probs=120.9
Q ss_pred ccccccCccEEEecCCCCCCCCCCC-CCCCceEEEcCCCCcccccccccccccccccceecc--cCCcccCCCCCCCCCc
Q 005709 310 LEYLPKKLRYLHWHEYPLKTLPFSF-EPNYLIELNLPYSKVEQIWIGEKKAFKLKFINLYNS--RYLTRLPEFSEIPNLE 386 (681)
Q Consensus 310 l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~~L~l--~~l~~lp~~~~l~~L~ 386 (681)
+..+ ++|++|++++|.++.+| + .+++|++|++++|.++.++ +.. +++|+.|++ +.++.+| ++.+++|+
T Consensus 166 ~~~l-~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~~--l~~---l~~L~~L~Ls~N~l~~ip-~~~l~~L~ 236 (457)
T 3bz5_A 166 VTPQ-TQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLD--LNQ---NIQLTFLDCSSNKLTEID-VTPLTQLT 236 (457)
T ss_dssp CTTC-TTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCCC--CTT---CTTCSEEECCSSCCSCCC-CTTCTTCS
T ss_pred cccC-CcCCEEECCCCccceec--cccCCCCCEEECcCCcCCeec--ccc---CCCCCEEECcCCcccccC-ccccCCCC
Confidence 3344 67888888888888877 5 7778888888888887763 455 888888888 7777777 78888888
Q ss_pred EEEcccCCCcccCcc-ccCCC-------ccceeccccccccCcCCCC-CCCCCEEeccCCCCCcccCCCC----------
Q 005709 387 RINLSGSELERLPAT-IKQFS-------QLRYLYLRNCNMLQSLPEL-PLLLSHLDASNCKRLQSLPEIS---------- 447 (681)
Q Consensus 387 ~L~L~~n~l~~lp~~-i~~L~-------~L~~L~L~~c~~l~~lp~~-l~~L~~L~l~~c~~l~~lp~~~---------- 447 (681)
+|++++|.++.+|.. +.+|+ +|+.|++++|..++.+|.. +++|+.|++++|..++.+|...
T Consensus 237 ~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~ 316 (457)
T 3bz5_A 237 YFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQ 316 (457)
T ss_dssp EEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTT
T ss_pred EEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhh
Confidence 888888888877632 44443 5566777777767777644 6888888888887777766422
Q ss_pred -CCccEEecccccccccccccccCCCCCcEEEccCCc
Q 005709 448 -SCLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 448 -~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~ 483 (681)
.+|+.|++++|.+++++ ++++++|+.|++++|.
T Consensus 317 ~~~L~~L~L~~N~l~~l~---l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 317 NPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp CTTCCEEECTTCCCSCCC---CTTCTTCSEEECCSSC
T ss_pred cccCCEEECCCCcccccc---cccCCcCcEEECCCCC
Confidence 17888888888888863 7888899988888876
No 71
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.68 E-value=2.1e-16 Score=187.18 Aligned_cols=209 Identities=19% Similarity=0.155 Sum_probs=143.0
Q ss_pred cEEEEEeecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCC-CCCC-
Q 005709 257 AIEGIFFDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTL-PFSF- 334 (681)
Q Consensus 257 ~v~~l~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~l-p~~~- 334 (681)
.++.+ +++.+....+.+..|.++++|+.|++++|.+ ....|..+..+ ++|++|++++|.++.+ |..|
T Consensus 267 ~L~~L--~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i--------~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~ 335 (844)
T 3j0a_A 267 SVRHL--DLSHGFVFSLNSRVFETLKDLKVLNLAYNKI--------NKIADEAFYGL-DNLQVLNLSYNLLGELYSSNFY 335 (844)
T ss_dssp CCCEE--ECTTCCCCEECSCCSSSCCCCCEEEEESCCC--------CEECTTTTTTC-SSCCEEEEESCCCSCCCSCSCS
T ss_pred CccEE--ECCCCcccccChhhhhcCCCCCEEECCCCcC--------CCCChHHhcCC-CCCCEEECCCCCCCccCHHHhc
Confidence 34443 4455555556677888888999999988875 44445566666 6888888888888876 4456
Q ss_pred CCCCceEEEcCCCCcccccc-cccccccccccceecc--cCCcccCCCCCCCCCcEEEcccCCCcccCcc----------
Q 005709 335 EPNYLIELNLPYSKVEQIWI-GEKKAFKLKFINLYNS--RYLTRLPEFSEIPNLERINLSGSELERLPAT---------- 401 (681)
Q Consensus 335 ~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~~L~l--~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~~---------- 401 (681)
.+++|++|++++|.++.++. .+.. +++|+.|++ +.++.++. +++|+.|++++|.++.+|..
T Consensus 336 ~l~~L~~L~L~~N~i~~~~~~~~~~---l~~L~~L~Ls~N~l~~i~~---~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls 409 (844)
T 3j0a_A 336 GLPKVAYIDLQKNHIAIIQDQTFKF---LEKLQTLDLRDNALTTIHF---IPSIPDIFLSGNKLVTLPKINLTANLIHLS 409 (844)
T ss_dssp SCTTCCEEECCSCCCCCCCSSCSCS---CCCCCEEEEETCCSCCCSS---CCSCSEEEEESCCCCCCCCCCTTCCEEECC
T ss_pred CCCCCCEEECCCCCCCccChhhhcC---CCCCCEEECCCCCCCcccC---CCCcchhccCCCCcccccccccccceeecc
Confidence 88888888888888887754 3555 888888888 55555443 45555565555555554432
Q ss_pred ------------ccCCCccceeccccccccCcCCC-----CCCCCCEEeccCCCCC-----cccCCCC---CCccEEecc
Q 005709 402 ------------IKQFSQLRYLYLRNCNMLQSLPE-----LPLLLSHLDASNCKRL-----QSLPEIS---SCLEELDIS 456 (681)
Q Consensus 402 ------------i~~L~~L~~L~L~~c~~l~~lp~-----~l~~L~~L~l~~c~~l-----~~lp~~~---~~L~~L~l~ 456 (681)
++++++|+.|++++|+ +..++. .+++|+.|++++|... +..|..+ .+|+.|+|+
T Consensus 410 ~N~l~~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls 488 (844)
T 3j0a_A 410 ENRLENLDILYFLLRVPHLQILILNQNR-FSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLN 488 (844)
T ss_dssp SCCCCSSTTHHHHTTCTTCCEEEEESCC-CCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCC
T ss_pred cCccccCchhhhhhcCCccceeeCCCCc-ccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECC
Confidence 4467888888888854 443322 2677888888885432 1112222 378888888
Q ss_pred cccccccccccccCCCCCcEEEccCCc
Q 005709 457 ILEKLSKTTFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 457 ~n~l~~~~~~~l~~l~~L~~L~l~~c~ 483 (681)
+|.++++++..+..+++|+.|++++|.
T Consensus 489 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 515 (844)
T 3j0a_A 489 HNYLNSLPPGVFSHLTALRGLSLNSNR 515 (844)
T ss_dssp HHHHTTCCTTSSSSCCSCSEEEEESCC
T ss_pred CCcccccChhHccchhhhheeECCCCC
Confidence 888888888777888888888888875
No 72
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.68 E-value=2.9e-16 Score=181.62 Aligned_cols=214 Identities=17% Similarity=0.179 Sum_probs=163.2
Q ss_pred CcEEEEEeecCCCcccccCHHHhcCC--CCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCC-CCC
Q 005709 256 DAIEGIFFDLSKINYLHLSPQAFANM--SSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKT-LPF 332 (681)
Q Consensus 256 ~~v~~l~l~~~~~~~~~~~~~~f~~l--~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~-lp~ 332 (681)
..++.+.+..+......+....|..+ ++|+.|++++|.+ ....|..+..+ ++|++|++++|.+.. +|.
T Consensus 353 ~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l--------~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~ 423 (680)
T 1ziw_A 353 INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI--------SKIESDAFSWL-GHLEVLDLGLNEIGQELTG 423 (680)
T ss_dssp TTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCC--------CEECTTTTTTC-TTCCEEECCSSCCEEECCS
T ss_pred cCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCC--------CeEChhhhhCC-CCCCEEeCCCCcCccccCc
Confidence 45666555444333344455555544 5899999998886 44456666666 789999999999874 664
Q ss_pred -CC-CCCCceEEEcCCCCccccc-ccccccccccccceecc--cCC---cccCC-CCCCCCCcEEEcccCCCcccCcc-c
Q 005709 333 -SF-EPNYLIELNLPYSKVEQIW-IGEKKAFKLKFINLYNS--RYL---TRLPE-FSEIPNLERINLSGSELERLPAT-I 402 (681)
Q Consensus 333 -~~-~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~~L~l--~~l---~~lp~-~~~l~~L~~L~L~~n~l~~lp~~-i 402 (681)
.+ .+++|++|++++|.+..++ ..+.. +++|+.|++ +.+ ..+|. ++.+++|++|++++|.++.+|+. +
T Consensus 424 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~ 500 (680)
T 1ziw_A 424 QEWRGLENIFEIYLSYNKYLQLTRNSFAL---VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 500 (680)
T ss_dssp GGGTTCTTCCEEECCSCSEEECCTTTTTT---CTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ccccCcccccEEecCCCCcceeChhhhhc---CcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhh
Confidence 45 8899999999999988664 45666 889999998 333 45675 89999999999999999988765 8
Q ss_pred cCCCccceeccccccccCcCC------------CCCCCCCEEeccCCCCCcccCCC-CC---CccEEecccccccccccc
Q 005709 403 KQFSQLRYLYLRNCNMLQSLP------------ELPLLLSHLDASNCKRLQSLPEI-SS---CLEELDISILEKLSKTTF 466 (681)
Q Consensus 403 ~~L~~L~~L~L~~c~~l~~lp------------~~l~~L~~L~l~~c~~l~~lp~~-~~---~L~~L~l~~n~l~~~~~~ 466 (681)
+.+++|++|++++|. +..++ ..+++|+.|++++| .+..+|.. +. +|+.|++++|.++.+|+.
T Consensus 501 ~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 578 (680)
T 1ziw_A 501 EGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS 578 (680)
T ss_dssp TTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHcccccCcceeECCCCCCCcCCHh
Confidence 899999999999854 55442 12688999999985 66788764 33 899999999999999988
Q ss_pred cccCCCCCcEEEccCCc
Q 005709 467 PIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 467 ~l~~l~~L~~L~l~~c~ 483 (681)
.+.++++|+.|++++|.
T Consensus 579 ~~~~l~~L~~L~L~~N~ 595 (680)
T 1ziw_A 579 VFNNQVSLKSLNLQKNL 595 (680)
T ss_dssp TTTTCTTCCEEECTTSC
T ss_pred HhCCCCCCCEEECCCCc
Confidence 78899999999998875
No 73
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.68 E-value=1.1e-16 Score=183.02 Aligned_cols=124 Identities=23% Similarity=0.315 Sum_probs=101.9
Q ss_pred EeecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccC-ccccccccCccEEEecCCCCCCCCCC-C-CCCC
Q 005709 262 FFDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLN-QDLEYLPKKLRYLHWHEYPLKTLPFS-F-EPNY 338 (681)
Q Consensus 262 ~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~-~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~ 338 (681)
.||++.+....+.+.+|.++++|++|+|++|.+ ..++ ..+..+ ++|++|+|++|+++.+|+. | ++++
T Consensus 56 ~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i---------~~i~~~~f~~L-~~L~~L~Ls~N~l~~l~~~~f~~L~~ 125 (635)
T 4g8a_A 56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI---------QTIEDGAYQSL-SHLSTLILTGNPIQSLALGAFSGLSS 125 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCC---------CEECTTTTTTC-TTCCEEECTTCCCCEECGGGGTTCTT
T ss_pred EEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcC---------CCcChhHhcCC-CCCCEEEccCCcCCCCCHHHhcCCCC
Confidence 456666666778888999999999999999885 3444 456677 7899999999999999876 6 8999
Q ss_pred ceEEEcCCCCccccccc-ccccccccccceecc--cCCccc--CC-CCCCCCCcEEEcccCCCccc
Q 005709 339 LIELNLPYSKVEQIWIG-EKKAFKLKFINLYNS--RYLTRL--PE-FSEIPNLERINLSGSELERL 398 (681)
Q Consensus 339 L~~L~L~~n~l~~lp~~-~~~l~~L~~L~~L~l--~~l~~l--p~-~~~l~~L~~L~L~~n~l~~l 398 (681)
|++|+|++|+++.+|.. +++ +++|++|++ +.+..+ |. ++.+++|++|++++|.++.+
T Consensus 126 L~~L~Ls~N~l~~l~~~~~~~---L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 126 LQKLVAVETNLASLENFPIGH---LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp CCEEECTTSCCCCSTTCCCTT---CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CCEEECCCCcCCCCChhhhhc---CcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 99999999999988764 677 999999999 666654 45 78899999999998877654
No 74
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.68 E-value=3.8e-16 Score=175.07 Aligned_cols=172 Identities=24% Similarity=0.192 Sum_probs=145.5
Q ss_pred CCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCCCCCCceEEEcCCCCcccccccccccccc
Q 005709 283 SLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSFEPNYLIELNLPYSKVEQIWIGEKKAFKL 362 (681)
Q Consensus 283 ~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L 362 (681)
+|+.|++++|.+ ..+|..+ +++|++|++++|.++.+| -.+++|++|+|++|.|+.+|. +.
T Consensus 60 ~L~~L~Ls~n~L---------~~lp~~l---~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~----- 119 (571)
T 3cvr_A 60 QFSELQLNRLNL---------SSLPDNL---PPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE-LP----- 119 (571)
T ss_dssp TCSEEECCSSCC---------SCCCSCC---CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-CC-----
T ss_pred CccEEEeCCCCC---------CccCHhH---cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-hh-----
Confidence 899999998885 2366654 368999999999999999 347899999999999999887 43
Q ss_pred cccceecc--cCCcccCCCCCCCCCcEEEcccCCCcccCccccCCCccceeccccccccCcCCCCCCCCCEEeccCCCCC
Q 005709 363 KFINLYNS--RYLTRLPEFSEIPNLERINLSGSELERLPATIKQFSQLRYLYLRNCNMLQSLPELPLLLSHLDASNCKRL 440 (681)
Q Consensus 363 ~~L~~L~l--~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~L~~L~l~~c~~l 440 (681)
.+|+.|++ |.++.+|. .+++|++|+|++|.++.+|. .+++|++|+|++| .++.+|...++|+.|++++| .+
T Consensus 120 ~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~L~~lp~l~~~L~~L~Ls~N-~L 192 (571)
T 3cvr_A 120 ASLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNN-QLTFLPELPESLEALDVSTN-LL 192 (571)
T ss_dssp TTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-CC
T ss_pred cCCCEEECCCCcCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCC-CCCCcchhhCCCCEEECcCC-CC
Confidence 28999999 88888998 78999999999999999987 6789999999995 57778885579999999995 67
Q ss_pred cccCCCCC-Cc-------cEEecccccccccccccccCCCCCcEEEccCCc
Q 005709 441 QSLPEISS-CL-------EELDISILEKLSKTTFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 441 ~~lp~~~~-~L-------~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~ 483 (681)
..+|. +. +| +.|++++|.++.+|.. +..+++|+.|++++|+
T Consensus 193 ~~lp~-~~~~L~~~~~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 193 ESLPA-VPVRNHHSEETEIFFRCRENRITHIPEN-ILSLDPTCTIILEDNP 241 (571)
T ss_dssp SSCCC-CC--------CCEEEECCSSCCCCCCGG-GGGSCTTEEEECCSSS
T ss_pred Cchhh-HHHhhhcccccceEEecCCCcceecCHH-HhcCCCCCEEEeeCCc
Confidence 78988 55 88 9999999999999998 7789999999887765
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.67 E-value=3e-16 Score=156.97 Aligned_cols=185 Identities=16% Similarity=0.163 Sum_probs=152.8
Q ss_pred cEEEEEeecCCCcccccCHHHhcCCCCCceEEEeCCC-CCCCcccccccccCc-cccccccCccEEEecC-CCCCCCCCC
Q 005709 257 AIEGIFFDLSKINYLHLSPQAFANMSSLTLLKFYMPE-CNGVPIMSSKLHLNQ-DLEYLPKKLRYLHWHE-YPLKTLPFS 333 (681)
Q Consensus 257 ~v~~l~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~-~l~~l~~~L~~L~l~~-~~l~~lp~~ 333 (681)
.++.+.+..+. ...+.+.+|.++++|+.|++++|. . ..++. .+..+ ++|++|++++ |.++.+|..
T Consensus 32 ~l~~L~l~~n~--l~~i~~~~~~~l~~L~~L~l~~n~~l---------~~i~~~~f~~l-~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 32 STQTLKLIETH--LRTIPSHAFSNLPNISRIYVSIDVTL---------QQLESHSFYNL-SKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp TCCEEEEESCC--CSEECTTTTTTCTTCCEEEEECCSSC---------CEECTTTEESC-TTCCEEEEEEETTCCEECTT
T ss_pred cccEEEEeCCc--ceEECHHHccCCCCCcEEeCCCCCCc---------ceeCHhHcCCC-cCCcEEECCCCCCeeEcCHH
Confidence 56665555544 445677789999999999999986 4 34444 55666 7999999998 999999865
Q ss_pred -C-CCCCceEEEcCCCCcccccccccccccccccc---eecc--c-CCcccCC--CCCCCCCc-EEEcccCCCcccCccc
Q 005709 334 -F-EPNYLIELNLPYSKVEQIWIGEKKAFKLKFIN---LYNS--R-YLTRLPE--FSEIPNLE-RINLSGSELERLPATI 402 (681)
Q Consensus 334 -~-~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~---~L~l--~-~l~~lp~--~~~l~~L~-~L~L~~n~l~~lp~~i 402 (681)
| ++++|++|++++|.++.+|. +.. +++|+ .|++ + .++.+|. |.++++|+ +|++++|.++.+|...
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~-~~~---l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~ 175 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPD-LTK---VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYA 175 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCC-CTT---CCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTT
T ss_pred HhCCCCCCCEEeCCCCCCccccc-ccc---ccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhh
Confidence 5 89999999999999999987 677 56665 9999 6 8889885 99999999 9999999999999886
Q ss_pred cCCCccceeccccccccCcCCCC----C-CCCCEEeccCCCCCcccCCC-CCCccEEecccc
Q 005709 403 KQFSQLRYLYLRNCNMLQSLPEL----P-LLLSHLDASNCKRLQSLPEI-SSCLEELDISIL 458 (681)
Q Consensus 403 ~~L~~L~~L~L~~c~~l~~lp~~----l-~~L~~L~l~~c~~l~~lp~~-~~~L~~L~l~~n 458 (681)
...++|+.|++++|..++.+|.. + ++|+.|++++| .+..+|.. +.+|+.|+++++
T Consensus 176 ~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 176 FNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSKGLEHLKELIARNT 236 (239)
T ss_dssp TTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCTTCTTCSEEECTTC
T ss_pred cCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChhHhccCceeeccCc
Confidence 66699999999997568888764 6 89999999994 67788876 459999999876
No 76
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.67 E-value=2.3e-16 Score=178.30 Aligned_cols=146 Identities=15% Similarity=0.138 Sum_probs=73.4
Q ss_pred CCCCceEEEcCCCCcccc---cccccccccccccceecc--cCCcccCC-CCCCCCCcEEEcccCCCcccCc--cccCCC
Q 005709 335 EPNYLIELNLPYSKVEQI---WIGEKKAFKLKFINLYNS--RYLTRLPE-FSEIPNLERINLSGSELERLPA--TIKQFS 406 (681)
Q Consensus 335 ~l~~L~~L~L~~n~l~~l---p~~~~~l~~L~~L~~L~l--~~l~~lp~-~~~l~~L~~L~L~~n~l~~lp~--~i~~L~ 406 (681)
.+++|++|++++|.++.+ |..+.. +++|++|++ +.+..+|. ++.+++|++|++++|.+..+++ .+.+++
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 421 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDFG---TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHHT---CSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCT
T ss_pred cCCCCCEEeCcCCccCccccccccccc---cCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCC
Confidence 345555555555555543 333333 555555555 44444443 5555555555555555554322 355555
Q ss_pred ccceeccccccccCcCCCC---CCCCCEEeccCCCCC-cccCCCCC---CccEEecccccccccccccccCCCCCcEEEc
Q 005709 407 QLRYLYLRNCNMLQSLPEL---PLLLSHLDASNCKRL-QSLPEISS---CLEELDISILEKLSKTTFPIKHGCSLMQFEF 479 (681)
Q Consensus 407 ~L~~L~L~~c~~l~~lp~~---l~~L~~L~l~~c~~l-~~lp~~~~---~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 479 (681)
+|++|++++|......|.. +++|+.|++++|... +.+|..+. +|+.|++++|.+.++++..+.++++|++|++
T Consensus 422 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 501 (570)
T 2z63_A 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501 (570)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeC
Confidence 5555555554433333322 455555555554332 23444433 5555555555555554433555555555555
Q ss_pred cCCc
Q 005709 480 QNCW 483 (681)
Q Consensus 480 ~~c~ 483 (681)
++|.
T Consensus 502 ~~n~ 505 (570)
T 2z63_A 502 ASNQ 505 (570)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 5553
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.66 E-value=1.5e-15 Score=154.86 Aligned_cols=182 Identities=25% Similarity=0.275 Sum_probs=145.8
Q ss_pred eecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccC-ccccccccCccEEEecCCCCCCCCCCC--CCCCc
Q 005709 263 FDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLN-QDLEYLPKKLRYLHWHEYPLKTLPFSF--EPNYL 339 (681)
Q Consensus 263 l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~-~~l~~l~~~L~~L~l~~~~l~~lp~~~--~l~~L 339 (681)
++++......++. .+ .++|+.|++++|.+ ..++ ..+..+ ++|++|++++|.++.+|... .+++|
T Consensus 21 l~~~~~~l~~ip~-~~--~~~l~~L~l~~n~l---------~~~~~~~~~~l-~~L~~L~l~~n~l~~i~~~~~~~l~~L 87 (270)
T 2o6q_A 21 VDCSSKKLTAIPS-NI--PADTKKLDLQSNKL---------SSLPSKAFHRL-TKLRLLYLNDNKLQTLPAGIFKELKNL 87 (270)
T ss_dssp EECTTSCCSSCCS-CC--CTTCSEEECCSSCC---------SCCCTTSSSSC-TTCCEEECCSSCCSCCCTTTTSSCTTC
T ss_pred EEccCCCCCccCC-CC--CCCCCEEECcCCCC---------CeeCHHHhcCC-CCCCEEECCCCccCeeChhhhcCCCCC
Confidence 4555544443332 22 26799999999885 2333 356666 78999999999999998874 79999
Q ss_pred eEEEcCCCCccccccc-ccccccccccceecc--cCCcccCC--CCCCCCCcEEEcccCCCcccCcc-ccCCCccceecc
Q 005709 340 IELNLPYSKVEQIWIG-EKKAFKLKFINLYNS--RYLTRLPE--FSEIPNLERINLSGSELERLPAT-IKQFSQLRYLYL 413 (681)
Q Consensus 340 ~~L~L~~n~l~~lp~~-~~~l~~L~~L~~L~l--~~l~~lp~--~~~l~~L~~L~L~~n~l~~lp~~-i~~L~~L~~L~L 413 (681)
++|++++|.++.+|.. +.. +++|++|++ +.++.+|. |+.+++|++|+|++|.++.+|.. ++.+++|+.|++
T Consensus 88 ~~L~l~~n~l~~~~~~~~~~---l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 164 (270)
T 2o6q_A 88 ETLWVTDNKLQALPIGVFDQ---LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL 164 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTT---CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEECCCCcCCcCCHhHccc---ccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEe
Confidence 9999999999988764 456 999999999 78888875 89999999999999999999876 899999999999
Q ss_pred ccccccCcCCCC----CCCCCEEeccCCCCCcccCCC-C---CCccEEecccccccc
Q 005709 414 RNCNMLQSLPEL----PLLLSHLDASNCKRLQSLPEI-S---SCLEELDISILEKLS 462 (681)
Q Consensus 414 ~~c~~l~~lp~~----l~~L~~L~l~~c~~l~~lp~~-~---~~L~~L~l~~n~l~~ 462 (681)
++| .+..+|.. +++|++|++++| .+..+|.. + .+|+.|++++|.+..
T Consensus 165 ~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 165 YNN-QLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CSS-CCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCC-cCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 994 57777753 789999999996 66777764 3 289999999998654
No 78
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.66 E-value=1.4e-16 Score=165.92 Aligned_cols=192 Identities=13% Similarity=-0.030 Sum_probs=152.2
Q ss_pred hcCCCCCceEEEeCCCCCCCcccccccccCccc--cccccCccEEEecCCCCCCCCCC-----C-CCCCceEEEcCCCCc
Q 005709 278 FANMSSLTLLKFYMPECNGVPIMSSKLHLNQDL--EYLPKKLRYLHWHEYPLKTLPFS-----F-EPNYLIELNLPYSKV 349 (681)
Q Consensus 278 f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l--~~l~~~L~~L~l~~~~l~~lp~~-----~-~l~~L~~L~L~~n~l 349 (681)
+..+++|+.|++++|.+ .+..|..+ ..+ ++|++|++++|.++..... + .+++|++|+|++|.+
T Consensus 87 ~~~~~~L~~L~l~~n~l--------~~~~~~~~~~~~~-~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 157 (310)
T 4glp_A 87 VLAYSRLKELTLEDLKI--------TGTMPPLPLEATG-LALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHS 157 (310)
T ss_dssp HHHHSCCCEEEEESCCC--------BSCCCCCSSSCCC-BCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSS
T ss_pred hcccCceeEEEeeCCEe--------ccchhhhhhhccC-CCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCc
Confidence 33457799999999886 55666666 555 7899999999998863321 2 588999999999999
Q ss_pred cccc-ccccccccccccceecc--cCCcc---cC--C-CCCCCCCcEEEcccCCCcccCcc----ccCCCccceeccccc
Q 005709 350 EQIW-IGEKKAFKLKFINLYNS--RYLTR---LP--E-FSEIPNLERINLSGSELERLPAT----IKQFSQLRYLYLRNC 416 (681)
Q Consensus 350 ~~lp-~~~~~l~~L~~L~~L~l--~~l~~---lp--~-~~~l~~L~~L~L~~n~l~~lp~~----i~~L~~L~~L~L~~c 416 (681)
..++ ..+.. +++|++|++ +.+.. ++ . ++.+++|++|+|++|.++.+|.. ++++++|++|+|++|
T Consensus 158 ~~~~~~~~~~---l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N 234 (310)
T 4glp_A 158 PAFSCEQVRA---FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN 234 (310)
T ss_dssp CCCCTTSCCC---CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS
T ss_pred chhhHHHhcc---CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC
Confidence 8775 56667 999999999 54443 33 2 57899999999999999877653 578899999999996
Q ss_pred cccCcCCCC------CCCCCEEeccCCCCCcccCCCCC-CccEEecccccccccccccccCCCCCcEEEccCCcc
Q 005709 417 NMLQSLPEL------PLLLSHLDASNCKRLQSLPEISS-CLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCWE 484 (681)
Q Consensus 417 ~~l~~lp~~------l~~L~~L~l~~c~~l~~lp~~~~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~~ 484 (681)
......|.. +++|++|++++| .+..+|..+. +|+.|++++|.++++|. +..+++|+.|++++|+-
T Consensus 235 ~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 235 SLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGLPAKLRVLDLSSNRLNRAPQ--PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCCCSCCSCEECCSCCCCSCCC--TTSCCCCSCEECSSTTT
T ss_pred CCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhhcCCCCEEECCCCcCCCCch--hhhCCCccEEECcCCCC
Confidence 544444644 379999999995 6678998777 99999999999999865 68899999999998864
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.66 E-value=5.9e-16 Score=161.12 Aligned_cols=188 Identities=14% Similarity=0.189 Sum_probs=153.5
Q ss_pred cEEEEEeecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCCCC
Q 005709 257 AIEGIFFDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSFEP 336 (681)
Q Consensus 257 ~v~~l~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l 336 (681)
.++.+.+..... ..+. .+..+++|+.|++++|.+ ..++. +..+ ++|++|++++|.++.+|....+
T Consensus 42 ~L~~L~l~~~~i--~~l~--~~~~l~~L~~L~L~~n~i---------~~~~~-~~~l-~~L~~L~L~~n~l~~~~~~~~l 106 (308)
T 1h6u_A 42 GITTLSAFGTGV--TTIE--GVQYLNNLIGLELKDNQI---------TDLAP-LKNL-TKITELELSGNPLKNVSAIAGL 106 (308)
T ss_dssp TCCEEECTTSCC--CCCT--TGGGCTTCCEEECCSSCC---------CCCGG-GTTC-CSCCEEECCSCCCSCCGGGTTC
T ss_pred CcCEEEeeCCCc--cCch--hhhccCCCCEEEccCCcC---------CCChh-HccC-CCCCEEEccCCcCCCchhhcCC
Confidence 455555444333 3332 688999999999999885 33444 6666 7899999999999998753499
Q ss_pred CCceEEEcCCCCcccccccccccccccccceecc--cCCcccCCCCCCCCCcEEEcccCCCcccCccccCCCccceeccc
Q 005709 337 NYLIELNLPYSKVEQIWIGEKKAFKLKFINLYNS--RYLTRLPEFSEIPNLERINLSGSELERLPATIKQFSQLRYLYLR 414 (681)
Q Consensus 337 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~~L~l--~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~~i~~L~~L~~L~L~ 414 (681)
++|++|++++|.++.++. +.. +++|+.|++ +.++.+|.++.+++|++|++++|.++.++. +..+++|+.|+++
T Consensus 107 ~~L~~L~l~~n~l~~~~~-l~~---l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~ 181 (308)
T 1h6u_A 107 QSIKTLDLTSTQITDVTP-LAG---LSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKAD 181 (308)
T ss_dssp TTCCEEECTTSCCCCCGG-GTT---CTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred CCCCEEECCCCCCCCchh-hcC---CCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECC
Confidence 999999999999998875 666 999999999 888888889999999999999999999887 9999999999999
Q ss_pred cccccCcCCCC--CCCCCEEeccCCCCCcccCCC--CCCccEEecccccccccccc
Q 005709 415 NCNMLQSLPEL--PLLLSHLDASNCKRLQSLPEI--SSCLEELDISILEKLSKTTF 466 (681)
Q Consensus 415 ~c~~l~~lp~~--l~~L~~L~l~~c~~l~~lp~~--~~~L~~L~l~~n~l~~~~~~ 466 (681)
+| .+..+|.. +++|++|++++| .+..+|.. +.+|+.|++++|.+...|..
T Consensus 182 ~n-~l~~~~~l~~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 182 DN-KISDISPLASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp SS-CCCCCGGGGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEEEEEECCCEE
T ss_pred CC-ccCcChhhcCCCCCCEEEccCC-ccCccccccCCCCCCEEEccCCeeecCCee
Confidence 95 56777654 889999999996 55666642 22999999999999887765
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.65 E-value=5.8e-16 Score=158.36 Aligned_cols=190 Identities=21% Similarity=0.263 Sum_probs=152.5
Q ss_pred cEEEEEeecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCC-C-
Q 005709 257 AIEGIFFDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFS-F- 334 (681)
Q Consensus 257 ~v~~l~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~- 334 (681)
.++.+ +++.+....+.+..|.++++|++|++++|.+ ....+..+..+ ++|++|++++|.++.++.. +
T Consensus 29 ~l~~L--~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l--------~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~ 97 (276)
T 2z62_A 29 STKNL--DLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--------QTIEDGAYQSL-SHLSTLILTGNPIQSLALGAFS 97 (276)
T ss_dssp TCCEE--ECTTCCCCEECTTTTTTCTTCSEEECTTCCC--------CEECTTTTTTC-TTCCEEECTTCCCCEECTTTTT
T ss_pred CccEE--ECCCCcccccCHhHhccccCCcEEECCCCcC--------CccCHHHccCC-cCCCEEECCCCccCccChhhhc
Confidence 45544 5555555667777899999999999999885 33333456666 7899999999999988754 6
Q ss_pred CCCCceEEEcCCCCcccccc-cccccccccccceecc--cCCcc--cCC-CCCCCCCcEEEcccCCCcccCc-cccCCCc
Q 005709 335 EPNYLIELNLPYSKVEQIWI-GEKKAFKLKFINLYNS--RYLTR--LPE-FSEIPNLERINLSGSELERLPA-TIKQFSQ 407 (681)
Q Consensus 335 ~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~~L~l--~~l~~--lp~-~~~l~~L~~L~L~~n~l~~lp~-~i~~L~~ 407 (681)
.+++|++|++++|.+..++. .+.. +++|++|++ +.++. +|. ++.+++|++|++++|.++.++. .+..+++
T Consensus 98 ~l~~L~~L~l~~n~l~~~~~~~~~~---l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 174 (276)
T 2z62_A 98 GLSSLQKLVAVETNLASLENFPIGH---LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174 (276)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTT---CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT
T ss_pred CCccccEEECCCCCccccCchhccc---CCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhh
Confidence 89999999999999998865 5666 999999999 77776 565 9999999999999999998764 5777777
Q ss_pred cc----eeccccccccCcCCCC---CCCCCEEeccCCCCCcccCCCC-C---CccEEecccccccc
Q 005709 408 LR----YLYLRNCNMLQSLPEL---PLLLSHLDASNCKRLQSLPEIS-S---CLEELDISILEKLS 462 (681)
Q Consensus 408 L~----~L~L~~c~~l~~lp~~---l~~L~~L~l~~c~~l~~lp~~~-~---~L~~L~l~~n~l~~ 462 (681)
|+ .|++++ +.+..+|.. ..+|+.|++++| .+..+|... . +|+.|++++|.+..
T Consensus 175 L~~l~l~L~ls~-n~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 175 MPLLNLSLDLSL-NPMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CTTCCEEEECCS-SCCCEECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred ccccceeeecCC-CcccccCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCcccc
Confidence 77 889998 557777655 458999999996 577777653 2 89999999998764
No 81
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.65 E-value=5.8e-16 Score=174.31 Aligned_cols=186 Identities=18% Similarity=0.118 Sum_probs=110.9
Q ss_pred CCCCceEEEeCCCCCCCcccccccccCcccc-ccccCccEEEecCCCCCC-CC---CCC-CCCCceEEEcCCCCcccccc
Q 005709 281 MSSLTLLKFYMPECNGVPIMSSKLHLNQDLE-YLPKKLRYLHWHEYPLKT-LP---FSF-EPNYLIELNLPYSKVEQIWI 354 (681)
Q Consensus 281 l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~-~l~~~L~~L~l~~~~l~~-lp---~~~-~l~~L~~L~L~~n~l~~lp~ 354 (681)
+.+|+.|++++|.. ..+|..+. .+ ++|++|++++|.+.. +| ..+ .+++|++|+|++|+++.++.
T Consensus 309 ~~~L~~L~l~~n~l---------~~ip~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 378 (549)
T 2z81_A 309 LEKVKRITVENSKV---------FLVPCSFSQHL-KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK 378 (549)
T ss_dssp STTCCEEEEESSCC---------CCCCHHHHHHC-TTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHH
T ss_pred cccceEEEeccCcc---------ccCCHHHHhcC-ccccEEEccCCccccccccchhhhhccccCcEEEccCCccccccc
Confidence 44555555555542 34444442 23 566666666666654 22 223 55666666666666665542
Q ss_pred ---cccccccccccceecc--cCCcccCC-CCCCCCCcEEEcccCCCcccCccccCCCccceeccccccccCcCCCCCCC
Q 005709 355 ---GEKKAFKLKFINLYNS--RYLTRLPE-FSEIPNLERINLSGSELERLPATIKQFSQLRYLYLRNCNMLQSLPELPLL 428 (681)
Q Consensus 355 ---~~~~l~~L~~L~~L~l--~~l~~lp~-~~~l~~L~~L~L~~n~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~ 428 (681)
.+.. +++|++|++ +.++.+|. ++.+++|++|++++|.++.+|..+. ++|++|++++| .+..++..+++
T Consensus 379 ~~~~~~~---l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~--~~L~~L~Ls~N-~l~~~~~~l~~ 452 (549)
T 2z81_A 379 TGEILLT---LKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP--QTLEVLDVSNN-NLDSFSLFLPR 452 (549)
T ss_dssp HHHHGGG---CTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSC--TTCSEEECCSS-CCSCCCCCCTT
T ss_pred chhhhhc---CCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchhc--CCceEEECCCC-ChhhhcccCCh
Confidence 2444 666666666 55666665 6666666666666666666655442 46666666663 45555555667
Q ss_pred CCEEeccCCCCCcccCCCCC--CccEEecccccccccccccccCCCCCcEEEccCCc
Q 005709 429 LSHLDASNCKRLQSLPEISS--CLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 429 L~~L~l~~c~~l~~lp~~~~--~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~ 483 (681)
|++|++++| .+..+|.... +|+.|++++|.++++++..+..+++|+.|++++|+
T Consensus 453 L~~L~Ls~N-~l~~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 453 LQELYISRN-KLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CCEEECCSS-CCSSCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred hcEEECCCC-ccCcCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCC
Confidence 777777764 4556665322 67777777777777666656677777777776665
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.65 E-value=2.7e-15 Score=151.19 Aligned_cols=162 Identities=21% Similarity=0.233 Sum_probs=107.3
Q ss_pred CccEEEecCCCCCCCCCCCCCCCceEEEcCCCCcccccc-cccccccccccceecc--cCCcccCC--CCCCCCCcEEEc
Q 005709 316 KLRYLHWHEYPLKTLPFSFEPNYLIELNLPYSKVEQIWI-GEKKAFKLKFINLYNS--RYLTRLPE--FSEIPNLERINL 390 (681)
Q Consensus 316 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~~L~l--~~l~~lp~--~~~l~~L~~L~L 390 (681)
..+.++++++.++.+|..+. .+|+.|+|++|.++.++. .+.. +++|++|++ +.+..++. |..+++|++|+|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~---l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRG---LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTT---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcC---cccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 34555556665665555442 355666666666555433 3444 566666666 45555543 666777777777
Q ss_pred ccCCCcccCcc-ccCCCccceeccccccccCcCCCC----CCCCCEEeccCCCCCcccCCC-C---CCccEEeccccccc
Q 005709 391 SGSELERLPAT-IKQFSQLRYLYLRNCNMLQSLPEL----PLLLSHLDASNCKRLQSLPEI-S---SCLEELDISILEKL 461 (681)
Q Consensus 391 ~~n~l~~lp~~-i~~L~~L~~L~L~~c~~l~~lp~~----l~~L~~L~l~~c~~l~~lp~~-~---~~L~~L~l~~n~l~ 461 (681)
++|.++.+|.. ++.+++|++|+|++| .+..+|.. +++|+.|++++| .+..+|.. + .+|+.|++++|.+.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCcccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 77777766643 567777777777763 45566543 567777777774 55566552 3 28999999999999
Q ss_pred ccccccccCCCCCcEEEccCCc
Q 005709 462 SKTTFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 462 ~~~~~~l~~l~~L~~L~l~~c~ 483 (681)
.+++..+..+++|+.|++++|+
T Consensus 169 ~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 169 SVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSCC
T ss_pred ccCHHHHhCCCCCCEEEeeCCc
Confidence 9988778999999999998876
No 83
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.64 E-value=1.5e-15 Score=161.08 Aligned_cols=209 Identities=17% Similarity=0.132 Sum_probs=161.7
Q ss_pred cEEEEEeecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCcc-ccccccCccEEEecCCCCCCCCCC-C
Q 005709 257 AIEGIFFDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQD-LEYLPKKLRYLHWHEYPLKTLPFS-F 334 (681)
Q Consensus 257 ~v~~l~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~-l~~l~~~L~~L~l~~~~l~~lp~~-~ 334 (681)
.++.+.+.. +....+++.+|.++++|+.|+|++|.. ...+|.+ +..++.-++.+.+++|.++.+|+. |
T Consensus 31 ~l~~L~Ls~--N~i~~i~~~~f~~l~~L~~L~Ls~N~i--------~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f 100 (350)
T 4ay9_X 31 NAIELRFVL--TKLRVIQKGAFSGFGDLEKIEISQNDV--------LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF 100 (350)
T ss_dssp TCSEEEEES--CCCSEECTTSSTTCTTCCEEEEECCTT--------CCEECTTSBCSCTTCCEEEEEEETTCCEECTTSB
T ss_pred CCCEEEccC--CcCCCcCHHHHcCCCCCCEEECcCCCC--------CCccChhHhhcchhhhhhhcccCCcccccCchhh
Confidence 455555544 444567788899999999999998875 4556543 456644456678888999998665 5
Q ss_pred -CCCCceEEEcCCCCccccccc-ccccccccccceecc---cCCcccCC--CCCCC-CCcEEEcccCCCcccCccccCCC
Q 005709 335 -EPNYLIELNLPYSKVEQIWIG-EKKAFKLKFINLYNS---RYLTRLPE--FSEIP-NLERINLSGSELERLPATIKQFS 406 (681)
Q Consensus 335 -~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~~L~l---~~l~~lp~--~~~l~-~L~~L~L~~n~l~~lp~~i~~L~ 406 (681)
.+++|++|++++|.++.+|.. ... ..++..+++ +.+..+|. |..+. .|+.|+|++|.++.+|..+....
T Consensus 101 ~~l~~L~~L~l~~n~l~~~~~~~~~~---~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~ 177 (350)
T 4ay9_X 101 QNLPNLQYLLISNTGIKHLPDVHKIH---SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGT 177 (350)
T ss_dssp CCCTTCCEEEEEEECCSSCCCCTTCC---BSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTE
T ss_pred hhccccccccccccccccCCchhhcc---cchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcccc
Confidence 899999999999999888654 333 556666766 56777774 66664 68899999999999999888888
Q ss_pred ccceeccccccccCcCCCC----CCCCCEEeccCCCCCcccCCCC-CCccEEecccc-cccccccccccCCCCCcEEEcc
Q 005709 407 QLRYLYLRNCNMLQSLPEL----PLLLSHLDASNCKRLQSLPEIS-SCLEELDISIL-EKLSKTTFPIKHGCSLMQFEFQ 480 (681)
Q Consensus 407 ~L~~L~L~~c~~l~~lp~~----l~~L~~L~l~~c~~l~~lp~~~-~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~ 480 (681)
+|+.|++++|+.++.+|.. +++|+.|++++| .+..+|... .+|+.|.+.++ .++.+|+ +.++++|+.+++.
T Consensus 178 ~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~lP~--l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKLPT--LEKLVALMEASLT 254 (350)
T ss_dssp EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCCCC--TTTCCSCCEEECS
T ss_pred chhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCCCcCcCCC--chhCcChhhCcCC
Confidence 9999999988999999974 788999999985 788888764 48999987655 4667764 7889999999886
Q ss_pred C
Q 005709 481 N 481 (681)
Q Consensus 481 ~ 481 (681)
+
T Consensus 255 ~ 255 (350)
T 4ay9_X 255 Y 255 (350)
T ss_dssp C
T ss_pred C
Confidence 5
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.64 E-value=1.9e-15 Score=154.22 Aligned_cols=195 Identities=23% Similarity=0.268 Sum_probs=152.9
Q ss_pred CcEEEEEeecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCC-C
Q 005709 256 DAIEGIFFDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFS-F 334 (681)
Q Consensus 256 ~~v~~l~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~ 334 (681)
..++.+.+..+.... ...+..+++|++|++++|.+.. + +.+..+ ++|++|++++|.++.+|+. +
T Consensus 41 ~~L~~L~l~~~~i~~----~~~l~~l~~L~~L~l~~n~l~~---------~-~~l~~l-~~L~~L~L~~n~l~~~~~~~~ 105 (272)
T 3rfs_A 41 NSIDQIIANNSDIKS----VQGIQYLPNVRYLALGGNKLHD---------I-SALKEL-TNLTYLILTGNQLQSLPNGVF 105 (272)
T ss_dssp TTCCEEECTTSCCCC----CTTGGGCTTCCEEECTTSCCCC---------C-GGGTTC-TTCCEEECTTSCCCCCCTTTT
T ss_pred cceeeeeeCCCCccc----ccccccCCCCcEEECCCCCCCC---------c-hhhcCC-CCCCEEECCCCccCccChhHh
Confidence 345555555444322 2358899999999999988522 2 355566 7899999999999998876 4
Q ss_pred -CCCCceEEEcCCCCccccccc-ccccccccccceecc--cCCcccCC--CCCCCCCcEEEcccCCCcccCcc-ccCCCc
Q 005709 335 -EPNYLIELNLPYSKVEQIWIG-EKKAFKLKFINLYNS--RYLTRLPE--FSEIPNLERINLSGSELERLPAT-IKQFSQ 407 (681)
Q Consensus 335 -~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~~L~l--~~l~~lp~--~~~l~~L~~L~L~~n~l~~lp~~-i~~L~~ 407 (681)
.+++|++|++++|.++.++.. +.. +++|++|++ +.++.+|. ++.+++|++|++++|.++.+|+. ++.+++
T Consensus 106 ~~l~~L~~L~L~~n~l~~~~~~~~~~---l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 182 (272)
T 3rfs_A 106 DKLTNLKELVLVENQLQSLPDGVFDK---LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQ 182 (272)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTT---CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCcCCCEEECCCCcCCccCHHHhcc---CCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCcc
Confidence 899999999999999988765 566 999999999 78888885 78999999999999999988776 689999
Q ss_pred cceeccccccccCcCCCC----CCCCCEEeccCCCCCcccCCCCCCccEEecccccccccccccccCCCC
Q 005709 408 LRYLYLRNCNMLQSLPEL----PLLLSHLDASNCKRLQSLPEISSCLEELDISILEKLSKTTFPIKHGCS 473 (681)
Q Consensus 408 L~~L~L~~c~~l~~lp~~----l~~L~~L~l~~c~~l~~lp~~~~~L~~L~l~~n~l~~~~~~~l~~l~~ 473 (681)
|++|++++|. +..+|.. +++|+.|++++|......| +|+.|++..|.+.+..+..++.+..
T Consensus 183 L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~----~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 183 LKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWDCTCP----GIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCCCTT----TTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CCEEECCCCc-CCccCHHHHhCCcCCCEEEccCCCccccCc----HHHHHHHHHHhCCCcccCcccccCC
Confidence 9999999954 6666653 7899999999986554433 6888888888887655544665543
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.62 E-value=7.2e-16 Score=160.55 Aligned_cols=190 Identities=16% Similarity=0.077 Sum_probs=146.8
Q ss_pred cEEEEEeecCCCcccccCHHHh--cCCCCCceEEEeCCCCCCCcccccccccC----ccccccccCccEEEecCCCCCCC
Q 005709 257 AIEGIFFDLSKINYLHLSPQAF--ANMSSLTLLKFYMPECNGVPIMSSKLHLN----QDLEYLPKKLRYLHWHEYPLKTL 330 (681)
Q Consensus 257 ~v~~l~l~~~~~~~~~~~~~~f--~~l~~L~~L~l~~n~~~~~~~~~~~~~l~----~~l~~l~~~L~~L~l~~~~l~~l 330 (681)
.++.+.+..+. .....+..+ .++++|+.|++++|.+ ....+ ..+..+ ++|++|++++|.+..+
T Consensus 92 ~L~~L~l~~n~--l~~~~~~~~~~~~~~~L~~L~Ls~n~i--------~~~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~ 160 (310)
T 4glp_A 92 RLKELTLEDLK--ITGTMPPLPLEATGLALSSLRLRNVSW--------ATGRSWLAELQQWLK-PGLKVLSIAQAHSPAF 160 (310)
T ss_dssp CCCEEEEESCC--CBSCCCCCSSSCCCBCCSSCEEESCCC--------SSTTSSHHHHHTTBC-SCCCEEEEECCSSCCC
T ss_pred ceeEEEeeCCE--eccchhhhhhhccCCCCCEEEeecccc--------cchhhhhHHHHhhhc-cCCCEEEeeCCCcchh
Confidence 36666555443 333455566 8899999999999986 22222 223334 7899999999999988
Q ss_pred CCC-C-CCCCceEEEcCCCCccc---cccc--ccccccccccceecc--cCCcccCC-----CCCCCCCcEEEcccCCCc
Q 005709 331 PFS-F-EPNYLIELNLPYSKVEQ---IWIG--EKKAFKLKFINLYNS--RYLTRLPE-----FSEIPNLERINLSGSELE 396 (681)
Q Consensus 331 p~~-~-~l~~L~~L~L~~n~l~~---lp~~--~~~l~~L~~L~~L~l--~~l~~lp~-----~~~l~~L~~L~L~~n~l~ 396 (681)
|+. + .+++|++|+|++|++.. ++.. +.. +++|++|++ +.++.+|. ++.+++|++|+|++|.++
T Consensus 161 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~---l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~ 237 (310)
T 4glp_A 161 SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHK---FPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLR 237 (310)
T ss_dssp CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTS---SCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCC
T ss_pred hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhc---CCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCC
Confidence 754 5 89999999999999754 4332 355 999999999 77876664 468899999999999999
Q ss_pred cc-CccccCC---CccceeccccccccCcCCCC-CCCCCEEeccCCCCCcccC--CCCCCccEEecccccccc
Q 005709 397 RL-PATIKQF---SQLRYLYLRNCNMLQSLPEL-PLLLSHLDASNCKRLQSLP--EISSCLEELDISILEKLS 462 (681)
Q Consensus 397 ~l-p~~i~~L---~~L~~L~L~~c~~l~~lp~~-l~~L~~L~l~~c~~l~~lp--~~~~~L~~L~l~~n~l~~ 462 (681)
.+ |+.++.+ ++|++|++++ +.++.+|.. .++|+.|++++| .+..+| ..+.+|+.|++++|.++.
T Consensus 238 ~~~p~~~~~~~~~~~L~~L~Ls~-N~l~~lp~~~~~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 238 ATVNPSAPRCMWSSALNSLNLSF-AGLEQVPKGLPAKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCCSCCSSCCCCTTCCCEECCS-SCCCSCCSCCCSCCSCEECCSC-CCCSCCCTTSCCCCSCEECSSTTTSC
T ss_pred ccchhhHHhccCcCcCCEEECCC-CCCCchhhhhcCCCCEEECCCC-cCCCCchhhhCCCccEEECcCCCCCC
Confidence 76 8888777 6999999999 557788876 679999999996 455554 444599999999999864
No 86
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.61 E-value=7.4e-16 Score=160.64 Aligned_cols=191 Identities=17% Similarity=0.107 Sum_probs=148.8
Q ss_pred CCcEEEEEeecCCCcccccCHHHh--cCCCCCceEEEeCCCCCCCcccccccccCcccccc----ccCccEEEecCCCCC
Q 005709 255 TDAIEGIFFDLSKINYLHLSPQAF--ANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYL----PKKLRYLHWHEYPLK 328 (681)
Q Consensus 255 ~~~v~~l~l~~~~~~~~~~~~~~f--~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l----~~~L~~L~l~~~~l~ 328 (681)
...++.+.+..+... ...+..+ ..+++|+.|++++|.+ .. +|..+..+ +++|++|++++|.++
T Consensus 94 l~~L~~L~L~~n~l~--~~~~~~~~~~~l~~L~~L~Ls~N~l--------~~-~~~~~~~l~~~~~~~L~~L~L~~N~l~ 162 (312)
T 1wwl_A 94 ISGLQELTLENLEVT--GTAPPPLLEATGPDLNILNLRNVSW--------AT-RDAWLAELQQWLKPGLKVLSIAQAHSL 162 (312)
T ss_dssp TSCCCEEEEEEEBCB--SCCCCCSSSCCSCCCSEEEEESCBC--------SS-SSSHHHHHHTTCCTTCCEEEEESCSCC
T ss_pred cCCccEEEccCCccc--chhHHHHHHhcCCCccEEEccCCCC--------cc-hhHHHHHHHHhhcCCCcEEEeeCCCCc
Confidence 345666665554433 2334443 8999999999999986 22 25555555 378999999999999
Q ss_pred CCC-CCC-CCCCceEEEcCCCCccc---ccccc--cccccccccceecc--cCCcccCC-----CCCCCCCcEEEcccCC
Q 005709 329 TLP-FSF-EPNYLIELNLPYSKVEQ---IWIGE--KKAFKLKFINLYNS--RYLTRLPE-----FSEIPNLERINLSGSE 394 (681)
Q Consensus 329 ~lp-~~~-~l~~L~~L~L~~n~l~~---lp~~~--~~l~~L~~L~~L~l--~~l~~lp~-----~~~l~~L~~L~L~~n~ 394 (681)
.+| ..+ .+++|++|+|++|++.. +|..+ .. +++|++|++ +.++.+|. +.++++|++|++++|.
T Consensus 163 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~ 239 (312)
T 1wwl_A 163 NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK---FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS 239 (312)
T ss_dssp CCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS---CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC
T ss_pred cchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc---CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc
Confidence 988 456 89999999999999753 34444 56 999999999 77775442 4688999999999999
Q ss_pred CcccC--ccccCCCccceeccccccccCcCCCCC-CCCCEEeccCCCCCcccCCCCC---CccEEecccccccc
Q 005709 395 LERLP--ATIKQFSQLRYLYLRNCNMLQSLPELP-LLLSHLDASNCKRLQSLPEISS---CLEELDISILEKLS 462 (681)
Q Consensus 395 l~~lp--~~i~~L~~L~~L~L~~c~~l~~lp~~l-~~L~~L~l~~c~~l~~lp~~~~---~L~~L~l~~n~l~~ 462 (681)
++..+ ..+..+++|++|++++| .++.+|..+ ++|++|++++| .+..+|. +. +|+.|++++|.+++
T Consensus 240 l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 240 LRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKGLPAKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSSCCSEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred CCcccchhhhhhcCCCCEEECCCC-ccChhhhhccCCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCCCCC
Confidence 99765 45778999999999995 577999874 58999999995 6777776 33 89999999999875
No 87
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.61 E-value=8.1e-15 Score=164.34 Aligned_cols=170 Identities=24% Similarity=0.307 Sum_probs=142.9
Q ss_pred cCccEEEecCCCCCCCCCCCCCCCceEEEcCCCCcccccccccccccccccceecc--cCCcccCCCCCCCCCcEEEccc
Q 005709 315 KKLRYLHWHEYPLKTLPFSFEPNYLIELNLPYSKVEQIWIGEKKAFKLKFINLYNS--RYLTRLPEFSEIPNLERINLSG 392 (681)
Q Consensus 315 ~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~~L~l--~~l~~lp~~~~l~~L~~L~L~~ 392 (681)
.+|+.|++++|.++.+|..+ +++|++|+|++|.|+.+| .. +++|+.|++ |.++.+|.+++ +|++|+|++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip---~~---l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP---EL---PASLEYLDACDNRLSTLPELPA--SLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC---CC---CTTCCEEECCSSCCSCCCCCCT--TCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc---cc---cCCCCEEEccCCCCCCcchhhc--CCCEEECCC
Confidence 48999999999999999876 478999999999999998 34 899999999 88888998554 999999999
Q ss_pred CCCcccCccccCCCccceeccccccccCcCCCCCCCCCEEeccCCCCCcccCCCCC-CccEEecccccccccccccccCC
Q 005709 393 SELERLPATIKQFSQLRYLYLRNCNMLQSLPELPLLLSHLDASNCKRLQSLPEISS-CLEELDISILEKLSKTTFPIKHG 471 (681)
Q Consensus 393 n~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~L~~L~l~~c~~l~~lp~~~~-~L~~L~l~~n~l~~~~~~~l~~l 471 (681)
|.++.+|. .+++|+.|++++ +.++.+|..+++|+.|++++| .+..+|. ++ +|+.|++++|.++.+|. +..
T Consensus 130 N~l~~lp~---~l~~L~~L~Ls~-N~l~~lp~~l~~L~~L~Ls~N-~L~~lp~-l~~~L~~L~Ls~N~L~~lp~--~~~- 200 (571)
T 3cvr_A 130 NQLTMLPE---LPALLEYINADN-NQLTMLPELPTSLEVLSVRNN-QLTFLPE-LPESLEALDVSTNLLESLPA--VPV- 200 (571)
T ss_dssp SCCSCCCC---CCTTCCEEECCS-SCCSCCCCCCTTCCEEECCSS-CCSCCCC-CCTTCCEEECCSSCCSSCCC--CC--
T ss_pred CcCCCCCC---cCccccEEeCCC-CccCcCCCcCCCcCEEECCCC-CCCCcch-hhCCCCEEECcCCCCCchhh--HHH-
Confidence 99999998 789999999999 557889998899999999996 5777988 55 99999999999998887 443
Q ss_pred CCC-------cEEEccCCc---------------cccccccccChHHHHHhhHH
Q 005709 472 CSL-------MQFEFQNCW---------------ELKENKILEDSELRIQHMAI 503 (681)
Q Consensus 472 ~~L-------~~L~l~~c~---------------~L~l~~~~l~~~~i~~l~~L 503 (681)
+| +.|++++|. .|++++|.+.+.....+.+|
T Consensus 201 -~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 201 -RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp --------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred -hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 66 999999986 56777777776444444444
No 88
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.59 E-value=5.1e-15 Score=152.67 Aligned_cols=166 Identities=16% Similarity=0.168 Sum_probs=93.6
Q ss_pred cCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCC-CCCCceEEEcCCCCccccccccc
Q 005709 279 ANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSF-EPNYLIELNLPYSKVEQIWIGEK 357 (681)
Q Consensus 279 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~lp~~~~ 357 (681)
..+++|+.|++++|.. ..++ ++..+ ++|++|++++|.++.+|+ + .+++|++|++++|.++.+|. +.
T Consensus 43 ~~l~~L~~L~l~~~~i---------~~~~-~~~~l-~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~ 109 (291)
T 1h6t_A 43 NELNSIDQIIANNSDI---------KSVQ-GIQYL-PNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LK 109 (291)
T ss_dssp HHHHTCCEEECTTSCC---------CCCT-TGGGC-TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GT
T ss_pred hhcCcccEEEccCCCc---------ccCh-hHhcC-CCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hc
Confidence 4566677777776653 2222 24444 567777777777666665 4 66667777777766665543 33
Q ss_pred ccccccccceecc--cCCcccCCCCCCCCCcEEEcccCCCcccCccccCCCccceeccccccccCcCCCCCCCCCEEecc
Q 005709 358 KAFKLKFINLYNS--RYLTRLPEFSEIPNLERINLSGSELERLPATIKQFSQLRYLYLRNCNMLQSLPELPLLLSHLDAS 435 (681)
Q Consensus 358 ~l~~L~~L~~L~l--~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~L~~L~l~ 435 (681)
. +++|++|++ +.++.++.++.+++|++|++++|.++.+ +.++.+++|+.|++++| .+..++..
T Consensus 110 ~---l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~l---------- 174 (291)
T 1h6t_A 110 D---LKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVPL---------- 174 (291)
T ss_dssp T---CTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS-CCCCCGGG----------
T ss_pred c---CCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCC-ccccchhh----------
Confidence 3 555555555 4555555455555555555555555555 34555555555555553 22222211
Q ss_pred CCCCCcccCCCCCCccEEecccccccccccccccCCCCCcEEEccCCc
Q 005709 436 NCKRLQSLPEISSCLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 436 ~c~~l~~lp~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~ 483 (681)
..+.+|+.|++++|.++.++. +..+++|+.|++++|+
T Consensus 175 ---------~~l~~L~~L~L~~N~i~~l~~--l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 175 ---------AGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQE 211 (291)
T ss_dssp ---------TTCTTCCEEECCSSCCCBCGG--GTTCTTCSEEEEEEEE
T ss_pred ---------cCCCccCEEECCCCcCCCChh--hccCCCCCEEECcCCc
Confidence 011266666666666666543 6667777777776664
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.59 E-value=3.7e-15 Score=153.69 Aligned_cols=169 Identities=21% Similarity=0.275 Sum_probs=129.7
Q ss_pred cEEEEEeecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCCCC
Q 005709 257 AIEGIFFDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSFEP 336 (681)
Q Consensus 257 ~v~~l~l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l 336 (681)
.++.+.+..+.. ..+ +.+..+++|+.|++++|.+. .++. +..+ ++|++|++++|.++.+|....+
T Consensus 47 ~L~~L~l~~~~i--~~~--~~~~~l~~L~~L~L~~n~l~---------~~~~-l~~l-~~L~~L~l~~n~l~~~~~l~~l 111 (291)
T 1h6t_A 47 SIDQIIANNSDI--KSV--QGIQYLPNVTKLFLNGNKLT---------DIKP-LANL-KNLGWLFLDENKVKDLSSLKDL 111 (291)
T ss_dssp TCCEEECTTSCC--CCC--TTGGGCTTCCEEECCSSCCC---------CCGG-GTTC-TTCCEEECCSSCCCCGGGGTTC
T ss_pred cccEEEccCCCc--ccC--hhHhcCCCCCEEEccCCccC---------CCcc-cccC-CCCCEEECCCCcCCCChhhccC
Confidence 455555544433 333 35889999999999999862 2333 5666 7899999999999998874499
Q ss_pred CCceEEEcCCCCcccccccccccccccccceecc--cCCcccCCCCCCCCCcEEEcccCCCcccCccccCCCccceeccc
Q 005709 337 NYLIELNLPYSKVEQIWIGEKKAFKLKFINLYNS--RYLTRLPEFSEIPNLERINLSGSELERLPATIKQFSQLRYLYLR 414 (681)
Q Consensus 337 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~~L~l--~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~~i~~L~~L~~L~L~ 414 (681)
++|++|++++|.++.++ .+.. +++|+.|++ +.++.++.++.+++|++|++++|.++.+++ +..+++|+.|+++
T Consensus 112 ~~L~~L~L~~n~i~~~~-~l~~---l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~ 186 (291)
T 1h6t_A 112 KKLKSLSLEHNGISDIN-GLVH---LPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLS 186 (291)
T ss_dssp TTCCEEECTTSCCCCCG-GGGG---CTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCCCCh-hhcC---CCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchh-hcCCCccCEEECC
Confidence 99999999999999874 4666 999999999 888888779999999999999999999887 9999999999999
Q ss_pred cccccCcCCCCCCCCCEEeccCCCCCcccCCCCCCccEEeccccccccccc
Q 005709 415 NCNMLQSLPELPLLLSHLDASNCKRLQSLPEISSCLEELDISILEKLSKTT 465 (681)
Q Consensus 415 ~c~~l~~lp~~l~~L~~L~l~~c~~l~~lp~~~~~L~~L~l~~n~l~~~~~ 465 (681)
+| .++.+|.. ..+.+|+.|++++|.+...|.
T Consensus 187 ~N-~i~~l~~l-------------------~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 187 KN-HISDLRAL-------------------AGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp SS-CCCBCGGG-------------------TTCTTCSEEEEEEEEEECCCE
T ss_pred CC-cCCCChhh-------------------ccCCCCCEEECcCCcccCCcc
Confidence 85 44444321 012256666666666665543
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.57 E-value=3.4e-14 Score=143.14 Aligned_cols=164 Identities=23% Similarity=0.284 Sum_probs=123.4
Q ss_pred CCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCC-C-CCCCceEEEcCCCCccccccc-cccc
Q 005709 283 SLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFS-F-EPNYLIELNLPYSKVEQIWIG-EKKA 359 (681)
Q Consensus 283 ~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~l~~lp~~-~~~l 359 (681)
+.+.++++++.+ ..+|.++ +++|+.|++++|.++.+++. + .+++|++|+|++|.++.++.. +..
T Consensus 15 ~~~~l~~~~~~l---------~~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~- 81 (251)
T 3m19_A 15 GKKEVDCQGKSL---------DSVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD- 81 (251)
T ss_dssp GGTEEECTTCCC---------SSCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT-
T ss_pred CCeEEecCCCCc---------cccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhcc-
Confidence 456677766553 3445433 46788888888888887764 5 788888888888888876543 566
Q ss_pred ccccccceecc--cCCcccCC--CCCCCCCcEEEcccCCCcccCcc-ccCCCccceeccccccccCcCCCC----CCCCC
Q 005709 360 FKLKFINLYNS--RYLTRLPE--FSEIPNLERINLSGSELERLPAT-IKQFSQLRYLYLRNCNMLQSLPEL----PLLLS 430 (681)
Q Consensus 360 ~~L~~L~~L~l--~~l~~lp~--~~~l~~L~~L~L~~n~l~~lp~~-i~~L~~L~~L~L~~c~~l~~lp~~----l~~L~ 430 (681)
+++|++|++ +.++.+|. |+.+++|++|+|++|.++.+|+. +..+++|+.|+|++| .+..+|.. +++|+
T Consensus 82 --l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 158 (251)
T 3m19_A 82 --LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQ 158 (251)
T ss_dssp --CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred --CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCC
Confidence 888888888 77777773 78888999999998888888776 688889999999884 57777763 67889
Q ss_pred EEeccCCCCCcccCC-CCC---CccEEeccccccccc
Q 005709 431 HLDASNCKRLQSLPE-ISS---CLEELDISILEKLSK 463 (681)
Q Consensus 431 ~L~l~~c~~l~~lp~-~~~---~L~~L~l~~n~l~~~ 463 (681)
+|++++| .+..+|. .+. +|+.|++++|.+...
T Consensus 159 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 159 TLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp EEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred EEECCCC-cCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 9999885 5556654 332 899999999987654
No 91
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.56 E-value=6e-15 Score=167.07 Aligned_cols=169 Identities=17% Similarity=0.236 Sum_probs=94.0
Q ss_pred cCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCCCCCCceEEEcCCCCcccccccccc
Q 005709 279 ANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSFEPNYLIELNLPYSKVEQIWIGEKK 358 (681)
Q Consensus 279 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~~~~~ 358 (681)
..+++|+.|++++|.+ ..++ .+..+ ++|+.|+|++|.++.+|+...+++|+.|+|++|.++.+| .+..
T Consensus 40 ~~L~~L~~L~l~~n~i---------~~l~-~l~~l-~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~-~l~~ 107 (605)
T 1m9s_A 40 NELNSIDQIIANNSDI---------KSVQ-GIQYL-PNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS-SLKD 107 (605)
T ss_dssp HHHTTCCCCBCTTCCC---------CCCT-TGGGC-TTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT-TSTT
T ss_pred hcCCCCCEEECcCCCC---------CCCh-HHccC-CCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh-hhcc
Confidence 4456666666665543 2222 34444 566666666666666665226666666666666666554 3444
Q ss_pred cccccccceecc--cCCcccCCCCCCCCCcEEEcccCCCcccCccccCCCccceeccccccccCcCCCC--CCCCCEEec
Q 005709 359 AFKLKFINLYNS--RYLTRLPEFSEIPNLERINLSGSELERLPATIKQFSQLRYLYLRNCNMLQSLPEL--PLLLSHLDA 434 (681)
Q Consensus 359 l~~L~~L~~L~l--~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~--l~~L~~L~l 434 (681)
+++|+.|+| +.+..+|.+..+++|+.|+|++|.++.+ +.++.+++|+.|+|++|. +..+++. +++|+.|+|
T Consensus 108 ---l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~L 182 (605)
T 1m9s_A 108 ---LKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVPLAGLTKLQNLYL 182 (605)
T ss_dssp ---CTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGGGTTCTTCCEEEC
T ss_pred ---CCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchhhccCCCCCEEEC
Confidence 666666666 5555555566666666666666666655 346666666666666643 3333222 555666666
Q ss_pred cCCCCCcccCCCC--CCccEEeccccccccccc
Q 005709 435 SNCKRLQSLPEIS--SCLEELDISILEKLSKTT 465 (681)
Q Consensus 435 ~~c~~l~~lp~~~--~~L~~L~l~~n~l~~~~~ 465 (681)
++| .+..+|... .+|+.|+|++|.+...|.
T Consensus 183 s~N-~i~~l~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 183 SKN-HISDLRALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp CSS-CCCBCGGGTTCTTCSEEECCSEEEECCCC
T ss_pred cCC-CCCCChHHccCCCCCEEEccCCcCcCCcc
Confidence 554 334444321 156666666666655443
No 92
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.55 E-value=2.1e-14 Score=162.59 Aligned_cols=166 Identities=16% Similarity=0.129 Sum_probs=141.9
Q ss_pred cccccCccEEEecCCCCCCCCCCCCCCCceEEEcCCCCcccccccccccccccccceecc--cCCcccCCCCCCCCCcEE
Q 005709 311 EYLPKKLRYLHWHEYPLKTLPFSFEPNYLIELNLPYSKVEQIWIGEKKAFKLKFINLYNS--RYLTRLPEFSEIPNLERI 388 (681)
Q Consensus 311 ~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~~L~l--~~l~~lp~~~~l~~L~~L 388 (681)
..+ ++|+.|++++|.+..+|..-.+++|+.|+|++|.++.++. +.. +++|+.|+| +.+..+|.++.+++|+.|
T Consensus 40 ~~L-~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~---l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L 114 (605)
T 1m9s_A 40 NEL-NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTN---LKNLGWLFLDENKIKDLSSLKDLKKLKSL 114 (605)
T ss_dssp HHH-TTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGG---CTTCCEEECCSSCCCCCTTSTTCTTCCEE
T ss_pred hcC-CCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hcc---CCCCCEEECcCCCCCCChhhccCCCCCEE
Confidence 344 7899999999999999853399999999999999998876 666 999999999 888899999999999999
Q ss_pred EcccCCCcccCccccCCCccceeccccccccCcCCCC--CCCCCEEeccCCCCCcccCCC--CCCccEEecccccccccc
Q 005709 389 NLSGSELERLPATIKQFSQLRYLYLRNCNMLQSLPEL--PLLLSHLDASNCKRLQSLPEI--SSCLEELDISILEKLSKT 464 (681)
Q Consensus 389 ~L~~n~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~--l~~L~~L~l~~c~~l~~lp~~--~~~L~~L~l~~n~l~~~~ 464 (681)
+|++|.+..+| .+..+++|+.|+|++| .+..++.. +++|+.|+|++|. +..++.. +.+|+.|+|++|.+..++
T Consensus 115 ~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~i~~l~ 191 (605)
T 1m9s_A 115 SLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQ-ISDIVPLAGLTKLQNLYLSKNHISDLR 191 (605)
T ss_dssp ECTTSCCCCCG-GGGGCTTCSEEECCSS-CCCCCGGGGSCTTCSEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCBCG
T ss_pred EecCCCCCCCc-cccCCCccCEEECCCC-ccCCchhhcccCCCCEEECcCCc-CCCchhhccCCCCCEEECcCCCCCCCh
Confidence 99999999875 5999999999999995 56666543 8999999999974 5555442 229999999999999985
Q ss_pred cccccCCCCCcEEEccCCcccc
Q 005709 465 TFPIKHGCSLMQFEFQNCWELK 486 (681)
Q Consensus 465 ~~~l~~l~~L~~L~l~~c~~L~ 486 (681)
. +..+++|+.|+|++|....
T Consensus 192 -~-l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 192 -A-LAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp -G-GTTCTTCSEEECCSEEEEC
T ss_pred -H-HccCCCCCEEEccCCcCcC
Confidence 3 8999999999999987443
No 93
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.54 E-value=3.8e-14 Score=138.36 Aligned_cols=151 Identities=23% Similarity=0.264 Sum_probs=94.2
Q ss_pred cCccEEEecCCCCCCCCCC-C-CCCCceEEEcCCCCccccccc-ccccccccccceecc--cCCcccCC--CCCCCCCcE
Q 005709 315 KKLRYLHWHEYPLKTLPFS-F-EPNYLIELNLPYSKVEQIWIG-EKKAFKLKFINLYNS--RYLTRLPE--FSEIPNLER 387 (681)
Q Consensus 315 ~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~~L~l--~~l~~lp~--~~~l~~L~~ 387 (681)
++|++|++++|.++.+|.. + .+++|++|++++|+++.+|.. +.. +++|++|++ +.++.+|. ++.+++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 104 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNK---LTSLTYLNLSTNQLQSLPNGVFDKLTQLKE 104 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT---CTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCC---CCCcCEEECCCCcCCccCHhHhcCccCCCE
Confidence 5666677777666666654 3 566677777777766666543 344 666667666 55666664 567777777
Q ss_pred EEcccCCCcccCcc-ccCCCccceeccccccccCcCCCC----CCCCCEEeccCCCCCcccCCCCCCccEEecccccccc
Q 005709 388 INLSGSELERLPAT-IKQFSQLRYLYLRNCNMLQSLPEL----PLLLSHLDASNCKRLQSLPEISSCLEELDISILEKLS 462 (681)
Q Consensus 388 L~L~~n~l~~lp~~-i~~L~~L~~L~L~~c~~l~~lp~~----l~~L~~L~l~~c~~l~~lp~~~~~L~~L~l~~n~l~~ 462 (681)
|++++|.++.+|+. +.++++|++|++++| .+..+|.. +++|+.|++++|...... .+|+.|+++.|.+.+
T Consensus 105 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~----~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 105 LALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWDCTC----PGIRYLSEWINKHSG 179 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBCCCT----TTTHHHHHHHHHCTT
T ss_pred EEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCeecCC----CCHHHHHHHHHhCCc
Confidence 77777777766654 566777777777763 45555543 566777777776433322 256777777777764
Q ss_pred cccccccCCCC
Q 005709 463 KTTFPIKHGCS 473 (681)
Q Consensus 463 ~~~~~l~~l~~ 473 (681)
..+..++.++.
T Consensus 180 ~ip~~~~~l~~ 190 (208)
T 2o6s_A 180 VVRNSAGSVAP 190 (208)
T ss_dssp TBBCTTSSBCT
T ss_pred eeeccCccccC
Confidence 43333555543
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.54 E-value=5.8e-16 Score=166.42 Aligned_cols=216 Identities=16% Similarity=0.104 Sum_probs=157.6
Q ss_pred cEEEEEeecCCCcccccCH----HHhcCCCCCceEEEeCCCCCCCcccccccccCccc-------cccccCccEEEecCC
Q 005709 257 AIEGIFFDLSKINYLHLSP----QAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDL-------EYLPKKLRYLHWHEY 325 (681)
Q Consensus 257 ~v~~l~l~~~~~~~~~~~~----~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l-------~~l~~~L~~L~l~~~ 325 (681)
.++.+ +++.+......+ ..|.++++|+.|++++|....+ .+.+|.++ ..+ ++|++|++++|
T Consensus 33 ~L~~L--~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l-----~~~~~~~~~~l~~~l~~~-~~L~~L~Ls~n 104 (386)
T 2ca6_A 33 SVKEI--VLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRV-----KDEIPEALRLLLQALLKC-PKLHTVRLSDN 104 (386)
T ss_dssp CCCEE--ECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSC-----GGGSHHHHHHHHHHHTTC-TTCCEEECCSC
T ss_pred CccEE--ECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCcc-----ccchhHHHHHHHHHHhhC-CcccEEECCCC
Confidence 45544 444444333323 3467899999999998754332 33445444 455 78999999999
Q ss_pred CCCC-----CCCCC-CCCCceEEEcCCCCccc-----ccccccccccc---------cccceecc--cCCc--ccC---C
Q 005709 326 PLKT-----LPFSF-EPNYLIELNLPYSKVEQ-----IWIGEKKAFKL---------KFINLYNS--RYLT--RLP---E 378 (681)
Q Consensus 326 ~l~~-----lp~~~-~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L---------~~L~~L~l--~~l~--~lp---~ 378 (681)
.++. +|..+ .+++|++|+|++|.++. ++..+.. + ++|++|++ +.++ .+| .
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~---l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQE---LAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHH---HHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHH---HhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 9887 66667 88999999999999863 3333333 5 89999999 6664 444 2
Q ss_pred -CCCCCCCcEEEcccCCCc------ccCccccCCCccceecccccccc----CcCCCC---CCCCCEEeccCCCCCcc--
Q 005709 379 -FSEIPNLERINLSGSELE------RLPATIKQFSQLRYLYLRNCNML----QSLPEL---PLLLSHLDASNCKRLQS-- 442 (681)
Q Consensus 379 -~~~l~~L~~L~L~~n~l~------~lp~~i~~L~~L~~L~L~~c~~l----~~lp~~---l~~L~~L~l~~c~~l~~-- 442 (681)
+..+++|++|++++|.++ -+|..+.++++|+.|+|++|..- ..+|.. +++|++|++++|.....
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence 667889999999999988 34548899999999999996631 445543 78899999999754332
Q ss_pred --cCCC-----CCCccEEecccccccc-----cccccc-cCCCCCcEEEccCCcc
Q 005709 443 --LPEI-----SSCLEELDISILEKLS-----KTTFPI-KHGCSLMQFEFQNCWE 484 (681)
Q Consensus 443 --lp~~-----~~~L~~L~l~~n~l~~-----~~~~~l-~~l~~L~~L~l~~c~~ 484 (681)
+|.. ..+|+.|++++|.+.. +|.. + .++++|++|++++|..
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~-l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV-IDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHH-HHHHCTTCCEEECTTSBS
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHH-HHhcCCCceEEEccCCcC
Confidence 4543 3489999999999988 7776 5 6789999999988763
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.54 E-value=3.8e-14 Score=150.14 Aligned_cols=185 Identities=15% Similarity=0.138 Sum_probs=131.7
Q ss_pred CCCceEEEeCCCCCCCcccccccccCcc-ccccccCccEEEecCCCCC-CCCCC-C-CCCCceE-EEcCCCCccccc-cc
Q 005709 282 SSLTLLKFYMPECNGVPIMSSKLHLNQD-LEYLPKKLRYLHWHEYPLK-TLPFS-F-EPNYLIE-LNLPYSKVEQIW-IG 355 (681)
Q Consensus 282 ~~L~~L~l~~n~~~~~~~~~~~~~l~~~-l~~l~~~L~~L~l~~~~l~-~lp~~-~-~l~~L~~-L~L~~n~l~~lp-~~ 355 (681)
++++.|+|++|.+ ..+|.+ +..+ ++|++|++++|.+. .+|.. | ++++|.+ +.+.+|+++.++ ..
T Consensus 30 ~~l~~L~Ls~N~i---------~~i~~~~f~~l-~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~ 99 (350)
T 4ay9_X 30 RNAIELRFVLTKL---------RVIQKGAFSGF-GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA 99 (350)
T ss_dssp TTCSEEEEESCCC---------SEECTTSSTTC-TTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTS
T ss_pred CCCCEEEccCCcC---------CCcCHHHHcCC-CCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchh
Confidence 5788888888874 456553 5556 67888888888864 46654 4 6777654 666678888774 44
Q ss_pred ccccccccccceecc--cCCcccCC--CCCCCCCcEEEcc-cCCCcccCcc-ccCCC-ccceeccccccccCcCCCC---
Q 005709 356 EKKAFKLKFINLYNS--RYLTRLPE--FSEIPNLERINLS-GSELERLPAT-IKQFS-QLRYLYLRNCNMLQSLPEL--- 425 (681)
Q Consensus 356 ~~~l~~L~~L~~L~l--~~l~~lp~--~~~l~~L~~L~L~-~n~l~~lp~~-i~~L~-~L~~L~L~~c~~l~~lp~~--- 425 (681)
+.. +++|++|++ +.+..+|+ +....++..|++. ++.+..+|.. +..+. .|+.|++++ +.++.+|..
T Consensus 100 f~~---l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~~f~ 175 (350)
T 4ay9_X 100 FQN---LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNSAFN 175 (350)
T ss_dssp BCC---CTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTTSST
T ss_pred hhh---ccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChhhcc
Confidence 566 888888888 77777775 4555667778876 6778877764 55553 588888887 567777765
Q ss_pred CCCCCEEeccCCCCCcccCCCC-C---CccEEecccccccccccccccCCCCCcEEEccCCc
Q 005709 426 PLLLSHLDASNCKRLQSLPEIS-S---CLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 426 l~~L~~L~l~~c~~l~~lp~~~-~---~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~ 483 (681)
..+|+.|++++|+.++.+|... . +|+.|++++|.++.+|+..+ .+|+.|.+.+|.
T Consensus 176 ~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~ 234 (350)
T 4ay9_X 176 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTY 234 (350)
T ss_dssp TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCT
T ss_pred ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCC
Confidence 4578888888878888888753 2 88888888888888887644 455555555544
No 96
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.52 E-value=2.5e-15 Score=158.04 Aligned_cols=196 Identities=16% Similarity=0.103 Sum_probs=151.6
Q ss_pred CHHHhcCC--CCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCC--CCCCC-CCCCceEEEcCCCC
Q 005709 274 SPQAFANM--SSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKT--LPFSF-EPNYLIELNLPYSK 348 (681)
Q Consensus 274 ~~~~f~~l--~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~--lp~~~-~l~~L~~L~L~~n~ 348 (681)
.+..+..+ ++++.|++.+|.+ ...+..+..+ ++|++|++++|.++. +|..+ .+++|++|+|++|.
T Consensus 60 ~~~~~~~~~~~~l~~L~l~~n~l---------~~~~~~~~~~-~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~ 129 (336)
T 2ast_B 60 HPDVTGRLLSQGVIAFRCPRSFM---------DQPLAEHFSP-FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 129 (336)
T ss_dssp CHHHHHHHHHTTCSEEECTTCEE---------CSCCCSCCCC-BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB
T ss_pred CHHHHHhhhhccceEEEcCCccc---------cccchhhccC-CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc
Confidence 46777887 8999999998875 2233334555 789999999998874 66666 88999999999999
Q ss_pred cc-cccccccccccccccceecc--c-CCcc--cCC-CCCCCCCcEEEcccC-CCcc--cCccccCCC-ccceecccccc
Q 005709 349 VE-QIWIGEKKAFKLKFINLYNS--R-YLTR--LPE-FSEIPNLERINLSGS-ELER--LPATIKQFS-QLRYLYLRNCN 417 (681)
Q Consensus 349 l~-~lp~~~~~l~~L~~L~~L~l--~-~l~~--lp~-~~~l~~L~~L~L~~n-~l~~--lp~~i~~L~-~L~~L~L~~c~ 417 (681)
++ ..+..+.. +++|++|++ + .++. +|. +.++++|++|++++| .++. ++..+..++ +|++|++++|.
T Consensus 130 l~~~~~~~l~~---~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 130 LSDPIVNTLAK---NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp CCHHHHHHHTT---CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred cCHHHHHHHhc---CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence 87 55677777 999999999 3 4553 565 788999999999987 8884 677799999 99999999985
Q ss_pred -cc--CcCCCC---CCCCCEEeccCCCCCc-ccCCCCC---CccEEeccccc-ccccccccccCCCCCcEEEccCC
Q 005709 418 -ML--QSLPEL---PLLLSHLDASNCKRLQ-SLPEISS---CLEELDISILE-KLSKTTFPIKHGCSLMQFEFQNC 482 (681)
Q Consensus 418 -~l--~~lp~~---l~~L~~L~l~~c~~l~-~lp~~~~---~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~c 482 (681)
.+ ..+|.. +++|+.|++++|..+. ..+..+. +|+.|++++|. +.......+.++++|+.|++++|
T Consensus 207 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 207 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred ccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 33 334433 8899999999987443 4444443 99999999995 32222123788999999999998
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.51 E-value=4.4e-14 Score=137.91 Aligned_cols=162 Identities=20% Similarity=0.243 Sum_probs=132.5
Q ss_pred CCCCceEEEeCCCCCCCcccccccccCc-cccccccCccEEEecCCCCCCCCCC-C-CCCCceEEEcCCCCccccccc-c
Q 005709 281 MSSLTLLKFYMPECNGVPIMSSKLHLNQ-DLEYLPKKLRYLHWHEYPLKTLPFS-F-EPNYLIELNLPYSKVEQIWIG-E 356 (681)
Q Consensus 281 l~~L~~L~l~~n~~~~~~~~~~~~~l~~-~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~l~~lp~~-~ 356 (681)
.++|+.|++++|.+ . .++. .+..+ ++|++|++++|.++.+|.. | .+++|++|+|++|.++.+|.. +
T Consensus 27 ~~~l~~L~l~~n~l--------~-~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 96 (208)
T 2o6s_A 27 PAQTTYLDLETNSL--------K-SLPNGVFDEL-TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVF 96 (208)
T ss_dssp CTTCSEEECCSSCC--------C-CCCTTTTTTC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCCcEEEcCCCcc--------C-cCChhhhccc-ccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHh
Confidence 46899999999886 2 3443 34555 7899999999999999876 4 899999999999999988765 4
Q ss_pred cccccccccceecc--cCCcccCC--CCCCCCCcEEEcccCCCcccCcc-ccCCCccceeccccccccCcCCCCCCCCCE
Q 005709 357 KKAFKLKFINLYNS--RYLTRLPE--FSEIPNLERINLSGSELERLPAT-IKQFSQLRYLYLRNCNMLQSLPELPLLLSH 431 (681)
Q Consensus 357 ~~l~~L~~L~~L~l--~~l~~lp~--~~~l~~L~~L~L~~n~l~~lp~~-i~~L~~L~~L~L~~c~~l~~lp~~l~~L~~ 431 (681)
.. +++|++|++ +.++.+|. ++.+++|++|++++|.++.+|.. +..+++|+.|++++|..... +++|+.
T Consensus 97 ~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~----~~~l~~ 169 (208)
T 2o6s_A 97 DK---LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT----CPGIRY 169 (208)
T ss_dssp TT---CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC----TTTTHH
T ss_pred cC---ccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC----CCCHHH
Confidence 66 999999999 78888885 89999999999999999998876 78999999999999754443 457899
Q ss_pred EeccCCCCCcccCCCCCCccEEecccccc
Q 005709 432 LDASNCKRLQSLPEISSCLEELDISILEK 460 (681)
Q Consensus 432 L~l~~c~~l~~lp~~~~~L~~L~l~~n~l 460 (681)
|+++.|...+.+|..++++.. ++..|..
T Consensus 170 L~~~~n~~~g~ip~~~~~l~~-~~~~C~~ 197 (208)
T 2o6s_A 170 LSEWINKHSGVVRNSAGSVAP-DSAKCSG 197 (208)
T ss_dssp HHHHHHHCTTTBBCTTSSBCT-TCSBBTT
T ss_pred HHHHHHhCCceeeccCccccC-Ccccccc
Confidence 999998888899988875544 3444443
No 98
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.51 E-value=7e-14 Score=159.66 Aligned_cols=103 Identities=17% Similarity=0.257 Sum_probs=51.9
Q ss_pred cccccccCccEEEecCCCCCCCCCC-C-CCCCceEEEcCCCCccccccc-ccccccccccceecc--cCCcccCC--CCC
Q 005709 309 DLEYLPKKLRYLHWHEYPLKTLPFS-F-EPNYLIELNLPYSKVEQIWIG-EKKAFKLKFINLYNS--RYLTRLPE--FSE 381 (681)
Q Consensus 309 ~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~~L~l--~~l~~lp~--~~~ 381 (681)
.+..+ ++|++|+|++|.++.+|+. | ++++|++|+|++|+++.+|.+ +.. +++|++|++ +.++.+|. |++
T Consensus 71 ~f~~l-~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~---L~~L~~L~Ls~N~l~~l~~~~~~~ 146 (635)
T 4g8a_A 71 SFFSF-PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG---LSSLQKLVAVETNLASLENFPIGH 146 (635)
T ss_dssp TTTTC-TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT---CTTCCEEECTTSCCCCSTTCCCTT
T ss_pred HHhCC-CCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC---CCCCCEEECCCCcCCCCChhhhhc
Confidence 34444 4455555555555555443 3 455555555555555555432 333 555555555 44555542 455
Q ss_pred CCCCcEEEcccCCCcc--cCccccCCCccceecccc
Q 005709 382 IPNLERINLSGSELER--LPATIKQFSQLRYLYLRN 415 (681)
Q Consensus 382 l~~L~~L~L~~n~l~~--lp~~i~~L~~L~~L~L~~ 415 (681)
+++|++|+|++|.++. +|..++++++|++|++++
T Consensus 147 L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 182 (635)
T 4g8a_A 147 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 182 (635)
T ss_dssp CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred CcccCeeccccCccccCCCchhhccchhhhhhcccC
Confidence 5555555555555542 334455555555555555
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.50 E-value=3.3e-14 Score=137.62 Aligned_cols=143 Identities=13% Similarity=0.104 Sum_probs=87.9
Q ss_pred cCccEEEecCCCCCCCCCCC-CCCCceEEEcCCCCcccccccccccccccccceecc--cCCcc-cC-CCCCCCCCcEEE
Q 005709 315 KKLRYLHWHEYPLKTLPFSF-EPNYLIELNLPYSKVEQIWIGEKKAFKLKFINLYNS--RYLTR-LP-EFSEIPNLERIN 389 (681)
Q Consensus 315 ~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~~L~l--~~l~~-lp-~~~~l~~L~~L~ 389 (681)
++|++|++++|.++.+| .+ .+++|++|++++|.++.++ .+.. +++|++|++ +.++. .| .++.+++|++|+
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~---l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISG---LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTT---CTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred CCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhc---CCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 67888888888888888 45 7888888888888766553 3444 566666666 44443 22 355666666666
Q ss_pred cccCCCcc-cCccccCCCccceeccccccccCcCCCCCCCCCEEeccCCCCCcccCCCCCCccEEecccccccccccccc
Q 005709 390 LSGSELER-LPATIKQFSQLRYLYLRNCNMLQSLPELPLLLSHLDASNCKRLQSLPEISSCLEELDISILEKLSKTTFPI 468 (681)
Q Consensus 390 L~~n~l~~-lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~~L~~L~l~~c~~l~~lp~~~~~L~~L~l~~n~l~~~~~~~l 468 (681)
+++|.++. .|..++.+++|++|++++|..++.+|.. ..+.+|+.|++++|.+..++ . +
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l-------------------~~l~~L~~L~l~~n~i~~~~-~-l 177 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPL-------------------KTLPELKSLNIQFDGVHDYR-G-I 177 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGG-------------------GGCSSCCEEECTTBCCCCCT-T-G
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhh-------------------cCCCCCCEEECCCCCCcChH-H-h
Confidence 66555553 4444555555555555554334333321 01125666667777766665 2 6
Q ss_pred cCCCCCcEEEccCCc
Q 005709 469 KHGCSLMQFEFQNCW 483 (681)
Q Consensus 469 ~~l~~L~~L~l~~c~ 483 (681)
..+++|+.|++++|+
T Consensus 178 ~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 178 EDFPKLNQLYAFSQT 192 (197)
T ss_dssp GGCSSCCEEEECBC-
T ss_pred ccCCCCCEEEeeCcc
Confidence 777778887777664
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.50 E-value=2.6e-13 Score=133.75 Aligned_cols=142 Identities=14% Similarity=0.172 Sum_probs=92.8
Q ss_pred cEEEecCCCCCCCCCCCCCCCceEEEcCCCCcccccc-cccccccccccceecc--cCCccc-CC-CCCCCCCcEEEccc
Q 005709 318 RYLHWHEYPLKTLPFSFEPNYLIELNLPYSKVEQIWI-GEKKAFKLKFINLYNS--RYLTRL-PE-FSEIPNLERINLSG 392 (681)
Q Consensus 318 ~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~~L~l--~~l~~l-p~-~~~l~~L~~L~L~~ 392 (681)
+.++.+++.++.+|..+. ++|++|+|++|.++.++. .+.. +++|+.|++ +.+..+ |. |.++++|++|+|++
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~---l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIKVIPPGAFSP---YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCCEECTTSSTT---CTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCCCcCHhHhhC---CCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 467777788888877653 578888888888877654 3444 555555555 444444 22 56666666666666
Q ss_pred CCCcccCcc-ccCCCccceeccccccccCcCCCCCCCCCEEeccCCCCCcccCCCC---CCccEEecccccccccccccc
Q 005709 393 SELERLPAT-IKQFSQLRYLYLRNCNMLQSLPELPLLLSHLDASNCKRLQSLPEIS---SCLEELDISILEKLSKTTFPI 468 (681)
Q Consensus 393 n~l~~lp~~-i~~L~~L~~L~L~~c~~l~~lp~~l~~L~~L~l~~c~~l~~lp~~~---~~L~~L~l~~n~l~~~~~~~l 468 (681)
|.++.+|.. +..+++|++|+|++| .+..++ |..+ .+|+.|+|++|.++.+++..+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~--------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 148 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNAN-KINCLR--------------------VDAFQDLHNLNLLSLYDNKLQTIAKGTF 148 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCC--------------------TTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred CcCCccCHhHccCCCCCCEEECCCC-CCCEeC--------------------HHHcCCCCCCCEEECCCCcCCEECHHHH
Confidence 666666554 455556666655552 233322 2222 378888888888888888778
Q ss_pred cCCCCCcEEEccCCcc
Q 005709 469 KHGCSLMQFEFQNCWE 484 (681)
Q Consensus 469 ~~l~~L~~L~l~~c~~ 484 (681)
..+++|+.|++++|+.
T Consensus 149 ~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 149 SPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TTCTTCCEEECCSSCE
T ss_pred hCCCCCCEEEeCCCCc
Confidence 8999999999988764
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.50 E-value=2.2e-14 Score=145.58 Aligned_cols=161 Identities=17% Similarity=0.142 Sum_probs=97.6
Q ss_pred CCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCC-CCCCceEEEcCCCCccccccccccc
Q 005709 281 MSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSF-EPNYLIELNLPYSKVEQIWIGEKKA 359 (681)
Q Consensus 281 l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~lp~~~~~l 359 (681)
+.++..+++.++.. ..++ .+..+ ++|++|++++|.++.+| .+ .+++|++|+|++|.++.++. +..
T Consensus 18 l~~l~~l~l~~~~i---------~~~~-~~~~l-~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~- 83 (263)
T 1xeu_A 18 LANAVKQNLGKQSV---------TDLV-SQKEL-SGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKD- 83 (263)
T ss_dssp HHHHHHHHHTCSCT---------TSEE-CHHHH-TTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTT-
T ss_pred HHHHHHHHhcCCCc---------cccc-chhhc-CcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hcc-
Confidence 34455555655543 2222 34444 56777777777777777 44 77777777777777777665 555
Q ss_pred ccccccceecc--cCCcccCCCCCCCCCcEEEcccCCCcccCccccCCCccceeccccccccCcCCCC--CCCCCEEecc
Q 005709 360 FKLKFINLYNS--RYLTRLPEFSEIPNLERINLSGSELERLPATIKQFSQLRYLYLRNCNMLQSLPEL--PLLLSHLDAS 435 (681)
Q Consensus 360 ~~L~~L~~L~l--~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~--l~~L~~L~l~ 435 (681)
+++|+.|++ +.++.+|.+.. ++|++|++++|.++.+| .++++++|+.|++++| .++.+|.. ++
T Consensus 84 --l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~~l~~l~-------- 150 (263)
T 1xeu_A 84 --LTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIVMLGFLS-------- 150 (263)
T ss_dssp --CSSCCEEECCSSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCGGGGGCT--------
T ss_pred --CCCCCEEECCCCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCC-cCCCChHHccCC--------
Confidence 777777777 66666666444 67777777777776664 4666666666666663 34444322 34
Q ss_pred CCCCCcccCCCCCCccEEecccccccccccccccCCCCCcEEEccCCc
Q 005709 436 NCKRLQSLPEISSCLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 436 ~c~~l~~lp~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~ 483 (681)
+|+.|++++|.+.++ .. +..+++|+.|++++|.
T Consensus 151 -------------~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 151 -------------KLEVLDLHGNEITNT-GG-LTRLKKVNWIDLTGQK 183 (263)
T ss_dssp -------------TCCEEECTTSCCCBC-TT-STTCCCCCEEEEEEEE
T ss_pred -------------CCCEEECCCCcCcch-HH-hccCCCCCEEeCCCCc
Confidence 455555555555555 22 5556666666665544
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.49 E-value=7.5e-14 Score=148.56 Aligned_cols=160 Identities=19% Similarity=0.193 Sum_probs=96.0
Q ss_pred cEEEecCCCCCCCCCCCCCCCceEEEcCCCCcccccccc-c-ccccccccceecc--cCCcccCC--CCCCCCCcEEEcc
Q 005709 318 RYLHWHEYPLKTLPFSFEPNYLIELNLPYSKVEQIWIGE-K-KAFKLKFINLYNS--RYLTRLPE--FSEIPNLERINLS 391 (681)
Q Consensus 318 ~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~~~-~-~l~~L~~L~~L~l--~~l~~lp~--~~~l~~L~~L~L~ 391 (681)
+.++++++.++.+|..+ ...++.|+|++|+|+.++... . . +++|+.|++ +.+..+|. |.++++|++|+|+
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~---l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTR---LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhc---ccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 34555555555555543 123555555555555554332 2 3 555555555 55555552 6666666666666
Q ss_pred cCCCcccCcc-ccCCCccceeccccccccCcCCCC----CCCCCEEeccCCCCCcccCCC-------CCCccEEeccccc
Q 005709 392 GSELERLPAT-IKQFSQLRYLYLRNCNMLQSLPEL----PLLLSHLDASNCKRLQSLPEI-------SSCLEELDISILE 459 (681)
Q Consensus 392 ~n~l~~lp~~-i~~L~~L~~L~L~~c~~l~~lp~~----l~~L~~L~l~~c~~l~~lp~~-------~~~L~~L~l~~n~ 459 (681)
+|.++.+|.. +.++++|+.|+|++| .+..++.. +++|+.|++++| .+..+|.. +.+|+.|+|++|.
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 6666666543 566666666666663 34444322 566666666663 45556543 3388999999999
Q ss_pred ccccccccccCCCCC--cEEEccCCc
Q 005709 460 KLSKTTFPIKHGCSL--MQFEFQNCW 483 (681)
Q Consensus 460 l~~~~~~~l~~l~~L--~~L~l~~c~ 483 (681)
+..+|...+..++.+ +.|++++|+
T Consensus 175 l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 175 LKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCccCHHHhhhccHhhcceEEecCCC
Confidence 998887667777763 667777665
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.49 E-value=2.8e-13 Score=134.38 Aligned_cols=141 Identities=17% Similarity=0.132 Sum_probs=82.4
Q ss_pred ccEEEecCCCCCCCCCCCCCCCceEEEcCCCCcccc-cccccccccccccceecc--cCCcccCC--CCCCCCCcEEEcc
Q 005709 317 LRYLHWHEYPLKTLPFSFEPNYLIELNLPYSKVEQI-WIGEKKAFKLKFINLYNS--RYLTRLPE--FSEIPNLERINLS 391 (681)
Q Consensus 317 L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~~L~l--~~l~~lp~--~~~l~~L~~L~L~ 391 (681)
.+.++.+++.++.+|..+. ++|++|+|++|.++.+ |..+.. +++|+.|++ +.++.+|. |+.+++|++|+|+
T Consensus 21 ~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~---l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP-TNAQILYLHDNQITKLEPGVFDS---LINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTT---CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcCccCCCCC-CCCCEEEcCCCccCccCHHHhhC---ccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 3455666666666665442 5566666666666654 233333 444444444 34444442 4556666666666
Q ss_pred cCCCcccCcc-ccCCCccceeccccccccCcCCCCCCCCCEEeccCCCCCcccCCCCC---CccEEeccccccccccccc
Q 005709 392 GSELERLPAT-IKQFSQLRYLYLRNCNMLQSLPELPLLLSHLDASNCKRLQSLPEISS---CLEELDISILEKLSKTTFP 467 (681)
Q Consensus 392 ~n~l~~lp~~-i~~L~~L~~L~L~~c~~l~~lp~~l~~L~~L~l~~c~~l~~lp~~~~---~L~~L~l~~n~l~~~~~~~ 467 (681)
+|.++.+|.. +..+++|++|+|++ +.+.. +|..+. +|+.|++++|.+..+++..
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~---------------------lp~~~~~l~~L~~L~L~~N~l~~~~~~~ 154 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCC-NKLTE---------------------LPRGIERLTHLTHLALDQNQLKSIPHGA 154 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCS-SCCCS---------------------CCTTGGGCTTCSEEECCSSCCCCCCTTT
T ss_pred CCcCCccChhHhCcchhhCeEeccC-Ccccc---------------------cCcccccCCCCCEEECCCCcCCccCHHH
Confidence 6666655544 45555555555555 22333 333322 6777777777777777666
Q ss_pred ccCCCCCcEEEccCCc
Q 005709 468 IKHGCSLMQFEFQNCW 483 (681)
Q Consensus 468 l~~l~~L~~L~l~~c~ 483 (681)
+..+++|+.|++++|+
T Consensus 155 ~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 155 FDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTTCTTCCEEECTTSC
T ss_pred HhCCCCCCEEEeeCCC
Confidence 8888899988888775
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.48 E-value=3.3e-14 Score=144.34 Aligned_cols=127 Identities=14% Similarity=0.177 Sum_probs=110.0
Q ss_pred HhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCC-CCCCceEEEcCCCCccccccc
Q 005709 277 AFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSF-EPNYLIELNLPYSKVEQIWIG 355 (681)
Q Consensus 277 ~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~lp~~ 355 (681)
.+..+++|+.|++++|.+ ..++ ++..+ ++|++|++++|.++.+|+ + .+++|++|+|++|+++.+|..
T Consensus 36 ~~~~l~~L~~L~l~~n~i---------~~l~-~l~~l-~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~ 103 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNI---------QSLA-GMQFF-TNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGI 103 (263)
T ss_dssp CHHHHTTCSEEECTTSCC---------CCCT-TGGGC-TTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTC
T ss_pred chhhcCcCcEEECcCCCc---------ccch-HHhhC-CCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcc
Confidence 578899999999998875 3444 56666 799999999999999998 6 999999999999999988753
Q ss_pred ccccccccccceecc--cCCcccCCCCCCCCCcEEEcccCCCcccCccccCCCccceeccccccccCcC
Q 005709 356 EKKAFKLKFINLYNS--RYLTRLPEFSEIPNLERINLSGSELERLPATIKQFSQLRYLYLRNCNMLQSL 422 (681)
Q Consensus 356 ~~~l~~L~~L~~L~l--~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~~i~~L~~L~~L~L~~c~~l~~l 422 (681)
. .++|+.|++ +.++.+|.++.+++|++|++++|.++.+| .++.+++|+.|++++|. +..+
T Consensus 104 ~-----~~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~-i~~~ 165 (263)
T 1xeu_A 104 P-----SACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNE-ITNT 165 (263)
T ss_dssp C-----CSSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSC-CCBC
T ss_pred c-----cCcccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCc-Ccch
Confidence 2 288999999 88888888999999999999999999997 69999999999999954 4443
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.47 E-value=4.1e-13 Score=133.21 Aligned_cols=121 Identities=25% Similarity=0.332 Sum_probs=95.7
Q ss_pred ccCccEEEecCCCCCCCCC-CC-CCCCceEEEcCCCCccccccc-ccccccccccceecc--cCCcccCC--CCCCCCCc
Q 005709 314 PKKLRYLHWHEYPLKTLPF-SF-EPNYLIELNLPYSKVEQIWIG-EKKAFKLKFINLYNS--RYLTRLPE--FSEIPNLE 386 (681)
Q Consensus 314 ~~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~~L~l--~~l~~lp~--~~~l~~L~ 386 (681)
+++|++|++++|.++.+++ .| .+++|++|+|++|.++.+|.. +.. +++|++|++ +.++.+|. |..+++|+
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~---l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 115 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS---LTQLTVLDLGTNQLTVLPSAVFDRLVHLK 115 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---CTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc---CCCcCEEECCCCcCCccChhHhCcchhhC
Confidence 4678888888888887744 45 788888888888888877754 455 888888888 77777775 78899999
Q ss_pred EEEcccCCCcccCccccCCCccceeccccccccCcCCCC----CCCCCEEeccCCC
Q 005709 387 RINLSGSELERLPATIKQFSQLRYLYLRNCNMLQSLPEL----PLLLSHLDASNCK 438 (681)
Q Consensus 387 ~L~L~~n~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~----l~~L~~L~l~~c~ 438 (681)
+|+|++|.++.+|..+..+++|++|+|++ +.+..+|.. +++|+.|++++|.
T Consensus 116 ~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 116 ELFMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp EEECCSSCCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred eEeccCCcccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 99999999999999999999999999998 456777643 5666777776654
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.47 E-value=1.6e-13 Score=132.86 Aligned_cols=143 Identities=17% Similarity=0.159 Sum_probs=116.4
Q ss_pred cCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCCCCCCceEEEcCCCCccc-cccccc
Q 005709 279 ANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSFEPNYLIELNLPYSKVEQ-IWIGEK 357 (681)
Q Consensus 279 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~-lp~~~~ 357 (681)
..+++|+.|++++|.+ ..+| ++..+ ++|++|++++|.++.+|..-.+++|++|++++|.++. .|..+.
T Consensus 41 ~~l~~L~~L~l~~n~i---------~~l~-~l~~l-~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 109 (197)
T 4ezg_A 41 AQMNSLTYITLANINV---------TDLT-GIEYA-HNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLS 109 (197)
T ss_dssp HHHHTCCEEEEESSCC---------SCCT-TGGGC-TTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCT
T ss_pred hhcCCccEEeccCCCc---------cChH-HHhcC-CCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhc
Confidence 5678999999999875 3555 57777 7899999999988887743389999999999999986 677777
Q ss_pred ccccccccceecc--cCCcc-cCC-CCCCCCCcEEEcccCC-CcccCccccCCCccceeccccccccCcCCCC--CCCCC
Q 005709 358 KAFKLKFINLYNS--RYLTR-LPE-FSEIPNLERINLSGSE-LERLPATIKQFSQLRYLYLRNCNMLQSLPEL--PLLLS 430 (681)
Q Consensus 358 ~l~~L~~L~~L~l--~~l~~-lp~-~~~l~~L~~L~L~~n~-l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~--l~~L~ 430 (681)
. +++|++|++ +.+.. .|. ++.+++|++|++++|. ++.+| .+..+++|+.|++++| .+..++.. +++|+
T Consensus 110 ~---l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~~l~~l~~L~ 184 (197)
T 4ezg_A 110 G---LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYRGIEDFPKLN 184 (197)
T ss_dssp T---CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCTTGGGCSSCC
T ss_pred C---CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChHHhccCCCCC
Confidence 7 999999999 66665 444 9999999999999887 88887 6999999999999995 45556533 56666
Q ss_pred EEeccCC
Q 005709 431 HLDASNC 437 (681)
Q Consensus 431 ~L~l~~c 437 (681)
.|++++|
T Consensus 185 ~L~l~~N 191 (197)
T 4ezg_A 185 QLYAFSQ 191 (197)
T ss_dssp EEEECBC
T ss_pred EEEeeCc
Confidence 6666664
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.46 E-value=4.6e-13 Score=132.01 Aligned_cols=144 Identities=19% Similarity=0.196 Sum_probs=98.3
Q ss_pred cEEEecCCCCCCCCCCCCCCCceEEEcCCCCcccccc-c-ccccccccccceecc--cCCcccCC--CCCCCCCcEEEcc
Q 005709 318 RYLHWHEYPLKTLPFSFEPNYLIELNLPYSKVEQIWI-G-EKKAFKLKFINLYNS--RYLTRLPE--FSEIPNLERINLS 391 (681)
Q Consensus 318 ~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~-~-~~~l~~L~~L~~L~l--~~l~~lp~--~~~l~~L~~L~L~ 391 (681)
+.+++++|.++.+|..+ ...+++|+|++|.++.++. + +.. +++|+.|++ +.++.++. |+++++|++|+|+
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~---l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKK---LPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGG---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhcc---CCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 47788888888888765 3346788888888877632 2 444 666666666 55665553 7777777777777
Q ss_pred cCCCcccCcc-ccCCCccceeccccccccCcCCCCCCCCCEEeccCCCCCcccCCCCCCccEEecccccccccccccccC
Q 005709 392 GSELERLPAT-IKQFSQLRYLYLRNCNMLQSLPELPLLLSHLDASNCKRLQSLPEISSCLEELDISILEKLSKTTFPIKH 470 (681)
Q Consensus 392 ~n~l~~lp~~-i~~L~~L~~L~L~~c~~l~~lp~~l~~L~~L~l~~c~~l~~lp~~~~~L~~L~l~~n~l~~~~~~~l~~ 470 (681)
+|.++.+|+. +..+++|++|+|++|. +..++.. .+ ..+.+|+.|++++|.++++++..+..
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~-------------~~----~~l~~L~~L~L~~N~l~~~~~~~~~~ 151 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGND-------------SF----IGLSSVRLLSLYDNQITTVAPGAFDT 151 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTT-------------SS----TTCTTCSEEECTTSCCCCBCTTTTTT
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCc-CCeECHh-------------Hc----CCCccCCEEECCCCcCCEECHHHhcC
Confidence 7777776654 6677777777777633 3333211 00 01237888888888888886666999
Q ss_pred CCCCcEEEccCCc
Q 005709 471 GCSLMQFEFQNCW 483 (681)
Q Consensus 471 l~~L~~L~l~~c~ 483 (681)
+++|+.|++++|+
T Consensus 152 l~~L~~L~L~~N~ 164 (220)
T 2v70_A 152 LHSLSTLNLLANP 164 (220)
T ss_dssp CTTCCEEECCSCC
T ss_pred CCCCCEEEecCcC
Confidence 9999999998876
No 108
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.46 E-value=1.1e-14 Score=155.12 Aligned_cols=38 Identities=11% Similarity=0.036 Sum_probs=19.0
Q ss_pred cCccEEEecCCCCCCCCCC-----C-CC-CCceEEEcCCCCcccc
Q 005709 315 KKLRYLHWHEYPLKTLPFS-----F-EP-NYLIELNLPYSKVEQI 352 (681)
Q Consensus 315 ~~L~~L~l~~~~l~~lp~~-----~-~l-~~L~~L~L~~n~l~~l 352 (681)
++|++|++++|.++..+.. + .+ ++|++|+|++|.++..
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 124 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK 124 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH
Confidence 4555555555555543322 2 22 4555555555555543
No 109
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.46 E-value=6.6e-15 Score=154.78 Aligned_cols=187 Identities=16% Similarity=0.139 Sum_probs=145.1
Q ss_pred CCceEEEeCCCCCCCcccccccccCcccccc-ccCccEEEecCCCCCCCCCCC-CCCCceEEEcCCCCccc--ccccccc
Q 005709 283 SLTLLKFYMPECNGVPIMSSKLHLNQDLEYL-PKKLRYLHWHEYPLKTLPFSF-EPNYLIELNLPYSKVEQ--IWIGEKK 358 (681)
Q Consensus 283 ~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l-~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~--lp~~~~~ 358 (681)
.++.|+++++.. . +..+..+ .++++.|++++|.+...+..+ .+++|++|++++|.++. +|..+..
T Consensus 48 ~~~~l~l~~~~~--------~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~ 116 (336)
T 2ast_B 48 LWQTLDLTGKNL--------H---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQ 116 (336)
T ss_dssp TSSEEECTTCBC--------C---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTT
T ss_pred hheeeccccccC--------C---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhh
Confidence 377888886653 1 2223332 268999999999998877666 99999999999999874 7777777
Q ss_pred cccccccceecc--cCCc-ccCC-CCCCCCCcEEEcccC-CCc--ccCccccCCCccceeccccccccCc--CCCC---C
Q 005709 359 AFKLKFINLYNS--RYLT-RLPE-FSEIPNLERINLSGS-ELE--RLPATIKQFSQLRYLYLRNCNMLQS--LPEL---P 426 (681)
Q Consensus 359 l~~L~~L~~L~l--~~l~-~lp~-~~~l~~L~~L~L~~n-~l~--~lp~~i~~L~~L~~L~L~~c~~l~~--lp~~---l 426 (681)
+++|+.|++ +.++ ..|. ++.+++|++|++++| .++ .+|..+.++++|++|++++|..+.. +|.. +
T Consensus 117 ---~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l 193 (336)
T 2ast_B 117 ---CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV 193 (336)
T ss_dssp ---BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred ---CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence 999999999 5454 3454 888999999999977 787 3777799999999999999845553 3433 7
Q ss_pred C-CCCEEeccCCC-CC--cccCCC---CCCccEEeccccc-ccccccccccCCCCCcEEEccCCc
Q 005709 427 L-LLSHLDASNCK-RL--QSLPEI---SSCLEELDISILE-KLSKTTFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 427 ~-~L~~L~l~~c~-~l--~~lp~~---~~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~c~ 483 (681)
+ +|++|++++|. .+ ..+|.. +.+|+.|++++|. ++......+.++++|++|++++|.
T Consensus 194 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 7 99999999984 23 345544 3499999999999 654333348999999999999996
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.43 E-value=8.2e-13 Score=130.20 Aligned_cols=120 Identities=18% Similarity=0.293 Sum_probs=94.7
Q ss_pred ccCccEEEecCCCCCCCCCC-C-CCCCceEEEcCCCCcccc-cccccccccccccceecc--cCCcccCC--CCCCCCCc
Q 005709 314 PKKLRYLHWHEYPLKTLPFS-F-EPNYLIELNLPYSKVEQI-WIGEKKAFKLKFINLYNS--RYLTRLPE--FSEIPNLE 386 (681)
Q Consensus 314 ~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~~L~l--~~l~~lp~--~~~l~~L~ 386 (681)
|++|+.|++++|.++.+|+. | .+++|++|+|++|.++.+ |..+.. +++|++|++ +.++.+|. |.++++|+
T Consensus 31 ~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~---l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~ 107 (220)
T 2v9t_B 31 PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG---LRSLNSLVLYGNKITELPKSLFEGLFSLQ 107 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT---CSSCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC---CcCCCEEECCCCcCCccCHhHccCCCCCC
Confidence 46788999999998888774 5 788999999999998877 667777 889999999 88888885 78899999
Q ss_pred EEEcccCCCcccC-ccccCCCccceeccccccccCcCCCC----CCCCCEEeccCC
Q 005709 387 RINLSGSELERLP-ATIKQFSQLRYLYLRNCNMLQSLPEL----PLLLSHLDASNC 437 (681)
Q Consensus 387 ~L~L~~n~l~~lp-~~i~~L~~L~~L~L~~c~~l~~lp~~----l~~L~~L~l~~c 437 (681)
+|+|++|.++.++ ..+..+++|++|+|++ +.+..+|.. +++|+.|++++|
T Consensus 108 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 108 LLLLNANKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCCCCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCC
Confidence 9999999999875 4588889999999988 446666543 445555555553
No 111
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.42 E-value=7.2e-14 Score=148.72 Aligned_cols=226 Identities=16% Similarity=0.082 Sum_probs=158.7
Q ss_pred eecCCCcccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCC-CC-CC----
Q 005709 263 FDLSKINYLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPF-SF-EP---- 336 (681)
Q Consensus 263 l~~~~~~~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~-~~-~l---- 336 (681)
++++.+......+..+...++|+.|++++|.+... ....+...+..++.+|++|++++|.++.... .+ .+
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 78 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSI----STVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGS----CHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChH----HHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc
Confidence 44555544444555566666799999999885211 0011115566675589999999999887643 23 32
Q ss_pred -CCceEEEcCCCCcccccc-cccc-cccc-cccceecc--cCCcccCC------CCC-CCCCcEEEcccCCCc-----cc
Q 005709 337 -NYLIELNLPYSKVEQIWI-GEKK-AFKL-KFINLYNS--RYLTRLPE------FSE-IPNLERINLSGSELE-----RL 398 (681)
Q Consensus 337 -~~L~~L~L~~n~l~~lp~-~~~~-l~~L-~~L~~L~l--~~l~~lp~------~~~-l~~L~~L~L~~n~l~-----~l 398 (681)
++|++|+|++|.++..+. .+.. +..+ ++|+.|++ +.++..+. +.. .++|++|+|++|.++ .+
T Consensus 79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 899999999999986543 2222 1115 89999999 77776662 334 369999999999998 45
Q ss_pred CccccCCC-ccceeccccccccCcCCCC--------C-CCCCEEeccCCCCCcc-----cCCCC----CCccEEeccccc
Q 005709 399 PATIKQFS-QLRYLYLRNCNMLQSLPEL--------P-LLLSHLDASNCKRLQS-----LPEIS----SCLEELDISILE 459 (681)
Q Consensus 399 p~~i~~L~-~L~~L~L~~c~~l~~lp~~--------l-~~L~~L~l~~c~~l~~-----lp~~~----~~L~~L~l~~n~ 459 (681)
+..+..++ +|++|+|++|. ++..+.. . ++|++|++++|. ++. ++..+ .+|+.|++++|.
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred HHHHhcCCccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence 55666776 99999999964 5444321 3 599999999974 444 55443 389999999999
Q ss_pred cccccc----ccccCCCCCcEEEccCCc-----------------------cccccccccCh
Q 005709 460 KLSKTT----FPIKHGCSLMQFEFQNCW-----------------------ELKENKILEDS 494 (681)
Q Consensus 460 l~~~~~----~~l~~l~~L~~L~l~~c~-----------------------~L~l~~~~l~~ 494 (681)
+...+. ..+..+++|+.|++++|. .|++++|.+..
T Consensus 237 l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 987654 225778999999999885 47788887765
No 112
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.42 E-value=3.4e-14 Score=152.55 Aligned_cols=200 Identities=14% Similarity=0.066 Sum_probs=148.8
Q ss_pred CHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCC----CCC-------C-CCCCceE
Q 005709 274 SPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTL----PFS-------F-EPNYLIE 341 (681)
Q Consensus 274 ~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~l----p~~-------~-~l~~L~~ 341 (681)
...++..+++|+.|++++|.+.. .....++..+..+ ++|++|++++|.+..+ |.. + .+++|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~----~~~~~l~~~l~~~-~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~ 98 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGT----EAARWLSENIASK-KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT 98 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECH----HHHHHHHHTTTTC-TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCE
T ss_pred HHHHHhcCCCccEEECCCCCCCH----HHHHHHHHHHHhC-CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccE
Confidence 45678889999999999887511 0011233445566 7899999999877654 322 2 6799999
Q ss_pred EEcCCCCccc-----ccccccccccccccceecc--cCCcc-----cCC-CCCC---------CCCcEEEcccCCCc--c
Q 005709 342 LNLPYSKVEQ-----IWIGEKKAFKLKFINLYNS--RYLTR-----LPE-FSEI---------PNLERINLSGSELE--R 397 (681)
Q Consensus 342 L~L~~n~l~~-----lp~~~~~l~~L~~L~~L~l--~~l~~-----lp~-~~~l---------~~L~~L~L~~n~l~--~ 397 (681)
|+|++|.++. +|..+.. +++|++|++ +.++. ++. +..+ ++|++|++++|.++ .
T Consensus 99 L~Ls~n~l~~~~~~~l~~~l~~---~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~ 175 (386)
T 2ca6_A 99 VRLSDNAFGPTAQEPLIDFLSK---HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175 (386)
T ss_dssp EECCSCCCCTTTHHHHHHHHHH---CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred EECCCCcCCHHHHHHHHHHHHh---CCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH
Confidence 9999999986 6777777 999999999 55543 222 3334 89999999999996 4
Q ss_pred cC---ccccCCCccceeccccccccC------cCC-C--CCCCCCEEeccCCCCC----cccCCCCC---CccEEecccc
Q 005709 398 LP---ATIKQFSQLRYLYLRNCNMLQ------SLP-E--LPLLLSHLDASNCKRL----QSLPEISS---CLEELDISIL 458 (681)
Q Consensus 398 lp---~~i~~L~~L~~L~L~~c~~l~------~lp-~--~l~~L~~L~l~~c~~l----~~lp~~~~---~L~~L~l~~n 458 (681)
+| ..+..+++|++|++++|. ++ -+| . .+++|+.|++++|... ..+|..+. +|+.|+|++|
T Consensus 176 ~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n 254 (386)
T 2ca6_A 176 MKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred HHHHHHHHHhCCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC
Confidence 55 467889999999999964 44 233 1 2789999999997542 56665544 9999999999
Q ss_pred ccccc-----ccccc--cCCCCCcEEEccCCc
Q 005709 459 EKLSK-----TTFPI--KHGCSLMQFEFQNCW 483 (681)
Q Consensus 459 ~l~~~-----~~~~l--~~l~~L~~L~l~~c~ 483 (681)
.+... +.. + +.+++|+.|++++|.
T Consensus 255 ~i~~~~~~~l~~~-l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 255 LLSARGAAAVVDA-FSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp CCCHHHHHHHHHH-HHTCSSCCCCEEECCSSC
T ss_pred CCchhhHHHHHHH-HhhccCCCeEEEECcCCc
Confidence 99765 333 5 448999999998876
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.42 E-value=1.4e-15 Score=171.22 Aligned_cols=158 Identities=16% Similarity=0.091 Sum_probs=95.5
Q ss_pred cCccEEEecCCCCCCCCCCC-CCCCceEEEcCCCC--------------cccccccccccccccccceec-c--c-----
Q 005709 315 KKLRYLHWHEYPLKTLPFSF-EPNYLIELNLPYSK--------------VEQIWIGEKKAFKLKFINLYN-S--R----- 371 (681)
Q Consensus 315 ~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~--------------l~~lp~~~~~l~~L~~L~~L~-l--~----- 371 (681)
++|+.|++++|.++.+|..+ ++++|++|++++|. ...+|..++. |++|+.|+ + +
T Consensus 349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~---l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQY---FSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHH---HHHHHHHCGGGHHHHHHH
T ss_pred ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHH---HHhcccCcchhhcccchh
Confidence 45666666666666666666 66666666665442 1223444444 55555555 2 1
Q ss_pred --------CCcccCCCCCCCCCcEEEcccCCCcccCccccCCCccceeccccccccCcCCCC---CCCCCEEeccCCCCC
Q 005709 372 --------YLTRLPEFSEIPNLERINLSGSELERLPATIKQFSQLRYLYLRNCNMLQSLPEL---PLLLSHLDASNCKRL 440 (681)
Q Consensus 372 --------~l~~lp~~~~l~~L~~L~L~~n~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~---l~~L~~L~l~~c~~l 440 (681)
.++.+|. ..|+.|+|++|.++.+|. ++++++|+.|+|++ +.+..+|.. +++|+.|++++| .+
T Consensus 426 ~~l~l~~n~i~~l~~----~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~Ls~N-~l 498 (567)
T 1dce_A 426 RSKFLLENSVLKMEY----ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSH-NRLRALPPALAALRCLEVLQASDN-AL 498 (567)
T ss_dssp HHHHHHHHHHHHHHH----TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCSS-CC
T ss_pred hhhhhhcccccccCc----cCceEEEecCCCCCCCcC-ccccccCcEeecCc-ccccccchhhhcCCCCCEEECCCC-CC
Confidence 1222221 246777777777777765 77777777777776 345566654 667777777764 45
Q ss_pred cccCCCCC---CccEEecccccccccc-cccccCCCCCcEEEccCCc
Q 005709 441 QSLPEISS---CLEELDISILEKLSKT-TFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 441 ~~lp~~~~---~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~c~ 483 (681)
..+| .++ +|+.|+|++|.+++++ +..++.+++|+.|++++|.
T Consensus 499 ~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 499 ENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp CCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred CCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 5566 333 6777777777777763 3337777777777777665
No 114
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.41 E-value=5e-14 Score=163.36 Aligned_cols=145 Identities=12% Similarity=0.116 Sum_probs=98.9
Q ss_pred CccccccccCccEEEecCCCCCCCCCCC-CCCCceEEEcCCCCcccccccccccccccccceecc--cCCcccCC-CCCC
Q 005709 307 NQDLEYLPKKLRYLHWHEYPLKTLPFSF-EPNYLIELNLPYSKVEQIWIGEKKAFKLKFINLYNS--RYLTRLPE-FSEI 382 (681)
Q Consensus 307 ~~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~~L~l--~~l~~lp~-~~~l 382 (681)
+..+..+ ..|+.|+|++|.+..+|..+ .+++|++|+|++|.|+.+|..+.. |++|++|+| |.++.+|. |+++
T Consensus 217 ~~~~~~l-~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~---l~~L~~L~Ls~N~l~~lp~~~~~l 292 (727)
T 4b8c_D 217 KDSKYDD-QLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKN---LSNLRVLDLSHNRLTSLPAELGSC 292 (727)
T ss_dssp -----CC-CCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGG---GTTCCEEECTTSCCSSCCSSGGGG
T ss_pred hhhhccC-CCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhC---CCCCCEEeCcCCcCCccChhhcCC
Confidence 3444444 67888888888888888776 888888888888888888887777 888888888 77788886 8888
Q ss_pred CCCcEEEcccCCCcccCccccCCCccceeccccccccCcCCCCCC----CCCEEeccCCCCCcccCCCCCCccEEecccc
Q 005709 383 PNLERINLSGSELERLPATIKQFSQLRYLYLRNCNMLQSLPELPL----LLSHLDASNCKRLQSLPEISSCLEELDISIL 458 (681)
Q Consensus 383 ~~L~~L~L~~n~l~~lp~~i~~L~~L~~L~L~~c~~l~~lp~~l~----~L~~L~l~~c~~l~~lp~~~~~L~~L~l~~n 458 (681)
++|++|+|++|.|+.+|.+|++|++|++|+|++|...+.+|..+. .+..|++++|...+.+|. .|..|+++.|
T Consensus 293 ~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~---~l~~l~l~~n 369 (727)
T 4b8c_D 293 FQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH---ERRFIEINTD 369 (727)
T ss_dssp TTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---C---------
T ss_pred CCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc---ccceeEeecc
Confidence 888888888888888888888888888888888665445554421 112356677655555554 4556666665
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.41 E-value=1.2e-12 Score=128.99 Aligned_cols=137 Identities=16% Similarity=0.179 Sum_probs=94.1
Q ss_pred ceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCC-C-C-CCCCceEEEcCCCCcccccc-cccccc
Q 005709 285 TLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPF-S-F-EPNYLIELNLPYSKVEQIWI-GEKKAF 360 (681)
Q Consensus 285 ~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~-~-~-~l~~L~~L~L~~n~l~~lp~-~~~~l~ 360 (681)
+.+++++|.+ ..+|..+ +..+++|++++|.++.+++ . | .+++|++|+|++|.++.++. .+..
T Consensus 14 ~~l~~s~n~l---------~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~-- 79 (220)
T 2v70_A 14 TTVDCSNQKL---------NKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG-- 79 (220)
T ss_dssp TEEECCSSCC---------SSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT--
T ss_pred CEeEeCCCCc---------ccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC--
Confidence 4666666653 3345433 3557788888888887743 2 4 77888888888888877755 4666
Q ss_pred cccccceecc--cCCcccCC--CCCCCCCcEEEcccCCCccc-CccccCCCccceeccccccccCcC-CCC---CCCCCE
Q 005709 361 KLKFINLYNS--RYLTRLPE--FSEIPNLERINLSGSELERL-PATIKQFSQLRYLYLRNCNMLQSL-PEL---PLLLSH 431 (681)
Q Consensus 361 ~L~~L~~L~l--~~l~~lp~--~~~l~~L~~L~L~~n~l~~l-p~~i~~L~~L~~L~L~~c~~l~~l-p~~---l~~L~~ 431 (681)
+++|++|++ +.++.+|. |+++++|++|+|++|.++.+ |..+..+++|++|+|++| .+..+ |.. +++|+.
T Consensus 80 -l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~ 157 (220)
T 2v70_A 80 -ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLST 157 (220)
T ss_dssp -CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCE
T ss_pred -CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCE
Confidence 788888888 67777764 78888888888888888876 456888888888888874 45544 322 445555
Q ss_pred EeccCC
Q 005709 432 LDASNC 437 (681)
Q Consensus 432 L~l~~c 437 (681)
|++++|
T Consensus 158 L~L~~N 163 (220)
T 2v70_A 158 LNLLAN 163 (220)
T ss_dssp EECCSC
T ss_pred EEecCc
Confidence 555554
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.40 E-value=2.6e-14 Score=165.81 Aligned_cols=149 Identities=16% Similarity=0.180 Sum_probs=88.6
Q ss_pred cCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCC-CCCCceEEEcCCCCccc
Q 005709 273 LSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSF-EPNYLIELNLPYSKVEQ 351 (681)
Q Consensus 273 ~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~ 351 (681)
+.+..|..+++|+.|+|++|.+ ..+|..+..+ ++|++|+|++|.++.+|..+ .+++|++|+|++|.|+.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l---------~~l~~~~~~l-~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~ 284 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQI---------FNISANIFKY-DFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS 284 (727)
T ss_dssp -------CCCCCCEEECTTSCC---------SCCCGGGGGC-CSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSS
T ss_pred cChhhhccCCCCcEEECCCCCC---------CCCChhhcCC-CCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCc
Confidence 4456677777777777777663 3566666665 56777777777777777766 77777777777777777
Q ss_pred ccccccccccccccceecc--cCCcccCC-CCCCCCCcEEEcccCCCcc-cCccccCCCc-cceeccccccccCcCCCCC
Q 005709 352 IWIGEKKAFKLKFINLYNS--RYLTRLPE-FSEIPNLERINLSGSELER-LPATIKQFSQ-LRYLYLRNCNMLQSLPELP 426 (681)
Q Consensus 352 lp~~~~~l~~L~~L~~L~l--~~l~~lp~-~~~l~~L~~L~L~~n~l~~-lp~~i~~L~~-L~~L~L~~c~~l~~lp~~l 426 (681)
+|..+.. |++|++|+| |.++.+|. |+++++|++|+|++|.++. +|..+..+.. +..|+|++|...+.+|.
T Consensus 285 lp~~~~~---l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~-- 359 (727)
T 4b8c_D 285 LPAELGS---CFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH-- 359 (727)
T ss_dssp CCSSGGG---GTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--
T ss_pred cChhhcC---CCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc--
Confidence 7777766 777777777 66777775 7777777777777777764 3444443322 22356666555444443
Q ss_pred CCCCEEeccCC
Q 005709 427 LLLSHLDASNC 437 (681)
Q Consensus 427 ~~L~~L~l~~c 437 (681)
.|+.|+++.|
T Consensus 360 -~l~~l~l~~n 369 (727)
T 4b8c_D 360 -ERRFIEINTD 369 (727)
T ss_dssp -C---------
T ss_pred -ccceeEeecc
Confidence 4555666554
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.40 E-value=6.6e-13 Score=141.19 Aligned_cols=160 Identities=21% Similarity=0.201 Sum_probs=116.8
Q ss_pred ceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCC-C--CCCCceEEEcCCCCcccccc-cccccc
Q 005709 285 TLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFS-F--EPNYLIELNLPYSKVEQIWI-GEKKAF 360 (681)
Q Consensus 285 ~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~--~l~~L~~L~L~~n~l~~lp~-~~~~l~ 360 (681)
+.++++++.+ ..+|.. ++..++.|++++|.++.+|.. + .+.+|++|+|++|.|+.++. .+..
T Consensus 21 ~~l~c~~~~l---------~~iP~~---~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~-- 86 (361)
T 2xot_A 21 NILSCSKQQL---------PNVPQS---LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP-- 86 (361)
T ss_dssp TEEECCSSCC---------SSCCSS---CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTT--
T ss_pred CEEEeCCCCc---------CccCcc---CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccC--
Confidence 4566665553 334443 345688888888888887765 3 67888888888888887764 4666
Q ss_pred cccccceecc--cCCcccCC--CCCCCCCcEEEcccCCCccc-CccccCCCccceeccccccccCcCCCC-------CCC
Q 005709 361 KLKFINLYNS--RYLTRLPE--FSEIPNLERINLSGSELERL-PATIKQFSQLRYLYLRNCNMLQSLPEL-------PLL 428 (681)
Q Consensus 361 ~L~~L~~L~l--~~l~~lp~--~~~l~~L~~L~L~~n~l~~l-p~~i~~L~~L~~L~L~~c~~l~~lp~~-------l~~ 428 (681)
+++|++|++ +.+..+|. |.++++|++|+|++|.++.+ |..+..+++|+.|+|++ +.+..+|.. +++
T Consensus 87 -l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~ 164 (361)
T 2xot_A 87 -VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPK 164 (361)
T ss_dssp -CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTT
T ss_pred -CCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCc
Confidence 888888888 77777774 78888888888888888877 44688888888888888 557777753 678
Q ss_pred CCEEeccCCCCCcccCCC-CC-----CccEEeccccccc
Q 005709 429 LSHLDASNCKRLQSLPEI-SS-----CLEELDISILEKL 461 (681)
Q Consensus 429 L~~L~l~~c~~l~~lp~~-~~-----~L~~L~l~~n~l~ 461 (681)
|+.|++++| .+..+|.. +. .|+.|++++|.+.
T Consensus 165 L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 165 LMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCEEECCCC-CCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 888999884 56677642 22 2577899888765
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.39 E-value=9.1e-13 Score=123.83 Aligned_cols=131 Identities=18% Similarity=0.173 Sum_probs=97.2
Q ss_pred CCCCCceEEEeCCCCCCCcccccc-cccCccccccccCccEEEecCCCCCCCCCCC-CCCCceEEEcCCCCccc-ccccc
Q 005709 280 NMSSLTLLKFYMPECNGVPIMSSK-LHLNQDLEYLPKKLRYLHWHEYPLKTLPFSF-EPNYLIELNLPYSKVEQ-IWIGE 356 (681)
Q Consensus 280 ~l~~L~~L~l~~n~~~~~~~~~~~-~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~-lp~~~ 356 (681)
..++|+.|++++|.+ . +.+|..+..+ ++|++|++++|.++.+ ..+ .+++|++|++++|.++. +|..+
T Consensus 22 ~~~~L~~L~l~~n~l--------~~~~i~~~~~~l-~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 91 (168)
T 2ell_A 22 TPAAVRELVLDNCKS--------NDGKIEGLTAEF-VNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLA 91 (168)
T ss_dssp CTTSCSEEECCSCBC--------BTTBCSSCCGGG-GGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHH
T ss_pred CcccCCEEECCCCCC--------ChhhHHHHHHhC-CCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHH
Confidence 347788888888775 2 4667766666 6888899988888888 555 88888888888888887 66666
Q ss_pred cccccccccceecc--cCCcccC--C-CCCCCCCcEEEcccCCCcccCc----cccCCCccceeccccccccCcCCC
Q 005709 357 KKAFKLKFINLYNS--RYLTRLP--E-FSEIPNLERINLSGSELERLPA----TIKQFSQLRYLYLRNCNMLQSLPE 424 (681)
Q Consensus 357 ~~l~~L~~L~~L~l--~~l~~lp--~-~~~l~~L~~L~L~~n~l~~lp~----~i~~L~~L~~L~L~~c~~l~~lp~ 424 (681)
.. +++|++|++ +.++.+| . ++.+++|++|++++|.++.+|. .+..+++|++|++++| ....+|.
T Consensus 92 ~~---l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~ 164 (168)
T 2ell_A 92 EK---LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD 164 (168)
T ss_dssp HH---CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred hh---CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence 56 777778777 6666665 3 7777788888888777777776 5777778888887774 3455553
No 119
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.33 E-value=6.8e-14 Score=153.69 Aligned_cols=142 Identities=18% Similarity=0.126 Sum_probs=64.8
Q ss_pred CCceEEEcCCCCccc-----ccccccccccccccceecc--cCCccc------CC-CCCCCCCcEEEcccCCCcc-----
Q 005709 337 NYLIELNLPYSKVEQ-----IWIGEKKAFKLKFINLYNS--RYLTRL------PE-FSEIPNLERINLSGSELER----- 397 (681)
Q Consensus 337 ~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~~L~l--~~l~~l------p~-~~~l~~L~~L~L~~n~l~~----- 397 (681)
++|++|++++|.++. ++..+.. +++|+.|++ +.++.. +. +..+++|++|++++|.++.
T Consensus 199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~---~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 275 (461)
T 1z7x_W 199 CQLEALKLESCGVTSDNCRDLCGIVAS---KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGD 275 (461)
T ss_dssp CCCCEEECTTSCCBTTHHHHHHHHHHH---CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHH
T ss_pred CCceEEEccCCCCcHHHHHHHHHHHHh---CCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHH
Confidence 355555555555543 3333333 555555555 333221 11 2345556666666555554
Q ss_pred cCccccCCCccceeccccccccCc-----C----CCCCCCCCEEeccCCCCCcc----cCCCC---CCccEEeccccccc
Q 005709 398 LPATIKQFSQLRYLYLRNCNMLQS-----L----PELPLLLSHLDASNCKRLQS----LPEIS---SCLEELDISILEKL 461 (681)
Q Consensus 398 lp~~i~~L~~L~~L~L~~c~~l~~-----l----p~~l~~L~~L~l~~c~~l~~----lp~~~---~~L~~L~l~~n~l~ 461 (681)
++..+.++++|++|++++|. ++. + ....++|+.|++++|..... +|..+ .+|++|++++|.+.
T Consensus 276 l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 354 (461)
T 1z7x_W 276 LCRVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354 (461)
T ss_dssp HHHHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred HHHHHhhCCCcceEECCCCC-CchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccc
Confidence 45555555566666665542 221 1 01123555666655532211 22222 25556666555554
Q ss_pred ccccccccC-----CCCCcEEEccCC
Q 005709 462 SKTTFPIKH-----GCSLMQFEFQNC 482 (681)
Q Consensus 462 ~~~~~~l~~-----l~~L~~L~l~~c 482 (681)
......+.. .++|++|++++|
T Consensus 355 ~~~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 355 DAGVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred cccHHHHHHHHcCCCCceEEEECCCC
Confidence 432211211 445555555555
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.33 E-value=1.2e-12 Score=123.13 Aligned_cols=119 Identities=24% Similarity=0.255 Sum_probs=76.3
Q ss_pred ccCccEEEecCCCCC--CCCCCC-CCCCceEEEcCCCCcccccccccccccccccceecc--cCCcc-cCC-CCCCCCCc
Q 005709 314 PKKLRYLHWHEYPLK--TLPFSF-EPNYLIELNLPYSKVEQIWIGEKKAFKLKFINLYNS--RYLTR-LPE-FSEIPNLE 386 (681)
Q Consensus 314 ~~~L~~L~l~~~~l~--~lp~~~-~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~~L~l--~~l~~-lp~-~~~l~~L~ 386 (681)
|++|+.|++++|.++ .+|..+ .+++|++|++++|.++.+ ..+.. +++|++|++ +.+.. +|. +..+++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~---l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPK---LPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCC---CSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhcc---CCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 467888888888887 788776 788888888888888766 44444 666666666 55555 444 44566666
Q ss_pred EEEcccCCCcccC--ccccCCCccceeccccccccCcCCC----C---CCCCCEEeccCC
Q 005709 387 RINLSGSELERLP--ATIKQFSQLRYLYLRNCNMLQSLPE----L---PLLLSHLDASNC 437 (681)
Q Consensus 387 ~L~L~~n~l~~lp--~~i~~L~~L~~L~L~~c~~l~~lp~----~---l~~L~~L~l~~c 437 (681)
+|++++|.++.+| ..++.+++|++|++++| .+..+|. . +++|++|++++|
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCC
Confidence 6666666666654 45666666666666663 3444444 1 445555555443
No 121
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.32 E-value=1e-13 Score=152.27 Aligned_cols=200 Identities=19% Similarity=0.169 Sum_probs=137.5
Q ss_pred HHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCC-----CCCCC-CCCCceEEEcCCCC
Q 005709 275 PQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKT-----LPFSF-EPNYLIELNLPYSK 348 (681)
Q Consensus 275 ~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~-----lp~~~-~l~~L~~L~L~~n~ 348 (681)
+..+..+++|+.|++++|.+.. .....+...+..-.++|++|++++|.++. +|..+ .+++|++|++++|.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~----~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINE----AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHH----HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHhhCCCCCEEECcCCCcch----HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 5567788999999999876510 00011222222222589999999998886 45555 78899999999998
Q ss_pred cccc-----ccc-ccccccccccceecc--cCCcc-----cCC-CCCCCCCcEEEcccCCCcccC-cccc-----CCCcc
Q 005709 349 VEQI-----WIG-EKKAFKLKFINLYNS--RYLTR-----LPE-FSEIPNLERINLSGSELERLP-ATIK-----QFSQL 408 (681)
Q Consensus 349 l~~l-----p~~-~~~l~~L~~L~~L~l--~~l~~-----lp~-~~~l~~L~~L~L~~n~l~~lp-~~i~-----~L~~L 408 (681)
++.. ... ... +++|+.|++ +.++. ++. +..+++|++|++++|.++..+ ..+. ..++|
T Consensus 239 l~~~~~~~l~~~~~~~---~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L 315 (461)
T 1z7x_W 239 LGDVGMAELCPGLLHP---SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL 315 (461)
T ss_dssp CHHHHHHHHHHHHTST---TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCC
T ss_pred CChHHHHHHHHHHhcC---CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccc
Confidence 8753 122 224 788999999 66665 565 677899999999988886322 1222 23689
Q ss_pred ceeccccccccCc----CCCC---CCCCCEEeccCCCCCccc-C----CC----CCCccEEeccccccc-----cccccc
Q 005709 409 RYLYLRNCNMLQS----LPEL---PLLLSHLDASNCKRLQSL-P----EI----SSCLEELDISILEKL-----SKTTFP 467 (681)
Q Consensus 409 ~~L~L~~c~~l~~----lp~~---l~~L~~L~l~~c~~l~~l-p----~~----~~~L~~L~l~~n~l~-----~~~~~~ 467 (681)
+.|++++|..-.. +|.. +++|++|++++|. +... + .. ..+|+.|++++|.++ .++..
T Consensus 316 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~- 393 (461)
T 1z7x_W 316 ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT- 393 (461)
T ss_dssp CEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH-
T ss_pred eeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH-
Confidence 9999999763222 2322 6889999999974 3321 1 11 338999999999988 45555
Q ss_pred ccCCCCCcEEEccCCc
Q 005709 468 IKHGCSLMQFEFQNCW 483 (681)
Q Consensus 468 l~~l~~L~~L~l~~c~ 483 (681)
+..+++|++|++++|.
T Consensus 394 l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 394 LLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHCCCCCEEECCSSS
T ss_pred HHhCCCccEEECCCCC
Confidence 7888999999998875
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.30 E-value=2.3e-12 Score=122.17 Aligned_cols=126 Identities=13% Similarity=0.130 Sum_probs=77.4
Q ss_pred HhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCC-CCCCceEEEcCCCCccccccc
Q 005709 277 AFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSF-EPNYLIELNLPYSKVEQIWIG 355 (681)
Q Consensus 277 ~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~lp~~ 355 (681)
.|.++++|+.|++++|.+ ..++ .+..++++|++|++++|.++.+ ..+ .+++|++|++++|.++.+|..
T Consensus 14 ~~~~~~~L~~L~l~~n~l---------~~i~-~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~ 82 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKI---------PVIE-NLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEG 82 (176)
T ss_dssp EEECTTSCEEEECTTSCC---------CSCC-CGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSC
T ss_pred hcCCcCCceEEEeeCCCC---------chhH-HhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcc
Confidence 355667777777777764 2232 3444445777777777777777 344 777777777777777777655
Q ss_pred c-cccccccccceecc--cCCcccCC---CCCCCCCcEEEcccCCCcccCcc----ccCCCccceeccccc
Q 005709 356 E-KKAFKLKFINLYNS--RYLTRLPE---FSEIPNLERINLSGSELERLPAT----IKQFSQLRYLYLRNC 416 (681)
Q Consensus 356 ~-~~l~~L~~L~~L~l--~~l~~lp~---~~~l~~L~~L~L~~n~l~~lp~~----i~~L~~L~~L~L~~c 416 (681)
+ .. +++|++|++ +.++.+|. ++.+++|++|++++|.++.+|.. ++.+++|+.|++++|
T Consensus 83 ~~~~---l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 83 LDQA---LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp HHHH---CTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred hhhc---CCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 4 44 566666666 55555552 45555666666666666555553 555555555555553
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.29 E-value=2.2e-12 Score=118.56 Aligned_cols=120 Identities=21% Similarity=0.239 Sum_probs=65.0
Q ss_pred CCCceEEEeCCCCCCCcccccc-cccCccccccccCccEEEecCCCCCCCCCCC-CCCCceEEEcCCCCccc-ccccccc
Q 005709 282 SSLTLLKFYMPECNGVPIMSSK-LHLNQDLEYLPKKLRYLHWHEYPLKTLPFSF-EPNYLIELNLPYSKVEQ-IWIGEKK 358 (681)
Q Consensus 282 ~~L~~L~l~~n~~~~~~~~~~~-~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~-lp~~~~~ 358 (681)
++|+.|++++|.+ . +.+|..+..+ ++|++|++++|.++.+ ..+ .+++|++|++++|.++. +|..+..
T Consensus 17 ~~l~~L~l~~n~l--------~~~~~~~~~~~l-~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 86 (149)
T 2je0_A 17 SDVKELVLDNSRS--------NEGKLEGLTDEF-EELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEK 86 (149)
T ss_dssp GGCSEEECTTCBC--------BTTBCCSCCTTC-TTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHH
T ss_pred ccCeEEEccCCcC--------ChhHHHHHHhhc-CCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhh
Confidence 5566666666554 2 3455544555 5666666666666666 334 66666666666666665 4444444
Q ss_pred cccccccceecc--cCCcccC--C-CCCCCCCcEEEcccCCCcccCc----cccCCCccceeccc
Q 005709 359 AFKLKFINLYNS--RYLTRLP--E-FSEIPNLERINLSGSELERLPA----TIKQFSQLRYLYLR 414 (681)
Q Consensus 359 l~~L~~L~~L~l--~~l~~lp--~-~~~l~~L~~L~L~~n~l~~lp~----~i~~L~~L~~L~L~ 414 (681)
+++|++|++ +.++.+| . ++.+++|++|++++|.++.+|. .++.+++|+.|+++
T Consensus 87 ---l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 87 ---CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ---CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ---CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 555555555 4444432 2 4555555555555555555443 34555555555543
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.29 E-value=2.7e-12 Score=118.02 Aligned_cols=117 Identities=24% Similarity=0.255 Sum_probs=94.8
Q ss_pred ccCccEEEecCCCCC--CCCCCC-CCCCceEEEcCCCCcccccccccccccccccceecc--cCCcc-cCC-CCCCCCCc
Q 005709 314 PKKLRYLHWHEYPLK--TLPFSF-EPNYLIELNLPYSKVEQIWIGEKKAFKLKFINLYNS--RYLTR-LPE-FSEIPNLE 386 (681)
Q Consensus 314 ~~~L~~L~l~~~~l~--~lp~~~-~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~~L~l--~~l~~-lp~-~~~l~~L~ 386 (681)
+++|+.|++++|.++ .+|..+ .+++|++|++++|.++.+ ..+.. +++|++|++ +.++. +|. ++.+++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~---l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPK---LNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCC---CTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhc---CCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 478999999999998 799887 899999999999999887 55666 888888888 66766 665 66688888
Q ss_pred EEEcccCCCcccC--ccccCCCccceeccccccccCcCCC---C----CCCCCEEecc
Q 005709 387 RINLSGSELERLP--ATIKQFSQLRYLYLRNCNMLQSLPE---L----PLLLSHLDAS 435 (681)
Q Consensus 387 ~L~L~~n~l~~lp--~~i~~L~~L~~L~L~~c~~l~~lp~---~----l~~L~~L~l~ 435 (681)
+|++++|.++.+| ..++.+++|++|++++| .+..+|. . +++|+.|+++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 8888888888765 67888888888888884 5666666 1 6778877765
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.28 E-value=2e-11 Score=117.58 Aligned_cols=114 Identities=26% Similarity=0.324 Sum_probs=72.6
Q ss_pred cEEEecCCCCCCCCCCCCCCCceEEEcCCCCcccccccccccccccccceecc--cCCcccCC--CCCCCCCcEEEcccC
Q 005709 318 RYLHWHEYPLKTLPFSFEPNYLIELNLPYSKVEQIWIGEKKAFKLKFINLYNS--RYLTRLPE--FSEIPNLERINLSGS 393 (681)
Q Consensus 318 ~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~~L~l--~~l~~lp~--~~~l~~L~~L~L~~n 393 (681)
++++++++.++.+|..+ ..+|++|+|++|.++.+|..+.. +++|+.|++ +.++.++. |.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~~~~~---l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPKELSN---YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCGGGGG---CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhHHHhhc---ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45666777777777654 24677777777777766665555 666666666 55666653 677777777777777
Q ss_pred CCcccCc-cccCCCccceeccccccccCcCCCC----CCCCCEEeccC
Q 005709 394 ELERLPA-TIKQFSQLRYLYLRNCNMLQSLPEL----PLLLSHLDASN 436 (681)
Q Consensus 394 ~l~~lp~-~i~~L~~L~~L~L~~c~~l~~lp~~----l~~L~~L~l~~ 436 (681)
.++.+|+ .+..+++|++|+|++ +.+..+|.. +++|+.|++++
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCS
T ss_pred ccCEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCC
Confidence 7776665 367777777777776 345555542 34444444444
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.26 E-value=8.9e-12 Score=140.16 Aligned_cols=103 Identities=17% Similarity=0.241 Sum_probs=60.4
Q ss_pred CccEEEecCCCCCCCCCCC-CCCCceEEEcCCCCcccccccccccccccccceecc--cCCcccCCCCCCCCCcEEEccc
Q 005709 316 KLRYLHWHEYPLKTLPFSF-EPNYLIELNLPYSKVEQIWIGEKKAFKLKFINLYNS--RYLTRLPEFSEIPNLERINLSG 392 (681)
Q Consensus 316 ~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~~L~l--~~l~~lp~~~~l~~L~~L~L~~ 392 (681)
.|++|++++|.++.+|. + .+++|++|+|++|.++.+|..++. +++|+.|++ |.++.+|.++++++|++|+|++
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~---l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAA---LRCLEVLQASDNALENVDGVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGG---CTTCCEEECCSSCCCCCGGGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhc---CCCCCEEECCCCCCCCCcccCCCCCCcEEECCC
Confidence 35566666666666655 4 566666666666666666655555 666666666 5555555556666666666666
Q ss_pred CCCccc--CccccCCCccceeccccccccCcCC
Q 005709 393 SELERL--PATIKQFSQLRYLYLRNCNMLQSLP 423 (681)
Q Consensus 393 n~l~~l--p~~i~~L~~L~~L~L~~c~~l~~lp 423 (681)
|.++.+ |..++.+++|+.|+|++| .+..+|
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~ 549 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEE 549 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTS-GGGGSS
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCC-cCCCCc
Confidence 666655 555666666666666653 344443
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.25 E-value=6.7e-12 Score=118.93 Aligned_cols=118 Identities=14% Similarity=0.180 Sum_probs=75.6
Q ss_pred cCccEEEecCCCCCCCCCCCCCC-CceEEEcCCCCcccccccccccccccccceecc--cCCcccCC--CCCCCCCcEEE
Q 005709 315 KKLRYLHWHEYPLKTLPFSFEPN-YLIELNLPYSKVEQIWIGEKKAFKLKFINLYNS--RYLTRLPE--FSEIPNLERIN 389 (681)
Q Consensus 315 ~~L~~L~l~~~~l~~lp~~~~l~-~L~~L~L~~n~l~~lp~~~~~l~~L~~L~~L~l--~~l~~lp~--~~~l~~L~~L~ 389 (681)
.+|+.|++++|.++.+|....+. +|++|++++|.++.+ ..+.. +++|++|++ +.++.+|. ++.+++|++|+
T Consensus 19 ~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~---l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPL---LRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCC---CSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-ccccc---CCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 67888888888888886544444 888888888888776 44444 666666666 55666653 36666666666
Q ss_pred cccCCCcccCc--cccCCCccceeccccccccCcCCCC-------CCCCCEEeccCC
Q 005709 390 LSGSELERLPA--TIKQFSQLRYLYLRNCNMLQSLPEL-------PLLLSHLDASNC 437 (681)
Q Consensus 390 L~~n~l~~lp~--~i~~L~~L~~L~L~~c~~l~~lp~~-------l~~L~~L~l~~c 437 (681)
+++|.++.+|. .++.+++|+.|++++| .+..+|.. +++|+.|++++|
T Consensus 95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 95 LTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 66666666665 5666666666666663 34444441 444555554443
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.24 E-value=2.6e-11 Score=116.81 Aligned_cols=118 Identities=14% Similarity=0.228 Sum_probs=95.3
Q ss_pred ceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCC-CCCCceEEEcCCCCcccccc-cccccccc
Q 005709 285 TLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSF-EPNYLIELNLPYSKVEQIWI-GEKKAFKL 362 (681)
Q Consensus 285 ~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~lp~-~~~~l~~L 362 (681)
+++++++|.+ ..+|.+ ++++|++|++++|.++.+|..| .+++|++|+|++|.|+.++. .+.. +
T Consensus 13 ~~l~~~~~~l---------~~ip~~---~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~---l 77 (193)
T 2wfh_A 13 TVVRCSNKGL---------KVLPKG---IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSN---M 77 (193)
T ss_dssp TEEECTTSCC---------SSCCSC---CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTT---C
T ss_pred CEEEcCCCCC---------CcCCCC---CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccC---C
Confidence 4566666653 345543 3467889999999988888777 88899999999999888764 4666 8
Q ss_pred cccceecc--cCCcccCC--CCCCCCCcEEEcccCCCcccCcc-ccCCCccceecccccc
Q 005709 363 KFINLYNS--RYLTRLPE--FSEIPNLERINLSGSELERLPAT-IKQFSQLRYLYLRNCN 417 (681)
Q Consensus 363 ~~L~~L~l--~~l~~lp~--~~~l~~L~~L~L~~n~l~~lp~~-i~~L~~L~~L~L~~c~ 417 (681)
++|+.|++ +.++.+|. |+++++|++|+|++|.++.+|.. +..+++|+.|++++|.
T Consensus 78 ~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 78 TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 88999998 77888874 89999999999999999998875 8889999999999864
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.23 E-value=5.2e-11 Score=114.55 Aligned_cols=95 Identities=18% Similarity=0.234 Sum_probs=52.8
Q ss_pred cEEEecCCCCCCCCCCCCCCCceEEEcCCCCccccccc--ccccccccccceecc--cCCccc-CC-CCCCCCCcEEEcc
Q 005709 318 RYLHWHEYPLKTLPFSFEPNYLIELNLPYSKVEQIWIG--EKKAFKLKFINLYNS--RYLTRL-PE-FSEIPNLERINLS 391 (681)
Q Consensus 318 ~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~~--~~~l~~L~~L~~L~l--~~l~~l-p~-~~~l~~L~~L~L~ 391 (681)
++++++++.++.+|..+. .+|++|++++|.++.++.. +.. +++|++|++ +.++.+ |. |+++++|++|+|+
T Consensus 11 ~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~---l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGR---LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGG---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCccCCcccccc---CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 455566666665655442 1556666666666555432 444 555555555 444444 22 5666666666666
Q ss_pred cCCCcccCcc-ccCCCccceeccccc
Q 005709 392 GSELERLPAT-IKQFSQLRYLYLRNC 416 (681)
Q Consensus 392 ~n~l~~lp~~-i~~L~~L~~L~L~~c 416 (681)
+|.++.+++. ++++++|++|+|++|
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N 112 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDN 112 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSS
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCC
Confidence 6666655443 556666666666653
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.23 E-value=3.1e-11 Score=116.10 Aligned_cols=119 Identities=16% Similarity=0.224 Sum_probs=96.1
Q ss_pred ceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCC--C-CCCCceEEEcCCCCcccc-cccccccc
Q 005709 285 TLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFS--F-EPNYLIELNLPYSKVEQI-WIGEKKAF 360 (681)
Q Consensus 285 ~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~--~-~l~~L~~L~L~~n~l~~l-p~~~~~l~ 360 (681)
+.+++++|.+ ..+|..+ +.+|++|++++|.++.+|.. | .+++|++|+|++|.++.+ |..+..
T Consensus 11 ~~l~~s~~~l---------~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-- 76 (192)
T 1w8a_A 11 TTVDCTGRGL---------KEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG-- 76 (192)
T ss_dssp TEEECTTSCC---------SSCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT--
T ss_pred CEEEcCCCCc---------CcCccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC--
Confidence 5677777663 4455533 35789999999999888864 6 889999999999999877 566777
Q ss_pred cccccceecc--cCCcccCC--CCCCCCCcEEEcccCCCccc-CccccCCCccceeccccccc
Q 005709 361 KLKFINLYNS--RYLTRLPE--FSEIPNLERINLSGSELERL-PATIKQFSQLRYLYLRNCNM 418 (681)
Q Consensus 361 ~L~~L~~L~l--~~l~~lp~--~~~l~~L~~L~L~~n~l~~l-p~~i~~L~~L~~L~L~~c~~ 418 (681)
+++|++|++ +.++.++. |+++++|++|+|++|.++.+ |..++.+++|++|++++|..
T Consensus 77 -l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 77 -ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp -CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred -cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 899999999 77887774 88999999999999999976 66788999999999988653
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.18 E-value=1.7e-10 Score=120.76 Aligned_cols=191 Identities=13% Similarity=0.015 Sum_probs=136.6
Q ss_pred CCCCceEEEeCCCCCCCccc--c---------cccccCcccccc--------ccCccEEEecCCCCCCCCCC-C-CCCCc
Q 005709 281 MSSLTLLKFYMPECNGVPIM--S---------SKLHLNQDLEYL--------PKKLRYLHWHEYPLKTLPFS-F-EPNYL 339 (681)
Q Consensus 281 l~~L~~L~l~~n~~~~~~~~--~---------~~~~l~~~l~~l--------~~~L~~L~l~~~~l~~lp~~-~-~l~~L 339 (681)
+++|+.|+|++|....+... . ....+|...+.- .++|+.|++.. .++.++.. | ++++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 78899999998876411100 0 011455554444 47899999998 88888876 5 89999
Q ss_pred eEEEcCCCCccccccc-ccccccccccceecccC------CcccCC--C-------------------------------
Q 005709 340 IELNLPYSKVEQIWIG-EKKAFKLKFINLYNSRY------LTRLPE--F------------------------------- 379 (681)
Q Consensus 340 ~~L~L~~n~l~~lp~~-~~~l~~L~~L~~L~l~~------l~~lp~--~------------------------------- 379 (681)
+.|+++.|.+..++.. +.. +.++..+.... ...+.+ |
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~---~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~ 203 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALAD---SVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRD 203 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCT---TTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGG
T ss_pred ceEEcCCCCccccchhhhcC---CCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccc
Confidence 9999999988777554 333 44555544411 111110 0
Q ss_pred -------------------CCCCCCcEEEcccCCCcccCcc-ccCCCccceeccccccccCcCCCC----CCCCC-EEec
Q 005709 380 -------------------SEIPNLERINLSGSELERLPAT-IKQFSQLRYLYLRNCNMLQSLPEL----PLLLS-HLDA 434 (681)
Q Consensus 380 -------------------~~l~~L~~L~L~~n~l~~lp~~-i~~L~~L~~L~L~~c~~l~~lp~~----l~~L~-~L~l 434 (681)
..+++|+.|+|+.|+++.+|.. |.++++|+.|++.++ +..++.. +++|+ .+.+
T Consensus 204 ~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l 281 (329)
T 3sb4_A 204 INFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLEL 281 (329)
T ss_dssp CSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEE
T ss_pred cceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEE
Confidence 0267899999998889998876 888999999999873 8888875 77888 8988
Q ss_pred cCCCCCcccCCCCC----CccEEecccccccccccccccCCCCCcEEEc
Q 005709 435 SNCKRLQSLPEISS----CLEELDISILEKLSKTTFPIKHGCSLMQFEF 479 (681)
Q Consensus 435 ~~c~~l~~lp~~~~----~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 479 (681)
.+ .+..++.... +|+.|++++|.+..++...|.++++|+.++.
T Consensus 282 ~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 282 PA--SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CT--TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred cc--cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 76 5777765433 8999999999999999888999999988864
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.17 E-value=1.6e-10 Score=109.45 Aligned_cols=115 Identities=22% Similarity=0.325 Sum_probs=55.1
Q ss_pred cEEEecCCCCCCCCCCCCCCCceEEEcCCCCccccccc-ccccccccccceecc--cCCcccCC--CCCCCCCcEEEccc
Q 005709 318 RYLHWHEYPLKTLPFSFEPNYLIELNLPYSKVEQIWIG-EKKAFKLKFINLYNS--RYLTRLPE--FSEIPNLERINLSG 392 (681)
Q Consensus 318 ~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~~L~l--~~l~~lp~--~~~l~~L~~L~L~~ 392 (681)
+.++++++.++.+|..+ .++|++|++++|.++.+|.. +.. +++|++|++ +.++.+|. ++.+++|++|++++
T Consensus 10 ~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~---l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDK---LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCSSCCTTC-CTTCSEEECCSSCCCCCCTTTTTT---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCccCCCCC-CCCCcEEEeCCCcccEeCHHHhcC---cccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 34455555555555332 23455555555555544332 233 444444444 33444442 45555566666665
Q ss_pred CCCcccCcc-ccCCCccceeccccccccCcCCCC----CCCCCEEeccCC
Q 005709 393 SELERLPAT-IKQFSQLRYLYLRNCNMLQSLPEL----PLLLSHLDASNC 437 (681)
Q Consensus 393 n~l~~lp~~-i~~L~~L~~L~L~~c~~l~~lp~~----l~~L~~L~l~~c 437 (681)
|.++.+|.. ++.+++|++|++++| .++.+|.. +++|++|++++|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCC
Confidence 555555543 455555555555552 34444432 334444444443
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.14 E-value=1.9e-10 Score=108.88 Aligned_cols=103 Identities=21% Similarity=0.397 Sum_probs=83.6
Q ss_pred ccCccEEEecCCCCCCCCCC-C-CCCCceEEEcCCCCccccccc-ccccccccccceecc--cCCcccCC--CCCCCCCc
Q 005709 314 PKKLRYLHWHEYPLKTLPFS-F-EPNYLIELNLPYSKVEQIWIG-EKKAFKLKFINLYNS--RYLTRLPE--FSEIPNLE 386 (681)
Q Consensus 314 ~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~~L~l--~~l~~lp~--~~~l~~L~ 386 (681)
+++|+.|++++|.++.+|.. + .+++|++|++++|.++.+|.. +.. +++|+.|++ +.++.+|. ++.+++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 103 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDK---LTKLTILYLHENKLQSLPNGVFDKLTQLK 103 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT---CTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccC---CCccCEEECCCCCccccCHHHhhCCcccC
Confidence 36788888888888887765 4 788888888888888877654 456 888888888 77777775 78899999
Q ss_pred EEEcccCCCcccCcc-ccCCCccceecccccccc
Q 005709 387 RINLSGSELERLPAT-IKQFSQLRYLYLRNCNML 419 (681)
Q Consensus 387 ~L~L~~n~l~~lp~~-i~~L~~L~~L~L~~c~~l 419 (681)
+|++++|.++.+|.. +..+++|++|++++|...
T Consensus 104 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 104 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 999999999988876 578999999999986543
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.13 E-value=2.1e-13 Score=132.10 Aligned_cols=103 Identities=16% Similarity=0.161 Sum_probs=51.4
Q ss_pred cccccccCccEEEecCCCCCCCCCCC-CCCCceEEEcCCCCcccccccccccccccccceecc--cCCcccCCCCCCCCC
Q 005709 309 DLEYLPKKLRYLHWHEYPLKTLPFSF-EPNYLIELNLPYSKVEQIWIGEKKAFKLKFINLYNS--RYLTRLPEFSEIPNL 385 (681)
Q Consensus 309 ~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~~L~l--~~l~~lp~~~~l~~L 385 (681)
.+..+ ++|++|++++|.++.+| .+ .+++|++|++++|.++.+|..+.. +++|+.|++ +.++.+|.++.+++|
T Consensus 43 ~~~~l-~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~---~~~L~~L~L~~N~l~~l~~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTL-KACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAV---ADTLEELWISYNQIASLSGIEKLVNL 117 (198)
T ss_dssp HHHHT-TTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHH---HHHCSEEEEEEEECCCHHHHHHHHHS
T ss_pred HHhcC-CCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhc---CCcCCEEECcCCcCCcCCccccCCCC
Confidence 34344 44555555555555555 33 455555555555555555544443 444555554 444444444445555
Q ss_pred cEEEcccCCCcccCc--cccCCCccceeccccc
Q 005709 386 ERINLSGSELERLPA--TIKQFSQLRYLYLRNC 416 (681)
Q Consensus 386 ~~L~L~~n~l~~lp~--~i~~L~~L~~L~L~~c 416 (681)
++|++++|.++.+|. .+..+++|++|++++|
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence 555555555554433 3455555555555553
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.04 E-value=6e-10 Score=105.24 Aligned_cols=95 Identities=18% Similarity=0.284 Sum_probs=53.4
Q ss_pred cEEEecCCCCCCCCCCCCCCCceEEEcCCCCcccc-cccccccccccccceecc--cCCcccCC--CCCCCCCcEEEccc
Q 005709 318 RYLHWHEYPLKTLPFSFEPNYLIELNLPYSKVEQI-WIGEKKAFKLKFINLYNS--RYLTRLPE--FSEIPNLERINLSG 392 (681)
Q Consensus 318 ~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~~L~l--~~l~~lp~--~~~l~~L~~L~L~~ 392 (681)
+.+++++|.++.+|..+. .+|++|+|++|.|+.+ |..+.. +++|++|++ +.++.+|. |+++++|++|+|++
T Consensus 15 ~~l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~l~~~~~~~~~~---l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP-TDKQRLWLNNNQITKLEPGVFDH---LVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTT---CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCCccCCCcC-CCCcEEEeCCCCccccCHHHhcC---CcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 455555555555555442 5555666666655555 223344 455555555 44444543 45666666666666
Q ss_pred CCCcccCcc-ccCCCccceeccccc
Q 005709 393 SELERLPAT-IKQFSQLRYLYLRNC 416 (681)
Q Consensus 393 n~l~~lp~~-i~~L~~L~~L~L~~c 416 (681)
|.++.+|+. +..+++|++|+|++|
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred CccceeCHHHhccccCCCEEEeCCC
Confidence 666666654 666666666666663
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.03 E-value=6.9e-10 Score=104.40 Aligned_cols=96 Identities=19% Similarity=0.281 Sum_probs=58.2
Q ss_pred ccEEEecCCCCCCCCCCCCCCCceEEEcCCCCcccc-cccccccccccccceecc--cCCcccCC--CCCCCCCcEEEcc
Q 005709 317 LRYLHWHEYPLKTLPFSFEPNYLIELNLPYSKVEQI-WIGEKKAFKLKFINLYNS--RYLTRLPE--FSEIPNLERINLS 391 (681)
Q Consensus 317 L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~~L~l--~~l~~lp~--~~~l~~L~~L~L~ 391 (681)
.+.+++++|.++.+|..+ ..+|++|+|++|.|+.+ |..+.. +++|++|++ +.+..+|. |.++++|++|+|+
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~---l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDR---LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTT---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcC---cccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 355666666666666554 25566666666666655 333444 555555555 55555553 5666677777777
Q ss_pred cCCCcccCcc-ccCCCccceeccccc
Q 005709 392 GSELERLPAT-IKQFSQLRYLYLRNC 416 (681)
Q Consensus 392 ~n~l~~lp~~-i~~L~~L~~L~L~~c 416 (681)
+|.++.+|+. +.++++|++|+|++|
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCC
Confidence 7777666654 666666666666664
No 137
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.02 E-value=1.8e-11 Score=138.72 Aligned_cols=33 Identities=15% Similarity=0.134 Sum_probs=17.3
Q ss_pred CCccEEecccccccccccccccC-CCCCcEEEcc
Q 005709 448 SCLEELDISILEKLSKTTFPIKH-GCSLMQFEFQ 480 (681)
Q Consensus 448 ~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~l~ 480 (681)
.+|++|+++.|.++......+.. +++|+.|+++
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence 36666666555554432222333 5666666665
No 138
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.99 E-value=2.3e-11 Score=137.91 Aligned_cols=125 Identities=13% Similarity=0.030 Sum_probs=56.7
Q ss_pred CCCCCceEEEeCCCCCCCcccccccccCccccc-cccCccEEEecCCC-CC--CCCCCC-CCCCceEEEcCCCCcccc--
Q 005709 280 NMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEY-LPKKLRYLHWHEYP-LK--TLPFSF-EPNYLIELNLPYSKVEQI-- 352 (681)
Q Consensus 280 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~-l~~~L~~L~l~~~~-l~--~lp~~~-~l~~L~~L~L~~n~l~~l-- 352 (681)
++++|+.|++++|.. ....+..+.. ++++|++|++++|. ++ .++... .+++|++|+|++|.++..
T Consensus 110 ~~~~L~~L~L~~~~i--------~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~ 181 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIV--------SDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDG 181 (592)
T ss_dssp HCTTCCEEEEESCBC--------CHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCS
T ss_pred hCCCCCeEEeeccEe--------cHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcch
Confidence 556666666665433 1222222222 22235666665554 11 111112 345556666665554321
Q ss_pred ---cccccccccccccceecc--cCCc-----ccCC-CCCCCCCcEEEcccCCCcccCccccCCCccceecccc
Q 005709 353 ---WIGEKKAFKLKFINLYNS--RYLT-----RLPE-FSEIPNLERINLSGSELERLPATIKQFSQLRYLYLRN 415 (681)
Q Consensus 353 ---p~~~~~l~~L~~L~~L~l--~~l~-----~lp~-~~~l~~L~~L~L~~n~l~~lp~~i~~L~~L~~L~L~~ 415 (681)
+..... +++|+.|++ +.+. .++. +.++++|++|+++++.+..+|..++++++|+.|++++
T Consensus 182 ~~l~~~~~~---~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 182 KWLHELAQH---NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp HHHHHHHHH---CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECB
T ss_pred hHHHHHHhc---CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccc
Confidence 111222 555555555 3332 1222 3445555666665555555555555555555555553
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.95 E-value=6.6e-12 Score=121.41 Aligned_cols=123 Identities=19% Similarity=0.243 Sum_probs=104.8
Q ss_pred HHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCC-CCCCceEEEcCCCCccccc
Q 005709 275 PQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSF-EPNYLIELNLPYSKVEQIW 353 (681)
Q Consensus 275 ~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~lp 353 (681)
+..|.++++|+.|++++|.+ ..+| .+..+ ++|++|++++|.++.+|..+ .+++|++|++++|.++.+|
T Consensus 41 ~~~~~~l~~L~~L~ls~n~l---------~~l~-~~~~l-~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~ 109 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTNNI---------EKIS-SLSGM-ENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS 109 (198)
T ss_dssp HHHHHHTTTCSEEECSEEEE---------SCCC-CHHHH-TTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH
T ss_pred hHHHhcCCCCCEEECCCCCC---------cccc-ccccC-CCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC
Confidence 45899999999999998875 3356 66667 78999999999999999877 6799999999999999987
Q ss_pred ccccccccccccceecc--cCCcccCC---CCCCCCCcEEEcccCCCcccCcc-----------ccCCCccceec
Q 005709 354 IGEKKAFKLKFINLYNS--RYLTRLPE---FSEIPNLERINLSGSELERLPAT-----------IKQFSQLRYLY 412 (681)
Q Consensus 354 ~~~~~l~~L~~L~~L~l--~~l~~lp~---~~~l~~L~~L~L~~n~l~~lp~~-----------i~~L~~L~~L~ 412 (681)
.+.. +++|++|++ +.+..+|. +..+++|++|++++|.+...++. +..+++|+.|+
T Consensus 110 -~~~~---l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 110 -GIEK---LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp -HHHH---HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred -cccc---CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 5666 999999999 77887663 89999999999999999765333 78888899887
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.94 E-value=2.1e-09 Score=101.41 Aligned_cols=107 Identities=19% Similarity=0.209 Sum_probs=88.2
Q ss_pred ceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCC-CC-CCCCceEEEcCCCCcccccccc-ccccc
Q 005709 285 TLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPF-SF-EPNYLIELNLPYSKVEQIWIGE-KKAFK 361 (681)
Q Consensus 285 ~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~n~l~~lp~~~-~~l~~ 361 (681)
+.+++++|.+ ..+|..+ +++|++|++++|.++.+|+ .| .+++|++|+|++|+|+.+|... ..
T Consensus 15 ~~l~~~~n~l---------~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~--- 79 (174)
T 2r9u_A 15 TLVNCQNIRL---------ASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK--- 79 (174)
T ss_dssp SEEECCSSCC---------SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---
T ss_pred cEEEeCCCCC---------CccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCC---
Confidence 6788887763 5566544 4789999999999999855 46 8999999999999999998764 66
Q ss_pred ccccceecc--cCCcccCC--CCCCCCCcEEEcccCCCcccCccccCCC
Q 005709 362 LKFINLYNS--RYLTRLPE--FSEIPNLERINLSGSELERLPATIKQFS 406 (681)
Q Consensus 362 L~~L~~L~l--~~l~~lp~--~~~l~~L~~L~L~~n~l~~lp~~i~~L~ 406 (681)
+++|++|++ |.+..+|. |..+++|++|+|++|.+...+..+..+.
T Consensus 80 l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~ 128 (174)
T 2r9u_A 80 LTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLR 128 (174)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHH
T ss_pred cchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccccHHHHH
Confidence 999999999 88888885 8999999999999999987776554443
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.90 E-value=2.4e-08 Score=107.26 Aligned_cols=193 Identities=12% Similarity=0.123 Sum_probs=114.9
Q ss_pred ccccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCCC-CCCCceEEEcCCCC
Q 005709 270 YLHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFSF-EPNYLIELNLPYSK 348 (681)
Q Consensus 270 ~~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~ 348 (681)
...+...+|.+. +|+.+.+.. . ...++...+.-..+|+.+++..|.++.+|... ...+|+.+.|..+
T Consensus 146 i~~I~~~aF~~~-~L~~i~lp~-~---------l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~- 213 (401)
T 4fdw_A 146 LKSIGDMAFFNS-TVQEIVFPS-T---------LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT- 213 (401)
T ss_dssp CCEECTTTTTTC-CCCEEECCT-T---------CCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-
T ss_pred ccEECHHhcCCC-CceEEEeCC-C---------ccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-
Confidence 334566677774 577777763 2 23344333333367777777777777777664 5567777777743
Q ss_pred ccccccc-ccccccccccceecc-cCCcccCC--CCCCCCCcEEEcccCCCcccCcc-ccCCCccceeccccccc----c
Q 005709 349 VEQIWIG-EKKAFKLKFINLYNS-RYLTRLPE--FSEIPNLERINLSGSELERLPAT-IKQFSQLRYLYLRNCNM----L 419 (681)
Q Consensus 349 l~~lp~~-~~~l~~L~~L~~L~l-~~l~~lp~--~~~l~~L~~L~L~~n~l~~lp~~-i~~L~~L~~L~L~~c~~----l 419 (681)
++.++.. +.+ +++|+.+++ .++..++. |.+ .+|+.+.+ .++++.++.. |.++++|+.+.+.++.. .
T Consensus 214 l~~I~~~aF~~---~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~ 288 (401)
T 4fdw_A 214 LKEIGSQAFLK---TSQLKTIEIPENVSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPE 288 (401)
T ss_dssp CCEECTTTTTT---CTTCCCEECCTTCCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTT
T ss_pred hheehhhHhhC---CCCCCEEecCCCccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcc
Confidence 6666443 344 667777777 56666664 555 56777777 3456666443 66777777777665221 1
Q ss_pred CcCCCC----CCCCCEEeccCCCCCcccCCCCC----CccEEecccccccccccccccCCCCCcEEEccCCc
Q 005709 420 QSLPEL----PLLLSHLDASNCKRLQSLPEISS----CLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 420 ~~lp~~----l~~L~~L~l~~c~~l~~lp~~~~----~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~ 483 (681)
..++.. +++|+.+.+.+ .+..++.... +|+.+.+.. +++.+....|.++ +|+.+.+.++.
T Consensus 289 ~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~-~l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 289 AMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA-NVTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp CEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT-TCCEECTTSSSSS-CCCEEEECCSS
T ss_pred cEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc-cccEEcHHhCCCC-CCCEEEEcCCC
Confidence 134433 56677776653 3555554432 677777743 3666666666666 77777776654
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.89 E-value=5e-09 Score=98.43 Aligned_cols=102 Identities=17% Similarity=0.192 Sum_probs=84.8
Q ss_pred CceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCC-C-CCCCceEEEcCCCCcccccccc-cccc
Q 005709 284 LTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFS-F-EPNYLIELNLPYSKVEQIWIGE-KKAF 360 (681)
Q Consensus 284 L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~l~~lp~~~-~~l~ 360 (681)
.+.+++++|.+ ..+|..+ +++|++|++++|.++.+++. | .+++|++|+|++|+|+.+|... ..
T Consensus 11 ~~~l~~s~n~l---------~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~-- 76 (170)
T 3g39_A 11 GTTVDCSGKSL---------ASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK-- 76 (170)
T ss_dssp TTEEECTTSCC---------SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT--
T ss_pred CCEEEeCCCCc---------CccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccC--
Confidence 46788887774 4455544 47899999999999998554 6 8999999999999999988764 66
Q ss_pred cccccceecc--cCCcccCC--CCCCCCCcEEEcccCCCcccCc
Q 005709 361 KLKFINLYNS--RYLTRLPE--FSEIPNLERINLSGSELERLPA 400 (681)
Q Consensus 361 ~L~~L~~L~l--~~l~~lp~--~~~l~~L~~L~L~~n~l~~lp~ 400 (681)
+++|++|++ |.++.+|. |..+++|++|+|++|.+...+.
T Consensus 77 -l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 77 -LTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp -CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred -CCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 999999999 88888885 8999999999999998875554
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.80 E-value=8.4e-09 Score=107.85 Aligned_cols=74 Identities=11% Similarity=0.061 Sum_probs=39.1
Q ss_pred CCccceeccccccccCcCCCC----CCCCCEEeccCCCCCcccCCCCC----Ccc-EEecccccccccccccccCCCCCc
Q 005709 405 FSQLRYLYLRNCNMLQSLPEL----PLLLSHLDASNCKRLQSLPEISS----CLE-ELDISILEKLSKTTFPIKHGCSLM 475 (681)
Q Consensus 405 L~~L~~L~L~~c~~l~~lp~~----l~~L~~L~l~~c~~l~~lp~~~~----~L~-~L~l~~n~l~~~~~~~l~~l~~L~ 475 (681)
+++|+.|++++ +.+..+|.. +++|+.|++.++ +..++.... +|+ .+.+.+ .++.+++..|.++++|+
T Consensus 225 ~~~L~~l~L~~-n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISK-TNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTT-BCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred cCCCeEEECCC-CCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCC
Confidence 44555555554 235555544 455555555552 455554322 455 555555 55555555555566666
Q ss_pred EEEccCC
Q 005709 476 QFEFQNC 482 (681)
Q Consensus 476 ~L~l~~c 482 (681)
.++++++
T Consensus 301 ~l~l~~n 307 (329)
T 3sb4_A 301 YVLATGD 307 (329)
T ss_dssp EEEECSS
T ss_pred EEEeCCC
Confidence 5555443
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.78 E-value=1.3e-07 Score=101.37 Aligned_cols=191 Identities=11% Similarity=0.060 Sum_probs=143.6
Q ss_pred cccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCC-C-CCCCceEEEcCCCC
Q 005709 271 LHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFS-F-EPNYLIELNLPYSK 348 (681)
Q Consensus 271 ~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~ 348 (681)
..+...+|.++ +|+.+.+..+ ...++...+.- .+|+.+.+.. .++.++.. | ++.+|+.++++.|.
T Consensus 125 ~~I~~~aF~~~-~L~~i~l~~~----------i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~ 191 (401)
T 4fdw_A 125 KSIPKDAFRNS-QIAKVVLNEG----------LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK 191 (401)
T ss_dssp CEECTTTTTTC-CCSEEECCTT----------CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC
T ss_pred CEehHhhcccC-CccEEEeCCC----------ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCc
Confidence 44667788885 7999988744 23344433333 3688888886 67777765 5 88999999999999
Q ss_pred cccccccccccccccccceecc-cCCcccCC--CCCCCCCcEEEcccCCCcccCcc-ccCCCccceeccccccccCcCCC
Q 005709 349 VEQIWIGEKKAFKLKFINLYNS-RYLTRLPE--FSEIPNLERINLSGSELERLPAT-IKQFSQLRYLYLRNCNMLQSLPE 424 (681)
Q Consensus 349 l~~lp~~~~~l~~L~~L~~L~l-~~l~~lp~--~~~l~~L~~L~L~~n~l~~lp~~-i~~L~~L~~L~L~~c~~l~~lp~ 424 (681)
++.++.+... ..+|+.+.+ +.+..++. |.++++|+.+++.. +++.++.. |.+ .+|+.+.+.+ .+..++.
T Consensus 192 l~~I~~~aF~---~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~-~l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~ 264 (401)
T 4fdw_A 192 ITKLPASTFV---YAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPE-NVSTIGQEAFRE-SGITTVKLPN--GVTNIAS 264 (401)
T ss_dssp CSEECTTTTT---TCCCSEEECCTTCCEECTTTTTTCTTCCCEECCT-TCCEECTTTTTT-CCCSEEEEET--TCCEECT
T ss_pred ceEechhhEe---ecccCEEEeCCchheehhhHhhCCCCCCEEecCC-CccCcccccccc-CCccEEEeCC--CccEECh
Confidence 9999888776 688899999 77888885 88999999999985 47777765 555 7899999853 5777776
Q ss_pred C----CCCCCEEeccCCCC----CcccCCCCC----CccEEecccccccccccccccCCCCCcEEEccCC
Q 005709 425 L----PLLLSHLDASNCKR----LQSLPEISS----CLEELDISILEKLSKTTFPIKHGCSLMQFEFQNC 482 (681)
Q Consensus 425 ~----l~~L~~L~l~~c~~----l~~lp~~~~----~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c 482 (681)
. +++|+.+.+.++.. ...++.... +|+.+.+. +.+..++...|.++++|+.+.|.++
T Consensus 265 ~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 265 RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT
T ss_pred hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc
Confidence 5 78899999877422 124554433 89999998 4588888888999999999998654
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.74 E-value=3.3e-10 Score=128.32 Aligned_cols=189 Identities=17% Similarity=0.125 Sum_probs=99.4
Q ss_pred CCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCC-----CCCCC-CCCCceEEEcCCCC--cc-
Q 005709 280 NMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKT-----LPFSF-EPNYLIELNLPYSK--VE- 350 (681)
Q Consensus 280 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~-----lp~~~-~l~~L~~L~L~~n~--l~- 350 (681)
.+++|+.|+++++.. + ....++.....+ ++|++|++++|.++. ++... .+++|++|++++|. +.
T Consensus 128 ~~~~L~~L~L~~~~~--~----~~~~l~~~~~~~-~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 200 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEG--F----STDGLAAIAATC-RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSF 200 (594)
T ss_dssp HCTTCCEEEEESCEE--E----EHHHHHHHHHHC-TTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCH
T ss_pred hCCCCcEEeCCCcCC--C----CHHHHHHHHHhC-CCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCH
Confidence 567777777775421 0 000122222233 567777777776443 22222 55677777777775 21
Q ss_pred -cccccccccccccccceecc---cCCcccCC-CCCCCCCcEEEccc-------CCCcccCccccCCCcccee-cccccc
Q 005709 351 -QIWIGEKKAFKLKFINLYNS---RYLTRLPE-FSEIPNLERINLSG-------SELERLPATIKQFSQLRYL-YLRNCN 417 (681)
Q Consensus 351 -~lp~~~~~l~~L~~L~~L~l---~~l~~lp~-~~~l~~L~~L~L~~-------n~l~~lp~~i~~L~~L~~L-~L~~c~ 417 (681)
.++.-... +++|+.|++ ..+..+|. +..+++|+.|+++. +.+..++..+.++++|+.| .+.+ .
T Consensus 201 ~~l~~l~~~---~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~-~ 276 (594)
T 2p1m_B 201 SALERLVTR---CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWD-A 276 (594)
T ss_dssp HHHHHHHHH---CTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBT-C
T ss_pred HHHHHHHHh---CCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcc-c
Confidence 12222223 567777777 13344444 55667777777542 2233445556666666666 3333 1
Q ss_pred ccCcCCCC---CCCCCEEeccCCCCCcc--cC---CCCCCccEEecccccccc-cccccccCCCCCcEEEccC
Q 005709 418 MLQSLPEL---PLLLSHLDASNCKRLQS--LP---EISSCLEELDISILEKLS-KTTFPIKHGCSLMQFEFQN 481 (681)
Q Consensus 418 ~l~~lp~~---l~~L~~L~l~~c~~l~~--lp---~~~~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~ 481 (681)
....+|.. +++|++|++++|. +.. ++ ....+|+.|++++| +.. ........+++|+.|++++
T Consensus 277 ~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~ 347 (594)
T 2p1m_B 277 VPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFP 347 (594)
T ss_dssp CGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEEC
T ss_pred chhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEec
Confidence 12233332 5778888888876 332 11 13347888888877 321 1111123577788887744
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.69 E-value=8e-10 Score=125.17 Aligned_cols=193 Identities=17% Similarity=0.103 Sum_probs=124.7
Q ss_pred HhcCCCCCceEEEeCCCCCCCcccccccccCcccc-ccccCccEEEecCC-CCCC--CCCCC-CCCCceEEEcCCCCccc
Q 005709 277 AFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLE-YLPKKLRYLHWHEY-PLKT--LPFSF-EPNYLIELNLPYSKVEQ 351 (681)
Q Consensus 277 ~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~-~l~~~L~~L~l~~~-~l~~--lp~~~-~l~~L~~L~L~~n~l~~ 351 (681)
.+..+++|+.|+++++.+ ....+..+. .+ ++|++|++++| .++. ++..+ .+++|++|+|++|.++.
T Consensus 100 l~~~~~~L~~L~L~~~~~--------~~~~~~~l~~~~-~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~ 170 (594)
T 2p1m_B 100 MSSSYTWLEEIRLKRMVV--------TDDCLELIAKSF-KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDD 170 (594)
T ss_dssp HHHHCTTCCEEEEESCBC--------CHHHHHHHHHHC-TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEEC
T ss_pred HHHhCCCCCeEEeeCcEE--------cHHHHHHHHHhC-CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCC
Confidence 345788899999987764 333333333 34 68999999988 4443 44444 67889999999888654
Q ss_pred c-----cccccccccccccceecc-cCCcccC-----C-CCCCCCCcEEEcccC-CCcccCccccCCCccceeccccccc
Q 005709 352 I-----WIGEKKAFKLKFINLYNS-RYLTRLP-----E-FSEIPNLERINLSGS-ELERLPATIKQFSQLRYLYLRNCNM 418 (681)
Q Consensus 352 l-----p~~~~~l~~L~~L~~L~l-~~l~~lp-----~-~~~l~~L~~L~L~~n-~l~~lp~~i~~L~~L~~L~L~~c~~ 418 (681)
. +..... +++|+.|++ ..-..++ . +..+++|++|+++++ .+..+|..+.++++|+.|+++.|..
T Consensus 171 ~~~~~l~~~~~~---~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 247 (594)
T 2p1m_B 171 VSGHWLSHFPDT---YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTA 247 (594)
T ss_dssp CCGGGGGGSCTT---CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCC
T ss_pred cchHHHHHHhhc---CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccC
Confidence 2 222223 778888888 2212222 2 245688888888844 6667777788888888888766532
Q ss_pred ------cCcCCC---CCCCCCEE-eccCCCCCcccCCC---CCCccEEecccccccccc-cccccCCCCCcEEEccCC
Q 005709 419 ------LQSLPE---LPLLLSHL-DASNCKRLQSLPEI---SSCLEELDISILEKLSKT-TFPIKHGCSLMQFEFQNC 482 (681)
Q Consensus 419 ------l~~lp~---~l~~L~~L-~l~~c~~l~~lp~~---~~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~c 482 (681)
+..++. .+++|+.| .+.+. ....+|.. ..+|+.|++++|.+.... ...+.++++|+.|++++|
T Consensus 248 ~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~-~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 248 EVRPDVYSGLSVALSGCKELRCLSGFWDA-VPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp CCCHHHHHHHHHHHHTCTTCCEEECCBTC-CGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred ccchhhHHHHHHHHhcCCCcccccCCccc-chhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 111111 15677777 44432 23445544 349999999999976422 122568899999999987
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.65 E-value=3.9e-08 Score=103.43 Aligned_cols=93 Identities=24% Similarity=0.210 Sum_probs=56.4
Q ss_pred EEEecCC-CCCCCCCCC-CCCCceEEEcCC-CCcccccc-cccccccccccceecc--cCCcccCC--CCCCCCCcEEEc
Q 005709 319 YLHWHEY-PLKTLPFSF-EPNYLIELNLPY-SKVEQIWI-GEKKAFKLKFINLYNS--RYLTRLPE--FSEIPNLERINL 390 (681)
Q Consensus 319 ~L~l~~~-~l~~lp~~~-~l~~L~~L~L~~-n~l~~lp~-~~~~l~~L~~L~~L~l--~~l~~lp~--~~~l~~L~~L~L 390 (681)
.++.+++ .++.+|. + .+.+|++|+|++ |.|+.+|. .+.. |++|+.|+| |.+..+|. |+++++|++|+|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~---l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRG---LGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCS---CCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhcc---ccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 3466666 6777777 6 677788888875 77777653 3444 555555555 55555442 556666666666
Q ss_pred ccCCCcccCccccCCCccceecccc
Q 005709 391 SGSELERLPATIKQFSQLRYLYLRN 415 (681)
Q Consensus 391 ~~n~l~~lp~~i~~L~~L~~L~L~~ 415 (681)
++|.|+.+|+.+.....|+.|+|.+
T Consensus 88 ~~N~l~~~~~~~~~~~~L~~l~l~~ 112 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLSLQELVLSG 112 (347)
T ss_dssp CSSCCSCCCSTTTCSCCCCEEECCS
T ss_pred CCCccceeCHHHcccCCceEEEeeC
Confidence 6666666655433322366666655
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.48 E-value=2.4e-07 Score=97.28 Aligned_cols=89 Identities=17% Similarity=0.162 Sum_probs=51.8
Q ss_pred CCcccCCCCCCCCCcEEEccc-CCCcccCc-cccCCCccceeccccccccCcCCCC----CCCCCEEeccCCCCCcccCC
Q 005709 372 YLTRLPEFSEIPNLERINLSG-SELERLPA-TIKQFSQLRYLYLRNCNMLQSLPEL----PLLLSHLDASNCKRLQSLPE 445 (681)
Q Consensus 372 ~l~~lp~~~~l~~L~~L~L~~-n~l~~lp~-~i~~L~~L~~L~L~~c~~l~~lp~~----l~~L~~L~l~~c~~l~~lp~ 445 (681)
.++.+|.++.+++|++|+|++ |.++.+|+ .|++|++|+.|+|++| .+..+|+. ++
T Consensus 20 ~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~------------------ 80 (347)
T 2ifg_A 20 ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTP------------------ 80 (347)
T ss_dssp CCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCS------------------
T ss_pred CCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCc------------------
Confidence 466666666666666666663 66666653 3666666666666663 34444432 33
Q ss_pred CCCCccEEecccccccccccccccCCCCCcEEEccCCc
Q 005709 446 ISSCLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 446 ~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~ 483 (681)
+|+.|+|++|.+..+|+..+..++ |+.|+|.+|.
T Consensus 81 ---~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 81 ---RLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNP 114 (347)
T ss_dssp ---CCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSC
T ss_pred ---CCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCC
Confidence 556666666666666655444444 6666666554
No 149
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.36 E-value=3e-06 Score=88.88 Aligned_cols=185 Identities=19% Similarity=0.151 Sum_probs=114.7
Q ss_pred CeEEEEEECcChh--------HHHhhcCCCCCCCCcEEEEEeCCchhhhc----------c-C-CceEEEcCCCCHHHHH
Q 005709 23 RKVLIVLDDVDDN--------SKNFAGGLELFSPGSRIIITTRDKRLLDK----------R-R-VENVYEVKGLKHNSAL 82 (681)
Q Consensus 23 kr~LiVLDdv~~~--------~~~l~~~~~~~~~gSrIivTTR~~~v~~~----------~-~-~~~~~~l~~L~~~e~~ 82 (681)
++++|||||++.. +..+....+ ..++.++|+|+|....... . + ....+++.+|+.+|+.
T Consensus 137 ~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~-~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~ 215 (357)
T 2fna_A 137 DNVIIVLDEAQELVKLRGVNLLPALAYAYD-NLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAI 215 (357)
T ss_dssp SCEEEEEETGGGGGGCTTCCCHHHHHHHHH-HCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHH
T ss_pred CCeEEEEECHHHhhccCchhHHHHHHHHHH-cCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHH
Confidence 4899999999651 222221111 1246789999998653221 1 1 1358999999999999
Q ss_pred HHHHHHhcc-CCCCChhHHHHHHHHHHHcCCChhHHHHHHhhhcC-CCHHHHHHH-HHHhhhcCChhHHHHHH-HHhc--
Q 005709 83 ELFCRKAFR-QNNRSPDLLELSEEVAHYANGNPLALQVLGSSLYQ-KSKEQWKDK-LRKLKLITDPNIYKVLK-ISYD-- 156 (681)
Q Consensus 83 ~Lf~~~af~-~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~L~~-k~~~~w~~~-l~~l~~~~~~~i~~~l~-~sy~-- 156 (681)
+++...+-. +.... .. .+|...++|.|+++..++..+.. .+..+|... .+... ..+...+. +.++
T Consensus 216 ~~l~~~~~~~~~~~~-~~----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~ 286 (357)
T 2fna_A 216 EFLRRGFQEADIDFK-DY----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK----KLILKEFENFLHGRE 286 (357)
T ss_dssp HHHHHHHHHHTCCCC-CH----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----HHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHcCCCCC-cH----HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH----HHHHHHHHHHhhccc
Confidence 999875421 11222 21 78899999999999999887643 344444221 11111 11111222 2221
Q ss_pred CCCHHHHHHHhhhcccCCCCCHHHHHHh---hcC--C--CchhhhHHHHhhccceeEeCCeEee-hHHHHHH
Q 005709 157 GLNWEEKEIFLDVACFFKGEDVDFVTRV---QDD--P--TSMHNGLNTLVEMSLITISANRLQM-HDILQEL 220 (681)
Q Consensus 157 ~L~~~~k~cfl~~a~Fp~~~~~~~~~~i---~~~--~--~~~~~~~~~L~~~sli~~~~~~~~m-Hdll~~~ 220 (681)
.|++..+..+..+|+- . ....+... ..| . .....+++.|+++++|...++.|++ |++++++
T Consensus 287 ~l~~~~~~~l~~la~g--~-~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~~~y~f~~~~~~~~ 355 (357)
T 2fna_A 287 IARKRYLNIMRTLSKC--G-KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLA 355 (357)
T ss_dssp GGHHHHHHHHHHHTTC--B-CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHH
T ss_pred cccHHHHHHHHHHHcC--C-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecCCEEEecCHHHHHh
Confidence 6888999999999982 2 44443322 123 2 3446779999999999887777774 6788765
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.29 E-value=3.5e-08 Score=104.85 Aligned_cols=160 Identities=16% Similarity=0.055 Sum_probs=74.0
Q ss_pred CCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCC--CCCCC-CCCCceEEEcCCCCccccc-ccc
Q 005709 281 MSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKT--LPFSF-EPNYLIELNLPYSKVEQIW-IGE 356 (681)
Q Consensus 281 l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~--lp~~~-~l~~L~~L~L~~n~l~~lp-~~~ 356 (681)
+++|+.|++++|.+.. .....+...+...+.+|+.|++++|.++. +.... .+.+|++|+|++|.++... ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~----~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L 146 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTP----VKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDL 146 (372)
T ss_dssp HTTCCEEECTTSCCCH----HHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHH
T ss_pred HhhCCEEEecCCCCCH----HHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHH
Confidence 4567777777665410 00011222222223467777777776653 11112 3456777777777665321 111
Q ss_pred cccccccccceecccCCcccCCC-CCCCCCcEEEcccCCCcc-----cCccccCCCccceeccccccccCcC-----CC-
Q 005709 357 KKAFKLKFINLYNSRYLTRLPEF-SEIPNLERINLSGSELER-----LPATIKQFSQLRYLYLRNCNMLQSL-----PE- 424 (681)
Q Consensus 357 ~~l~~L~~L~~L~l~~l~~lp~~-~~l~~L~~L~L~~n~l~~-----lp~~i~~L~~L~~L~L~~c~~l~~l-----p~- 424 (681)
... + ...++|++|+|++|.++. ++..+..+++|++|+|++|. ++.. +.
T Consensus 147 ~~~-------------------L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~ 206 (372)
T 3un9_A 147 RDL-------------------LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQ 206 (372)
T ss_dssp HHH-------------------HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHH
T ss_pred HHH-------------------HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHH
Confidence 100 0 123445555555555542 33334455555555555533 2211 10
Q ss_pred --CCCCCCEEeccCCCCCc----ccCCCC---CCccEEecccccccccc
Q 005709 425 --LPLLLSHLDASNCKRLQ----SLPEIS---SCLEELDISILEKLSKT 464 (681)
Q Consensus 425 --~l~~L~~L~l~~c~~l~----~lp~~~---~~L~~L~l~~n~l~~~~ 464 (681)
..++|+.|++++|..-. .++..+ .+|++|+|++|.+....
T Consensus 207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g 255 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEG 255 (372)
T ss_dssp GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHH
Confidence 13456666666643211 122222 26777777777765433
No 151
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.27 E-value=1.8e-05 Score=82.71 Aligned_cols=197 Identities=16% Similarity=0.158 Sum_probs=116.6
Q ss_pred HHHHHHhCC-CeEEEEEECcCh----------h-HHHhhcCCCCCCCCcEEEEEeCCchhhhcc------------CCce
Q 005709 14 PNIKKRLQQ-RKVLIVLDDVDD----------N-SKNFAGGLELFSPGSRIIITTRDKRLLDKR------------RVEN 69 (681)
Q Consensus 14 ~~i~~~L~~-kr~LiVLDdv~~----------~-~~~l~~~~~~~~~gSrIivTTR~~~v~~~~------------~~~~ 69 (681)
+.+.+..+. ++++||+||++. . +..+....+. .++.++|+|++...+.... ....
T Consensus 118 ~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~ 196 (350)
T 2qen_A 118 RELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAG 196 (350)
T ss_dssp HHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCE
T ss_pred HHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccc
Confidence 344444432 389999999965 1 2222221111 2577899999876532211 1234
Q ss_pred EEEcCCCCHHHHHHHHHHHhccCC-CCChhHHHHHHHHHHHcCCChhHHHHHHhhhcC-CCHHHHHH-HHHHhhhcCChh
Q 005709 70 VYEVKGLKHNSALELFCRKAFRQN-NRSPDLLELSEEVAHYANGNPLALQVLGSSLYQ-KSKEQWKD-KLRKLKLITDPN 146 (681)
Q Consensus 70 ~~~l~~L~~~e~~~Lf~~~af~~~-~~~~~~~~~~~~i~~~c~GlPLai~~~g~~L~~-k~~~~w~~-~l~~l~~~~~~~ 146 (681)
.+++.+|+.+|+.+++....-... ... .+.+.++...++|.|+++..++..+.. .+..++.. +.+........+
T Consensus 197 ~i~l~pl~~~e~~~~l~~~~~~~~~~~~---~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (350)
T 2qen_A 197 EVLVKPFDKDTSVEFLKRGFREVNLDVP---ENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGE 273 (350)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred eeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHH
Confidence 899999999999999987542211 112 346788999999999999999876432 33322211 111111100011
Q ss_pred HHHHHHHHhcCCCHHHHHHHhhhcccCCCCCHHHHHHhh---c-CC--CchhhhHHHHhhccceeEeCCeEee-hHHHHH
Q 005709 147 IYKVLKISYDGLNWEEKEIFLDVACFFKGEDVDFVTRVQ---D-DP--TSMHNGLNTLVEMSLITISANRLQM-HDILQE 219 (681)
Q Consensus 147 i~~~l~~sy~~L~~~~k~cfl~~a~Fp~~~~~~~~~~i~---~-~~--~~~~~~~~~L~~~sli~~~~~~~~m-Hdll~~ 219 (681)
+ -.+.+ . ++..+..+..+|+ .......+...+ . +. .....+++.|++.++|...++.|++ |.++++
T Consensus 274 l---~~l~~-~-~~~~~~~l~~la~--g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~y~~~~p~~~~ 346 (350)
T 2qen_A 274 L---EELRR-R-SPRYVDILRAIAL--GYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVAT 346 (350)
T ss_dssp H---HHHHH-H-CHHHHHHHHHHHT--TCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEESSHHHHH
T ss_pred H---HHHHh-C-ChhHHHHHHHHHh--CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEecCCEEEEecHHHHH
Confidence 1 11222 2 7888999999998 223333333322 1 33 3346779999999999987777776 567776
Q ss_pred HH
Q 005709 220 LG 221 (681)
Q Consensus 220 ~~ 221 (681)
+.
T Consensus 347 ~~ 348 (350)
T 2qen_A 347 VL 348 (350)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.19 E-value=9.8e-08 Score=101.42 Aligned_cols=124 Identities=14% Similarity=0.019 Sum_probs=73.1
Q ss_pred CCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCC-----CCC--CCCCceEEEcCCCCcccc--
Q 005709 282 SSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLP-----FSF--EPNYLIELNLPYSKVEQI-- 352 (681)
Q Consensus 282 ~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp-----~~~--~l~~L~~L~L~~n~l~~l-- 352 (681)
++|+.|+|++|.+ ...-...+....++|+.|++++|.++... ..+ ...+|++|+|++|.++..
T Consensus 101 ~~L~~L~Ls~n~l--------~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~ 172 (372)
T 3un9_A 101 HALDEVNLASCQL--------DPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGV 172 (372)
T ss_dssp SCEEEEECTTCCC--------CHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHH
T ss_pred CCceEEEecCCCC--------CHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHH
Confidence 7999999998875 22111222222257999999999986422 112 357899999999998742
Q ss_pred ---cccccccccccccceecccCCcccCCCCCCCCCcEEEcccCCCcc-----cCccccCCCccceeccccccccCcC--
Q 005709 353 ---WIGEKKAFKLKFINLYNSRYLTRLPEFSEIPNLERINLSGSELER-----LPATIKQFSQLRYLYLRNCNMLQSL-- 422 (681)
Q Consensus 353 ---p~~~~~l~~L~~L~~L~l~~l~~lp~~~~l~~L~~L~L~~n~l~~-----lp~~i~~L~~L~~L~L~~c~~l~~l-- 422 (681)
+..+. ..++|++|+|++|.++. ++..+...++|+.|+|++|. ++..
T Consensus 173 ~~l~~~L~-----------------------~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~ 228 (372)
T 3un9_A 173 AVLMEGLA-----------------------GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAA 228 (372)
T ss_dssp HHHHHHHH-----------------------TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHH
T ss_pred HHHHHHHh-----------------------cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHH
Confidence 22222 34456666666665552 23445555566666666643 2221
Q ss_pred ---CCC---CCCCCEEeccCC
Q 005709 423 ---PEL---PLLLSHLDASNC 437 (681)
Q Consensus 423 ---p~~---l~~L~~L~l~~c 437 (681)
+.. .++|++|++++|
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTS
T ss_pred HHHHHHHHhCCCCCEEeccCC
Confidence 111 356677777665
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.94 E-value=1.9e-06 Score=90.91 Aligned_cols=101 Identities=17% Similarity=0.146 Sum_probs=56.4
Q ss_pred CCCCcEEEcccCCCcc-cCcccc--CCCccceeccccccc-------cCc----CC-CCCCCCCEEeccCCCCCccc---
Q 005709 382 IPNLERINLSGSELER-LPATIK--QFSQLRYLYLRNCNM-------LQS----LP-ELPLLLSHLDASNCKRLQSL--- 443 (681)
Q Consensus 382 l~~L~~L~L~~n~l~~-lp~~i~--~L~~L~~L~L~~c~~-------l~~----lp-~~l~~L~~L~l~~c~~l~~l--- 443 (681)
+++|+.|+|.++.+.. ....++ .+++|+.|+|+.+.. +.. +. ..+++|++|++++|......
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence 5566666666544431 111122 456666666542110 100 11 12567888888776533211
Q ss_pred -C--CCCCCccEEecccccccc-----cccccccCCCCCcEEEccCCc
Q 005709 444 -P--EISSCLEELDISILEKLS-----KTTFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 444 -p--~~~~~L~~L~l~~n~l~~-----~~~~~l~~l~~L~~L~l~~c~ 483 (681)
. ..+.+|+.|+|+.|.+.. ++.. +.++++|+.|++++|.
T Consensus 272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~-L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 272 FLESDILPQLETMDISAGVLTDEGARLLLDH-VDKIKHLKFINMKYNY 318 (362)
T ss_dssp HHHCSSGGGCSEEECCSSCCBHHHHHHHHTT-HHHHTTCSEEECCSBB
T ss_pred HHhCccCCCCCEEECCCCCCChHHHHHHHhh-cccCCcceEEECCCCc
Confidence 1 123489999999888875 3333 5677899999887764
No 154
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.90 E-value=1.6e-05 Score=85.34 Aligned_cols=186 Identities=13% Similarity=0.097 Sum_probs=108.2
Q ss_pred hHHHHHHhC--CCeEEEEEECcChh----------HHHhhcCCCCC---C--CCcEEEEEeCCchhhhcc---------C
Q 005709 13 TPNIKKRLQ--QRKVLIVLDDVDDN----------SKNFAGGLELF---S--PGSRIIITTRDKRLLDKR---------R 66 (681)
Q Consensus 13 ~~~i~~~L~--~kr~LiVLDdv~~~----------~~~l~~~~~~~---~--~gSrIivTTR~~~v~~~~---------~ 66 (681)
...+.+.+. +++++|||||++.. +..+...+... + ..-.||+|||..++.... .
T Consensus 126 ~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~ 205 (412)
T 1w5s_A 126 LKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQ 205 (412)
T ss_dssp HHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTT
T ss_pred HHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhh
Confidence 445556664 78999999999762 33322222111 2 334488898866543211 1
Q ss_pred CceEEEcCCCCHHHHHHHHHHHh---ccCCCCChhHHHHHHHHHHHcC------CChhHHHHHHhhhc------C---CC
Q 005709 67 VENVYEVKGLKHNSALELFCRKA---FRQNNRSPDLLELSEEVAHYAN------GNPLALQVLGSSLY------Q---KS 128 (681)
Q Consensus 67 ~~~~~~l~~L~~~e~~~Lf~~~a---f~~~~~~~~~~~~~~~i~~~c~------GlPLai~~~g~~L~------~---k~ 128 (681)
....+++++++.++++++|...+ +...... .+....+++.++ |.|..+..+..... + -+
T Consensus 206 ~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~ 282 (412)
T 1w5s_A 206 IGFKLHLPAYKSRELYTILEQRAELGLRDTVWE---PRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLS 282 (412)
T ss_dssp CSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCC---HHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred cCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 12349999999999999997654 3322222 345678888899 99976655543211 1 13
Q ss_pred HHHHHHHHHHhhhcCChhHHHHHHHHhcCCCHHHHHHHhhhcccCC----CCCHHH----HHHhh-c--CC-----Cchh
Q 005709 129 KEQWKDKLRKLKLITDPNIYKVLKISYDGLNWEEKEIFLDVACFFK----GEDVDF----VTRVQ-D--DP-----TSMH 192 (681)
Q Consensus 129 ~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~Fp~----~~~~~~----~~~i~-~--~~-----~~~~ 192 (681)
.+.+..++..... ...+.-++..||.+.+.++..+|.+++ ...... ...++ + |. ....
T Consensus 283 ~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (412)
T 1w5s_A 283 EDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVKPRGYTQYH 356 (412)
T ss_dssp HHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHH
T ss_pred HHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCCCCCHHHHH
Confidence 4444444433210 233455678999999999999997542 122221 11233 1 21 2234
Q ss_pred hhHHHHhhccceeEe
Q 005709 193 NGLNTLVEMSLITIS 207 (681)
Q Consensus 193 ~~~~~L~~~sli~~~ 207 (681)
.+++.|++.++|...
T Consensus 357 ~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 357 IYLKHLTSLGLVDAK 371 (412)
T ss_dssp HHHHHHHHTTSEEEE
T ss_pred HHHHHHHhCCCEEee
Confidence 668999999999875
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.81 E-value=1.1e-05 Score=85.03 Aligned_cols=95 Identities=9% Similarity=-0.038 Sum_probs=50.4
Q ss_pred CCCcEEEEEeecCCCc--c----cccCHHHhcCCCCCceEEEeCCCCCCCccc-ccccccCccccccccCccEEEecCCC
Q 005709 254 GTDAIEGIFFDLSKIN--Y----LHLSPQAFANMSSLTLLKFYMPECNGVPIM-SSKLHLNQDLEYLPKKLRYLHWHEYP 326 (681)
Q Consensus 254 ~~~~v~~l~l~~~~~~--~----~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~~l~~l~~~L~~L~l~~~~ 326 (681)
....|+.+.++.-... . +.....+..++++|+.|.+..+........ .....+..-+..+ ++|+.|++++|.
T Consensus 105 ~~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~-P~L~~L~L~g~~ 183 (362)
T 2ra8_A 105 KLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAM-PLLNNLKIKGTN 183 (362)
T ss_dssp TGGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTC-TTCCEEEEECCB
T ss_pred CchhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcC-CCCcEEEEeCCC
Confidence 3445667776643311 0 001123355788999999875432100000 0011122223333 589999998874
Q ss_pred CCCCCCCCCCCCceEEEcCCCCcc
Q 005709 327 LKTLPFSFEPNYLIELNLPYSKVE 350 (681)
Q Consensus 327 l~~lp~~~~l~~L~~L~L~~n~l~ 350 (681)
-..+|. +.+++|+.|+|..+.+.
T Consensus 184 ~l~l~~-~~~~~L~~L~L~~~~l~ 206 (362)
T 2ra8_A 184 NLSIGK-KPRPNLKSLEIISGGLP 206 (362)
T ss_dssp TCBCCS-CBCTTCSEEEEECSBCC
T ss_pred Cceecc-ccCCCCcEEEEecCCCC
Confidence 234444 45778888888877664
No 156
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.44 E-value=0.003 Score=66.59 Aligned_cols=185 Identities=14% Similarity=0.102 Sum_probs=114.4
Q ss_pred chHHHHHHhCCCeEEEEEECcChh-----HHH-hhcCCCCCCCCcEEEEEeCCchhhhcc------CCceEEEcCCCCHH
Q 005709 12 ITPNIKKRLQQRKVLIVLDDVDDN-----SKN-FAGGLELFSPGSRIIITTRDKRLLDKR------RVENVYEVKGLKHN 79 (681)
Q Consensus 12 ~~~~i~~~L~~kr~LiVLDdv~~~-----~~~-l~~~~~~~~~gSrIivTTR~~~v~~~~------~~~~~~~l~~L~~~ 79 (681)
..+.+.+.++.++.+|||||++.. .+. +..-..+. .+.+||+||+.......+ .....+++++++.+
T Consensus 122 ~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~ 200 (384)
T 2qby_B 122 YIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAE 200 (384)
T ss_dssp HHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHH
T ss_pred HHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHH
Confidence 455667778777779999999775 111 11112222 778899999976432211 11238999999999
Q ss_pred HHHHHHHHHh---ccCCCCChhHHHHHHHHHHHcC---CChh-HHHHHHhhh--c----CCCHHHHHHHHHHhhhcCChh
Q 005709 80 SALELFCRKA---FRQNNRSPDLLELSEEVAHYAN---GNPL-ALQVLGSSL--Y----QKSKEQWKDKLRKLKLITDPN 146 (681)
Q Consensus 80 e~~~Lf~~~a---f~~~~~~~~~~~~~~~i~~~c~---GlPL-ai~~~g~~L--~----~k~~~~w~~~l~~l~~~~~~~ 146 (681)
+..+++...+ |......+ +....++++++ |.|. |+..+.... . .-+.+.++.+++....
T Consensus 201 ~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~~----- 272 (384)
T 2qby_B 201 QLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYEQ----- 272 (384)
T ss_dssp HHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhc-----
Confidence 9999999885 33233333 33456666776 8877 433333222 1 2477888887776542
Q ss_pred HHHHHHHHhcCCCHHHHHHHhhhcccCCCCCHH-HHHHhhcCC-------CchhhhHHHHhhccceeEe
Q 005709 147 IYKVLKISYDGLNWEEKEIFLDVACFFKGEDVD-FVTRVQDDP-------TSMHNGLNTLVEMSLITIS 207 (681)
Q Consensus 147 i~~~l~~sy~~L~~~~k~cfl~~a~Fp~~~~~~-~~~~i~~~~-------~~~~~~~~~L~~~sli~~~ 207 (681)
..+..++..|+.++|..+..++....+.++. ....+++.. ......++.|.++++|+..
T Consensus 273 --~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 273 --ERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp --HHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred --chHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 4566788899999888888777621212222 223333321 2235558889999999874
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.43 E-value=0.001 Score=70.71 Aligned_cols=105 Identities=21% Similarity=0.134 Sum_probs=52.0
Q ss_pred cCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCC-C-CCCCceEEEcCCCCcc
Q 005709 273 LSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFS-F-EPNYLIELNLPYSKVE 350 (681)
Q Consensus 273 ~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~l~ 350 (681)
+...+|.++++|+.+.+..+ ...++.....-..+|+.+.+..+ ++.++.. | +...|+.+.+..+..
T Consensus 153 i~~~aF~~c~~L~~i~l~~~----------~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~- 220 (394)
T 4fs7_A 153 IGDEAFATCESLEYVSLPDS----------METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY- 220 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTT----------CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC-
T ss_pred cchhhhcccCCCcEEecCCc----------cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCce-
Confidence 44567888888888877643 12344333333356666666544 4444443 3 555566555554322
Q ss_pred cccccccccccccccceecc-cCCcccCC--CCCCCCCcEEEccc
Q 005709 351 QIWIGEKKAFKLKFINLYNS-RYLTRLPE--FSEIPNLERINLSG 392 (681)
Q Consensus 351 ~lp~~~~~l~~L~~L~~L~l-~~l~~lp~--~~~l~~L~~L~L~~ 392 (681)
.+...... ..+|+.+.+ ..+..+.. +.++.+|+.+.+..
T Consensus 221 ~i~~~~~~---~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~ 262 (394)
T 4fs7_A 221 YLGDFALS---KTGVKNIIIPDSFTELGKSVFYGCTDLESISIQN 262 (394)
T ss_dssp EECTTTTT---TCCCCEEEECTTCCEECSSTTTTCSSCCEEEECC
T ss_pred Eeehhhcc---cCCCceEEECCCceecccccccccccceeEEcCC
Confidence 12222222 344444444 33444442 45555555555543
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.37 E-value=0.0011 Score=70.47 Aligned_cols=189 Identities=12% Similarity=0.028 Sum_probs=104.6
Q ss_pred cccCHHHhcCCCCCceEEEeCCCCCCCcccccccccCccccccccCccEEEecCCCCCCCCCC-CCCCCceEEEcCCCCc
Q 005709 271 LHLSPQAFANMSSLTLLKFYMPECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKTLPFS-FEPNYLIELNLPYSKV 349 (681)
Q Consensus 271 ~~~~~~~f~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~~l~~L~~L~L~~n~l 349 (681)
..+...+|.++.+|+.+.+..+- ..++.....-...|+.+.+..+. ..+... +...+|+.+.+..+ +
T Consensus 174 ~~I~~~~F~~c~~L~~i~l~~~~----------~~I~~~~F~~~~~L~~i~~~~~~-~~i~~~~~~~~~l~~i~ip~~-~ 241 (394)
T 4fs7_A 174 ETLHNGLFSGCGKLKSIKLPRNL----------KIIRDYCFAECILLENMEFPNSL-YYLGDFALSKTGVKNIIIPDS-F 241 (394)
T ss_dssp CEECTTTTTTCTTCCBCCCCTTC----------CEECTTTTTTCTTCCBCCCCTTC-CEECTTTTTTCCCCEEEECTT-C
T ss_pred ceeccccccCCCCceEEEcCCCc----------eEeCchhhccccccceeecCCCc-eEeehhhcccCCCceEEECCC-c
Confidence 34667789999999988886431 22222222222445555444332 122222 24456666666543 3
Q ss_pred ccccc-cccccccccccceecc-cCCcccCC--CCCCCCCcEEEcccCCCcccCc-cccCCCccceeccccccccCcCCC
Q 005709 350 EQIWI-GEKKAFKLKFINLYNS-RYLTRLPE--FSEIPNLERINLSGSELERLPA-TIKQFSQLRYLYLRNCNMLQSLPE 424 (681)
Q Consensus 350 ~~lp~-~~~~l~~L~~L~~L~l-~~l~~lp~--~~~l~~L~~L~L~~n~l~~lp~-~i~~L~~L~~L~L~~c~~l~~lp~ 424 (681)
+.+.. .+.. +..|+.+.+ .....++. |..+..|+.+.+..+. ++. .+..+.+|+.+.+.+ .+..++.
T Consensus 242 ~~i~~~~f~~---~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~--~i~~I~~ 313 (394)
T 4fs7_A 242 TELGKSVFYG---CTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLD--SVKFIGE 313 (394)
T ss_dssp CEECSSTTTT---CSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECT--TCCEECT
T ss_pred eecccccccc---cccceeEEcCCCcceeeccccccccccceeccCcee---ecccccccccccccccccc--ccceech
Confidence 33322 2333 566666666 44444543 6666666666655332 222 255666666666653 2555554
Q ss_pred C----CCCCCEEeccCCCCCcccCCCCC----CccEEecccccccccccccccCCCCCcEEEccCC
Q 005709 425 L----PLLLSHLDASNCKRLQSLPEISS----CLEELDISILEKLSKTTFPIKHGCSLMQFEFQNC 482 (681)
Q Consensus 425 ~----l~~L~~L~l~~c~~l~~lp~~~~----~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c 482 (681)
. +++|+.+.+.. .+..++.... +|+.+.+..+ ++.+...+|.++++|+.+.+..+
T Consensus 314 ~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 314 EAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred hhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 3 45666666643 3555544322 6777777655 77777777888888888887643
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.35 E-value=7.3e-05 Score=69.62 Aligned_cols=14 Identities=7% Similarity=-0.021 Sum_probs=8.3
Q ss_pred CCceEEEcCCCCcc
Q 005709 337 NYLIELNLPYSKVE 350 (681)
Q Consensus 337 ~~L~~L~L~~n~l~ 350 (681)
.+|++||++++.|+
T Consensus 61 ~~L~~LDLs~~~It 74 (176)
T 3e4g_A 61 YKIQAIDATDSCIM 74 (176)
T ss_dssp CCEEEEEEESCCCC
T ss_pred ceEeEEeCcCCCcc
Confidence 45666666666554
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.34 E-value=3.7e-05 Score=72.80 Aligned_cols=118 Identities=12% Similarity=0.050 Sum_probs=60.3
Q ss_pred HHHhcCCCCCceEEEeCC-CCCCCcccccccccCccccccccCccEEEecCCCCCC-----CCCCC-CCCCceEEEcCCC
Q 005709 275 PQAFANMSSLTLLKFYMP-ECNGVPIMSSKLHLNQDLEYLPKKLRYLHWHEYPLKT-----LPFSF-EPNYLIELNLPYS 347 (681)
Q Consensus 275 ~~~f~~l~~L~~L~l~~n-~~~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~-----lp~~~-~l~~L~~L~L~~n 347 (681)
...+...++|+.|+|++| .+. ......+...+... ++|++|+|++|.+.. +...+ ..++|++|+|++|
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~----~~g~~~l~~~L~~~-~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIP----VPTLKACAEALKTN-TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCC----HHHHHHHHHHHTTC-CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHhcCCCCCEEEecCCCCCC----HHHHHHHHHHHHhC-CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 456677888888888876 541 00111223333333 567777777776653 22222 3455666666666
Q ss_pred CcccccccccccccccccceecccCCcccCC-CCCCCCCcEEEc--ccCCCcc-----cCccccCCCccceeccccc
Q 005709 348 KVEQIWIGEKKAFKLKFINLYNSRYLTRLPE-FSEIPNLERINL--SGSELER-----LPATIKQFSQLRYLYLRNC 416 (681)
Q Consensus 348 ~l~~lp~~~~~l~~L~~L~~L~l~~l~~lp~-~~~l~~L~~L~L--~~n~l~~-----lp~~i~~L~~L~~L~L~~c 416 (681)
.|..- +... +.. +...++|++|+| ++|.+.. +...+...++|++|+|++|
T Consensus 104 ~i~~~--g~~~-----------------l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 104 FISGS--GILA-----------------LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp CCCHH--HHHH-----------------HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred cCCHH--HHHH-----------------HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 66531 0000 010 233455666777 5666652 3333444455666666553
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.25 E-value=0.006 Score=64.75 Aligned_cols=99 Identities=14% Similarity=0.221 Sum_probs=61.5
Q ss_pred CCCCCCCcEEEcccCCCcccCc-cccCCCccceeccccccccCcCCCC----CCCCCEEeccCCCCCcccCCCCC----C
Q 005709 379 FSEIPNLERINLSGSELERLPA-TIKQFSQLRYLYLRNCNMLQSLPEL----PLLLSHLDASNCKRLQSLPEISS----C 449 (681)
Q Consensus 379 ~~~l~~L~~L~L~~n~l~~lp~-~i~~L~~L~~L~L~~c~~l~~lp~~----l~~L~~L~l~~c~~l~~lp~~~~----~ 449 (681)
|.++.+|+.+.+..+ +..+.. .+.++++|+.+.+. +.+..++.. ..+|+.+.+.. .+..+..... +
T Consensus 261 F~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~--~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 261 FDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS--SRITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC--TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTT
T ss_pred eeecccccEEecccc-cceecCcccccccccccccCC--CcccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCC
Confidence 566666776666532 233333 36667777777765 345666654 56777777754 3555554322 6
Q ss_pred ccEEecccccccccccccccCCCCCcEEEccCCc
Q 005709 450 LEELDISILEKLSKTTFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 450 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~ 483 (681)
|+.+.+.. .++.+....|.++++|+.+.+.++.
T Consensus 336 L~~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 336 LERIAIPS-SVTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CCEEEECT-TCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CCEEEECc-ccCEEhHhHhhCCCCCCEEEECCce
Confidence 77777753 3677777778888888888777643
No 162
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.22 E-value=0.00022 Score=71.39 Aligned_cols=43 Identities=28% Similarity=0.508 Sum_probs=21.8
Q ss_pred CCCCCCcEEEcccCCCcccCccccCCC--ccceeccccccccCcCC
Q 005709 380 SEIPNLERINLSGSELERLPATIKQFS--QLRYLYLRNCNMLQSLP 423 (681)
Q Consensus 380 ~~l~~L~~L~L~~n~l~~lp~~i~~L~--~L~~L~L~~c~~l~~lp 423 (681)
+.+++|+.|+|++|.++.+ ..+..+. +|++|+|++|..-+.+|
T Consensus 193 ~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 193 QKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccC
Confidence 3455666666666666554 2233333 55555555544333344
No 163
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.17 E-value=0.00011 Score=68.32 Aligned_cols=86 Identities=14% Similarity=0.237 Sum_probs=52.8
Q ss_pred CCCcEEEcccCCCccc-CccccCCCccceeccccccccCc-----CCCC---CCCCCEEeccCCCCCcccCCCCCCccEE
Q 005709 383 PNLERINLSGSELERL-PATIKQFSQLRYLYLRNCNMLQS-----LPEL---PLLLSHLDASNCKRLQSLPEISSCLEEL 453 (681)
Q Consensus 383 ~~L~~L~L~~n~l~~l-p~~i~~L~~L~~L~L~~c~~l~~-----lp~~---l~~L~~L~l~~c~~l~~lp~~~~~L~~L 453 (681)
.+|+.||++++.++.. -..+..+++|+.|+|++|..++. +... .++|++|++++|..
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~-------------- 126 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGN-------------- 126 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTT--------------
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCc--------------
Confidence 4689999996667632 23466777888888887765543 1110 12355555555543
Q ss_pred ecccccccccccccccCCCCCcEEEccCCcccccc
Q 005709 454 DISILEKLSKTTFPIKHGCSLMQFEFQNCWELKEN 488 (681)
Q Consensus 454 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~~L~l~ 488 (681)
++...-..+.++++|++|++++|+.+.-.
T Consensus 127 ------ITD~Gl~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 127 ------VTDKGIIALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp ------CCHHHHHHGGGCTTCCEEEEESCTTCCCH
T ss_pred ------CCHHHHHHHhcCCCCCEEECCCCCCCCch
Confidence 33222222667899999999999876643
No 164
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.15 E-value=0.0014 Score=63.86 Aligned_cols=101 Identities=14% Similarity=0.045 Sum_probs=70.4
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCCchhh-hcc-CCceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRDKRLL-DKR-RVENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~~~v~-~~~-~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
+++.+||+||++.. ++.+...+.....+.++|+||+..... ... .-...+++++++.+|..+++...+......
T Consensus 125 ~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~ 204 (250)
T 1njg_A 125 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 204 (250)
T ss_dssp SSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC
T ss_pred CCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC
Confidence 46799999999763 555544444445678899999776422 111 123589999999999999999887543321
Q ss_pred ChhHHHHHHHHHHHcCCChhHHHHHHhhh
Q 005709 96 SPDLLELSEEVAHYANGNPLALQVLGSSL 124 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPLai~~~g~~L 124 (681)
.+ .+....++++|+|.|..+..+...+
T Consensus 205 ~~--~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 205 HE--PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp BC--HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CC--HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11 3456789999999999988776543
No 165
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.99 E-value=0.018 Score=60.50 Aligned_cols=76 Identities=9% Similarity=0.076 Sum_probs=47.5
Q ss_pred ccCCCccceeccccccccCcCCCC----CCCCCEEeccCCCCCcccCCCCC----CccEEecccccccccccccccCCCC
Q 005709 402 IKQFSQLRYLYLRNCNMLQSLPEL----PLLLSHLDASNCKRLQSLPEISS----CLEELDISILEKLSKTTFPIKHGCS 473 (681)
Q Consensus 402 i~~L~~L~~L~L~~c~~l~~lp~~----l~~L~~L~l~~c~~l~~lp~~~~----~L~~L~l~~n~l~~~~~~~l~~l~~ 473 (681)
+.++..|+.+.+.. .+..++.. ..+|+.+.+.. .+..++.... +|+.+.+.++.++.++...|.++.+
T Consensus 236 f~~~~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~ 311 (379)
T 4h09_A 236 FYGMKALDEIAIPK--NVTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK 311 (379)
T ss_dssp TTTCSSCCEEEECT--TCCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred ccCCccceEEEcCC--CccEeCccccceeehhccccccc--cceeccccccccccccccccccccccceehhhhhcCCCC
Confidence 34445555555543 13344332 45566666643 3555554432 7888888888888888877888888
Q ss_pred CcEEEccC
Q 005709 474 LMQFEFQN 481 (681)
Q Consensus 474 L~~L~l~~ 481 (681)
|+.+.|.+
T Consensus 312 L~~i~lp~ 319 (379)
T 4h09_A 312 LSSVTLPT 319 (379)
T ss_dssp CCEEECCT
T ss_pred CCEEEcCc
Confidence 88888854
No 166
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.98 E-value=0.00047 Score=68.96 Aligned_cols=77 Identities=22% Similarity=0.179 Sum_probs=45.3
Q ss_pred cCccEEEecCCCCCCCC---CCC-CCCCceEEEcCCCCcccccccccccccccccceecccCCcccCCCCCCCCCcEEEc
Q 005709 315 KKLRYLHWHEYPLKTLP---FSF-EPNYLIELNLPYSKVEQIWIGEKKAFKLKFINLYNSRYLTRLPEFSEIPNLERINL 390 (681)
Q Consensus 315 ~~L~~L~l~~~~l~~lp---~~~-~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~~L~l~~l~~lp~~~~l~~L~~L~L 390 (681)
++|+.|+|++|.++.++ ..+ .+++|+.|+|++|.|+.+ ..+.. +..+ +|++|+|
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~--------------------l~~l-~L~~L~L 227 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDK--------------------IKGL-KLEELWL 227 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGG--------------------GTTS-CCSEEEC
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhh--------------------cccC-CcceEEc
Confidence 45666666666655543 223 456666666666666544 11221 3334 7899999
Q ss_pred ccCCCcc-cCc-------cccCCCccceecc
Q 005709 391 SGSELER-LPA-------TIKQFSQLRYLYL 413 (681)
Q Consensus 391 ~~n~l~~-lp~-------~i~~L~~L~~L~L 413 (681)
++|.+.. +|. -+..+++|+.||=
T Consensus 228 ~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 228 DGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp TTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred cCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 9888873 442 2567777777763
No 167
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.71 E-value=0.024 Score=60.05 Aligned_cols=53 Identities=19% Similarity=0.161 Sum_probs=32.6
Q ss_pred CCCCCEEeccCCCCCcccCCCCC----CccEEecccccccccccccccCCCCCcEEEccC
Q 005709 426 PLLLSHLDASNCKRLQSLPEISS----CLEELDISILEKLSKTTFPIKHGCSLMQFEFQN 481 (681)
Q Consensus 426 l~~L~~L~l~~c~~l~~lp~~~~----~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 481 (681)
.++|+.+.+.. .+..++.... +|+.+.+.. .++.+....|.++++|+.+.|.+
T Consensus 287 c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C~~L~~i~ip~ 343 (394)
T 4gt6_A 287 CPALQDIEFSS--RITELPESVFAGCISLKSIDIPE-GITQILDDAFAGCEQLERIAIPS 343 (394)
T ss_dssp CTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEEECT
T ss_pred ccccccccCCC--cccccCceeecCCCCcCEEEeCC-cccEehHhHhhCCCCCCEEEECc
Confidence 45566666642 4555555433 677777754 36666666677777777777743
No 168
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.67 E-value=0.00042 Score=65.43 Aligned_cols=102 Identities=18% Similarity=0.247 Sum_probs=61.6
Q ss_pred CCCCCCCcEEEcccC-CCcc-----cCccccCCCccceeccccccccCc-----CCCC---CCCCCEEeccCCCCCcc--
Q 005709 379 FSEIPNLERINLSGS-ELER-----LPATIKQFSQLRYLYLRNCNMLQS-----LPEL---PLLLSHLDASNCKRLQS-- 442 (681)
Q Consensus 379 ~~~l~~L~~L~L~~n-~l~~-----lp~~i~~L~~L~~L~L~~c~~l~~-----lp~~---l~~L~~L~l~~c~~l~~-- 442 (681)
+...++|++|+|++| .+.. +...+...++|++|+|++|. ++. +... .++|++|++++|. ++.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g 109 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSG 109 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHH
Confidence 345566777777766 6652 34445566677777777754 322 1111 4567777777753 322
Q ss_pred ---cCCCCC---CccEEec--cccccccc-----ccccccCCCCCcEEEccCCc
Q 005709 443 ---LPEISS---CLEELDI--SILEKLSK-----TTFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 443 ---lp~~~~---~L~~L~l--~~n~l~~~-----~~~~l~~l~~L~~L~l~~c~ 483 (681)
+...+. +|++|+| ++|.+... ... +...++|++|++++|.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~-L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM-LEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH-HHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHH-HHhCCCcCEEeccCCC
Confidence 233333 7888998 77887642 222 5566889999887765
No 169
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.34 E-value=0.018 Score=60.45 Aligned_cols=115 Identities=14% Similarity=0.202 Sum_probs=62.4
Q ss_pred ccccceecc-cCCcccCC--CCCCCCCcEEEcccCCCcccCcc-ccCCCccceeccccccccCcCCCC----CCCCCEEe
Q 005709 362 LKFINLYNS-RYLTRLPE--FSEIPNLERINLSGSELERLPAT-IKQFSQLRYLYLRNCNMLQSLPEL----PLLLSHLD 433 (681)
Q Consensus 362 L~~L~~L~l-~~l~~lp~--~~~l~~L~~L~L~~n~l~~lp~~-i~~L~~L~~L~L~~c~~l~~lp~~----l~~L~~L~ 433 (681)
..+|+.+.+ ..+..++. +.++.+|+.+.+..+ ++.++.. +.++.+|+.+.+.. .+..++.. +++|+.+.
T Consensus 216 ~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~ 292 (379)
T 4h09_A 216 GKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVV 292 (379)
T ss_dssp CSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEE
T ss_pred ccccceeeeccceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc--cceecccccccccccccccc
Confidence 444555555 44444443 555556666555432 4444332 55555566555543 24444433 45566666
Q ss_pred ccCCCCCcccCCCCC----CccEEecccccccccccccccCCCCCcEEEccC
Q 005709 434 ASNCKRLQSLPEISS----CLEELDISILEKLSKTTFPIKHGCSLMQFEFQN 481 (681)
Q Consensus 434 l~~c~~l~~lp~~~~----~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 481 (681)
+.+ +.+..++.... +|+.+.|.. .++.+...+|.++++|+.+.+..
T Consensus 293 l~~-~~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 293 MDN-SAIETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp ECC-TTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCCCCCCT
T ss_pred ccc-cccceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCCCEEEECC
Confidence 644 34455544322 677777653 36666666678888888777643
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.12 E-value=0.0077 Score=53.05 Aligned_cols=52 Identities=15% Similarity=-0.007 Sum_probs=44.3
Q ss_pred EEeccCCCCCc--ccCCCCC-CccEEecccccccccccccccCCCCCcEEEccCCc
Q 005709 431 HLDASNCKRLQ--SLPEISS-CLEELDISILEKLSKTTFPIKHGCSLMQFEFQNCW 483 (681)
Q Consensus 431 ~L~l~~c~~l~--~lp~~~~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~c~ 483 (681)
.++.++ +.+. .+|..+. +|+.|+|++|.|+.++...+..+++|+.|+|++|+
T Consensus 12 ~v~Cs~-~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGR-RGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCS-SCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCC-CCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 455555 5666 8888777 89999999999999999989999999999999876
No 171
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.11 E-value=0.046 Score=57.18 Aligned_cols=185 Identities=14% Similarity=0.072 Sum_probs=107.1
Q ss_pred hHHHHHHhC--CCeEEEEEECcChh--------HHHhhcCCCC-CCCCcEEEEEeCCchhhhccC-------CceEEEcC
Q 005709 13 TPNIKKRLQ--QRKVLIVLDDVDDN--------SKNFAGGLEL-FSPGSRIIITTRDKRLLDKRR-------VENVYEVK 74 (681)
Q Consensus 13 ~~~i~~~L~--~kr~LiVLDdv~~~--------~~~l~~~~~~-~~~gSrIivTTR~~~v~~~~~-------~~~~~~l~ 74 (681)
.+.+.+.+. +++.+||||+++.. +..+...... ...+..||+||+.......+. ....++++
T Consensus 116 ~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~ 195 (386)
T 2qby_A 116 YRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFP 195 (386)
T ss_dssp HHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEEC
T ss_pred HHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeC
Confidence 344555554 45899999999663 3333222111 134567788888775443331 12589999
Q ss_pred CCCHHHHHHHHHHHhc---cCCCCChhHHHHHHHHHHHcC---CChhHHHHHHh-hhc-----C---CCHHHHHHHHHHh
Q 005709 75 GLKHNSALELFCRKAF---RQNNRSPDLLELSEEVAHYAN---GNPLALQVLGS-SLY-----Q---KSKEQWKDKLRKL 139 (681)
Q Consensus 75 ~L~~~e~~~Lf~~~af---~~~~~~~~~~~~~~~i~~~c~---GlPLai~~~g~-~L~-----~---k~~~~w~~~l~~l 139 (681)
+++.++..+++...+- ...... .+....++++++ |.|..+..+.. ... + -+.+.++.++...
T Consensus 196 ~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 196 PYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEI 272 (386)
T ss_dssp CCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 9999999999998642 222222 334555666666 99884443322 211 1 2566666666654
Q ss_pred hhcCChhHHHHHHHHhcCCCHHHHHHHhhhcccCC-CCC---HH----HHHHhhc--CC-----CchhhhHHHHhhccce
Q 005709 140 KLITDPNIYKVLKISYDGLNWEEKEIFLDVACFFK-GED---VD----FVTRVQD--DP-----TSMHNGLNTLVEMSLI 204 (681)
Q Consensus 140 ~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~Fp~-~~~---~~----~~~~i~~--~~-----~~~~~~~~~L~~~sli 204 (681)
. ...+.-.+..++..++..+..++...+ |.. .. ....+++ |. .....+++.|.+.++|
T Consensus 273 ~-------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli 345 (386)
T 2qby_A 273 E-------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVEAVTQRRVSDIINELDMVGIL 345 (386)
T ss_dssp H-------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHTSE
T ss_pred h-------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCE
Confidence 3 235666788999999988888875433 211 21 1122322 11 1235568889999998
Q ss_pred eEe
Q 005709 205 TIS 207 (681)
Q Consensus 205 ~~~ 207 (681)
+..
T Consensus 346 ~~~ 348 (386)
T 2qby_A 346 TAK 348 (386)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 172
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.89 E-value=0.17 Score=52.81 Aligned_cols=185 Identities=14% Similarity=0.123 Sum_probs=107.8
Q ss_pred hHHHHHHh--CCCeEEEEEECcChh---------HHHhhcCCCCC--CCCcEEEEEeCCchhhhcc------CC-ceEEE
Q 005709 13 TPNIKKRL--QQRKVLIVLDDVDDN---------SKNFAGGLELF--SPGSRIIITTRDKRLLDKR------RV-ENVYE 72 (681)
Q Consensus 13 ~~~i~~~L--~~kr~LiVLDdv~~~---------~~~l~~~~~~~--~~gSrIivTTR~~~v~~~~------~~-~~~~~ 72 (681)
.+.+.+.+ .+++.+|||||++.. +..+....... ..+..+|.||+...+...+ .. ...++
T Consensus 118 ~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~ 197 (387)
T 2v1u_A 118 YERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELV 197 (387)
T ss_dssp HHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECC
T ss_pred HHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEe
Confidence 34555565 456899999999864 22222221111 3566788888876332211 11 24899
Q ss_pred cCCCCHHHHHHHHHHHh---ccCCCCChhHHHHHHHHHHHcC---CChh-HHHHHHhhhc-----C---CCHHHHHHHHH
Q 005709 73 VKGLKHNSALELFCRKA---FRQNNRSPDLLELSEEVAHYAN---GNPL-ALQVLGSSLY-----Q---KSKEQWKDKLR 137 (681)
Q Consensus 73 l~~L~~~e~~~Lf~~~a---f~~~~~~~~~~~~~~~i~~~c~---GlPL-ai~~~g~~L~-----~---k~~~~w~~~l~ 137 (681)
+++++.++..+++...+ +......++ ....++++++ |.|- |+..+..... + -+.+.++.++.
T Consensus 198 l~~l~~~~~~~il~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~ 274 (387)
T 2v1u_A 198 FPPYTAPQLRDILETRAEEAFNPGVLDPD---VVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARA 274 (387)
T ss_dssp BCCCCHHHHHHHHHHHHHHHBCTTTBCSS---HHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHhhccCCCCCHH---HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 99999999999999875 332222232 3456677777 9994 3333322221 2 26777777776
Q ss_pred HhhhcCChhHHHHHHHHhcCCCHHHHHHHhhhcccCCCCC---HH----HHHHhhcC--C-----CchhhhHHHHhhccc
Q 005709 138 KLKLITDPNIYKVLKISYDGLNWEEKEIFLDVACFFKGED---VD----FVTRVQDD--P-----TSMHNGLNTLVEMSL 203 (681)
Q Consensus 138 ~l~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~Fp~~~~---~~----~~~~i~~~--~-----~~~~~~~~~L~~~sl 203 (681)
... ...+.-++.+|+.+.+..++.++...+|.. .. ....+++. . ......++.|...++
T Consensus 275 ~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gl 347 (387)
T 2v1u_A 275 EIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLGLEHVTLRRVSGIISELDMLGI 347 (387)
T ss_dssp HHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTS
T ss_pred HHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC
Confidence 653 234566788999999988888874433432 11 11122221 1 234556888888888
Q ss_pred eeEe
Q 005709 204 ITIS 207 (681)
Q Consensus 204 i~~~ 207 (681)
++..
T Consensus 348 i~~~ 351 (387)
T 2v1u_A 348 VKSR 351 (387)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 8764
No 173
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.76 E-value=0.027 Score=53.63 Aligned_cols=99 Identities=12% Similarity=0.101 Sum_probs=66.1
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCCchhh-hcc-CCceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRDKRLL-DKR-RVENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~~~v~-~~~-~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
+++.+||+||++.. .+.+...+.....+.++|+||+..... ... .-...+++++++.++..+++.+.+......
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 180 (226)
T 2chg_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK 180 (226)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC
T ss_pred cCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 67899999999865 444443333345678899999876322 111 112389999999999999999877532221
Q ss_pred ChhHHHHHHHHHHHcCCChhHHHHHHh
Q 005709 96 SPDLLELSEEVAHYANGNPLALQVLGS 122 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPLai~~~g~ 122 (681)
. -.+....+++.++|.|..+..+..
T Consensus 181 ~--~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 181 I--TEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp B--CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred C--CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1 124556788899999987655443
No 174
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.00 E-value=0.048 Score=55.62 Aligned_cols=96 Identities=13% Similarity=0.191 Sum_probs=63.3
Q ss_pred CCCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCCchh-hhcc-CCceEEEcCCCCHHHHHHHHHHHhccCCC
Q 005709 21 QQRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRDKRL-LDKR-RVENVYEVKGLKHNSALELFCRKAFRQNN 94 (681)
Q Consensus 21 ~~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~~~v-~~~~-~~~~~~~l~~L~~~e~~~Lf~~~af~~~~ 94 (681)
.+++.+||+||++.. ++.|...+.....+.++|+||+...- .... .-...+++++++.++..+++...+.....
T Consensus 105 ~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~ 184 (323)
T 1sxj_B 105 PGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDV 184 (323)
T ss_dssp TTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCC
Confidence 456889999999864 33343333333567889998876532 2221 12348999999999999999987643221
Q ss_pred CChhHHHHHHHHHHHcCCChhHHH
Q 005709 95 RSPDLLELSEEVAHYANGNPLALQ 118 (681)
Q Consensus 95 ~~~~~~~~~~~i~~~c~GlPLai~ 118 (681)
..+ .+....+++.++|.|..+.
T Consensus 185 ~~~--~~~~~~l~~~~~G~~r~a~ 206 (323)
T 1sxj_B 185 KYT--NDGLEAIIFTAEGDMRQAI 206 (323)
T ss_dssp CBC--HHHHHHHHHHHTTCHHHHH
T ss_pred CCC--HHHHHHHHHHcCCCHHHHH
Confidence 111 3456788999999995443
No 175
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.51 E-value=0.042 Score=48.22 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=21.4
Q ss_pred CCcEEEcccCCCcccCcc-ccCCCccceeccccc
Q 005709 384 NLERINLSGSELERLPAT-IKQFSQLRYLYLRNC 416 (681)
Q Consensus 384 ~L~~L~L~~n~l~~lp~~-i~~L~~L~~L~L~~c 416 (681)
+|++|+|++|+|+.+|.. |..+++|+.|+|++|
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 466677777777766654 556666666666664
No 176
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.51 E-value=2.1 Score=43.18 Aligned_cols=180 Identities=16% Similarity=0.164 Sum_probs=100.1
Q ss_pred HHHHHhCC---CeEEEEEECcChh----HHHhhcCCCCC------------------CCCcEEEEEeCCchhh-hcc--C
Q 005709 15 NIKKRLQQ---RKVLIVLDDVDDN----SKNFAGGLELF------------------SPGSRIIITTRDKRLL-DKR--R 66 (681)
Q Consensus 15 ~i~~~L~~---kr~LiVLDdv~~~----~~~l~~~~~~~------------------~~gSrIivTTR~~~v~-~~~--~ 66 (681)
.+...+.+ +..+|+|||++.. .+.+...+... .++.++|.||...... ... .
T Consensus 79 ~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R 158 (324)
T 1hqc_A 79 DLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSR 158 (324)
T ss_dssp HHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTT
T ss_pred HHHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhc
Confidence 44444543 6679999999764 22222111100 1245677777654321 111 1
Q ss_pred CceEEEcCCCCHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHcCCChhHHHHHHhhhcC---------CCHHHHHHHHH
Q 005709 67 VENVYEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGSSLYQ---------KSKEQWKDKLR 137 (681)
Q Consensus 67 ~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~L~~---------k~~~~w~~~l~ 137 (681)
....+++++++.+|..+++...+....... -.+....++++++|.|-.+..+...+.. -+.+....++.
T Consensus 159 ~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~ 236 (324)
T 1hqc_A 159 FGIVEHLEYYTPEELAQGVMRDARLLGVRI--TEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALA 236 (324)
T ss_dssp CSCEEECCCCCHHHHHHHHHHHHHTTTCCC--CHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHH
T ss_pred ccEEEecCCCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 235899999999999999988774432211 1345678899999999888776554321 13444444433
Q ss_pred HhhhcCChhHHHHHHHHhcCCCHHHHHHHhhhcccCCCC--CHHHHHHhhcCC-CchhhhHHH-HhhccceeEeC
Q 005709 138 KLKLITDPNIYKVLKISYDGLNWEEKEIFLDVACFFKGE--DVDFVTRVQDDP-TSMHNGLNT-LVEMSLITISA 208 (681)
Q Consensus 138 ~l~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~Fp~~~--~~~~~~~i~~~~-~~~~~~~~~-L~~~sli~~~~ 208 (681)
.+ ...+..++..++..+..++....|. ....+...+.-. ......++. +++.++++...
T Consensus 237 ~~------------~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~ 299 (324)
T 1hqc_A 237 AL------------GLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTP 299 (324)
T ss_dssp HH------------TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEET
T ss_pred Hh------------cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCC
Confidence 32 2234567787888777766444433 233333322111 122222344 77788887763
No 177
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.39 E-value=0.32 Score=50.75 Aligned_cols=183 Identities=13% Similarity=0.108 Sum_probs=104.3
Q ss_pred HHHHHhC--CCeEEEEEECcChh----HHHhhcCCCCCC----CCcEEEEEeCCchhhhccC-------CceEEEcCCCC
Q 005709 15 NIKKRLQ--QRKVLIVLDDVDDN----SKNFAGGLELFS----PGSRIIITTRDKRLLDKRR-------VENVYEVKGLK 77 (681)
Q Consensus 15 ~i~~~L~--~kr~LiVLDdv~~~----~~~l~~~~~~~~----~gSrIivTTR~~~v~~~~~-------~~~~~~l~~L~ 77 (681)
.+.+.+. +++.+||||+++.. +..|........ .+-.||+||++..+..... ....+++++++
T Consensus 115 ~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~ 194 (389)
T 1fnn_A 115 LLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYT 194 (389)
T ss_dssp HHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCB
T ss_pred HHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCC
Confidence 3444443 56889999999764 444443332211 4667888888775443331 12379999999
Q ss_pred HHHHHHHHHHHhcc---CCCCChhHHHHHHHHHHHc---------CCChhHHHHHHhhhc------C---CCHHHHHHHH
Q 005709 78 HNSALELFCRKAFR---QNNRSPDLLELSEEVAHYA---------NGNPLALQVLGSSLY------Q---KSKEQWKDKL 136 (681)
Q Consensus 78 ~~e~~~Lf~~~af~---~~~~~~~~~~~~~~i~~~c---------~GlPLai~~~g~~L~------~---k~~~~w~~~l 136 (681)
.++..+++...+-. ..... .+....+++++ +|.|-.+..+..... + -+.+....+.
T Consensus 195 ~~~~~~~l~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~ 271 (389)
T 1fnn_A 195 KDQIFDILLDRAKAGLAEGSYS---EDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSS 271 (389)
T ss_dssp HHHHHHHHHHHHHHHBCTTSSC---HHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Confidence 99999999887532 22222 34567788888 788755444332211 2 2344444444
Q ss_pred HHhhhcCChhHHHHHHHHhcCCCHHHHHHHhhhcccC---CC--CCHHHH----HHhhc--CC-----CchhhhHHHHhh
Q 005709 137 RKLKLITDPNIYKVLKISYDGLNWEEKEIFLDVACFF---KG--EDVDFV----TRVQD--DP-----TSMHNGLNTLVE 200 (681)
Q Consensus 137 ~~l~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~Fp---~~--~~~~~~----~~i~~--~~-----~~~~~~~~~L~~ 200 (681)
....... +.-.+..|+.+.+..+..++.+. .+ .....+ ..+++ |. ......++.|.+
T Consensus 272 ~~~~~~~-------~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 344 (389)
T 1fnn_A 272 KEVLFGI-------SEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERPRVHSQLWSYLNDLRE 344 (389)
T ss_dssp HHHSCCC-------CHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH
T ss_pred HHHhhhh-------HHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Confidence 4332111 22335668888888877777654 22 122211 11221 11 223455888999
Q ss_pred ccceeEe
Q 005709 201 MSLITIS 207 (681)
Q Consensus 201 ~sli~~~ 207 (681)
+++|...
T Consensus 345 ~gli~~~ 351 (389)
T 1fnn_A 345 KGIVETR 351 (389)
T ss_dssp TTSSEEE
T ss_pred CCCeEEe
Confidence 9999874
No 178
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=92.68 E-value=0.34 Score=49.19 Aligned_cols=100 Identities=14% Similarity=0.134 Sum_probs=66.1
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCCchh-hhcc-CCceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRDKRL-LDKR-RVENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~~~v-~~~~-~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
+++.+||+||++.. .+.|...+.....+.++|+||....- .... .-...+++++++.++..+++...+......
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~ 188 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE 188 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCE
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence 66889999999864 44444444444567889999876532 1211 112378999999999999998876443221
Q ss_pred ChhHHHHHHHHHHHcCCChhHHHHHHhh
Q 005709 96 SPDLLELSEEVAHYANGNPLALQVLGSS 123 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPLai~~~g~~ 123 (681)
--.+....+++.++|.|..+..+...
T Consensus 189 --~~~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 189 --LTEEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp --ECHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 11345677888999999876655443
No 179
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=89.05 E-value=1.2 Score=46.08 Aligned_cols=99 Identities=14% Similarity=0.041 Sum_probs=63.6
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCCch-hhhcc-CCceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRDKR-LLDKR-RVENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~~~-v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
+++.+||+||++.. .+.|...+.....+..+|++|.... +.... .-...+++++++.++..+++...+-+....
T Consensus 118 ~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~ 197 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 (373)
T ss_dssp SSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC
T ss_pred CCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 56789999999754 4444333333345677888876543 22211 123589999999999999998766332211
Q ss_pred ChhHHHHHHHHHHHcCCChhHHHHHHh
Q 005709 96 SPDLLELSEEVAHYANGNPLALQVLGS 122 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPLai~~~g~ 122 (681)
. -.+....+++.++|.|..+..+..
T Consensus 198 ~--~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 198 H--EPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp B--CHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred C--CHHHHHHHHHHCCCCHHHHHHHHH
Confidence 1 134457788999999998776543
No 180
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=88.91 E-value=2.7 Score=42.19 Aligned_cols=98 Identities=12% Similarity=0.118 Sum_probs=65.9
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCCch-hhhcc-CCceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRDKR-LLDKR-RVENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~~~-v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
+++.+||+|+++.. .+.|...+.....+.++|+||.... +.... .-...+++++++.++..+++...+-+....
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 180 (319)
T 2chq_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK 180 (319)
T ss_dssp CCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCC
T ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 56789999999865 5556666665567788888887653 22221 122489999999999999988776433221
Q ss_pred ChhHHHHHHHHHHHcCCChhHHHHHH
Q 005709 96 SPDLLELSEEVAHYANGNPLALQVLG 121 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPLai~~~g 121 (681)
- -.+....+++.++|.+..+..+.
T Consensus 181 i--~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 181 I--TEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp B--CHHHHHHHHHTTTTCHHHHHHHH
T ss_pred C--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 13345677788899887655443
No 181
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=85.25 E-value=3.7 Score=40.36 Aligned_cols=114 Identities=18% Similarity=0.121 Sum_probs=63.5
Q ss_pred CCCeEEEEEECcCh-------------h-HHHhh---cCCCCCCCCcEEEEEeCCchhhhcc----CCceEEEcCCCCH-
Q 005709 21 QQRKVLIVLDDVDD-------------N-SKNFA---GGLELFSPGSRIIITTRDKRLLDKR----RVENVYEVKGLKH- 78 (681)
Q Consensus 21 ~~kr~LiVLDdv~~-------------~-~~~l~---~~~~~~~~gSrIivTTR~~~v~~~~----~~~~~~~l~~L~~- 78 (681)
..+..+|+|||++. . ++.|. ......+....||.||...+.+... .....+++++++.
T Consensus 122 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r 201 (272)
T 1d2n_A 122 KSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATG 201 (272)
T ss_dssp TSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEH
T ss_pred hcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHH
Confidence 46788999999854 1 23333 3222233445678888877655431 1245789999998
Q ss_pred HHHHHHHHHHhccCCCCChhHHHHHHHHHHHcCC------ChhHHHHHHhhhcCCCHHHHHHHHHHhhh
Q 005709 79 NSALELFCRKAFRQNNRSPDLLELSEEVAHYANG------NPLALQVLGSSLYQKSKEQWKDKLRKLKL 141 (681)
Q Consensus 79 ~e~~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~G------lPLai~~~g~~L~~k~~~~w~~~l~~l~~ 141 (681)
++-.+++.... ... .+....+++.+.| ++-++.++-..........++.++..+..
T Consensus 202 ~~i~~i~~~~~----~~~---~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~~~~~~~~~~~~l~~ 263 (272)
T 1d2n_A 202 EQLLEALELLG----NFK---DKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLRE 263 (272)
T ss_dssp HHHHHHHHHHT----CSC---HHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHhcC----CCC---HHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Confidence 55555554421 111 2345667777777 34444333333333344556666665544
No 182
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=82.67 E-value=0.17 Score=47.71 Aligned_cols=36 Identities=14% Similarity=0.072 Sum_probs=20.5
Q ss_pred cCccEEEecCCCCCC-----CCCCC-CCCCceEEEcCCCCcc
Q 005709 315 KKLRYLHWHEYPLKT-----LPFSF-EPNYLIELNLPYSKVE 350 (681)
Q Consensus 315 ~~L~~L~l~~~~l~~-----lp~~~-~l~~L~~L~L~~n~l~ 350 (681)
..|+.|+|++|.+.. +-..+ .-+.|++|+|+.|.|.
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 456666666666552 11122 3355777777777665
No 183
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=82.37 E-value=1.1 Score=42.80 Aligned_cols=95 Identities=14% Similarity=0.153 Sum_probs=55.7
Q ss_pred CeEEEEEECcChh------HHHhhcCCCC-CCCCc-EEEEEeCCch---------hhhccCCceEEEcCCCCHHHHHHHH
Q 005709 23 RKVLIVLDDVDDN------SKNFAGGLEL-FSPGS-RIIITTRDKR---------LLDKRRVENVYEVKGLKHNSALELF 85 (681)
Q Consensus 23 kr~LiVLDdv~~~------~~~l~~~~~~-~~~gS-rIivTTR~~~---------v~~~~~~~~~~~l~~L~~~e~~~Lf 85 (681)
+.-+||+||++.. .+.+...+.. ...+. +||+||+... +...+.....+++++++.++..+++
T Consensus 104 ~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l 183 (242)
T 3bos_A 104 QFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAAL 183 (242)
T ss_dssp GSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHH
T ss_pred CCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHH
Confidence 4568999999654 1112211110 01222 5888876432 1111112268999999999999999
Q ss_pred HHHhccCC-CCChhHHHHHHHHHHHcCCChhHHHHH
Q 005709 86 CRKAFRQN-NRSPDLLELSEEVAHYANGNPLALQVL 120 (681)
Q Consensus 86 ~~~af~~~-~~~~~~~~~~~~i~~~c~GlPLai~~~ 120 (681)
...+-... ... .+....++++++|.+-.+..+
T Consensus 184 ~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 184 QRRAAMRGLQLP---EDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp HHHHHHTTCCCC---HHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHcCCCCC---HHHHHHHHHHccCCHHHHHHH
Confidence 88764322 122 345567888888887666544
No 184
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=81.26 E-value=0.66 Score=43.63 Aligned_cols=36 Identities=8% Similarity=0.155 Sum_probs=18.2
Q ss_pred cCccEEEecCC-CCCC-----CCCCC-CCCCceEEEcCCCCcc
Q 005709 315 KKLRYLHWHEY-PLKT-----LPFSF-EPNYLIELNLPYSKVE 350 (681)
Q Consensus 315 ~~L~~L~l~~~-~l~~-----lp~~~-~l~~L~~L~L~~n~l~ 350 (681)
+.|+.|+|+++ .+.. +-..+ .-..|+.|+|++|.|.
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS 83 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC
Confidence 45667777664 4431 11111 2345666666666654
No 185
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=80.81 E-value=3.9 Score=41.70 Aligned_cols=93 Identities=15% Similarity=0.089 Sum_probs=61.6
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCCch-hhhcc-CCceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRDKR-LLDKR-RVENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~~~-v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
+++-++|+|+++.. ...|...+..-.++..+|++|...+ +...+ .-...+++++++.++..+.+...+ ..
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~~ 182 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----TM 182 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----CC
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----CC
Confidence 56778999999864 3334333333346677777776653 43332 123489999999999999888775 11
Q ss_pred ChhHHHHHHHHHHHcCCChhHHHHHH
Q 005709 96 SPDLLELSEEVAHYANGNPLALQVLG 121 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPLai~~~g 121 (681)
. .+.+..+++.++|.|..+..+.
T Consensus 183 ~---~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 183 S---QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp C---HHHHHHHHHHTTTCHHHHHHTT
T ss_pred C---HHHHHHHHHHcCCCHHHHHHHh
Confidence 1 2345678899999998765544
No 186
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=78.89 E-value=5.2 Score=43.60 Aligned_cols=95 Identities=16% Similarity=0.250 Sum_probs=57.2
Q ss_pred CCeEEEEEECcChh-------HHHhhcCCCCCCCCcEEEEEeCCch---hhhccCCceEEEcCCCCHHHHHHHHHHHhcc
Q 005709 22 QRKVLIVLDDVDDN-------SKNFAGGLELFSPGSRIIITTRDKR---LLDKRRVENVYEVKGLKHNSALELFCRKAFR 91 (681)
Q Consensus 22 ~kr~LiVLDdv~~~-------~~~l~~~~~~~~~gSrIivTTR~~~---v~~~~~~~~~~~l~~L~~~e~~~Lf~~~af~ 91 (681)
+++.+||+|+|+.. +..+...... .+.+||++|.+.. +.........+++++++.++..+.+...+.+
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~ 224 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIR 224 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 57789999999753 2333222211 2344666665432 2222223458999999999999999887754
Q ss_pred CC-CCChhHHHHHHHHHHHcCCC-hhHHHHHH
Q 005709 92 QN-NRSPDLLELSEEVAHYANGN-PLALQVLG 121 (681)
Q Consensus 92 ~~-~~~~~~~~~~~~i~~~c~Gl-PLai~~~g 121 (681)
.. ...+ +....|++.++|. +-|+..+.
T Consensus 225 ~~~~i~~---~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 225 EKFKLDP---NVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp HTCCCCT---THHHHHHHHTTTCHHHHHHHHT
T ss_pred cCCCCCH---HHHHHHHHHcCCcHHHHHHHHH
Confidence 32 2222 2356788889994 44455443
No 187
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=76.51 E-value=4.8 Score=41.13 Aligned_cols=98 Identities=9% Similarity=0.131 Sum_probs=59.5
Q ss_pred CeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCCc-hhhhcc-CCceEEEcCCCCHHHHHHHHHHHhccCCCCC
Q 005709 23 RKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRDK-RLLDKR-RVENVYEVKGLKHNSALELFCRKAFRQNNRS 96 (681)
Q Consensus 23 kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~ 96 (681)
+.-++|||++... .+.+...+.....+.++|+||.+. .+.... .-...+++++++.++..+.+...+-...-.-
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 213 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQL 213 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEE
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCC
Confidence 4558999998754 222222222223567888888764 232222 1125899999999999999988764322110
Q ss_pred hhHHHHHHHHHHHcCCChhHHHHHH
Q 005709 97 PDLLELSEEVAHYANGNPLALQVLG 121 (681)
Q Consensus 97 ~~~~~~~~~i~~~c~GlPLai~~~g 121 (681)
+ ..+....+++.++|.+-.+..+.
T Consensus 214 ~-~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 214 E-TKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp C-CSHHHHHHHHHHTTCHHHHHHHH
T ss_pred C-cHHHHHHHHHHcCCCHHHHHHHH
Confidence 0 02345678888999887655544
No 188
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=75.99 E-value=3.2 Score=44.22 Aligned_cols=101 Identities=14% Similarity=0.198 Sum_probs=60.0
Q ss_pred HHHHhCCCeEEEEEECcChh------HHHhhcCCCC-CCCCcEEEEEeCCc---------hhhhccCCceEEEcCCCCHH
Q 005709 16 IKKRLQQRKVLIVLDDVDDN------SKNFAGGLEL-FSPGSRIIITTRDK---------RLLDKRRVENVYEVKGLKHN 79 (681)
Q Consensus 16 i~~~L~~kr~LiVLDdv~~~------~~~l~~~~~~-~~~gSrIivTTR~~---------~v~~~~~~~~~~~l~~L~~~ 79 (681)
+.+.++.+.-+|+|||++.. -+.+...+.. ...|..||+||... .+...+....++.+++++.+
T Consensus 187 ~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e 266 (440)
T 2z4s_A 187 FREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEE 266 (440)
T ss_dssp HHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHH
T ss_pred HHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHH
Confidence 34444436679999999643 1222211110 13577899998763 22222323357899999999
Q ss_pred HHHHHHHHHhccCC-CCChhHHHHHHHHHHHcCCChhHHHH
Q 005709 80 SALELFCRKAFRQN-NRSPDLLELSEEVAHYANGNPLALQV 119 (681)
Q Consensus 80 e~~~Lf~~~af~~~-~~~~~~~~~~~~i~~~c~GlPLai~~ 119 (681)
+-.+++.+.+-... ...+ ++...|++++.|.+-.+..
T Consensus 267 ~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 267 TRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp HHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHH
Confidence 99999988874322 1222 2345677888887765443
No 189
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=69.26 E-value=95 Score=30.90 Aligned_cols=185 Identities=12% Similarity=0.127 Sum_probs=97.4
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCC------------------CCCCcEEEEEeCCchhhh-cc--CCceEEEcCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLEL------------------FSPGSRIIITTRDKRLLD-KR--RVENVYEVKGL 76 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~------------------~~~gSrIivTTR~~~v~~-~~--~~~~~~~l~~L 76 (681)
.+..+|+||+++.. ...|...+.. ..++-++|.||....... .. ..+..++++++
T Consensus 105 ~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~ 184 (338)
T 3pfi_A 105 SEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFY 184 (338)
T ss_dssp CTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCC
T ss_pred cCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCc
Confidence 45678999999865 2222211111 011346666666533211 11 23468999999
Q ss_pred CHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHcCCChhHHHHHHhhhc------C---CCHHHHHHHHHHhhhcCChhH
Q 005709 77 KHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPLALQVLGSSLY------Q---KSKEQWKDKLRKLKLITDPNI 147 (681)
Q Consensus 77 ~~~e~~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~L~------~---k~~~~w~~~l~~l~~~~~~~i 147 (681)
+.++..+++...+-..... --.+....+++.+.|.|-.+..+...+. + -+.+....++..
T Consensus 185 ~~~e~~~il~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~--------- 253 (338)
T 3pfi_A 185 KDSELALILQKAALKLNKT--CEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNS--------- 253 (338)
T ss_dssp CHHHHHHHHHHHHHHTTCE--ECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH---------
T ss_pred CHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHH---------
Confidence 9999999998876432211 1134556777788999865544433211 1 133333333332
Q ss_pred HHHHHHHhcCCCHHHHHHHhhhcccCCCCC--HHHHHHhhcCC-CchhhhHH-HHhhccceeEe-CCeEeehHHHHHHH
Q 005709 148 YKVLKISYDGLNWEEKEIFLDVACFFKGED--VDFVTRVQDDP-TSMHNGLN-TLVEMSLITIS-ANRLQMHDILQELG 221 (681)
Q Consensus 148 ~~~l~~sy~~L~~~~k~cfl~~a~Fp~~~~--~~~~~~i~~~~-~~~~~~~~-~L~~~sli~~~-~~~~~mHdll~~~~ 221 (681)
+..+...++..++..+..++-. .+.. ...+...+.-. ......++ .|++.++|... .+++....-+..++
T Consensus 254 ---~~~~~~~l~~~e~~~l~~l~~~-~~~~~~~~~~a~~lg~~~~tl~~~l~~~l~~~gli~~~~~g~~~t~~~~~~~~ 328 (338)
T 3pfi_A 254 ---LGVNELGFDAMDLRYLELLTAA-KQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASAKSYSALK 328 (338)
T ss_dssp ---HTCCTTCCCHHHHHHHHHHHHS-CSCCBCHHHHHHHTTCCHHHHHHTTHHHHHHTTSEEEETTEEEECHHHHHHHH
T ss_pred ---hCCcccCCCHHHHHHHHHHHHh-cCCCchHHHHHHHhCCCHHHHHHHHhHHHHHcCceecCCCcccccHHHHHHhc
Confidence 2233445666656666555544 3332 33333222111 22233455 78889999877 56665554444443
No 190
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=65.59 E-value=15 Score=37.11 Aligned_cols=98 Identities=15% Similarity=0.169 Sum_probs=60.5
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCCch-hhhcc-CCceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRDKR-LLDKR-RVENVYEVKGLKHNSALELFCRKAFRQNNR 95 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~~~-v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~ 95 (681)
+++-+|++|+++.. ...|...+.......++|++|.... +.... .-...+++++++.++..+.+...+-.....
T Consensus 132 ~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 211 (353)
T 1sxj_D 132 PPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVK 211 (353)
T ss_dssp CSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCC
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCC
Confidence 34569999998754 3333332222345677888775442 22221 012378999999999999988876432211
Q ss_pred ChhHHHHHHHHHHHcCCChhHHHHHH
Q 005709 96 SPDLLELSEEVAHYANGNPLALQVLG 121 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPLai~~~g 121 (681)
-+ .+....++++++|.|-.+..+.
T Consensus 212 i~--~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 212 CD--DGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp CC--HHHHHHHHHHTSSCHHHHHHHH
T ss_pred CC--HHHHHHHHHHcCCCHHHHHHHH
Confidence 11 3456788899999988755443
No 191
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=58.18 E-value=30 Score=33.69 Aligned_cols=94 Identities=21% Similarity=0.304 Sum_probs=55.2
Q ss_pred CCCeEEEEEECcChh------------------HHHhhcCCC--CCCCCcEEEEEeCCchhhh-----ccCCceEEEcCC
Q 005709 21 QQRKVLIVLDDVDDN------------------SKNFAGGLE--LFSPGSRIIITTRDKRLLD-----KRRVENVYEVKG 75 (681)
Q Consensus 21 ~~kr~LiVLDdv~~~------------------~~~l~~~~~--~~~~gSrIivTTR~~~v~~-----~~~~~~~~~l~~ 75 (681)
..+..+|+|||++.. +..+....+ ....+..||.||...+.+. .......+.++.
T Consensus 108 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~ 187 (285)
T 3h4m_A 108 EKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPA 187 (285)
T ss_dssp HTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCC
T ss_pred HcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECC
Confidence 345679999999541 222222111 1234667888887654432 112345899999
Q ss_pred CCHHHHHHHHHHHhccCCCC-ChhHHHHHHHHHHHcCC-ChhHHH
Q 005709 76 LKHNSALELFCRKAFRQNNR-SPDLLELSEEVAHYANG-NPLALQ 118 (681)
Q Consensus 76 L~~~e~~~Lf~~~af~~~~~-~~~~~~~~~~i~~~c~G-lPLai~ 118 (681)
++.++-.+++...+.+.... ..++ ..++..+.| .|-.|.
T Consensus 188 p~~~~r~~il~~~~~~~~~~~~~~~----~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 188 PDEKGRLEILKIHTRKMNLAEDVNL----EEIAKMTEGCVGAELK 228 (285)
T ss_dssp CCHHHHHHHHHHHHTTSCBCTTCCH----HHHHHHCTTCCHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCcCCH----HHHHHHcCCCCHHHHH
Confidence 99999999998887543221 1223 455566666 343443
No 192
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=52.33 E-value=71 Score=30.34 Aligned_cols=99 Identities=11% Similarity=0.108 Sum_probs=55.9
Q ss_pred CCCeEEEEEECcChh-------------------HHHhhcCCCC--CCCCcEEEEEeCCchhhhc-c----CCceEEEcC
Q 005709 21 QQRKVLIVLDDVDDN-------------------SKNFAGGLEL--FSPGSRIIITTRDKRLLDK-R----RVENVYEVK 74 (681)
Q Consensus 21 ~~kr~LiVLDdv~~~-------------------~~~l~~~~~~--~~~gSrIivTTR~~~v~~~-~----~~~~~~~l~ 74 (681)
.....+|+|||++.. +..+...+.. ...+-.||.||.....+.. . ..+..+.++
T Consensus 96 ~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~ 175 (262)
T 2qz4_A 96 ARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFID 175 (262)
T ss_dssp HTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECC
T ss_pred hcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeC
Confidence 345689999999742 2222221111 1235567777766543221 1 235688999
Q ss_pred CCCHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHcCCChh-HHHHH
Q 005709 75 GLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPL-ALQVL 120 (681)
Q Consensus 75 ~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~ 120 (681)
.++.++-.+++...+-+.... .........+++.+.|.+- .|..+
T Consensus 176 ~p~~~~r~~il~~~~~~~~~~-~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 176 LPTLQERREIFEQHLKSLKLT-QSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp SCCHHHHHHHHHHHHHHTTCC-BTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhCCCC-cchhhHHHHHHHHCCCCCHHHHHHH
Confidence 999999999998876432221 1222234667777777654 44333
No 193
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=51.32 E-value=27 Score=34.96 Aligned_cols=88 Identities=18% Similarity=0.171 Sum_probs=51.2
Q ss_pred eEEEEEECcChh------HHHhhcCCC-CCCCCcEEEEEeCCc---------hhhhccCCceEEEcCCCCHHHHHHHHHH
Q 005709 24 KVLIVLDDVDDN------SKNFAGGLE-LFSPGSRIIITTRDK---------RLLDKRRVENVYEVKGLKHNSALELFCR 87 (681)
Q Consensus 24 r~LiVLDdv~~~------~~~l~~~~~-~~~~gSrIivTTR~~---------~v~~~~~~~~~~~l~~L~~~e~~~Lf~~ 87 (681)
.-+|++||+... .+.+...+. ....|.+||+||... .+...+.....+++++ +.++-.+++..
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~ 177 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKE 177 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHH
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHH
Confidence 568999998643 122221111 012466788888633 1222222336799999 99999999998
Q ss_pred HhccCCCCChhHHHHHHHHHHHcCCChh
Q 005709 88 KAFRQNNRSPDLLELSEEVAHYANGNPL 115 (681)
Q Consensus 88 ~af~~~~~~~~~~~~~~~i~~~c~GlPL 115 (681)
.+......-+ .+....+++++ |..-
T Consensus 178 ~~~~~~~~l~--~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 178 KLKEFNLELR--KEVIDYLLENT-KNVR 202 (324)
T ss_dssp HHHHTTCCCC--HHHHHHHHHHC-SSHH
T ss_pred HHHhcCCCCC--HHHHHHHHHhC-CCHH
Confidence 8753222111 33456677777 6554
No 194
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=47.61 E-value=1.5e+02 Score=30.04 Aligned_cols=98 Identities=11% Similarity=0.109 Sum_probs=55.1
Q ss_pred CCeEEEEEECcChh-------------------HHHhhcCCCCCCCCcEEEEEeCCchhhh-cc--CCceEEEcCCCCHH
Q 005709 22 QRKVLIVLDDVDDN-------------------SKNFAGGLELFSPGSRIIITTRDKRLLD-KR--RVENVYEVKGLKHN 79 (681)
Q Consensus 22 ~kr~LiVLDdv~~~-------------------~~~l~~~~~~~~~gSrIivTTR~~~v~~-~~--~~~~~~~l~~L~~~ 79 (681)
.+..+|+||+++.. +..+.+.......+-.||.||.....+. .. .....+.++..+.+
T Consensus 175 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~ 254 (357)
T 3d8b_A 175 QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEAS 254 (357)
T ss_dssp TCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHH
T ss_pred cCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHH
Confidence 56689999999431 2222222111234456666776543221 11 23457899999999
Q ss_pred HHHHHHHHHhccCCCCChhHHHHHHHHHHHcCC-ChhHHHHHH
Q 005709 80 SALELFCRKAFRQNNRSPDLLELSEEVAHYANG-NPLALQVLG 121 (681)
Q Consensus 80 e~~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~G-lPLai~~~g 121 (681)
+-.+++...+-....... ......+++.+.| .+-+|..+.
T Consensus 255 ~r~~il~~~~~~~~~~l~--~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 255 ARKQIVINLMSKEQCCLS--EEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp HHHHHHHHHHHTSCBCCC--HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCcc--HHHHHHHHHHcCCCCHHHHHHHH
Confidence 999998877643221111 2345677778888 444555443
No 195
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=47.53 E-value=43 Score=33.75 Aligned_cols=97 Identities=10% Similarity=-0.003 Sum_probs=61.2
Q ss_pred CCCeEEEEEECcCh-h----HHHhhcCCCCCCCCcEEEEEeCC-------chhhhccC-CceEEEcCCCCHHHHHHHHHH
Q 005709 21 QQRKVLIVLDDVDD-N----SKNFAGGLELFSPGSRIIITTRD-------KRLLDKRR-VENVYEVKGLKHNSALELFCR 87 (681)
Q Consensus 21 ~~kr~LiVLDdv~~-~----~~~l~~~~~~~~~gSrIivTTR~-------~~v~~~~~-~~~~~~l~~L~~~e~~~Lf~~ 87 (681)
-+++=++|+|+++. . ++.|...+..-.++..+|++|-. +.+.+.+. ....++..+++.++-.+.+.+
T Consensus 74 f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~ 153 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAA 153 (343)
T ss_dssp CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHH
Confidence 46667788999865 2 45554444433568888877743 23444432 235899999999988887777
Q ss_pred HhccCCCCChhHHHHHHHHHHHcCCChhHHHH
Q 005709 88 KAFRQNNRSPDLLELSEEVAHYANGNPLALQV 119 (681)
Q Consensus 88 ~af~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 119 (681)
.+-...-. --.+.+..+++.++|.+.++..
T Consensus 154 ~~~~~g~~--i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 154 RAKQLNLE--LDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHTTCE--ECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHcCCC--CCHHHHHHHHHHhchHHHHHHH
Confidence 65332211 1134566788888888777665
No 196
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=46.04 E-value=1.4e+02 Score=29.55 Aligned_cols=91 Identities=16% Similarity=0.100 Sum_probs=53.6
Q ss_pred CCCeEEEEEECcChh---------------HHHhhc---CCCCCCCCcEEEEEeCCchhhhcc---CCceEEEcCCCCHH
Q 005709 21 QQRKVLIVLDDVDDN---------------SKNFAG---GLELFSPGSRIIITTRDKRLLDKR---RVENVYEVKGLKHN 79 (681)
Q Consensus 21 ~~kr~LiVLDdv~~~---------------~~~l~~---~~~~~~~gSrIivTTR~~~v~~~~---~~~~~~~l~~L~~~ 79 (681)
..+..+|+||+++.. ...+.. .......+..||.||...+.+... ..+..+.++..+.+
T Consensus 108 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~ 187 (322)
T 3eie_A 108 ENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLA 187 (322)
T ss_dssp HTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHH
T ss_pred hcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHH
Confidence 345689999999742 122221 121223556677788765433210 24568899999999
Q ss_pred HHHHHHHHHhccCCCCChhHHHHHHHHHHHcCCC
Q 005709 80 SALELFCRKAFRQNNRSPDLLELSEEVAHYANGN 113 (681)
Q Consensus 80 e~~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~Gl 113 (681)
+-.+++..++.+...... ......+++++.|.
T Consensus 188 ~r~~il~~~~~~~~~~~~--~~~l~~la~~t~g~ 219 (322)
T 3eie_A 188 ARTTMFEINVGDTPCVLT--KEDYRTLGAMTEGY 219 (322)
T ss_dssp HHHHHHHHHHTTCCCCCC--HHHHHHHHHTTTTC
T ss_pred HHHHHHHHHhccCCCCCC--HHHHHHHHHHcCCC
Confidence 999999988754332111 12335666777663
No 197
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=44.24 E-value=1.8e+02 Score=29.31 Aligned_cols=91 Identities=15% Similarity=0.075 Sum_probs=52.4
Q ss_pred CCCeEEEEEECcChh---------------HHHhhcC---CCCCCCCcEEEEEeCCchhhhc-c--CCceEEEcCCCCHH
Q 005709 21 QQRKVLIVLDDVDDN---------------SKNFAGG---LELFSPGSRIIITTRDKRLLDK-R--RVENVYEVKGLKHN 79 (681)
Q Consensus 21 ~~kr~LiVLDdv~~~---------------~~~l~~~---~~~~~~gSrIivTTR~~~v~~~-~--~~~~~~~l~~L~~~ 79 (681)
..+..+|+||+++.. ...+... ......+-.||.||...+.+.. + ..+..+.++..+.+
T Consensus 141 ~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~ 220 (355)
T 2qp9_X 141 ENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLA 220 (355)
T ss_dssp HTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHH
T ss_pred HcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHH
Confidence 346789999999742 1122211 1112345566767765532211 1 34568899999999
Q ss_pred HHHHHHHHHhccCCCCChhHHHHHHHHHHHcCCC
Q 005709 80 SALELFCRKAFRQNNRSPDLLELSEEVAHYANGN 113 (681)
Q Consensus 80 e~~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~Gl 113 (681)
+-.+++...+-+...... ......+++++.|.
T Consensus 221 ~r~~il~~~l~~~~~~~~--~~~l~~la~~t~G~ 252 (355)
T 2qp9_X 221 ARTTMFEINVGDTPSVLT--KEDYRTLGAMTEGY 252 (355)
T ss_dssp HHHHHHHHHHTTSCBCCC--HHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhhCCCCCC--HHHHHHHHHHcCCC
Confidence 999999887744321111 22345667777774
No 198
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=43.95 E-value=55 Score=33.10 Aligned_cols=89 Identities=10% Similarity=0.023 Sum_probs=52.7
Q ss_pred EEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCC-----------------chhhhccCCceEEEcCCCCHHHHHH
Q 005709 25 VLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRD-----------------KRLLDKRRVENVYEVKGLKHNSALE 83 (681)
Q Consensus 25 ~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~-----------------~~v~~~~~~~~~~~l~~L~~~e~~~ 83 (681)
.+|+||+++.. ...|...+...... .|+++|.. +.+...+ ..+++++++.++..+
T Consensus 191 ~vl~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~---~~i~~~~~~~~e~~~ 266 (368)
T 3uk6_A 191 GVLFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRL---LIVSTTPYSEKDTKQ 266 (368)
T ss_dssp CEEEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTE---EEEEECCCCHHHHHH
T ss_pred ceEEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhc---cEEEecCCCHHHHHH
Confidence 49999999875 44444444333333 44445431 1222222 257999999999999
Q ss_pred HHHHHhccCCCCChhHHHHHHHHHHHcC-CChhHHHH
Q 005709 84 LFCRKAFRQNNRSPDLLELSEEVAHYAN-GNPLALQV 119 (681)
Q Consensus 84 Lf~~~af~~~~~~~~~~~~~~~i~~~c~-GlPLai~~ 119 (681)
++...+-.....- -.+....+++++. |.|-.+..
T Consensus 267 il~~~~~~~~~~~--~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 267 ILRIRCEEEDVEM--SEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp HHHHHHHHTTCCB--CHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHcCCCC--CHHHHHHHHHHhcCCCHHHHHH
Confidence 9998764422211 1345567777887 76655443
No 199
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=41.89 E-value=2.3e+02 Score=28.02 Aligned_cols=92 Identities=15% Similarity=0.152 Sum_probs=53.2
Q ss_pred CCCeEEEEEECcChh---------------HHHhhcC---CCCCCCCcEEEEEeCCchhhhc-c--CCceEEEcCCCCHH
Q 005709 21 QQRKVLIVLDDVDDN---------------SKNFAGG---LELFSPGSRIIITTRDKRLLDK-R--RVENVYEVKGLKHN 79 (681)
Q Consensus 21 ~~kr~LiVLDdv~~~---------------~~~l~~~---~~~~~~gSrIivTTR~~~v~~~-~--~~~~~~~l~~L~~~ 79 (681)
..+..+|++|+++.. ...+... ......+-.||.||...+.+.. . ..+..+.++..+.+
T Consensus 103 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~ 182 (322)
T 1xwi_A 103 ENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPH 182 (322)
T ss_dssp HTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHH
T ss_pred hcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHH
Confidence 356789999999753 1122221 1112345556667765433221 1 34568899999999
Q ss_pred HHHHHHHHHhccCCCCChhHHHHHHHHHHHcCCCh
Q 005709 80 SALELFCRKAFRQNNRSPDLLELSEEVAHYANGNP 114 (681)
Q Consensus 80 e~~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlP 114 (681)
+-.+++..++-+...... ......+++.+.|..
T Consensus 183 ~r~~il~~~l~~~~~~l~--~~~l~~la~~t~G~s 215 (322)
T 1xwi_A 183 ARAAMFKLHLGTTQNSLT--EADFRELGRKTDGYS 215 (322)
T ss_dssp HHHHHHHHHHTTCCBCCC--HHHHHHHHHTCTTCC
T ss_pred HHHHHHHHHHhcCCCCCC--HHHHHHHHHHcCCCC
Confidence 999999887643221111 223456777777763
No 200
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=41.70 E-value=14 Score=34.50 Aligned_cols=48 Identities=21% Similarity=0.237 Sum_probs=29.7
Q ss_pred chHHHHHHhCCCeE-EEEEECcChh-------HHHhhcCCCCCCCCcEEEEEeCCc
Q 005709 12 ITPNIKKRLQQRKV-LIVLDDVDDN-------SKNFAGGLELFSPGSRIIITTRDK 59 (681)
Q Consensus 12 ~~~~i~~~L~~kr~-LiVLDdv~~~-------~~~l~~~~~~~~~gSrIivTTR~~ 59 (681)
.-+.+++.+.+.+| |||||++... .+.+...+..-...--||+|+|..
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 34556777766665 9999998442 222222222223566799999986
No 201
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=38.51 E-value=2.5e+02 Score=29.36 Aligned_cols=91 Identities=16% Similarity=0.193 Sum_probs=55.3
Q ss_pred CCCeEEEEEECcChh---------------HHHhhcCCCCC---CCCcEEEEEeCCchhhhc---cCCceEEEcCCCCHH
Q 005709 21 QQRKVLIVLDDVDDN---------------SKNFAGGLELF---SPGSRIIITTRDKRLLDK---RRVENVYEVKGLKHN 79 (681)
Q Consensus 21 ~~kr~LiVLDdv~~~---------------~~~l~~~~~~~---~~gSrIivTTR~~~v~~~---~~~~~~~~l~~L~~~ 79 (681)
..+..+|++|+++.. ...+...++.. ..+-.||.||.....+.. -..+..+.++..+.+
T Consensus 225 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~ 304 (444)
T 2zan_A 225 ENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAH 304 (444)
T ss_dssp HSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHH
T ss_pred HcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHH
Confidence 356789999999742 23444444432 345667778866533221 134568899999999
Q ss_pred HHHHHHHHHhccCCCCChhHHHHHHHHHHHcCCC
Q 005709 80 SALELFCRKAFRQNNRSPDLLELSEEVAHYANGN 113 (681)
Q Consensus 80 e~~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~Gl 113 (681)
+-.++|..++-+...... ......+++.+.|.
T Consensus 305 ~r~~il~~~l~~~~~~l~--~~~l~~la~~t~G~ 336 (444)
T 2zan_A 305 ARAAMFRLHLGSTQNSLT--EADFQELGRKTDGY 336 (444)
T ss_dssp HHHHHHHHHHTTSCEECC--HHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhcCCCCCC--HHHHHHHHHHcCCC
Confidence 999999887743221111 12345667777774
No 202
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=36.06 E-value=64 Score=31.99 Aligned_cols=94 Identities=14% Similarity=0.165 Sum_probs=51.2
Q ss_pred CeEEEEEECcChh-----HHHhhcCCCCCCCCcEEEEEeCCchh-hhcc-CCceEEEcCCCCHHHHHHHHH-------HH
Q 005709 23 RKVLIVLDDVDDN-----SKNFAGGLELFSPGSRIIITTRDKRL-LDKR-RVENVYEVKGLKHNSALELFC-------RK 88 (681)
Q Consensus 23 kr~LiVLDdv~~~-----~~~l~~~~~~~~~gSrIivTTR~~~v-~~~~-~~~~~~~l~~L~~~e~~~Lf~-------~~ 88 (681)
++-+||+||++.. .+.|...+.....+.+||+||....- .... .-...+++++++.++-.+++. ..
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~ 184 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEI 184 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 6789999999743 22333222222356788888876531 1111 012479999999888543332 22
Q ss_pred hccCC-CCChhHHHHHHHHHHHcCCChhHHH
Q 005709 89 AFRQN-NRSPDLLELSEEVAHYANGNPLALQ 118 (681)
Q Consensus 89 af~~~-~~~~~~~~~~~~i~~~c~GlPLai~ 118 (681)
+-... ...+ .+....+++.++|.+-.+.
T Consensus 185 ~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 185 CKHEGIAIAD--MKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp HHHHTCCBSC--HHHHHHHHHHTCSCTTHHH
T ss_pred HHHcCCCCCc--HHHHHHHHHhCCCCHHHHH
Confidence 21111 1111 2456677888888665433
No 203
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=32.52 E-value=42 Score=33.02 Aligned_cols=66 Identities=9% Similarity=0.079 Sum_probs=44.0
Q ss_pred eEEEEEECcC-----------hh--HHHhhcCCCCCCCCcEEEEEeCCch----------hhhccCCceEEEcCCCCHHH
Q 005709 24 KVLIVLDDVD-----------DN--SKNFAGGLELFSPGSRIIITTRDKR----------LLDKRRVENVYEVKGLKHNS 80 (681)
Q Consensus 24 r~LiVLDdv~-----------~~--~~~l~~~~~~~~~gSrIivTTR~~~----------v~~~~~~~~~~~l~~L~~~e 80 (681)
.-+|++|+++ .. ...|...+.....+.+||.||.... +... ....+++++++.++
T Consensus 131 ~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~ 208 (309)
T 3syl_A 131 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEE 208 (309)
T ss_dssp TSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHH
T ss_pred CCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHH
Confidence 4589999997 22 3444443333445678888886432 2222 23689999999999
Q ss_pred HHHHHHHHhcc
Q 005709 81 ALELFCRKAFR 91 (681)
Q Consensus 81 ~~~Lf~~~af~ 91 (681)
-.+++...+-.
T Consensus 209 ~~~il~~~l~~ 219 (309)
T 3syl_A 209 LFEIAGHMLDD 219 (309)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887643
No 204
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=32.23 E-value=22 Score=35.64 Aligned_cols=67 Identities=19% Similarity=0.196 Sum_probs=46.1
Q ss_pred CCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCCc-hhhhccCCceEEEcCCCCHHHHHHHHHHHh
Q 005709 22 QRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRDK-RLLDKRRVENVYEVKGLKHNSALELFCRKA 89 (681)
Q Consensus 22 ~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~a 89 (681)
+++-++|+|+++.. .+.|...+....+.+++|.+|... .+...+... .++++++++++..+.+.+.+
T Consensus 81 ~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp SSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred CCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 45668999999764 333333333334677887777554 555555445 89999999999999887765
No 205
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=32.01 E-value=85 Score=33.12 Aligned_cols=99 Identities=17% Similarity=0.141 Sum_probs=55.3
Q ss_pred CCCeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCCch--hhhcc-CCceEEEcCCCCHHHHHHHHHHHhccCC
Q 005709 21 QQRKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRDKR--LLDKR-RVENVYEVKGLKHNSALELFCRKAFRQN 93 (681)
Q Consensus 21 ~~kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~~~--v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~af~~~ 93 (681)
.+++.+|++|+++.. .+.|...+.. +.-.-|..||.+.. +.... .-..++.+++++.++-.+++.+.+-...
T Consensus 104 ~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~ 182 (447)
T 3pvs_A 104 AGRRTILFVDEVHRFNKSQQDAFLPHIED-GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKT 182 (447)
T ss_dssp TTCCEEEEEETTTCC------CCHHHHHT-TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTT
T ss_pred cCCCcEEEEeChhhhCHHHHHHHHHHHhc-CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHh
Confidence 357889999999765 2233322221 22222333555542 21111 1234889999999999999988764311
Q ss_pred -----CCChhHHHHHHHHHHHcCCChhHHHHH
Q 005709 94 -----NRSPDLLELSEEVAHYANGNPLALQVL 120 (681)
Q Consensus 94 -----~~~~~~~~~~~~i~~~c~GlPLai~~~ 120 (681)
....--.+....++++++|.+-.+..+
T Consensus 183 ~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 183 RGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp TSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred hhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 100112345567778888877655443
No 206
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=31.84 E-value=3.3e+02 Score=27.59 Aligned_cols=70 Identities=17% Similarity=0.098 Sum_probs=42.0
Q ss_pred CcEEEEEeCCchhhhc-c--CCceEEEcCCCCHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHcCCChh-HHHHH
Q 005709 49 GSRIIITTRDKRLLDK-R--RVENVYEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPL-ALQVL 120 (681)
Q Consensus 49 gSrIivTTR~~~v~~~-~--~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~ 120 (681)
.-+||.||...+.+.. . .....+.++..+.++-.+++...+-....... .+....+++.+.|..- +|..+
T Consensus 252 ~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~--~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 252 RVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT--QKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC--HHHHHHHHHHTTTCCHHHHHHH
T ss_pred CEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCCHHHHHHH
Confidence 4456667765432211 1 23457889999999999999887744322111 2345677888888544 44443
No 207
>1utg_A Uteroglobin; steroid binding; 1.34A {Oryctolagus cuniculus} SCOP: a.101.1.1 PDB: 2utg_A
Probab=29.42 E-value=83 Score=23.66 Aligned_cols=56 Identities=14% Similarity=0.154 Sum_probs=40.3
Q ss_pred CCChhHHHHHHhhhcCCCHHHHHHHHHHhhhcCC-hhHHHHHHHHhcCCCHHHHHHHh
Q 005709 111 NGNPLALQVLGSSLYQKSKEQWKDKLRKLKLITD-PNIYKVLKISYDGLNWEEKEIFL 167 (681)
Q Consensus 111 ~GlPLai~~~g~~L~~k~~~~w~~~l~~l~~~~~-~~i~~~l~~sy~~L~~~~k~cfl 167 (681)
||.|.....+..+|.+ +.++.+..++++...+. .+-..-++-++|.|+.+.|.-+.
T Consensus 1 ~~Cpal~~~v~~~l~~-s~~~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~ 57 (70)
T 1utg_A 1 GICPRFAHVIENLLLG-TPSSYETSLKEFEPDDTMKDAGMQMKKVLDSLPQTTRENIM 57 (70)
T ss_dssp CCCHHHHHHHHHHHHS-CHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CCchhHHHHHHHHhcC-CHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5788888999999988 77777777776654332 23445677888888888776543
No 208
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=23.82 E-value=2.2e+02 Score=28.30 Aligned_cols=94 Identities=13% Similarity=0.154 Sum_probs=55.2
Q ss_pred CeEEEEEECcChh----HHHhhcCCCCCCCCcEEEEEeCCch-hhhcc-CCceEEEcCCCCHHHHHHHHHHHhccCC-CC
Q 005709 23 RKVLIVLDDVDDN----SKNFAGGLELFSPGSRIIITTRDKR-LLDKR-RVENVYEVKGLKHNSALELFCRKAFRQN-NR 95 (681)
Q Consensus 23 kr~LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTTR~~~-v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~af~~~-~~ 95 (681)
.+-++|+|+++.. .+.|...+.......++|++|.... +.... .-...+++.+++.++..+.+...+-... ..
T Consensus 110 ~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i 189 (340)
T 1sxj_C 110 GFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKL 189 (340)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCB
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCCC
Confidence 4678999999753 2222222222235667777775442 22211 1123789999999998888776652221 11
Q ss_pred ChhHHHHHHHHHHHcCCChhHHHH
Q 005709 96 SPDLLELSEEVAHYANGNPLALQV 119 (681)
Q Consensus 96 ~~~~~~~~~~i~~~c~GlPLai~~ 119 (681)
. .+....+++.++|.+--+..
T Consensus 190 ~---~~~~~~i~~~s~G~~r~~~~ 210 (340)
T 1sxj_C 190 S---PNAEKALIELSNGDMRRVLN 210 (340)
T ss_dssp C---HHHHHHHHHHHTTCHHHHHH
T ss_pred C---HHHHHHHHHHcCCCHHHHHH
Confidence 1 23456788888998775433
No 209
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=23.36 E-value=2.8e+02 Score=29.01 Aligned_cols=89 Identities=15% Similarity=0.058 Sum_probs=52.3
Q ss_pred EEEEECcChh----HHHhhcCCCCCCCCcEEEEEe---------CC----c-----hhhhccCCceEEEcCCCCHHHHHH
Q 005709 26 LIVLDDVDDN----SKNFAGGLELFSPGSRIIITT---------RD----K-----RLLDKRRVENVYEVKGLKHNSALE 83 (681)
Q Consensus 26 LiVLDdv~~~----~~~l~~~~~~~~~gSrIivTT---------R~----~-----~v~~~~~~~~~~~l~~L~~~e~~~ 83 (681)
++++|+++.. .+.|...+...... -+|+.| .+ + .+...+ ..+.+++++.++..+
T Consensus 298 VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~---~~~~~~~~~~~e~~~ 373 (456)
T 2c9o_A 298 VLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRV---MIIRTMLYTPQEMKQ 373 (456)
T ss_dssp EEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTE---EEEECCCCCHHHHHH
T ss_pred EEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhc---ceeeCCCCCHHHHHH
Confidence 8999999765 55555444433333 344344 21 1 123333 257999999999999
Q ss_pred HHHHHhc-cCCCCChhHHHHHHHHHHHc-CCChhHHHHHH
Q 005709 84 LFCRKAF-RQNNRSPDLLELSEEVAHYA-NGNPLALQVLG 121 (681)
Q Consensus 84 Lf~~~af-~~~~~~~~~~~~~~~i~~~c-~GlPLai~~~g 121 (681)
.+...+- .+.... .+....+++.+ +|-|-.+..+.
T Consensus 374 iL~~~~~~~~~~~~---~~~~~~i~~~a~~g~~r~a~~ll 410 (456)
T 2c9o_A 374 IIKIRAQTEGINIS---EEALNHLGEIGTKTTLRYSVQLL 410 (456)
T ss_dssp HHHHHHHHHTCCBC---HHHHHHHHHHHHHSCHHHHHHTH
T ss_pred HHHHHHHHhCCCCC---HHHHHHHHHHccCCCHHHHHHHH
Confidence 9987762 222222 23456677777 78777554443
No 210
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=22.06 E-value=2.1e+02 Score=28.58 Aligned_cols=66 Identities=17% Similarity=0.203 Sum_probs=39.1
Q ss_pred CCCeEEEEEECcChh-----HHHhhcCCCCCCCCcE--EEEEeCCchhh---------hccCCceEEEcCCCCHHHHHHH
Q 005709 21 QQRKVLIVLDDVDDN-----SKNFAGGLELFSPGSR--IIITTRDKRLL---------DKRRVENVYEVKGLKHNSALEL 84 (681)
Q Consensus 21 ~~kr~LiVLDdv~~~-----~~~l~~~~~~~~~gSr--IivTTR~~~v~---------~~~~~~~~~~l~~L~~~e~~~L 84 (681)
++++++||||+++.. +-.+..- .. ..+|+ ||.++-..+.. ..++ ...+++++++.+|-.++
T Consensus 130 ~~~~~ii~lDE~d~l~~q~~L~~l~~~-~~-~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~I 206 (318)
T 3te6_A 130 KKRKTLILIQNPENLLSEKILQYFEKW-IS-SKNSKLSIICVGGHNVTIREQINIMPSLKAH-FTEIKLNKVDKNELQQM 206 (318)
T ss_dssp GSCEEEEEEECCSSSCCTHHHHHHHHH-HH-CSSCCEEEEEECCSSCCCHHHHHTCHHHHTT-EEEEECCCCCHHHHHHH
T ss_pred cCCceEEEEecHHHhhcchHHHHHHhc-cc-ccCCcEEEEEEecCcccchhhcchhhhccCC-ceEEEeCCCCHHHHHHH
Confidence 456799999999764 3222210 00 12332 33445443221 1221 24789999999999999
Q ss_pred HHHHh
Q 005709 85 FCRKA 89 (681)
Q Consensus 85 f~~~a 89 (681)
+.+.+
T Consensus 207 l~~Rl 211 (318)
T 3te6_A 207 IITRL 211 (318)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98876
No 211
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=21.75 E-value=5.3e+02 Score=24.57 Aligned_cols=71 Identities=18% Similarity=0.120 Sum_probs=42.4
Q ss_pred CCcEEEEEeCCchhhhc-c--CCceEEEcCCCCHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHcCCChh-HHHHH
Q 005709 48 PGSRIIITTRDKRLLDK-R--RVENVYEVKGLKHNSALELFCRKAFRQNNRSPDLLELSEEVAHYANGNPL-ALQVL 120 (681)
Q Consensus 48 ~gSrIivTTR~~~v~~~-~--~~~~~~~l~~L~~~e~~~Lf~~~af~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~ 120 (681)
.+-.||.||...+.+.. . .....+.++..+.++-.+++...+-....... ......+++.+.|.+- ++..+
T Consensus 158 ~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 158 DRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLD--TEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp -CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSC--HHHHHHHHHHTTTCCHHHHHHH
T ss_pred CcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCCHHHHHHH
Confidence 34567778876532211 1 23457888999999988888877643222111 2345677788888775 44333
No 212
>1ccd_A Clara cell 17 KD protein; phospholipase A2 inhibitor; 3.00A {Rattus rattus} SCOP: a.101.1.1
Probab=20.41 E-value=1e+02 Score=23.70 Aligned_cols=57 Identities=26% Similarity=0.239 Sum_probs=39.5
Q ss_pred cCCChhHHHHHHhhhcCCCHHHHHHHHHHhhhcCC-hhHHHHHHHHhcCCCHHHHHHHh
Q 005709 110 ANGNPLALQVLGSSLYQKSKEQWKDKLRKLKLITD-PNIYKVLKISYDGLNWEEKEIFL 167 (681)
Q Consensus 110 c~GlPLai~~~g~~L~~k~~~~w~~~l~~l~~~~~-~~i~~~l~~sy~~L~~~~k~cfl 167 (681)
.+|.|.....+..++.+ +.++.+..++++...+. .+-..-++-++|.|+.+.|.-+.
T Consensus 2 a~iCpal~~~v~~~l~~-s~~~Y~~~l~~y~~~~~a~eA~~~lK~C~D~ls~e~r~~i~ 59 (77)
T 1ccd_A 2 SDICPGFLQVLEALLLG-SESNYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIV 59 (77)
T ss_dssp TTSCHHHHHHHHHHTTS-CHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CccchhHHHHHHHHhcC-CHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 36889999999999988 77777777766553332 22345677788888877766543
No 213
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=20.25 E-value=63 Score=28.53 Aligned_cols=60 Identities=12% Similarity=0.051 Sum_probs=34.7
Q ss_pred CCCeEEEEEECcChh---------------HHHhhcCCCCCCCCcEEEEEeCCchhhhc------c-CCceEEEcCCCCH
Q 005709 21 QQRKVLIVLDDVDDN---------------SKNFAGGLELFSPGSRIIITTRDKRLLDK------R-RVENVYEVKGLKH 78 (681)
Q Consensus 21 ~~kr~LiVLDdv~~~---------------~~~l~~~~~~~~~gSrIivTTR~~~v~~~------~-~~~~~~~l~~L~~ 78 (681)
.+++.+|||||++.. +..+.. ..+-.+|.||........ . .--..+++++++.
T Consensus 113 ~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~ 187 (195)
T 1jbk_A 113 QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-----RGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSV 187 (195)
T ss_dssp STTTEEEEEETGGGGTT------CCCCHHHHHHHHH-----TTSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCH
T ss_pred cCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc-----cCCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCH
Confidence 356789999999653 222221 134457777765542211 1 1112688999998
Q ss_pred HHHHHHH
Q 005709 79 NSALELF 85 (681)
Q Consensus 79 ~e~~~Lf 85 (681)
++..+++
T Consensus 188 ~~~~~il 194 (195)
T 1jbk_A 188 EDTIAIL 194 (195)
T ss_dssp HHHHTTC
T ss_pred HHHHHHh
Confidence 8876653
Done!