BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005711
(681 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 172 bits (436), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 191/598 (31%), Positives = 268/598 (44%), Gaps = 62/598 (10%)
Query: 63 SWVGSNCTNWT-GVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGR 121
S G+N W C G + + ++ +SG V C LEFL +SSN F+
Sbjct: 159 SISGANVVGWVLSDGC----GELKHLAISGNKISGDVDVSRCV--NLEFLDVSSNNFSTG 212
Query: 122 ISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMN 181
I G S L+ LD+S NK G AI L+ L + N +G + P + +
Sbjct: 213 I-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPL----KS 267
Query: 182 LEKLDFSFNSFCGEIPESLY-YLKSLKHLDLEKNNLTGNVHDFY---QSLLVLNLGSNRF 237
L+ L + N F GEIP+ L +L LDL N+ G V F+ L L L SN F
Sbjct: 268 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 327
Query: 238 SGTLPCFAASAM-SLTVLKLDNNSVVGGIPTCIASLQA-LTXXXXXXXXXXYEISPRLVF 295
SG LP M L VL L N G +P + +L A L I P L
Sbjct: 328 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 387
Query: 296 FEKXXXXXXXXXXX--XGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQAL 353
K G +P ++ +E LV L LS N SG IP + L L+ L
Sbjct: 388 NPKNTLQELYLQNNGFTGKIPPTLSNCSE---LVSLHLSFNYLSGTIPSSLGSLSKLRDL 444
Query: 354 FLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQ 413
L N+L GEIP + + L+ + L N L+G IP + C L + ++NN L+GEI
Sbjct: 445 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 504
Query: 414 PELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNL--- 470
+ L++L IL +SNN SG IP L +SL +D ++N +G++ A+ K +
Sbjct: 505 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA 564
Query: 471 ------KYFSIARNKL------SGNLPNWLFSFQAI---QMMDFSTNKFMGFIPDAVG-- 513
+Y I + + +GNL FQ I Q+ ST G
Sbjct: 565 NFIAGKRYVYIKNDGMKKECHGAGNL----LEFQGIRSEQLNRLSTRNPCNITSRVYGGH 620
Query: 514 -------------MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLR 559
+D+S N+L G IPK + + L LNL N + G +P + LR L
Sbjct: 621 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN 680
Query: 560 ALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGA-FAGNPNLC 616
LDLS N L G+IP +S+L LT ++LS N+ SG +P ++ FP A F NP LC
Sbjct: 681 ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLC 738
Score = 159 bits (402), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 178/629 (28%), Positives = 268/629 (42%), Gaps = 145/629 (23%)
Query: 73 TGVACNFQTGHVVSINLTDTSLSGQVHP--RLCKLSFLEFLVLSSNA--FTGRISTCFGG 128
+G C + + S++L+ SLSG V L S L+FL +SSN F G++S GG
Sbjct: 91 SGFKC---SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVS---GG 144
Query: 129 L--SGLKTLDLSYNKFVG------VVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSM 180
L + L+ LDLS N G V+ D +L+ L + GN G V +
Sbjct: 145 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELK---HLAISGNKISGDVDVSRC----V 197
Query: 181 NLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQS------LLVLNLGS 234
NLE LD S N+F IP L +L+HLD+ N L+G DF ++ L +LN+ S
Sbjct: 198 NLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSG---DFSRAISTCTELKLLNISS 253
Query: 235 NRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIA-SLQALTXXXXXXXXXXYEISPRL 293
N+F G +P SL L L N G IP ++ + LT + P
Sbjct: 254 NQFVGPIPPLPLK--SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 311
Query: 294 VFFEKXXXXXXXXXXXXGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELK----- 348
G LP + + GL +LDLS N FSGE+P +T L
Sbjct: 312 GSCSLLESLALSSNNFSGELP--MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 369
Query: 349 ----------------------SLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSG 386
+LQ L+L NN G+IP + N + L + LS N LSG
Sbjct: 370 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 429
Query: 387 SIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSL 446
+IP L +L L+ L + N + GEIP L +K+L
Sbjct: 430 TIP------------------------SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 465
Query: 447 EIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMG 506
E + N+L+G + ++ TNL + S++ N+L+G +P W+ + + ++ S N F G
Sbjct: 466 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 525
Query: 507 FIPDAVG-------MDLSDNLLHGTIPKGLFQ---------LQGLEYLNLSFNFLDGQVP 550
IP +G +DL+ NL +GTIP +F+ + G Y+ + + + +
Sbjct: 526 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH 585
Query: 551 G---LYRLRSLRA-----------------------------------LDLSHNSLTGQI 572
G L + +R+ LD+S+N L+G I
Sbjct: 586 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 645
Query: 573 PGNISSLQELTLLNLSYNSFSGFVPWKQG 601
P I S+ L +LNL +N SG +P + G
Sbjct: 646 PKEIGSMPYLFILNLGHNDISGSIPDEVG 674
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 91/306 (29%), Positives = 144/306 (47%), Gaps = 69/306 (22%)
Query: 353 LFLSNNLLIGEI-----------------------------------------------P 365
LFLSN+ + G + P
Sbjct: 79 LFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 138
Query: 366 ARIG---NLTYLQVIDLSHNMLSGSIPLNIV---GCFQLLALIVNNNNLSGEIQPELDAL 419
++ L L+V+DLS N +SG+ + V GC +L L ++ N +SG++ ++
Sbjct: 139 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRC 196
Query: 420 DSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNK 479
+L+ LD+S+N S IP L +L+ +D S N LSG + AI+ T LK +I+ N+
Sbjct: 197 VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 255
Query: 480 LSGNLPNWLFSFQAIQMMDFSTNKFMGFIPD--------AVGMDLSDNLLHGTIPKGLFQ 531
G +P +++Q + + NKF G IPD G+DLS N +G +P
Sbjct: 256 FVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 313
Query: 532 LQGLEYLNLSFNFLDGQVP--GLYRLRSLRALDLSHNSLTGQIPGNISSLQ-ELTLLNLS 588
LE L LS N G++P L ++R L+ LDLS N +G++P ++++L L L+LS
Sbjct: 314 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 373
Query: 589 YNSFSG 594
N+FSG
Sbjct: 374 SNNFSG 379
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 540 LSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIP--GNISSLQELTLLNLSYNSFSGFVP 597
LS + ++G V G SL +LDLS NSL+G + ++ S L LN+S N+
Sbjct: 81 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL----- 135
Query: 598 WKQGYQKFPGAFAG 611
FPG +G
Sbjct: 136 ------DFPGKVSG 143
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 171 bits (434), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 191/598 (31%), Positives = 268/598 (44%), Gaps = 62/598 (10%)
Query: 63 SWVGSNCTNWT-GVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGR 121
S G+N W C G + + ++ +SG V C LEFL +SSN F+
Sbjct: 162 SISGANVVGWVLSDGC----GELKHLAISGNKISGDVDVSRCV--NLEFLDVSSNNFSTG 215
Query: 122 ISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMN 181
I G S L+ LD+S NK G AI L+ L + N +G + P + +
Sbjct: 216 I-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPL----KS 270
Query: 182 LEKLDFSFNSFCGEIPESLY-YLKSLKHLDLEKNNLTGNVHDFY---QSLLVLNLGSNRF 237
L+ L + N F GEIP+ L +L LDL N+ G V F+ L L L SN F
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330
Query: 238 SGTLPCFAASAM-SLTVLKLDNNSVVGGIPTCIASLQA-LTXXXXXXXXXXYEISPRLVF 295
SG LP M L VL L N G +P + +L A L I P L
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390
Query: 296 FEKXXXXXXXXXXX--XGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQAL 353
K G +P ++ +E LV L LS N SG IP + L L+ L
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSE---LVSLHLSFNYLSGTIPSSLGSLSKLRDL 447
Query: 354 FLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQ 413
L N+L GEIP + + L+ + L N L+G IP + C L + ++NN L+GEI
Sbjct: 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507
Query: 414 PELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNL--- 470
+ L++L IL +SNN SG IP L +SL +D ++N +G++ A+ K +
Sbjct: 508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA 567
Query: 471 ------KYFSIARNKL------SGNLPNWLFSFQAI---QMMDFSTNKFMGFIPDAVG-- 513
+Y I + + +GNL FQ I Q+ ST G
Sbjct: 568 NFIAGKRYVYIKNDGMKKECHGAGNL----LEFQGIRSEQLNRLSTRNPCNITSRVYGGH 623
Query: 514 -------------MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLR 559
+D+S N+L G IPK + + L LNL N + G +P + LR L
Sbjct: 624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN 683
Query: 560 ALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGA-FAGNPNLC 616
LDLS N L G+IP +S+L LT ++LS N+ SG +P ++ FP A F NP LC
Sbjct: 684 ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLC 741
Score = 159 bits (401), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 178/629 (28%), Positives = 268/629 (42%), Gaps = 145/629 (23%)
Query: 73 TGVACNFQTGHVVSINLTDTSLSGQVHP--RLCKLSFLEFLVLSSNA--FTGRISTCFGG 128
+G C + + S++L+ SLSG V L S L+FL +SSN F G++S GG
Sbjct: 94 SGFKC---SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVS---GG 147
Query: 129 L--SGLKTLDLSYNKFVG------VVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSM 180
L + L+ LDLS N G V+ D +L+ L + GN G V +
Sbjct: 148 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELK---HLAISGNKISGDVDVSRC----V 200
Query: 181 NLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQS------LLVLNLGS 234
NLE LD S N+F IP L +L+HLD+ N L+G DF ++ L +LN+ S
Sbjct: 201 NLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSG---DFSRAISTCTELKLLNISS 256
Query: 235 NRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIA-SLQALTXXXXXXXXXXYEISPRL 293
N+F G +P SL L L N G IP ++ + LT + P
Sbjct: 257 NQFVGPIPPLPLK--SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314
Query: 294 VFFEKXXXXXXXXXXXXGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELK----- 348
G LP + + GL +LDLS N FSGE+P +T L
Sbjct: 315 GSCSLLESLALSSNNFSGELP--MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372
Query: 349 ----------------------SLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSG 386
+LQ L+L NN G+IP + N + L + LS N LSG
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432
Query: 387 SIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSL 446
+IP L +L L+ L + N + GEIP L +K+L
Sbjct: 433 TIP------------------------SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468
Query: 447 EIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMG 506
E + N+L+G + ++ TNL + S++ N+L+G +P W+ + + ++ S N F G
Sbjct: 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528
Query: 507 FIPDAVG-------MDLSDNLLHGTIPKGLFQ---------LQGLEYLNLSFNFLDGQVP 550
IP +G +DL+ NL +GTIP +F+ + G Y+ + + + +
Sbjct: 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH 588
Query: 551 G---LYRLRSLRA-----------------------------------LDLSHNSLTGQI 572
G L + +R+ LD+S+N L+G I
Sbjct: 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648
Query: 573 PGNISSLQELTLLNLSYNSFSGFVPWKQG 601
P I S+ L +LNL +N SG +P + G
Sbjct: 649 PKEIGSMPYLFILNLGHNDISGSIPDEVG 677
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 91/306 (29%), Positives = 144/306 (47%), Gaps = 69/306 (22%)
Query: 353 LFLSNNLLIGEI-----------------------------------------------P 365
LFLSN+ + G + P
Sbjct: 82 LFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141
Query: 366 ARIG---NLTYLQVIDLSHNMLSGSIPLNIV---GCFQLLALIVNNNNLSGEIQPELDAL 419
++ L L+V+DLS N +SG+ + V GC +L L ++ N +SG++ ++
Sbjct: 142 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRC 199
Query: 420 DSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNK 479
+L+ LD+S+N S IP L +L+ +D S N LSG + AI+ T LK +I+ N+
Sbjct: 200 VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258
Query: 480 LSGNLPNWLFSFQAIQMMDFSTNKFMGFIPD--------AVGMDLSDNLLHGTIPKGLFQ 531
G +P +++Q + + NKF G IPD G+DLS N +G +P
Sbjct: 259 FVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316
Query: 532 LQGLEYLNLSFNFLDGQVP--GLYRLRSLRALDLSHNSLTGQIPGNISSLQ-ELTLLNLS 588
LE L LS N G++P L ++R L+ LDLS N +G++P ++++L L L+LS
Sbjct: 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 376
Query: 589 YNSFSG 594
N+FSG
Sbjct: 377 SNNFSG 382
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 540 LSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIP--GNISSLQELTLLNLSYNSFSGFVP 597
LS + ++G V G SL +LDLS NSL+G + ++ S L LN+S N+
Sbjct: 84 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL----- 138
Query: 598 WKQGYQKFPGAFAG 611
FPG +G
Sbjct: 139 ------DFPGKVSG 146
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 119/240 (49%), Gaps = 22/240 (9%)
Query: 312 PLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNL 371
P+PS +A L + + N G IP I +L L L++++ + G IP + +
Sbjct: 67 PIPSSLANLPYLNFLYIGGI--NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124
Query: 372 TYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSL-KILDISNN 430
L +D S+N LSG++P +I L+ + + N +SG I + L + IS N
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184
Query: 431 QISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFS 490
+++G+IP T A L +L VD S N L G + N + +A+N L+
Sbjct: 185 RLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA--------- 234
Query: 491 FQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVP 550
F K +G + G+DL +N ++GT+P+GL QL+ L LN+SFN L G++P
Sbjct: 235 --------FDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 112/219 (51%), Gaps = 8/219 (3%)
Query: 406 NNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAIT 465
NNL G I P + L L L I++ +SG IP L+ +K+L +DFS N LSG+L +I+
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 466 KWTNLKYFSIARNKLSGNLPNWLFSFQAI-QMMDFSTNKFMGFIPDAVG------MDLSD 518
NL + N++SG +P+ SF + M S N+ G IP +DLS
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSR 206
Query: 519 NLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISS 578
N+L G + + ++L+ N L + + ++L LDL +N + G +P ++
Sbjct: 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266
Query: 579 LQELTLLNLSYNSFSGFVPWKQGYQKFP-GAFAGNPNLC 616
L+ L LN+S+N+ G +P Q+F A+A N LC
Sbjct: 267 LKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 119/271 (43%), Gaps = 39/271 (14%)
Query: 40 NLEDKASLLLFKSLVQDPTQKLSSWV-GSNCTN--WTGVAC--NFQTGHVVSINLTD--- 91
N +DK +LL K + +PT LSSW+ ++C N W GV C + QT V +++L+
Sbjct: 4 NPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL 62
Query: 92 ------------------------TSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFG 127
+L G + P + KL+ L +L ++ +G I
Sbjct: 63 PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122
Query: 128 GLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDF 187
+ L TLD SYN G +P +I L NL + GN + G P G+FS +
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAIPDSYGSFSKLFTSMTI 181
Query: 188 SFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQS---LLVLNLGSNRFSGTLPCF 244
S N G+IP + L +L +DL +N L G+ + S ++L N + L
Sbjct: 182 SRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV 240
Query: 245 AASAMSLTVLKLDNNSVVGGIPTCIASLQAL 275
S +L L L NN + G +P + L+ L
Sbjct: 241 GLSK-NLNGLDLRNNRIYGTLPQGLTQLKFL 270
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 74/180 (41%), Gaps = 35/180 (19%)
Query: 70 TNWTGVACNF--QTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFG 127
TN +G +F Q +V+++ + +LSG + P + L L + N +G I +G
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170
Query: 128 GLSGLKT-LDLSYNKFVGVVPDAIMKL-----------------------RNLRELILKG 163
S L T + +S N+ G +P L +N +++ L
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230
Query: 164 NP---ELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNV 220
N +LG V S NL LD N G +P+ L LK L L++ NNL G +
Sbjct: 231 NSLAFDLGKV------GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 85 VSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVG 144
S+ ++ L+G++ P L+ L F+ LS N G S FG + + L+ N
Sbjct: 177 TSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235
Query: 145 VVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPE 198
+ + +NL L L+ N + G P + L L+ SFN+ CGEIP+
Sbjct: 236 DLGKVGLS-KNLNGLDLRNN-RIYGTLPQGLTQLKF-LHSLNVSFNNLCGEIPQ 286
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 91/198 (45%), Gaps = 19/198 (9%)
Query: 416 LDALDSLKILDISNNQISGE--IPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYF 473
L+ L++L+ LD+S++ I L L L+ L+ ++ S N G + A + L+
Sbjct: 345 LEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELL 404
Query: 474 SIARNKLSGNLPNWLFSFQAIQMM----------DFSTNKFMGFIPDAVGMDLSDNLLH- 522
+A L P+ FQ + ++ D S + + D ++L N
Sbjct: 405 DVAFTHLHVKAPHS--PFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQD 462
Query: 523 GTIPK-GLFQLQG-LEYLNLS-FNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSL 579
G+I K L Q+ G LE L LS N L + LR++ LDLSHNSLTG +S L
Sbjct: 463 GSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHL 522
Query: 580 QELTLLNLSYNSFSGFVP 597
+ L LN++ N+ P
Sbjct: 523 KGL-YLNMASNNIRIIPP 539
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 3/137 (2%)
Query: 126 FGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNP-ELGGVFPGWVGNFSMNLEK 184
F L L+ L+LS+ + L++LR L L+GN + G + + +LE
Sbjct: 420 FQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEI 479
Query: 185 LDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSL--LVLNLGSNRFSGTLP 242
L S + ++ + L+++ HLDL N+LTG+ D L L LN+ SN P
Sbjct: 480 LILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGLYLNMASNNIRIIPP 539
Query: 243 CFAASAMSLTVLKLDNN 259
+ +++ L +N
Sbjct: 540 HLLPALSQQSIINLSHN 556
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 92/224 (41%), Gaps = 43/224 (19%)
Query: 372 TYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQ 431
T +Q +DL+ L+G +P I G L L++N N+ Q + SL+ L I N
Sbjct: 277 TRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNM 335
Query: 432 ISGEI-PLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFS 490
++ L L++L+ +D S +++ S NL+ L +
Sbjct: 336 RKLDLGTRCLEKLENLQKLDLSHSDIEAS------DCCNLQ----------------LKN 373
Query: 491 FQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVP 550
+ +Q ++ S N+ +G A + LE L+++F L + P
Sbjct: 374 LRHLQYLNLSYNEPLGLEDQAFK-----------------ECPQLELLDVAFTHLHVKAP 416
Query: 551 G--LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSF 592
L LR L+LSH L ++ LQ+L LNL NSF
Sbjct: 417 HSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSF 460
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%)
Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNL 156
LE L+LSS F GL + LDLS+N G DA+ L+ L
Sbjct: 477 LEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL 525
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNML 384
LDLSHN +G+ ++ LK L SNN+ I P + L+ +I+LSHN L
Sbjct: 504 LDLSHNSLTGDSMDALSHLKGLYLNMASNNIRIIP-PHLLPALSQQSIINLSHNPL 558
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 94/196 (47%), Gaps = 19/196 (9%)
Query: 419 LDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLS--GSLNDAITKWTNLKYFSIA 476
L SLK L ++N+ G + L SLE +D S N LS G + + T+LKY ++
Sbjct: 324 LKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381
Query: 477 RNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPK--------G 528
N + N+L + ++ +DF + +V + L NL++ I G
Sbjct: 382 FNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLR-NLIYLDISHTHTRVAFNG 439
Query: 529 LFQ-LQGLEYLNLSFN-FLDGQVPGLY-RLRSLRALDLSHNSLTGQIPGNISSLQELTLL 585
+F L LE L ++ N F + +P ++ LR+L LDLS L P +SL L +L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499
Query: 586 NLSYNSFSGF--VPWK 599
N+S+N+F P+K
Sbjct: 500 NMSHNNFFSLDTFPYK 515
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 9/140 (6%)
Query: 372 TYLQVIDLSHNMLSGSIPL--NIVGCFQLLALIVNNNNLS--GEIQPELDALDSLKILDI 427
T L+ +DLS N G I + N +G QL L ++NL E L +L +L LDI
Sbjct: 373 TSLKYLDLSFN---GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL-SLRNLIYLDI 428
Query: 428 SNNQISGEIPLTLAGLKSLEIVDFSSNNLSGS-LNDAITKWTNLKYFSIARNKLSGNLPN 486
S+ GL SLE++ + N+ + L D T+ NL + +++ +L P
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488
Query: 487 WLFSFQAIQMMDFSTNKFMG 506
S ++Q+++ S N F
Sbjct: 489 AFNSLSSLQVLNMSHNNFFS 508
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 82/346 (23%), Positives = 133/346 (38%), Gaps = 94/346 (27%)
Query: 344 ITELKSLQALFLSNNLLIG-EIPARIGNLTYLQVIDLSHNMLSG---------------- 386
I LK+L+ L +++NL+ ++P NLT L+ +DLS N +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179
Query: 387 ------SIPLNIV--GCFQLLAL----IVNNNNLSGEIQPELDALDSLKILDISNNQISG 434
P+N + G F+ + L + NN + ++ + L L++ + +
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239
Query: 435 EIPL------TLAGLKSLEIVDFSSNNLSGSLNDAITKW---TNLKYFSIARNKLS---- 481
E L L GL +L I +F L L+D I + TN+ FS+ +
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD 299
Query: 482 -----------------GNLPNWLFSFQAIQMMDFSTNK----FMGF-IPDAVGMDLSDN 519
G P ++++ + F++NK F +P +DLS N
Sbjct: 300 FSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN 357
Query: 520 LL--HGTIPKGLFQLQGLEYLNLSFN----------------FLDGQVPGLYR------- 554
L G + F L+YL+LSFN LD Q L +
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 417
Query: 555 --LRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSF-SGFVP 597
LR+L LD+SH G + L L +L ++ NSF F+P
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 65/163 (39%), Gaps = 38/163 (23%)
Query: 108 LEFLVLSSN--AFTGRISTCFGGLSGLKTLDLSYN-------KFVGVVP----------- 147
LEFL LS N +F G S G + LK LDLS+N F+G+
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 408
Query: 148 ------DAIMKLRNLRELILKGNP---ELGGVFPGWVGNFSMNLEKLDFSFNSFCGE-IP 197
+ LRNL L + G+F G LE L + NSF +P
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-----LEVLKMAGNSFQENFLP 463
Query: 198 ESLYYLKSLKHLDLEK---NNLTGNVHDFYQSLLVLNLGSNRF 237
+ L++L LDL + L+ + SL VLN+ N F
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
LS L L+L+ N F GLS L+ L + I L+ L+EL + N
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134
Query: 165 PELGGVFPGWVGNFSMNLEKLDFSFN 190
P + N + NLE LD S N
Sbjct: 135 LIQSFKLPEYFSNLT-NLEHLDLSSN 159
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 54/131 (41%), Gaps = 27/131 (20%)
Query: 111 LVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELG-- 168
L LS N S F L+ LDLS + + A L +L LIL GNP
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 169 -GVFPGW---------------VGNFSM----NLEKLDFSFN---SFCGEIPESLYYLKS 205
G F G + NF + L++L+ + N SF ++PE L +
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF--KLPEYFSNLTN 150
Query: 206 LKHLDLEKNNL 216
L+HLDL N +
Sbjct: 151 LEHLDLSSNKI 161
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 119/284 (41%), Gaps = 17/284 (5%)
Query: 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSI 388
L+L +RFS LQ L L+ L G +P+ + L L+ + LS N
Sbjct: 256 LNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLC 314
Query: 389 PLNIVGCFQLLALIVNNNNLSGEIQPE-LDALDSLKILDISNNQISGE--IPLTLAGLKS 445
++ L L + N + L+ L +L+ LD+S+N I L L L
Sbjct: 315 QISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSH 374
Query: 446 LEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFS----FQAIQM----M 497
L+ ++ S N G + A + L+ +A +L N P F Q + + +
Sbjct: 375 LQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFL 434
Query: 498 DFSTNKFMGFIPDAVGMDLSDNLLH-GTIPK-GLFQLQG-LEYLNLS-FNFLDGQVPGLY 553
D S + +P ++L N GTI K L Q G LE L LS L +
Sbjct: 435 DTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFH 494
Query: 554 RLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVP 597
L + +DLSHNSLT ++S L+ + LNL+ NS + P
Sbjct: 495 SLGKMSHVDLSHNSLTCDSIDSLSHLKGI-YLNLAANSINIISP 537
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 79/201 (39%), Gaps = 34/201 (16%)
Query: 74 GVACNFQTGHVVSINLT--DTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSG 131
GV C + G++ +++L+ D S +L LS L+ L LS N G S F
Sbjct: 339 GVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQ 398
Query: 132 LKTLDLSYNKFVGVVPDA-------------------------IMKLRNLRELILKGNPE 166
L+ LDL++ + P + + L LR L LKGN
Sbjct: 399 LELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHF 458
Query: 167 LGGVFPGWVGNFSMNLEKLDFSFNSFCGEIP---ESLYYLKSLKHLDLEKNNLTGNVHDF 223
G N + L+ S CG + ++ + L + H+DL N+LT + D
Sbjct: 459 QDGTITK--TNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDS 516
Query: 224 YQSL--LVLNLGSNRFSGTLP 242
L + LNL +N + P
Sbjct: 517 LSHLKGIYLNLAANSINIISP 537
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 21/230 (9%)
Query: 344 ITELKSLQALFLSNNLLIGE--IPARIGNLTYLQVIDLSHNMLSGSIPLNIVGC--FQLL 399
+ +L +LQ L LS+N + ++ NL++LQ ++LSHN G C +LL
Sbjct: 343 LEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELL 402
Query: 400 ALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGS 459
L +++ P L L++L+++ + LAGL L ++ N+
Sbjct: 403 DLAFTRLHINAPQSP-FQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQ-- 459
Query: 460 LNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDN 519
+ ITK TNL + G+L + S + +D +G + +DLS N
Sbjct: 460 -DGTITK-TNLL-------QTVGSLEVLILSSCGLLSIDQQAFHSLGKMSH---VDLSHN 507
Query: 520 LLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRA-LDLSHNSL 568
L L L+G+ YLNL+ N ++ P L + S ++ ++LSHN L
Sbjct: 508 SLTCDSIDSLSHLKGI-YLNLAANSINIISPRLLPILSQQSTINLSHNPL 556
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
Query: 350 LQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQL 398
L L+L+ N L E+PA I NL+ L+V+DLSHN L+ S+P + CFQL
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQL 295
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 513 GMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQI 572
+DLS NL I +F+ L L L+ N L + L +LR LDLSHN LT +
Sbjct: 228 ALDLS-NLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-L 285
Query: 573 PGNISSLQELTLLNLSYNSFSGFVPWKQG 601
P + S +L +++ +PW+ G
Sbjct: 286 PAELGSCFQLKYFYF-FDNMVTTLPWEFG 313
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 313 LPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLT 372
LP++I + L +LDLSHNR + +P ++ L+ + +N ++ +P GNL
Sbjct: 262 LPAEIKNL---SNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLC 316
Query: 373 YLQVIDLSHNMLS 385
LQ + + N L
Sbjct: 317 NLQFLGVEGNPLE 329
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 90/187 (48%), Gaps = 17/187 (9%)
Query: 419 LDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLS--GSLNDAITKWTNLKYFSIA 476
L SLK L ++N+ G + L SLE +D S N LS G + + +LKY ++
Sbjct: 348 LKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLS 405
Query: 477 RNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPK--------G 528
N + N+L + ++ +DF + +V + L NL++ I G
Sbjct: 406 FNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLR-NLIYLDISHTHTRVAFNG 463
Query: 529 LFQ-LQGLEYLNLSFN-FLDGQVPGLY-RLRSLRALDLSHNSLTGQIPGNISSLQELTLL 585
+F L LE L ++ N F + +P ++ LR+L LDLS L P +SL L +L
Sbjct: 464 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 523
Query: 586 NLSYNSF 592
N+S+N+F
Sbjct: 524 NMSHNNF 530
Score = 35.4 bits (80), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 9/138 (6%)
Query: 374 LQVIDLSHNMLSGSIPL--NIVGCFQLLALIVNNNNLS--GEIQPELDALDSLKILDISN 429
L+ +DLS N G I + N +G QL L ++NL E L +L +L LDIS+
Sbjct: 399 LKYLDLSFN---GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL-SLRNLIYLDISH 454
Query: 430 NQISGEIPLTLAGLKSLEIVDFSSNNLSGS-LNDAITKWTNLKYFSIARNKLSGNLPNWL 488
GL SLE++ + N+ + L D T+ NL + +++ +L P
Sbjct: 455 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 514
Query: 489 FSFQAIQMMDFSTNKFMG 506
S ++Q+++ S N F
Sbjct: 515 NSLSSLQVLNMSHNNFFS 532
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
LS L L+L+ N F GLS L+ L + I L+ L+EL + N
Sbjct: 99 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 158
Query: 165 PELGGVFPGWVGNFSMNLEKLDFSFN 190
P + N + NLE LD S N
Sbjct: 159 LIQSFKLPEYFSNLT-NLEHLDLSSN 183
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 54/131 (41%), Gaps = 27/131 (20%)
Query: 111 LVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELG-- 168
L LS N S F L+ LDLS + + A L +L LIL GNP
Sbjct: 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 116
Query: 169 -GVFPGW---------------VGNFSM----NLEKLDFSFN---SFCGEIPESLYYLKS 205
G F G + NF + L++L+ + N SF ++PE L +
Sbjct: 117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF--KLPEYFSNLTN 174
Query: 206 LKHLDLEKNNL 216
L+HLDL N +
Sbjct: 175 LEHLDLSSNKI 185
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 324 AGLVLLDLSHNRFSGE-IPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHN 382
+ L +L ++ N F +P TEL++L L LS L P +L+ LQV+++SHN
Sbjct: 469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 528
Query: 383 MLSG--SIPLNIVGCFQLLALIVNN 405
+ P + Q+L +N+
Sbjct: 529 NFFSLDTFPYKCLNSLQVLDYSLNH 553
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 104/239 (43%), Gaps = 27/239 (11%)
Query: 370 NLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPE--LDALDSLKILDI 427
NL L+++DL + + P G F L L + LS + + L +L LD+
Sbjct: 71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL 130
Query: 428 SNNQI-SGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAIT--KWTNLKYFSIARNKLSGNL 484
S NQI S + + L SL+ +DFSSN + + + L +FS+A N L +
Sbjct: 131 SKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV 190
Query: 485 P-NW-----LFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQL-QGLEY 537
+W F ++++D S N + +D++ N + F L
Sbjct: 191 SVDWGKCMNPFRNMVLEILDVSGNGWT--------VDITGNFSNAISKSQAFSLILAHHI 242
Query: 538 LNLSFNFLDGQVP------GLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYN 590
+ F F + + P GL R S+R LDLSH + +L++L +LNL+YN
Sbjct: 243 MGAGFGFHNIKDPDQNTFAGLAR-SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN 300
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 80/342 (23%), Positives = 145/342 (42%), Gaps = 63/342 (18%)
Query: 323 KAGLVLLDLSHNRFSGEIPLKITE-LKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSH 381
++ + LDLSH F + ++ E LK L+ L L+ N + L LQV++LS+
Sbjct: 265 RSSVRHLDLSHG-FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323
Query: 382 NMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLA 441
N+L N G ++ + + N+++ L+ L+ LD+ +N ++ T+
Sbjct: 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIH 378
Query: 442 GLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSG-NLPNWLFSFQAIQMMDFS 500
+ S+ + S N L +T NL + S N+L ++ +L +Q++ +
Sbjct: 379 FIPSIPDIFLSGNKLVTLPKINLT--ANLIHLS--ENRLENLDILYFLLRVPHLQILILN 434
Query: 501 TNKFMGFIPDAVGMD--------LSDNLLHGTIPKGL----FQ-LQGLEYLNLSFNFLDG 547
N+F D + L +N+L L F+ L L+ L L+ N+L+
Sbjct: 435 QNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS 494
Query: 548 QVPGLY-RLRSLRALDLSHNSLT----GQIPGNISSLQ---------------ELTLLNL 587
PG++ L +LR L L+ N LT +P N+ L L++L++
Sbjct: 495 LPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDI 554
Query: 588 SYNSF------SGFVPW------------KQGYQKFPGAFAG 611
++N F S F+ W Y +P +F+G
Sbjct: 555 THNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSG 596
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 84/325 (25%), Positives = 132/325 (40%), Gaps = 49/325 (15%)
Query: 123 STCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFS--M 180
S F L LK L+L+YNK + +A L NL+ L L N LG ++ NF
Sbjct: 283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL-LGELYS---SNFYGLP 338
Query: 181 NLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGT 240
+ +D N ++ +L+ L+ LDL N LT +H F S+ + L N+ T
Sbjct: 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-TIH-FIPSIPDIFLSGNKLV-T 395
Query: 241 LPC--FAASAMSLTVLKLDNNSVVGGIPTCIASLQALTXXXXXXXXXXYEISPRLVFFEK 298
LP A+ + L+ +L+N ++ + + LQ L + +P
Sbjct: 396 LPKINLTANLIHLSENRLENLDILYFLLR-VPHLQILILNQNRFSSCSGDQTP------- 447
Query: 299 XXXXXXXXXXXXGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNN 358
G ++A TE V LSH LQ L+L++N
Sbjct: 448 -SENPSLEQLFLGENMLQLAWETELCWDVFEGLSH----------------LQVLYLNHN 490
Query: 359 LLIGEIPARIGNLTYLQVIDLSHNMLS----GSIPLNIVGCFQLLALIVNNNNLSGEIQP 414
L P +LT L+ + L+ N L+ +P N L L ++ N L + P
Sbjct: 491 YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPAN------LEILDISRNQL---LAP 541
Query: 415 ELDALDSLKILDISNNQISGEIPLT 439
D SL +LDI++N+ E L+
Sbjct: 542 NPDVFVSLSVLDITHNKFICECELS 566
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 74/172 (43%), Gaps = 11/172 (6%)
Query: 423 KILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSG 482
++L++ NQI + L+ LEI+ S N++ A NL + N+L+
Sbjct: 67 RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT- 125
Query: 483 NLPNWLFSF-QAIQMMDFSTNKFMGF-------IPDAVGMDLSDNLLHGTIPKGLFQ-LQ 533
+PN F + ++ + N IP +DL + I +G F+ L
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185
Query: 534 GLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLL 585
L YLNL+ L ++P L L L LDLS N L+ PG+ L L L
Sbjct: 186 NLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKL 236
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 51/114 (44%), Gaps = 3/114 (2%)
Query: 104 KLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKG 163
L LE L LS N F GL+ L TL+L N+ + A + L L+EL L+
Sbjct: 86 HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 145
Query: 164 NPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYY-LKSLKHLDLEKNNL 216
NP P + N +L +LD I E + L +L++L+L NL
Sbjct: 146 NPIES--IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 90/213 (42%), Gaps = 41/213 (19%)
Query: 419 LDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARN 478
L L+IL +S N I GL +L ++ N L+ N A + LK + N
Sbjct: 87 LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN 146
Query: 479 KLSGNLPNWLFS-FQAIQMMDFSTNKFMGFIPDAVGMDLSD----NLLHGTIPK--GLFQ 531
+ +P++ F+ +++ +D K + +I + LS+ NL + + L
Sbjct: 147 PIES-IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTP 205
Query: 532 LQGLEYLNLSFNFLDGQVPGLYR-------------------------LRSLRALDLSHN 566
L L+ L+LS N L PG ++ L+SL ++L+HN
Sbjct: 206 LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265
Query: 567 SLTGQIPGNI-SSLQELTLLNLSYNSFSGFVPW 598
+LT +P ++ + L L ++L +N PW
Sbjct: 266 NLT-LLPHDLFTPLHHLERIHLHHN------PW 291
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 126 FGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKL 185
F GLS L+ L+L+ + P+ + L L EL L GN L + PG M+L+KL
Sbjct: 181 FEGLSNLRYLNLAMCNLREI-PN-LTPLIKLDELDLSGN-HLSAIRPGSFQGL-MHLQKL 236
Query: 186 DFSFNSFCGEIPESLY-YLKSLKHLDLEKNNLTGNVHDFYQSL 227
+ S I + + L+SL ++L NNLT HD + L
Sbjct: 237 -WMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 17/185 (9%)
Query: 419 LDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLS--GSLNDAITKWTNLKYFSIA 476
L SLK L ++N+ G + L SLE +D S N LS G + + T+LKY ++
Sbjct: 324 LKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381
Query: 477 RNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPK--------G 528
N + N+L + ++ +DF + +V + L NL++ I G
Sbjct: 382 FNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLR-NLIYLDISHTHTRVAFNG 439
Query: 529 LFQ-LQGLEYLNLSFN-FLDGQVPGLY-RLRSLRALDLSHNSLTGQIPGNISSLQELTLL 585
+F L LE L ++ N F + +P ++ LR+L LDLS L P +SL L +L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499
Query: 586 NLSYN 590
N++ N
Sbjct: 500 NMASN 504
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 10/146 (6%)
Query: 372 TYLQVIDLSHNMLSGSIPL--NIVGCFQLLALIVNNNNLS--GEIQPELDALDSLKILDI 427
T L+ +DLS N G I + N +G QL L ++NL E L +L +L LDI
Sbjct: 373 TSLKYLDLSFN---GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL-SLRNLIYLDI 428
Query: 428 SNNQISGEIPLTLAGLKSLEIVDFSSNNLSGS-LNDAITKWTNLKYFSIARNKLSGNLPN 486
S+ GL SLE++ + N+ + L D T+ NL + +++ +L P
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488
Query: 487 WLFSFQAIQMMDFSTNKFMGFIPDAV 512
S ++Q+++ ++N+ +PD +
Sbjct: 489 AFNSLSSLQVLNMASNQLKS-VPDGI 513
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 15/165 (9%)
Query: 421 SLKILDISNNQISGEIPLT--LAGLKSLEIVDFSSNNLSG-SLNDAITKWTNLKYFSIAR 477
SLK LD+S N G I ++ GL+ LE +DF +NL S NL Y I+
Sbjct: 374 SLKYLDLSFN---GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430
Query: 478 NKLSGNLPNWLFSFQAIQMMDFSTNKFM-GFIPDAVG-------MDLSDNLLHGTIPKGL 529
+++++ + N F F+PD +DLS L P
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490
Query: 530 FQLQGLEYLNLSFNFLDGQVPGLY-RLRSLRALDLSHNSLTGQIP 573
L L+ LN++ N L G++ RL SL+ + L N P
Sbjct: 491 NSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 73/313 (23%), Positives = 125/313 (39%), Gaps = 69/313 (22%)
Query: 344 ITELKSLQALFLSNNLLIG-EIPARIGNLTYLQVIDLSHNMLSG---------------- 386
I LK+L+ L +++NL+ ++P NLT L+ +DLS N +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179
Query: 387 ------SIPLNIV--GCFQLLAL----IVNNNNLSGEIQPELDALDSLKILDISNNQISG 434
P+N + G F+ + L + NN + ++ + L L++ + +
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239
Query: 435 EIPL------TLAGLKSLEIVDFSSNNLSGSLNDAITKW---TNLKYFSIARNKLS---- 481
E L L GL +L I +F L L+D I + TN+ FS+ +
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD 299
Query: 482 -----------------GNLPNWLFSFQAIQMMDFSTNK----FMGF-IPDAVGMDLSDN 519
G P ++++ + F++NK F +P +DLS N
Sbjct: 300 FSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN 357
Query: 520 LL--HGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNIS 577
L G + F L+YL+LSFN + L L LD H++L ++
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 417
Query: 578 -SLQELTLLNLSY 589
SL+ L L++S+
Sbjct: 418 LSLRNLIYLDISH 430
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 66/162 (40%), Gaps = 38/162 (23%)
Query: 108 LEFLVLSSN--AFTGRISTCFGGLSGLKTLDLSYN-------KFVGVVP----------- 147
LEFL LS N +F G S G + LK LDLS+N F+G+
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 408
Query: 148 ------DAIMKLRNLRELILKGNP---ELGGVFPGWVGNFSMNLEKLDFSFNSFCGE-IP 197
+ LRNL L + G+F G LE L + NSF +P
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-----LEVLKMAGNSFQENFLP 463
Query: 198 ESLYYLKSLKHLDLEK---NNLTGNVHDFYQSLLVLNLGSNR 236
+ L++L LDL + L+ + SL VLN+ SN+
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
LS L L+L+ N F GLS L+ L + I L+ L+EL + N
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134
Query: 165 PELGGVFPGWVGNFSMNLEKLDFSFN 190
P + N + NLE LD S N
Sbjct: 135 LIQSFKLPEYFSNLT-NLEHLDLSSN 159
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 104 KLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIM-KLRNLRELILK 162
+L L FL LS T F LS L+ L+++ N+ + VPD I +L +L+++ L
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLH 526
Query: 163 GNP 165
NP
Sbjct: 527 TNP 529
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 54/131 (41%), Gaps = 27/131 (20%)
Query: 111 LVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELG-- 168
L LS N S F L+ LDLS + + A L +L LIL GNP
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 169 -GVFPGW---------------VGNFSM----NLEKLDFSFN---SFCGEIPESLYYLKS 205
G F G + NF + L++L+ + N SF ++PE L +
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF--KLPEYFSNLTN 150
Query: 206 LKHLDLEKNNL 216
L+HLDL N +
Sbjct: 151 LEHLDLSSNKI 161
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 22/142 (15%)
Query: 435 EIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWT-NLKYFSIARNKLSGNLPNWLFSFQA 493
++ L + SLE +D S N+L+ D W ++ +++ N L+G++
Sbjct: 394 KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV--------- 444
Query: 494 IQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLY 553
F P +DL +N + +IPK + LQ L+ LN++ N L G++
Sbjct: 445 ----------FRCLPPKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLKSVPDGVF 493
Query: 554 -RLRSLRALDLSHNSLTGQIPG 574
RL SL+ + L N PG
Sbjct: 494 DRLTSLQYIWLHDNPWDCTCPG 515
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 83/217 (38%), Gaps = 61/217 (28%)
Query: 324 AGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIG--EIPARIGNLTYLQVID--- 378
+ L+ + N F+ + + LK LQ L L N L ++ N++ L+ +D
Sbjct: 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412
Query: 379 ----------------------LSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPEL 416
LS NML+GS+ F+ L
Sbjct: 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSV-------FRCLP---------------- 449
Query: 417 DALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIA 476
+K+LD+ NN+I IP + L++L+ ++ +SN L + + T+L+Y +
Sbjct: 450 ---PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLH 505
Query: 477 RNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVG 513
N W + I+ + NK G + ++ G
Sbjct: 506 DNP-------WDCTCPGIRYLSEWINKHSGVVRNSAG 535
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 533 QGLEYLNLSFNFLDGQVPGLYRL--RSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYN 590
+ + LNLS N L G V +R ++ LDL HN+ IP +++ LQ L LN++ N
Sbjct: 428 ESILVLNLSSNMLTGSV---FRCLPPKVKVLDL-HNNRIMSIPKDVTHLQALQELNVASN 483
Query: 591 SFSG 594
Sbjct: 484 QLKS 487
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
L LE L LS N F GL L TL+L N+ V A L LREL L+ N
Sbjct: 58 LRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNN 117
Query: 165 PELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYY-LKSLKHLDLEKNNL 216
P P + N +L +LD I E+ + L +L++L+L NL
Sbjct: 118 PIES--IPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNL 168
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 87/219 (39%), Gaps = 53/219 (24%)
Query: 419 LDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARN 478
L L+IL +S N + GL SL ++ N L+ A + L+ + N
Sbjct: 58 LRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNN 117
Query: 479 KLSGNLPNWLFS-FQAIQMMDFSTNKFMGFIPDA------------VGM-DLSDNLLHGT 524
+ +P++ F+ +++ +D K + +I +A +GM +L D
Sbjct: 118 PIES-IPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKD------ 170
Query: 525 IPKGLFQLQGLEYLNLSFNFLDGQVPGLYR-------------------------LRSLR 559
IP L L LE L LS N LD PG ++ L+SL
Sbjct: 171 IP-NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLE 229
Query: 560 ALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPW 598
L+LSHN+L + L L ++L++N PW
Sbjct: 230 ELNLSHNNLMSLPHDLFTPLHRLERVHLNHN------PW 262
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
L LE L LS N F GL L TL+L N+ V A L LREL L+ N
Sbjct: 58 LRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNN 117
Query: 165 PELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYY-LKSLKHLDLEKNNL 216
P P + N +L +LD I E+ + L +L++L+L NL
Sbjct: 118 P--IESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNL 168
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 87/219 (39%), Gaps = 53/219 (24%)
Query: 419 LDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARN 478
L L+IL +S N + GL SL ++ N L+ A + L+ + N
Sbjct: 58 LRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNN 117
Query: 479 KLSGNLPNWLFS-FQAIQMMDFSTNKFMGFIPDA------------VGM-DLSDNLLHGT 524
+ +P++ F+ +++ +D K + +I +A +GM +L D
Sbjct: 118 PIES-IPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKD------ 170
Query: 525 IPKGLFQLQGLEYLNLSFNFLDGQVPGLYR-------------------------LRSLR 559
IP L L LE L LS N LD PG ++ L+SL
Sbjct: 171 IP-NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLE 229
Query: 560 ALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPW 598
L+LSHN+L + L L ++L++N PW
Sbjct: 230 ELNLSHNNLMSLPHDLFTPLHRLERVHLNHN------PW 262
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 65/153 (42%), Gaps = 10/153 (6%)
Query: 340 IPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLL 399
IP +TEL +L N +P + N +L +IDLS+N +S + QLL
Sbjct: 29 IPRDVTEL------YLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL 81
Query: 400 ALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGS 459
LI++ N L D L SL++L + N IS L +L + +N L
Sbjct: 82 TLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141
Query: 460 LN-DAITKWTNLKYFS--IARNKLSGNLPNWLF 489
N ++ W +Y IAR G + + L
Sbjct: 142 CNMQWLSDWVKSEYKEPGIARCAGPGEMADKLL 174
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%)
Query: 98 VHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLR 157
V L L + LS+N + + F ++ L TL LSYN+ + P L++LR
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 158 ELILKGN 164
L L GN
Sbjct: 106 LLSLHGN 112
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 436 IPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQ 495
+P L+ K L ++D S+N +S N + + T L ++ N+L P ++++
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 496 MMDFSTNKFMGFIPDAVGMDLS 517
++ N + +P+ DLS
Sbjct: 106 LLSLHGND-ISVVPEGAFNDLS 126
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 4/126 (3%)
Query: 358 NLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPEL- 416
+L + ++P + T + V++L+HN L N QL +L V N +S +++PEL
Sbjct: 18 HLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS-KLEPELC 74
Query: 417 DALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIA 476
L LK+L++ +N++S T A +L + SN++ N+ K NL ++
Sbjct: 75 QKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLS 134
Query: 477 RNKLSG 482
N LS
Sbjct: 135 HNGLSS 140
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 105/437 (24%), Positives = 162/437 (37%), Gaps = 65/437 (14%)
Query: 76 ACNFQTGHVVSINLTDTSLSGQVHPRLC---KLSFLEFLVLSSNAFTGRISTCFGGL--S 130
C G + + L + L + +LC + + L LS++ + +T F GL +
Sbjct: 194 GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWT 253
Query: 131 GLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN-------PELGGVFPGWVGNFSMNLE 183
L LDLSYN V D+ L L L+ N L G+F N +
Sbjct: 254 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 313
Query: 184 KLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGS--NRFSG-- 239
K S S S +LK L+HL++E N++ G + + L+ L S N F+
Sbjct: 314 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 373
Query: 240 --TLPCFAASAMS-LTVLKLDNNSV----------VGGIPTCIASL----QALTXXXXXX 282
T F + A S L +L L N + +G + L Q LT
Sbjct: 374 TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG 433
Query: 283 XXXXYEISPRLVFFEKXXXXXXXXXXXXGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPL 342
+EI + +PS + L +D S P
Sbjct: 434 LENIFEI------YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS--------PS 479
Query: 343 KITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALI 402
L++L L LSNN + + L L+++DL HN L A +
Sbjct: 480 PFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL---------------ARL 524
Query: 403 VNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTL-AGLKSLEIVDFSSNNLSGSLN 461
+ N G I L L L IL++ +N EIP+ + L L+I+D NNL+
Sbjct: 525 WKHANPGGPIY-FLKGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNTLPA 582
Query: 462 DAITKWTNLKYFSIARN 478
+LK ++ +N
Sbjct: 583 SVFNNQVSLKSLNLQKN 599
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 120/522 (22%), Positives = 202/522 (38%), Gaps = 59/522 (11%)
Query: 111 LVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGV 170
L L+ N + F S L +LD+ +N + P+ KL L+ L L+ N EL +
Sbjct: 35 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQL 93
Query: 171 FPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGN---VHDFYQSL 227
F NL +L NS K+L LDL N L+ ++L
Sbjct: 94 SDKTFA-FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENL 152
Query: 228 LVLNLGSNRF----SGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTXXXXXXX 283
L L +N+ S L FA S SL L+L +N + P C ++ L
Sbjct: 153 QELLLSNNKIQALKSEELDIFANS--SLKKLELSSNQIKEFSPGCFHAIGRL----FGLF 206
Query: 284 XXXYEISPRLVFFEKXXXXXXXXXXXXGPLPSKIAQTTEKA--------GLVLLDLSHNR 335
++ P L EK L + TT L +LDLS+N
Sbjct: 207 LNNVQLGPSLT--EKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 264
Query: 336 FSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVG- 394
+ L L+ FL N + + L ++ ++L + SI L +
Sbjct: 265 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 324
Query: 395 ----CFQLLA----LIVNNNNLSGEIQPELDALDSLKILDISNN-----QISGEIPLTLA 441
FQ L L + +N++ G L +LK L +SN+ ++ E ++LA
Sbjct: 325 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 384
Query: 442 GLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLP--NWLFSFQAIQMMDF 499
L I++ + N +S +DA + +L+ + N++ L W + I +
Sbjct: 385 H-SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR-GLENIFEIYL 442
Query: 500 STNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLR 559
S NK++ ++ + +P LQ L ++ +D LR+L
Sbjct: 443 SYNKYLQLTRNSFAL----------VPS----LQRLMLRRVALKNVDSSPSPFQPLRNLT 488
Query: 560 ALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQG 601
LDLS+N++ + L++L +L+L +N+ + WK
Sbjct: 489 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL--WKHA 528
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 56/134 (41%), Gaps = 6/134 (4%)
Query: 84 VVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFV 143
V I LT L H L L+ L+L SN T + F GLS ++ L L N+
Sbjct: 83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT 142
Query: 144 GVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYL 203
V P A L +L L L NP + W+G + +K + N C + Y+L
Sbjct: 143 TVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLR--KKRIVTGNPRC----QKPYFL 196
Query: 204 KSLKHLDLEKNNLT 217
K + D+ + T
Sbjct: 197 KEIPIQDVAIQDFT 210
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 10/130 (7%)
Query: 494 IQMMDFSTNKFM----GFIPDAVGMD---LSDNLLHGTIPKGLFQLQGLEYLNLSFNFLD 546
++ ++FS NK G A G++ L+ N L K L+ L+ L L N +
Sbjct: 59 LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT 118
Query: 547 G-QVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSF--SGFVPWKQGYQ 603
L S+R L L N +T PG +L L+ LNL N F + ++ W +
Sbjct: 119 CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWL 178
Query: 604 KFPGAFAGNP 613
+ GNP
Sbjct: 179 RKKRIVTGNP 188
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 372 TYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPEL-DALDSLKILDISNN 430
T + V++L+HN L N QL +L V N +S +++PEL L LK+L++ +N
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS-KLEPELCQKLPMLKVLNLQHN 83
Query: 431 QISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSG 482
++S T A +L + SN++ N+ K NL ++ N LS
Sbjct: 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 105/437 (24%), Positives = 162/437 (37%), Gaps = 65/437 (14%)
Query: 76 ACNFQTGHVVSINLTDTSLSGQVHPRLC---KLSFLEFLVLSSNAFTGRISTCFGGL--S 130
C G + + L + L + +LC + + L LS++ + +T F GL +
Sbjct: 189 GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWT 248
Query: 131 GLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN-------PELGGVFPGWVGNFSMNLE 183
L LDLSYN V D+ L L L+ N L G+F N +
Sbjct: 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 308
Query: 184 KLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGS--NRFSG-- 239
K S S S +LK L+HL++E N++ G + + L+ L S N F+
Sbjct: 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 368
Query: 240 --TLPCFAASAMS-LTVLKLDNNSV----------VGGIPTCIASL----QALTXXXXXX 282
T F + A S L +L L N + +G + L Q LT
Sbjct: 369 TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG 428
Query: 283 XXXXYEISPRLVFFEKXXXXXXXXXXXXGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPL 342
+EI + +PS + L +D S P
Sbjct: 429 LENIFEI------YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS--------PS 474
Query: 343 KITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALI 402
L++L L LSNN + + L L+++DL HN L A +
Sbjct: 475 PFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL---------------ARL 519
Query: 403 VNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTL-AGLKSLEIVDFSSNNLSGSLN 461
+ N G I L L L IL++ +N EIP+ + L L+I+D NNL+
Sbjct: 520 WKHANPGGPIY-FLKGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNTLPA 577
Query: 462 DAITKWTNLKYFSIARN 478
+LK ++ +N
Sbjct: 578 SVFNNQVSLKSLNLQKN 594
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 122/530 (23%), Positives = 204/530 (38%), Gaps = 59/530 (11%)
Query: 111 LVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGV 170
L L+ N + F S L +LD+ +N + P+ KL L+ L L+ N EL +
Sbjct: 30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQL 88
Query: 171 FPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGN---VHDFYQSL 227
F NL +L NS K+L LDL N L+ ++L
Sbjct: 89 SDKTFA-FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENL 147
Query: 228 LVLNLGSNRF----SGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTXXXXXXX 283
L L +N+ S L FA S SL L+L +N + P C ++ L
Sbjct: 148 QELLLSNNKIQALKSEELDIFANS--SLKKLELSSNQIKEFSPGCFHAIGRL----FGLF 201
Query: 284 XXXYEISPRLVFFEKXXXXXXXXXXXXGPLPSKIAQTTEKA--------GLVLLDLSHNR 335
++ P L EK L + TT L +LDLS+N
Sbjct: 202 LNNVQLGPSLT--EKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259
Query: 336 FSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVG- 394
+ L L+ FL N + + L ++ ++L + SI L +
Sbjct: 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 319
Query: 395 ----CFQLLA----LIVNNNNLSGEIQPELDALDSLKILDISNN-----QISGEIPLTLA 441
FQ L L + +N++ G L +LK L +SN+ ++ E ++LA
Sbjct: 320 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 379
Query: 442 GLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLP--NWLFSFQAIQMMDF 499
L I++ + N +S +DA + +L+ + N++ L W + I +
Sbjct: 380 H-SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR-GLENIFEIYL 437
Query: 500 STNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLR 559
S NK++ ++ + +P LQ L ++ +D LR+L
Sbjct: 438 SYNKYLQLTRNSFAL----------VP----SLQRLMLRRVALKNVDSSPSPFQPLRNLT 483
Query: 560 ALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAF 609
LDLS+N++ + L++L +L+L +N+ + WK P F
Sbjct: 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL--WKHANPGGPIYF 531
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 372 TYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPEL-DALDSLKILDISNN 430
T + V++L+HN L N QL +L V N +S +++PEL L LK+L++ +N
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS-KLEPELCQKLPMLKVLNLQHN 93
Query: 431 QISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSG 482
++S T A +L + SN++ N+ K NL ++ N LS
Sbjct: 94 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 145
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 105/437 (24%), Positives = 162/437 (37%), Gaps = 65/437 (14%)
Query: 76 ACNFQTGHVVSINLTDTSLSGQVHPRLC---KLSFLEFLVLSSNAFTGRISTCFGGL--S 130
C G + + L + L + +LC + + L LS++ + +T F GL +
Sbjct: 199 GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWT 258
Query: 131 GLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN-------PELGGVFPGWVGNFSMNLE 183
L LDLSYN V D+ L L L+ N L G+F N +
Sbjct: 259 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 318
Query: 184 KLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGS--NRFSG-- 239
K S S S +LK L+HL++E N++ G + + L+ L S N F+
Sbjct: 319 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 378
Query: 240 --TLPCFAASAMS-LTVLKLDNNSV----------VGGIPTCIASL----QALTXXXXXX 282
T F + A S L +L L N + +G + L Q LT
Sbjct: 379 TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG 438
Query: 283 XXXXYEISPRLVFFEKXXXXXXXXXXXXGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPL 342
+EI + +PS + L +D S P
Sbjct: 439 LENIFEI------YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS--------PS 484
Query: 343 KITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALI 402
L++L L LSNN + + L L+++DL HN L A +
Sbjct: 485 PFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL---------------ARL 529
Query: 403 VNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTL-AGLKSLEIVDFSSNNLSGSLN 461
+ N G I L L L IL++ +N EIP+ + L L+I+D NNL+
Sbjct: 530 WKHANPGGPIY-FLKGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNTLPA 587
Query: 462 DAITKWTNLKYFSIARN 478
+LK ++ +N
Sbjct: 588 SVFNNQVSLKSLNLQKN 604
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 122/530 (23%), Positives = 204/530 (38%), Gaps = 59/530 (11%)
Query: 111 LVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGV 170
L L+ N + F S L +LD+ +N + P+ KL L+ L L+ N EL +
Sbjct: 40 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQL 98
Query: 171 FPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGN---VHDFYQSL 227
F NL +L NS K+L LDL N L+ ++L
Sbjct: 99 SDKTFA-FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENL 157
Query: 228 LVLNLGSNRF----SGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTXXXXXXX 283
L L +N+ S L FA S SL L+L +N + P C ++ L
Sbjct: 158 QELLLSNNKIQALKSEELDIFANS--SLKKLELSSNQIKEFSPGCFHAIGRL----FGLF 211
Query: 284 XXXYEISPRLVFFEKXXXXXXXXXXXXGPLPSKIAQTTEKA--------GLVLLDLSHNR 335
++ P L EK L + TT L +LDLS+N
Sbjct: 212 LNNVQLGPSLT--EKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 269
Query: 336 FSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVG- 394
+ L L+ FL N + + L ++ ++L + SI L +
Sbjct: 270 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 329
Query: 395 ----CFQLLA----LIVNNNNLSGEIQPELDALDSLKILDISNN-----QISGEIPLTLA 441
FQ L L + +N++ G L +LK L +SN+ ++ E ++LA
Sbjct: 330 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 389
Query: 442 GLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLP--NWLFSFQAIQMMDF 499
L I++ + N +S +DA + +L+ + N++ L W + I +
Sbjct: 390 H-SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR-GLENIFEIYL 447
Query: 500 STNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLR 559
S NK++ ++ + +P LQ L ++ +D LR+L
Sbjct: 448 SYNKYLQLTRNSFAL----------VP----SLQRLMLRRVALKNVDSSPSPFQPLRNLT 493
Query: 560 ALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPGAF 609
LDLS+N++ + L++L +L+L +N+ + WK P F
Sbjct: 494 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL--WKHANPGGPIYF 541
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 88/190 (46%), Gaps = 17/190 (8%)
Query: 425 LDISNNQISGEIPLTLAGLKSLEIVDFSSNNLS--GSLNDAITKWTNLKYFSIARNKLSG 482
L++ +N++ L L + SSN LS G + + T+LKY ++ N +
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 92
Query: 483 NLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPK--------GLFQ-LQ 533
N+L + ++ +DF + +V + L NL++ I G+F L
Sbjct: 93 MSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLR-NLIYLDISHTHTRVAFNGIFNGLS 150
Query: 534 GLEYLNLSFN-FLDGQVPGLY-RLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNS 591
LE L ++ N F + +P ++ LR+L LDLS L P +SL L +LN+S+N+
Sbjct: 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 210
Query: 592 FSGF--VPWK 599
F P+K
Sbjct: 211 FFSLDTFPYK 220
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 9/140 (6%)
Query: 372 TYLQVIDLSHNMLSGSIPL--NIVGCFQLLALIVNNNNLS--GEIQPELDALDSLKILDI 427
T L+ +DLS N G I + N +G QL L ++NL E L +L +L LDI
Sbjct: 78 TSLKYLDLSFN---GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL-SLRNLIYLDI 133
Query: 428 SNNQISGEIPLTLAGLKSLEIVDFSSNNLSGS-LNDAITKWTNLKYFSIARNKLSGNLPN 486
S+ GL SLE++ + N+ + L D T+ NL + +++ +L P
Sbjct: 134 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 193
Query: 487 WLFSFQAIQMMDFSTNKFMG 506
S ++Q+++ S N F
Sbjct: 194 AFNSLSSLQVLNMSHNNFFS 213
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 67/167 (40%), Gaps = 38/167 (22%)
Query: 104 KLSFLEFLVLSSN--AFTGRISTCFGGLSGLKTLDLSYN-------KFVGVVP------- 147
KL+ L L LSSN +F G S G + LK LDLS+N F+G+
Sbjct: 50 KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ 109
Query: 148 ----------DAIMKLRNLRELILKGNP---ELGGVFPGWVGNFSMNLEKLDFSFNSFCG 194
+ LRNL L + G+F G LE L + NSF
Sbjct: 110 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-----LEVLKMAGNSFQE 164
Query: 195 E-IPESLYYLKSLKHLDLEK---NNLTGNVHDFYQSLLVLNLGSNRF 237
+P+ L++L LDL + L+ + SL VLN+ N F
Sbjct: 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 324 AGLVLLDLSHNRFSGE-IPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHN 382
+ L +L ++ N F +P TEL++L L LS L P +L+ LQV+++SHN
Sbjct: 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 495 QMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLY- 553
++ S++ G +P V ++L N L G P ++ L L N + ++
Sbjct: 40 ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFL 99
Query: 554 RLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFS 593
L L+ L+L N ++ +PG+ L LT LNL+ N F+
Sbjct: 100 GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 9/118 (7%)
Query: 339 EIPLKITELKSLQALFLSNNLLIGEIPAR--IGNLTYLQVIDLSHNMLSGSIPLNIVGCF 396
+IPL TEL L N+ +G I + G L +L ++L N L+G P G
Sbjct: 26 DIPLHTTEL-------LLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS 78
Query: 397 QLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSN 454
+ L + N + L LK L++ +NQIS +P + L SL ++ +SN
Sbjct: 79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 58/127 (45%), Gaps = 12/127 (9%)
Query: 100 PRLCKLSFLEFLVLSSNAFTGRIST--CFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLR 157
PR L E L+L+ N GRIS+ FG L L L+L N+ G+ P+A +++
Sbjct: 24 PRDIPLHTTE-LLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ 81
Query: 158 ELILKGN--PELGG-VFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKN 214
EL L N E+ +F G L+ L+ N +P S +L SL L+L N
Sbjct: 82 ELQLGENKIKEISNKMFLGL-----HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Query: 215 NLTGNVH 221
N H
Sbjct: 137 PFNCNCH 143
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%)
Query: 83 HVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKF 142
H+V + L L+G S ++ L L N + F GL LKTL+L N+
Sbjct: 55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI 114
Query: 143 VGVVPDAIMKLRNLRELILKGNP 165
V+P + L +L L L NP
Sbjct: 115 SCVMPGSFEHLNSLTSLNLASNP 137
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 61/160 (38%), Gaps = 18/160 (11%)
Query: 431 QISGEIPLTLAGL--KSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWL 488
+I +IPL L E+ SS+ L G L +L + RN+L+G PN
Sbjct: 22 EIPRDIPLHTTELLLNDNELGRISSDGLFGRL-------PHLVKLELKRNQLTGIEPNAF 74
Query: 489 FSFQAIQMMDFSTNK--------FMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNL 540
IQ + NK F+G + ++L DN + +P L L LNL
Sbjct: 75 EGASHIQELQLGENKIKEISNKMFLG-LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 133
Query: 541 SFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQ 580
+ N + + LR L+ + P + +Q
Sbjct: 134 ASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQ 173
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 101/267 (37%), Gaps = 42/267 (15%)
Query: 328 LLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGS 387
LLDL NR + L+ L L+ N++ P NL L+ + L N L
Sbjct: 36 LLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-L 94
Query: 388 IPLNI-VGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSL 446
IPL + G L L ++ N + + L +LK L++ +N + +GL SL
Sbjct: 95 IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSL 154
Query: 447 EIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMG 506
E + NL+ +A++ L + + AI+ F
Sbjct: 155 EQLTLEKCNLTSIPTEALSHLHGLIVLRLRH-----------LNINAIRDYSF------- 196
Query: 507 FIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHN 566
K L++L+ LE + + +LD P +L +L ++H
Sbjct: 197 --------------------KRLYRLKVLEISH--WPYLDTMTPNCLYGLNLTSLSITHC 234
Query: 567 SLTGQIPGNISSLQELTLLNLSYNSFS 593
+LT + L L LNLSYN S
Sbjct: 235 NLTAVPYLAVRHLVYLRFLNLSYNPIS 261
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 45/106 (42%), Gaps = 10/106 (9%)
Query: 126 FGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELG----GVFPGWVGNFSMN 181
F L+ L+L+ N V P A L NLR L L+ N L GVF G N
Sbjct: 52 FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGL-----SN 105
Query: 182 LEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSL 227
L KLD S N + L +LK L++ N+L H + L
Sbjct: 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL 151
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 111/248 (44%), Gaps = 13/248 (5%)
Query: 348 KSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIV-GCFQLLALIVNNN 406
++Q L++ N + P N+ L V+ L N LS S+P I +L L ++NN
Sbjct: 93 HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNN 151
Query: 407 NLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITK 466
NL A SL+ L +S+N+++ + L+ + SL + S N LS +
Sbjct: 152 NLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLLSTLAIPIAVE 208
Query: 467 WTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIP 526
+ + SI N + G + N + +Q + + ++ P V +DLS N L +
Sbjct: 209 ELDASHNSI--NVVRGPV-NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMY 265
Query: 527 KGLFQLQGLEYLNLSFNFLDGQVPGLY--RLRSLRALDLSHNSLTGQIPGNISSLQELTL 584
++Q LE L +S N L LY + +L+ LDLSHN L + N L
Sbjct: 266 HPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLEN 322
Query: 585 LNLSYNSF 592
L L +NS
Sbjct: 323 LYLDHNSI 330
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 13/66 (19%)
Query: 325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIG------EIPARIGNLTYLQVID 378
GLV +DLS+N + +++ L+ L++SNN L+ IP L+V+D
Sbjct: 249 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT-------LKVLD 301
Query: 379 LSHNML 384
LSHN L
Sbjct: 302 LSHNHL 307
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 61/132 (46%), Gaps = 20/132 (15%)
Query: 463 AITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLH 522
A+ + TNL Y + N+L LPN +F D TN + L +N L
Sbjct: 80 ALKELTNLTYLILTGNQLQS-LPNGVF--------DKLTN--------LKELVLVENQLQ 122
Query: 523 GTIPKGLF-QLQGLEYLNLSFNFLDGQVPGLY-RLRSLRALDLSHNSLTGQIPGNISSLQ 580
++P G+F +L L YLNL+ N L G++ +L +L LDLS+N L G L
Sbjct: 123 -SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT 181
Query: 581 ELTLLNLSYNSF 592
+L L L N
Sbjct: 182 QLKDLRLYQNQL 193
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 524 TIPKGLF-QLQGLEYLNLSFNFLDGQVPGLY-RLRSLRALDLSHNSLTGQIPGNISSLQE 581
++P G+F +L L+ L L N L G++ +L +L L+L+HN L G L
Sbjct: 99 SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN 158
Query: 582 LTLLNLSYNSFSGF 595
LT L+LSYN
Sbjct: 159 LTELDLSYNQLQSL 172
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%)
Query: 104 KLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKG 163
KL+ L +L L+ N F L+ L LDLSYN+ + KL L++L L
Sbjct: 131 KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ 190
Query: 164 N 164
N
Sbjct: 191 N 191
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 68/169 (40%), Gaps = 39/169 (23%)
Query: 398 LLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLS 457
L LI+ N L D L +LK L + NQ+
Sbjct: 87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ------------------------ 122
Query: 458 GSLNDAI-TKWTNLKYFSIARNKLSGNLPNWLFS-FQAIQMMDFSTNKFMGFIPDAV--- 512
SL D + K TNL Y ++A N+L LP +F + +D S N+ +P+ V
Sbjct: 123 -SLPDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDK 179
Query: 513 -----GMDLSDNLLHGTIPKGLF-QLQGLEYLNLSFNFLDGQVPGLYRL 555
+ L N L ++P G+F +L L+Y+ L N D PG+ L
Sbjct: 180 LTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYL 227
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 8/104 (7%)
Query: 129 LSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFS 188
L L LD+S+N+ + A+ L L+EL LKGN EL + PG + + LEKL +
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTP-TPKLEKLSLA 156
Query: 189 FNSFCGEIPESLYYLKSLKHLD---LEKNNLTGNVHDFYQSLLV 229
N E+P L L L++LD L++N+L F+ S L+
Sbjct: 157 NNQLT-ELPAGL--LNGLENLDTLLLQENSLYTIPKGFFGSHLL 197
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 70/163 (42%), Gaps = 45/163 (27%)
Query: 369 GNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDIS 428
G L L +DLSHN L S+PL +G L +L +LD+S
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPL--LG----------------------QTLPALTVLDVS 108
Query: 429 NNQISGEIPL-TLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNW 487
N+++ +PL L GL L+ + N L +T L+ S+A N+L+ LP
Sbjct: 109 FNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAG 166
Query: 488 LFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLF 530
L + ++ +D + L +N L+ TIPKG F
Sbjct: 167 LLN--GLENLD--------------TLLLQENSLY-TIPKGFF 192
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 91/217 (41%), Gaps = 52/217 (23%)
Query: 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSI 388
L+LS N S L + L SLQ L S+N + P + NLT L+ +D+S N +S
Sbjct: 134 LELSSNTISDISAL--SGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDIS 189
Query: 389 PLNIVGCFQLLALIVNNNNLSGEIQP---------------------ELDALDSLKILDI 427
L L +LI NN +S +I P L +L +L LD+
Sbjct: 190 VL--AKLTNLESLIATNNQIS-DITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDL 246
Query: 428 SNNQISGEIPLT--------------------LAGLKSLEIVDFSSNNLSGSLNDAITKW 467
+NNQIS PL+ LAGL +L ++ + N L I+
Sbjct: 247 ANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI--SPISNL 304
Query: 468 TNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKF 504
NL Y ++ N +S P + S +Q + FS NK
Sbjct: 305 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKV 339
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 78/300 (26%), Positives = 115/300 (38%), Gaps = 73/300 (24%)
Query: 102 LCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELIL 161
L L+ L+ L SSN T L+ L+ LD+S NK + + KL NL LI
Sbjct: 147 LSGLTSLQQLSFSSNQVTDL--KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIA 202
Query: 162 KGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVH 221
N ++ + P +G + NL++L + N +L L +L LDL NN N+
Sbjct: 203 TNN-QISDITP--LGILT-NLDELSLNGNQLKD--IGTLASLTNLTDLDL-ANNQISNLA 255
Query: 222 DF--YQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTXXX 279
L L LG+N+ S P +A LT L+L+ N +
Sbjct: 256 PLSGLTKLTELKLGANQISNISPLAGLTA--LTNLELNENQL------------------ 295
Query: 280 XXXXXXXYEISPRLVFFEKXXXXXXXXXXXXGPLPSKIAQTTEKAGLVLLDLSHNRFSGE 339
+ISP + L L L N S
Sbjct: 296 -------EDISP----------------------------ISNLKNLTYLTLYFNNISDI 320
Query: 340 IPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPL-NIVGCFQL 398
P ++ L LQ LF SNN + ++ + + NLT + + HN +S PL N+ QL
Sbjct: 321 SP--VSSLTKLQRLFFSNNK-VSDV-SSLANLTNINWLSAGHNQISDLTPLANLTRITQL 376
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 8/104 (7%)
Query: 129 LSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFS 188
L L LD+S+N+ + A+ L L+EL LKGN EL + PG + + LEKL +
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTP-TPKLEKLSLA 156
Query: 189 FNSFCGEIPESLYYLKSLKHLD---LEKNNLTGNVHDFYQSLLV 229
N E+P L L L++LD L++N+L F+ S L+
Sbjct: 157 NNQLT-ELPAGL--LNGLENLDTLLLQENSLYTIPKGFFGSHLL 197
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 70/163 (42%), Gaps = 45/163 (27%)
Query: 369 GNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDIS 428
G L L +DLSHN L S+PL +G L +L +LD+S
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPL--LG----------------------QTLPALTVLDVS 108
Query: 429 NNQISGEIPL-TLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNW 487
N+++ +PL L GL L+ + N L +T L+ S+A N+L+ LP
Sbjct: 109 FNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAG 166
Query: 488 LFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLF 530
L + ++ +D + L +N L+ TIPKG F
Sbjct: 167 LLN--GLENLD--------------TLLLQENSLY-TIPKGFF 192
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 10/158 (6%)
Query: 425 LDISNNQISGEIPLTLAGLKSLEIVDFSSNNLS--GSLNDAITKWTNLKYFSIARNKLSG 482
LD SNN ++ + L LE + N L + + T+ +L+ I++N +S
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 483 NLP----NWLFSFQAIQMMD--FSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLE 536
+ +W S ++ M + F P +DL N + +IPK + +L+ L+
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKI-KSIPKQVVKLEALQ 447
Query: 537 YLNLSFNFLDGQVPGLY-RLRSLRALDLSHNSLTGQIP 573
LN++ N L G++ RL SL+ + L N P
Sbjct: 448 ELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 194 GEIPESLYYLKSLKHLDLEKNNLTGNVHD----FYQSLLVLNLGSNRFSGTLPCFAASAM 249
+I E +KSL+ LD+ +N+++ + + +SLL LN+ SN + T+ F
Sbjct: 364 SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI--FRCLPP 421
Query: 250 SLTVLKLDNNSVVGGIPTCIASLQAL 275
+ VL L +N + IP + L+AL
Sbjct: 422 RIKVLDLHSNK-IKSIPKQVVKLEAL 446
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 512 VGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLD--GQVPGLY-RLRSLRALDLSHNSL 568
+ +D S+NLL T+ + L LE L L N L ++ + +++SL+ LD+S NS+
Sbjct: 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV 386
Query: 569 T-GQIPGNISSLQELTLLNLSYN 590
+ + G+ S + L LN+S N
Sbjct: 387 SYDEKKGDCSWTKSLLSLNMSSN 409
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 27/161 (16%)
Query: 353 LFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEI 412
L SNNLL + G+LT L+ + L N QL L +I
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMN--------------QLKEL--------SKI 366
Query: 413 QPELDALDSLKILDISNNQIS-GEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLK 471
+ SL+ LDIS N +S E + KSL ++ SSN L+ ++ + +K
Sbjct: 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIK 424
Query: 472 YFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAV 512
+ NK+ +P + +A+Q ++ ++N+ +PD +
Sbjct: 425 VLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKS-VPDGI 463
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 8/104 (7%)
Query: 129 LSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFS 188
L L LD+S+N+ + A+ L L+EL LKGN EL + PG + + LEKL +
Sbjct: 100 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLL-TPTPKLEKLSLA 157
Query: 189 FNSFCGEIPESLYYLKSLKHLD---LEKNNLTGNVHDFYQSLLV 229
N+ E+P L L L++LD L++N+L F+ S L+
Sbjct: 158 NNNLT-ELPAGL--LNGLENLDTLLLQENSLYTIPKGFFGSHLL 198
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 369 GNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDIS 428
G L L +DLSHN L S+PL L L V+ N L+ L L L+ L +
Sbjct: 75 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 133
Query: 429 NNQISGEIPLTLAGLKSLEIVDFSSNNLS 457
N++ P L LE + ++NNL+
Sbjct: 134 GNELKTLPPGLLTPTPKLEKLSLANNNLT 162
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 8/104 (7%)
Query: 129 LSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFS 188
L L LD+S+N+ + A+ L L+EL LKGN EL + PG + + LEKL +
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLL-TPTPKLEKLSLA 156
Query: 189 FNSFCGEIPESLYYLKSLKHLD---LEKNNLTGNVHDFYQSLLV 229
N+ E+P L L L++LD L++N+L F+ S L+
Sbjct: 157 NNNLT-ELPAGL--LNGLENLDTLLLQENSLYTIPKGFFGSHLL 197
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 369 GNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDIS 428
G L L +DLSHN L S+PL L L V+ N L+ L L L+ L +
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 429 NNQISGEIPLTLAGLKSLEIVDFSSNNLS 457
N++ P L LE + ++NNL+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 8/104 (7%)
Query: 129 LSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFS 188
L L LD+S+N+ + A+ L L+EL LKGN EL + PG + + LEKL +
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLL-TPTPKLEKLSLA 156
Query: 189 FNSFCGEIPESLYYLKSLKHLD---LEKNNLTGNVHDFYQSLLV 229
N+ E+P L L L++LD L++N+L F+ S L+
Sbjct: 157 NNNLT-ELPAGL--LNGLENLDTLLLQENSLYTIPKGFFGSHLL 197
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 369 GNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDIS 428
G L L +DLSHN L S+PL L L V+ N L+ L L L+ L +
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 429 NNQISGEIPLTLAGLKSLEIVDFSSNNLS 457
N++ P L LE + ++NNL+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 8/104 (7%)
Query: 129 LSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFS 188
L L LD+S+N+ + A+ L L+EL LKGN EL + PG + + LEKL +
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLL-TPTPKLEKLSLA 156
Query: 189 FNSFCGEIPESLYYLKSLKHLD---LEKNNLTGNVHDFYQSLLV 229
N+ E+P L L L++LD L++N+L F+ S L+
Sbjct: 157 NNNLT-ELPAGL--LNGLENLDTLLLQENSLYTIPKGFFGSHLL 197
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 369 GNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDIS 428
G L L +DLSHN L S+PL L L V+ N L+ L L L+ L +
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 429 NNQISGEIPLTLAGLKSLEIVDFSSNNLS 457
N++ P L LE + ++NNL+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 84/193 (43%), Gaps = 11/193 (5%)
Query: 313 LPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARI-GNL 371
+PS I T+K LDL N+ S L L+ L+L++N L +PA I L
Sbjct: 31 IPSNIPADTKK-----LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKEL 84
Query: 372 TYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPEL-DALDSLKILDISNN 430
L+ + ++ N L ++P+ + LA + + N + P + D+L L L + N
Sbjct: 85 KNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143
Query: 431 QISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLF- 489
++ L SL+ + +N L A K T LK + N+L +P F
Sbjct: 144 ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFD 202
Query: 490 SFQAIQMMDFSTN 502
S + ++M+ N
Sbjct: 203 SLEKLKMLQLQEN 215
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 68/172 (39%), Gaps = 18/172 (10%)
Query: 423 KILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSG 482
K LD+ +N++S L L ++ + N L + NL+ + NKL
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 483 NLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSF 542
LP +F Q+++ + + L N L P+ L L YL+L +
Sbjct: 100 -LPIGVFD----QLVNLAE------------LRLDRNQLKSLPPRVFDSLTKLTYLSLGY 142
Query: 543 NFLDGQVPGLY-RLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFS 593
N L G++ +L SL+ L L +N L G L EL L L N
Sbjct: 143 NELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 60/157 (38%), Gaps = 11/157 (7%)
Query: 111 LVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELG-- 168
L L SN + S F L+ L+ L L+ NK + +L+NL L + N
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101
Query: 169 -GVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDL---EKNNLTGNVHDFY 224
GVF V NL +L N P L L +L L E +L V D
Sbjct: 102 IGVFDQLV-----NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL 156
Query: 225 QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSV 261
SL L L +N+ L LKLDNN +
Sbjct: 157 TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 76/187 (40%), Gaps = 32/187 (17%)
Query: 313 LPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI-TELKSLQALFLSNNLL----------- 360
LPSK K L LL L+ N+ +P I ELK+L+ L++++N L
Sbjct: 52 LPSKAFHRLTK--LRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQALPIGVFDQL 108
Query: 361 ------------IGEIPARI-GNLTYLQVIDLSHNMLSGSIPLNIVGCF-QLLALIVNNN 406
+ +P R+ +LT L + L +N L S+P + L L + NN
Sbjct: 109 VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNN 167
Query: 407 NLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAI-- 464
L + D L LK L + NNQ+ L+ L+++ N + N I
Sbjct: 168 QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYM 227
Query: 465 TKWTNLK 471
KW K
Sbjct: 228 AKWLKKK 234
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 51/128 (39%), Gaps = 29/128 (22%)
Query: 497 MDFSTNKFMGF---IP-DAVGMDLSDNLLHG-----------------------TIPKGL 529
+D S+ K IP D +DL N L T+P G+
Sbjct: 21 VDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGI 80
Query: 530 F-QLQGLEYLNLSFNFLDGQVPGLY-RLRSLRALDLSHNSLTGQIPGNISSLQELTLLNL 587
F +L+ LE L ++ N L G++ +L +L L L N L P SL +LT L+L
Sbjct: 81 FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSL 140
Query: 588 SYNSFSGF 595
YN
Sbjct: 141 GYNELQSL 148
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 8/104 (7%)
Query: 129 LSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFS 188
L L LD+S+N+ + A+ L L+EL LKGN EL + PG + + LEKL +
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLL-TPTPKLEKLSLA 156
Query: 189 FNSFCGEIPESLYYLKSLKHLD---LEKNNLTGNVHDFYQSLLV 229
N+ E+P L L L++LD L++N+L F+ S L+
Sbjct: 157 NNNLT-ELPAGL--LNGLENLDTLLLQENSLYTIPKGFFGSHLL 197
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 369 GNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDIS 428
G L L +DLSHN L S+PL L L V+ N L+ L L L+ L +
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 429 NNQISGEIPLTLAGLKSLEIVDFSSNNLS 457
N++ P L LE + ++NNL+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 8/104 (7%)
Query: 129 LSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFS 188
L L LD+S+N+ + A+ L L+EL LKGN EL + PG + + LEKL +
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLL-TPTPKLEKLSLA 156
Query: 189 FNSFCGEIPESLYYLKSLKHLD---LEKNNLTGNVHDFYQSLLV 229
N E+P L L L++LD L++N+L F+ S L+
Sbjct: 157 NNQLT-ELPAGL--LNGLENLDTLLLQENSLYTIPKGFFGSHLL 197
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%)
Query: 419 LDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLS 457
L +L ILD+SNN I+ L GL++LEI+DF NNL+
Sbjct: 479 LRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLA 517
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 73/297 (24%), Positives = 122/297 (41%), Gaps = 58/297 (19%)
Query: 374 LQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPEL-DALDSLKILDISNNQI 432
+ V++L+HN L P N QL L N++S +++PEL L LK+L++ +N++
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSIS-KLEPELCQILPLLKVLNLQHNEL 85
Query: 433 SGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQ 492
S T +L +D SN++ ++ NL ++ N LS +
Sbjct: 86 SQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLE 145
Query: 493 AIQMMDFSTNKFMGFIPDAV---------GMDLSDNLLHGTIPKGLFQLQG--------- 534
+Q + + NK + + + +DLS N L P G FQ G
Sbjct: 146 NLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSP-GCFQTIGKLFALLLNN 204
Query: 535 -------------------LEYLNLSFNFL----DGQVPGLYRLRSLRALDLSHNSLTGQ 571
++ L+L+ N L + GL + +L LDLS+N+L
Sbjct: 205 AQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGL-KWTNLTQLDLSYNNLHDV 263
Query: 572 IPGNISSLQELTLLNLSYN--------SFSG-----FVPWKQGYQKFPGAFAGNPNL 615
G+ S L L L+L YN SF G ++ K+ + K + A +PN+
Sbjct: 264 GNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNI 320
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 45/118 (38%), Gaps = 27/118 (22%)
Query: 126 FGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKG---NPELGGVFPGWVGNFSM-- 180
F G S L+ LDLS N P + L L+L NP L + N S+
Sbjct: 167 FLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQN 226
Query: 181 ----------------------NLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNL 216
NL +LD S+N+ S YL SL++L LE NN+
Sbjct: 227 LSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNI 284
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 104/235 (44%), Gaps = 34/235 (14%)
Query: 349 SLQALFLSNNLLIGEIPARIGNL--TYLQVIDLSHNMLS--GSIPLNIVGCFQLLALIVN 404
S+Q L L+NN L+ + L T L +DLS+N L G+ + + + L+L N
Sbjct: 223 SIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYN 282
Query: 405 NNNLSGEIQPE-LDALDSLKILDISNNQISGEIPL---------TLAGLKSLEIVDFSSN 454
N + P L +L+ L + + L + LK LE ++ N
Sbjct: 283 N---IQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDN 339
Query: 455 NLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGM 514
N+ + ++ T +LKY S+++ +F ++Q + T + P + +
Sbjct: 340 NIPSTKSNTFTGLVSLKYLSLSK------------TFTSLQTLTNETFVSLAHSP-LLTL 386
Query: 515 DLSDNLLHGTIPKGLFQLQG-LEYLNLSFNFLDGQVPGL-YR-LRSLRALDLSHN 566
+L+ N + I G F G L L+L N ++ ++ G +R LR++ + LS+N
Sbjct: 387 NLTKNHI-SKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYN 440
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 17/105 (16%)
Query: 126 FGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKL 185
F L L+ L L YN + P + L NLR L LK F + + +
Sbjct: 268 FSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLK------RAFTKQSVSLASHPNID 321
Query: 186 DFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVL 230
DFSF +LK L++L+++ NN+ + + L+ L
Sbjct: 322 DFSFQ-----------WLKYLEYLNMDDNNIPSTKSNTFTGLVSL 355
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 8/104 (7%)
Query: 129 LSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFS 188
L L LD+S+N+ + A+ L L+EL LKGN EL + PG + + LEKL +
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLL-TPTPKLEKLSLA 156
Query: 189 FNSFCGEIPESLYYLKSLKHLD---LEKNNLTGNVHDFYQSLLV 229
N E+P L L L++LD L++N+L F+ S L+
Sbjct: 157 NNQLT-ELPAGL--LNGLENLDTLLLQENSLYTIPKGFFGSHLL 197
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 111/247 (44%), Gaps = 13/247 (5%)
Query: 349 SLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIV-GCFQLLALIVNNNN 407
++Q L++ N + P N+ L V+ L N LS S+P I +L L ++NNN
Sbjct: 100 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNN 158
Query: 408 LSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKW 467
L A SL+ L +S+N+++ + L+ + SL + S N LS +
Sbjct: 159 LERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLLSTLAIPIAVEE 215
Query: 468 TNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPK 527
+ + SI N + G + N + +Q + + ++ P V +DLS N L +
Sbjct: 216 LDASHNSI--NVVRGPV-NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYH 272
Query: 528 GLFQLQGLEYLNLSFNFLDGQVPGLY--RLRSLRALDLSHNSLTGQIPGNISSLQELTLL 585
++Q LE L +S N L LY + +L+ LDLSHN L + N L L
Sbjct: 273 PFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 329
Query: 586 NLSYNSF 592
L +NS
Sbjct: 330 YLDHNSI 336
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 13/66 (19%)
Query: 325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIG------EIPARIGNLTYLQVID 378
GLV +DLS+N + +++ L+ L++SNN L+ IP L+V+D
Sbjct: 255 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT-------LKVLD 307
Query: 379 LSHNML 384
LSHN L
Sbjct: 308 LSHNHL 313
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 8/104 (7%)
Query: 129 LSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFS 188
L L LD+S+N+ + A+ L L+EL LKGN EL + PG + + LEKL +
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLL-TPTPKLEKLSLA 156
Query: 189 FNSFCGEIPESLYYLKSLKHLD---LEKNNLTGNVHDFYQSLLV 229
N E+P L L L++LD L++N+L F+ S L+
Sbjct: 157 NNDLT-ELPAGL--LNGLENLDTLLLQENSLYTIPKGFFGSHLL 197
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 11/113 (9%)
Query: 419 LDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARN 478
L S+K LD+++ QI+ P LAGL +L+++ N ++ + TNL+Y SI N
Sbjct: 112 LQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNN 167
Query: 479 KLSGNLPNWLFSFQAIQMMDFSTNKF-----MGFIPDAVGMDLSDNLLHGTIP 526
+++ P L + + + NK + +P+ + + L DN + P
Sbjct: 168 QVNDLTP--LANLSKLTTLRADDNKISDISPLASLPNLIEVHLKDNQISDVSP 218
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 74/188 (39%), Gaps = 51/188 (27%)
Query: 104 KLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPD-AIMKLRNLRELILK 162
L LE L L N+ F GL+ L TL+L ++ ++ V+P A L LREL L+
Sbjct: 97 HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL-FDNWLTVIPSGAFEYLSKLRELWLR 155
Query: 163 GNP------------------ELG----------GVFPGWVG----NFSM---------- 180
NP +LG G F G N M
Sbjct: 156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLT 215
Query: 181 ---NLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLT---GNVHDFYQSLLVLNLGS 234
LE+L+ S N F P S + L SLK L + + ++ N D SL+ LNL
Sbjct: 216 PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAH 275
Query: 235 NRFSGTLP 242
N S +LP
Sbjct: 276 NNLS-SLP 282
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 126 FGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNP 165
F GL+ L L+L++N + D LR L EL L NP
Sbjct: 262 FDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 135 LDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCG 194
LDL NK + L+NL LIL N ++ + PG + LE+L S N
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPL-VKLERLYLSKNQL-K 113
Query: 195 EIPESLYYLKSLKHLDLEKNNLT---GNVHDFYQSLLVLNLGSN 235
E+PE + K+L+ L + +N +T +V + ++V+ LG+N
Sbjct: 114 ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 155
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
Query: 424 ILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGN 483
+LD+ NN+I+ LK+L + +N +S A L+ +++N+L
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-E 114
Query: 484 LPNWL-FSFQAIQMMDFSTNKFMGFIPDAVG----MDLSDNLLHGT-IPKGLFQ-LQGLE 536
LP + + Q +++ + K + + + ++L N L + I G FQ ++ L
Sbjct: 115 LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174
Query: 537 YLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSG 594
Y+ ++ + GL SL L L N +T ++ L L L LS+NS S
Sbjct: 175 YIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 135 LDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCG 194
LDL NK + L+NL LIL N ++ + PG + LE+L S N
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPL-VKLERLYLSKNQL-K 113
Query: 195 EIPESLYYLKSLKHLDLEKNNLT---GNVHDFYQSLLVLNLGSN 235
E+PE + K+L+ L + +N +T +V + ++V+ LG+N
Sbjct: 114 ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 155
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
Query: 424 ILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGN 483
+LD+ NN+I+ LK+L + +N +S A L+ +++N+L
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-E 114
Query: 484 LPNWL-FSFQAIQMMDFSTNKFMGFIPDAVG----MDLSDNLLHGT-IPKGLFQ-LQGLE 536
LP + + Q +++ + K + + + ++L N L + I G FQ ++ L
Sbjct: 115 LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174
Query: 537 YLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSG 594
Y+ ++ + GL SL L L N +T ++ L L L LS+NS S
Sbjct: 175 YIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 90/217 (41%), Gaps = 52/217 (23%)
Query: 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSI 388
L+LS N S L + L SLQ L S+N + P + NLT L+ +D+S N +S
Sbjct: 134 LELSSNTISDISAL--SGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDIS 189
Query: 389 PLNIVGCFQLLALIVNNNNLSGEIQP---------------------ELDALDSLKILDI 427
L L +LI NN +S +I P L +L +L LD+
Sbjct: 190 VL--AKLTNLESLIATNNQIS-DITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDL 246
Query: 428 SNNQISGEIPLT--------------------LAGLKSLEIVDFSSNNLSGSLNDAITKW 467
+NNQIS PL+ LAGL +L ++ + N L I+
Sbjct: 247 ANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI--SPISNL 304
Query: 468 TNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKF 504
NL Y ++ N +S P + S +Q + F NK
Sbjct: 305 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 339
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 90/217 (41%), Gaps = 52/217 (23%)
Query: 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSI 388
L+LS N S L + L SLQ L S+N + P + NLT L+ +D+S N +S
Sbjct: 134 LELSSNTISDISAL--SGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDIS 189
Query: 389 PLNIVGCFQLLALIVNNNNLSGEIQP---------------------ELDALDSLKILDI 427
L L +LI NN +S +I P L +L +L LD+
Sbjct: 190 VL--AKLTNLESLIATNNQIS-DITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDL 246
Query: 428 SNNQISGEIPLT--------------------LAGLKSLEIVDFSSNNLSGSLNDAITKW 467
+NNQIS PL+ LAGL +L ++ + N L I+
Sbjct: 247 ANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI--SPISNL 304
Query: 468 TNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKF 504
NL Y ++ N +S P + S +Q + F NK
Sbjct: 305 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 339
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 108/258 (41%), Gaps = 28/258 (10%)
Query: 361 IGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPE-LDAL 419
+ E+P+ + L+ L+ + LS N ++ L L + N E+ L+ L
Sbjct: 290 LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349
Query: 420 DSLKILDISNNQI--SGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIAR 477
++L+ LD+S++ I S L L L L+ ++ S N +A + L+ +A
Sbjct: 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409
Query: 478 NKLSGNLPNWLFSFQAIQMM----------DFSTNKFMGFIPDAVGMDLSDNLLHGTIPK 527
+L + + FQ + ++ D S+ + +P ++L N PK
Sbjct: 410 TRLK--VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN----HFPK 463
Query: 528 GLFQ-------LQGLEYLNLSFNFLDG-QVPGLYRLRSLRALDLSHNSLTGQIPGNISSL 579
G Q L LE L LSF L L+ + +DLSHN LT +S L
Sbjct: 464 GNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL 523
Query: 580 QELTLLNLSYNSFSGFVP 597
+ + LNL+ N S +P
Sbjct: 524 KGI-YLNLASNHISIILP 540
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 128 GLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDF 187
GLS LK L LS NKF + + +L L +KGN + + G + N NL +LD
Sbjct: 299 GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE-NLRELDL 357
Query: 188 SFNSF-----CGEIPESLYYLKSL 206
S + C +L +L+SL
Sbjct: 358 SHDDIETSDCCNLQLRNLSHLQSL 381
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 71/170 (41%), Gaps = 21/170 (12%)
Query: 387 SIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSL 446
S+P I Q L + N+L D L SL L + N++ L SL
Sbjct: 21 SVPTGIPA--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSL 78
Query: 447 EIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMG 506
++ S+N L N K T LK ++ N+L +LP+ +F + Q+ D
Sbjct: 79 TYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFD-KLTQLKD-------- 128
Query: 507 FIPDAVGMDLSDNLLHGTIPKGLF-QLQGLEYLNLSFNFLDGQVPGLYRL 555
+ L N L ++P G+F +L L+Y+ L N D PG+ L
Sbjct: 129 -------LRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYL 170
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 107/262 (40%), Gaps = 52/262 (19%)
Query: 358 NLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELD 417
+L + +P I T L +DL +N +S + G L AL++ NN +S +
Sbjct: 42 DLGLKAVPKEISPDTTL--LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFS 99
Query: 418 ALDSLKILDISNNQISGEIPLTL----------------------AGLKSLEIVDFSSNN 455
L L+ L IS N + EIP L +GL+++ ++ N
Sbjct: 100 PLRKLQKLYISKNHLV-EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP 158
Query: 456 LSGS-LNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGM 514
L S L Y I+ KL+G +P L + + + NK +
Sbjct: 159 LENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDL--PETLNELHLDHNKIQ-------AI 208
Query: 515 DLSDNLLHGTIPK---GLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQ 571
+L D L + + + G Q++ +E +LSF L +LR L L +N L+ +
Sbjct: 209 ELEDLLRYSKLYRLGLGHNQIRMIENGSLSF------------LPTLRELHLDNNKLS-R 255
Query: 572 IPGNISSLQELTLLNLSYNSFS 593
+P + L+ L ++ L N+ +
Sbjct: 256 VPAGLPDLKLLQVVYLHTNNIT 277
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 88/188 (46%), Gaps = 36/188 (19%)
Query: 343 KITELK------SLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCF 396
++T+LK +L+ L +S+N + +I + + LT L+ + ++N +S PL I+
Sbjct: 161 QVTDLKPLANLTTLERLDISSNK-VSDI-SVLAKLTNLESLIATNNQISDITPLGILTNL 218
Query: 397 QLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLT----------------- 439
L+L N N +I L +L +L LD++NNQIS PL+
Sbjct: 219 DELSL---NGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN 274
Query: 440 ---LAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQM 496
LAGL +L ++ + N L I+ NL Y ++ N +S P + S +Q
Sbjct: 275 ISPLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 330
Query: 497 MDFSTNKF 504
+ FS NK
Sbjct: 331 LFFSNNKV 338
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 126 FGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
F L+ +DLS N+ + PDA LR+L L+L GN
Sbjct: 52 FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 12/162 (7%)
Query: 352 ALFLSNNLL------IGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNN 405
A SNN++ + EIP + + I L N + IP ++ L I +
Sbjct: 8 ACTCSNNIVDCRGKGLTEIPTNLPET--ITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLS 64
Query: 406 NNLSGEIQPE-LDALDSLKILDISNNQISGEIPLTL-AGLKSLEIVDFSSNNLSGSLNDA 463
NN E+ P+ L SL L + N+I+ E+P +L GL SL+++ ++N ++ DA
Sbjct: 65 NNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDA 123
Query: 464 ITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFM 505
NL S+ NKL +AIQ M + N F+
Sbjct: 124 FQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 126 FGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
F L+ +DLS N+ + PDA LR+L L+L GN
Sbjct: 52 FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 12/162 (7%)
Query: 352 ALFLSNNLL------IGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNN 405
A SNN++ + EIP + + I L N + IP ++ L I +
Sbjct: 8 ACTCSNNIVDCRGKGLTEIPTNLPET--ITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLS 64
Query: 406 NNLSGEIQPE-LDALDSLKILDISNNQISGEIPLTL-AGLKSLEIVDFSSNNLSGSLNDA 463
NN E+ P+ L SL L + N+I+ E+P +L GL SL+++ ++N ++ DA
Sbjct: 65 NNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINXLRVDA 123
Query: 464 ITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFM 505
NL S+ NKL +AIQ M + N F+
Sbjct: 124 FQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 8/118 (6%)
Query: 129 LSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFS 188
L GLK + + + + + +RNL L L+ N E P + + NLE ++F
Sbjct: 122 LHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRANIE---EMPSHLFDDLENLESIEFG 178
Query: 189 FNSFCGEIPESLY-YLKSLKHLDLEKNNLTG---NVHDFYQSLLVLNLGSNRFSGTLP 242
N ++P ++ + LK L+L N L + D SL + L +N + + P
Sbjct: 179 SNKL-RQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 235
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 69/167 (41%), Gaps = 33/167 (19%)
Query: 367 RIGNLTYLQVIDLSHNMLSGSIP----LNIVGCFQLLALIVNNNNLSGEI-QPELDALDS 421
RIG + +Q + ML G P L+ +G LI ++NL I + LD L
Sbjct: 68 RIGEVDRVQ---MRRCMLPGHTPIASILDYLGIVSPTTLIFESDNLGMNITRQHLDRLHG 124
Query: 422 LKILDISNNQISG----------------------EIPLTL-AGLKSLEIVDFSSNNLSG 458
LK + +++ E+P L L++LE ++F SN L
Sbjct: 125 LKRFRFTTRRLTHIPANLLTDMRNLSHLELRANIEEMPSHLFDDLENLESIEFGSNKLRQ 184
Query: 459 SLNDAITKWTNLKYFSIARNKLSGNLPNWLFS-FQAIQMMDFSTNKF 504
K LK ++A N+L ++P+ +F ++Q + TN +
Sbjct: 185 MPRGIFGKMPKLKQLNLASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 230
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%)
Query: 81 TGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYN 140
T V S++L++ ++ + L + L+ LVL+SN F L L+ LDLSYN
Sbjct: 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110
Query: 141 KFVGVVPDAIMKLRNLRELILKGNP 165
+ L +L L L GNP
Sbjct: 111 YLSNLSSSWFKPLSSLTFLNLLGNP 135
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 79/165 (47%), Gaps = 15/165 (9%)
Query: 374 LQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQIS 433
++ +DLS+N ++ ++ C L AL++ +N ++ + +L SL+ LD+S N +S
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 434 GEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQA 493
L+ + K L + F NL G+ + + + + + + GN+ +F
Sbjct: 114 N---LSSSWFKPLSSLTFL--NLLGNPYKTLGETSLFSHLTKLQILRVGNMD----TFTK 164
Query: 494 IQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYL 538
IQ DF+ F+ + + +D SD L PK L +Q + +L
Sbjct: 165 IQRKDFAGLTFL----EELEIDASD--LQSYEPKSLKSIQNVSHL 203
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 88/188 (46%), Gaps = 36/188 (19%)
Query: 343 KITELK------SLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCF 396
++T+LK +L+ L +S+N + +I + + LT L+ + ++N +S PL I+
Sbjct: 165 QVTDLKPLANLTTLERLDISSNK-VSDI-SVLAKLTNLESLIATNNQISDITPLGILTNL 222
Query: 397 QLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLT----------------- 439
L+L N N +I L +L +L LD++NNQIS PL+
Sbjct: 223 DELSL---NGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN 278
Query: 440 ---LAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQM 496
LAGL +L ++ + N L I+ NL Y ++ N +S P + S +Q
Sbjct: 279 ISPLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 334
Query: 497 MDFSTNKF 504
+ F+ NK
Sbjct: 335 LFFANNKV 342
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%)
Query: 81 TGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYN 140
T V S++L++ ++ + L + L+ LVL+SN F L L+ LDLSYN
Sbjct: 25 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 84
Query: 141 KFVGVVPDAIMKLRNLRELILKGNP 165
+ L +L L L GNP
Sbjct: 85 YLSNLSSSWFKPLSSLTFLNLLGNP 109
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 79/165 (47%), Gaps = 15/165 (9%)
Query: 374 LQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQIS 433
++ +DLS+N ++ ++ C L AL++ +N ++ + +L SL+ LD+S N +S
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Query: 434 GEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQA 493
L+ + K L + F NL G+ + + + + + + GN+ +F
Sbjct: 88 N---LSSSWFKPLSSLTFL--NLLGNPYKTLGETSLFSHLTKLQILRVGNMD----TFTK 138
Query: 494 IQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYL 538
IQ DF+ F+ + + +D SD L PK L +Q + +L
Sbjct: 139 IQRKDFAGLTFL----EELEIDASD--LQSYEPKSLKSIQNVSHL 177
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 86/211 (40%), Gaps = 20/211 (9%)
Query: 313 LPSKIAQTTEKAGLV---LLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIG 369
+PS I TEK L L LS F G L L L L N L
Sbjct: 29 VPSGIPADTEKLDLQSTGLATLSDATFRG--------LTKLTWLNLDYNQLQTLSAGVFD 80
Query: 370 NLTYLQVIDLSHNMLSGSIPLNIVGCF-QLLALIVNNNNLSGEIQPELDALDSLKILDIS 428
+LT L + L++N L+ S+PL + QL L + N L D L LK L ++
Sbjct: 81 DLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN 139
Query: 429 NNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWL 488
NQ+ L +L+ + S+N L + A + L+ ++ N+ + L
Sbjct: 140 TNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCETL 199
Query: 489 FSFQAIQMMDFSTNKFMGFIPDAVGMDLSDN 519
+ Q I+ ++NK + D G +L ++
Sbjct: 200 YLSQWIRE---NSNK----VKDGTGQNLHES 223
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 11/113 (9%)
Query: 419 LDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARN 478
L S+K LD+++ QI+ P LAGL +L+++ N ++ + TNL+Y SI
Sbjct: 106 LQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNA 161
Query: 479 KLSGNLPNWLFSFQAIQMMDFSTNKF-----MGFIPDAVGMDLSDNLLHGTIP 526
++S P L + + + NK + +P+ + + L +N + P
Sbjct: 162 QVSDLTP--LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP 212
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 50/113 (44%), Gaps = 9/113 (7%)
Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVV-PDAIMKLRNLRELILK--GN 164
L L L SNA G + F GL+ L+ LDLS N + VV P L +L L L G
Sbjct: 57 LTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGL 116
Query: 165 PELG-GVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNL 216
ELG G+F G L+ L N+ + L +L HL L N +
Sbjct: 117 QELGPGLFRGLAA-----LQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRI 164
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 88/207 (42%), Gaps = 48/207 (23%)
Query: 398 LLALIVNNNNLSG------------------EIQPELDALDSLKILDISNNQISGEIPLT 439
L +L+V+NNNL E PEL LKI+D+ NN +
Sbjct: 113 LKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK----- 167
Query: 440 LAGL-KSLEIVDFSSNNLSGSLNDAITKWTNLKYFSI--ARNKLSGNLPNWLFSFQAIQM 496
L L SLE + +N L + + + NL + + A N LP+ S ++I
Sbjct: 168 LPDLPPSLEFIAAGNNQL-----EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESI-- 220
Query: 497 MDFSTNKFMGFIPDAVGMDL-----SDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG 551
+ N + +P+ + +DN L T+P LE LN+ N+L +P
Sbjct: 221 --VAGNNILEELPELQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYL-TDLPE 274
Query: 552 LYRLRSLRALDLSHNSLTG--QIPGNI 576
L +SL LD+S N +G ++P N+
Sbjct: 275 LP--QSLTFLDVSENIFSGLSELPPNL 299
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 524 TIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPG--NISSLQE 581
T+ L QL + +L+LS N L P L LR L L S N+L + G N+ LQE
Sbjct: 454 TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VDGVANLPRLQE 512
Query: 582 LTLLNLSYNSFSGFVP 597
L L N + P
Sbjct: 513 LLLCNNRLQQSAAIQP 528
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 86/211 (40%), Gaps = 20/211 (9%)
Query: 313 LPSKIAQTTEKAGLV---LLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIG 369
+PS I TEK L L LS F G L L L L N L
Sbjct: 29 VPSGIPADTEKLDLQSTGLATLSDATFRG--------LTKLTWLNLDYNQLQTLSAGVFD 80
Query: 370 NLTYLQVIDLSHNMLSGSIPLNIVGCF-QLLALIVNNNNLSGEIQPELDALDSLKILDIS 428
+LT L + L++N L+ S+PL + QL L + N L D L LK L ++
Sbjct: 81 DLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN 139
Query: 429 NNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWL 488
NQ+ L +L+ + S+N L + A + L+ ++ N+ + L
Sbjct: 140 TNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEIL 199
Query: 489 FSFQAIQMMDFSTNKFMGFIPDAVGMDLSDN 519
+ Q I+ ++NK + D G +L ++
Sbjct: 200 YLSQWIRE---NSNK----VKDGTGQNLHES 223
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 524 TIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPG--NISSLQE 581
T+ L QL + +L+LS N L P L LR L L S N+L + G N+ LQE
Sbjct: 454 TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VDGVANLPRLQE 512
Query: 582 LTLLNLSYNSFSGFVP 597
L L N + P
Sbjct: 513 LLLCNNRLQQSAAIQP 528
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 29/114 (25%)
Query: 127 GGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLD 186
G + +K+LDLS+NK + + NL+ LILK +
Sbjct: 49 GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS---------------------- 86
Query: 187 FSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFY---QSLLVLNLGSNRF 237
N+ G ++ Y L SL+HLDL N+L+ ++ SL LNL N +
Sbjct: 87 -RINTIEG---DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 136
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 86/182 (47%), Gaps = 36/182 (19%)
Query: 346 ELKSLQALFLSNNLLIGEI---PARIGNLTYLQVIDLSHNML-----SGSIPLNIVGCFQ 397
LKSL+ L LS NL++ E A G LQ + LS N L +G I L +
Sbjct: 358 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN--- 414
Query: 398 LLALIVNNNNLSGEIQPELDAL---DSLKILDISNNQI---SGEIPLTLAGLKSLEIVDF 451
L +L ++ N P D+ + ++ L++S+ I IP ++LE++D
Sbjct: 415 LTSLDISRNTF----HPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP------QTLEVLDV 464
Query: 452 SSNNLSGSLNDAITKW-TNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPD 510
S+NNL D+ + + L+ I+RNKL LP+ F + +M ++N+ +PD
Sbjct: 465 SNNNL-----DSFSLFLPRLQELYISRNKLK-TLPDASL-FPVLLVMKIASNQLKS-VPD 516
Query: 511 AV 512
+
Sbjct: 517 GI 518
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 29/60 (48%)
Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
L+ L L LS N S F L L+ LDLSYN + + + L NL+EL L N
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 65/153 (42%), Gaps = 24/153 (15%)
Query: 126 FGGL--SGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLE 183
F GL SG+KT DLS +K ++ +L +L L N E+ + + +L
Sbjct: 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN-EINKIDDNAFWGLT-HLL 326
Query: 184 KLDFSFNSFCGEIPESLYY-LKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLP 242
KL+ S N F G I ++ L L+ LDL N++ LG F G LP
Sbjct: 327 KLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRA-------------LGDQSFLG-LP 371
Query: 243 CFAASAMSLTVLKLDNNSVVGGIPTCIASLQAL 275
A+ LK SV GI + SLQ +
Sbjct: 372 NLKELALDTNQLK----SVPDGIFDRLTSLQKI 400
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 87/409 (21%), Positives = 147/409 (35%), Gaps = 31/409 (7%)
Query: 82 GHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSN--AFTGRISTCFGGLSGLKTLDLSY 139
HV ++L+ S++ +L L+FL + R +T F GLS L L L Y
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNT-FRGLSSLIILKLDY 88
Query: 140 NKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPES 199
N+F+ + A L NL L L G V G +LE L N+ P S
Sbjct: 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148
Query: 200 LYY-LKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDN 258
+ ++ LDL N + + +LN F+ S+++L D
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEED-----LLNFQGKHFT----LLRLSSITLQ----DM 195
Query: 259 NSVVGGIPTCIASLQALTXXXXXXXXXXYEISPRLVFFEKXXXXXXXXXXXXGPLPSKIA 318
N G C + + ++ S FF+ + S I
Sbjct: 196 NEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT---------KIQSLIL 246
Query: 319 QTTEKAGLVLLDLSHNRFS--GEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQV 376
+ G H F K E ++ LS + + + + + T L+
Sbjct: 247 SNSYNMG---SSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQ 303
Query: 377 IDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEI 436
+ L+ N ++ G LL L ++ N L + LD L++LD+S N I
Sbjct: 304 LTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALG 363
Query: 437 PLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLP 485
+ GL +L+ + +N L + + T+L+ + N + P
Sbjct: 364 DQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 87/198 (43%), Gaps = 26/198 (13%)
Query: 440 LAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDF 499
L L +L + + N L N K TNLK + N+L LP+ +F D
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVF--------DK 131
Query: 500 STNKFMGFIPDAVGMDLSDNLLHGTIPKGLF-QLQGLEYLNLSFNFLDGQVPGLY-RLRS 557
TN + L N L ++PKG+F +L L L+L N L G++ +L
Sbjct: 132 LTNLTYLY--------LYHNQLQ-SLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQ 182
Query: 558 LRALDLSHNSLTGQIPG---NISSLQELTLLNLSYN-SFSGFVPWKQGYQKFPGAFAGNP 613
L+ L L+ N L G ++SL + LLN ++ + S + + + PG G
Sbjct: 183 LKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNPWDCACSDILYLSRWISQHPGLVFGYL 242
Query: 614 NLCLESSHGECNRTSLPL 631
NL +S+ C+ T+ P+
Sbjct: 243 NLDPDSAR--CSGTNTPV 258
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 84/221 (38%), Gaps = 52/221 (23%)
Query: 421 SLKILDISNNQISGEI---PLTLAGLKSLEIVDFSSNNLSGSLNDAITKWT-------NL 470
SLK L + +I I L + G+ L+ + + ++G+ + + T NL
Sbjct: 69 SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128
Query: 471 KYFSIA-RNKLSGNLPNWL------FSFQAIQMMDFSTNKFMGFIPDAVGMDLSDN---- 519
+ S A R+ L WL S ++FS + F P +DLSDN
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF-PALSTLDLSDNPELG 187
Query: 520 ---LLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLR-SLRALDLSHNSL------- 568
L+ P LQ L N G L R L+ LDLSHNSL
Sbjct: 188 ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP 247
Query: 569 ---------------TG--QIPGNISSLQELTLLNLSYNSF 592
TG Q+P + + +L++L+LSYN
Sbjct: 248 SCDWPSQLNSLNLSFTGLKQVPKGLPA--KLSVLDLSYNRL 286
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 36/188 (19%)
Query: 343 KITELK------SLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCF 396
++T+LK +L+ L +S+N + +I + + LT L+ + ++N +S PL I+
Sbjct: 166 QVTDLKPLANLTTLERLDISSNK-VSDI-SVLAKLTNLESLIATNNQISDITPLGILTNL 223
Query: 397 QLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLT----------------- 439
L+L N N +I L +L +L LD++NNQIS PL+
Sbjct: 224 DELSL---NGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN 279
Query: 440 ---LAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQM 496
LAGL +L ++ + N L I+ NL Y ++ N +S P + S +Q
Sbjct: 280 ISPLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 335
Query: 497 MDFSTNKF 504
+ F NK
Sbjct: 336 LFFYNNKV 343
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 29/114 (25%)
Query: 127 GGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLD 186
G + +K+LDLS+NK + + NL+ LILK +
Sbjct: 23 GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS---------------------- 60
Query: 187 FSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFY---QSLLVLNLGSNRF 237
N+ G ++ Y L SL+HLDL N+L+ ++ SL LNL N +
Sbjct: 61 -RINTIEG---DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 110
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 85/182 (46%), Gaps = 36/182 (19%)
Query: 346 ELKSLQALFLSNNLLIGEI---PARIGNLTYLQVIDLSHNML-----SGSIPLNIVGCFQ 397
LKSL+ L LS NL++ E A G LQ + LS N L +G I L +
Sbjct: 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN--- 388
Query: 398 LLALIVNNNNLSGEIQPELDAL---DSLKILDISNNQI---SGEIPLTLAGLKSLEIVDF 451
L +L ++ N P D+ + ++ L++S+ I IP ++LE++D
Sbjct: 389 LTSLDISRNTF----HPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP------QTLEVLDV 438
Query: 452 SSNNLSGSLNDAITKW-TNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPD 510
S+NNL D+ + + L+ I+RNKL LP+ F + +M S N+ +PD
Sbjct: 439 SNNNL-----DSFSLFLPRLQELYISRNKLK-TLPDASL-FPVLLVMKISRNQLKS-VPD 490
Query: 511 AV 512
+
Sbjct: 491 GI 492
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 10/122 (8%)
Query: 104 KLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKG 163
+LS L+ + + + +GL+TL L+ N + P +I L LREL ++
Sbjct: 102 RLSHLQHXTIDAAGLX-ELPDTXQQFAGLETLTLARNPLRAL-PASIASLNRLRELSIRA 159
Query: 164 NPELGGVFPGWVGNFS-------MNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNL 216
PEL + + +NL+ L + +P S+ L++LK L + + L
Sbjct: 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPL 218
Query: 217 TG 218
+
Sbjct: 219 SA 220
>pdb|3T04|D Chain D, Crystal Structure Of Monobody 7c12ABL1 SH2 DOMAIN COMPLEX
Length = 103
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 446 LEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFM 505
LE+VD + +L S + + W N+KY+ I + G+ P F+ +ST
Sbjct: 14 LEVVDATPTSLKISWDAYYSSWQNVKYYRITYGETGGDSPVQEFTVPGY----YSTATIS 69
Query: 506 GFIP 509
G P
Sbjct: 70 GLKP 73
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 68/141 (48%), Gaps = 12/141 (8%)
Query: 372 TYLQVIDLSHNMLS----GSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDI 427
+Y ++DLSHN LS P + L +L++++N+L+ + +L+ LD+
Sbjct: 39 SYTALLDLSHNNLSRLRAEWTPTRLTN---LHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95
Query: 428 SNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNW 487
S+N + + L++LE++ +N++ +A L+ +++N++S P
Sbjct: 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVE 154
Query: 488 LF----SFQAIQMMDFSTNKF 504
L + ++D S+NK
Sbjct: 155 LIKDGNKLPKLMLLDLSSNKL 175
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 89/203 (43%), Gaps = 41/203 (20%)
Query: 374 LQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPE---LDALDSLKILDISNN 430
++ +DLS N LS I + F L L+ NLS + E L++L +L+ LD++NN
Sbjct: 36 VKELDLSGNPLS-QISAADLAPFTKLELL----NLSSNVLYETLDLESLSTLRTLDLNNN 90
Query: 431 QISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLS--GNLPNWL 488
+ L G S+E + ++NN+S + ++ K +A NK++ +L
Sbjct: 91 YVQE----LLVG-PSIETLHAANNNISRV---SCSRGQGKKNIYLANNKITMLRDLDEGC 142
Query: 489 FSFQAIQMMDFSTNKF--MGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLD 546
S +Q +D N+ + F A D LE+LNL +NF+
Sbjct: 143 RS--RVQYLDLKLNEIDTVNFAELAASSD------------------TLEHLNLQYNFI- 181
Query: 547 GQVPGLYRLRSLRALDLSHNSLT 569
V G L+ LDLS N L
Sbjct: 182 YDVKGQVVFAKLKTLDLSSNKLA 204
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 36/188 (19%)
Query: 343 KITELK------SLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCF 396
++T+LK +L+ L +S+N + +I + + LT L+ + ++N +S PL I+
Sbjct: 161 QVTDLKPLANLTTLERLDISSNK-VSDI-SVLAKLTNLESLIATNNQISDITPLGILTNL 218
Query: 397 QLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLT----------------- 439
L+L N N +I L +L +L LD++NNQIS PL+
Sbjct: 219 DELSL---NGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN 274
Query: 440 ---LAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQM 496
LAGL +L ++ + N L I+ NL Y ++ N +S P + S +Q
Sbjct: 275 ISPLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 330
Query: 497 MDFSTNKF 504
+ F NK
Sbjct: 331 LFFYNNKV 338
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 87/200 (43%), Gaps = 41/200 (20%)
Query: 377 IDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPE---LDALDSLKILDISNNQIS 433
+DLS N LS I + F L L+ NLS + E L++L +L+ LD++NN +
Sbjct: 39 LDLSGNPLS-QISAADLAPFTKLELL----NLSSNVLYETLDLESLSTLRTLDLNNNYVQ 93
Query: 434 GEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLS--GNLPNWLFSF 491
L G S+E + ++NN+S + ++ K +A NK++ +L S
Sbjct: 94 E----LLVG-PSIETLHAANNNISRV---SCSRGQGKKNIYLANNKITMLRDLDEGCRS- 144
Query: 492 QAIQMMDFSTNKF--MGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQV 549
+Q +D N+ + F A D LE+LNL +NF+ V
Sbjct: 145 -RVQYLDLKLNEIDTVNFAELAASSDT------------------LEHLNLQYNFI-YDV 184
Query: 550 PGLYRLRSLRALDLSHNSLT 569
G L+ LDLS N L
Sbjct: 185 KGQVVFAKLKTLDLSSNKLA 204
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
LS L L+L+ N F GLS L+ L + I L+ L+EL + N
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134
Query: 165 PELGGVFPGWVGNFSMNLEKLDFSFN 190
P + N + NLE LD S N
Sbjct: 135 LIQSFKLPEYFSNLT-NLEHLDLSSN 159
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 54/131 (41%), Gaps = 27/131 (20%)
Query: 111 LVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELG-- 168
L LS N S F L+ LDLS + + A L +L LIL GNP
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 169 -GVFPGW---------------VGNFSM----NLEKLDFSFN---SFCGEIPESLYYLKS 205
G F G + NF + L++L+ + N SF ++PE L +
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF--KLPEYFSNLTN 150
Query: 206 LKHLDLEKNNL 216
L+HLDL N +
Sbjct: 151 LEHLDLSSNKI 161
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 64/168 (38%), Gaps = 12/168 (7%)
Query: 418 ALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIAR 477
+L L L ++ N I +GL SL+ + NL+ N I LK ++A
Sbjct: 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133
Query: 478 NKL-SGNLPNWLFSFQAIQMMDFSTNKFMGF----------IPDAVGMDLSDNLLHGTIP 526
N + S LP + + ++ +D S+NK +P I
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193
Query: 527 KGLFQLQGLEYLNLSFNFLDGQVPGLY-RLRSLRALDLSHNSLTGQIP 573
G F+ L+ L L N L G++ RL SL+ + L N P
Sbjct: 194 PGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
LS L L+L+ N F GLS L+ L + I L+ L+EL + N
Sbjct: 76 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 135
Query: 165 PELGGVFPGWVGNFSMNLEKLDFSFN 190
P + N + NLE LD S N
Sbjct: 136 LIQSFKLPEYFSNLT-NLEHLDLSSN 160
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 54/131 (41%), Gaps = 27/131 (20%)
Query: 111 LVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELG-- 168
L LS N S F L+ LDLS + + A L +L LIL GNP
Sbjct: 34 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 169 -GVFPGW---------------VGNFSM----NLEKLDFSFN---SFCGEIPESLYYLKS 205
G F G + NF + L++L+ + N SF ++PE L +
Sbjct: 94 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF--KLPEYFSNLTN 151
Query: 206 LKHLDLEKNNL 216
L+HLDL N +
Sbjct: 152 LEHLDLSSNKI 162
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 64/168 (38%), Gaps = 12/168 (7%)
Query: 418 ALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIAR 477
+L L L ++ N I +GL SL+ + NL+ N I LK ++A
Sbjct: 75 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 134
Query: 478 NKL-SGNLPNWLFSFQAIQMMDFSTNKFMGF----------IPDAVGMDLSDNLLHGTIP 526
N + S LP + + ++ +D S+NK +P I
Sbjct: 135 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 194
Query: 527 KGLFQLQGLEYLNLSFNFLDGQVPGLY-RLRSLRALDLSHNSLTGQIP 573
G F+ L+ L L N L G++ RL SL+ + L N P
Sbjct: 195 PGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 242
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
LS L L+L+ N F GLS L+ L + I L+ L+EL + N
Sbjct: 76 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 135
Query: 165 PELGGVFPGWVGNFSMNLEKLDFSFN 190
P + N + NLE LD S N
Sbjct: 136 LIQSFKLPEYFSNLT-NLEHLDLSSN 160
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 54/131 (41%), Gaps = 27/131 (20%)
Query: 111 LVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELG-- 168
L LS N S F L+ LDLS + + A L +L LIL GNP
Sbjct: 34 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 169 -GVFPGW---------------VGNFSM----NLEKLDFSFN---SFCGEIPESLYYLKS 205
G F G + NF + L++L+ + N SF ++PE L +
Sbjct: 94 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF--KLPEYFSNLTN 151
Query: 206 LKHLDLEKNNL 216
L+HLDL N +
Sbjct: 152 LEHLDLSSNKI 162
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 64/168 (38%), Gaps = 12/168 (7%)
Query: 418 ALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIAR 477
+L L L ++ N I +GL SL+ + NL+ N I LK ++A
Sbjct: 75 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 134
Query: 478 NKL-SGNLPNWLFSFQAIQMMDFSTNKFMGF----------IPDAVGMDLSDNLLHGTIP 526
N + S LP + + ++ +D S+NK +P I
Sbjct: 135 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 194
Query: 527 KGLFQLQGLEYLNLSFNFLDGQVPGLY-RLRSLRALDLSHNSLTGQIP 573
G F+ L+ L L N L G++ RL SL+ + L N P
Sbjct: 195 PGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 242
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
LS L L+L+ N F GLS L+ L + I L+ L+EL + N
Sbjct: 77 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 136
Query: 165 PELGGVFPGWVGNFSMNLEKLDFSFN 190
P + N + NLE LD S N
Sbjct: 137 LIQSFKLPEYFSNLT-NLEHLDLSSN 161
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 54/131 (41%), Gaps = 27/131 (20%)
Query: 111 LVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELG-- 168
L LS N S F L+ LDLS + + A L +L LIL GNP
Sbjct: 35 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 169 -GVFPGW---------------VGNFSM----NLEKLDFSFN---SFCGEIPESLYYLKS 205
G F G + NF + L++L+ + N SF ++PE L +
Sbjct: 95 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF--KLPEYFSNLTN 152
Query: 206 LKHLDLEKNNL 216
L+HLDL N +
Sbjct: 153 LEHLDLSSNKI 163
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 64/168 (38%), Gaps = 12/168 (7%)
Query: 418 ALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIAR 477
+L L L ++ N I +GL SL+ + NL+ N I LK ++A
Sbjct: 76 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 135
Query: 478 NKL-SGNLPNWLFSFQAIQMMDFSTNKFMGF----------IPDAVGMDLSDNLLHGTIP 526
N + S LP + + ++ +D S+NK +P I
Sbjct: 136 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 195
Query: 527 KGLFQLQGLEYLNLSFNFLDGQVPGLY-RLRSLRALDLSHNSLTGQIP 573
G F+ L+ L L N L G++ RL SL+ + L N P
Sbjct: 196 PGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 243
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIM-KLRNLRELILKGNP 165
LE L L+ N F GL+ LK L L N+ + VPD I +L +L+++ L NP
Sbjct: 301 LEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 358
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Query: 82 GHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSN--AFTGRISTCFGGLSGLKTLDLSY 139
HV ++L+ S++ +L L+FL + R +T F GLS L L L Y
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNT-FRGLSSLIILKLDY 88
Query: 140 NKFVGVVPDAIMKLRNLRELILKGNPELGGVFPG 173
N+F+ + A L NL L L G V G
Sbjct: 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSG 122
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 58/162 (35%), Gaps = 1/162 (0%)
Query: 318 AQTTEKAGLVLLDLSHN-RFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQV 376
A T A L LDLS N + P L L L L L P L LQ
Sbjct: 73 AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 132
Query: 377 IDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEI 436
+ L N L L L ++ N +S + L SL L + N+++
Sbjct: 133 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 192
Query: 437 PLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARN 478
P L L + +NNLS +A+ L+Y + N
Sbjct: 193 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 74/177 (41%), Gaps = 16/177 (9%)
Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYN-KFVGVVPDAIMKLRNLRELILK--GN 164
L L L SN + F GL+ L+ LDLS N + V P L L L L G
Sbjct: 57 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 116
Query: 165 PELG-GVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDF 223
ELG G+F G L+ L N+ ++ L +L HL L N ++
Sbjct: 117 QELGPGLFRGLAA-----LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 171
Query: 224 YQSLLVLN---LGSNRFSGTLP-CFAASAMSLTVLKLDNNSVVGGIPT-CIASLQAL 275
++ L L+ L NR + P F +T+ NN + +PT +A L+AL
Sbjct: 172 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN--LSALPTEALAPLRAL 226
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 58/162 (35%), Gaps = 1/162 (0%)
Query: 318 AQTTEKAGLVLLDLSHN-RFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQV 376
A T A L LDLS N + P L L L L L P L LQ
Sbjct: 74 AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133
Query: 377 IDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEI 436
+ L N L L L ++ N +S + L SL L + N+++
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193
Query: 437 PLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARN 478
P L L + +NNLS +A+ L+Y + N
Sbjct: 194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 74/177 (41%), Gaps = 16/177 (9%)
Query: 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYN-KFVGVVPDAIMKLRNLRELILK--GN 164
L L L SN + F GL+ L+ LDLS N + V P L L L L G
Sbjct: 58 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 117
Query: 165 PELG-GVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDF 223
ELG G+F G L+ L N+ ++ L +L HL L N ++
Sbjct: 118 QELGPGLFRGLAA-----LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172
Query: 224 YQSLLVLN---LGSNRFSGTLP-CFAASAMSLTVLKLDNNSVVGGIPT-CIASLQAL 275
++ L L+ L NR + P F +T+ NN + +PT +A L+AL
Sbjct: 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN--LSALPTEALAPLRAL 227
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 3/119 (2%)
Query: 109 EFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELG 168
+ L L N T F L LK L L N+ G +P + ++ G +L
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 169 GVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSL 227
V P V + ++L++L N E+P + L L HL L++N L H + L
Sbjct: 102 -VLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRL 158
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164
LS L L+L+ N F GLS L+ L + I L+ L+EL + N
Sbjct: 77 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHN 136
Query: 165 PELGGVFPGWVGNFSMNLEKLDFSFN 190
P + N + NLE LD S N
Sbjct: 137 LIQSFKLPEYFSNLT-NLEHLDLSSN 161
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 54/131 (41%), Gaps = 27/131 (20%)
Query: 111 LVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELG-- 168
L LS N S F L+ LDLS + + A L +L LIL GNP
Sbjct: 35 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 169 -GVFPGW---------------VGNFSM----NLEKLDFSFN---SFCGEIPESLYYLKS 205
G F G + NF + L++L+ + N SF ++PE L +
Sbjct: 95 LGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSF--KLPEYFSNLTN 152
Query: 206 LKHLDLEKNNL 216
L+HLDL N +
Sbjct: 153 LEHLDLSSNKI 163
>pdb|2R00|C Chain C, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii Complexed With Asa From Vibrio Cholerae
Length = 336
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 311 GPLPSKIAQTTEKAGLVLLD-LSHNRFSGEIPLKITELK-SLQALFLSNNLL 360
G L +K A +AG+V++D SH R+ +IPL + E+ A F + N++
Sbjct: 75 GELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAEFRNRNII 126
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 351 QALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCF-QLLALIVNNNNLS 409
Q L+L+NN + P +L LQ + + N L+ +IP + QL L +N+N+L
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDNHLK 94
Query: 410 GEIQPELDALDSLKILDISNN 430
+ D L SL + + NN
Sbjct: 95 SIPRGAFDNLKSLTHIYLYNN 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,443,003
Number of Sequences: 62578
Number of extensions: 746179
Number of successful extensions: 2533
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 69
Number of HSP's that attempted gapping in prelim test: 1579
Number of HSP's gapped (non-prelim): 524
length of query: 681
length of database: 14,973,337
effective HSP length: 105
effective length of query: 576
effective length of database: 8,402,647
effective search space: 4839924672
effective search space used: 4839924672
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)