Query 005711
Match_columns 681
No_of_seqs 708 out of 5267
Neff 9.8
Searched_HMMs 46136
Date Thu Mar 28 12:35:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005711.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005711hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 4.7E-75 1E-79 689.6 46.7 570 41-619 28-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 3.1E-61 6.6E-66 571.6 36.4 505 106-617 69-586 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 9.2E-42 2E-46 330.2 -13.5 463 108-593 47-541 (565)
4 KOG4194 Membrane glycoprotein 100.0 8.3E-37 1.8E-41 308.5 7.0 377 182-599 80-458 (873)
5 KOG4194 Membrane glycoprotein 100.0 1.1E-36 2.4E-41 307.7 7.0 367 107-480 79-451 (873)
6 KOG0472 Leucine-rich repeat pr 100.0 2.7E-39 5.8E-44 313.2 -12.9 465 84-569 47-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 4.6E-37 1E-41 326.5 -6.5 465 83-591 22-487 (1081)
8 KOG0618 Serine/threonine phosp 100.0 9.2E-35 2E-39 309.1 -2.9 461 83-590 46-510 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 3.2E-34 7E-39 291.5 -2.6 366 82-481 7-375 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 9.4E-34 2E-38 288.1 -1.2 342 129-504 6-351 (1255)
11 PLN03210 Resistant to P. syrin 99.9 4E-23 8.8E-28 245.9 26.6 340 123-503 551-904 (1153)
12 PLN03210 Resistant to P. syrin 99.9 4.6E-23 9.9E-28 245.5 26.1 316 147-501 551-878 (1153)
13 KOG4237 Extracellular matrix p 99.9 5.3E-24 1.1E-28 207.1 -2.2 356 225-590 67-498 (498)
14 PRK15387 E3 ubiquitin-protein 99.9 5.7E-21 1.2E-25 211.3 16.1 262 274-598 202-463 (788)
15 PRK15387 E3 ubiquitin-protein 99.8 1.2E-20 2.6E-25 208.7 16.6 225 297-578 242-467 (788)
16 KOG4237 Extracellular matrix p 99.8 4.1E-23 8.9E-28 201.0 -2.9 379 181-566 68-498 (498)
17 PRK15370 E3 ubiquitin-protein 99.8 6.2E-20 1.3E-24 204.5 17.9 247 38-310 59-359 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 3.9E-19 8.4E-24 198.2 12.1 245 182-457 180-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 4.3E-19 9.2E-24 184.0 2.6 256 87-361 3-291 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 5.8E-19 1.3E-23 183.0 3.6 261 243-503 17-318 (319)
21 KOG0617 Ras suppressor protein 99.7 1.7E-18 3.6E-23 150.0 -5.7 168 101-320 28-195 (264)
22 PLN03150 hypothetical protein; 99.6 1E-15 2.3E-20 170.4 14.1 151 39-192 369-527 (623)
23 KOG0617 Ras suppressor protein 99.6 9.4E-18 2E-22 145.4 -3.1 178 396-596 33-215 (264)
24 PLN03150 hypothetical protein; 99.6 2.6E-15 5.7E-20 167.2 8.5 115 511-625 420-538 (623)
25 KOG0532 Leucine-rich repeat (L 99.2 2.6E-13 5.5E-18 139.1 -4.9 172 372-569 75-247 (722)
26 COG4886 Leucine-rich repeat (L 99.2 4.5E-11 9.8E-16 127.6 7.5 152 421-595 141-292 (394)
27 KOG0532 Leucine-rich repeat (L 99.1 2.6E-12 5.7E-17 131.8 -4.2 170 252-433 78-247 (722)
28 COG4886 Leucine-rich repeat (L 99.1 1.1E-10 2.5E-15 124.5 7.1 200 328-576 97-297 (394)
29 KOG1259 Nischarin, modulator o 99.0 4.7E-11 1E-15 113.3 1.2 64 532-596 351-415 (490)
30 KOG1259 Nischarin, modulator o 99.0 2.5E-10 5.5E-15 108.3 3.2 129 420-571 284-414 (490)
31 KOG1909 Ran GTPase-activating 99.0 7.1E-11 1.5E-15 114.8 -0.6 67 244-310 180-254 (382)
32 KOG1909 Ran GTPase-activating 99.0 9.9E-11 2.1E-15 113.8 -0.2 42 295-336 90-132 (382)
33 KOG3207 Beta-tubulin folding c 98.9 2.1E-10 4.5E-15 114.6 1.0 216 126-363 117-341 (505)
34 KOG3207 Beta-tubulin folding c 98.9 2.9E-10 6.2E-15 113.7 0.1 60 325-385 122-185 (505)
35 KOG4658 Apoptotic ATPase [Sign 98.9 2.5E-09 5.5E-14 122.1 7.5 104 107-213 546-651 (889)
36 PF14580 LRR_9: Leucine-rich r 98.9 2E-09 4.3E-14 98.5 4.9 105 83-193 20-126 (175)
37 PF14580 LRR_9: Leucine-rich r 98.8 3.3E-09 7.2E-14 97.0 4.3 54 532-586 87-146 (175)
38 KOG4658 Apoptotic ATPase [Sign 98.8 4.8E-09 1.1E-13 119.8 5.2 110 103-217 520-631 (889)
39 KOG0531 Protein phosphatase 1, 98.8 1.6E-09 3.4E-14 115.9 1.0 238 325-597 73-322 (414)
40 PF13855 LRR_8: Leucine rich r 98.7 6.3E-09 1.4E-13 78.1 3.1 60 106-165 1-60 (61)
41 PF13855 LRR_8: Leucine rich r 98.7 8.3E-09 1.8E-13 77.4 3.4 60 533-592 1-61 (61)
42 KOG0531 Protein phosphatase 1, 98.6 6.2E-09 1.3E-13 111.4 -0.9 110 104-221 70-179 (414)
43 PF08263 LRRNT_2: Leucine rich 98.4 4.4E-07 9.5E-12 62.2 4.6 38 41-78 2-43 (43)
44 KOG1859 Leucine-rich repeat pr 98.4 1.2E-08 2.6E-13 108.1 -5.8 180 389-595 102-294 (1096)
45 KOG2120 SCF ubiquitin ligase, 98.3 1.3E-08 2.8E-13 96.9 -6.4 150 132-283 187-348 (419)
46 KOG4579 Leucine-rich repeat (L 98.2 6.3E-08 1.4E-12 81.8 -3.2 137 444-600 27-166 (177)
47 KOG2120 SCF ubiquitin ligase, 98.2 3.1E-08 6.8E-13 94.4 -6.6 198 83-283 160-373 (419)
48 KOG1859 Leucine-rich repeat pr 98.2 4.8E-08 1E-12 103.7 -6.4 196 249-457 84-292 (1096)
49 COG5238 RNA1 Ran GTPase-activa 98.0 1.6E-06 3.6E-11 81.8 1.1 16 202-217 155-170 (388)
50 KOG2982 Uncharacterized conser 98.0 2.1E-06 4.5E-11 82.3 1.6 86 104-190 69-156 (418)
51 KOG4579 Leucine-rich repeat (L 97.9 7E-07 1.5E-11 75.6 -2.4 114 444-577 53-167 (177)
52 COG5238 RNA1 Ran GTPase-activa 97.8 5.8E-06 1.3E-10 78.2 1.5 202 269-482 26-256 (388)
53 KOG2982 Uncharacterized conser 97.8 7.6E-06 1.6E-10 78.5 2.3 60 529-588 220-287 (418)
54 PRK15386 type III secretion pr 97.7 7.6E-05 1.7E-09 77.0 7.1 135 416-567 48-188 (426)
55 PF12799 LRR_4: Leucine Rich r 97.7 5.6E-05 1.2E-09 51.8 3.7 38 180-218 1-38 (44)
56 PF12799 LRR_4: Leucine Rich r 97.6 4.2E-05 9.1E-10 52.5 2.3 35 534-569 2-37 (44)
57 PRK15386 type III secretion pr 97.6 0.0003 6.4E-09 72.8 9.5 58 101-164 47-104 (426)
58 KOG1644 U2-associated snRNP A' 97.2 0.00051 1.1E-08 62.7 5.4 104 107-213 43-149 (233)
59 KOG3665 ZYG-1-like serine/thre 97.2 0.00018 3.9E-09 80.8 2.6 64 154-217 122-186 (699)
60 PF13306 LRR_5: Leucine rich r 97.1 0.0024 5.3E-08 55.9 8.7 122 343-470 7-128 (129)
61 KOG3665 ZYG-1-like serine/thre 97.1 0.00032 6.9E-09 78.8 3.5 133 83-218 123-264 (699)
62 KOG1644 U2-associated snRNP A' 97.0 0.0011 2.4E-08 60.6 5.5 35 531-565 111-149 (233)
63 KOG4341 F-box protein containi 96.8 0.00011 2.3E-09 74.2 -3.0 84 131-214 139-226 (483)
64 KOG2739 Leucine-rich acidic nu 96.8 0.0008 1.7E-08 64.1 2.4 37 128-164 63-101 (260)
65 PF13306 LRR_5: Leucine rich r 96.7 0.0065 1.4E-07 53.2 7.9 107 366-477 6-112 (129)
66 KOG4341 F-box protein containi 96.6 0.00013 2.7E-09 73.7 -4.3 108 106-213 138-251 (483)
67 KOG2739 Leucine-rich acidic nu 95.7 0.0073 1.6E-07 57.8 2.6 60 324-385 65-129 (260)
68 KOG2123 Uncharacterized conser 95.2 0.00086 1.9E-08 64.2 -5.1 78 83-164 20-98 (388)
69 PF00560 LRR_1: Leucine Rich R 95.2 0.0061 1.3E-07 34.6 0.3 19 132-151 2-20 (22)
70 PF00560 LRR_1: Leucine Rich R 95.2 0.0071 1.5E-07 34.4 0.5 19 558-577 2-20 (22)
71 KOG2123 Uncharacterized conser 93.9 0.0039 8.4E-08 59.8 -4.1 61 325-387 42-103 (388)
72 KOG1947 Leucine rich repeat pr 93.7 0.0071 1.5E-07 66.4 -3.3 60 325-384 244-307 (482)
73 KOG0473 Leucine-rich repeat pr 93.1 0.0025 5.3E-08 59.5 -6.6 83 80-165 40-122 (326)
74 KOG1947 Leucine rich repeat pr 92.7 0.013 2.8E-07 64.3 -3.1 113 104-216 186-307 (482)
75 KOG4308 LRR-containing protein 92.5 0.0016 3.4E-08 70.1 -10.3 87 274-360 88-184 (478)
76 PF13504 LRR_7: Leucine rich r 90.5 0.18 3.9E-06 26.5 1.4 13 131-143 2-14 (17)
77 KOG4308 LRR-containing protein 90.0 0.0022 4.7E-08 69.0 -12.2 87 251-337 89-185 (478)
78 KOG3864 Uncharacterized conser 90.0 0.034 7.5E-07 51.1 -2.7 83 131-213 102-185 (221)
79 KOG0473 Leucine-rich repeat pr 87.6 0.027 5.9E-07 52.8 -5.1 64 527-592 59-123 (326)
80 smart00370 LRR Leucine-rich re 84.9 0.79 1.7E-05 27.0 2.0 14 130-143 2-15 (26)
81 smart00369 LRR_TYP Leucine-ric 84.9 0.79 1.7E-05 27.0 2.0 14 130-143 2-15 (26)
82 smart00370 LRR Leucine-rich re 84.9 0.73 1.6E-05 27.2 1.8 14 556-569 2-15 (26)
83 smart00369 LRR_TYP Leucine-ric 84.9 0.73 1.6E-05 27.2 1.8 14 556-569 2-15 (26)
84 KOG3864 Uncharacterized conser 83.0 0.25 5.5E-06 45.6 -1.1 81 83-163 102-185 (221)
85 PF13516 LRR_6: Leucine Rich r 80.9 0.62 1.3E-05 26.9 0.4 13 445-457 3-15 (24)
86 smart00365 LRR_SD22 Leucine-ri 65.3 5.7 0.00012 23.6 1.9 14 556-569 2-15 (26)
87 smart00364 LRR_BAC Leucine-ric 62.9 5.4 0.00012 23.6 1.4 13 557-569 3-15 (26)
88 smart00368 LRR_RI Leucine rich 57.6 8.7 0.00019 23.1 1.8 14 556-569 2-15 (28)
89 TIGR00864 PCC polycystin catio 56.5 6.2 0.00013 50.8 1.9 37 562-598 1-37 (2740)
90 PF15102 TMEM154: TMEM154 prot 56.1 5.6 0.00012 34.8 1.1 30 649-678 59-88 (146)
91 KOG4242 Predicted myosin-I-bin 48.2 82 0.0018 33.6 8.0 84 421-504 355-452 (553)
92 KOG3763 mRNA export factor TAP 42.0 11 0.00024 40.6 0.9 12 227-238 272-283 (585)
93 KOG3763 mRNA export factor TAP 36.5 17 0.00036 39.3 1.1 64 507-571 216-285 (585)
94 PF05393 Hum_adeno_E3A: Human 34.4 12 0.00025 29.3 -0.3 14 660-673 47-60 (94)
95 PF02439 Adeno_E3_CR2: Adenovi 32.4 12 0.00025 24.4 -0.5 12 653-664 10-21 (38)
96 smart00367 LRR_CC Leucine-rich 31.6 41 0.00088 19.6 1.8 11 154-164 2-12 (26)
97 KOG4242 Predicted myosin-I-bin 27.5 86 0.0019 33.4 4.4 109 347-457 164-281 (553)
98 PF01102 Glycophorin_A: Glycop 23.3 15 0.00033 31.3 -1.5 8 652-659 70-77 (122)
99 PF04478 Mid2: Mid2 like cell 22.3 46 0.001 29.5 1.2 10 653-662 56-65 (154)
100 PHA03265 envelope glycoprotein 20.4 60 0.0013 32.8 1.7 24 654-677 357-380 (402)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.7e-75 Score=689.59 Aligned_cols=570 Identities=37% Similarity=0.581 Sum_probs=537.0
Q ss_pred HHhHHHHHHHHhcCCCCCCCCCCC-CCCCCCCCCceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCC
Q 005711 41 LEDKASLLLFKSLVQDPTQKLSSW-VGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFT 119 (681)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~~~~~w-~~~~cc~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~ 119 (681)
++|+.||++||+.+.+|.+.+.+| ..++||.|+||+|+ ..++|++|+|+++.+.|.+++.+..+++|++|+|++|.+.
T Consensus 28 ~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~-~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~ 106 (968)
T PLN00113 28 AEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCN-NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS 106 (968)
T ss_pred HHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecC-CCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccC
Confidence 467789999999998887778999 56799999999998 4679999999999999999999999999999999999999
Q ss_pred cccccccc-CCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCcCccccCc
Q 005711 120 GRISTCFG-GLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPE 198 (681)
Q Consensus 120 ~~~~~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~ 198 (681)
+.+|..+. .+++|++|+|++|++++.+|. +.+++|++|++++| .+.+.+|..++++ ++|++|++++|.+.+.+|.
T Consensus 107 ~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n-~~~~~~p~~~~~l-~~L~~L~L~~n~l~~~~p~ 182 (968)
T PLN00113 107 GPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNN-MLSGEIPNDIGSF-SSLKVLDLGGNVLVGKIPN 182 (968)
T ss_pred CcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCC-cccccCChHHhcC-CCCCEEECccCcccccCCh
Confidence 88887655 999999999999999998886 56899999999999 5678899999999 8999999999999999999
Q ss_pred cccCCCCCCEEEccCccCcccccCcC---CcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcc
Q 005711 199 SLYYLKSLKHLDLEKNNLTGNVHDFY---QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQAL 275 (681)
Q Consensus 199 ~l~~l~~L~~L~L~~n~l~~~~~~~~---~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L 275 (681)
.++++++|++|++++|.+.+.+|..+ .+|++|++++|.+++.+|..++.+++|++|++++|.+.+.+|..++++++|
T Consensus 183 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 262 (968)
T PLN00113 183 SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNL 262 (968)
T ss_pred hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCC
Confidence 99999999999999999999888755 459999999999999999999999999999999999999999999999999
Q ss_pred cEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEec
Q 005711 276 THLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFL 355 (681)
Q Consensus 276 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 355 (681)
++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+. +|+.|++++|.+++.+|..+..+++|+.|++
T Consensus 263 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~---~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 339 (968)
T PLN00113 263 QYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ---NLEILHLFSNNFTGKIPVALTSLPRLQVLQL 339 (968)
T ss_pred CEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCC---CCcEEECCCCccCCcCChhHhcCCCCCEEEC
Confidence 9999999999999999999999999999999999999999888776 8999999999999999999999999999999
Q ss_pred cCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceec
Q 005711 356 SNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGE 435 (681)
Q Consensus 356 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 435 (681)
++|.+.+.+|..++.+++|+.|++++|.+.+.+|..+..+.+|+.+++++|.+.+.+|..+..+++|+.|++++|.+++.
T Consensus 340 ~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~ 419 (968)
T PLN00113 340 WSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE 419 (968)
T ss_pred cCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccCCCC-----
Q 005711 436 IPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPD----- 510 (681)
Q Consensus 436 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~----- 510 (681)
+|..+..++.|+.|++++|.+++.++..+..+++|++|++++|++.+.+|..+ ...+|+.||+++|++++.+|.
T Consensus 420 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l 498 (968)
T PLN00113 420 LPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSL 498 (968)
T ss_pred CChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhh
Confidence 99999999999999999999999999999999999999999999999888765 468999999999999988764
Q ss_pred --CcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEec
Q 005711 511 --AVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNL 587 (681)
Q Consensus 511 --~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 587 (681)
...|+|++|+++|.+|..+.++++|++|+|++|.+++.+|. +..+++|+.|||++|+++|.+|..+..+++|+.+++
T Consensus 499 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l 578 (968)
T PLN00113 499 SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNI 578 (968)
T ss_pred hccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEec
Confidence 45799999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred ccCcceeeCCCCCCCCCccc-cccCCCCCCCCC
Q 005711 588 SYNSFSGFVPWKQGYQKFPG-AFAGNPNLCLES 619 (681)
Q Consensus 588 s~N~l~~~~p~~~~~~~~~~-~~~gn~~lc~~~ 619 (681)
++|++.|.+|..+++.++.. ++.||+.+||.+
T Consensus 579 s~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 579 SHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred cCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 99999999999999988877 899999999864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.1e-61 Score=571.56 Aligned_cols=505 Identities=37% Similarity=0.515 Sum_probs=471.9
Q ss_pred CCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCcccc-CCCCCCEeeCCCCCCCCccCCchhccccCCccE
Q 005711 106 SFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIM-KLRNLRELILKGNPELGGVFPGWVGNFSMNLEK 184 (681)
Q Consensus 106 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~ 184 (681)
.+++.|||++|.+++.++..|..+++|++|+|++|++++.+|..+. ++++|++|++++| .+.+.+|. +.+ ++|++
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n-~l~~~~p~--~~l-~~L~~ 144 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN-NFTGSIPR--GSI-PNLET 144 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC-ccccccCc--ccc-CCCCE
Confidence 4789999999999999999999999999999999999999998765 9999999999999 45667775 345 89999
Q ss_pred EEccCCcCccccCccccCCCCCCEEEccCccCcccccCcC---CcccEEECCCCCCccccchhhccCCCCCEEEccCCcc
Q 005711 185 LDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFY---QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSV 261 (681)
Q Consensus 185 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~---~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 261 (681)
|++++|.+.+.+|..++++++|++|++++|.+.+..|..+ .+|++|++++|.+++.+|..+.++++|++|++++|++
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence 9999999999999999999999999999999998888765 4599999999999999999999999999999999999
Q ss_pred ccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCc
Q 005711 262 VGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIP 341 (681)
Q Consensus 262 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p 341 (681)
.+.+|..++++++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|..+..+. +|+.|++++|.+.+.+|
T Consensus 225 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~---~L~~L~Ls~n~l~~~~p 301 (968)
T PLN00113 225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ---KLISLDLSDNSLSGEIP 301 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhcc---CcCEEECcCCeeccCCC
Confidence 999999999999999999999999999999999999999999999999999999988777 89999999999999999
Q ss_pred ccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCC
Q 005711 342 LKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDS 421 (681)
Q Consensus 342 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 421 (681)
..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++
T Consensus 302 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~ 381 (968)
T PLN00113 302 ELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGN 381 (968)
T ss_pred hhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeeccc
Q 005711 422 LKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFST 501 (681)
Q Consensus 422 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~ 501 (681)
|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++
T Consensus 382 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 461 (968)
T PLN00113 382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461 (968)
T ss_pred CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCC------CcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCc
Q 005711 502 NKFMGFIPD------AVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPG 574 (681)
Q Consensus 502 n~~~~~~p~------~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~ 574 (681)
|++.+.+|. ...||+++|+++|.+|..+.++++|+.|+|++|++++.+|. +.++++|++|++++|.++|.+|.
T Consensus 462 n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 541 (968)
T PLN00113 462 NKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA 541 (968)
T ss_pred ceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCCh
Confidence 999988875 35799999999999999999999999999999999999998 99999999999999999999999
Q ss_pred cccCCCCCCeEecccCcceeeCCCCC-CCCCccc-cccCCCCCCC
Q 005711 575 NISSLQELTLLNLSYNSFSGFVPWKQ-GYQKFPG-AFAGNPNLCL 617 (681)
Q Consensus 575 ~l~~l~~L~~L~ls~N~l~~~~p~~~-~~~~~~~-~~~gn~~lc~ 617 (681)
.+..+++|+.|++++|+++|.+|... .+..+.. ++.+|+..+.
T Consensus 542 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~ 586 (968)
T PLN00113 542 SFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGS 586 (968)
T ss_pred hHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceee
Confidence 99999999999999999999998643 2223333 6777776553
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=9.2e-42 Score=330.22 Aligned_cols=463 Identities=29% Similarity=0.393 Sum_probs=289.5
Q ss_pred CCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEc
Q 005711 108 LEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDF 187 (681)
Q Consensus 108 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L 187 (681)
|+.+++++|.+.... +.+.++..|.+|++++|+++ ..|++++.+..++.++.++|+. ..+|..++.+ .+|.+++.
T Consensus 47 l~~lils~N~l~~l~-~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~l--s~lp~~i~s~-~~l~~l~~ 121 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLR-EDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKL--SELPEQIGSL-ISLVKLDC 121 (565)
T ss_pred hhhhhhccCchhhcc-HhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchH--hhccHHHhhh-hhhhhhhc
Confidence 344445555544322 22455555555555555555 4455555555555555555533 3455555555 55555555
Q ss_pred cCCcCccccCccccCCCCCCEEEccCccCcccccCcC--CcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCC
Q 005711 188 SFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFY--QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGI 265 (681)
Q Consensus 188 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~--~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 265 (681)
++|.+. .+|++++.+..|+.++..+|+++..+++.+ .++..+++.+|++....|..+ +++.|++||...|-++ .+
T Consensus 122 s~n~~~-el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~-tl 198 (565)
T KOG0472|consen 122 SSNELK-ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE-TL 198 (565)
T ss_pred ccccee-ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhh-cC
Confidence 555555 455555555555555555555554443322 224555555565553334444 4888999998888776 68
Q ss_pred ChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCccccc
Q 005711 266 PTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKIT 345 (681)
Q Consensus 266 p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~ 345 (681)
|..++.+.+|.-|++.+|.+. ..| +|..+..|.++.++.|++. .+|.... +.+.++.+||+.+|+++ ..|..+.
T Consensus 199 P~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~--~~L~~l~vLDLRdNklk-e~Pde~c 272 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHL--KHLNSLLVLDLRDNKLK-EVPDEIC 272 (565)
T ss_pred ChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHh--cccccceeeeccccccc-cCchHHH
Confidence 888999999999999999887 455 7888999999999999887 6666654 22337889999999998 7888888
Q ss_pred CCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCC---cceee-------ccccc---c-ccc
Q 005711 346 ELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQ---LLALI-------VNNNN---L-SGE 411 (681)
Q Consensus 346 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~---L~~L~-------l~~n~---l-~~~ 411 (681)
.+.+|++||+++|.+++ +|..++++ .|+.|.+.+|.+.. +-..+..+.. |++|. ++.-. - .+.
T Consensus 273 lLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t 349 (565)
T KOG0472|consen 273 LLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRT-IRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMT 349 (565)
T ss_pred HhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHH-HHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCC
Confidence 88999999999999884 56678888 89999999988642 2111111110 11111 00000 0 000
Q ss_pred -Cc---cccCCCCCccEEEcccCcceeccccccCCCCC---CcEEECCCCcCCCcchhhhhcCCCCCE-EEccCCcCccc
Q 005711 412 -IQ---PELDALDSLKILDISNNQISGEIPLTLAGLKS---LEIVDFSSNNLSGSLNDAITKWTNLKY-FSIARNKLSGN 483 (681)
Q Consensus 412 -~~---~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~---L~~L~L~~n~l~~~~~~~~~~l~~L~~-L~L~~n~l~~~ 483 (681)
.+ .....+.+.+.|++++-+++ .+|.......+ ....+++.|++. .+|..+..+..+.+ +.+++|.+ +-
T Consensus 350 ~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sf 426 (565)
T KOG0472|consen 350 LPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SF 426 (565)
T ss_pred CCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-cc
Confidence 00 11123445566666666655 33433222222 455566666654 44444444333322 22333332 24
Q ss_pred CCcccccCCccceeecccCccccCCC-------CCcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCC
Q 005711 484 LPNWLFSFQAIQMMDFSTNKFMGFIP-------DAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRL 555 (681)
Q Consensus 484 ~p~~~~~l~~L~~L~ls~n~~~~~~p-------~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l 555 (681)
+|..++.++.|..|++++|-+.. +| ..+.||+|.|+|. .+|..+..+..++.+-.++|++....|+ +.+|
T Consensus 427 v~~~l~~l~kLt~L~L~NN~Ln~-LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm 504 (565)
T KOG0472|consen 427 VPLELSQLQKLTFLDLSNNLLND-LPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNM 504 (565)
T ss_pred chHHHHhhhcceeeecccchhhh-cchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhh
Confidence 45555555555555555543321 22 1234555555555 8899888888899998899999977777 9999
Q ss_pred CCCCEEECCCCcCcccCCccccCCCCCCeEecccCcce
Q 005711 556 RSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFS 593 (681)
Q Consensus 556 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 593 (681)
.+|.+|||.+|.+. .||..++++++|++|++++|+|.
T Consensus 505 ~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 505 RNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 99999999999999 78889999999999999999998
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=8.3e-37 Score=308.55 Aligned_cols=377 Identities=24% Similarity=0.256 Sum_probs=266.0
Q ss_pred ccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCcc
Q 005711 182 LEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSV 261 (681)
Q Consensus 182 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 261 (681)
-+.||+++|.+...-+..|.++++|+.+++.+|.++ .+|...+...+++.|+|.+|.+
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt----------------------~IP~f~~~sghl~~L~L~~N~I 137 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT----------------------RIPRFGHESGHLEKLDLRHNLI 137 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhh----------------------hcccccccccceeEEeeecccc
Confidence 456777777777666666777777777777776665 3333333334455555555555
Q ss_pred ccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCc
Q 005711 262 VGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIP 341 (681)
Q Consensus 262 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p 341 (681)
+..-...+..++.|+.|||+.|.++......+..-.++++|+|++|.++..-...|..+. +|..|.|+.|+++...+
T Consensus 138 ~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~ln---sL~tlkLsrNrittLp~ 214 (873)
T KOG4194|consen 138 SSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLN---SLLTLKLSRNRITTLPQ 214 (873)
T ss_pred ccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccc---hheeeecccCcccccCH
Confidence 544444555555566666666655543334444455666666666666654444444444 56666777777765445
Q ss_pred ccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCC
Q 005711 342 LKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDS 421 (681)
Q Consensus 342 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 421 (681)
..|.+++.|+.|+|..|++.-.---.|.++++|+.|.+..|.+...-...|.++.++++|+++.|++...-..++.++++
T Consensus 215 r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~ 294 (873)
T KOG4194|consen 215 RSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTS 294 (873)
T ss_pred HHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccch
Confidence 56666777777777777765333345667777777777777776655666777777777777777777666667777888
Q ss_pred ccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeeccc
Q 005711 422 LKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFST 501 (681)
Q Consensus 422 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~ 501 (681)
|+.|++|+|.+...-++.+..+++|++|+|++|+++..-+..+..+..|++|+|++|.+...-...+..+++|+.|||++
T Consensus 295 L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~ 374 (873)
T KOG4194|consen 295 LEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRS 374 (873)
T ss_pred hhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcC
Confidence 88888888888877778888888888888888888877777788888888888888888755455566777888887777
Q ss_pred CccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCC--cCCCCCCCEEECCCCcCcccCCccccCC
Q 005711 502 NKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG--LYRLRSLRALDLSHNSLTGQIPGNISSL 579 (681)
Q Consensus 502 n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~--~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 579 (681)
|.+++.+.+ -...|..+++|+.|+|.+|++. .||. +.++..||.|||.+|.+-..-|..|..+
T Consensus 375 N~ls~~IED--------------aa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 375 NELSWCIED--------------AAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM 439 (873)
T ss_pred CeEEEEEec--------------chhhhccchhhhheeecCceee-ecchhhhccCcccceecCCCCcceeecccccccc
Confidence 777665431 1234667999999999999999 5665 8899999999999999998999999998
Q ss_pred CCCCeEecccCcceeeCCCC
Q 005711 580 QELTLLNLSYNSFSGFVPWK 599 (681)
Q Consensus 580 ~~L~~L~ls~N~l~~~~p~~ 599 (681)
.|+.|-+..-.|-|.|.-.
T Consensus 440 -~Lk~Lv~nSssflCDCql~ 458 (873)
T KOG4194|consen 440 -ELKELVMNSSSFLCDCQLK 458 (873)
T ss_pred -hhhhhhhcccceEEeccHH
Confidence 9999999988888877533
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-36 Score=307.67 Aligned_cols=367 Identities=24% Similarity=0.224 Sum_probs=297.9
Q ss_pred CCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEE
Q 005711 107 FLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLD 186 (681)
Q Consensus 107 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~ 186 (681)
.-+.||+++|.+...-+..|.++++|+.+++.+|.++ .+|...+...+|+.|+|.+| .+...-...+..+ +.|+.||
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l-~alrslD 155 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHN-LISSVTSEELSAL-PALRSLD 155 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeecc-ccccccHHHHHhH-hhhhhhh
Confidence 4567999999999888888999999999999999998 77876667778999999999 5555555667777 7899999
Q ss_pred ccCCcCccccCccccCCCCCCEEEccCccCcccccCcCC---cccEEECCCCCCccccchhhccCCCCCEEEccCCcccc
Q 005711 187 FSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQ---SLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVG 263 (681)
Q Consensus 187 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 263 (681)
|+.|.++..--.+|..-.++++|+|++|.++..-...|. +|..|.|+.|+++...+..|.++++|+.|+|..|++.-
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri 235 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI 235 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence 999998854444566667899999999998876655544 47888899999986666777778999999999988874
Q ss_pred CCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCccc
Q 005711 264 GIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLK 343 (681)
Q Consensus 264 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~ 343 (681)
.--..|.++++|+.|.+..|.+.......|..+.+++.|+|+.|+++..-..++..++ .|+.|++|+|.|..+-++.
T Consensus 236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt---~L~~L~lS~NaI~rih~d~ 312 (873)
T KOG4194|consen 236 VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT---SLEQLDLSYNAIQRIHIDS 312 (873)
T ss_pred ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccc---hhhhhccchhhhheeecch
Confidence 4455678888899999999988877777788888899999999888765555666666 7888899999888777888
Q ss_pred ccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCcc---ccCCCC
Q 005711 344 ITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQP---ELDALD 420 (681)
Q Consensus 344 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~l~ 420 (681)
+.-+++|++|+|++|+++...+..|..+..|++|.|++|.+...-...|.++.+|++|++++|.+++.+.+ .|..++
T Consensus 313 WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~ 392 (873)
T KOG4194|consen 313 WSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLP 392 (873)
T ss_pred hhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccch
Confidence 88888899999999988877777888888888899999888866667778888888888888888876543 467788
Q ss_pred CccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcC
Q 005711 421 SLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKL 480 (681)
Q Consensus 421 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 480 (681)
+|+.|++.+|++.......|.+++.|++|||.+|.+...-|++|..+ .|+.|.+..-.|
T Consensus 393 ~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf 451 (873)
T KOG4194|consen 393 SLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF 451 (873)
T ss_pred hhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence 88888888888887666788888888888888888887778888887 888887765444
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.7e-39 Score=313.19 Aligned_cols=465 Identities=27% Similarity=0.370 Sum_probs=361.7
Q ss_pred EEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCC
Q 005711 84 VVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKG 163 (681)
Q Consensus 84 v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 163 (681)
...+.++.|.+. .+.+.+.++..|.+|++++|++. ..|++++.+..++.|+.++|+++ .+|..++.+.+|+.++.++
T Consensus 47 l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 47 LQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred hhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccc
Confidence 445678888775 45567889999999999999987 56778999999999999999998 8899999999999999999
Q ss_pred CCCCCccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCc--CCcccEEECCCCCCcccc
Q 005711 164 NPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDF--YQSLLVLNLGSNRFSGTL 241 (681)
Q Consensus 164 n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~--~~~L~~L~L~~n~l~~~~ 241 (681)
|.. ..+|..++.+ ..|+.++..+|+++ ..|+.+.++.+|..+++.+|++....|.. +..|++||...|.++ .+
T Consensus 124 n~~--~el~~~i~~~-~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tl 198 (565)
T KOG0472|consen 124 NEL--KELPDSIGRL-LDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TL 198 (565)
T ss_pred cce--eecCchHHHH-hhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cC
Confidence 954 5688888888 79999999999998 78899999999999999999998776654 456999999999885 89
Q ss_pred chhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccc-cCCCCCcEEeccCCCccCCCChhhhhc
Q 005711 242 PCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRL-VFFEKLLLLDLSFNDLSGPLPSKIAQT 320 (681)
Q Consensus 242 ~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~p~~~~~~ 320 (681)
|..++.+.+|+.|++..|++. ..| .|..+..|+++.++.|++. .+|... ..++++..||+.+|+++ ..|..+..+
T Consensus 199 P~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clL 274 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLL 274 (565)
T ss_pred ChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHh
Confidence 999999999999999999997 466 7999999999999999987 566555 48999999999999998 789988877
Q ss_pred ccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCC--CCCEEE-------ccCCc----Cccc
Q 005711 321 TEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLT--YLQVID-------LSHNM----LSGS 387 (681)
Q Consensus 321 ~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~-------Ls~n~----l~~~ 387 (681)
. +|++||+|+|.++ .+|..++++ .|+.|-+.+|.+...-.+.+..-+ -|++|. ++... -.+.
T Consensus 275 r---sL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t 349 (565)
T KOG0472|consen 275 R---SLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMT 349 (565)
T ss_pred h---hhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCC
Confidence 7 8999999999999 688899999 899999999987422111110000 011110 11110 0011
Q ss_pred -cCcc---cccCCCcceeecccccccccCccccCC--CCCccEEEcccCcceeccccccCCCCCCcEE-ECCCCcCCCcc
Q 005711 388 -IPLN---IVGCFQLLALIVNNNNLSGEIQPELDA--LDSLKILDISNNQISGEIPLTLAGLKSLEIV-DFSSNNLSGSL 460 (681)
Q Consensus 388 -~p~~---~~~~~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L-~L~~n~l~~~~ 460 (681)
.+.. .....+.+.|+++.-+++......|.. -.-....+++.|++. ++|..+..++.+.+. ++++|.+ +-+
T Consensus 350 ~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv 427 (565)
T KOG0472|consen 350 LPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFV 427 (565)
T ss_pred CCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccc
Confidence 1111 123345667777777777433333322 223778899999988 778777777666544 4555555 467
Q ss_pred hhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccCCCCCc-------ccccCCccccccCCccccccc
Q 005711 461 NDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAV-------GMDLSDNLLHGTIPKGLFQLQ 533 (681)
Q Consensus 461 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~-------~L~Ls~N~l~g~ip~~l~~l~ 533 (681)
|..+..+++|+.|++++|.+. .+|..++.+..|+.+|++.|+|. .+|... .+-.++|++...-|..+.++.
T Consensus 428 ~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~ 505 (565)
T KOG0472|consen 428 PLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMR 505 (565)
T ss_pred hHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhh
Confidence 788888999999999988876 78888899999999999999886 345432 344556888744455599999
Q ss_pred ccceeecCCCcCcccCCCcCCCCCCCEEECCCCcCc
Q 005711 534 GLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLT 569 (681)
Q Consensus 534 ~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~N~l~ 569 (681)
+|..|||.+|.+...+|.++++++|+.|++++|.+.
T Consensus 506 nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 506 NLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 999999999999955555999999999999999998
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-37 Score=326.50 Aligned_cols=465 Identities=27% Similarity=0.297 Sum_probs=281.9
Q ss_pred cEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCC
Q 005711 83 HVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILK 162 (681)
Q Consensus 83 ~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 162 (681)
+++.|++..|.+-...-+.+.+..+|+.||+++|.+. ..|..+..+.+|+.|+++.|.+. ..|.+..++.+|++|+|.
T Consensus 22 ~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~ 99 (1081)
T KOG0618|consen 22 ALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLK 99 (1081)
T ss_pred HHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheec
Confidence 3666677666554322233444555888888887775 46667777888888888888777 667778888888888888
Q ss_pred CCCCCCccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccc
Q 005711 163 GNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLP 242 (681)
Q Consensus 163 ~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~ 242 (681)
+|.. ...|..+..+ .+|++|++++|.+. .+|..+..++.++.+..++|......+... ++.+++..|.+.+.++
T Consensus 100 ~n~l--~~lP~~~~~l-knl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~--ik~~~l~~n~l~~~~~ 173 (1081)
T KOG0618|consen 100 NNRL--QSLPASISEL-KNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTS--IKKLDLRLNVLGGSFL 173 (1081)
T ss_pred cchh--hcCchhHHhh-hcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhcccc--chhhhhhhhhcccchh
Confidence 8743 5677777777 78888888888876 777777777777777787772222222222 6677777777777777
Q ss_pred hhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhccc
Q 005711 243 CFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTE 322 (681)
Q Consensus 243 ~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~ 322 (681)
..+..++. .|+|.+|.+. -..+..+.+|+.|....|++... -..-++|+.|+.+.|.++...+...
T Consensus 174 ~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~~~~~p~----- 239 (1081)
T KOG0618|consen 174 IDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNPLTTLDVHPV----- 239 (1081)
T ss_pred cchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceE----EecCcchheeeeccCcceeeccccc-----
Confidence 77776666 6777777765 23455666777777777765421 1234566677777776663322221
Q ss_pred CCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceee
Q 005711 323 KAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALI 402 (681)
Q Consensus 323 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ 402 (681)
..+|+++++++|+++ .+|.|++.+.+|+.++..+|.++ .+|..+...++|+.|.+..|.++ -+|....+...|++|+
T Consensus 240 p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLD 316 (1081)
T ss_pred cccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeee
Confidence 126777777777776 45677777777777777777764 55666666667777777777766 4555566666677777
Q ss_pred cccccccccCccccCCCCC-ccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCc
Q 005711 403 VNNNNLSGEIQPELDALDS-LKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLS 481 (681)
Q Consensus 403 l~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 481 (681)
+..|++....+..+..... |+.|+.+.|.+.......=...+.|+.|.+.+|.++......+.++.+|+.|+|++|++.
T Consensus 317 L~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 317 LQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred ehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence 7766665433322222222 555555555555222111123455666666666666665556666666666666666665
Q ss_pred ccCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCCcCCCCCCCEE
Q 005711 482 GNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRAL 561 (681)
Q Consensus 482 ~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L 561 (681)
......+.++..|++|++|+|+++ .+|..+.++..|++|...+|++. ..|++..++.|+.+
T Consensus 397 ~fpas~~~kle~LeeL~LSGNkL~------------------~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~l 457 (1081)
T KOG0618|consen 397 SFPASKLRKLEELEELNLSGNKLT------------------TLPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVL 457 (1081)
T ss_pred cCCHHHHhchHHhHHHhcccchhh------------------hhhHHHHhhhhhHHHhhcCCcee-echhhhhcCcceEE
Confidence 322234445555555555555544 44555555555555555555554 34444455555555
Q ss_pred ECCCCcCcccCCccccCCCCCCeEecccCc
Q 005711 562 DLSHNSLTGQIPGNISSLQELTLLNLSYNS 591 (681)
Q Consensus 562 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~ 591 (681)
|+|.|+++...-..-...+.|++||+++|.
T Consensus 458 DlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 458 DLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred ecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 555555543221111122455555555554
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.98 E-value=9.2e-35 Score=309.08 Aligned_cols=461 Identities=28% Similarity=0.321 Sum_probs=370.9
Q ss_pred cEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCC
Q 005711 83 HVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILK 162 (681)
Q Consensus 83 ~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 162 (681)
++.+||++++.+. ..|..+..+.+|+.|+++.|.+. ..|.+..++++|++|+|.+|.+. ..|..+..+.+|++|+++
T Consensus 46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccc
Confidence 4789999998765 67888999999999999999987 46788999999999999999988 789999999999999999
Q ss_pred CCCCCCccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccE-EECCCCCCcccc
Q 005711 163 GNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLV-LNLGSNRFSGTL 241 (681)
Q Consensus 163 ~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~-L~L~~n~l~~~~ 241 (681)
+|.+ +.+|..+..+ +.++.+..++|.... .++... ++.+++..|.+.+.++.....+++ |+|.+|.+.
T Consensus 123 ~N~f--~~~Pl~i~~l-t~~~~~~~s~N~~~~----~lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~--- 191 (1081)
T KOG0618|consen 123 FNHF--GPIPLVIEVL-TAEEELAASNNEKIQ----RLGQTS-IKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME--- 191 (1081)
T ss_pred hhcc--CCCchhHHhh-hHHHHHhhhcchhhh----hhcccc-chhhhhhhhhcccchhcchhhhheeeecccchhh---
Confidence 9954 7788888888 788999999993221 233333 889999999999988888888777 999999985
Q ss_pred chhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcc
Q 005711 242 PCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTT 321 (681)
Q Consensus 242 ~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~ 321 (681)
...+.++.+|+.|....|++.... -.-++|+.|+.++|.++...+ -....+|++++++.|+++ .+|++++.+.
T Consensus 192 ~~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~ 264 (1081)
T KOG0618|consen 192 VLDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLPEWIGACA 264 (1081)
T ss_pred hhhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeecc--ccccccceeeecchhhhh-cchHHHHhcc
Confidence 345677888999999998876321 234689999999998873222 233568999999999998 5678888877
Q ss_pred cCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccc-cCC-Ccc
Q 005711 322 EKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIV-GCF-QLL 399 (681)
Q Consensus 322 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~~~-~L~ 399 (681)
+|+.++..+|+++ .+|..+....+|+.|...+|.+. .+|...+++++|++|||..|++. ..|+.+. ... .+.
T Consensus 265 ---nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~ 338 (1081)
T KOG0618|consen 265 ---NLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLN 338 (1081)
T ss_pred ---cceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHH
Confidence 8999999999996 78888888999999999999987 56777888999999999999987 4555433 222 266
Q ss_pred eeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCc
Q 005711 400 ALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNK 479 (681)
Q Consensus 400 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 479 (681)
.+..+.|.+.......-..++.|+.|++.+|.+++..-..+.+.++|+.|+|++|++.......+.++..|+.|+|++|+
T Consensus 339 ~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk 418 (1081)
T KOG0618|consen 339 TLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK 418 (1081)
T ss_pred HHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccch
Confidence 67777777764443333456789999999999998877788899999999999999985555667889999999999999
Q ss_pred CcccCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccC-CCcCCCCCC
Q 005711 480 LSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQV-PGLYRLRSL 558 (681)
Q Consensus 480 l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~i-p~~~~l~~L 558 (681)
++ .+|..+..+..|++|...+|++. ..| ++.++++|+.+|+|.|+++... |....-++|
T Consensus 419 L~-~Lp~tva~~~~L~tL~ahsN~l~------------------~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~L 478 (1081)
T KOG0618|consen 419 LT-TLPDTVANLGRLHTLRAHSNQLL------------------SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNL 478 (1081)
T ss_pred hh-hhhHHHHhhhhhHHHhhcCCcee------------------ech-hhhhcCcceEEecccchhhhhhhhhhCCCccc
Confidence 98 78899999999999988888775 566 7888999999999999987543 332223889
Q ss_pred CEEECCCCcCcccCCccccCCCCCCeEecccC
Q 005711 559 RALDLSHNSLTGQIPGNISSLQELTLLNLSYN 590 (681)
Q Consensus 559 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 590 (681)
++||+++|.-...--..|..+..+...++.-|
T Consensus 479 kyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 479 KYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred ceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 99999999854444556667777777777776
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=3.2e-34 Score=291.50 Aligned_cols=366 Identities=25% Similarity=0.353 Sum_probs=282.4
Q ss_pred CcEEEEEcCCCCCcc-cccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEee
Q 005711 82 GHVVSINLTDTSLSG-QVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELI 160 (681)
Q Consensus 82 ~~v~~L~L~~~~l~g-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 160 (681)
.-|+.+|+++|.++| ..|.+...+++++-|.|....+. .+|+.++.|.+|++|.+++|++. .+-..+..++.||.++
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVI 84 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHh
Confidence 358889999999985 57888889999999999888776 57888999999999999999987 4556788899999999
Q ss_pred CCCCCCCCccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccc
Q 005711 161 LKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGT 240 (681)
Q Consensus 161 L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~ 240 (681)
+..|++-..-+|..+..+ ..|..||||+|++. ..|..+.+-+++..|+|++|++..++.
T Consensus 85 ~R~N~LKnsGiP~diF~l-~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn------------------- 143 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRL-KDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPN------------------- 143 (1255)
T ss_pred hhccccccCCCCchhccc-ccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCc-------------------
Confidence 999888778888888888 88999999999988 788888888888888888887764332
Q ss_pred cchhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCcc-CCCChhhhh
Q 005711 241 LPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLS-GPLPSKIAQ 319 (681)
Q Consensus 241 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~p~~~~~ 319 (681)
..+.+++.|-.|||++|++. ..|..+..+..|+.|+|++|.+.......+-.+++|+.|.+++.+-+ ..+|.++..
T Consensus 144 --~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~ 220 (1255)
T KOG0444|consen 144 --SLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDD 220 (1255)
T ss_pred --hHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhh
Confidence 23445566666666666665 45556666667777777776665444444555666666666665422 346666666
Q ss_pred cccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcc
Q 005711 320 TTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLL 399 (681)
Q Consensus 320 ~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~ 399 (681)
+. +|..+|+|.|.+. ..|+.+-++++|+.|+|++|+++ .+....+.-.+|++|++|.|+++ .+|.+++.+++|+
T Consensus 221 l~---NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~ 294 (1255)
T KOG0444|consen 221 LH---NLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLT 294 (1255)
T ss_pred hh---hhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHH
Confidence 66 7777888888877 67777777888888888888876 33344455567788888888887 6788888888888
Q ss_pred eeecccccccc-cCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCC
Q 005711 400 ALIVNNNNLSG-EIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARN 478 (681)
Q Consensus 400 ~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 478 (681)
.|...+|+++- -+|..++++.+|+.+..++|.+. .+|..++.|.+|+.|.|+.|++. ++|+++.-++.|+.||+++|
T Consensus 295 kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 295 KLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLREN 372 (1255)
T ss_pred HHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCC
Confidence 88888887764 36778888888998888888887 78888999999999999999887 78888888899999999888
Q ss_pred cCc
Q 005711 479 KLS 481 (681)
Q Consensus 479 ~l~ 481 (681)
.-.
T Consensus 373 pnL 375 (1255)
T KOG0444|consen 373 PNL 375 (1255)
T ss_pred cCc
Confidence 654
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=9.4e-34 Score=288.11 Aligned_cols=342 Identities=26% Similarity=0.356 Sum_probs=190.2
Q ss_pred CCCCCEEEccCCCCC-CcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCcCccccCccccCCCCCC
Q 005711 129 LSGLKTLDLSYNKFV-GVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLK 207 (681)
Q Consensus 129 l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 207 (681)
++-.+-.|+++|.++ +.+|.....++.++.|.|...++ ..+|..++.+ .+|++|.+++|++. .+...+..++.|+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L--~~vPeEL~~l-qkLEHLs~~HN~L~-~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKL--EQVPEELSRL-QKLEHLSMAHNQLI-SVHGELSDLPRLR 81 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhh--hhChHHHHHH-hhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence 344455566666665 34555555555555555544422 3445555555 45555555555544 3333444455555
Q ss_pred EEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCcccc
Q 005711 208 HLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNY 287 (681)
Q Consensus 208 ~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 287 (681)
.+++..|++.. .-+|..+..+..|+.|||++|++. ..|..+..-+++-.|+|++|++.
T Consensus 82 sv~~R~N~LKn--------------------sGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie- 139 (1255)
T KOG0444|consen 82 SVIVRDNNLKN--------------------SGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE- 139 (1255)
T ss_pred HHhhhcccccc--------------------CCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-
Confidence 55555544431 135666777777777777777776 56777777777777777777776
Q ss_pred ccCc-cccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccc-cccc
Q 005711 288 EISP-RLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLI-GEIP 365 (681)
Q Consensus 288 ~~~~-~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~~ 365 (681)
.+|. -+.+++.|-.|||++|.+. .+|+.+..+. .|+.|+|++|.+...--..+..+++|+.|++++.+-+ ..+|
T Consensus 140 tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~---~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~P 215 (1255)
T KOG0444|consen 140 TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLS---MLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIP 215 (1255)
T ss_pred cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHh---hhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCC
Confidence 3443 3456677777777777776 4555555555 6777777777665433334445566666666665432 2456
Q ss_pred cccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCC
Q 005711 366 ARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKS 445 (681)
Q Consensus 366 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 445 (681)
..+..+.+|..+|+|.|.+. .+|+++..+++|+.|++++|.++.. ....+.-.+|++|++|.|+++ .+|+.+..+++
T Consensus 216 tsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~k 292 (1255)
T KOG0444|consen 216 TSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQLT-VLPDAVCKLTK 292 (1255)
T ss_pred CchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeee-eccHHHHhhhhhhccccchhc-cchHHHhhhHH
Confidence 66666666777777766665 5566665555555555555555422 112223344555555555555 44555555555
Q ss_pred CcEEECCCCcCC-CcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCcc
Q 005711 446 LEIVDFSSNNLS-GSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKF 504 (681)
Q Consensus 446 L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~ 504 (681)
|+.|.+.+|+++ .-+|..++.+.+|+++..++|.+. ..|+.++.+..|+.|.|+.|++
T Consensus 293 L~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrL 351 (1255)
T KOG0444|consen 293 LTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRL 351 (1255)
T ss_pred HHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccce
Confidence 555555555544 224444555555555555544443 3444444444444444444433
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=4e-23 Score=245.90 Aligned_cols=340 Identities=21% Similarity=0.226 Sum_probs=174.9
Q ss_pred cccccCCCCCCEEEccCCC------CCCcCCccccCCC-CCCEeeCCCCCCCCccCCchhccccCCccEEEccCCcCccc
Q 005711 123 STCFGGLSGLKTLDLSYNK------FVGVVPDAIMKLR-NLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGE 195 (681)
Q Consensus 123 ~~~~~~l~~L~~L~Ls~n~------l~~~~p~~~~~l~-~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~ 195 (681)
+.+|.++++|+.|.+..+. +...+|..|..++ +|+.|++.+++. ..+|..+. . .+|++|++.+|.+. .
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l--~~lP~~f~-~-~~L~~L~L~~s~l~-~ 625 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL--RCMPSNFR-P-ENLVKLQMQGSKLE-K 625 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC--CCCCCcCC-c-cCCcEEECcCcccc-c
Confidence 3456667777777765443 2234555555553 467777766643 44555542 3 56777777777665 4
Q ss_pred cCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcc
Q 005711 196 IPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQAL 275 (681)
Q Consensus 196 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L 275 (681)
+|..+..+++|+.|+++++.....+|. +..+++|+.|++++|.....+|..+..+++|
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip~----------------------ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L 683 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIPD----------------------LSMATNLETLKLSDCSSLVELPSSIQYLNKL 683 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCCc----------------------cccCCcccEEEecCCCCccccchhhhccCCC
Confidence 566666667777777766543333322 3334444445554444434444444445555
Q ss_pred cEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEec
Q 005711 276 THLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFL 355 (681)
Q Consensus 276 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 355 (681)
+.|++++|..-..+|..+ ++++|+.|++++|...+.+|... .+|+.|++++|.+. .+|..+ .+++|++|++
T Consensus 684 ~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~------~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l 754 (1153)
T PLN03210 684 EDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDIS------TNISWLDLDETAIE-EFPSNL-RLENLDELIL 754 (1153)
T ss_pred CEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccccc------CCcCeeecCCCccc-cccccc-cccccccccc
Confidence 555555443333334332 34455555555544333333211 14555555555544 334332 3445555555
Q ss_pred cCCccc-------cccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcc
Q 005711 356 SNNLLI-------GEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDIS 428 (681)
Q Consensus 356 ~~n~l~-------~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 428 (681)
.++... ...+......++|+.|++++|...+.+|..+..+++|+.|++++|...+.+|... .+++|+.|+++
T Consensus 755 ~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls 833 (1153)
T PLN03210 755 CEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLS 833 (1153)
T ss_pred cccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECC
Confidence 442211 0111111223455566666655555555555556666666665554444455443 45566666666
Q ss_pred cCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCc
Q 005711 429 NNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNK 503 (681)
Q Consensus 429 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~ 503 (681)
+|.....+|.. .++|+.|++++|.+. .+|.++..+++|++|++++|.--..+|..+..+++|+.+++++|.
T Consensus 834 ~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 834 GCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 65444344432 245666666666665 455566666666666666643333455555666666666666653
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=4.6e-23 Score=245.45 Aligned_cols=316 Identities=21% Similarity=0.249 Sum_probs=188.1
Q ss_pred CccccCCCCCCEeeCCCCCC-----CCccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCccccc
Q 005711 147 PDAIMKLRNLRELILKGNPE-----LGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVH 221 (681)
Q Consensus 147 p~~~~~l~~L~~L~L~~n~~-----~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~ 221 (681)
+.+|.++++|++|.+..+.. ....+|..+..++.+|+.|++.++.+. .+|..+ ...+|++|++
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L---------- 618 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQM---------- 618 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEEC----------
Confidence 44577777788777765421 112344444444344555555555544 444443 2344444444
Q ss_pred CcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcE
Q 005711 222 DFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLL 301 (681)
Q Consensus 222 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 301 (681)
.+|.+. .++..+..+++|+.|+++++...+.+|. ++.+++|+.|++++|.....+|..+..+++|+.
T Consensus 619 -----------~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~ 685 (1153)
T PLN03210 619 -----------QGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLED 685 (1153)
T ss_pred -----------cCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCE
Confidence 444443 4566667788899999988765556664 778889999999988776788888888999999
Q ss_pred EeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccC
Q 005711 302 LDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSH 381 (681)
Q Consensus 302 L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 381 (681)
|++++|...+.+|..+ .+ ++|+.|++++|...+.+|.. .++|++|++++|.+. .+|..+ .+++|+.|++.+
T Consensus 686 L~L~~c~~L~~Lp~~i-~l---~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~ 756 (1153)
T PLN03210 686 LDMSRCENLEILPTGI-NL---KSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCE 756 (1153)
T ss_pred EeCCCCCCcCccCCcC-CC---CCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccc
Confidence 9998876656777654 33 37888888888766566643 357888888888875 456544 567788887776
Q ss_pred CcCcc-------ccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCC
Q 005711 382 NMLSG-------SIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSN 454 (681)
Q Consensus 382 n~l~~-------~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 454 (681)
+.... ..+......++|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ ++++|+.|++++|
T Consensus 757 ~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c 835 (1153)
T PLN03210 757 MKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGC 835 (1153)
T ss_pred cchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCC
Confidence 43211 111111223455555555555555555555555555555555554333444433 4555555555555
Q ss_pred cCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeeccc
Q 005711 455 NLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFST 501 (681)
Q Consensus 455 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~ 501 (681)
.....+|.. .++|++|++++|.++ .+|.++..+++|+.|++++
T Consensus 836 ~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~ 878 (1153)
T PLN03210 836 SRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNG 878 (1153)
T ss_pred Ccccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCC
Confidence 433333321 234555555555554 3455555555555555544
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=5.3e-24 Score=207.14 Aligned_cols=356 Identities=22% Similarity=0.247 Sum_probs=230.1
Q ss_pred CcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCC-CccccccCccccCCCCCcEEe
Q 005711 225 QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSH-NHLNYEISPRLVFFEKLLLLD 303 (681)
Q Consensus 225 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~ 303 (681)
+.-..++|..|+++...+.+|..+++|+.|||+.|+++.+-|+.|.+++++..|.+.+ |.++......|..+..++.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 3466777777777766677778888888888888888877788888887777766655 777755555677778888888
Q ss_pred ccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcc-cccCCCCCCEEeccCCccc------------cccccccCC
Q 005711 304 LSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPL-KITELKSLQALFLSNNLLI------------GEIPARIGN 370 (681)
Q Consensus 304 L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~------------~~~~~~l~~ 370 (681)
+.-|++.-...+.+..+. ++..|.+.+|.+. .++. .+..+.+++.+++..|.+. ...|..++.
T Consensus 147 lNan~i~Cir~~al~dL~---~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsg 222 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLP---SLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSG 222 (498)
T ss_pred cChhhhcchhHHHHHHhh---hcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccc
Confidence 877777765555666665 6777777788777 3443 6677777777777777631 111111121
Q ss_pred CCCCCEEEc-------------------------cCCcCccccC-cccccCCCcceeecccccccccCccccCCCCCccE
Q 005711 371 LTYLQVIDL-------------------------SHNMLSGSIP-LNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKI 424 (681)
Q Consensus 371 l~~L~~L~L-------------------------s~n~l~~~~p-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 424 (681)
.....-..+ +.+...+.-| .+|..+++|+++++++|++++.-+.+|.+...++.
T Consensus 223 arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~e 302 (498)
T KOG4237|consen 223 ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQE 302 (498)
T ss_pred ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhh
Confidence 111111111 1122222223 34667777888888888888777777777788888
Q ss_pred EEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccC-----Ccc-----------c
Q 005711 425 LDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNL-----PNW-----------L 488 (681)
Q Consensus 425 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-----p~~-----------~ 488 (681)
|.|..|++...-...|.++..|++|+|.+|+|+...|.+|..+.+|.+|.+-.|.+...- -+| .
T Consensus 303 L~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~C 382 (498)
T KOG4237|consen 303 LYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRC 382 (498)
T ss_pred hhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCC
Confidence 888888777655667777778888888888887777777777777888877777653210 011 1
Q ss_pred ccCCccceeecccCcccc---CCCCC-----------------cccccCCccccccCCcccccccccceeecCCCcCccc
Q 005711 489 FSFQAIQMMDFSTNKFMG---FIPDA-----------------VGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQ 548 (681)
Q Consensus 489 ~~l~~L~~L~ls~n~~~~---~~p~~-----------------~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ 548 (681)
.....++.+++++..+.. .-|.. ++.-.|+..+. .+|..+- ..-.+|++.+|.++ .
T Consensus 383 q~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~ 458 (498)
T KOG4237|consen 383 QSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-S 458 (498)
T ss_pred CCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-c
Confidence 112234444444443211 11110 23445555554 5555432 25678889999888 5
Q ss_pred CCCcCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccC
Q 005711 549 VPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYN 590 (681)
Q Consensus 549 ip~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 590 (681)
+|.- .+.+| .+|+++|+++...-..|.+++.|.+|-++||
T Consensus 459 vp~~-~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 459 VPDE-LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred cCHH-HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 5652 45677 8899999998777778889999999988887
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=5.7e-21 Score=211.25 Aligned_cols=262 Identities=26% Similarity=0.283 Sum_probs=183.9
Q ss_pred cccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEE
Q 005711 274 ALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQAL 353 (681)
Q Consensus 274 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 353 (681)
.-..|+++++.++ .+|..+. ++|+.|++.+|+++ .+|.. .++|++|++++|+++ .+|.. .++|+.|
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l------p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L 267 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL------PPELRTLEVSGNQLT-SLPVL---PPGLLEL 267 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC------CCCCcEEEecCCccC-cccCc---cccccee
Confidence 4567889999887 6777664 47888999999887 45542 137889999999888 45542 3678888
Q ss_pred eccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcce
Q 005711 354 FLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQIS 433 (681)
Q Consensus 354 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 433 (681)
++++|.++. +|.. .++|+.|++++|+++ .+|.. .++|+.|++++|++.+ +|.. ..+|+.|++++|.++
T Consensus 268 ~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~ 335 (788)
T PRK15387 268 SIFSNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT 335 (788)
T ss_pred eccCCchhh-hhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCC---cccccccccccCccc
Confidence 888888763 4432 256788888888887 35542 3578888888888775 3322 235777788888877
Q ss_pred eccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccCCCCCcc
Q 005711 434 GEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVG 513 (681)
Q Consensus 434 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~ 513 (681)
+ +|.. ..+|++|++++|++++ +|.. .++|+.|++++|++. .+|.. ..+|+.|++++|+++
T Consensus 336 ~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt-------- 395 (788)
T PRK15387 336 S-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-------- 395 (788)
T ss_pred c-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCccc--------
Confidence 3 4532 2467888888888874 4432 246777788888777 35543 234566666665554
Q ss_pred cccCCccccccCCcccccccccceeecCCCcCcccCCCcCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcce
Q 005711 514 MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFS 593 (681)
Q Consensus 514 L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 593 (681)
.+|.. .++|+.|++++|++++ +|.+ ..+|+.|++++|+++ .+|..+..++.|+.|++++|+|+
T Consensus 396 ----------~LP~l---~s~L~~LdLS~N~Lss-IP~l--~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 396 ----------SLPVL---PSELKELMVSGNRLTS-LPML--PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred ----------CCCCc---ccCCCEEEccCCcCCC-CCcc--hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCC
Confidence 34432 2578888999998884 6652 346788899999988 78888888889999999999998
Q ss_pred eeCCC
Q 005711 594 GFVPW 598 (681)
Q Consensus 594 ~~~p~ 598 (681)
|.+|.
T Consensus 459 ~~~~~ 463 (788)
T PRK15387 459 ERTLQ 463 (788)
T ss_pred chHHH
Confidence 87664
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=1.2e-20 Score=208.68 Aligned_cols=225 Identities=26% Similarity=0.335 Sum_probs=128.1
Q ss_pred CCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCE
Q 005711 297 EKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQV 376 (681)
Q Consensus 297 ~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 376 (681)
++|++|++++|+++ .+|... ++|+.|++++|.++ .+|.. .++|+.|++++|+++. +|. ..++|+.
T Consensus 242 ~~Lk~LdLs~N~Lt-sLP~lp------~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~ 306 (788)
T PRK15387 242 PELRTLEVSGNQLT-SLPVLP------PGLLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQE 306 (788)
T ss_pred CCCcEEEecCCccC-cccCcc------cccceeeccCCchh-hhhhc---hhhcCEEECcCCcccc-ccc---cccccce
Confidence 44555555555554 233211 14555555555554 23321 1345555555555542 332 1245566
Q ss_pred EEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcC
Q 005711 377 IDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNL 456 (681)
Q Consensus 377 L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 456 (681)
|++++|.+++ +|.. ..+|+.|.+++|.+++ +|. ...+|+.|++++|++++ +|.. ..+|+.|++++|++
T Consensus 307 LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~---lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L 374 (788)
T PRK15387 307 LSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPT---LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRL 374 (788)
T ss_pred eECCCCcccc-CCCC---cccccccccccCcccc-ccc---cccccceEecCCCccCC-CCCC---Ccccceehhhcccc
Confidence 6666665553 3321 1245555666666553 332 11467778888877773 4432 34667778888877
Q ss_pred CCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccc
Q 005711 457 SGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLE 536 (681)
Q Consensus 457 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~ 536 (681)
++ +|.. .++|+.|++++|++++ +|.. .++|+.|++++|+++ .+|.. ..+|+
T Consensus 375 ~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls------------------sIP~l---~~~L~ 425 (788)
T PRK15387 375 TS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT------------------SLPML---PSGLL 425 (788)
T ss_pred cc-Cccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC------------------CCCcc---hhhhh
Confidence 73 5543 2467888888888874 5532 245666666666654 34432 23567
Q ss_pred eeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccC
Q 005711 537 YLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISS 578 (681)
Q Consensus 537 ~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 578 (681)
.|++++|+++ .+|. +.++++|+.|+|++|.+++.+|..+..
T Consensus 426 ~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 426 SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred hhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 7788888877 5666 777788888888888888777766533
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.85 E-value=4.1e-23 Score=200.97 Aligned_cols=379 Identities=21% Similarity=0.212 Sum_probs=213.9
Q ss_pred CccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcc----cEEECCCCCCccccchhhccCCCCCEEEc
Q 005711 181 NLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSL----LVLNLGSNRFSGTLPCFAASAMSLTVLKL 256 (681)
Q Consensus 181 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L----~~L~L~~n~l~~~~~~~~~~~~~L~~L~L 256 (681)
.-..++|..|+++...|.+|+.+++|+.|||++|.|+.+.|+.|..| +.+..++|+++......|+.+..++.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 34455555566554444556666666666666666666555555442 22233346665444455666666666666
Q ss_pred cCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccC------------CCChhhhhcccCC
Q 005711 257 DNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSG------------PLPSKIAQTTEKA 324 (681)
Q Consensus 257 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~------------~~p~~~~~~~~~~ 324 (681)
.-|++.-...+.+..++++..|.+.+|.+...--..+..+..++.+.+..|.+.. ..|..++...
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar--- 224 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR--- 224 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce---
Confidence 6666665555666666666666666666653333355566666666666554211 1111111111
Q ss_pred CccEEEccCCCCcCCCcccccC-CCCCCEEeccCCccccccc-cccCCCCCCCEEEccCCcCccccCcccccCCCcceee
Q 005711 325 GLVLLDLSHNRFSGEIPLKITE-LKSLQALFLSNNLLIGEIP-ARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALI 402 (681)
Q Consensus 325 ~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ 402 (681)
...-..+.+.++...-+..|.. +..+..=..+.+...++.| ..|..+++|+.|++++|++++.-+.+|.+...+++|.
T Consensus 225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~ 304 (498)
T KOG4237|consen 225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY 304 (498)
T ss_pred ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence 1111222222222111111111 1111111112222222322 3466777777777777777777777777777777777
Q ss_pred cccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCc-----chhhhh-----------c
Q 005711 403 VNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGS-----LNDAIT-----------K 466 (681)
Q Consensus 403 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~-----------~ 466 (681)
+..|++...-...|.++..|+.|+|.+|+++-..|..|..+.+|.+|.+-.|.+.-. +-+|+. .
T Consensus 305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~ 384 (498)
T KOG4237|consen 305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQS 384 (498)
T ss_pred cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCC
Confidence 777777666666677777888888888888777777777777788887777765311 111211 1
Q ss_pred CCCCCEEEccCCcCcc---cCCcccc---------cCCcccee-ecccCcccc---CCCC-CcccccCCccccccCCccc
Q 005711 467 WTNLKYFSIARNKLSG---NLPNWLF---------SFQAIQMM-DFSTNKFMG---FIPD-AVGMDLSDNLLHGTIPKGL 529 (681)
Q Consensus 467 l~~L~~L~L~~n~l~~---~~p~~~~---------~l~~L~~L-~ls~n~~~~---~~p~-~~~L~Ls~N~l~g~ip~~l 529 (681)
-..++.+.+++..+.. ..|+..+ .++-+... ..|+..+.. -+|. ...+.+.+|.++ .+|.+
T Consensus 385 p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~-~vp~~- 462 (498)
T KOG4237|consen 385 PGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIPVDVTELYLDGNAIT-SVPDE- 462 (498)
T ss_pred CchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCCchhHHHhcccchhc-ccCHH-
Confidence 1245566666654431 1222111 22333322 233333221 1332 247999999999 88988
Q ss_pred ccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCC
Q 005711 530 FQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHN 566 (681)
Q Consensus 530 ~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N 566 (681)
.+.+| .+|+|+|+++..--. |.++++|.+|-|++|
T Consensus 463 -~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 463 -LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred -HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 78889 999999999855444 889999999999987
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.83 E-value=6.2e-20 Score=204.51 Aligned_cols=247 Identities=21% Similarity=0.291 Sum_probs=125.3
Q ss_pred cCCHHhHHHHHHHHhcCCCCCCCCC----CC-CCCCCCCCCc----------------eeecCCCCcEEEEEcCCCCCcc
Q 005711 38 ELNLEDKASLLLFKSLVQDPTQKLS----SW-VGSNCTNWTG----------------VACNFQTGHVVSINLTDTSLSG 96 (681)
Q Consensus 38 ~~~~~~~~~l~~~~~~~~~~~~~~~----~w-~~~~cc~w~g----------------v~c~~~~~~v~~L~L~~~~l~g 96 (681)
....++.+.+.+....+..|. ... .| .+.+.|.-+. |.| ..+.|+.+...+.....
T Consensus 59 ~~~~~~~~~~~~~~~~l~~p~-~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~--~~~~vt~l~~~g~~~~~ 135 (754)
T PRK15370 59 TASPEEIKSKFECLRMLAFPA-YADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEG--GGKSVTYTRVTESEQAS 135 (754)
T ss_pred CCCHHHHHHHHHHHHHhcCCc-hhhccccccCCCCcccccCCcchhhheeeecCCceEEec--CCCcccccccccccccc
Confidence 345667778888888887762 333 48 4557776443 556 35667777765532211
Q ss_pred cccc----------------------------c---c--cCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCC
Q 005711 97 QVHP----------------------------R---L--CKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFV 143 (681)
Q Consensus 97 ~~~~----------------------------~---l--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 143 (681)
.... . + +-..+...|+++++.++. +|..+. +.|+.|+|++|+++
T Consensus 136 ~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lt 212 (754)
T PRK15370 136 SASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLTT-IPACIP--EQITTLILDNNELK 212 (754)
T ss_pred cCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCC
Confidence 1000 0 0 111345667776666663 444332 35677777777666
Q ss_pred CcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCc
Q 005711 144 GVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDF 223 (681)
Q Consensus 144 ~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~ 223 (681)
.+|..+. ++|++|++++|++ . .+|..+. .+|++|++++|.+. .+|..+. .+|+.|++++|+++......
T Consensus 213 -sLP~~l~--~nL~~L~Ls~N~L-t-sLP~~l~---~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~l 281 (754)
T PRK15370 213 -SLPENLQ--GNIKTLYANSNQL-T-SIPATLP---DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISCLPENL 281 (754)
T ss_pred -cCChhhc--cCCCEEECCCCcc-c-cCChhhh---ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCcccccc
Confidence 4455443 4666777766633 2 3454332 35666666666665 4555443 35666666666665432222
Q ss_pred CCcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEe
Q 005711 224 YQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLD 303 (681)
Q Consensus 224 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 303 (681)
..+|+.|++++|++++ +|..+. ++|+.|++++|.++. +|..+ .++|+.|++++|.+++ +|..+ .++|+.|+
T Consensus 282 ~~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~ 352 (754)
T PRK15370 282 PEELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASL--PPELQVLD 352 (754)
T ss_pred CCCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhh--cCcccEEE
Confidence 2345555555555542 232221 234445555554442 23222 1344444444444442 33222 13444444
Q ss_pred ccCCCcc
Q 005711 304 LSFNDLS 310 (681)
Q Consensus 304 L~~n~l~ 310 (681)
+++|+++
T Consensus 353 Ls~N~L~ 359 (754)
T PRK15370 353 VSKNQIT 359 (754)
T ss_pred CCCCCCC
Confidence 4444443
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=3.9e-19 Score=198.21 Aligned_cols=245 Identities=23% Similarity=0.374 Sum_probs=129.9
Q ss_pred ccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCcc
Q 005711 182 LEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSV 261 (681)
Q Consensus 182 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 261 (681)
...|+++++.++ .+|..+. +.|+.|++++|.++......+.+|++|++++|+++ .+|..+. .+|+.|++++|.+
T Consensus 180 ~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L 253 (754)
T PRK15370 180 KTELRLKILGLT-TIPACIP--EQITTLILDNNELKSLPENLQGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRI 253 (754)
T ss_pred ceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCcCChhhccCCCEEECCCCccc-cCChhhh--ccccEEECcCCcc
Confidence 445555555555 3444332 34555555555555443333444555555555554 3343332 2466666666665
Q ss_pred ccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCc
Q 005711 262 VGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIP 341 (681)
Q Consensus 262 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p 341 (681)
. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|.++. +|
T Consensus 254 ~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp-----~sL~~L~Ls~N~Lt~-LP 320 (754)
T PRK15370 254 T-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP-----SGITHLNVQSNSLTA-LP 320 (754)
T ss_pred C-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch-----hhHHHHHhcCCcccc-CC
Confidence 5 4454442 35666666666665 3444332 356666666666652 443322 146666666666663 44
Q ss_pred ccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCC
Q 005711 342 LKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDS 421 (681)
Q Consensus 342 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 421 (681)
..+. ++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|.++. +|..+. .+
T Consensus 321 ~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--~s 389 (754)
T PRK15370 321 ETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP--AA 389 (754)
T ss_pred cccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH--HH
Confidence 3332 466666666666653 444332 46666666666665 3454332 456666666666553 333332 24
Q ss_pred ccEEEcccCcceecccc----ccCCCCCCcEEECCCCcCC
Q 005711 422 LKILDISNNQISGEIPL----TLAGLKSLEIVDFSSNNLS 457 (681)
Q Consensus 422 L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~L~~n~l~ 457 (681)
|+.|++++|++. .+|. ....++.+..+++.+|.++
T Consensus 390 L~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 390 LQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 666666666665 3332 2333456666666666665
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=4.3e-19 Score=184.03 Aligned_cols=256 Identities=25% Similarity=0.288 Sum_probs=111.7
Q ss_pred EEcCCCCCcc-cccccccCCCCCCEEECCCCcCCcc----ccccccCCCCCCEEEccCCCCCC------cCCccccCCCC
Q 005711 87 INLTDTSLSG-QVHPRLCKLSFLEFLVLSSNAFTGR----ISTCFGGLSGLKTLDLSYNKFVG------VVPDAIMKLRN 155 (681)
Q Consensus 87 L~L~~~~l~g-~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~------~~p~~~~~l~~ 155 (681)
|+|.++.+++ .....+..++.|++|+++++.+++. ++..+...+.|++|+++++.+.+ .++..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 4555555542 2233344455566666666665432 44445555566666666665542 12233444455
Q ss_pred CCEeeCCCCCCCCccCCchhccccCC---ccEEEccCCcCcc----ccCccccCC-CCCCEEEccCccCcccccCcCCcc
Q 005711 156 LRELILKGNPELGGVFPGWVGNFSMN---LEKLDFSFNSFCG----EIPESLYYL-KSLKHLDLEKNNLTGNVHDFYQSL 227 (681)
Q Consensus 156 L~~L~L~~n~~~~~~~p~~l~~l~~~---L~~L~L~~n~l~~----~~p~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~L 227 (681)
|++|++++|. +.+..+..+..+ .+ |++|++++|.+.+ .+...+..+ ++|+.|++++|.+++...
T Consensus 83 L~~L~l~~~~-~~~~~~~~~~~l-~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~------ 154 (319)
T cd00116 83 LQELDLSDNA-LGPDGCGVLESL-LRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC------ 154 (319)
T ss_pred eeEEEccCCC-CChhHHHHHHHH-hccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH------
Confidence 5555555542 222222222222 12 4444444444431 111222233 334444444433331110
Q ss_pred cEEECCCCCCccccchhhccCCCCCEEEccCCccccC----CChhhcccCcccEEecCCCccccc----cCccccCCCCC
Q 005711 228 LVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGG----IPTCIASLQALTHLNLSHNHLNYE----ISPRLVFFEKL 299 (681)
Q Consensus 228 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L 299 (681)
..++..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++. +...+..+++|
T Consensus 155 -----------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L 223 (319)
T cd00116 155 -----------EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSL 223 (319)
T ss_pred -----------HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCC
Confidence 01233444555666666666665531 222233445666666666655422 22233445556
Q ss_pred cEEeccCCCccCCCChhhhhcc--cCCCccEEEccCCCCcC----CCcccccCCCCCCEEeccCCccc
Q 005711 300 LLLDLSFNDLSGPLPSKIAQTT--EKAGLVLLDLSHNRFSG----EIPLKITELKSLQALFLSNNLLI 361 (681)
Q Consensus 300 ~~L~L~~n~l~~~~p~~~~~~~--~~~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~ 361 (681)
+.|++++|.+++.....+.... ..+.|+.|++++|.+++ .+...+..+++|+++++++|.+.
T Consensus 224 ~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 224 EVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred CEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 6666666655432222221110 01245555555555441 11222333344555555555444
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=5.8e-19 Score=183.03 Aligned_cols=261 Identities=22% Similarity=0.280 Sum_probs=140.0
Q ss_pred hhhccCCCCCEEEccCCccccC----CChhhcccCcccEEecCCCcccc------ccCccccCCCCCcEEeccCCCccCC
Q 005711 243 CFAASAMSLTVLKLDNNSVVGG----IPTCIASLQALTHLNLSHNHLNY------EISPRLVFFEKLLLLDLSFNDLSGP 312 (681)
Q Consensus 243 ~~~~~~~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~------~~~~~l~~l~~L~~L~L~~n~l~~~ 312 (681)
..+..+..|++|+++++.++.. ++..+...+++++++++++.+.+ .++..+..+++|+.|++++|.+.+.
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 3344444556666665555321 23334444556666665555441 1223444566666666666666554
Q ss_pred CChhhhhcccCCCccEEEccCCCCcC----CCcccccCC-CCCCEEeccCCccccc----cccccCCCCCCCEEEccCCc
Q 005711 313 LPSKIAQTTEKAGLVLLDLSHNRFSG----EIPLKITEL-KSLQALFLSNNLLIGE----IPARIGNLTYLQVIDLSHNM 383 (681)
Q Consensus 313 ~p~~~~~~~~~~~L~~L~Ls~n~l~~----~~p~~l~~l-~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~ 383 (681)
.+..+..+...++|++|++++|++++ .+...+..+ ++|++|++++|.+++. ++..+..+++|++|++++|.
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG 176 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence 44444443321236666666666652 122233444 6667777777766532 23344555667777777776
Q ss_pred Cccc----cCcccccCCCcceeeccccccccc----CccccCCCCCccEEEcccCcceeccccccC-----CCCCCcEEE
Q 005711 384 LSGS----IPLNIVGCFQLLALIVNNNNLSGE----IQPELDALDSLKILDISNNQISGEIPLTLA-----GLKSLEIVD 450 (681)
Q Consensus 384 l~~~----~p~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-----~l~~L~~L~ 450 (681)
+++. ++..+...++|+.|++++|.+.+. +...+..+++|+.|++++|.+++.....+. ..+.|++|+
T Consensus 177 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~ 256 (319)
T cd00116 177 IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLS 256 (319)
T ss_pred CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEE
Confidence 6632 222333445666666666665432 223345566777777777776643222221 236777777
Q ss_pred CCCCcCCC----cchhhhhcCCCCCEEEccCCcCccc----CCcccccC-CccceeecccCc
Q 005711 451 FSSNNLSG----SLNDAITKWTNLKYFSIARNKLSGN----LPNWLFSF-QAIQMMDFSTNK 503 (681)
Q Consensus 451 L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l-~~L~~L~ls~n~ 503 (681)
+++|.++. .+...+..+++|+++++++|.+... +...+... ..++++++.+|.
T Consensus 257 l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 257 LSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred ccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 77777762 2334455567777777777777643 22222223 456666665553
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=1.7e-18 Score=150.01 Aligned_cols=168 Identities=29% Similarity=0.356 Sum_probs=99.9
Q ss_pred cccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccC
Q 005711 101 RLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSM 180 (681)
Q Consensus 101 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~ 180 (681)
.+.++++++.|.||+|.++ .+|..++.+.+|++|++++|+++ .+|.+++.+++|+.|+++-|
T Consensus 28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmn---------------- 89 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMN---------------- 89 (264)
T ss_pred cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchh----------------
Confidence 3556666777777777776 34455777777777777777776 56666666666666655544
Q ss_pred CccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCc
Q 005711 181 NLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNS 260 (681)
Q Consensus 181 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 260 (681)
.+. ..|..|+.++.|+.||+.+|++... .+|..|..++.|+.|++++|.
T Consensus 90 ----------rl~-~lprgfgs~p~levldltynnl~e~--------------------~lpgnff~m~tlralyl~dnd 138 (264)
T KOG0617|consen 90 ----------RLN-ILPRGFGSFPALEVLDLTYNNLNEN--------------------SLPGNFFYMTTLRALYLGDND 138 (264)
T ss_pred ----------hhh-cCccccCCCchhhhhhccccccccc--------------------cCCcchhHHHHHHHHHhcCCC
Confidence 443 5566666666677776666666532 334444445555555555555
Q ss_pred cccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhc
Q 005711 261 VVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQT 320 (681)
Q Consensus 261 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~ 320 (681)
+. .+|..++++++|+.|.+.+|.+- ..|..++.++.|++|.+.+|.++ .+|..++.+
T Consensus 139 fe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l 195 (264)
T KOG0617|consen 139 FE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANL 195 (264)
T ss_pred cc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhh
Confidence 54 45555555556666655555554 45555555556666666666555 444444443
No 22
>PLN03150 hypothetical protein; Provisional
Probab=99.65 E-value=1e-15 Score=170.39 Aligned_cols=151 Identities=32% Similarity=0.582 Sum_probs=126.6
Q ss_pred CCHHhHHHHHHHHhcCCCCCCCCCCCCCCCCC----CCCceeecCC--C--CcEEEEEcCCCCCcccccccccCCCCCCE
Q 005711 39 LNLEDKASLLLFKSLVQDPTQKLSSWVGSNCT----NWTGVACNFQ--T--GHVVSINLTDTSLSGQVHPRLCKLSFLEF 110 (681)
Q Consensus 39 ~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~cc----~w~gv~c~~~--~--~~v~~L~L~~~~l~g~~~~~l~~l~~L~~ 110 (681)
...+|.+||+.+|+.+.++.. .+|.++.|+ .|.||.|... . .+|+.|+|+++.+.|.+|..+.++++|++
T Consensus 369 t~~~~~~aL~~~k~~~~~~~~--~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~ 446 (623)
T PLN03150 369 TLLEEVSALQTLKSSLGLPLR--FGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQS 446 (623)
T ss_pred cCchHHHHHHHHHHhcCCccc--CCCCCCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCE
Confidence 345677799999999876532 489887774 7999999532 2 25999999999999999999999999999
Q ss_pred EECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCC
Q 005711 111 LVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFN 190 (681)
Q Consensus 111 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n 190 (681)
|+|++|.+.|.+|..++.+++|++|+|++|+++|.+|..++++++|++|+|++| .+.+.+|..++....++..+++.+|
T Consensus 447 L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N-~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN-SLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred EECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC-cccccCChHHhhccccCceEEecCC
Confidence 999999999999999999999999999999999999999999999999999998 5778888887664346677777777
Q ss_pred cC
Q 005711 191 SF 192 (681)
Q Consensus 191 ~l 192 (681)
..
T Consensus 526 ~~ 527 (623)
T PLN03150 526 AG 527 (623)
T ss_pred cc
Confidence 64
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=9.4e-18 Score=145.38 Aligned_cols=178 Identities=26% Similarity=0.466 Sum_probs=88.7
Q ss_pred CCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEc
Q 005711 396 FQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSI 475 (681)
Q Consensus 396 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 475 (681)
...+.|.+++|+++ .+|+.+..+.+|+.|++.+|+++ .+|..++.+++|+.|+++-|++. ..|..|+.++.|+.||+
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence 34444455555544 23334444455555555555554 34444455555555555544443 34444555555555555
Q ss_pred cCCcCcc-cCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cC
Q 005711 476 ARNKLSG-NLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LY 553 (681)
Q Consensus 476 ~~n~l~~-~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~ 553 (681)
.+|++.. .+|..++.++.|+.|.+++|.| . .+|..++++++|+.|.+..|.+. ..|. ++
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndf-----------------e-~lp~dvg~lt~lqil~lrdndll-~lpkeig 170 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDF-----------------E-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIG 170 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCc-----------------c-cCChhhhhhcceeEEeeccCchh-hCcHHHH
Confidence 5444432 2344444444444443333333 2 56666666666666666666665 3444 66
Q ss_pred CCCCCCEEECCCCcCcccCCccccCCCC---CCeEecccCcceeeC
Q 005711 554 RLRSLRALDLSHNSLTGQIPGNISSLQE---LTLLNLSYNSFSGFV 596 (681)
Q Consensus 554 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~---L~~L~ls~N~l~~~~ 596 (681)
.++.|+.|++.+|+++ .+|..++++.- =+++.+.+|++...|
T Consensus 171 ~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pI 215 (264)
T KOG0617|consen 171 DLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPI 215 (264)
T ss_pred HHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence 6666666666666666 44444444322 233445555554433
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.58 E-value=2.6e-15 Score=167.19 Aligned_cols=115 Identities=37% Similarity=0.555 Sum_probs=100.8
Q ss_pred CcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEeccc
Q 005711 511 AVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSY 589 (681)
Q Consensus 511 ~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 589 (681)
...|+|++|.++|.+|..+..+++|+.|+|++|.++|.+|. ++.+++|+.|||++|+++|.+|+.+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 35689999999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred CcceeeCCCCCC--CCCccc-cccCCCCCCCCCCCCCCC
Q 005711 590 NSFSGFVPWKQG--YQKFPG-AFAGNPNLCLESSHGECN 625 (681)
Q Consensus 590 N~l~~~~p~~~~--~~~~~~-~~~gn~~lc~~~~~~~c~ 625 (681)
|+++|.+|.... ...... .+.||+.+|+.|....|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999996422 112222 789999999877656674
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.23 E-value=2.6e-13 Score=139.10 Aligned_cols=172 Identities=29% Similarity=0.447 Sum_probs=96.0
Q ss_pred CCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEEC
Q 005711 372 TYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDF 451 (681)
Q Consensus 372 ~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 451 (681)
.--...|++.|++. .+|..+..+..|+.+.+..|.+. .+|..+..+..|+++|++.|+++ ..|..+..++ |+.|.+
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEE
Confidence 33456677777776 56666666666666666666554 44555566666666666666665 4455444443 555556
Q ss_pred CCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCccccc
Q 005711 452 SSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQ 531 (681)
Q Consensus 452 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~ 531 (681)
++|+++ .+|+.++..+.|..||.+.|.+. .+|..+..+.+|+.|.++.|++. .+|+++..
T Consensus 151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~------------------~lp~El~~ 210 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE------------------DLPEELCS 210 (722)
T ss_pred ecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh------------------hCCHHHhC
Confidence 666554 44555555555555555555554 44555555555554444444433 44455442
Q ss_pred ccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCc
Q 005711 532 LQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLT 569 (681)
Q Consensus 532 l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~ 569 (681)
| .|..||+|+|+++ .||. |.+|+.|++|-|.+|.+.
T Consensus 211 L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 211 L-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred C-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 2 3555555555555 4444 555555555555555555
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.16 E-value=4.5e-11 Score=127.58 Aligned_cols=152 Identities=35% Similarity=0.489 Sum_probs=79.8
Q ss_pred CccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecc
Q 005711 421 SLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFS 500 (681)
Q Consensus 421 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls 500 (681)
+|+.|++++|++. .+|..+..++.|+.|++++|+++ .+|......++|+.|++++|++. .+|..+.....|+.++++
T Consensus 141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS 217 (394)
T ss_pred hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhc
Confidence 5666666666555 33344555666666666666665 33433335556666666666665 455444444455555555
Q ss_pred cCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCCcCCCCCCCEEECCCCcCcccCCccccCCC
Q 005711 501 TNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQ 580 (681)
Q Consensus 501 ~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 580 (681)
+|... .++..+.++..+..+.+++|++...+-.++.++++++|++++|.++. ++. +..+.
T Consensus 218 ~N~~~------------------~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~ 277 (394)
T COG4886 218 NNSII------------------ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISS-ISS-LGSLT 277 (394)
T ss_pred CCcce------------------ecchhhhhcccccccccCCceeeeccchhccccccceeccccccccc-ccc-ccccC
Confidence 55321 34444555555555555555554221124555555555555555552 222 45555
Q ss_pred CCCeEecccCcceee
Q 005711 581 ELTLLNLSYNSFSGF 595 (681)
Q Consensus 581 ~L~~L~ls~N~l~~~ 595 (681)
+++.|++++|.+...
T Consensus 278 ~l~~L~~s~n~~~~~ 292 (394)
T COG4886 278 NLRELDLSGNSLSNA 292 (394)
T ss_pred ccCEEeccCcccccc
Confidence 555555555555443
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.11 E-value=2.6e-12 Score=131.80 Aligned_cols=170 Identities=28% Similarity=0.449 Sum_probs=95.2
Q ss_pred CEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEc
Q 005711 252 TVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDL 331 (681)
Q Consensus 252 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~L 331 (681)
...|++.|++. .+|..+..+..|+.+.+..|.+. .+|..+.++..|.+++++.|+++ ..|..++.++ |+.|-+
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp----Lkvli~ 150 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP----LKVLIV 150 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc----ceeEEE
Confidence 34455555554 45555555555555555555554 45555555666666666666655 4555555554 666666
Q ss_pred cCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeeccccccccc
Q 005711 332 SHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGE 411 (681)
Q Consensus 332 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~ 411 (681)
++|+++ .+|..++....|..|+.+.|.+. .+|..++++.+|+.|.+..|++. .+|..+. .-.|..|+++.|+++ .
T Consensus 151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~ 225 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-Y 225 (722)
T ss_pred ecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-e
Confidence 666665 45555555556666666666654 34455566666666666666655 3444444 334555555555554 4
Q ss_pred CccccCCCCCccEEEcccCcce
Q 005711 412 IQPELDALDSLKILDISNNQIS 433 (681)
Q Consensus 412 ~~~~~~~l~~L~~L~Ls~n~l~ 433 (681)
+|..|.+|..|++|-|.+|.+.
T Consensus 226 iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred cchhhhhhhhheeeeeccCCCC
Confidence 4555555555555555555554
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.10 E-value=1.1e-10 Score=124.49 Aligned_cols=200 Identities=36% Similarity=0.509 Sum_probs=114.1
Q ss_pred EEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCC-CCCEEEccCCcCccccCcccccCCCcceeecccc
Q 005711 328 LLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLT-YLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNN 406 (681)
Q Consensus 328 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n 406 (681)
.++++.+.+...+. .+...+.++.|++.+|.++ .++......+ +|+.|++++|.+. .+|.
T Consensus 97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~---------------- 157 (394)
T COG4886 97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPS---------------- 157 (394)
T ss_pred eeeccccccccCch-hhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhh----------------
Confidence 35555555532222 2333455666666666665 3444444443 6666666666655 2332
Q ss_pred cccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCc
Q 005711 407 NLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPN 486 (681)
Q Consensus 407 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~ 486 (681)
.+..++.|+.|++++|++. .+|...+..+.|+.|++++|+++ .+|........|+++.+++|... ..+.
T Consensus 158 --------~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~ 226 (394)
T COG4886 158 --------PLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLS 226 (394)
T ss_pred --------hhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecch
Confidence 3445566666666666665 33433335566666666666665 44444444445666666666432 3444
Q ss_pred ccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCCcCCCCCCCEEECCCC
Q 005711 487 WLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHN 566 (681)
Q Consensus 487 ~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~N 566 (681)
.+..+..+..+.+.+|++. .++..++.++++++|++++|.++ .++.++.+.+++.|++++|
T Consensus 227 ~~~~~~~l~~l~l~~n~~~------------------~~~~~~~~l~~l~~L~~s~n~i~-~i~~~~~~~~l~~L~~s~n 287 (394)
T COG4886 227 SLSNLKNLSGLELSNNKLE------------------DLPESIGNLSNLETLDLSNNQIS-SISSLGSLTNLRELDLSGN 287 (394)
T ss_pred hhhhcccccccccCCceee------------------eccchhccccccceecccccccc-ccccccccCccCEEeccCc
Confidence 4555555555555555443 33556666777777777777777 4444777777888888887
Q ss_pred cCcccCCccc
Q 005711 567 SLTGQIPGNI 576 (681)
Q Consensus 567 ~l~~~~p~~l 576 (681)
.++...|...
T Consensus 288 ~~~~~~~~~~ 297 (394)
T COG4886 288 SLSNALPLIA 297 (394)
T ss_pred cccccchhhh
Confidence 7776655543
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.04 E-value=4.7e-11 Score=113.26 Aligned_cols=64 Identities=34% Similarity=0.431 Sum_probs=36.7
Q ss_pred ccccceeecCCCcCcccCCCcCCCCCCCEEECCCCcCcccC-CccccCCCCCCeEecccCcceeeC
Q 005711 532 LQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQI-PGNISSLQELTLLNLSYNSFSGFV 596 (681)
Q Consensus 532 l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls~N~l~~~~ 596 (681)
+-+++.|.|++|.+. ....++.+-+|..||+++|++...- -..+++++.|+.+.+.+||+.+.+
T Consensus 351 LGNIKtL~La~N~iE-~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 351 LGNIKTLKLAQNKIE-TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hcCEeeeehhhhhHh-hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 445556666666554 3334555566666666666654221 124566677777777777776654
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.97 E-value=2.5e-10 Score=108.35 Aligned_cols=129 Identities=25% Similarity=0.350 Sum_probs=78.5
Q ss_pred CCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeec
Q 005711 420 DSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDF 499 (681)
Q Consensus 420 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 499 (681)
..|+.+||++|.++ .+..+..-.|+++.|++++|.+... ..+..+++|+.|||++|.++ .+..|-..+-+++.|.+
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 45566666666655 3444555556666666666665522 12555666666666666655 34444445555556665
Q ss_pred ccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCC--CcCCCCCCCEEECCCCcCccc
Q 005711 500 STNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVP--GLYRLRSLRALDLSHNSLTGQ 571 (681)
Q Consensus 500 s~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip--~~~~l~~L~~L~Ls~N~l~~~ 571 (681)
++|.+. --.+++.+-+|..||+++|++..... .+++++-|+.+.|.+|.+.+.
T Consensus 360 a~N~iE-------------------~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 360 AQNKIE-------------------TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhhHh-------------------hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 555442 12346667788888888888764433 278888888888888888843
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.97 E-value=7.1e-11 Score=114.83 Aligned_cols=67 Identities=21% Similarity=0.230 Sum_probs=30.5
Q ss_pred hhccCCCCCEEEccCCccccC----CChhhcccCcccEEecCCCccccc----cCccccCCCCCcEEeccCCCcc
Q 005711 244 FAASAMSLTVLKLDNNSVVGG----IPTCIASLQALTHLNLSHNHLNYE----ISPRLVFFEKLLLLDLSFNDLS 310 (681)
Q Consensus 244 ~~~~~~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~ 310 (681)
.+...+.|+.+.++.|.+... ....+..+++|+.|||.+|.++.. +...+..+++|+.+++++|.+.
T Consensus 180 ~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 180 AFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 344445555555555544311 112234455555555555555422 1222334445555555555544
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.96 E-value=9.9e-11 Score=113.84 Aligned_cols=42 Identities=24% Similarity=0.093 Sum_probs=19.2
Q ss_pred CCCCCcEEeccCCCccCCCChhhhh-cccCCCccEEEccCCCC
Q 005711 295 FFEKLLLLDLSFNDLSGPLPSKIAQ-TTEKAGLVLLDLSHNRF 336 (681)
Q Consensus 295 ~l~~L~~L~L~~n~l~~~~p~~~~~-~~~~~~L~~L~Ls~n~l 336 (681)
.+++|++++||+|.+....++.+.. +.++..|+.|+|.+|.+
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl 132 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGL 132 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCC
Confidence 3445555555555554333333322 12233455555555544
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=2.1e-10 Score=114.64 Aligned_cols=216 Identities=25% Similarity=0.243 Sum_probs=103.4
Q ss_pred ccCCCCCCEEEccCCCCCCcCC-ccccCCCCCCEeeCCCCCCCCccCC--chhccccCCccEEEccCCcCccccCccc-c
Q 005711 126 FGGLSGLKTLDLSYNKFVGVVP-DAIMKLRNLRELILKGNPELGGVFP--GWVGNFSMNLEKLDFSFNSFCGEIPESL-Y 201 (681)
Q Consensus 126 ~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~~~~~~~p--~~l~~l~~~L~~L~L~~n~l~~~~p~~l-~ 201 (681)
=+++++|+...|.+........ .....|++++.|||+.| ++....| .....+ ++|+.|+++.|.+.....+.. .
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqL-p~Le~LNls~Nrl~~~~~s~~~~ 194 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQL-PSLENLNLSSNRLSNFISSNTTL 194 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhc-ccchhcccccccccCCccccchh
Confidence 3466777777777766542111 24556777777777776 3332211 112333 566666666666542211111 1
Q ss_pred CCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcccEEecC
Q 005711 202 YLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLS 281 (681)
Q Consensus 202 ~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 281 (681)
.+++|+.|.++.|.++.. .+-.....+++|+.|+++.|............++.|+.|+|+
T Consensus 195 ~l~~lK~L~l~~CGls~k--------------------~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs 254 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWK--------------------DVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLS 254 (505)
T ss_pred hhhhhheEEeccCCCCHH--------------------HHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhcccc
Confidence 344555555555555411 011122334455555555553222222223334455555555
Q ss_pred CCcccccc-CccccCCCCCcEEeccCCCccCC-CCh--hhhhcccCCCccEEEccCCCCcCC-CcccccCCCCCCEEecc
Q 005711 282 HNHLNYEI-SPRLVFFEKLLLLDLSFNDLSGP-LPS--KIAQTTEKAGLVLLDLSHNRFSGE-IPLKITELKSLQALFLS 356 (681)
Q Consensus 282 ~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~-~p~--~~~~~~~~~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~ 356 (681)
+|++.... -...+.++.|+.|+++.+.+... +|+ .......+++|++|+++.|++... .-..+..+++|+.|.+.
T Consensus 255 ~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 255 NNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred CCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcc
Confidence 55543211 12334555555555555554421 111 112223344777788888777421 11233445677777777
Q ss_pred CCccccc
Q 005711 357 NNLLIGE 363 (681)
Q Consensus 357 ~n~l~~~ 363 (681)
.|.++.+
T Consensus 335 ~n~ln~e 341 (505)
T KOG3207|consen 335 LNYLNKE 341 (505)
T ss_pred ccccccc
Confidence 7777543
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=2.9e-10 Score=113.66 Aligned_cols=60 Identities=27% Similarity=0.214 Sum_probs=32.0
Q ss_pred CccEEEccCCCCcCCCc--ccccCCCCCCEEeccCCccccc--cccccCCCCCCCEEEccCCcCc
Q 005711 325 GLVLLDLSHNRFSGEIP--LKITELKSLQALFLSNNLLIGE--IPARIGNLTYLQVIDLSHNMLS 385 (681)
Q Consensus 325 ~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~Ls~n~l~ 385 (681)
+|+.+.|.+..+.. .+ .....+++++.|+|+.|-+... +......+++|+.|+++.|++.
T Consensus 122 kL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~ 185 (505)
T KOG3207|consen 122 KLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS 185 (505)
T ss_pred hhhheeecCccccc-cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc
Confidence 56666666665542 22 2334566666666666655432 1222345566666666666654
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.88 E-value=2.5e-09 Score=122.06 Aligned_cols=104 Identities=31% Similarity=0.356 Sum_probs=48.7
Q ss_pred CCCEEECCCCc--CCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccE
Q 005711 107 FLEFLVLSSNA--FTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEK 184 (681)
Q Consensus 107 ~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~ 184 (681)
.|++|-+..|. +....+..|..++.|++|||++|.=-+.+|..++.+-+||||++++..+ ..+|..++++ .+|.+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I--~~LP~~l~~L-k~L~~ 622 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI--SHLPSGLGNL-KKLIY 622 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc--cccchHHHHH-Hhhhe
Confidence 44555444443 2222233344455555555555443344555555555555555555422 2445555555 45555
Q ss_pred EEccCCcCccccCccccCCCCCCEEEccC
Q 005711 185 LDFSFNSFCGEIPESLYYLKSLKHLDLEK 213 (681)
Q Consensus 185 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 213 (681)
|++..+.-...+|.....+++|++|.+..
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred eccccccccccccchhhhcccccEEEeec
Confidence 55554443333333344455555555443
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.87 E-value=2e-09 Score=98.49 Aligned_cols=105 Identities=31% Similarity=0.355 Sum_probs=24.7
Q ss_pred cEEEEEcCCCCCccccccccc-CCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccc-cCCCCCCEee
Q 005711 83 HVVSINLTDTSLSGQVHPRLC-KLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAI-MKLRNLRELI 160 (681)
Q Consensus 83 ~v~~L~L~~~~l~g~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~ 160 (681)
+.++|+|+++.+... ..++ .+.+|+.|||++|.++.. . .+..+++|++|++++|+++. ++..+ ..+++|++|+
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEE
Confidence 345555555555421 2233 345555555555555532 1 24455555555555555552 22223 2355555555
Q ss_pred CCCCCCCCccCCchhccccCCccEEEccCCcCc
Q 005711 161 LKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFC 193 (681)
Q Consensus 161 L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~ 193 (681)
+++|++..-.--..+..+ ++|++|++.+|.++
T Consensus 95 L~~N~I~~l~~l~~L~~l-~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSL-PKLRVLSLEGNPVC 126 (175)
T ss_dssp -TTS---SCCCCGGGGG--TT--EEE-TT-GGG
T ss_pred CcCCcCCChHHhHHHHcC-CCcceeeccCCccc
Confidence 555533222222233334 44555555555444
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.81 E-value=3.3e-09 Score=97.02 Aligned_cols=54 Identities=31% Similarity=0.361 Sum_probs=17.7
Q ss_pred ccccceeecCCCcCccc--CCCcCCCCCCCEEECCCCcCcccCCc----cccCCCCCCeEe
Q 005711 532 LQGLEYLNLSFNFLDGQ--VPGLYRLRSLRALDLSHNSLTGQIPG----NISSLQELTLLN 586 (681)
Q Consensus 532 l~~L~~L~Ls~N~l~~~--ip~~~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~L~ 586 (681)
+++|++|++++|++... +-.+..+++|+.|++.+|.++.. +. .+..+++|+.||
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEET
T ss_pred CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeC
Confidence 44555555555554421 11144455555555555555422 21 134455666655
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.78 E-value=4.8e-09 Score=119.77 Aligned_cols=110 Identities=26% Similarity=0.292 Sum_probs=88.0
Q ss_pred cCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCC--CCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccC
Q 005711 103 CKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNK--FVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSM 180 (681)
Q Consensus 103 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~ 180 (681)
.+....+...+.+|.+.. ++.. ..+++|++|-+..|. +....+..|..++.|++|||++| .-.+.+|..++++ -
T Consensus 520 ~~~~~~rr~s~~~~~~~~-~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~-~~l~~LP~~I~~L-i 595 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIEH-IAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGN-SSLSKLPSSIGEL-V 595 (889)
T ss_pred cchhheeEEEEeccchhh-ccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCC-CccCcCChHHhhh-h
Confidence 334567888888887753 3332 245589999999996 55344455888999999999998 5668899999999 8
Q ss_pred CccEEEccCCcCccccCccccCCCCCCEEEccCccCc
Q 005711 181 NLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLT 217 (681)
Q Consensus 181 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 217 (681)
+||+|+++++.+. .+|..++++++|.+|++..+.-.
T Consensus 596 ~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l 631 (889)
T KOG4658|consen 596 HLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRL 631 (889)
T ss_pred hhhcccccCCCcc-ccchHHHHHHhhheecccccccc
Confidence 9999999999998 89999999999999999886644
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.77 E-value=1.6e-09 Score=115.88 Aligned_cols=238 Identities=29% Similarity=0.334 Sum_probs=125.0
Q ss_pred CccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecc
Q 005711 325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVN 404 (681)
Q Consensus 325 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~ 404 (681)
.++.+.+..|.+.. +-..+..+++|+.|++.+|++.... ..+..+++|++|++++|.++...+
T Consensus 73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~~--------------- 135 (414)
T KOG0531|consen 73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLEG--------------- 135 (414)
T ss_pred hHHhhccchhhhhh-hhcccccccceeeeeccccchhhcc-cchhhhhcchheeccccccccccc---------------
Confidence 45556666666653 2223455666667777777665432 124556666666666666654322
Q ss_pred cccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcch-hhhhcCCCCCEEEccCCcCccc
Q 005711 405 NNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLN-DAITKWTNLKYFSIARNKLSGN 483 (681)
Q Consensus 405 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~ 483 (681)
+..++.|+.|++++|.++.. ..+..++.|+.+++++|.+...-+ . ...+.+++.+.+.+|.+..
T Consensus 136 -----------l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~- 200 (414)
T KOG0531|consen 136 -----------LSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE- 200 (414)
T ss_pred -----------hhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc-
Confidence 22233355555555555421 223334555555555555542222 1 2444555555555555431
Q ss_pred CCcccccCCccceeecccCccccCCC--C-----CcccccCCccccccCCcccccccccceeecCCCcCcccCCCcCCCC
Q 005711 484 LPNWLFSFQAIQMMDFSTNKFMGFIP--D-----AVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLR 556 (681)
Q Consensus 484 ~p~~~~~l~~L~~L~ls~n~~~~~~p--~-----~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~ 556 (681)
...+..+..+..+++..|.++..-+ . ...+++++|.+. .++..+..+..+..|+++.|++. ....+....
T Consensus 201 -i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~-~~~~~~~~~ 277 (414)
T KOG0531|consen 201 -IEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS-NLEGLERLP 277 (414)
T ss_pred -ccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccc-ccccccccc
Confidence 1222233333333444444432111 0 234555555555 44466667778888888888776 333355566
Q ss_pred CCCEEECCCCcCccc---CCcc-ccCCCCCCeEecccCcceeeCC
Q 005711 557 SLRALDLSHNSLTGQ---IPGN-ISSLQELTLLNLSYNSFSGFVP 597 (681)
Q Consensus 557 ~L~~L~Ls~N~l~~~---~p~~-l~~l~~L~~L~ls~N~l~~~~p 597 (681)
.+..+....|.+... .... ......++.+.+.+|+.....+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 278 KLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred hHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 677777777776522 1111 3455777888888888766543
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.74 E-value=6.3e-09 Score=78.10 Aligned_cols=60 Identities=43% Similarity=0.504 Sum_probs=52.1
Q ss_pred CCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCC
Q 005711 106 SFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNP 165 (681)
Q Consensus 106 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 165 (681)
++|++|++++|+++...+..|.++++|++|++++|.++...|.+|.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 478899999999987777888999999999999999987778889999999999998884
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.72 E-value=8.3e-09 Score=77.44 Aligned_cols=60 Identities=42% Similarity=0.519 Sum_probs=49.4
Q ss_pred cccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcc
Q 005711 533 QGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSF 592 (681)
Q Consensus 533 ~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 592 (681)
++|++|++++|+++...+. +.++++|++|++++|+++...|..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4688888888888855555 77888888888888888877788888888888888888875
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.60 E-value=6.2e-09 Score=111.37 Aligned_cols=110 Identities=30% Similarity=0.263 Sum_probs=56.4
Q ss_pred CCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCcc
Q 005711 104 KLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLE 183 (681)
Q Consensus 104 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~ 183 (681)
.+..++.+++..|.+.. +-..+..+++|+.|++.+|++..+ ...+..+++|++|++++|.+ +... .+..+ +.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I-~~i~--~l~~l-~~L~ 143 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKI-TKLE--GLSTL-TLLK 143 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccc-cccc--chhhc-cchh
Confidence 34555555566665553 223355666667777777666633 22255566666666666632 1111 12222 4455
Q ss_pred EEEccCCcCccccCccccCCCCCCEEEccCccCccccc
Q 005711 184 KLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVH 221 (681)
Q Consensus 184 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~ 221 (681)
.|++++|.++.. ..+..++.|+.+++++|.+....+
T Consensus 144 ~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~ 179 (414)
T KOG0531|consen 144 ELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIEN 179 (414)
T ss_pred hheeccCcchhc--cCCccchhhhcccCCcchhhhhhh
Confidence 666666655421 234445555666666655554433
No 43
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.40 E-value=4.4e-07 Score=62.18 Aligned_cols=38 Identities=39% Similarity=0.838 Sum_probs=28.3
Q ss_pred HHhHHHHHHHHhcCCC-CCCCCCCCC-C--CCCCCCCceeec
Q 005711 41 LEDKASLLLFKSLVQD-PTQKLSSWV-G--SNCTNWTGVACN 78 (681)
Q Consensus 41 ~~~~~~l~~~~~~~~~-~~~~~~~w~-~--~~cc~w~gv~c~ 78 (681)
.+|.+||++||+++.. +.+.+.+|. . .+||.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 4677899999999995 568899994 2 699999999995
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.36 E-value=1.2e-08 Score=108.09 Aligned_cols=180 Identities=26% Similarity=0.320 Sum_probs=110.8
Q ss_pred CcccccCCCcceeecccccccccCccccCC-CCCccEEEcccCcce----------eccccccCCCCCCcEEECCCCcCC
Q 005711 389 PLNIVGCFQLLALIVNNNNLSGEIQPELDA-LDSLKILDISNNQIS----------GEIPLTLAGLKSLEIVDFSSNNLS 457 (681)
Q Consensus 389 p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~----------~~~p~~~~~l~~L~~L~L~~n~l~ 457 (681)
|..+....+|+.|.+.++.+... ..+.. -..|+.|.-. |.+. |.+...+ -...|.+.+.+.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHH
Confidence 66677777888888887776531 01111 1123333222 1211 1111110 0235666777777776
Q ss_pred CcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCcc-cccccccc
Q 005711 458 GSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKG-LFQLQGLE 536 (681)
Q Consensus 458 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~-l~~l~~L~ 536 (681)
.....+.-++.++.|+|++|++... ..+.+++.|+.||+++|.+. .+|.- ...++ |+
T Consensus 178 -~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~------------------~vp~l~~~gc~-L~ 235 (1096)
T KOG1859|consen 178 -LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR------------------HVPQLSMVGCK-LQ 235 (1096)
T ss_pred -hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc------------------cccccchhhhh-he
Confidence 5556666677788888888887632 25666677777776666654 33421 12344 88
Q ss_pred eeecCCCcCcccCCCcCCCCCCCEEECCCCcCcccCCc-cccCCCCCCeEecccCcceee
Q 005711 537 YLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPG-NISSLQELTLLNLSYNSFSGF 595 (681)
Q Consensus 537 ~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~ls~N~l~~~ 595 (681)
.|+|++|.++ ..-.+.++.+|+-||+++|-+++...- -+..+..|+.|++.+||+.|.
T Consensus 236 ~L~lrnN~l~-tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 236 LLNLRNNALT-TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred eeeecccHHH-hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 8999999887 566677888999999999988765321 235567888899999998764
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.3e-08 Score=96.93 Aligned_cols=150 Identities=23% Similarity=0.240 Sum_probs=64.3
Q ss_pred CCEEEccCCCCCCc-CCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCc-Ccc-ccCccccCCCCCCE
Q 005711 132 LKTLDLSYNKFVGV-VPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNS-FCG-EIPESLYYLKSLKH 208 (681)
Q Consensus 132 L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~-l~~-~~p~~l~~l~~L~~ 208 (681)
|++||||...++.. +-..+..+.+|+.|.+.++ .+...+...+++- .+|+.|+++.++ ++. ..---+.+++.|..
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~iAkN-~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVNTIAKN-SNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhcccccc-ccCcHHHHHHhcc-ccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 44455544444311 1112334444444444444 2333333344443 455555555443 221 01112456777777
Q ss_pred EEccCccCcccccC-----cCCcccEEECCCCCC---ccccchhhccCCCCCEEEccCCc-cccCCChhhcccCcccEEe
Q 005711 209 LDLEKNNLTGNVHD-----FYQSLLVLNLGSNRF---SGTLPCFAASAMSLTVLKLDNNS-VVGGIPTCIASLQALTHLN 279 (681)
Q Consensus 209 L~L~~n~l~~~~~~-----~~~~L~~L~L~~n~l---~~~~~~~~~~~~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~ 279 (681)
|+++.+.++..... .-++|+.|+++++.- ...+..-...+++|..|||++|. ++......|.+++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 77777766543221 122355555554421 11122223445555555555542 2212222333444444444
Q ss_pred cCCC
Q 005711 280 LSHN 283 (681)
Q Consensus 280 L~~n 283 (681)
++.|
T Consensus 345 lsRC 348 (419)
T KOG2120|consen 345 LSRC 348 (419)
T ss_pred hhhh
Confidence 4444
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.23 E-value=6.3e-08 Score=81.78 Aligned_cols=137 Identities=26% Similarity=0.323 Sum_probs=86.2
Q ss_pred CCCcEEECCCCcCCCcchhh---hhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccCCCCCcccccCCcc
Q 005711 444 KSLEIVDFSSNNLSGSLNDA---ITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNL 520 (681)
Q Consensus 444 ~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~ 520 (681)
..+..+||++|++- -+++. +.....|+..+|++|.+. ..|+.+ +...|..+.++|++|+
T Consensus 27 kE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kf----------------t~kf~t~t~lNl~~ne 88 (177)
T KOG4579|consen 27 KELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKF----------------TIKFPTATTLNLANNE 88 (177)
T ss_pred HHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHH----------------hhccchhhhhhcchhh
Confidence 34556677777664 23333 334456666777777776 334322 2223444556666666
Q ss_pred ccccCCcccccccccceeecCCCcCcccCCCcCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcceeeCCCCC
Q 005711 521 LHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQ 600 (681)
Q Consensus 521 l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~ 600 (681)
++ .+|+++..++.|+.|+++.|.+......+..+.++-.||..+|.+. +||-.+---+..-..++.++++.+..|.+.
T Consensus 89 is-dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~kl 166 (177)
T KOG4579|consen 89 IS-DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKL 166 (177)
T ss_pred hh-hchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcccc
Confidence 66 8888888899999999999988843333666888888888888877 566543222233344557777777666443
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=3.1e-08 Score=94.39 Aligned_cols=198 Identities=19% Similarity=0.136 Sum_probs=129.7
Q ss_pred cEEEEEcCCCCCccc-ccccccCC-CCCCEEECCCCcCCcc-ccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEe
Q 005711 83 HVVSINLTDTSLSGQ-VHPRLCKL-SFLEFLVLSSNAFTGR-ISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLREL 159 (681)
Q Consensus 83 ~v~~L~L~~~~l~g~-~~~~l~~l-~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 159 (681)
.|..+.+....+..+ +.+.+.-+ +.|++||||+..++.. +-..++.|.+|+.|.|.++++...+-..+..-.+|+.|
T Consensus 160 gV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~l 239 (419)
T KOG2120|consen 160 GVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRL 239 (419)
T ss_pred CeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceee
Confidence 356666654433332 22222222 4688999998887644 44456788999999999999988888888888999999
Q ss_pred eCCCCCCCCccC-CchhccccCCccEEEccCCcCccccCcc-ccC-CCCCCEEEccCccCc------ccccCcCCcccEE
Q 005711 160 ILKGNPELGGVF-PGWVGNFSMNLEKLDFSFNSFCGEIPES-LYY-LKSLKHLDLEKNNLT------GNVHDFYQSLLVL 230 (681)
Q Consensus 160 ~L~~n~~~~~~~-p~~l~~l~~~L~~L~L~~n~l~~~~p~~-l~~-l~~L~~L~L~~n~l~------~~~~~~~~~L~~L 230 (681)
+++.+.-++..- .--+.++ +.|+.|+++.|.+....-.. ... -++|+.|++++..-. .......++|.+|
T Consensus 240 nlsm~sG~t~n~~~ll~~sc-s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L 318 (419)
T KOG2120|consen 240 NLSMCSGFTENALQLLLSSC-SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL 318 (419)
T ss_pred ccccccccchhHHHHHHHhh-hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence 998874333211 1224455 78999999998876433221 122 257888888876421 1223345678999
Q ss_pred ECCCCC-CccccchhhccCCCCCEEEccCCccccCCChhh---cccCcccEEecCCC
Q 005711 231 NLGSNR-FSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCI---ASLQALTHLNLSHN 283 (681)
Q Consensus 231 ~L~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~L~~n 283 (681)
||++|. ++......+..++.|++|.++.|.. .+|..+ ...++|.+|++.++
T Consensus 319 DLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 319 DLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 998774 4545556778889999999999854 455543 45567777776554
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.17 E-value=4.8e-08 Score=103.65 Aligned_cols=196 Identities=29% Similarity=0.286 Sum_probs=123.7
Q ss_pred CCCCEEEccCCccccCC-ChhhcccCcccEEecCCCccccccCccccCC-CCCcEEeccCCCc----------cCCCChh
Q 005711 249 MSLTVLKLDNNSVVGGI-PTCIASLQALTHLNLSHNHLNYEISPRLVFF-EKLLLLDLSFNDL----------SGPLPSK 316 (681)
Q Consensus 249 ~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l----------~~~~p~~ 316 (681)
++++.|.+-.-.-.+.. |-.+..+.+|++|.+.++.+... ..+..+ ..|+.|.-. |.+ .|.+...
T Consensus 84 qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns 160 (1096)
T KOG1859|consen 84 QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNS 160 (1096)
T ss_pred hhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccc
Confidence 34444444333322222 55677888999999998887631 111111 122222211 111 1122111
Q ss_pred hhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCC
Q 005711 317 IAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCF 396 (681)
Q Consensus 317 ~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~ 396 (681)
+.. -.|...+.++|.+. .+...+.-++.|+.|+|++|+++.. +.+..++.|++|||++|.+.-..-....+|.
T Consensus 161 ~~W----n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~ 233 (1096)
T KOG1859|consen 161 PVW----NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK 233 (1096)
T ss_pred hhh----hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh
Confidence 111 15778888899887 5666677788999999999998754 3678889999999999998743323344555
Q ss_pred CcceeecccccccccCccccCCCCCccEEEcccCcceeccc-cccCCCCCCcEEECCCCcCC
Q 005711 397 QLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIP-LTLAGLKSLEIVDFSSNNLS 457 (681)
Q Consensus 397 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~ 457 (681)
|..|.+.+|.++... .+.++.+|+.||+++|-+.+--. ..+..+..|..|.|.+|.+-
T Consensus 234 -L~~L~lrnN~l~tL~--gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 234 -LQLLNLRNNALTTLR--GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred -heeeeecccHHHhhh--hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 888899988876432 35678888899999988765321 22445677888888888875
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.02 E-value=1.6e-06 Score=81.83 Aligned_cols=16 Identities=19% Similarity=0.090 Sum_probs=9.8
Q ss_pred CCCCCCEEEccCccCc
Q 005711 202 YLKSLKHLDLEKNNLT 217 (681)
Q Consensus 202 ~l~~L~~L~L~~n~l~ 217 (681)
+-|.|+......|++.
T Consensus 155 ~kp~Le~vicgrNRle 170 (388)
T COG5238 155 DKPKLEVVICGRNRLE 170 (388)
T ss_pred cCCCceEEEeccchhc
Confidence 3456666666666654
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=2.1e-06 Score=82.26 Aligned_cols=86 Identities=24% Similarity=0.290 Sum_probs=45.2
Q ss_pred CCCCCCEEECCCCcCCc--cccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCC
Q 005711 104 KLSFLEFLVLSSNAFTG--RISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMN 181 (681)
Q Consensus 104 ~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~ 181 (681)
..+.++.+||.+|.|++ .+...+.+++.|++|+|+.|.+...+-..-..+.+|++|.|.+..+--......+..+ +.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~l-P~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDL-PK 147 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcc-hh
Confidence 45667777777777653 2445556777777777777776633221112344566666655422111222233333 44
Q ss_pred ccEEEccCC
Q 005711 182 LEKLDFSFN 190 (681)
Q Consensus 182 L~~L~L~~n 190 (681)
++.|.++.|
T Consensus 148 vtelHmS~N 156 (418)
T KOG2982|consen 148 VTELHMSDN 156 (418)
T ss_pred hhhhhhccc
Confidence 555555555
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.95 E-value=7e-07 Score=75.59 Aligned_cols=114 Identities=17% Similarity=0.243 Sum_probs=54.3
Q ss_pred CCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccCCCCCcccccCCccccc
Q 005711 444 KSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHG 523 (681)
Q Consensus 444 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g 523 (681)
..|...+|++|.+....+..-..++.++.+++++|+++ .+|..+..++.|+.++++.|.+.
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~------------------ 113 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN------------------ 113 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc------------------
Confidence 34444455555544222222223344555555555554 44444555555555555554443
Q ss_pred cCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCcccc
Q 005711 524 TIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNIS 577 (681)
Q Consensus 524 ~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~ 577 (681)
..|..+..+.++-.|+..+|.+. .||. +..-+..-..++.++.+.+.-|..++
T Consensus 114 ~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klq 167 (177)
T KOG4579|consen 114 AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQ 167 (177)
T ss_pred cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccccc
Confidence 34455555666666666666555 3443 33223333334455556655554433
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.84 E-value=5.8e-06 Score=78.21 Aligned_cols=202 Identities=27% Similarity=0.307 Sum_probs=91.0
Q ss_pred hcccCcccEEecCCCccccccCccc----cCCCCCcEEeccCCCccCCC----Chhh----hhcccCCCccEEEccCCCC
Q 005711 269 IASLQALTHLNLSHNHLNYEISPRL----VFFEKLLLLDLSFNDLSGPL----PSKI----AQTTEKAGLVLLDLSHNRF 336 (681)
Q Consensus 269 l~~l~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~L~~n~l~~~~----p~~~----~~~~~~~~L~~L~Ls~n~l 336 (681)
+..+..+..++|++|.+...-..++ .+-.+|+..+++.- ++|.. ++.+ ..+.+++.|+..+||+|.+
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 3446777888888887765443333 33455666655542 22222 2211 1122334555555555555
Q ss_pred cCCCcccc----cCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccC
Q 005711 337 SGEIPLKI----TELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEI 412 (681)
Q Consensus 337 ~~~~p~~l----~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~ 412 (681)
....|..+ +.-+.|.+|.+++|.+.-.--..++. .|.+ +..| .....-+.|+++....|++..-.
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~--la~n-------KKaa~kp~Le~vicgrNRlengs 173 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFH--LAYN-------KKAADKPKLEVVICGRNRLENGS 173 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHH--HHHH-------hhhccCCCceEEEeccchhccCc
Confidence 44433322 23344555555555432110000110 0000 0000 00112334444444444443110
Q ss_pred ----ccccCCCCCccEEEcccCcceecc-----ccccCCCCCCcEEECCCCcCCCc----chhhhhcCCCCCEEEccCCc
Q 005711 413 ----QPELDALDSLKILDISNNQISGEI-----PLTLAGLKSLEIVDFSSNNLSGS----LNDAITKWTNLKYFSIARNK 479 (681)
Q Consensus 413 ----~~~~~~l~~L~~L~Ls~n~l~~~~-----p~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~ 479 (681)
...+..-..|+.+.+..|.+.-.- -..+..+.+|+.||+.+|-++-. +..++..++.|+.|.+.+|-
T Consensus 174 ~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 174 KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 111222245666666666654221 12234566777777777776622 23344556667777777776
Q ss_pred Ccc
Q 005711 480 LSG 482 (681)
Q Consensus 480 l~~ 482 (681)
++.
T Consensus 254 ls~ 256 (388)
T COG5238 254 LSN 256 (388)
T ss_pred hcc
Confidence 654
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=7.6e-06 Score=78.49 Aligned_cols=60 Identities=30% Similarity=0.349 Sum_probs=37.3
Q ss_pred cccccccceeecCCCcCcccC--CCcCCCCCCCEEECCCCcCcccCCc------cccCCCCCCeEecc
Q 005711 529 LFQLQGLEYLNLSFNFLDGQV--PGLYRLRSLRALDLSHNSLTGQIPG------NISSLQELTLLNLS 588 (681)
Q Consensus 529 l~~l~~L~~L~Ls~N~l~~~i--p~~~~l~~L~~L~Ls~N~l~~~~p~------~l~~l~~L~~L~ls 588 (681)
...++.+..|+|+.|++.... .++..+++|..|.+++|.+....-. -++.++.+++|+=+
T Consensus 220 se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 220 SEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred CCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 344556667788888776543 2366778888888888877644322 13556666766543
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.70 E-value=7.6e-05 Score=77.02 Aligned_cols=135 Identities=16% Similarity=0.192 Sum_probs=81.2
Q ss_pred cCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccc
Q 005711 416 LDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQ 495 (681)
Q Consensus 416 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 495 (681)
+..+.+++.|++++|.++ .+|. -..+|++|.+++|.--..+|+.+. ++|++|++++|.....+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccc
Confidence 345688999999999877 4562 235699999998654445665443 5899999998833234553 466
Q ss_pred eeecccCcc--ccCCC-CCcccccCCcccc--ccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCc
Q 005711 496 MMDFSTNKF--MGFIP-DAVGMDLSDNLLH--GTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNS 567 (681)
Q Consensus 496 ~L~ls~n~~--~~~~p-~~~~L~Ls~N~l~--g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~ 567 (681)
.|+++.+.. .+.+| ....|.+.+++.. ..+|.. -.++|++|++++|.... .|. +. .+|+.|+++.|.
T Consensus 116 ~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 116 SLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNII-LPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred eEEeCCCCCcccccCcchHhheeccccccccccccccc--cCCcccEEEecCCCccc-Cccccc--ccCcEEEecccc
Confidence 777766543 12333 3445655432211 011111 11578888888777552 333 32 578888887763
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.66 E-value=5.6e-05 Score=51.82 Aligned_cols=38 Identities=37% Similarity=0.586 Sum_probs=29.5
Q ss_pred CCccEEEccCCcCccccCccccCCCCCCEEEccCccCcc
Q 005711 180 MNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTG 218 (681)
Q Consensus 180 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 218 (681)
++|++|++++|+++ .+|..++++++|++|++++|+++.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 36888888888888 567778889999999998888874
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.59 E-value=4.2e-05 Score=52.46 Aligned_cols=35 Identities=40% Similarity=0.580 Sum_probs=17.7
Q ss_pred ccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCc
Q 005711 534 GLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLT 569 (681)
Q Consensus 534 ~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~ 569 (681)
+|++|++++|+++ .+|. ++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 3333 555555555555555555
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.59 E-value=0.0003 Score=72.77 Aligned_cols=58 Identities=10% Similarity=0.104 Sum_probs=33.7
Q ss_pred cccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCC
Q 005711 101 RLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164 (681)
Q Consensus 101 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 164 (681)
.+..+.++++|++++|.++. +|. --.+|++|+++++.--..+|..+ .++|++|++++|
T Consensus 47 r~~~~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHHHhcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 34556777888888776653 341 12357777777643323455443 246666666665
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.24 E-value=0.00051 Score=62.71 Aligned_cols=104 Identities=28% Similarity=0.226 Sum_probs=50.4
Q ss_pred CCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEE
Q 005711 107 FLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLD 186 (681)
Q Consensus 107 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~ 186 (681)
+...+||++|++... +.|..++.|.+|.|++|+|+.+-|.--..+++|+.|.|.+|.+..-.--..+..+ ++|++|.
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~-p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASC-PKLEYLT 119 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccC-Cccceee
Confidence 344556666555421 2244556666666666666644444333445555555555532211111122233 4555555
Q ss_pred ccCCcCcccc---CccccCCCCCCEEEccC
Q 005711 187 FSFNSFCGEI---PESLYYLKSLKHLDLEK 213 (681)
Q Consensus 187 L~~n~l~~~~---p~~l~~l~~L~~L~L~~ 213 (681)
+-+|..+..- -..+..+++|+.||+.+
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 5555544211 12345566777777655
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.20 E-value=0.00018 Score=80.77 Aligned_cols=64 Identities=22% Similarity=0.351 Sum_probs=33.6
Q ss_pred CCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCcCccc-cCccccCCCCCCEEEccCccCc
Q 005711 154 RNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGE-IPESLYYLKSLKHLDLEKNNLT 217 (681)
Q Consensus 154 ~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~ 217 (681)
.+|++|++++...+....|..++.+.|+|+.|.+++-.+... .-.-..++++|..||+++.+++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~ 186 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS 186 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc
Confidence 356666666655555555555555556666666655444321 1112334555666666655554
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.12 E-value=0.0024 Score=55.89 Aligned_cols=122 Identities=20% Similarity=0.242 Sum_probs=43.4
Q ss_pred cccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCc
Q 005711 343 KITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSL 422 (681)
Q Consensus 343 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 422 (681)
.|..+++|+.+.+.+ .+.......|.++++|+.+++.++ +...-...|..+.+++.+.+.+ .+.......|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 344555566666553 334333444555556666666553 3333333444444555555543 2222222334445555
Q ss_pred cEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCC
Q 005711 423 KILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNL 470 (681)
Q Consensus 423 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 470 (681)
+.+++..+ +.......|.++ +|+.+.+.. .+.......|.++++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 55555443 332333444554 555555544 2222333344444443
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.11 E-value=0.00032 Score=78.78 Aligned_cols=133 Identities=20% Similarity=0.223 Sum_probs=81.2
Q ss_pred cEEEEEcCCCCCcc-cccccc-cCCCCCCEEECCCCcCCcc-ccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEe
Q 005711 83 HVVSINLTDTSLSG-QVHPRL-CKLSFLEFLVLSSNAFTGR-ISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLREL 159 (681)
Q Consensus 83 ~v~~L~L~~~~l~g-~~~~~l-~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 159 (681)
.+.+||+++..... .-+..+ ..||.|++|.+++-.+... ......++++|+.||+|+.+++.. ..++++++|+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 56677777654321 112233 3478888888887666433 344556788888888888887743 567788888888
Q ss_pred eCCCCCCCCccCCchhccccCCccEEEccCCcCcccc--Cc----cccCCCCCCEEEccCccCcc
Q 005711 160 ILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEI--PE----SLYYLKSLKHLDLEKNNLTG 218 (681)
Q Consensus 160 ~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~--p~----~l~~l~~L~~L~L~~n~l~~ 218 (681)
.+.+=.+.....-..+.++ ++|++||+|........ .. .-..+|+|+.||.+++.+.+
T Consensus 201 ~mrnLe~e~~~~l~~LF~L-~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNL-KKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred hccCCCCCchhhHHHHhcc-cCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 7766533332333456667 77888888776543211 11 11246677777777666554
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.03 E-value=0.0011 Score=60.60 Aligned_cols=35 Identities=40% Similarity=0.502 Sum_probs=16.6
Q ss_pred cccccceeecCCCcCcccCCC----cCCCCCCCEEECCC
Q 005711 531 QLQGLEYLNLSFNFLDGQVPG----LYRLRSLRALDLSH 565 (681)
Q Consensus 531 ~l~~L~~L~Ls~N~l~~~ip~----~~~l~~L~~L~Ls~ 565 (681)
.|+.|++|.+-+|..+..--- +..+++|+.||++.
T Consensus 111 ~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 111 SCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 345555555555555422111 33455555555544
No 63
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.82 E-value=0.00011 Score=74.20 Aligned_cols=84 Identities=20% Similarity=0.100 Sum_probs=43.1
Q ss_pred CCCEEEccCCCCCCcC--CccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCc-CccccCcc-ccCCCCC
Q 005711 131 GLKTLDLSYNKFVGVV--PDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNS-FCGEIPES-LYYLKSL 206 (681)
Q Consensus 131 ~L~~L~Ls~n~l~~~~--p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~-l~~~~p~~-l~~l~~L 206 (681)
.|+.|.+.+++=.+.- -..-.+++++++|++.++..++...-..+++.+++|++|++..|. ++...-.. -..+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 5777777776543322 123356777777777777544443333344444566666666532 33221111 1234555
Q ss_pred CEEEccCc
Q 005711 207 KHLDLEKN 214 (681)
Q Consensus 207 ~~L~L~~n 214 (681)
++|+++.+
T Consensus 219 ~~lNlSwc 226 (483)
T KOG4341|consen 219 KYLNLSWC 226 (483)
T ss_pred HHhhhccC
Confidence 55555554
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.76 E-value=0.0008 Score=64.14 Aligned_cols=37 Identities=41% Similarity=0.436 Sum_probs=17.5
Q ss_pred CCCCCCEEEccCC--CCCCcCCccccCCCCCCEeeCCCC
Q 005711 128 GLSGLKTLDLSYN--KFVGVVPDAIMKLRNLRELILKGN 164 (681)
Q Consensus 128 ~l~~L~~L~Ls~n--~l~~~~p~~~~~l~~L~~L~L~~n 164 (681)
.|++|++|.+|.| ++++.++.-...+++|+++++++|
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence 4445555555555 333333333334455555555555
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.72 E-value=0.0065 Score=53.17 Aligned_cols=107 Identities=18% Similarity=0.207 Sum_probs=61.8
Q ss_pred cccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCC
Q 005711 366 ARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKS 445 (681)
Q Consensus 366 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 445 (681)
..|.++++|+.+.+.. .+...-...|..+.+++.+.+.++ +.......|.++++++.+.+.+ .+.......|..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 4577888899999875 455555667778888888888774 5545555677787888888866 444344556777888
Q ss_pred CcEEECCCCcCCCcchhhhhcCCCCCEEEccC
Q 005711 446 LEIVDFSSNNLSGSLNDAITKWTNLKYFSIAR 477 (681)
Q Consensus 446 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 477 (681)
|+.+++..+ +.......+.++ .|+.+.+..
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 888888765 544445566666 788887765
No 66
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.61 E-value=0.00013 Score=73.69 Aligned_cols=108 Identities=21% Similarity=0.223 Sum_probs=67.0
Q ss_pred CCCCEEECCCCcCCcc--ccccccCCCCCCEEEccCCC-CCCcCCccc-cCCCCCCEeeCCCCCCCCccCCchhccccCC
Q 005711 106 SFLEFLVLSSNAFTGR--ISTCFGGLSGLKTLDLSYNK-FVGVVPDAI-MKLRNLRELILKGNPELGGVFPGWVGNFSMN 181 (681)
Q Consensus 106 ~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~-~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~ 181 (681)
..|+.|.++++.=.+. +-..-.+++++++|++.++. ++...-..+ ..+++|+++++..+..++...-..++.-.++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 4688999988754333 33445689999999998886 332211122 4688999999998755444433334433489
Q ss_pred ccEEEccCCc-Cccc-cCccccCCCCCCEEEccC
Q 005711 182 LEKLDFSFNS-FCGE-IPESLYYLKSLKHLDLEK 213 (681)
Q Consensus 182 L~~L~L~~n~-l~~~-~p~~l~~l~~L~~L~L~~ 213 (681)
|++|+++.+. +++. +-.-..+++.++.+.+.+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kG 251 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKG 251 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcc
Confidence 9999999886 3331 111233455566655554
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.66 E-value=0.0073 Score=57.75 Aligned_cols=60 Identities=28% Similarity=0.360 Sum_probs=27.5
Q ss_pred CCccEEEccCC--CCcCCCcccccCCCCCCEEeccCCccccccccc---cCCCCCCCEEEccCCcCc
Q 005711 324 AGLVLLDLSHN--RFSGEIPLKITELKSLQALFLSNNLLIGEIPAR---IGNLTYLQVIDLSHNMLS 385 (681)
Q Consensus 324 ~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~---l~~l~~L~~L~Ls~n~l~ 385 (681)
++|+.|.++.| ++.+.++.....+++|+++++++|++.. +.. +..+.+|..||+.+|..+
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCcc
Confidence 35555555555 3333333333344555555555555531 111 233444555555555433
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.23 E-value=0.00086 Score=64.17 Aligned_cols=78 Identities=27% Similarity=0.258 Sum_probs=39.1
Q ss_pred cEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcC-CccccCCCCCCEeeC
Q 005711 83 HVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVV-PDAIMKLRNLRELIL 161 (681)
Q Consensus 83 ~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L 161 (681)
.|.+|+.-++++... ....+++.|+.|.||-|.|+..-| |..|++|+.|+|..|.|...- -..+.++++|+.|.|
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 455666666655432 112445566666666666654322 455666666666666554210 012344455555555
Q ss_pred CCC
Q 005711 162 KGN 164 (681)
Q Consensus 162 ~~n 164 (681)
..|
T Consensus 96 ~EN 98 (388)
T KOG2123|consen 96 DEN 98 (388)
T ss_pred ccC
Confidence 544
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.21 E-value=0.0061 Score=34.65 Aligned_cols=19 Identities=37% Similarity=0.557 Sum_probs=9.2
Q ss_pred CCEEEccCCCCCCcCCcccc
Q 005711 132 LKTLDLSYNKFVGVVPDAIM 151 (681)
Q Consensus 132 L~~L~Ls~n~l~~~~p~~~~ 151 (681)
|++|||++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4444443
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.18 E-value=0.0071 Score=34.40 Aligned_cols=19 Identities=58% Similarity=0.758 Sum_probs=9.9
Q ss_pred CCEEECCCCcCcccCCcccc
Q 005711 558 LRALDLSHNSLTGQIPGNIS 577 (681)
Q Consensus 558 L~~L~Ls~N~l~~~~p~~l~ 577 (681)
|+.||+++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4554443
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.89 E-value=0.0039 Score=59.82 Aligned_cols=61 Identities=28% Similarity=0.317 Sum_probs=26.7
Q ss_pred CccEEEccCCCCcCCCcccccCCCCCCEEeccCCcccccc-ccccCCCCCCCEEEccCCcCccc
Q 005711 325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEI-PARIGNLTYLQVIDLSHNMLSGS 387 (681)
Q Consensus 325 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~ 387 (681)
.|++|.|+-|+|+..-| +..|++|++|+|..|.|...- -..+.++++|+.|.|..|.-.|.
T Consensus 42 ~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 42 LLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGE 103 (388)
T ss_pred cceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccc
Confidence 44444444444442222 344445555555555443210 12234455555555555544443
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.68 E-value=0.0071 Score=66.39 Aligned_cols=60 Identities=27% Similarity=0.107 Sum_probs=31.5
Q ss_pred CccEEEccCCC-CcCCCcccccC-CCCCCEEeccCCc-ccccc-ccccCCCCCCCEEEccCCcC
Q 005711 325 GLVLLDLSHNR-FSGEIPLKITE-LKSLQALFLSNNL-LIGEI-PARIGNLTYLQVIDLSHNML 384 (681)
Q Consensus 325 ~L~~L~Ls~n~-l~~~~p~~l~~-l~~L~~L~L~~n~-l~~~~-~~~l~~l~~L~~L~Ls~n~l 384 (681)
+|+.++++.+. +++..-..+.. +++|+.|.+.++. ++... -.....++.|++|+++.+..
T Consensus 244 ~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 244 KLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred CcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 56666666665 44332222222 5677777766555 33221 12224466677777776653
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.15 E-value=0.0025 Score=59.50 Aligned_cols=83 Identities=16% Similarity=0.055 Sum_probs=68.2
Q ss_pred CCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEe
Q 005711 80 QTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLREL 159 (681)
Q Consensus 80 ~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 159 (681)
...+|+.||++.+.+.. +-..+..++.+..||++.|.+. -.|..++.+..++++++..|+.+ ..|.+++..++++++
T Consensus 40 ~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 34689999999887752 2345667788899999988876 46888889999999999999888 779999999999999
Q ss_pred eCCCCC
Q 005711 160 ILKGNP 165 (681)
Q Consensus 160 ~L~~n~ 165 (681)
++.+|+
T Consensus 117 e~k~~~ 122 (326)
T KOG0473|consen 117 EQKKTE 122 (326)
T ss_pred hhccCc
Confidence 998884
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.73 E-value=0.013 Score=64.33 Aligned_cols=113 Identities=25% Similarity=0.192 Sum_probs=61.0
Q ss_pred CCCCCCEEECCCCc-CCcc-ccccccCCCCCCEEEccCC-CCCCcCC----ccccCCCCCCEeeCCCCCCCCccCCchhc
Q 005711 104 KLSFLEFLVLSSNA-FTGR-ISTCFGGLSGLKTLDLSYN-KFVGVVP----DAIMKLRNLRELILKGNPELGGVFPGWVG 176 (681)
Q Consensus 104 ~l~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~~L~Ls~n-~l~~~~p----~~~~~l~~L~~L~L~~n~~~~~~~p~~l~ 176 (681)
.++.|+.|.+..+. +... +-.....++.|+.|+++++ ......+ .....+.+|+.|+++++...+...-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 35677777777653 3221 2334556777777777762 2111111 22345577777777776433333333333
Q ss_pred cccCCccEEEccCCc-Cccc-cCccccCCCCCCEEEccCccC
Q 005711 177 NFSMNLEKLDFSFNS-FCGE-IPESLYYLKSLKHLDLEKNNL 216 (681)
Q Consensus 177 ~l~~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~L~L~~n~l 216 (681)
..+++|++|.+.++. ++.. +-.....++.|++|+++++..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 323677777766666 4432 112233567788888876654
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.51 E-value=0.0016 Score=70.06 Aligned_cols=87 Identities=28% Similarity=0.235 Sum_probs=44.6
Q ss_pred cccEEecCCCccccccC----ccccCCCCCcEEeccCCCccCCCChhhhhc-ccC-CCccEEEccCCCCcCC----Cccc
Q 005711 274 ALTHLNLSHNHLNYEIS----PRLVFFEKLLLLDLSFNDLSGPLPSKIAQT-TEK-AGLVLLDLSHNRFSGE----IPLK 343 (681)
Q Consensus 274 ~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~-~~~-~~L~~L~Ls~n~l~~~----~p~~ 343 (681)
.+..+.|.+|.+..... ..+...+.|..|++++|.+.+.--..+... ... ..++.|++..|.+++. +...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 36677777777664322 234456677777777777763221112111 110 1345555655655532 2333
Q ss_pred ccCCCCCCEEeccCCcc
Q 005711 344 ITELKSLQALFLSNNLL 360 (681)
Q Consensus 344 l~~l~~L~~L~L~~n~l 360 (681)
+.....++.++++.|.+
T Consensus 168 L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGL 184 (478)
T ss_pred HhcccchhHHHHHhccc
Confidence 44455566666666654
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.48 E-value=0.18 Score=26.52 Aligned_cols=13 Identities=54% Similarity=0.810 Sum_probs=5.0
Q ss_pred CCCEEEccCCCCC
Q 005711 131 GLKTLDLSYNKFV 143 (681)
Q Consensus 131 ~L~~L~Ls~n~l~ 143 (681)
+|++|+|++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4455555555443
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.03 E-value=0.0022 Score=69.01 Aligned_cols=87 Identities=29% Similarity=0.220 Sum_probs=51.4
Q ss_pred CCEEEccCCccccCCChh----hcccCcccEEecCCCccccccCcc----ccCC-CCCcEEeccCCCccCCCChhhh-hc
Q 005711 251 LTVLKLDNNSVVGGIPTC----IASLQALTHLNLSHNHLNYEISPR----LVFF-EKLLLLDLSFNDLSGPLPSKIA-QT 320 (681)
Q Consensus 251 L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~L~~n~l~~~~~~~----l~~l-~~L~~L~L~~n~l~~~~p~~~~-~~ 320 (681)
+..+.+.+|.+....... +.....|+.|++++|.+.+..-.. +... ..+++|++..|.+++.--..+. .+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 667778888776543333 345677888888888876432211 2222 4566777777777644322221 12
Q ss_pred ccCCCccEEEccCCCCc
Q 005711 321 TEKAGLVLLDLSHNRFS 337 (681)
Q Consensus 321 ~~~~~L~~L~Ls~n~l~ 337 (681)
.....++.++++.|.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLI 185 (478)
T ss_pred hcccchhHHHHHhcccc
Confidence 22347788888888764
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.01 E-value=0.034 Score=51.13 Aligned_cols=83 Identities=20% Similarity=0.218 Sum_probs=47.7
Q ss_pred CCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCc-CccccCccccCCCCCCEE
Q 005711 131 GLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNS-FCGEIPESLYYLKSLKHL 209 (681)
Q Consensus 131 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L 209 (681)
.++.+|-++..|..+.-..+.+++.++.|.+.++..+...--..++...++|+.|++++|. ++..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 3556666666665554455566666666666666443332222333444677777777775 443333446667777777
Q ss_pred EccC
Q 005711 210 DLEK 213 (681)
Q Consensus 210 ~L~~ 213 (681)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6654
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.60 E-value=0.027 Score=52.77 Aligned_cols=64 Identities=20% Similarity=0.128 Sum_probs=36.5
Q ss_pred cccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcc
Q 005711 527 KGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSF 592 (681)
Q Consensus 527 ~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 592 (681)
..+..++.+..|+++.|.+. ..|. ++....+..+++..|..+ ..|.++...+.+++++.-.|+|
T Consensus 59 ~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 59 KNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred cchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcc
Confidence 34444555666666666655 3333 555555556666666555 4555566666666666666655
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.90 E-value=0.79 Score=27.02 Aligned_cols=14 Identities=43% Similarity=0.648 Sum_probs=8.7
Q ss_pred CCCCEEEccCCCCC
Q 005711 130 SGLKTLDLSYNKFV 143 (681)
Q Consensus 130 ~~L~~L~Ls~n~l~ 143 (681)
++|++|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45666666666665
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.90 E-value=0.79 Score=27.02 Aligned_cols=14 Identities=43% Similarity=0.648 Sum_probs=8.7
Q ss_pred CCCCEEEccCCCCC
Q 005711 130 SGLKTLDLSYNKFV 143 (681)
Q Consensus 130 ~~L~~L~Ls~n~l~ 143 (681)
++|++|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45666666666665
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.89 E-value=0.73 Score=27.19 Aligned_cols=14 Identities=57% Similarity=0.816 Sum_probs=8.3
Q ss_pred CCCCEEECCCCcCc
Q 005711 556 RSLRALDLSHNSLT 569 (681)
Q Consensus 556 ~~L~~L~Ls~N~l~ 569 (681)
++|+.|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45566666666665
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.89 E-value=0.73 Score=27.19 Aligned_cols=14 Identities=57% Similarity=0.816 Sum_probs=8.3
Q ss_pred CCCCEEECCCCcCc
Q 005711 556 RSLRALDLSHNSLT 569 (681)
Q Consensus 556 ~~L~~L~Ls~N~l~ 569 (681)
++|+.|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45566666666665
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.02 E-value=0.25 Score=45.63 Aligned_cols=81 Identities=23% Similarity=0.270 Sum_probs=46.4
Q ss_pred cEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCcc-ccccc-cCCCCCCEEEccCC-CCCCcCCccccCCCCCCEe
Q 005711 83 HVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGR-ISTCF-GGLSGLKTLDLSYN-KFVGVVPDAIMKLRNLREL 159 (681)
Q Consensus 83 ~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~-~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L 159 (681)
.|..+|-++..+...--..+.+++.++.|.+.++.--+. --+.+ +-.++|+.|+|++| +|+...-..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 477777777777665555667777777777776643222 00011 13456677777755 3554434445566666666
Q ss_pred eCCC
Q 005711 160 ILKG 163 (681)
Q Consensus 160 ~L~~ 163 (681)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 5544
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=80.86 E-value=0.62 Score=26.90 Aligned_cols=13 Identities=38% Similarity=0.726 Sum_probs=4.9
Q ss_pred CCcEEECCCCcCC
Q 005711 445 SLEIVDFSSNNLS 457 (681)
Q Consensus 445 ~L~~L~L~~n~l~ 457 (681)
+|++|++++|+++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 4444444444443
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=65.31 E-value=5.7 Score=23.56 Aligned_cols=14 Identities=43% Similarity=0.667 Sum_probs=9.1
Q ss_pred CCCCEEECCCCcCc
Q 005711 556 RSLRALDLSHNSLT 569 (681)
Q Consensus 556 ~~L~~L~Ls~N~l~ 569 (681)
++|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666665
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=62.94 E-value=5.4 Score=23.62 Aligned_cols=13 Identities=54% Similarity=0.790 Sum_probs=7.2
Q ss_pred CCCEEECCCCcCc
Q 005711 557 SLRALDLSHNSLT 569 (681)
Q Consensus 557 ~L~~L~Ls~N~l~ 569 (681)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4555555555555
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=57.65 E-value=8.7 Score=23.11 Aligned_cols=14 Identities=64% Similarity=0.783 Sum_probs=8.2
Q ss_pred CCCCEEECCCCcCc
Q 005711 556 RSLRALDLSHNSLT 569 (681)
Q Consensus 556 ~~L~~L~Ls~N~l~ 569 (681)
++|+.|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35566666666654
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=56.54 E-value=6.2 Score=50.78 Aligned_cols=37 Identities=27% Similarity=0.295 Sum_probs=25.6
Q ss_pred ECCCCcCcccCCccccCCCCCCeEecccCcceeeCCC
Q 005711 562 DLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPW 598 (681)
Q Consensus 562 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 598 (681)
||++|+|+...+..|..+++|+.|+|++|++.|.|.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L 37 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGL 37 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccccccc
Confidence 5677777765566667777777777777777776653
No 90
>PF15102 TMEM154: TMEM154 protein family
Probab=56.06 E-value=5.6 Score=34.76 Aligned_cols=30 Identities=7% Similarity=0.011 Sum_probs=12.8
Q ss_pred eeehhheehhhhhhhhhhhccccccceeec
Q 005711 649 WAFCLSFFVSFYLGVVALFCSARTRRYILQ 678 (681)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (681)
.++++..++++++.+++++...+.|||+.|
T Consensus 59 LmIlIP~VLLvlLLl~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 59 LMILIPLVLLVLLLLSVVCLVIYYKRKRTK 88 (146)
T ss_pred EEEeHHHHHHHHHHHHHHHheeEEeecccC
Confidence 333444344433333334444444555544
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=48.16 E-value=82 Score=33.60 Aligned_cols=84 Identities=20% Similarity=0.194 Sum_probs=39.2
Q ss_pred CccEEEcccCcceeccccc--cCCCCCCcEEECCCCcC---C--Ccchhhh----hcCCCCCEEEccCCcCcccCCc---
Q 005711 421 SLKILDISNNQISGEIPLT--LAGLKSLEIVDFSSNNL---S--GSLNDAI----TKWTNLKYFSIARNKLSGNLPN--- 486 (681)
Q Consensus 421 ~L~~L~Ls~n~l~~~~p~~--~~~l~~L~~L~L~~n~l---~--~~~~~~~----~~l~~L~~L~L~~n~l~~~~p~--- 486 (681)
.++.|...+|.+.|+.... ...-++.+++++..-.- . +...... ....-+..+.++.+.+....-.
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in 434 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAIN 434 (553)
T ss_pred eeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHH
Confidence 4777777777766554322 22334455555443221 0 0000000 0112355566666665532221
Q ss_pred ccccCCccceeecccCcc
Q 005711 487 WLFSFQAIQMMDFSTNKF 504 (681)
Q Consensus 487 ~~~~l~~L~~L~ls~n~~ 504 (681)
.+..-+.+..||+++|..
T Consensus 435 ~l~stqtl~kldisgn~m 452 (553)
T KOG4242|consen 435 KLLSTQTLAKLDISGNGM 452 (553)
T ss_pred hhccCcccccccccCCCc
Confidence 223345677777777754
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=42.01 E-value=11 Score=40.56 Aligned_cols=12 Identities=33% Similarity=0.271 Sum_probs=5.7
Q ss_pred ccEEECCCCCCc
Q 005711 227 LLVLNLGSNRFS 238 (681)
Q Consensus 227 L~~L~L~~n~l~ 238 (681)
|++|-+.+|.+.
T Consensus 272 Leel~l~GNPlc 283 (585)
T KOG3763|consen 272 LEELVLEGNPLC 283 (585)
T ss_pred HHHeeecCCccc
Confidence 444445555443
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=36.53 E-value=17 Score=39.34 Aligned_cols=64 Identities=25% Similarity=0.219 Sum_probs=38.4
Q ss_pred CCCCCcccccCCcccccc--CCcccccccccceeecCCC--cCcccCCCcCC--CCCCCEEECCCCcCccc
Q 005711 507 FIPDAVGMDLSDNLLHGT--IPKGLFQLQGLEYLNLSFN--FLDGQVPGLYR--LRSLRALDLSHNSLTGQ 571 (681)
Q Consensus 507 ~~p~~~~L~Ls~N~l~g~--ip~~l~~l~~L~~L~Ls~N--~l~~~ip~~~~--l~~L~~L~Ls~N~l~~~ 571 (681)
..|....+.|++|++... +..--..-+.|+.|+||+| .+. ..+++.. ...|++|-+.+|.+...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~-~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS-SESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc-chhhhhhhcCCCHHHeeecCCccccc
Confidence 456667788888887511 1111123467888888888 443 2222332 34678888888887644
No 94
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=34.42 E-value=12 Score=29.33 Aligned_cols=14 Identities=21% Similarity=0.380 Sum_probs=5.8
Q ss_pred hhhhhhhhcccccc
Q 005711 660 YLGVVALFCSARTR 673 (681)
Q Consensus 660 ~~~~~~~~~~~~~~ 673 (681)
++.+++++|.+|+|
T Consensus 47 ~VilwfvCC~kRkr 60 (94)
T PF05393_consen 47 LVILWFVCCKKRKR 60 (94)
T ss_pred HHHHHHHHHHHhhh
Confidence 33344444444443
No 95
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=32.45 E-value=12 Score=24.39 Aligned_cols=12 Identities=8% Similarity=0.301 Sum_probs=4.9
Q ss_pred hheehhhhhhhh
Q 005711 653 LSFFVSFYLGVV 664 (681)
Q Consensus 653 ~~~~~~~~~~~~ 664 (681)
+++++|+++.++
T Consensus 10 v~V~vg~~iiii 21 (38)
T PF02439_consen 10 VAVVVGMAIIII 21 (38)
T ss_pred HHHHHHHHHHHH
Confidence 344444444333
No 96
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=31.59 E-value=41 Score=19.61 Aligned_cols=11 Identities=64% Similarity=0.737 Sum_probs=5.3
Q ss_pred CCCCEeeCCCC
Q 005711 154 RNLRELILKGN 164 (681)
Q Consensus 154 ~~L~~L~L~~n 164 (681)
++|++|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34455555544
No 97
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=27.49 E-value=86 Score=33.44 Aligned_cols=109 Identities=22% Similarity=0.155 Sum_probs=50.9
Q ss_pred CCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCccc---ccCCCcceeecccccccccCccccC---CCC
Q 005711 347 LKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNI---VGCFQLLALIVNNNNLSGEIQPELD---ALD 420 (681)
Q Consensus 347 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~---~~~~~L~~L~l~~n~l~~~~~~~~~---~l~ 420 (681)
-+.+++++++.|.+....|..+..-.. -+.++.+.++...-..+ .+-..+.+++++.|.....+|.... .-.
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p~~--pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~ 241 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQPGN--PLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTL 241 (553)
T ss_pred cchhhhhccCCCcccccCCccccCCCC--ccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhh
Confidence 356777888888776666554433211 14445554432111111 1223456666666666655554321 112
Q ss_pred CccEEEcccCccee---ccccccCCCCCCcEEECCCCcCC
Q 005711 421 SLKILDISNNQISG---EIPLTLAGLKSLEIVDFSSNNLS 457 (681)
Q Consensus 421 ~L~~L~Ls~n~l~~---~~p~~~~~l~~L~~L~L~~n~l~ 457 (681)
.++.++.+.-.+.- .-+.....-++++..+++.|..+
T Consensus 242 vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s 281 (553)
T KOG4242|consen 242 VLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTS 281 (553)
T ss_pred hhhcccccccccchhhcccccccccccccchhhhccCCCC
Confidence 34455554433321 11222233445666666665543
No 98
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=23.33 E-value=15 Score=31.32 Aligned_cols=8 Identities=0% Similarity=0.152 Sum_probs=3.3
Q ss_pred hhheehhh
Q 005711 652 CLSFFVSF 659 (681)
Q Consensus 652 ~~~~~~~~ 659 (681)
++|++.|+
T Consensus 70 i~gv~aGv 77 (122)
T PF01102_consen 70 IFGVMAGV 77 (122)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 33444444
No 99
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=22.26 E-value=46 Score=29.49 Aligned_cols=10 Identities=20% Similarity=0.195 Sum_probs=3.8
Q ss_pred hheehhhhhh
Q 005711 653 LSFFVSFYLG 662 (681)
Q Consensus 653 ~~~~~~~~~~ 662 (681)
+|+.++++++
T Consensus 56 VGVGg~ill~ 65 (154)
T PF04478_consen 56 VGVGGPILLG 65 (154)
T ss_pred ecccHHHHHH
Confidence 3433333333
No 100
>PHA03265 envelope glycoprotein D; Provisional
Probab=20.41 E-value=60 Score=32.83 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=14.2
Q ss_pred heehhhhhhhhhhhccccccceee
Q 005711 654 SFFVSFYLGVVALFCSARTRRYIL 677 (681)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~ 677 (681)
+++-.+++|+++++|++|+|.-+.
T Consensus 357 ~i~glv~vg~il~~~~rr~k~~~k 380 (402)
T PHA03265 357 GIAGLVLVGVILYVCLRRKKELKK 380 (402)
T ss_pred chhhhhhhhHHHHHHhhhhhhhhh
Confidence 333345667777777766664443
Done!