Query 005711
Match_columns 681
No_of_seqs 708 out of 5267
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 05:17:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005711.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005711hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 6.2E-83 2.1E-87 737.2 48.0 580 40-627 10-751 (768)
2 3rgz_A Protein brassinosteroid 100.0 3.2E-64 1.1E-68 581.1 37.0 505 83-594 127-741 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.9E-57 6.6E-62 519.7 48.2 534 81-619 24-626 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 8.4E-56 2.9E-60 506.1 44.7 511 82-598 49-627 (680)
5 3t6q_A CD180 antigen; protein- 100.0 5.5E-56 1.9E-60 500.9 39.9 484 107-598 34-565 (606)
6 3j0a_A TOLL-like receptor 5; m 100.0 2.6E-55 8.7E-60 512.0 41.9 533 70-626 14-590 (844)
7 4eco_A Uncharacterized protein 100.0 7.3E-57 2.5E-61 508.0 25.4 506 41-594 29-601 (636)
8 3vq2_A TLR4, TOLL-like recepto 100.0 5.9E-55 2E-59 492.4 39.6 502 81-599 31-564 (606)
9 3t6q_A CD180 antigen; protein- 100.0 8.3E-54 2.8E-58 483.1 37.9 485 81-573 32-564 (606)
10 4ecn_A Leucine-rich repeat pro 100.0 9.3E-55 3.2E-59 498.4 30.2 499 40-594 267-865 (876)
11 3vq2_A TLR4, TOLL-like recepto 100.0 9.9E-53 3.4E-57 474.3 39.9 518 86-620 15-563 (606)
12 3j0a_A TOLL-like receptor 5; m 100.0 4.1E-51 1.4E-55 476.5 44.6 514 87-620 9-565 (844)
13 2z81_A CD282 antigen, TOLL-lik 100.0 2E-50 6.7E-55 450.1 32.4 483 69-598 3-515 (549)
14 2z63_A TOLL-like receptor 4, v 100.0 8.2E-50 2.8E-54 447.2 34.6 490 81-600 27-538 (570)
15 4eco_A Uncharacterized protein 100.0 1.2E-49 4.2E-54 449.0 20.3 469 106-619 81-604 (636)
16 2z63_A TOLL-like receptor 4, v 100.0 7.6E-47 2.6E-51 423.2 39.4 490 98-618 22-534 (570)
17 2z7x_B TOLL-like receptor 1, v 100.0 3.5E-48 1.2E-52 428.8 25.7 456 85-598 3-486 (520)
18 2z81_A CD282 antigen, TOLL-lik 100.0 2E-46 6.7E-51 417.7 31.2 482 62-573 4-514 (549)
19 2z7x_B TOLL-like receptor 1, v 100.0 5.8E-47 2E-51 419.0 26.4 449 109-617 3-483 (520)
20 4g8a_A TOLL-like receptor 4; l 100.0 3.8E-45 1.3E-49 414.8 36.1 503 82-598 52-585 (635)
21 4ecn_A Leucine-rich repeat pro 100.0 5.4E-46 1.9E-50 425.9 28.2 452 106-596 323-843 (876)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3E-45 1E-49 408.7 26.8 458 85-600 34-517 (562)
23 4g8a_A TOLL-like receptor 4; l 100.0 7E-41 2.4E-45 379.7 40.0 505 97-617 45-582 (635)
24 1jl5_A Outer protein YOPM; leu 100.0 1E-42 3.6E-47 375.5 22.5 400 102-594 7-410 (454)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 8.1E-42 2.8E-46 381.0 26.1 437 81-573 51-514 (562)
26 1jl5_A Outer protein YOPM; leu 100.0 1.1E-41 3.9E-46 367.4 21.4 421 82-597 11-433 (454)
27 1ogq_A PGIP-2, polygalacturona 100.0 8E-41 2.7E-45 343.7 21.6 291 39-383 3-302 (313)
28 3v47_A TOLL-like receptor 5B a 100.0 2.4E-39 8.1E-44 351.9 33.7 368 106-510 30-413 (455)
29 3v47_A TOLL-like receptor 5B a 100.0 4.1E-40 1.4E-44 357.9 27.3 378 183-598 13-413 (455)
30 3bz5_A Internalin-J, INLJ; leu 100.0 3.9E-38 1.3E-42 340.1 32.6 375 95-564 31-407 (457)
31 3bz5_A Internalin-J, INLJ; leu 100.0 1.6E-37 5.5E-42 335.3 29.7 353 82-530 42-395 (457)
32 2id5_A Lingo-1, leucine rich r 100.0 1.3E-36 4.6E-41 332.1 26.2 326 274-619 33-360 (477)
33 1o6v_A Internalin A; bacterial 100.0 5E-35 1.7E-39 318.2 35.0 344 82-482 46-389 (466)
34 1o6v_A Internalin A; bacterial 100.0 8.2E-35 2.8E-39 316.6 34.5 347 104-507 44-390 (466)
35 2id5_A Lingo-1, leucine rich r 100.0 4.3E-35 1.5E-39 320.1 26.2 252 227-481 34-285 (477)
36 3o6n_A APL1; leucine-rich repe 100.0 8.4E-34 2.9E-38 301.4 28.4 332 248-617 44-376 (390)
37 1ogq_A PGIP-2, polygalacturona 100.0 1.4E-34 4.6E-39 297.3 19.2 257 325-624 51-312 (313)
38 3oja_B Anopheles plasmodium-re 100.0 1.2E-33 4.1E-38 316.7 28.1 333 248-619 50-384 (597)
39 3o6n_A APL1; leucine-rich repe 100.0 2.7E-33 9.1E-38 297.6 28.9 350 61-459 3-354 (390)
40 3oja_B Anopheles plasmodium-re 100.0 8.9E-33 3E-37 309.7 30.2 312 104-459 49-360 (597)
41 4fmz_A Internalin; leucine ric 100.0 1.2E-31 4.2E-36 280.1 29.5 305 246-593 41-346 (347)
42 4fmz_A Internalin; leucine ric 100.0 3.3E-31 1.1E-35 276.9 29.2 305 104-481 42-346 (347)
43 4fcg_A Uncharacterized protein 100.0 7.5E-33 2.6E-37 286.0 15.0 276 39-360 24-313 (328)
44 1z7x_W Ribonuclease inhibitor; 100.0 4E-34 1.4E-38 311.2 0.2 280 181-482 86-412 (461)
45 1z7x_W Ribonuclease inhibitor; 100.0 3.7E-34 1.3E-38 311.4 -2.3 252 325-593 143-440 (461)
46 1xku_A Decorin; proteoglycan, 100.0 5.9E-30 2E-34 265.3 28.3 290 250-591 32-330 (330)
47 1xku_A Decorin; proteoglycan, 100.0 1.3E-29 4.3E-34 262.8 28.9 295 107-455 32-330 (330)
48 2ft3_A Biglycan; proteoglycan, 100.0 6.5E-30 2.2E-34 265.2 26.0 288 107-455 34-331 (332)
49 2ft3_A Biglycan; proteoglycan, 100.0 4.9E-30 1.7E-34 266.1 24.7 288 205-503 34-331 (332)
50 3ogk_B Coronatine-insensitive 100.0 5.6E-33 1.9E-37 312.1 -3.3 409 68-504 40-500 (592)
51 2z80_A TOLL-like receptor 2, v 100.0 2.6E-29 8.7E-34 263.0 18.0 285 66-389 26-318 (353)
52 3ogk_B Coronatine-insensitive 100.0 2.3E-31 7.7E-36 299.0 1.3 347 226-590 165-548 (592)
53 2z80_A TOLL-like receptor 2, v 100.0 5.4E-29 1.9E-33 260.5 15.4 258 325-597 53-318 (353)
54 2z66_A Variable lymphocyte rec 100.0 6.6E-28 2.3E-32 247.0 21.9 249 328-597 11-265 (306)
55 3zyi_A Leucine-rich repeat-con 100.0 4.9E-27 1.7E-31 254.2 25.9 251 326-598 56-308 (452)
56 3zyj_A Leucine-rich repeat-con 100.0 6E-27 2.1E-31 252.6 25.9 251 326-598 45-297 (440)
57 2z66_A Variable lymphocyte rec 100.0 2.4E-27 8.1E-32 242.9 21.0 247 209-459 12-263 (306)
58 4fcg_A Uncharacterized protein 100.0 1.9E-27 6.5E-32 245.5 19.4 232 325-593 82-314 (328)
59 1wwl_A Monocyte differentiatio 99.9 2.9E-28 9.9E-33 250.2 10.7 249 293-594 39-310 (312)
60 1ozn_A Reticulon 4 receptor; N 99.9 1.9E-27 6.5E-32 241.0 15.4 233 349-599 33-267 (285)
61 3g06_A SSPH2 (leucine-rich rep 99.9 1.2E-26 4.1E-31 257.6 20.5 288 61-394 12-306 (622)
62 1ozn_A Reticulon 4 receptor; N 99.9 3.4E-26 1.2E-30 231.7 21.5 225 252-482 14-239 (285)
63 3o53_A Protein LRIM1, AGAP0063 99.9 7.6E-28 2.6E-32 247.6 8.8 242 325-597 35-280 (317)
64 1wwl_A Monocyte differentiatio 99.9 4E-28 1.4E-32 249.1 5.0 248 325-615 44-309 (312)
65 2p1m_B Transport inhibitor res 99.9 1.3E-29 4.4E-34 284.9 -7.1 460 68-591 33-542 (594)
66 3o53_A Protein LRIM1, AGAP0063 99.9 1.1E-27 3.7E-32 246.5 7.0 262 112-413 16-280 (317)
67 3zyi_A Leucine-rich repeat-con 99.9 4.1E-25 1.4E-29 239.0 24.2 226 227-481 77-303 (452)
68 3oja_A Leucine-rich immune mol 99.9 1.9E-26 6.5E-31 251.0 13.2 234 325-588 35-270 (487)
69 3zyj_A Leucine-rich repeat-con 99.9 5.9E-25 2E-29 236.9 24.4 246 207-481 46-292 (440)
70 3g06_A SSPH2 (leucine-rich rep 99.9 2.6E-24 8.7E-29 238.9 27.6 261 250-597 41-301 (622)
71 2p1m_B Transport inhibitor res 99.9 3.3E-28 1.1E-32 273.4 -5.2 232 342-593 259-519 (594)
72 2z62_A TOLL-like receptor 4, v 99.9 1.7E-24 5.7E-29 218.2 21.9 227 329-598 12-242 (276)
73 3oja_A Leucine-rich immune mol 99.9 5.7E-26 1.9E-30 247.2 11.3 233 107-379 35-269 (487)
74 2o6q_A Variable lymphocyte rec 99.9 2.8E-24 9.6E-29 215.6 21.1 219 67-312 2-220 (270)
75 2z62_A TOLL-like receptor 4, v 99.9 1.7E-23 5.7E-28 210.8 20.7 207 325-573 29-241 (276)
76 3rfs_A Internalin B, repeat mo 99.9 6.8E-24 2.3E-28 213.0 16.0 207 325-535 42-248 (272)
77 2o6q_A Variable lymphocyte rec 99.9 7.3E-23 2.5E-27 205.3 22.4 184 397-597 38-222 (270)
78 1p9a_G Platelet glycoprotein I 99.9 2E-22 7E-27 203.8 20.4 206 344-597 6-212 (290)
79 2ast_B S-phase kinase-associat 99.9 1.9E-24 6.6E-29 224.4 4.4 214 67-308 34-258 (336)
80 4glp_A Monocyte differentiatio 99.9 1.1E-22 3.6E-27 208.5 14.4 203 348-593 91-307 (310)
81 3rfs_A Internalin B, repeat mo 99.9 3E-22 1E-26 201.0 17.2 208 271-492 39-246 (272)
82 3goz_A Leucine-rich repeat-con 99.9 4.7E-24 1.6E-28 223.6 4.1 258 302-595 3-299 (362)
83 1p9a_G Platelet glycoprotein I 99.9 1.4E-21 4.6E-26 197.8 20.8 203 293-505 6-208 (290)
84 2ca6_A RAN GTPase-activating p 99.9 4.2E-24 1.4E-28 226.2 1.9 190 394-596 92-319 (386)
85 2ast_B S-phase kinase-associat 99.9 6.5E-23 2.2E-27 212.8 8.0 228 325-598 71-311 (336)
86 3goz_A Leucine-rich repeat-con 99.9 6.3E-23 2.2E-27 215.0 7.9 258 230-507 3-299 (362)
87 3m19_A Variable lymphocyte rec 99.9 2.4E-21 8.1E-26 192.0 17.6 192 68-288 3-194 (251)
88 4glp_A Monocyte differentiatio 99.9 2.8E-22 9.5E-27 205.4 10.9 201 325-570 92-308 (310)
89 2ca6_A RAN GTPase-activating p 99.9 4.3E-23 1.5E-27 218.5 4.9 241 266-506 25-317 (386)
90 2xwt_C Thyrotropin receptor; s 99.9 3.2E-21 1.1E-25 189.6 15.7 205 339-590 25-236 (239)
91 2xwt_C Thyrotropin receptor; s 99.8 6.8E-21 2.3E-25 187.3 15.2 196 325-543 32-236 (239)
92 1h6u_A Internalin H; cell adhe 99.8 1.2E-20 4.2E-25 192.7 17.6 123 325-481 42-164 (308)
93 1h6u_A Internalin H; cell adhe 99.8 2E-20 7E-25 191.0 18.1 193 346-594 39-231 (308)
94 3m19_A Variable lymphocyte rec 99.8 4.2E-20 1.4E-24 183.0 19.2 178 298-505 15-192 (251)
95 4ay9_X Follicle-stimulating ho 99.8 1.2E-19 4E-24 189.1 19.8 239 328-590 13-256 (350)
96 2o6s_A Variable lymphocyte rec 99.8 9.8E-20 3.3E-24 174.8 17.0 181 327-534 10-190 (208)
97 2o6s_A Variable lymphocyte rec 99.8 3.9E-20 1.3E-24 177.7 12.3 181 70-274 7-190 (208)
98 3cvr_A Invasion plasmid antige 99.8 4.7E-20 1.6E-24 202.1 14.4 198 71-321 49-254 (571)
99 4ay9_X Follicle-stimulating ho 99.8 4E-19 1.4E-23 185.1 18.0 240 301-567 13-257 (350)
100 3cvr_A Invasion plasmid antige 99.8 2.1E-19 7.1E-24 197.0 16.0 188 325-579 60-253 (571)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 3.6E-19 1.2E-23 172.2 11.8 158 423-600 14-173 (220)
102 2v9t_B SLIT homolog 2 protein 99.8 9.4E-19 3.2E-23 169.2 12.3 155 423-598 14-170 (220)
103 3e6j_A Variable lymphocyte rec 99.8 5.7E-18 2E-22 164.9 15.7 161 63-241 12-175 (229)
104 1h6t_A Internalin B; cell adhe 99.7 1.4E-17 4.6E-22 168.5 16.7 186 353-594 29-214 (291)
105 3e6j_A Variable lymphocyte rec 99.7 1.6E-17 5.5E-22 161.7 15.7 155 422-597 21-176 (229)
106 1m9s_A Internalin B; cell inva 99.7 1.5E-17 5E-22 184.5 15.7 172 295-483 41-212 (605)
107 2v9t_B SLIT homolog 2 protein 99.7 3.6E-17 1.2E-21 158.1 16.3 152 327-481 14-165 (220)
108 2v70_A SLIT-2, SLIT homolog 2 99.7 3.3E-17 1.1E-21 158.4 16.0 153 328-483 15-168 (220)
109 4b8c_D Glucose-repressible alc 99.7 7.2E-19 2.5E-23 199.9 4.6 215 41-290 131-358 (727)
110 2xot_A Amphoterin-induced prot 99.7 1.8E-17 6.2E-22 173.2 14.7 175 301-481 22-202 (361)
111 1h6t_A Internalin B; cell adhe 99.7 1.7E-17 5.9E-22 167.8 13.8 190 326-571 26-215 (291)
112 2xot_A Amphoterin-induced prot 99.7 4.1E-17 1.4E-21 170.5 15.9 178 326-506 20-203 (361)
113 1m9s_A Internalin B; cell inva 99.7 1.7E-17 5.8E-22 184.0 13.5 190 298-506 22-211 (605)
114 1dce_A Protein (RAB geranylger 99.7 7.4E-20 2.5E-24 201.7 -6.5 201 346-586 347-566 (567)
115 1dce_A Protein (RAB geranylger 99.7 4.7E-20 1.6E-24 203.3 -8.4 217 127-379 346-567 (567)
116 1xeu_A Internalin C; cellular 99.7 2.7E-17 9.2E-22 163.6 10.0 170 395-595 18-187 (263)
117 1w8a_A SLIT protein; signaling 99.7 3.5E-17 1.2E-21 154.6 10.2 154 447-620 11-167 (192)
118 4ezg_A Putative uncharacterize 99.7 4.4E-17 1.5E-21 154.7 10.7 155 417-594 41-195 (197)
119 4ezg_A Putative uncharacterize 99.7 2.2E-16 7.7E-21 149.8 13.8 107 345-479 41-147 (197)
120 4b8c_D Glucose-repressible alc 99.7 3.2E-17 1.1E-21 186.4 6.0 142 364-509 216-358 (727)
121 1xeu_A Internalin C; cellular 99.7 1.8E-16 6.1E-21 157.7 10.4 145 325-482 42-186 (263)
122 1w8a_A SLIT protein; signaling 99.6 6E-16 2.1E-20 146.1 11.7 155 423-598 11-167 (192)
123 3sb4_A Hypothetical leucine ri 99.6 6E-16 2E-20 159.6 9.7 260 203-474 48-327 (329)
124 3sb4_A Hypothetical leucine ri 99.6 7.8E-16 2.7E-20 158.7 8.6 289 129-451 24-328 (329)
125 2wfh_A SLIT homolog 2 protein 99.6 2.1E-15 7.2E-20 142.3 10.3 130 448-598 14-144 (193)
126 2ell_A Acidic leucine-rich nuc 99.6 2.1E-15 7.1E-20 139.1 9.2 68 526-593 88-160 (168)
127 2ell_A Acidic leucine-rich nuc 99.6 2.2E-15 7.6E-20 139.0 9.3 134 82-218 24-161 (168)
128 2je0_A Acidic leucine-rich nuc 99.6 1.8E-15 6E-20 136.6 7.8 128 82-212 17-148 (149)
129 2o6r_A Variable lymphocyte rec 99.6 2.4E-14 8.1E-19 133.2 12.9 131 447-597 10-141 (177)
130 2je0_A Acidic leucine-rich nuc 99.5 1.3E-14 4.4E-19 130.8 10.1 127 348-500 17-148 (149)
131 2o6r_A Variable lymphocyte rec 99.5 1.7E-13 5.8E-18 127.4 14.6 131 326-459 9-139 (177)
132 2wfh_A SLIT homolog 2 protein 99.5 1.6E-13 5.5E-18 129.3 13.5 125 328-456 14-138 (193)
133 4fs7_A Uncharacterized protein 99.5 3.6E-12 1.2E-16 134.7 23.4 329 100-497 65-393 (394)
134 1ds9_A Outer arm dynein; leuci 99.5 4.3E-16 1.5E-20 148.0 -7.6 150 420-593 18-185 (198)
135 4fdw_A Leucine rich hypothetic 99.5 3E-12 1E-16 134.8 20.5 245 243-502 130-380 (401)
136 4fdw_A Leucine rich hypothetic 99.4 5.3E-12 1.8E-16 132.9 21.1 205 241-480 172-382 (401)
137 1a9n_A U2A', U2A'; complex (nu 99.4 2E-13 7E-18 126.7 9.0 132 441-594 16-154 (176)
138 4fs7_A Uncharacterized protein 99.4 8.5E-12 2.9E-16 131.8 22.6 318 118-502 59-376 (394)
139 1a9n_A U2A', U2A'; complex (nu 99.4 5.1E-13 1.7E-17 124.0 10.2 58 421-480 43-100 (176)
140 3g39_A Variable lymphocyte rec 99.4 7.4E-13 2.5E-17 122.0 11.0 84 514-597 35-119 (170)
141 1ds9_A Outer arm dynein; leuci 99.4 3.4E-15 1.2E-19 141.7 -6.0 128 325-457 19-153 (198)
142 2r9u_A Variable lymphocyte rec 99.4 1.9E-12 6.4E-17 119.7 11.0 107 471-597 15-122 (174)
143 3g39_A Variable lymphocyte rec 99.3 8.6E-12 3E-16 114.8 12.4 104 86-218 13-116 (170)
144 2r9u_A Variable lymphocyte rec 99.3 1.7E-11 6E-16 113.1 12.5 77 85-164 15-91 (174)
145 4gt6_A Cell surface protein; l 99.3 1.2E-09 4.2E-14 115.1 26.6 108 101-213 58-169 (394)
146 3un9_A NLR family member X1; l 99.2 4.9E-13 1.7E-17 139.4 -1.4 38 106-143 72-114 (372)
147 4gt6_A Cell surface protein; l 99.2 2.2E-09 7.7E-14 113.1 24.1 332 121-502 54-388 (394)
148 2ifg_A High affinity nerve gro 99.2 8E-11 2.7E-15 122.1 12.4 109 68-193 4-116 (347)
149 3un9_A NLR family member X1; l 99.2 1.4E-12 4.8E-17 135.9 -2.4 170 296-485 71-256 (372)
150 2ifg_A High affinity nerve gro 99.1 9.8E-11 3.3E-15 121.4 10.0 69 527-596 50-119 (347)
151 4h09_A Hypothetical leucine ri 98.8 5.7E-07 2E-11 94.1 24.0 108 367-477 235-342 (379)
152 2ra8_A Uncharacterized protein 98.8 2.8E-09 9.7E-14 110.0 5.2 63 248-310 251-320 (362)
153 4h09_A Hypothetical leucine ri 98.7 1.8E-06 6.3E-11 90.2 24.8 39 125-164 41-79 (379)
154 2ra8_A Uncharacterized protein 98.7 1.9E-08 6.6E-13 103.7 7.9 138 343-483 167-322 (362)
155 3rw6_A Nuclear RNA export fact 98.6 1.7E-09 5.9E-14 105.7 -2.6 80 127-210 167-257 (267)
156 1io0_A Tropomodulin; LRR prote 98.4 3.7E-08 1.3E-12 91.6 1.2 118 98-217 28-164 (185)
157 1io0_A Tropomodulin; LRR prote 98.2 3.5E-07 1.2E-11 84.9 2.4 120 342-481 30-164 (185)
158 3rw6_A Nuclear RNA export fact 98.1 6.4E-07 2.2E-11 87.5 2.5 66 530-597 167-237 (267)
159 3e4g_A ATP synthase subunit S, 97.9 4.2E-06 1.4E-10 75.7 2.6 35 181-215 115-150 (176)
160 3e4g_A ATP synthase subunit S, 97.7 2.1E-05 7.1E-10 71.1 3.7 34 445-478 115-149 (176)
161 3rfe_A Platelet glycoprotein I 97.0 0.001 3.6E-08 57.1 6.6 60 536-597 11-72 (130)
162 1pgv_A TMD-1, tropomodulin TMD 96.6 0.0012 4.1E-08 60.7 3.7 39 180-218 41-84 (197)
163 1pgv_A TMD-1, tropomodulin TMD 96.6 0.0016 5.6E-08 59.8 4.5 116 345-480 38-169 (197)
164 3rfe_A Platelet glycoprotein I 95.3 0.032 1.1E-06 47.6 6.7 54 208-261 12-67 (130)
165 2lz0_A Uncharacterized protein 43.5 27 0.00091 27.6 4.4 46 118-164 8-53 (100)
166 2lz0_A Uncharacterized protein 31.1 61 0.0021 25.5 4.6 40 341-381 13-52 (100)
167 2k1k_A Ephrin type-A receptor 23.7 15 0.00053 23.1 -0.2 8 653-660 18-25 (38)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6.2e-83 Score=737.25 Aligned_cols=580 Identities=34% Similarity=0.505 Sum_probs=480.8
Q ss_pred CHHhHHHHHHHHhcCCCCCCCCCCC-CCCCCCCCCceeecCCCCcEEEEEcCCCCCccc---cc----------------
Q 005711 40 NLEDKASLLLFKSLVQDPTQKLSSW-VGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQ---VH---------------- 99 (681)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~~~~~w-~~~~cc~w~gv~c~~~~~~v~~L~L~~~~l~g~---~~---------------- 99 (681)
..+|++||++||+++.||. .+++| .+.+||.|+||+|+ .+||++|+|+++.+.|. ++
T Consensus 10 ~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~ 86 (768)
T 3rgz_A 10 LYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSN 86 (768)
T ss_dssp HHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTT
T ss_pred CHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcC
Confidence 4467779999999999888 89999 57899999999998 68999999999999886 44
Q ss_pred -------ccccCCCCCCEEECCCCcCCccccc--cccCCCCCCEEEccCCCCCCcCCccc-cCCCCCCEeeCCCCCC---
Q 005711 100 -------PRLCKLSFLEFLVLSSNAFTGRIST--CFGGLSGLKTLDLSYNKFVGVVPDAI-MKLRNLRELILKGNPE--- 166 (681)
Q Consensus 100 -------~~l~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~~--- 166 (681)
..++++++|++|||++|.++|.+|. .++++++|++|+|++|.+.+.+|..+ .++++|++|++++|.+
T Consensus 87 ~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 166 (768)
T 3rgz_A 87 SHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA 166 (768)
T ss_dssp SCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEE
T ss_pred CCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCc
Confidence 4678889999999999999988888 88999999999999988887777654 5566666666665532
Q ss_pred ---------------------------------------------CCccCCchhccccCCccEEEccCCcCccccCcccc
Q 005711 167 ---------------------------------------------LGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLY 201 (681)
Q Consensus 167 ---------------------------------------------~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~ 201 (681)
+.+.+|. ++++ ++|++|++++|.+++.+|..++
T Consensus 167 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l-~~L~~L~Ls~n~l~~~~~~~l~ 244 (768)
T 3rgz_A 167 NVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDC-SALQHLDISGNKLSGDFSRAIS 244 (768)
T ss_dssp THHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTC-CSCCEEECCSSCCCSCHHHHTT
T ss_pred CChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccC-CCCCEEECcCCcCCCcccHHHh
Confidence 1122222 3333 4444444444444444444444
Q ss_pred CCCCCCEEEccCccCcccccC-cCCcccEEECCCCCCccccchhhccC-CCCCEEEccCCccccCCChhhcccCcccEEe
Q 005711 202 YLKSLKHLDLEKNNLTGNVHD-FYQSLLVLNLGSNRFSGTLPCFAASA-MSLTVLKLDNNSVVGGIPTCIASLQALTHLN 279 (681)
Q Consensus 202 ~l~~L~~L~L~~n~l~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 279 (681)
++++|++|++++|.+++.+|. .+.+|++|++++|.+++.+|..+... ++|++|++++|.+++.+|..++.+++|++|+
T Consensus 245 ~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 324 (768)
T 3rgz_A 245 TCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 324 (768)
T ss_dssp TCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEE
T ss_pred cCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEE
Confidence 445555555555544443333 23446666666666666777766654 7788888888888877888888888888888
Q ss_pred cCCCccccccCcc-ccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccC--CCCCCEEecc
Q 005711 280 LSHNHLNYEISPR-LVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITE--LKSLQALFLS 356 (681)
Q Consensus 280 L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~--l~~L~~L~L~ 356 (681)
+++|.+++.+|.. +..+++|++|++++|.+++.+|..+..+.. +|+.|++++|.+++.+|..+.. +++|++|+++
T Consensus 325 L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~--~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~ 402 (768)
T 3rgz_A 325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA--SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 402 (768)
T ss_dssp CCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTT--TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECC
T ss_pred CCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhc--CCcEEEccCCCcCCCcChhhhhcccCCccEEECC
Confidence 8888887777765 777888888888888888788877766542 6888888888888877777766 7889999999
Q ss_pred CCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceecc
Q 005711 357 NNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEI 436 (681)
Q Consensus 357 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 436 (681)
+|.+++.+|..++++++|++|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+
T Consensus 403 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 482 (768)
T 3rgz_A 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482 (768)
T ss_dssp SSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred CCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcC
Confidence 99999889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccCCCC------
Q 005711 437 PLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPD------ 510 (681)
Q Consensus 437 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~------ 510 (681)
|..+.++++|++|++++|++++.+|.+++.+++|++|++++|+++|.+|..+..+++|+.|++++|+++|.+|.
T Consensus 483 p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~ 562 (768)
T 3rgz_A 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTT
T ss_pred CHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998877663
Q ss_pred -----------------------------------------------------------------------CcccccCCc
Q 005711 511 -----------------------------------------------------------------------AVGMDLSDN 519 (681)
Q Consensus 511 -----------------------------------------------------------------------~~~L~Ls~N 519 (681)
.+.|||++|
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N 642 (768)
T 3rgz_A 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642 (768)
T ss_dssp TCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS
T ss_pred chhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCC
Confidence 235899999
Q ss_pred cccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcceeeCCC
Q 005711 520 LLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPW 598 (681)
Q Consensus 520 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 598 (681)
+++|.+|.+++++++|+.|+|++|+++|.+|. ++++++|+.|||++|+++|.+|..++.+++|++||+++|+++|.||.
T Consensus 643 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred cccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccc-cccCCCCCCCCCCCCCCCCC
Q 005711 599 KQGYQKFPG-AFAGNPNLCLESSHGECNRT 627 (681)
Q Consensus 599 ~~~~~~~~~-~~~gn~~lc~~~~~~~c~~~ 627 (681)
.+++.+++. +|.|||.+||.|.. .|...
T Consensus 723 ~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~ 751 (768)
T 3rgz_A 723 MGQFETFPPAKFLNNPGLCGYPLP-RCDPS 751 (768)
T ss_dssp SSSGGGSCGGGGCSCTEEESTTSC-CCCSC
T ss_pred chhhccCCHHHhcCCchhcCCCCc-CCCCC
Confidence 999999988 89999999999987 88644
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.2e-64 Score=581.06 Aligned_cols=505 Identities=33% Similarity=0.504 Sum_probs=442.6
Q ss_pred cEEEEEcCCCCCcccccccc-cCCCCCCEEECCCCcCCcccccc-------------------------ccCCCCCCEEE
Q 005711 83 HVVSINLTDTSLSGQVHPRL-CKLSFLEFLVLSSNAFTGRISTC-------------------------FGGLSGLKTLD 136 (681)
Q Consensus 83 ~v~~L~L~~~~l~g~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~-------------------------~~~l~~L~~L~ 136 (681)
+++.|+|++|.+.+.++..+ .++++|++||+++|.+++..|.. +.++++|++|+
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~ 206 (768)
T 3rgz_A 127 GLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLD 206 (768)
T ss_dssp TCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEE
T ss_pred CCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEE
Confidence 45666666666655555443 45555555555555554443322 26788888999
Q ss_pred ccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccC
Q 005711 137 LSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNL 216 (681)
Q Consensus 137 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 216 (681)
+++|.+++.+|. ++++++|++|++++| .+.+.+|..++++ ++|++|++++|.+.+.+|.. .+++|++|++++|.+
T Consensus 207 Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n-~l~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l 281 (768)
T 3rgz_A 207 VSSNNFSTGIPF-LGDCSALQHLDISGN-KLSGDFSRAISTC-TELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKF 281 (768)
T ss_dssp CCSSCCCSCCCB-CTTCCSCCEEECCSS-CCCSCHHHHTTTC-SSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEE
T ss_pred CcCCcCCCCCcc-cccCCCCCEEECcCC-cCCCcccHHHhcC-CCCCEEECCCCcccCccCcc--ccCCCCEEECcCCcc
Confidence 999999887777 999999999999999 5677889999999 89999999999999888865 899999999999999
Q ss_pred cccccCcC----CcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChh-hcccCcccEEecCCCccccccCc
Q 005711 217 TGNVHDFY----QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTC-IASLQALTHLNLSHNHLNYEISP 291 (681)
Q Consensus 217 ~~~~~~~~----~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~~~ 291 (681)
++.+|..+ .+|++|++++|++++.+|..++.+++|++|++++|.+.+.+|.. +..+++|++|++++|.+++.+|.
T Consensus 282 ~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~ 361 (768)
T 3rgz_A 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 361 (768)
T ss_dssp EESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCT
T ss_pred CCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccH
Confidence 98888764 66999999999999999999999999999999999999888876 89999999999999999999999
Q ss_pred cccCCC-CCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCC
Q 005711 292 RLVFFE-KLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGN 370 (681)
Q Consensus 292 ~l~~l~-~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 370 (681)
.+..++ +|++|++++|.++|.+|..+... ..++|+.|++++|.+++.+|..+..+++|++|++++|++++.+|..+++
T Consensus 362 ~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 440 (768)
T 3rgz_A 362 SLTNLSASLLTLDLSSNNFSGPILPNLCQN-PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS 440 (768)
T ss_dssp THHHHTTTCSEEECCSSEEEEECCTTTTCS-TTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred HHHhhhcCCcEEEccCCCcCCCcChhhhhc-ccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhc
Confidence 998887 99999999999999888877651 1237999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEE
Q 005711 371 LTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVD 450 (681)
Q Consensus 371 l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 450 (681)
+++|++|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|.+++.+++|++|+
T Consensus 441 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 520 (768)
T 3rgz_A 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccc-----------------------------------------
Q 005711 451 FSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLF----------------------------------------- 489 (681)
Q Consensus 451 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~----------------------------------------- 489 (681)
+++|++++.+|..+..+++|++|++++|++.|.+|..+.
T Consensus 521 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (768)
T 3rgz_A 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 600 (768)
T ss_dssp CCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCC
T ss_pred CCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999988876543
Q ss_pred -----------------------------cCCccceeecccCccccCCCCC-------cccccCCccccccCCccccccc
Q 005711 490 -----------------------------SFQAIQMMDFSTNKFMGFIPDA-------VGMDLSDNLLHGTIPKGLFQLQ 533 (681)
Q Consensus 490 -----------------------------~l~~L~~L~ls~n~~~~~~p~~-------~~L~Ls~N~l~g~ip~~l~~l~ 533 (681)
.+++|+.||+++|+++|.+|.. ..|||++|+++|.+|..+++++
T Consensus 601 ~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~ 680 (768)
T 3rgz_A 601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 680 (768)
T ss_dssp GGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred chhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCC
Confidence 2467889999999999998864 5799999999999999999999
Q ss_pred ccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCccee
Q 005711 534 GLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSG 594 (681)
Q Consensus 534 ~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 594 (681)
+|++|||++|+++|.+|. +..+++|++||+++|+++|.||.. ..+..+....+.+|+--|
T Consensus 681 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lc 741 (768)
T 3rgz_A 681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLC 741 (768)
T ss_dssp TCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEE
T ss_pred CCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhc
Confidence 999999999999999999 999999999999999999999975 445666777788887444
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.9e-57 Score=519.68 Aligned_cols=534 Identities=22% Similarity=0.219 Sum_probs=429.8
Q ss_pred CCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEee
Q 005711 81 TGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELI 160 (681)
Q Consensus 81 ~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 160 (681)
+.++++|+++++.+.+..+..+.++++|++|++++|.+++..|..|+++++|++|+|++|.+++..+.+|+++++|++|+
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 35899999999999988778899999999999999999999999999999999999999999966666899999999999
Q ss_pred CCCCCCCCccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcC-----CcccEEECCCC
Q 005711 161 LKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFY-----QSLLVLNLGSN 235 (681)
Q Consensus 161 L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~-----~~L~~L~L~~n 235 (681)
+++|+ +.+..|..++++ ++|++|++++|.+++..|..++++++|++|++++|.+++..+..+ .+|++|++++|
T Consensus 104 L~~n~-l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 104 LMSNS-IQKIKNNPFVKQ-KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp CCSSC-CCCCCSCTTTTC-TTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred CCCCc-cCccChhHcccc-CCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC
Confidence 99994 566667788998 899999999999998888999999999999999999998776532 56999999999
Q ss_pred CCccccchhhccC---------------------------CCCCEEEccCCccccCCChhhcccCc--ccEEecCCCccc
Q 005711 236 RFSGTLPCFAASA---------------------------MSLTVLKLDNNSVVGGIPTCIASLQA--LTHLNLSHNHLN 286 (681)
Q Consensus 236 ~l~~~~~~~~~~~---------------------------~~L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~L~~n~l~ 286 (681)
.+++..|..+..+ ++|+.|++++|.+.+..|.++..++. |++|++++|.++
T Consensus 182 ~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~ 261 (680)
T 1ziw_A 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261 (680)
T ss_dssp CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC
T ss_pred cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC
Confidence 9998877766544 56788888888888888888887765 999999999998
Q ss_pred cccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcC-----CCcc----cccCCCCCCEEeccC
Q 005711 287 YEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSG-----EIPL----KITELKSLQALFLSN 357 (681)
Q Consensus 287 ~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~-----~~p~----~l~~l~~L~~L~L~~ 357 (681)
+..+..+..+++|++|++++|.+++..|..+..+. +|+.|++++|...+ .+|. .+..+++|++|++++
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~---~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~ 338 (680)
T 1ziw_A 262 VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF---NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338 (680)
T ss_dssp EECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCT---TCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCS
T ss_pred ccCcccccCcccccEeeCCCCccCccChhhhcCCC---CccEEeccchhhhcccccccccccChhhcccCCCCCEEECCC
Confidence 88888889999999999999999888887777766 78888888776553 2332 567788889999999
Q ss_pred CccccccccccCCCCCCCEEEccCCcCccc-c-Cccccc--CCCcceeecccccccccCccccCCCCCccEEEcccCcce
Q 005711 358 NLLIGEIPARIGNLTYLQVIDLSHNMLSGS-I-PLNIVG--CFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQIS 433 (681)
Q Consensus 358 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~-p~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 433 (681)
|.+.+..+..+.++++|++|++++|.+.+. + +..+.. .++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 339 n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 418 (680)
T 1ziw_A 339 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG 418 (680)
T ss_dssp CCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCE
T ss_pred CccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCc
Confidence 988888888888888888888888875432 2 222322 257888888888888888888888888888888888888
Q ss_pred eccc-cccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCc--ccCCcccccCCccceeecccCccccCCCC
Q 005711 434 GEIP-LTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLS--GNLPNWLFSFQAIQMMDFSTNKFMGFIPD 510 (681)
Q Consensus 434 ~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~ls~n~~~~~~p~ 510 (681)
+.+| ..+.++++|++|++++|++.+..+..+..+++|++|++++|.+. +.+|..+..+++|+.|++++|++++..|.
T Consensus 419 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~ 498 (680)
T 1ziw_A 419 QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498 (680)
T ss_dssp EECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChh
Confidence 7665 67788888888888888888777777888888888888888876 46777788888888888888887765443
Q ss_pred -------CcccccCCccccccCC--------cccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCc
Q 005711 511 -------AVGMDLSDNLLHGTIP--------KGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPG 574 (681)
Q Consensus 511 -------~~~L~Ls~N~l~g~ip--------~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~ 574 (681)
...|++++|++++..+ ..+.++++|++|+|++|+++...+. +.++++|+.|++++|++++..+.
T Consensus 499 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 578 (680)
T 1ziw_A 499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS 578 (680)
T ss_dssp TTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred hhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHh
Confidence 3568888888875321 2367788888888888888844444 77788888888888888876666
Q ss_pred cccCCCCCCeEecccCcceeeCCCCC--CCCCccc-cccCCCCCCCCC
Q 005711 575 NISSLQELTLLNLSYNSFSGFVPWKQ--GYQKFPG-AFAGNPNLCLES 619 (681)
Q Consensus 575 ~l~~l~~L~~L~ls~N~l~~~~p~~~--~~~~~~~-~~~gn~~lc~~~ 619 (681)
.|..+++|+.|++++|++++..|... .+..+.. .+.|||..|...
T Consensus 579 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 579 VFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp TTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred HhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 67888888888888888887655321 2334444 678888888543
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=8.4e-56 Score=506.12 Aligned_cols=511 Identities=21% Similarity=0.200 Sum_probs=447.9
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeC
Q 005711 82 GHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELIL 161 (681)
Q Consensus 82 ~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 161 (681)
.+++.|+++++.+.+..+..+.++++|++|+|++|.+++..+..|+++++|++|++++|++++..|..|+++++|++|++
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 128 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence 47889999999999888888999999999999999999766668999999999999999999877788999999999999
Q ss_pred CCCCCCCccCCchhccccCCccEEEccCCcCccccCcccc--CCCCCCEEEccCccCcccccCcC---------------
Q 005711 162 KGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLY--YLKSLKHLDLEKNNLTGNVHDFY--------------- 224 (681)
Q Consensus 162 ~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~~~~~~--------------- 224 (681)
++| .+.+..|..++++ ++|++|++++|.+++..+..+. .+++|++|++++|.+++..+..+
T Consensus 129 s~n-~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~ 206 (680)
T 1ziw_A 129 SHN-GLSSTKLGTQVQL-ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206 (680)
T ss_dssp CSS-CCSCCCCCSSSCC-TTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCC
T ss_pred CCC-cccccCchhhccc-ccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccc
Confidence 999 5567777888888 8999999999999877666554 56899999999999987766533
Q ss_pred ---------------CcccEEECCCCCCccccchhhccCCC--CCEEEccCCccccCCChhhcccCcccEEecCCCcccc
Q 005711 225 ---------------QSLLVLNLGSNRFSGTLPCFAASAMS--LTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNY 287 (681)
Q Consensus 225 ---------------~~L~~L~L~~n~l~~~~~~~~~~~~~--L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 287 (681)
.+|+.|++++|.+++..|..+..++. |++|++++|.+++..|..++.+++|++|++++|.+++
T Consensus 207 l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 286 (680)
T 1ziw_A 207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH 286 (680)
T ss_dssp CHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSE
T ss_pred cChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCc
Confidence 35788999999999988988888755 9999999999999888999999999999999999999
Q ss_pred ccCccccCCCCCcEEeccCCCccCC-----CCh----hhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCC
Q 005711 288 EISPRLVFFEKLLLLDLSFNDLSGP-----LPS----KIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNN 358 (681)
Q Consensus 288 ~~~~~l~~l~~L~~L~L~~n~l~~~-----~p~----~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 358 (681)
..|..+..+++|+.|++++|...+. +|. .+..+ ++|+.|++++|.+++..+..+..+++|++|++++|
T Consensus 287 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL---KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363 (680)
T ss_dssp ECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC---TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTC
T ss_pred cChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC---CCCCEEECCCCccCCCChhHhccccCCcEEECCCC
Confidence 9999999999999999998766542 332 34444 48999999999999988889999999999999999
Q ss_pred cccccc--ccccCC--CCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCc-cccCCCCCccEEEcccCcce
Q 005711 359 LLIGEI--PARIGN--LTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQ-PELDALDSLKILDISNNQIS 433 (681)
Q Consensus 359 ~l~~~~--~~~l~~--l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~ 433 (681)
.+.... ...+.. .++|+.|++++|.+++..|..+..+++|+.|++++|.+.+.++ ..+..+++|+.|++++|++.
T Consensus 364 ~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 443 (680)
T 1ziw_A 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443 (680)
T ss_dssp BSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEE
T ss_pred chhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcc
Confidence 864332 222332 3689999999999999999999999999999999999998776 67899999999999999999
Q ss_pred eccccccCCCCCCcEEECCCCcCC--CcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccC----
Q 005711 434 GEIPLTLAGLKSLEIVDFSSNNLS--GSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGF---- 507 (681)
Q Consensus 434 ~~~p~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~---- 507 (681)
+..+..+..+++|++|++++|.+. +.+|..+..+++|++|++++|++++..+..+..+++|+.|++++|++++.
T Consensus 444 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 523 (680)
T 1ziw_A 444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHA 523 (680)
T ss_dssp ECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTT
T ss_pred eeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhh
Confidence 988999999999999999999987 57888999999999999999999987778899999999999999998753
Q ss_pred -----------CCCCcccccCCccccccCCc-ccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCc
Q 005711 508 -----------IPDAVGMDLSDNLLHGTIPK-GLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPG 574 (681)
Q Consensus 508 -----------~p~~~~L~Ls~N~l~g~ip~-~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~ 574 (681)
.+....|+|++|+++ .+|. .+.++++|++|+|++|++++..+. +.++++|+.|++++|++++..|.
T Consensus 524 ~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~ 602 (680)
T 1ziw_A 524 NPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602 (680)
T ss_dssp STTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHH
T ss_pred ccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChh
Confidence 245578999999999 5654 689999999999999999976666 78899999999999999998888
Q ss_pred ccc-CCCCCCeEecccCcceeeCCC
Q 005711 575 NIS-SLQELTLLNLSYNSFSGFVPW 598 (681)
Q Consensus 575 ~l~-~l~~L~~L~ls~N~l~~~~p~ 598 (681)
.+. .+++|+.+++++|++.|.++.
T Consensus 603 ~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 603 VFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp HHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred HhcccccccCEEEccCCCcccCCcc
Confidence 787 789999999999999999874
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.5e-56 Score=500.86 Aligned_cols=484 Identities=20% Similarity=0.160 Sum_probs=324.5
Q ss_pred CCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEE
Q 005711 107 FLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLD 186 (681)
Q Consensus 107 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~ 186 (681)
.+++|++++|.+++..|..|+++++|++|+|++|++++..|.+|.++++|++|++++| .+.+..|..++++ ++|++|+
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l-~~L~~L~ 111 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETALSGP-KALKHLF 111 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCSEECTTTTSSC-TTCCEEE
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC-cccccChhhhccc-ccccEee
Confidence 3455555555555444445555555555555555555444555555555555555555 2334444444444 4555555
Q ss_pred ccCCcCccccCccccCCCCCCEEEccCccCcccc-cCc--CCcccEEECCCCCCccccchhhccCCCCC--EEEccCCcc
Q 005711 187 FSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNV-HDF--YQSLLVLNLGSNRFSGTLPCFAASAMSLT--VLKLDNNSV 261 (681)
Q Consensus 187 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-~~~--~~~L~~L~L~~n~l~~~~~~~~~~~~~L~--~L~L~~n~l 261 (681)
+++|.+++..|..++++++|++|++++|.+++.. +.. +.+|++|++++|.+++..+..++.+++|+ .|++++|.+
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence 5555555433444555555555555555554422 211 23355555555555544445555555555 555555555
Q ss_pred ccCCChhhcccCcccEEecCCCccc--------------------------cccCccccCCC--CCcEEeccCCCccCCC
Q 005711 262 VGGIPTCIASLQALTHLNLSHNHLN--------------------------YEISPRLVFFE--KLLLLDLSFNDLSGPL 313 (681)
Q Consensus 262 ~~~~p~~l~~l~~L~~L~L~~n~l~--------------------------~~~~~~l~~l~--~L~~L~L~~n~l~~~~ 313 (681)
.+..|..+.. .+|++|++++|... ...+..+..+. +|+.|++++|.+++..
T Consensus 192 ~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~ 270 (606)
T 3t6q_A 192 AGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270 (606)
T ss_dssp CEECTTTTTT-CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCC
T ss_pred CccChhHhhh-ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccC
Confidence 5444433322 34555555444310 00111122222 6778888888887666
Q ss_pred ChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcc-c
Q 005711 314 PSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLN-I 392 (681)
Q Consensus 314 p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~-~ 392 (681)
+..+..+. +|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|.. +
T Consensus 271 ~~~~~~l~---~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (606)
T 3t6q_A 271 SNTFHCFS---GLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346 (606)
T ss_dssp TTTTTTCT---TCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred HHHhcccc---CCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhh
Confidence 65566655 7888888888887 67777777888888888888887777777788888888888888877666554 6
Q ss_pred ccCCCcceeecccccccccC--ccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchh-hhhcCCC
Q 005711 393 VGCFQLLALIVNNNNLSGEI--QPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLND-AITKWTN 469 (681)
Q Consensus 393 ~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~ 469 (681)
..+++|++|++++|.+.+.. +..+..+++|+.|++++|.+.+..|..+..+++|++|++++|++++..+. .+..+++
T Consensus 347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 426 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL 426 (606)
T ss_dssp TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTT
T ss_pred hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCccc
Confidence 77788888888888887665 66677788888888888888877777788888888888888888766543 3777888
Q ss_pred CCEEEccCCcCcccCCcccccCCccceeecccCccccC----------CCCCcccccCCccccccCCcccccccccceee
Q 005711 470 LKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGF----------IPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLN 539 (681)
Q Consensus 470 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~----------~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ 539 (681)
|++|++++|.+.+..|..+..+++|+.|++++|++.+. .+..+.|++++|++++..|..+.++++|++|+
T Consensus 427 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 506 (606)
T 3t6q_A 427 LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD 506 (606)
T ss_dssp CCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEE
Confidence 88888888888777777778888888888888877652 23456788888888888888899999999999
Q ss_pred cCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcceeeCCC
Q 005711 540 LSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPW 598 (681)
Q Consensus 540 Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 598 (681)
|++|++++.+|. +.+++.| .|++++|++++.+|..+..+++|+.+++++|++.|.++.
T Consensus 507 Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 507 LSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp CCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred CCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 999999988887 8889999 999999999988888888899999999999999988873
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.6e-55 Score=511.97 Aligned_cols=533 Identities=21% Similarity=0.169 Sum_probs=445.5
Q ss_pred CCCCceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccc-cccccCCCCCCEEEccCCCCCCcCCc
Q 005711 70 TNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRI-STCFGGLSGLKTLDLSYNKFVGVVPD 148 (681)
Q Consensus 70 c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~p~ 148 (681)
+.|..|.+ .+.++++|+|++|.+.+..+..+.++++|++|+|++|.+.+.+ |..|+++++|++|+|++|.+.+..|.
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 45777776 5678999999999999988999999999999999999776665 88999999999999999999999999
Q ss_pred cccCCCCCCEeeCCCCCCCCccCCch--hccccCCccEEEccCCcCccccC-ccccCCCCCCEEEccCccCcccccCcC-
Q 005711 149 AIMKLRNLRELILKGNPELGGVFPGW--VGNFSMNLEKLDFSFNSFCGEIP-ESLYYLKSLKHLDLEKNNLTGNVHDFY- 224 (681)
Q Consensus 149 ~~~~l~~L~~L~L~~n~~~~~~~p~~--l~~l~~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~~- 224 (681)
+|+++++|++|++++| .+.+.+|.. +.++ ++|++|++++|.+++..+ ..++++++|++|++++|.+++..+..+
T Consensus 92 ~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L-~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~ 169 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFC-GLSDAVLKDGYFRNL-KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE 169 (844)
T ss_dssp SSCSCSSCCCEECTTC-CCSSCCSTTCCCSSC-SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH
T ss_pred HccCCcccCEeeCcCC-CCCcccccCcccccc-CCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcc
Confidence 9999999999999999 455555544 8888 899999999999987654 579999999999999999998877765
Q ss_pred ----CcccEEECCCCCCccccchhhccCCC------CCEEEccCCccccCCChhhccc---CcccEEecCCCc-------
Q 005711 225 ----QSLLVLNLGSNRFSGTLPCFAASAMS------LTVLKLDNNSVVGGIPTCIASL---QALTHLNLSHNH------- 284 (681)
Q Consensus 225 ----~~L~~L~L~~n~l~~~~~~~~~~~~~------L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~L~~n~------- 284 (681)
.+|+.|++++|.+.+..|..+..+++ |++|++++|.+++..+..+... .+++.+.+..+.
T Consensus 170 ~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~ 249 (844)
T 3j0a_A 170 PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF 249 (844)
T ss_dssp HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSC
T ss_pred cccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccc
Confidence 56899999999999988887776665 9999999999998888777543 578888887433
Q ss_pred --cccccCccccCC--CCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCcc
Q 005711 285 --LNYEISPRLVFF--EKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLL 360 (681)
Q Consensus 285 --l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l 360 (681)
+.+.....+..+ ++|+.|++++|.+.+..|..+..+. +|+.|++++|++++..|..+..+++|++|++++|.+
T Consensus 250 ~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~---~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l 326 (844)
T 3j0a_A 250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLK---DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326 (844)
T ss_dssp SSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCC---CCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCC
T ss_pred cccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCC---CCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCC
Confidence 222233334443 7899999999999988787777666 899999999999988888999999999999999999
Q ss_pred ccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceecccccc
Q 005711 361 IGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTL 440 (681)
Q Consensus 361 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~ 440 (681)
++..|..+.++++|++|++++|.+.+..+..+..+++|+.|++++|.+++. ..+++|+.|++++|+++ .+|..
T Consensus 327 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~- 399 (844)
T 3j0a_A 327 GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI- 399 (844)
T ss_dssp SCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC-
T ss_pred CccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc-
Confidence 988899999999999999999999988888899999999999999998853 33789999999999998 45543
Q ss_pred CCCCCCcEEECCCCcCCCc-chhhhhcCCCCCEEEccCCcCcccCCc-ccccCCccceeecccCccccC-----------
Q 005711 441 AGLKSLEIVDFSSNNLSGS-LNDAITKWTNLKYFSIARNKLSGNLPN-WLFSFQAIQMMDFSTNKFMGF----------- 507 (681)
Q Consensus 441 ~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~ls~n~~~~~----------- 507 (681)
..+++.+++++|++++. .+..+..+++|++|++++|++++..+. .+..+++|+.|++++|.+.+.
T Consensus 400 --~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 477 (844)
T 3j0a_A 400 --NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE 477 (844)
T ss_dssp --CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSS
T ss_pred --ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhc
Confidence 56899999999999864 234466899999999999999865443 455689999999999998632
Q ss_pred -CCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCCcCCCCCCCEEECCCCcCcccCCccccCCCCCCeEe
Q 005711 508 -IPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLN 586 (681)
Q Consensus 508 -~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 586 (681)
++....|||++|++++..|..+..+++|+.|+|++|++++.+|.... ++|+.||+++|++++.+|..+ .+|+.++
T Consensus 478 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~ 553 (844)
T 3j0a_A 478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPNPDVF---VSLSVLD 553 (844)
T ss_dssp CBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCCCSCCC---SSCCEEE
T ss_pred CcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCcCCCCChhHh---CCcCEEE
Confidence 24456899999999988888899999999999999999977666333 899999999999999999876 4789999
Q ss_pred cccCcceeeCCCCCCCCCccc-cccCCCCCCCCCCCCCCCC
Q 005711 587 LSYNSFSGFVPWKQGYQKFPG-AFAGNPNLCLESSHGECNR 626 (681)
Q Consensus 587 ls~N~l~~~~p~~~~~~~~~~-~~~gn~~lc~~~~~~~c~~ 626 (681)
+++|++.|.|+..+ |.. ...++..+||.+....|..
T Consensus 554 l~~Np~~C~c~~~~----f~~~~~~~~~~~~~~~~~~~C~~ 590 (844)
T 3j0a_A 554 ITHNKFICECELST----FINWLNHTNVTIAGPPADIYCVY 590 (844)
T ss_dssp EEEECCCCSSSCCS----HHHHHHHTTTTTCCCGGGCCCSS
T ss_pred ecCCCcccccccHH----HHHHHHhcCcccccccccCccCC
Confidence 99999999987433 222 2234556666666667753
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=7.3e-57 Score=507.97 Aligned_cols=506 Identities=18% Similarity=0.229 Sum_probs=248.0
Q ss_pred HHhHHHHHHHHhcCCCCCC--------CCCCC-CCCCCCCC---CceeecCCCCcEEEEEcCCCCCcccccccccCCCCC
Q 005711 41 LEDKASLLLFKSLVQDPTQ--------KLSSW-VGSNCTNW---TGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFL 108 (681)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~--------~~~~w-~~~~cc~w---~gv~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L 108 (681)
..|+.||.+++.++.++.- ...+| .+.+||.| .||+|+. .+||++|+|+++++.|.+|++++++++|
T Consensus 29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~~l~g~lp~~l~~L~~L 107 (636)
T 4eco_A 29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNS-NGRVTGLSLEGFGASGRVPDAIGQLTEL 107 (636)
T ss_dssp HHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECT-TCCEEEEECTTSCCEEEECGGGGGCTTC
T ss_pred HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcC-CCCEEEEEecCcccCCcCChHHhcCccc
Confidence 4677899999999875421 24589 56899999 9999984 4899999999999999999999999999
Q ss_pred CEEECCCCcC------Cc------cccccccCCCCCCEEEccCCCCCCcCCccccC-CCCCCEeeCCCCCCCCccCCchh
Q 005711 109 EFLVLSSNAF------TG------RISTCFGGLSGLKTLDLSYNKFVGVVPDAIMK-LRNLRELILKGNPELGGVFPGWV 175 (681)
Q Consensus 109 ~~L~Ls~n~l------~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~L~~n~~~~~~~p~~l 175 (681)
++|+|++|.+ .+ .+|... +..|+ +++++|.+.+.+|..+.. +..+.++++...+...
T Consensus 108 ~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~------- 177 (636)
T 4eco_A 108 EVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK------- 177 (636)
T ss_dssp CEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC-------
T ss_pred eEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcccccccc-------
Confidence 9999999976 22 334333 55677 888888888877776653 2223333333221100
Q ss_pred ccccCCccEEEcc--CCcCccccCccccCCCCCCEEEccCccCccc-ccCcCCcccEEECCCCCCccccchhhc--cCCC
Q 005711 176 GNFSMNLEKLDFS--FNSFCGEIPESLYYLKSLKHLDLEKNNLTGN-VHDFYQSLLVLNLGSNRFSGTLPCFAA--SAMS 250 (681)
Q Consensus 176 ~~l~~~L~~L~L~--~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~--~~~~ 250 (681)
... ..++.+.+. .|.++| +|.+++++++|++|++++|.+++. ++..+.. -..+...+.+|..++ ++++
T Consensus 178 ~~~-~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~-----~~~~~~~~~ip~~l~~~~l~~ 250 (636)
T 4eco_A 178 SSR-ITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN-----ENSEYAQQYKTEDLKWDNLKD 250 (636)
T ss_dssp CCC-CCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC-----TTSHHHHHHTTSCCCGGGCTT
T ss_pred ccc-cchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccc-----cccchhcccCchhhhhcccCC
Confidence 000 122222222 455665 666666666666666666666663 0000000 000000111333333 3344
Q ss_pred CCEEEccCCccccCCChhhcccCcccEEecCCCc-ccc-ccCccccCC------CCCcEEeccCCCccCCCCh--hhhhc
Q 005711 251 LTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNH-LNY-EISPRLVFF------EKLLLLDLSFNDLSGPLPS--KIAQT 320 (681)
Q Consensus 251 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l------~~L~~L~L~~n~l~~~~p~--~~~~~ 320 (681)
|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++.+ ++|++|++++|.++ .+|. .++.+
T Consensus 251 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l 329 (636)
T 4eco_A 251 LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKM 329 (636)
T ss_dssp CCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTC
T ss_pred CCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccC
Confidence 4444444444444444444444444444444443 333 333333332 34444444444443 3333 33333
Q ss_pred ccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCC-CCEEEccCCcCccccCcccccCC--C
Q 005711 321 TEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTY-LQVIDLSHNMLSGSIPLNIVGCF--Q 397 (681)
Q Consensus 321 ~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~Ls~n~l~~~~p~~~~~~~--~ 397 (681)
. +|+.|++++|+++|.+| .+..+++|++|++++|+++ .+|..+.++++ |++|++++|.++ .+|..+.... +
T Consensus 330 ~---~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~ 403 (636)
T 4eco_A 330 K---KLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSV 403 (636)
T ss_dssp T---TCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSC
T ss_pred C---CCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCc
Confidence 3 34444444444443344 3333444444444444443 33333444444 444444444443 3333333222 3
Q ss_pred cceeecccccccccCccccC-------CCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhh-hcC--
Q 005711 398 LLALIVNNNNLSGEIQPELD-------ALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAI-TKW-- 467 (681)
Q Consensus 398 L~~L~l~~n~l~~~~~~~~~-------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l-- 467 (681)
|+.|++++|.+.+.+|..+. .+++|+.|++++|.+++..+..+..+++|++|++++|+++ .+|... ...
T Consensus 404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~ 482 (636)
T 4eco_A 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENE 482 (636)
T ss_dssp EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTE
T ss_pred cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccc
Confidence 44444444444444443333 3344444444444444222222233444444444444444 222211 111
Q ss_pred -----CCCCEEEccCCcCcccCCcccc--cCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeec
Q 005711 468 -----TNLKYFSIARNKLSGNLPNWLF--SFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNL 540 (681)
Q Consensus 468 -----~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~L 540 (681)
++|++|++++|+++ .+|..+. .+++|+.|++++|+++ .+|..++++++|++|+|
T Consensus 483 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~------------------~ip~~~~~l~~L~~L~L 543 (636)
T 4eco_A 483 NFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFS------------------KFPTQPLNSSTLKGFGI 543 (636)
T ss_dssp ECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCS------------------SCCCGGGGCSSCCEEEC
T ss_pred cccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCC------------------CcChhhhcCCCCCEEEC
Confidence 14444444444444 3444443 4444444443333332 13444444444555544
Q ss_pred ------CCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCccee
Q 005711 541 ------SFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSG 594 (681)
Q Consensus 541 ------s~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 594 (681)
++|++.+.+|. +..+++|+.|++++|++ +.+|..+. ++|+.|++++|++.+
T Consensus 544 s~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp CSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred CCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence 33444545554 55555555555555555 34554433 455555555555543
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.9e-55 Score=492.41 Aligned_cols=502 Identities=22% Similarity=0.228 Sum_probs=402.2
Q ss_pred CCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEee
Q 005711 81 TGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELI 160 (681)
Q Consensus 81 ~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 160 (681)
..++++|+++++.+.+..+..+.++++|++|++++|.+++..|..|+++++|++|+|++|.+++..|.+|+++++|++|+
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 45799999999999988888999999999999999999998899999999999999999999988899999999999999
Q ss_pred CCCCCCCCccCCchhccccCCccEEEccCCcCcc-ccCccccCCCCCCEEEccCccCcccccCcCCc-------ccEEEC
Q 005711 161 LKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCG-EIPESLYYLKSLKHLDLEKNNLTGNVHDFYQS-------LLVLNL 232 (681)
Q Consensus 161 L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-------L~~L~L 232 (681)
+++| .+.+..+..++++ ++|++|++++|.+++ .+|..++++++|++|++++|.+++..+..+.. +++|++
T Consensus 111 L~~n-~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l 188 (606)
T 3vq2_A 111 AVET-KLASLESFPIGQL-ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM 188 (606)
T ss_dssp CTTS-CCCCSSSSCCTTC-TTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEEC
T ss_pred ccCC-ccccccccccCCC-CCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeec
Confidence 9999 4555566778888 899999999999986 67999999999999999999999988877654 348999
Q ss_pred CCCCCccccchhhccCCCCCEEEccCCccc-cCCChhhcccCcccEEecCCCccccc---------cCccccCCCCCcEE
Q 005711 233 GSNRFSGTLPCFAASAMSLTVLKLDNNSVV-GGIPTCIASLQALTHLNLSHNHLNYE---------ISPRLVFFEKLLLL 302 (681)
Q Consensus 233 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~---------~~~~l~~l~~L~~L 302 (681)
++|.+++..+..+.. .+|++|++++|.+. +..|..+.++++|+.+++..+.+.+. .+..+..+ .++.+
T Consensus 189 ~~n~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l-~l~~l 266 (606)
T 3vq2_A 189 SLNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV-TIDEF 266 (606)
T ss_dssp TTCCCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGS-EEEEE
T ss_pred cCCCcceeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhc-cHhhe
Confidence 999998665555544 48999999999887 46677888899998888754433221 11112222 35556
Q ss_pred ec-cCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccC
Q 005711 303 DL-SFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSH 381 (681)
Q Consensus 303 ~L-~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 381 (681)
++ ..+.+.+.+|. +..+. +|+.|++++|.+. .+| .+..+++|++|++++|.+ +.+| .+ .+++|++|++++
T Consensus 267 ~l~~~~~~~~~~~~-~~~l~---~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~ 337 (606)
T 3vq2_A 267 RLTYTNDFSDDIVK-FHCLA---NVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTM 337 (606)
T ss_dssp EECCCTTCCGGGGS-CGGGT---TCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEES
T ss_pred eccccccccccccc-cccCC---CCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccC
Confidence 66 55666666665 44444 7888888888876 455 677777888888888887 5666 34 778888888888
Q ss_pred CcCccccCcccccCCCcceeeccccccccc--CccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCc
Q 005711 382 NMLSGSIPLNIVGCFQLLALIVNNNNLSGE--IQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGS 459 (681)
Q Consensus 382 n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 459 (681)
|...+.+ .+..+++|+.|++++|.+++. ++..+..+++|+.|++++|.+.+ +|..+..+++|++|++++|++.+.
T Consensus 338 n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~ 414 (606)
T 3vq2_A 338 NKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRV 414 (606)
T ss_dssp CSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEEST
T ss_pred CcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCc
Confidence 8655444 455777888888888877765 36667777888888888888774 557777788888888888888776
Q ss_pred ch-hhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccC-C-------CCCcccccCCccccccCCcccc
Q 005711 460 LN-DAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGF-I-------PDAVGMDLSDNLLHGTIPKGLF 530 (681)
Q Consensus 460 ~~-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~-~-------p~~~~L~Ls~N~l~g~ip~~l~ 530 (681)
.+ ..+..+++|++|++++|.+.+..|..+..+++|+.|++++|++.+. + +..+.|++++|++++..|..+.
T Consensus 415 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 494 (606)
T 3vq2_A 415 TEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD 494 (606)
T ss_dssp TTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred cChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhc
Confidence 66 5677788888888888888877777777888888888888877652 2 3345688888888888889999
Q ss_pred cccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCC-CCCeEecccCcceeeCCCC
Q 005711 531 QLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQ-ELTLLNLSYNSFSGFVPWK 599 (681)
Q Consensus 531 ~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~~~~p~~ 599 (681)
++++|++|+|++|++++.+|. +.++++|+.||+++|+++ .+|..+..++ +|++|++++|++.|.++..
T Consensus 495 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 495 TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence 999999999999999998888 889999999999999999 6777788887 5999999999999988753
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.3e-54 Score=483.05 Aligned_cols=485 Identities=22% Similarity=0.230 Sum_probs=423.8
Q ss_pred CCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEee
Q 005711 81 TGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELI 160 (681)
Q Consensus 81 ~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 160 (681)
+..++.|+++++.+++..+..+.++++|++|+|++|.+++..|..|+++++|++|+|++|++++..|.+|+++++|++|+
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 35799999999999998889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCc---CCccc--EEECCCC
Q 005711 161 LKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDF---YQSLL--VLNLGSN 235 (681)
Q Consensus 161 L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~---~~~L~--~L~L~~n 235 (681)
+++|. +.+..|..++++ ++|++|++++|.+++..+..+..+++|++|++++|.+++..+.. +.+|+ .|++++|
T Consensus 112 L~~n~-i~~l~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 112 FIQTG-ISSIDFIPLHNQ-KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp CTTSC-CSCGGGSCCTTC-TTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred ccccC-cccCCcchhccC-CcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC
Confidence 99994 555556678888 89999999999999744445556999999999999999877654 44577 8999999
Q ss_pred CCccccchhhccCCCCCEEEccCCccc--------------------------cCCChhhcccC--cccEEecCCCcccc
Q 005711 236 RFSGTLPCFAASAMSLTVLKLDNNSVV--------------------------GGIPTCIASLQ--ALTHLNLSHNHLNY 287 (681)
Q Consensus 236 ~l~~~~~~~~~~~~~L~~L~L~~n~l~--------------------------~~~p~~l~~l~--~L~~L~L~~n~l~~ 287 (681)
.+++..|..+.. .+|++|++++|... ...+..+..+. +|++|++++|.+++
T Consensus 190 ~l~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~ 268 (606)
T 3t6q_A 190 DIAGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268 (606)
T ss_dssp CCCEECTTTTTT-CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSS
T ss_pred ccCccChhHhhh-ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCc
Confidence 999877766554 67899998887511 01112222222 78999999999998
Q ss_pred ccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccc
Q 005711 288 EISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPAR 367 (681)
Q Consensus 288 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~ 367 (681)
..+..+..+++|++|++++|.++ .+|..+..+. +|++|++++|.+++..|..+..+++|++|++++|.+.+.+|..
T Consensus 269 ~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~---~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 344 (606)
T 3t6q_A 269 ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLS---TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344 (606)
T ss_dssp CCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCT---TCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSS
T ss_pred cCHHHhccccCCCEEeccCCccC-CCChhhcccc---cCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchh
Confidence 88888999999999999999998 7787776665 8999999999999888889999999999999999998777654
Q ss_pred -cCCCCCCCEEEccCCcCcccc--CcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceecccc-ccCCC
Q 005711 368 -IGNLTYLQVIDLSHNMLSGSI--PLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPL-TLAGL 443 (681)
Q Consensus 368 -l~~l~~L~~L~Ls~n~l~~~~--p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l 443 (681)
+.++++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+. .+..+
T Consensus 345 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 424 (606)
T 3t6q_A 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL 424 (606)
T ss_dssp TTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTC
T ss_pred hhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCc
Confidence 889999999999999998766 77889999999999999999999899999999999999999999987654 48899
Q ss_pred CCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCccc---CCcccccCCccceeecccCccccCCCC-------Ccc
Q 005711 444 KSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGN---LPNWLFSFQAIQMMDFSTNKFMGFIPD-------AVG 513 (681)
Q Consensus 444 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~p~~~~~l~~L~~L~ls~n~~~~~~p~-------~~~ 513 (681)
++|++|++++|.+++..|..+..+++|++|++++|++.+. .+..+..+++|+.|++++|++++..|. ...
T Consensus 425 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 504 (606)
T 3t6q_A 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH 504 (606)
T ss_dssp TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCE
Confidence 9999999999999998899999999999999999999873 336788999999999999999876543 467
Q ss_pred cccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCC
Q 005711 514 MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIP 573 (681)
Q Consensus 514 L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p 573 (681)
|||++|++++.+|..+.++++| +|++++|++++.+|. +..+++|+.|++++|.+++..+
T Consensus 505 L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 505 VDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp EECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred EECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 9999999999999999999999 999999999988888 8889999999999999997655
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=9.3e-55 Score=498.36 Aligned_cols=499 Identities=19% Similarity=0.232 Sum_probs=307.7
Q ss_pred CHHhHHHHHHHHhcCCCCCCCCCCCC--C----CCC--CCC------------CceeecCCCCcEEEEEcCCCCCccccc
Q 005711 40 NLEDKASLLLFKSLVQDPTQKLSSWV--G----SNC--TNW------------TGVACNFQTGHVVSINLTDTSLSGQVH 99 (681)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~~~~~w~--~----~~c--c~w------------~gv~c~~~~~~v~~L~L~~~~l~g~~~ 99 (681)
..+|++||++||+++.+| +|. + .+| |.| .||+|+. .+||++|+|+++++.|.+|
T Consensus 267 ~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~ip 340 (876)
T 4ecn_A 267 YIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRVP 340 (876)
T ss_dssp HHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEEEC
T ss_pred chHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCcCc
Confidence 346777999999999776 783 2 245 999 9999984 7899999999999999999
Q ss_pred ccccCCCCCCEEEC-CCCcCCccccccccCCC-CCCE--------------EE-ccCCCCCCc-----------CCcccc
Q 005711 100 PRLCKLSFLEFLVL-SSNAFTGRISTCFGGLS-GLKT--------------LD-LSYNKFVGV-----------VPDAIM 151 (681)
Q Consensus 100 ~~l~~l~~L~~L~L-s~n~l~~~~~~~~~~l~-~L~~--------------L~-Ls~n~l~~~-----------~p~~~~ 151 (681)
+.+++|++|++|+| ++|.+.|..|..-.... .+.. ++ .....+.+. .+....
T Consensus 341 ~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~ 420 (876)
T 4ecn_A 341 DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKD 420 (876)
T ss_dssp GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCC
T ss_pred hHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccc
Confidence 99999999999999 88988877442211110 0000 00 000000000 011111
Q ss_pred CCCCCCEeeCCC--CCCCCccCCchhccccCCccEEEccCCcCcc-----------------ccCcccc--CCCCCCEEE
Q 005711 152 KLRNLRELILKG--NPELGGVFPGWVGNFSMNLEKLDFSFNSFCG-----------------EIPESLY--YLKSLKHLD 210 (681)
Q Consensus 152 ~l~~L~~L~L~~--n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~-----------------~~p~~l~--~l~~L~~L~ 210 (681)
....++.+.+.. | .+.+ +|..++++ ++|++|+|++|.+++ .+|..++ ++++|++|+
T Consensus 421 ~~l~l~~l~l~~~~N-~L~~-IP~~l~~L-~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~ 497 (876)
T 4ecn_A 421 SRISLKDTQIGNLTN-RITF-ISKAIQRL-TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497 (876)
T ss_dssp CCCCCCTTTTTCCSC-EEEE-ECGGGGGC-TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred cccchhhceeccccC-cccc-hhHHHhcC-CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEE
Confidence 222333333333 3 2333 66666666 666666666666665 3666666 777777777
Q ss_pred ccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCc-ccc-CCChhhcccC-------cccEEecC
Q 005711 211 LEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNS-VVG-GIPTCIASLQ-------ALTHLNLS 281 (681)
Q Consensus 211 L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~-~~p~~l~~l~-------~L~~L~L~ 281 (681)
+++|.+.+.+ |..+.++++|++|++++|+ +++ .+|..++.++ +|++|+++
T Consensus 498 Ls~N~l~~~i---------------------P~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls 556 (876)
T 4ecn_A 498 LYNCPNMTQL---------------------PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG 556 (876)
T ss_dssp EESCTTCCSC---------------------CGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECC
T ss_pred CcCCCCCccC---------------------hHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEee
Confidence 7666555443 3344444444444444443 443 3444333332 44444444
Q ss_pred CCccccccCc--cccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCC-CCEEeccCC
Q 005711 282 HNHLNYEISP--RLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKS-LQALFLSNN 358 (681)
Q Consensus 282 ~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~-L~~L~L~~n 358 (681)
+|.++ .+|. .+..+++|+.|++++|.++ .+| .+..+. +|+.|++++|.++ .+|..+..+++ |+.|++++|
T Consensus 557 ~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~---~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 557 YNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNV---KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp SSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTS---EESEEECCSSCCS-CCCTTSCEECTTCCEEECCSS
T ss_pred CCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCC---cceEEECcCCccc-cchHHHhhccccCCEEECcCC
Confidence 44444 4444 4444444555555554444 444 333322 4555555555554 44444555554 555555555
Q ss_pred ccccccccccCCCCC--CCEEEccCCcCccccCccc---c--cCCCcceeecccccccccCccc-cCCCCCccEEEcccC
Q 005711 359 LLIGEIPARIGNLTY--LQVIDLSHNMLSGSIPLNI---V--GCFQLLALIVNNNNLSGEIQPE-LDALDSLKILDISNN 430 (681)
Q Consensus 359 ~l~~~~~~~l~~l~~--L~~L~Ls~n~l~~~~p~~~---~--~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n 430 (681)
.++ .+|..+..++. |+.|++++|.+.+.+|... . .+++|+.|++++|.+.. +|.. +..+++|+.|++++|
T Consensus 630 ~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N 707 (876)
T 4ecn_A 630 KLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNN 707 (876)
T ss_dssp CCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSC
T ss_pred CCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCC
Confidence 554 44444444332 5555555555554433211 1 22355666666666653 3332 346677777777777
Q ss_pred cceeccccccCC--------CCCCcEEECCCCcCCCcchhhhh--cCCCCCEEEccCCcCcccCCcccccCCccceeecc
Q 005711 431 QISGEIPLTLAG--------LKSLEIVDFSSNNLSGSLNDAIT--KWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFS 500 (681)
Q Consensus 431 ~l~~~~p~~~~~--------l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls 500 (681)
.++ .+|..+.. +++|++|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+++
T Consensus 708 ~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls 784 (876)
T 4ecn_A 708 LMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIR 784 (876)
T ss_dssp CCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECC
T ss_pred cCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECC
Confidence 776 44443332 237888888888888 6677776 78888888888888886 78888888888888888
Q ss_pred cCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCC
Q 005711 501 TNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSL 579 (681)
Q Consensus 501 ~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 579 (681)
+|+ ++++|++.+.+|..+.++++|+.|+|++|++ +.+|. +. ++|+.|||++|++....+..+...
T Consensus 785 ~N~-----------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~ 850 (876)
T 4ecn_A 785 HQR-----------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPY 850 (876)
T ss_dssp CCB-----------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHH
T ss_pred CCC-----------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHcccc
Confidence 886 6778888888898899999999999999998 57777 54 689999999998887766666665
Q ss_pred CCCCeEecccCccee
Q 005711 580 QELTLLNLSYNSFSG 594 (681)
Q Consensus 580 ~~L~~L~ls~N~l~~ 594 (681)
..+..+.+.+|++..
T Consensus 851 ~~~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 851 IEAGMYVLLYDKTQD 865 (876)
T ss_dssp HHTTCCEEECCTTSE
T ss_pred ccchheeecCCCccc
Confidence 566667777776543
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=9.9e-53 Score=474.25 Aligned_cols=518 Identities=20% Similarity=0.194 Sum_probs=437.9
Q ss_pred EEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCC
Q 005711 86 SINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNP 165 (681)
Q Consensus 86 ~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 165 (681)
.++.++.+++ .+|..+. +++++|++++|.+++..+..|+++++|++|++++|++++..|.+|.++++|++|++++|
T Consensus 15 ~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n- 90 (606)
T 3vq2_A 15 TYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN- 90 (606)
T ss_dssp EEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-
T ss_pred ceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-
Confidence 3556666665 4555554 78999999999999988889999999999999999999888999999999999999999
Q ss_pred CCCccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCcc-cccCcC---CcccEEECCCCCCcccc
Q 005711 166 ELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTG-NVHDFY---QSLLVLNLGSNRFSGTL 241 (681)
Q Consensus 166 ~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~~---~~L~~L~L~~n~l~~~~ 241 (681)
.+.+..|..++++ ++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..+ .+|++|++++|++++..
T Consensus 91 ~l~~~~p~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 91 PIQSFSPGSFSGL-TSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169 (606)
T ss_dssp CCCCCCTTSSTTC-TTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC
T ss_pred cccccChhhcCCc-ccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecC
Confidence 5667779999999 899999999999997777889999999999999999986 446544 56999999999999888
Q ss_pred chhhccCCCCC----EEEccCCccccCCChhhcccCcccEEecCCCccc-cccCccccCCCCCcEEeccCCCccCC----
Q 005711 242 PCFAASAMSLT----VLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLN-YEISPRLVFFEKLLLLDLSFNDLSGP---- 312 (681)
Q Consensus 242 ~~~~~~~~~L~----~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~---- 312 (681)
+..+..+++|+ +|++++|.+++..+..+... +|++|++++|.++ +..|..+..++.|+.+++..+.+.+.
T Consensus 170 ~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~ 248 (606)
T 3vq2_A 170 VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE 248 (606)
T ss_dssp TTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred hhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCccc
Confidence 88777766554 89999999987665555544 8999999999887 45677788999999988865544321
Q ss_pred --CChhhhhcccCCCccEEEc-cCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccC
Q 005711 313 --LPSKIAQTTEKAGLVLLDL-SHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIP 389 (681)
Q Consensus 313 --~p~~~~~~~~~~~L~~L~L-s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p 389 (681)
.+..+..+... .++.+++ ..+.+.+.+|. +..+++|+.|++++|.+. .+| .+..+++|++|++++|.+ +.+|
T Consensus 249 ~~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp 323 (606)
T 3vq2_A 249 IFEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP 323 (606)
T ss_dssp CCCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC
T ss_pred ccChHHhhhhhhc-cHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc
Confidence 11222222222 4777888 78888888887 889999999999999986 455 789999999999999999 6888
Q ss_pred cccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceec--cccccCCCCCCcEEECCCCcCCCcchhhhhcC
Q 005711 390 LNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGE--IPLTLAGLKSLEIVDFSSNNLSGSLNDAITKW 467 (681)
Q Consensus 390 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 467 (681)
.+ .+++|+.|++++|...+.+ .+..+++|+.|++++|.+++. +|..+..+++|++|++++|.+++ +|..+..+
T Consensus 324 -~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l 398 (606)
T 3vq2_A 324 -TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGL 398 (606)
T ss_dssp -CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTC
T ss_pred -cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCC
Confidence 45 9999999999999766555 567899999999999999876 47888999999999999999885 66888999
Q ss_pred CCCCEEEccCCcCcccCC-cccccCCccceeecccCccccCCC-------CCcccccCCccccc-cCCccccccccccee
Q 005711 468 TNLKYFSIARNKLSGNLP-NWLFSFQAIQMMDFSTNKFMGFIP-------DAVGMDLSDNLLHG-TIPKGLFQLQGLEYL 538 (681)
Q Consensus 468 ~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~ls~n~~~~~~p-------~~~~L~Ls~N~l~g-~ip~~l~~l~~L~~L 538 (681)
++|++|++++|++.+..| ..+..+++|+.|++++|++.+..| ..+.|++++|++++ .+|..+..+++|++|
T Consensus 399 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 478 (606)
T 3vq2_A 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL 478 (606)
T ss_dssp TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEE
Confidence 999999999999998877 688899999999999999987654 34689999999998 479999999999999
Q ss_pred ecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcceeeCCCC-CCCC-Cccc-cccCCCC
Q 005711 539 NLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWK-QGYQ-KFPG-AFAGNPN 614 (681)
Q Consensus 539 ~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~-~~~~-~~~gn~~ 614 (681)
+|++|++++.+|. +..+++|+.|++++|++++.+|..+..+++|++|++++|+++. +|.. ..+. .+.. .+.|||.
T Consensus 479 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 479 DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC-EESCGGGSCTTCCEEECCSCCC
T ss_pred ECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc-cCHhHhhhcccCcEEEccCCCc
Confidence 9999999998888 8999999999999999999999999999999999999999985 4543 2222 2344 7899999
Q ss_pred CCCCCC
Q 005711 615 LCLESS 620 (681)
Q Consensus 615 lc~~~~ 620 (681)
.|..+.
T Consensus 558 ~c~c~~ 563 (606)
T 3vq2_A 558 ACICEH 563 (606)
T ss_dssp CCSSTT
T ss_pred ccCCcc
Confidence 986543
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.1e-51 Score=476.55 Aligned_cols=514 Identities=22% Similarity=0.236 Sum_probs=434.9
Q ss_pred EEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcC-CccccCCCCCCEeeCCCCC
Q 005711 87 INLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVV-PDAIMKLRNLRELILKGNP 165 (681)
Q Consensus 87 L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~ 165 (681)
.+.++++++. +|. ..+++++|||++|.+++..|..|+++++|++|+|++|.+.+.+ |.+|.++++|++|+|++|
T Consensus 9 ~dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N- 83 (844)
T 3j0a_A 9 AFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS- 83 (844)
T ss_dssp EEESCCCSSC-CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-
T ss_pred EEccCCCCCC-CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-
Confidence 4455666664 454 4579999999999999999999999999999999999766666 788999999999999999
Q ss_pred CCCccCCchhccccCCccEEEccCCcCccccCcc--ccCCCCCCEEEccCccCcccccC----cCCcccEEECCCCCCcc
Q 005711 166 ELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPES--LYYLKSLKHLDLEKNNLTGNVHD----FYQSLLVLNLGSNRFSG 239 (681)
Q Consensus 166 ~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~~~----~~~~L~~L~L~~n~l~~ 239 (681)
.+.+..|..++++ ++|++|++++|.+++.+|.. +.++++|++|++++|.+++..+. .+.+|++|++++|.+++
T Consensus 84 ~l~~~~p~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 84 KIYFLHPDAFQGL-FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCEECTTSSCSC-SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred cCcccCHhHccCC-cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 5677789999999 99999999999999877765 99999999999999999887543 35669999999999998
Q ss_pred ccchhhccC--CCCCEEEccCCccccCCChhhcccCc------ccEEecCCCccccccCccccC---CCCCcEEeccCCC
Q 005711 240 TLPCFAASA--MSLTVLKLDNNSVVGGIPTCIASLQA------LTHLNLSHNHLNYEISPRLVF---FEKLLLLDLSFND 308 (681)
Q Consensus 240 ~~~~~~~~~--~~L~~L~L~~n~l~~~~p~~l~~l~~------L~~L~L~~n~l~~~~~~~l~~---l~~L~~L~L~~n~ 308 (681)
..+..+..+ ++|+.|++++|.+.+..|..++.+.+ |+.|++++|.+++..+..+.. ...++.+.++.+.
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 888888877 89999999999999888887777665 999999999998888776654 3567888876332
Q ss_pred ---------ccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEc
Q 005711 309 ---------LSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDL 379 (681)
Q Consensus 309 ---------l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 379 (681)
+.+..+..+..+. .++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..|.++++|++|++
T Consensus 243 ~~~~~~~~~l~~~~~~~f~~l~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 321 (844)
T 3j0a_A 243 MGAGFGFHNIKDPDQNTFAGLA-RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321 (844)
T ss_dssp CBCSSSCSSSTTGGGTTTTTTT-TSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEE
T ss_pred ccccccccccCCCChhhhhccc-cCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEEC
Confidence 2222222333221 248999999999999888899999999999999999999988999999999999999
Q ss_pred cCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCc
Q 005711 380 SHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGS 459 (681)
Q Consensus 380 s~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 459 (681)
++|.+++..|..+.++++|+.|++++|.+.+..+..+..+++|+.|++++|.+++. ..+++|+.|++++|+++ .
T Consensus 322 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~ 395 (844)
T 3j0a_A 322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-T 395 (844)
T ss_dssp ESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-C
T ss_pred CCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-c
Confidence 99999988899999999999999999999988888899999999999999999842 23889999999999998 4
Q ss_pred chhhhhcCCCCCEEEccCCcCcccC-CcccccCCccceeecccCccccCC--------CCCcccccCCcccc-----ccC
Q 005711 460 LNDAITKWTNLKYFSIARNKLSGNL-PNWLFSFQAIQMMDFSTNKFMGFI--------PDAVGMDLSDNLLH-----GTI 525 (681)
Q Consensus 460 ~~~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~ls~n~~~~~~--------p~~~~L~Ls~N~l~-----g~i 525 (681)
+|.. ..+++.|++++|.+++.. +..+..+++|+.|++++|++++.. +....|+|++|.++ +..
T Consensus 396 l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~ 472 (844)
T 3j0a_A 396 LPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC 472 (844)
T ss_dssp CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCC
T ss_pred cccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccc
Confidence 4543 568999999999998632 334568999999999999998543 44578999999997 455
Q ss_pred CcccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcceeeCCCCCCCCC
Q 005711 526 PKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQK 604 (681)
Q Consensus 526 p~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~ 604 (681)
|..+.++++|+.|+|++|++++.+|. +..+++|+.|+|++|++++..|..+. ++|+.|++++|++++.+|.. +..
T Consensus 473 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~ 548 (844)
T 3j0a_A 473 WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVS 548 (844)
T ss_dssp SSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSS
T ss_pred hhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCC
Confidence 66788999999999999999988888 88999999999999999988777766 89999999999999998854 445
Q ss_pred ccc-cccCCCCCCCCCC
Q 005711 605 FPG-AFAGNPNLCLESS 620 (681)
Q Consensus 605 ~~~-~~~gn~~lc~~~~ 620 (681)
+.. .+.|||..|..+.
T Consensus 549 L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 549 LSVLDITHNKFICECEL 565 (844)
T ss_dssp CCEEEEEEECCCCSSSC
T ss_pred cCEEEecCCCccccccc
Confidence 555 8999999996543
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2e-50 Score=450.05 Aligned_cols=483 Identities=19% Similarity=0.189 Sum_probs=330.3
Q ss_pred CCCCCceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCc
Q 005711 69 CTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPD 148 (681)
Q Consensus 69 cc~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 148 (681)
.|.|.|+ |+ .++++++ .+|..+. ++|++|++++|.+++..|..|+++++|++|++++|++++..|.
T Consensus 3 ~C~~~~~-c~----------~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 3 SCDASGV-CD----------GRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp EECTTSE-EE----------CTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred cCCCCce-EE----------CCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence 3789888 86 3344444 4565554 7899999999999988888999999999999999999988888
Q ss_pred cccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCcCcc-ccCccccCCCCCCEEEccCccCccccc-CcC--
Q 005711 149 AIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCG-EIPESLYYLKSLKHLDLEKNNLTGNVH-DFY-- 224 (681)
Q Consensus 149 ~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~~-- 224 (681)
+|.++++|++|++++| .+.+..|..++++ ++|++|++++|.+++ ..|..++++++|++|++++|.+.+.++ ..+
T Consensus 69 ~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~ 146 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDN-HLSSLSSSWFGPL-SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146 (549)
T ss_dssp TTTTCTTCCEEECTTS-CCCSCCHHHHTTC-TTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred hccccccCCEEECCCC-ccCccCHHHhccC-CCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhc
Confidence 9999999999999999 5566666778888 899999999999986 467789999999999999987443332 222
Q ss_pred -CcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChh-hcccCcccEEecCCCcccccc--C-ccccCCCCC
Q 005711 225 -QSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTC-IASLQALTHLNLSHNHLNYEI--S-PRLVFFEKL 299 (681)
Q Consensus 225 -~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~--~-~~l~~l~~L 299 (681)
.+|++|++++|.+++..|..+..+++|++|++++|.+.. +|.. +..+++|++|++++|.+++.. + .....+++|
T Consensus 147 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L 225 (549)
T 2z81_A 147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPM 225 (549)
T ss_dssp CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCC
T ss_pred ccccCeeeccCCcccccChhhhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCccccccccccchhhhhhcc
Confidence 235555555555555555555555555555555554432 2222 233455555555555544321 1 111223444
Q ss_pred cEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCcccccc------ccccCCCCC
Q 005711 300 LLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEI------PARIGNLTY 373 (681)
Q Consensus 300 ~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~------~~~l~~l~~ 373 (681)
+.|++++|.+++..+..+. ..+..+++|+.+++++|.+.+.. ...+..+++
T Consensus 226 ~~L~l~~n~l~~~~~~~l~-----------------------~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~ 282 (549)
T 2z81_A 226 KKLAFRGSVLTDESFNELL-----------------------KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK 282 (549)
T ss_dssp CEEEEESCEEEHHHHHHHH-----------------------GGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTT
T ss_pred cceeccccccchhHHHHHH-----------------------HHhhhhccccccccccccccccccccccchhhhhhhcc
Confidence 4444444444433222221 12233455555555555544321 112344556
Q ss_pred CCEEEccCCcCccc-----cCcccccCCCcceeecccccccccCcccc-CCCCCccEEEcccCcceeccc---cccCCCC
Q 005711 374 LQVIDLSHNMLSGS-----IPLNIVGCFQLLALIVNNNNLSGEIQPEL-DALDSLKILDISNNQISGEIP---LTLAGLK 444 (681)
Q Consensus 374 L~~L~Ls~n~l~~~-----~p~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~p---~~~~~l~ 444 (681)
|+.+++.++.+... ++..+....+|+.+++++|.+. .+|..+ ..+++|+.|++++|.+.+.+| ..++.++
T Consensus 283 L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~ 361 (549)
T 2z81_A 283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP 361 (549)
T ss_dssp CCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSST
T ss_pred cccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccc
Confidence 66666666554321 1111233456777777777765 444443 467778888888887776654 3366777
Q ss_pred CCcEEECCCCcCCCcch--hhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccC---C-CCCcccccCC
Q 005711 445 SLEIVDFSSNNLSGSLN--DAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGF---I-PDAVGMDLSD 518 (681)
Q Consensus 445 ~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~---~-p~~~~L~Ls~ 518 (681)
+|++|++++|++++..+ ..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++++. + +....||+++
T Consensus 362 ~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~ 440 (549)
T 2z81_A 362 SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSN 440 (549)
T ss_dssp TCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCS
T ss_pred cCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccchhcCCceEEECCC
Confidence 88888888888775432 45677788888888888777 5777777777888888888876532 2 3456788888
Q ss_pred ccccccCCcccccccccceeecCCCcCcccCCCcCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcceeeCCC
Q 005711 519 NLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPW 598 (681)
Q Consensus 519 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 598 (681)
|++++.+ ..+++|++|+|++|+++ .+|....+++|+.|++++|++++.+|..+..+++|+.|++++|++.|.+|.
T Consensus 441 N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 441 NNLDSFS----LFLPRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp SCCSCCC----CCCTTCCEEECCSSCCS-SCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred CChhhhc----ccCChhcEEECCCCccC-cCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 8888643 47899999999999999 788877899999999999999999999999999999999999999999873
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.2e-50 Score=447.23 Aligned_cols=490 Identities=22% Similarity=0.212 Sum_probs=356.8
Q ss_pred CCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEee
Q 005711 81 TGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELI 160 (681)
Q Consensus 81 ~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 160 (681)
+.+++.|+++++.+.+..+..+.++++|++|++++|.+++..+..|+++++|++|+|++|.+++..|.+|+++++|++|+
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 34688889999888887777888889999999999888887788888899999999999988877778888899999999
Q ss_pred CCCCCCCCccCCchhccccCCccEEEccCCcCcc-ccCccccCCCCCCEEEccCccCcccccCcCC---cc----cEEEC
Q 005711 161 LKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCG-EIPESLYYLKSLKHLDLEKNNLTGNVHDFYQ---SL----LVLNL 232 (681)
Q Consensus 161 L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~---~L----~~L~L 232 (681)
+++|. +.+..+..++++ ++|++|++++|.+++ .+|..++++++|++|++++|.+++..+..+. +| +.+++
T Consensus 107 L~~n~-l~~l~~~~~~~l-~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l 184 (570)
T 2z63_A 107 AVETN-LASLENFPIGHL-KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (570)
T ss_dssp CTTSC-CCCSTTCSCTTC-TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred ccccc-cccCCCcccccc-ccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhccc
Confidence 98884 444334457777 889999999888876 4688888888999999988888877665543 34 67788
Q ss_pred CCCCCccccchhhccCCCCCEEEccCCcccc-CCChhhcccCcccEEecCCCccc------cccCccccCCC--CCcEEe
Q 005711 233 GSNRFSGTLPCFAASAMSLTVLKLDNNSVVG-GIPTCIASLQALTHLNLSHNHLN------YEISPRLVFFE--KLLLLD 303 (681)
Q Consensus 233 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~------~~~~~~l~~l~--~L~~L~ 303 (681)
++|.+++..+..+... +|+.|++++|.... .++..+..+++++.+.+....+. ......+..++ .++.++
T Consensus 185 ~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 263 (570)
T 2z63_A 185 SLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263 (570)
T ss_dssp TTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEE
T ss_pred CCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhh
Confidence 8888877666666554 68888887774332 34455666666665554332211 11111122222 245556
Q ss_pred ccCC-CccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCC
Q 005711 304 LSFN-DLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHN 382 (681)
Q Consensus 304 L~~n-~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 382 (681)
++++ .+.+..|..+..+. +|+.|++++|.++ .+|..+..+ +|++|++++|.+. .+|. ..+++|+.|++++|
T Consensus 264 l~~~~~~~~~~~~~~~~l~---~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n 335 (570)
T 2z63_A 264 LAYLDYYLDDIIDLFNCLT---NVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSN 335 (570)
T ss_dssp EEETTEEESCSTTTTGGGT---TCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESC
T ss_pred hhcchhhhhhchhhhcCcC---cccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCC
Confidence 6655 55566666665555 6777777777776 466666666 7777777777766 4443 35667777777777
Q ss_pred cCccccCcccccCCCcceeecccccccccC--ccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcc
Q 005711 383 MLSGSIPLNIVGCFQLLALIVNNNNLSGEI--QPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSL 460 (681)
Q Consensus 383 ~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 460 (681)
.+.+..+. ..+++|+.|++++|.+++.. +..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+.+..
T Consensus 336 ~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~ 412 (570)
T 2z63_A 336 KGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMS 412 (570)
T ss_dssp BSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCT
T ss_pred cccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCcccccc
Confidence 76655554 56667777777777766543 45566677777777777777654433 667777777777777776554
Q ss_pred h-hhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceee
Q 005711 461 N-DAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLN 539 (681)
Q Consensus 461 ~-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ 539 (681)
+ ..+..+++|++|++++|.+.+..|..+..+++|+.|++++|++.+ +.+|..+..+++|++|+
T Consensus 413 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------~~~p~~~~~l~~L~~L~ 476 (570)
T 2z63_A 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE----------------NFLPDIFTELRNLTFLD 476 (570)
T ss_dssp TSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG----------------GEECSCCTTCTTCCEEE
T ss_pred chhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCcc----------------ccchhhhhcccCCCEEE
Confidence 4 456667777777777777776666666666666666666655431 46888899999999999
Q ss_pred cCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcceeeCCCCC
Q 005711 540 LSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQ 600 (681)
Q Consensus 540 Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~ 600 (681)
+++|++++.+|. +..+++|+.|++++|++++..|..+..+++|+.|++++|+++|.+|..+
T Consensus 477 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 538 (570)
T 2z63_A 477 LSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 538 (570)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred CCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence 999999988887 8999999999999999999988899999999999999999999998644
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.2e-49 Score=448.98 Aligned_cols=469 Identities=19% Similarity=0.217 Sum_probs=372.2
Q ss_pred CCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCC------C------cCCccccCCCCCCEeeCCCCCCCCccCCc
Q 005711 106 SFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFV------G------VVPDAIMKLRNLRELILKGNPELGGVFPG 173 (681)
Q Consensus 106 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~------~------~~p~~~~~l~~L~~L~L~~n~~~~~~~p~ 173 (681)
.+++.|+|+++.+.|.+|.+++++++|++|+|++|.+. + .+|... +..|+ +++++| .+.+.+|.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~-~l~~~~~~ 156 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKT-FVDYDPRE 156 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHH-HTCCCGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHh-hhccCchh
Confidence 47899999999999999999999999999999999762 2 333333 34455 566655 44455555
Q ss_pred hhccccCCccEEEccCCcCccccCccccCCCCCCEEEcc--CccCcccccCcC---CcccEEECCCCCCccc-cchhhcc
Q 005711 174 WVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLE--KNNLTGNVHDFY---QSLLVLNLGSNRFSGT-LPCFAAS 247 (681)
Q Consensus 174 ~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~--~n~l~~~~~~~~---~~L~~L~L~~n~l~~~-~~~~~~~ 247 (681)
.+..+...+..+++....+. ......++.+.+. .|.+++ +|..+ .+|++|++++|++++. ++.....
T Consensus 157 ~~~~~~~~l~~~~l~~~~~~------~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 229 (636)
T 4eco_A 157 DFSDLIKDCINSDPQQKSIK------KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN 229 (636)
T ss_dssp GSCHHHHHHHHHCTTSCCCC------CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC
T ss_pred hHHHHHHHHhhcCccccccc------cccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccc
Confidence 44432223333333322221 1111223333333 578888 77655 4599999999999873 2211110
Q ss_pred CCCCCEEEccCCccccCCChhhc--ccCcccEEecCCCccccccCccccCCCCCcEEeccCCC-ccC-CCChhhhhc---
Q 005711 248 AMSLTVLKLDNNSVVGGIPTCIA--SLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFND-LSG-PLPSKIAQT--- 320 (681)
Q Consensus 248 ~~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~p~~~~~~--- 320 (681)
-+.+...+.+|..++ ++++|++|++++|.+.+.+|..++.+++|++|++++|. ++| .+|..++.+
T Consensus 230 --------~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~ 301 (636)
T 4eco_A 230 --------ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADA 301 (636)
T ss_dssp --------TTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHS
T ss_pred --------cccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhcc
Confidence 012233445899988 99999999999999999999999999999999999998 998 899988876
Q ss_pred ccCCCccEEEccCCCCcCCCcc--cccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCC-
Q 005711 321 TEKAGLVLLDLSHNRFSGEIPL--KITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQ- 397 (681)
Q Consensus 321 ~~~~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~- 397 (681)
..+++|++|++++|+++ .+|. .++.+++|++|++++|+++|.+| .++.+++|++|++++|.++ .+|..+..+++
T Consensus 302 ~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~ 378 (636)
T 4eco_A 302 PVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQ 378 (636)
T ss_dssp GGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTT
T ss_pred ccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhccc
Confidence 12238999999999999 8998 89999999999999999999999 8999999999999999999 89999999999
Q ss_pred cceeecccccccccCccccCCCC--CccEEEcccCcceeccccccC-------CCCCCcEEECCCCcCCCcchhhhhcCC
Q 005711 398 LLALIVNNNNLSGEIQPELDALD--SLKILDISNNQISGEIPLTLA-------GLKSLEIVDFSSNNLSGSLNDAITKWT 468 (681)
Q Consensus 398 L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~p~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~l~ 468 (681)
|+.|++++|.++ .+|..+..++ +|+.|++++|.+.+.+|..+. .+++|++|++++|++++..+..+..++
T Consensus 379 L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~ 457 (636)
T 4eco_A 379 VENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS 457 (636)
T ss_dssp CCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTC
T ss_pred CcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCC
Confidence 999999999999 7888777655 899999999999999998888 888999999999999955455566799
Q ss_pred CCCEEEccCCcCcccCCcccccC--------CccceeecccCccccCCCCCcccccCCccccccCCcccc--ccccccee
Q 005711 469 NLKYFSIARNKLSGNLPNWLFSF--------QAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLF--QLQGLEYL 538 (681)
Q Consensus 469 ~L~~L~L~~n~l~~~~p~~~~~l--------~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~--~l~~L~~L 538 (681)
+|++|++++|+++ .+|...... ++|+.|++++|+++ .+|..+. .+++|++|
T Consensus 458 ~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~------------------~lp~~~~~~~l~~L~~L 518 (636)
T 4eco_A 458 PLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT------------------KLSDDFRATTLPYLVGI 518 (636)
T ss_dssp CCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC------------------BCCGGGSTTTCTTCCEE
T ss_pred CCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC------------------ccChhhhhccCCCcCEE
Confidence 9999999999999 666554432 27777777666654 6788887 89999999
Q ss_pred ecCCCcCcccCCC-cCCCCCCCEEEC------CCCcCcccCCccccCCCCCCeEecccCcceeeCCCCCCCCCccc-ccc
Q 005711 539 NLSFNFLDGQVPG-LYRLRSLRALDL------SHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPG-AFA 610 (681)
Q Consensus 539 ~Ls~N~l~~~ip~-~~~l~~L~~L~L------s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~-~~~ 610 (681)
+|++|++++ +|. ++.+++|+.|++ ++|++.+.+|..+..+++|++|++++|++ +.+|.... ..+.. .+.
T Consensus 519 ~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~Ls 595 (636)
T 4eco_A 519 DLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT-PNISVLDIK 595 (636)
T ss_dssp ECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-TTCCEEECC
T ss_pred ECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh-CcCCEEECc
Confidence 999999998 777 999999999999 56889999999999999999999999999 78886532 44545 889
Q ss_pred CCCCCCCCC
Q 005711 611 GNPNLCLES 619 (681)
Q Consensus 611 gn~~lc~~~ 619 (681)
+|+..|...
T Consensus 596 ~N~l~~~~~ 604 (636)
T 4eco_A 596 DNPNISIDL 604 (636)
T ss_dssp SCTTCEEEC
T ss_pred CCCCccccH
Confidence 999887544
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.6e-47 Score=423.16 Aligned_cols=490 Identities=20% Similarity=0.188 Sum_probs=365.1
Q ss_pred ccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhcc
Q 005711 98 VHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGN 177 (681)
Q Consensus 98 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~ 177 (681)
+|..+. +++++|++++|.+++..+..|.++++|++|+|++|++++..|..|.++++|++|++++| .+.+..|..++.
T Consensus 22 ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~ 98 (570)
T 2z63_A 22 IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSG 98 (570)
T ss_dssp CCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTT
T ss_pred cCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCccCHhhhcC
Confidence 454443 57999999999999988889999999999999999999888889999999999999999 456667788888
Q ss_pred ccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCccc-ccCcC---CcccEEECCCCCCccccchhhccCCCC--
Q 005711 178 FSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGN-VHDFY---QSLLVLNLGSNRFSGTLPCFAASAMSL-- 251 (681)
Q Consensus 178 l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~~~~~---~~L~~L~L~~n~l~~~~~~~~~~~~~L-- 251 (681)
+ ++|++|++++|.+++..+..++++++|++|++++|.+++. +|..+ .+|++|++++|.+++..+..+..+++|
T Consensus 99 l-~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 177 (570)
T 2z63_A 99 L-SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177 (570)
T ss_dssp C-TTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTT
T ss_pred c-cccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccch
Confidence 8 8999999999999866555799999999999999998863 45543 457888888888877777777777777
Q ss_pred --CEEEccCCccccCCChhhcccCcccEEecCCCcccc-ccCccccCCCCCcEEeccCCCcc------CCCChhhhhccc
Q 005711 252 --TVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNY-EISPRLVFFEKLLLLDLSFNDLS------GPLPSKIAQTTE 322 (681)
Q Consensus 252 --~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~------~~~p~~~~~~~~ 322 (681)
+.|++++|.+.+..|..+... +|++|++++|.... .++..+..++.++...+....+. ......+..+..
T Consensus 178 ~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~ 256 (570)
T 2z63_A 178 LNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256 (570)
T ss_dssp CCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGG
T ss_pred hhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccc
Confidence 778888888777666666555 68888887764332 23444555666665554432221 111112222221
Q ss_pred CCCccEEEccCC-CCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCccee
Q 005711 323 KAGLVLLDLSHN-RFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLAL 401 (681)
Q Consensus 323 ~~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L 401 (681)
. .++.++++++ .+.+..|..+..+++|++|++++|.+. .+|..+..+ +|++|++++|.+. .+|. ..+++|+.+
T Consensus 257 l-~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L 330 (570)
T 2z63_A 257 L-TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRL 330 (570)
T ss_dssp S-EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEE
T ss_pred c-chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEE
Confidence 1 3666777777 666677777777788888888888776 466667777 7888888888776 4554 356777777
Q ss_pred ecccccccccCccccCCCCCccEEEcccCcceecc--ccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCc
Q 005711 402 IVNNNNLSGEIQPELDALDSLKILDISNNQISGEI--PLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNK 479 (681)
Q Consensus 402 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 479 (681)
++++|.+.+..+. ..+++|+.|++++|.+++.. |..+.++++|++|++++|.+.+..+. +..+++|++|++++|.
T Consensus 331 ~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~ 407 (570)
T 2z63_A 331 TFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSN 407 (570)
T ss_dssp EEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSE
T ss_pred eCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCc
Confidence 7777777665554 56677777777777776543 56667777777777777777654443 6777777777777777
Q ss_pred CcccCC-cccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCc-ccCCC-cCCCC
Q 005711 480 LSGNLP-NWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLD-GQVPG-LYRLR 556 (681)
Q Consensus 480 l~~~~p-~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~-~~ip~-~~~l~ 556 (681)
+.+..| ..+..+++|+.|++++|. +++.+|..+..+++|++|++++|+++ +.+|. +..++
T Consensus 408 l~~~~~~~~~~~l~~L~~L~l~~n~-----------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~ 470 (570)
T 2z63_A 408 LKQMSEFSVFLSLRNLIYLDISHTH-----------------TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470 (570)
T ss_dssp EESCTTSCTTTTCTTCCEEECTTSC-----------------CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred cccccchhhhhcCCCCCEEeCcCCc-----------------ccccchhhhhcCCcCcEEECcCCcCccccchhhhhccc
Confidence 766544 345566666666655554 45567788899999999999999998 57887 89999
Q ss_pred CCCEEECCCCcCcccCCccccCCCCCCeEecccCcceeeCCCC-CCCCCccc-cccCCCCCCCC
Q 005711 557 SLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWK-QGYQKFPG-AFAGNPNLCLE 618 (681)
Q Consensus 557 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~~~~-~~~gn~~lc~~ 618 (681)
+|+.|++++|++++..|..+..+++|++|++++|++++..|.. ..+..+.. .+.+|+..|..
T Consensus 471 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 534 (570)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCC
Confidence 9999999999999999999999999999999999999876643 23344444 78899887743
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.5e-48 Score=428.79 Aligned_cols=456 Identities=20% Similarity=0.178 Sum_probs=331.3
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCC
Q 005711 85 VSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164 (681)
Q Consensus 85 ~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 164 (681)
+.||+++++++ .+|..+. ++|++|++++|.+++..|..|.++++|++|+|++|++++..|.+|+++++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 36899999998 5777776 89999999999999888889999999999999999999888999999999999999999
Q ss_pred CCCCccCCchhccccCCccEEEccCCcCcc-ccCccccCCCCCCEEEccCccCcccccCcCCcc--cEEECCCCCC--cc
Q 005711 165 PELGGVFPGWVGNFSMNLEKLDFSFNSFCG-EIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSL--LVLNLGSNRF--SG 239 (681)
Q Consensus 165 ~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L--~~L~L~~n~l--~~ 239 (681)
++ . .+|.. .+ ++|++|++++|.+++ .+|..++++++|++|++++|.+++.....+.+| ++|++++|.+ .+
T Consensus 80 ~l-~-~lp~~--~l-~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~ 154 (520)
T 2z7x_B 80 KL-V-KISCH--PT-VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEK 154 (520)
T ss_dssp CC-C-EEECC--CC-CCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSS
T ss_pred ce-e-ecCcc--cc-CCccEEeccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccc
Confidence 54 3 56665 66 899999999999987 578999999999999999999876544444455 6666666666 55
Q ss_pred ccchhhccCC-CCCEEEccCCccccCCCh-hhcccCcccEEecCCCc-------cccccCccccCCCCCcEEeccCCCcc
Q 005711 240 TLPCFAASAM-SLTVLKLDNNSVVGGIPT-CIASLQALTHLNLSHNH-------LNYEISPRLVFFEKLLLLDLSFNDLS 310 (681)
Q Consensus 240 ~~~~~~~~~~-~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~-------l~~~~~~~l~~l~~L~~L~L~~n~l~ 310 (681)
..|..+..+. ....+++++|.+.+.++. .+..+++|+.+++++|. +.+.++ .+..+++|+.|++++|.++
T Consensus 155 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~ 233 (520)
T 2z7x_B 155 EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETT 233 (520)
T ss_dssp CCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEE
T ss_pred cccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccC
Confidence 5555554443 222445555555443332 33445555555555554 333333 3444455555555444444
Q ss_pred CCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCcccccccccc-----CCCCCCCEEEccCCcCc
Q 005711 311 GPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARI-----GNLTYLQVIDLSHNMLS 385 (681)
Q Consensus 311 ~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l~ 385 (681)
+..+..+... . ..++|++|++++|.++|.+|..+ +++++|+.+++++|.+
T Consensus 234 ~~~~~~~~~~-----------------------~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~- 288 (520)
T 2z7x_B 234 WNSFIRILQL-----------------------V-WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF- 288 (520)
T ss_dssp HHHHHHHHHH-----------------------H-HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-
T ss_pred HHHHHHHHHH-----------------------h-hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-
Confidence 3222111111 0 12456666666666665555555 5666666666666666
Q ss_pred cccC-cccccC---CCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCC--c
Q 005711 386 GSIP-LNIVGC---FQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSG--S 459 (681)
Q Consensus 386 ~~~p-~~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~ 459 (681)
.+| ..+..+ .+|+.|++++|.+.+... ...+++|++|++++|.+++.+|..+..+++|++|++++|++++ .
T Consensus 289 -~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 365 (520)
T 2z7x_B 289 -GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK 365 (520)
T ss_dssp -CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHH
T ss_pred -ecchhhhhcccccCceeEEEcCCCccccccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcccc
Confidence 344 233332 456777777776654321 2577889999999999998888888999999999999999986 5
Q ss_pred chhhhhcCCCCCEEEccCCcCcccCCcc-cccCCccceeecccCccccCCCCCcccccCCccccccCCccccccccccee
Q 005711 460 LNDAITKWTNLKYFSIARNKLSGNLPNW-LFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYL 538 (681)
Q Consensus 460 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L 538 (681)
+|..+..+++|++|++++|.+.+.+|.. +..+++|+.|++++|++++ .+|..+. ++|++|
T Consensus 366 ~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~-----------------~~~~~l~--~~L~~L 426 (520)
T 2z7x_B 366 IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD-----------------TIFRCLP--PRIKVL 426 (520)
T ss_dssp HHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG-----------------GGGGSCC--TTCCEE
T ss_pred chHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCc-----------------chhhhhc--ccCCEE
Confidence 6778889999999999999998766654 6677788877777776654 4454443 689999
Q ss_pred ecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCcc-ccCCCCCCeEecccCcceeeCCC
Q 005711 539 NLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGN-ISSLQELTLLNLSYNSFSGFVPW 598 (681)
Q Consensus 539 ~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~~~~p~ 598 (681)
++++|+++ .+|. ++.+++|+.|++++|+++ .+|.. +..+++|++|++++|+++|.++.
T Consensus 427 ~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 427 DLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp ECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred ECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 99999999 6776 779999999999999999 46655 89999999999999999998864
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2e-46 Score=417.75 Aligned_cols=482 Identities=21% Similarity=0.209 Sum_probs=352.8
Q ss_pred CCCCCCCC-CCCCceeec--CCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEcc
Q 005711 62 SSWVGSNC-TNWTGVACN--FQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLS 138 (681)
Q Consensus 62 ~~w~~~~c-c~w~gv~c~--~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 138 (681)
+.|.+. | |++.+++.- ....++++|+++++.+.+..+..+.++++|++|++++|.+++..|..|+++++|++|+++
T Consensus 4 C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 82 (549)
T 2z81_A 4 CDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 82 (549)
T ss_dssp ECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred CCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECC
Confidence 456444 3 334444331 133589999999999999888899999999999999999999889999999999999999
Q ss_pred CCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCcCccccC-ccccCCCCCCEEEccCccCc
Q 005711 139 YNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIP-ESLYYLKSLKHLDLEKNNLT 217 (681)
Q Consensus 139 ~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~ 217 (681)
+|.+++..|..|+++++|++|++++|++.....|..++++ ++|++|++++|.+.+.+| ..+.++++|++|++++|.++
T Consensus 83 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 83 DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL-TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp TSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC-TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhcc-CCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 9999988777899999999999999965544677888888 899999999999555555 68999999999999999999
Q ss_pred ccccCcCC---cccEEECCCCCCccccchhhccCCCCCEEEccCCccccCC--Ch-hhcccCcccEEecCCCccccccCc
Q 005711 218 GNVHDFYQ---SLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGI--PT-CIASLQALTHLNLSHNHLNYEISP 291 (681)
Q Consensus 218 ~~~~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~--p~-~l~~l~~L~~L~L~~n~l~~~~~~ 291 (681)
+..|..+. +|++|+++.|.+.......+..+++|++|++++|++++.. |. ....+++|++|++++|.+++..+.
T Consensus 162 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 241 (549)
T 2z81_A 162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241 (549)
T ss_dssp EECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHH
T ss_pred ccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHH
Confidence 98887764 4899999999986433334467899999999999998742 22 234578999999999998875443
Q ss_pred ----cccCCCCCcEEeccCCCccCCCC---hhhhhcccCCCccEEEccCCCCcCC-----CcccccCCCCCCEEeccCCc
Q 005711 292 ----RLVFFEKLLLLDLSFNDLSGPLP---SKIAQTTEKAGLVLLDLSHNRFSGE-----IPLKITELKSLQALFLSNNL 359 (681)
Q Consensus 292 ----~l~~l~~L~~L~L~~n~l~~~~p---~~~~~~~~~~~L~~L~Ls~n~l~~~-----~p~~l~~l~~L~~L~L~~n~ 359 (681)
.+..+++|+.+++++|.+.+... ..........+++.|++.++.+... ++..+...++|++|++++|.
T Consensus 242 ~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~ 321 (549)
T 2z81_A 242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321 (549)
T ss_dssp HHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC
T ss_pred HHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc
Confidence 34667899999999998875311 1111223334777888877766532 11112234567777777777
Q ss_pred ccccccccc-CCCCCCCEEEccCCcCccccCc---ccccCCCcceeecccccccccCc--cccCCCCCccEEEcccCcce
Q 005711 360 LIGEIPARI-GNLTYLQVIDLSHNMLSGSIPL---NIVGCFQLLALIVNNNNLSGEIQ--PELDALDSLKILDISNNQIS 433 (681)
Q Consensus 360 l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~p~---~~~~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~ 433 (681)
+. .+|..+ .++++|++|++++|.+++.+|. .+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|+++
T Consensus 322 l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 400 (549)
T 2z81_A 322 VF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400 (549)
T ss_dssp CC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred cc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc
Confidence 65 455444 4577777777777777765532 34556667777777766655322 33556666666666666666
Q ss_pred eccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccCCCCCcc
Q 005711 434 GEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVG 513 (681)
Q Consensus 434 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~ 513 (681)
.+|..+..+++|++|++++|++++ +|..+ .++|++|++++|++++.+ ..+++|+.|++++
T Consensus 401 -~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~------------ 460 (549)
T 2z81_A 401 -PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISR------------ 460 (549)
T ss_dssp -CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCS------------
T ss_pred -cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCC------------
Confidence 456666666666666666666652 23222 245666666666665432 2445555555555
Q ss_pred cccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCC
Q 005711 514 MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIP 573 (681)
Q Consensus 514 L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p 573 (681)
|+++ .+|. ...+++|++|+|++|++++.+|. +..+++|+.|++++|.+++..|
T Consensus 461 -----N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 461 -----NKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp -----SCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred -----CccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 4554 6665 46789999999999999998888 8999999999999999998877
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.8e-47 Score=418.97 Aligned_cols=449 Identities=20% Similarity=0.200 Sum_probs=345.8
Q ss_pred CEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEcc
Q 005711 109 EFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFS 188 (681)
Q Consensus 109 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~ 188 (681)
++||+++|.++ .+|..+. ++|++|++++|.+++..|.+|.++++|++|++++| .+.+..|..++++ ++|++|+++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l-~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFN-QELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTC-TTCCEEECC
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcc-cCCCEEecC
Confidence 57888888887 4666555 78888888888888776677888888887777777 3445556666666 666666666
Q ss_pred CCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChh
Q 005711 189 FNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTC 268 (681)
Q Consensus 189 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~ 268 (681)
+|.++ .+|.. .+++|++|++++|.+++. .+|..++.+++|++|++++|.+++ ..
T Consensus 78 ~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~--------------------~~p~~~~~l~~L~~L~L~~n~l~~---~~ 131 (520)
T 2z7x_B 78 HNKLV-KISCH--PTVNLKHLDLSFNAFDAL--------------------PICKEFGNMSQLKFLGLSTTHLEK---SS 131 (520)
T ss_dssp SSCCC-EEECC--CCCCCSEEECCSSCCSSC--------------------CCCGGGGGCTTCCEEEEEESSCCG---GG
T ss_pred CCcee-ecCcc--ccCCccEEeccCCccccc--------------------cchhhhccCCcceEEEecCcccch---hh
Confidence 66666 44444 556666666665554421 456778888888888888888875 35
Q ss_pred hcccCcc--cEEecCCCcc--ccccCccccCCC-CCcEEeccCCCccCCCChh-hhhcccCCCccEEEccCCC-------
Q 005711 269 IASLQAL--THLNLSHNHL--NYEISPRLVFFE-KLLLLDLSFNDLSGPLPSK-IAQTTEKAGLVLLDLSHNR------- 335 (681)
Q Consensus 269 l~~l~~L--~~L~L~~n~l--~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~~-~~~~~~~~~L~~L~Ls~n~------- 335 (681)
+..+++| ++|++++|.+ .+..|..+..+. ....+++++|.+.+.++.. +..+. +|+.+++++|.
T Consensus 132 ~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~---~L~~L~l~~n~~~~~~~~ 208 (520)
T 2z7x_B 132 VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVA---NLELSNIKCVLEDNKCSY 208 (520)
T ss_dssp GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCS---EEEECCEEECCSTTTTHH
T ss_pred ccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhccc---ceeeccccccccccccce
Confidence 6667777 8888888888 667777666655 3445678888877766653 33333 79999999987
Q ss_pred CcCCCcccccCCCCCCEEeccCCccccccccccC---CCCCCCEEEccCCcCccccCccc-----ccCCCcceeeccccc
Q 005711 336 FSGEIPLKITELKSLQALFLSNNLLIGEIPARIG---NLTYLQVIDLSHNMLSGSIPLNI-----VGCFQLLALIVNNNN 407 (681)
Q Consensus 336 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~Ls~n~l~~~~p~~~-----~~~~~L~~L~l~~n~ 407 (681)
+.+.+| .+..+++|+.|++++|.+++..+..+. ..++|++|++++|.++|.+|..+ ..+++|+.+++++|.
T Consensus 209 ~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~ 287 (520)
T 2z7x_B 209 FLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV 287 (520)
T ss_dssp HHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECC
T ss_pred eecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccc
Confidence 666666 788899999999999988765332221 24689999999999999999998 889999999999999
Q ss_pred ccccCc-cccCCC---CCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcc-
Q 005711 408 LSGEIQ-PELDAL---DSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSG- 482 (681)
Q Consensus 408 l~~~~~-~~~~~l---~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~- 482 (681)
+ .+| ..+..+ .+|+.|++++|.+.+.. .+..+++|++|++++|++++.+|..+..+++|++|++++|++++
T Consensus 288 ~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 363 (520)
T 2z7x_B 288 F--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL 363 (520)
T ss_dssp C--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBH
T ss_pred e--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcc
Confidence 8 455 333333 67999999999987432 12689999999999999999899999999999999999999987
Q ss_pred -cCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCcc-cccccccceeecCCCcCcccCCC-cCCCCCCC
Q 005711 483 -NLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKG-LFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLR 559 (681)
Q Consensus 483 -~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~-l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~ 559 (681)
.+|..+..+++|+.|++++|++.+ .+|.. +..+++|++|++++|++++.+|. +. ++|+
T Consensus 364 ~~~~~~~~~l~~L~~L~Ls~N~l~~-----------------~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~ 424 (520)
T 2z7x_B 364 SKIAEMTTQMKSLQQLDISQNSVSY-----------------DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIK 424 (520)
T ss_dssp HHHHHHHTTCTTCCEEECCSSCCBC-----------------CGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCC
T ss_pred ccchHHHhhCCCCCEEECCCCcCCc-----------------ccccchhccCccCCEEECcCCCCCcchhhhhc--ccCC
Confidence 567888999999999988887764 24443 67789999999999999988876 43 7999
Q ss_pred EEECCCCcCcccCCccccCCCCCCeEecccCcceeeCCCC--CCCCCccc-cccCCCCCCC
Q 005711 560 ALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWK--QGYQKFPG-AFAGNPNLCL 617 (681)
Q Consensus 560 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~--~~~~~~~~-~~~gn~~lc~ 617 (681)
.|++++|+++ .+|..+..+++|++|++++|++++ +|.. ..+..+.. .+.+|+..|.
T Consensus 425 ~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 425 VLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp EEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred EEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCccc
Confidence 9999999999 889888899999999999999995 5543 22333444 7899998885
No 20
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.8e-45 Score=414.80 Aligned_cols=503 Identities=22% Similarity=0.200 Sum_probs=343.1
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeC
Q 005711 82 GHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELIL 161 (681)
Q Consensus 82 ~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 161 (681)
..+++|||++|.+++..+.+|.++++|++|||++|.|++..+.+|+++++|++|+|++|++++..+.+|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 46788888888888776778888888888888888888777778888888888888888888766677888888888888
Q ss_pred CCCCCCCccCCchhccccCCccEEEccCCcCcc-ccCccccCCCCCCEEEccCccCcccccCcCCc-------ccEEECC
Q 005711 162 KGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCG-EIPESLYYLKSLKHLDLEKNNLTGNVHDFYQS-------LLVLNLG 233 (681)
Q Consensus 162 ~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-------L~~L~L~ 233 (681)
++| .+.+..+..++++ ++|++|++++|.+++ .+|..++.+++|++|++++|.+++..+..+.. ...++++
T Consensus 132 s~N-~l~~l~~~~~~~L-~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls 209 (635)
T 4g8a_A 132 VET-NLASLENFPIGHL-KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 209 (635)
T ss_dssp TTS-CCCCSTTCCCTTC-TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred CCC-cCCCCChhhhhcC-cccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcc
Confidence 888 4455555567777 788888888888865 46777888888888888888888777665543 3467788
Q ss_pred CCCCccccchhhccCCCCCEEEccCCccccC-CChhhcccCcccEEecCCCcc------ccccCccccCCCCCcEEeccC
Q 005711 234 SNRFSGTLPCFAASAMSLTVLKLDNNSVVGG-IPTCIASLQALTHLNLSHNHL------NYEISPRLVFFEKLLLLDLSF 306 (681)
Q Consensus 234 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l------~~~~~~~l~~l~~L~~L~L~~ 306 (681)
.|.++...+. ......++.+++.+|..... .+..+..+..++...+..+.. .......+.....+...++..
T Consensus 210 ~n~l~~i~~~-~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~ 288 (635)
T 4g8a_A 210 LNPMNFIQPG-AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 288 (635)
T ss_dssp TCCCCEECTT-TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE
T ss_pred cCcccccCcc-cccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhh
Confidence 8877644333 33344566777777654422 233445555555554432221 111222233334444444433
Q ss_pred CCccCC---CChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCc
Q 005711 307 NDLSGP---LPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNM 383 (681)
Q Consensus 307 n~l~~~---~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 383 (681)
+..... .+..+... .+++.+++.++.+.+.. .+.....++.|++.+|.+.+..+ ..++.|+.+++..|.
T Consensus 289 ~~~~~~~~~~~~~~~~~---~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~ 360 (635)
T 4g8a_A 289 AYLDYYLDGIIDLFNCL---TNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNK 360 (635)
T ss_dssp ECCCSCEEECTTTTGGG---TTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCC
T ss_pred hhhcccccchhhhhhhh---ccccccccccccccccc--ccccchhhhhhhcccccccCcCc---ccchhhhhccccccc
Confidence 322211 11122222 25666666666665332 24445667777777776654432 234566677777666
Q ss_pred CccccCcccccCCCcceeecccccccc--cCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcch
Q 005711 384 LSGSIPLNIVGCFQLLALIVNNNNLSG--EIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLN 461 (681)
Q Consensus 384 l~~~~p~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~ 461 (681)
..... ....+++|+.+++++|.+.. ..+..+..+.+|+.+++..|.... .+..+..+++|+.++++.|+.....+
T Consensus 361 ~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~ 437 (635)
T 4g8a_A 361 GGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE 437 (635)
T ss_dssp SCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTS
T ss_pred CCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccc
Confidence 54322 23456677777777776643 334444556677777777776653 34456667777777777666554333
Q ss_pred -hhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCcccc-C-------CCCCcccccCCccccccCCcccccc
Q 005711 462 -DAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMG-F-------IPDAVGMDLSDNLLHGTIPKGLFQL 532 (681)
Q Consensus 462 -~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~-~-------~p~~~~L~Ls~N~l~g~ip~~l~~l 532 (681)
..+..+++++.++++.|.+.+..+..+..++.++.|++++|++.. . .+..+.|||++|++++..|..|.++
T Consensus 438 ~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l 517 (635)
T 4g8a_A 438 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 517 (635)
T ss_dssp SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred ccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCC
Confidence 345666777777777777776666667777777777777775332 1 2334567788888887889999999
Q ss_pred cccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCC-CCCCeEecccCcceeeCCC
Q 005711 533 QGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSL-QELTLLNLSYNSFSGFVPW 598 (681)
Q Consensus 533 ~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~~~~p~ 598 (681)
++|++|+|++|++++.+|. +.++++|+.|||++|++++..|+.+..+ ++|++|++++|++.|.|..
T Consensus 518 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 518 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp TTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred CCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 9999999999999988887 8899999999999999999999999988 6899999999999998863
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.4e-46 Score=425.89 Aligned_cols=452 Identities=19% Similarity=0.224 Sum_probs=347.0
Q ss_pred CCCCEEECCCCcCCccccccccCCCCCCEEEc-cCCCCCCcCCccccCC-CCCC-----Ee---------eCCCCCCCCc
Q 005711 106 SFLEFLVLSSNAFTGRISTCFGGLSGLKTLDL-SYNKFVGVVPDAIMKL-RNLR-----EL---------ILKGNPELGG 169 (681)
Q Consensus 106 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L-s~n~l~~~~p~~~~~l-~~L~-----~L---------~L~~n~~~~~ 169 (681)
.+++.|+|+++.+.|.+|+.|++|++|++|+| ++|.++|..|..-... ..+. .+ .......+..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57899999999999999999999999999999 8998887755322111 0000 00 0000000000
Q ss_pred -----------cCCchhccccCCccEEEccC--CcCccccCccccCCCCCCEEEccCccCccc-ccCcCCcccEEECCCC
Q 005711 170 -----------VFPGWVGNFSMNLEKLDFSF--NSFCGEIPESLYYLKSLKHLDLEKNNLTGN-VHDFYQSLLVLNLGSN 235 (681)
Q Consensus 170 -----------~~p~~l~~l~~~L~~L~L~~--n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~L~~L~L~~n 235 (681)
..+...... ..++.+.+.. |.+++ +|..++++++|++|++++|.+++. ++..+.. .+.|
T Consensus 403 l~~~~l~~~~~~~~i~~~~~-l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~-----~s~n 475 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSR-ISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWED-----ANSD 475 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCC-CCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC-----TTSH
T ss_pred HHHHHhhhCccccccccccc-cchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccc-----cccc
Confidence 001111111 2344444444 78887 899999999999999999999872 2222111 1224
Q ss_pred CCccccchhhc--cCCCCCEEEccCCccccCCChhhcccCcccEEecCCCc-ccc-ccCccccCCC-------CCcEEec
Q 005711 236 RFSGTLPCFAA--SAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNH-LNY-EISPRLVFFE-------KLLLLDL 304 (681)
Q Consensus 236 ~l~~~~~~~~~--~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l~-------~L~~L~L 304 (681)
.++|.+|..++ ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++.++ +|+.|++
T Consensus 476 ~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~L 555 (876)
T 4ecn_A 476 YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM 555 (876)
T ss_dssp HHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEEC
T ss_pred cccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEe
Confidence 45567888877 99999999999999999999999999999999999998 888 7887666555 9999999
Q ss_pred cCCCccCCCCh--hhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCC-CCEEEccC
Q 005711 305 SFNDLSGPLPS--KIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTY-LQVIDLSH 381 (681)
Q Consensus 305 ~~n~l~~~~p~--~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~Ls~ 381 (681)
++|.++ .+|. .+..+. +|+.|++++|.++ .+| .+..+++|+.|++++|.++ .+|..+.++++ |+.|++++
T Consensus 556 s~N~L~-~ip~~~~l~~L~---~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~ 628 (876)
T 4ecn_A 556 GYNNLE-EFPASASLQKMV---KLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSH 628 (876)
T ss_dssp CSSCCC-BCCCHHHHTTCT---TCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCS
T ss_pred eCCcCC-ccCChhhhhcCC---CCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcC
Confidence 999998 7887 777766 8999999999998 788 8888999999999999988 78888888888 99999999
Q ss_pred CcCccccCcccccCCC--cceeecccccccccCcccc---C--CCCCccEEEcccCcceeccccc-cCCCCCCcEEECCC
Q 005711 382 NMLSGSIPLNIVGCFQ--LLALIVNNNNLSGEIQPEL---D--ALDSLKILDISNNQISGEIPLT-LAGLKSLEIVDFSS 453 (681)
Q Consensus 382 n~l~~~~p~~~~~~~~--L~~L~l~~n~l~~~~~~~~---~--~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~ 453 (681)
|.++ .+|..+..... |+.|++++|.+.+.+|... . .+++|+.|++++|.++ .+|.. +..+++|+.|++++
T Consensus 629 N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~ 706 (876)
T 4ecn_A 629 NKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSN 706 (876)
T ss_dssp SCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCS
T ss_pred CCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCC
Confidence 9988 78877766544 8999999999888665322 2 3458889999999888 45544 44788899999999
Q ss_pred CcCCCcchhhhhc--------CCCCCEEEccCCcCcccCCcccc--cCCccceeecccCccccCCCCCcccccCCccccc
Q 005711 454 NNLSGSLNDAITK--------WTNLKYFSIARNKLSGNLPNWLF--SFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHG 523 (681)
Q Consensus 454 n~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g 523 (681)
|+++ .+|..+.. +++|++|+|++|+++ .+|..+. .+++|+.|++++|+++
T Consensus 707 N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~------------------ 766 (876)
T 4ecn_A 707 NLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS------------------ 766 (876)
T ss_dssp CCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCS------------------
T ss_pred CcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCC------------------
Confidence 9888 55554432 238889999998888 6777776 7777777777766654
Q ss_pred cCCcccccccccceeecCC------CcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcceeeC
Q 005711 524 TIPKGLFQLQGLEYLNLSF------NFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFV 596 (681)
Q Consensus 524 ~ip~~l~~l~~L~~L~Ls~------N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ 596 (681)
.+|..++.+++|+.|+|++ |++.+.+|. +.++++|+.|+|++|++ +.+|..+. ++|+.||+++|++...-
T Consensus 767 ~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 767 SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISID 843 (876)
T ss_dssp SCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEE
T ss_pred ccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccC
Confidence 3678888999999999976 888889998 99999999999999999 78998876 69999999999987653
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3e-45 Score=408.74 Aligned_cols=458 Identities=18% Similarity=0.171 Sum_probs=323.8
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCC
Q 005711 85 VSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164 (681)
Q Consensus 85 ~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 164 (681)
+.++++++++++ +|..+. ++|++|++++|.+++..|..|+++++|++|+|++|++++..|.+|.++++|++|++++|
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 678999999986 776665 89999999999999988899999999999999999999888999999999999999999
Q ss_pred CCCCccCCchhccccCCccEEEccCCcCcc-ccCccccCCCCCCEEEccCccCcccccCcCCcc--cEEECCCCCC--cc
Q 005711 165 PELGGVFPGWVGNFSMNLEKLDFSFNSFCG-EIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSL--LVLNLGSNRF--SG 239 (681)
Q Consensus 165 ~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L--~~L~L~~n~l--~~ 239 (681)
++ . .+|.. .+ ++|++|++++|.+++ .+|..++++++|++|++++|.+++.....+.+| ++|++++|.+ ++
T Consensus 111 ~l-~-~lp~~--~l-~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~ 185 (562)
T 3a79_B 111 RL-Q-NISCC--PM-ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKG 185 (562)
T ss_dssp CC-C-EECSC--CC-TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCS
T ss_pred cC-C-ccCcc--cc-ccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccc
Confidence 64 3 56665 66 899999999999986 457899999999999999999876444444444 6666666666 55
Q ss_pred ccchhhccCC-CCCEEEccCCccccCCCh-hhcccCcccEEecCCCc-----cccccCccccCCCCCcEEeccCCCccCC
Q 005711 240 TLPCFAASAM-SLTVLKLDNNSVVGGIPT-CIASLQALTHLNLSHNH-----LNYEISPRLVFFEKLLLLDLSFNDLSGP 312 (681)
Q Consensus 240 ~~~~~~~~~~-~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~-----l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 312 (681)
..|..+..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|. +.+ ....+..+++|+.+++.++.+.+.
T Consensus 186 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~-~~~~l~~l~~L~~L~L~~~~l~~~ 264 (562)
T 3a79_B 186 GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT-FLSELTRGPTLLNVTLQHIETTWK 264 (562)
T ss_dssp SSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH-HHHHHHSCSSCEEEEEEEEEECHH
T ss_pred cCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHH-HHHHHhccCcceEEEecCCcCcHH
Confidence 5555555443 111345555555543332 23345555555555543 111 112233444444444444433321
Q ss_pred CChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCcccccccccc-----CCCCCCCEEEccCCcCccc
Q 005711 313 LPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARI-----GNLTYLQVIDLSHNMLSGS 387 (681)
Q Consensus 313 ~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l~~~ 387 (681)
.... ++..+ ..++|++|++++|.++|.+|..+ .+++.|+.++++.+.+ .
T Consensus 265 ~~~~-----------------------~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~ 318 (562)
T 3a79_B 265 CSVK-----------------------LFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--L 318 (562)
T ss_dssp HHHH-----------------------HHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--S
T ss_pred HHHH-----------------------HHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--e
Confidence 1111 11111 12356666666666655555554 4455555555555554 2
Q ss_pred cCc-ccc---cCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCC--cch
Q 005711 388 IPL-NIV---GCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSG--SLN 461 (681)
Q Consensus 388 ~p~-~~~---~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~ 461 (681)
+|. .+. ...+++.|++++|.+..... ...+++|++|++++|.+++.+|..+.++++|++|++++|++++ .+|
T Consensus 319 ~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 396 (562)
T 3a79_B 319 FSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVA 396 (562)
T ss_dssp SCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHH
T ss_pred cChhhhhhhhccCcceEEEccCCCcccccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccch
Confidence 331 111 22456777777776643221 2567889999999999988888888899999999999999886 446
Q ss_pred hhhhcCCCCCEEEccCCcCcccCCc-ccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeec
Q 005711 462 DAITKWTNLKYFSIARNKLSGNLPN-WLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNL 540 (681)
Q Consensus 462 ~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~L 540 (681)
..+..+++|++|++++|++++.+|. .+..+++|+.|++++|++++ .+|..+. ++|++|+|
T Consensus 397 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-----------------~~~~~l~--~~L~~L~L 457 (562)
T 3a79_B 397 LMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG-----------------SVFRCLP--PKVKVLDL 457 (562)
T ss_dssp HTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCG-----------------GGGSSCC--TTCSEEEC
T ss_pred hhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCc-----------------chhhhhc--CcCCEEEC
Confidence 6788899999999999999875665 46677778877777776654 4454443 68999999
Q ss_pred CCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCcc-ccCCCCCCeEecccCcceeeCCCCC
Q 005711 541 SFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGN-ISSLQELTLLNLSYNSFSGFVPWKQ 600 (681)
Q Consensus 541 s~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~~~~p~~~ 600 (681)
++|+++ .+|. ++.+++|+.|++++|+++ .+|.. +..+++|+.|++++|++.|.+|..+
T Consensus 458 ~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~ 517 (562)
T 3a79_B 458 HNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPGIR 517 (562)
T ss_dssp CSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHHHH
T ss_pred CCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcchHH
Confidence 999999 5666 779999999999999999 56665 8999999999999999999887543
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=7e-41 Score=379.73 Aligned_cols=505 Identities=20% Similarity=0.168 Sum_probs=394.8
Q ss_pred cccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhc
Q 005711 97 QVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVG 176 (681)
Q Consensus 97 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~ 176 (681)
.+|..+. +.+++|||++|.|++..+.+|+++++|++|||++|++++..|.+|.++++|++|+|++|+ +.+..+..+.
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~ 121 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFS 121 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGT
T ss_pred ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhc
Confidence 4565553 479999999999998888899999999999999999998888899999999999999994 5565667788
Q ss_pred cccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCccc-ccCc---CCcccEEECCCCCCccccchhhccCCC--
Q 005711 177 NFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGN-VHDF---YQSLLVLNLGSNRFSGTLPCFAASAMS-- 250 (681)
Q Consensus 177 ~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~~~~---~~~L~~L~L~~n~l~~~~~~~~~~~~~-- 250 (681)
++ ++|++|++++|.+++..+..|+++++|++|++++|.+++. .|.. +.+|++|++++|++++..+..+..+.+
T Consensus 122 ~L-~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~ 200 (635)
T 4g8a_A 122 GL-SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 200 (635)
T ss_dssp TC-TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred CC-CCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhh
Confidence 88 8999999999999977777899999999999999999764 3443 456999999999999888877766544
Q ss_pred --CCEEEccCCccccCCChhhcccCcccEEecCCCcccccc-CccccCCCCCcEEeccCCCc------cCCCChhhhhcc
Q 005711 251 --LTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEI-SPRLVFFEKLLLLDLSFNDL------SGPLPSKIAQTT 321 (681)
Q Consensus 251 --L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l------~~~~p~~~~~~~ 321 (681)
...++++.|.+....+..+ ....++.+++.+|...... +..+..+..++...+..+.. ....+..+....
T Consensus 201 ~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 279 (635)
T 4g8a_A 201 LLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 279 (635)
T ss_dssp TCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGG
T ss_pred hhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccccccc
Confidence 3478899998886544443 4446778888887655332 33456677777666543322 222222233332
Q ss_pred cCCCccEEEccCCCCcC---CCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCc
Q 005711 322 EKAGLVLLDLSHNRFSG---EIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQL 398 (681)
Q Consensus 322 ~~~~L~~L~Ls~n~l~~---~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L 398 (681)
.+...++..+.... ..+..+....+++.+.+.++.+.... .+.....|+.|++.+|.+.+..+. .+..+
T Consensus 280 ---~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L 351 (635)
T 4g8a_A 280 ---NLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTL---KLKSL 351 (635)
T ss_dssp ---GSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCCC---BCTTC
T ss_pred ---chhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCcc---cchhh
Confidence 45555555443332 23344556788999999999876543 356678899999999988754443 45678
Q ss_pred ceeecccccccccCccccCCCCCccEEEcccCccee--ccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEcc
Q 005711 399 LALIVNNNNLSGEIQPELDALDSLKILDISNNQISG--EIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIA 476 (681)
Q Consensus 399 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 476 (681)
+.+.+..|...... ....+++|+.++++.|.+.. ..+..+..+.+|+.+++..|.... .+..+..+++|+.++++
T Consensus 352 ~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~ 428 (635)
T 4g8a_A 352 KRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQ 428 (635)
T ss_dssp CEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECT
T ss_pred hhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhh
Confidence 89999988876543 34578999999999998864 456667788999999999998874 45567889999999999
Q ss_pred CCcCcccCC-cccccCCccceeecccCccccCCC-------CCcccccCCccc-cccCCcccccccccceeecCCCcCcc
Q 005711 477 RNKLSGNLP-NWLFSFQAIQMMDFSTNKFMGFIP-------DAVGMDLSDNLL-HGTIPKGLFQLQGLEYLNLSFNFLDG 547 (681)
Q Consensus 477 ~n~l~~~~p-~~~~~l~~L~~L~ls~n~~~~~~p-------~~~~L~Ls~N~l-~g~ip~~l~~l~~L~~L~Ls~N~l~~ 547 (681)
.+......+ ..+..+.+++.++++.|.+.+..| ....|++++|++ .+.+|..+..+++|++|+|++|++++
T Consensus 429 ~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~ 508 (635)
T 4g8a_A 429 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 508 (635)
T ss_dssp TSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred hccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCC
Confidence 988776554 456789999999999999877654 346799999985 45678899999999999999999999
Q ss_pred cCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcceeeCCCCCC-C-CCccc-cccCCCCCCC
Q 005711 548 QVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQG-Y-QKFPG-AFAGNPNLCL 617 (681)
Q Consensus 548 ~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~-~-~~~~~-~~~gn~~lc~ 617 (681)
.+|. +.++++|++|+|++|++++..|..|..+++|++||+++|++++..|.... + .++.. .+.|||..|.
T Consensus 509 l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 509 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred cChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 8888 99999999999999999999999999999999999999999998875432 2 23444 7899999995
No 24
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1e-42 Score=375.53 Aligned_cols=400 Identities=23% Similarity=0.284 Sum_probs=189.2
Q ss_pred ccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCC
Q 005711 102 LCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMN 181 (681)
Q Consensus 102 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~ 181 (681)
-.+.++|++|++++|.+ +.+|.+++++++|++|++++|.+.|.+|.+++++++|+++++..|.. .+
T Consensus 7 ~~~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-------------~~ 72 (454)
T 1jl5_A 7 NVSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-------------RQ 72 (454)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-------------HT
T ss_pred ccccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-------------cC
Confidence 33567899999999999 78999999999999999999999999999999998886666655511 45
Q ss_pred ccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCcc
Q 005711 182 LEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSV 261 (681)
Q Consensus 182 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 261 (681)
+++|++++|.+++ +|.. .++|++|++++|.+++ +|..+.+|++|++++|++++ ++.. .++|++|++++|++
T Consensus 73 l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l 143 (454)
T 1jl5_A 73 AHELELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQL 143 (454)
T ss_dssp CSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCC
T ss_pred CCEEEecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCC
Confidence 6667777766663 3331 2566666666666665 44445556666666666653 2211 14566666666666
Q ss_pred ccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCc
Q 005711 262 VGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIP 341 (681)
Q Consensus 262 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p 341 (681)
++ +| .++.+++|++|++++|++++ +|..+ ++|++|++++|.+++ +| .+..+. +|+.|++++|++++ +|
T Consensus 144 ~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~---~L~~L~l~~N~l~~-l~ 211 (454)
T 1jl5_A 144 EK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLP---FLTAIYADNNSLKK-LP 211 (454)
T ss_dssp SS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCT---TCCEEECCSSCCSS-CC
T ss_pred CC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCC---CCCEEECCCCcCCc-CC
Confidence 54 44 35666666666666666553 33322 356666666666554 33 233333 56666666666553 33
Q ss_pred ccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCC
Q 005711 342 LKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDS 421 (681)
Q Consensus 342 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 421 (681)
.. .++|++|++++|.++ .+|. ++.+++|++|++++|++++ +|.. .++|+.|++++|.+.+ +|.. .++
T Consensus 212 ~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~ 278 (454)
T 1jl5_A 212 DL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQS 278 (454)
T ss_dssp CC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTT
T ss_pred CC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCc
Confidence 22 135666666666555 3442 5556666666666665553 3321 2455555555555554 2221 245
Q ss_pred ccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcC-CCCCEEEccCCcCcccCCcccccCCccceeecc
Q 005711 422 LKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKW-TNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFS 500 (681)
Q Consensus 422 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls 500 (681)
|+.|++++|.+++. |.. .++|++|++++|++++ ++ .+ ++|++|++++|++++ +|.. +++|+.|+++
T Consensus 279 L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~ 345 (454)
T 1jl5_A 279 LTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIAS 345 (454)
T ss_dssp CCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECC
T ss_pred CCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECC
Confidence 55555555555541 110 1455555555555553 11 12 355555555555553 3332 2444444444
Q ss_pred cCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcc--cCCC-cCCCCCCCEEECCCCcCcccCCcccc
Q 005711 501 TNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDG--QVPG-LYRLRSLRALDLSHNSLTGQIPGNIS 577 (681)
Q Consensus 501 ~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~--~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~ 577 (681)
+|+++ .+|. .+++|++|++++|++++ .+|. +.. ++.|.+.|.+|..
T Consensus 346 ~N~l~------------------~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~-- 394 (454)
T 1jl5_A 346 FNHLA------------------EVPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL-- 394 (454)
T ss_dssp SSCCS------------------CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC----------
T ss_pred CCccc------------------cccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc--
Confidence 44433 3343 24566666666666665 3443 221 2234455555542
Q ss_pred CCCCCCeEecccCccee
Q 005711 578 SLQELTLLNLSYNSFSG 594 (681)
Q Consensus 578 ~l~~L~~L~ls~N~l~~ 594 (681)
+++|++|++++|++++
T Consensus 395 -~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 395 -PQNLKQLHVETNPLRE 410 (454)
T ss_dssp -----------------
T ss_pred -cCcCCEEECCCCcCCc
Confidence 2556666666666665
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=8.1e-42 Score=380.99 Aligned_cols=437 Identities=20% Similarity=0.214 Sum_probs=310.3
Q ss_pred CCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEee
Q 005711 81 TGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELI 160 (681)
Q Consensus 81 ~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 160 (681)
..+++.|++++|.+.+..+..+.++++|++|+|++|.+++..|..|+++++|++|||++|+++ .+|.. .+++|++|+
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD 127 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence 368999999999999888889999999999999999999999999999999999999999999 67766 899999999
Q ss_pred CCCCCCCCccCCchhccccCCccEEEccCCcCccccCccccCCCCC--CEEEccCccC--cccccCcCCccc----EEEC
Q 005711 161 LKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSL--KHLDLEKNNL--TGNVHDFYQSLL----VLNL 232 (681)
Q Consensus 161 L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L--~~L~L~~n~l--~~~~~~~~~~L~----~L~L 232 (681)
+++|++....+|..++++ ++|++|++++|.+++. .+..+++| ++|++++|.+ ++..+..+..++ .+++
T Consensus 128 Ls~N~l~~l~~p~~~~~l-~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l 203 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNL-TKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203 (562)
T ss_dssp CCSSCCSBCCCCGGGGGC-TTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEE
T ss_pred CCCCCccccCchHhhccc-CcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEe
Confidence 999966554678899999 8999999999999863 34555555 9999999999 888888776644 6688
Q ss_pred CCCCCccccch-hhccCCCCCEEEccCCc-----cccCCChhhcccCcccEEecCCCccccccCcc---ccCCCCCcEEe
Q 005711 233 GSNRFSGTLPC-FAASAMSLTVLKLDNNS-----VVGGIPTCIASLQALTHLNLSHNHLNYEISPR---LVFFEKLLLLD 303 (681)
Q Consensus 233 ~~n~l~~~~~~-~~~~~~~L~~L~L~~n~-----l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~---l~~l~~L~~L~ 303 (681)
++|.+.+.++. .+..+++|+.+++++|+ +.+ ....+..+++|+.+++.++.+.+..... ....++|++|+
T Consensus 204 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~-~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~ 282 (562)
T 3a79_B 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT-FLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN 282 (562)
T ss_dssp CSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH-HHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEE
T ss_pred cCccchhhhhhhcccccceEEEecccccccccchHHH-HHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEE
Confidence 89988876654 45678899999999985 222 2345778899999999887766432111 11234777777
Q ss_pred ccCCCccCCCChhhhhc--ccCCCccEEEccCCCCcCCCc-ccccC---CCCCCEEeccCCccccccccccCCCCCCCEE
Q 005711 304 LSFNDLSGPLPSKIAQT--TEKAGLVLLDLSHNRFSGEIP-LKITE---LKSLQALFLSNNLLIGEIPARIGNLTYLQVI 377 (681)
Q Consensus 304 L~~n~l~~~~p~~~~~~--~~~~~L~~L~Ls~n~l~~~~p-~~l~~---l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 377 (681)
+++|.++|.+|..+... ..++.|+.++++.+.+ .+| ..+.. ..+|++|++++|.+.... ....+++|++|
T Consensus 283 l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L 358 (562)
T 3a79_B 283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFL 358 (562)
T ss_dssp EEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEE
T ss_pred EeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEE
Confidence 77777777777655211 2122444555555544 233 11111 134566666665543221 11344555555
Q ss_pred EccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCccee--ccccccCCCCCCcEEECCCCc
Q 005711 378 DLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISG--EIPLTLAGLKSLEIVDFSSNN 455 (681)
Q Consensus 378 ~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~L~~n~ 455 (681)
++++|.+++ .+|..+..+++|+.|++++|++++ .+|..+.++++|++|++++|+
T Consensus 359 ~l~~n~l~~------------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 359 NFTQNVFTD------------------------SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414 (562)
T ss_dssp ECCSSCCCT------------------------TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred ECCCCcccc------------------------chhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc
Confidence 555555554 444445556666666666666664 234556666777777777777
Q ss_pred CCCcchh-hhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccc
Q 005711 456 LSGSLND-AITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQG 534 (681)
Q Consensus 456 l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~ 534 (681)
+++.+|. .+..+++|++|++++|++++.+|..+. ++|+.|++++|+++ .+|..++.+++
T Consensus 415 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~------------------~ip~~~~~l~~ 474 (562)
T 3a79_B 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM------------------SIPKDVTHLQA 474 (562)
T ss_dssp CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC------------------CCCTTTTSSCC
T ss_pred CCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc------------------ccChhhcCCCC
Confidence 7663443 356667777777777777665554432 45666665555544 67777788999
Q ss_pred cceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCC
Q 005711 535 LEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIP 573 (681)
Q Consensus 535 L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p 573 (681)
|++|+|++|++++..+. +..+++|+.|++++|.+++..|
T Consensus 475 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 475 LQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 99999999999954444 8889999999999999997665
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.1e-41 Score=367.41 Aligned_cols=421 Identities=24% Similarity=0.255 Sum_probs=255.5
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeC
Q 005711 82 GHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELIL 161 (681)
Q Consensus 82 ~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 161 (681)
.++++|+++++.+ |.+|++++++++|++|++++|.+.|.+|..++++++|++++++.|.. .++++|++
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~l 78 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELEL 78 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEEC
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEEe
Confidence 5788999999999 89999999999999999999999999999999999874444443321 33445555
Q ss_pred CCCCCCCccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCcccc
Q 005711 162 KGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTL 241 (681)
Q Consensus 162 ~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~ 241 (681)
++|.+ ++ +|.. .++|++|++++|.+++ +|.. .++|++|++++|.+++. +....+|++|++++|++++ +
T Consensus 79 ~~~~l-~~-lp~~----~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~~~~L~~L~L~~n~l~~-l 146 (454)
T 1jl5_A 79 NNLGL-SS-LPEL----PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDLPPLLEYLGVSNNQLEK-L 146 (454)
T ss_dssp TTSCC-SC-CCSC----CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSCCTTCCEEECCSSCCSS-C
T ss_pred cCCcc-cc-CCCC----cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCCCCCCCEEECcCCCCCC-C
Confidence 55422 11 2221 1456666666666654 4432 25666666666666652 2223567777777777775 6
Q ss_pred chhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcc
Q 005711 242 PCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTT 321 (681)
Q Consensus 242 ~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~ 321 (681)
| .++.+++|++|++++|++++ +|..+ .+|++|++++|.+++ +| .+..+++|+.|++++|.+++ +|...
T Consensus 147 p-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---- 214 (454)
T 1jl5_A 147 P-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---- 214 (454)
T ss_dssp C-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC----
T ss_pred c-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc----
Confidence 6 58888999999999998885 55543 589999999999886 55 68889999999999999885 44322
Q ss_pred cCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCccee
Q 005711 322 EKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLAL 401 (681)
Q Consensus 322 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L 401 (681)
++|+.|++++|.++ .+| .++.+++|++|++++|++++ +|.. .++|++|++++|.+++ +|.. .++|+.|
T Consensus 215 --~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L 282 (454)
T 1jl5_A 215 --LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFL 282 (454)
T ss_dssp --TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEE
T ss_pred --CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEE
Confidence 27999999999998 677 48889999999999999885 4442 4789999999999986 5543 3789999
Q ss_pred ecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCc
Q 005711 402 IVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLS 481 (681)
Q Consensus 402 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 481 (681)
++++|.+++.. . ..++|+.|++++|.+++. +. ..++|++|++++|++++ +|.. +++|++|++++|+++
T Consensus 283 ~ls~N~l~~l~-~---~~~~L~~L~l~~N~l~~i-~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~ 350 (454)
T 1jl5_A 283 DVSENIFSGLS-E---LPPNLYYLNASSNEIRSL-CD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA 350 (454)
T ss_dssp ECCSSCCSEES-C---CCTTCCEEECCSSCCSEE-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred ECcCCccCccc-C---cCCcCCEEECcCCcCCcc-cC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc
Confidence 99999988731 1 126899999999999862 21 12589999999999986 5543 589999999999998
Q ss_pred ccCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCCcCCCCCCCEE
Q 005711 482 GNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRAL 561 (681)
Q Consensus 482 ~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L 561 (681)
.+|. .+++|+.|++++|++++. | .+|..+.. ++.|.+.|.+|.. +++|+.|
T Consensus 351 -~lp~---~l~~L~~L~L~~N~l~~l-~--------------~ip~~l~~--------L~~n~~~~~i~~~--~~~L~~L 401 (454)
T 1jl5_A 351 -EVPE---LPQNLKQLHVEYNPLREF-P--------------DIPESVED--------LRMNSHLAEVPEL--PQNLKQL 401 (454)
T ss_dssp -CCCC---CCTTCCEEECCSSCCSSC-C--------------CCCTTCCE--------EECCC-----------------
T ss_pred -cccc---hhhhccEEECCCCCCCcC-C--------------CChHHHHh--------hhhcccccccccc--cCcCCEE
Confidence 4666 467888888888877651 1 34444432 2345666666652 4678888
Q ss_pred ECCCCcCcc--cCCccccCCCCCCeEecccCcceeeCC
Q 005711 562 DLSHNSLTG--QIPGNISSLQELTLLNLSYNSFSGFVP 597 (681)
Q Consensus 562 ~Ls~N~l~~--~~p~~l~~l~~L~~L~ls~N~l~~~~p 597 (681)
|+++|++++ .+|.+ ++.|.+.+|.+.+.+|
T Consensus 402 ~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~~~ 433 (454)
T 1jl5_A 402 HVETNPLREFPDIPES------VEDLRMNSERVVDPYE 433 (454)
T ss_dssp --------------------------------------
T ss_pred ECCCCcCCccccchhh------HhheeCcCcccCCccc
Confidence 888888876 55543 4556677888777765
No 27
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=8e-41 Score=343.74 Aligned_cols=291 Identities=31% Similarity=0.504 Sum_probs=209.2
Q ss_pred CCHHhHHHHHHHHhcCCCCCCCCCCC-CCCCCCC--CCceeecCCC--CcEEEEEcCCCCCcc--cccccccCCCCCCEE
Q 005711 39 LNLEDKASLLLFKSLVQDPTQKLSSW-VGSNCTN--WTGVACNFQT--GHVVSINLTDTSLSG--QVHPRLCKLSFLEFL 111 (681)
Q Consensus 39 ~~~~~~~~l~~~~~~~~~~~~~~~~w-~~~~cc~--w~gv~c~~~~--~~v~~L~L~~~~l~g--~~~~~l~~l~~L~~L 111 (681)
+..+|++||++||+++.+|. .+++| .+.+||. |.||.|+... ++|++|+|+++.+.| .+|..+.++++|++|
T Consensus 3 c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L 81 (313)
T 1ogq_A 3 CNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFL 81 (313)
T ss_dssp SCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEE
T ss_pred CCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCee
Confidence 34567779999999998875 78899 4678998 9999998544 899999999999999 899999999999999
Q ss_pred ECCC-CcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCC
Q 005711 112 VLSS-NAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFN 190 (681)
Q Consensus 112 ~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n 190 (681)
++++ |.+.+.+|..|+++++|++|++++|++++.+|..|.++++|++|++++| .+.+.+|..+..+ ++|++|++++|
T Consensus 82 ~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l-~~L~~L~L~~N 159 (313)
T 1ogq_A 82 YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPPSISSL-PNLVGITFDGN 159 (313)
T ss_dssp EEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSS-EEESCCCGGGGGC-TTCCEEECCSS
T ss_pred eCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCC-ccCCcCChHHhcC-CCCCeEECcCC
Confidence 9995 8999999999999999999999999999899999999999999999888 4566777777777 78888888888
Q ss_pred cCccccCccccCCC-CCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhh
Q 005711 191 SFCGEIPESLYYLK-SLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCI 269 (681)
Q Consensus 191 ~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l 269 (681)
.+++.+|..+..++ +|++|++++|.+++ .+|..+..++ |++|++++|.+++..|..+
T Consensus 160 ~l~~~~p~~l~~l~~~L~~L~L~~N~l~~---------------------~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~ 217 (313)
T 1ogq_A 160 RISGAIPDSYGSFSKLFTSMTISRNRLTG---------------------KIPPTFANLN-LAFVDLSRNMLEGDASVLF 217 (313)
T ss_dssp CCEEECCGGGGCCCTTCCEEECCSSEEEE---------------------ECCGGGGGCC-CSEEECCSSEEEECCGGGC
T ss_pred cccCcCCHHHhhhhhcCcEEECcCCeeec---------------------cCChHHhCCc-ccEEECcCCcccCcCCHHH
Confidence 88777777777776 67776666655543 3444444444 6666666666665555556
Q ss_pred cccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCC
Q 005711 270 ASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKS 349 (681)
Q Consensus 270 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~ 349 (681)
..+++|++|++++|.+++.++. +..+++ |++|++++|++++.+|..+..+++
T Consensus 218 ~~l~~L~~L~L~~N~l~~~~~~-~~~l~~---------------------------L~~L~Ls~N~l~~~~p~~l~~l~~ 269 (313)
T 1ogq_A 218 GSDKNTQKIHLAKNSLAFDLGK-VGLSKN---------------------------LNGLDLRNNRIYGTLPQGLTQLKF 269 (313)
T ss_dssp CTTSCCSEEECCSSEECCBGGG-CCCCTT---------------------------CCEEECCSSCCEECCCGGGGGCTT
T ss_pred hcCCCCCEEECCCCceeeecCc-ccccCC---------------------------CCEEECcCCcccCcCChHHhcCcC
Confidence 6666666666666655543333 333444 444444444444444444555555
Q ss_pred CCEEeccCCccccccccccCCCCCCCEEEccCCc
Q 005711 350 LQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNM 383 (681)
Q Consensus 350 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 383 (681)
|++|++++|+++|.+|.. ..+++|+.+++++|.
T Consensus 270 L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 270 LHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred CCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 555555555555555443 445555555555554
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.4e-39 Score=351.86 Aligned_cols=368 Identities=20% Similarity=0.158 Sum_probs=232.3
Q ss_pred CCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcC-CccccCCCCCCEeeCCCCCCCCccCCchhccccCCccE
Q 005711 106 SFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVV-PDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEK 184 (681)
Q Consensus 106 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~ 184 (681)
++|++|+|++|.+++..|..|+++++|++|++++|.+.+.+ |..|.++++|++|++++| .+.+..|..++++ ++|++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l-~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAFNGL-ANLEV 107 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTTTTC-TTCCE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC-ccCccChhhccCc-ccCCE
Confidence 78999999999999888999999999999999999987555 567889999999999988 4566677778888 78888
Q ss_pred EEccCCcCccccCcc--ccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchh-hccCCCCCEEEccCCcc
Q 005711 185 LDFSFNSFCGEIPES--LYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCF-AASAMSLTVLKLDNNSV 261 (681)
Q Consensus 185 L~L~~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~~~~L~~L~L~~n~l 261 (681)
|++++|.+++.+|.. +.++++|++|++++|.+++.. |.. +..+++|++|++++|.+
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~---------------------~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ---------------------PASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCC---------------------CCGGGGGCTTCCEEECTTCCB
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccC---------------------cccccCCCCcccEEeCCCCcc
Confidence 888888887755544 777888888888777766443 333 55666777777777777
Q ss_pred ccCCChhhccc--CcccEEecCCCccccccCcc--------ccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEc
Q 005711 262 VGGIPTCIASL--QALTHLNLSHNHLNYEISPR--------LVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDL 331 (681)
Q Consensus 262 ~~~~p~~l~~l--~~L~~L~L~~n~l~~~~~~~--------l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~L 331 (681)
++..+..+..+ .+|+.|++++|.+.+..+.. +..+++|++|++++|.+++..|..+.......+|+.|++
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 66666666555 56677777777666443332 234567778888888777777776666544457788888
Q ss_pred cCCCCcCCCcccccCCCCCCEEeccCCccccccccccC--CCCCCCEEEccCCcCccccCcccccCCCcceeeccccccc
Q 005711 332 SHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIG--NLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLS 409 (681)
Q Consensus 332 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~ 409 (681)
++|.+.+.... .+.+.+..+..+. ..++|++|++++|.+.+..|..+..+++|++|++++|.+.
T Consensus 247 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 312 (455)
T 3v47_A 247 SNSYNMGSSFG--------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN 312 (455)
T ss_dssp TTCTTTSCCTT--------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred ccccccccccc--------------hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccc
Confidence 77765542110 0011111111111 1234455555555554444444444555555555555555
Q ss_pred ccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccc
Q 005711 410 GEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLF 489 (681)
Q Consensus 410 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 489 (681)
+..+..+..+++|+.|++++|.+++..|..+.++++|++|++++|++++..|..+..+++|++|++++|++++..+..+.
T Consensus 313 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 392 (455)
T 3v47_A 313 KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD 392 (455)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred ccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhc
Confidence 44444555555555555555555555555555555555555555555555555555555555555555555544444445
Q ss_pred cCCccceeecccCccccCCCC
Q 005711 490 SFQAIQMMDFSTNKFMGFIPD 510 (681)
Q Consensus 490 ~l~~L~~L~ls~n~~~~~~p~ 510 (681)
.+++|+.|++++|++++..|.
T Consensus 393 ~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 393 RLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp TCTTCCEEECCSSCBCCCTTT
T ss_pred cCCcccEEEccCCCcccCCCc
Confidence 555555555555555555553
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.1e-40 Score=357.89 Aligned_cols=378 Identities=20% Similarity=0.219 Sum_probs=252.5
Q ss_pred cEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcC---CcccEEECCCCCCcccc-chhhccCCCCCEEEccC
Q 005711 183 EKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFY---QSLLVLNLGSNRFSGTL-PCFAASAMSLTVLKLDN 258 (681)
Q Consensus 183 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~---~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~L~~ 258 (681)
+.++.+++.++ .+|. + .++|++|++++|.+++..+..+ .+|++|++++|.+.+.+ +..+..+++|++|++++
T Consensus 13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 45666777666 5555 2 2677777777777776655443 33666666666665444 34566666666666666
Q ss_pred CccccCCChhhcccCcccEEecCCCccccccCcc--ccCCCCCcEEeccCCCccCCCChh-hhhcccCCCccEEEccCCC
Q 005711 259 NSVVGGIPTCIASLQALTHLNLSHNHLNYEISPR--LVFFEKLLLLDLSFNDLSGPLPSK-IAQTTEKAGLVLLDLSHNR 335 (681)
Q Consensus 259 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~p~~-~~~~~~~~~L~~L~Ls~n~ 335 (681)
|++++..|..++++++|++|++++|.+++..+.. +..+++|++|++++|.+++..|.. +..+. +|++|++++|.
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~---~L~~L~L~~n~ 165 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR---RFHVLDLTFNK 165 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT---TCCEEECTTCC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC---cccEEeCCCCc
Confidence 6666666666666666666666666666544333 566666666666666666555544 44444 56666666666
Q ss_pred CcCCCcccccCC--CCCCEEeccCCccccccccc--------cCCCCCCCEEEccCCcCccccCcccccC---CCcceee
Q 005711 336 FSGEIPLKITEL--KSLQALFLSNNLLIGEIPAR--------IGNLTYLQVIDLSHNMLSGSIPLNIVGC---FQLLALI 402 (681)
Q Consensus 336 l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~~~~--------l~~l~~L~~L~Ls~n~l~~~~p~~~~~~---~~L~~L~ 402 (681)
+++..|..+..+ .+|+.|++++|.+.+..+.. +..+++|++|++++|.+++..|..+... .+++.++
T Consensus 166 l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ 245 (455)
T 3v47_A 166 VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245 (455)
T ss_dssp BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEE
T ss_pred ccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEe
Confidence 666555555443 45666666666665443322 2244556666666666665555544332 4555555
Q ss_pred cccccccccCccccCCCCCccEEEcccCcceeccccccC--CCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcC
Q 005711 403 VNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLA--GLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKL 480 (681)
Q Consensus 403 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 480 (681)
+++|...+... ..+.+.+..+..+. ..++|++|++++|.+++..|..+..+++|++|++++|++
T Consensus 246 l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 311 (455)
T 3v47_A 246 LSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI 311 (455)
T ss_dssp CTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred ecccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcc
Confidence 55554433211 01111111112222 236788888888888877788888888888888888888
Q ss_pred cccCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCC
Q 005711 481 SGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLR 559 (681)
Q Consensus 481 ~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~ 559 (681)
.+..|..+..+++|+.|++++|++. +..|..+.++++|++|+|++|++++..|. +..+++|+
T Consensus 312 ~~~~~~~~~~l~~L~~L~Ls~N~l~-----------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 374 (455)
T 3v47_A 312 NKIDDNAFWGLTHLLKLNLSQNFLG-----------------SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK 374 (455)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCC-----------------EECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred cccChhHhcCcccCCEEECCCCccC-----------------CcChhHhcCcccCCEEECCCCcccccChhhcccccccc
Confidence 8777777777788877777766554 35577788899999999999999988887 89999999
Q ss_pred EEECCCCcCcccCCccccCCCCCCeEecccCcceeeCCC
Q 005711 560 ALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPW 598 (681)
Q Consensus 560 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 598 (681)
+|++++|++++..+..+..+++|++|++++|+++|.+|.
T Consensus 375 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 375 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred EEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 999999999987777889999999999999999999984
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.9e-38 Score=340.11 Aligned_cols=375 Identities=19% Similarity=0.168 Sum_probs=249.0
Q ss_pred cccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCch
Q 005711 95 SGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGW 174 (681)
Q Consensus 95 ~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~ 174 (681)
.+..+..++++++|++|++++|.+++. | .++.+++|++|++++|++++. | ++.+++|++|++++|++ .+ +|
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l-~~-~~-- 101 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKL-TN-LD-- 101 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCC-SC-CC--
T ss_pred CcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCC-ce-ee--
Confidence 344455678889999999999998874 5 588899999999999998864 4 88888888888888853 33 23
Q ss_pred hccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEE
Q 005711 175 VGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVL 254 (681)
Q Consensus 175 l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 254 (681)
++++ ++|++|++++|.+++ +| ++.+++|++|++++|.+++.. ++.+++|++|
T Consensus 102 ~~~l-~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l~------------------------l~~l~~L~~L 153 (457)
T 3bz5_A 102 VTPL-TKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEID------------------------VSHNTQLTEL 153 (457)
T ss_dssp CTTC-TTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCCC------------------------CTTCTTCCEE
T ss_pred cCCC-CcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccceec------------------------cccCCcCCEE
Confidence 6666 788888888888875 44 777888888888877776532 3344555555
Q ss_pred EccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCC
Q 005711 255 KLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHN 334 (681)
Q Consensus 255 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n 334 (681)
++++|+..+.+ .++.+++|++|++++|++++ +| +..+++|+.|++++|.+++. .+..+ ++|+.|++++|
T Consensus 154 ~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l---~~L~~L~Ls~N 222 (457)
T 3bz5_A 154 DCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQN---IQLTFLDCSSN 222 (457)
T ss_dssp ECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTC---TTCSEEECCSS
T ss_pred ECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccC---CCCCEEECcCC
Confidence 55555443333 24555666666666666554 22 55566666666666666543 13333 36777777777
Q ss_pred CCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCcc
Q 005711 335 RFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQP 414 (681)
Q Consensus 335 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~ 414 (681)
++++ +| +..+++|++|++++|++++.. ++.+++|+.|++++|. |+.+++++|.+.+.+|
T Consensus 223 ~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~--------------L~~L~l~~n~~~~~~~- 281 (457)
T 3bz5_A 223 KLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTD--------------LLEIDLTHNTQLIYFQ- 281 (457)
T ss_dssp CCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCC--------------CSCCCCTTCTTCCEEE-
T ss_pred cccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCC--------------CCEEECCCCccCCccc-
Confidence 7765 44 566677777777777776543 3455666777666543 3456666666666655
Q ss_pred ccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCcc
Q 005711 415 ELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAI 494 (681)
Q Consensus 415 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 494 (681)
+..+++|+.|++++|...+.+|. ..++|+.|++++| ++|++|++++|++++ ++ +..+++|
T Consensus 282 -~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~-l~--l~~l~~L 341 (457)
T 3bz5_A 282 -AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTE-LD--VSHNTKL 341 (457)
T ss_dssp -CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSC-CC--CTTCTTC
T ss_pred -ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCcccc-cc--cccCCcC
Confidence 35667777777777777666664 3345555555544 567778888887776 33 6777778
Q ss_pred ceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCC-CCCCCEEECC
Q 005711 495 QMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYR-LRSLRALDLS 564 (681)
Q Consensus 495 ~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~-l~~L~~L~Ls 564 (681)
+.|++++|++++ +|....|++++|.++|. .++..|+.+++++|+++|.+|. +.. ..++....-+
T Consensus 342 ~~L~l~~N~l~~-l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~~~~~~ 407 (457)
T 3bz5_A 342 KSLSCVNAHIQD-FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPG 407 (457)
T ss_dssp SEEECCSSCCCB-CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBCTTSCCCEEEES
T ss_pred cEEECCCCCCCC-ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhcccCceeeccCC
Confidence 888888877776 56666777777777765 3566778888888888888876 332 3344444433
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.6e-37 Score=335.26 Aligned_cols=353 Identities=18% Similarity=0.171 Sum_probs=225.4
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeC
Q 005711 82 GHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELIL 161 (681)
Q Consensus 82 ~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 161 (681)
.+++.|+++++.+.+. | .+..+++|++|++++|.+++. | ++.+++|++|++++|.+++. | ++++++|++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEEC
Confidence 4789999999999975 4 799999999999999999985 4 89999999999999999975 4 899999999999
Q ss_pred CCCCCCCccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCcccc-cCcCCcccEEECCCCCCccc
Q 005711 162 KGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNV-HDFYQSLLVLNLGSNRFSGT 240 (681)
Q Consensus 162 ~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~L~~L~L~~n~l~~~ 240 (681)
++|++ .+ +| ++++ ++|++|++++|.+++ ++ ++++++|++|++++|...+.+ ...+.+|++|++++|++++
T Consensus 114 ~~N~l-~~-l~--~~~l-~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~- 184 (457)
T 3bz5_A 114 DTNKL-TK-LD--VSQN-PLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE- 184 (457)
T ss_dssp CSSCC-SC-CC--CTTC-TTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-
T ss_pred CCCcC-Ce-ec--CCCC-CcCCEEECCCCccce-ec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-
Confidence 99954 43 44 7778 899999999999996 33 889999999999999544332 2234456666666666655
Q ss_pred cchhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhc
Q 005711 241 LPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQT 320 (681)
Q Consensus 241 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~ 320 (681)
+| +..+++|+.|++++|++++. .++.+++|++|++++|++++ +| +..+++|+.|++++|.+++..+ ..+
T Consensus 185 l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~---~~l 253 (457)
T 3bz5_A 185 LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV---STL 253 (457)
T ss_dssp CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC---TTC
T ss_pred ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCH---HHC
Confidence 23 55556666666666666543 25555666666666666654 33 5555566666666665554321 112
Q ss_pred ccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcce
Q 005711 321 TEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLA 400 (681)
Q Consensus 321 ~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~ 400 (681)
. +|+.|+++.| +|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|. ...+|+.
T Consensus 254 ~---~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~ 311 (457)
T 3bz5_A 254 S---KLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITE 311 (457)
T ss_dssp T---TCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSC
T ss_pred C---CCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceE
Confidence 2 4555555443 34445556666555554 34556666666666665555553 2233333
Q ss_pred eecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcC
Q 005711 401 LIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKL 480 (681)
Q Consensus 401 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 480 (681)
+++++ +++|+.|++++|++++. + ++++++|+.|++++|++++ ++.|..|++++|.+
T Consensus 312 L~l~~-------------~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l 367 (457)
T 3bz5_A 312 LDLSQ-------------NPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNF 367 (457)
T ss_dssp CCCTT-------------CTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSE
T ss_pred echhh-------------cccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcE
Confidence 33322 24555555555555542 2 5555555555555555553 13344444555555
Q ss_pred cccCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCcccc
Q 005711 481 SGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLF 530 (681)
Q Consensus 481 ~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~ 530 (681)
.|. ..+..|. .+|+++|+++|.||..+.
T Consensus 368 ~g~-----~~~~~l~-----------------~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 368 EAE-----GQTITMP-----------------KETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp EEE-----EEEEECC-----------------CBCCBTTBEEEECCTTCB
T ss_pred Eec-----ceeeecC-----------------ccccccCcEEEEcChhHh
Confidence 443 1222333 456666666666666543
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-36 Score=332.09 Aligned_cols=326 Identities=20% Similarity=0.151 Sum_probs=212.6
Q ss_pred cccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEE
Q 005711 274 ALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQAL 353 (681)
Q Consensus 274 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 353 (681)
+++.|++++|.+++..+..+..+++|++|++++|.+++..|..+..+. +|++|++++|++++..+..|..+++|++|
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~---~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF---NLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT---TCCEEECCSSCCCSCCTTSSTTCTTCCEE
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCc---cCCEEECCCCcCCccCcccccCCCCCCEE
Confidence 455555555555544444555555555555555555544444444444 55555555555554444445556666666
Q ss_pred eccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcce
Q 005711 354 FLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQIS 433 (681)
Q Consensus 354 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 433 (681)
++++|.+.+..+..+.++++|++|++++|.+.+..+..+.++++|+.|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred ECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence 66666666555556666666666666666666655666666666666666666666555555666777777777777777
Q ss_pred eccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccCCCCCcc
Q 005711 434 GEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVG 513 (681)
Q Consensus 434 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~ 513 (681)
+..+..+..+++|++|++++|...+.++.......+|++|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------- 262 (477)
T 2id5_A 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST------- 262 (477)
T ss_dssp EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCE-------
T ss_pred EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCc-------
Confidence 6666667777777777777777666666655555677777777777764333456666667666666665542
Q ss_pred cccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcc
Q 005711 514 MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSF 592 (681)
Q Consensus 514 L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 592 (681)
..+..+..+++|++|+|++|++++..|. +..+++|+.|++++|++++..+..|..+++|+.|++++|++
T Consensus 263 ----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 263 ----------IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp ----------ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred ----------cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 4455677788888888888888887777 88888888888888888877777788888888899999988
Q ss_pred eeeCCCCCCCCCccc-cccCCCCCCCCC
Q 005711 593 SGFVPWKQGYQKFPG-AFAGNPNLCLES 619 (681)
Q Consensus 593 ~~~~p~~~~~~~~~~-~~~gn~~lc~~~ 619 (681)
.|.++..|.+..... .+.++...|..|
T Consensus 333 ~c~c~~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 333 ACDCRLLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp ECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred cCccchHhHHhhhhccccCccCceeCCc
Confidence 887764443332222 455666666544
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5e-35 Score=318.25 Aligned_cols=344 Identities=25% Similarity=0.309 Sum_probs=222.9
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeC
Q 005711 82 GHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELIL 161 (681)
Q Consensus 82 ~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 161 (681)
.+++.|+++++.+.. ++ .+..+++|++|++++|.+++..+ ++++++|++|++++|.+.+..| ++++++|++|++
T Consensus 46 ~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L 119 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119 (466)
T ss_dssp HTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred ccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence 368888888888764 33 47888999999999998887654 8889999999999998886544 888999999999
Q ss_pred CCCCCCCccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCcccc
Q 005711 162 KGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTL 241 (681)
Q Consensus 162 ~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~ 241 (681)
++|.+ .+ ++. +.++ ++|++|++++|.+.+ ++ .+..+++|++|+++ |.+.+..
T Consensus 120 ~~n~l-~~-~~~-~~~l-~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~--------------------- 171 (466)
T 1o6v_A 120 FNNQI-TD-IDP-LKNL-TNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK--------------------- 171 (466)
T ss_dssp CSSCC-CC-CGG-GTTC-TTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG---------------------
T ss_pred CCCCC-CC-ChH-HcCC-CCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCch---------------------
Confidence 98843 33 333 6777 788888888888874 33 47888888888886 3333221
Q ss_pred chhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcc
Q 005711 242 PCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTT 321 (681)
Q Consensus 242 ~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~ 321 (681)
.+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+ ++.+++|+.|++++|.+++. + .+..+
T Consensus 172 --~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~l~~l- 242 (466)
T 1o6v_A 172 --PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-G-TLASL- 242 (466)
T ss_dssp --GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-G-GGGGC-
T ss_pred --hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-h-hhhcC-
Confidence 144555555555555555432 235555566666666665554333 44556666666666655532 1 22222
Q ss_pred cCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCccee
Q 005711 322 EKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLAL 401 (681)
Q Consensus 322 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L 401 (681)
++|+.|++++|.+++..| +..+++|++|++++|.+++..+ +..+++|++|++++|.+.+..+ +..+++|+.|
T Consensus 243 --~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 314 (466)
T 1o6v_A 243 --TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYL 314 (466)
T ss_dssp --TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEE
T ss_pred --CCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEE
Confidence 256666666666664433 5556666666666666654433 5566666666666666665433 5566666666
Q ss_pred ecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCc
Q 005711 402 IVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLS 481 (681)
Q Consensus 402 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 481 (681)
++++|.+.+..+ +..+++|+.|++++|.+++. ..+..+++|++|++++|++++..| +..+++|++|++++|.++
T Consensus 315 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 315 TLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp ECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred ECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence 666666665544 45666677777777766654 356666777777777777766555 566677777777777666
Q ss_pred c
Q 005711 482 G 482 (681)
Q Consensus 482 ~ 482 (681)
+
T Consensus 389 ~ 389 (466)
T 1o6v_A 389 N 389 (466)
T ss_dssp C
T ss_pred C
Confidence 4
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=8.2e-35 Score=316.56 Aligned_cols=347 Identities=24% Similarity=0.332 Sum_probs=293.7
Q ss_pred CCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCcc
Q 005711 104 KLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLE 183 (681)
Q Consensus 104 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~ 183 (681)
.++++++|+++++.+.. +|. +..+++|++|++++|.+++..| +.++++|++|++++|.+ .+. +. ++++ ++|+
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l-~~~-~~-~~~l-~~L~ 115 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-IDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI-ADI-TP-LANL-TNLT 115 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC-CCC-GG-GTTC-TTCC
T ss_pred HhccccEEecCCCCCcc-Ccc-hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCcc-ccC-hh-hcCC-CCCC
Confidence 45789999999999875 453 8889999999999999986544 99999999999999944 333 33 7788 8999
Q ss_pred EEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCcccc
Q 005711 184 KLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVG 263 (681)
Q Consensus 184 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 263 (681)
+|++++|.+++. +. +.++++|++|++++|.+++ ++ .+..+++|++|+++ +.+.+
T Consensus 116 ~L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~----------------------~~-~~~~l~~L~~L~l~-~~~~~ 169 (466)
T 1o6v_A 116 GLTLFNNQITDI-DP-LKNLTNLNRLELSSNTISD----------------------IS-ALSGLTSLQQLSFG-NQVTD 169 (466)
T ss_dssp EEECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECC----------------------CG-GGTTCTTCSEEEEE-ESCCC
T ss_pred EEECCCCCCCCC-hH-HcCCCCCCEEECCCCccCC----------------------Ch-hhccCCcccEeecC-CcccC
Confidence 999999998854 33 8889999999999887753 22 36778899999996 45543
Q ss_pred CCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCccc
Q 005711 264 GIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLK 343 (681)
Q Consensus 264 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~ 343 (681)
. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..| ++.+. +|+.|++++|.+++. ..
T Consensus 170 ~--~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~---~L~~L~l~~n~l~~~--~~ 238 (466)
T 1o6v_A 170 L--KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILT---NLDELSLNGNQLKDI--GT 238 (466)
T ss_dssp C--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCT---TCCEEECCSSCCCCC--GG
T ss_pred c--hhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccC---CCCEEECCCCCcccc--hh
Confidence 3 2388999999999999998753 358899999999999999987655 44444 899999999999853 35
Q ss_pred ccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCcc
Q 005711 344 ITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLK 423 (681)
Q Consensus 344 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 423 (681)
+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.+.+..+ +..+++|+
T Consensus 239 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 312 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLT 312 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCS
T ss_pred hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCC
Confidence 7889999999999999987655 8899999999999999997554 7889999999999999998655 78899999
Q ss_pred EEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCc
Q 005711 424 ILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNK 503 (681)
Q Consensus 424 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~ 503 (681)
.|++++|.+++..| +..+++|++|++++|++++. ..+..+++|++|++++|++++..| +..+++|+.|++++|+
T Consensus 313 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 313 YLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 386 (466)
T ss_dssp EEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEE
T ss_pred EEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCc
Confidence 99999999998766 78899999999999999975 468899999999999999998776 8899999999999999
Q ss_pred cccC
Q 005711 504 FMGF 507 (681)
Q Consensus 504 ~~~~ 507 (681)
+++.
T Consensus 387 ~~~~ 390 (466)
T 1o6v_A 387 WTNA 390 (466)
T ss_dssp EECC
T ss_pred ccCC
Confidence 9873
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.3e-35 Score=320.15 Aligned_cols=252 Identities=21% Similarity=0.171 Sum_probs=112.1
Q ss_pred ccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccC
Q 005711 227 LLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSF 306 (681)
Q Consensus 227 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 306 (681)
+++|++++|++++..+..+..+++|++|++++|.+++..|..+.++++|++|++++|.++...+..+..+++|++|++++
T Consensus 34 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 113 (477)
T 2id5_A 34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISE 113 (477)
T ss_dssp CSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTT
T ss_pred CcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCC
Confidence 34444444444444444555555555555555555554455555555555555555555433333344455555555555
Q ss_pred CCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCcc
Q 005711 307 NDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSG 386 (681)
Q Consensus 307 n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 386 (681)
|.+++..|..+..+. +|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|+.|++++|.+.+
T Consensus 114 n~i~~~~~~~~~~l~---~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 114 NKIVILLDYMFQDLY---NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp SCCCEECTTTTTTCT---TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred CccccCChhHccccc---cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 554444444443333 44445555554444444444444455555555554444433444444445555554444444
Q ss_pred ccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhc
Q 005711 387 SIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITK 466 (681)
Q Consensus 387 ~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 466 (681)
..+..+..+++|+.|++++|...+.++.......+|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..
T Consensus 191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (477)
T 2id5_A 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270 (477)
T ss_dssp ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc
Confidence 33333333444444444433333333333222333444444444443222233333444444444444443333333333
Q ss_pred CCCCCEEEccCCcCc
Q 005711 467 WTNLKYFSIARNKLS 481 (681)
Q Consensus 467 l~~L~~L~L~~n~l~ 481 (681)
+++|++|++++|++.
T Consensus 271 l~~L~~L~L~~n~l~ 285 (477)
T 2id5_A 271 LLRLQEIQLVGGQLA 285 (477)
T ss_dssp CTTCCEEECCSSCCS
T ss_pred cccCCEEECCCCccc
Confidence 344444444444333
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=8.4e-34 Score=301.44 Aligned_cols=332 Identities=20% Similarity=0.170 Sum_probs=241.1
Q ss_pred CCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCcc
Q 005711 248 AMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLV 327 (681)
Q Consensus 248 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~ 327 (681)
+.+++.|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+. +|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~---~L~ 120 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP---LLT 120 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT---TCC
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC---CCC
Confidence 45666777777666644444456667777777777777665556667777777777777777766565555555 677
Q ss_pred EEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeeccccc
Q 005711 328 LLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNN 407 (681)
Q Consensus 328 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~ 407 (681)
+|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|++++|.+++. .+..+++|+.+++++|.
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL 197 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccc
Confidence 777777777743334456777777777777777766666677777777777777777653 24556777777777777
Q ss_pred ccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcc
Q 005711 408 LSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNW 487 (681)
Q Consensus 408 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~ 487 (681)
+.+. ...++|+.|++++|.+... |.. ..++|++|++++|.+++. ..+..+++|++|++++|.+++..|..
T Consensus 198 l~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~ 267 (390)
T 3o6n_A 198 LSTL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP 267 (390)
T ss_dssp CSEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred cccc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhH
Confidence 6642 3345788999999988754 332 357899999999999864 57888999999999999999888888
Q ss_pred cccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCCcCCCCCCCEEECCCCc
Q 005711 488 LFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNS 567 (681)
Q Consensus 488 ~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~N~ 567 (681)
+..+++|+.|++++|+++ .+|..+..+++|++|+|++|++++..+.+..+++|+.|++++|+
T Consensus 268 ~~~l~~L~~L~L~~n~l~------------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 268 FVKMQRLERLYISNNRLV------------------ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp GTTCSSCCEEECCSSCCC------------------EEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC
T ss_pred ccccccCCEEECCCCcCc------------------ccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCc
Confidence 888999998888888775 34556677899999999999999544448889999999999999
Q ss_pred CcccCCccccCCCCCCeEecccCcceeeCCCCCCCCCccc-cccCCCCCCC
Q 005711 568 LTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPG-AFAGNPNLCL 617 (681)
Q Consensus 568 l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~-~~~gn~~lc~ 617 (681)
+++. | +..+++|+.|++++|++.|..... .+..+.. .+.+++..|.
T Consensus 330 i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~~-~~~~~~~~~~~~~~~~c~ 376 (390)
T 3o6n_A 330 IVTL-K--LSTHHTLKNLTLSHNDWDCNSLRA-LFRNVARPAVDDADQHCK 376 (390)
T ss_dssp CCCC-C--CCTTCCCSEEECCSSCEEHHHHHH-HTTTCCTTTBCCCCSCCC
T ss_pred ccee-C--chhhccCCEEEcCCCCccchhHHH-HHHHHHhhcccccCceec
Confidence 9854 3 677899999999999999864321 1222222 4555555554
No 37
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.4e-34 Score=297.30 Aligned_cols=257 Identities=29% Similarity=0.468 Sum_probs=182.1
Q ss_pred CccEEEccCCCCcC--CCcccccCCCCCCEEeccC-CccccccccccCCCCCCCEEEccCCcCccccCcccccCCCccee
Q 005711 325 GLVLLDLSHNRFSG--EIPLKITELKSLQALFLSN-NLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLAL 401 (681)
Q Consensus 325 ~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L 401 (681)
+++.|++++|.+++ .+|..+..+++|++|++++ |.+.+.+|..++++++|++|++++|.+++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--------------- 115 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG--------------- 115 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE---------------
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC---------------
Confidence 45555555555555 4555555555555555552 55555555555555555555555555444
Q ss_pred ecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCC-CCCEEEccCCcC
Q 005711 402 IVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWT-NLKYFSIARNKL 480 (681)
Q Consensus 402 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l 480 (681)
.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|.+
T Consensus 116 ---------~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 116 ---------AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp ---------ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred ---------cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence 4444555566666666666666666666666666777777777776666666666666 677777777777
Q ss_pred cccCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCCcCCCCCCCE
Q 005711 481 SGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRA 560 (681)
Q Consensus 481 ~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~ 560 (681)
++.+|..+..+. |+.|++++|++ ++.+|..+..+++|++|+|++|++++.+|.+..+++|++
T Consensus 187 ~~~~~~~~~~l~-L~~L~Ls~N~l-----------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~ 248 (313)
T 1ogq_A 187 TGKIPPTFANLN-LAFVDLSRNML-----------------EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNG 248 (313)
T ss_dssp EEECCGGGGGCC-CSEEECCSSEE-----------------EECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCE
T ss_pred eccCChHHhCCc-ccEEECcCCcc-----------------cCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCE
Confidence 766776666655 55555554444 346677788889999999999999988888888999999
Q ss_pred EECCCCcCcccCCccccCCCCCCeEecccCcceeeCCCCCCCCCccc-cccCCCCCCCCCCCCCC
Q 005711 561 LDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPG-AFAGNPNLCLESSHGEC 624 (681)
Q Consensus 561 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~-~~~gn~~lc~~~~~~~c 624 (681)
|++++|++++.+|..+..+++|++|++++|+++|.+|....+..+.. .+.||+.+||.|.. .|
T Consensus 249 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp EECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred EECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 99999999999999999999999999999999999998776767766 89999999998765 46
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.2e-33 Score=316.74 Aligned_cols=333 Identities=21% Similarity=0.180 Sum_probs=236.1
Q ss_pred CCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCcc
Q 005711 248 AMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLV 327 (681)
Q Consensus 248 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~ 327 (681)
+.+++.+++++|.+....+..+..+++|++|++++|.+++..+..+..+++|++|+|++|.+++..|..++.+. +|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~---~L~ 126 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP---LLT 126 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT---TCC
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCC---CCC
Confidence 34556666666665544444455666666666666666655555666666666666666666655555555554 666
Q ss_pred EEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeeccccc
Q 005711 328 LLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNN 407 (681)
Q Consensus 328 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~ 407 (681)
+|++++|.+++..+..|..+++|++|++++|.+++..|..+.++++|++|++++|.+++. .+..+++|+.+++++|.
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL 203 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCc
Confidence 666666666644444456667777777777777666666677777777777777776653 23455667777777776
Q ss_pred ccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcc
Q 005711 408 LSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNW 487 (681)
Q Consensus 408 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~ 487 (681)
+.+. ...++|+.|++++|.+....+. + .++|+.|++++|.+++. ..+..+++|++|++++|.+.+..|..
T Consensus 204 l~~l-----~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~ 273 (597)
T 3oja_B 204 LSTL-----AIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP 273 (597)
T ss_dssp CSEE-----ECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred cccc-----cCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHH
Confidence 6542 3345788888888888754332 2 36889999999998863 67888999999999999999888888
Q ss_pred cccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCC
Q 005711 488 LFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHN 566 (681)
Q Consensus 488 ~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N 566 (681)
+..+++|+.|++++|+++ .+|..+..+++|+.|+|++|.+++ +|. ++.+++|+.|++++|
T Consensus 274 ~~~l~~L~~L~Ls~N~l~------------------~l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N 334 (597)
T 3oja_B 274 FVKMQRLERLYISNNRLV------------------ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHN 334 (597)
T ss_dssp GTTCSSCCEEECTTSCCC------------------EEECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSS
T ss_pred hcCccCCCEEECCCCCCC------------------CCCcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCC
Confidence 888889988888888775 345666778899999999999994 555 888999999999999
Q ss_pred cCcccCCccccCCCCCCeEecccCcceeeCCCCCCCCCccc-cccCCCCCCCCC
Q 005711 567 SLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPG-AFAGNPNLCLES 619 (681)
Q Consensus 567 ~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~-~~~gn~~lc~~~ 619 (681)
.+++. | +..+++|+.|++++|++.|.++..+ +..+.. .+.+++..|+.+
T Consensus 335 ~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~~~-~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 335 SIVTL-K--LSTHHTLKNLTLSHNDWDCNSLRAL-FRNVARPAVDDADQHCKID 384 (597)
T ss_dssp CCCCC-C--CCTTCCCSEEECCSSCEEHHHHHHH-TTTCCTTTBCCCCCCCCTT
T ss_pred CCCCc-C--hhhcCCCCEEEeeCCCCCChhHHHH-HHHHhhhccccccccCCcc
Confidence 99865 3 6678899999999999998754322 333333 577888888753
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.7e-33 Score=297.57 Aligned_cols=350 Identities=18% Similarity=0.156 Sum_probs=230.1
Q ss_pred CCCC-CCCCCCC-CCceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEcc
Q 005711 61 LSSW-VGSNCTN-WTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLS 138 (681)
Q Consensus 61 ~~~w-~~~~cc~-w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 138 (681)
+++| .+.+||. |.+..|.... +.+............-..++++++|++++|.++...+..|..+++|++|+++
T Consensus 3 ~~~~~~~~~C~~~~~~~~c~~~~-----~~i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~ 77 (390)
T 3o6n_A 3 VKPRQPEYKCIDSNLQYDCVFYD-----VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 77 (390)
T ss_dssp ----CCEECBCC------EEEES-----CEECSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECT
T ss_pred cCCCCCccceehhhhhhccceee-----eeeecccccccccccccccCCceEEEecCCchhhCChhHhcccccCcEEECC
Confidence 5678 4567775 6555554222 1222222221222223456889999999998887666667889999999999
Q ss_pred CCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCcc
Q 005711 139 YNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTG 218 (681)
Q Consensus 139 ~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 218 (681)
+|.+++..+..|.++++|++|++++| .+.+..|..++++ ++|++|++++|.++...+..+.++++|++|++++|.+++
T Consensus 78 ~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~ 155 (390)
T 3o6n_A 78 DLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNV-PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 155 (390)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCC-CCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc
Confidence 99998777778999999999999988 4556666777777 788888888888884333446788888888888877765
Q ss_pred cccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCC
Q 005711 219 NVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEK 298 (681)
Q Consensus 219 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 298 (681)
.. +..+..+++|++|++++|++++. .+..+++|++|++++|.+++ +...++
T Consensus 156 ~~---------------------~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~ 206 (390)
T 3o6n_A 156 IE---------------------DDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIA 206 (390)
T ss_dssp CC---------------------TTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSS
T ss_pred cC---------------------hhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCc
Confidence 43 33445555566666666655532 23445566666666665542 223345
Q ss_pred CcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEE
Q 005711 299 LLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVID 378 (681)
Q Consensus 299 L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 378 (681)
|+.|++++|.+... |... .++|+.|++++|.+++. ..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 207 L~~L~l~~n~l~~~-~~~~-----~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 278 (390)
T 3o6n_A 207 VEELDASHNSINVV-RGPV-----NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278 (390)
T ss_dssp CSEEECCSSCCCEE-ECCC-----CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred ceEEECCCCeeeec-cccc-----cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEE
Confidence 66666666666532 2211 12677777777777643 3566677777777777777776677777777777777
Q ss_pred ccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCC
Q 005711 379 LSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSG 458 (681)
Q Consensus 379 Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 458 (681)
+++|.+++ +|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.++.. + +..+++|++|++++|++..
T Consensus 279 L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 279 ISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred CCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence 77777764 4555566777777777777776 3455566778888888888888743 3 6678888888888888875
Q ss_pred c
Q 005711 459 S 459 (681)
Q Consensus 459 ~ 459 (681)
.
T Consensus 354 ~ 354 (390)
T 3o6n_A 354 N 354 (390)
T ss_dssp H
T ss_pred h
Confidence 4
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=8.9e-33 Score=309.68 Aligned_cols=312 Identities=19% Similarity=0.166 Sum_probs=220.5
Q ss_pred CCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCcc
Q 005711 104 KLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLE 183 (681)
Q Consensus 104 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~ 183 (681)
.+++++.+++++|.+....+..|+++++|++|+|++|.+++..|..|+.+++|++|++++| .+.+..|..++++ ++|+
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l-~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNV-PLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTC-TTCC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCC-CCCC
Confidence 4678899999999888777777888999999999999998887788888999999999888 4566666677777 7888
Q ss_pred EEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCcccc
Q 005711 184 KLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVG 263 (681)
Q Consensus 184 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 263 (681)
+|++++|.+++..+..|+++++|++|++++|.+++.. |..+..+++|++|++++|.+++
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~---------------------~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE---------------------DDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC---------------------TTTTTTCTTCCEEECTTSCCSB
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCC---------------------hhhhhcCCcCcEEECcCCCCCC
Confidence 8888888888554555678888888888877766543 4445555566666666665554
Q ss_pred CCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCccc
Q 005711 264 GIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLK 343 (681)
Q Consensus 264 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~ 343 (681)
. .++.+++|+.|++++|.+++ +...++|+.|++++|.++.. |..+. ++|+.|++++|.+++. ..
T Consensus 186 ~---~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~-~~~~~-----~~L~~L~L~~n~l~~~--~~ 249 (597)
T 3oja_B 186 V---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-RGPVN-----VELTILKLQHNNLTDT--AW 249 (597)
T ss_dssp C---CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEE-ECSCC-----SCCCEEECCSSCCCCC--GG
T ss_pred c---ChhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccc-ccccC-----CCCCEEECCCCCCCCC--hh
Confidence 3 13445566666666665543 22334566666666666532 21111 2677777777777652 45
Q ss_pred ccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCcc
Q 005711 344 ITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLK 423 (681)
Q Consensus 344 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 423 (681)
+..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. .+|..+..+++|+
T Consensus 250 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~ 327 (597)
T 3oja_B 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE 327 (597)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCS
T ss_pred hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCC
Confidence 6677777777777777777777777777777777777777765 4555566777777777777777 4566667778888
Q ss_pred EEEcccCcceeccccccCCCCCCcEEECCCCcCCCc
Q 005711 424 ILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGS 459 (681)
Q Consensus 424 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 459 (681)
.|++++|.+.+. + +..+++|+.|++++|++.+.
T Consensus 328 ~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 328 NLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp EEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred EEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCCh
Confidence 888888888754 2 56778888888888888754
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.2e-31 Score=280.12 Aligned_cols=305 Identities=24% Similarity=0.321 Sum_probs=211.6
Q ss_pred ccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCC
Q 005711 246 ASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAG 325 (681)
Q Consensus 246 ~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~ 325 (681)
..+++|++|+++++.+.. ++ .+..+++|++|++++|.+++.. . +..+++|++|++++|.+++ +| .+..+. +
T Consensus 41 ~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~-~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~---~ 111 (347)
T 4fmz_A 41 EELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDIS-P-LSNLVKLTNLYIGTNKITD-IS-ALQNLT---N 111 (347)
T ss_dssp HHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCC-CG-GGTTCT---T
T ss_pred hhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccch-h-hhcCCcCCEEEccCCcccC-ch-HHcCCC---c
Confidence 345566666666666653 23 2566666777777666665332 2 6666777777777776653 22 233333 6
Q ss_pred ccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeeccc
Q 005711 326 LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNN 405 (681)
Q Consensus 326 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~ 405 (681)
|++|++++|.+++. +. +..+++|++|++++|.....++. +..+++|++|++++|.+.+..+ +..+++|+.|++++
T Consensus 112 L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~ 186 (347)
T 4fmz_A 112 LRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNY 186 (347)
T ss_dssp CSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTT
T ss_pred CCEEECcCCcccCc-hh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccC
Confidence 77777777777643 32 66677777777777755544433 6777777777777777664433 56677777777777
Q ss_pred ccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCC
Q 005711 406 NNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLP 485 (681)
Q Consensus 406 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 485 (681)
|.+.+..+ +..+++|+.+++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+++ +
T Consensus 187 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~- 258 (347)
T 4fmz_A 187 NQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I- 258 (347)
T ss_dssp SCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-
T ss_pred Cccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-
Confidence 77665433 6677788888888888775544 6777888888888888875443 7778888888888888764 2
Q ss_pred cccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEECC
Q 005711 486 NWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLS 564 (681)
Q Consensus 486 ~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls 564 (681)
+.+..+++|+.|++++|++.+ + +.+..+++|++|++++|++++..|. +..+++|+.|+++
T Consensus 259 ~~~~~l~~L~~L~l~~n~l~~------------------~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 319 (347)
T 4fmz_A 259 NAVKDLTKLKMLNVGSNQISD------------------I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319 (347)
T ss_dssp GGGTTCTTCCEEECCSSCCCC------------------C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECC
T ss_pred hhHhcCCCcCEEEccCCccCC------------------C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEcc
Confidence 356677777777777776542 2 3467788999999999999887777 8889999999999
Q ss_pred CCcCcccCCccccCCCCCCeEecccCcce
Q 005711 565 HNSLTGQIPGNISSLQELTLLNLSYNSFS 593 (681)
Q Consensus 565 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 593 (681)
+|.+++..| +..+++|++|++++|+++
T Consensus 320 ~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 320 QNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCccccccC--hhhhhccceeehhhhccc
Confidence 999997766 788999999999999875
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.3e-31 Score=276.88 Aligned_cols=305 Identities=22% Similarity=0.291 Sum_probs=157.2
Q ss_pred CCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCcc
Q 005711 104 KLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLE 183 (681)
Q Consensus 104 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~ 183 (681)
.+++|++|+++++.+.. ++ .+..+++|++|++++|++++. |. +.++++|++|++++|.+. . +| .+..+ ++|+
T Consensus 42 ~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~-~-~~-~~~~l-~~L~ 113 (347)
T 4fmz_A 42 ELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKIT-D-IS-ALQNL-TNLR 113 (347)
T ss_dssp HHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-C-CG-GGTTC-TTCS
T ss_pred hcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCccc-C-ch-HHcCC-CcCC
Confidence 44556666666665553 22 255566666666666666532 22 555666666666555321 1 22 34444 4555
Q ss_pred EEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCcccc
Q 005711 184 KLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVG 263 (681)
Q Consensus 184 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 263 (681)
+|++++|.+.+ ++. +..+++|++|++++|.... . +..+..+++|++|++++|.+.+
T Consensus 114 ~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~---------------------~-~~~~~~l~~L~~L~l~~~~~~~ 169 (347)
T 4fmz_A 114 ELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLS---------------------D-LSPLSNMTGLNYLTVTESKVKD 169 (347)
T ss_dssp EEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCC---------------------C-CGGGTTCTTCCEEECCSSCCCC
T ss_pred EEECcCCcccC-chh-hccCCceeEEECCCCCCcc---------------------c-ccchhhCCCCcEEEecCCCcCC
Confidence 55555555542 222 5555555555555543221 1 1124445555555555555443
Q ss_pred CCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCccc
Q 005711 264 GIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLK 343 (681)
Q Consensus 264 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~ 343 (681)
..+ +..+++|++|++++|.+.+..+ +..+++|+.+++++|.+++..+ +..+. +|+.|++++|.+++..+
T Consensus 170 ~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~---~L~~L~l~~n~l~~~~~-- 238 (347)
T 4fmz_A 170 VTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMT---RLNSLKIGNNKITDLSP-- 238 (347)
T ss_dssp CGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCT---TCCEEECCSSCCCCCGG--
T ss_pred chh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCC---cCCEEEccCCccCCCcc--
Confidence 222 4455555555555555442221 4445555555555555443222 22222 45555555555553222
Q ss_pred ccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCcc
Q 005711 344 ITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLK 423 (681)
Q Consensus 344 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 423 (681)
+..+++|++|++++|.+++. +.+..+++|++|++++|.+++ . ..+..+++|+
T Consensus 239 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~------------------------~--~~~~~l~~L~ 290 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD------------------------I--SVLNNLSQLN 290 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC------------------------C--GGGGGCTTCS
T ss_pred hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC------------------------C--hhhcCCCCCC
Confidence 44555555555555555432 234555555555555555443 2 1244566666
Q ss_pred EEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCc
Q 005711 424 ILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLS 481 (681)
Q Consensus 424 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 481 (681)
.|++++|.+++..+..+..+++|++|++++|++++..| +..+++|++|++++|.++
T Consensus 291 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 77777776666666666667777777777777665544 566677777777777654
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=7.5e-33 Score=286.02 Aligned_cols=276 Identities=22% Similarity=0.234 Sum_probs=177.4
Q ss_pred CCHHhHHHHHHHHhcCC-CCCCCCCCCC-----CCCCCCCCceeecC--------CCCcEEEEEcCCCCCcccccccccC
Q 005711 39 LNLEDKASLLLFKSLVQ-DPTQKLSSWV-----GSNCTNWTGVACNF--------QTGHVVSINLTDTSLSGQVHPRLCK 104 (681)
Q Consensus 39 ~~~~~~~~l~~~~~~~~-~~~~~~~~w~-----~~~cc~w~gv~c~~--------~~~~v~~L~L~~~~l~g~~~~~l~~ 104 (681)
...+++.||++||+.+. ++.+...+|. ..++|.|.|+.|+. ...+|+.|+|+++.+. .+|+.+++
T Consensus 24 ~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~ 102 (328)
T 4fcg_A 24 ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFR 102 (328)
T ss_dssp CCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGG
T ss_pred cCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhh
Confidence 34466779999999884 5555567882 46789999999952 3467888888888877 66777777
Q ss_pred CCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccE
Q 005711 105 LSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEK 184 (681)
Q Consensus 105 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~ 184 (681)
+++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|..|+++++|++|++++| ...+.+|..++..
T Consensus 103 l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n-~~~~~~p~~~~~~------ 173 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRAC-PELTELPEPLAST------ 173 (328)
T ss_dssp GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEE-TTCCCCCSCSEEE------
T ss_pred CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCC-CCccccChhHhhc------
Confidence 888888888888877 67777788888888888888877 66777777878888887776 3445566554431
Q ss_pred EEccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCccccC
Q 005711 185 LDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGG 264 (681)
Q Consensus 185 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 264 (681)
..+..+.++++|++|++++|.++ .+|..+..+++|++|++++|.+++
T Consensus 174 ----------~~~~~~~~l~~L~~L~L~~n~l~----------------------~lp~~l~~l~~L~~L~L~~N~l~~- 220 (328)
T 4fcg_A 174 ----------DASGEHQGLVNLQSLRLEWTGIR----------------------SLPASIANLQNLKSLKIRNSPLSA- 220 (328)
T ss_dssp ----------C-CCCEEESTTCCEEEEEEECCC----------------------CCCGGGGGCTTCCEEEEESSCCCC-
T ss_pred ----------cchhhhccCCCCCEEECcCCCcC----------------------cchHhhcCCCCCCEEEccCCCCCc-
Confidence 11112333555555555554443 334444555555555555555553
Q ss_pred CChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccc
Q 005711 265 IPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI 344 (681)
Q Consensus 265 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l 344 (681)
+|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+. +|+.|++++|.+.+.+|..+
T Consensus 221 l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~---~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT---QLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCT---TCCEEECTTCTTCCCCCGGG
T ss_pred CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCC---CCCEEeCCCCCchhhccHHH
Confidence 444455555566666665555555555555666666666666666666665555544 56666666666666666666
Q ss_pred cCCCCCCEEeccCCcc
Q 005711 345 TELKSLQALFLSNNLL 360 (681)
Q Consensus 345 ~~l~~L~~L~L~~n~l 360 (681)
+.+++|+.+++..+.+
T Consensus 298 ~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 298 AQLPANCIILVPPHLQ 313 (328)
T ss_dssp GGSCTTCEEECCGGGS
T ss_pred hhccCceEEeCCHHHH
Confidence 6666666666665543
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=4e-34 Score=311.18 Aligned_cols=280 Identities=19% Similarity=0.176 Sum_probs=144.4
Q ss_pred CccEEEccCCcCcc----ccCccccCCCCCCEEEccCccCcccccCc--------CCcccEEECCCCCCccc----cchh
Q 005711 181 NLEKLDFSFNSFCG----EIPESLYYLKSLKHLDLEKNNLTGNVHDF--------YQSLLVLNLGSNRFSGT----LPCF 244 (681)
Q Consensus 181 ~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~~~~--------~~~L~~L~L~~n~l~~~----~~~~ 244 (681)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+.. ..+|++|++++|++++. ++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 56677777766663 45666777777777777777765432221 12355555555555442 2444
Q ss_pred hccCCCCCEEEccCCccccCCChhhc-----ccCcccEEecCCCccccc----cCccccCCCCCcEEeccCCCccCCCCh
Q 005711 245 AASAMSLTVLKLDNNSVVGGIPTCIA-----SLQALTHLNLSHNHLNYE----ISPRLVFFEKLLLLDLSFNDLSGPLPS 315 (681)
Q Consensus 245 ~~~~~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~p~ 315 (681)
+..+++|++|++++|.++...+..+. ..++|++|++++|.++.. ++..+..+++|++|++++|.+++....
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 55556666666666665543333332 134555666665555532 233444455555555555554422111
Q ss_pred hhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccc----cccccCCCCCCCEEEccCCcCccccCcc
Q 005711 316 KIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGE----IPARIGNLTYLQVIDLSHNMLSGSIPLN 391 (681)
Q Consensus 316 ~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~p~~ 391 (681)
.+. +..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..
T Consensus 246 ~l~----------------------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 303 (461)
T 1z7x_W 246 ELC----------------------PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 303 (461)
T ss_dssp HHH----------------------HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred HHH----------------------HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHH
Confidence 111 11112344445555555444432 2333444445555555555444332222
Q ss_pred ccc-----CCCcceeeccccccccc----CccccCCCCCccEEEcccCcceeccccccCC-----CCCCcEEECCCCcCC
Q 005711 392 IVG-----CFQLLALIVNNNNLSGE----IQPELDALDSLKILDISNNQISGEIPLTLAG-----LKSLEIVDFSSNNLS 457 (681)
Q Consensus 392 ~~~-----~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-----l~~L~~L~L~~n~l~ 457 (681)
+.. .++|+.|++++|.+++. ++..+..+++|+.|++++|.+++..+..+.. .++|++|++++|.++
T Consensus 304 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 304 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred HHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 221 13445555555544433 2334445566667777766666543333321 556777777777776
Q ss_pred C----cchhhhhcCCCCCEEEccCCcCcc
Q 005711 458 G----SLNDAITKWTNLKYFSIARNKLSG 482 (681)
Q Consensus 458 ~----~~~~~~~~l~~L~~L~L~~n~l~~ 482 (681)
+ .++..+..+++|++|++++|++++
T Consensus 384 ~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 384 DSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred hhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 4 556666667777777777777654
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=3.7e-34 Score=311.44 Aligned_cols=252 Identities=19% Similarity=0.113 Sum_probs=118.8
Q ss_pred CccEEEccCCCCcCC----CcccccCCCCCCEEeccCCccccccccccC-----CCCCCCEEEccCCcCccc----cCcc
Q 005711 325 GLVLLDLSHNRFSGE----IPLKITELKSLQALFLSNNLLIGEIPARIG-----NLTYLQVIDLSHNMLSGS----IPLN 391 (681)
Q Consensus 325 ~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~Ls~n~l~~~----~p~~ 391 (681)
+|++|++++|++++. ++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++. ++..
T Consensus 143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 222 (461)
T 1z7x_W 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 222 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence 344444444444432 123333344555555555544433222221 133455555555544432 2333
Q ss_pred cccCCCcceeecccccccccC-----ccccCCCCCccEEEcccCcceec----cccccCCCCCCcEEECCCCcCCCcchh
Q 005711 392 IVGCFQLLALIVNNNNLSGEI-----QPELDALDSLKILDISNNQISGE----IPLTLAGLKSLEIVDFSSNNLSGSLND 462 (681)
Q Consensus 392 ~~~~~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~~~ 462 (681)
+..+++|++|++++|.+.+.. +..+..+++|+.|++++|.+++. ++..+..+++|++|++++|.+++..+.
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence 334444444444444443321 11122355666666666665543 344455566666666666665543333
Q ss_pred hhhc-----CCCCCEEEccCCcCccc----CCcccccCCccceeecccCccccCCCCCcccccCCccccccCCccccc--
Q 005711 463 AITK-----WTNLKYFSIARNKLSGN----LPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQ-- 531 (681)
Q Consensus 463 ~~~~-----l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~-- 531 (681)
.+.. .++|++|++++|.+++. ++..+..+++|+.|++++|++.+ ..+..+..
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~-----------------~~~~~l~~~l 365 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED-----------------AGVRELCQGL 365 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH-----------------HHHHHHHHHH
T ss_pred HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc-----------------ccHHHHHHHH
Confidence 3222 24666666666665543 33444455555555555554432 11111111
Q ss_pred ---ccccceeecCCCcCcc----cCCC-cCCCCCCCEEECCCCcCcccCCccc-----cCCCCCCeEecccCcce
Q 005711 532 ---LQGLEYLNLSFNFLDG----QVPG-LYRLRSLRALDLSHNSLTGQIPGNI-----SSLQELTLLNLSYNSFS 593 (681)
Q Consensus 532 ---l~~L~~L~Ls~N~l~~----~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l-----~~l~~L~~L~ls~N~l~ 593 (681)
.++|++|+|++|++++ .+|. +..+++|+.|++++|++++.-...+ .....|+.|++.++.+.
T Consensus 366 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 366 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred cCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 4466666666666664 4444 5556666666666666654311111 11234555655555543
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=5.9e-30 Score=265.30 Aligned_cols=290 Identities=20% Similarity=0.252 Sum_probs=160.9
Q ss_pred CCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEE
Q 005711 250 SLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLL 329 (681)
Q Consensus 250 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L 329 (681)
+++.++++++.++ .+|..+. +++++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+. +|++|
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~---~L~~L 105 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV---KLERL 105 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT---TCCEE
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCC---CCCEE
Confidence 4666666666655 3444332 4566666666666655554566666666666666666555555555444 56666
Q ss_pred EccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeeccccccc
Q 005711 330 DLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLS 409 (681)
Q Consensus 330 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~ 409 (681)
++++|.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+.. .
T Consensus 106 ~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~ 160 (330)
T 1xku_A 106 YLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS----------------------S 160 (330)
T ss_dssp ECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG----------------------G
T ss_pred ECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc----------------------c
Confidence 66666655 3443332 455566666655555555555555555555555555532 0
Q ss_pred ccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccc
Q 005711 410 GEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLF 489 (681)
Q Consensus 410 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 489 (681)
+..+..+..+++|+.|++++|.++. +|..+. ++|++|++++|++++..+..+..+++|++|++++|.+++..+..+.
T Consensus 161 ~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 237 (330)
T 1xku_A 161 GIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237 (330)
T ss_dssp GBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred CcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc
Confidence 1233334444555555555555542 333222 4555555555555555555555555566666666655554444555
Q ss_pred cCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCC------CCCCCEEE
Q 005711 490 SFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYR------LRSLRALD 562 (681)
Q Consensus 490 ~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~------l~~L~~L~ 562 (681)
.+++|+.|++++|++. .+|..+..+++|++|++++|++++..+. +.. ...|+.|+
T Consensus 238 ~l~~L~~L~L~~N~l~------------------~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~ 299 (330)
T 1xku_A 238 NTPHLRELHLNNNKLV------------------KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS 299 (330)
T ss_dssp GSTTCCEEECCSSCCS------------------SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEE
T ss_pred CCCCCCEEECCCCcCc------------------cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceE
Confidence 5555555555555443 4555666667777777777777654443 322 36677777
Q ss_pred CCCCcCcc--cCCccccCCCCCCeEecccCc
Q 005711 563 LSHNSLTG--QIPGNISSLQELTLLNLSYNS 591 (681)
Q Consensus 563 Ls~N~l~~--~~p~~l~~l~~L~~L~ls~N~ 591 (681)
+++|.+.. ..|..|..+..++.+++++|+
T Consensus 300 l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 300 LFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred eecCcccccccCccccccccceeEEEecccC
Confidence 77777753 455667777777888877774
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.3e-29 Score=262.76 Aligned_cols=295 Identities=20% Similarity=0.210 Sum_probs=161.5
Q ss_pred CCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEE
Q 005711 107 FLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLD 186 (681)
Q Consensus 107 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~ 186 (681)
+++.++++++.++. +|..+. +.|++|++++|++++..+..|.++++|++|++++|
T Consensus 32 ~l~~l~~~~~~l~~-lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n---------------------- 86 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN---------------------- 86 (330)
T ss_dssp ETTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS----------------------
T ss_pred CCeEEEecCCCccc-cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC----------------------
Confidence 56777887777763 454443 57777777777777665556666666666666665
Q ss_pred ccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCcccc--C
Q 005711 187 FSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVG--G 264 (681)
Q Consensus 187 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~--~ 264 (681)
.+++..|..+.++++|++|++++|.++......+.+|++|++++|.+++..+..+..+++|++|++++|.+.. .
T Consensus 87 ----~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 162 (330)
T 1xku_A 87 ----KISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 162 (330)
T ss_dssp ----CCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGB
T ss_pred ----cCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCc
Confidence 3333334445555555555555555543333333445555555555555555566677777777777776642 4
Q ss_pred CChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccc
Q 005711 265 IPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI 344 (681)
Q Consensus 265 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l 344 (681)
.+..+..+++|++|++++|.++. +|..+. ++|++|++++|.+++..|..+..+. +|+.|++++|.+++..+..+
T Consensus 163 ~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~---~L~~L~Ls~n~l~~~~~~~~ 236 (330)
T 1xku_A 163 ENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLN---NLAKLGLSFNSISAVDNGSL 236 (330)
T ss_dssp CTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCT---TCCEEECCSSCCCEECTTTG
T ss_pred ChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCC---CCCEEECCCCcCceeChhhc
Confidence 55556666666666666666552 333221 4455555555555444444444333 45555555555544444444
Q ss_pred cCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccE
Q 005711 345 TELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKI 424 (681)
Q Consensus 345 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 424 (681)
..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..+.... .......++.
T Consensus 237 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~------------------~~~~~~~l~~ 297 (330)
T 1xku_A 237 ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG------------------YNTKKASYSG 297 (330)
T ss_dssp GGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSS------------------CCTTSCCCSE
T ss_pred cCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcc------------------cccccccccc
Confidence 44455555555555444 3444444445555555555554433222221100 0012367788
Q ss_pred EEcccCccee--ccccccCCCCCCcEEECCCCc
Q 005711 425 LDISNNQISG--EIPLTLAGLKSLEIVDFSSNN 455 (681)
Q Consensus 425 L~Ls~n~l~~--~~p~~~~~l~~L~~L~L~~n~ 455 (681)
+++++|.+.. ..|..|..+.+++.+++++|+
T Consensus 298 l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 298 VSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp EECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred eEeecCcccccccCccccccccceeEEEecccC
Confidence 8888887753 456777888888888888874
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=6.5e-30 Score=265.15 Aligned_cols=288 Identities=19% Similarity=0.203 Sum_probs=156.9
Q ss_pred CCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEE
Q 005711 107 FLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLD 186 (681)
Q Consensus 107 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~ 186 (681)
+++.++++++.++ .+|..+. ++|++|++++|.+++..|..|.++++ |++|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~--------------------------L~~L~ 84 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQH--------------------------LYALV 84 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTT--------------------------CCEEE
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCC--------------------------CcEEE
Confidence 4555666555554 3343332 45555555555555444444555544 45555
Q ss_pred ccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCcccc--C
Q 005711 187 FSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVG--G 264 (681)
Q Consensus 187 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~--~ 264 (681)
+++|.+++..|..++++++|++|++++|.++...+..+.+|++|++++|++++..+..+..+++|++|++++|.++. .
T Consensus 85 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 164 (332)
T 2ft3_A 85 LVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF 164 (332)
T ss_dssp CCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGS
T ss_pred CCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCC
Confidence 55555555555666666666666666666654333333344555555555544444445555666666666665532 3
Q ss_pred CChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccc
Q 005711 265 IPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI 344 (681)
Q Consensus 265 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l 344 (681)
.+..+..+ +|++|++++|.+++ +|..+. + +|+.|++++|.+++..+..+
T Consensus 165 ~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~---------------------------~L~~L~l~~n~i~~~~~~~l 213 (332)
T 2ft3_A 165 EPGAFDGL-KLNYLRISEAKLTG-IPKDLP--E---------------------------TLNELHLDHNKIQAIELEDL 213 (332)
T ss_dssp CTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--S---------------------------SCSCCBCCSSCCCCCCTTSS
T ss_pred CcccccCC-ccCEEECcCCCCCc-cCcccc--C---------------------------CCCEEECCCCcCCccCHHHh
Confidence 34444444 45555555554442 222221 3 45555555555554444455
Q ss_pred cCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCC------
Q 005711 345 TELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDA------ 418 (681)
Q Consensus 345 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~------ 418 (681)
..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+++..+..+..
T Consensus 214 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 292 (332)
T 2ft3_A 214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVK 292 (332)
T ss_dssp TTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSS
T ss_pred cCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccc
Confidence 55555555555555555544445555555555555555555 45555555555555555555555444443332
Q ss_pred CCCccEEEcccCcce--eccccccCCCCCCcEEECCCCc
Q 005711 419 LDSLKILDISNNQIS--GEIPLTLAGLKSLEIVDFSSNN 455 (681)
Q Consensus 419 l~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~L~~n~ 455 (681)
..+|+.|++++|.+. +..|..|..+++|+.+++++|+
T Consensus 293 ~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 293 RAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 467888999998877 5667788888999999988875
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=4.9e-30 Score=266.06 Aligned_cols=288 Identities=22% Similarity=0.248 Sum_probs=198.7
Q ss_pred CCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCc
Q 005711 205 SLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNH 284 (681)
Q Consensus 205 ~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 284 (681)
+++.++++++.++.......+++++|++++|.+++..+..+..+++|++|++++|++++..|..++.+++|++|++++|.
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 113 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC
T ss_pred cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc
Confidence 45555555555554333333455666666666665556667777777777777777776667777777777777777777
Q ss_pred cccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCc--CCCcccccCCCCCCEEeccCCcccc
Q 005711 285 LNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFS--GEIPLKITELKSLQALFLSNNLLIG 362 (681)
Q Consensus 285 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~L~~n~l~~ 362 (681)
++ .+|..+. ++|++|++++|.+++..+..+..+. +|+.|++++|.++ +..|..+..+ +|++|++++|.+++
T Consensus 114 l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~---~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 114 LV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLR---NMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp CC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCS---SCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCc---cCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 76 4444443 6777777777777755444455554 7777777777775 3556666666 77888888887764
Q ss_pred ccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCC
Q 005711 363 EIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAG 442 (681)
Q Consensus 363 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 442 (681)
+|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+++ .+|..+..
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 444443 67778888888877776677777788888888888887777767777888888888888887 67777778
Q ss_pred CCCCcEEECCCCcCCCcchhhhhc------CCCCCEEEccCCcCc--ccCCcccccCCccceeecccCc
Q 005711 443 LKSLEIVDFSSNNLSGSLNDAITK------WTNLKYFSIARNKLS--GNLPNWLFSFQAIQMMDFSTNK 503 (681)
Q Consensus 443 l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~ls~n~ 503 (681)
+++|++|++++|++++..+..+.. .++|+.|++++|.+. +..|..+..+++|+.+++++|+
T Consensus 263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 888888888888887665555543 356788888888876 4556667778888888887764
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=5.6e-33 Score=312.12 Aligned_cols=409 Identities=17% Similarity=0.156 Sum_probs=198.5
Q ss_pred CCCCCCceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcC---Ccccccccc------------CCCCC
Q 005711 68 NCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAF---TGRISTCFG------------GLSGL 132 (681)
Q Consensus 68 ~cc~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l---~~~~~~~~~------------~l~~L 132 (681)
-|.+|.++.+. ..+ .+.+... .....+..+..+++|++|+++++.. .+.+|..++ .+++|
T Consensus 40 vck~W~~~~~~--~~~--~l~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L 114 (592)
T 3ogk_B 40 VCRRWFKIDSE--TRE--HVTMALC-YTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQL 114 (592)
T ss_dssp SCHHHHHHHHH--HCC--EEEESCG-GGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTC
T ss_pred HhHHHHHhhhc--ccc--EEEEeec-cccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCC
Confidence 46678887543 111 2223221 1222233456778888888876532 122332222 56667
Q ss_pred CEEEccCCCCCCcCCccccCC-C-CCCEeeCCCCCCCC-ccCCchhccccCCccEEEccCCcCccc----cCccccCCCC
Q 005711 133 KTLDLSYNKFVGVVPDAIMKL-R-NLRELILKGNPELG-GVFPGWVGNFSMNLEKLDFSFNSFCGE----IPESLYYLKS 205 (681)
Q Consensus 133 ~~L~Ls~n~l~~~~p~~~~~l-~-~L~~L~L~~n~~~~-~~~p~~l~~l~~~L~~L~L~~n~l~~~----~p~~l~~l~~ 205 (681)
++|+|++|.+++..+..+... + +|++|++++|.... ..++.....+ ++|++|++++|.+++. ++.....+++
T Consensus 115 ~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~-~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~ 193 (592)
T 3ogk_B 115 KSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHC-RKIKTLLMEESSFSEKDGKWLHELAQHNTS 193 (592)
T ss_dssp CEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHC-TTCSEEECTTCEEECCCSHHHHHHHHHCCC
T ss_pred CeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhC-CCCCEEECccccccCcchhHHHHHHhcCCC
Confidence 777777766665544444442 2 36666666553110 0111112233 4555555555544332 2222334444
Q ss_pred CCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCcc
Q 005711 206 LKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHL 285 (681)
Q Consensus 206 L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 285 (681)
|++|++++|.+++... +.++..+.++++|++|++++|.+.+ +|..+..+++|++|+++.+..
T Consensus 194 L~~L~L~~n~~~~~~~-----------------~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~ 255 (592)
T 3ogk_B 194 LEVLNFYMTEFAKISP-----------------KDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNE 255 (592)
T ss_dssp CCEEECTTCCCSSCCH-----------------HHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCC
T ss_pred ccEEEeeccCCCccCH-----------------HHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhccccccc
Confidence 4444444444331100 2344555667777777777777664 556677777777777765322
Q ss_pred c---cccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCc-ccccCCCCCCEEeccCCccc
Q 005711 286 N---YEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIP-LKITELKSLQALFLSNNLLI 361 (681)
Q Consensus 286 ~---~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~ 361 (681)
. +..+..+..+++|+.++++++.. +.+|..+..++ +|++|++++|.+++... ..+..+++|++|+++++...
T Consensus 256 ~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~---~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~ 331 (592)
T 3ogk_B 256 DIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAA---QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGD 331 (592)
T ss_dssp CTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGG---GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHH
T ss_pred ccchHHHHHHhhccccccccCccccch-hHHHHHHhhcC---CCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCH
Confidence 2 22334455666677776665422 24444444444 56667776666554322 23456666777766633222
Q ss_pred cccccccCCCCCCCEEEccC-----------CcCccccC-cccccCCCcceeecccccccccCccccCC-CCCccEEEcc
Q 005711 362 GEIPARIGNLTYLQVIDLSH-----------NMLSGSIP-LNIVGCFQLLALIVNNNNLSGEIQPELDA-LDSLKILDIS 428 (681)
Q Consensus 362 ~~~~~~l~~l~~L~~L~Ls~-----------n~l~~~~p-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls 428 (681)
+.++.....+++|++|++++ |.+++... .....+++|+.|++..|.+++..+..+.. +++|+.|+++
T Consensus 332 ~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 332 RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred HHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence 22333334556666666662 34433211 11233555555555555555443333332 4555555554
Q ss_pred ----cCcceec-----cccccCCCCCCcEEECCCCc--CCCcchhhhh-cCCCCCEEEccCCcCcc-cCCcccccCCccc
Q 005711 429 ----NNQISGE-----IPLTLAGLKSLEIVDFSSNN--LSGSLNDAIT-KWTNLKYFSIARNKLSG-NLPNWLFSFQAIQ 495 (681)
Q Consensus 429 ----~n~l~~~-----~p~~~~~l~~L~~L~L~~n~--l~~~~~~~~~-~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~ 495 (681)
.|.+++. ++..+.++++|++|+++.|. +++.....+. .+++|++|++++|.+++ .++..+..+++|+
T Consensus 412 ~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~ 491 (592)
T 3ogk_B 412 LLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQ 491 (592)
T ss_dssp ECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCC
T ss_pred ecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccC
Confidence 3344431 22223445555555554322 3333333332 24555555555555543 2233334444555
Q ss_pred eeecccCcc
Q 005711 496 MMDFSTNKF 504 (681)
Q Consensus 496 ~L~ls~n~~ 504 (681)
.|++++|.+
T Consensus 492 ~L~l~~n~l 500 (592)
T 3ogk_B 492 KLEMRGCCF 500 (592)
T ss_dssp EEEEESCCC
T ss_pred eeeccCCCC
Confidence 554444443
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=2.6e-29 Score=263.02 Aligned_cols=285 Identities=21% Similarity=0.211 Sum_probs=204.4
Q ss_pred CCCCCCCCceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCc
Q 005711 66 GSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGV 145 (681)
Q Consensus 66 ~~~cc~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 145 (681)
...+|.|.++ |+ .+++.++ .+|..+. ++|++|++++|.+++..+..|+++++|++|++++|++++.
T Consensus 26 ~~~~C~~~~~-c~----------~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (353)
T 2z80_A 26 ASLSCDRNGI-CK----------GSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI 91 (353)
T ss_dssp -CCEECTTSE-EE----------CCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred cCCCCCCCeE-ee----------CCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc
Confidence 3456788887 65 3445554 4555554 4899999999999987777899999999999999999988
Q ss_pred CCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCcCccccCc--cccCCCCCCEEEccCcc-CcccccC
Q 005711 146 VPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPE--SLYYLKSLKHLDLEKNN-LTGNVHD 222 (681)
Q Consensus 146 ~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~-l~~~~~~ 222 (681)
.|..|.++++|++|++++|+ +.+..+..+.++ ++|++|++++|.+++ +|. .+.++++|++|++++|. +.+
T Consensus 92 ~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l-~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~---- 164 (353)
T 2z80_A 92 EEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPL-SSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTK---- 164 (353)
T ss_dssp CTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTC-TTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCE----
T ss_pred CHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCC-ccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccccc----
Confidence 88899999999999999994 444434447777 899999999999884 444 68888999999988874 433
Q ss_pred cCCcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEE
Q 005711 223 FYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLL 302 (681)
Q Consensus 223 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 302 (681)
..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.++...+..+..+++|+.|
T Consensus 165 -----------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 227 (353)
T 2z80_A 165 -----------------IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL 227 (353)
T ss_dssp -----------------ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEE
T ss_pred -----------------cCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEE
Confidence 234455566667777777777776666777777777777777777653333334456777777
Q ss_pred eccCCCccCCCChhhhhcccCCCccEEEccCCCCcC----CCcccccCCCCCCEEeccCCccccccccc-cCCCCCCCEE
Q 005711 303 DLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSG----EIPLKITELKSLQALFLSNNLLIGEIPAR-IGNLTYLQVI 377 (681)
Q Consensus 303 ~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L 377 (681)
++++|.+++..+..+........++.++++++.+++ .+|..+..+++|++|++++|+++. +|.. +.++++|++|
T Consensus 228 ~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L 306 (353)
T 2z80_A 228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKI 306 (353)
T ss_dssp EEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEE
T ss_pred ECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEE
Confidence 777777776555544443344467777777777765 356677788888888888888874 4444 5788888888
Q ss_pred EccCCcCccccC
Q 005711 378 DLSHNMLSGSIP 389 (681)
Q Consensus 378 ~Ls~n~l~~~~p 389 (681)
++++|.+.+..|
T Consensus 307 ~L~~N~~~~~~~ 318 (353)
T 2z80_A 307 WLHTNPWDCSCP 318 (353)
T ss_dssp ECCSSCBCCCHH
T ss_pred EeeCCCccCcCC
Confidence 888888776443
No 52
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=2.3e-31 Score=299.00 Aligned_cols=347 Identities=14% Similarity=0.067 Sum_probs=190.4
Q ss_pred cccEEECCCCCCccc----cchhhccCCCCCEEEccCCcccc----CCChhhcccCcccEEecCCCccccccCccccCCC
Q 005711 226 SLLVLNLGSNRFSGT----LPCFAASAMSLTVLKLDNNSVVG----GIPTCIASLQALTHLNLSHNHLNYEISPRLVFFE 297 (681)
Q Consensus 226 ~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 297 (681)
+|++|++++|.+++. ++.....+++|++|++++|.+++ .++..+..+++|++|++++|.+.+ ++..+..++
T Consensus 165 ~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~ 243 (592)
T 3ogk_B 165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAA 243 (592)
T ss_dssp TCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCT
T ss_pred CCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhh
Confidence 344444444444333 34445667778888887777762 334445567788888888877764 556677777
Q ss_pred CCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccc-cccCCCCCCCE
Q 005711 298 KLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIP-ARIGNLTYLQV 376 (681)
Q Consensus 298 ~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~ 376 (681)
+|++|+++........+.....+..+++|+.++++++.. +.+|..+..+++|++|++++|.+++... ..+..+++|++
T Consensus 244 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~ 322 (592)
T 3ogk_B 244 NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEV 322 (592)
T ss_dssp TCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCE
T ss_pred HHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCE
Confidence 888887775332211112222233334677777776533 3566666667777777777777654433 33566777777
Q ss_pred EEccCCcCccccCcccccCCCcceeeccc-----------ccccccC-ccccCCCCCccEEEcccCcceeccccccCC-C
Q 005711 377 IDLSHNMLSGSIPLNIVGCFQLLALIVNN-----------NNLSGEI-QPELDALDSLKILDISNNQISGEIPLTLAG-L 443 (681)
Q Consensus 377 L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~-----------n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-l 443 (681)
|+++++...+.++.....+++|++|++++ +.+++.. +.....+++|+.|+++.|.+++..+..+.. +
T Consensus 323 L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~ 402 (592)
T 3ogk_B 323 LETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYL 402 (592)
T ss_dssp EEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHC
T ss_pred EeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhC
Confidence 77773322223333334566677776662 3343321 111234566666666666666555544443 6
Q ss_pred CCCcEEECC----CCcCCCc-----chhhhhcCCCCCEEEccCCc--CcccCCcccc-cCCccceeecccCccccCCCCC
Q 005711 444 KSLEIVDFS----SNNLSGS-----LNDAITKWTNLKYFSIARNK--LSGNLPNWLF-SFQAIQMMDFSTNKFMGFIPDA 511 (681)
Q Consensus 444 ~~L~~L~L~----~n~l~~~-----~~~~~~~l~~L~~L~L~~n~--l~~~~p~~~~-~l~~L~~L~ls~n~~~~~~p~~ 511 (681)
++|++|+++ .|.+++. ++..+..+++|++|+++.|. +++..+..+. .+++|+.|++++|++++.
T Consensus 403 ~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~---- 478 (592)
T 3ogk_B 403 KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE---- 478 (592)
T ss_dssp CSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHH----
T ss_pred CCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHH----
Confidence 666666664 4555542 33344556666666665332 4433333332 245555555555443321
Q ss_pred cccccCCccccccCCcccccccccceeecCCCcCccc-CCC-cCCCCCCCEEECCCCcCcccCCccc-cCCCCCCeEecc
Q 005711 512 VGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQ-VPG-LYRLRSLRALDLSHNSLTGQIPGNI-SSLQELTLLNLS 588 (681)
Q Consensus 512 ~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~-ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~ls 588 (681)
.++..+..+++|++|+|++|.+++. ++. ...+++|+.|++++|++++.-...+ ..++.+....+.
T Consensus 479 ------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~ 546 (592)
T 3ogk_B 479 ------------GLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIP 546 (592)
T ss_dssp ------------HHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEEC
T ss_pred ------------HHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEec
Confidence 2334445667777777777776543 233 4456777777777777765533323 234555544444
Q ss_pred cC
Q 005711 589 YN 590 (681)
Q Consensus 589 ~N 590 (681)
.+
T Consensus 547 ~~ 548 (592)
T 3ogk_B 547 SR 548 (592)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=5.4e-29 Score=260.52 Aligned_cols=258 Identities=20% Similarity=0.179 Sum_probs=142.2
Q ss_pred CccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecc
Q 005711 325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVN 404 (681)
Q Consensus 325 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~ 404 (681)
+|++|++++|++++..+..+..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 45555555555543333344555555555555555554444445555555555555555543322234445555555555
Q ss_pred cccccccCc-cccCCCCCccEEEcccC-cceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcc
Q 005711 405 NNNLSGEIQ-PELDALDSLKILDISNN-QISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSG 482 (681)
Q Consensus 405 ~n~l~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 482 (681)
+|.+.+..+ ..+..+++|+.|++++| .+.+..+..+.++++|++|++++|.+++..|..+..+++|++|++++|.+..
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 212 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence 555543222 24455555555555555 2444444455555555555555555555555555555555555555555542
Q ss_pred cCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcc----cCCC-cCCCCC
Q 005711 483 NLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDG----QVPG-LYRLRS 557 (681)
Q Consensus 483 ~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~----~ip~-~~~l~~ 557 (681)
..+..+..+++|+.|++++|++++..+.. + ........++.++++++.+++ .+|. +..+++
T Consensus 213 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-------------l-~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~ 278 (353)
T 2z80_A 213 LLEIFVDVTSSVECLELRDTDLDTFHFSE-------------L-STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISG 278 (353)
T ss_dssp HHHHHHHHTTTEEEEEEESCBCTTCCCC--------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTT
T ss_pred chhhhhhhcccccEEECCCCccccccccc-------------c-ccccccchhhccccccccccCcchhhhHHHHhcccC
Confidence 22222233555555555555554322110 0 011223456666666666654 3555 778889
Q ss_pred CCEEECCCCcCcccCCcc-ccCCCCCCeEecccCcceeeCC
Q 005711 558 LRALDLSHNSLTGQIPGN-ISSLQELTLLNLSYNSFSGFVP 597 (681)
Q Consensus 558 L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~~~~p 597 (681)
|+.|++++|+++ .+|.. |..+++|++|++++|++.|.+|
T Consensus 279 L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 279 LLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 999999999998 55555 5888999999999999998876
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=6.6e-28 Score=247.04 Aligned_cols=249 Identities=22% Similarity=0.256 Sum_probs=173.4
Q ss_pred EEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCcc--ccCcccccCCCcceeeccc
Q 005711 328 LLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSG--SIPLNIVGCFQLLALIVNN 405 (681)
Q Consensus 328 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~p~~~~~~~~L~~L~l~~ 405 (681)
.++++++.++ .+|..+. ++|++|++++|.++...+..|.++++|++|++++|.++. ..+..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 4555555554 3443332 455666666666553333335556666666666665542 2244445556666666666
Q ss_pred ccccccCccccCCCCCccEEEcccCcceeccc-cccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcc-c
Q 005711 406 NNLSGEIQPELDALDSLKILDISNNQISGEIP-LTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSG-N 483 (681)
Q Consensus 406 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~ 483 (681)
|.+.+ ++..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ .
T Consensus 88 n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 88 NGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp CSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred Ccccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 65553 34446667777777777777775544 467777778888888877777777777777788888888887775 4
Q ss_pred CCcccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEE
Q 005711 484 LPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALD 562 (681)
Q Consensus 484 ~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~ 562 (681)
+|..+..+++|+.|++++|++. +..|..+..+++|++|+|++|++++..+. +..+++|+.|+
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~-----------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 229 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLE-----------------QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 229 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCC-----------------EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEE
T ss_pred chhHHhhCcCCCEEECCCCCcC-----------------CcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeE
Confidence 6677777777777766666554 34567778888999999999999876665 88899999999
Q ss_pred CCCCcCcccCCccccCCC-CCCeEecccCcceeeCC
Q 005711 563 LSHNSLTGQIPGNISSLQ-ELTLLNLSYNSFSGFVP 597 (681)
Q Consensus 563 Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~~~~p 597 (681)
+++|++++..|..+..++ +|++|++++|++.|.++
T Consensus 230 L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 230 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp CTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred CCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 999999999999998884 89999999999998765
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=4.9e-27 Score=254.16 Aligned_cols=251 Identities=21% Similarity=0.205 Sum_probs=184.0
Q ss_pred ccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeeccc
Q 005711 326 LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNN 405 (681)
Q Consensus 326 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~ 405 (681)
...++.++..++ .+|..+. +++++|+|++|.+++..+..|.++++|++|++++|.+++..+..+.++++|++|++++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 344555555555 3454333 4666666666666666666666666666666666666666666666666666666666
Q ss_pred ccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcch-hhhhcCCCCCEEEccCCcCcccC
Q 005711 406 NNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLN-DAITKWTNLKYFSIARNKLSGNL 484 (681)
Q Consensus 406 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~ 484 (681)
|.+++..+..+..+++|+.|++++|.+++..+..|.++++|++|++++|+..+.++ ..+..+++|++|++++|.+++ +
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~ 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-M 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-C
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-c
Confidence 66666555667777888888888888876666677888888888888854443443 457778888888888888874 3
Q ss_pred CcccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEEC
Q 005711 485 PNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDL 563 (681)
Q Consensus 485 p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~L 563 (681)
| .+..+++|+.|++++|++ ++..|..+.++++|+.|+|++|++++..|. +..+++|+.|+|
T Consensus 212 ~-~~~~l~~L~~L~Ls~N~l-----------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 273 (452)
T 3zyi_A 212 P-NLTPLVGLEELEMSGNHF-----------------PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNL 273 (452)
T ss_dssp C-CCTTCTTCCEEECTTSCC-----------------SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred c-cccccccccEEECcCCcC-----------------cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEEC
Confidence 3 355566666665555544 446678888999999999999999988887 888999999999
Q ss_pred CCCcCcccCCccccCCCCCCeEecccCcceeeCCC
Q 005711 564 SHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPW 598 (681)
Q Consensus 564 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 598 (681)
++|++++..+..+..+++|+.|++++|++.|.+..
T Consensus 274 ~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 274 AHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp CSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred CCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 99999988888889999999999999999988763
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=6e-27 Score=252.55 Aligned_cols=251 Identities=21% Similarity=0.214 Sum_probs=184.3
Q ss_pred ccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeeccc
Q 005711 326 LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNN 405 (681)
Q Consensus 326 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~ 405 (681)
...++.++..++ .+|..+. ++++.|+|++|++++..+..|.++++|++|++++|.+++..+..|.++++|++|++++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 345555555555 4554443 4566666666666665556666666666666666666655556666666666666666
Q ss_pred ccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcc-hhhhhcCCCCCEEEccCCcCcccC
Q 005711 406 NNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSL-NDAITKWTNLKYFSIARNKLSGNL 484 (681)
Q Consensus 406 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~ 484 (681)
|.+++..+..+..+++|+.|++++|.+++..+..|.++++|++|++++|+..+.+ +..+..+++|++|++++|.++ .+
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~ 200 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EI 200 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cc
Confidence 6666555556777788888888888887666667788888888888885444344 346778888888888888887 44
Q ss_pred CcccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEEC
Q 005711 485 PNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDL 563 (681)
Q Consensus 485 p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~L 563 (681)
| .+..+++|+.|++++|++ ++..|..+.++++|+.|+|++|++++..+. +.++++|+.|+|
T Consensus 201 ~-~~~~l~~L~~L~Ls~N~l-----------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 262 (440)
T 3zyj_A 201 P-NLTPLIKLDELDLSGNHL-----------------SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINL 262 (440)
T ss_dssp C-CCTTCSSCCEEECTTSCC-----------------CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEEC
T ss_pred c-ccCCCcccCEEECCCCcc-----------------CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEEC
Confidence 4 355666666666555544 445677888999999999999999988887 889999999999
Q ss_pred CCCcCcccCCccccCCCCCCeEecccCcceeeCCC
Q 005711 564 SHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPW 598 (681)
Q Consensus 564 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 598 (681)
++|++++..+..+..+++|+.|++++|++.|.+..
T Consensus 263 ~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 263 AHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp TTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred CCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence 99999988888889999999999999999988753
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=2.4e-27 Score=242.92 Aligned_cols=247 Identities=23% Similarity=0.231 Sum_probs=164.3
Q ss_pred EEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCcccc--CCChhhcccCcccEEecCCCccc
Q 005711 209 LDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVG--GIPTCIASLQALTHLNLSHNHLN 286 (681)
Q Consensus 209 L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~ 286 (681)
++++++.++........++++|++++|+++...+..+..+++|++|++++|.++. ..+..+..+++|++|++++|.++
T Consensus 12 l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~ 91 (306)
T 2z66_A 12 IRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 91 (306)
T ss_dssp EECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE
T ss_pred EEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc
Confidence 3444444433333333345555555555553333446677777888887777763 23556667778888888888776
Q ss_pred cccCccccCCCCCcEEeccCCCccCCCC-hhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCcccc-cc
Q 005711 287 YEISPRLVFFEKLLLLDLSFNDLSGPLP-SKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIG-EI 364 (681)
Q Consensus 287 ~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~ 364 (681)
.+|..+..+++|++|++++|.+++..+ ..+..+. +|++|++++|.+++..+..+..+++|++|++++|.+++ ..
T Consensus 92 -~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~---~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 167 (306)
T 2z66_A 92 -TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR---NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167 (306)
T ss_dssp -EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCT---TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred -cChhhcCCCCCCCEEECCCCcccccccchhhhhcc---CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc
Confidence 455667777788888888877775433 3344443 77777777777777777777777777888887777765 46
Q ss_pred ccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCC
Q 005711 365 PARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLK 444 (681)
Q Consensus 365 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 444 (681)
|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..|..+..++
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 247 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 247 (306)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCC
T ss_pred hhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhh
Confidence 66777777777777777777776666676777777777777777666555666677777777777777766666666663
Q ss_pred -CCcEEECCCCcCCCc
Q 005711 445 -SLEIVDFSSNNLSGS 459 (681)
Q Consensus 445 -~L~~L~L~~n~l~~~ 459 (681)
+|++|++++|++++.
T Consensus 248 ~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 248 SSLAFLNLTQNDFACT 263 (306)
T ss_dssp TTCCEEECTTCCEECS
T ss_pred ccCCEEEccCCCeecc
Confidence 677777777776643
No 58
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.9e-27 Score=245.48 Aligned_cols=232 Identities=21% Similarity=0.239 Sum_probs=172.2
Q ss_pred CccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecc
Q 005711 325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVN 404 (681)
Q Consensus 325 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~ 404 (681)
.++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..++++++|++|++++|.++ .+|..+..+++|+.|+++
T Consensus 82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 6777888888777 66767777777778888777777 67777777777777777777777 566666666666666666
Q ss_pred cccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccC
Q 005711 405 NNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNL 484 (681)
Q Consensus 405 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 484 (681)
+|++.+.+|..+.. . ..+..+.++++|++|++++|+++ .+|..+..+++|++|++++|.+++ +
T Consensus 159 ~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l 221 (328)
T 4fcg_A 159 ACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-L 221 (328)
T ss_dssp EETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-C
T ss_pred CCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-C
Confidence 66666666554332 0 01122344777777777777777 666777777777777777777774 5
Q ss_pred CcccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEEC
Q 005711 485 PNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDL 563 (681)
Q Consensus 485 p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~L 563 (681)
|..+..+++|+.|++++|++.+ .+|..++.+++|++|+|++|++.+.+|. +.++++|+.|++
T Consensus 222 ~~~l~~l~~L~~L~Ls~n~~~~-----------------~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 284 (328)
T 4fcg_A 222 GPAIHHLPKLEELDLRGCTALR-----------------NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284 (328)
T ss_dssp CGGGGGCTTCCEEECTTCTTCC-----------------BCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEEC
T ss_pred chhhccCCCCCEEECcCCcchh-----------------hhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeC
Confidence 5567777777777666665543 6677788888999999999988888887 888999999999
Q ss_pred CCCcCcccCCccccCCCCCCeEecccCcce
Q 005711 564 SHNSLTGQIPGNISSLQELTLLNLSYNSFS 593 (681)
Q Consensus 564 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 593 (681)
++|++.+.+|..+..+++|+.+++..|.+.
T Consensus 285 ~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 285 RGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 999999999999999999999998877654
No 59
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=2.9e-28 Score=250.16 Aligned_cols=249 Identities=22% Similarity=0.214 Sum_probs=151.3
Q ss_pred ccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCc-CCCccccc-------CCCCCCEEeccCCcccccc
Q 005711 293 LVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFS-GEIPLKIT-------ELKSLQALFLSNNLLIGEI 364 (681)
Q Consensus 293 l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~-~~~p~~l~-------~l~~L~~L~L~~n~l~~~~ 364 (681)
++..++|+.+++++|.+ .+|..+.. .|+.|++++|.++ +.+|..+. .+++|++|++++|.+++.+
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~-----~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 111 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTD-----IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTA 111 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHH-----HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHH-----HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchh
Confidence 34456677777777777 66766554 3777778888773 44555544 6788888888888888888
Q ss_pred cccc--CCCCCCCEEEccCCcCccccCcccccC-----CCcceeecccccccccCccccCCCCCccEEEcccCcceec--
Q 005711 365 PARI--GNLTYLQVIDLSHNMLSGSIPLNIVGC-----FQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGE-- 435 (681)
Q Consensus 365 ~~~l--~~l~~L~~L~Ls~n~l~~~~p~~~~~~-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-- 435 (681)
|..+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.+.+..+..+..+++|+.|++++|++.+.
T Consensus 112 ~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 190 (312)
T 1wwl_A 112 PPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190 (312)
T ss_dssp CCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH
T ss_pred HHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH
Confidence 8776 7888888888888888876 6666554 5666666666666655555666666666666666665543
Q ss_pred ccccc--CCCCCCcEEECCCCcCCC--cch-hhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccCCCC
Q 005711 436 IPLTL--AGLKSLEIVDFSSNNLSG--SLN-DAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPD 510 (681)
Q Consensus 436 ~p~~~--~~l~~L~~L~L~~n~l~~--~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~ 510 (681)
.+..+ ..+++|++|++++|++++ .++ ..+..+++|++|++++|++++..|.
T Consensus 191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------------------ 246 (312)
T 1wwl_A 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA------------------------ 246 (312)
T ss_dssp HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC------------------------
T ss_pred HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch------------------------
Confidence 22223 556666666666666652 112 2234455666666666555543321
Q ss_pred CcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEeccc
Q 005711 511 AVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSY 589 (681)
Q Consensus 511 ~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 589 (681)
..+..+++|++|+|++|+++ .+|. +. ++|+.||+++|++++. |. +..+++|++|++++
T Consensus 247 ----------------~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 247 ----------------PSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKG 305 (312)
T ss_dssp ----------------SCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTT
T ss_pred ----------------hhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccC
Confidence 12223445555555555555 3444 33 5555555555555544 43 55555555566666
Q ss_pred Cccee
Q 005711 590 NSFSG 594 (681)
Q Consensus 590 N~l~~ 594 (681)
|++++
T Consensus 306 N~l~~ 310 (312)
T 1wwl_A 306 NPFLD 310 (312)
T ss_dssp CTTTC
T ss_pred CCCCC
Confidence 55543
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.9e-27 Score=240.97 Aligned_cols=233 Identities=20% Similarity=0.188 Sum_probs=139.2
Q ss_pred CCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeeccccc-ccccCccccCCCCCccEEEc
Q 005711 349 SLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNN-LSGEIQPELDALDSLKILDI 427 (681)
Q Consensus 349 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L 427 (681)
+|++|++++|.+++..+..+.++++|++|++++|.+++..|..+..+++|++|++++|. +....+..+..+++|+.|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 44444444444444444444444455555555554444444444444555555555554 33333445556666666666
Q ss_pred ccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccC
Q 005711 428 SNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGF 507 (681)
Q Consensus 428 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~ 507 (681)
++|.+++..|..+.++++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.+
T Consensus 113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~- 191 (285)
T 1ozn_A 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH- 191 (285)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-
T ss_pred CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc-
Confidence 6666665556666666666666666666665555556666666666666666665444456666666666655554432
Q ss_pred CCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEe
Q 005711 508 IPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLN 586 (681)
Q Consensus 508 ~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 586 (681)
..|..+.++++|++|++++|++++..+. +..+++|+.|++++|.+.+..+.. .-...++.+.
T Consensus 192 ----------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~ 254 (285)
T 1ozn_A 192 ----------------VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFR 254 (285)
T ss_dssp ----------------ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCC
T ss_pred ----------------cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcc
Confidence 4466677777888888888888765555 777888888888888877654421 1123345555
Q ss_pred cccCcceeeCCCC
Q 005711 587 LSYNSFSGFVPWK 599 (681)
Q Consensus 587 ls~N~l~~~~p~~ 599 (681)
.+.+.+.|..|..
T Consensus 255 ~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 255 GSSSEVPCSLPQR 267 (285)
T ss_dssp SEECCCBEEESGG
T ss_pred cccCccccCCchH
Confidence 6777888877753
No 61
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=1.2e-26 Score=257.61 Aligned_cols=288 Identities=24% Similarity=0.272 Sum_probs=206.1
Q ss_pred CCCC-CCCCCCCCCceee------cCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCC
Q 005711 61 LSSW-VGSNCTNWTGVAC------NFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLK 133 (681)
Q Consensus 61 ~~~w-~~~~cc~w~gv~c------~~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 133 (681)
.+.| ...+||.|+|..| ......++.|+++++.++ .+|..+. ++|++|++++|.+++ +|. .+++|+
T Consensus 12 w~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~ 84 (622)
T 3g06_A 12 WSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELR 84 (622)
T ss_dssp HHHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCC
T ss_pred HHHHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCC
Confidence 3456 4578899976432 112235888999999988 6777666 799999999999984 555 578999
Q ss_pred EEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccC
Q 005711 134 TLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEK 213 (681)
Q Consensus 134 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 213 (681)
+|+|++|+++ .+|. .+++|++|++++|++ . .+|. .+ ++|++|++++|.+++ +|.. +++|++|++++
T Consensus 85 ~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l-~-~l~~---~l-~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~ 150 (622)
T 3g06_A 85 TLEVSGNQLT-SLPV---LPPGLLELSIFSNPL-T-HLPA---LP-SGLCKLWIFGNQLTS-LPVL---PPGLQELSVSD 150 (622)
T ss_dssp EEEECSCCCS-CCCC---CCTTCCEEEECSCCC-C-CCCC---CC-TTCCEEECCSSCCSC-CCCC---CTTCCEEECCS
T ss_pred EEEcCCCcCC-cCCC---CCCCCCEEECcCCcC-C-CCCC---CC-CCcCEEECCCCCCCc-CCCC---CCCCCEEECcC
Confidence 9999999998 4665 678999999999954 2 2444 33 789999999999884 6654 48899999999
Q ss_pred ccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccc
Q 005711 214 NNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRL 293 (681)
Q Consensus 214 n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l 293 (681)
|.+++. |..+.+|+.|++++|.+++ +| ..+++|+.|++++|.+++ +|.. +++|+.|++++|.++ .+|.
T Consensus 151 N~l~~l-~~~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~-- 218 (622)
T 3g06_A 151 NQLASL-PALPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPA-- 218 (622)
T ss_dssp SCCSCC-CCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCC--
T ss_pred CcCCCc-CCccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCC--
Confidence 988864 4456778888888888875 44 446778888888888774 4432 467778888888776 3333
Q ss_pred cCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCC
Q 005711 294 VFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTY 373 (681)
Q Consensus 294 ~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 373 (681)
.+++|+.|++++|.+++ +|. . .++|+.|++++|+++ .+|. .+++|+.|++++|+++ .+|..+.++++
T Consensus 219 -~~~~L~~L~Ls~N~L~~-lp~---~---l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~ 285 (622)
T 3g06_A 219 -LPSGLKELIVSGNRLTS-LPV---L---PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSS 285 (622)
T ss_dssp -CCTTCCEEECCSSCCSC-CCC---C---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCT
T ss_pred -CCCCCCEEEccCCccCc-CCC---C---CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccc
Confidence 24677777777777764 441 1 126777777777777 4554 4567777777777777 55666777777
Q ss_pred CCEEEccCCcCccccCccccc
Q 005711 374 LQVIDLSHNMLSGSIPLNIVG 394 (681)
Q Consensus 374 L~~L~Ls~n~l~~~~p~~~~~ 394 (681)
|+.|++++|.+++..|..+..
T Consensus 286 L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 286 ETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp TCEEECCSCCCCHHHHHHHHH
T ss_pred cCEEEecCCCCCCcCHHHHHh
Confidence 777777777777766665543
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=3.4e-26 Score=231.69 Aligned_cols=225 Identities=22% Similarity=0.195 Sum_probs=163.4
Q ss_pred CEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEc
Q 005711 252 TVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDL 331 (681)
Q Consensus 252 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~L 331 (681)
++++.+++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+. +|++|++
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~---~L~~L~l 87 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA---LLEQLDL 87 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT---TCCEEEC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCcc---CCCEEeC
Confidence 57777777776 355433 46788888888888876667778888888888888888766666666655 7888888
Q ss_pred cCCC-CcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccc
Q 005711 332 SHNR-FSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSG 410 (681)
Q Consensus 332 s~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~ 410 (681)
++|. +++..|..+..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|+.|++++|.+++
T Consensus 88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence 8886 665557777777888888888888777767777777888888888887776555556667777777777777766
Q ss_pred cCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcc
Q 005711 411 EIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSG 482 (681)
Q Consensus 411 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 482 (681)
..+..+..+++|+.|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|++++|.+..
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 555556667777777777777776666677777777777777777776655666667777777777776654
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=7.6e-28 Score=247.62 Aligned_cols=242 Identities=20% Similarity=0.220 Sum_probs=162.6
Q ss_pred CccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecc
Q 005711 325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVN 404 (681)
Q Consensus 325 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~ 404 (681)
+|+.|++++|++++..|..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++.. ..++|+.|+++
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~ 107 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEECC
Confidence 56666666666665555566666666666666666655443 566666666666666665322 22566666666
Q ss_pred cccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhh-hcCCCCCEEEccCCcCccc
Q 005711 405 NNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAI-TKWTNLKYFSIARNKLSGN 483 (681)
Q Consensus 405 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~ 483 (681)
+|.+.+..+. .+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++.
T Consensus 108 ~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 184 (317)
T 3o53_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (317)
T ss_dssp SSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc
Confidence 6666554433 24667888888888877667677777888888888888876666655 3677888888888877643
Q ss_pred CCcccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEE
Q 005711 484 LPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALD 562 (681)
Q Consensus 484 ~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~ 562 (681)
+. ...+++|+.|++++|+++ .+|..+..+++|++|+|++|++++ +|. +..+++|+.|+
T Consensus 185 -~~-~~~l~~L~~L~Ls~N~l~------------------~l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~ 243 (317)
T 3o53_A 185 -KG-QVVFAKLKTLDLSSNKLA------------------FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFD 243 (317)
T ss_dssp -EC-CCCCTTCCEEECCSSCCC------------------EECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEE
T ss_pred -cc-ccccccCCEEECCCCcCC------------------cchhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEE
Confidence 22 223556666555555544 445557788888888888888884 455 77788888888
Q ss_pred CCCCcCc-ccCCccccCCCCCCeEecccC-cceeeCC
Q 005711 563 LSHNSLT-GQIPGNISSLQELTLLNLSYN-SFSGFVP 597 (681)
Q Consensus 563 Ls~N~l~-~~~p~~l~~l~~L~~L~ls~N-~l~~~~p 597 (681)
+++|.++ +.+|..+..++.|+.+++++| .+.|..|
T Consensus 244 l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 244 LRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp CTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred ccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 8888888 777777888888888888844 4555443
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=4e-28 Score=249.13 Aligned_cols=248 Identities=21% Similarity=0.235 Sum_probs=145.5
Q ss_pred CccEEEccCCCCcCCCcccccCCCCCCEEeccCCcc-ccccccccC-------CCCCCCEEEccCCcCccccCccc--cc
Q 005711 325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLL-IGEIPARIG-------NLTYLQVIDLSHNMLSGSIPLNI--VG 394 (681)
Q Consensus 325 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l-~~~~~~~l~-------~l~~L~~L~Ls~n~l~~~~p~~~--~~ 394 (681)
+|+.+++++|.+ .+|..+... |+.|++++|.+ .+.+|..+. ++++|++|++++|.+++.+|..+ ..
T Consensus 44 ~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 44 SLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp ECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 466666666666 455544432 66666666666 333444333 45666666666666665555544 44
Q ss_pred CCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEE
Q 005711 395 CFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFS 474 (681)
Q Consensus 395 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 474 (681)
+++|++|++++|.+++. |..+..+. ...+++|++|++++|++++..+..+..+++|++|+
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~-------------------~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 179 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQ-------------------QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLD 179 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHH-------------------TTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEE
T ss_pred CCCccEEEccCCCCcch-hHHHHHHH-------------------HhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEE
Confidence 55555555555555444 33333330 00014444444444444444444444445555555
Q ss_pred ccCCcCccc--CCccc--ccCCccceeecccCccccCCCCCcccccCCccccccCC-cccccccccceeecCCCcCcccC
Q 005711 475 IARNKLSGN--LPNWL--FSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIP-KGLFQLQGLEYLNLSFNFLDGQV 549 (681)
Q Consensus 475 L~~n~l~~~--~p~~~--~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip-~~l~~l~~L~~L~Ls~N~l~~~i 549 (681)
+++|++.+. .|..+ ..+++|+.|++++|++.+. +.++ ..+.++++|++|++++|++++.+
T Consensus 180 Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~---------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 244 (312)
T 1wwl_A 180 LSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP---------------SGVCSALAAARVQLQGLDLSHNSLRDAA 244 (312)
T ss_dssp CCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCH---------------HHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred CCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcch---------------HHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence 555544432 12222 4455555555555544310 0122 22346789999999999999877
Q ss_pred CC--cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcceeeCCCCCCCCCccc-cccCCCCC
Q 005711 550 PG--LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQKFPG-AFAGNPNL 615 (681)
Q Consensus 550 p~--~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~-~~~gn~~l 615 (681)
|. +..+++|+.|++++|+++ .+|..+. ++|++||+++|++++. |....+..+.. .+.+|+..
T Consensus 245 ~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 245 GAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTT
T ss_pred chhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCC
Confidence 53 667899999999999999 7888776 8999999999999987 55334444444 77888643
No 65
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=1.3e-29 Score=284.87 Aligned_cols=460 Identities=13% Similarity=0.091 Sum_probs=233.5
Q ss_pred CCCCCCceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCcc---cc------------ccccCCCCC
Q 005711 68 NCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGR---IS------------TCFGGLSGL 132 (681)
Q Consensus 68 ~cc~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~---~~------------~~~~~l~~L 132 (681)
-|.+|.++... ..+++++...... .....+..+++|++|+++++..... .| .....+++|
T Consensus 33 vck~W~~~~~~----~~~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L 107 (594)
T 2p1m_B 33 VCKSWYEIERW----CRRKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWL 107 (594)
T ss_dssp SCHHHHHHHHH----HCCEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTC
T ss_pred HHHHHHHhhhh----hceEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCC
Confidence 46678776221 2334555543321 1122456778899999988753211 11 223467788
Q ss_pred CEEEccCCCCCCcCCcccc-CCCCCCEeeCCCCCCCCcc-CCchhccccCCccEEEccCCcCccccCcccc----CCCCC
Q 005711 133 KTLDLSYNKFVGVVPDAIM-KLRNLRELILKGNPELGGV-FPGWVGNFSMNLEKLDFSFNSFCGEIPESLY----YLKSL 206 (681)
Q Consensus 133 ~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~~~~~~-~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~----~l~~L 206 (681)
++|+|++|.+++..+..+. .+++|++|++++|..++.. ++....++ ++|++|++++|.+++..+..+. .+++|
T Consensus 108 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~-~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L 186 (594)
T 2p1m_B 108 EEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATC-RNLKELDLRESDVDDVSGHWLSHFPDTYTSL 186 (594)
T ss_dssp CEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHC-TTCCEEECTTCEEECCCGGGGGGSCTTCCCC
T ss_pred CeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhC-CCCCEEeCcCCccCCcchHHHHHHhhcCCcC
Confidence 8888888887766666664 5778888888777322221 33333355 6777777777776544333332 45566
Q ss_pred CEEEccCccCcccccCcCCcccEEECCCCCCcc-ccchhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCc-
Q 005711 207 KHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSG-TLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNH- 284 (681)
Q Consensus 207 ~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~- 284 (681)
++|++++|. .. ++. .++.....+++|++|++++|...+.++..+..+++|++|+++.+.
T Consensus 187 ~~L~l~~~~-~~------------------~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 247 (594)
T 2p1m_B 187 VSLNISCLA-SE------------------VSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTA 247 (594)
T ss_dssp CEEECTTCC-SC------------------CCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCC
T ss_pred cEEEecccC-Cc------------------CCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccC
Confidence 666666654 10 110 122223445666666666662222355556666666666644432
Q ss_pred ------cccccCccccCCCCCcEE-eccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCC-cccccCCCCCCEEecc
Q 005711 285 ------LNYEISPRLVFFEKLLLL-DLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEI-PLKITELKSLQALFLS 356 (681)
Q Consensus 285 ------l~~~~~~~l~~l~~L~~L-~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~ 356 (681)
+.+ ++..+..+++|+.+ .+..... +.++..+..+. +|+.|++++|.+++.. +..+..+++|++|+++
T Consensus 248 ~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~---~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~ 322 (594)
T 2p1m_B 248 EVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCS---RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVL 322 (594)
T ss_dssp CCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHT---TCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred ccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhC---CCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCc
Confidence 222 33355667777766 3332221 22333333333 6777777777765432 2224566777777777
Q ss_pred CCccccc-cccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCcccc-CCCCCccEEEcccCccee
Q 005711 357 NNLLIGE-IPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPEL-DALDSLKILDISNNQISG 434 (681)
Q Consensus 357 ~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~ 434 (681)
+| +... ++.....+++|++|+++++.-.| ....+.+++.....+ ..+++|+.|.+..|.+++
T Consensus 323 ~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g---------------~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~ 386 (594)
T 2p1m_B 323 DY-IEDAGLEVLASTCKDLRELRVFPSEPFV---------------MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTN 386 (594)
T ss_dssp GG-GHHHHHHHHHHHCTTCCEEEEECSCTTC---------------SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCH
T ss_pred Cc-cCHHHHHHHHHhCCCCCEEEEecCcccc---------------cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCH
Confidence 66 3322 22222346677777764321000 000111111111111 124455555555555544
Q ss_pred ccccccC-CCCCCcEEECC--C----CcCCC-----cchhhhhcCCCCCEEEccCCcCcccCCccccc-CCccceeeccc
Q 005711 435 EIPLTLA-GLKSLEIVDFS--S----NNLSG-----SLNDAITKWTNLKYFSIARNKLSGNLPNWLFS-FQAIQMMDFST 501 (681)
Q Consensus 435 ~~p~~~~-~l~~L~~L~L~--~----n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~ls~ 501 (681)
..+..+. .+++|+.|+++ + +.+++ .++..+..+++|++|++++ .+++..+..+.. +++|+.|++++
T Consensus 387 ~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~ 465 (594)
T 2p1m_B 387 AALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAF 465 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEES
T ss_pred HHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccC
Confidence 4333332 35555555555 2 33331 1222345566666666655 444433333333 56666666666
Q ss_pred CccccCCCCCcccccCCccccccCCccc-ccccccceeecCCCcCcccCCC--cCCCCCCCEEECCCCcCcccCCccc-c
Q 005711 502 NKFMGFIPDAVGMDLSDNLLHGTIPKGL-FQLQGLEYLNLSFNFLDGQVPG--LYRLRSLRALDLSHNSLTGQIPGNI-S 577 (681)
Q Consensus 502 n~~~~~~p~~~~L~Ls~N~l~g~ip~~l-~~l~~L~~L~Ls~N~l~~~ip~--~~~l~~L~~L~Ls~N~l~~~~p~~l-~ 577 (681)
|.+++ ..+..+ ..+++|++|+|++|.+++.... ...+++|+.|++++|.++......+ .
T Consensus 466 ~~i~~-----------------~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 528 (594)
T 2p1m_B 466 AGDSD-----------------LGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQ 528 (594)
T ss_dssp CCSSH-----------------HHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHH
T ss_pred CCCcH-----------------HHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHH
Confidence 55432 111222 3466777777777776543322 3346777777777777654333333 3
Q ss_pred CCCCCCeEecccCc
Q 005711 578 SLQELTLLNLSYNS 591 (681)
Q Consensus 578 ~l~~L~~L~ls~N~ 591 (681)
.++.|+...+..+.
T Consensus 529 ~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 529 KMPKLNVEVIDERG 542 (594)
T ss_dssp HCTTEEEEEECSSS
T ss_pred hCCCCEEEEecCCC
Confidence 45666555555443
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.1e-27 Score=246.50 Aligned_cols=262 Identities=20% Similarity=0.165 Sum_probs=136.3
Q ss_pred ECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCc
Q 005711 112 VLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNS 191 (681)
Q Consensus 112 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~ 191 (681)
+++.+.+...+...+..+++|++|+|++|.+++..|..|.++++|++|++++|.+ .+..+ +..+ ++|++|++++|.
T Consensus 16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~--~~~l-~~L~~L~Ls~n~ 91 (317)
T 3o53_A 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL-YETLD--LESL-STLRTLDLNNNY 91 (317)
T ss_dssp SCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCC-EEEEE--ETTC-TTCCEEECCSSE
T ss_pred eccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcC-Ccchh--hhhc-CCCCEEECcCCc
Confidence 3333333333333333444444444444444444334444444444444444421 11111 3333 455555555555
Q ss_pred CccccCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhh-c
Q 005711 192 FCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCI-A 270 (681)
Q Consensus 192 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l-~ 270 (681)
+++. + ..++|++|++++|.+++..+..+.+|++|++++|++++..+..+..+++|++|++++|.+++..+..+ .
T Consensus 92 l~~l-~----~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 166 (317)
T 3o53_A 92 VQEL-L----VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166 (317)
T ss_dssp EEEE-E----ECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGG
T ss_pred cccc-c----CCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhh
Confidence 5421 1 22567777777777666655555556666666666665555555566666666666666655444444 2
Q ss_pred ccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCC
Q 005711 271 SLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSL 350 (681)
Q Consensus 271 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L 350 (681)
.+++|++|++++|.+++. + ....++ +|+.|++++|++++ +|..+..+++|
T Consensus 167 ~l~~L~~L~L~~N~l~~~-~-~~~~l~---------------------------~L~~L~Ls~N~l~~-l~~~~~~l~~L 216 (317)
T 3o53_A 167 SSDTLEHLNLQYNFIYDV-K-GQVVFA---------------------------KLKTLDLSSNKLAF-MGPEFQSAAGV 216 (317)
T ss_dssp GTTTCCEEECTTSCCCEE-E-CCCCCT---------------------------TCCEEECCSSCCCE-ECGGGGGGTTC
T ss_pred ccCcCCEEECCCCcCccc-c-cccccc---------------------------cCCEEECCCCcCCc-chhhhcccCcc
Confidence 455555555555555432 1 111233 45555555555553 33335555666
Q ss_pred CEEeccCCccccccccccCCCCCCCEEEccCCcCc-cccCcccccCCCcceeeccc-ccccccCc
Q 005711 351 QALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLS-GSIPLNIVGCFQLLALIVNN-NNLSGEIQ 413 (681)
Q Consensus 351 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~~~~~L~~L~l~~-n~l~~~~~ 413 (681)
++|++++|.++ .+|..+..+++|+.|++++|.+. +.+|..+..+++|+.+++.+ +.+.+..+
T Consensus 217 ~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp SEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred cEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 66666666665 34555666666666666666666 55556666666666666663 33444443
No 67
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=4.1e-25 Score=239.04 Aligned_cols=226 Identities=24% Similarity=0.194 Sum_probs=123.4
Q ss_pred ccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccC
Q 005711 227 LLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSF 306 (681)
Q Consensus 227 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 306 (681)
+++|++++|++++..+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++
T Consensus 77 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 156 (452)
T 3zyi_A 77 TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRN 156 (452)
T ss_dssp CSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCS
T ss_pred ccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCC
Confidence 44444444444444455555555666666666655555555555555555555555555544444444455555555555
Q ss_pred CCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCcccccc-ccccCCCCCCCEEEccCCcCc
Q 005711 307 NDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEI-PARIGNLTYLQVIDLSHNMLS 385 (681)
Q Consensus 307 n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~ 385 (681)
|.+++ ..+..+..+++|++|++++|...+.+ +..+.++++|++|++++|.++
T Consensus 157 N~l~~---------------------------~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 209 (452)
T 3zyi_A 157 NPIES---------------------------IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209 (452)
T ss_dssp CCCCE---------------------------ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CCcce---------------------------eCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence 54443 22333444444444444442222222 223444455555555555544
Q ss_pred cccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhh
Q 005711 386 GSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAIT 465 (681)
Q Consensus 386 ~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 465 (681)
+ +| .+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++++..+..|.++++|++|++++|++++..+..+.
T Consensus 210 ~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 287 (452)
T 3zyi_A 210 D-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT 287 (452)
T ss_dssp S-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSST
T ss_pred c-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhc
Confidence 3 22 244445555555555555555555566666677777777777666666666777777777777777665556666
Q ss_pred cCCCCCEEEccCCcCc
Q 005711 466 KWTNLKYFSIARNKLS 481 (681)
Q Consensus 466 ~l~~L~~L~L~~n~l~ 481 (681)
.+++|+.|++++|.+.
T Consensus 288 ~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 288 PLRYLVELHLHHNPWN 303 (452)
T ss_dssp TCTTCCEEECCSSCEE
T ss_pred cccCCCEEEccCCCcC
Confidence 6777777777777665
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.9e-26 Score=250.98 Aligned_cols=234 Identities=21% Similarity=0.216 Sum_probs=136.8
Q ss_pred CccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecc
Q 005711 325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVN 404 (681)
Q Consensus 325 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~ 404 (681)
+|+.|++++|.+++..|..+..+++|++|+|++|.+++..| +..+++|++|++++|.+++..+ .++|+.|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECc
Confidence 57777777777776666677777777777777777766554 6677777777777777664322 2556666666
Q ss_pred cccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhh-cCCCCCEEEccCCcCccc
Q 005711 405 NNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAIT-KWTNLKYFSIARNKLSGN 483 (681)
Q Consensus 405 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~ 483 (681)
+|.+++..+. .+++|+.|++++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|++|+|++|.+++.
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 6666554432 235666666666666666666666666666666666666665565554 566666666666666543
Q ss_pred CCcccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCCcCCCCCCCEEEC
Q 005711 484 LPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDL 563 (681)
Q Consensus 484 ~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~L 563 (681)
.+ ...+++|+.|++++|.++ .+|+.+..+++|+.|+|++|.+++..+.+..+++|+.|++
T Consensus 185 ~~--~~~l~~L~~L~Ls~N~l~------------------~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l 244 (487)
T 3oja_A 185 KG--QVVFAKLKTLDLSSNKLA------------------FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDL 244 (487)
T ss_dssp EC--CCCCTTCCEEECCSSCCC------------------EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEEC
T ss_pred cc--cccCCCCCEEECCCCCCC------------------CCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEc
Confidence 11 112444444444333332 2333355555666666666666542222555556666666
Q ss_pred CCCcCc-ccCCccccCCCCCCeEecc
Q 005711 564 SHNSLT-GQIPGNISSLQELTLLNLS 588 (681)
Q Consensus 564 s~N~l~-~~~p~~l~~l~~L~~L~ls 588 (681)
++|.+. +.+|..+..++.|+.++++
T Consensus 245 ~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 245 RGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCcCcchHHHHHhCCCCcEEecc
Confidence 666555 4445555555555555544
No 69
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=5.9e-25 Score=236.95 Aligned_cols=246 Identities=22% Similarity=0.191 Sum_probs=134.4
Q ss_pred CEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCccc
Q 005711 207 KHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLN 286 (681)
Q Consensus 207 ~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 286 (681)
+.++.++..++........+++.|+|++|++++..+..+.++++|++|++++|.+.+..+..+.++++|++|++++|.++
T Consensus 46 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~ 125 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125 (440)
T ss_dssp CEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS
T ss_pred CEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC
Confidence 34444444444333323333444444444444444455555555555555555555444455555555555555555554
Q ss_pred cccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCcccccc-c
Q 005711 287 YEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEI-P 365 (681)
Q Consensus 287 ~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-~ 365 (681)
...+..+..+++|++|++++|.+ ++..+..+..+++|++|++++|...+.+ +
T Consensus 126 ~~~~~~~~~l~~L~~L~L~~N~i---------------------------~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~ 178 (440)
T 3zyj_A 126 TIPNGAFVYLSKLKELWLRNNPI---------------------------ESIPSYAFNRIPSLRRLDLGELKRLSYISE 178 (440)
T ss_dssp SCCTTTSCSCSSCCEEECCSCCC---------------------------CEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred eeCHhHhhccccCceeeCCCCcc---------------------------cccCHHHhhhCcccCEeCCCCCCCcceeCc
Confidence 33333444444444444444444 4333334444455555555543222222 2
Q ss_pred cccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCC
Q 005711 366 ARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKS 445 (681)
Q Consensus 366 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 445 (681)
..|.++++|++|++++|.++ .+| .+..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..|.++++
T Consensus 179 ~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 256 (440)
T 3zyj_A 179 GAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS 256 (440)
T ss_dssp TTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTT
T ss_pred chhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCC
Confidence 23445555555555555554 233 2445555555555555555555556666677777777777777666667777777
Q ss_pred CcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCc
Q 005711 446 LEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLS 481 (681)
Q Consensus 446 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 481 (681)
|++|+|++|++++..+..+..+++|+.|++++|.+.
T Consensus 257 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 257 LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 777777777777666666677777777777777765
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=2.6e-24 Score=238.90 Aligned_cols=261 Identities=26% Similarity=0.327 Sum_probs=136.8
Q ss_pred CCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEE
Q 005711 250 SLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLL 329 (681)
Q Consensus 250 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L 329 (681)
+++.|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.++ .+|. .+ ++|++|
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l---~~L~~L 106 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LP---PGLLEL 106 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CC---TTCCEE
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CC---CCCCEE
Confidence 4566666666655 4444433 45555555555554 2333 3445555555555544 2332 11 245555
Q ss_pred EccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeeccccccc
Q 005711 330 DLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLS 409 (681)
Q Consensus 330 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~ 409 (681)
++++|.+++ +|. .+++|+.|++++|++++ +|.. +++|++|++++|.++
T Consensus 107 ~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~------------------------ 154 (622)
T 3g06_A 107 SIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA------------------------ 154 (622)
T ss_dssp EECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS------------------------
T ss_pred ECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCC------------------------
Confidence 555555442 222 23444445555444442 2221 244444444444443
Q ss_pred ccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccc
Q 005711 410 GEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLF 489 (681)
Q Consensus 410 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 489 (681)
+. |. .+++|+.|++++|.+++ +| ..+++|+.|++++|.+++ +|. ..++|+.|++++|.++ .+|..
T Consensus 155 ~l-~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~~-- 219 (622)
T 3g06_A 155 SL-PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPAL-- 219 (622)
T ss_dssp CC-CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCCC--
T ss_pred Cc-CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCCC--
Confidence 21 11 22455566666665553 33 334556666666666653 222 1355666666666665 23321
Q ss_pred cCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCCcCCCCCCCEEECCCCcCc
Q 005711 490 SFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLT 569 (681)
Q Consensus 490 ~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~N~l~ 569 (681)
+++|+.|++++|+++ .+| ..+++|+.|+|++|+++ .+|. .+++|+.|+|++|+++
T Consensus 220 -~~~L~~L~Ls~N~L~------------------~lp---~~l~~L~~L~Ls~N~L~-~lp~--~~~~L~~L~Ls~N~L~ 274 (622)
T 3g06_A 220 -PSGLKELIVSGNRLT------------------SLP---VLPSELKELMVSGNRLT-SLPM--LPSGLLSLSVYRNQLT 274 (622)
T ss_dssp -CTTCCEEECCSSCCS------------------CCC---CCCTTCCEEECCSSCCS-CCCC--CCTTCCEEECCSSCCC
T ss_pred -CCCCCEEEccCCccC------------------cCC---CCCCcCcEEECCCCCCC-cCCc--ccccCcEEeCCCCCCC
Confidence 244555555444443 233 23466777777777777 3444 4567777777777777
Q ss_pred ccCCccccCCCCCCeEecccCcceeeCC
Q 005711 570 GQIPGNISSLQELTLLNLSYNSFSGFVP 597 (681)
Q Consensus 570 ~~~p~~l~~l~~L~~L~ls~N~l~~~~p 597 (681)
.+|..+..+++|+.|++++|++++.+|
T Consensus 275 -~lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 275 -RLPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp -SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred -cCCHHHhhccccCEEEecCCCCCCcCH
Confidence 667777777777777777777776654
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=3.3e-28 Score=273.38 Aligned_cols=232 Identities=16% Similarity=0.169 Sum_probs=152.5
Q ss_pred ccccCCCCCCEE-eccCCccccccccccCCCCCCCEEEccCCcCccccCc-ccccCCCcceeeccccccccc-CccccCC
Q 005711 342 LKITELKSLQAL-FLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPL-NIVGCFQLLALIVNNNNLSGE-IQPELDA 418 (681)
Q Consensus 342 ~~l~~l~~L~~L-~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~~~~L~~L~l~~n~l~~~-~~~~~~~ 418 (681)
..+.++++|+.| .+.+... +.++..+..+++|++|++++|.+++.... .+..+++|+.|++.+| +... ++.....
T Consensus 259 ~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~ 336 (594)
T 2p1m_B 259 VALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLAST 336 (594)
T ss_dssp HHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHH
T ss_pred HHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHh
Confidence 345666666666 3333221 23344344566777777777765543222 2345677777777766 3221 2222234
Q ss_pred CCCccEEEcc---------cCcceeccccccC-CCCCCcEEECCCCcCCCcchhhhh-cCCCCCEEEcc--C----CcCc
Q 005711 419 LDSLKILDIS---------NNQISGEIPLTLA-GLKSLEIVDFSSNNLSGSLNDAIT-KWTNLKYFSIA--R----NKLS 481 (681)
Q Consensus 419 l~~L~~L~Ls---------~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~--~----n~l~ 481 (681)
+++|+.|++. .+.+++.....+. ++++|++|+++.|.+++.....+. .+++|+.|+++ + +.++
T Consensus 337 ~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~ 416 (594)
T 2p1m_B 337 CKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT 416 (594)
T ss_dssp CTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT
T ss_pred CCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc
Confidence 7788888883 3455544333333 489999999999999876666664 69999999999 4 5555
Q ss_pred c-----cCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCccccc-ccccceeecCCCcCcccCCC-c-C
Q 005711 482 G-----NLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVPG-L-Y 553 (681)
Q Consensus 482 ~-----~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~-l~~L~~L~Ls~N~l~~~ip~-~-~ 553 (681)
+ .++..+..+++|+.|++++ .+++ ..+..+.. +++|++|+|++|.+++..+. + .
T Consensus 417 ~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~-----------------~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~ 478 (594)
T 2p1m_B 417 LEPLDIGFGAIVEHCKDLRRLSLSG-LLTD-----------------KVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLS 478 (594)
T ss_dssp CCCTHHHHHHHHHHCTTCCEEECCS-SCCH-----------------HHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHH
T ss_pred CCchhhHHHHHHhhCCCccEEeecC-cccH-----------------HHHHHHHHhchhccEeeccCCCCcHHHHHHHHh
Confidence 2 2233366788899988865 3332 33344444 78999999999999765444 3 6
Q ss_pred CCCCCCEEECCCCcCcccCCc-cccCCCCCCeEecccCcce
Q 005711 554 RLRSLRALDLSHNSLTGQIPG-NISSLQELTLLNLSYNSFS 593 (681)
Q Consensus 554 ~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~ls~N~l~ 593 (681)
.+++|+.|++++|.+++..+. ....+++|+.|++++|+++
T Consensus 479 ~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 479 GCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred cCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 689999999999999765544 3456899999999999984
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1.7e-24 Score=218.16 Aligned_cols=227 Identities=23% Similarity=0.246 Sum_probs=131.5
Q ss_pred EEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccc
Q 005711 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNL 408 (681)
Q Consensus 329 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l 408 (681)
++..+..++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 344444444 3444332 3566666666666655555566666666666666666544443444444444444444444
Q ss_pred cccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCccc
Q 005711 409 SGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWL 488 (681)
Q Consensus 409 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~ 488 (681)
.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++. .+|..+
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------------~l~~~~ 145 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-----------------------KLPEYF 145 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-----------------------CCCGGG
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCcccee-----------------------cCchhh
Confidence 333333344444444444444444443333444444444444444444431 134444
Q ss_pred ccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccc----eeecCCCcCcccCCCcCCCCCCCEEECC
Q 005711 489 FSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLE----YLNLSFNFLDGQVPGLYRLRSLRALDLS 564 (681)
Q Consensus 489 ~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~----~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls 564 (681)
..+++|+.|++++|++.+ ..+..+..+++|+ +|++++|++++..+......+|+.|+++
T Consensus 146 ~~l~~L~~L~Ls~N~l~~-----------------~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~ 208 (276)
T 2z62_A 146 SNLTNLEHLDLSSNKIQS-----------------IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALD 208 (276)
T ss_dssp GGCTTCCEEECCSSCCCE-----------------ECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECC
T ss_pred ccCCCCCEEECCCCCCCc-----------------CCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECC
Confidence 444444444444443332 2233444455555 7889999988766665556689999999
Q ss_pred CCcCcccCCccccCCCCCCeEecccCcceeeCCC
Q 005711 565 HNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPW 598 (681)
Q Consensus 565 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 598 (681)
+|++++..+..+..+++|+.|++++|++.|.+|.
T Consensus 209 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 209 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp SSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred CCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 9999977777788899999999999999998874
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=5.7e-26 Score=247.21 Aligned_cols=233 Identities=22% Similarity=0.173 Sum_probs=127.5
Q ss_pred CCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEE
Q 005711 107 FLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLD 186 (681)
Q Consensus 107 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~ 186 (681)
+|++|+|++|.+++..|..|+.+++|++|+|++|.+++..| |..+++|++|++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L------------------------- 87 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL------------------------- 87 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEEC-------------------------
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEe-------------------------
Confidence 56666666666665555556666666666666666554433 444444444444
Q ss_pred ccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCC
Q 005711 187 FSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIP 266 (681)
Q Consensus 187 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p 266 (681)
++|.+++. | ..++|++|++++|.+++..+..+++|+.|++++|.+++..|..++.+++|++|++++|.+++..|
T Consensus 88 -s~N~l~~l-~----~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (487)
T 3oja_A 88 -NNNYVQEL-L----VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (487)
T ss_dssp -CSSEEEEE-E----ECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG
T ss_pred -cCCcCCCC-C----CCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh
Confidence 44444422 1 12567777777777766666556666666666676666666666667777777777777776666
Q ss_pred hhhc-ccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCccccc
Q 005711 267 TCIA-SLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKIT 345 (681)
Q Consensus 267 ~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~ 345 (681)
..+. .+++|++|++++|.+++..+ ...+++|+.|++++|.+++. |..+..+. +|+.|++++|.+++ +|..+.
T Consensus 162 ~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~---~L~~L~Ls~N~l~~-lp~~l~ 234 (487)
T 3oja_A 162 AELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAA---GVTWISLRNNKLVL-IEKALR 234 (487)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGT---TCSEEECTTSCCCE-ECTTCC
T ss_pred HHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCC-CHhHcCCC---CccEEEecCCcCcc-cchhhc
Confidence 6654 56667777777766664421 22355555555555555532 22233332 45555555555442 344444
Q ss_pred CCCCCCEEeccCCccc-cccccccCCCCCCCEEEc
Q 005711 346 ELKSLQALFLSNNLLI-GEIPARIGNLTYLQVIDL 379 (681)
Q Consensus 346 ~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L 379 (681)
.+++|+.|++++|.+. +.+|..+..++.|+.+++
T Consensus 235 ~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp CCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 4444444444444443 333333444444433333
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=2.8e-24 Score=215.62 Aligned_cols=219 Identities=24% Similarity=0.242 Sum_probs=166.3
Q ss_pred CCCCCCCceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcC
Q 005711 67 SNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVV 146 (681)
Q Consensus 67 ~~cc~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 146 (681)
.++|.|.|+.|.. .+.++.++++++.++. +|..+. +++++|++++|.+++..+..|+++++|++|++++|.++...
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEe-CCCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 4789999999863 3456689999999884 665554 68999999999999887788999999999999999999666
Q ss_pred CccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCc
Q 005711 147 PDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQS 226 (681)
Q Consensus 147 p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 226 (681)
+..|.++++|++|++++|+ +.+..+..+..+ ++|++|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus 78 ~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~------ 149 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNK-LQALPIGVFDQL-VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP------ 149 (270)
T ss_dssp TTTTSSCTTCCEEECCSSC-CCCCCTTTTTTC-SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC------
T ss_pred hhhhcCCCCCCEEECCCCc-CCcCCHhHcccc-cCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC------
Confidence 6677889999999999994 445455566777 78899999988888777777888888888888887776433
Q ss_pred ccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccC
Q 005711 227 LLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSF 306 (681)
Q Consensus 227 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 306 (681)
+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus 150 ---------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 150 ---------------KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp ---------------TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred ---------------HhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecC
Confidence 33455666677777777776665555666677777777777777655555566677777777777
Q ss_pred CCccCC
Q 005711 307 NDLSGP 312 (681)
Q Consensus 307 n~l~~~ 312 (681)
|.+...
T Consensus 215 N~~~c~ 220 (270)
T 2o6q_A 215 NPWDCT 220 (270)
T ss_dssp SCBCCS
T ss_pred CCeeCC
Confidence 776543
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.7e-23 Score=210.84 Aligned_cols=207 Identities=24% Similarity=0.244 Sum_probs=166.1
Q ss_pred CccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecc
Q 005711 325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVN 404 (681)
Q Consensus 325 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~ 404 (681)
++++|++++|++++..+..+..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 68888888888887666678888899999999998887777788888999999999999888777888888999999999
Q ss_pred cccccccCccccCCCCCccEEEcccCcceec-cccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCC----EEEccCCc
Q 005711 405 NNNLSGEIQPELDALDSLKILDISNNQISGE-IPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLK----YFSIARNK 479 (681)
Q Consensus 405 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~----~L~L~~n~ 479 (681)
+|.+.+..+..+..+++|+.|++++|.+++. +|..+.++++|++|++++|++++..+..+..+++|+ +|++++|.
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 9998887777788999999999999999864 688899999999999999998877666666555555 44444444
Q ss_pred CcccCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCC
Q 005711 480 LSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSL 558 (681)
Q Consensus 480 l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L 558 (681)
++ .+|.......+|++|++++|++++..+. +..+++|
T Consensus 189 l~------------------------------------------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 226 (276)
T 2z62_A 189 MN------------------------------------------FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSL 226 (276)
T ss_dssp CC------------------------------------------EECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSC
T ss_pred cc------------------------------------------ccCccccCCCcccEEECCCCceeecCHhHhcccccc
Confidence 43 2233333445789999999999876666 6789999
Q ss_pred CEEECCCCcCcccCC
Q 005711 559 RALDLSHNSLTGQIP 573 (681)
Q Consensus 559 ~~L~Ls~N~l~~~~p 573 (681)
+.|++++|.+++..|
T Consensus 227 ~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 227 QKIWLHTNPWDCSCP 241 (276)
T ss_dssp CEEECCSSCBCCCTT
T ss_pred cEEEccCCcccccCC
Confidence 999999999987544
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=6.8e-24 Score=213.03 Aligned_cols=207 Identities=19% Similarity=0.150 Sum_probs=149.4
Q ss_pred CccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecc
Q 005711 325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVN 404 (681)
Q Consensus 325 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~ 404 (681)
+|+.|++++|.++. ++ .+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 42 ~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 42 SIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp TCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred ceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 55555665555542 22 345566666666666666542 245666666666666666665555555666666666666
Q ss_pred cccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccC
Q 005711 405 NNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNL 484 (681)
Q Consensus 405 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 484 (681)
+|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (272)
T 3rfs_A 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC
Confidence 66666666666777788888888888888766667778888888888888888777777788888888888888888777
Q ss_pred CcccccCCccceeecccCccccCCCCCcccccCCccccccCCccccccccc
Q 005711 485 PNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGL 535 (681)
Q Consensus 485 p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L 535 (681)
|..+..+++|+.|++++|.+.+..|....++++.|+++|.+|..++.+...
T Consensus 198 ~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 198 DGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred HHHHhCCcCCCEEEccCCCccccCcHHHHHHHHHHhCCCcccCcccccCCC
Confidence 777788888888888888888888888888888888888888888776543
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=7.3e-23 Score=205.28 Aligned_cols=184 Identities=23% Similarity=0.271 Sum_probs=132.6
Q ss_pred CcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEcc
Q 005711 397 QLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIA 476 (681)
Q Consensus 397 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 476 (681)
+++.|++++|.+.+..+..+..+++|++|++++|.++...+..|.++++|++|++++|++++..+..+..+++|++|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 34444444444444444455566666666666666665444555666777777777777765555566667777777777
Q ss_pred CCcCcccCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCC
Q 005711 477 RNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRL 555 (681)
Q Consensus 477 ~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l 555 (681)
+|.+++..+..+..+++|+.|++++|++.+ ..+..+..+++|++|+|++|++++..+. +..+
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-----------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 180 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQS-----------------LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL 180 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----------------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCCcCCc-----------------cCHhHccCCcccceeEecCCcCcEeChhHhccC
Confidence 777766555566666777776666665542 2234467889999999999999977766 8889
Q ss_pred CCCCEEECCCCcCcccCCccccCCCCCCeEecccCcceeeCC
Q 005711 556 RSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVP 597 (681)
Q Consensus 556 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 597 (681)
++|+.|++++|++++..+..+..+++|+.|++++|++.|.++
T Consensus 181 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 181 TELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred CCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 999999999999998777789999999999999999998876
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=2e-22 Score=203.84 Aligned_cols=206 Identities=22% Similarity=0.196 Sum_probs=134.6
Q ss_pred ccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCcc
Q 005711 344 ITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLK 423 (681)
Q Consensus 344 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 423 (681)
+..++++++++++++.++ .+|..+. ++++.|++++|.+++..+ ..+..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~------------------------~~~~~l~~L~ 58 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSL------------------------ATLMPYTRLT 58 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEG------------------------GGGTTCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCH------------------------HHhhcCCCCC
Confidence 344555666666665555 3333332 455555555555554444 4455555566
Q ss_pred EEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCc
Q 005711 424 ILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNK 503 (681)
Q Consensus 424 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~ 503 (681)
.|++++|.+++..+. +.+++|++|++++|+++ .+|..+..+++|++|++++|++++..|..+..+++|+.|++++|+
T Consensus 59 ~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~ 135 (290)
T 1p9a_G 59 QLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135 (290)
T ss_dssp EEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC
T ss_pred EEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC
Confidence 666666665543221 45666666666666665 445555666666666666666665555556666666666666655
Q ss_pred cccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCC
Q 005711 504 FMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQEL 582 (681)
Q Consensus 504 ~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 582 (681)
+++ ..+..+..+++|+.|+|++|++++..+. +..+++|+.|++++|+++ .+|..+.....|
T Consensus 136 l~~-----------------~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L 197 (290)
T 1p9a_G 136 LKT-----------------LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197 (290)
T ss_dssp CCC-----------------CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCC
T ss_pred CCc-----------------cChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccC
Confidence 542 2334466788999999999999865555 677999999999999998 778888888899
Q ss_pred CeEecccCcceeeCC
Q 005711 583 TLLNLSYNSFSGFVP 597 (681)
Q Consensus 583 ~~L~ls~N~l~~~~p 597 (681)
+.+++++|++.|.+.
T Consensus 198 ~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 198 PFAFLHGNPWLCNCE 212 (290)
T ss_dssp SEEECCSCCBCCSGG
T ss_pred CeEEeCCCCccCcCc
Confidence 999999999988663
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=1.9e-24 Score=224.39 Aligned_cols=214 Identities=19% Similarity=0.204 Sum_probs=131.5
Q ss_pred CCCCCCCceeecCCCCcEEEEEcCCCCCcccccccccCC--CCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCC
Q 005711 67 SNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKL--SFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVG 144 (681)
Q Consensus 67 ~~cc~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 144 (681)
..|..|.++.|+ +..++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +.++++|++|++++|.+++
T Consensus 34 ~vc~~W~~~~~~--~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~ 107 (336)
T 2ast_B 34 GVCKRWYRLASD--ESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEV 107 (336)
T ss_dssp SSCHHHHHHHTC--STTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECH
T ss_pred HHHHHHHHHhcC--chhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCH
Confidence 456679988875 345677888887765 3345555 6788888888888776555 4567888888888887765
Q ss_pred c-CCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCC-cCcc-ccCccccCCCCCCEEEccCc-cCcccc
Q 005711 145 V-VPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFN-SFCG-EIPESLYYLKSLKHLDLEKN-NLTGNV 220 (681)
Q Consensus 145 ~-~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n-~l~~-~~p~~l~~l~~L~~L~L~~n-~l~~~~ 220 (681)
. +|..+..+++|++|++++| .+.+..+..++.+ ++|++|++++| .+++ .++..+.++++|++|++++| .+++.
T Consensus 108 ~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~-~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~- 184 (336)
T 2ast_B 108 STLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK- 184 (336)
T ss_dssp HHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHTTC-TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH-
T ss_pred HHHHHHHhhCCCCCEEeCcCc-ccCHHHHHHHhcC-CCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH-
Confidence 5 6667777777777777777 3444555556665 66777777766 4554 24555566666666666665 54421
Q ss_pred cCcCCcccEEECCCCCCccccchhhccCC-CCCEEEccCC--ccc-cCCChhhcccCcccEEecCCCc-cccccCccccC
Q 005711 221 HDFYQSLLVLNLGSNRFSGTLPCFAASAM-SLTVLKLDNN--SVV-GGIPTCIASLQALTHLNLSHNH-LNYEISPRLVF 295 (681)
Q Consensus 221 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~-~L~~L~L~~n--~l~-~~~p~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~ 295 (681)
.++..+..++ +|++|++++| .++ +.+|..+..+++|++|++++|. +++..+..+..
T Consensus 185 -------------------~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 245 (336)
T 2ast_B 185 -------------------HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ 245 (336)
T ss_dssp -------------------HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG
T ss_pred -------------------HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhC
Confidence 1344455555 5666666655 233 2334444555555555555555 44444445555
Q ss_pred CCCCcEEeccCCC
Q 005711 296 FEKLLLLDLSFND 308 (681)
Q Consensus 296 l~~L~~L~L~~n~ 308 (681)
+++|++|++++|.
T Consensus 246 l~~L~~L~l~~~~ 258 (336)
T 2ast_B 246 LNYLQHLSLSRCY 258 (336)
T ss_dssp CTTCCEEECTTCT
T ss_pred CCCCCEeeCCCCC
Confidence 5555555555553
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=1.1e-22 Score=208.49 Aligned_cols=203 Identities=24% Similarity=0.232 Sum_probs=102.8
Q ss_pred CCCCEEeccCCcccccccccc--CCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEE
Q 005711 348 KSLQALFLSNNLLIGEIPARI--GNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKIL 425 (681)
Q Consensus 348 ~~L~~L~L~~n~l~~~~~~~l--~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 425 (681)
++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+..-. ..+..+++|++|
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~--------------------~~~~~~~~L~~L 150 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAE--------------------LQQWLKPGLKVL 150 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHH--------------------HHTTBCSCCCEE
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHH--------------------HHhhhccCCCEE
Confidence 446666666666666555555 5566666666666666543331000 011233444444
Q ss_pred EcccCcceeccccccCCCCCCcEEECCCCcCCCc--ch--hhhhcCCCCCEEEccCCcCcccCCc----ccccCCcccee
Q 005711 426 DISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGS--LN--DAITKWTNLKYFSIARNKLSGNLPN----WLFSFQAIQMM 497 (681)
Q Consensus 426 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~~--~~~~~l~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L 497 (681)
++++|.+.+..+..++.+++|++|++++|++.+. ++ ..+..+++|++|++++|+++. ++. .+..+++|+.|
T Consensus 151 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L 229 (310)
T 4glp_A 151 SIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSL 229 (310)
T ss_dssp EEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSE
T ss_pred EeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEE
Confidence 4444444444444444444444444444444321 11 112344444555555544431 111 12344445544
Q ss_pred ecccCccccCCCCCcccccCCccccccCCcccccc---cccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCC
Q 005711 498 DFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQL---QGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIP 573 (681)
Q Consensus 498 ~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l---~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p 573 (681)
|+++|++.+ .+|..++.+ ++|++|+|++|+++ .+|. +. ++|+.||+++|++++. |
T Consensus 230 ~Ls~N~l~~-----------------~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~ 288 (310)
T 4glp_A 230 DLSHNSLRA-----------------TVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-P 288 (310)
T ss_dssp ECTTSCCCC-----------------CCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-C
T ss_pred ECCCCCCCc-----------------cchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-c
Confidence 444444432 223333333 46777777777777 4555 43 6777777777777753 3
Q ss_pred ccccCCCCCCeEecccCcce
Q 005711 574 GNISSLQELTLLNLSYNSFS 593 (681)
Q Consensus 574 ~~l~~l~~L~~L~ls~N~l~ 593 (681)
. +..+++|+.|++++|+++
T Consensus 289 ~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 289 Q-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp C-TTSCCCCSCEECSSTTTS
T ss_pred h-hhhCCCccEEECcCCCCC
Confidence 2 456677777777777765
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=3e-22 Score=201.00 Aligned_cols=208 Identities=23% Similarity=0.210 Sum_probs=113.1
Q ss_pred ccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCC
Q 005711 271 SLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSL 350 (681)
Q Consensus 271 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L 350 (681)
.+++|+.|++++|.++. ...+..+++|++|++++|.+++. ..+..+. +|++|++++|.+++..+..+..+++|
T Consensus 39 ~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~---~L~~L~L~~n~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDI--SALKELT---NLTYLILTGNQLQSLPNGVFDKLTNL 111 (272)
T ss_dssp HHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCCC--GGGTTCT---TCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred cccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCCc--hhhcCCC---CCCEEECCCCccCccChhHhcCCcCC
Confidence 34444455554444431 12244455555555555554431 1222222 55555555555555444445555666
Q ss_pred CEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccC
Q 005711 351 QALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNN 430 (681)
Q Consensus 351 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 430 (681)
++|++++|++++..+..+.++++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence 66666666665555555555666666666666655444444455555555555555555544444555666666666666
Q ss_pred cceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCC
Q 005711 431 QISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQ 492 (681)
Q Consensus 431 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 492 (681)
.+++..+..+..+++|++|++++|.+.+. +++|+.+++..|.++|.+|.+++.+.
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 192 QLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred cCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccC
Confidence 66655555566666666666666665533 33556666666666666666555443
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=4.7e-24 Score=223.60 Aligned_cols=258 Identities=19% Similarity=0.200 Sum_probs=133.2
Q ss_pred EeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCc----ccccCCC-CCCEEeccCCccccccccccCCC-----
Q 005711 302 LDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIP----LKITELK-SLQALFLSNNLLIGEIPARIGNL----- 371 (681)
Q Consensus 302 L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p----~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l----- 371 (681)
++++.|.++|.+|..+.... +|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~---~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~ 79 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPH---GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCT---TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred cccccccchHHHHHHHhCCC---CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC
Confidence 34555555554444333222 35555555555554433 3444444 55555555555554444333332
Q ss_pred CCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCC-CCccEEEcccCcceeccccc----cCC-CCC
Q 005711 372 TYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDAL-DSLKILDISNNQISGEIPLT----LAG-LKS 445 (681)
Q Consensus 372 ~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~p~~----~~~-l~~ 445 (681)
++|++|++++|.+++..+..+.. .+..+ ++|+.|++++|.+++..+.. +.. .++
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~--------------------~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 139 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVK--------------------TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHH--------------------HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTT
T ss_pred CCccEEECcCCcCChHHHHHHHH--------------------HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCc
Confidence 45555555555554433332221 12222 55666666666665444332 222 246
Q ss_pred CcEEECCCCcCCCc----chhhhhcCC-CCCEEEccCCcCcccCCcccc----cC-CccceeecccCccccCCCCCcccc
Q 005711 446 LEIVDFSSNNLSGS----LNDAITKWT-NLKYFSIARNKLSGNLPNWLF----SF-QAIQMMDFSTNKFMGFIPDAVGMD 515 (681)
Q Consensus 446 L~~L~L~~n~l~~~----~~~~~~~l~-~L~~L~L~~n~l~~~~p~~~~----~l-~~L~~L~ls~n~~~~~~p~~~~L~ 515 (681)
|++|++++|.+++. ++..+..++ +|++|++++|++++..+..+. .. ++|+.||+++|.+.+.-.
T Consensus 140 L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~------ 213 (362)
T 3goz_A 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSY------ 213 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH------
T ss_pred eeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHH------
Confidence 66666666666532 233334444 666666666666654443332 22 356666666555542100
Q ss_pred cCCccccccCCccccc-ccccceeecCCCcCcccCC----C-cCCCCCCCEEECCCCcCccc-------CCccccCCCCC
Q 005711 516 LSDNLLHGTIPKGLFQ-LQGLEYLNLSFNFLDGQVP----G-LYRLRSLRALDLSHNSLTGQ-------IPGNISSLQEL 582 (681)
Q Consensus 516 Ls~N~l~g~ip~~l~~-l~~L~~L~Ls~N~l~~~ip----~-~~~l~~L~~L~Ls~N~l~~~-------~p~~l~~l~~L 582 (681)
..++..+.. .++|++|+|++|.+++..+ . +..+++|+.|++++|.+.+. ++..+..+++|
T Consensus 214 -------~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L 286 (362)
T 3goz_A 214 -------AELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI 286 (362)
T ss_dssp -------HHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEE
T ss_pred -------HHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCce
Confidence 023444444 3467777777777765433 2 34567777777777774433 23345666777
Q ss_pred CeEecccCcceee
Q 005711 583 TLLNLSYNSFSGF 595 (681)
Q Consensus 583 ~~L~ls~N~l~~~ 595 (681)
+.||+++|++.+.
T Consensus 287 ~~LdL~~N~l~~~ 299 (362)
T 3goz_A 287 ILVDKNGKEIHPS 299 (362)
T ss_dssp EEECTTSCBCCGG
T ss_pred EEEecCCCcCCCc
Confidence 7777777777654
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=1.4e-21 Score=197.78 Aligned_cols=203 Identities=24% Similarity=0.248 Sum_probs=157.7
Q ss_pred ccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCC
Q 005711 293 LVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLT 372 (681)
Q Consensus 293 l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 372 (681)
+..++++++++++++.++ .+|..+. +.++.|++++|.+++..+..+..+++|++|++++|.+++..+ ...++
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~-----~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~ 77 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP-----KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLP 77 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC-----TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCT
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC-----CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCC
Confidence 445666666777766665 4554433 267788888888877667777788888888888888775433 26778
Q ss_pred CCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECC
Q 005711 373 YLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFS 452 (681)
Q Consensus 373 ~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 452 (681)
+|++|++++|.++ .+|..+..+++|+.|++++|++++..+..|..+++|+.|++++|++++..+..|..+++|+.|+++
T Consensus 78 ~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 156 (290)
T 1p9a_G 78 VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156 (290)
T ss_dssp TCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred cCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECC
Confidence 8888888888877 567777778888888888888887777778888889999999998887777778888899999999
Q ss_pred CCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccc
Q 005711 453 SNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFM 505 (681)
Q Consensus 453 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~ 505 (681)
+|++++..+..+..+++|++|++++|+++ .+|..+....+|+.+++++|.+.
T Consensus 157 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 157 NNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 99988666667788889999999999887 67888888888888888888765
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=4.2e-24 Score=226.23 Aligned_cols=190 Identities=21% Similarity=0.247 Sum_probs=114.3
Q ss_pred cCCCcceeecccccccc----cCccccCCCCCccEEEcccCcceecccccc----CCC---------CCCcEEECCCCcC
Q 005711 394 GCFQLLALIVNNNNLSG----EIQPELDALDSLKILDISNNQISGEIPLTL----AGL---------KSLEIVDFSSNNL 456 (681)
Q Consensus 394 ~~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~----~~l---------~~L~~L~L~~n~l 456 (681)
.+++|++|++++|.+.+ .++..+..+++|+.|++++|.+++..+..+ ..+ ++|++|++++|++
T Consensus 92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l 171 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171 (386)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence 33444444444444443 233344555566666666666543322222 222 6677777777776
Q ss_pred C-Ccch---hhhhcCCCCCEEEccCCcCcc-----cCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCc
Q 005711 457 S-GSLN---DAITKWTNLKYFSIARNKLSG-----NLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPK 527 (681)
Q Consensus 457 ~-~~~~---~~~~~l~~L~~L~L~~n~l~~-----~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~ 527 (681)
+ +.++ ..+..+++|++|++++|.+.. ..|..+..+++|+.|++++|.++..- .+.+|.
T Consensus 172 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g-------------~~~l~~ 238 (386)
T 2ca6_A 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG-------------SSALAI 238 (386)
T ss_dssp TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH-------------HHHHHH
T ss_pred CcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH-------------HHHHHH
Confidence 5 3333 345566677777777776652 22335556666666666665543100 025566
Q ss_pred ccccccccceeecCCCcCccc----CCC-c--CCCCCCCEEECCCCcCcc----cCCccc-cCCCCCCeEecccCcceee
Q 005711 528 GLFQLQGLEYLNLSFNFLDGQ----VPG-L--YRLRSLRALDLSHNSLTG----QIPGNI-SSLQELTLLNLSYNSFSGF 595 (681)
Q Consensus 528 ~l~~l~~L~~L~Ls~N~l~~~----ip~-~--~~l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~ls~N~l~~~ 595 (681)
.+..+++|++|+|++|.+++. +|. + +.+++|+.|+|++|.+++ .+|..+ .++++|++|++++|++++.
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 777778888888888887764 344 4 347888888888888887 477666 5578888888888888765
Q ss_pred C
Q 005711 596 V 596 (681)
Q Consensus 596 ~ 596 (681)
.
T Consensus 319 ~ 319 (386)
T 2ca6_A 319 D 319 (386)
T ss_dssp S
T ss_pred h
Confidence 4
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=6.5e-23 Score=212.84 Aligned_cols=228 Identities=17% Similarity=0.207 Sum_probs=112.6
Q ss_pred CccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccc-cccccCCCCCCCEEEccCCcCccccCcccccCCCcceeec
Q 005711 325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGE-IPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIV 403 (681)
Q Consensus 325 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l 403 (681)
.++.+++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+.
T Consensus 71 ~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~---------- 139 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA---------- 139 (336)
T ss_dssp TCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT----------
T ss_pred cceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHh----------
Confidence 455555555555544433 33455555555555555443 444555555555555555555544444443
Q ss_pred ccccccccCccccCCCCCccEEEcccC-cceec-cccccCCCCCCcEEECCCC-cCCCc-chhhhhcCC-CCCEEEccCC
Q 005711 404 NNNNLSGEIQPELDALDSLKILDISNN-QISGE-IPLTLAGLKSLEIVDFSSN-NLSGS-LNDAITKWT-NLKYFSIARN 478 (681)
Q Consensus 404 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~-~p~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~L~~n 478 (681)
.+++|+.|++++| .+++. ++..+.++++|++|++++| .+++. ++..+..++ +|++|++++|
T Consensus 140 --------------~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 140 --------------KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp --------------TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred --------------cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 3444444444444 33331 3333444555555555555 44432 344444555 5555555555
Q ss_pred --cCc-ccCCcccccCCccceeecccCc-cccCCCCCcccccCCccccccCCcccccccccceeecCCCc-CcccC-CCc
Q 005711 479 --KLS-GNLPNWLFSFQAIQMMDFSTNK-FMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNF-LDGQV-PGL 552 (681)
Q Consensus 479 --~l~-~~~p~~~~~l~~L~~L~ls~n~-~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~-l~~~i-p~~ 552 (681)
.++ +.+|..+..+++|+.|++++|. ++ +..+..+.++++|++|++++|. +.... ..+
T Consensus 206 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~-----------------~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l 268 (336)
T 2ast_B 206 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK-----------------NDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL 268 (336)
T ss_dssp GGGSCHHHHHHHHHHCTTCSEEECTTCTTCC-----------------GGGGGGGGGCTTCCEEECTTCTTCCGGGGGGG
T ss_pred cccCCHHHHHHHHhhCCCCCEEeCCCCCcCC-----------------HHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHH
Confidence 233 2334444445555555544443 22 1334445555666666666663 22111 124
Q ss_pred CCCCCCCEEECCCCcCcccCCccccCC-CCCCeEecccCcceeeCCC
Q 005711 553 YRLRSLRALDLSHNSLTGQIPGNISSL-QELTLLNLSYNSFSGFVPW 598 (681)
Q Consensus 553 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~~~~p~ 598 (681)
.++++|+.|++++| ++. +.+..+ ..+..|++++|++++..|.
T Consensus 269 ~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 269 GEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp GGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred hcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCC
Confidence 55666666666666 221 123333 2355566677777666553
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=6.3e-23 Score=215.00 Aligned_cols=258 Identities=21% Similarity=0.198 Sum_probs=139.3
Q ss_pred EECCCCCCccccchhhccCCCCCEEEccCCccccCCC----hhhcccC-cccEEecCCCccccccCccccCC-----CCC
Q 005711 230 LNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIP----TCIASLQ-ALTHLNLSHNHLNYEISPRLVFF-----EKL 299 (681)
Q Consensus 230 L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p----~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l-----~~L 299 (681)
.+++.|.++|.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4566677777777766666667777777777776555 5566666 67777777777766555555543 677
Q ss_pred cEEeccCCCccCCCChhhhhc-ccC-CCccEEEccCCCCcCCCcccc----cC-CCCCCEEeccCCccccccc----ccc
Q 005711 300 LLLDLSFNDLSGPLPSKIAQT-TEK-AGLVLLDLSHNRFSGEIPLKI----TE-LKSLQALFLSNNLLIGEIP----ARI 368 (681)
Q Consensus 300 ~~L~L~~n~l~~~~p~~~~~~-~~~-~~L~~L~Ls~n~l~~~~p~~l----~~-l~~L~~L~L~~n~l~~~~~----~~l 368 (681)
++|++++|.+++..+..+... ... ++|+.|++++|.+++..+..+ .. .++|++|++++|.+++..+ ..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 777777777766555544442 111 367777777777665544332 22 2466666666666654322 223
Q ss_pred CCCC-CCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCC-CCccEEEcccCcceec----cccccCC
Q 005711 369 GNLT-YLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDAL-DSLKILDISNNQISGE----IPLTLAG 442 (681)
Q Consensus 369 ~~l~-~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~----~p~~~~~ 442 (681)
...+ +|++|++++|.+++..+..+... +..+ ++|+.|++++|.+++. ++..+..
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~--------------------l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKF--------------------LASIPASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHH--------------------HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHH--------------------HHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 3333 66666666666655444332211 1122 2444555555544431 2222322
Q ss_pred -CCCCcEEECCCCcCCCcch----hhhhcCCCCCEEEccCCcCccc-------CCcccccCCccceeecccCccccC
Q 005711 443 -LKSLEIVDFSSNNLSGSLN----DAITKWTNLKYFSIARNKLSGN-------LPNWLFSFQAIQMMDFSTNKFMGF 507 (681)
Q Consensus 443 -l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~-------~p~~~~~l~~L~~L~ls~n~~~~~ 507 (681)
.++|++|++++|.+++..+ ..+..+++|++|++++|.+.+. ++..+..+++|+.||+++|++.+.
T Consensus 223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 2355555555555544322 2223445555555555553221 122334455566666666655443
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=2.4e-21 Score=192.00 Aligned_cols=192 Identities=24% Similarity=0.269 Sum_probs=146.2
Q ss_pred CCCCCCceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCC
Q 005711 68 NCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVP 147 (681)
Q Consensus 68 ~cc~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 147 (681)
+|+.|.|..|.. ..++++++++.+. .+|..+. +.+++|+|++|.+++..+..|+++++|++|+|++|.+++..|
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcCC---CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 688999999952 2346889998887 4565555 689999999999999888899999999999999999998888
Q ss_pred ccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcc
Q 005711 148 DAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSL 227 (681)
Q Consensus 148 ~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L 227 (681)
..|.++++|++|++++| .+.+..+..+..+ ++|++|++++|.+++..+..+..+++|++|++++|.+++..+
T Consensus 77 ~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------ 148 (251)
T 3m19_A 77 GVFDDLTELGTLGLANN-QLASLPLGVFDHL-TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA------ 148 (251)
T ss_dssp TTTTTCTTCCEEECTTS-CCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT------
T ss_pred hHhccCCcCCEEECCCC-cccccChhHhccc-CCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH------
Confidence 88999999999999999 4555556667777 788888888888886666667888888888888877765433
Q ss_pred cEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccc
Q 005711 228 LVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYE 288 (681)
Q Consensus 228 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 288 (681)
..+..+++|++|++++|++++..+..+..+++|++|++++|.+...
T Consensus 149 ---------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 149 ---------------GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp ---------------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ---------------HHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 3455556666666666666655555566666666666666666543
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=2.8e-22 Score=205.41 Aligned_cols=201 Identities=19% Similarity=0.193 Sum_probs=141.7
Q ss_pred CccEEEccCCCCcCCCcccc--cCCCCCCEEeccCCccccccc----cccCCCCCCCEEEccCCcCccccCcccccCCCc
Q 005711 325 GLVLLDLSHNRFSGEIPLKI--TELKSLQALFLSNNLLIGEIP----ARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQL 398 (681)
Q Consensus 325 ~L~~L~Ls~n~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L 398 (681)
+|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+.
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-------- 163 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCE-------- 163 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTT--------
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHH--------
Confidence 68888888888888888777 778888888888888876544 2334566777777777766544443
Q ss_pred ceeecccccccccCccccCCCCCccEEEcccCcceec--c--ccccCCCCCCcEEECCCCcCCCc--chh-hhhcCCCCC
Q 005711 399 LALIVNNNNLSGEIQPELDALDSLKILDISNNQISGE--I--PLTLAGLKSLEIVDFSSNNLSGS--LND-AITKWTNLK 471 (681)
Q Consensus 399 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~--p~~~~~l~~L~~L~L~~n~l~~~--~~~-~~~~l~~L~ 471 (681)
.+..+++|++|++++|++.+. + +..+..+++|++|++++|+++.. .+. .+..+++|+
T Consensus 164 ----------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~ 227 (310)
T 4glp_A 164 ----------------QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPH 227 (310)
T ss_dssp ----------------SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCS
T ss_pred ----------------HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCC
Confidence 344556666666666665432 1 22335677788888888887622 112 246778888
Q ss_pred EEEccCCcCcccCCcccccC---CccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCccc
Q 005711 472 YFSIARNKLSGNLPNWLFSF---QAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQ 548 (681)
Q Consensus 472 ~L~L~~n~l~~~~p~~~~~l---~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ 548 (681)
+|++++|++.+..|..+..+ ++|+.|++++|+++ .+|..+. ++|++|+|++|++++.
T Consensus 228 ~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~------------------~lp~~~~--~~L~~L~Ls~N~l~~~ 287 (310)
T 4glp_A 228 SLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE------------------QVPKGLP--AKLRVLDLSSNRLNRA 287 (310)
T ss_dssp SEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC------------------SCCSCCC--SCCSCEECCSCCCCSC
T ss_pred EEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC------------------chhhhhc--CCCCEEECCCCcCCCC
Confidence 88888888887767666665 46777666666654 4555554 6899999999999854
Q ss_pred CCCcCCCCCCCEEECCCCcCcc
Q 005711 549 VPGLYRLRSLRALDLSHNSLTG 570 (681)
Q Consensus 549 ip~~~~l~~L~~L~Ls~N~l~~ 570 (681)
|.+..+++|+.|++++|.++.
T Consensus 288 -~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 288 -PQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp -CCTTSCCCCSCEECSSTTTSC
T ss_pred -chhhhCCCccEEECcCCCCCC
Confidence 557778999999999998874
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=4.3e-23 Score=218.46 Aligned_cols=241 Identities=20% Similarity=0.244 Sum_probs=148.5
Q ss_pred ChhhcccCcccEEecCCCccccccC----ccccCCCCCcEEeccCC---CccCCCChhhhh----cccCCCccEEEccCC
Q 005711 266 PTCIASLQALTHLNLSHNHLNYEIS----PRLVFFEKLLLLDLSFN---DLSGPLPSKIAQ----TTEKAGLVLLDLSHN 334 (681)
Q Consensus 266 p~~l~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n---~l~~~~p~~~~~----~~~~~~L~~L~Ls~n 334 (681)
+..+..+++|++|++++|.++...+ ..+..+++|++|++++| .+++.+|..+.. +..+++|++|++++|
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 3344444445555555554443322 22334555555555553 333344443311 122336666666666
Q ss_pred CCcC----CCcccccCCCCCCEEeccCCccccccccccC----CC---------CCCCEEEccCCcCc-cccC---cccc
Q 005711 335 RFSG----EIPLKITELKSLQALFLSNNLLIGEIPARIG----NL---------TYLQVIDLSHNMLS-GSIP---LNIV 393 (681)
Q Consensus 335 ~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~----~l---------~~L~~L~Ls~n~l~-~~~p---~~~~ 393 (681)
.+++ .+|..+..+++|++|+|++|.+++..+..+. .+ ++|++|++++|.++ +.++ ..+.
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 184 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence 6665 3555566666777777777766543332222 22 67777777777765 3333 3455
Q ss_pred cCCCcceeecccccccc-----cCccccCCCCCccEEEcccCcce----eccccccCCCCCCcEEECCCCcCCCc----c
Q 005711 394 GCFQLLALIVNNNNLSG-----EIQPELDALDSLKILDISNNQIS----GEIPLTLAGLKSLEIVDFSSNNLSGS----L 460 (681)
Q Consensus 394 ~~~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~----~~~p~~~~~l~~L~~L~L~~n~l~~~----~ 460 (681)
.+++|+.|++++|.+.. ..+..+..+++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. +
T Consensus 185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 264 (386)
T 2ca6_A 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 264 (386)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence 66677777777777662 23336677788888888888885 55677778888888888888888755 4
Q ss_pred hhhhhc--CCCCCEEEccCCcCcc----cCCccc-ccCCccceeecccCcccc
Q 005711 461 NDAITK--WTNLKYFSIARNKLSG----NLPNWL-FSFQAIQMMDFSTNKFMG 506 (681)
Q Consensus 461 ~~~~~~--l~~L~~L~L~~n~l~~----~~p~~~-~~l~~L~~L~ls~n~~~~ 506 (681)
+..+.. +++|++|++++|.+++ .+|..+ .++++|+.|++++|++++
T Consensus 265 ~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 556633 7888888888888886 467666 557888888887777764
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=3.2e-21 Score=189.59 Aligned_cols=205 Identities=21% Similarity=0.181 Sum_probs=116.5
Q ss_pred CCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCc-CccccCcccccCCCcceeeccc-ccccccCcccc
Q 005711 339 EIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNM-LSGSIPLNIVGCFQLLALIVNN-NNLSGEIQPEL 416 (681)
Q Consensus 339 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~~~~L~~L~l~~-n~l~~~~~~~~ 416 (681)
.+|. +. ++|++|++++|++++..+..|.++++|++|++++|. +++..+..+.++++|++|++++ |.+++..+..|
T Consensus 25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 4555 32 367777777777776666667777777777777775 6544444555555555555554 55554444444
Q ss_pred CCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCC-cCcccCCcccccCCccc
Q 005711 417 DALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARN-KLSGNLPNWLFSFQAIQ 495 (681)
Q Consensus 417 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~ 495 (681)
..+++|+.|++++|.+++ +|. +..+++|+ .|++|++++| .+++..+..+..+++|+
T Consensus 102 ~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~---------------------~L~~L~l~~N~~l~~i~~~~~~~l~~L~ 158 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKM-FPD-LTKVYSTD---------------------IFFILEITDNPYMTSIPVNAFQGLCNET 158 (239)
T ss_dssp ECCTTCCEEEEEEECCCS-CCC-CTTCCBCC---------------------SEEEEEEESCTTCCEECTTTTTTTBSSE
T ss_pred CCCCCCCEEeCCCCCCcc-ccc-cccccccc---------------------cccEEECCCCcchhhcCcccccchhcce
Confidence 455555555555555543 333 44444444 0004555544 44433333344444444
Q ss_pred -eeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCc-CcccCCC-cCCC-CCCCEEECCCCcCccc
Q 005711 496 -MMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNF-LDGQVPG-LYRL-RSLRALDLSHNSLTGQ 571 (681)
Q Consensus 496 -~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~-l~~~ip~-~~~l-~~L~~L~Ls~N~l~~~ 571 (681)
.|++++|++. .+|......++|++|++++|+ +++..+. +..+ ++|+.|++++|++++
T Consensus 159 ~~L~l~~n~l~------------------~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~- 219 (239)
T 2xwt_C 159 LTLKLYNNGFT------------------SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA- 219 (239)
T ss_dssp EEEECCSCCCC------------------EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-
T ss_pred eEEEcCCCCCc------------------ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-
Confidence 4444444433 333333333677778888884 7755555 6667 788888888888874
Q ss_pred CCccccCCCCCCeEecccC
Q 005711 572 IPGNISSLQELTLLNLSYN 590 (681)
Q Consensus 572 ~p~~l~~l~~L~~L~ls~N 590 (681)
+|.. .++.|+.|+++++
T Consensus 220 l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 220 LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CCCT--TCTTCSEEECTTC
T ss_pred CChh--HhccCceeeccCc
Confidence 4433 5667777777765
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=6.8e-21 Score=187.27 Aligned_cols=196 Identities=18% Similarity=0.156 Sum_probs=143.2
Q ss_pred CccEEEccCCCCcCCCcccccCCCCCCEEeccCCc-cccccccccCCCCCCCEEEccC-CcCccccCcccccCCCcceee
Q 005711 325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNL-LIGEIPARIGNLTYLQVIDLSH-NMLSGSIPLNIVGCFQLLALI 402 (681)
Q Consensus 325 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~~~~L~~L~ 402 (681)
+++.|++++|++++..+..+..+++|++|++++|+ +++..+..|.++++|++|++++ |.+++..+..+.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 57777777777776555577777888888888886 6655555677778888888887 777766666777778888888
Q ss_pred cccccccccCccccCCCCCcc---EEEcccC-cceeccccccCCCCCCc-EEECCCCcCCCcchhhhhcCCCCCEEEccC
Q 005711 403 VNNNNLSGEIQPELDALDSLK---ILDISNN-QISGEIPLTLAGLKSLE-IVDFSSNNLSGSLNDAITKWTNLKYFSIAR 477 (681)
Q Consensus 403 l~~n~l~~~~~~~~~~l~~L~---~L~Ls~n-~l~~~~p~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 477 (681)
+++|.+++ +|. +..+++|+ .|++++| .+++..+..|.++++|+ +|++++|+++ .+|......++|++|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCC
Confidence 88887776 444 66777777 8888888 88876667788888888 8888888887 4444333337888888888
Q ss_pred Cc-CcccCCcccccC-CccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCC
Q 005711 478 NK-LSGNLPNWLFSF-QAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFN 543 (681)
Q Consensus 478 n~-l~~~~p~~~~~l-~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N 543 (681)
|+ +++..+..+..+ ++|+.|++++|+++ .+|.. .+++|+.|+++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~------------------~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVT------------------ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCC------------------CCCCT--TCTTCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccc------------------cCChh--HhccCceeeccCc
Confidence 84 776556667777 78888777777665 33433 4667777777765
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1.2e-20 Score=192.69 Aligned_cols=123 Identities=29% Similarity=0.438 Sum_probs=59.7
Q ss_pred CccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecc
Q 005711 325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVN 404 (681)
Q Consensus 325 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~ 404 (681)
+|+.|++++|.++. +| .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++
T Consensus 42 ~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~------------------ 99 (308)
T 1h6u_A 42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN------------------ 99 (308)
T ss_dssp TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC------------------
T ss_pred CcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC------------------
Confidence 45555555555442 22 34444455555555554443222 4444444444444444432
Q ss_pred cccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCc
Q 005711 405 NNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLS 481 (681)
Q Consensus 405 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 481 (681)
. ..+..+++|+.|++++|.+++. + .+..+++|++|++++|.+++..+ +..+++|++|++++|.++
T Consensus 100 ------~--~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 100 ------V--SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp ------C--GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred ------c--hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC
Confidence 1 1244455555555555555532 2 15555556666666555554322 455555555555555554
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=2e-20 Score=191.04 Aligned_cols=193 Identities=19% Similarity=0.325 Sum_probs=151.0
Q ss_pred CCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEE
Q 005711 346 ELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKIL 425 (681)
Q Consensus 346 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 425 (681)
.+++|++|++++|.+.. ++ .+..+++|++|++++|.++ +..+ +..+++|+.|
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~------------------------~~~~--~~~l~~L~~L 90 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT------------------------DLAP--LKNLTKITEL 90 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC------------------------CCGG--GTTCCSCCEE
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC------------------------CChh--HccCCCCCEE
Confidence 45566666666666553 22 3555556666666655554 3222 6678899999
Q ss_pred EcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccc
Q 005711 426 DISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFM 505 (681)
Q Consensus 426 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~ 505 (681)
++++|.+++. + .+..+++|++|++++|++++. + .+..+++|++|++++|.+++..+ +..+++|+.|++++|+++
T Consensus 91 ~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 91 ELSGNPLKNV-S-AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp ECCSCCCSCC-G-GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred EccCCcCCCc-h-hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC
Confidence 9999999863 3 688999999999999999864 3 38899999999999999986433 778888888888888765
Q ss_pred cCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCCcCCCCCCCEEECCCCcCcccCCccccCCCCCCeE
Q 005711 506 GFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLL 585 (681)
Q Consensus 506 ~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 585 (681)
.++. +..+++|+.|++++|++++. +.+..+++|+.|++++|++++..| +..+++|+.|
T Consensus 165 ------------------~~~~-l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L 222 (308)
T 1h6u_A 165 ------------------DLTP-LANLSKLTTLKADDNKISDI-SPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIV 222 (308)
T ss_dssp ------------------CCGG-GTTCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEE
T ss_pred ------------------CChh-hcCCCCCCEEECCCCccCcC-hhhcCCCCCCEEEccCCccCcccc--ccCCCCCCEE
Confidence 2333 77899999999999999854 458889999999999999997654 8899999999
Q ss_pred ecccCccee
Q 005711 586 NLSYNSFSG 594 (681)
Q Consensus 586 ~ls~N~l~~ 594 (681)
++++|++++
T Consensus 223 ~l~~N~i~~ 231 (308)
T 1h6u_A 223 TLTNQTITN 231 (308)
T ss_dssp EEEEEEEEC
T ss_pred EccCCeeec
Confidence 999999976
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=4.2e-20 Score=183.00 Aligned_cols=178 Identities=23% Similarity=0.203 Sum_probs=91.5
Q ss_pred CCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEE
Q 005711 298 KLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVI 377 (681)
Q Consensus 298 ~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 377 (681)
..+.++++++.++ .+|..+.. .++.|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~~-----~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 88 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIPA-----DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL 88 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCCT-----TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCeEEecCCCCcc-ccCCCCCC-----CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEE
Confidence 3445555555554 34433321 45555555555555555555555555555555555555555555555555555
Q ss_pred EccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCC
Q 005711 378 DLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLS 457 (681)
Q Consensus 378 ~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 457 (681)
++++|.+++..+..+ ..+++|+.|++++|.+++..+..+..+++|++|++++|+++
T Consensus 89 ~L~~n~l~~~~~~~~------------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 144 (251)
T 3m19_A 89 GLANNQLASLPLGVF------------------------DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144 (251)
T ss_dssp ECTTSCCCCCCTTTT------------------------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcccccChhHh------------------------cccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC
Confidence 555555554444444 44445555555555554443344444555555555555555
Q ss_pred CcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccc
Q 005711 458 GSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFM 505 (681)
Q Consensus 458 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~ 505 (681)
+..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.
T Consensus 145 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 145 SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred ccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 444444455555555555555555444444444555555555555444
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=1.2e-19 Score=189.11 Aligned_cols=239 Identities=18% Similarity=0.199 Sum_probs=112.3
Q ss_pred EEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCc-ccccCCCcce-eeccc
Q 005711 328 LLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPL-NIVGCFQLLA-LIVNN 405 (681)
Q Consensus 328 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~~~~L~~-L~l~~ 405 (681)
.++.++++++ .+|..+. +++++|+|++|+++...+..|.++++|++|+|++|.+.+.+|. .|.+++++.+ +.+..
T Consensus 13 ~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 3444444444 3443331 3455555555555533333455555555555555554443432 3344444443 33334
Q ss_pred ccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCC-CcCCCcchhhhhcCC-CCCEEEccCCcCccc
Q 005711 406 NNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSS-NNLSGSLNDAITKWT-NLKYFSIARNKLSGN 483 (681)
Q Consensus 406 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~ 483 (681)
|++....+..|..+++|++|++++|++.+..+..+....++..+++.+ +++....+..+..+. .++.|++++|+++ .
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~ 168 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-E 168 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-E
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-C
Confidence 455544455555555555555555555544444444445555555543 333332233333332 3555666666555 3
Q ss_pred CCcccccCCccceeecccCccccCCCCCcccccCCccccccCCc-ccccccccceeecCCCcCcccCCCcCCCCCCCEEE
Q 005711 484 LPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPK-GLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALD 562 (681)
Q Consensus 484 ~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~-~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~ 562 (681)
+|...+...+|+.+++++++..+ .+|. .|..+++|++|||++|+++. +|. +.+.+|+.|.
T Consensus 169 i~~~~f~~~~L~~l~l~~~n~l~-----------------~i~~~~f~~l~~L~~LdLs~N~l~~-lp~-~~~~~L~~L~ 229 (350)
T 4ay9_X 169 IHNSAFNGTQLDELNLSDNNNLE-----------------ELPNDVFHGASGPVILDISRTRIHS-LPS-YGLENLKKLR 229 (350)
T ss_dssp ECTTSSTTEEEEEEECTTCTTCC-----------------CCCTTTTTTEECCSEEECTTSCCCC-CCS-SSCTTCCEEE
T ss_pred CChhhccccchhHHhhccCCccc-----------------CCCHHHhccCcccchhhcCCCCcCc-cCh-hhhccchHhh
Confidence 44444444455555554322111 3332 34555566666666666553 232 1234444444
Q ss_pred CCCCcCcccCCccccCCCCCCeEecccC
Q 005711 563 LSHNSLTGQIPGNISSLQELTLLNLSYN 590 (681)
Q Consensus 563 Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 590 (681)
+.++.--..+|. +..+++|+.++++++
T Consensus 230 ~l~~~~l~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 230 ARSTYNLKKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp CTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred hccCCCcCcCCC-chhCcChhhCcCCCC
Confidence 444433334452 455556666665543
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=9.8e-20 Score=174.85 Aligned_cols=181 Identities=19% Similarity=0.145 Sum_probs=119.0
Q ss_pred cEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccc
Q 005711 327 VLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNN 406 (681)
Q Consensus 327 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n 406 (681)
+.++++++.++ .+|..+ .++|++|++++|++++..+..+.++++|++|++++|.+++..+
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------------- 69 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPN----------------- 69 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT-----------------
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccCh-----------------
Confidence 45666666666 344333 3467777777777765555556666667777776666654333
Q ss_pred cccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCc
Q 005711 407 NLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPN 486 (681)
Q Consensus 407 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~ 486 (681)
..+..+++|++|++++|.+++..+..+.++++|++|++++|++++..+..+..+++|++|++++|.+++..+.
T Consensus 70 -------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 142 (208)
T 2o6s_A 70 -------GVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG 142 (208)
T ss_dssp -------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred -------hhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHH
Confidence 3345566666666666666655555566677777777777777665555566677777777777777655555
Q ss_pred ccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccc
Q 005711 487 WLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQG 534 (681)
Q Consensus 487 ~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~ 534 (681)
.+..+++|+.|++++|.+.+..|....|+++.|+++|.+|..++.++.
T Consensus 143 ~~~~l~~L~~L~l~~N~~~~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 143 VFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTTTCTTCCEEECCSCCBCCCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred HhccCCCccEEEecCCCeecCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 566677777777777777777777777777777777788877766554
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=3.9e-20 Score=177.65 Aligned_cols=181 Identities=23% Similarity=0.227 Sum_probs=130.1
Q ss_pred CCCCceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCcc
Q 005711 70 TNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDA 149 (681)
Q Consensus 70 c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 149 (681)
|.|.+|.|+.. ++. .+|..+ .++|++|++++|.+++..+..|+++++|++|++++|++++..+..
T Consensus 7 C~~~~v~c~~~------------~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 71 (208)
T 2o6s_A 7 CSGTTVECYSQ------------GRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV 71 (208)
T ss_dssp EETTEEECCSS------------CCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT
T ss_pred ECCCEEEecCC------------Ccc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhh
Confidence 67999988632 111 223222 347788888888887766666778888888888888887665666
Q ss_pred ccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcC---Cc
Q 005711 150 IMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFY---QS 226 (681)
Q Consensus 150 ~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~---~~ 226 (681)
|.++++|++|++++|+ +.+..+..+..+ ++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+ .+
T Consensus 72 ~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~ 149 (208)
T 2o6s_A 72 FNKLTSLTYLNLSTNQ-LQSLPNGVFDKL-TQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149 (208)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred cCCCCCcCEEECCCCc-CCccCHhHhcCc-cCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCC
Confidence 7778888888888873 444444456666 788888888888876666667778888888888888877665543 45
Q ss_pred ccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCc
Q 005711 227 LLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQA 274 (681)
Q Consensus 227 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~ 274 (681)
|++|++++|.+.+ .+++|++|+++.|+++|.+|.+++.++.
T Consensus 150 L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 150 LQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 7888888887654 3457888888888899888888877655
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=4.7e-20 Score=202.11 Aligned_cols=198 Identities=22% Similarity=0.281 Sum_probs=135.0
Q ss_pred CCCce-eecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCcc
Q 005711 71 NWTGV-ACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDA 149 (681)
Q Consensus 71 ~w~gv-~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 149 (681)
.|.++ .|. .++++.|+++++.+.+ +|..+. ++|++|+|++|.++ .+| ..+++|++|++++|++++ +|.
T Consensus 49 ~~~~l~~C~--~~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~- 117 (571)
T 3cvr_A 49 AVSLLKECL--INQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE- 117 (571)
T ss_dssp HHHHHHHHH--HTTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-
T ss_pred hhhhccccc--cCCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-
Confidence 58888 675 3478889999999887 676663 78999999999888 566 457889999999998886 666
Q ss_pred ccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccE
Q 005711 150 IMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLV 229 (681)
Q Consensus 150 ~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~ 229 (681)
+.+ +|++|++++|++ ++ +|. .+ ++|++|++++|.+++ +|. .+++|++|++++|.+++
T Consensus 118 l~~--~L~~L~Ls~N~l-~~-lp~---~l-~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~----------- 174 (571)
T 3cvr_A 118 LPA--SLKHLDVDNNQL-TM-LPE---LP-ALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF----------- 174 (571)
T ss_dssp CCT--TCCEEECCSSCC-SC-CCC---CC-TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-----------
T ss_pred hhc--CCCEEECCCCcC-CC-CCC---cC-ccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-----------
Confidence 655 888888888843 33 555 34 677777777777774 554 45677777777766665
Q ss_pred EECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcc-------cEEecCCCccccccCccccCCCCCcEE
Q 005711 230 LNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQAL-------THLNLSHNHLNYEISPRLVFFEKLLLL 302 (681)
Q Consensus 230 L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L-------~~L~L~~n~l~~~~~~~l~~l~~L~~L 302 (681)
+|. +. ++|++|++++|+++ .+|. +.. +| +.|++++|.++ .+|..+..+++|+.|
T Consensus 175 -----------lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L 235 (571)
T 3cvr_A 175 -----------LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTI 235 (571)
T ss_dssp -----------CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEE
T ss_pred -----------cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEE
Confidence 222 22 45555555555555 3444 332 44 77777777776 466666667777777
Q ss_pred eccCCCccCCCChhhhhcc
Q 005711 303 DLSFNDLSGPLPSKIAQTT 321 (681)
Q Consensus 303 ~L~~n~l~~~~p~~~~~~~ 321 (681)
++++|.+++.+|..+..+.
T Consensus 236 ~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 236 ILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp ECCSSSCCHHHHHHHHHHH
T ss_pred EeeCCcCCCcCHHHHHHhh
Confidence 7777777777776666554
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=4e-19 Score=185.05 Aligned_cols=240 Identities=18% Similarity=0.167 Sum_probs=141.1
Q ss_pred EEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccc-cccCCCCCCCE-EE
Q 005711 301 LLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIP-ARIGNLTYLQV-ID 378 (681)
Q Consensus 301 ~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~-L~ 378 (681)
.++.++++++ .+|..+. +++++|++++|+|+...+..|.++++|++|+|++|++.+.+| ..|.+++++++ +.
T Consensus 13 ~v~C~~~~Lt-~iP~~l~-----~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDLP-----RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp EEEEESTTCC-SCCTTCC-----TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred EEEecCCCCC-ccCcCcC-----CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 3445555554 4454432 156666777776664333456667777777777776655444 34566666554 44
Q ss_pred ccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEccc-CcceeccccccCCCC-CCcEEECCCCcC
Q 005711 379 LSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISN-NQISGEIPLTLAGLK-SLEIVDFSSNNL 456 (681)
Q Consensus 379 Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~-~L~~L~L~~n~l 456 (681)
++.|+++...|..|..+++|+.|++++|.+.+..+..+....++..+++.+ +.+....+..|..+. .++.|++++|++
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 455666666666666677777777777777665555555556666777755 445544444555553 567777777777
Q ss_pred CCcchhhhhcCCCCCEEEccCCcCcccCCc-ccccCCccceeecccCccccCCCCCcccccCCccccccCCccccccccc
Q 005711 457 SGSLNDAITKWTNLKYFSIARNKLSGNLPN-WLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGL 535 (681)
Q Consensus 457 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L 535 (681)
+. ++......++|+++++++++..+.+|. .+..+++|+.||+++|+++ .+|.. .+.+|
T Consensus 167 ~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~------------------~lp~~--~~~~L 225 (350)
T 4ay9_X 167 QE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH------------------SLPSY--GLENL 225 (350)
T ss_dssp CE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC------------------CCCSS--SCTTC
T ss_pred cC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC------------------ccChh--hhccc
Confidence 63 443333456677777765333334543 4566777777777766665 33432 13344
Q ss_pred ceeecCCCcCcccCCCcCCCCCCCEEECCCCc
Q 005711 536 EYLNLSFNFLDGQVPGLYRLRSLRALDLSHNS 567 (681)
Q Consensus 536 ~~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~N~ 567 (681)
+.|.+.++.--..+|.+.++++|+.++++++.
T Consensus 226 ~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 226 KKLRARSTYNLKKLPTLEKLVALMEASLTYPS 257 (350)
T ss_dssp CEEECTTCTTCCCCCCTTTCCSCCEEECSCHH
T ss_pred hHhhhccCCCcCcCCCchhCcChhhCcCCCCc
Confidence 44444333333366777778888888887654
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=2.1e-19 Score=197.04 Aligned_cols=188 Identities=27% Similarity=0.374 Sum_probs=105.8
Q ss_pred CccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecc
Q 005711 325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVN 404 (681)
Q Consensus 325 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~ 404 (681)
+++.|++++|.+++ +|..+. ++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +..
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~---------- 120 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA---------- 120 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT----------
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc----------
Confidence 56667777776664 554442 56666666666666 344 335566666666666654 443 322
Q ss_pred cccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccC
Q 005711 405 NNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNL 484 (681)
Q Consensus 405 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 484 (681)
+|+.|++++|.+++ +|. .+++|+.|++++|++++ +|. .+++|++|++++|++++ +
T Consensus 121 ----------------~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-l 175 (571)
T 3cvr_A 121 ----------------SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-L 175 (571)
T ss_dssp ----------------TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-C
T ss_pred ----------------CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-c
Confidence 45555555555553 333 34555555555555553 332 34555566666665554 4
Q ss_pred CcccccCCccceeecccCccccCCCCCcccccCCccccccCCccccc-----ccccceeecCCCcCcccCCC-cCCCCCC
Q 005711 485 PNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQ-----LQGLEYLNLSFNFLDGQVPG-LYRLRSL 558 (681)
Q Consensus 485 p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~-----l~~L~~L~Ls~N~l~~~ip~-~~~l~~L 558 (681)
|. +. ++|+.|++++|+++ .+|. +.. ...|+.|+|++|+++ .+|. ++.+++|
T Consensus 176 p~-l~--~~L~~L~Ls~N~L~------------------~lp~-~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L 232 (571)
T 3cvr_A 176 PE-LP--ESLEALDVSTNLLE------------------SLPA-VPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPT 232 (571)
T ss_dssp CC-CC--TTCCEEECCSSCCS------------------SCCC-CC--------CCEEEECCSSCCC-CCCGGGGGSCTT
T ss_pred ch-hh--CCCCEEECcCCCCC------------------chhh-HHHhhhcccccceEEecCCCcce-ecCHHHhcCCCC
Confidence 44 32 45555555555444 2333 222 122377777777777 4555 6667778
Q ss_pred CEEECCCCcCcccCCccccCC
Q 005711 559 RALDLSHNSLTGQIPGNISSL 579 (681)
Q Consensus 559 ~~L~Ls~N~l~~~~p~~l~~l 579 (681)
+.|+|++|.+++.+|..+..+
T Consensus 233 ~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 233 CTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp EEEECCSSSCCHHHHHHHHHH
T ss_pred CEEEeeCCcCCCcCHHHHHHh
Confidence 888888888877777766554
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=3.6e-19 Score=172.24 Aligned_cols=158 Identities=21% Similarity=0.244 Sum_probs=118.8
Q ss_pred cEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcch-hhhhcCCCCCEEEccCCcCcccCCcccccCCccceeeccc
Q 005711 423 KILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLN-DAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFST 501 (681)
Q Consensus 423 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~ 501 (681)
+.+++++|.++ .+|..+. +.+++|++++|++++..+ ..+..+++|++|++++|++++..+..+..+++|+.|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 35666666665 3454332 345677777777765533 3466677777777777777766566666777777666666
Q ss_pred CccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCC
Q 005711 502 NKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQ 580 (681)
Q Consensus 502 n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 580 (681)
|++++ ..|..+..+++|++|+|++|++++..|. +..+++|+.|+|++|++++..|..|..++
T Consensus 91 N~l~~-----------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 153 (220)
T 2v70_A 91 NRLEN-----------------VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH 153 (220)
T ss_dssp SCCCC-----------------CCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCT
T ss_pred CccCc-----------------cCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCC
Confidence 65542 4455678899999999999999988787 88999999999999999999999999999
Q ss_pred CCCeEecccCcceeeCCCCC
Q 005711 581 ELTLLNLSYNSFSGFVPWKQ 600 (681)
Q Consensus 581 ~L~~L~ls~N~l~~~~p~~~ 600 (681)
+|++|++++|++.|.++..+
T Consensus 154 ~L~~L~L~~N~l~c~c~l~~ 173 (220)
T 2v70_A 154 SLSTLNLLANPFNCNCYLAW 173 (220)
T ss_dssp TCCEEECCSCCEECSGGGHH
T ss_pred CCCEEEecCcCCcCCCchHH
Confidence 99999999999999887443
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=9.4e-19 Score=169.25 Aligned_cols=155 Identities=21% Similarity=0.307 Sum_probs=113.4
Q ss_pred cEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccC
Q 005711 423 KILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTN 502 (681)
Q Consensus 423 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 502 (681)
+.++++++.++ .+|..+. ++|++|++++|++++..+..+..+++|++|+|++|++++..|..+..+++|+.|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 34555555555 3444332 45666666666666555556666666666666666666655666666666666666666
Q ss_pred ccccCCCCCcccccCCccccccCC-cccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCC
Q 005711 503 KFMGFIPDAVGMDLSDNLLHGTIP-KGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQ 580 (681)
Q Consensus 503 ~~~~~~p~~~~L~Ls~N~l~g~ip-~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 580 (681)
+++ .+| ..+..+++|++|+|++|++++..|. +..+++|+.|+|++|++++..+..|..++
T Consensus 91 ~l~------------------~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 152 (220)
T 2v9t_B 91 KIT------------------ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152 (220)
T ss_dssp CCC------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred cCC------------------ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCC
Confidence 554 333 3456789999999999999988787 88999999999999999988888899999
Q ss_pred CCCeEecccCcceeeCCC
Q 005711 581 ELTLLNLSYNSFSGFVPW 598 (681)
Q Consensus 581 ~L~~L~ls~N~l~~~~p~ 598 (681)
+|+.|++++|++.|.++.
T Consensus 153 ~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 153 AIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp TCCEEECCSSCEECSGGG
T ss_pred CCCEEEeCCCCcCCCCcc
Confidence 999999999999987753
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=5.7e-18 Score=164.88 Aligned_cols=161 Identities=24% Similarity=0.251 Sum_probs=113.3
Q ss_pred CCCCCCCCCCCceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCC
Q 005711 63 SWVGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKF 142 (681)
Q Consensus 63 ~w~~~~cc~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 142 (681)
.|.+...|.|++|.|+... + +.+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++
T Consensus 12 ~~~~~~~Cs~~~v~c~~~~------------l-~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l 76 (229)
T 3e6j_A 12 ACPSQCSCSGTTVDCRSKR------------H-ASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL 76 (229)
T ss_dssp CCCTTCEEETTEEECTTSC------------C-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cCCCCCEEeCCEeEccCCC------------c-CccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC
Confidence 4467778999999996321 1 13343333 6777888888888777777777788888888888887
Q ss_pred CCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccC
Q 005711 143 VGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHD 222 (681)
Q Consensus 143 ~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~ 222 (681)
.+..+..|.++++|++|++++| .+.+..+..+..+ ++|++|++++|.++ .+|..+..+++|++|++++|.+++..+.
T Consensus 77 ~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l-~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~ 153 (229)
T 3e6j_A 77 GALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRL-VHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHG 153 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTC-TTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTT
T ss_pred CCcChhhcccCCCcCEEECCCC-cCCccChhHhCcc-hhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHH
Confidence 7555566777788888888877 4444445555666 77888888888777 6777777778888888888877766654
Q ss_pred cC---CcccEEECCCCCCcccc
Q 005711 223 FY---QSLLVLNLGSNRFSGTL 241 (681)
Q Consensus 223 ~~---~~L~~L~L~~n~l~~~~ 241 (681)
.+ .+|+.|++++|.+....
T Consensus 154 ~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 154 AFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp TTTTCTTCCEEECTTSCBCTTB
T ss_pred HHhCCCCCCEEEeeCCCccCCc
Confidence 43 45778888888776543
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=1.4e-17 Score=168.51 Aligned_cols=186 Identities=24% Similarity=0.314 Sum_probs=109.6
Q ss_pred EeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcc
Q 005711 353 LFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQI 432 (681)
Q Consensus 353 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 432 (681)
+.+..+.+.+.. .+..+++|+.|++++|.+... + .+ ..+++|+.|++++|.+
T Consensus 29 ~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~------------------------~~l~~L~~L~L~~n~l 80 (291)
T 1h6t_A 29 DNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GI------------------------QYLPNVTKLFLNGNKL 80 (291)
T ss_dssp HHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TG------------------------GGCTTCCEEECCSSCC
T ss_pred HHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hH------------------------hcCCCCCEEEccCCcc
Confidence 344455444332 233456677777776666532 2 23 3445555555555555
Q ss_pred eeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccCCCCCc
Q 005711 433 SGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAV 512 (681)
Q Consensus 433 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~ 512 (681)
++..+ +..+++|++|++++|.+++ ++ .+..+++|++|++++|.+++. ..+..+++|+.|++++|++++
T Consensus 81 ~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~------ 148 (291)
T 1h6t_A 81 TDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD------ 148 (291)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC------
T ss_pred CCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCc------
Confidence 54332 5555555555555555553 22 255556666666666655532 334555555555555554432
Q ss_pred ccccCCccccccCCcccccccccceeecCCCcCcccCCCcCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcc
Q 005711 513 GMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSF 592 (681)
Q Consensus 513 ~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 592 (681)
+ ..+..+++|+.|++++|++++..| +..+++|+.|++++|.+++ +| .+..+++|+.|++++|++
T Consensus 149 ------------~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 149 ------------I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp ------------C-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEE
T ss_pred ------------c-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcc
Confidence 2 345667778888888887776544 7777888888888888875 34 377788888888888877
Q ss_pred ee
Q 005711 593 SG 594 (681)
Q Consensus 593 ~~ 594 (681)
..
T Consensus 213 ~~ 214 (291)
T 1h6t_A 213 LN 214 (291)
T ss_dssp EC
T ss_pred cC
Confidence 65
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=1.6e-17 Score=161.69 Aligned_cols=155 Identities=21% Similarity=0.230 Sum_probs=112.9
Q ss_pred ccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeeccc
Q 005711 422 LKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFST 501 (681)
Q Consensus 422 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~ 501 (681)
-+.++.+++.+. .+|..+. ++|++|++++|.+++..|..+..+++|++|++++|++.+..+..+..+++|+.|++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 345666666655 4444332 6677777777777766666666777777777777777544444556666666666666
Q ss_pred CccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCC
Q 005711 502 NKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQ 580 (681)
Q Consensus 502 n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 580 (681)
|++++ ..+..+..+++|++|+|++|+++ .+|. +..+++|+.|++++|++++..+..+..++
T Consensus 98 N~l~~-----------------l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 159 (229)
T 3e6j_A 98 NQLTV-----------------LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS 159 (229)
T ss_dssp SCCCC-----------------CCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred CcCCc-----------------cChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCC
Confidence 65542 33445677889999999999998 5666 88899999999999999977777889999
Q ss_pred CCCeEecccCcceeeCC
Q 005711 581 ELTLLNLSYNSFSGFVP 597 (681)
Q Consensus 581 ~L~~L~ls~N~l~~~~p 597 (681)
+|+.|++++|++.|.++
T Consensus 160 ~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 160 SLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TCCEEECTTSCBCTTBG
T ss_pred CCCEEEeeCCCccCCcc
Confidence 99999999999998876
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=1.5e-17 Score=184.47 Aligned_cols=172 Identities=27% Similarity=0.359 Sum_probs=103.4
Q ss_pred CCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCC
Q 005711 295 FFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYL 374 (681)
Q Consensus 295 ~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 374 (681)
.+++|+.|++++|.+.. +| .+..+. +|+.|+|++|.+++..| +..+++|+.|+|++|.+.+ ++ .+..+++|
T Consensus 41 ~L~~L~~L~l~~n~i~~-l~-~l~~l~---~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L 111 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKS-VQ-GIQYLP---NVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKL 111 (605)
T ss_dssp HHTTCCCCBCTTCCCCC-CT-TGGGCT---TCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTC
T ss_pred cCCCCCEEECcCCCCCC-Ch-HHccCC---CCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCC
Confidence 34455555555555442 22 222222 55555555555554333 5555566666666665553 22 45556666
Q ss_pred CEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCC
Q 005711 375 QVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSN 454 (681)
Q Consensus 375 ~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 454 (681)
+.|+|++|.+.+. ..+..+++|+.|++++|.+.+. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|
T Consensus 112 ~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 112 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 185 (605)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence 6666666665542 2355556666666666666554 346677777888888887776655 777788888888888
Q ss_pred cCCCcchhhhhcCCCCCEEEccCCcCccc
Q 005711 455 NLSGSLNDAITKWTNLKYFSIARNKLSGN 483 (681)
Q Consensus 455 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 483 (681)
++++. + .+..+++|+.|+|++|.+.+.
T Consensus 186 ~i~~l-~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 186 HISDL-R-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCCBC-G-GGTTCTTCSEEECCSEEEECC
T ss_pred CCCCC-h-HHccCCCCCEEEccCCcCcCC
Confidence 77753 3 467778888888888877654
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.73 E-value=3.6e-17 Score=158.11 Aligned_cols=152 Identities=20% Similarity=0.289 Sum_probs=92.4
Q ss_pred cEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccc
Q 005711 327 VLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNN 406 (681)
Q Consensus 327 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n 406 (681)
+.++++++.++ .+|..+. ++++.|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 34555555555 3444332 45666666666665555555556666666666666666555555555555555555555
Q ss_pred cccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCc
Q 005711 407 NLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLS 481 (681)
Q Consensus 407 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 481 (681)
.++...+..|..+++|+.|++++|.+++..|..|..+++|++|++++|++++..+..+..+++|++|++++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 555444444566666777777777776666666666777777777777776665556666666777777766665
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=3.3e-17 Score=158.36 Aligned_cols=153 Identities=21% Similarity=0.269 Sum_probs=87.5
Q ss_pred EEEccCCCCcCCCcccccCCCCCCEEeccCCccccccc-cccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccc
Q 005711 328 LLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIP-ARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNN 406 (681)
Q Consensus 328 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n 406 (681)
.+++++|.++ .+|..+. +.+++|++++|++++..+ ..|.++++|++|++++|.+++..+..+.++++|++|++++|
T Consensus 15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 4555555554 2443332 234555555555554432 23455555555555555555544445555555555555555
Q ss_pred cccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCccc
Q 005711 407 NLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGN 483 (681)
Q Consensus 407 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 483 (681)
.+++..+..|..+++|++|++++|.+++..|..|.++++|++|++++|++++..|..+..+++|++|++++|.+.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 55555555556666666666666666665566666666666666666666665566666666666666666666543
No 109
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.73 E-value=7.2e-19 Score=199.95 Aligned_cols=215 Identities=22% Similarity=0.173 Sum_probs=106.8
Q ss_pred HHhHHHHHHHHhcCCCC-CCCCCCC--CCCCCCCCCceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCc
Q 005711 41 LEDKASLLLFKSLVQDP-TQKLSSW--VGSNCTNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNA 117 (681)
Q Consensus 41 ~~~~~~l~~~~~~~~~~-~~~~~~w--~~~~cc~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~ 117 (681)
..++++++++......+ ...-..| .....+.|.++.++ ..++++|+|..+.+... +..+ |+.++|+.|.
T Consensus 131 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~~~~~~l~L~~n~~~~~-~~~~-----l~~l~Ls~~~ 202 (727)
T 4b8c_D 131 DCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVS--TPLTPKIELFANGKDEA-NQAL-----LQHKKLSQYS 202 (727)
T ss_dssp -CCCHHHHHHHHHHHHHHTTC-----------------------------------------------------------
T ss_pred ccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceec--CCccceEEeeCCCCCcc-hhhH-----hhcCccCccc
Confidence 45566888887765432 2233456 23456779888875 47899999998887753 3333 3334444444
Q ss_pred CCc---------cccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEcc
Q 005711 118 FTG---------RISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFS 188 (681)
Q Consensus 118 l~~---------~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~ 188 (681)
+.+ ..+..|..++.|++|+|++|.+. .+|..+.++++|++|+|++|.+ . .+|..++++ ++|++|+|+
T Consensus 203 i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l-~-~lp~~~~~l-~~L~~L~Ls 278 (727)
T 4b8c_D 203 IDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSL-T-ELPAEIKNL-SNLRVLDLS 278 (727)
T ss_dssp -------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCC-S-CCCGGGGGG-TTCCEEECT
T ss_pred ccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcC-c-ccChhhhCC-CCCCEEeCc
Confidence 332 35777889999999999999988 6787788899999999999954 3 788888888 889999999
Q ss_pred CCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChh
Q 005711 189 FNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTC 268 (681)
Q Consensus 189 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~ 268 (681)
+|.++ .+|..++++++|++|+|++|.++ .+|..++.+++|++|+|++|.+++.+|..
T Consensus 279 ~N~l~-~lp~~~~~l~~L~~L~L~~N~l~----------------------~lp~~~~~l~~L~~L~L~~N~l~~~~p~~ 335 (727)
T 4b8c_D 279 HNRLT-SLPAELGSCFQLKYFYFFDNMVT----------------------TLPWEFGNLCNLQFLGVEGNPLEKQFLKI 335 (727)
T ss_dssp TSCCS-SCCSSGGGGTTCSEEECCSSCCC----------------------CCCSSTTSCTTCCCEECTTSCCCSHHHHH
T ss_pred CCcCC-ccChhhcCCCCCCEEECCCCCCC----------------------ccChhhhcCCCccEEeCCCCccCCCChHH
Confidence 99988 77888888888888888887775 33444455555555555555555555444
Q ss_pred hcccCc-ccEEecCCCccccccC
Q 005711 269 IASLQA-LTHLNLSHNHLNYEIS 290 (681)
Q Consensus 269 l~~l~~-L~~L~L~~n~l~~~~~ 290 (681)
+..+.. +..+++++|.+++.+|
T Consensus 336 ~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 336 LTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp HHHHHHHHHHHHHHHCCCCCCCC
T ss_pred HhhcchhhhHHhhccCcccCcCc
Confidence 433211 1123444454444444
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=1.8e-17 Score=173.22 Aligned_cols=175 Identities=26% Similarity=0.239 Sum_probs=101.8
Q ss_pred EEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCccccc-CCCCCCEEeccCCccccccccccCCCCCCCEEEc
Q 005711 301 LLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKIT-ELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDL 379 (681)
Q Consensus 301 ~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 379 (681)
.++++++.++ .+|..+.. .++.|++++|++++..+..+. .+++|++|+|++|++++..+..|.++++|++|++
T Consensus 22 ~l~c~~~~l~-~iP~~~~~-----~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 22 ILSCSKQQLP-NVPQSLPS-----YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp EEECCSSCCS-SCCSSCCT-----TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred EEEeCCCCcC-ccCccCCC-----CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 4555555554 34443322 466666666666655555555 6666777777777666655566666666777777
Q ss_pred cCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceecccccc---CCCCCCcEEECCCCcC
Q 005711 380 SHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTL---AGLKSLEIVDFSSNNL 456 (681)
Q Consensus 380 s~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~---~~l~~L~~L~L~~n~l 456 (681)
++|.+++..+..|..+++|+.|++++|.+.+..+..|..+++|+.|+|++|.+++..+..+ ..+++|+.|+|++|++
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 7666665555555556666666666666655555556666666666666666664333333 3456666666666666
Q ss_pred CCcchhhhhcCCC--CCEEEccCCcCc
Q 005711 457 SGSLNDAITKWTN--LKYFSIARNKLS 481 (681)
Q Consensus 457 ~~~~~~~~~~l~~--L~~L~L~~n~l~ 481 (681)
++..+..+..++. ++.|++++|.+.
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CccCHHHhhhccHhhcceEEecCCCcc
Confidence 6544455555554 255666666554
No 111
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=1.7e-17 Score=167.76 Aligned_cols=190 Identities=20% Similarity=0.289 Sum_probs=124.0
Q ss_pred ccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeeccc
Q 005711 326 LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNN 405 (681)
Q Consensus 326 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~ 405 (681)
+..+.+..+.+++..+ +..+++|+.|++++|.+... + .+..+++|++|++++|.+++..+ +..+++
T Consensus 26 ~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~-------- 91 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKN-------- 91 (291)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTT--------
T ss_pred HHHHHhcCCCcccccc--hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCC--------
Confidence 4445566676664432 45678999999999998754 3 48889999999999999886433 444444
Q ss_pred ccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCC
Q 005711 406 NNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLP 485 (681)
Q Consensus 406 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 485 (681)
|+.|++++|.+++ ++ .+..+++|++|++++|++++. ..+..+++|++|++++|++++.
T Consensus 92 ----------------L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-- 149 (291)
T 1h6t_A 92 ----------------LGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-- 149 (291)
T ss_dssp ----------------CCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--
T ss_pred ----------------CCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--
Confidence 4555555554443 12 255555666666666655542 2455566666666666666542
Q ss_pred cccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCCcCCCCCCCEEECCC
Q 005711 486 NWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSH 565 (681)
Q Consensus 486 ~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~ 565 (681)
..+..+++|+.|++++|++.+ ++. +..+++|+.|++++|++++ +|.+..+++|+.|++++
T Consensus 150 ~~l~~l~~L~~L~L~~N~l~~------------------~~~-l~~l~~L~~L~L~~N~i~~-l~~l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 150 TVLSRLTKLDTLSLEDNQISD------------------IVP-LAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFS 209 (291)
T ss_dssp GGGGGCTTCSEEECCSSCCCC------------------CGG-GTTCTTCCEEECCSSCCCB-CGGGTTCTTCSEEEEEE
T ss_pred hhhccCCCCCEEEccCCcccc------------------chh-hcCCCccCEEECCCCcCCC-ChhhccCCCCCEEECcC
Confidence 345556666666655555542 222 6677788888888888874 56677888888888888
Q ss_pred CcCccc
Q 005711 566 NSLTGQ 571 (681)
Q Consensus 566 N~l~~~ 571 (681)
|.++..
T Consensus 210 n~i~~~ 215 (291)
T 1h6t_A 210 QECLNK 215 (291)
T ss_dssp EEEECC
T ss_pred CcccCC
Confidence 888753
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=4.1e-17 Score=170.52 Aligned_cols=178 Identities=22% Similarity=0.158 Sum_probs=153.7
Q ss_pred ccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccC-CCCCCCEEEccCCcCccccCcccccCCCcceeecc
Q 005711 326 LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIG-NLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVN 404 (681)
Q Consensus 326 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~ 404 (681)
-+.++++++.++ .+|..+. +.++.|+|++|++++..+..+. ++++|++|++++|.+++..+..|..+++|+.|+++
T Consensus 20 ~~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 468999999998 5776554 4689999999999988877787 89999999999999998888889999999999999
Q ss_pred cccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhh---hcCCCCCEEEccCCcCc
Q 005711 405 NNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAI---TKWTNLKYFSIARNKLS 481 (681)
Q Consensus 405 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~ 481 (681)
+|.+.+..+..|..+++|+.|+|++|.+++..|..|.++++|++|+|++|++++..+..+ ..+++|++|+|++|+++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 999998888889999999999999999998888999999999999999999997555555 57899999999999998
Q ss_pred ccCCcccccCCc--cceeecccCcccc
Q 005711 482 GNLPNWLFSFQA--IQMMDFSTNKFMG 506 (681)
Q Consensus 482 ~~~p~~~~~l~~--L~~L~ls~n~~~~ 506 (681)
+..+..+..++. ++.|++++|.+..
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred ccCHHHhhhccHhhcceEEecCCCccC
Confidence 655566777776 4788999888764
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=1.7e-17 Score=183.98 Aligned_cols=190 Identities=18% Similarity=0.287 Sum_probs=141.1
Q ss_pred CCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEE
Q 005711 298 KLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVI 377 (681)
Q Consensus 298 ~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 377 (681)
.+..+.+..+.+.+..+ +..+. .|+.|++++|.+.. +| .+..+++|+.|+|++|.+.+..+ +..+++|+.|
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~---~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L 92 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELN---SIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWL 92 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHT---TCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEE
T ss_pred HHHHHhccCCCcccccc--hhcCC---CCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEE
Confidence 44555666666654333 23344 78888898888874 44 47788889999999988886554 7888889999
Q ss_pred EccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCC
Q 005711 378 DLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLS 457 (681)
Q Consensus 378 ~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 457 (681)
+|++|.+.+ +| .+..+++|+.|++++|.+.+. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.++
T Consensus 93 ~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 93 FLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 166 (605)
T ss_dssp ECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred ECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence 998888875 33 677788888888888888763 3467788888888888888764 56777888888888888887
Q ss_pred CcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCcccc
Q 005711 458 GSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMG 506 (681)
Q Consensus 458 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~ 506 (681)
+..| +..+++|+.|+|++|.+++. +.+..+++|+.|++++|++.+
T Consensus 167 ~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 167 DIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred Cchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 6655 77788888888888888753 347777778888777777664
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=7.4e-20 Score=201.72 Aligned_cols=201 Identities=17% Similarity=0.139 Sum_probs=112.7
Q ss_pred CCCCCCEEeccCCccccccccccCCCCCCCEEEccCCc-------------CccccCcccccCCCcceee-ccccccccc
Q 005711 346 ELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNM-------------LSGSIPLNIVGCFQLLALI-VNNNNLSGE 411 (681)
Q Consensus 346 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-------------l~~~~p~~~~~~~~L~~L~-l~~n~l~~~ 411 (681)
.++.|+.|+|++|++. .+|..++++++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~--- 422 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL--- 422 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH---
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc---
Confidence 3455555555555554 455555555555555554443 3344444455555555554 333322
Q ss_pred CccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccC
Q 005711 412 IQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSF 491 (681)
Q Consensus 412 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 491 (681)
..|+.+.+++|.++...+ ..|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+..+
T Consensus 423 --------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 485 (567)
T 1dce_A 423 --------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAAL 485 (567)
T ss_dssp --------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGC
T ss_pred --------chhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcC
Confidence 123334444454443221 236677777777764 454 666777777777777766 566666666
Q ss_pred CccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccC-CC-cCCCCCCCEEECCCCcCc
Q 005711 492 QAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQV-PG-LYRLRSLRALDLSHNSLT 569 (681)
Q Consensus 492 ~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~i-p~-~~~l~~L~~L~Ls~N~l~ 569 (681)
++|+.|++++|+++ .+| .++++++|+.|+|++|++++.+ |. ++.+++|+.|+|++|.++
T Consensus 486 ~~L~~L~Ls~N~l~------------------~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 486 RCLEVLQASDNALE------------------NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp TTCCEEECCSSCCC------------------CCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred CCCCEEECCCCCCC------------------CCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 66666665555544 234 5566666666666666666654 55 666666666666666666
Q ss_pred ccCCcc---ccCCCCCCeEe
Q 005711 570 GQIPGN---ISSLQELTLLN 586 (681)
Q Consensus 570 ~~~p~~---l~~l~~L~~L~ 586 (681)
+.+|.. +..+++|+.||
T Consensus 547 ~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 547 QEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp GSSSCTTHHHHHCTTCSEEE
T ss_pred CCccHHHHHHHHCcccCccC
Confidence 554432 22356666665
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=4.7e-20 Score=203.29 Aligned_cols=217 Identities=24% Similarity=0.170 Sum_probs=132.5
Q ss_pred cCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCcCccccCccccCCCCC
Q 005711 127 GGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSL 206 (681)
Q Consensus 127 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L 206 (681)
..+++|+.|+|++|+++ .+|..++++++|++|++++| .....+|..+ ..+...+.+|..++++++|
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n-~~l~~l~~ll------------~~~~~~~~~~~~l~~l~~L 411 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENK-WCLLTIILLM------------RALDPLLYEKETLQYFSTL 411 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCH-HHHHHHHHHH------------HHHCTGGGHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccc-hhhhhHHHHH------------HhcccccCCHHHHHHHHhc
Confidence 57888888999988887 77888888889998888766 2101111110 1122334555666666666
Q ss_pred CEEE-ccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCcc
Q 005711 207 KHLD-LEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHL 285 (681)
Q Consensus 207 ~~L~-L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 285 (681)
+.|+ ++.|.+. +|+.+.+.+|.++...+ ..|+.|++++|.+++ +|. ++.+++|+.|++++|.+
T Consensus 412 ~~L~~l~~n~~~--------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l 475 (567)
T 1dce_A 412 KAVDPMRAAYLD--------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRL 475 (567)
T ss_dssp HHHCGGGHHHHH--------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCC
T ss_pred ccCcchhhcccc--------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCcccc
Confidence 6666 4444332 12222233333221111 136666666666664 454 66667777777777776
Q ss_pred ccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCC-cccccCCCCCCEEeccCCcccccc
Q 005711 286 NYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEI-PLKITELKSLQALFLSNNLLIGEI 364 (681)
Q Consensus 286 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~ 364 (681)
+ .+|..++.+++|+.|+|++|.+++ +| .++.+. +|+.|++++|++++.. |..+..+++|+.|++++|.+++..
T Consensus 476 ~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~---~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 476 R-ALPPALAALRCLEVLQASDNALEN-VD-GVANLP---RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp C-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCS---SCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred c-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCC---CCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 6 566667777777777777777765 45 454444 6777777777777665 777777777777777777777654
Q ss_pred ccc---cCCCCCCCEEEc
Q 005711 365 PAR---IGNLTYLQVIDL 379 (681)
Q Consensus 365 ~~~---l~~l~~L~~L~L 379 (681)
|.. +..+++|+.|++
T Consensus 550 ~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 550 GIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCTTHHHHHCTTCSEEEC
T ss_pred cHHHHHHHHCcccCccCC
Confidence 421 223677777754
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=2.7e-17 Score=163.64 Aligned_cols=170 Identities=19% Similarity=0.277 Sum_probs=120.6
Q ss_pred CCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEE
Q 005711 395 CFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFS 474 (681)
Q Consensus 395 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 474 (681)
+.++..++++++.+.+.. .+..+++|+.|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 334555556666555433 35566777777777777763 44 56677777777777777775444 77777788888
Q ss_pred ccCCcCcccCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCCcCC
Q 005711 475 IARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYR 554 (681)
Q Consensus 475 L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~ 554 (681)
+++|++++ +|.... ++|+.|++++|+++ .+| .+..+++|+.|++++|++++ +|.+..
T Consensus 92 L~~N~l~~-l~~~~~--~~L~~L~L~~N~l~------------------~~~-~l~~l~~L~~L~Ls~N~i~~-~~~l~~ 148 (263)
T 1xeu_A 92 VNRNRLKN-LNGIPS--ACLSRLFLDNNELR------------------DTD-SLIHLKNLEILSIRNNKLKS-IVMLGF 148 (263)
T ss_dssp CCSSCCSC-CTTCCC--SSCCEEECCSSCCS------------------BSG-GGTTCTTCCEEECTTSCCCB-CGGGGG
T ss_pred CCCCccCC-cCcccc--CcccEEEccCCccC------------------CCh-hhcCcccccEEECCCCcCCC-ChHHcc
Confidence 88887764 333222 56666666666554 223 47788899999999999885 466888
Q ss_pred CCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcceee
Q 005711 555 LRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGF 595 (681)
Q Consensus 555 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 595 (681)
+++|+.|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 149 l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 149 LSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 89999999999999876 5688889999999999998765
No 117
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=3.5e-17 Score=154.62 Aligned_cols=154 Identities=19% Similarity=0.265 Sum_probs=102.5
Q ss_pred cEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCc-ccccCCccceeecccCccccCCCCCcccccCCccccccC
Q 005711 447 EIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPN-WLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTI 525 (681)
Q Consensus 447 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~i 525 (681)
+++++++|.++ .+|..+. .++++|++++|.+++..+. .+..+++|+.|++++|+++ +..
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~-----------------~~~ 70 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-----------------GIE 70 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-----------------CBC
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCC-----------------CcC
Confidence 34555555553 3333222 2555556666655543332 2455555555555544443 245
Q ss_pred CcccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcceeeCCCCCCCCC
Q 005711 526 PKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGYQK 604 (681)
Q Consensus 526 p~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~ 604 (681)
|..+.++++|++|+|++|++++..|. +..+++|+.|+|++|++++.+|..+..+++|++|++++|++.|.++..+....
T Consensus 71 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~ 150 (192)
T 1w8a_A 71 PNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEW 150 (192)
T ss_dssp TTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHH
T ss_pred HhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHH
Confidence 67778888999999999999988877 88899999999999999999999999999999999999999988874332111
Q ss_pred ccc-cccCCCCCCCCCC
Q 005711 605 FPG-AFAGNPNLCLESS 620 (681)
Q Consensus 605 ~~~-~~~gn~~lc~~~~ 620 (681)
+.. .+.++...|+.|.
T Consensus 151 l~~~~~~~~~~~C~~P~ 167 (192)
T 1w8a_A 151 LRKKSLNGGAARCGAPS 167 (192)
T ss_dssp HHHHCCSGGGCBBCSST
T ss_pred HHHcCCCCCCCCCCCCh
Confidence 212 3455555666553
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=4.4e-17 Score=154.70 Aligned_cols=155 Identities=15% Similarity=0.262 Sum_probs=102.9
Q ss_pred CCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccce
Q 005711 417 DALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQM 496 (681)
Q Consensus 417 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 496 (681)
..+++|+.|++++|.+. .+| .+..+++|++|++++|.++. +..+..+++|++|++++|.+++..|..+..+++|+.
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 34556666777766666 344 46666677777777775542 235666777777777777776666666666666666
Q ss_pred eecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCCcCCCCCCCEEECCCCcCcccCCccc
Q 005711 497 MDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNI 576 (681)
Q Consensus 497 L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~N~l~~~~p~~l 576 (681)
|++++|++++ ..|..+..+++|++|++++|++.+.+|.+..+++|+.|++++|++++ ++ .+
T Consensus 117 L~Ls~n~i~~-----------------~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~-~~-~l 177 (197)
T 4ezg_A 117 LDISHSAHDD-----------------SILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD-YR-GI 177 (197)
T ss_dssp EECCSSBCBG-----------------GGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC-CT-TG
T ss_pred EEecCCccCc-----------------HhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC-hH-Hh
Confidence 6666555442 45566777788888888888733356667778888888888888875 33 67
Q ss_pred cCCCCCCeEecccCccee
Q 005711 577 SSLQELTLLNLSYNSFSG 594 (681)
Q Consensus 577 ~~l~~L~~L~ls~N~l~~ 594 (681)
..+++|++|++++|++.+
T Consensus 178 ~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 178 EDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp GGCSSCCEEEECBC----
T ss_pred ccCCCCCEEEeeCcccCC
Confidence 778888888888888653
No 119
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=2.2e-16 Score=149.80 Aligned_cols=107 Identities=18% Similarity=0.276 Sum_probs=64.5
Q ss_pred cCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccE
Q 005711 345 TELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKI 424 (681)
Q Consensus 345 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 424 (681)
..+++|++|++++|.++ .+| .+..+++|++|++++|.++. + ..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~------------------------~~l~~l~~L~~ 92 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--Y------------------------NPISGLSNLER 92 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--C------------------------GGGTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--c------------------------hhhhcCCCCCE
Confidence 44566677777777665 334 46666666666666664431 1 13445566666
Q ss_pred EEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCc
Q 005711 425 LDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNK 479 (681)
Q Consensus 425 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 479 (681)
|++++|.+++..+..++.+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 93 L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 93 LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp EEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred EEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence 6666666665555666666666666666666665555566666666666666665
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=3.2e-17 Score=186.39 Aligned_cols=142 Identities=23% Similarity=0.285 Sum_probs=75.1
Q ss_pred cccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCC
Q 005711 364 IPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGL 443 (681)
Q Consensus 364 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 443 (681)
.+..+..++.|+.|+|++|.+. .+|..+..+++|+.|++++|.++ .+|..+..+++|+.|+|++|.++ .+|..+.++
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 3444555556666666666555 45555555555555555555555 45555555666666666666665 455555666
Q ss_pred CCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCc-cceeecccCccccCCC
Q 005711 444 KSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQA-IQMMDFSTNKFMGFIP 509 (681)
Q Consensus 444 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~-L~~L~ls~n~~~~~~p 509 (681)
++|++|+|++|.++ .+|..+..+++|++|+|++|.+++.+|..+..... ...+++++|.++|.+|
T Consensus 293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 66666666666554 44555556666666666666666555554433221 1124445555544444
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=1.8e-16 Score=157.66 Aligned_cols=145 Identities=23% Similarity=0.357 Sum_probs=73.2
Q ss_pred CccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecc
Q 005711 325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVN 404 (681)
Q Consensus 325 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~ 404 (681)
+|+.|++++|.++ .+| .+..+++|++|++++|++++..+ +.++++|++|++++|++++ +|... . ++|+.|+++
T Consensus 42 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~L~ 114 (263)
T 1xeu_A 42 GVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGIP-S-ACLSRLFLD 114 (263)
T ss_dssp TCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTCC-C-SSCCEEECC
T ss_pred cCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCccc-c-CcccEEEcc
Confidence 4444455544444 223 34445555555555555543322 4555555555555555543 22111 1 344444444
Q ss_pred cccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcc
Q 005711 405 NNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSG 482 (681)
Q Consensus 405 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 482 (681)
+|.+++. ..+..+++|+.|++++|++++. + .+..+++|++|++++|++++. ..+..+++|++|++++|.+.+
T Consensus 115 ~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 115 NNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp SSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred CCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 4444432 1345556666666666666543 2 455566666666666666544 445556666666666666553
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.64 E-value=6e-16 Score=146.07 Aligned_cols=155 Identities=23% Similarity=0.243 Sum_probs=102.0
Q ss_pred cEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchh-hhhcCCCCCEEEccCCcCcccCCcccccCCccceeeccc
Q 005711 423 KILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLND-AITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFST 501 (681)
Q Consensus 423 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~ 501 (681)
+.+++++|.++ .+|..+. .++++|++++|++++..+. .+..+++|++|++++|++++..|..+..+++|+.|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 55666666664 4554433 2667777777777655443 366777777777777777766666677777777666666
Q ss_pred CccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCC
Q 005711 502 NKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQ 580 (681)
Q Consensus 502 n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 580 (681)
|++++ ..|..+.++++|++|+|++|++++.+|. +..+++|+.|++++|.+++..+... -..
T Consensus 88 N~l~~-----------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~-~~~ 149 (192)
T 1w8a_A 88 NKIKE-----------------ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAE 149 (192)
T ss_dssp CCCCE-----------------ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHH
T ss_pred CcCCc-----------------cCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchH-HHH
Confidence 65543 4455677788899999999999888887 8888999999999999987765211 001
Q ss_pred CCCeEecccCcceeeCCC
Q 005711 581 ELTLLNLSYNSFSGFVPW 598 (681)
Q Consensus 581 ~L~~L~ls~N~l~~~~p~ 598 (681)
.++...+..+...|..|.
T Consensus 150 ~l~~~~~~~~~~~C~~P~ 167 (192)
T 1w8a_A 150 WLRKKSLNGGAARCGAPS 167 (192)
T ss_dssp HHHHHCCSGGGCBBCSST
T ss_pred HHHHcCCCCCCCCCCCCh
Confidence 122223445555555553
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=6e-16 Score=159.56 Aligned_cols=260 Identities=12% Similarity=0.064 Sum_probs=131.0
Q ss_pred CCCCCEEEccCccCc--ccccCcCCcccEEECCCCCCccccchhhcc--------CCCCCEEEccCCccccCCChhhccc
Q 005711 203 LKSLKHLDLEKNNLT--GNVHDFYQSLLVLNLGSNRFSGTLPCFAAS--------AMSLTVLKLDNNSVVGGIPTCIASL 272 (681)
Q Consensus 203 l~~L~~L~L~~n~l~--~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~--------~~~L~~L~L~~n~l~~~~p~~l~~l 272 (681)
+++|++|||++|.+. ......+..++.+.+..|.+ .+..|.+ +++|+.|++.+ .++...+.+|.++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~ 123 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGC 123 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTC
T ss_pred hccCeEEecCcceeEEecCcccccccccccccccccc---CHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcC
Confidence 566666666666665 22222333333333333321 1233444 78888888877 6666666677778
Q ss_pred CcccEEecCCCccccccCccccCCCCCcEEeccCCCc----cCCCChhhhhcccCCCcc-EEEccCCCCcCCCcccc---
Q 005711 273 QALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDL----SGPLPSKIAQTTEKAGLV-LLDLSHNRFSGEIPLKI--- 344 (681)
Q Consensus 273 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l----~~~~p~~~~~~~~~~~L~-~L~Ls~n~l~~~~p~~l--- 344 (681)
++|+.+++.+|.+....+..|..+.++..+....+.. .......+..+. .|+ .+.+.... .++..+
T Consensus 124 ~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~---~L~~~i~~~~~~---~l~~~~~~~ 197 (329)
T 3sb4_A 124 DNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE---PLETTIQVGAMG---KLEDEIMKA 197 (329)
T ss_dssp TTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC---CCEEEEEECTTC---CHHHHHHHT
T ss_pred cccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc---ccceeEEecCCC---cHHHHHhhc
Confidence 8888888888777655566666666666655544211 000011111111 233 22222211 111111
Q ss_pred -cCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCcc
Q 005711 345 -TELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLK 423 (681)
Q Consensus 345 -~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 423 (681)
....+++.+.+.++-...........+++|+.+++++|.++...+..|.+|.+|+.+++.+| +....+.+|.++++|+
T Consensus 198 ~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~ 276 (329)
T 3sb4_A 198 GLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLA 276 (329)
T ss_dssp TCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred ccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhcc
Confidence 11234444444433211111110112556666666666655444445555666666666554 4444444566666666
Q ss_pred -EEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEE
Q 005711 424 -ILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFS 474 (681)
Q Consensus 424 -~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 474 (681)
.+++.+ .++...+..|.+|++|+.+++++|+++...+.+|.++++|+.++
T Consensus 277 ~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 277 GTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 666665 45544455666666666666666666655555666666666654
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=7.8e-16 Score=158.71 Aligned_cols=289 Identities=13% Similarity=0.070 Sum_probs=170.9
Q ss_pred CCCCCEEEccCCCCCCcCCccccC-CCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCcCccccCccccC-----
Q 005711 129 LSGLKTLDLSYNKFVGVVPDAIMK-LRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYY----- 202 (681)
Q Consensus 129 l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~----- 202 (681)
+.+++.|.++++ +....-..+.. +++|++|||++|++..-..+. +.+ +.++.+.+..|.+ .+.+|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~--~~~-~~~~~~~~~~~~I---~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA--GTY-PNGKFYIYMANFV---PAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESS--SSS-GGGCCEEECTTEE---CTTTTEEEETTE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcc--ccc-ccccccccccccc---CHHHhccccccc
Confidence 567788888764 22111122333 667777777777433000000 011 1223333333321 1223444
Q ss_pred ---CCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcccEEe
Q 005711 203 ---LKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLN 279 (681)
Q Consensus 203 ---l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 279 (681)
+++|+.+++.+ .++ ..-+.+|..+++|+.+++++|.+....+..|..+.++..+.
T Consensus 97 ~~g~~~L~~l~L~~-~i~---------------------~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~ 154 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIK---------------------NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIP 154 (329)
T ss_dssp EEECTTCCC-CBCT-TCC---------------------EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEEC
T ss_pred ccccCCCcEEECCc-ccc---------------------chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEec
Confidence 66666666665 444 23345566777777777777776655566666666666665
Q ss_pred cCCCcc----ccccCccccCCCCCc-EEeccCCCccCCCChhhhhc-ccCCCccEEEccCCCCcCCCcccccCCCCCCEE
Q 005711 280 LSHNHL----NYEISPRLVFFEKLL-LLDLSFNDLSGPLPSKIAQT-TEKAGLVLLDLSHNRFSGEIPLKITELKSLQAL 353 (681)
Q Consensus 280 L~~n~l----~~~~~~~l~~l~~L~-~L~L~~n~l~~~~p~~~~~~-~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 353 (681)
...+.. .......+..+..|+ .+.+... +.++..+... ....++..+.+.++-...........+++|+.+
T Consensus 155 ~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l 231 (329)
T 3sb4_A 155 LGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSL 231 (329)
T ss_dssp TTCTHHHHTSTTTTTSCEEESCCCEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEE
T ss_pred CcchhhhhccccccccccccccccceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEE
Confidence 554221 111233345555665 4444332 1223322211 112245666665542221111111236788888
Q ss_pred eccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcc-eeecccccccccCccccCCCCCccEEEcccCcc
Q 005711 354 FLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLL-ALIVNNNNLSGEIQPELDALDSLKILDISNNQI 432 (681)
Q Consensus 354 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 432 (681)
++++|+++...+..|.++++|+.+++.+| +...-+..|.+|.+|+ .+.+.+ .+....+.+|.++++|+.+++++|.+
T Consensus 232 ~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i 309 (329)
T 3sb4_A 232 DISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKI 309 (329)
T ss_dssp ECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCC
T ss_pred ECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCcc
Confidence 88888888666777888888888888887 6656667788888888 888887 67666677889999999999999999
Q ss_pred eeccccccCCCCCCcEEEC
Q 005711 433 SGEIPLTLAGLKSLEIVDF 451 (681)
Q Consensus 433 ~~~~p~~~~~l~~L~~L~L 451 (681)
+...+..|.++++|+.++.
T Consensus 310 ~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 310 TTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CEECTTTTCTTCCCCEEEC
T ss_pred CccchhhhcCCcchhhhcc
Confidence 8777788999999998864
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=2.1e-15 Score=142.30 Aligned_cols=130 Identities=23% Similarity=0.301 Sum_probs=93.7
Q ss_pred EEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCc
Q 005711 448 IVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPK 527 (681)
Q Consensus 448 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~ 527 (681)
.+++++|.++ .+|..+ .++|++|++++|.++ .+|..+..+++|+.|++++|++++ ..+.
T Consensus 14 ~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~-----------------i~~~ 72 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIST-----------------LSNQ 72 (193)
T ss_dssp EEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCC-----------------CCTT
T ss_pred EEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCE-----------------eCHh
Confidence 4555555544 233322 135566666666655 455555555666655555554442 3445
Q ss_pred ccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcceeeCCC
Q 005711 528 GLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPW 598 (681)
Q Consensus 528 ~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 598 (681)
.|.++++|++|+|++|++++..|. +..+++|+.|+|++|++++..+..|..+++|+.|++++|++.|.++.
T Consensus 73 ~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l 144 (193)
T 2wfh_A 73 SFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM 144 (193)
T ss_dssp TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred HccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence 677889999999999999987777 88999999999999999977777899999999999999999987753
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=2.1e-15 Score=139.14 Aligned_cols=68 Identities=28% Similarity=0.165 Sum_probs=37.0
Q ss_pred CcccccccccceeecCCCcCcccC--CCcCCCCCCCEEECCCCcCcccCC---ccccCCCCCCeEecccCcce
Q 005711 526 PKGLFQLQGLEYLNLSFNFLDGQV--PGLYRLRSLRALDLSHNSLTGQIP---GNISSLQELTLLNLSYNSFS 593 (681)
Q Consensus 526 p~~l~~l~~L~~L~Ls~N~l~~~i--p~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~ls~N~l~ 593 (681)
|..+..+++|++|++++|++++.. +.+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 88 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 88 DMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred HHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 333444555555566665555432 225556666666666666664433 35555666666666666554
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=2.2e-15 Score=138.96 Aligned_cols=134 Identities=23% Similarity=0.176 Sum_probs=93.9
Q ss_pred CcEEEEEcCCCCCc-ccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEee
Q 005711 82 GHVVSINLTDTSLS-GQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELI 160 (681)
Q Consensus 82 ~~v~~L~L~~~~l~-g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 160 (681)
.+++.|+++++.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+.++++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45777777777776 66777777777778888877777765 5677777778888887777766777777777777777
Q ss_pred CCCCCCCCccCCchhccccCCccEEEccCCcCccccC---ccccCCCCCCEEEccCccCcc
Q 005711 161 LKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIP---ESLYYLKSLKHLDLEKNNLTG 218 (681)
Q Consensus 161 L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~L~~n~l~~ 218 (681)
+++|++..-..+..+..+ ++|++|++++|.+++..+ ..+..+++|++|++++|.+..
T Consensus 102 Ls~N~l~~~~~~~~l~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKL-ECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CBSSSCCSSGGGGGGSSC-SCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred ccCCccCcchhHHHHhcC-CCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 777744221222556666 677777777777774433 367777777777777776653
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=1.8e-15 Score=136.58 Aligned_cols=128 Identities=24% Similarity=0.178 Sum_probs=91.4
Q ss_pred CcEEEEEcCCCCCc-ccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEee
Q 005711 82 GHVVSINLTDTSLS-GQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELI 160 (681)
Q Consensus 82 ~~v~~L~L~~~~l~-g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 160 (681)
.+++.|+++++.+. +.+|..+..+++|++|++++|.+++. ..++++++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45777788888777 67777777778888888888877765 5677778888888888887766777777777788888
Q ss_pred CCCCCCCCccCCchhccccCCccEEEccCCcCccccC---ccccCCCCCCEEEcc
Q 005711 161 LKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIP---ESLYYLKSLKHLDLE 212 (681)
Q Consensus 161 L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~L~ 212 (681)
+++|++.....+..+..+ ++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKL-ENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGC-TTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhC-CCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 877743221234566666 677777777777775444 356777777777765
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=2.4e-14 Score=133.24 Aligned_cols=131 Identities=21% Similarity=0.219 Sum_probs=89.0
Q ss_pred cEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccCCCCCcccccCCccccccCC
Q 005711 447 EIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIP 526 (681)
Q Consensus 447 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip 526 (681)
+.+++++|.++. +|..+ .++|++|++++|++++..+..+..+++|+.|++++|++++ ..+
T Consensus 10 ~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------------~~~ 69 (177)
T 2o6r_A 10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS-----------------LPD 69 (177)
T ss_dssp TEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-----------------CCT
T ss_pred CEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE-----------------eCh
Confidence 344455554442 22221 2455555555555554434444555555555555554432 233
Q ss_pred cccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcceeeCC
Q 005711 527 KGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVP 597 (681)
Q Consensus 527 ~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 597 (681)
..+..+++|++|++++|++++..+. +..+++|+.|++++|++++..+..+..+++|++|++++|++.|.+|
T Consensus 70 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 70 GVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 4467788999999999999977776 7889999999999999997777677889999999999999998876
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=1.3e-14 Score=130.84 Aligned_cols=127 Identities=19% Similarity=0.264 Sum_probs=77.9
Q ss_pred CCCCEEeccCCccc-cccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEE
Q 005711 348 KSLQALFLSNNLLI-GEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILD 426 (681)
Q Consensus 348 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 426 (681)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------------------~~~~~l~~L~~L~ 70 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--------------------------ANLPKLNKLKKLE 70 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--------------------------TTCCCCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--------------------------hhhhcCCCCCEEE
Confidence 55666666666665 55666666666666666666666543 2344556666666
Q ss_pred cccCcceeccccccCCCCCCcEEECCCCcCCCc-chhhhhcCCCCCEEEccCCcCcccCC---cccccCCccceeecc
Q 005711 427 ISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGS-LNDAITKWTNLKYFSIARNKLSGNLP---NWLFSFQAIQMMDFS 500 (681)
Q Consensus 427 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~L~ls 500 (681)
+++|.+++.+|..+..+++|++|++++|++++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.||++
T Consensus 71 Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 71 LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 666666655555555566666666666666642 23556666666666666666665443 355666666666654
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.51 E-value=1.7e-13 Score=127.42 Aligned_cols=131 Identities=22% Similarity=0.169 Sum_probs=67.6
Q ss_pred ccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeeccc
Q 005711 326 LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNN 405 (681)
Q Consensus 326 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~ 405 (681)
.+.+++++++++ .+|..+ .++|++|++++|++++..+..+.++++|++|++++|.+++..+..+..+++|+.|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 345566666655 334322 24566666666666655555556666666666666666544333344444444444444
Q ss_pred ccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCc
Q 005711 406 NNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGS 459 (681)
Q Consensus 406 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 459 (681)
|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 444443333344455555555555555543333344455555555555555443
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.50 E-value=1.6e-13 Score=129.30 Aligned_cols=125 Identities=27% Similarity=0.378 Sum_probs=55.5
Q ss_pred EEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeeccccc
Q 005711 328 LLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNN 407 (681)
Q Consensus 328 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~ 407 (681)
.+++++|.++ .+|..+. ++|++|++++|.++ .+|..+.++++|++|++++|.+++..+..|.++++|++|++++|.
T Consensus 14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 4455555544 3343322 34555555555554 334445555555555555555544333333333333333333333
Q ss_pred ccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcC
Q 005711 408 LSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNL 456 (681)
Q Consensus 408 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 456 (681)
+++..+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|.+
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 3333333344444444444444444433333344444444444444444
No 133
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.47 E-value=3.6e-12 Score=134.65 Aligned_cols=329 Identities=12% Similarity=0.034 Sum_probs=168.4
Q ss_pred ccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhcccc
Q 005711 100 PRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFS 179 (681)
Q Consensus 100 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~ 179 (681)
.+|.++++|+++.+.. .++.+-..+|.+|++|+.+++..+ ++.....+|.++++|+.+.+..+ . ...-...+...
T Consensus 65 ~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l-~~i~~~aF~~~- 139 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-L-KSIGVEAFKGC- 139 (394)
T ss_dssp TTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-C-CEECTTTTTTC-
T ss_pred HHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-e-eeecceeeecc-
Confidence 4577788888888874 466555677888888888888754 55455667888888877766544 1 11111122222
Q ss_pred CCccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCC
Q 005711 180 MNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNN 259 (681)
Q Consensus 180 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n 259 (681)
.+....... .....-..+|.++++|+.+.+..+... .....|.++.+|+.+++..+
T Consensus 140 -~~~~~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~~~~----------------------I~~~~F~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 140 -DFKEITIPE-GVTVIGDEAFATCESLEYVSLPDSMET----------------------LHNGLFSGCGKLKSIKLPRN 195 (394)
T ss_dssp -CCSEEECCT-TCCEECTTTTTTCTTCCEEECCTTCCE----------------------ECTTTTTTCTTCCBCCCCTT
T ss_pred -cccccccCc-cccccchhhhcccCCCcEEecCCccce----------------------eccccccCCCCceEEEcCCC
Confidence 111111111 111122234555555555554332110 11223334444444444332
Q ss_pred ccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCC
Q 005711 260 SVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGE 339 (681)
Q Consensus 260 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~ 339 (681)
++...... +..+..|+.+.+..+... +....... .+|+.+.+.... +..
T Consensus 196 -~~~I~~~~------------------------F~~~~~L~~i~~~~~~~~--i~~~~~~~---~~l~~i~ip~~~-~~i 244 (394)
T 4fs7_A 196 -LKIIRDYC------------------------FAECILLENMEFPNSLYY--LGDFALSK---TGVKNIIIPDSF-TEL 244 (394)
T ss_dssp -CCEECTTT------------------------TTTCTTCCBCCCCTTCCE--ECTTTTTT---CCCCEEEECTTC-CEE
T ss_pred -ceEeCchh------------------------hccccccceeecCCCceE--eehhhccc---CCCceEEECCCc-eec
Confidence 22122223 333444444433332211 01111111 145555444321 212
Q ss_pred CcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCC
Q 005711 340 IPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDAL 419 (681)
Q Consensus 340 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 419 (681)
-...+..+..++.+.+..+... .....|.++..++.+....+.+ ....+..+.+|+.+.+..+ +...-..+|.++
T Consensus 245 ~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c 319 (394)
T 4fs7_A 245 GKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESC 319 (394)
T ss_dssp CSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTC
T ss_pred ccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCC
Confidence 2234555666666666555332 3344556666666666554432 2234556666666666543 333344556777
Q ss_pred CCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCcccee
Q 005711 420 DSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMM 497 (681)
Q Consensus 420 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 497 (681)
.+|+.+++.++ ++..-..+|.+|.+|+.+++..+ ++..-..+|.+|++|+.+++..+- . .+...+.++++|+.+
T Consensus 320 ~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 320 TSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRL-E-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEEE
T ss_pred CCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCC-E-EhhheecCCCCCcEE
Confidence 77777777643 55444567777888888887765 554445677778888888776542 2 233456666666543
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.46 E-value=4.3e-16 Score=147.96 Aligned_cols=150 Identities=24% Similarity=0.309 Sum_probs=101.1
Q ss_pred CCccEEEcccCcceecccc------ccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCc
Q 005711 420 DSLKILDISNNQISGEIPL------TLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQA 493 (681)
Q Consensus 420 ~~L~~L~Ls~n~l~~~~p~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 493 (681)
..++.++++.+.+.+.+|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~ 94 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT 94 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence 3444444444444444443 66667777777777777765 45 6667777777777777776 56666666667
Q ss_pred cceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCC--CcCCCCCCCEEECCCCcCccc
Q 005711 494 IQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVP--GLYRLRSLRALDLSHNSLTGQ 571 (681)
Q Consensus 494 L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip--~~~~l~~L~~L~Ls~N~l~~~ 571 (681)
|+.|++++|+++ .+| .+..+++|++|++++|++++..+ .+..+++|+.|++++|.+++.
T Consensus 95 L~~L~L~~N~l~------------------~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 95 LEELWISYNQIA------------------SLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp CSEEEEEEEECC------------------CHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CCEEECcCCcCC------------------cCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 777766666554 233 46678888888888888875433 377788888888888888877
Q ss_pred CCcc----------ccCCCCCCeEecccCcce
Q 005711 572 IPGN----------ISSLQELTLLNLSYNSFS 593 (681)
Q Consensus 572 ~p~~----------l~~l~~L~~L~ls~N~l~ 593 (681)
+|.. +..+++|+.|| +|+++
T Consensus 156 ~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 156 YKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred cccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 6653 67788888876 55553
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.45 E-value=3e-12 Score=134.75 Aligned_cols=245 Identities=11% Similarity=0.077 Sum_probs=149.5
Q ss_pred hhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhccc
Q 005711 243 CFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTE 322 (681)
Q Consensus 243 ~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~ 322 (681)
.+|.++ +|+.+.+..+ ++.....+|.+ .+|+.+.+.. .++......|..+++|+.+++..|.++..-...|. ..
T Consensus 130 ~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~- 203 (401)
T 4fdw_A 130 DAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YA- 203 (401)
T ss_dssp TTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TC-
T ss_pred hhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ec-
Confidence 344443 5666666554 44344445555 3577777664 44444455666777777777777766632222332 22
Q ss_pred CCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceee
Q 005711 323 KAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALI 402 (681)
Q Consensus 323 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ 402 (681)
+|+.+.+.++ ++..-...|..+++|+.+++.++ ++.....+|.+ .+|+.+++. +.++..-...|.+|.+|+.+.
T Consensus 204 --~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~ 277 (401)
T 4fdw_A 204 --GIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVT 277 (401)
T ss_dssp --CCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEE
T ss_pred --ccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEE
Confidence 6777777644 55445566777777888887764 44444455655 677777774 445545566777777777777
Q ss_pred ccccccc-----ccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccC
Q 005711 403 VNNNNLS-----GEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIAR 477 (681)
Q Consensus 403 l~~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 477 (681)
+.++.+. ......|.++++|+.+++.+ .++......|.+|++|+.+++.++ ++..-..+|.++ +|+.+++.+
T Consensus 278 l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~ 354 (401)
T 4fdw_A 278 TYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEG 354 (401)
T ss_dssp EESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECC
T ss_pred eCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcC
Confidence 7766554 23445677777788887774 465555667777788888877554 554455667777 788888877
Q ss_pred CcCcccCCcccccC-CccceeecccC
Q 005711 478 NKLSGNLPNWLFSF-QAIQMMDFSTN 502 (681)
Q Consensus 478 n~l~~~~p~~~~~l-~~L~~L~ls~n 502 (681)
|......+..+..+ ..++.+.+..+
T Consensus 355 n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 355 TTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp SSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred CCCcccccccccCCCCCccEEEeCHH
Confidence 76654334444444 24555555443
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.44 E-value=5.3e-12 Score=132.90 Aligned_cols=205 Identities=11% Similarity=0.057 Sum_probs=104.5
Q ss_pred cchhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhc
Q 005711 241 LPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQT 320 (681)
Q Consensus 241 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~ 320 (681)
-+..|.++++|+.+++..|+++......|. ..+|+.+.+..+ ++......|..+++|+.+++..+ +
T Consensus 172 ~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l----------- 237 (401)
T 4fdw_A 172 KEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-V----------- 237 (401)
T ss_dssp CSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-C-----------
T ss_pred hHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-c-----------
Confidence 334555556666666655555543333333 355555555532 33333444555555555555442 2
Q ss_pred ccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCc-----cccCcccccC
Q 005711 321 TEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLS-----GSIPLNIVGC 395 (681)
Q Consensus 321 ~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-----~~~p~~~~~~ 395 (681)
+..-..+|.. .+|+.+.+.+ .++......|.++++|+.+++.+|.+. ...+..|.+|
T Consensus 238 ----------------~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c 299 (401)
T 4fdw_A 238 ----------------STIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGC 299 (401)
T ss_dssp ----------------CEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTC
T ss_pred ----------------cCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCC
Confidence 2112222333 3444444422 233333344555555555555444432 2333455555
Q ss_pred CCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCC-CCCEEE
Q 005711 396 FQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWT-NLKYFS 474 (681)
Q Consensus 396 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~ 474 (681)
++|+.+.+.+ .+...-..+|.++.+|+.+++..+ ++..-...|.++ +|+.+++.+|.+....+..|..++ +++.|.
T Consensus 300 ~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~ 376 (401)
T 4fdw_A 300 PKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIR 376 (401)
T ss_dssp TTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEE
T ss_pred ccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEE
Confidence 5666665552 344444455666667777777543 444445666777 777777777766544445555553 566777
Q ss_pred ccCCcC
Q 005711 475 IARNKL 480 (681)
Q Consensus 475 L~~n~l 480 (681)
+..+.+
T Consensus 377 vp~~~~ 382 (401)
T 4fdw_A 377 VPAESV 382 (401)
T ss_dssp ECGGGH
T ss_pred eCHHHH
Confidence 666554
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.43 E-value=2e-13 Score=126.70 Aligned_cols=132 Identities=15% Similarity=0.138 Sum_probs=83.9
Q ss_pred CCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccCCCCCcccccCCcc
Q 005711 441 AGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNL 520 (681)
Q Consensus 441 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~ 520 (681)
..+++|++|++++|.++. ++......++|++|++++|.+++. ..+..+++|+.|++++|+++
T Consensus 16 ~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~--------------- 77 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC--------------- 77 (176)
T ss_dssp ECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC---------------
T ss_pred CCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc---------------
Confidence 445556666666666552 233222233666666666666543 34555555555555555443
Q ss_pred ccccCCcc-cccccccceeecCCCcCcccCC--CcCCCCCCCEEECCCCcCcccCCcc----ccCCCCCCeEecccCcce
Q 005711 521 LHGTIPKG-LFQLQGLEYLNLSFNFLDGQVP--GLYRLRSLRALDLSHNSLTGQIPGN----ISSLQELTLLNLSYNSFS 593 (681)
Q Consensus 521 l~g~ip~~-l~~l~~L~~L~Ls~N~l~~~ip--~~~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~ls~N~l~ 593 (681)
.+|+. +..+++|++|++++|+++...+ .+..+++|+.|++++|.++ .+|.. +..+++|+.||+++|...
T Consensus 78 ---~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 78 ---RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ---EECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ---ccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 23333 4677888888888888864333 3677888888888888887 45654 788889999999888765
Q ss_pred e
Q 005711 594 G 594 (681)
Q Consensus 594 ~ 594 (681)
.
T Consensus 154 ~ 154 (176)
T 1a9n_A 154 E 154 (176)
T ss_dssp H
T ss_pred H
Confidence 3
No 138
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.43 E-value=8.5e-12 Score=131.76 Aligned_cols=318 Identities=11% Similarity=-0.009 Sum_probs=198.4
Q ss_pred CCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCcCccccC
Q 005711 118 FTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIP 197 (681)
Q Consensus 118 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p 197 (681)
++.+-..+|.++++|+.+++..+ ++.+...+|.++++|+.+++..+ . +..-.
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l--------------------------~~I~~ 110 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-V--------------------------KMIGR 110 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-C--------------------------CEECT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-c--------------------------eEccc
Confidence 34344567888888888888743 66555667888888888877654 1 11112
Q ss_pred ccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcccE
Q 005711 198 ESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTH 277 (681)
Q Consensus 198 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (681)
.+|.++.+|+.+.+..+ +.... ..+|..+..++....... .......|.++++|+.
T Consensus 111 ~aF~~c~~L~~i~~p~~-l~~i~---------------------~~aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~ 166 (394)
T 4fs7_A 111 CTFSGCYALKSILLPLM-LKSIG---------------------VEAFKGCDFKEITIPEGV--TVIGDEAFATCESLEY 166 (394)
T ss_dssp TTTTTCTTCCCCCCCTT-CCEEC---------------------TTTTTTCCCSEEECCTTC--CEECTTTTTTCTTCCE
T ss_pred hhhcccccchhhcccCc-eeeec---------------------ceeeecccccccccCccc--cccchhhhcccCCCcE
Confidence 33455555555444322 11111 111222211111111111 1112234556666666
Q ss_pred EecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccC
Q 005711 278 LNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSN 357 (681)
Q Consensus 278 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 357 (681)
+.+.++. .......|..+.+|+.+++..+ ++......+.... .|+.+.+..+... +........+|+.+.+.+
T Consensus 167 i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~---~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~ 239 (394)
T 4fs7_A 167 VSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECI---LLENMEFPNSLYY--LGDFALSKTGVKNIIIPD 239 (394)
T ss_dssp EECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCT---TCCBCCCCTTCCE--ECTTTTTTCCCCEEEECT
T ss_pred EecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhcccc---ccceeecCCCceE--eehhhcccCCCceEEECC
Confidence 6665442 2233445666777777777655 2212222343333 6777777665443 223344567899998876
Q ss_pred CccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccc
Q 005711 358 NLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIP 437 (681)
Q Consensus 358 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 437 (681)
.. +......+.++..++.+.+..+... .....+..+..++.+....+.+. ...|..+.+|+.+.+.++ +...-.
T Consensus 240 ~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~ 313 (394)
T 4fs7_A 240 SF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGE 313 (394)
T ss_dssp TC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECT
T ss_pred Cc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccccc-cceech
Confidence 53 3344567888999999999877543 55667888889998887765432 345778999999999865 554556
Q ss_pred cccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccC
Q 005711 438 LTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTN 502 (681)
Q Consensus 438 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 502 (681)
..|.+|.+|+.+++.++ ++..-..+|.++++|+.+++..+ ++..-...+.++.+|+.+++..+
T Consensus 314 ~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 314 EAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred hhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 78999999999999755 66555678999999999999876 55444567889999999998765
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.41 E-value=5.1e-13 Score=124.02 Aligned_cols=58 Identities=17% Similarity=0.197 Sum_probs=25.6
Q ss_pred CccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcC
Q 005711 421 SLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKL 480 (681)
Q Consensus 421 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 480 (681)
+|+.|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i 100 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCC
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcC
Confidence 444444444444432 3344444444444444444433223334444444444444444
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.41 E-value=7.4e-13 Score=121.98 Aligned_cols=84 Identities=27% Similarity=0.288 Sum_probs=70.7
Q ss_pred cccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcc
Q 005711 514 MDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSF 592 (681)
Q Consensus 514 L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 592 (681)
|+|++|++++..|..+..+++|++|+|++|++++..+. +..+++|+.|+|++|++++..+..|..+++|++|++++|++
T Consensus 35 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 33444444445577788899999999999999977776 78899999999999999988777899999999999999999
Q ss_pred eeeCC
Q 005711 593 SGFVP 597 (681)
Q Consensus 593 ~~~~p 597 (681)
.|.++
T Consensus 115 ~c~c~ 119 (170)
T 3g39_A 115 DCACS 119 (170)
T ss_dssp CTTBG
T ss_pred CCCch
Confidence 98876
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.40 E-value=3.4e-15 Score=141.71 Aligned_cols=128 Identities=25% Similarity=0.326 Sum_probs=64.8
Q ss_pred CccEEEccCCCCcCCCcc------cccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCc
Q 005711 325 GLVLLDLSHNRFSGEIPL------KITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQL 398 (681)
Q Consensus 325 ~L~~L~Ls~n~l~~~~p~------~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L 398 (681)
.++.++++.+.++|.+|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 566666666666665554 55566666666666666654 44 5555666666666666655 344444444444
Q ss_pred ceeecccccccccCccccCCCCCccEEEcccCcceeccc-cccCCCCCCcEEECCCCcCC
Q 005711 399 LALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIP-LTLAGLKSLEIVDFSSNNLS 457 (681)
Q Consensus 399 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~ 457 (681)
+.|++++|.+++ +| .+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 444444444443 12 23344444444444444442211 23344444444444444443
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.37 E-value=1.9e-12 Score=119.70 Aligned_cols=107 Identities=22% Similarity=0.243 Sum_probs=80.0
Q ss_pred CEEEccCCcCcccCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCC
Q 005711 471 KYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVP 550 (681)
Q Consensus 471 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip 550 (681)
+.+++++|.+. .+|..+. ++|+.|++++| ++++..|..+.++++|++|+|++|++++..+
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N-----------------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~ 74 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNN-----------------QITKLEPGVFDHLVNLQQLYFNSNKLTAIPT 74 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSS-----------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCC-----------------CccccCHHHhcCCcCCCEEECCCCCCCccCh
Confidence 45566666554 4444332 44444444444 4444556778889999999999999997666
Q ss_pred C-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcceeeCC
Q 005711 551 G-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVP 597 (681)
Q Consensus 551 ~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 597 (681)
. +..+++|+.|+|++|++++..+..|..+++|++|++++|++.+.++
T Consensus 75 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 75 GVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred hHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 6 6789999999999999997777679999999999999999988765
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.33 E-value=8.6e-12 Score=114.80 Aligned_cols=104 Identities=26% Similarity=0.275 Sum_probs=62.9
Q ss_pred EEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCC
Q 005711 86 SINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNP 165 (681)
Q Consensus 86 ~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 165 (681)
.++++++.+.. +|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|++++|
T Consensus 13 ~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N- 88 (170)
T 3g39_A 13 TVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN- 88 (170)
T ss_dssp EEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred EEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-
Confidence 35555666553 444442 66777777777777666667777777777777777777555555566665555555555
Q ss_pred CCCccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCcc
Q 005711 166 ELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTG 218 (681)
Q Consensus 166 ~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 218 (681)
.+++..+..|.++++|++|++++|.++.
T Consensus 89 -------------------------~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 89 -------------------------QLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp -------------------------CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred -------------------------ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 4443333445555666666666655543
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.29 E-value=1.7e-11 Score=113.15 Aligned_cols=77 Identities=25% Similarity=0.263 Sum_probs=51.3
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCC
Q 005711 85 VSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164 (681)
Q Consensus 85 ~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 164 (681)
+.++++++.+. .+|..+. ++|++|+|++|.+++..|..|+++++|++|+|++|++++..+..|.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 35677777763 4555554 67777777777777776777777777777777777777554445566666666666555
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.26 E-value=1.2e-09 Score=115.11 Aligned_cols=108 Identities=16% Similarity=0.161 Sum_probs=64.5
Q ss_pred cccCCC-CCCEEECCCCcCCccccccccCCCCCCEEEccCCC---CCCcCCccccCCCCCCEeeCCCCCCCCccCCchhc
Q 005711 101 RLCKLS-FLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNK---FVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVG 176 (681)
Q Consensus 101 ~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~ 176 (681)
+|.++. .|+.+.+.. .++.+-..+|.+|++|+.+.++.|. ++.+...+|.++.+|+.+.+..+ . ...-...+.
T Consensus 58 aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~-~~I~~~aF~ 134 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-V-TEIDSEAFH 134 (394)
T ss_dssp TTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-C-SEECTTTTT
T ss_pred hccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-c-ceehhhhhh
Confidence 455663 588888875 3665667788888888888887653 55455567888888887776554 1 111122233
Q ss_pred cccCCccEEEccCCcCccccCccccCCCCCCEEEccC
Q 005711 177 NFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEK 213 (681)
Q Consensus 177 ~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 213 (681)
.. .+|+.+.+..+ +...-...|.++.+|+.+.+..
T Consensus 135 ~c-~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 135 HC-EELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp TC-TTCCEEECCTT-CCEECTTTTTTCTTCCEEECCT
T ss_pred hh-cccccccccce-eeeecccceecccccccccccc
Confidence 33 56666666433 2223334455566666665543
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.24 E-value=4.9e-13 Score=139.37 Aligned_cols=38 Identities=24% Similarity=0.198 Sum_probs=17.6
Q ss_pred CCCCEEECCCCcCCcccccccc-----CCCCCCEEEccCCCCC
Q 005711 106 SFLEFLVLSSNAFTGRISTCFG-----GLSGLKTLDLSYNKFV 143 (681)
Q Consensus 106 ~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l~ 143 (681)
++|++|+|++|.++......+. ..++|++|+|++|.++
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~ 114 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD 114 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCC
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCC
Confidence 3455566665555543222221 1245555555555544
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.19 E-value=2.2e-09 Score=113.12 Aligned_cols=332 Identities=12% Similarity=0.104 Sum_probs=155.4
Q ss_pred cccccccCCC-CCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCC--CCCccCCchhccccCCccEEEccCCcCccccC
Q 005711 121 RISTCFGGLS-GLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNP--ELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIP 197 (681)
Q Consensus 121 ~~~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~--~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p 197 (681)
+-..+|.+++ .|+.+.+..+ ++.+...+|.++++|+.+.+..|. .+...-...+..+ .+|+.+.+..+ ++..-.
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c-~~L~~i~~~~~-~~~I~~ 130 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFC-SELTDIPILDS-VTEIDS 130 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTC-TTCCBCGGGTT-CSEECT
T ss_pred cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhc-ccceeeccCCc-cceehh
Confidence 3456788885 5999999764 666677889999999999887661 0111111223333 44554444332 222223
Q ss_pred ccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcccE
Q 005711 198 ESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTH 277 (681)
Q Consensus 198 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (681)
.+|.++.+|+.+.+..+. .......+..+..|+.+.+..+ ++..-...|.. .+|+.
T Consensus 131 ~aF~~c~~L~~i~lp~~~----------------------~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~ 186 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPEGV----------------------TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQ 186 (394)
T ss_dssp TTTTTCTTCCEEECCTTC----------------------CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSE
T ss_pred hhhhhhccccccccccee----------------------eeecccceecccccccccccce-eeEeccccccc-cceeE
Confidence 345555666665554321 1122334455555555555443 22122222322 34555
Q ss_pred EecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccC
Q 005711 278 LNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSN 357 (681)
Q Consensus 278 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 357 (681)
+.+..+-. ......+..+..+.......+.... +...+.... .........+.....+..+.+.+
T Consensus 187 i~ip~~~~-~i~~~af~~c~~l~~~~~~~~~~~~-~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~ip~ 251 (394)
T 4gt6_A 187 IHIPAKVT-RIGTNAFSECFALSTITSDSESYPA-IDNVLYEKS-------------ANGDYALIRYPSQREDPAFKIPN 251 (394)
T ss_dssp EEECTTCC-EECTTTTTTCTTCCEEEECCSSSCB-SSSCEEEEC-------------TTSCEEEEECCTTCCCSEEECCT
T ss_pred EEECCccc-ccccchhhhccccceeccccccccc-ccceeeccc-------------ccccccccccccccccceEEcCC
Confidence 55543321 1223334445555554444332221 000000000 00000000011122233333322
Q ss_pred CccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccc
Q 005711 358 NLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIP 437 (681)
Q Consensus 358 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 437 (681)
. ++.....+|.+++.|+.+.+.++... .....|.++..|+.+.+. +.+.......|.++.+|+.+++..+ ++..-.
T Consensus 252 ~-v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~ 327 (394)
T 4gt6_A 252 G-VARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILD 327 (394)
T ss_dssp T-EEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECT
T ss_pred c-ceEcccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehH
Confidence 1 22223344555556666655543322 333445555566666554 2333333445666677777777653 443445
Q ss_pred cccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccC
Q 005711 438 LTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTN 502 (681)
Q Consensus 438 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 502 (681)
..|.+|.+|+.+.+..+ ++..-..+|.+|++|+.+++.++.... ..+..+.+|+.+.+..+
T Consensus 328 ~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 328 DAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC--------
T ss_pred hHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCC
Confidence 66777777777777544 443445667777777777777665331 23445566666655444
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.19 E-value=8e-11 Score=122.05 Aligned_cols=109 Identities=24% Similarity=0.255 Sum_probs=83.4
Q ss_pred CC--CCCCceeecCCCCcEEEEEcCCC-CCcccccccccCCCCCCEEECCC-CcCCccccccccCCCCCCEEEccCCCCC
Q 005711 68 NC--TNWTGVACNFQTGHVVSINLTDT-SLSGQVHPRLCKLSFLEFLVLSS-NAFTGRISTCFGGLSGLKTLDLSYNKFV 143 (681)
Q Consensus 68 ~c--c~w~gv~c~~~~~~v~~L~L~~~-~l~g~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 143 (681)
.| |.|..|.|+ ++ ++.+ +|. +..+++|++|+|++ |.+++..+..|+++++|++|+|++|+|+
T Consensus 4 ~c~~C~~~~v~~~------------~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 69 (347)
T 2ifg_A 4 ACCPHGSSGLRCT------------RDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69 (347)
T ss_dssp SSCCSSSSCEECC------------SSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC
T ss_pred cCccccCCEEEcC------------CCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc
Confidence 46 778777775 23 4543 677 99999999999996 9999888889999999999999999999
Q ss_pred CcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCcCc
Q 005711 144 GVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFC 193 (681)
Q Consensus 144 ~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~ 193 (681)
+..|..|.++++|++|+|++|+ +.+..+..+..+ .|++|++++|.+.
T Consensus 70 ~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~--~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 70 FVAPDAFHFTPRLSRLNLSFNA-LESLSWKTVQGL--SLQELVLSGNPLH 116 (347)
T ss_dssp EECTTGGGSCSCCCEEECCSSC-CSCCCSTTTCSC--CCCEEECCSSCCC
T ss_pred eeCHHHhcCCcCCCEEeCCCCc-cceeCHHHcccC--CceEEEeeCCCcc
Confidence 9888899999999999998884 333333333333 3666666666665
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.16 E-value=1.4e-12 Score=135.93 Aligned_cols=170 Identities=16% Similarity=0.134 Sum_probs=90.0
Q ss_pred CCCCcEEeccCCCccCCCChhhhhc-c-cCCCccEEEccCCCCcCCCcccc-cCCCCCCEEeccCCcccccccccc----
Q 005711 296 FEKLLLLDLSFNDLSGPLPSKIAQT-T-EKAGLVLLDLSHNRFSGEIPLKI-TELKSLQALFLSNNLLIGEIPARI---- 368 (681)
Q Consensus 296 l~~L~~L~L~~n~l~~~~p~~~~~~-~-~~~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~~~~l---- 368 (681)
.+.|+.|++++|.++......+... . ..++|+.|++++|.+++.....+ ..+++|++|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3567777777777654333333322 1 11366677777776653322222 223456666666666654332222
Q ss_pred -CCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceec----cccccCCC
Q 005711 369 -GNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGE----IPLTLAGL 443 (681)
Q Consensus 369 -~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l 443 (681)
...++|++|++++|.++..... .++..+..+++|++|+|++|.+.+. ++..+..+
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~--------------------~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~ 210 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVA--------------------VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN 210 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHH--------------------HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGC
T ss_pred HhcCCccceeeCCCCCCChHHHH--------------------HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcC
Confidence 2345566666666655431111 1122234455666666666666543 23445556
Q ss_pred CCCcEEECCCCcCCCc----chhhhhcCCCCCEEEccCCcCcccCC
Q 005711 444 KSLEIVDFSSNNLSGS----LNDAITKWTNLKYFSIARNKLSGNLP 485 (681)
Q Consensus 444 ~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~p 485 (681)
++|++|+|++|.++.. +...+...++|++|+|++|.+++...
T Consensus 211 ~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~ 256 (372)
T 3un9_A 211 RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGR 256 (372)
T ss_dssp SCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHH
T ss_pred CCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHH
Confidence 6777777777777642 33344456677777777777664433
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.13 E-value=9.8e-11 Score=121.39 Aligned_cols=69 Identities=26% Similarity=0.173 Sum_probs=34.2
Q ss_pred cccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcceeeC
Q 005711 527 KGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFV 596 (681)
Q Consensus 527 ~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ 596 (681)
..|.++++|+.|+|++|+|++.+|. |.++++|+.|||++|+|++..|..+..++ |+.|++++|++.|.+
T Consensus 50 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c 119 (347)
T 2ifg_A 50 RDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCSC 119 (347)
T ss_dssp GGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCG
T ss_pred hHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCCC
Confidence 3344455555555555555544444 44555555555555555544444444333 555555555555443
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.82 E-value=5.7e-07 Score=94.07 Aligned_cols=108 Identities=15% Similarity=0.112 Sum_probs=53.9
Q ss_pred ccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCC
Q 005711 367 RIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSL 446 (681)
Q Consensus 367 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 446 (681)
.+.++..|+.+.+..+ ++..-...+.++.+|+.+.+..+ +.......|.++.+|+.+.+.++.++..-...|.+|.+|
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 3444445555554433 22223334444455555544322 222223345556666666666555554445556666666
Q ss_pred cEEECCCCcCCCcchhhhhcCCCCCEEEccC
Q 005711 447 EIVDFSSNNLSGSLNDAITKWTNLKYFSIAR 477 (681)
Q Consensus 447 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 477 (681)
+.+++.++ ++..-..+|.+|++|+.+.+..
T Consensus 313 ~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 313 SSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred CEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 66666543 3333345566666666665543
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.79 E-value=2.8e-09 Score=109.96 Aligned_cols=63 Identities=17% Similarity=0.202 Sum_probs=34.0
Q ss_pred CCCCCEEEccCCccccCCChhhc---ccCcccEEecCCCccccc----cCccccCCCCCcEEeccCCCcc
Q 005711 248 AMSLTVLKLDNNSVVGGIPTCIA---SLQALTHLNLSHNHLNYE----ISPRLVFFEKLLLLDLSFNDLS 310 (681)
Q Consensus 248 ~~~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~ 310 (681)
+++|++|++.+|.+....+..+. .+++|++|+|+.|.+++. ++..+..+++|+.|+++.|.++
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 45566666655555432222222 355666666666666543 2223344566777777776655
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.74 E-value=1.8e-06 Score=90.16 Aligned_cols=39 Identities=3% Similarity=0.098 Sum_probs=28.1
Q ss_pred cccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCC
Q 005711 125 CFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164 (681)
Q Consensus 125 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 164 (681)
.+....+|+.+.+.. .++.+...+|.++.+|+.+++..+
T Consensus 41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~ 79 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST 79 (379)
T ss_dssp TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT
T ss_pred ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc
Confidence 355667888888865 466555677888888888888654
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.70 E-value=1.9e-08 Score=103.72 Aligned_cols=138 Identities=21% Similarity=0.261 Sum_probs=75.2
Q ss_pred cccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccc--cCCCcceeeccc--cccccc-----Cc
Q 005711 343 KITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIV--GCFQLLALIVNN--NNLSGE-----IQ 413 (681)
Q Consensus 343 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~--~~~~L~~L~l~~--n~l~~~-----~~ 413 (681)
.+..+|+|+.|.+++|.-. .++. +. +++|++|++..+.+.......+. .+++|+.|+++. +...+. +.
T Consensus 167 ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 3444555666666554211 1222 22 45566666655554433222222 455566655532 111111 01
Q ss_pred ccc--CCCCCccEEEcccCcceecccccc---CCCCCCcEEECCCCcCCCc----chhhhhcCCCCCEEEccCCcCccc
Q 005711 414 PEL--DALDSLKILDISNNQISGEIPLTL---AGLKSLEIVDFSSNNLSGS----LNDAITKWTNLKYFSIARNKLSGN 483 (681)
Q Consensus 414 ~~~--~~l~~L~~L~Ls~n~l~~~~p~~~---~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~ 483 (681)
..+ ..+++|+.|++.+|.+.+..+..+ ..+++|++|+|+.|.+.+. ++..+.++++|+.|++++|.++..
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 112 246788888888888765433322 2467888888888888754 333345678888888888877643
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.62 E-value=1.7e-09 Score=105.71 Aligned_cols=80 Identities=26% Similarity=0.300 Sum_probs=50.6
Q ss_pred cCCCCCCEEEccCCCCCC--cCCccccCCCCCCEeeCCCCCCCCccCCchhccccC--CccEEEccCCcCccccCc----
Q 005711 127 GGLSGLKTLDLSYNKFVG--VVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSM--NLEKLDFSFNSFCGEIPE---- 198 (681)
Q Consensus 127 ~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~--~L~~L~L~~n~l~~~~p~---- 198 (681)
.++++|++|+|++|++++ .+|..+..+++|++|+|++|.+ .+. ..+..+ . +|++|+|++|.+++.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i-~~~--~~l~~l-~~l~L~~L~L~~Npl~~~~~~~~~y 242 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL-KSE--RELDKI-KGLKLEELWLDGNSLCDTFRDQSTY 242 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCC-CSG--GGGGGG-TTSCCSEEECTTSTTGGGCSSHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCcc-CCc--hhhhhc-ccCCcceEEccCCcCccccCcchhH
Confidence 457778888888888776 4456666777777777777743 222 223333 3 677777777777665542
Q ss_pred ---cccCCCCCCEEE
Q 005711 199 ---SLYYLKSLKHLD 210 (681)
Q Consensus 199 ---~l~~l~~L~~L~ 210 (681)
.+..+++|+.||
T Consensus 243 ~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 243 ISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHCTTCCEES
T ss_pred HHHHHHHCcccCeEC
Confidence 245566666664
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.43 E-value=3.7e-08 Score=91.59 Aligned_cols=118 Identities=11% Similarity=0.024 Sum_probs=68.1
Q ss_pred ccccccCCCCCCEEECCCC-cCCcc----ccccccCCCCCCEEEccCCCCCCc----CCccccCCCCCCEeeCCCCCCCC
Q 005711 98 VHPRLCKLSFLEFLVLSSN-AFTGR----ISTCFGGLSGLKTLDLSYNKFVGV----VPDAIMKLRNLRELILKGNPELG 168 (681)
Q Consensus 98 ~~~~l~~l~~L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~~~~ 168 (681)
+...+...+.|++|+|++| .+... +...+...+.|++|+|++|.+... +...+...++|++|+|++|.+ +
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i-~ 106 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI-S 106 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC-C
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC-C
Confidence 3345566778888888887 77643 445566677888888888877643 223344556677777776632 2
Q ss_pred cc----CCchhccccCCccEEEc--cCCcCccc----cCccccCCCCCCEEEccCccCc
Q 005711 169 GV----FPGWVGNFSMNLEKLDF--SFNSFCGE----IPESLYYLKSLKHLDLEKNNLT 217 (681)
Q Consensus 169 ~~----~p~~l~~l~~~L~~L~L--~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~ 217 (681)
.. +...+... ++|++|++ ++|.+... +.+.+...++|++|++++|.+.
T Consensus 107 ~~g~~~l~~~L~~n-~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 107 GSGILALVEALQSN-TSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHGGGGC-SSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHHhC-CCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 11 22233333 45666666 55665532 2233444556666666665553
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.22 E-value=3.5e-07 Score=84.90 Aligned_cols=120 Identities=18% Similarity=0.193 Sum_probs=64.9
Q ss_pred ccccCCCCCCEEeccCC-ccccc----cccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCcccc
Q 005711 342 LKITELKSLQALFLSNN-LLIGE----IPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPEL 416 (681)
Q Consensus 342 ~~l~~l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~ 416 (681)
..+...+.|++|+|++| .+... +...+...++|++|+|++|.+.......+ ...+
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l--------------------~~~L 89 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFAL--------------------AEML 89 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHH--------------------HHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHH--------------------HHHH
Confidence 34455666777777766 55432 23334455666666666666543221111 1122
Q ss_pred CCCCCccEEEcccCcceec----cccccCCCCCCcEEEC--CCCcCCCc----chhhhhcCCCCCEEEccCCcCc
Q 005711 417 DALDSLKILDISNNQISGE----IPLTLAGLKSLEIVDF--SSNNLSGS----LNDAITKWTNLKYFSIARNKLS 481 (681)
Q Consensus 417 ~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L--~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~ 481 (681)
...++|+.|+|++|.+.+. +...+...++|++|+| ++|.+... +...+...++|++|++++|.+.
T Consensus 90 ~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 90 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3345566666666666543 2344555666777777 66666533 2334445566777777766654
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.14 E-value=6.4e-07 Score=87.51 Aligned_cols=66 Identities=27% Similarity=0.292 Sum_probs=49.4
Q ss_pred ccccccceeecCCCcCcc--cCCC-cCCCCCCCEEECCCCcCcccCCccccCCC--CCCeEecccCcceeeCC
Q 005711 530 FQLQGLEYLNLSFNFLDG--QVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQ--ELTLLNLSYNSFSGFVP 597 (681)
Q Consensus 530 ~~l~~L~~L~Ls~N~l~~--~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~ls~N~l~~~~p 597 (681)
.++++|+.|+|++|++++ .+|. +..+++|+.|+|++|++++. ..+..+. .|++|++++|++++.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 457788888888888886 3455 56788888888888888865 3344444 88888888888887665
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.88 E-value=4.2e-06 Score=75.68 Aligned_cols=35 Identities=14% Similarity=0.053 Sum_probs=20.5
Q ss_pred CccEEEccCCc-CccccCccccCCCCCCEEEccCcc
Q 005711 181 NLEKLDFSFNS-FCGEIPESLYYLKSLKHLDLEKNN 215 (681)
Q Consensus 181 ~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~ 215 (681)
+|++|++++|. ++..--..+..+++|++|+++++.
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence 46666666654 543333345666777777777654
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.68 E-value=2.1e-05 Score=71.12 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=13.6
Q ss_pred CCcEEECCCCc-CCCcchhhhhcCCCCCEEEccCC
Q 005711 445 SLEIVDFSSNN-LSGSLNDAITKWTNLKYFSIARN 478 (681)
Q Consensus 445 ~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n 478 (681)
+|++|++++|. ++...-..+..+++|++|+++++
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL 149 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence 34444444442 33222223334444444444443
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.04 E-value=0.001 Score=57.10 Aligned_cols=60 Identities=22% Similarity=0.232 Sum_probs=47.8
Q ss_pred ceeecCCCcCc-ccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcceeeCC
Q 005711 536 EYLNLSFNFLD-GQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVP 597 (681)
Q Consensus 536 ~~L~Ls~N~l~-~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 597 (681)
..++-+++.++ ..+|. + .++|+.|+|++|+|+...+..|..+++|+.|+|++|++.|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 36777888776 34554 3 2578999999999997777788999999999999999988764
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.59 E-value=0.0012 Score=60.73 Aligned_cols=39 Identities=10% Similarity=0.232 Sum_probs=19.5
Q ss_pred CCccEEEccCC-cCcc----ccCccccCCCCCCEEEccCccCcc
Q 005711 180 MNLEKLDFSFN-SFCG----EIPESLYYLKSLKHLDLEKNNLTG 218 (681)
Q Consensus 180 ~~L~~L~L~~n-~l~~----~~p~~l~~l~~L~~L~L~~n~l~~ 218 (681)
+.|++|+|++| .+.. .+.+.+...+.|+.|+|++|.+.+
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd 84 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISD 84 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCCh
Confidence 34555555543 3331 233344555566666666666553
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.57 E-value=0.0016 Score=59.83 Aligned_cols=116 Identities=16% Similarity=0.161 Sum_probs=62.7
Q ss_pred cCCCCCCEEeccCC-ccccc----cccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCC
Q 005711 345 TELKSLQALFLSNN-LLIGE----IPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDAL 419 (681)
Q Consensus 345 ~~l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 419 (681)
.+-+.|++|+|++| .+... +.+.+..-+.|+.|+|++|.+.......+ ...+..-
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~al--------------------A~aL~~N 97 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGL--------------------IELIETS 97 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTH--------------------HHHHHHC
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHH--------------------HHHHhcC
Confidence 44566777777764 55322 23445555667777777776654322222 1223334
Q ss_pred CCccEEEcccCcceec----cccccCCCCCCcEEECCCC---cCCC----cchhhhhcCCCCCEEEccCCcC
Q 005711 420 DSLKILDISNNQISGE----IPLTLAGLKSLEIVDFSSN---NLSG----SLNDAITKWTNLKYFSIARNKL 480 (681)
Q Consensus 420 ~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n---~l~~----~~~~~~~~l~~L~~L~L~~n~l 480 (681)
+.|+.|+|+.|.+.+. +-..+..-+.|++|+|++| .+.. .+...+..-+.|+.|+++.|..
T Consensus 98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 5666667776666543 2234455566777777654 2232 1334455556677777766554
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.33 E-value=0.032 Score=47.64 Aligned_cols=54 Identities=20% Similarity=0.222 Sum_probs=27.4
Q ss_pred EEEccCccCc-ccccC-cCCcccEEECCCCCCccccchhhccCCCCCEEEccCCcc
Q 005711 208 HLDLEKNNLT-GNVHD-FYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSV 261 (681)
Q Consensus 208 ~L~L~~n~l~-~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 261 (681)
.++.+++.++ ..+|. ...++++|+|++|+++..-+..|..+++|++|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555555554 12222 223355555555555544444555556666666666654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=43.55 E-value=27 Score=27.60 Aligned_cols=46 Identities=20% Similarity=0.262 Sum_probs=28.1
Q ss_pred CCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCC
Q 005711 118 FTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGN 164 (681)
Q Consensus 118 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 164 (681)
++.+-..+|.+|.+|+.+.|-.+ ++.+...+|.++.+|+.+.+...
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34444556677777777777653 44445566777777777666543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=31.10 E-value=61 Score=25.46 Aligned_cols=40 Identities=10% Similarity=-0.013 Sum_probs=21.8
Q ss_pred cccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccC
Q 005711 341 PLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSH 381 (681)
Q Consensus 341 p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 381 (681)
...|..+++|+.+.+..+ ++......|.+|.+|+.+.+..
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 345556666666666554 2333444556666666666553
No 167
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=23.70 E-value=15 Score=23.13 Aligned_cols=8 Identities=0% Similarity=0.173 Sum_probs=3.1
Q ss_pred hheehhhh
Q 005711 653 LSFFVSFY 660 (681)
Q Consensus 653 ~~~~~~~~ 660 (681)
++.++++.
T Consensus 18 vG~v~gv~ 25 (38)
T 2k1k_A 18 FGLLLGAA 25 (38)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 33333433
Done!