Query 005711
Match_columns 681
No_of_seqs 708 out of 5267
Neff 9.8
Searched_HMMs 13730
Date Mon Mar 25 05:17:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005711.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005711hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ogqa_ c.10.2.8 (A:) Polygala 100.0 4E-40 2.9E-44 336.7 19.0 289 41-359 5-302 (313)
2 d1ogqa_ c.10.2.8 (A:) Polygala 100.0 6.7E-32 4.9E-36 275.2 19.1 241 365-624 69-312 (313)
3 d2omza2 c.10.2.1 (A:33-416) In 100.0 3.4E-26 2.5E-30 239.7 33.4 146 345-502 238-383 (384)
4 d2omza2 c.10.2.1 (A:33-416) In 100.0 4E-26 2.9E-30 239.1 32.1 353 88-478 28-383 (384)
5 d1xkua_ c.10.2.7 (A:) Decorin 99.9 9E-24 6.5E-28 213.7 29.2 270 70-385 10-285 (305)
6 d1xkua_ c.10.2.7 (A:) Decorin 99.9 3.8E-23 2.8E-27 209.0 29.8 243 107-385 11-255 (305)
7 d1ozna_ c.10.2.7 (A:) Reticulo 99.9 4.8E-24 3.5E-28 213.2 15.6 231 349-597 33-265 (284)
8 d1ozna_ c.10.2.7 (A:) Reticulo 99.9 7.4E-23 5.4E-27 204.4 21.3 207 274-483 33-240 (284)
9 d1p9ag_ c.10.2.7 (G:) von Will 99.9 1.2E-21 8.9E-26 193.3 20.6 180 397-597 32-212 (266)
10 d1p9ag_ c.10.2.7 (G:) von Will 99.9 1.5E-20 1.1E-24 185.4 21.0 199 297-505 10-208 (266)
11 d1jl5a_ c.10.2.6 (A:) Leucine 99.8 4E-17 2.9E-21 167.5 31.6 239 325-597 99-340 (353)
12 d1jl5a_ c.10.2.6 (A:) Leucine 99.8 5.2E-17 3.8E-21 166.6 30.6 95 180-285 38-132 (353)
13 d1z7xw1 c.10.1.1 (W:1-460) Rib 99.8 1E-20 7.3E-25 202.2 1.2 115 83-218 3-126 (460)
14 d1z7xw1 c.10.1.1 (W:1-460) Rib 99.7 1.1E-19 7.9E-24 194.1 2.7 83 83-165 28-123 (460)
15 d1h6ua2 c.10.2.1 (A:36-262) In 99.7 3.7E-17 2.7E-21 156.7 17.1 58 529-589 169-226 (227)
16 d1h6ua2 c.10.2.1 (A:36-262) In 99.7 5.8E-17 4.2E-21 155.3 17.3 206 326-565 21-226 (227)
17 d1xwdc1 c.10.2.7 (C:18-259) Fo 99.7 1.4E-16 1E-20 154.4 15.7 219 327-589 11-234 (242)
18 d1h6ta2 c.10.2.1 (A:31-240) In 99.7 4.3E-16 3.1E-20 147.0 17.2 145 417-589 65-209 (210)
19 d1xwdc1 c.10.2.7 (C:18-259) Fo 99.7 3.5E-16 2.6E-20 151.4 16.3 211 89-304 15-232 (242)
20 d1w8aa_ c.10.2.7 (A:) Slit {Fr 99.7 2.2E-16 1.6E-20 146.8 12.1 171 327-505 11-183 (192)
21 d1h6ta2 c.10.2.1 (A:31-240) In 99.7 6.9E-16 5.1E-20 145.5 15.5 181 329-565 29-209 (210)
22 d2omxa2 c.10.2.1 (A:37-235) In 99.7 1.2E-15 8.8E-20 142.6 17.0 141 417-585 59-199 (199)
23 d1w8aa_ c.10.2.7 (A:) Slit {Fr 99.6 4.2E-16 3E-20 144.9 12.1 128 351-481 11-139 (192)
24 d2omxa2 c.10.2.1 (A:37-235) In 99.6 3.1E-15 2.2E-19 139.7 16.7 178 328-561 22-199 (199)
25 d2astb2 c.10.1.3 (B:2136-2419) 99.5 3.3E-15 2.4E-19 147.9 9.1 34 180-213 71-104 (284)
26 d2astb2 c.10.1.3 (B:2136-2419) 99.5 8.7E-15 6.4E-19 144.7 8.4 161 243-405 65-234 (284)
27 d2ca6a1 c.10.1.2 (A:2-345) Rna 99.4 2.4E-14 1.8E-18 146.1 6.3 65 100-164 25-103 (344)
28 d1dcea3 c.10.2.2 (A:444-567) R 99.4 2.9E-13 2.1E-17 115.0 10.6 70 524-594 34-104 (124)
29 d2ca6a1 c.10.1.2 (A:2-345) Rna 99.4 8.9E-14 6.5E-18 141.8 8.5 254 241-505 23-315 (344)
30 d1dcea3 c.10.2.2 (A:444-567) R 99.4 8.5E-13 6.2E-17 112.0 10.9 101 448-570 2-104 (124)
31 d1a9na_ c.10.2.4 (A:) Spliceso 99.4 6.8E-13 5E-17 118.5 9.6 109 346-457 16-125 (162)
32 d1a9na_ c.10.2.4 (A:) Spliceso 99.3 1.2E-12 8.9E-17 116.9 9.8 129 368-500 14-147 (162)
33 d1m9la_ c.10.3.1 (A:) Outer ar 99.2 5.2E-13 3.8E-17 123.7 -3.4 129 436-586 40-180 (198)
34 d2ifga3 c.10.2.7 (A:36-191) Hi 99.1 2.4E-10 1.7E-14 101.0 12.3 92 98-192 23-115 (156)
35 d1m9la_ c.10.3.1 (A:) Outer ar 99.1 1E-12 7.5E-17 121.7 -3.6 113 340-457 40-153 (198)
36 d2ifga3 c.10.2.7 (A:36-191) Hi 99.1 2E-10 1.5E-14 101.4 9.7 42 439-480 51-92 (156)
37 d1koha1 c.10.2.3 (A:201-362) m 98.2 9.2E-08 6.7E-12 84.5 -0.5 59 527-586 85-152 (162)
38 d1koha1 c.10.2.3 (A:201-362) m 97.9 7.6E-07 5.5E-11 78.4 -0.5 66 294-362 62-129 (162)
39 d1pgva_ c.10.1.1 (A:) Tropomod 97.5 5.5E-05 4E-09 66.4 5.6 61 419-479 71-142 (167)
40 d1pgva_ c.10.1.1 (A:) Tropomod 97.2 9.7E-05 7E-09 64.7 3.9 89 415-503 39-142 (167)
41 d1io0a_ c.10.1.1 (A:) Tropomod 96.7 0.00058 4.2E-08 59.5 4.7 64 418-481 15-87 (166)
42 d1io0a_ c.10.1.1 (A:) Tropomod 96.4 0.00073 5.3E-08 58.8 2.9 115 345-479 14-143 (166)
No 1
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Probab=100.00 E-value=4e-40 Score=336.69 Aligned_cols=289 Identities=29% Similarity=0.474 Sum_probs=225.7
Q ss_pred HHhHHHHHHHHhcCCCCCCCCCCC-CCCCCCC--CCceeecCCC--CcEEEEEcCCCCCcc--cccccccCCCCCCEEEC
Q 005711 41 LEDKASLLLFKSLVQDPTQKLSSW-VGSNCTN--WTGVACNFQT--GHVVSINLTDTSLSG--QVHPRLCKLSFLEFLVL 113 (681)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~~~~~w-~~~~cc~--w~gv~c~~~~--~~v~~L~L~~~~l~g--~~~~~l~~l~~L~~L~L 113 (681)
++|++||++||+++.+|. .+++| .+.|||. |+||+|+... +||++|+|+++++.| .+|+.++++++|++|+|
T Consensus 5 ~~e~~aLl~~k~~~~~~~-~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~L 83 (313)
T d1ogqa_ 5 PQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYI 83 (313)
T ss_dssp HHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEE
T ss_pred HHHHHHHHHHHHHCCCCC-cCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCcccccccc
Confidence 466679999999998874 68899 6789994 9999998543 489999999999988 57899999999999999
Q ss_pred CC-CcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCcC
Q 005711 114 SS-NAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSF 192 (681)
Q Consensus 114 s~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l 192 (681)
++ |.++|.+|..|+++++|++|+|++|++.+..|..+..+.+|+++++++| ...+.+|..++++ ++|+++++++|.+
T Consensus 84 s~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N-~~~~~~p~~l~~l-~~L~~l~l~~n~l 161 (313)
T d1ogqa_ 84 GGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPPSISSL-PNLVGITFDGNRI 161 (313)
T ss_dssp EEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSS-EEESCCCGGGGGC-TTCCEEECCSSCC
T ss_pred ccccccccccccccccccccchhhhccccccccccccccchhhhcccccccc-cccccCchhhccC-cccceeecccccc
Confidence 97 8999999999999999999999999999999999999999999999999 5667888999998 8999999999999
Q ss_pred ccccCccccCCCCC-CEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcc
Q 005711 193 CGEIPESLYYLKSL-KHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIAS 271 (681)
Q Consensus 193 ~~~~p~~l~~l~~L-~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~ 271 (681)
.+.+|..+..+.++ +.+++++|++++..+. .+..+. ...++++.+...+.+|..+..
T Consensus 162 ~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~---------------------~~~~l~-~~~l~l~~~~~~~~~~~~~~~ 219 (313)
T d1ogqa_ 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPP---------------------TFANLN-LAFVDLSRNMLEGDASVLFGS 219 (313)
T ss_dssp EEECCGGGGCCCTTCCEEECCSSEEEEECCG---------------------GGGGCC-CSEEECCSSEEEECCGGGCCT
T ss_pred ccccccccccccccccccccccccccccccc---------------------cccccc-ccccccccccccccccccccc
Confidence 99999988888776 7777877777655444 333332 234666666666666666666
Q ss_pred cCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCC
Q 005711 272 LQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQ 351 (681)
Q Consensus 272 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 351 (681)
+++++.+++++|.+.+.++ .+..+++|+.|++++|+++|.+|+.++.++ +|++|++++|+++|.+|. ++++++|+
T Consensus 220 ~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~---~L~~L~Ls~N~l~g~iP~-~~~L~~L~ 294 (313)
T d1ogqa_ 220 DKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLK---FLHSLNVSFNNLCGEIPQ-GGNLQRFD 294 (313)
T ss_dssp TSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCT---TCCEEECCSSEEEEECCC-STTGGGSC
T ss_pred ccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCC---CCCEEECcCCcccccCCC-cccCCCCC
Confidence 6666666666666655433 455666666677777777666676666655 677777777777766663 45666777
Q ss_pred EEeccCCc
Q 005711 352 ALFLSNNL 359 (681)
Q Consensus 352 ~L~L~~n~ 359 (681)
.+++++|+
T Consensus 295 ~l~l~~N~ 302 (313)
T d1ogqa_ 295 VSAYANNK 302 (313)
T ss_dssp GGGTCSSS
T ss_pred HHHhCCCc
Confidence 77777776
No 2
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Probab=99.97 E-value=6.7e-32 Score=275.23 Aligned_cols=241 Identities=30% Similarity=0.480 Sum_probs=166.9
Q ss_pred ccccCCCCCCCEEEccC-CcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCC
Q 005711 365 PARIGNLTYLQVIDLSH-NMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGL 443 (681)
Q Consensus 365 ~~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 443 (681)
|..++++++|++|++++ |.++|.+|..+..+++|++|++++|++.+..+..+..+..|+.++++.|.+.+.+|..+.++
T Consensus 69 p~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l 148 (313)
T d1ogqa_ 69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148 (313)
T ss_dssp CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred ChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccC
Confidence 33444444444444443 33444444444444444444444444444444444555566666666666666666666666
Q ss_pred CCCcEEECCCCcCCCcchhhhhcCCCC-CEEEccCCcCcccCCcccccCCccceeecccCccccCCCCCcccccCCcccc
Q 005711 444 KSLEIVDFSSNNLSGSLNDAITKWTNL-KYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLH 522 (681)
Q Consensus 444 ~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~ 522 (681)
+.++++++++|.+.+.+|..+..+..+ +.++++.|++++..|..+..+..+ .++++++...
T Consensus 149 ~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~------------------~l~l~~~~~~ 210 (313)
T d1ogqa_ 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA------------------FVDLSRNMLE 210 (313)
T ss_dssp TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS------------------EEECCSSEEE
T ss_pred cccceeeccccccccccccccccccccccccccccccccccccccccccccc------------------cccccccccc
Confidence 666666666666666666666665554 666667777766666555443322 2445555556
Q ss_pred ccCCcccccccccceeecCCCcCcccCCCcCCCCCCCEEECCCCcCcccCCccccCCCCCCeEecccCcceeeCCCCCCC
Q 005711 523 GTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVPWKQGY 602 (681)
Q Consensus 523 g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~ 602 (681)
|.+|..+..+++++.+++++|.+++.+|.++.+++|+.|++++|+++|.+|+.+.++++|++|++++|+++|.+|....+
T Consensus 211 ~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L 290 (313)
T d1ogqa_ 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL 290 (313)
T ss_dssp ECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTG
T ss_pred ccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccC
Confidence 67888888899999999999999988888888999999999999999999999999999999999999999999987777
Q ss_pred CCccc-cccCCCCCCCCCCCCCC
Q 005711 603 QKFPG-AFAGNPNLCLESSHGEC 624 (681)
Q Consensus 603 ~~~~~-~~~gn~~lc~~~~~~~c 624 (681)
..+.. .+.||+.+||.|++ .|
T Consensus 291 ~~L~~l~l~~N~~l~g~plp-~c 312 (313)
T d1ogqa_ 291 QRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp GGSCGGGTCSSSEEESTTSS-CC
T ss_pred CCCCHHHhCCCccccCCCCC-CC
Confidence 77776 89999999998865 55
No 3
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}
Probab=99.95 E-value=3.4e-26 Score=239.73 Aligned_cols=146 Identities=27% Similarity=0.399 Sum_probs=70.8
Q ss_pred cCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccE
Q 005711 345 TELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKI 424 (681)
Q Consensus 345 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 424 (681)
..+++|+.|++++|.+++..+ +..+++|++|++++|.+.+.. .+..++.++.+.+..|.+.+. ..+..+++++.
T Consensus 238 ~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~ 311 (384)
T d2omza2 238 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTY 311 (384)
T ss_dssp GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSE
T ss_pred hcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCC--ccccccccccccccccccccc--cccchhcccCe
Confidence 334444444444444433221 334444444444444443221 133344444444444444431 12344555566
Q ss_pred EEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccC
Q 005711 425 LDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTN 502 (681)
Q Consensus 425 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n 502 (681)
|++++|++++..+ +..+++|++|++++|++++ ++ .+.++++|++|++++|++++..| +.++++|+.|++++|
T Consensus 312 L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 312 LTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp EECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred EECCCCCCCCCcc--cccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence 6666665554322 4555666666666666553 22 35556666666666666654332 555666666666655
No 4
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}
Probab=99.95 E-value=4e-26 Score=239.13 Aligned_cols=353 Identities=22% Similarity=0.251 Sum_probs=265.2
Q ss_pred EcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCC
Q 005711 88 NLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPEL 167 (681)
Q Consensus 88 ~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~ 167 (681)
.+....+.+.+. ...+.+|++|+++++.++.. +.++.+++|++|++++|++++. | .|+++++|++|++++|++
T Consensus 28 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i- 100 (384)
T d2omza2 28 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQI- 100 (384)
T ss_dssp HTTCSSTTSEEC--HHHHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCC-
T ss_pred HhCCCCCCCccC--HHHhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCC-c-cccCCccccccccccccc-
Confidence 344555555443 34567899999999998853 4588899999999999999854 3 389999999999999954
Q ss_pred CccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCc---ccEEECCCCCCccccchh
Q 005711 168 GGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQS---LLVLNLGSNRFSGTLPCF 244 (681)
Q Consensus 168 ~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~---L~~L~L~~n~l~~~~~~~ 244 (681)
.+ ++ .++++ ++|+.|+++++.+++..+ ......+.......|.+.......... ......... ....
T Consensus 101 ~~-i~-~l~~l-~~L~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 170 (384)
T d2omza2 101 AD-IT-PLANL-TNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT-----DLKP 170 (384)
T ss_dssp CC-CG-GGTTC-TTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCC-----CCGG
T ss_pred cc-cc-ccccc-cccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccc-----hhhh
Confidence 33 22 36777 899999999988875432 445567778888777765444332222 111111111 1233
Q ss_pred hccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCC
Q 005711 245 AASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKA 324 (681)
Q Consensus 245 ~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~ 324 (681)
+...+.........|... .......+++++.+++++|.+++..+ ....++|+.|++++|.++. ++ .+..+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~~-~l~~l~--- 241 (384)
T d2omza2 171 LANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IG-TLASLT--- 241 (384)
T ss_dssp GTTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CG-GGGGCT---
T ss_pred hccccccccccccccccc--cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-cc-hhhccc---
Confidence 444455556666555443 35567788999999999999886544 5667899999999999874 32 444444
Q ss_pred CccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecc
Q 005711 325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVN 404 (681)
Q Consensus 325 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~ 404 (681)
+|+.+++++|.+++..+ +..+++|++|+++++++++.. .+..++.++.++++.|.+++. ..+..+++++.++++
T Consensus 242 ~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls 315 (384)
T d2omza2 242 NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLY 315 (384)
T ss_dssp TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECC
T ss_pred ccchhccccCccCCCCc--ccccccCCEeeccCcccCCCC--ccccccccccccccccccccc--cccchhcccCeEECC
Confidence 89999999999986543 778899999999999998653 377889999999999998863 357888999999999
Q ss_pred cccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCC
Q 005711 405 NNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARN 478 (681)
Q Consensus 405 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 478 (681)
+|++++..+ +..+++|+.|++++|++++ ++ .++++++|++|++++|++++..| +.++++|++|+|++|
T Consensus 316 ~n~l~~l~~--l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 316 FNNISDISP--VSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp SSCCSCCGG--GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred CCCCCCCcc--cccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence 999987643 7789999999999999985 44 58899999999999999997654 889999999999987
No 5
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Probab=99.92 E-value=9e-24 Score=213.66 Aligned_cols=270 Identities=23% Similarity=0.243 Sum_probs=193.3
Q ss_pred CCCCceeecCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCcc
Q 005711 70 TNWTGVACNFQTGHVVSINLTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDA 149 (681)
Q Consensus 70 c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 149 (681)
|.|++|.|+. .+++ .+|..+. +.+++|+|++|+++...+..|.++++|++|++++|.+....|.+
T Consensus 10 c~~~~~~C~~------------~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~ 74 (305)
T d1xkua_ 10 CHLRVVQCSD------------LGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA 74 (305)
T ss_dssp EETTEEECTT------------SCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT
T ss_pred ecCCEEEecC------------CCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhh
Confidence 5788888863 2233 4566554 68999999999999777778999999999999999999888889
Q ss_pred ccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccE
Q 005711 150 IMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLV 229 (681)
Q Consensus 150 ~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~ 229 (681)
|.++++|++|++++|++ ..+|..+. ..++.|++..|.+.+..+..+.....++.++...|.....
T Consensus 75 f~~l~~L~~L~l~~n~l--~~l~~~~~---~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~---------- 139 (305)
T d1xkua_ 75 FAPLVKLERLYLSKNQL--KELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS---------- 139 (305)
T ss_dssp TTTCTTCCEEECCSSCC--SBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG----------
T ss_pred hhCCCccCEecccCCcc--CcCccchh---hhhhhhhccccchhhhhhhhhhcccccccccccccccccc----------
Confidence 99999999999999954 24554433 5788899998888866555667777777777777654321
Q ss_pred EECCCCCCccccchhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCc
Q 005711 230 LNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDL 309 (681)
Q Consensus 230 L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 309 (681)
...+..+..+++|+.+++++|.+.. +|.. .+++|++|++++|...+..+..+..++.++.|++++|.+
T Consensus 140 ---------~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l 207 (305)
T d1xkua_ 140 ---------GIENGAFQGMKKLSYIRIADTNITT-IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207 (305)
T ss_dssp ---------GBCTTGGGGCTTCCEEECCSSCCCS-CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCC
T ss_pred ---------CCCccccccccccCccccccCCccc-cCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccc
Confidence 1334456666777777777777653 3332 246777777777777777777777777777777777777
Q ss_pred cCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccc------cCCCCCCCEEEccCCc
Q 005711 310 SGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPAR------IGNLTYLQVIDLSHNM 383 (681)
Q Consensus 310 ~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~------l~~l~~L~~L~Ls~n~ 383 (681)
++..+..+..+. +|++|++++|+++ .+|.++..+++|++|++++|+++...... .....+|+.|++++|.
T Consensus 208 ~~~~~~~~~~l~---~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~ 283 (305)
T d1xkua_ 208 SAVDNGSLANTP---HLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 283 (305)
T ss_dssp CEECTTTGGGST---TCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred cccccccccccc---cceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCc
Confidence 766665555554 6777777777776 45667777777777777777776433222 2345667777777776
Q ss_pred Cc
Q 005711 384 LS 385 (681)
Q Consensus 384 l~ 385 (681)
+.
T Consensus 284 ~~ 285 (305)
T d1xkua_ 284 VQ 285 (305)
T ss_dssp SC
T ss_pred Cc
Confidence 54
No 6
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Probab=99.92 E-value=3.8e-23 Score=208.99 Aligned_cols=243 Identities=22% Similarity=0.285 Sum_probs=131.6
Q ss_pred CCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhccccCCccEEE
Q 005711 107 FLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVGNFSMNLEKLD 186 (681)
Q Consensus 107 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~~l~~~L~~L~ 186 (681)
..+.+|-++++++ .+|..+. +.+++|+|++|+++...+.+|.++++|++|++++|
T Consensus 11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n---------------------- 65 (305)
T d1xkua_ 11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN---------------------- 65 (305)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS----------------------
T ss_pred cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccc----------------------
Confidence 4566777777776 3455443 56777777777777444446666666666666655
Q ss_pred ccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCCccc--cC
Q 005711 187 FSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNNSVV--GG 264 (681)
Q Consensus 187 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~--~~ 264 (681)
.+....|..|.++++|++|++++|+++.........++.|++.+|.+.+..+..+.....++.++...|... ..
T Consensus 66 ----~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~ 141 (305)
T d1xkua_ 66 ----KISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 141 (305)
T ss_dssp ----CCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGB
T ss_pred ----cccccchhhhhCCCccCEecccCCccCcCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCC
Confidence 344334455556666666666666665544444445666666666665555555666666777777666432 23
Q ss_pred CChhhcccCcccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccc
Q 005711 265 IPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKI 344 (681)
Q Consensus 265 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l 344 (681)
.+..+..+++|+.+++++|.+. .++.. .+++|+.|++++|..++..+..+..+. .+++|++++|.+++..+.++
T Consensus 142 ~~~~~~~l~~L~~l~l~~n~l~-~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~---~l~~L~~s~n~l~~~~~~~~ 215 (305)
T d1xkua_ 142 ENGAFQGMKKLSYIRIADTNIT-TIPQG--LPPSLTELHLDGNKITKVDAASLKGLN---NLAKLGLSFNSISAVDNGSL 215 (305)
T ss_dssp CTTGGGGCTTCCEEECCSSCCC-SCCSS--CCTTCSEEECTTSCCCEECTGGGTTCT---TCCEEECCSSCCCEECTTTG
T ss_pred CccccccccccCccccccCCcc-ccCcc--cCCccCEEECCCCcCCCCChhHhhccc---cccccccccccccccccccc
Confidence 3445556666666666666554 22222 134455555555554444444433333 44445555555444444444
Q ss_pred cCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCc
Q 005711 345 TELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLS 385 (681)
Q Consensus 345 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 385 (681)
..+++|++|+|++|.++ .+|..+.++++|++|++++|+++
T Consensus 216 ~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~ 255 (305)
T d1xkua_ 216 ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 255 (305)
T ss_dssp GGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred cccccceeeeccccccc-ccccccccccCCCEEECCCCccC
Confidence 44444555555444444 23444444444444444444444
No 7
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.90 E-value=4.8e-24 Score=213.20 Aligned_cols=231 Identities=20% Similarity=0.188 Sum_probs=118.7
Q ss_pred CCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecc-cccccccCccccCCCCCccEEEc
Q 005711 349 SLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVN-NNNLSGEIQPELDALDSLKILDI 427 (681)
Q Consensus 349 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~L 427 (681)
++++|+|++|++++..+..|.++++|++|++++|.+.+..+..+.....+..+... .+.+....+..+..+++|+.|++
T Consensus 33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l 112 (284)
T d1ozna_ 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (284)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence 34444444444443333334444444444444444444444444444444444332 22333333444555555555555
Q ss_pred ccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccC
Q 005711 428 SNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGF 507 (681)
Q Consensus 428 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~ 507 (681)
++|.+....+..+..+++|+.+++++|++++..+..+..+++|+.|++++|++++..+..+..+++|+.+++++|++++
T Consensus 113 ~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~- 191 (284)
T d1ozna_ 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH- 191 (284)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-
T ss_pred CCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccc-
Confidence 5555554444455555555566666655554444555555556666666666555445555555555555555444432
Q ss_pred CCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCCCCCCEEECCCCcCcccCCccccCCCCCCeEe
Q 005711 508 IPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLN 586 (681)
Q Consensus 508 ~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 586 (681)
..|..|.++++|++|++++|++.+..|. ++.+++|+.|++++|.+.+..+.. .-...++.+.
T Consensus 192 ----------------i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~-~l~~~l~~~~ 254 (284)
T d1ozna_ 192 ----------------VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFR 254 (284)
T ss_dssp ----------------ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCC
T ss_pred ----------------cChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccch-HHHHHHHhCc
Confidence 3455566666666666666666655555 666666666666666666543311 1112234445
Q ss_pred cccCcceeeCC
Q 005711 587 LSYNSFSGFVP 597 (681)
Q Consensus 587 ls~N~l~~~~p 597 (681)
...+++.|..|
T Consensus 255 ~~~~~~~C~~p 265 (284)
T d1ozna_ 255 GSSSEVPCSLP 265 (284)
T ss_dssp SEECCCBEEES
T ss_pred CCCCceEeCCc
Confidence 55566666554
No 8
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.90 E-value=7.4e-23 Score=204.44 Aligned_cols=207 Identities=22% Similarity=0.198 Sum_probs=140.1
Q ss_pred cccEEecCCCccccccCccccCCCCCcEEeccCCCccCCCChhhhhcccCCCccEEEcc-CCCCcCCCcccccCCCCCCE
Q 005711 274 ALTHLNLSHNHLNYEISPRLVFFEKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLS-HNRFSGEIPLKITELKSLQA 352 (681)
Q Consensus 274 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls-~n~l~~~~p~~l~~l~~L~~ 352 (681)
++++|+|++|+++...+..+..+++|++|++++|.+.+..+..+.... .++.++.. .+.++...+..+.++++|++
T Consensus 33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~---~~~~l~~~~~~~~~~l~~~~~~~l~~L~~ 109 (284)
T d1ozna_ 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA---LLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (284)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT---TCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccc---cccccccccccccccccchhhcccccCCE
Confidence 455555555555544444455555566666665555544443333333 45555443 44455445566677777777
Q ss_pred EeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcc
Q 005711 353 LFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQI 432 (681)
Q Consensus 353 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 432 (681)
|++++|.+....+..+...++|+.+++++|.+++..+..+..+++|+.|++++|.+.+..+..|.++++|+.+++++|++
T Consensus 110 L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l 189 (284)
T d1ozna_ 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189 (284)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccc
Confidence 77777777655566666677777777777777765556666667777777777777766666777788888888888888
Q ss_pred eeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCccc
Q 005711 433 SGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGN 483 (681)
Q Consensus 433 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 483 (681)
++..|..|.++++|++|++++|++.+..+..+..+++|++|++++|.+.+.
T Consensus 190 ~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~ 240 (284)
T d1ozna_ 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (284)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred cccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCC
Confidence 877788888888888888888888877777788888888888888877653
No 9
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.87 E-value=1.2e-21 Score=193.31 Aligned_cols=180 Identities=23% Similarity=0.184 Sum_probs=127.6
Q ss_pred CcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEcc
Q 005711 397 QLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIA 476 (681)
Q Consensus 397 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 476 (681)
++++|++++|.+++..+..|..+++|+.|+|++|+++. +| .++.+++|++|++++|++++ .+..+..+++|++|+++
T Consensus 32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~ 108 (266)
T d1p9ag_ 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVS 108 (266)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECC
T ss_pred CCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccccccccccccc-ccccccccccccccccc
Confidence 34444444444444434455566666666666666653 33 24566777777777777663 34456667777777777
Q ss_pred CCcCcccCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCC-cCCC
Q 005711 477 RNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPG-LYRL 555 (681)
Q Consensus 477 ~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l 555 (681)
+|.+.+..+..+..+.+++.|++++|.+.+ ..+..+..+++++.|++++|++++..+. +..+
T Consensus 109 ~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~-----------------l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l 171 (266)
T d1p9ag_ 109 FNRLTSLPLGALRGLGELQELYLKGNELKT-----------------LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171 (266)
T ss_dssp SSCCCCCCSSTTTTCTTCCEEECTTSCCCC-----------------CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTC
T ss_pred ccccceeeccccccccccccccccccccce-----------------eccccccccccchhcccccccccccCccccccc
Confidence 777665555555566666666666555542 3345566788999999999999987777 8889
Q ss_pred CCCCEEECCCCcCcccCCccccCCCCCCeEecccCcceeeCC
Q 005711 556 RSLRALDLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVP 597 (681)
Q Consensus 556 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 597 (681)
++|+.|||++|+|+ .+|..+..+++|+.|++++|++.|.+.
T Consensus 172 ~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~ 212 (266)
T d1p9ag_ 172 ENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (266)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred cccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcc
Confidence 99999999999999 889888899999999999999998764
No 10
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.85 E-value=1.5e-20 Score=185.45 Aligned_cols=199 Identities=24% Similarity=0.269 Sum_probs=141.3
Q ss_pred CCCcEEeccCCCccCCCChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCE
Q 005711 297 EKLLLLDLSFNDLSGPLPSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQV 376 (681)
Q Consensus 297 ~~L~~L~L~~n~l~~~~p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 376 (681)
..+.+++.+++.++ .+|+.+.. ++++|+|++|++++..+..|..+++|++|+|++|+++. ++ .++.+++|++
T Consensus 10 ~~~~~v~C~~~~L~-~iP~~lp~-----~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~ 81 (266)
T d1p9ag_ 10 ASHLEVNCDKRNLT-ALPPDLPK-----DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGT 81 (266)
T ss_dssp TTCCEEECTTSCCS-SCCSCCCT-----TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCE
T ss_pred CCCeEEEccCCCCC-eeCcCcCc-----CCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccc
Confidence 34445566666665 35544431 56777777777765545566777777777777777663 33 3456777777
Q ss_pred EEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcC
Q 005711 377 IDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNL 456 (681)
Q Consensus 377 L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 456 (681)
|++++|++++ .+..+..+++|+.|++++|.+.+..+..+..+.+++.|++++|.+....+..+..+++|+.+++++|++
T Consensus 82 L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l 160 (266)
T d1p9ag_ 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (266)
T ss_dssp EECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred cccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccc
Confidence 7777777763 455666777777777777777766666677778888888888888766666777788888888888888
Q ss_pred CCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccc
Q 005711 457 SGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFM 505 (681)
Q Consensus 457 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~ 505 (681)
++..+..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|.+.
T Consensus 161 ~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence 8777777778888888888888887 67777778888888888887664
No 11
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}
Probab=99.79 E-value=4e-17 Score=167.49 Aligned_cols=239 Identities=27% Similarity=0.288 Sum_probs=119.9
Q ss_pred CccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecc
Q 005711 325 GLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVN 404 (681)
Q Consensus 325 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~ 404 (681)
.|++|++++|.++ .+|. ++.+++|+.|+++++.+.... . ....+..+.+..+... .+..+..++.++.+.+.
T Consensus 99 ~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~~-~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~ 170 (353)
T d1jl5a_ 99 LLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKKLP-D---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYAD 170 (353)
T ss_dssp TCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECC
T ss_pred ccccccccccccc-cccc-hhhhccceeeccccccccccc-c---ccccccchhhcccccc--ccccccccccceecccc
Confidence 3555555555544 2332 344455555555555443221 1 1233444444433322 12223344444555555
Q ss_pred cccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccC
Q 005711 405 NNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNL 484 (681)
Q Consensus 405 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 484 (681)
.|....... .....+.+...++.+. .++ .+..++.|+.+++++|.... ++. ...++..+.+.++.+.. .
T Consensus 171 ~n~~~~~~~----~~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~-~~~---~~~~l~~~~~~~~~~~~-~ 239 (353)
T d1jl5a_ 171 NNSLKKLPD----LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-L 239 (353)
T ss_dssp SSCCSSCCC----CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-C
T ss_pred ccccccccc----cccccccccccccccc-ccc-cccccccccccccccccccc-ccc---ccccccccccccccccc-c
Confidence 444432111 1122334444443333 222 23455566666666655442 221 23345555565555542 1
Q ss_pred CcccccCCccceeecccCcccc---CCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCCcCCCCCCCEE
Q 005711 485 PNWLFSFQAIQMMDFSTNKFMG---FIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRAL 561 (681)
Q Consensus 485 p~~~~~l~~L~~L~ls~n~~~~---~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L 561 (681)
+. ....+...++..+.+.+ ........++..+.+.+ ++ ..+++|++|+|++|+++ .+|. .+++|+.|
T Consensus 240 ~~---~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~-~~---~~~~~L~~L~Ls~N~l~-~lp~--~~~~L~~L 309 (353)
T d1jl5a_ 240 PE---LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRS-LC---DLPPSLEELNVSNNKLI-ELPA--LPPRLERL 309 (353)
T ss_dssp CC---CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSE-EC---CCCTTCCEEECCSSCCS-CCCC--CCTTCCEE
T ss_pred cc---ccccccccccccccccccccccchhcccccccCcccc-cc---ccCCCCCEEECCCCccC-cccc--ccCCCCEE
Confidence 11 12334444444443332 12223345555555552 22 23578899999999888 5664 35788899
Q ss_pred ECCCCcCcccCCccccCCCCCCeEecccCcceeeCC
Q 005711 562 DLSHNSLTGQIPGNISSLQELTLLNLSYNSFSGFVP 597 (681)
Q Consensus 562 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 597 (681)
++++|+++ .+|+. +++|++|++++|+++ .+|
T Consensus 310 ~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp 340 (353)
T d1jl5a_ 310 IASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFP 340 (353)
T ss_dssp ECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCC
T ss_pred ECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCC
Confidence 99999988 56754 457889999999987 345
No 12
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}
Probab=99.78 E-value=5.2e-17 Score=166.62 Aligned_cols=95 Identities=23% Similarity=0.312 Sum_probs=52.8
Q ss_pred CCccEEEccCCcCccccCccccCCCCCCEEEccCccCcccccCcCCcccEEECCCCCCccccchhhccCCCCCEEEccCC
Q 005711 180 MNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEKNNLTGNVHDFYQSLLVLNLGSNRFSGTLPCFAASAMSLTVLKLDNN 259 (681)
Q Consensus 180 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n 259 (681)
.++++||++++.++ .+|+. .++|++|++++|+++ .+|..+.+|+.|++++|+++. ++.. .+.|++|++++|
T Consensus 38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~~~L~~L~l~~n~l~~-l~~l---p~~L~~L~L~~n 108 (353)
T d1jl5a_ 38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNN 108 (353)
T ss_dssp HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCCTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSS
T ss_pred cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccchhhhhhhhhhhcccch-hhhh---cccccccccccc
Confidence 36778888888877 56653 457778888887777 335555566666666666542 2210 123555555555
Q ss_pred ccccCCChhhcccCcccEEecCCCcc
Q 005711 260 SVVGGIPTCIASLQALTHLNLSHNHL 285 (681)
Q Consensus 260 ~l~~~~p~~l~~l~~L~~L~L~~n~l 285 (681)
.+. .+|. ++.+++|++|+++++.+
T Consensus 109 ~l~-~lp~-~~~l~~L~~L~l~~~~~ 132 (353)
T d1jl5a_ 109 QLE-KLPE-LQNSSFLKIIDVDNNSL 132 (353)
T ss_dssp CCS-SCCC-CTTCTTCCEEECCSSCC
T ss_pred ccc-cccc-hhhhccceeeccccccc
Confidence 544 2232 33444444444444443
No 13
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.78 E-value=1e-20 Score=202.24 Aligned_cols=115 Identities=22% Similarity=0.224 Sum_probs=55.8
Q ss_pred cEEEEEcCCCCCccc-ccccccCCCCCCEEECCCCcCCcc----ccccccCCCCCCEEEccCCCCCCcCCccccCCCCCC
Q 005711 83 HVVSINLTDTSLSGQ-VHPRLCKLSFLEFLVLSSNAFTGR----ISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLR 157 (681)
Q Consensus 83 ~v~~L~L~~~~l~g~-~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 157 (681)
.+++||++++++++. +..-+..++++++|+|++|.++.. ++..+..+++|++|||++|.++......+
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l------- 75 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCV------- 75 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHH-------
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHH-------
Confidence 355566666555542 122234445555555555555421 33344455555555555555431100011
Q ss_pred EeeCCCCCCCCccCCchhccccCCccEEEccCCcCccc----cCccccCCCCCCEEEccCccCcc
Q 005711 158 ELILKGNPELGGVFPGWVGNFSMNLEKLDFSFNSFCGE----IPESLYYLKSLKHLDLEKNNLTG 218 (681)
Q Consensus 158 ~L~L~~n~~~~~~~p~~l~~l~~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~ 218 (681)
...+.....+|++|++++|.+++. ++..+..+++|++|++++|.++.
T Consensus 76 --------------~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~ 126 (460)
T d1z7xw1 76 --------------LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 126 (460)
T ss_dssp --------------HHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred --------------HHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence 111111113566666666666532 34455666777777777776653
No 14
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.74 E-value=1.1e-19 Score=194.11 Aligned_cols=83 Identities=22% Similarity=0.245 Sum_probs=63.9
Q ss_pred cEEEEEcCCCCCcc----cccccccCCCCCCEEECCCCcCCcc----cccccc-CCCCCCEEEccCCCCCCc----CCcc
Q 005711 83 HVVSINLTDTSLSG----QVHPRLCKLSFLEFLVLSSNAFTGR----ISTCFG-GLSGLKTLDLSYNKFVGV----VPDA 149 (681)
Q Consensus 83 ~v~~L~L~~~~l~g----~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~-~l~~L~~L~Ls~n~l~~~----~p~~ 149 (681)
+++.|+|++++++. .+...+..+++|++|||++|.++.. +...+. ...+|++|+|++|+++.. ++..
T Consensus 28 ~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~ 107 (460)
T d1z7xw1 28 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST 107 (460)
T ss_dssp TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred CCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccch
Confidence 46689999999873 3455678999999999999998643 333333 345899999999998754 3556
Q ss_pred ccCCCCCCEeeCCCCC
Q 005711 150 IMKLRNLRELILKGNP 165 (681)
Q Consensus 150 ~~~l~~L~~L~L~~n~ 165 (681)
+..+++|++|++++|+
T Consensus 108 l~~~~~L~~L~L~~N~ 123 (460)
T d1z7xw1 108 LRTLPTLQELHLSDNL 123 (460)
T ss_dssp TTSCTTCCEEECCSSB
T ss_pred hhcccccccccccccc
Confidence 7788999999999884
No 15
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}
Probab=99.72 E-value=3.7e-17 Score=156.69 Aligned_cols=58 Identities=21% Similarity=0.287 Sum_probs=38.0
Q ss_pred cccccccceeecCCCcCcccCCCcCCCCCCCEEECCCCcCcccCCccccCCCCCCeEeccc
Q 005711 529 LFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNISSLQELTLLNLSY 589 (681)
Q Consensus 529 l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 589 (681)
+.++++|++|+|++|++++ ++.+.++++|+.|++++|++++. | .++++++|+.|++++
T Consensus 169 l~~l~~L~~L~Ls~n~l~~-l~~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 169 LANLSKLTTLKADDNKISD-ISPLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTN 226 (227)
T ss_dssp GTTCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEE
T ss_pred hcccccceecccCCCccCC-ChhhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEeeC
Confidence 4556667777777777663 45566677777777777777743 3 266777777777653
No 16
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}
Probab=99.72 E-value=5.8e-17 Score=155.32 Aligned_cols=206 Identities=21% Similarity=0.314 Sum_probs=164.0
Q ss_pred ccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeeccc
Q 005711 326 LVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNN 405 (681)
Q Consensus 326 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~ 405 (681)
+..++++.+++++.. .+..+.+|++|++.+|.++. + +.+.++++|++|++++|.+++..| +..+++++.+++++
T Consensus 21 ~~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~ 94 (227)
T d1h6ua2 21 AIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSG 94 (227)
T ss_dssp HHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCS
T ss_pred HHHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--cccccccccccccc
Confidence 445678888888654 35667899999999999885 4 458899999999999999986544 78889999999999
Q ss_pred ccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCC
Q 005711 406 NNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLP 485 (681)
Q Consensus 406 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 485 (681)
|.++. + ..+..+++|+.++++++...+. ..+...+.++.+.++++.+.... .+..+++|++|++++|.+.+.
T Consensus 95 n~~~~-i-~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~-- 166 (227)
T d1h6ua2 95 NPLKN-V-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDL-- 166 (227)
T ss_dssp CCCSC-C-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCC--
T ss_pred ccccc-c-cccccccccccccccccccccc--chhccccchhhhhchhhhhchhh--hhccccccccccccccccccc--
Confidence 98874 3 2477889999999999887754 33567888999999999887543 367788999999999988643
Q ss_pred cccccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCCcCCCCCCCEEECCC
Q 005711 486 NWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSH 565 (681)
Q Consensus 486 ~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~ 565 (681)
..+.++++|+.|++++|+++ .+| .+.++++|++|+|++|++++ ++.+.++++|+.|++++
T Consensus 167 ~~l~~l~~L~~L~Ls~n~l~------------------~l~-~l~~l~~L~~L~Ls~N~lt~-i~~l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 167 TPLANLSKLTTLKADDNKIS------------------DIS-PLASLPNLIEVHLKNNQISD-VSPLANTSNLFIVTLTN 226 (227)
T ss_dssp GGGTTCTTCCEEECCSSCCC------------------CCG-GGGGCTTCCEEECTTSCCCB-CGGGTTCTTCCEEEEEE
T ss_pred hhhcccccceecccCCCccC------------------CCh-hhcCCCCCCEEECcCCcCCC-CcccccCCCCCEEEeeC
Confidence 23677888888888777665 233 37789999999999999984 66688999999999974
No 17
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.69 E-value=1.4e-16 Score=154.36 Aligned_cols=219 Identities=16% Similarity=0.105 Sum_probs=114.4
Q ss_pred cEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccC-cccccCCCcceeeccc
Q 005711 327 VLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIP-LNIVGCFQLLALIVNN 405 (681)
Q Consensus 327 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~~~~L~~L~l~~ 405 (681)
+.++.++..++ .+|..+. +++++|++++|.++...+..|.++++|++|++++|.+...++ ..|.+++.++++.+..
T Consensus 11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~ 87 (242)
T d1xwdc1 11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87 (242)
T ss_dssp SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence 55666666666 5565443 467777777777765555567777777777777777665443 2344455555554432
Q ss_pred -ccccccCccccCCCCCccEEEcccCcceecccc-ccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCccc
Q 005711 406 -NNLSGEIQPELDALDSLKILDISNNQISGEIPL-TLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGN 483 (681)
Q Consensus 406 -n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 483 (681)
|.+....+..+.++++|+.+++++|.+....+. .+..+..+..+...++.+....+..+..++
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~--------------- 152 (242)
T d1xwdc1 88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS--------------- 152 (242)
T ss_dssp CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSB---------------
T ss_pred cccccccccccccccccccccccchhhhccccccccccccccccccccccccccccccccccccc---------------
Confidence 344444444445555555555555554422111 111222333333333333222122222111
Q ss_pred CCcccccCCccceeecccCccccCCCCCcccccCCccccccCCccccccccccee-ecCCCcCcccCCC-cCCCCCCCEE
Q 005711 484 LPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYL-NLSFNFLDGQVPG-LYRLRSLRAL 561 (681)
Q Consensus 484 ~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L-~Ls~N~l~~~ip~-~~~l~~L~~L 561 (681)
..++. +++++|+++ .++.......+++++ ++++|+++...+. +.++++|+.|
T Consensus 153 --------~~l~~-----------------L~l~~n~l~-~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L 206 (242)
T d1xwdc1 153 --------FESVI-----------------LWLNKNGIQ-EIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL 206 (242)
T ss_dssp --------SSCEE-----------------EECCSSCCC-EECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEE
T ss_pred --------cccee-----------------eeccccccc-ccccccccchhhhccccccccccccccHHHhcCCCCCCEE
Confidence 12222 333333333 344444444454444 4566777743333 6778888888
Q ss_pred ECCCCcCcccCCccccCCCCCCeEeccc
Q 005711 562 DLSHNSLTGQIPGNISSLQELTLLNLSY 589 (681)
Q Consensus 562 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 589 (681)
++++|+++...+..|.+++.|+++++.+
T Consensus 207 ~Ls~N~l~~l~~~~~~~l~~L~~l~~~~ 234 (242)
T d1xwdc1 207 DISRTRIHSLPSYGLENLKKLRARSTYN 234 (242)
T ss_dssp ECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred ECCCCcCCccCHHHHcCCcccccCcCCC
Confidence 8888888855555667777666666543
No 18
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}
Probab=99.68 E-value=4.3e-16 Score=147.00 Aligned_cols=145 Identities=25% Similarity=0.329 Sum_probs=91.5
Q ss_pred CCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccce
Q 005711 417 DALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQM 496 (681)
Q Consensus 417 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 496 (681)
..+++|+.|++++|++++.. .++.+++|++|++++|++++ ++ .+..+++|+.|++++|.+.. ...+..++.++.
T Consensus 65 ~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~ 138 (210)
T d1h6ta2 65 QYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD--INGLVHLPQLES 138 (210)
T ss_dssp GGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC--CGGGGGCTTCCE
T ss_pred hhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-cccccccccccccccccccc--cccccccccccc
Confidence 44555666666666655432 24556666666666666653 23 35556666666666666542 223555556666
Q ss_pred eecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCCcCCCCCCCEEECCCCcCcccCCccc
Q 005711 497 MDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNI 576 (681)
Q Consensus 497 L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~N~l~~~~p~~l 576 (681)
+++++|.+++ +..+..+++|+.+++++|++++ ++.+.++++|+.|++++|+++. +| .+
T Consensus 139 l~~~~n~l~~-------------------~~~~~~l~~L~~l~l~~n~l~~-i~~l~~l~~L~~L~Ls~N~i~~-l~-~l 196 (210)
T d1h6ta2 139 LYLGNNKITD-------------------ITVLSRLTKLDTLSLEDNQISD-IVPLAGLTKLQNLYLSKNHISD-LR-AL 196 (210)
T ss_dssp EECCSSCCCC-------------------CGGGGGCTTCSEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCB-CG-GG
T ss_pred cccccccccc-------------------cccccccccccccccccccccc-cccccCCCCCCEEECCCCCCCC-Ch-hh
Confidence 6665555431 2335567788888888888874 5557788888888888888874 55 47
Q ss_pred cCCCCCCeEeccc
Q 005711 577 SSLQELTLLNLSY 589 (681)
Q Consensus 577 ~~l~~L~~L~ls~ 589 (681)
+.+++|++|++++
T Consensus 197 ~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 197 AGLKNLDVLELFS 209 (210)
T ss_dssp TTCTTCSEEEEEE
T ss_pred cCCCCCCEEEccC
Confidence 8888888888764
No 19
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.67 E-value=3.5e-16 Score=151.41 Aligned_cols=211 Identities=17% Similarity=0.125 Sum_probs=127.3
Q ss_pred cCCCCCcccccccccCCCCCCEEECCCCcCCccccccccCCCCCCEEEccCCCCCCcC-CccccCCCCCCEeeCCCCCCC
Q 005711 89 LTDTSLSGQVHPRLCKLSFLEFLVLSSNAFTGRISTCFGGLSGLKTLDLSYNKFVGVV-PDAIMKLRNLRELILKGNPEL 167 (681)
Q Consensus 89 L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~~~ 167 (681)
.++.++. .+|+.+. +++++||+++|.++...+..|.++++|++|++++|.+...+ +.+|.++++++++.+..++..
T Consensus 15 c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l 91 (242)
T d1xwdc1 15 CQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL 91 (242)
T ss_dssp EESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTC
T ss_pred EeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccc
Confidence 3344444 4565553 57899999999998766778999999999999999887654 457888999999988765455
Q ss_pred CccCCchhccccCCccEEEccCCcCccccCc-cccCCCCCCEEEccCccCcccccCcCC----cccEEECCCCCCccccc
Q 005711 168 GGVFPGWVGNFSMNLEKLDFSFNSFCGEIPE-SLYYLKSLKHLDLEKNNLTGNVHDFYQ----SLLVLNLGSNRFSGTLP 242 (681)
Q Consensus 168 ~~~~p~~l~~l~~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~~~~~~----~L~~L~L~~n~l~~~~~ 242 (681)
....+..+..+ ++|+++++++|.+....+. .+..+..+..+...++.+....+..+. .++.|++++|+++. ++
T Consensus 92 ~~~~~~~~~~l-~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~-i~ 169 (242)
T d1xwdc1 92 LYINPEAFQNL-PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IH 169 (242)
T ss_dssp CEECTTSEECC-TTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-EC
T ss_pred ccccccccccc-ccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc-cc
Confidence 56666667777 7888888888887633221 233445555555566566554444332 25556666666653 23
Q ss_pred hhhccCCCCCEE-EccCCccccCCChhhcccCcccEEecCCCccccccCccccCCCCCcEEec
Q 005711 243 CFAASAMSLTVL-KLDNNSVVGGIPTCIASLQALTHLNLSHNHLNYEISPRLVFFEKLLLLDL 304 (681)
Q Consensus 243 ~~~~~~~~L~~L-~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 304 (681)
......++++++ .+++|+++...+..|.++++|++|++++|+++...+..+.++++|+.+++
T Consensus 170 ~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~ 232 (242)
T d1xwdc1 170 NCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 232 (242)
T ss_dssp TTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred cccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence 333333443333 34444454332333455555555555555555332333444444444333
No 20
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.65 E-value=2.2e-16 Score=146.77 Aligned_cols=171 Identities=23% Similarity=0.292 Sum_probs=105.1
Q ss_pred cEEEccCCCCcCCCcccccCCCCCCEEeccCCcccccc-ccccCCCCCCCEEEccCCcCccccCcccccCCCcceeeccc
Q 005711 327 VLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEI-PARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNN 405 (681)
Q Consensus 327 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~ 405 (681)
+.++.++++++ .+|..+. +++++|+|++|++++.+ +..|.++++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus 11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~ 87 (192)
T d1w8aa_ 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence 45666666666 4554442 45666666666665433 44456666666677666666666666666666666666666
Q ss_pred ccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchh-hhhcCCCCCEEEccCCcCcccC
Q 005711 406 NNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLND-AITKWTNLKYFSIARNKLSGNL 484 (681)
Q Consensus 406 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~ 484 (681)
|++....+..|.++++|+.|+|++|++++..+..|.++++|++++|++|.+...... ++. ..++.+.+..+.+....
T Consensus 88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~--~~l~~~~l~~~~~~c~~ 165 (192)
T d1w8aa_ 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGA 165 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCS
T ss_pred ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHh--hhhhhhcccCCCeEeCC
Confidence 666666666677777788888888888777777777788888888888877643221 111 12344455556665555
Q ss_pred CcccccCCccceeecccCccc
Q 005711 485 PNWLFSFQAIQMMDFSTNKFM 505 (681)
Q Consensus 485 p~~~~~l~~L~~L~ls~n~~~ 505 (681)
|.. +..++.++++.|++.
T Consensus 166 p~~---l~~~~l~~L~~n~l~ 183 (192)
T d1w8aa_ 166 PSK---VRDVQIKDLPHSEFK 183 (192)
T ss_dssp STT---TTTSBGGGSCTTTCC
T ss_pred Chh---hcCCEeeecCHhhCc
Confidence 543 344455566665554
No 21
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}
Probab=99.65 E-value=6.9e-16 Score=145.51 Aligned_cols=181 Identities=22% Similarity=0.327 Sum_probs=114.6
Q ss_pred EEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccc
Q 005711 329 LDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNL 408 (681)
Q Consensus 329 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l 408 (681)
..+..+.+++.++. ..+.+|++|++++|.++... .+..+++|++|++++|.+++..+
T Consensus 29 ~~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~~------------------- 85 (210)
T d1h6ta2 29 DNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP------------------- 85 (210)
T ss_dssp HHTTCSCTTSEECH--HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-------------------
T ss_pred HHhCcCccCCccCH--HHhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCccc-------------------
Confidence 35566666654442 23567777777777776432 36667777777777777664221
Q ss_pred cccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCccc
Q 005711 409 SGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWL 488 (681)
Q Consensus 409 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~ 488 (681)
++.+++|+.|++++|++++ +| .+.++++|+.|++++|.+.. + ..+..+++++.+++++|.+++ +..+
T Consensus 86 -------~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~--~~~~ 152 (210)
T d1h6ta2 86 -------LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD--ITVL 152 (210)
T ss_dssp -------GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC--CGGG
T ss_pred -------cccCccccccccccccccc-cc-cccccccccccccccccccc-c-ccccccccccccccccccccc--cccc
Confidence 3445566666666666653 33 35666667777777666652 2 245666777777777776653 3345
Q ss_pred ccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCCcCCCCCCCEEECCC
Q 005711 489 FSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSH 565 (681)
Q Consensus 489 ~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~ 565 (681)
..+++|+.+++++|+++ .++ .+.++++|++|+|++|+++ .+|.+.++++|+.|+|++
T Consensus 153 ~~l~~L~~l~l~~n~l~------------------~i~-~l~~l~~L~~L~Ls~N~i~-~l~~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 153 SRLTKLDTLSLEDNQIS------------------DIV-PLAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFS 209 (210)
T ss_dssp GGCTTCSEEECCSSCCC------------------CCG-GGTTCTTCCEEECCSSCCC-BCGGGTTCTTCSEEEEEE
T ss_pred ccccccccccccccccc------------------ccc-cccCCCCCCEEECCCCCCC-CChhhcCCCCCCEEEccC
Confidence 55666666666666554 222 2667788888888888887 466788888888888864
No 22
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}
Probab=99.65 E-value=1.2e-15 Score=142.57 Aligned_cols=141 Identities=26% Similarity=0.393 Sum_probs=79.8
Q ss_pred CCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccce
Q 005711 417 DALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQM 496 (681)
Q Consensus 417 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 496 (681)
..+++|++|++++|++++..| ++++++|++|++++|.+... + .+.++++|+.|++++|..... ..+..+++|+.
T Consensus 59 ~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~ 132 (199)
T d2omxa2 59 EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-T-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNR 132 (199)
T ss_dssp GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSE
T ss_pred ccCCCcCcCccccccccCccc--ccCCcccccccccccccccc-c-ccccccccccccccccccccc--cccchhhhhHH
Confidence 344555555555555554322 55555566666655555422 2 245555666666655555421 22444555555
Q ss_pred eecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCCcCCCCCCCEEECCCCcCcccCCccc
Q 005711 497 MDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQIPGNI 576 (681)
Q Consensus 497 L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~N~l~~~~p~~l 576 (681)
|++++|++. .+ +.+..+++|++|++++|++++ ++.++++++|+.|++++|++++ +| .+
T Consensus 133 L~l~~n~l~------------------~~-~~l~~~~~L~~L~l~~n~l~~-l~~l~~l~~L~~L~ls~N~i~~-i~-~l 190 (199)
T d2omxa2 133 LELSSNTIS------------------DI-SALSGLTSLQQLNFSSNQVTD-LKPLANLTTLERLDISSNKVSD-IS-VL 190 (199)
T ss_dssp EECCSSCCC------------------CC-GGGTTCTTCSEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCC-CG-GG
T ss_pred hhhhhhhhc------------------cc-ccccccccccccccccccccC-CccccCCCCCCEEECCCCCCCC-Cc-cc
Confidence 555555442 22 235566777777777777763 4456777777777777777764 33 36
Q ss_pred cCCCCCCeE
Q 005711 577 SSLQELTLL 585 (681)
Q Consensus 577 ~~l~~L~~L 585 (681)
+.+++|++|
T Consensus 191 ~~L~~L~~L 199 (199)
T d2omxa2 191 AKLTNLESL 199 (199)
T ss_dssp GGCTTCSEE
T ss_pred cCCCCCCcC
Confidence 667777654
No 23
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.64 E-value=4.2e-16 Score=144.86 Aligned_cols=128 Identities=19% Similarity=0.212 Sum_probs=71.6
Q ss_pred CEEeccCCccccccccccCCCCCCCEEEccCCcCcccc-CcccccCCCcceeecccccccccCccccCCCCCccEEEccc
Q 005711 351 QALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSI-PLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISN 429 (681)
Q Consensus 351 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 429 (681)
+.++.++++++ .+|..+. +++++|+|++|++++.+ +..|.++++|+.|++++|.+.+..+..+..+++|+.|++++
T Consensus 11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~ 87 (192)
T d1w8aa_ 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence 45666666665 4454442 45666666666665433 33445555555555555555555555555555555555555
Q ss_pred CcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCc
Q 005711 430 NQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLS 481 (681)
Q Consensus 430 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 481 (681)
|+++...+..|.++++|++|+|++|++++..+.+|..+++|++|+|++|.+.
T Consensus 88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~ 139 (192)
T d1w8aa_ 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence 5555544555555555555555555555544555555555555555555544
No 24
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}
Probab=99.62 E-value=3.1e-15 Score=139.75 Aligned_cols=178 Identities=26% Similarity=0.365 Sum_probs=104.2
Q ss_pred EEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeeccccc
Q 005711 328 LLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNN 407 (681)
Q Consensus 328 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~ 407 (681)
...++.+.+++.++ ...++++++|++++|.++. + +.+..+++|++|++++|++++..| +.
T Consensus 22 ~~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~-------------- 81 (199)
T d2omxa2 22 KTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LK-------------- 81 (199)
T ss_dssp HHHTTCSSTTSEEC--HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GT--------------
T ss_pred HHHhCCCCCCCccC--HHHhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--cc--------------
Confidence 34566777765443 2346678888888887763 2 346677777777777777764322 34
Q ss_pred ccccCccccCCCCCccEEEcccCcceeccccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcc
Q 005711 408 LSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNW 487 (681)
Q Consensus 408 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~ 487 (681)
++++|+.|++++|.+.. ++ .+.++++|+.+++++|.+... ..+..+++|+.|++++|++.. + +.
T Consensus 82 ----------~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~ 145 (199)
T d2omxa2 82 ----------NLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SA 145 (199)
T ss_dssp ----------TCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GG
T ss_pred ----------CCccccccccccccccc-cc-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhcc-c-cc
Confidence 44555555555555442 22 245555555555555555432 224455566666666665542 2 23
Q ss_pred cccCCccceeecccCccccCCCCCcccccCCccccccCCcccccccccceeecCCCcCcccCCCcCCCCCCCEE
Q 005711 488 LFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRAL 561 (681)
Q Consensus 488 ~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L 561 (681)
+..+++|+.|++++|++++ ++ .++++++|++|++++|+++ .++.+..+++|++|
T Consensus 146 l~~~~~L~~L~l~~n~l~~------------------l~-~l~~l~~L~~L~ls~N~i~-~i~~l~~L~~L~~L 199 (199)
T d2omxa2 146 LSGLTSLQQLNFSSNQVTD------------------LK-PLANLTTLERLDISSNKVS-DISVLAKLTNLESL 199 (199)
T ss_dssp GTTCTTCSEEECCSSCCCC------------------CG-GGTTCTTCCEEECCSSCCC-CCGGGGGCTTCSEE
T ss_pred ccccccccccccccccccC------------------Cc-cccCCCCCCEEECCCCCCC-CCccccCCCCCCcC
Confidence 4555555555555555432 22 3566778888888888877 35667777777765
No 25
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.55 E-value=3.3e-15 Score=147.87 Aligned_cols=34 Identities=21% Similarity=0.202 Sum_probs=18.0
Q ss_pred CCccEEEccCCcCccccCccccCCCCCCEEEccC
Q 005711 180 MNLEKLDFSFNSFCGEIPESLYYLKSLKHLDLEK 213 (681)
Q Consensus 180 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 213 (681)
++|++|++++|.+++..+..++.+++|++|++++
T Consensus 71 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~ 104 (284)
T d2astb2 71 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG 104 (284)
T ss_dssp CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred CCcccccccccCCCcHHHHHHhcCCCCcCccccc
Confidence 4455555555555444445555555555555555
No 26
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.51 E-value=8.7e-15 Score=144.73 Aligned_cols=161 Identities=22% Similarity=0.183 Sum_probs=74.0
Q ss_pred hhhccCCCCCEEEccCCccccCCChhhcccCcccEEecCCC-cccccc-CccccCCCCCcEEeccCCC-ccCC-CChhhh
Q 005711 243 CFAASAMSLTVLKLDNNSVVGGIPTCIASLQALTHLNLSHN-HLNYEI-SPRLVFFEKLLLLDLSFND-LSGP-LPSKIA 318 (681)
Q Consensus 243 ~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~-~~~l~~l~~L~~L~L~~n~-l~~~-~p~~~~ 318 (681)
..+..+++|++|+++++.+++..+..++.+++|++|++++| .++... ......+++|++|+++++. ++.. +...+.
T Consensus 65 ~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~ 144 (284)
T d2astb2 65 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA 144 (284)
T ss_dssp HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH
T ss_pred HHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhc
Confidence 34455666666666666655555555666666666666664 333211 1112345666666666542 2210 011111
Q ss_pred hcccCCCccEEEccCCC--CcCC-CcccccCCCCCCEEeccCCc-cccccccccCCCCCCCEEEccCC-cCccccCcccc
Q 005711 319 QTTEKAGLVLLDLSHNR--FSGE-IPLKITELKSLQALFLSNNL-LIGEIPARIGNLTYLQVIDLSHN-MLSGSIPLNIV 393 (681)
Q Consensus 319 ~~~~~~~L~~L~Ls~n~--l~~~-~p~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~ 393 (681)
.. .+.|+.|+++++. +++. +......+++|++|++++|. +++.....+.++++|++|++++| .+++.....+.
T Consensus 145 ~~--~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~ 222 (284)
T d2astb2 145 HV--SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG 222 (284)
T ss_dssp HS--CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG
T ss_pred cc--ccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHh
Confidence 11 1245556555432 2211 11222345555556655542 44444444555555555555553 34433333333
Q ss_pred cCCCcceeeccc
Q 005711 394 GCFQLLALIVNN 405 (681)
Q Consensus 394 ~~~~L~~L~l~~ 405 (681)
.+++|+.|++.+
T Consensus 223 ~~~~L~~L~l~~ 234 (284)
T d2astb2 223 EIPTLKTLQVFG 234 (284)
T ss_dssp GCTTCCEEECTT
T ss_pred cCCCCCEEeeeC
Confidence 444444444433
No 27
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=99.44 E-value=2.4e-14 Score=146.05 Aligned_cols=65 Identities=23% Similarity=0.236 Sum_probs=39.1
Q ss_pred ccccCCCCCCEEECCCCcCCcc----ccccccCCCCCCEEEccCCCCCCc---CC-------ccccCCCCCCEeeCCCC
Q 005711 100 PRLCKLSFLEFLVLSSNAFTGR----ISTCFGGLSGLKTLDLSYNKFVGV---VP-------DAIMKLRNLRELILKGN 164 (681)
Q Consensus 100 ~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~---~p-------~~~~~l~~L~~L~L~~n 164 (681)
..+.+.+.|++|+|++|.+... +...+...++|+.|+++++..... .| ..+..+++|++|++++|
T Consensus 25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n 103 (344)
T d2ca6a1 25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 103 (344)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc
Confidence 4456677788888888877543 344566777888888877654311 11 22334555666666555
No 28
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.42 E-value=2.9e-13 Score=115.00 Aligned_cols=70 Identities=36% Similarity=0.395 Sum_probs=40.1
Q ss_pred cCCcccccccccceeecCCCcCcccCCCcCCCCCCCEEECCCCcCcccC-CccccCCCCCCeEecccCccee
Q 005711 524 TIPKGLFQLQGLEYLNLSFNFLDGQVPGLYRLRSLRALDLSHNSLTGQI-PGNISSLQELTLLNLSYNSFSG 594 (681)
Q Consensus 524 ~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls~N~l~~ 594 (681)
.+|+.++.+++|+.|++++|+++ .+|.+..+++|+.|++++|+++... ...+..+++|+++++++|++++
T Consensus 34 ~lp~~~~~l~~L~~L~l~~N~i~-~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~ 104 (124)
T d1dcea3 34 ALPPALAALRCLEVLQASDNALE-NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104 (124)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCC-CCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred cchhhhhhhhccccccccccccc-ccCccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence 44455555666666666666665 3445556666666666666665332 1345556666666666666553
No 29
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=99.42 E-value=8.9e-14 Score=141.77 Aligned_cols=254 Identities=19% Similarity=0.200 Sum_probs=116.5
Q ss_pred cchhhccCCCCCEEEccCCccccC----CChhhcccCcccEEecCCCccccc----------cCccccCCCCCcEEeccC
Q 005711 241 LPCFAASAMSLTVLKLDNNSVVGG----IPTCIASLQALTHLNLSHNHLNYE----------ISPRLVFFEKLLLLDLSF 306 (681)
Q Consensus 241 ~~~~~~~~~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----------~~~~l~~l~~L~~L~L~~ 306 (681)
+...+.....++.|+|++|.+... +...+...++|+.++++++..... +...+..+++|+.|++++
T Consensus 23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~ 102 (344)
T d2ca6a1 23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 102 (344)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence 344555667777777777766432 222344556677777665543211 111233345555555555
Q ss_pred CCccCCCChhhhh-cccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCc
Q 005711 307 NDLSGPLPSKIAQ-TTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLS 385 (681)
Q Consensus 307 n~l~~~~p~~~~~-~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 385 (681)
|.++..-...+.. +...++|+.|++++|.+.......++. .+..+ .........+.|+.+++++|.+.
T Consensus 103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~--~l~~~---------~~~~~~~~~~~L~~l~l~~n~i~ 171 (344)
T d2ca6a1 103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--ALQEL---------AVNKKAKNAPPLRSIICGRNRLE 171 (344)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--HHHHH---------HHHHHHHTCCCCCEEECCSSCCT
T ss_pred cccccccccchhhhhcccccchheecccccccccccccccc--ccccc---------ccccccccCcccceeeccccccc
Confidence 5554332211111 112224555555555443110000000 00000 00000012334455555554443
Q ss_pred cc----cCcccccCCCcceeeccccccccc-----CccccCCCCCccEEEcccCcceec----cccccCCCCCCcEEECC
Q 005711 386 GS----IPLNIVGCFQLLALIVNNNNLSGE-----IQPELDALDSLKILDISNNQISGE----IPLTLAGLKSLEIVDFS 452 (681)
Q Consensus 386 ~~----~p~~~~~~~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~ 452 (681)
.. +...+..++.++.+++++|.+... +...+..+++|+.|++++|.++.. +...+..+++|++|+++
T Consensus 172 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls 251 (344)
T d2ca6a1 172 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 251 (344)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred ccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhh
Confidence 21 111223344455555555544321 122344566677777777766432 23445566777777777
Q ss_pred CCcCCCcch----hhhhc--CCCCCEEEccCCcCcccC----Ccccc-cCCccceeecccCccc
Q 005711 453 SNNLSGSLN----DAITK--WTNLKYFSIARNKLSGNL----PNWLF-SFQAIQMMDFSTNKFM 505 (681)
Q Consensus 453 ~n~l~~~~~----~~~~~--l~~L~~L~L~~n~l~~~~----p~~~~-~l~~L~~L~ls~n~~~ 505 (681)
+|.+++... ..+.. .+.|++|++++|++.... ...+. +.+.|+.|++++|++.
T Consensus 252 ~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~ 315 (344)
T d2ca6a1 252 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315 (344)
T ss_dssp TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred cCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence 777664322 22222 345777777777765321 22221 3556666666666654
No 30
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.38 E-value=8.5e-13 Score=112.03 Aligned_cols=101 Identities=23% Similarity=0.331 Sum_probs=53.2
Q ss_pred EEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccCCCCCcccccCCccccccCCc
Q 005711 448 IVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMDLSDNLLHGTIPK 527 (681)
Q Consensus 448 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~Ls~N~l~g~ip~ 527 (681)
+|++++|+++ .++ .+..+++|++|++++|+++ .+|+.+..+++|+.|++++|.++ .+|
T Consensus 2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~------------------~l~- 59 (124)
T d1dcea3 2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE------------------NVD- 59 (124)
T ss_dssp EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC------------------CCG-
T ss_pred EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc------------------ccC-
Confidence 4455555554 222 2444555555555555554 34444455555555555554443 222
Q ss_pred ccccccccceeecCCCcCcccCC-C-cCCCCCCCEEECCCCcCcc
Q 005711 528 GLFQLQGLEYLNLSFNFLDGQVP-G-LYRLRSLRALDLSHNSLTG 570 (681)
Q Consensus 528 ~l~~l~~L~~L~Ls~N~l~~~ip-~-~~~l~~L~~L~Ls~N~l~~ 570 (681)
.+..+++|++|++++|+++.... . +..+++|+.|++++|.++.
T Consensus 60 ~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~ 104 (124)
T d1dcea3 60 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104 (124)
T ss_dssp GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence 35556666666666666664322 2 5566677777777776653
No 31
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.36 E-value=6.8e-13 Score=118.55 Aligned_cols=109 Identities=25% Similarity=0.158 Sum_probs=42.1
Q ss_pred CCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEE
Q 005711 346 ELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKIL 425 (681)
Q Consensus 346 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 425 (681)
+...+++|+|++|+++. ++..+..+++|+.|++++|.++. ++ .+..+++|++|++++|.++...+..+..+++|+.|
T Consensus 16 n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L 92 (162)
T d1a9na_ 16 NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 92 (162)
T ss_dssp CTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCc-cC-CcccCcchhhhhcccccccCCCccccccccccccc
Confidence 33344444444444442 23333334444444444444432 11 12222233333333333322222222334444444
Q ss_pred EcccCcceeccc-cccCCCCCCcEEECCCCcCC
Q 005711 426 DISNNQISGEIP-LTLAGLKSLEIVDFSSNNLS 457 (681)
Q Consensus 426 ~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~ 457 (681)
++++|++..... ..+..+++|+++++++|.++
T Consensus 93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~ 125 (162)
T d1a9na_ 93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 125 (162)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred eeccccccccccccccccccccchhhcCCCccc
Confidence 444444432111 23444445555555555443
No 32
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.34 E-value=1.2e-12 Score=116.86 Aligned_cols=129 Identities=20% Similarity=0.191 Sum_probs=105.2
Q ss_pred cCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCCCCccEEEcccCcceeccccccCCCCCCc
Q 005711 368 IGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDALDSLKILDISNNQISGEIPLTLAGLKSLE 447 (681)
Q Consensus 368 l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 447 (681)
+.+..++++|+|++|+++. ++..+..+++|+.|++++|.+... +.+..+++|+.|++++|+++...+..+..+++|+
T Consensus 14 ~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~ 90 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 90 (162)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred ccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccc
Confidence 5677889999999999984 566667889999999999999854 3578899999999999999976666667899999
Q ss_pred EEECCCCcCCCcch-hhhhcCCCCCEEEccCCcCcccCC----cccccCCccceeecc
Q 005711 448 IVDFSSNNLSGSLN-DAITKWTNLKYFSIARNKLSGNLP----NWLFSFQAIQMMDFS 500 (681)
Q Consensus 448 ~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~ls 500 (681)
+|++++|+++.... ..+..+++|++|++++|.++. .| ..+..+++|+.||.+
T Consensus 91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD~~ 147 (162)
T d1a9na_ 91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQ 147 (162)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTE
T ss_pred cceeccccccccccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeCCC
Confidence 99999999974322 467889999999999999874 33 346778888888743
No 33
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=99.15 E-value=5.2e-13 Score=123.74 Aligned_cols=129 Identities=25% Similarity=0.322 Sum_probs=76.7
Q ss_pred cccccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcCcccCCcccccCCccceeecccCccccCCCCCcccc
Q 005711 436 IPLTLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKLSGNLPNWLFSFQAIQMMDFSTNKFMGFIPDAVGMD 515 (681)
Q Consensus 436 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~L~ 515 (681)
++..+..+++|++|++++|+++. ++ .+..+++|++|++++|.++ .+|.....++.|+.|++++|+++
T Consensus 40 l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~---------- 106 (198)
T d1m9la_ 40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA---------- 106 (198)
T ss_dssp CHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC----------
T ss_pred hhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccccccccccccc----------
Confidence 34455566666666666666653 33 3556666666666666665 34443444445555555555443
Q ss_pred cCCccccccCCcccccccccceeecCCCcCcccC--CCcCCCCCCCEEECCCCcCcccCCcc----------ccCCCCCC
Q 005711 516 LSDNLLHGTIPKGLFQLQGLEYLNLSFNFLDGQV--PGLYRLRSLRALDLSHNSLTGQIPGN----------ISSLQELT 583 (681)
Q Consensus 516 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~i--p~~~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~ 583 (681)
.+ +.+..+++|+.|++++|+++... ..+..+++|+.|++++|.+....+.. +..+++|+
T Consensus 107 --------~l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~ 177 (198)
T d1m9la_ 107 --------SL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK 177 (198)
T ss_dssp --------CH-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCC
T ss_pred --------cc-ccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcC
Confidence 22 23566777777777777776432 22666777777777777776544432 44567777
Q ss_pred eEe
Q 005711 584 LLN 586 (681)
Q Consensus 584 ~L~ 586 (681)
.||
T Consensus 178 ~LD 180 (198)
T d1m9la_ 178 KLD 180 (198)
T ss_dssp EES
T ss_pred EeC
Confidence 765
No 34
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.11 E-value=2.4e-10 Score=100.95 Aligned_cols=92 Identities=21% Similarity=0.098 Sum_probs=68.3
Q ss_pred ccccccCCCCCCEEECCCC-cCCccccccccCCCCCCEEEccCCCCCCcCCccccCCCCCCEeeCCCCCCCCccCCchhc
Q 005711 98 VHPRLCKLSFLEFLVLSSN-AFTGRISTCFGGLSGLKTLDLSYNKFVGVVPDAIMKLRNLRELILKGNPELGGVFPGWVG 176 (681)
Q Consensus 98 ~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~~~~~~~p~~l~ 176 (681)
.|..+..+++|++|++++| .++...+..|.++++|++|++++|+++...|.+|.++++|++|+|++|++ . .+|....
T Consensus 23 ~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l-~-~l~~~~~ 100 (156)
T d2ifga3 23 SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL-E-SLSWKTV 100 (156)
T ss_dssp TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC-S-CCCSTTT
T ss_pred CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCC-c-ccChhhh
Confidence 4566788889999999766 58877778899999999999999999987788898888888888888843 2 3333333
Q ss_pred cccCCccEEEccCCcC
Q 005711 177 NFSMNLEKLDFSFNSF 192 (681)
Q Consensus 177 ~l~~~L~~L~L~~n~l 192 (681)
.. .+|++|+|++|.+
T Consensus 101 ~~-~~l~~L~L~~Np~ 115 (156)
T d2ifga3 101 QG-LSLQELVLSGNPL 115 (156)
T ss_dssp CS-CCCCEEECCSSCC
T ss_pred cc-ccccccccCCCcc
Confidence 33 3455666665554
No 35
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=99.11 E-value=1e-12 Score=121.70 Aligned_cols=113 Identities=25% Similarity=0.298 Sum_probs=55.0
Q ss_pred CcccccCCCCCCEEeccCCccccccccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCC
Q 005711 340 IPLKITELKSLQALFLSNNLLIGEIPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDAL 419 (681)
Q Consensus 340 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 419 (681)
+|..+..+++|++|+|++|+++. ++ .+.++++|++|++++|.++ .+|.....+++|+.|++++|.++.. ..+..+
T Consensus 40 l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l 114 (198)
T d1m9la_ 40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKL 114 (198)
T ss_dssp CHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHHH
T ss_pred hhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccccccccccccccc--cccccc
Confidence 34445555666666666666553 22 3555666666666666554 2333333333444455544444431 123344
Q ss_pred CCccEEEcccCcceeccc-cccCCCCCCcEEECCCCcCC
Q 005711 420 DSLKILDISNNQISGEIP-LTLAGLKSLEIVDFSSNNLS 457 (681)
Q Consensus 420 ~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~ 457 (681)
++|+.|++++|+++.... ..+..+++|++|++++|++.
T Consensus 115 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~ 153 (198)
T d1m9la_ 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred ccccccccccchhccccccccccCCCccceeecCCCccc
Confidence 455555555555543211 23445555555555555443
No 36
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.06 E-value=2e-10 Score=101.37 Aligned_cols=42 Identities=24% Similarity=0.225 Sum_probs=16.7
Q ss_pred ccCCCCCCcEEECCCCcCCCcchhhhhcCCCCCEEEccCCcC
Q 005711 439 TLAGLKSLEIVDFSSNNLSGSLNDAITKWTNLKYFSIARNKL 480 (681)
Q Consensus 439 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 480 (681)
.|.++++|+.|++++|+++...+.+|..+++|++|+|++|++
T Consensus 51 ~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l 92 (156)
T d2ifga3 51 DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (156)
T ss_dssp GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred hhccccccCcceeeccccCCcccccccccccccceeccCCCC
Confidence 334444444444444444333333333344444444444433
No 37
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.17 E-value=9.2e-08 Score=84.52 Aligned_cols=59 Identities=25% Similarity=0.168 Sum_probs=33.9
Q ss_pred cccccccccceeecCCCcCcccCCC--cCCCCCCCEEECCCCcCcccCCcc-------ccCCCCCCeEe
Q 005711 527 KGLFQLQGLEYLNLSFNFLDGQVPG--LYRLRSLRALDLSHNSLTGQIPGN-------ISSLQELTLLN 586 (681)
Q Consensus 527 ~~l~~l~~L~~L~Ls~N~l~~~ip~--~~~l~~L~~L~Ls~N~l~~~~p~~-------l~~l~~L~~L~ 586 (681)
..+..+++|+.|+|++|+++. ++. ......|+.|++++|.+++..... +..+++|+.||
T Consensus 85 ~~~~~l~~L~~L~Ls~N~i~~-l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD 152 (162)
T d1koha1 85 SIVQKAPNLKILNLSGNELKS-ERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD 152 (162)
T ss_dssp THHHHSTTCCCCCCTTSCCCC-GGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred HHHhhCCcccccccccCcccc-chhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence 344556677777777777663 333 223345677777777766544322 34566676664
No 38
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.87 E-value=7.6e-07 Score=78.39 Aligned_cols=66 Identities=30% Similarity=0.297 Sum_probs=28.9
Q ss_pred cCCCCCcEEeccCCCccCCC--ChhhhhcccCCCccEEEccCCCCcCCCcccccCCCCCCEEeccCCcccc
Q 005711 294 VFFEKLLLLDLSFNDLSGPL--PSKIAQTTEKAGLVLLDLSHNRFSGEIPLKITELKSLQALFLSNNLLIG 362 (681)
Q Consensus 294 ~~l~~L~~L~L~~n~l~~~~--p~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 362 (681)
..+++|++|+|++|+++..- +..+..+. +|+.|++++|.++..-+..+.....|+.|++++|.+..
T Consensus 62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~---~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~ 129 (162)
T d1koha1 62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAP---NLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD 129 (162)
T ss_dssp HHCTTCCCCCCCSSCCCCCSGGGTHHHHST---TCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred HhCCCCCEeeCCCccccCCchhHHHHhhCC---cccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence 34555555555555554321 11122222 45555555555553222122223345555555555543
No 39
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=97.46 E-value=5.5e-05 Score=66.40 Aligned_cols=61 Identities=18% Similarity=0.123 Sum_probs=32.4
Q ss_pred CCCccEEEcccCcceec----cccccCCCCCCcEEECCCCcCCCc-------chhhhhcCCCCCEEEccCCc
Q 005711 419 LDSLKILDISNNQISGE----IPLTLAGLKSLEIVDFSSNNLSGS-------LNDAITKWTNLKYFSIARNK 479 (681)
Q Consensus 419 l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~L~~n~ 479 (681)
.+.|+.|++++|.+++. +-..+...++|++|++++|.+... +...+...++|+.|+++.+.
T Consensus 71 n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~ 142 (167)
T d1pgva_ 71 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 142 (167)
T ss_dssp CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred cccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence 44566666666655533 123445556666666666654321 23334445666666665543
No 40
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=97.19 E-value=9.7e-05 Score=64.74 Aligned_cols=89 Identities=13% Similarity=0.064 Sum_probs=62.1
Q ss_pred ccCCCCCccEEEcccCcceecc----ccccCCCCCCcEEECCCCcCCCc----chhhhhcCCCCCEEEccCCcCccc---
Q 005711 415 ELDALDSLKILDISNNQISGEI----PLTLAGLKSLEIVDFSSNNLSGS----LNDAITKWTNLKYFSIARNKLSGN--- 483 (681)
Q Consensus 415 ~~~~l~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~--- 483 (681)
.+...+.|+.|++++|.+.... ...+...+.|++|++++|.++.. +-.++...++|++|++++|.+...
T Consensus 39 ~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~ 118 (167)
T d1pgva_ 39 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ 118 (167)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred HHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHH
Confidence 3456678888999988886432 23445678899999999998843 234566678899999998865421
Q ss_pred ----CCcccccCCccceeecccCc
Q 005711 484 ----LPNWLFSFQAIQMMDFSTNK 503 (681)
Q Consensus 484 ----~p~~~~~l~~L~~L~ls~n~ 503 (681)
+...+...++|+.|+++.+.
T Consensus 119 ~~~~l~~~L~~n~sL~~l~l~~~~ 142 (167)
T d1pgva_ 119 VEMDMMMAIEENESLLRVGISFAS 142 (167)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHHhCCCccEeeCcCCC
Confidence 23444556788888876553
No 41
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=96.72 E-value=0.00058 Score=59.50 Aligned_cols=64 Identities=14% Similarity=0.139 Sum_probs=32.1
Q ss_pred CCCCccEEEccc-Ccceec----cccccCCCCCCcEEECCCCcCCCc----chhhhhcCCCCCEEEccCCcCc
Q 005711 418 ALDSLKILDISN-NQISGE----IPLTLAGLKSLEIVDFSSNNLSGS----LNDAITKWTNLKYFSIARNKLS 481 (681)
Q Consensus 418 ~l~~L~~L~Ls~-n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~ 481 (681)
+.+.|+.|++++ +.++.. +-..+...++|++|++++|.++.. +...+...++++.+++++|.+.
T Consensus 15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~ 87 (166)
T d1io0a_ 15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 87 (166)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence 345566666655 334322 223344556666666666665532 2223344556666666665554
No 42
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=96.36 E-value=0.00073 Score=58.82 Aligned_cols=115 Identities=19% Similarity=0.223 Sum_probs=52.4
Q ss_pred cCCCCCCEEeccC-Cccccc----cccccCCCCCCCEEEccCCcCccccCcccccCCCcceeecccccccccCccccCCC
Q 005711 345 TELKSLQALFLSN-NLLIGE----IPARIGNLTYLQVIDLSHNMLSGSIPLNIVGCFQLLALIVNNNNLSGEIQPELDAL 419 (681)
Q Consensus 345 ~~l~~L~~L~L~~-n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 419 (681)
.+.+.|++|++++ +.++.. +...+...+.|++|++++|.+.......+ ...+...
T Consensus 14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L--------------------~~~l~~~ 73 (166)
T d1io0a_ 14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFAL--------------------AEMLKVN 73 (166)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHH--------------------HHHHHHC
T ss_pred hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHH--------------------HHHHhhc
Confidence 3445666666665 233221 22233455556666666665543221111 1112233
Q ss_pred CCccEEEcccCcceec----cccccCCCCCCcEEEC--CCCcCCC----cchhhhhcCCCCCEEEccCCc
Q 005711 420 DSLKILDISNNQISGE----IPLTLAGLKSLEIVDF--SSNNLSG----SLNDAITKWTNLKYFSIARNK 479 (681)
Q Consensus 420 ~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L--~~n~l~~----~~~~~~~~l~~L~~L~L~~n~ 479 (681)
++++.+++++|.+... +...+...++|+.++| ++|.+.. .+...+...++|+.|+++.+.
T Consensus 74 ~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 74 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 143 (166)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred ccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence 4555566655555432 2233445555655443 3344432 123334455566666655443
Done!