Query 005712
Match_columns 681
No_of_seqs 525 out of 3763
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 12:36:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005712.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005712hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0117 Heterogeneous nuclear 100.0 2.6E-45 5.6E-50 374.9 37.1 262 147-419 80-342 (506)
2 TIGR01648 hnRNP-R-Q heterogene 100.0 2.4E-41 5.2E-46 374.5 41.7 247 149-407 57-306 (578)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.5E-41 3.2E-46 366.5 28.8 255 149-408 2-349 (352)
4 TIGR01628 PABP-1234 polyadenyl 100.0 2.6E-36 5.6E-41 345.1 27.2 246 151-405 1-258 (562)
5 TIGR01628 PABP-1234 polyadenyl 100.0 2E-35 4.3E-40 337.8 32.3 253 149-407 87-363 (562)
6 KOG0145 RNA-binding protein EL 100.0 1.1E-35 2.3E-40 284.4 22.0 254 149-407 40-357 (360)
7 KOG0127 Nucleolar protein fibr 100.0 6E-34 1.3E-38 297.3 22.8 252 149-408 4-378 (678)
8 TIGR01622 SF-CC1 splicing fact 100.0 2.3E-33 4.9E-38 313.3 27.6 247 147-405 86-445 (457)
9 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 7.9E-33 1.7E-37 309.0 27.3 239 149-407 1-350 (481)
10 KOG0144 RNA-binding protein CU 100.0 5.8E-33 1.3E-37 283.0 19.8 258 150-412 34-508 (510)
11 TIGR01642 U2AF_lg U2 snRNP aux 100.0 2.4E-32 5.2E-37 309.3 27.2 246 146-405 171-499 (509)
12 KOG0148 Apoptosis-promoting RN 100.0 4.2E-32 9E-37 261.9 21.9 226 148-410 4-240 (321)
13 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 4.6E-31 9.9E-36 294.9 26.0 238 150-405 96-477 (481)
14 TIGR01659 sex-lethal sex-letha 100.0 7.8E-31 1.7E-35 277.7 25.7 168 147-406 104-271 (346)
15 TIGR01645 half-pint poly-U bin 100.0 1.7E-30 3.6E-35 288.5 29.1 164 144-314 101-281 (612)
16 KOG0123 Polyadenylate-binding 100.0 9.6E-28 2.1E-32 255.4 19.7 237 151-404 2-242 (369)
17 KOG0127 Nucleolar protein fibr 100.0 2.8E-29 6.1E-34 262.4 7.5 200 146-399 288-566 (678)
18 KOG0123 Polyadenylate-binding 99.9 2.9E-27 6.2E-32 251.7 18.1 243 152-406 78-347 (369)
19 TIGR01645 half-pint poly-U bin 99.9 1.3E-24 2.8E-29 241.6 19.7 170 230-406 107-282 (612)
20 KOG0124 Polypyrimidine tract-b 99.9 2.1E-24 4.6E-29 215.6 18.4 255 143-404 106-531 (544)
21 KOG0147 Transcriptional coacti 99.9 3.4E-25 7.4E-30 233.9 11.6 245 148-405 177-525 (549)
22 KOG0110 RNA-binding protein (R 99.9 2.2E-24 4.7E-29 233.4 16.8 250 147-408 382-693 (725)
23 KOG4212 RNA-binding protein hn 99.9 2.4E-23 5.1E-28 212.6 20.7 145 149-298 43-279 (608)
24 KOG0148 Apoptosis-promoting RN 99.9 3E-24 6.5E-29 207.7 13.1 154 150-316 62-237 (321)
25 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 1.9E-23 4E-28 225.5 19.0 166 230-407 3-168 (352)
26 KOG0117 Heterogeneous nuclear 99.9 1.4E-21 3.1E-26 201.1 28.8 163 228-407 81-247 (506)
27 TIGR01648 hnRNP-R-Q heterogene 99.9 2.2E-22 4.8E-27 223.7 21.5 190 149-353 137-366 (578)
28 KOG0144 RNA-binding protein CU 99.9 3.1E-23 6.7E-28 212.2 12.8 167 230-405 34-201 (510)
29 TIGR01622 SF-CC1 splicing fact 99.9 1.5E-22 3.1E-27 226.3 19.4 171 228-406 87-264 (457)
30 KOG4211 Splicing factor hnRNP- 99.9 8.3E-20 1.8E-24 190.9 26.4 245 147-402 7-352 (510)
31 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.2E-20 2.6E-25 213.8 19.1 169 226-406 171-373 (509)
32 KOG0145 RNA-binding protein EL 99.8 1.1E-20 2.3E-25 181.7 11.9 165 228-404 39-203 (360)
33 KOG0131 Splicing factor 3b, su 99.8 7.6E-21 1.6E-25 174.5 9.6 164 149-318 8-178 (203)
34 KOG0109 RNA-binding protein LA 99.8 1.3E-20 2.7E-25 184.4 9.4 154 152-328 4-161 (346)
35 KOG0131 Splicing factor 3b, su 99.8 4.5E-20 9.8E-25 169.4 11.4 169 228-407 7-176 (203)
36 KOG0109 RNA-binding protein LA 99.8 4E-20 8.8E-25 180.9 10.6 151 231-411 3-153 (346)
37 KOG4205 RNA-binding protein mu 99.8 1.1E-18 2.3E-23 179.7 21.5 174 149-410 5-178 (311)
38 KOG0146 RNA-binding protein ET 99.8 6.1E-20 1.3E-24 177.2 11.1 184 219-407 2-364 (371)
39 KOG0110 RNA-binding protein (R 99.8 3.2E-19 6.9E-24 193.7 15.9 226 145-406 222-596 (725)
40 KOG0124 Polypyrimidine tract-b 99.8 7.5E-19 1.6E-23 176.1 11.5 169 231-406 114-288 (544)
41 PLN03134 glycine-rich RNA-bind 99.7 3.3E-17 7.1E-22 152.6 14.7 83 325-407 31-113 (144)
42 KOG0147 Transcriptional coacti 99.7 1.9E-17 4E-22 175.7 8.3 177 226-410 175-360 (549)
43 KOG1190 Polypyrimidine tract-b 99.7 1.3E-15 2.8E-20 155.6 16.7 249 148-417 26-382 (492)
44 KOG0105 Alternative splicing f 99.6 6.6E-15 1.4E-19 135.4 15.8 160 229-405 5-185 (241)
45 KOG0120 Splicing factor U2AF, 99.6 6E-15 1.3E-19 159.1 15.5 242 149-404 174-488 (500)
46 KOG0146 RNA-binding protein ET 99.6 1.7E-15 3.7E-20 146.6 9.9 163 149-319 18-367 (371)
47 KOG4211 Splicing factor hnRNP- 99.6 6.3E-14 1.4E-18 147.2 19.3 160 231-403 11-177 (510)
48 PLN03134 glycine-rich RNA-bind 99.6 4.6E-15 1E-19 138.2 9.3 81 149-229 33-113 (144)
49 KOG4206 Spliceosomal protein s 99.6 3.3E-14 7.2E-19 136.4 15.2 206 149-404 8-218 (221)
50 KOG0105 Alternative splicing f 99.6 1.3E-14 2.9E-19 133.5 11.5 140 148-300 4-175 (241)
51 KOG1456 Heterogeneous nuclear 99.5 3.7E-13 8E-18 136.2 19.4 240 145-405 26-360 (494)
52 KOG1548 Transcription elongati 99.5 1.4E-13 3E-18 138.5 15.3 198 149-405 133-349 (382)
53 KOG0113 U1 small nuclear ribon 99.5 2.2E-13 4.8E-18 134.6 11.9 99 326-424 99-197 (335)
54 KOG1365 RNA-binding protein Fu 99.5 2.3E-13 4.9E-18 138.1 12.0 252 143-403 53-357 (508)
55 KOG1190 Polypyrimidine tract-b 99.5 1.8E-12 4E-17 132.8 18.6 235 151-406 151-489 (492)
56 PF00076 RRM_1: RNA recognitio 99.4 4.1E-13 8.9E-18 108.9 9.0 70 331-401 1-70 (70)
57 KOG0149 Predicted RNA-binding 99.4 2.1E-13 4.5E-18 131.1 8.2 86 327-413 11-96 (247)
58 PF00076 RRM_1: RNA recognitio 99.4 2.3E-13 4.9E-18 110.4 7.3 70 153-223 1-70 (70)
59 KOG0149 Predicted RNA-binding 99.4 3E-13 6.4E-18 130.0 7.8 77 150-227 12-88 (247)
60 KOG0107 Alternative splicing f 99.4 2E-12 4.3E-17 118.7 12.0 73 328-405 10-82 (195)
61 KOG0106 Alternative splicing f 99.4 2.8E-13 6.2E-18 131.5 5.7 149 231-402 2-165 (216)
62 TIGR01659 sex-lethal sex-letha 99.4 8.3E-13 1.8E-17 140.5 9.4 81 326-406 105-185 (346)
63 KOG4207 Predicted splicing fac 99.4 7E-13 1.5E-17 124.4 7.7 80 327-406 12-91 (256)
64 PF14259 RRM_6: RNA recognitio 99.4 4.5E-12 9.8E-17 103.1 9.5 70 331-401 1-70 (70)
65 KOG0122 Translation initiation 99.3 1.8E-12 3.9E-17 125.0 8.1 80 327-406 188-267 (270)
66 KOG4212 RNA-binding protein hn 99.3 1.4E-11 3.1E-16 127.0 14.7 169 227-404 41-290 (608)
67 PF14259 RRM_6: RNA recognitio 99.3 2.4E-12 5.1E-17 104.8 6.9 69 153-222 1-69 (70)
68 KOG0122 Translation initiation 99.3 2.2E-12 4.7E-17 124.4 7.3 81 149-229 188-268 (270)
69 KOG0126 Predicted RNA-binding 99.3 1.7E-13 3.6E-18 126.1 -0.5 82 146-227 31-112 (219)
70 KOG0125 Ataxin 2-binding prote 99.3 4.7E-12 1E-16 126.7 8.6 83 324-408 92-174 (376)
71 KOG0121 Nuclear cap-binding pr 99.3 4.2E-12 9.1E-17 110.4 6.7 83 145-227 31-113 (153)
72 COG0724 RNA-binding proteins ( 99.3 2.2E-11 4.8E-16 125.5 13.5 169 150-388 115-285 (306)
73 PLN03120 nucleic acid binding 99.3 7E-12 1.5E-16 125.0 8.5 76 150-229 4-79 (260)
74 PLN03120 nucleic acid binding 99.3 1.2E-11 2.6E-16 123.3 9.9 78 328-409 4-81 (260)
75 KOG1457 RNA binding protein (c 99.3 2.5E-11 5.4E-16 115.3 11.4 160 230-396 34-274 (284)
76 KOG0113 U1 small nuclear ribon 99.3 6.1E-12 1.3E-16 124.5 7.5 79 148-226 99-177 (335)
77 KOG0121 Nuclear cap-binding pr 99.3 7.3E-12 1.6E-16 109.0 6.7 79 327-405 35-113 (153)
78 KOG4207 Predicted splicing fac 99.3 6.7E-12 1.5E-16 117.9 6.5 81 147-227 10-90 (256)
79 KOG1457 RNA binding protein (c 99.3 3.7E-11 8E-16 114.2 11.2 146 149-301 33-274 (284)
80 KOG0106 Alternative splicing f 99.3 5.6E-12 1.2E-16 122.5 5.7 138 151-311 2-165 (216)
81 KOG0126 Predicted RNA-binding 99.2 1.6E-12 3.6E-17 119.7 1.5 84 328-411 35-118 (219)
82 KOG0130 RNA-binding protein RB 99.2 2.3E-11 5.1E-16 106.7 8.0 86 322-407 66-151 (170)
83 PLN03121 nucleic acid binding 99.2 3E-11 6.4E-16 118.5 8.6 77 149-229 4-80 (243)
84 PLN03213 repressor of silencin 99.2 3.6E-11 7.7E-16 125.7 9.0 76 327-406 9-86 (759)
85 PLN03213 repressor of silencin 99.2 3E-11 6.4E-16 126.3 8.2 77 149-229 9-87 (759)
86 smart00362 RRM_2 RNA recogniti 99.2 6.7E-11 1.5E-15 95.3 8.6 71 330-402 1-71 (72)
87 smart00360 RRM RNA recognition 99.2 8.2E-11 1.8E-15 94.4 8.4 70 333-402 1-70 (71)
88 smart00362 RRM_2 RNA recogniti 99.2 8E-11 1.7E-15 94.9 8.3 71 152-224 1-71 (72)
89 KOG0114 Predicted RNA-binding 99.2 1.3E-10 2.8E-15 97.6 9.3 76 327-405 17-92 (124)
90 KOG0107 Alternative splicing f 99.2 3.2E-11 7E-16 110.8 6.1 75 149-228 9-83 (195)
91 KOG0111 Cyclophilin-type pepti 99.1 2.4E-11 5.2E-16 115.0 3.7 81 327-407 9-89 (298)
92 smart00360 RRM RNA recognition 99.1 1.4E-10 3.1E-15 93.0 7.8 70 155-224 1-70 (71)
93 PLN03121 nucleic acid binding 99.1 1.7E-10 3.6E-15 113.3 9.6 76 327-406 4-79 (243)
94 KOG0114 Predicted RNA-binding 99.1 1.1E-10 2.4E-15 97.9 7.0 77 149-228 17-93 (124)
95 KOG0125 Ataxin 2-binding prote 99.1 7.5E-11 1.6E-15 118.2 6.7 79 149-229 95-173 (376)
96 KOG0130 RNA-binding protein RB 99.1 5.4E-11 1.2E-15 104.4 4.8 83 145-227 67-149 (170)
97 KOG1456 Heterogeneous nuclear 99.1 8.4E-09 1.8E-13 105.0 19.6 164 230-411 31-198 (494)
98 smart00361 RRM_1 RNA recogniti 99.1 3.3E-10 7.2E-15 92.2 7.6 61 342-402 2-69 (70)
99 cd00590 RRM RRM (RNA recogniti 99.1 6.8E-10 1.5E-14 89.9 9.4 73 330-403 1-73 (74)
100 KOG0128 RNA-binding protein SA 99.1 2.5E-11 5.4E-16 135.2 0.6 225 149-404 570-811 (881)
101 KOG0116 RasGAP SH3 binding pro 99.0 1.1E-09 2.4E-14 117.5 11.3 77 328-405 288-364 (419)
102 KOG0415 Predicted peptidyl pro 99.0 4E-10 8.6E-15 113.7 7.3 87 142-228 231-317 (479)
103 cd00590 RRM RRM (RNA recogniti 99.0 9.5E-10 2.1E-14 89.0 8.2 73 152-225 1-73 (74)
104 COG0724 RNA-binding proteins ( 99.0 8E-10 1.7E-14 113.8 9.4 79 328-406 115-193 (306)
105 KOG0108 mRNA cleavage and poly 99.0 5.4E-10 1.2E-14 120.6 6.9 79 151-229 19-97 (435)
106 KOG0108 mRNA cleavage and poly 99.0 6.6E-10 1.4E-14 119.9 7.5 81 329-409 19-99 (435)
107 KOG0111 Cyclophilin-type pepti 99.0 2E-10 4.3E-15 108.8 3.0 82 148-229 8-89 (298)
108 PF13893 RRM_5: RNA recognitio 99.0 2.5E-09 5.5E-14 82.8 8.2 56 345-405 1-56 (56)
109 KOG4210 Nuclear localization s 99.0 1.2E-09 2.7E-14 112.8 7.7 175 148-404 86-260 (285)
110 smart00361 RRM_1 RNA recogniti 98.9 1.8E-09 3.8E-14 87.9 6.7 61 164-224 2-69 (70)
111 KOG0120 Splicing factor U2AF, 98.9 3.4E-09 7.3E-14 115.1 10.7 158 149-315 288-490 (500)
112 KOG4307 RNA binding protein RB 98.9 4.2E-08 9E-13 107.0 17.8 141 147-293 308-494 (944)
113 KOG4660 Protein Mei2, essentia 98.9 5E-09 1.1E-13 112.5 10.0 74 145-223 70-143 (549)
114 KOG4208 Nucleolar RNA-binding 98.8 7.4E-09 1.6E-13 98.2 7.3 79 327-405 48-127 (214)
115 KOG4454 RNA binding protein (R 98.8 1.4E-09 3.1E-14 103.3 2.1 138 148-298 7-148 (267)
116 KOG0415 Predicted peptidyl pro 98.8 5.8E-09 1.3E-13 105.5 6.2 85 326-410 237-321 (479)
117 KOG1365 RNA-binding protein Fu 98.8 1.1E-08 2.5E-13 104.4 7.9 147 149-299 160-348 (508)
118 PF13893 RRM_5: RNA recognitio 98.8 1E-08 2.2E-13 79.4 4.7 55 167-226 1-55 (56)
119 KOG0129 Predicted RNA-binding 98.7 1.2E-07 2.7E-12 101.2 13.4 157 230-389 259-432 (520)
120 KOG4307 RNA binding protein RB 98.7 5.7E-08 1.2E-12 106.0 10.1 76 329-404 868-943 (944)
121 KOG4661 Hsp27-ERE-TATA-binding 98.7 3.3E-08 7.1E-13 105.3 7.0 82 147-228 402-483 (940)
122 KOG0128 RNA-binding protein SA 98.7 1.3E-09 2.9E-14 121.7 -4.0 149 149-316 666-814 (881)
123 KOG0132 RNA polymerase II C-te 98.7 2E-08 4.3E-13 111.1 5.1 112 136-253 407-529 (894)
124 KOG0129 Predicted RNA-binding 98.6 2.8E-07 6.1E-12 98.5 12.5 143 147-293 256-431 (520)
125 KOG4208 Nucleolar RNA-binding 98.6 5.5E-08 1.2E-12 92.3 5.9 76 149-224 48-124 (214)
126 KOG4205 RNA-binding protein mu 98.5 5.6E-08 1.2E-12 100.8 4.4 81 327-408 5-85 (311)
127 KOG0132 RNA polymerase II C-te 98.5 2.1E-07 4.4E-12 103.3 7.1 76 326-407 419-494 (894)
128 KOG4206 Spliceosomal protein s 98.5 2.6E-07 5.6E-12 89.4 6.9 80 328-410 9-92 (221)
129 KOG0112 Large RNA-binding prot 98.5 1.1E-07 2.4E-12 107.1 5.0 169 138-318 360-532 (975)
130 KOG4661 Hsp27-ERE-TATA-binding 98.5 2E-07 4.3E-12 99.5 6.6 80 327-406 404-483 (940)
131 KOG1995 Conserved Zn-finger pr 98.5 4.8E-06 1E-10 85.7 16.0 83 327-409 65-155 (351)
132 KOG0226 RNA-binding proteins [ 98.4 1.7E-07 3.7E-12 91.4 4.5 165 231-403 97-265 (290)
133 KOG0112 Large RNA-binding prot 98.4 1.7E-07 3.7E-12 105.5 4.9 158 229-407 371-530 (975)
134 KOG0153 Predicted RNA-binding 98.4 7.8E-07 1.7E-11 90.6 7.4 74 326-405 226-300 (377)
135 KOG0153 Predicted RNA-binding 98.4 5.4E-07 1.2E-11 91.7 6.1 79 145-229 223-302 (377)
136 KOG0533 RRM motif-containing p 98.4 4E-06 8.6E-11 83.8 11.9 81 328-409 83-163 (243)
137 KOG4454 RNA binding protein (R 98.4 2.8E-07 6E-12 88.0 3.5 139 227-393 6-148 (267)
138 KOG0226 RNA-binding proteins [ 98.3 4.5E-07 9.8E-12 88.5 4.3 158 150-315 96-268 (290)
139 KOG0533 RRM motif-containing p 98.3 1.4E-06 3.1E-11 86.9 7.0 79 148-227 81-159 (243)
140 KOG4676 Splicing factor, argin 98.3 4.7E-07 1E-11 93.1 3.4 208 150-399 7-217 (479)
141 KOG4209 Splicing factor RNPS1, 98.3 3E-06 6.5E-11 84.9 9.0 81 327-408 100-180 (231)
142 KOG4209 Splicing factor RNPS1, 98.2 1.8E-06 3.8E-11 86.6 4.9 82 145-227 96-177 (231)
143 PF04059 RRM_2: RNA recognitio 98.2 7.5E-06 1.6E-10 70.2 7.9 68 151-218 2-71 (97)
144 PF04059 RRM_2: RNA recognitio 98.2 9.6E-06 2.1E-10 69.6 8.6 69 329-397 2-72 (97)
145 KOG0116 RasGAP SH3 binding pro 98.1 2.7E-06 5.9E-11 91.7 6.0 73 149-222 287-359 (419)
146 KOG2193 IGF-II mRNA-binding pr 98.1 4.6E-07 9.9E-12 93.9 -0.1 153 231-406 2-155 (584)
147 KOG4849 mRNA cleavage factor I 98.1 6.3E-05 1.4E-09 76.5 14.9 76 328-403 80-157 (498)
148 KOG3152 TBP-binding protein, a 97.9 9.3E-06 2E-10 79.7 4.7 74 149-222 73-158 (278)
149 KOG1548 Transcription elongati 97.9 2.7E-05 5.9E-10 79.5 7.1 77 328-405 134-218 (382)
150 KOG0151 Predicted splicing reg 97.8 2.6E-05 5.5E-10 86.2 6.6 79 149-227 173-254 (877)
151 PF08777 RRM_3: RNA binding mo 97.8 2.9E-05 6.2E-10 68.2 5.4 70 329-404 2-76 (105)
152 KOG0921 Dosage compensation co 97.8 0.00011 2.5E-09 83.5 11.1 14 272-285 899-912 (1282)
153 KOG4660 Protein Mei2, essentia 97.8 1.2E-05 2.5E-10 87.1 2.9 71 326-401 73-143 (549)
154 KOG1995 Conserved Zn-finger pr 97.6 5.4E-05 1.2E-09 78.1 4.9 81 149-229 65-153 (351)
155 KOG0151 Predicted splicing reg 97.6 9.7E-05 2.1E-09 81.7 6.3 82 327-408 173-257 (877)
156 PF11608 Limkain-b1: Limkain b 97.5 0.00019 4.1E-09 58.8 5.9 68 151-228 3-75 (90)
157 PF11608 Limkain-b1: Limkain b 97.5 0.00028 6E-09 57.9 6.2 67 329-405 3-74 (90)
158 KOG2193 IGF-II mRNA-binding pr 97.4 3.4E-05 7.3E-10 80.4 0.0 148 151-314 2-154 (584)
159 COG5175 MOT2 Transcriptional r 97.3 0.00028 6.1E-09 71.7 4.5 79 149-227 113-200 (480)
160 KOG4210 Nuclear localization s 97.2 0.00021 4.6E-09 74.2 3.4 80 149-229 183-263 (285)
161 PF08777 RRM_3: RNA binding mo 97.2 0.00065 1.4E-08 59.7 5.3 58 151-214 2-59 (105)
162 KOG4849 mRNA cleavage factor I 97.1 0.00047 1E-08 70.4 3.8 75 149-223 79-155 (498)
163 KOG2318 Uncharacterized conser 97.1 0.0026 5.7E-08 69.4 9.7 119 145-300 169-293 (650)
164 KOG2314 Translation initiation 96.9 0.003 6.4E-08 68.7 8.3 71 148-219 56-132 (698)
165 PF14605 Nup35_RRM_2: Nup53/35 96.9 0.0024 5.1E-08 48.6 5.5 53 150-209 1-53 (53)
166 KOG0115 RNA-binding protein p5 96.8 0.0029 6.3E-08 62.6 6.3 94 287-397 6-99 (275)
167 KOG2314 Translation initiation 96.7 0.0024 5.2E-08 69.4 5.6 75 328-403 58-139 (698)
168 COG5175 MOT2 Transcriptional r 96.7 0.0036 7.8E-08 63.8 6.5 78 328-405 114-200 (480)
169 KOG1855 Predicted RNA-binding 96.7 0.045 9.8E-07 58.0 14.6 67 327-393 230-309 (484)
170 KOG3973 Uncharacterized conser 96.6 0.017 3.7E-07 59.3 11.1 8 237-244 156-163 (465)
171 KOG0115 RNA-binding protein p5 96.5 0.0031 6.7E-08 62.4 4.6 104 204-312 6-109 (275)
172 KOG1855 Predicted RNA-binding 96.4 0.0034 7.4E-08 66.2 4.4 66 148-213 229-307 (484)
173 PF14605 Nup35_RRM_2: Nup53/35 96.2 0.0085 1.8E-07 45.6 4.5 52 329-387 2-53 (53)
174 KOG1996 mRNA splicing factor [ 96.2 0.011 2.4E-07 59.5 6.3 63 342-404 300-363 (378)
175 KOG2202 U2 snRNP splicing fact 96.1 0.0025 5.4E-08 63.2 1.5 62 343-405 83-145 (260)
176 KOG2202 U2 snRNP splicing fact 95.9 0.0027 5.8E-08 63.0 1.0 59 165-224 83-142 (260)
177 KOG3152 TBP-binding protein, a 95.8 0.0071 1.5E-07 59.9 3.2 72 328-399 74-157 (278)
178 PF08952 DUF1866: Domain of un 95.6 0.032 7E-07 51.3 6.5 56 343-407 51-106 (146)
179 PF05172 Nup35_RRM: Nup53/35/4 95.6 0.033 7.2E-07 48.3 6.2 72 149-222 5-83 (100)
180 KOG2416 Acinus (induces apopto 95.5 0.02 4.4E-07 62.8 5.7 65 146-216 440-505 (718)
181 PF05172 Nup35_RRM: Nup53/35/4 95.4 0.062 1.3E-06 46.6 7.2 72 328-401 6-84 (100)
182 PRK11634 ATP-dependent RNA hel 95.2 0.098 2.1E-06 60.9 10.5 58 339-405 498-560 (629)
183 KOG1999 RNA polymerase II tran 94.7 0.11 2.4E-06 60.6 8.6 26 190-215 208-233 (1024)
184 PF10309 DUF2414: Protein of u 94.3 0.12 2.7E-06 40.4 5.6 55 328-390 5-62 (62)
185 KOG4676 Splicing factor, argin 94.3 0.052 1.1E-06 56.8 4.4 75 329-404 8-85 (479)
186 PF08952 DUF1866: Domain of un 94.2 0.067 1.5E-06 49.2 4.6 69 149-226 26-103 (146)
187 KOG1996 mRNA splicing factor [ 93.5 0.16 3.5E-06 51.3 6.2 74 150-223 281-360 (378)
188 PF08675 RNA_bind: RNA binding 92.5 0.44 9.5E-06 39.5 6.3 55 150-213 9-63 (87)
189 PF10309 DUF2414: Protein of u 92.4 0.57 1.2E-05 36.7 6.5 54 151-212 6-62 (62)
190 PF03467 Smg4_UPF3: Smg-4/UPF3 91.9 0.42 9.1E-06 46.1 6.6 72 328-399 7-84 (176)
191 KOG2416 Acinus (induces apopto 91.8 0.11 2.4E-06 57.2 2.7 75 324-404 440-518 (718)
192 PF03467 Smg4_UPF3: Smg-4/UPF3 91.6 0.23 4.9E-06 48.0 4.3 74 148-221 5-84 (176)
193 KOG2068 MOT2 transcription fac 91.0 0.16 3.5E-06 52.7 2.8 78 149-226 76-159 (327)
194 PF07576 BRAP2: BRCA1-associat 90.7 1.8 3.9E-05 38.3 8.7 68 328-397 13-81 (110)
195 KOG2591 c-Mpl binding protein, 89.6 0.85 1.8E-05 50.2 6.9 72 327-405 174-249 (684)
196 PF08675 RNA_bind: RNA binding 88.7 1.6 3.5E-05 36.2 6.3 55 329-392 10-64 (87)
197 KOG1999 RNA polymerase II tran 88.5 1.6 3.4E-05 51.4 8.4 25 274-298 209-233 (1024)
198 PF04147 Nop14: Nop14-like fam 87.1 0.59 1.3E-05 56.3 4.2 22 154-175 414-439 (840)
199 PF15023 DUF4523: Protein of u 86.6 1.5 3.3E-05 40.0 5.5 69 329-405 87-159 (166)
200 KOG4483 Uncharacterized conser 86.4 1.4 3E-05 46.6 5.8 65 149-221 390-455 (528)
201 PF15023 DUF4523: Protein of u 86.0 2.2 4.7E-05 39.0 6.1 66 142-214 78-147 (166)
202 PF07576 BRAP2: BRCA1-associat 85.6 4.1 9E-05 36.0 7.7 68 150-219 13-81 (110)
203 KOG2591 c-Mpl binding protein, 85.2 2.7 5.9E-05 46.4 7.6 86 203-296 148-233 (684)
204 KOG2135 Proteins containing th 83.4 0.62 1.3E-05 50.4 1.8 76 149-231 371-447 (526)
205 PF04847 Calcipressin: Calcipr 82.7 2 4.3E-05 41.7 4.9 59 341-405 8-68 (184)
206 PF10446 DUF2457: Protein of u 80.4 1.8 3.8E-05 46.9 3.9 11 150-160 121-131 (458)
207 KOG2253 U1 snRNP complex, subu 80.1 0.96 2.1E-05 51.0 1.9 71 325-404 37-107 (668)
208 KOG2318 Uncharacterized conser 79.7 5.4 0.00012 44.5 7.3 83 324-406 170-304 (650)
209 PF03880 DbpA: DbpA RNA bindin 79.4 6.4 0.00014 32.0 6.1 57 339-404 12-73 (74)
210 KOG2068 MOT2 transcription fac 78.9 1 2.2E-05 46.9 1.5 76 329-404 78-159 (327)
211 KOG2135 Proteins containing th 78.8 1.2 2.5E-05 48.3 1.9 73 328-407 372-445 (526)
212 KOG2253 U1 snRNP complex, subu 76.8 1.7 3.6E-05 49.2 2.5 69 148-225 38-106 (668)
213 PF04931 DNA_pol_phi: DNA poly 76.7 3.7 7.9E-05 49.4 5.6 7 167-173 741-747 (784)
214 KOG0804 Cytoplasmic Zn-finger 76.0 7.2 0.00016 42.3 6.8 68 150-219 74-142 (493)
215 PF04847 Calcipressin: Calcipr 75.4 5.5 0.00012 38.7 5.4 57 163-225 8-66 (184)
216 KOG4285 Mitotic phosphoprotein 74.8 7.5 0.00016 40.0 6.2 64 150-221 197-260 (350)
217 PF10446 DUF2457: Protein of u 74.7 2.4 5.2E-05 45.9 2.9 9 29-37 25-33 (458)
218 KOG0804 Cytoplasmic Zn-finger 74.4 5.9 0.00013 42.9 5.7 68 328-397 74-142 (493)
219 PF11767 SET_assoc: Histone ly 74.3 10 0.00022 30.2 5.7 54 339-401 11-64 (66)
220 KOG0262 RNA polymerase I, larg 73.7 4.6 0.0001 48.8 5.1 22 152-173 1443-1464(1640)
221 PF04202 Mfp-3: Foot protein 3 72.8 7.2 0.00016 30.5 4.3 50 624-679 3-53 (71)
222 KOG1924 RhoA GTPase effector D 72.4 17 0.00037 42.1 8.9 13 200-212 207-219 (1102)
223 PF07292 NID: Nmi/IFP 35 domai 71.3 4.6 0.0001 34.1 3.3 72 278-350 1-74 (88)
224 COG5593 Nucleic-acid-binding p 70.4 3.7 8.1E-05 45.2 3.2 21 151-171 799-819 (821)
225 PF11767 SET_assoc: Histone ly 70.1 13 0.00029 29.5 5.5 53 161-222 11-63 (66)
226 KOG4574 RNA-binding protein (c 70.0 2.2 4.8E-05 49.4 1.4 55 157-217 305-359 (1007)
227 PF07292 NID: Nmi/IFP 35 domai 67.1 3.1 6.6E-05 35.2 1.3 58 195-252 1-74 (88)
228 KOG4574 RNA-binding protein (c 66.7 4.1 9E-05 47.3 2.7 71 330-406 300-372 (1007)
229 KOG0943 Predicted ubiquitin-pr 66.0 4.7 0.0001 48.4 3.0 11 573-583 2317-2327(3015)
230 COG5638 Uncharacterized conser 64.6 24 0.00053 37.7 7.6 39 147-185 143-186 (622)
231 PF04931 DNA_pol_phi: DNA poly 64.3 8 0.00017 46.5 4.7 11 161-171 728-738 (784)
232 KOG4285 Mitotic phosphoprotein 63.5 12 0.00026 38.5 5.0 64 328-399 197-260 (350)
233 PF12782 Innate_immun: Inverte 63.2 1.5E+02 0.0033 28.8 12.2 8 610-617 235-242 (311)
234 PF04094 DUF390: Protein of un 63.1 1E+02 0.0022 35.9 12.4 19 571-589 146-167 (828)
235 KOG3262 H/ACA small nucleolar 62.4 18 0.00038 34.6 5.5 11 350-360 96-106 (215)
236 PF04094 DUF390: Protein of un 61.6 1.7E+02 0.0038 34.1 13.9 16 336-351 7-22 (828)
237 PF03880 DbpA: DbpA RNA bindin 60.4 18 0.00039 29.3 4.8 57 161-226 12-73 (74)
238 KOG2295 C2H2 Zn-finger protein 58.4 2.3 5.1E-05 46.9 -1.1 73 148-220 229-301 (648)
239 KOG2038 CAATT-binding transcri 55.3 4.7 0.0001 46.5 0.6 15 152-166 957-971 (988)
240 PRK10590 ATP-dependent RNA hel 54.0 1.1E+02 0.0025 34.1 11.4 9 330-338 316-324 (456)
241 PF05918 API5: Apoptosis inhib 52.3 4.7 0.0001 45.8 0.0 9 200-208 237-245 (556)
242 KOG0262 RNA polymerase I, larg 47.7 13 0.00028 45.3 2.6 9 345-353 1542-1550(1640)
243 COG4907 Predicted membrane pro 45.7 37 0.00081 37.1 5.4 20 273-292 415-434 (595)
244 PF10567 Nab6_mRNP_bdg: RNA-re 44.7 3.9E+02 0.0084 27.9 12.1 157 230-391 15-212 (309)
245 KOG2147 Nucleolar protein invo 41.6 39 0.00084 39.3 5.0 18 158-175 388-409 (823)
246 KOG2141 Protein involved in hi 40.8 15 0.00032 42.4 1.6 13 336-348 552-564 (822)
247 KOG4410 5-formyltetrahydrofola 40.8 60 0.0013 33.2 5.7 48 152-204 332-379 (396)
248 KOG3262 H/ACA small nucleolar 40.5 90 0.002 30.0 6.4 7 347-353 96-102 (215)
249 PF02724 CDC45: CDC45-like pro 39.7 48 0.001 38.8 5.6 10 285-294 401-410 (622)
250 PF09073 BUD22: BUD22; InterP 39.4 21 0.00045 39.7 2.6 22 379-400 408-429 (432)
251 PF05285 SDA1: SDA1; InterPro 38.5 18 0.00038 38.6 1.7 6 163-168 191-196 (324)
252 KOG2891 Surface glycoprotein [ 37.9 52 0.0011 33.4 4.8 87 276-362 76-195 (445)
253 PF10567 Nab6_mRNP_bdg: RNA-re 37.2 42 0.0009 34.7 4.0 59 149-207 14-79 (309)
254 PRK11634 ATP-dependent RNA hel 36.1 81 0.0017 37.0 6.8 11 379-389 500-510 (629)
255 KOG4410 5-formyltetrahydrofola 36.0 52 0.0011 33.7 4.4 47 328-380 330-377 (396)
256 PF07530 PRE_C2HC: Associated 35.7 48 0.001 26.5 3.4 61 165-228 2-63 (68)
257 KOG2295 C2H2 Zn-finger protein 35.5 8.9 0.00019 42.6 -1.1 70 328-397 231-300 (648)
258 KOG2141 Protein involved in hi 34.8 43 0.00093 38.8 4.0 26 373-398 624-649 (822)
259 PRK14548 50S ribosomal protein 33.6 1.4E+02 0.0031 25.0 6.0 55 154-211 24-80 (84)
260 PF03468 XS: XS domain; Inter 33.2 46 0.001 29.7 3.3 50 329-381 9-67 (116)
261 COG4547 CobT Cobalamin biosynt 32.9 31 0.00067 37.8 2.4 19 148-166 314-332 (620)
262 smart00596 PRE_C2HC PRE_C2HC d 31.8 64 0.0014 25.9 3.4 61 165-228 2-63 (69)
263 PRK10590 ATP-dependent RNA hel 31.1 1.3E+02 0.0029 33.5 7.4 6 370-375 342-347 (456)
264 KOG4019 Calcineurin-mediated s 30.5 39 0.00084 32.4 2.4 71 329-405 11-87 (193)
265 PF03468 XS: XS domain; Inter 30.4 60 0.0013 29.0 3.5 51 152-205 10-69 (116)
266 PF02714 DUF221: Domain of unk 29.9 62 0.0014 34.2 4.3 57 195-253 1-57 (325)
267 PF01524 Gemini_V1: Geminiviru 29.4 15 0.00033 29.9 -0.4 49 602-652 8-63 (78)
268 KOG4213 RNA-binding protein La 28.0 66 0.0014 30.8 3.4 56 151-211 112-169 (205)
269 PF02724 CDC45: CDC45-like pro 27.4 70 0.0015 37.4 4.3 13 282-294 401-413 (622)
270 PF05767 Pox_A14: Poxvirus vir 27.3 36 0.00077 28.7 1.4 21 614-634 28-53 (92)
271 KOG4434 Molecular chaperone SE 27.1 1.2E+02 0.0026 32.3 5.5 16 7-22 262-277 (520)
272 KOG4483 Uncharacterized conser 26.5 98 0.0021 33.3 4.7 62 327-396 390-452 (528)
273 COG5271 MDN1 AAA ATPase contai 26.1 35 0.00076 43.8 1.6 22 370-391 4408-4429(4600)
274 PF14111 DUF4283: Domain of un 25.9 71 0.0015 29.4 3.4 97 161-265 28-138 (153)
275 TIGR03636 L23_arch archaeal ri 24.9 2.7E+02 0.0059 22.9 6.2 56 153-211 16-73 (77)
276 PF15513 DUF4651: Domain of un 24.1 1.5E+02 0.0033 23.3 4.2 36 165-201 9-44 (62)
277 KOG0526 Nucleosome-binding fac 23.6 88 0.0019 35.1 3.9 7 157-163 534-540 (615)
278 KOG4008 rRNA processing protei 22.7 65 0.0014 32.2 2.5 37 145-181 35-71 (261)
279 KOG2773 Apoptosis antagonizing 22.2 68 0.0015 35.2 2.7 10 395-404 444-453 (483)
280 PF15360 Apelin: APJ endogenou 22.2 54 0.0012 24.4 1.3 15 588-603 41-55 (55)
281 PTZ00438 gamete antigen 27/25- 21.4 37 0.0008 34.3 0.5 12 374-385 349-360 (374)
282 KOG3871 Cell adhesion complex 21.2 63 0.0014 34.3 2.1 10 231-240 236-245 (449)
283 COG5193 LHP1 La protein, small 21.0 37 0.0008 36.5 0.4 63 148-210 172-244 (438)
284 COG5638 Uncharacterized conser 20.9 1.9E+02 0.004 31.3 5.5 79 326-404 144-292 (622)
285 TIGR02542 B_forsyth_147 Bacter 20.1 2.9E+02 0.0063 24.5 5.6 107 158-285 11-129 (145)
No 1
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.6e-45 Score=374.85 Aligned_cols=262 Identities=31% Similarity=0.511 Sum_probs=243.6
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCee-eccccCCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI-CGKRCGTA 225 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l-~Gr~i~v~ 225 (681)
....+.|||+.||.++.|++|.-||++.|+|-++||++|+.+|.+||||||.|++++.|++|++.||+..| .||.|.|.
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 35789999999999999999999999999999999999999999999999999999999999999999877 59999999
Q ss_pred CCCCCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCC
Q 005712 226 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 305 (681)
Q Consensus 226 ~~~~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~ 305 (681)
.+.++++|||+|||.++++++|.+.+++.++ +|++|.|...+.+..+++|||||+|.++..|..|-+.|-...+.+ .
T Consensus 160 ~Svan~RLFiG~IPK~k~keeIlee~~kVte-GVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~kl--w 236 (506)
T KOG0117|consen 160 VSVANCRLFIGNIPKTKKKEEILEEMKKVTE-GVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKL--W 236 (506)
T ss_pred EeeecceeEeccCCccccHHHHHHHHHhhCC-CeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceee--c
Confidence 9999999999999999999999999999997 899999999999999999999999999999999998877666544 5
Q ss_pred CccceecccCCCCCCChhhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHH
Q 005712 306 ERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVA 385 (681)
Q Consensus 306 gr~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~ 385 (681)
+..+.|.||.+........+...+.|||+||+.++|++.|+++|++||.|++|+.++| ||||.|.+.++|.+
T Consensus 237 gn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davk 308 (506)
T KOG0117|consen 237 GNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVK 308 (506)
T ss_pred CCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999877 89999999999999
Q ss_pred HHHHhCCceecCCeeEEEEEeccCCCCCCCCCCC
Q 005712 386 CINAINNKEFSDGNSKVKLRARLSNPMPKTQAVK 419 (681)
Q Consensus 386 Ai~~lng~~~~g~~i~v~~~~~~~~~~~~~~~~~ 419 (681)
|++.|||++|.|..|.|.+++...+....+...+
T Consensus 309 Am~~~ngkeldG~~iEvtLAKP~~k~k~~r~~~~ 342 (506)
T KOG0117|consen 309 AMKETNGKELDGSPIEVTLAKPVDKKKKERKAMR 342 (506)
T ss_pred HHHHhcCceecCceEEEEecCChhhhccchhhhh
Confidence 9999999999999999998877766555443333
No 2
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=2.4e-41 Score=374.49 Aligned_cols=247 Identities=31% Similarity=0.513 Sum_probs=220.9
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeee-ccccCCCCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVIC-GKRCGTAPS 227 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~-Gr~i~v~~~ 227 (681)
..++|||+|||.+++|++|+++|++||.|.+|+|++| .+++++|||||+|.+.++|++||+.||+..|. ++.|.|..+
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 4589999999999999999999999999999999999 88999999999999999999999999998885 888899999
Q ss_pred CCCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCCc
Q 005712 228 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307 (681)
Q Consensus 228 ~~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr 307 (681)
..+++|||+|||.++++++|.+.|.+++. .+..+.++......++++|||||+|.++++|.+|++.|+...+.+ .++
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~e-gvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l--~Gr 212 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTE-GVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQL--WGH 212 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccC-CceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEe--cCc
Confidence 99999999999999999999999999875 355555554444567889999999999999999999887554322 478
Q ss_pred cceecccCCCCCCChhhcccceeeeecCCCCCCCHHHHHhhhccc--CcEEEEEEeecCCCCCcceEEEEEeCCHHHHHH
Q 005712 308 TVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVA 385 (681)
Q Consensus 308 ~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~--G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~ 385 (681)
.|.|.|+.+............++|||+||++++|+++|+++|++| |.|+.|.++ ++||||+|++.++|.+
T Consensus 213 ~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~k 284 (578)
T TIGR01648 213 VIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVK 284 (578)
T ss_pred eEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHH
Confidence 999999998877666666677899999999999999999999999 999999875 3599999999999999
Q ss_pred HHHHhCCceecCCeeEEEEEec
Q 005712 386 CINAINNKEFSDGNSKVKLRAR 407 (681)
Q Consensus 386 Ai~~lng~~~~g~~i~v~~~~~ 407 (681)
||+.||+..|.|+.|+|.++..
T Consensus 285 Ai~~lnG~~i~Gr~I~V~~Akp 306 (578)
T TIGR01648 285 AMDELNGKELEGSEIEVTLAKP 306 (578)
T ss_pred HHHHhCCCEECCEEEEEEEccC
Confidence 9999999999999999988744
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=1.5e-41 Score=366.54 Aligned_cols=255 Identities=22% Similarity=0.386 Sum_probs=223.7
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~ 228 (681)
+..+|||+|||.++|+++|+++|++||+|.+|+|++++.+|+++|||||+|.+.++|.+||+.|++..|.|+.|.|..+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999986654
Q ss_pred ------CCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeee
Q 005712 229 ------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVF 302 (681)
Q Consensus 229 ------~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~ 302 (681)
..++|||+|||..+++++|+.+|..+|. |..++++.+. .++.++|||||+|.+.++|..|++.|++..+.
T Consensus 82 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~--i~~~~~~~~~-~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~- 157 (352)
T TIGR01661 82 PSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQ--IITSRILSDN-VTGLSKGVGFIRFDKRDEADRAIKTLNGTTPS- 157 (352)
T ss_pred ccccccccceEEECCccccCCHHHHHHHHhccCC--EEEEEEEecC-CCCCcCcEEEEEECCHHHHHHHHHHhCCCccC-
Confidence 3568999999999999999999999998 9999998873 57789999999999999999999999997652
Q ss_pred CCCCccceecccCCCCCCCh------------------------------------------------------------
Q 005712 303 GHPERTVKVAFAEPLREPDP------------------------------------------------------------ 322 (681)
Q Consensus 303 g~~gr~l~v~~a~~~~~~~~------------------------------------------------------------ 322 (681)
+ ....|.|.++........
T Consensus 158 g-~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (352)
T TIGR01661 158 G-CTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVA 236 (352)
T ss_pred C-CceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccc
Confidence 1 235566666542221000
Q ss_pred ---------------------------hhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEE
Q 005712 323 ---------------------------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFI 375 (681)
Q Consensus 323 ---------------------------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV 375 (681)
.......+|||+|||+.+++++|+++|++||.|+.|+|+++..++.++|||||
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV 316 (352)
T TIGR01661 237 QQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFV 316 (352)
T ss_pred cccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEE
Confidence 00011236999999999999999999999999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHhCCceecCCeeEEEEEecc
Q 005712 376 DFSTHEAAVACINAINNKEFSDGNSKVKLRARL 408 (681)
Q Consensus 376 ~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~~ 408 (681)
+|.+.++|.+||.+|||..|.|+.|+|.++...
T Consensus 317 ~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~ 349 (352)
T TIGR01661 317 SMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNK 349 (352)
T ss_pred EECCHHHHHHHHHHhCCCEECCeEEEEEEccCC
Confidence 999999999999999999999999999987554
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=2.6e-36 Score=345.09 Aligned_cols=246 Identities=23% Similarity=0.438 Sum_probs=221.5
Q ss_pred CEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCCC-
Q 005712 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED- 229 (681)
Q Consensus 151 ~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~~- 229 (681)
.+|||+|||.++||++|+++|++||+|++|+|++|..|++++|||||+|.+.++|++||+.+++..|.|+.|+|.++..
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 3799999999999999999999999999999999999999999999999999999999999999999999999977642
Q ss_pred -------CCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeee
Q 005712 230 -------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVF 302 (681)
Q Consensus 230 -------~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~ 302 (681)
..+|||+||+.++++++|+++|+.+|. |..|+++.+ .++.++|||||+|.+.++|.+|+..|++..+
T Consensus 81 ~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~--i~~~~i~~~--~~g~skg~afV~F~~~e~A~~Ai~~lng~~~-- 154 (562)
T TIGR01628 81 PSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGN--ILSCKVATD--ENGKSRGYGFVHFEKEESAKAAIQKVNGMLL-- 154 (562)
T ss_pred ccccccCCCceEEcCCCccCCHHHHHHHHHhcCC--cceeEeeec--CCCCcccEEEEEECCHHHHHHHHHHhcccEe--
Confidence 367999999999999999999999998 999999887 4788999999999999999999999999877
Q ss_pred CCCCccceecccCCCCCCChhhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHH
Q 005712 303 GHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEA 382 (681)
Q Consensus 303 g~~gr~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~ 382 (681)
.++.|.|.................++|||+||+.++|+++|+++|++||.|..+.|+.+. ++.++|||||+|.+.++
T Consensus 155 --~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~ 231 (562)
T TIGR01628 155 --NDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHED 231 (562)
T ss_pred --cCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHH
Confidence 578888876554433322233446789999999999999999999999999999999884 78999999999999999
Q ss_pred HHHHHHHhCCceec----CCeeEEEEE
Q 005712 383 AVACINAINNKEFS----DGNSKVKLR 405 (681)
Q Consensus 383 A~~Ai~~lng~~~~----g~~i~v~~~ 405 (681)
|.+|++.||+..|. |+.+.|...
T Consensus 232 A~~Av~~l~g~~i~~~~~g~~l~v~~a 258 (562)
T TIGR01628 232 AAKAVEEMNGKKIGLAKEGKKLYVGRA 258 (562)
T ss_pred HHHHHHHhCCcEecccccceeeEeecc
Confidence 99999999999999 888777643
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=2e-35 Score=337.81 Aligned_cols=253 Identities=19% Similarity=0.396 Sum_probs=223.8
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC-
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS- 227 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~- 227 (681)
...+|||+|||.++|+++|+++|++||.|.+|+|+++ .+++++|||||+|.+.++|.+|++.|++..+.++.|.|...
T Consensus 87 ~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~ 165 (562)
T TIGR01628 87 GVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATD-ENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFI 165 (562)
T ss_pred CCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeec-CCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccc
Confidence 3468999999999999999999999999999999998 57889999999999999999999999999999998876432
Q ss_pred ----------CCCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 005712 228 ----------EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQK 297 (681)
Q Consensus 228 ----------~~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g 297 (681)
...++|||+||+.++|+++|+++|+.||. |..+.++.+ .++.++|||||+|.+.++|.+|+..|++
T Consensus 166 ~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~--i~~~~i~~~--~~g~~~G~afV~F~~~e~A~~Av~~l~g 241 (562)
T TIGR01628 166 KKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGE--ITSAAVMKD--GSGRSRGFAFVNFEKHEDAAKAVEEMNG 241 (562)
T ss_pred cccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCC--EEEEEEEEC--CCCCcccEEEEEECCHHHHHHHHHHhCC
Confidence 22467999999999999999999999998 999999987 4788999999999999999999999999
Q ss_pred CCeeeCCCCccceecccCCCCCCCh-------------hhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecC
Q 005712 298 PDVVFGHPERTVKVAFAEPLREPDP-------------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNM 364 (681)
Q Consensus 298 ~~~~~g~~gr~l~v~~a~~~~~~~~-------------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~ 364 (681)
..+.....++.+.|.++..+..... ......++|||+||+..+|+++|+++|++||.|+.|.|+.+
T Consensus 242 ~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d- 320 (562)
T TIGR01628 242 KKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD- 320 (562)
T ss_pred cEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-
Confidence 9884333378888887765543311 11234568999999999999999999999999999999999
Q ss_pred CCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEec
Q 005712 365 STAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (681)
Q Consensus 365 ~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~ 407 (681)
.++.++|||||+|.+.++|.+||..|||+.|.|+.|.|.++..
T Consensus 321 ~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~ 363 (562)
T TIGR01628 321 EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQR 363 (562)
T ss_pred CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccC
Confidence 6899999999999999999999999999999999999988654
No 6
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.1e-35 Score=284.37 Aligned_cols=254 Identities=22% Similarity=0.411 Sum_probs=225.9
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~ 228 (681)
....|.|.-||..+|+++|+.+|...|+|++|++++|+.+|++.||+||.|.++++|.+|+..||+..|..+.|+|..+.
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred C------CCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeee
Q 005712 229 D------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVF 302 (681)
Q Consensus 229 ~------~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~ 302 (681)
+ ...|||.+||..+|..+|.++|++||. |..-+|+.| +-++.++|.+||.|....+|+.|++.||+..-.
T Consensus 120 PSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGr--IItSRiL~d-qvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~- 195 (360)
T KOG0145|consen 120 PSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGR--IITSRILVD-QVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPS- 195 (360)
T ss_pred CChhhhcccceEEecCCccchHHHHHHHHHHhhh--hhhhhhhhh-cccceecceeEEEecchhHHHHHHHhccCCCCC-
Confidence 5 468999999999999999999999997 777777777 578999999999999999999999999998642
Q ss_pred CCCCccceecccCCCCCCC----------------------------------------------------------hhh
Q 005712 303 GHPERTVKVAFAEPLREPD----------------------------------------------------------PEI 324 (681)
Q Consensus 303 g~~gr~l~v~~a~~~~~~~----------------------------------------------------------~~~ 324 (681)
+ ...+|.|+++....... +..
T Consensus 196 g-~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~ 274 (360)
T KOG0145|consen 196 G-CTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGG 274 (360)
T ss_pred C-CCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCC
Confidence 2 24677777774322100 001
Q ss_pred cccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEE
Q 005712 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (681)
Q Consensus 325 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (681)
.....+|||-||..++++.-|.++|.+||.|..|+|++|..|++.+||+||++.+-++|..||..|||..+.++.+.|.+
T Consensus 275 ~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsF 354 (360)
T KOG0145|consen 275 PGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 354 (360)
T ss_pred CCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEE
Confidence 12357999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Eec
Q 005712 405 RAR 407 (681)
Q Consensus 405 ~~~ 407 (681)
+..
T Consensus 355 Ktn 357 (360)
T KOG0145|consen 355 KTN 357 (360)
T ss_pred ecC
Confidence 754
No 7
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=6e-34 Score=297.28 Aligned_cols=252 Identities=25% Similarity=0.393 Sum_probs=223.0
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~ 228 (681)
...||||++||+.++.++|.++|+.+|+|..+.++++..++.++||+||+|+-.+++++||+.+++..+.|+.|.|.++.
T Consensus 4 ~g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~ 83 (678)
T KOG0127|consen 4 SGATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAK 83 (678)
T ss_pred CCceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccc
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999875443
Q ss_pred C--------------------------------CCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCccc
Q 005712 229 D--------------------------------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRG 276 (681)
Q Consensus 229 ~--------------------------------~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG 276 (681)
. ..+|+|+||||.+...+|+.+|+.+|. |.+|.|.+. ..+...|
T Consensus 84 ~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~--V~Ei~IP~k--~dgklcG 159 (678)
T KOG0127|consen 84 KRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGK--VVEIVIPRK--KDGKLCG 159 (678)
T ss_pred ccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcce--EEEEEcccC--CCCCccc
Confidence 1 357999999999999999999999999 999999976 3555569
Q ss_pred EEEEEeCCHHHHHHHHHHhCCCCeeeCCCCccceecccCCCCCCC-----------------------------------
Q 005712 277 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD----------------------------------- 321 (681)
Q Consensus 277 ~aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr~l~v~~a~~~~~~~----------------------------------- 321 (681)
||||.|....+|..|++.+|+..+ .+|+|.|.||.++....
T Consensus 160 FaFV~fk~~~dA~~Al~~~N~~~i----~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~ 235 (678)
T KOG0127|consen 160 FAFVQFKEKKDAEKALEFFNGNKI----DGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDG 235 (678)
T ss_pred eEEEEEeeHHHHHHHHHhccCcee----cCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcc
Confidence 999999999999999999999999 69999999995432100
Q ss_pred --------------------------------------------------hhhcccceeeeecCCCCCCCHHHHHhhhcc
Q 005712 322 --------------------------------------------------PEIMAHVKTVFLDGVPPHWKENQIRDQIKG 351 (681)
Q Consensus 322 --------------------------------------------------~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~ 351 (681)
+.......+|||+|||+++|+++|.+.|++
T Consensus 236 e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fsk 315 (678)
T KOG0127|consen 236 EEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSK 315 (678)
T ss_pred cccccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHh
Confidence 000011368999999999999999999999
Q ss_pred cCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh-----CC-ceecCCeeEEEEEecc
Q 005712 352 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI-----NN-KEFSDGNSKVKLRARL 408 (681)
Q Consensus 352 ~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~l-----ng-~~~~g~~i~v~~~~~~ 408 (681)
||.|.++.|+.++.|+.++|.|||.|.+..+|++||.+. .| ..+.||.|+|.+++..
T Consensus 316 FG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 316 FGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTR 378 (678)
T ss_pred hccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccch
Confidence 999999999999999999999999999999999999876 33 6789999999987654
No 8
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=2.3e-33 Score=313.35 Aligned_cols=247 Identities=23% Similarity=0.392 Sum_probs=212.1
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
....++|||+|||..+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||. |++..|.|+.|.|..
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 4467899999999999999999999999999999999999999999999999999999999996 899999999988754
Q ss_pred CC------------------CCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHH
Q 005712 227 SE------------------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDA 288 (681)
Q Consensus 227 ~~------------------~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A 288 (681)
+. ..++|||+|||..+|+++|+++|+++|. |..|.|+.+. .++.++|||||+|.+.++|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~--i~~v~~~~d~-~~g~~~g~afV~f~~~e~A 241 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGD--IEDVQLHRDP-ETGRSKGFGFIQFHDAEEA 241 (457)
T ss_pred cchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCC--eEEEEEEEcC-CCCccceEEEEEECCHHHH
Confidence 32 1378999999999999999999999998 9999999884 5789999999999999999
Q ss_pred HHHHHHhCCCCeeeCCCCccceecccCCCCCC------------------------------------------------
Q 005712 289 MAAYKRLQKPDVVFGHPERTVKVAFAEPLREP------------------------------------------------ 320 (681)
Q Consensus 289 ~~Al~~l~g~~~~~g~~gr~l~v~~a~~~~~~------------------------------------------------ 320 (681)
.+|+..|++..+ .++.|.|.++......
T Consensus 242 ~~A~~~l~g~~i----~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (457)
T TIGR01622 242 KEALEVMNGFEL----AGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGS 317 (457)
T ss_pred HHHHHhcCCcEE----CCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccc
Confidence 999999999777 5788999885311000
Q ss_pred -----------------Ch------------------h--hcccceeeeecCCCCCCC----------HHHHHhhhcccC
Q 005712 321 -----------------DP------------------E--IMAHVKTVFLDGVPPHWK----------ENQIRDQIKGYG 353 (681)
Q Consensus 321 -----------------~~------------------~--~~~~~~~l~V~nLp~~~t----------~~~L~~~F~~~G 353 (681)
.+ . .....++|+|.||....+ .++|++.|++||
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G 397 (457)
T TIGR01622 318 KIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYG 397 (457)
T ss_pred hhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcC
Confidence 00 0 112356788999955433 368999999999
Q ss_pred cEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 354 DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 354 ~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
.|+.|.|... .+.|++||+|.++++|.+|+..|||+.|.|+.|.|.+.
T Consensus 398 ~v~~v~v~~~----~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~ 445 (457)
T TIGR01622 398 GVVHIYVDTK----NSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFV 445 (457)
T ss_pred CeeEEEEeCC----CCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEE
Confidence 9999999643 46799999999999999999999999999999998875
No 9
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=7.9e-33 Score=309.04 Aligned_cols=239 Identities=21% Similarity=0.219 Sum_probs=200.1
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhc--CCCeeeccccCCCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM--KNPVICGKRCGTAP 226 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l--~g~~l~Gr~i~v~~ 226 (681)
++++|||+|||+++|+++|+++|++||.|.+|+|+++ +++|||+|.+.++|++||+.+ ++..|.|+.|.|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 4689999999999999999999999999999999853 689999999999999999864 67889999988865
Q ss_pred CCC------------------CCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHH
Q 005712 227 SED------------------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDA 288 (681)
Q Consensus 227 ~~~------------------~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A 288 (681)
+.. ..+|+|+||+..+|+++|+++|+.||. |..|.|+++. .+++|||+|.+.++|
T Consensus 75 s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~--V~~v~i~~~~-----~~~~afVef~~~~~A 147 (481)
T TIGR01649 75 STSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGK--VLRIVTFTKN-----NVFQALVEFESVNSA 147 (481)
T ss_pred cCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCC--EEEEEEEecC-----CceEEEEEECCHHHH
Confidence 421 126899999999999999999999998 9999988752 246899999999999
Q ss_pred HHHHHHhCCCCeeeCCCCccceecccCCCCCC-------------------------------Ch---------------
Q 005712 289 MAAYKRLQKPDVVFGHPERTVKVAFAEPLREP-------------------------------DP--------------- 322 (681)
Q Consensus 289 ~~Al~~l~g~~~~~g~~gr~l~v~~a~~~~~~-------------------------------~~--------------- 322 (681)
.+|++.||+..+.-+ .++|+|.|+.+..-. .+
T Consensus 148 ~~A~~~Lng~~i~~~--~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 225 (481)
T TIGR01649 148 QHAKAALNGADIYNG--CCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGY 225 (481)
T ss_pred HHHHHHhcCCcccCC--ceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCccc
Confidence 999999999987522 245555555321100 00
Q ss_pred --------------------------------------------hhcccceeeeecCCCC-CCCHHHHHhhhcccCcEEE
Q 005712 323 --------------------------------------------EIMAHVKTVFLDGVPP-HWKENQIRDQIKGYGDVIR 357 (681)
Q Consensus 323 --------------------------------------------~~~~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~ 357 (681)
......++|||+||++ .+|+++|+++|+.||.|..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~ 305 (481)
T TIGR01649 226 SSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVER 305 (481)
T ss_pred ccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEE
Confidence 0012456999999998 6999999999999999999
Q ss_pred EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEec
Q 005712 358 IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (681)
Q Consensus 358 v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~ 407 (681)
|+|+++ .+|||||+|.+.++|..||..|||..|.|+.|+|.+...
T Consensus 306 vki~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 306 VKFMKN-----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred EEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 999887 369999999999999999999999999999999987533
No 10
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=5.8e-33 Score=282.99 Aligned_cols=258 Identities=27% Similarity=0.487 Sum_probs=228.1
Q ss_pred CCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCC-eeecc--ccCCCC
Q 005712 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNP-VICGK--RCGTAP 226 (681)
Q Consensus 150 ~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~-~l~Gr--~i~v~~ 226 (681)
.-.+||+-||..++|.||+++|++||.|.+|.|++|+.|+.++|||||.|.+.++|.+|+.+|++. +|.|- +|.|++
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~ 113 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKY 113 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecc
Confidence 446999999999999999999999999999999999999999999999999999999999999875 34443 455555
Q ss_pred CC-------CCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCC
Q 005712 227 SE-------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD 299 (681)
Q Consensus 227 ~~-------~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~ 299 (681)
+. ..++|||+.|+..+|+.+|+++|.+||. |++|.|+++ ..+.+||||||.|.+.+.|..||+.||+..
T Consensus 114 Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~--Ied~~ilrd--~~~~sRGcaFV~fstke~A~~Aika~ng~~ 189 (510)
T KOG0144|consen 114 ADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGH--IEDCYILRD--PDGLSRGCAFVKFSTKEMAVAAIKALNGTQ 189 (510)
T ss_pred cchhhhccccchhhhhhhccccccHHHHHHHHHhhCc--cchhhheec--ccccccceeEEEEehHHHHHHHHHhhccce
Confidence 43 2578999999999999999999999999 999999998 488999999999999999999999999999
Q ss_pred eeeCCCCccceecccCCCCCCC----------------------------------------------------------
Q 005712 300 VVFGHPERTVKVAFAEPLREPD---------------------------------------------------------- 321 (681)
Q Consensus 300 ~~~g~~gr~l~v~~a~~~~~~~---------------------------------------------------------- 321 (681)
.+-|. ..+|.|+|+++++...
T Consensus 190 tmeGc-s~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~ 268 (510)
T KOG0144|consen 190 TMEGC-SQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGP 268 (510)
T ss_pred eeccC-CCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCC
Confidence 98874 6889999996654300
Q ss_pred ------------------------------------------h-------------------------------------
Q 005712 322 ------------------------------------------P------------------------------------- 322 (681)
Q Consensus 322 ------------------------------------------~------------------------------------- 322 (681)
+
T Consensus 269 l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~ 348 (510)
T KOG0144|consen 269 LNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLA 348 (510)
T ss_pred cchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccc
Confidence 0
Q ss_pred ----------------------------------------------------------------------hhcccceeee
Q 005712 323 ----------------------------------------------------------------------EIMAHVKTVF 332 (681)
Q Consensus 323 ----------------------------------------------------------------------~~~~~~~~l~ 332 (681)
........||
T Consensus 349 ~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlf 428 (510)
T KOG0144|consen 349 GGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLF 428 (510)
T ss_pred cccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCcccee
Confidence 0001235799
Q ss_pred ecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEeccCCCC
Q 005712 333 LDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPM 412 (681)
Q Consensus 333 V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~~~~~~ 412 (681)
|.+||-+.-+.+|...|..||.|...++..|+.|+-++.|+||.|++..+|..||..|||..|+.++++|.+++...++.
T Consensus 429 iyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~np~ 508 (510)
T KOG0144|consen 429 IYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNNPY 508 (510)
T ss_pred eeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987765554
No 11
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=2.4e-32 Score=309.26 Aligned_cols=246 Identities=21% Similarity=0.357 Sum_probs=202.5
Q ss_pred ccCCCCEEEEcCCCccCCHHHHHHHHhhc------------CCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcC
Q 005712 146 KIKKEHEIFIGGLDRDATQEDVRKVFERI------------GEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMK 213 (681)
Q Consensus 146 ~~~~~~tVfV~NLp~~~teedL~~~F~~~------------G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~ 213 (681)
.....++|||+|||+++|+++|+++|.++ +.|..+.+ ++.+|||||+|.+.++|.+|| +|+
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al-~l~ 243 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAM-ALD 243 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhh-cCC
Confidence 34467899999999999999999999985 23444444 356899999999999999999 599
Q ss_pred CCeeeccccCCCCC-----------------------------------CCCCcceeccccCcccHHHHHHHHhhcCccc
Q 005712 214 NPVICGKRCGTAPS-----------------------------------EDNDTLFVGNICNTWTKEAIKQKLKDYGVEG 258 (681)
Q Consensus 214 g~~l~Gr~i~v~~~-----------------------------------~~~~~L~VgnLp~~~te~~L~~~F~~~G~~~ 258 (681)
+..|.|+.|.|... ...++|||+|||..+|+++|+++|+.||.
T Consensus 244 g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~-- 321 (509)
T TIGR01642 244 SIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGD-- 321 (509)
T ss_pred CeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC--
Confidence 99999988876421 11368999999999999999999999998
Q ss_pred eEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCCccceecccCCCCCCCh----------------
Q 005712 259 VENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP---------------- 322 (681)
Q Consensus 259 v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr~l~v~~a~~~~~~~~---------------- 322 (681)
|..+.|+.+. .++.++|||||+|.+.++|..|+..|++..+ .++.|.|.++........
T Consensus 322 i~~~~~~~~~-~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~----~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~ 396 (509)
T TIGR01642 322 LKAFNLIKDI-ATGLSKGYAFCEYKDPSVTDVAIAALNGKDT----GDNKLHVQRACVGANQATIDTSNGMAPVTLLAKA 396 (509)
T ss_pred eeEEEEEecC-CCCCcCeEEEEEECCHHHHHHHHHHcCCCEE----CCeEEEEEECccCCCCCCcccccccccccccccc
Confidence 9999999884 6899999999999999999999999999988 578888888743221100
Q ss_pred -------hhcccceeeeecCCCCC--C--------CHHHHHhhhcccCcEEEEEEeecC---CCCCcceEEEEEeCCHHH
Q 005712 323 -------EIMAHVKTVFLDGVPPH--W--------KENQIRDQIKGYGDVIRIVLARNM---STAKRKDYGFIDFSTHEA 382 (681)
Q Consensus 323 -------~~~~~~~~l~V~nLp~~--~--------t~~~L~~~F~~~G~v~~v~i~~d~---~~g~~rG~aFV~F~~~~~ 382 (681)
.....+++|+|.||... + ..++|+++|++||.|+.|.|+++. .++...|+|||+|++.++
T Consensus 397 ~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~ 476 (509)
T TIGR01642 397 LSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRS 476 (509)
T ss_pred chhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHH
Confidence 00124578999999642 1 236899999999999999998753 345678999999999999
Q ss_pred HHHHHHHhCCceecCCeeEEEEE
Q 005712 383 AVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 383 A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
|++||.+|||+.|.|+.|.|.+.
T Consensus 477 A~~A~~~lnGr~~~gr~v~~~~~ 499 (509)
T TIGR01642 477 AEKAMEGMNGRKFNDRVVVAAFY 499 (509)
T ss_pred HHHHHHHcCCCEECCeEEEEEEe
Confidence 99999999999999999988874
No 12
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.2e-32 Score=261.88 Aligned_cols=226 Identities=20% Similarity=0.399 Sum_probs=189.6
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
...+||||+||..++||+-|..||++.|.|+.++|+.+. -+ ...|..- +.+-+ ..+
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e-~~---------------v~wa~~p-------~nQsk-~t~ 59 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDE-LK---------------VNWATAP-------GNQSK-PTS 59 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehhh-hc---------------cccccCc-------ccCCC-Ccc
Confidence 356899999999999999999999999999999999871 00 0000000 00000 011
Q ss_pred CCCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCCc
Q 005712 228 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307 (681)
Q Consensus 228 ~~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr 307 (681)
...-.+||+.|...++.++|++.|.+||+ |.+++|++|. .+++++||+||.|-..++|+.||..|++.-+ ..|
T Consensus 60 ~~hfhvfvgdls~eI~~e~lr~aF~pFGe--vS~akvirD~-~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl----G~R 132 (321)
T KOG0148|consen 60 NQHFHVFVGDLSPEIDNEKLREAFAPFGE--VSDAKVIRDM-NTGKSKGYGFVSFPNKEDAENAIQQMNGQWL----GRR 132 (321)
T ss_pred ccceeEEehhcchhcchHHHHHHhccccc--cccceEeecc-cCCcccceeEEeccchHHHHHHHHHhCCeee----ccc
Confidence 11346899999999999999999999999 9999999995 8999999999999999999999999999987 689
Q ss_pred cceecccCCCCCCC-----------hhhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEE
Q 005712 308 TVKVAFAEPLREPD-----------PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFID 376 (681)
Q Consensus 308 ~l~v~~a~~~~~~~-----------~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~ 376 (681)
.|+..|+..+.... .+.....++|||+||+..+|+++|++.|+.||.|..|+|.++ +||+||.
T Consensus 133 ~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVr 206 (321)
T KOG0148|consen 133 TIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVR 206 (321)
T ss_pred eeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEE
Confidence 99999998765311 122345789999999999999999999999999999999988 6899999
Q ss_pred eCCHHHHHHHHHHhCCceecCCeeEEEEEeccCC
Q 005712 377 FSTHEAAVACINAINNKEFSDGNSKVKLRARLSN 410 (681)
Q Consensus 377 F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~~~~ 410 (681)
|++.|+|..||..||+++|.|..++|.|-+....
T Consensus 207 F~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 207 FETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred ecchhhHHHHHHHhcCceeCceEEEEeccccCCC
Confidence 9999999999999999999999999999755443
No 13
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.98 E-value=4.6e-31 Score=294.87 Aligned_cols=238 Identities=17% Similarity=0.257 Sum_probs=197.2
Q ss_pred CCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeecc---------
Q 005712 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGK--------- 220 (681)
Q Consensus 150 ~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr--------- 220 (681)
..+|||.||++.+|+++|+++|+.||.|+.|.|+++. .+++|||+|.+.++|.+|++.||+..|.+.
T Consensus 96 ~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~----~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~s 171 (481)
T TIGR01649 96 VLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN----NVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYA 171 (481)
T ss_pred eEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC----CceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEe
Confidence 3579999999999999999999999999999998763 246899999999999999999999988652
Q ss_pred ---ccCCC----C-------------------------------------------------------------------
Q 005712 221 ---RCGTA----P------------------------------------------------------------------- 226 (681)
Q Consensus 221 ---~i~v~----~------------------------------------------------------------------- 226 (681)
.|.|. .
T Consensus 172 k~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (481)
T TIGR01649 172 KPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRY 251 (481)
T ss_pred cCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCC
Confidence 11110 0
Q ss_pred --------------------CCCCCcceeccccC-cccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCH
Q 005712 227 --------------------SEDNDTLFVGNICN-TWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCH 285 (681)
Q Consensus 227 --------------------~~~~~~L~VgnLp~-~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~ 285 (681)
....++|||+||++ .+|+++|+++|+.||. |..|+++++. +|+|||+|.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~--V~~vki~~~~------~g~afV~f~~~ 323 (481)
T TIGR01649 252 RPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGN--VERVKFMKNK------KETALIEMADP 323 (481)
T ss_pred cccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCC--eEEEEEEeCC------CCEEEEEECCH
Confidence 01235899999998 6999999999999998 9999998762 68999999999
Q ss_pred HHHHHHHHHhCCCCeeeCCCCccceecccCCCCCCCh--------------------------------hhcccceeeee
Q 005712 286 VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP--------------------------------EIMAHVKTVFL 333 (681)
Q Consensus 286 e~A~~Al~~l~g~~~~~g~~gr~l~v~~a~~~~~~~~--------------------------------~~~~~~~~l~V 333 (681)
++|..|+..|++..+ .++.|+|.++.......+ .....+++|||
T Consensus 324 ~~A~~Ai~~lng~~l----~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v 399 (481)
T TIGR01649 324 YQAQLALTHLNGVKL----FGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHL 399 (481)
T ss_pred HHHHHHHHHhCCCEE----CCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEE
Confidence 999999999999988 589999988754311000 00123568999
Q ss_pred cCCCCCCCHHHHHhhhcccCc--EEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCe------eEEEEE
Q 005712 334 DGVPPHWKENQIRDQIKGYGD--VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN------SKVKLR 405 (681)
Q Consensus 334 ~nLp~~~t~~~L~~~F~~~G~--v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~------i~v~~~ 405 (681)
+|||..+|+++|+++|+.||. |+.|++.... + .++++|||+|++.++|.+||..||++.|.++. |+|.++
T Consensus 400 ~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~-~-~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs 477 (481)
T TIGR01649 400 SNIPLSVSEEDLKELFAENGVHKVKKFKFFPKD-N-ERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFS 477 (481)
T ss_pred ecCCCCCCHHHHHHHHHhcCCccceEEEEecCC-C-CcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEec
Confidence 999999999999999999998 8888886553 2 35899999999999999999999999999985 666554
No 14
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.98 E-value=7.8e-31 Score=277.73 Aligned_cols=168 Identities=20% Similarity=0.405 Sum_probs=145.9
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
....++|||+|||+++|+++|+++|++||+|++|+|++|+.|++++|||||+|.+.++|++||+.|++..|.+++|.|..
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 34678999999999999999999999999999999999999999999999999999999999999999988888765443
Q ss_pred CCCCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCC
Q 005712 227 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 306 (681)
Q Consensus 227 ~~~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~g 306 (681)
+.+. ...
T Consensus 184 a~p~------------------------------------------------------------------~~~------- 190 (346)
T TIGR01659 184 ARPG------------------------------------------------------------------GES------- 190 (346)
T ss_pred cccc------------------------------------------------------------------ccc-------
Confidence 2100 000
Q ss_pred ccceecccCCCCCCChhhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHH
Q 005712 307 RTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386 (681)
Q Consensus 307 r~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~A 386 (681)
...++|||+|||+.+|+++|+++|++||.|+.|.|++++.+++++|||||+|.+.++|++|
T Consensus 191 -------------------~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~A 251 (346)
T TIGR01659 191 -------------------IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEA 251 (346)
T ss_pred -------------------cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHH
Confidence 0125799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCceecCCeeEEEEEe
Q 005712 387 INAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 387 i~~lng~~~~g~~i~v~~~~ 406 (681)
|+.||+..|.+....|.|+.
T Consensus 252 i~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 252 ISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred HHHhCCCccCCCceeEEEEE
Confidence 99999999988544444443
No 15
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.98 E-value=1.7e-30 Score=288.45 Aligned_cols=164 Identities=16% Similarity=0.364 Sum_probs=147.7
Q ss_pred hhccCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccC
Q 005712 144 DRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (681)
Q Consensus 144 ~~~~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~ 223 (681)
.+.....++|||+|||+++|+++|+++|++||+|.+|+|+.|+.|++++|||||+|.+.++|++||+.||+..|.|+.|+
T Consensus 101 ~~a~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~Ik 180 (612)
T TIGR01645 101 QQALAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIK 180 (612)
T ss_pred hhhhcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceee
Confidence 34445678999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCC-----------------CCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHH
Q 005712 224 TAPSE-----------------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHV 286 (681)
Q Consensus 224 v~~~~-----------------~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e 286 (681)
|.... ..++|||+||+..+++++|+++|+.||. |..++|+++. .++.++|||||+|.+.+
T Consensus 181 V~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~--I~svrl~~D~-~tgksKGfGFVeFe~~e 257 (612)
T TIGR01645 181 VGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE--IVKCQLARAP-TGRGHKGYGFIEYNNLQ 257 (612)
T ss_pred ecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCC--eeEEEEEecC-CCCCcCCeEEEEECCHH
Confidence 85432 2368999999999999999999999998 9999999985 57889999999999999
Q ss_pred HHHHHHHHhCCCCeeeCCCCccceeccc
Q 005712 287 DAMAAYKRLQKPDVVFGHPERTVKVAFA 314 (681)
Q Consensus 287 ~A~~Al~~l~g~~~~~g~~gr~l~v~~a 314 (681)
+|.+|+..||+..+ .++.|+|.++
T Consensus 258 ~A~kAI~amNg~el----gGr~LrV~kA 281 (612)
T TIGR01645 258 SQSEAIASMNLFDL----GGQYLRVGKC 281 (612)
T ss_pred HHHHHHHHhCCCee----CCeEEEEEec
Confidence 99999999998876 4666666554
No 16
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=9.6e-28 Score=255.38 Aligned_cols=237 Identities=24% Similarity=0.452 Sum_probs=213.0
Q ss_pred CEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCCCC
Q 005712 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDN 230 (681)
Q Consensus 151 ~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~~~ 230 (681)
.+|||+ +++|+..|.++|+.+|+|++|+|++|. | +.|||||.|.++++|.+||+++|...|.|++|++.++...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468999 899999999999999999999999997 6 9999999999999999999999999999999999998754
Q ss_pred -CcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCCccc
Q 005712 231 -DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 309 (681)
Q Consensus 231 -~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr~l 309 (681)
..|||.||+..++...|.++|+.+|. |.+|+++.+. .| ++|| ||+|.+.++|.+|+..+|+..+ .++.|
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~--ilS~kv~~~~--~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll----~~kki 145 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGN--ILSCKVATDE--NG-SKGY-FVQFESEESAKKAIEKLNGMLL----NGKKI 145 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcC--eeEEEEEEcC--CC-ceee-EEEeCCHHHHHHHHHHhcCccc----CCCee
Confidence 55999999999999999999999998 9999999984 45 9999 9999999999999999999887 57888
Q ss_pred eecccCCCCCCCh---hhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHH
Q 005712 310 KVAFAEPLREPDP---EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386 (681)
Q Consensus 310 ~v~~a~~~~~~~~---~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~A 386 (681)
.|........... +.....+.++|.|++..++.+.|+++|.++|.|..+.|+.+. .++++||+||.|+++++|..|
T Consensus 146 ~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~a 224 (369)
T KOG0123|consen 146 YVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKA 224 (369)
T ss_pred EEeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecC-CCCCCCccceeecChhHHHHH
Confidence 8877765544221 134456789999999999999999999999999999999984 566999999999999999999
Q ss_pred HHHhCCceecCCeeEEEE
Q 005712 387 INAINNKEFSDGNSKVKL 404 (681)
Q Consensus 387 i~~lng~~~~g~~i~v~~ 404 (681)
+..||+..+.+..+.|.-
T Consensus 225 v~~l~~~~~~~~~~~V~~ 242 (369)
T KOG0123|consen 225 VETLNGKIFGDKELYVGR 242 (369)
T ss_pred HHhccCCcCCccceeecc
Confidence 999999999988766654
No 17
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=2.8e-29 Score=262.44 Aligned_cols=200 Identities=23% Similarity=0.360 Sum_probs=151.2
Q ss_pred ccCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhc-----CC-Ceeec
Q 005712 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM-----KN-PVICG 219 (681)
Q Consensus 146 ~~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l-----~g-~~l~G 219 (681)
......||||+|||+++|+++|.++|++||+|.++.|+.++.|++++|+|||.|.+..+|+.||++. .+ .+|.|
T Consensus 288 n~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~G 367 (678)
T KOG0127|consen 288 NITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDG 367 (678)
T ss_pred cccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEec
Confidence 3446799999999999999999999999999999999999999999999999999999999999976 23 67889
Q ss_pred cccCCCCCCC-------------------------------------------------------------------CCc
Q 005712 220 KRCGTAPSED-------------------------------------------------------------------NDT 232 (681)
Q Consensus 220 r~i~v~~~~~-------------------------------------------------------------------~~~ 232 (681)
|.|.|..+.. .++
T Consensus 368 R~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~k~k~lknpnlhlSrtR 447 (678)
T KOG0127|consen 368 RLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDMAKRERIAERKRKKLKNPNLHLSRTR 447 (678)
T ss_pred cEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhHHHHHHHHHHHHHhhcCCceeeehhh
Confidence 9887754321 257
Q ss_pred ceeccccCcccHHHHHHHHhhcC----ccceEEeeecccccc--CCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCC
Q 005712 233 LFVGNICNTWTKEAIKQKLKDYG----VEGVENINLVSDIQH--EGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 306 (681)
Q Consensus 233 L~VgnLp~~~te~~L~~~F~~~G----~~~v~~i~i~~d~~~--tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~g 306 (681)
|.|.|||..++...|..++.+.- ...+..|+.+...+. .+.+.||+||.|..++.|.+|++.+ +..
T Consensus 448 L~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~~le~~~k~~s~g~aF~~f~EhEhalkalk~~-G~l------- 519 (678)
T KOG0127|consen 448 LVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIKFLEEEKKNYSEGYAFVGFTEHEHALKALKVL-GVL------- 519 (678)
T ss_pred hhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhhhHHhhhhcccccccccCccHHHHHHHhhhcc-ccc-------
Confidence 88899999999999988876542 112333444444322 4678999999999999999998754 110
Q ss_pred ccceecccCCCCCCChhhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHH
Q 005712 307 RTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386 (681)
Q Consensus 307 r~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~A 386 (681)
++..|. ..+ .+...+.++|++|++|..+.-|..+
T Consensus 520 kq~~Ve---------------------------------------------fev-~~~k~~~sk~q~f~q~~~hK~a~~e 553 (678)
T KOG0127|consen 520 KQAKVE---------------------------------------------FEV-DGVKAGRSKGQGFQQFEKHKRALME 553 (678)
T ss_pred ccceEE---------------------------------------------EEe-ccchhhhhhhhhHHHHHhhhhhhcc
Confidence 111110 000 1112478899999999999888888
Q ss_pred HHHhCCceecCCe
Q 005712 387 INAINNKEFSDGN 399 (681)
Q Consensus 387 i~~lng~~~~g~~ 399 (681)
+..+|.+.+....
T Consensus 554 ~r~~~pr~~t~~~ 566 (678)
T KOG0127|consen 554 LRWLNPRKETAAR 566 (678)
T ss_pred cccCCCccchHHH
Confidence 8888777655433
No 18
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=2.9e-27 Score=251.75 Aligned_cols=243 Identities=22% Similarity=0.414 Sum_probs=213.9
Q ss_pred EEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCC---
Q 005712 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE--- 228 (681)
Q Consensus 152 tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~--- 228 (681)
.|||.||+.++|..+|.++|+.||.|++|++.++. .| ++|| ||+|.++++|++|++.+||..+.+++|.|....
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~ 154 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKE 154 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchh
Confidence 39999999999999999999999999999999984 45 9999 999999999999999999999999998874332
Q ss_pred -----------CCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 005712 229 -----------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQK 297 (681)
Q Consensus 229 -----------~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g 297 (681)
.-+.+++.+++.+++...|.++|..+|. |..+.++.+ ..+.+++|+||.|.+.++|..|+..|++
T Consensus 155 er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~--i~s~~v~~~--~~g~~~~~gfv~f~~~e~a~~av~~l~~ 230 (369)
T KOG0123|consen 155 EREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGS--ITSVAVMRD--SIGKSKGFGFVNFENPEDAKKAVETLNG 230 (369)
T ss_pred hhcccccchhhhhhhhheeccccccchHHHHHhhcccCc--ceEEEEeec--CCCCCCCccceeecChhHHHHHHHhccC
Confidence 2467899999999999999999999998 999999988 4777999999999999999999999999
Q ss_pred CCeeeCCCCccceecccCCCCCC-------------ChhhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecC
Q 005712 298 PDVVFGHPERTVKVAFAEPLREP-------------DPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNM 364 (681)
Q Consensus 298 ~~~~~g~~gr~l~v~~a~~~~~~-------------~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~ 364 (681)
... .+..+.|..++.+... .+........|+|.||+..++.+.|+.+|+.+|.|+.++|+.+
T Consensus 231 ~~~----~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~- 305 (369)
T KOG0123|consen 231 KIF----GDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVD- 305 (369)
T ss_pred CcC----CccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEec-
Confidence 887 3566666666543221 1122344678999999999999999999999999999999988
Q ss_pred CCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEe
Q 005712 365 STAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 365 ~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (681)
..++++||+||+|++.++|..|+..+|+..+.++.+.|.+..
T Consensus 306 ~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~q 347 (369)
T KOG0123|consen 306 ENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQ 347 (369)
T ss_pred cCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHh
Confidence 578999999999999999999999999999999998877654
No 19
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.92 E-value=1.3e-24 Score=241.62 Aligned_cols=170 Identities=22% Similarity=0.428 Sum_probs=151.1
Q ss_pred CCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCCccc
Q 005712 230 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 309 (681)
Q Consensus 230 ~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr~l 309 (681)
.++|||+||++.+++++|+++|.+||. |..|+++.+. .+++++|||||+|.+.++|.+|+..|++..+ .++.|
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~--I~sV~I~~D~-~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i----~GR~I 179 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGP--IKSINMSWDP-ATGKHKGFAFVEYEVPEAAQLALEQMNGQML----GGRNI 179 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCC--EEEEEEeecC-CCCCcCCeEEEEeCcHHHHHHHHHhcCCeEE----eccee
Confidence 468999999999999999999999998 9999999984 6899999999999999999999999999887 58999
Q ss_pred eecccCCCCCCCh------hhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHH
Q 005712 310 KVAFAEPLREPDP------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383 (681)
Q Consensus 310 ~v~~a~~~~~~~~------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A 383 (681)
+|.+........+ ......++|||+||+..+++++|+++|+.||.|+.|+|+++..+++++|||||+|++.++|
T Consensus 180 kV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A 259 (612)
T TIGR01645 180 KVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQ 259 (612)
T ss_pred eecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHH
Confidence 9986543322111 1122357999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCceecCCeeEEEEEe
Q 005712 384 VACINAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 384 ~~Ai~~lng~~~~g~~i~v~~~~ 406 (681)
.+||..||+..|+|+.|+|...+
T Consensus 260 ~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 260 SEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred HHHHHHhCCCeeCCeEEEEEecC
Confidence 99999999999999998887654
No 20
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=2.1e-24 Score=215.59 Aligned_cols=255 Identities=15% Similarity=0.327 Sum_probs=207.7
Q ss_pred hhhccCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeecccc
Q 005712 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRC 222 (681)
Q Consensus 143 ~~~~~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i 222 (681)
.++...--|+|||+.|.+++.|+.|+..|..||+|++|.+..|+.|++.+|||||+|.-+|.|+.||+.||+..|.||.|
T Consensus 106 rqqALaiMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNi 185 (544)
T KOG0124|consen 106 RQQALAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNI 185 (544)
T ss_pred HHHHHHHhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccc
Confidence 34445567999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC-----------------CCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCH
Q 005712 223 GTAPSED-----------------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCH 285 (681)
Q Consensus 223 ~v~~~~~-----------------~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~ 285 (681)
+|..... -.+|||..+.++.++++|+.+|+.||+ |..|.+.+.+ ..+.++||+||+|.+.
T Consensus 186 KVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~--I~~C~LAr~p-t~~~HkGyGfiEy~n~ 262 (544)
T KOG0124|consen 186 KVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE--IVKCQLARAP-TGRGHKGYGFIEYNNL 262 (544)
T ss_pred cccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcc--eeeEEeeccC-CCCCccceeeEEeccc
Confidence 9865432 479999999999999999999999999 9999999985 5677899999999999
Q ss_pred HHHHHHHHHhCCCCeeeCCCCccceecccCCCCC----------------------------------------------
Q 005712 286 VDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLRE---------------------------------------------- 319 (681)
Q Consensus 286 e~A~~Al~~l~g~~~~~g~~gr~l~v~~a~~~~~---------------------------------------------- 319 (681)
.+...|+..||--++ .+.-|+|..+.....
T Consensus 263 qs~~eAiasMNlFDL----GGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~ 338 (544)
T KOG0124|consen 263 QSQSEAIASMNLFDL----GGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGL 338 (544)
T ss_pred cchHHHhhhcchhhc----ccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccc
Confidence 999999998886554 344444443310000
Q ss_pred ----------------------------------------------------CC-----------------------h--
Q 005712 320 ----------------------------------------------------PD-----------------------P-- 322 (681)
Q Consensus 320 ----------------------------------------------------~~-----------------------~-- 322 (681)
.. +
T Consensus 339 vSpA~~aa~p~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~ 418 (544)
T KOG0124|consen 339 VSPAPRAAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEM 418 (544)
T ss_pred cCccccccCCCCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHH
Confidence 00 0
Q ss_pred ----------------------hhcccceeeeecCC--CCCC---CHHHHHhhhcccCcEEEEEEeecCCCCCc----ce
Q 005712 323 ----------------------EIMAHVKTVFLDGV--PPHW---KENQIRDQIKGYGDVIRIVLARNMSTAKR----KD 371 (681)
Q Consensus 323 ----------------------~~~~~~~~l~V~nL--p~~~---t~~~L~~~F~~~G~v~~v~i~~d~~~g~~----rG 371 (681)
.....++.|.++|+ |.++ -+.+|.+.|.+||.|.+|.|...+.+..- --
T Consensus 419 L~~QE~msI~G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiV 498 (544)
T KOG0124|consen 419 LSEQEHMSISGSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIV 498 (544)
T ss_pred hhhhhCccccCccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhh
Confidence 00023457788887 3343 34688999999999999999877554321 12
Q ss_pred EEEEEeCCHHHHHHHHHHhCCceecCCeeEEEE
Q 005712 372 YGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (681)
Q Consensus 372 ~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (681)
--||+|....++.+|+.+|+|+.|.|+++..++
T Consensus 499 KIFVefS~~~e~~rak~ALdGRfFgGr~VvAE~ 531 (544)
T KOG0124|consen 499 KIFVEFSIASETHRAKQALDGRFFGGRKVVAEV 531 (544)
T ss_pred eeeeeechhhHHHHHHHhhccceecCceeehhh
Confidence 359999999999999999999999999976654
No 21
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.92 E-value=3.4e-25 Score=233.92 Aligned_cols=245 Identities=22% Similarity=0.366 Sum_probs=204.6
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
...+|||+--|+..++..+|.+||+.+|+|.+|+||+|+.+++++|.|||+|.+.+....|| .|.|+.+.|.+|.|..+
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLS 255 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEeccc
Confidence 36689999999999999999999999999999999999999999999999999999999999 59999999999988654
Q ss_pred CC--------------------CCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHH
Q 005712 228 ED--------------------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVD 287 (681)
Q Consensus 228 ~~--------------------~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~ 287 (681)
.. -.+|||+||.++++++.|+.+|+.||. |..|.++.+. .+|+++||+||+|.+.++
T Consensus 256 Eaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~--Ie~v~l~~d~-~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 256 EAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGK--IENVQLTKDS-ETGRSKGFGFITFVNKED 332 (549)
T ss_pred HHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCccc--ceeeeecccc-ccccccCcceEEEecHHH
Confidence 32 134999999999999999999999998 9999999984 699999999999999999
Q ss_pred HHHHHHHhCCCCeeeCCCCccceecccCCCCCC-----------------------------------------------
Q 005712 288 AMAAYKRLQKPDVVFGHPERTVKVAFAEPLREP----------------------------------------------- 320 (681)
Q Consensus 288 A~~Al~~l~g~~~~~g~~gr~l~v~~a~~~~~~----------------------------------------------- 320 (681)
|.+|+..||+-++ .|+.|+|....-....
T Consensus 333 ar~a~e~lngfel----AGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~ 408 (549)
T KOG0147|consen 333 ARKALEQLNGFEL----AGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISA 408 (549)
T ss_pred HHHHHHHhcccee----cCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhH
Confidence 9999999999665 4777776544211000
Q ss_pred --------------------Chhhc-------ccceeeeecCCCCC--CC--------HHHHHhhhcccCcEEEEEEeec
Q 005712 321 --------------------DPEIM-------AHVKTVFLDGVPPH--WK--------ENQIRDQIKGYGDVIRIVLARN 363 (681)
Q Consensus 321 --------------------~~~~~-------~~~~~l~V~nLp~~--~t--------~~~L~~~F~~~G~v~~v~i~~d 363 (681)
...+. ..+.++.++|+-.. .| .++|.+.|.+||.|.+|.|.+.
T Consensus 409 l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n 488 (549)
T KOG0147|consen 409 LLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN 488 (549)
T ss_pred HHhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC
Confidence 00000 23446666776332 11 2688899999999999988544
Q ss_pred CCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 364 MSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 364 ~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
+-|+.||.|.+.++|..|+.+|||.+|.|+.|++.+-
T Consensus 489 -----s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~ 525 (549)
T KOG0147|consen 489 -----SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYL 525 (549)
T ss_pred -----CCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEe
Confidence 3499999999999999999999999999999998864
No 22
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.92 E-value=2.2e-24 Score=233.44 Aligned_cols=250 Identities=20% Similarity=0.290 Sum_probs=203.8
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
....+.|+|+|||..+..++|..+|..||+|..|.|.. .|. .|+|+|.+..+|++|+..|....+...++.+.+
T Consensus 382 ~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~---~G~---~aiv~fl~p~eAr~Afrklaysr~k~~plyle~ 455 (725)
T KOG0110|consen 382 ERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPP---GGT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEW 455 (725)
T ss_pred hhhcceeeeccCccccccHHHHHHhhcccccceeecCc---ccc---eeeeeecCccchHHHHHHhchhhhccCcccccc
Confidence 34558999999999999999999999999999995542 122 499999999999999998865544333221100
Q ss_pred C--------------------------------------------------------CCCCcceeccccCcccHHHHHHH
Q 005712 227 S--------------------------------------------------------EDNDTLFVGNICNTWTKEAIKQK 250 (681)
Q Consensus 227 ~--------------------------------------------------------~~~~~L~VgnLp~~~te~~L~~~ 250 (681)
+ ...++|||.||++.+|.++|..+
T Consensus 456 aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~ 535 (725)
T KOG0110|consen 456 APEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDL 535 (725)
T ss_pred ChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHH
Confidence 0 00234999999999999999999
Q ss_pred HhhcCccceEEeeecccc--ccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCCccceecccCCCCCCC----hhh
Q 005712 251 LKDYGVEGVENINLVSDI--QHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD----PEI 324 (681)
Q Consensus 251 F~~~G~~~v~~i~i~~d~--~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr~l~v~~a~~~~~~~----~~~ 324 (681)
|...|. |..+.|.... .+.-.|.||+||+|.+.++|..|++.|+++.+ +++.|.|.++....... ...
T Consensus 536 F~k~G~--VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvl----dGH~l~lk~S~~k~~~~~gK~~~~ 609 (725)
T KOG0110|consen 536 FSKQGT--VLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVL----DGHKLELKISENKPASTVGKKKSK 609 (725)
T ss_pred HHhcCe--EEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCcee----cCceEEEEeccCcccccccccccc
Confidence 999998 8887665543 22345779999999999999999999999988 79999999988222211 111
Q ss_pred cccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEE
Q 005712 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (681)
Q Consensus 325 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (681)
....++|.|+|||+.++..+|+.+|..||.|..|+|+.....+.++|||||+|-++.+|.+|+.+|..+.+.||.|.++|
T Consensus 610 kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEw 689 (725)
T KOG0110|consen 610 KKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEW 689 (725)
T ss_pred ccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheeh
Confidence 22367999999999999999999999999999999998866778899999999999999999999999999999999999
Q ss_pred Eecc
Q 005712 405 RARL 408 (681)
Q Consensus 405 ~~~~ 408 (681)
+...
T Consensus 690 A~~d 693 (725)
T KOG0110|consen 690 AKSD 693 (725)
T ss_pred hccc
Confidence 7543
No 23
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.91 E-value=2.4e-23 Score=212.62 Aligned_cols=145 Identities=26% Similarity=0.453 Sum_probs=128.6
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhh-cCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFER-IGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~-~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
..+.|||.|||+++.+++|++||.. .|+|+.|.|..| .+|+++|||.|+|+++|.++||++.||...+.||.|.|+..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 4456999999999999999999975 899999999999 77999999999999999999999999999999998876422
Q ss_pred CC------------------------------------------------------------------------------
Q 005712 228 ED------------------------------------------------------------------------------ 229 (681)
Q Consensus 228 ~~------------------------------------------------------------------------------ 229 (681)
.+
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 10
Q ss_pred -------------CCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhC
Q 005712 230 -------------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQ 296 (681)
Q Consensus 230 -------------~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~ 296 (681)
..++||.||...+....|++.|.-.|. ++.|.+-.+ ..+.++|++.++|..+-+|.+||..|+
T Consensus 202 ~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGk--v~~vdf~id--KeG~s~G~~vi~y~hpveavqaIsml~ 277 (608)
T KOG4212|consen 202 SFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGK--VQSVDFSID--KEGNSRGFAVIEYDHPVEAVQAISMLD 277 (608)
T ss_pred hhhhhccCCCCCccceeeeeccccccchHHHHHHhcccee--eeeeceeec--cccccCCeeEEEecchHHHHHHHHhhc
Confidence 247889999999999999999999998 888888777 467899999999999999999999888
Q ss_pred CC
Q 005712 297 KP 298 (681)
Q Consensus 297 g~ 298 (681)
..
T Consensus 278 ~~ 279 (608)
T KOG4212|consen 278 RQ 279 (608)
T ss_pred cC
Confidence 53
No 24
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=3e-24 Score=207.70 Aligned_cols=154 Identities=27% Similarity=0.567 Sum_probs=145.1
Q ss_pred CCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCC-
Q 005712 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE- 228 (681)
Q Consensus 150 ~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~- 228 (681)
-.-|||+.|..+++-++|++.|.+||+|.+++|++|..|+++|||+||.|.++++|+.||..||+..|.+|.|+..++.
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 4579999999999999999999999999999999999999999999999999999999999999999999999986654
Q ss_pred ---------------------CCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHH
Q 005712 229 ---------------------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVD 287 (681)
Q Consensus 229 ---------------------~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~ 287 (681)
++++|||+||+.-+|+++|+++|+.||. |.+|+++++ +||+||.|.+.++
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~--I~EVRvFk~-------qGYaFVrF~tkEa 212 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGP--IQEVRVFKD-------QGYAFVRFETKEA 212 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCc--ceEEEEecc-------cceEEEEecchhh
Confidence 3689999999999999999999999999 999999998 7999999999999
Q ss_pred HHHHHHHhCCCCeeeCCCCccceecccCC
Q 005712 288 AMAAYKRLQKPDVVFGHPERTVKVAFAEP 316 (681)
Q Consensus 288 A~~Al~~l~g~~~~~g~~gr~l~v~~a~~ 316 (681)
|..||-.+|++++ .++.+++.|.+.
T Consensus 213 AahAIv~mNntei----~G~~VkCsWGKe 237 (321)
T KOG0148|consen 213 AAHAIVQMNNTEI----GGQLVRCSWGKE 237 (321)
T ss_pred HHHHHHHhcCcee----CceEEEEecccc
Confidence 9999999999999 688888888764
No 25
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.91 E-value=1.9e-23 Score=225.55 Aligned_cols=166 Identities=23% Similarity=0.398 Sum_probs=149.7
Q ss_pred CCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCCccc
Q 005712 230 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 309 (681)
Q Consensus 230 ~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr~l 309 (681)
.++|||+|||..+++++|+++|+.+|. |..|+|+++. .+++++|||||+|.+.++|.+|+..|++..+ .++.|
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~--i~~v~i~~d~-~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l----~g~~i 75 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGE--IESCKLVRDK-VTGQSLGYGFVNYVRPEDAEKAVNSLNGLRL----QNKTI 75 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCC--EEEEEEEEcC-CCCccceEEEEEECcHHHHHHHHhhcccEEE----CCeeE
Confidence 578999999999999999999999998 9999999984 6789999999999999999999999999887 58999
Q ss_pred eecccCCCCCCChhhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 005712 310 KVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389 (681)
Q Consensus 310 ~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~ 389 (681)
+|.++.+.... ...++|||+|||..+++++|+.+|++||.|..+.|+.+..++.++|||||+|++.++|..||..
T Consensus 76 ~v~~a~~~~~~-----~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~ 150 (352)
T TIGR01661 76 KVSYARPSSDS-----IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKT 150 (352)
T ss_pred EEEeecccccc-----cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 99998765432 2346899999999999999999999999999999999988889999999999999999999999
Q ss_pred hCCceecCCeeEEEEEec
Q 005712 390 INNKEFSDGNSKVKLRAR 407 (681)
Q Consensus 390 lng~~~~g~~i~v~~~~~ 407 (681)
|||..+.|+...|.+..+
T Consensus 151 l~g~~~~g~~~~i~v~~a 168 (352)
T TIGR01661 151 LNGTTPSGCTEPITVKFA 168 (352)
T ss_pred hCCCccCCCceeEEEEEC
Confidence 999999986655554433
No 26
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=1.4e-21 Score=201.07 Aligned_cols=163 Identities=20% Similarity=0.364 Sum_probs=140.9
Q ss_pred CCCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCCc
Q 005712 228 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307 (681)
Q Consensus 228 ~~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr 307 (681)
...+.|||+.||.++.+++|..+|++.|. |.+++||+++ .+|.++|||||+|.+.++|+.|++.||+.+|. .++
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~--I~elRLMmD~-~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir---~GK 154 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGK--IYELRLMMDP-FSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR---PGK 154 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccc--eeeEEEeecc-cCCCCcceEEEEeecHHHHHHHHHHhhCcccc---CCC
Confidence 34689999999999999999999999999 9999999995 79999999999999999999999999999986 678
Q ss_pred cceecccCCCCCCChhhcccceeeeecCCCCCCCHHHHHhhhcccC-cEEEEEEeecC-CCCCcceEEEEEeCCHHHHHH
Q 005712 308 TVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYG-DVIRIVLARNM-STAKRKDYGFIDFSTHEAAVA 385 (681)
Q Consensus 308 ~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G-~v~~v~i~~d~-~~g~~rG~aFV~F~~~~~A~~ 385 (681)
.|.|..+.. .++|||+|||.++++++|++.|++.+ -|+.|.|.... ++.++||||||+|+++..|..
T Consensus 155 ~igvc~Sva-----------n~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~ 223 (506)
T KOG0117|consen 155 LLGVCVSVA-----------NCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAM 223 (506)
T ss_pred EeEEEEeee-----------cceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHH
Confidence 998887654 58999999999999999999999985 35556555443 456899999999999999999
Q ss_pred HHHHhCCc--eecCCeeEEEEEec
Q 005712 386 CINAINNK--EFSDGNSKVKLRAR 407 (681)
Q Consensus 386 Ai~~lng~--~~~g~~i~v~~~~~ 407 (681)
|-++|-.. ++-|..+.|+|+..
T Consensus 224 aRrKl~~g~~klwgn~~tVdWAep 247 (506)
T KOG0117|consen 224 ARRKLMPGKIKLWGNAITVDWAEP 247 (506)
T ss_pred HHhhccCCceeecCCcceeeccCc
Confidence 98877433 46688888887543
No 27
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.89 E-value=2.2e-22 Score=223.75 Aligned_cols=190 Identities=21% Similarity=0.362 Sum_probs=152.2
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCC-eEEEEEee-cCCCCCccceEEEEecchhHHHHHHHhcCC--CeeeccccCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGE-VIEVRLHK-NFSTNRNKGYAFVKFANKEHAKRALTEMKN--PVICGKRCGT 224 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~-V~~v~i~~-d~~tg~skG~aFVeF~~~e~A~~Al~~l~g--~~l~Gr~i~v 224 (681)
..++|||+|||.++|+++|.++|++++. |+.+.++. ...+++++|||||+|.+.++|.+|+..|+. ..|.|+.|.|
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~V 216 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAV 216 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEE
Confidence 5689999999999999999999999864 55554432 334568899999999999999999988754 3577888887
Q ss_pred CCCCC-----------CCcceeccccCcccHHHHHHHHhhc--CccceEEeeeccccccCCCcccEEEEEeCCHHHHHHH
Q 005712 225 APSED-----------NDTLFVGNICNTWTKEAIKQKLKDY--GVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAA 291 (681)
Q Consensus 225 ~~~~~-----------~~~L~VgnLp~~~te~~L~~~F~~~--G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~A 291 (681)
.++.. .++|||+||++.+++++|+++|++| |. |+.|.+++ +||||+|.+.++|.+|
T Consensus 217 dwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~--I~rV~~~r---------gfAFVeF~s~e~A~kA 285 (578)
T TIGR01648 217 DWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGK--VERVKKIR---------DYAFVHFEDREDAVKA 285 (578)
T ss_pred EeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCc--eEEEEeec---------CeEEEEeCCHHHHHHH
Confidence 65543 3679999999999999999999999 87 99888763 4999999999999999
Q ss_pred HHHhCCCCeeeCCCCccceecccCCCCCCCh-----------------------hhcccceeeeecCCCCCCCHHHHHhh
Q 005712 292 YKRLQKPDVVFGHPERTVKVAFAEPLREPDP-----------------------EIMAHVKTVFLDGVPPHWKENQIRDQ 348 (681)
Q Consensus 292 l~~l~g~~~~~g~~gr~l~v~~a~~~~~~~~-----------------------~~~~~~~~l~V~nLp~~~t~~~L~~~ 348 (681)
++.||+..+ .++.|+|.|+.+...... .......++++.||++.++++.|.++
T Consensus 286 i~~lnG~~i----~Gr~I~V~~Akp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~ 361 (578)
T TIGR01648 286 MDELNGKEL----EGSEIEVTLAKPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHF 361 (578)
T ss_pred HHHhCCCEE----CCEEEEEEEccCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhc
Confidence 999999988 689999999987533200 01123467777777777777777777
Q ss_pred hcccC
Q 005712 349 IKGYG 353 (681)
Q Consensus 349 F~~~G 353 (681)
|..+|
T Consensus 362 f~~~g 366 (578)
T TIGR01648 362 PRMPG 366 (578)
T ss_pred cccCc
Confidence 76654
No 28
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=3.1e-23 Score=212.19 Aligned_cols=167 Identities=26% Similarity=0.445 Sum_probs=149.1
Q ss_pred CCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCCccc
Q 005712 230 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 309 (681)
Q Consensus 230 ~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr~l 309 (681)
.-+|||+.||..|++.+|+++|++||. |.+|.|++| +.++.++|||||.|.+.++|.+|+.+|++...+.| ...+|
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~--V~einl~kD-k~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG-~~~pv 109 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGN--VYEINLIKD-KSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPG-MHHPV 109 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCc--eeEEEeecc-cccCcccceEEEEeccHHHHHHHHHHhhcccccCC-CCcce
Confidence 468999999999999999999999998 999999999 58999999999999999999999999999988777 57899
Q ss_pred eecccCCCCCCChhhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 005712 310 KVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389 (681)
Q Consensus 310 ~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~ 389 (681)
.|.+++..++... ...+|||+-|+..+|+.+|+++|.+||.|++|.|+++. .+.+||||||+|++.+.|..||++
T Consensus 110 qvk~Ad~E~er~~----~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika 184 (510)
T KOG0144|consen 110 QVKYADGERERIV----EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKA 184 (510)
T ss_pred eecccchhhhccc----cchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHh
Confidence 9999987666542 35799999999999999999999999999999999994 789999999999999999999999
Q ss_pred hCCce-ecCCeeEEEEE
Q 005712 390 INNKE-FSDGNSKVKLR 405 (681)
Q Consensus 390 lng~~-~~g~~i~v~~~ 405 (681)
|||.. +.|....+.|+
T Consensus 185 ~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 185 LNGTQTMEGCSQPLVVK 201 (510)
T ss_pred hccceeeccCCCceEEE
Confidence 99974 55644333333
No 29
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.89 E-value=1.5e-22 Score=226.34 Aligned_cols=171 Identities=20% Similarity=0.322 Sum_probs=150.4
Q ss_pred CCCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCCc
Q 005712 228 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307 (681)
Q Consensus 228 ~~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr 307 (681)
...++|||+|||..+++++|+++|+++|. |..|+|+.+. .+++++|||||+|.+.++|.+||. |++..+ .++
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~--v~~v~i~~d~-~~~~skg~afVeF~~~e~A~~Al~-l~g~~~----~g~ 158 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGK--VRDVQCIKDR-NSRRSKGVAYVEFYDVESVIKALA-LTGQML----LGR 158 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCC--eeEEEEeecC-CCCCcceEEEEEECCHHHHHHHHH-hCCCEE----CCe
Confidence 34679999999999999999999999998 9999999984 689999999999999999999996 888877 478
Q ss_pred cceecccCCCCCCCh-------hhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCH
Q 005712 308 TVKVAFAEPLREPDP-------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTH 380 (681)
Q Consensus 308 ~l~v~~a~~~~~~~~-------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~ 380 (681)
+|.|.++........ ......++|||+|||..+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.
T Consensus 159 ~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~ 238 (457)
T TIGR01622 159 PIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDA 238 (457)
T ss_pred eeEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCH
Confidence 888877653322111 0112257999999999999999999999999999999999998999999999999999
Q ss_pred HHHHHHHHHhCCceecCCeeEEEEEe
Q 005712 381 EAAVACINAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 381 ~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (681)
++|.+||..|||..|.|+.|.|.++.
T Consensus 239 e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 239 EEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred HHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 99999999999999999999998865
No 30
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.86 E-value=8.3e-20 Score=190.94 Aligned_cols=245 Identities=19% Similarity=0.284 Sum_probs=173.7
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
......|.+++||+.+|+++|.+||+.++ |+.+.+.+ .+|+..|-|||+|.+.|++++||+. +...+..+-|.|-.
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFT 82 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEc
Confidence 34567899999999999999999999996 77766654 5799999999999999999999984 55555555555422
Q ss_pred C-----------------CCCCcceeccccCcccHHHHHHHHhhcCccceEE-eeeccccccCCCcccEEEEEeCCHHHH
Q 005712 227 S-----------------EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVEN-INLVSDIQHEGLSRGFAFVMFSCHVDA 288 (681)
Q Consensus 227 ~-----------------~~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~-i~i~~d~~~tg~skG~aFV~F~s~e~A 288 (681)
+ .....|.|.+||+.||+++|.++|+..-. +.. |.++.+ ..+++.|-|||+|++.+.|
T Consensus 83 ~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~I--v~~gi~l~~d--~rgR~tGEAfVqF~sqe~a 158 (510)
T KOG4211|consen 83 AGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEI--VPDGILLPMD--QRGRPTGEAFVQFESQESA 158 (510)
T ss_pred cCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcc--cccceeeecc--CCCCcccceEEEecCHHHH
Confidence 2 13467899999999999999999998865 444 445554 4678999999999999999
Q ss_pred HHHHHHhCCC---Cee--eCC---------------CC------c--ccee--cccCCCC--------------------
Q 005712 289 MAAYKRLQKP---DVV--FGH---------------PE------R--TVKV--AFAEPLR-------------------- 318 (681)
Q Consensus 289 ~~Al~~l~g~---~~~--~g~---------------~g------r--~l~v--~~a~~~~-------------------- 318 (681)
++||...... ..+ +.. .+ + ..+. .+.....
T Consensus 159 e~Al~rhre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~ 238 (510)
T KOG4211|consen 159 EIALGRHRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSR 238 (510)
T ss_pred HHHHHHHHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCcccccc
Confidence 9999753321 100 000 00 0 0000 0000000
Q ss_pred ----C-----------------CC--h----------hhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCC
Q 005712 319 ----E-----------------PD--P----------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMS 365 (681)
Q Consensus 319 ----~-----------------~~--~----------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~ 365 (681)
. .. + ........+.+++||+..+..+|..+|+..-.+ .|.|-.. .
T Consensus 239 ~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig-~ 316 (510)
T KOG4211|consen 239 YPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIG-P 316 (510)
T ss_pred CccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeC-C
Confidence 0 00 0 000112678999999999999999999987544 4555444 4
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEE
Q 005712 366 TAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 402 (681)
Q Consensus 366 ~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v 402 (681)
+++..|-|+|+|.|+++|..|+. -++..+..+-|.+
T Consensus 317 dGr~TGEAdveF~t~edav~Ams-kd~anm~hrYVEl 352 (510)
T KOG4211|consen 317 DGRATGEADVEFATGEDAVGAMG-KDGANMGHRYVEL 352 (510)
T ss_pred CCccCCcceeecccchhhHhhhc-cCCcccCcceeee
Confidence 68999999999999999999984 3666666666444
No 31
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.85 E-value=1.2e-20 Score=213.77 Aligned_cols=169 Identities=20% Similarity=0.371 Sum_probs=136.1
Q ss_pred CCCCCCcceeccccCcccHHHHHHHHhhcCc----------cceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHh
Q 005712 226 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGV----------EGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRL 295 (681)
Q Consensus 226 ~~~~~~~L~VgnLp~~~te~~L~~~F~~~G~----------~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l 295 (681)
.....++|||+|||+.+|+++|.++|.+++. ..|..+.+ ...++||||+|.+.++|..|| .|
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-------~~~kg~afVeF~~~e~A~~Al-~l 242 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-------NKEKNFAFLEFRTVEEATFAM-AL 242 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-------CCCCCEEEEEeCCHHHHhhhh-cC
Confidence 3445689999999999999999999998621 01333333 345899999999999999999 48
Q ss_pred CCCCeeeCCCCccceecccCCCCC----------CC--------------hhhcccceeeeecCCCCCCCHHHHHhhhcc
Q 005712 296 QKPDVVFGHPERTVKVAFAEPLRE----------PD--------------PEIMAHVKTVFLDGVPPHWKENQIRDQIKG 351 (681)
Q Consensus 296 ~g~~~~~g~~gr~l~v~~a~~~~~----------~~--------------~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~ 351 (681)
++..+ .++.|+|........ .. .......++|||+|||+.+|+++|+++|+.
T Consensus 243 ~g~~~----~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~ 318 (509)
T TIGR01642 243 DSIIY----SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLES 318 (509)
T ss_pred CCeEe----eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 98766 467777764321110 00 001223578999999999999999999999
Q ss_pred cCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEe
Q 005712 352 YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 352 ~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (681)
||.|..+.|+.+..+|.++|||||+|.+.++|..||..|||..|.|+.|.|.++.
T Consensus 319 ~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 319 FGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred cCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 9999999999998899999999999999999999999999999999998888753
No 32
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=1.1e-20 Score=181.68 Aligned_cols=165 Identities=22% Similarity=0.394 Sum_probs=150.4
Q ss_pred CCCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCCc
Q 005712 228 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307 (681)
Q Consensus 228 ~~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr 307 (681)
...+.|.|.-||.++|+++|+.+|...|+ |+.|++++| +-+|++-||+||.|.++.+|++|+..||+..+ +.+
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGe--iEScKLvRD-KitGqSLGYGFVNYv~p~DAe~AintlNGLrL----Q~K 111 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGE--IESCKLVRD-KITGQSLGYGFVNYVRPKDAEKAINTLNGLRL----QNK 111 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccc--eeeeeeeec-cccccccccceeeecChHHHHHHHhhhcceee----ccc
Confidence 34578999999999999999999999999 999999999 48999999999999999999999999999998 689
Q ss_pred cceecccCCCCCCChhhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q 005712 308 TVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387 (681)
Q Consensus 308 ~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai 387 (681)
+|+|.++.|..... ....|||.+||..+|..+|.++|++||.|..-+|+.|..+|.+||.+||.|+...+|+.||
T Consensus 112 TIKVSyARPSs~~I-----k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AI 186 (360)
T KOG0145|consen 112 TIKVSYARPSSDSI-----KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAI 186 (360)
T ss_pred eEEEEeccCChhhh-----cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHH
Confidence 99999999865443 3468999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCceecCCeeEEEE
Q 005712 388 NAINNKEFSDGNSKVKL 404 (681)
Q Consensus 388 ~~lng~~~~g~~i~v~~ 404 (681)
..|||..-.|..-.|.+
T Consensus 187 k~lNG~~P~g~tepItV 203 (360)
T KOG0145|consen 187 KGLNGQKPSGCTEPITV 203 (360)
T ss_pred HhccCCCCCCCCCCeEE
Confidence 99999988885433333
No 33
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.84 E-value=7.6e-21 Score=174.47 Aligned_cols=164 Identities=21% Similarity=0.417 Sum_probs=148.2
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~ 228 (681)
...||||+||+..++++-|.++|-+.|+|+.++|.+|+.+...+|||||+|.++|+|+=|++-||...|.|++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999997665
Q ss_pred C-------CCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCee
Q 005712 229 D-------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVV 301 (681)
Q Consensus 229 ~-------~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~ 301 (681)
. ..+|||+||.+.+.+..|.+.|+.+|. -+..-.+++++ .++.+++|+||.|.+.+.+.+|+..+++.-+
T Consensus 88 ~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~-l~~~P~i~rd~-~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l- 164 (203)
T KOG0131|consen 88 AHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGV-LISPPKIMRDP-DTGNPKGFGFINYASFEASDAAIGSMNGQYL- 164 (203)
T ss_pred cccccccccccccccccCcchhHHHHHHHHHhccc-cccCCcccccc-cCCCCCCCeEEechhHHHHHHHHHHhccchh-
Confidence 2 368999999999999999999999996 24445788874 7899999999999999999999999999877
Q ss_pred eCCCCccceecccCCCC
Q 005712 302 FGHPERTVKVAFAEPLR 318 (681)
Q Consensus 302 ~g~~gr~l~v~~a~~~~ 318 (681)
..++++|.++..+.
T Consensus 165 ---~nr~itv~ya~k~~ 178 (203)
T KOG0131|consen 165 ---CNRPITVSYAFKKD 178 (203)
T ss_pred ---cCCceEEEEEEecC
Confidence 57888888876543
No 34
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.83 E-value=1.3e-20 Score=184.40 Aligned_cols=154 Identities=30% Similarity=0.546 Sum_probs=141.2
Q ss_pred EEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCCC--
Q 005712 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED-- 229 (681)
Q Consensus 152 tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~~-- 229 (681)
.|||+|||..+++.+|+.+|++||+|++|.|+++ |+||...++..|..|+..|++..|+|..|.|+.++.
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 5899999999999999999999999999999976 999999999999999999999999999999976654
Q ss_pred --CCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCCc
Q 005712 230 --NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307 (681)
Q Consensus 230 --~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr 307 (681)
.++|+|+||.+.++..+|+..|+++|+ |.++.|+++ |+||.|...++|..|++.|++..+ +++
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygp--viecdivkd---------y~fvh~d~~eda~~air~l~~~~~----~gk 140 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGP--VIECDIVKD---------YAFVHFDRAEDAVEAIRGLDNTEF----QGK 140 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCC--ceeeeeecc---------eeEEEEeeccchHHHHhccccccc----ccc
Confidence 589999999999999999999999999 999999976 999999999999999999999999 799
Q ss_pred cceecccCCCCCCChhhcccc
Q 005712 308 TVKVAFAEPLREPDPEIMAHV 328 (681)
Q Consensus 308 ~l~v~~a~~~~~~~~~~~~~~ 328 (681)
++.|+.+.......+......
T Consensus 141 ~m~vq~stsrlrtapgmgDq~ 161 (346)
T KOG0109|consen 141 RMHVQLSTSRLRTAPGMGDQS 161 (346)
T ss_pred eeeeeeeccccccCCCCCCHH
Confidence 999999987766655444433
No 35
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.82 E-value=4.5e-20 Score=169.41 Aligned_cols=169 Identities=23% Similarity=0.372 Sum_probs=150.3
Q ss_pred CCCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCCc
Q 005712 228 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307 (681)
Q Consensus 228 ~~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr 307 (681)
....+|||+||+..++++.|+++|-+.|+ |.++.+.++. -+...+|||||+|.+.++|.-|++-|+...+ -++
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagp--Vv~i~iPkDr-v~~~~qGygF~Ef~~eedadYAikiln~VkL----Ygr 79 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGP--VVNLHIPKDR-VTQKHQGYGFAEFRTEEDADYAIKILNMVKL----YGR 79 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCc--eeeeecchhh-hcccccceeEEEEechhhhHHHHHHHHHHHh----cCc
Confidence 45679999999999999999999999999 9999999984 6778899999999999999999999997776 489
Q ss_pred cceecccCCCCCCChhhcccceeeeecCCCCCCCHHHHHhhhcccCcEEE-EEEeecCCCCCcceEEEEEeCCHHHHHHH
Q 005712 308 TVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIR-IVLARNMSTAKRKDYGFIDFSTHEAAVAC 386 (681)
Q Consensus 308 ~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~-v~i~~d~~~g~~rG~aFV~F~~~~~A~~A 386 (681)
+|+|..+...... ...+.+|||+||...+++..|.+.|+.||.+.. -.|+++..||.++|||||.|++.+.+.+|
T Consensus 80 pIrv~kas~~~~n----l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~a 155 (203)
T KOG0131|consen 80 PIRVNKASAHQKN----LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAA 155 (203)
T ss_pred eeEEEeccccccc----ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHH
Confidence 9999988733222 223479999999999999999999999998765 47889999999999999999999999999
Q ss_pred HHHhCCceecCCeeEEEEEec
Q 005712 387 INAINNKEFSDGNSKVKLRAR 407 (681)
Q Consensus 387 i~~lng~~~~g~~i~v~~~~~ 407 (681)
|..|||..+..+.++|++...
T Consensus 156 i~s~ngq~l~nr~itv~ya~k 176 (203)
T KOG0131|consen 156 IGSMNGQYLCNRPITVSYAFK 176 (203)
T ss_pred HHHhccchhcCCceEEEEEEe
Confidence 999999999999999998643
No 36
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.82 E-value=4e-20 Score=180.87 Aligned_cols=151 Identities=22% Similarity=0.422 Sum_probs=137.9
Q ss_pred CcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCCccce
Q 005712 231 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 310 (681)
Q Consensus 231 ~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr~l~ 310 (681)
.+|||+|||.++++.+|+.+|++||. |.+|.|+++ |+||..++...|..||..|++..+ .+..|.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygk--VlECDIvKN---------YgFVHiEdktaaedairNLhgYtL----hg~nIn 67 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGK--VLECDIVKN---------YGFVHIEDKTAAEDAIRNLHGYTL----HGVNIN 67 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCc--eEeeeeecc---------cceEEeecccccHHHHhhccccee----cceEEE
Confidence 37999999999999999999999999 999999966 999999999999999999999998 688898
Q ss_pred ecccCCCCCCChhhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 005712 311 VAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390 (681)
Q Consensus 311 v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~l 390 (681)
|..++.+. ..+++|+|+||...++.++|+..|++||+|..+.|+++ |+||.|+-.++|..||+.|
T Consensus 68 VeaSksKs-------k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l 132 (346)
T KOG0109|consen 68 VEASKSKS-------KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGL 132 (346)
T ss_pred EEeccccC-------CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcc
Confidence 88877652 23579999999999999999999999999999999876 8999999999999999999
Q ss_pred CCceecCCeeEEEEEeccCCC
Q 005712 391 NNKEFSDGNSKVKLRARLSNP 411 (681)
Q Consensus 391 ng~~~~g~~i~v~~~~~~~~~ 411 (681)
|+++|.|+.++|.+....-.+
T Consensus 133 ~~~~~~gk~m~vq~stsrlrt 153 (346)
T KOG0109|consen 133 DNTEFQGKRMHVQLSTSRLRT 153 (346)
T ss_pred cccccccceeeeeeecccccc
Confidence 999999999999987554443
No 37
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.82 E-value=1.1e-18 Score=179.75 Aligned_cols=174 Identities=24% Similarity=0.501 Sum_probs=142.9
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~ 228 (681)
+.++|||++|++++|++.|+++|.+||+|.+|.|++|+.+++++||+||+|++.+...++|.. ....|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 678999999999999999999999999999999999999999999999999999999999964 4556667665443321
Q ss_pred CCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCCcc
Q 005712 229 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 308 (681)
Q Consensus 229 ~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr~ 308 (681)
. +. ..... .+.
T Consensus 84 ~------------------------------------r~----------------------------~~~~~-----~~~ 94 (311)
T KOG4205|consen 84 S------------------------------------RE----------------------------DQTKV-----GRH 94 (311)
T ss_pred C------------------------------------cc----------------------------ccccc-----ccc
Confidence 1 00 00000 000
Q ss_pred ceecccCCCCCCChhhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 005712 309 VKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 388 (681)
Q Consensus 309 l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~ 388 (681)
...++|||++||..+++++|+++|.+||.|..+.++.|..+.+++||+||+|.+++++.+++
T Consensus 95 -----------------~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~- 156 (311)
T KOG4205|consen 95 -----------------LRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT- 156 (311)
T ss_pred -----------------cceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceec-
Confidence 03579999999999999999999999999999999999999999999999999999999886
Q ss_pred HhCCceecCCeeEEEEEeccCC
Q 005712 389 AINNKEFSDGNSKVKLRARLSN 410 (681)
Q Consensus 389 ~lng~~~~g~~i~v~~~~~~~~ 410 (681)
.+.-+.|+++.+.|..+.....
T Consensus 157 ~~~f~~~~gk~vevkrA~pk~~ 178 (311)
T KOG4205|consen 157 LQKFHDFNGKKVEVKRAIPKEV 178 (311)
T ss_pred ccceeeecCceeeEeeccchhh
Confidence 6677899999876665544433
No 38
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=6.1e-20 Score=177.16 Aligned_cols=184 Identities=23% Similarity=0.435 Sum_probs=157.9
Q ss_pred ccccCCCCCC------CCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHH
Q 005712 219 GKRCGTAPSE------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 292 (681)
Q Consensus 219 Gr~i~v~~~~------~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al 292 (681)
.|.|.|+++. +.++|||+-|...-.+++++.+|..+|. |++|.+.+- ..+.+||++||.|.+..+|.+||
T Consensus 2 nrpiqvkpadsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~--~~e~tvlrg--~dg~sKGCAFVKf~s~~eAqaAI 77 (371)
T KOG0146|consen 2 NRPIQVKPADSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGN--IEECTVLRG--PDGNSKGCAFVKFSSHAEAQAAI 77 (371)
T ss_pred CCCccccccccccCCccchhhhhhhhcccccHHHHHHHhcccCC--cceeEEecC--CCCCCCCceEEEeccchHHHHHH
Confidence 3566666554 4689999999999999999999999998 999999987 47899999999999999999999
Q ss_pred HHhCCCCeeeCCCCccceecccCCCCC-----------------------------------------------------
Q 005712 293 KRLQKPDVVFGHPERTVKVAFAEPLRE----------------------------------------------------- 319 (681)
Q Consensus 293 ~~l~g~~~~~g~~gr~l~v~~a~~~~~----------------------------------------------------- 319 (681)
..|+++..+.|. ...|.|++++..++
T Consensus 78 ~aLHgSqTmpGA-SSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~ 156 (371)
T KOG0146|consen 78 NALHGSQTMPGA-SSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMA 156 (371)
T ss_pred HHhcccccCCCC-ccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhh
Confidence 999999888774 45666776643322
Q ss_pred ------------------------------------------------------------------------------CC
Q 005712 320 ------------------------------------------------------------------------------PD 321 (681)
Q Consensus 320 ------------------------------------------------------------------------------~~ 321 (681)
..
T Consensus 157 ~~~~~~mQ~~aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQs 236 (371)
T KOG0146|consen 157 AFAAAQMQQMAALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQS 236 (371)
T ss_pred hhHHHHHHHHHHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCC
Confidence 00
Q ss_pred h------------------------------------------hhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEE
Q 005712 322 P------------------------------------------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIV 359 (681)
Q Consensus 322 ~------------------------------------------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~ 359 (681)
+ ......|.|||-.||.+..+.+|..+|-.||.|+..+
T Consensus 237 p~va~~lq~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaK 316 (371)
T KOG0146|consen 237 PTVADPLQQAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAK 316 (371)
T ss_pred ccccchhhhhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeee
Confidence 0 0012368999999999999999999999999999999
Q ss_pred EeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEec
Q 005712 360 LARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (681)
Q Consensus 360 i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~ 407 (681)
|..|+.|+.+|+|+||.|+++.+|++||.+|||..|+-++|+|.++..
T Consensus 317 VFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRP 364 (371)
T KOG0146|consen 317 VFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRP 364 (371)
T ss_pred eeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCc
Confidence 999999999999999999999999999999999999999999988643
No 39
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.81 E-value=3.2e-19 Score=193.66 Aligned_cols=226 Identities=21% Similarity=0.334 Sum_probs=172.1
Q ss_pred hccCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCC
Q 005712 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (681)
Q Consensus 145 ~~~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v 224 (681)
..+.+..+|||+|||+.+|++||..+| |||.|...+.|.+|...++++.+.|+-|.|
T Consensus 222 e~i~etgrlf~RNLpyt~~eed~~~lf-----------------------a~v~~~~~~~avka~~~~D~k~fqgrmlhv 278 (725)
T KOG0110|consen 222 EDISETGRLFVRNLPYTSTEEDLLKLF-----------------------AFVTFMFPEHAVKAYSELDGKVFQGRMLHV 278 (725)
T ss_pred hHHHhhhhhhhccCCccccHHHHHHhh-----------------------HHHhhhhhHHHHhhhhhccccccccceeee
Confidence 455678899999999999999999998 677777777777777777777777665553
Q ss_pred CCCCC---------------------------------------------------------------------------
Q 005712 225 APSED--------------------------------------------------------------------------- 229 (681)
Q Consensus 225 ~~~~~--------------------------------------------------------------------------- 229 (681)
.+...
T Consensus 279 lp~~~k~~~~~~~~~~~~~~k~~ke~~rk~~~~~~~~wn~l~~~~~ava~~~a~k~~v~k~~i~d~~~~gsavr~al~et 358 (725)
T KOG0110|consen 279 LPSKEKSTAKEDASELGSDYKKEKELKRKAASASFHSWNTLFMGANAVAGILAQKLGVEKSRILDGSLSGSAVRLALGET 358 (725)
T ss_pred cCcchhhhhhhhHhhcCCcHHHHHHhccccchhcceecccccccccHHHHHHHHHhCCeeeeeechhhcchHHHHHHHHh
Confidence 22110
Q ss_pred --------------------------CCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeC
Q 005712 230 --------------------------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS 283 (681)
Q Consensus 230 --------------------------~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~ 283 (681)
.+.++++|||..+..++|..+|..||. |..+.+. . . -.-++|.|.
T Consensus 359 r~~~e~~~~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~--i~rvllp-~---~---G~~aiv~fl 429 (725)
T KOG0110|consen 359 RVVQEVRRFFEENGVKLDAFSQAERSDTVILVKNLPAGTLSEELTEAFLRFGE--IGRVLLP-P---G---GTGAIVEFL 429 (725)
T ss_pred hhchhhhhhHHhhCcccccchhhhhhcceeeeccCccccccHHHHHHhhcccc--cceeecC-c---c---cceeeeeec
Confidence 256889999999999999999999998 8888443 2 1 124899999
Q ss_pred CHHHHHHHHHHhCCCCeeeCCCCccceecccCCCCC-----------------------------------CC-----h-
Q 005712 284 CHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLRE-----------------------------------PD-----P- 322 (681)
Q Consensus 284 s~e~A~~Al~~l~g~~~~~g~~gr~l~v~~a~~~~~-----------------------------------~~-----~- 322 (681)
...+|.+|++.|.-+.+. ..++.+.|+..... .. +
T Consensus 430 ~p~eAr~Afrklaysr~k----~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~ 505 (725)
T KOG0110|consen 430 NPLEARKAFRKLAYSRFK----SAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSL 505 (725)
T ss_pred CccchHHHHHHhchhhhc----cCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccc
Confidence 999999999998876652 33443433311000 00 0
Q ss_pred ----hhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCC---CCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 005712 323 ----EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMST---AKRKDYGFIDFSTHEAAVACINAINNKEF 395 (681)
Q Consensus 323 ----~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~---g~~rG~aFV~F~~~~~A~~Ai~~lng~~~ 395 (681)
......++|||.||++.+|.++|...|...|.|..|.|...+.. -.|.|||||+|.+.++|++|+++|+|+.|
T Consensus 506 a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvl 585 (725)
T KOG0110|consen 506 ARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVL 585 (725)
T ss_pred hhhhhccccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCcee
Confidence 00011234999999999999999999999999999988765422 13569999999999999999999999999
Q ss_pred cCCeeEEEEEe
Q 005712 396 SDGNSKVKLRA 406 (681)
Q Consensus 396 ~g~~i~v~~~~ 406 (681)
.|+.|.|.+..
T Consensus 586 dGH~l~lk~S~ 596 (725)
T KOG0110|consen 586 DGHKLELKISE 596 (725)
T ss_pred cCceEEEEecc
Confidence 99999988865
No 40
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=7.5e-19 Score=176.09 Aligned_cols=169 Identities=21% Similarity=0.422 Sum_probs=151.9
Q ss_pred CcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCCccce
Q 005712 231 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 310 (681)
Q Consensus 231 ~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr~l~ 310 (681)
+++||+.|.+++.++.|+..|..||+ |.+|.+..|+ -+++++|||||+|+-++.|..|+..||+..+ .+|.|+
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGP--IKSInMSWDp-~T~kHKgFAFVEYEvPEaAqLAlEqMNg~ml----GGRNiK 186 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGP--IKSINMSWDP-ATGKHKGFAFVEYEVPEAAQLALEQMNGQML----GGRNIK 186 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCC--cceeeccccc-ccccccceEEEEEeCcHHHHHHHHHhccccc----cCcccc
Confidence 58999999999999999999999999 9999999885 7999999999999999999999999999887 689999
Q ss_pred ecccCCCCCCChh------hcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHH
Q 005712 311 VAFAEPLREPDPE------IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAV 384 (681)
Q Consensus 311 v~~a~~~~~~~~~------~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~ 384 (681)
|.......+..+- .....++|||..+..+++++||+..|+.||.|..|.+.+.+.++.++||+||+|.+..+..
T Consensus 187 VgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~ 266 (544)
T KOG0124|consen 187 VGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQS 266 (544)
T ss_pred ccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchH
Confidence 9866555444332 2244689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCceecCCeeEEEEEe
Q 005712 385 ACINAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 385 ~Ai~~lng~~~~g~~i~v~~~~ 406 (681)
.||..||-..++|..++|--.+
T Consensus 267 eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 267 EAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred HHhhhcchhhcccceEeccccc
Confidence 9999999999999987765433
No 41
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.74 E-value=3.3e-17 Score=152.62 Aligned_cols=83 Identities=22% Similarity=0.438 Sum_probs=77.6
Q ss_pred cccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEE
Q 005712 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (681)
Q Consensus 325 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (681)
....++|||+|||+.+|+++|+++|++||.|..|.|+.+..+++++|||||+|++.++|++||+.||+..|.|+.|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34467999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred Eec
Q 005712 405 RAR 407 (681)
Q Consensus 405 ~~~ 407 (681)
+..
T Consensus 111 a~~ 113 (144)
T PLN03134 111 AND 113 (144)
T ss_pred CCc
Confidence 643
No 42
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.70 E-value=1.9e-17 Score=175.72 Aligned_cols=177 Identities=18% Similarity=0.333 Sum_probs=150.8
Q ss_pred CCCCCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCC
Q 005712 226 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 305 (681)
Q Consensus 226 ~~~~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~ 305 (681)
+..+.+++|+-.|+..++..+|.++|+..|. |..|+++.+ ..+++++|.+||+|.+.+....|+ .|.++.++
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gk--VrdVriI~D-r~s~rskgi~Yvef~D~~sVp~ai-aLsGqrll---- 246 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGK--VRDVRIIGD-RNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLL---- 246 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcC--cceeEeecc-ccchhhcceeEEEEecccchhhHh-hhcCCccc----
Confidence 3345688999999999999999999999999 999999999 589999999999999999999998 58888874
Q ss_pred CccceecccCCCCCCChh---------hcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEE
Q 005712 306 ERTVKVAFAEPLREPDPE---------IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFID 376 (681)
Q Consensus 306 gr~l~v~~a~~~~~~~~~---------~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~ 376 (681)
+.+|.|+..+..+..... ......+|+|+||..++++++|+.+|+.||.|..|.+++|..||.++||+||+
T Consensus 247 g~pv~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~ 326 (549)
T KOG0147|consen 247 GVPVIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFIT 326 (549)
T ss_pred CceeEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEE
Confidence 788888766543321110 01122349999999999999999999999999999999998899999999999
Q ss_pred eCCHHHHHHHHHHhCCceecCCeeEEEEEeccCC
Q 005712 377 FSTHEAAVACINAINNKEFSDGNSKVKLRARLSN 410 (681)
Q Consensus 377 F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~~~~ 410 (681)
|.+.++|.+|+.+|||.+|.|+.|+|.+......
T Consensus 327 f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~ 360 (549)
T KOG0147|consen 327 FVNKEDARKALEQLNGFELAGRLIKVSVVTERVD 360 (549)
T ss_pred EecHHHHHHHHHHhccceecCceEEEEEeeeecc
Confidence 9999999999999999999999999887554433
No 43
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.67 E-value=1.3e-15 Score=155.61 Aligned_cols=249 Identities=20% Similarity=0.294 Sum_probs=186.4
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCC--CeeeccccCCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKN--PVICGKRCGTA 225 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g--~~l~Gr~i~v~ 225 (681)
..++.|.|+|||+++||++|..++.+||.|+.+.+.+. +.-|||+|.+.++|...+..... ..|.++.|-+.
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkG------knQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq 99 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKG------KNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQ 99 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeecc------chhhhhhhcchhhhhheeecccccCccccCcceeeh
Confidence 37889999999999999999999999999999988754 23799999999999873221110 11222222111
Q ss_pred CC--------------------------------------------CCC--CcceeccccCcccHHHHHHHHhhcCccce
Q 005712 226 PS--------------------------------------------EDN--DTLFVGNICNTWTKEAIKQKLKDYGVEGV 259 (681)
Q Consensus 226 ~~--------------------------------------------~~~--~~L~VgnLp~~~te~~L~~~F~~~G~~~v 259 (681)
.+ .++ -+++|.++-..++-+-|.++|++||. |
T Consensus 100 ~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~--V 177 (492)
T KOG1190|consen 100 YSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGF--V 177 (492)
T ss_pred hhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcce--e
Confidence 00 001 24668899999999999999999998 7
Q ss_pred EEeeeccccccCCCcccE-EEEEeCCHHHHHHHHHHhCCCCeeeCCCCccceecccCCC----------CC--C------
Q 005712 260 ENINLVSDIQHEGLSRGF-AFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPL----------RE--P------ 320 (681)
Q Consensus 260 ~~i~i~~d~~~tg~skG~-aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr~l~v~~a~~~----------~~--~------ 320 (681)
..|.-+.. +.+| |.|+|.+...|..|-..|++..+.-+ .++|+++++.-. .. .
T Consensus 178 lKIiTF~K------nn~FQALvQy~d~~sAq~AK~aLdGqnIyng--cCtLrId~Sklt~LnvKynndkSRDyTnp~LP~ 249 (492)
T KOG1190|consen 178 LKIITFTK------NNGFQALVQYTDAVSAQAAKLALDGQNIYNG--CCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPV 249 (492)
T ss_pred EEEEEEec------ccchhhhhhccchhhHHHHHHhccCCcccCc--eeEEEeehhhcccceeeccccccccccCCCCCC
Confidence 77765533 2344 89999999999999999999988754 366666655211 00 0
Q ss_pred C-----------------------h---------------hhcc--cceeeeecCCCC-CCCHHHHHhhhcccCcEEEEE
Q 005712 321 D-----------------------P---------------EIMA--HVKTVFLDGVPP-HWKENQIRDQIKGYGDVIRIV 359 (681)
Q Consensus 321 ~-----------------------~---------------~~~~--~~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~ 359 (681)
. + .... ....|.|.||.. .+|.+.|..+|.-||.|.+|+
T Consensus 250 gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVk 329 (492)
T KOG1190|consen 250 GDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVK 329 (492)
T ss_pred CccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEE
Confidence 0 0 0000 146788999876 589999999999999999999
Q ss_pred EeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEeccCCCCCCCCC
Q 005712 360 LARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARLSNPMPKTQA 417 (681)
Q Consensus 360 i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~~~~~~~~~~~ 417 (681)
|+.++. --|.|.+.+...|+-|+..|+|..+.|+.|+|.+.+...-+.++..+
T Consensus 330 il~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq 382 (492)
T KOG1190|consen 330 ILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQ 382 (492)
T ss_pred eeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCC
Confidence 998853 35999999999999999999999999999999887776666665443
No 44
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=6.6e-15 Score=135.42 Aligned_cols=160 Identities=21% Similarity=0.349 Sum_probs=134.5
Q ss_pred CCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCCcc
Q 005712 229 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 308 (681)
Q Consensus 229 ~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr~ 308 (681)
..++|||+|||.++.+.+|.++|.+||. |..|.|... ...-.||||+|++..+|..||..-++..+ .+..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~--i~~ieLK~r----~g~ppfafVeFEd~RDAeDAiygRdGYdy----dg~r 74 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGR--IREIELKNR----PGPPPFAFVEFEDPRDAEDAIYGRDGYDY----DGCR 74 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcc--eEEEEeccC----CCCCCeeEEEecCccchhhhhhccccccc----Ccce
Confidence 4679999999999999999999999998 999988654 23467999999999999999999999988 7999
Q ss_pred ceecccCCCCCCC---------------------hhhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCC
Q 005712 309 VKVAFAEPLREPD---------------------PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTA 367 (681)
Q Consensus 309 l~v~~a~~~~~~~---------------------~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g 367 (681)
|+|.++..-.... +....+..+|.|.+||.+.+|+||++...+-|.|-...+.+|
T Consensus 75 LRVEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD---- 150 (241)
T KOG0105|consen 75 LRVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD---- 150 (241)
T ss_pred EEEEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc----
Confidence 9999986543211 222334568999999999999999999999999999999877
Q ss_pred CcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 368 KRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 368 ~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
|.+.|+|...++++-||.+|+...+.--..++-+.
T Consensus 151 ---g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yir 185 (241)
T KOG0105|consen 151 ---GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIR 185 (241)
T ss_pred ---cceeeeeeehhhHHHHHHhhccccccCcCcEeeEE
Confidence 47999999999999999999988877644444443
No 45
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=6e-15 Score=159.13 Aligned_cols=242 Identities=18% Similarity=0.335 Sum_probs=185.6
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhc-----------C-CeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCe
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERI-----------G-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPV 216 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~-----------G-~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~ 216 (681)
....++|+++|+.++++.+..+|..- | .|..|.|. ..+.||||+|.+.+.|..|+. +++..
T Consensus 174 q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n------~~~nfa~ie~~s~~~at~~~~-~~~~~ 246 (500)
T KOG0120|consen 174 QARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN------LEKNFAFIEFRSISEATEAMA-LDGII 246 (500)
T ss_pred hhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec------ccccceeEEecCCCchhhhhc-ccchh
Confidence 56789999999999999999999763 3 36666663 457799999999999999995 67777
Q ss_pred eeccccCCCCC-----------------------------CCCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccc
Q 005712 217 ICGKRCGTAPS-----------------------------EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSD 267 (681)
Q Consensus 217 l~Gr~i~v~~~-----------------------------~~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d 267 (681)
+.|..+.+... ....+++|++||..+++..++++...+|. +....++.+
T Consensus 247 f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~--lk~f~lv~d 324 (500)
T KOG0120|consen 247 FEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGP--LKAFRLVKD 324 (500)
T ss_pred hCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhccc--chhheeecc
Confidence 77765543111 12468999999999999999999999998 999999998
Q ss_pred cccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCCccceecccCCCCCCC-------------------hhhcccc
Q 005712 268 IQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPD-------------------PEIMAHV 328 (681)
Q Consensus 268 ~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr~l~v~~a~~~~~~~-------------------~~~~~~~ 328 (681)
. .++.++||||.+|.+......|+..||+..+ .++.|.|+.+-...... +.....+
T Consensus 325 ~-~~g~skg~af~ey~dpsvtd~A~agLnGm~l----gd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t 399 (500)
T KOG0120|consen 325 S-ATGNSKGFAFCEYCDPSVTDQAIAGLNGMQL----GDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPT 399 (500)
T ss_pred c-ccccccceeeeeeeCCcchhhhhcccchhhh----cCceeEeehhhccchhccccCCccccccccchhhhcccCCCcc
Confidence 5 5689999999999999999999999999887 35677666653222110 0011123
Q ss_pred eeeeecCCCC--CCC--------HHHHHhhhcccCcEEEEEEeecCC---CCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 005712 329 KTVFLDGVPP--HWK--------ENQIRDQIKGYGDVIRIVLARNMS---TAKRKDYGFIDFSTHEAAVACINAINNKEF 395 (681)
Q Consensus 329 ~~l~V~nLp~--~~t--------~~~L~~~F~~~G~v~~v~i~~d~~---~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~ 395 (681)
..|.+.|+=. ++. -++|+..|.+||.|..|.|++... -.-..|..||+|.+.+++++|.++|+|++|
T Consensus 400 ~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF 479 (500)
T KOG0120|consen 400 EVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKF 479 (500)
T ss_pred hhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCcee
Confidence 3444444311 111 156777889999999999988722 234567899999999999999999999999
Q ss_pred cCCeeEEEE
Q 005712 396 SDGNSKVKL 404 (681)
Q Consensus 396 ~g~~i~v~~ 404 (681)
.++.|.+.+
T Consensus 480 ~nRtVvtsY 488 (500)
T KOG0120|consen 480 ANRTVVASY 488 (500)
T ss_pred CCcEEEEEe
Confidence 999987765
No 46
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=1.7e-15 Score=146.63 Aligned_cols=163 Identities=22% Similarity=0.443 Sum_probs=138.8
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCe-eeccc--cCCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPV-ICGKR--CGTA 225 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~-l~Gr~--i~v~ 225 (681)
+.+.|||+.|...-.|+|++.+|+.||.|.+|.+.+. ..|.+||||||+|.+..+|+.||..|++.. +-|-. |.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg-~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRG-PDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecC-CCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 5578999999999999999999999999999999987 568999999999999999999999998642 11110 0000
Q ss_pred --------------------------------------------------------------------------------
Q 005712 226 -------------------------------------------------------------------------------- 225 (681)
Q Consensus 226 -------------------------------------------------------------------------------- 225 (681)
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence
Q ss_pred ----CCC-------------------------------------------------------------------------
Q 005712 226 ----PSE------------------------------------------------------------------------- 228 (681)
Q Consensus 226 ----~~~------------------------------------------------------------------------- 228 (681)
++.
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence 000
Q ss_pred ---------------------------CCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEE
Q 005712 229 ---------------------------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVM 281 (681)
Q Consensus 229 ---------------------------~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~ 281 (681)
+.++|||-.||.+..+.+|.+.|-.||. |.+.+++.| ..++.+|+|+||.
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGh--ivSaKVFvD-RATNQSKCFGFVS 333 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGH--IVSAKVFVD-RATNQSKCFGFVS 333 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccc--eeeeeeeeh-hccccccceeeEe
Confidence 0368999999999999999999999998 999999888 4799999999999
Q ss_pred eCCHHHHHHHHHHhCCCCeeeCCCCccceecccCCCCC
Q 005712 282 FSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLRE 319 (681)
Q Consensus 282 F~s~e~A~~Al~~l~g~~~~~g~~gr~l~v~~a~~~~~ 319 (681)
|.++.+|..||..||+-.| .-++|+|+...|+..
T Consensus 334 fDNp~SaQaAIqAMNGFQI----GMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 334 FDNPASAQAAIQAMNGFQI----GMKRLKVQLKRPKDA 367 (371)
T ss_pred cCCchhHHHHHHHhcchhh----hhhhhhhhhcCcccc
Confidence 9999999999999999988 578999988877654
No 47
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.59 E-value=6.3e-14 Score=147.22 Aligned_cols=160 Identities=21% Similarity=0.271 Sum_probs=121.7
Q ss_pred CcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCCccce
Q 005712 231 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 310 (681)
Q Consensus 231 ~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr~l~ 310 (681)
..|.+.+|||++|+++|.++|+.++ |+++.+.+. +++..|-|||+|.+.+++.+|+++-... + ..+-|.
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~~---I~~~~~~r~---~Gr~sGeA~Ve~~seedv~~AlkkdR~~-m----g~RYIE 79 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNCG---IENLEIPRR---NGRPSGEAYVEFTSEEDVEKALKKDRES-M----GHRYIE 79 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcCc---eeEEEEecc---CCCcCcceEEEeechHHHHHHHHhhHHH-h----CCceEE
Confidence 4577899999999999999999998 888777664 7999999999999999999999843222 2 245555
Q ss_pred ecccCCCCC------CChhhcccceeeeecCCCCCCCHHHHHhhhcccCcEEE-EEEeecCCCCCcceEEEEEeCCHHHH
Q 005712 311 VAFAEPLRE------PDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIR-IVLARNMSTAKRKDYGFIDFSTHEAA 383 (681)
Q Consensus 311 v~~a~~~~~------~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~-v~i~~d~~~g~~rG~aFV~F~~~~~A 383 (681)
|-.+..... ..+........|.+++||+.||++||.+||+..-.|.. |.++.+ ..+++.|-|||+|++.+.|
T Consensus 80 Vf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~a 158 (510)
T KOG4211|consen 80 VFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESA 158 (510)
T ss_pred EEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHH
Confidence 544432211 11122245678999999999999999999998866655 445555 4678999999999999999
Q ss_pred HHHHHHhCCceecCCeeEEE
Q 005712 384 VACINAINNKEFSDGNSKVK 403 (681)
Q Consensus 384 ~~Ai~~lng~~~~g~~i~v~ 403 (681)
++||.. |...|+-|-|.|-
T Consensus 159 e~Al~r-hre~iGhRYIEvF 177 (510)
T KOG4211|consen 159 EIALGR-HRENIGHRYIEVF 177 (510)
T ss_pred HHHHHH-HHHhhccceEEee
Confidence 999854 5556776765553
No 48
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.58 E-value=4.6e-15 Score=138.19 Aligned_cols=81 Identities=27% Similarity=0.604 Sum_probs=77.1
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~ 228 (681)
.+++|||+|||+++|+++|+++|++||.|++|+|++++.|++++|||||+|.+.++|++||+.|++..|.|+.|.|.++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999987765
Q ss_pred C
Q 005712 229 D 229 (681)
Q Consensus 229 ~ 229 (681)
.
T Consensus 113 ~ 113 (144)
T PLN03134 113 D 113 (144)
T ss_pred c
Confidence 4
No 49
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.58 E-value=3.3e-14 Score=136.39 Aligned_cols=206 Identities=16% Similarity=0.302 Sum_probs=143.9
Q ss_pred CCCEEEEcCCCccCCHHHHHH----HHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRK----VFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~----~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v 224 (681)
...||||.||+..+..++|+. +|++||.|.+|... .|.+.+|-|||.|.+.+.|..|+.+|+|..+.|+.+++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 445999999999999999888 99999999999886 45789999999999999999999999999999999999
Q ss_pred CCCCCCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCC
Q 005712 225 APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 304 (681)
Q Consensus 225 ~~~~~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~ 304 (681)
..+.....++..--+.-+..+ -. ....++.... ......+..+. ++...+
T Consensus 85 qyA~s~sdii~~~~~~~v~~~---------~k--~~~~~~~~~~-~~~~~ng~~~~--------------~~~~~~---- 134 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKE---------KK--INGEILARIK-QPLDTNGHFYN--------------MNRMNL---- 134 (221)
T ss_pred ecccCccchhhccCceecccc---------Cc--cccccccccC-Ccccccccccc--------------cccccC----
Confidence 988876655433211000000 00 0000000000 00000010000 111111
Q ss_pred CCccceecccCCCCCCChhhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHH
Q 005712 305 PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAV 384 (681)
Q Consensus 305 ~gr~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~ 384 (681)
...+ . .........||+.|||.+++.+.|..+|.+|.-...|+++... .+.|||+|.+...|.
T Consensus 135 -----p~p~------~-~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~ 197 (221)
T KOG4206|consen 135 -----PPPF------L-AQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQAS 197 (221)
T ss_pred -----CCCc------c-ccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhH
Confidence 0000 0 1123346899999999999999999999999988999887663 679999999999999
Q ss_pred HHHHHhCCceec-CCeeEEEE
Q 005712 385 ACINAINNKEFS-DGNSKVKL 404 (681)
Q Consensus 385 ~Ai~~lng~~~~-g~~i~v~~ 404 (681)
.|..+|.+..|. ...+.|.+
T Consensus 198 ~a~~~lq~~~it~~~~m~i~~ 218 (221)
T KOG4206|consen 198 AAQQALQGFKITKKNTMQITF 218 (221)
T ss_pred HHhhhhccceeccCceEEecc
Confidence 999999998877 55555543
No 50
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=1.3e-14 Score=133.47 Aligned_cols=140 Identities=19% Similarity=0.313 Sum_probs=122.4
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
..+++|+|+|||.++-+.+|..+|.+||.|+.|.|.. .-..-.||||+|.+..+|..||..-++..+.|..|+|..+
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~---r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKN---RPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEecc---CCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 4678999999999999999999999999999999843 3345789999999999999999999999999999988644
Q ss_pred CC--------------------------------CCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcc
Q 005712 228 ED--------------------------------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSR 275 (681)
Q Consensus 228 ~~--------------------------------~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~sk 275 (681)
.. ..++.|.+||.+.+|++|++++.+.|. |.-..+.++
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGd--vCfadv~rD-------- 150 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGD--VCFADVQRD-------- 150 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCC--eeeeeeecc--------
Confidence 31 247899999999999999999999998 777777766
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCCCe
Q 005712 276 GFAFVMFSCHVDAMAAYKRLQKPDV 300 (681)
Q Consensus 276 G~aFV~F~s~e~A~~Al~~l~g~~~ 300 (681)
+.+.|+|...++.+-|+..|..+.+
T Consensus 151 g~GvV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 151 GVGVVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred cceeeeeeehhhHHHHHHhhccccc
Confidence 5899999999999999998887655
No 51
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.54 E-value=3.7e-13 Score=136.17 Aligned_cols=240 Identities=20% Similarity=0.222 Sum_probs=190.0
Q ss_pred hccCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhc--CCCeeecccc
Q 005712 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM--KNPVICGKRC 222 (681)
Q Consensus 145 ~~~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l--~g~~l~Gr~i 222 (681)
.+...+-.|.|++|-..++|.+|.+.++.||.|..|.++.. +..|.|+|.+.+.|..|+... +...+.|...
T Consensus 26 hk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~------~r~alvefedi~~akn~Vnfaa~n~i~i~gq~A 99 (494)
T KOG1456|consen 26 HKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH------KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQA 99 (494)
T ss_pred CCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc------cceeeeeeccccchhhheehhccCcccccCchh
Confidence 44557789999999999999999999999999999888643 457999999999999998643 2233444433
Q ss_pred CCCC-------------CCCCCcce--eccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHH
Q 005712 223 GTAP-------------SEDNDTLF--VGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVD 287 (681)
Q Consensus 223 ~v~~-------------~~~~~~L~--VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~ 287 (681)
.... +..+..|. |-|--..+|-+-|..+...+|. |..|.|++. + ---|.|+|.+.+.
T Consensus 100 l~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~Gk--VlRIvIfkk---n---gVQAmVEFdsv~~ 171 (494)
T KOG1456|consen 100 LFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGK--VLRIVIFKK---N---GVQAMVEFDSVEV 171 (494)
T ss_pred hcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCc--eEEEEEEec---c---ceeeEEeechhHH
Confidence 3222 22333343 3455567999999999999998 999999875 2 2358999999999
Q ss_pred HHHHHHHhCCCCeeeCCCCccceecccCCCCCC-----------------------------------------------
Q 005712 288 AMAAYKRLQKPDVVFGHPERTVKVAFAEPLREP----------------------------------------------- 320 (681)
Q Consensus 288 A~~Al~~l~g~~~~~g~~gr~l~v~~a~~~~~~----------------------------------------------- 320 (681)
|++|..+||+.+|..+ -.+|++.+++|.+..
T Consensus 172 AqrAk~alNGADIYsG--CCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h 249 (494)
T KOG1456|consen 172 AQRAKAALNGADIYSG--CCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGH 249 (494)
T ss_pred HHHHHhhccccccccc--ceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCC
Confidence 9999999999999876 478888888654320
Q ss_pred ------------------------------ChhhcccceeeeecCCCC-CCCHHHHHhhhcccCcEEEEEEeecCCCCCc
Q 005712 321 ------------------------------DPEIMAHVKTVFLDGVPP-HWKENQIRDQIKGYGDVIRIVLARNMSTAKR 369 (681)
Q Consensus 321 ------------------------------~~~~~~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~ 369 (681)
.+......+.+.|-+|.. ..+.+.|..+|-.||.|.+|++++.+
T Consensus 250 ~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk----- 324 (494)
T KOG1456|consen 250 SGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK----- 324 (494)
T ss_pred CCCcccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----
Confidence 001113356899999987 46788999999999999999999874
Q ss_pred ceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 370 KDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 370 rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
.|.|.|++.++.+.++||..||+..+.|.+|.|.+.
T Consensus 325 ~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~S 360 (494)
T KOG1456|consen 325 PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVS 360 (494)
T ss_pred cceeEEEcCcHHHHHHHHHHhccCccccceEEEeec
Confidence 578999999999999999999999999988777664
No 52
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.53 E-value=1.4e-13 Score=138.52 Aligned_cols=198 Identities=18% Similarity=0.328 Sum_probs=139.9
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeE--------EEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeecc
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVI--------EVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGK 220 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~--------~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr 220 (681)
-...|||.|||.++|.+++.++|++||-|. .|+|.++ ..|+.+|=|.+.|-..+++..|++.|+...|.|+
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd-~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD-NQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec-CCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 456799999999999999999999999873 4888888 4599999999999999999999999999999999
Q ss_pred ccCCCCCCCCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCe
Q 005712 221 RCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDV 300 (681)
Q Consensus 221 ~i~v~~~~~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~ 300 (681)
.|+|..+. |+.-|.-.+ +++.++- ..-.+-++.++...+
T Consensus 212 ~~rVerAk----------------------fq~Kge~~~-----------~~k~k~k--------~~~~kk~~k~q~k~~ 250 (382)
T KOG1548|consen 212 KLRVERAK----------------------FQMKGEYDA-----------SKKEKGK--------CKDKKKLKKQQQKLL 250 (382)
T ss_pred EEEEehhh----------------------hhhccCcCc-----------ccccccc--------cccHHHHHHHHHhhc
Confidence 99887654 222221000 0000000 000111111222111
Q ss_pred eeCCCCccceecccCCCCCCChhhcccceeeeecCCCC----CCC-------HHHHHhhhcccCcEEEEEEeecCCCCCc
Q 005712 301 VFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPP----HWK-------ENQIRDQIKGYGDVIRIVLARNMSTAKR 369 (681)
Q Consensus 301 ~~g~~gr~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~----~~t-------~~~L~~~F~~~G~v~~v~i~~d~~~g~~ 369 (681)
- |. +.. ..+......++|.|+||-. ..+ .++|++.+.+||.|..|.|.-. .+
T Consensus 251 d-----------w~-pd~-~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~----hP 313 (382)
T KOG1548|consen 251 D-----------WR-PDR-DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR----HP 313 (382)
T ss_pred c-----------cC-CCc-cccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc----CC
Confidence 0 00 000 1122223457888888843 223 3677888999999999988533 46
Q ss_pred ceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 370 KDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 370 rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
.|.+-|.|.+.++|..||+.|+|+.|.||.|..++.
T Consensus 314 dGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~ 349 (382)
T KOG1548|consen 314 DGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIW 349 (382)
T ss_pred CceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEe
Confidence 789999999999999999999999999999988864
No 53
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=2.2e-13 Score=134.57 Aligned_cols=99 Identities=22% Similarity=0.350 Sum_probs=88.0
Q ss_pred ccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
..-++|||..|++++++..|+..|+.||.|+.|.|+++..||+++|||||+|++..++.+|.+..+|.+|+|+.|.|.+.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred eccCCCCCCCCCCCCCCCC
Q 005712 406 ARLSNPMPKTQAVKGGMSG 424 (681)
Q Consensus 406 ~~~~~~~~~~~~~~gg~~g 424 (681)
...+.+-..+..-+||.+|
T Consensus 179 RgRTvkgW~PRRLGGGLGg 197 (335)
T KOG0113|consen 179 RGRTVKGWLPRRLGGGLGG 197 (335)
T ss_pred ccccccccccccccCCcCC
Confidence 7766655555555555443
No 54
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.48 E-value=2.3e-13 Score=138.09 Aligned_cols=252 Identities=18% Similarity=0.218 Sum_probs=178.1
Q ss_pred hhhccCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeecccc
Q 005712 143 KDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRC 222 (681)
Q Consensus 143 ~~~~~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i 222 (681)
+......+..|-.++||+..++.+|..+|+-.--+.-.+.+.....|+..|.|.|.|.+.|.-..||+. +...+.++.|
T Consensus 53 ~~~~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryi 131 (508)
T KOG1365|consen 53 KNHSADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYI 131 (508)
T ss_pred hccccCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCce
Confidence 344455677889999999999999999998643332222223335678889999999999999999985 6666677766
Q ss_pred CCCCCC----------------------CCCcceeccccCcccHHHHHHHHhhcCc--cceEEeeeccccccCCCcccEE
Q 005712 223 GTAPSE----------------------DNDTLFVGNICNTWTKEAIKQKLKDYGV--EGVENINLVSDIQHEGLSRGFA 278 (681)
Q Consensus 223 ~v~~~~----------------------~~~~L~VgnLp~~~te~~L~~~F~~~G~--~~v~~i~i~~d~~~tg~skG~a 278 (681)
.|-.+. ..-.|.+++||+++|..++.++|...-. .+.+.|.++.. .+|+..|-|
T Consensus 132 evYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r--pdgrpTGdA 209 (508)
T KOG1365|consen 132 EVYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR--PDGRPTGDA 209 (508)
T ss_pred eeeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC--CCCCcccce
Confidence 653221 1235667999999999999999973321 12556666654 478999999
Q ss_pred EEEeCCHHHHHHHHHHhCCCCeeeCCCCccceeccc----------------------CCCCCCCh----hhcccceeee
Q 005712 279 FVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFA----------------------EPLREPDP----EIMAHVKTVF 332 (681)
Q Consensus 279 FV~F~s~e~A~~Al~~l~g~~~~~g~~gr~l~v~~a----------------------~~~~~~~~----~~~~~~~~l~ 332 (681)
||.|...++|..|+.+..+.. ..|-|.+-.+ .+.....+ .......+|.
T Consensus 210 Fvlfa~ee~aq~aL~khrq~i-----GqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvR 284 (508)
T KOG1365|consen 210 FVLFACEEDAQFALRKHRQNI-----GQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVR 284 (508)
T ss_pred EEEecCHHHHHHHHHHHHHHH-----hHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeE
Confidence 999999999999997533321 0111111100 00000000 1112256899
Q ss_pred ecCCCCCCCHHHHHhhhcccCc-EEE--EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEE
Q 005712 333 LDGVPPHWKENQIRDQIKGYGD-VIR--IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (681)
Q Consensus 333 V~nLp~~~t~~~L~~~F~~~G~-v~~--v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~ 403 (681)
+++||+.++.++|.+||..|-. |.. |.++.+ ..|+..|-|||+|.++++|.+|....+++..+.|.|.|-
T Consensus 285 LRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvf 357 (508)
T KOG1365|consen 285 LRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVF 357 (508)
T ss_pred ecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEe
Confidence 9999999999999999998853 333 666666 468999999999999999999999988887777776553
No 55
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.48 E-value=1.8e-12 Score=132.82 Aligned_cols=235 Identities=17% Similarity=0.289 Sum_probs=181.7
Q ss_pred CEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccc-eEEEEecchhHHHHHHHhcCCCeeeccccC------
Q 005712 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKG-YAFVKFANKEHAKRALTEMKNPVICGKRCG------ 223 (681)
Q Consensus 151 ~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG-~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~------ 223 (681)
-+++|.|+-+-+|-+=|..+|++||.|..|.-+.. +.+ -|.|+|.+.+.|+.|..+|+|..|..-.|.
T Consensus 151 Lr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~K-----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~S 225 (492)
T KOG1190|consen 151 LRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTK-----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFS 225 (492)
T ss_pred EEEEeccceeeeEHHHHHHHHhhcceeEEEEEEec-----ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehh
Confidence 47899999999999999999999999987655432 223 389999999999999999988765432211
Q ss_pred ------CCC--------------CC---------------------------------------------CCCcceeccc
Q 005712 224 ------TAP--------------SE---------------------------------------------DNDTLFVGNI 238 (681)
Q Consensus 224 ------v~~--------------~~---------------------------------------------~~~~L~VgnL 238 (681)
|+. .. .+..|.|.||
T Consensus 226 klt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnl 305 (492)
T KOG1190|consen 226 KLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNL 305 (492)
T ss_pred hcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecC
Confidence 000 00 0245667777
Q ss_pred cC-cccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCCccceecccCCC
Q 005712 239 CN-TWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPL 317 (681)
Q Consensus 239 p~-~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr~l~v~~a~~~ 317 (681)
.. .+|.+.|..+|.-||. |..|+|+.+. +-.|.|++.+...|..|+..|++..+. ++.|+|.+++..
T Consensus 306 n~~~VT~d~LftlFgvYGd--VqRVkil~nk------kd~ALIQmsd~~qAqLA~~hL~g~~l~----gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 306 NEEAVTPDVLFTLFGVYGD--VQRVKILYNK------KDNALIQMSDGQQAQLAMEHLEGHKLY----GKKLRVTLSKHT 373 (492)
T ss_pred chhccchhHHHHHHhhhcc--eEEEEeeecC------CcceeeeecchhHHHHHHHHhhcceec----CceEEEeeccCc
Confidence 54 5899999999999998 9999999874 357999999999999999999999984 788998887532
Q ss_pred CCCCh------------------------------hhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCC
Q 005712 318 REPDP------------------------------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTA 367 (681)
Q Consensus 318 ~~~~~------------------------------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g 367 (681)
..+.+ ....++.+|.+.|+|.++++++|+..|..-|-+....... +
T Consensus 374 ~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff----~ 449 (492)
T KOG1190|consen 374 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF----Q 449 (492)
T ss_pred cccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec----C
Confidence 21110 1123456899999999999999999999988665544322 2
Q ss_pred CcceEEEEEeCCHHHHHHHHHHhCCceecCC-eeEEEEEe
Q 005712 368 KRKDYGFIDFSTHEAAVACINAINNKEFSDG-NSKVKLRA 406 (681)
Q Consensus 368 ~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~-~i~v~~~~ 406 (681)
+.+-+|.+.+++.+.|..|+..|+++.+... .++|++.+
T Consensus 450 kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 450 KDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSK 489 (492)
T ss_pred CCcceeecccCChhHhhhhccccccccCCCCceEEEEeec
Confidence 3456899999999999999999999988875 77777653
No 56
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.44 E-value=4.1e-13 Score=108.86 Aligned_cols=70 Identities=27% Similarity=0.604 Sum_probs=66.8
Q ss_pred eeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeE
Q 005712 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 401 (681)
Q Consensus 331 l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~ 401 (681)
|||+|||..+|+++|+++|++||.|..+.+..+ .++..+++|||+|.+.++|.+|++.|||..|.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 6789999999999999999999999999999998864
No 57
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=2.1e-13 Score=131.06 Aligned_cols=86 Identities=21% Similarity=0.426 Sum_probs=77.2
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEe
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (681)
..++|||++|+|.++.+.|+++|++||.|+++.|+.|+.++++|||+||+|.+.++|.+|++..| -.|+||+..|.|+.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccchhh
Confidence 45899999999999999999999999999999999999999999999999999999999997655 47999999999875
Q ss_pred ccCCCCC
Q 005712 407 RLSNPMP 413 (681)
Q Consensus 407 ~~~~~~~ 413 (681)
.-.++.+
T Consensus 90 lg~~pR~ 96 (247)
T KOG0149|consen 90 LGGKPRP 96 (247)
T ss_pred hcCccCC
Confidence 5444444
No 58
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.44 E-value=2.3e-13 Score=110.40 Aligned_cols=70 Identities=34% Similarity=0.743 Sum_probs=66.7
Q ss_pred EEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccC
Q 005712 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (681)
Q Consensus 153 VfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~ 223 (681)
|||+|||.++|+++|+++|++||.|..+.++.+ .++.++++|||+|.+.++|.+|++.|++..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 7889999999999999999999999999999998763
No 59
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.42 E-value=3e-13 Score=130.00 Aligned_cols=77 Identities=36% Similarity=0.684 Sum_probs=70.4
Q ss_pred CCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 150 ~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
-+.|||++|+++++.+.|+++|++||+|+++.|+.|+.|++||||+||+|++.++|.+|++. .+.+|.||+..+..+
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLA 88 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchh
Confidence 46899999999999999999999999999999999999999999999999999999999985 557899998765443
No 60
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=2e-12 Score=118.68 Aligned_cols=73 Identities=16% Similarity=0.394 Sum_probs=68.8
Q ss_pred ceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 328 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
.++|||+||+..+++.+|..+|..||.|..|+|.+. +-|||||+|+++.+|..|+..|+|+.|.|..|+|++.
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 579999999999999999999999999999999876 4789999999999999999999999999999999875
No 61
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=2.8e-13 Score=131.45 Aligned_cols=149 Identities=18% Similarity=0.330 Sum_probs=124.8
Q ss_pred CcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCCccce
Q 005712 231 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 310 (681)
Q Consensus 231 ~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr~l~ 310 (681)
.++||++|++.+.+.+|..+|..+|. +..+.+. .+|+||+|.+..+|..|+..|++..+. +..+.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~--~~d~~mk---------~gf~fv~fed~rda~Dav~~l~~~~l~----~e~~v 66 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGK--IPDADMK---------NGFGFVEFEDPRDADDAVHDLDGKELC----GERLV 66 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccc--cccceee---------cccceeccCchhhhhcccchhcCceec----ceeee
Confidence 47899999999999999999999997 7777664 468999999999999999999999884 34477
Q ss_pred ecccCCCCCC---------------ChhhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEE
Q 005712 311 VAFAEPLREP---------------DPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFI 375 (681)
Q Consensus 311 v~~a~~~~~~---------------~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV 375 (681)
|.++...+.. ......+.++|+|.+|+..+.|++|++.|.++|.++...+ .++++||
T Consensus 67 ve~~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v 138 (216)
T KOG0106|consen 67 VEHARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFV 138 (216)
T ss_pred eecccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccce
Confidence 7777642110 1112345678999999999999999999999999865554 3568999
Q ss_pred EeCCHHHHHHHHHHhCCceecCCeeEE
Q 005712 376 DFSTHEAAVACINAINNKEFSDGNSKV 402 (681)
Q Consensus 376 ~F~~~~~A~~Ai~~lng~~~~g~~i~v 402 (681)
+|++.++|..||..|++..+.++.|++
T Consensus 139 ~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 139 EFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred eehhhhhhhhcchhccchhhcCceeee
Confidence 999999999999999999999999887
No 62
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.39 E-value=8.3e-13 Score=140.50 Aligned_cols=81 Identities=15% Similarity=0.285 Sum_probs=76.7
Q ss_pred ccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
...++|||+|||+++|+++|+++|+.||.|+.|+|+++..+++++|||||+|.++++|.+||+.||+..|.++.|+|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred e
Q 005712 406 A 406 (681)
Q Consensus 406 ~ 406 (681)
.
T Consensus 185 ~ 185 (346)
T TIGR01659 185 R 185 (346)
T ss_pred c
Confidence 3
No 63
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.39 E-value=7e-13 Score=124.38 Aligned_cols=80 Identities=15% Similarity=0.348 Sum_probs=76.4
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEe
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (681)
....|.|-||.+.+|.++|+.+|++||.|-.|.|++|..|+.++|||||.|....+|+.|+++|+|.++.|+.|.|+++.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999988764
No 64
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.35 E-value=4.5e-12 Score=103.09 Aligned_cols=70 Identities=24% Similarity=0.566 Sum_probs=64.6
Q ss_pred eeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeE
Q 005712 331 VFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 401 (681)
Q Consensus 331 l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~ 401 (681)
|+|+|||+.+++++|+++|+.+|.|..+.+..++. +.++|+|||+|.+.++|.+|+..+++..|.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 78999999999999999999999999999999976 89999999999999999999999999999998763
No 65
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=1.8e-12 Score=125.00 Aligned_cols=80 Identities=20% Similarity=0.410 Sum_probs=74.9
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEe
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (681)
..++|.|.||+.++++.+|+++|.+||.|.+|.|.+|+.||.+||||||.|.+.++|.+||..|||.-+..=.|.|+|..
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 45789999999999999999999999999999999999999999999999999999999999999998888777777753
No 66
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.34 E-value=1.4e-11 Score=127.04 Aligned_cols=169 Identities=20% Similarity=0.313 Sum_probs=139.2
Q ss_pred CCCCCcceeccccCcccHHHHHHHHhh-cCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCC
Q 005712 227 SEDNDTLFVGNICNTWTKEAIKQKLKD-YGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 305 (681)
Q Consensus 227 ~~~~~~L~VgnLp~~~te~~L~~~F~~-~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~ 305 (681)
+...+.+||.|||+++.|.+|++++.. .|+ |+.|.|+.| .+++++|+|.|+|++++.+++|+..||...+ .
T Consensus 41 ~~r~R~vfItNIpyd~rWqdLKdLvrekvGe--v~yveLl~D--~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~----~ 112 (608)
T KOG4212|consen 41 AARDRSVFITNIPYDYRWQDLKDLVREKVGE--VEYVELLFD--ESGKARGCAVVEFKDPENVQKALEKLNKYEV----N 112 (608)
T ss_pred ccccceEEEecCcchhhhHhHHHHHHHhcCc--eEeeeeecc--cCCCcCCceEEEeeCHHHHHHHHHHhhhccc----c
Confidence 334567999999999999999999964 567 999999998 6899999999999999999999999999988 5
Q ss_pred CccceecccCCCCC--------------------------------------------CC------------h-------
Q 005712 306 ERTVKVAFAEPLRE--------------------------------------------PD------------P------- 322 (681)
Q Consensus 306 gr~l~v~~a~~~~~--------------------------------------------~~------------~------- 322 (681)
+++|.|+-..-.+. .. .
T Consensus 113 GR~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~ 192 (608)
T KOG4212|consen 113 GRELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSS 192 (608)
T ss_pred CceEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccch
Confidence 78887764421100 00 0
Q ss_pred ------------h-----hcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHH
Q 005712 323 ------------E-----IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVA 385 (681)
Q Consensus 323 ------------~-----~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~ 385 (681)
. ......++||.||.+.+....|++.|.-.|.|+.|.+-.|+. +.++|||.++|+.+-.|..
T Consensus 193 ~~~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavq 271 (608)
T KOG4212|consen 193 NYNLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQ 271 (608)
T ss_pred hhhcccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccc-cccCCeeEEEecchHHHHH
Confidence 0 012246899999999999999999999999999999988864 6899999999999999999
Q ss_pred HHHHhCCceecCCeeEEEE
Q 005712 386 CINAINNKEFSDGNSKVKL 404 (681)
Q Consensus 386 Ai~~lng~~~~g~~i~v~~ 404 (681)
||..|++.-+..++..+.+
T Consensus 272 aIsml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 272 AISMLDRQGLFDRRMTVRL 290 (608)
T ss_pred HHHhhccCCCccccceeec
Confidence 9999998777777766665
No 67
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.33 E-value=2.4e-12 Score=104.77 Aligned_cols=69 Identities=41% Similarity=0.693 Sum_probs=63.9
Q ss_pred EEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeecccc
Q 005712 153 IFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRC 222 (681)
Q Consensus 153 VfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i 222 (681)
|+|+|||+.+|+++|.++|+.||.|..|++..++. +.++++|||+|.+.++|.+|++.+++..+.|+.|
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l 69 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKL 69 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEc
Confidence 79999999999999999999999999999999876 8999999999999999999999999899999876
No 68
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=2.2e-12 Score=124.42 Aligned_cols=81 Identities=23% Similarity=0.391 Sum_probs=76.8
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~ 228 (681)
++++|-|.||+.+++|.+|++||.+||.|..|.|.+|+.||.++|||||.|.+.++|++||+.||+.=.....|.|.++.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 78899999999999999999999999999999999999999999999999999999999999999988888888887776
Q ss_pred C
Q 005712 229 D 229 (681)
Q Consensus 229 ~ 229 (681)
+
T Consensus 268 P 268 (270)
T KOG0122|consen 268 P 268 (270)
T ss_pred C
Confidence 5
No 69
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.33 E-value=1.7e-13 Score=126.12 Aligned_cols=82 Identities=26% Similarity=0.492 Sum_probs=77.3
Q ss_pred ccCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCC
Q 005712 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (681)
Q Consensus 146 ~~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~ 225 (681)
.-.++..|||+|||++.||.||..+|++||+|+.|.|++|+.||+|+||||++|.+..+...|+..|||..|.||.|+|.
T Consensus 31 ~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVD 110 (219)
T KOG0126|consen 31 EYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVD 110 (219)
T ss_pred hcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEee
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CC
Q 005712 226 PS 227 (681)
Q Consensus 226 ~~ 227 (681)
..
T Consensus 111 Hv 112 (219)
T KOG0126|consen 111 HV 112 (219)
T ss_pred ec
Confidence 43
No 70
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=4.7e-12 Score=126.74 Aligned_cols=83 Identities=13% Similarity=0.270 Sum_probs=75.2
Q ss_pred hcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEE
Q 005712 324 IMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (681)
Q Consensus 324 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~ 403 (681)
.....++|+|.|||+...+-||+.+|.+||.|.+|.|+.+. ..||||+||+|++.++|.+|-++|||..|.||+|.|.
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 34456899999999999999999999999999999999884 5689999999999999999999999999999998887
Q ss_pred EEecc
Q 005712 404 LRARL 408 (681)
Q Consensus 404 ~~~~~ 408 (681)
.+...
T Consensus 170 ~ATar 174 (376)
T KOG0125|consen 170 NATAR 174 (376)
T ss_pred ccchh
Confidence 65544
No 71
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=4.2e-12 Score=110.44 Aligned_cols=83 Identities=16% Similarity=0.345 Sum_probs=76.7
Q ss_pred hccCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCC
Q 005712 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (681)
Q Consensus 145 ~~~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v 224 (681)
.....++||||+||++-+||++|.++|+++|+|..|.+=.|+.+..+=|||||+|.+.++|..||.-++++.|..++|.+
T Consensus 31 ~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~ 110 (153)
T KOG0121|consen 31 EALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRI 110 (153)
T ss_pred HHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceee
Confidence 34457899999999999999999999999999999999888899999999999999999999999999999999999877
Q ss_pred CCC
Q 005712 225 APS 227 (681)
Q Consensus 225 ~~~ 227 (681)
.+.
T Consensus 111 D~D 113 (153)
T KOG0121|consen 111 DWD 113 (153)
T ss_pred ecc
Confidence 654
No 72
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.30 E-value=2.2e-11 Score=125.46 Aligned_cols=169 Identities=24% Similarity=0.443 Sum_probs=122.0
Q ss_pred CCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCCC
Q 005712 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED 229 (681)
Q Consensus 150 ~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~~ 229 (681)
.++|||+|||.++|+++|.++|.+||.|..|+|..++.+++++|+|||+|.+.++|..|+..+++..|.|+.|.|.....
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 68999999999999999999999999999999999988999999999999999999999999999999999998877643
Q ss_pred --CCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCCc
Q 005712 230 --NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307 (681)
Q Consensus 230 --~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr 307 (681)
..+.....+ . .+.. .. .
T Consensus 195 ~~~~~~~~~~~-------------------------~----------------------~~~~-----~~---------~ 213 (306)
T COG0724 195 ASQPRSELSNN-------------------------L----------------------DASF-----AK---------K 213 (306)
T ss_pred ccccccccccc-------------------------c----------------------chhh-----hc---------c
Confidence 000000000 0 0000 00 0
Q ss_pred cceecccCCCCCCChhhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q 005712 308 TVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387 (681)
Q Consensus 308 ~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai 387 (681)
. .............+++.+++..++...+...|..+|.+..+.+...........+.++.+.....+..++
T Consensus 214 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (306)
T COG0724 214 L---------SRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESN 284 (306)
T ss_pred c---------cccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhh
Confidence 0 0000111223468899999999999999999999999977777665444344444455555544444444
Q ss_pred H
Q 005712 388 N 388 (681)
Q Consensus 388 ~ 388 (681)
.
T Consensus 285 ~ 285 (306)
T COG0724 285 S 285 (306)
T ss_pred c
Confidence 3
No 73
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.29 E-value=7e-12 Score=125.00 Aligned_cols=76 Identities=21% Similarity=0.390 Sum_probs=70.0
Q ss_pred CCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCCC
Q 005712 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED 229 (681)
Q Consensus 150 ~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~~ 229 (681)
.++|||+|||+.+|+++|+++|+.||+|.+|+|+.+. .++|||||+|.+.++|..||. |++..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~---~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN---ERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC---CCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 5799999999999999999999999999999999884 357999999999999999995 999999999999977653
No 74
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.28 E-value=1.2e-11 Score=123.30 Aligned_cols=78 Identities=15% Similarity=0.261 Sum_probs=70.9
Q ss_pred ceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEec
Q 005712 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (681)
Q Consensus 328 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~ 407 (681)
.++|||+||++.+|+++|+++|+.||.|.+|.|+.+.. .+|||||+|.++++|..|| .|||..|.|+.|.|.....
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 47999999999999999999999999999999998853 5799999999999999999 5999999999999987654
Q ss_pred cC
Q 005712 408 LS 409 (681)
Q Consensus 408 ~~ 409 (681)
..
T Consensus 80 ~~ 81 (260)
T PLN03120 80 YQ 81 (260)
T ss_pred CC
Confidence 43
No 75
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.28 E-value=2.5e-11 Score=115.32 Aligned_cols=160 Identities=19% Similarity=0.262 Sum_probs=117.8
Q ss_pred CCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCCccc
Q 005712 230 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 309 (681)
Q Consensus 230 ~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr~l 309 (681)
-++|||.+||.++...+|..+|..+-- .+.+.|.........++.+|||+|.+..+|.+|++.||+..+-.. .+.+|
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~G--YEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE-~~stL 110 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHG--YEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPE-TGSTL 110 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCC--ccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccc-cCcee
Confidence 589999999999999999999998853 666666544334445678999999999999999999999766332 24555
Q ss_pred eecccCCCCC-------C-------------------------------------------------------------C
Q 005712 310 KVAFAEPLRE-------P-------------------------------------------------------------D 321 (681)
Q Consensus 310 ~v~~a~~~~~-------~-------------------------------------------------------------~ 321 (681)
.+.+++.... . .
T Consensus 111 hiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~ 190 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKA 190 (284)
T ss_pred EeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcC
Confidence 5554421100 0 0
Q ss_pred h-------------hhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 005712 322 P-------------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 388 (681)
Q Consensus 322 ~-------------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~ 388 (681)
+ .....+.+|||.||..+||+++|+.+|+.|--...++|... .....|||+|+..+.|..|+.
T Consensus 191 P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~----~g~~vaf~~~~~~~~at~am~ 266 (284)
T KOG1457|consen 191 PSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR----GGMPVAFADFEEIEQATDAMN 266 (284)
T ss_pred CcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC----CCcceEeecHHHHHHHHHHHH
Confidence 0 00012458999999999999999999999976665655322 234579999999999999998
Q ss_pred HhCCceec
Q 005712 389 AINNKEFS 396 (681)
Q Consensus 389 ~lng~~~~ 396 (681)
.|.|..|.
T Consensus 267 ~lqg~~~s 274 (284)
T KOG1457|consen 267 HLQGNLLS 274 (284)
T ss_pred Hhhcceec
Confidence 88886654
No 76
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=6.1e-12 Score=124.51 Aligned_cols=79 Identities=25% Similarity=0.498 Sum_probs=74.9
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
.+-+||||.-|+++++|.+|+..|+.||+|+.|+|++|+.||+++|||||+|.++.++.+|.+..++.+|.|+.|.|..
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999885543
No 77
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=7.3e-12 Score=108.97 Aligned_cols=79 Identities=16% Similarity=0.303 Sum_probs=75.6
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
.+++|||+||+..+++++|.++|+++|.|..|.+-.|+.+..+-|||||+|.+.++|..|++-+|++.+..+.|.+.|.
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 4689999999999999999999999999999999999888899999999999999999999999999999999999875
No 78
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.26 E-value=6.7e-12 Score=117.87 Aligned_cols=81 Identities=27% Similarity=0.510 Sum_probs=76.1
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
+....+|.|-||.+-||.++|+.+|++||.|.+|.|.+|+.|+.++|||||.|....+|+.||++|++.+|.|+.|.|..
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 44668999999999999999999999999999999999999999999999999999999999999999999999887654
Q ss_pred C
Q 005712 227 S 227 (681)
Q Consensus 227 ~ 227 (681)
+
T Consensus 90 a 90 (256)
T KOG4207|consen 90 A 90 (256)
T ss_pred h
Confidence 4
No 79
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.26 E-value=3.7e-11 Score=114.16 Aligned_cols=146 Identities=20% Similarity=0.233 Sum_probs=110.8
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEee-cCCCCCccceEEEEecchhHHHHHHHhcCCCeeecc---ccCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHK-NFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGK---RCGT 224 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~-d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr---~i~v 224 (681)
.-+||||.+||.++...+|..+|..|---+.+.|.. ++.....+-+|||.|.+...|.+|+.+|||..+.-. .|++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 468999999999999999999999986566666533 333334568999999999999999999998765421 1111
Q ss_pred CCCC----------------------------------------------------------------------------
Q 005712 225 APSE---------------------------------------------------------------------------- 228 (681)
Q Consensus 225 ~~~~---------------------------------------------------------------------------- 228 (681)
..++
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 0000
Q ss_pred ----------------CCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHH
Q 005712 229 ----------------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAY 292 (681)
Q Consensus 229 ----------------~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al 292 (681)
.-.+|||.||..++|+++|+.+|+.|-- ...++|-. ......||++|...+.|..|+
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~g--f~~l~~~~-----~~g~~vaf~~~~~~~~at~am 265 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPG--FHILKIRA-----RGGMPVAFADFEEIEQATDAM 265 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCC--ceEEEEec-----CCCcceEeecHHHHHHHHHHH
Confidence 0148999999999999999999999864 44444422 122467999999999999999
Q ss_pred HHhCCCCee
Q 005712 293 KRLQKPDVV 301 (681)
Q Consensus 293 ~~l~g~~~~ 301 (681)
..|++..+.
T Consensus 266 ~~lqg~~~s 274 (284)
T KOG1457|consen 266 NHLQGNLLS 274 (284)
T ss_pred HHhhcceec
Confidence 999987663
No 80
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=5.6e-12 Score=122.51 Aligned_cols=138 Identities=26% Similarity=0.484 Sum_probs=118.0
Q ss_pred CEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCC--
Q 005712 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE-- 228 (681)
Q Consensus 151 ~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~-- 228 (681)
..|||++||+.+.+.+|..||..||.|..|.+. .||+||+|.+..+|..|+..|++.+|.+..+.+.++.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 469999999999999999999999999999884 3689999999999999999999999998875554333
Q ss_pred ------------------------CCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCC
Q 005712 229 ------------------------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSC 284 (681)
Q Consensus 229 ------------------------~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s 284 (681)
..+.|.|.+++..+.+.+|.++|..+|. ++...+ ..+++||+|.+
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~--~~~~~~---------~~~~~~v~Fs~ 142 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGE--VTYVDA---------RRNFAFVEFSE 142 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCC--Cchhhh---------hccccceeehh
Confidence 2357889999999999999999999997 544433 25689999999
Q ss_pred HHHHHHHHHHhCCCCeeeCCCCcccee
Q 005712 285 HVDAMAAYKRLQKPDVVFGHPERTVKV 311 (681)
Q Consensus 285 ~e~A~~Al~~l~g~~~~~g~~gr~l~v 311 (681)
.++|..|+..|++..+ .++.|.+
T Consensus 143 ~~da~ra~~~l~~~~~----~~~~l~~ 165 (216)
T KOG0106|consen 143 QEDAKRALEKLDGKKL----NGRRISV 165 (216)
T ss_pred hhhhhhcchhccchhh----cCceeee
Confidence 9999999999999988 3666655
No 81
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.25 E-value=1.6e-12 Score=119.66 Aligned_cols=84 Identities=19% Similarity=0.434 Sum_probs=77.9
Q ss_pred ceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEec
Q 005712 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (681)
Q Consensus 328 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~ 407 (681)
+.-|||+|||+.+|+-||.-.|++||.|+.|.|++|..||+|+||||+.|++..+..-|+..|||..|.||.|+|.--..
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~ 114 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSN 114 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeeccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999986555
Q ss_pred cCCC
Q 005712 408 LSNP 411 (681)
Q Consensus 408 ~~~~ 411 (681)
+..|
T Consensus 115 Yk~p 118 (219)
T KOG0126|consen 115 YKKP 118 (219)
T ss_pred ccCC
Confidence 4444
No 82
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=2.3e-11 Score=106.65 Aligned_cols=86 Identities=27% Similarity=0.395 Sum_probs=80.4
Q ss_pred hhhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeE
Q 005712 322 PEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 401 (681)
Q Consensus 322 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~ 401 (681)
|+.......|||.++...+|+++|.+.|..||.|+.|.|-.|..||-.+|||+|+|++.++|++||.+|||..+.|..|.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 44456689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEec
Q 005712 402 VKLRAR 407 (681)
Q Consensus 402 v~~~~~ 407 (681)
|.|...
T Consensus 146 VDw~Fv 151 (170)
T KOG0130|consen 146 VDWCFV 151 (170)
T ss_pred EEEEEe
Confidence 888644
No 83
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.22 E-value=3e-11 Score=118.54 Aligned_cols=77 Identities=18% Similarity=0.237 Sum_probs=70.2
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~ 228 (681)
...+|||+||++.+|+++|++||+.||+|.+|+|+++ +..+++|||+|.+.++|..|| .|++..|.++.|.|.+..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 5689999999999999999999999999999999988 455689999999999999999 599999999999887655
Q ss_pred C
Q 005712 229 D 229 (681)
Q Consensus 229 ~ 229 (681)
.
T Consensus 80 ~ 80 (243)
T PLN03121 80 Q 80 (243)
T ss_pred c
Confidence 3
No 84
>PLN03213 repressor of silencing 3; Provisional
Probab=99.20 E-value=3.6e-11 Score=125.71 Aligned_cols=76 Identities=13% Similarity=0.261 Sum_probs=69.8
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCH--HHHHHHHHHhCCceecCCeeEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTH--EAAVACINAINNKEFSDGNSKVKL 404 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~--~~A~~Ai~~lng~~~~g~~i~v~~ 404 (681)
...+|||+||++.+++++|+..|..||.|..|.|++. +| ||||||+|.+. .++.+||..|||..+.|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 4579999999999999999999999999999999944 66 99999999987 789999999999999999999986
Q ss_pred Ee
Q 005712 405 RA 406 (681)
Q Consensus 405 ~~ 406 (681)
+.
T Consensus 85 AK 86 (759)
T PLN03213 85 AK 86 (759)
T ss_pred cc
Confidence 54
No 85
>PLN03213 repressor of silencing 3; Provisional
Probab=99.20 E-value=3e-11 Score=126.28 Aligned_cols=77 Identities=18% Similarity=0.393 Sum_probs=71.4
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecch--hHHHHHHHhcCCCeeeccccCCCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANK--EHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~--e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
...+|||+||++++|+++|..+|+.||.|..|.|+ +.|| ||||||+|.+. .++.+||..||+..+.|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 45799999999999999999999999999999999 4577 99999999988 789999999999999999999987
Q ss_pred CCC
Q 005712 227 SED 229 (681)
Q Consensus 227 ~~~ 229 (681)
+.+
T Consensus 85 AKP 87 (759)
T PLN03213 85 AKE 87 (759)
T ss_pred ccH
Confidence 764
No 86
>smart00362 RRM_2 RNA recognition motif.
Probab=99.20 E-value=6.7e-11 Score=95.34 Aligned_cols=71 Identities=23% Similarity=0.559 Sum_probs=66.3
Q ss_pred eeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEE
Q 005712 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 402 (681)
Q Consensus 330 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v 402 (681)
+|+|+|||..+++++|+++|.+||.|..+.+..+. +.++|+|||+|.+.++|.+|+..|++..|.|+.+.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999998875 678999999999999999999999999999988765
No 87
>smart00360 RRM RNA recognition motif.
Probab=99.18 E-value=8.2e-11 Score=94.44 Aligned_cols=70 Identities=29% Similarity=0.579 Sum_probs=66.1
Q ss_pred ecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEE
Q 005712 333 LDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 402 (681)
Q Consensus 333 V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v 402 (681)
|+|||..+++++|+++|++||.|..+.+..+..++.++|+|||+|.+.++|.+|+..|++..|.++.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 6799999999999999999999999999998778899999999999999999999999999999988765
No 88
>smart00362 RRM_2 RNA recognition motif.
Probab=99.18 E-value=8e-11 Score=94.90 Aligned_cols=71 Identities=30% Similarity=0.667 Sum_probs=65.9
Q ss_pred EEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCC
Q 005712 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (681)
Q Consensus 152 tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v 224 (681)
+|+|+|||..+++++|+++|++||.|..++++.+. +.++++|||+|.+.++|++|++.+++..+.|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999998775 778999999999999999999999999998887754
No 89
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.18 E-value=1.3e-10 Score=97.56 Aligned_cols=76 Identities=12% Similarity=0.218 Sum_probs=69.6
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
-...|||+|||+.+|.+++-++|.+||.|..|+|-..+.| +|.|||.|++..+|.+|+..|+|..+.++.+.|-+-
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 3578999999999999999999999999999999776554 899999999999999999999999999999887653
No 90
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=3.2e-11 Score=110.83 Aligned_cols=75 Identities=27% Similarity=0.553 Sum_probs=68.2
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~ 228 (681)
-.+.|||+||+..+|+.+|+.+|..||+|..|.|-.+ +-|||||+|.+..+|..|+..|++..|+|..|.|+.+.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 3679999999999999999999999999999999654 57999999999999999999999999999988766543
No 91
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=2.4e-11 Score=115.02 Aligned_cols=81 Identities=22% Similarity=0.476 Sum_probs=77.0
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEe
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (681)
..++|||++|..++++.-|...|-.||.|+.|.++.|..++++||||||+|+-.++|.+||..||+.++.||.|+|.++.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred c
Q 005712 407 R 407 (681)
Q Consensus 407 ~ 407 (681)
.
T Consensus 89 P 89 (298)
T KOG0111|consen 89 P 89 (298)
T ss_pred C
Confidence 3
No 92
>smart00360 RRM RNA recognition motif.
Probab=99.14 E-value=1.4e-10 Score=93.04 Aligned_cols=70 Identities=33% Similarity=0.652 Sum_probs=65.6
Q ss_pred EcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCC
Q 005712 155 IGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (681)
Q Consensus 155 V~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v 224 (681)
|+|||..+++++|+++|++||.|..+.+..++.++.++++|||+|.+.++|.+|++.+++..+.++.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 6899999999999999999999999999998778999999999999999999999999999998887754
No 93
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.14 E-value=1.7e-10 Score=113.31 Aligned_cols=76 Identities=12% Similarity=0.150 Sum_probs=68.9
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEe
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (681)
...+|+|+||++.+|+++|++||+.||.|.+|.|+++. ..++||||+|.++++|..|+ .|||..|.++.|.|.-..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 35799999999999999999999999999999999884 45689999999999999998 899999999998887543
No 94
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=1.1e-10 Score=97.92 Aligned_cols=77 Identities=19% Similarity=0.306 Sum_probs=69.0
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~ 228 (681)
..+.|||+|||+++|.+++.++|.+||.|..|+|= .+...+|.|||.|.+..+|.+|+..|++..+.++.+.|....
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG---~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIG---NTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEec---CccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 56789999999999999999999999999999994 445679999999999999999999999999999887665443
No 95
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.12 E-value=7.5e-11 Score=118.20 Aligned_cols=79 Identities=24% Similarity=0.474 Sum_probs=72.5
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~ 228 (681)
-.++|+|.|||+..-+.||+.+|.+||+|.+|.||.+ ..-||||+||+|.+.++|++|.++||+..+.||+|.|..+.
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 4579999999999999999999999999999999986 23589999999999999999999999999999999987665
Q ss_pred C
Q 005712 229 D 229 (681)
Q Consensus 229 ~ 229 (681)
.
T Consensus 173 a 173 (376)
T KOG0125|consen 173 A 173 (376)
T ss_pred h
Confidence 3
No 96
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.12 E-value=5.4e-11 Score=104.41 Aligned_cols=83 Identities=24% Similarity=0.443 Sum_probs=77.2
Q ss_pred hccCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCC
Q 005712 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (681)
Q Consensus 145 ~~~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v 224 (681)
+...+...|||.++...+||++|.+.|..||+|+.|.|-.|+.||-.+|||.|+|.+.+.|++|+.++|+..|.|..|.|
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~V 146 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSV 146 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeE
Confidence 33447789999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCC
Q 005712 225 APS 227 (681)
Q Consensus 225 ~~~ 227 (681)
.++
T Consensus 147 Dw~ 149 (170)
T KOG0130|consen 147 DWC 149 (170)
T ss_pred EEE
Confidence 654
No 97
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.09 E-value=8.4e-09 Score=105.02 Aligned_cols=164 Identities=14% Similarity=0.225 Sum_probs=122.6
Q ss_pred CCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCCccc
Q 005712 230 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 309 (681)
Q Consensus 230 ~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr~l 309 (681)
+..+.|++|-..+++.+|.+.++.+|+ |..+.++.. +..|.|+|++.+.|..|+.-.....+.++ ++..
T Consensus 31 spvvhvr~l~~~v~eadl~eal~~fG~--i~yvt~~P~-------~r~alvefedi~~akn~Vnfaa~n~i~i~--gq~A 99 (494)
T KOG1456|consen 31 SPVVHVRGLHQGVVEADLVEALSNFGP--IAYVTCMPH-------KRQALVEFEDIEGAKNCVNFAADNQIYIA--GQQA 99 (494)
T ss_pred CceEEEeccccccchhHHHHHHhcCCc--eEEEEeccc-------cceeeeeeccccchhhheehhccCccccc--Cchh
Confidence 457889999999999999999999998 888888765 45799999999999999875444444333 4455
Q ss_pred eecccCCC--CCCChhhcccceeeee--cCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHH
Q 005712 310 KVAFAEPL--REPDPEIMAHVKTVFL--DGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVA 385 (681)
Q Consensus 310 ~v~~a~~~--~~~~~~~~~~~~~l~V--~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~ 385 (681)
-+.++..+ .....+.....+.|.+ -|--+.+|.+-|..++...|.|.+|.|++. ++. -|.|+|++.+.|++
T Consensus 100 l~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~Aqr 174 (494)
T KOG1456|consen 100 LFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQR 174 (494)
T ss_pred hcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHH
Confidence 55555322 2222333333455544 444557999999999999999999999876 232 59999999999999
Q ss_pred HHHHhCCceecCCeeEEEEEeccCCC
Q 005712 386 CINAINNKEFSDGNSKVKLRARLSNP 411 (681)
Q Consensus 386 Ai~~lng~~~~g~~i~v~~~~~~~~~ 411 (681)
|..+|||..|.-..++++ +.+++|
T Consensus 175 Ak~alNGADIYsGCCTLK--IeyAkP 198 (494)
T KOG1456|consen 175 AKAALNGADIYSGCCTLK--IEYAKP 198 (494)
T ss_pred HHhhcccccccccceeEE--EEecCc
Confidence 999999999998774444 344443
No 98
>smart00361 RRM_1 RNA recognition motif.
Probab=99.08 E-value=3.3e-10 Score=92.17 Aligned_cols=61 Identities=18% Similarity=0.323 Sum_probs=54.6
Q ss_pred HHHHHhhhc----ccCcEEEEE-EeecCCC--CCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEE
Q 005712 342 ENQIRDQIK----GYGDVIRIV-LARNMST--AKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 402 (681)
Q Consensus 342 ~~~L~~~F~----~~G~v~~v~-i~~d~~~--g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v 402 (681)
+++|+++|+ +||.|..|. |+.+..+ +.++|||||+|.+.++|.+|+..|||+.|.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 568888888 999999995 6666656 899999999999999999999999999999998876
No 99
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.08 E-value=6.8e-10 Score=89.89 Aligned_cols=73 Identities=29% Similarity=0.592 Sum_probs=67.6
Q ss_pred eeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEE
Q 005712 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (681)
Q Consensus 330 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~ 403 (681)
+|+|+|||..+++++|+++|+.+|.|..+.+..+..+ .++|+|||+|.+.++|..|+..+++..+.++.+.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 4899999999999999999999999999999987654 779999999999999999999999999999988775
No 100
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=2.5e-11 Score=135.25 Aligned_cols=225 Identities=17% Similarity=0.174 Sum_probs=180.0
Q ss_pred CCCEEEEcCCCccCCHH-HHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 149 KEHEIFIGGLDRDATQE-DVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 149 ~~~tVfV~NLp~~~tee-dL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
....+.+.|+.+..... .++..|..+|.|+.|++.........-.++++.+....+++.|+. ..+..+.++.+.|..+
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~a 648 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGLA 648 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCCC
Confidence 44567778888777665 567888899999999997632222333389999999999999996 5667777777776554
Q ss_pred CC----------------CCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHH
Q 005712 228 ED----------------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAA 291 (681)
Q Consensus 228 ~~----------------~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~A 291 (681)
.+ ..++|+.||+..+.+.+|...|..++. +..+++.. ..++++.+|.|||.|...+++.+|
T Consensus 649 d~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~--~e~vqi~~-h~n~~~~rG~~Y~~F~~~~~~~aa 725 (881)
T KOG0128|consen 649 DAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGT--IEVVQIVI-HKNEKRFRGKAYVEFLKPEHAGAA 725 (881)
T ss_pred CchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccch--hhhHHHHH-HhhccccccceeeEeecCCchhhh
Confidence 43 247899999999999999999999997 55555552 246889999999999999999999
Q ss_pred HHHhCCCCeeeCCCCccceecccCCCCCCChhhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcce
Q 005712 292 YKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKD 371 (681)
Q Consensus 292 l~~l~g~~~~~g~~gr~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG 371 (681)
+.-.....+ ....|+|+|+|+..|.+.|+.+|..+|+++.++++..+ .|+++|
T Consensus 726 V~f~d~~~~--------------------------gK~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg 778 (881)
T KOG0128|consen 726 VAFRDSCFF--------------------------GKISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKG 778 (881)
T ss_pred hhhhhhhhh--------------------------hhhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-cccccc
Confidence 875444332 13589999999999999999999999999999987774 689999
Q ss_pred EEEEEeCCHHHHHHHHHHhCCceecCCeeEEEE
Q 005712 372 YGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (681)
Q Consensus 372 ~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (681)
.|+|.|.+..+|.+++..++...++-+.+.|.+
T Consensus 779 ~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~v 811 (881)
T KOG0128|consen 779 KARVDYNTEADASRKVASVDVAGKRENNGEVQV 811 (881)
T ss_pred ceeccCCCcchhhhhcccchhhhhhhcCccccc
Confidence 999999999999999988888777776655544
No 101
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.03 E-value=1.1e-09 Score=117.55 Aligned_cols=77 Identities=18% Similarity=0.328 Sum_probs=65.7
Q ss_pred ceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 328 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
...|||+|||.+++..+|+++|.+||.|+...|......++..+||||+|.+.++++.||.+- -..|+++++.|+.+
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek 364 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEK 364 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEec
Confidence 345999999999999999999999999999988765434455599999999999999999664 67888998888865
No 102
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=4e-10 Score=113.72 Aligned_cols=87 Identities=26% Similarity=0.433 Sum_probs=80.8
Q ss_pred hhhhccCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccc
Q 005712 142 AKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKR 221 (681)
Q Consensus 142 ~~~~~~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~ 221 (681)
.......+.+.|||..|.+-+|.++|.-+|+.||+|++|.|++|..||.+..||||+|.+.+++.+|.-.|++..|..+.
T Consensus 231 pdAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrR 310 (479)
T KOG0415|consen 231 PDADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRR 310 (479)
T ss_pred cccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccce
Confidence 33455668899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 005712 222 CGTAPSE 228 (681)
Q Consensus 222 i~v~~~~ 228 (681)
|.|..++
T Consensus 311 IHVDFSQ 317 (479)
T KOG0415|consen 311 IHVDFSQ 317 (479)
T ss_pred EEeehhh
Confidence 9887654
No 103
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.03 E-value=9.5e-10 Score=89.02 Aligned_cols=73 Identities=34% Similarity=0.684 Sum_probs=66.6
Q ss_pred EEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCC
Q 005712 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (681)
Q Consensus 152 tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~ 225 (681)
+|+|+|||..+++++|+++|+.+|.|..+.+..+..+ .++++|||+|.+.++|..|++.+++..+.++.+.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 5899999999999999999999999999999987554 779999999999999999999999998888877553
No 104
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.02 E-value=8e-10 Score=113.78 Aligned_cols=79 Identities=28% Similarity=0.526 Sum_probs=75.8
Q ss_pred ceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEe
Q 005712 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 328 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (681)
..+|||+|||+.+|+++|+++|.+||.|..|.|..+..++.++|||||+|.+.++|..|+..|++..|.|+.|.|.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 5899999999999999999999999999999999998899999999999999999999999999999999999998754
No 105
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.99 E-value=5.4e-10 Score=120.61 Aligned_cols=79 Identities=23% Similarity=0.540 Sum_probs=76.4
Q ss_pred CEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCCC
Q 005712 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED 229 (681)
Q Consensus 151 ~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~~ 229 (681)
++|||+|||+++++++|..+|+..|.|.+++++.|+.||+++||||++|.+.++|.+|++.||+..+.|++|+|.++..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999877653
No 106
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.99 E-value=6.6e-10 Score=119.93 Aligned_cols=81 Identities=27% Similarity=0.467 Sum_probs=77.5
Q ss_pred eeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEecc
Q 005712 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARL 408 (681)
Q Consensus 329 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~~ 408 (681)
+.|||+|||+++++++|..+|+..|.|..++++.|..||+++||||++|.+.++|..|++.|||.++.|+.|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999987554
Q ss_pred C
Q 005712 409 S 409 (681)
Q Consensus 409 ~ 409 (681)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 107
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=2e-10 Score=108.82 Aligned_cols=82 Identities=18% Similarity=0.538 Sum_probs=78.3
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
...+||||++|..++|+.-|...|-.||.|++|.|+.|-.+++.|||+||+|...|+|.+||..||...|.||.|+|..+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CC
Q 005712 228 ED 229 (681)
Q Consensus 228 ~~ 229 (681)
.+
T Consensus 88 kP 89 (298)
T KOG0111|consen 88 KP 89 (298)
T ss_pred CC
Confidence 65
No 108
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.97 E-value=2.5e-09 Score=82.83 Aligned_cols=56 Identities=21% Similarity=0.492 Sum_probs=50.5
Q ss_pred HHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 345 IRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 345 L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
|.++|++||.|..|.+.... +++|||+|.+.++|..|++.||+..|.|+.|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999997763 689999999999999999999999999999998864
No 109
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.96 E-value=1.2e-09 Score=112.80 Aligned_cols=175 Identities=14% Similarity=0.225 Sum_probs=131.8
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
....++|++++...+.+.++..++...|.+..+.+.....+..++++++|.|...+.+..||.......+.+..+.....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 36789999999999999999999999999988888887788899999999999999999999864433333332211000
Q ss_pred CCCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCCc
Q 005712 228 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307 (681)
Q Consensus 228 ~~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr 307 (681)
..+..+. .+.. .
T Consensus 166 ---------------------------------~~~~~~~---------------------------~n~~--------~ 177 (285)
T KOG4210|consen 166 ---------------------------------TRRGLRP---------------------------KNKL--------S 177 (285)
T ss_pred ---------------------------------ccccccc---------------------------cchh--------c
Confidence 0000000 0000 0
Q ss_pred cceecccCCCCCCChhhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q 005712 308 TVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387 (681)
Q Consensus 308 ~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai 387 (681)
.+. .......++|.+|+..++.++|+.+|..+|.|..++++.+..++..+|||+|.|.+...+..|+
T Consensus 178 ~~~-------------~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~ 244 (285)
T KOG4210|consen 178 RLS-------------SGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLAL 244 (285)
T ss_pred ccc-------------cCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHh
Confidence 000 0011234459999999999999999999999999999999999999999999999999999988
Q ss_pred HHhCCceecCCeeEEEE
Q 005712 388 NAINNKEFSDGNSKVKL 404 (681)
Q Consensus 388 ~~lng~~~~g~~i~v~~ 404 (681)
.. ....+.++.+.+..
T Consensus 245 ~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 245 ND-QTRSIGGRPLRLEE 260 (285)
T ss_pred hc-ccCcccCccccccc
Confidence 76 78888888766653
No 110
>smart00361 RRM_1 RNA recognition motif.
Probab=98.95 E-value=1.8e-09 Score=87.87 Aligned_cols=61 Identities=23% Similarity=0.449 Sum_probs=55.1
Q ss_pred HHHHHHHHh----hcCCeEEEE-EeecCCC--CCccceEEEEecchhHHHHHHHhcCCCeeeccccCC
Q 005712 164 QEDVRKVFE----RIGEVIEVR-LHKNFST--NRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (681)
Q Consensus 164 eedL~~~F~----~~G~V~~v~-i~~d~~t--g~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v 224 (681)
+++|+++|+ +||.|..|. |+.++.+ +.++|+|||+|.+.++|.+|++.||+..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578999998 999999995 7777666 899999999999999999999999999999998754
No 111
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.94 E-value=3.4e-09 Score=115.06 Aligned_cols=158 Identities=22% Similarity=0.383 Sum_probs=126.3
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~ 228 (681)
....|||++||...++..++++...||.+...++++|..+|.++||||.+|.+......|++.||+..+.++.|.|..+.
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 55789999999999999999999999999999999999999999999999999999999999999999998887765432
Q ss_pred CC------------------------------CcceeccccCccc-------------HHHHHHHHhhcCccceEEeeec
Q 005712 229 DN------------------------------DTLFVGNICNTWT-------------KEAIKQKLKDYGVEGVENINLV 265 (681)
Q Consensus 229 ~~------------------------------~~L~VgnLp~~~t-------------e~~L~~~F~~~G~~~v~~i~i~ 265 (681)
.. ..|.+.|+ +| .++++.-+.+||. |..|.+.
T Consensus 368 ~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~---Vt~deLkdd~EyeeIlEdvr~ec~k~g~--v~~v~ip 442 (500)
T KOG0120|consen 368 VGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNV---VTPDELKDDEEYEEILEDVRTECAKFGA--VRSVEIP 442 (500)
T ss_pred ccchhccccCCccccccccchhhhcccCCCcchhhhhhhc---CCHHHhcchHHHHHHHHHHHHHhcccCc--eeEEecC
Confidence 21 11122221 22 2345666778887 8888887
Q ss_pred cc-cc-cCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCCccceecccC
Q 005712 266 SD-IQ-HEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAE 315 (681)
Q Consensus 266 ~d-~~-~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr~l~v~~a~ 315 (681)
++ .. ......|..||+|.+.++++.|+++|+|..+ .++++...+-.
T Consensus 443 r~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF----~nRtVvtsYyd 490 (500)
T KOG0120|consen 443 RPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKF----ANRTVVASYYD 490 (500)
T ss_pred CCCCCCCcCCCcccEEEEecChHHHHHHHHHccCcee----CCcEEEEEecC
Confidence 76 21 2234567899999999999999999999998 57777666544
No 112
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.92 E-value=4.2e-08 Score=107.04 Aligned_cols=141 Identities=20% Similarity=0.170 Sum_probs=107.1
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
..+.+.|-+++.++.+...++++||... .|..+.|..+...+...|-++|+|.....+++|++. +...+..|.+.+.+
T Consensus 308 v~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P 385 (944)
T KOG4307|consen 308 VSDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGP 385 (944)
T ss_pred cchhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecC
Confidence 3467888999999999999999999763 355555655545455588999999999999999975 54555555554432
Q ss_pred CC---------------------------------------------CCCcceeccccCcccHHHHHHHHhhcCccceEE
Q 005712 227 SE---------------------------------------------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVEN 261 (681)
Q Consensus 227 ~~---------------------------------------------~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~ 261 (681)
.. ....|||..||..+++..+.++|...-. |++
T Consensus 386 ~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~--Ved 463 (944)
T KOG4307|consen 386 PGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAA--VED 463 (944)
T ss_pred CCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhh--hhh
Confidence 21 1358999999999999999999998776 776
Q ss_pred -eeeccccccCCCcccEEEEEeCCHHHHHHHHH
Q 005712 262 -INLVSDIQHEGLSRGFAFVMFSCHVDAMAAYK 293 (681)
Q Consensus 262 -i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~ 293 (681)
|.|.+- .+++.++.|||.|...+++..|+.
T Consensus 464 ~I~lt~~--P~~~~~~~afv~F~~~~a~~~a~~ 494 (944)
T KOG4307|consen 464 FIELTRL--PTDLLRPAAFVAFIHPTAPLTASS 494 (944)
T ss_pred eeEeccC--Ccccccchhhheeccccccchhhh
Confidence 555554 477888999999999777766654
No 113
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.90 E-value=5e-09 Score=112.54 Aligned_cols=74 Identities=27% Similarity=0.464 Sum_probs=66.6
Q ss_pred hccCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccC
Q 005712 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (681)
Q Consensus 145 ~~~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~ 223 (681)
.+...+++|+|-|||..+++++|..+|+.||+|..|+.. -..++.+||+|-+..+|++||++|++..+.|+.|+
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 345578999999999999999999999999999997653 35689999999999999999999999999999887
No 114
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.83 E-value=7.4e-09 Score=98.20 Aligned_cols=79 Identities=25% Similarity=0.439 Sum_probs=74.2
Q ss_pred cceeeeecCCCCCCCHHHHHhhhccc-CcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGY-GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~-G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
....++|..+|..+.+..|..+|.+| |.|..+++.+++.||.|+|||||+|++.+.|.-|.+.||+..|.++.|.|.+-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 34689999999999999999999998 88899999999999999999999999999999999999999999999999975
No 115
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.82 E-value=1.4e-09 Score=103.28 Aligned_cols=138 Identities=20% Similarity=0.295 Sum_probs=115.0
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
...+||||.||...++|+-|.++|-+.|+|..|.|..++. +..+ ||||.|.++..+.-|++.+|+..|.+..+.+
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~--- 81 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQR--- 81 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhc---
Confidence 3567999999999999999999999999999999988744 5556 9999999999999999999999999988765
Q ss_pred CCCCcceecc----ccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCC
Q 005712 228 EDNDTLFVGN----ICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKP 298 (681)
Q Consensus 228 ~~~~~L~Vgn----Lp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~ 298 (681)
+++.|+ |...++.+.+...|+..++ +..+++-.+ ..++++.+.|+.+....+.-.++...+..
T Consensus 82 ----~~r~G~shapld~r~~~ei~~~v~s~a~p--~~~~R~~~~--~d~rnrn~~~~~~qr~~~~P~~~~~y~~l 148 (267)
T KOG4454|consen 82 ----TLRCGNSHAPLDERVTEEILYEVFSQAGP--IEGVRIPTD--NDGRNRNFGFVTYQRLCAVPFALDLYQGL 148 (267)
T ss_pred ----ccccCCCcchhhhhcchhhheeeecccCC--CCCcccccc--ccCCccCccchhhhhhhcCcHHhhhhccc
Confidence 455666 6677889999999999998 888888877 46888999999887666655665544443
No 116
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=5.8e-09 Score=105.47 Aligned_cols=85 Identities=16% Similarity=0.320 Sum_probs=80.3
Q ss_pred ccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
.+.+.|||..|.+-+|+++|.-+|+.||.|..|.|++|..||.+--||||+|++.+++++|.-+|++..|.++.|.|.+.
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred eccCC
Q 005712 406 ARLSN 410 (681)
Q Consensus 406 ~~~~~ 410 (681)
...++
T Consensus 317 QSVsk 321 (479)
T KOG0415|consen 317 QSVSK 321 (479)
T ss_pred hhhhh
Confidence 66665
No 117
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.79 E-value=1.1e-08 Score=104.36 Aligned_cols=147 Identities=26% Similarity=0.296 Sum_probs=109.4
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhh---c-CCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeecccc--
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFER---I-GEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRC-- 222 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~---~-G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i-- 222 (681)
+.-.|-+++||+++|+.+|.+||.+ . |-++.|.+++. ..|+..|-|||.|..+++|+.||.. |...|.-|-|
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIEl 237 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIEL 237 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHH
Confidence 3457888999999999999999963 2 24556666664 5689999999999999999999975 2111111111
Q ss_pred -----------------------------------CCCCCCCCCcceeccccCcccHHHHHHHHhhcCcc-ceEEeeecc
Q 005712 223 -----------------------------------GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVE-GVENINLVS 266 (681)
Q Consensus 223 -----------------------------------~v~~~~~~~~L~VgnLp~~~te~~L~~~F~~~G~~-~v~~i~i~~ 266 (681)
.+.......+|.+++||.+++.++|..+|..|-.. ....|.++.
T Consensus 238 FRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~ 317 (508)
T KOG1365|consen 238 FRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVL 317 (508)
T ss_pred HHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEE
Confidence 11222336789999999999999999999988631 122255555
Q ss_pred ccccCCCcccEEEEEeCCHHHHHHHHHHhCCCC
Q 005712 267 DIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD 299 (681)
Q Consensus 267 d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~ 299 (681)
+ ..|+..|-|||+|.+.++|.+|+...+++-
T Consensus 318 N--~qGrPSGeAFIqm~nae~a~aaaqk~hk~~ 348 (508)
T KOG1365|consen 318 N--GQGRPSGEAFIQMRNAERARAAAQKCHKKL 348 (508)
T ss_pred c--CCCCcChhhhhhhhhhHHHHHHHHHHHHhh
Confidence 5 689999999999999999999998766543
No 118
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.75 E-value=1e-08 Score=79.41 Aligned_cols=55 Identities=29% Similarity=0.587 Sum_probs=48.8
Q ss_pred HHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 167 VRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 167 L~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
|.++|++||+|..|.+..+. +++|||+|.+.++|.+|++.||+..+.|++|.|..
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSY 55 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 68999999999999997652 68999999999999999999999999999987754
No 119
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=1.2e-07 Score=101.17 Aligned_cols=157 Identities=17% Similarity=0.274 Sum_probs=112.9
Q ss_pred CCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccc--cCCCccc---EEEEEeCCHHHHHHHHHHhCC--CCeee
Q 005712 230 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQ--HEGLSRG---FAFVMFSCHVDAMAAYKRLQK--PDVVF 302 (681)
Q Consensus 230 ~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~--~tg~skG---~aFV~F~s~e~A~~Al~~l~g--~~~~~ 302 (681)
.++||||+||+.++++.|...|..||. ..|.+..... ..-..+| |+|+.|++...+..-+.+... ..+++
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs---~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf 335 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGS---VKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYF 335 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccc---eEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEE
Confidence 579999999999999999999999995 3333332111 1223456 999999999988877765443 22222
Q ss_pred CCCCccceecccCCC---------CCCChhhcccceeeeecCCCCCCCHHHHHhhhc-ccCcEEEEEEeecCCCCCcceE
Q 005712 303 GHPERTVKVAFAEPL---------REPDPEIMAHVKTVFLDGVPPHWKENQIRDQIK-GYGDVIRIVLARNMSTAKRKDY 372 (681)
Q Consensus 303 g~~gr~l~v~~a~~~---------~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~-~~G~v~~v~i~~d~~~g~~rG~ 372 (681)
.....+++....+.. ...........+||||++||.-++.++|..+|. -||.|..+-|-.|++-+-++|-
T Consensus 336 ~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGa 415 (520)
T KOG0129|consen 336 KVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGA 415 (520)
T ss_pred EEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCc
Confidence 111122211110000 001123345678999999999999999999999 5999999999999888899999
Q ss_pred EEEEeCCHHHHHHHHHH
Q 005712 373 GFIDFSTHEAAVACINA 389 (681)
Q Consensus 373 aFV~F~~~~~A~~Ai~~ 389 (681)
|-|+|.+..+-.+||.+
T Consensus 416 GRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 416 GRVTFSNQQAYIKAISA 432 (520)
T ss_pred ceeeecccHHHHHHHhh
Confidence 99999999999999865
No 120
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.70 E-value=5.7e-08 Score=105.97 Aligned_cols=76 Identities=9% Similarity=0.142 Sum_probs=67.2
Q ss_pred eeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEE
Q 005712 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (681)
Q Consensus 329 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (681)
+.|-+.|+|+.++-+||.+||..|-.+..-.+++-.+.|...|-|.|-|++.++|.+|+..|+++.|..+.|+|.|
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4889999999999999999999997765544555557899999999999999999999999999999999988764
No 121
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.67 E-value=3.3e-08 Score=105.32 Aligned_cols=82 Identities=15% Similarity=0.406 Sum_probs=75.3
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
..-.+.|||.+|+..+--.+|++||++||+|+-++|+++-.+--.+.|+||++.+.++|.+||+.|+.+.|+|+.|.|..
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 34568899999999999999999999999999999999877777899999999999999999999999999999998876
Q ss_pred CC
Q 005712 227 SE 228 (681)
Q Consensus 227 ~~ 228 (681)
+.
T Consensus 482 aK 483 (940)
T KOG4661|consen 482 AK 483 (940)
T ss_pred cc
Confidence 54
No 122
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.66 E-value=1.3e-09 Score=121.70 Aligned_cols=149 Identities=23% Similarity=0.300 Sum_probs=123.7
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~ 228 (681)
...++||+||+..+.+.+|...|..+|.|..|+|....++++.+|+|||.|...+++.+||...... +.|
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~-~~g--------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSC-FFG--------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhh-hhh---------
Confidence 4568999999999999999999999998888777656678999999999999999999999854443 444
Q ss_pred CCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCCcc
Q 005712 229 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 308 (681)
Q Consensus 229 ~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr~ 308 (681)
+..|+|.|.|+..|.++++.++.++|. ++.++++.. ..|+.+|.|||.|.+..++.+++.......+ ....
T Consensus 736 -K~~v~i~g~pf~gt~e~~k~l~~~~gn--~~~~~~vt~--r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~----rE~~ 806 (881)
T KOG0128|consen 736 -KISVAISGPPFQGTKEELKSLASKTGN--VTSLRLVTV--RAGKPKGKARVDYNTEADASRKVASVDVAGK----RENN 806 (881)
T ss_pred -hhhhheeCCCCCCchHHHHhhccccCC--ccccchhhh--hccccccceeccCCCcchhhhhcccchhhhh----hhcC
Confidence 347999999999999999999999998 888887765 5889999999999999999999876665544 2344
Q ss_pred ceecccCC
Q 005712 309 VKVAFAEP 316 (681)
Q Consensus 309 l~v~~a~~ 316 (681)
+.++.+.|
T Consensus 807 ~~v~vsnp 814 (881)
T KOG0128|consen 807 GEVQVSNP 814 (881)
T ss_pred ccccccCC
Confidence 44544433
No 123
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.65 E-value=2e-08 Score=111.09 Aligned_cols=112 Identities=22% Similarity=0.350 Sum_probs=90.1
Q ss_pred HHhhHHhhhhccCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCC
Q 005712 136 RELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNP 215 (681)
Q Consensus 136 ~~~~~~~~~~~~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~ 215 (681)
+-+..+.......-++||||+.|+..++|.+|..+|+.||+|.+|.++. +++||||+.....+|.+||.+|++.
T Consensus 407 kglP~I~pd~isV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~ 480 (894)
T KOG0132|consen 407 KGLPTIPPDHISVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNV 480 (894)
T ss_pred ccCCCCCCcceeEeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcc
Confidence 3344445555566789999999999999999999999999999999974 5899999999999999999999999
Q ss_pred eeeccccCCCCCCCC-----------CcceeccccCcccHHHHHHHHhh
Q 005712 216 VICGKRCGTAPSEDN-----------DTLFVGNICNTWTKEAIKQKLKD 253 (681)
Q Consensus 216 ~l~Gr~i~v~~~~~~-----------~~L~VgnLp~~~te~~L~~~F~~ 253 (681)
.+..+.|+|.|+... ..|=|.-||+..-..+|+.+++.
T Consensus 481 kv~~k~Iki~Wa~g~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~eg 529 (894)
T KOG0132|consen 481 KVADKTIKIAWAVGKGPKSEYKDYWDVELGVTYIPWEKLTDDLEAWCEG 529 (894)
T ss_pred cccceeeEEeeeccCCcchhhhhhhhcccCeeEeehHhcCHHHHHhhhh
Confidence 999999999887542 23345667776555556666553
No 124
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=2.8e-07 Score=98.48 Aligned_cols=143 Identities=22% Similarity=0.351 Sum_probs=108.9
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeec---CCCCCccc---eEEEEecchhHHHHHHHhcCC----Ce
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKN---FSTNRNKG---YAFVKFANKEHAKRALTEMKN----PV 216 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d---~~tg~skG---~aFVeF~~~e~A~~Al~~l~g----~~ 216 (681)
..-++.|||++||++++|+.|...|..||.|. |..... ..--.++| |+|+.|.++.+++..|.++.- ..
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~y 334 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYY 334 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceE
Confidence 34568999999999999999999999999763 333211 11123566 999999999999888876421 11
Q ss_pred e-------eccccCC---------------CCCCCCCcceeccccCcccHHHHHHHHh-hcCccceEEeeeccccccCCC
Q 005712 217 I-------CGKRCGT---------------APSEDNDTLFVGNICNTWTKEAIKQKLK-DYGVEGVENINLVSDIQHEGL 273 (681)
Q Consensus 217 l-------~Gr~i~v---------------~~~~~~~~L~VgnLp~~~te~~L~~~F~-~~G~~~v~~i~i~~d~~~tg~ 273 (681)
| ..+.+.| .+..+.+|||||+||..++.++|..+|+ -||. |..+-|-.|+ .-..
T Consensus 335 f~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGg--V~yaGIDtD~-k~KY 411 (520)
T KOG0129|consen 335 FKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGG--VLYVGIDTDP-KLKY 411 (520)
T ss_pred EEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCc--eEEEEeccCc-ccCC
Confidence 1 1121222 1223468999999999999999999999 7886 8888887774 5678
Q ss_pred cccEEEEEeCCHHHHHHHHH
Q 005712 274 SRGFAFVMFSCHVDAMAAYK 293 (681)
Q Consensus 274 skG~aFV~F~s~e~A~~Al~ 293 (681)
.+|-+=|+|.+..+-.+||.
T Consensus 412 PkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 412 PKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred CCCcceeeecccHHHHHHHh
Confidence 89999999999999999986
No 125
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.61 E-value=5.5e-08 Score=92.34 Aligned_cols=76 Identities=28% Similarity=0.429 Sum_probs=70.3
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhc-CCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERI-GEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~-G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v 224 (681)
....++|.-||.-+-+.+|..+|.+| |.|..+++.+++.||.|+|||||+|.+++.|.-|-+.||+..|.++.|.+
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 55689999999999999999999998 78999999999999999999999999999999999999999999986543
No 126
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.54 E-value=5.6e-08 Score=100.83 Aligned_cols=81 Identities=23% Similarity=0.434 Sum_probs=70.5
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEe
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (681)
..++|||++|+|.++++.|++.|.+||.|..|.|++|+.+++++||+||+|++++...++|.. ..+.|.|+.|.+.-++
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 458999999999999999999999999999999999999999999999999999988888743 4457888887666554
Q ss_pred cc
Q 005712 407 RL 408 (681)
Q Consensus 407 ~~ 408 (681)
..
T Consensus 84 ~r 85 (311)
T KOG4205|consen 84 SR 85 (311)
T ss_pred Cc
Confidence 44
No 127
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.48 E-value=2.1e-07 Score=103.27 Aligned_cols=76 Identities=17% Similarity=0.412 Sum_probs=70.5
Q ss_pred ccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
.-++||||++|+..+++.+|+.+|+.||.|..|.++. ++|+|||++....+|.+|+.+|++..+.++.|+|.|+
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 4478999999999999999999999999999999865 4899999999999999999999999999999999987
Q ss_pred ec
Q 005712 406 AR 407 (681)
Q Consensus 406 ~~ 407 (681)
+.
T Consensus 493 ~g 494 (894)
T KOG0132|consen 493 VG 494 (894)
T ss_pred cc
Confidence 64
No 128
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.48 E-value=2.6e-07 Score=89.36 Aligned_cols=80 Identities=19% Similarity=0.363 Sum_probs=71.7
Q ss_pred ceeeeecCCCCCCCHHHHHh----hhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEE
Q 005712 328 VKTVFLDGVPPHWKENQIRD----QIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (681)
Q Consensus 328 ~~~l~V~nLp~~~t~~~L~~----~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~ 403 (681)
..+|||.||...+..++|+. +|++||.|..|.... +.+.||-|||.|.+.+.|..|+.+|+|..|.|+.++|.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 34999999999999999998 999999999998764 46889999999999999999999999999999999998
Q ss_pred EEeccCC
Q 005712 404 LRARLSN 410 (681)
Q Consensus 404 ~~~~~~~ 410 (681)
++...+.
T Consensus 86 yA~s~sd 92 (221)
T KOG4206|consen 86 YAKSDSD 92 (221)
T ss_pred cccCccc
Confidence 8765443
No 129
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.48 E-value=1.1e-07 Score=107.10 Aligned_cols=169 Identities=22% Similarity=0.386 Sum_probs=137.8
Q ss_pred hhHHhhhhccCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCee
Q 005712 138 LNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI 217 (681)
Q Consensus 138 ~~~~~~~~~~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l 217 (681)
.....+......+.|||++||..++++.+|+..|..+|.|..|.|-+- .-++-.-|+||.|.+..++-+|+..+.+..|
T Consensus 360 ~t~v~~~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP-~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I 438 (975)
T KOG0112|consen 360 LTHVLKLDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTP-HIKTESAYAFVSLLNTDMTPSAKFEESGPLI 438 (975)
T ss_pred ccccccccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccC-CCCcccchhhhhhhccccCcccchhhcCCcc
Confidence 333444555568899999999999999999999999999999999553 2355567999999999999999999888777
Q ss_pred eccccCCC----CCCCCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHH
Q 005712 218 CGKRCGTA----PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYK 293 (681)
Q Consensus 218 ~Gr~i~v~----~~~~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~ 293 (681)
..-.+++. .+...+.+++++|..-+....|...|..||+ |..|.+-.. --|+||.|.+...|.+|+.
T Consensus 439 ~~g~~r~glG~~kst~ttr~~sgglg~w~p~~~l~r~fd~fGp--ir~Idy~hg-------q~yayi~yes~~~aq~a~~ 509 (975)
T KOG0112|consen 439 GNGTHRIGLGQPKSTPTTRLQSGGLGPWSPVSRLNREFDRFGP--IRIIDYRHG-------QPYAYIQYESPPAAQAATH 509 (975)
T ss_pred ccCcccccccccccccceeeccCCCCCCChHHHHHHHhhccCc--ceeeecccC-------CcceeeecccCccchhhHH
Confidence 65444443 4456789999999999999999999999998 777666433 3589999999999999999
Q ss_pred HhCCCCeeeCCCCccceecccCCCC
Q 005712 294 RLQKPDVVFGHPERTVKVAFAEPLR 318 (681)
Q Consensus 294 ~l~g~~~~~g~~gr~l~v~~a~~~~ 318 (681)
.|.+..+ |...+.++|.++...-
T Consensus 510 ~~rgap~--G~P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 510 DMRGAPL--GGPPRRLRVDLASPPG 532 (975)
T ss_pred HHhcCcC--CCCCcccccccccCCC
Confidence 9988765 5567889999986543
No 130
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.48 E-value=2e-07 Score=99.53 Aligned_cols=80 Identities=19% Similarity=0.410 Sum_probs=74.5
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEe
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (681)
..+.|+|.+|...+...+|+.+|++||.|+-++|+.+..+-.-++|+||++.+.++|.+||..|+-+++.|+.|.|+-++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 46789999999999999999999999999999999998787889999999999999999999999999999999888644
No 131
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.47 E-value=4.8e-06 Score=85.75 Aligned_cols=83 Identities=25% Similarity=0.299 Sum_probs=74.7
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcE--------EEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCC
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDV--------IRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 398 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v--------~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~ 398 (681)
...+|||-+||..++.++|.++|.++|.| ..|.|.+++.|++++|-|.|.|++...|++||..++++.|.+.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 35689999999999999999999999988 3578889999999999999999999999999999999999998
Q ss_pred eeEEEEEeccC
Q 005712 399 NSKVKLRARLS 409 (681)
Q Consensus 399 ~i~v~~~~~~~ 409 (681)
.|+|.++...+
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 88877665444
No 132
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.44 E-value=1.7e-07 Score=91.38 Aligned_cols=165 Identities=19% Similarity=0.235 Sum_probs=114.2
Q ss_pred CcceeccccCcccHHH-H--HHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCCc
Q 005712 231 DTLFVGNICNTWTKEA-I--KQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307 (681)
Q Consensus 231 ~~L~VgnLp~~~te~~-L--~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr 307 (681)
-.++++++-..+..+- | ...|..+-. +....++++ ..+.-++++|+.|.......++-..-++..+ ..+
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~--L~ktk~v~~--~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki----~~~ 168 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPS--LVKTKLVRD--RPQPIRPEAFESFKASDALLKAETEKEKKKI----GKP 168 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchh--hhhhhhhhc--CCCccCcccccCcchhhhhhhhccccccccc----cCc
Confidence 3445555544444433 2 455555444 555566665 3556678999998876666665544444433 122
Q ss_pred cceecccCCCCC-CChhhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHH
Q 005712 308 TVKVAFAEPLRE-PDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386 (681)
Q Consensus 308 ~l~v~~a~~~~~-~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~A 386 (681)
.+++.-.+.-.. ...+-.....+||-+-|..+++++-|...|.+|-.....+++++..|++++||+||.|.++.++..|
T Consensus 169 ~VR~a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rA 248 (290)
T KOG0226|consen 169 PVRLAAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRA 248 (290)
T ss_pred ceeeccccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHH
Confidence 233322221111 1112233456899999999999999999999999888999999999999999999999999999999
Q ss_pred HHHhCCceecCCeeEEE
Q 005712 387 INAINNKEFSDGNSKVK 403 (681)
Q Consensus 387 i~~lng~~~~g~~i~v~ 403 (681)
++.|||+.++.+.|++.
T Consensus 249 mrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 249 MREMNGKYVGSRPIKLR 265 (290)
T ss_pred HHhhcccccccchhHhh
Confidence 99999999999986654
No 133
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.43 E-value=1.7e-07 Score=105.52 Aligned_cols=158 Identities=18% Similarity=0.283 Sum_probs=127.3
Q ss_pred CCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCCcc
Q 005712 229 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 308 (681)
Q Consensus 229 ~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr~ 308 (681)
.+++||++||...+++.+|+..|..+|. |..|.|.... -++-.-|+||.|.+...+-.|...+.+..|.- -.
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gk--ve~VDiKtP~--~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~----g~ 442 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGK--VEEVDIKTPH--IKTESAYAFVSLLNTDMTPSAKFEESGPLIGN----GT 442 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhcc--ccccccccCC--CCcccchhhhhhhccccCcccchhhcCCcccc----Cc
Confidence 3689999999999999999999999998 8888887653 44556789999999999999988888877642 23
Q ss_pred ceecccCCCCCCChhhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 005712 309 VKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 388 (681)
Q Consensus 309 l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~ 388 (681)
+++.+.++ .....+.|+|++|+.++....|...|..||.|..|.+-.. .-||+|.|++...|++|+.
T Consensus 443 ~r~glG~~-------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~ 509 (975)
T KOG0112|consen 443 HRIGLGQP-------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATH 509 (975)
T ss_pred cccccccc-------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHH
Confidence 33333333 1223579999999999999999999999999999887332 3489999999999999999
Q ss_pred HhCCceecC--CeeEEEEEec
Q 005712 389 AINNKEFSD--GNSKVKLRAR 407 (681)
Q Consensus 389 ~lng~~~~g--~~i~v~~~~~ 407 (681)
.|.|..|++ +.+.|.++..
T Consensus 510 ~~rgap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 510 DMRGAPLGGPPRRLRVDLASP 530 (975)
T ss_pred HHhcCcCCCCCcccccccccC
Confidence 999999998 4455555443
No 134
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.37 E-value=7.8e-07 Score=90.57 Aligned_cols=74 Identities=27% Similarity=0.431 Sum_probs=65.6
Q ss_pred ccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH-hCCceecCCeeEEEE
Q 005712 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA-INNKEFSDGNSKVKL 404 (681)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~-lng~~~~g~~i~v~~ 404 (681)
...++|||++|-..+++.+|+++|-+||.|..|.++.. +++|||+|.+.++|+.|..+ +|...|+|.+|+|.|
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 45689999999999999999999999999999999765 56999999999999988754 577789999999887
Q ss_pred E
Q 005712 405 R 405 (681)
Q Consensus 405 ~ 405 (681)
.
T Consensus 300 g 300 (377)
T KOG0153|consen 300 G 300 (377)
T ss_pred C
Confidence 5
No 135
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.36 E-value=5.4e-07 Score=91.73 Aligned_cols=79 Identities=29% Similarity=0.479 Sum_probs=67.7
Q ss_pred hccCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhc-CCCeeeccccC
Q 005712 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM-KNPVICGKRCG 223 (681)
Q Consensus 145 ~~~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l-~g~~l~Gr~i~ 223 (681)
-+.....+|||++|-..+++.+|+++|-+||+|.+|+++.. +++|||+|.+.++|++|.+++ +..+|.|.+|.
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~ 296 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLK 296 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEE
Confidence 34446789999999999999999999999999999999754 569999999999999988774 66678899888
Q ss_pred CCCCCC
Q 005712 224 TAPSED 229 (681)
Q Consensus 224 v~~~~~ 229 (681)
|.|...
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 876654
No 136
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.35 E-value=4e-06 Score=83.83 Aligned_cols=81 Identities=11% Similarity=0.245 Sum_probs=74.2
Q ss_pred ceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEec
Q 005712 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (681)
Q Consensus 328 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~ 407 (681)
..+|.|.||+..++++||+++|..||.++.+.|.++ ..|.+.|.|-|.|...++|.+|++.+|+..+.|+.+++.+...
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 478999999999999999999999999999999888 4789999999999999999999999999999999998887654
Q ss_pred cC
Q 005712 408 LS 409 (681)
Q Consensus 408 ~~ 409 (681)
..
T Consensus 162 ~~ 163 (243)
T KOG0533|consen 162 PS 163 (243)
T ss_pred cc
Confidence 43
No 137
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.35 E-value=2.8e-07 Score=87.98 Aligned_cols=139 Identities=15% Similarity=0.245 Sum_probs=112.8
Q ss_pred CCCCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCC
Q 005712 227 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 306 (681)
Q Consensus 227 ~~~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~g 306 (681)
+...++|||+|+...++++.|.++|-+.|+ |..+.|... ..+..+ ||||.|.+.....-|+..+|+..+. +
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGP--V~kv~ip~~--~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~----~ 76 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGP--VYKVGIPSG--QDQEQK-FAYVFFPNENSVQLAGQLENGDDLE----E 76 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCc--eEEEeCCCC--ccCCCc-eeeeecccccchhhhhhhcccchhc----c
Confidence 445689999999999999999999999998 988888776 344445 9999999999999999999998873 5
Q ss_pred ccceecccCCCCCCChhhcccceeeeecC----CCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHH
Q 005712 307 RTVKVAFAEPLREPDPEIMAHVKTVFLDG----VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEA 382 (681)
Q Consensus 307 r~l~v~~a~~~~~~~~~~~~~~~~l~V~n----Lp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~ 382 (681)
+.++++ ++-++ |...++++.+...|+.-|.|..+++.++.. ++++-++||.+...-+
T Consensus 77 ~e~q~~------------------~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~ 137 (267)
T KOG4454|consen 77 DEEQRT------------------LRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCA 137 (267)
T ss_pred chhhcc------------------cccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhc
Confidence 555443 33344 566788999999999999999999998864 7888999999877766
Q ss_pred HHHHHHHhCCc
Q 005712 383 AVACINAINNK 393 (681)
Q Consensus 383 A~~Ai~~lng~ 393 (681)
.-.|+....+.
T Consensus 138 ~P~~~~~y~~l 148 (267)
T KOG4454|consen 138 VPFALDLYQGL 148 (267)
T ss_pred CcHHhhhhccc
Confidence 66666555543
No 138
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.32 E-value=4.5e-07 Score=88.53 Aligned_cols=158 Identities=20% Similarity=0.311 Sum_probs=124.1
Q ss_pred CCEEEEcCCCccCCHHH-H--HHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCC--
Q 005712 150 EHEIFIGGLDRDATQED-V--RKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT-- 224 (681)
Q Consensus 150 ~~tVfV~NLp~~~teed-L--~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v-- 224 (681)
-...|+.|+-.++..+- | ...|+.+-.+...+++++ ..+..++++|+.|.....-.++-..-+++.+.-..|+.
T Consensus 96 vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~-~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~ 174 (290)
T KOG0226|consen 96 VFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRD-RPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAA 174 (290)
T ss_pred cccccccccccccCCCCCCcchhhhccchhhhhhhhhhc-CCCccCcccccCcchhhhhhhhccccccccccCcceeecc
Confidence 34567777777666555 3 566777666666777776 34678899999999888888887766666665554443
Q ss_pred ----------CCCCCCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHH
Q 005712 225 ----------APSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKR 294 (681)
Q Consensus 225 ----------~~~~~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~ 294 (681)
.+.....+||++.|..+++.+-|...|.+|-. ....+++++ ..+++++||+||.|.+.+++..|++.
T Consensus 175 gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfps--f~~akviRd-kRTgKSkgygfVSf~~pad~~rAmre 251 (290)
T KOG0226|consen 175 GTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPS--FQKAKVIRD-KRTGKSKGYGFVSFRDPADYVRAMRE 251 (290)
T ss_pred ccccCCcccccCccccceeecccccccccHHHHHHHHHhccc--hhhcccccc-ccccccccceeeeecCHHHHHHHHHh
Confidence 33445689999999999999999999999987 788889998 48999999999999999999999999
Q ss_pred hCCCCeeeCCCCccceecccC
Q 005712 295 LQKPDVVFGHPERTVKVAFAE 315 (681)
Q Consensus 295 l~g~~~~~g~~gr~l~v~~a~ 315 (681)
|++.-+ ..+.|++..+.
T Consensus 252 m~gkyV----gsrpiklRkS~ 268 (290)
T KOG0226|consen 252 MNGKYV----GSRPIKLRKSE 268 (290)
T ss_pred hccccc----ccchhHhhhhh
Confidence 999887 56777665443
No 139
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.28 E-value=1.4e-06 Score=86.93 Aligned_cols=79 Identities=20% Similarity=0.376 Sum_probs=72.1
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
....+|.|.|||+.++++||+++|..||.++.+-|..+ .+|++.|+|-|.|...++|.+|++.+++..|.|+.|.+...
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 35578999999999999999999999999999999888 57999999999999999999999999999999998876543
No 140
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.27 E-value=4.7e-07 Score=93.12 Aligned_cols=208 Identities=14% Similarity=0.157 Sum_probs=125.8
Q ss_pred CCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCC---CCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFS---TNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 150 ~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~---tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
...|.|.||.+.+|.+++..||...|+|.+++|+.+.. -.....+|||.|.+...+..|-. |.++++.++.|.|.+
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEe
Confidence 34899999999999999999999999999999976322 12356689999999999988885 777777777654433
Q ss_pred CCCCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCC
Q 005712 227 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 306 (681)
Q Consensus 227 ~~~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~g 306 (681)
.. ..+..+.. +|..++...+..-.+..+ | |-|.+.. +. ..++..
T Consensus 86 ~~-----------~~~~p~r~--af~~l~~~navprll~pd----g-------~Lp~~~~-----lt-------~~nh~p 129 (479)
T KOG4676|consen 86 YG-----------DEVIPDRF--AFVELADQNAVPRLLPPD----G-------VLPGDRP-----LT-------KINHSP 129 (479)
T ss_pred cC-----------CCCCccHH--HHHhcCcccccccccCCC----C-------ccCCCCc-----cc-------cccCCc
Confidence 32 11222221 444433211111111111 0 0000000 00 001001
Q ss_pred ccceecccCCCCCCChhhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHH
Q 005712 307 RTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386 (681)
Q Consensus 307 r~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~A 386 (681)
..|-.....+..........-..+|+|.+|+..+...++-+.|..+|.|....+... ...-+|-|+|....+...|
T Consensus 130 ~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask----~~s~~c~~sf~~qts~~ha 205 (479)
T KOG4676|consen 130 NAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASK----SRSSSCSHSFRKQTSSKHA 205 (479)
T ss_pred cceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhcc----CCCcchhhhHhhhhhHHHH
Confidence 111111111111111111222468999999999999999999999999988877433 3345677999988888888
Q ss_pred HHHhCCceecCCe
Q 005712 387 INAINNKEFSDGN 399 (681)
Q Consensus 387 i~~lng~~~~g~~ 399 (681)
+ .++|.++.-..
T Consensus 206 l-r~~gre~k~qh 217 (479)
T KOG4676|consen 206 L-RSHGRERKRQH 217 (479)
T ss_pred H-Hhcchhhhhhh
Confidence 7 56777776443
No 141
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.27 E-value=3e-06 Score=84.92 Aligned_cols=81 Identities=15% Similarity=0.288 Sum_probs=75.3
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEe
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (681)
..+.++|+|+...+|.++|...|+.||.|..|.|+.++..+.++||+||+|.+.+.+..|+. ||+..|.++.+.|++..
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKR 178 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeee
Confidence 45799999999999999999999999999999999999999999999999999999999997 99999999999998764
Q ss_pred cc
Q 005712 407 RL 408 (681)
Q Consensus 407 ~~ 408 (681)
..
T Consensus 179 ~~ 180 (231)
T KOG4209|consen 179 TN 180 (231)
T ss_pred ee
Confidence 43
No 142
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.17 E-value=1.8e-06 Score=86.58 Aligned_cols=82 Identities=22% Similarity=0.329 Sum_probs=74.9
Q ss_pred hccCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCC
Q 005712 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (681)
Q Consensus 145 ~~~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v 224 (681)
+.......|||+|+.+.+|.++|..+|+.||.|..|.|.+|+.++.++|||||+|.+.+.+..||. |++..|.++.+.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 444577899999999999999999999999999999999999999999999999999999999998 9999999998876
Q ss_pred CCC
Q 005712 225 APS 227 (681)
Q Consensus 225 ~~~ 227 (681)
...
T Consensus 175 t~~ 177 (231)
T KOG4209|consen 175 TLK 177 (231)
T ss_pred eee
Confidence 543
No 143
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.17 E-value=7.5e-06 Score=70.25 Aligned_cols=68 Identities=24% Similarity=0.318 Sum_probs=61.6
Q ss_pred CEEEEcCCCccCCHHHHHHHHhh--cCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeee
Q 005712 151 HEIFIGGLDRDATQEDVRKVFER--IGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVIC 218 (681)
Q Consensus 151 ~tVfV~NLp~~~teedL~~~F~~--~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~ 218 (681)
+||.|+|||...|.++|.+++.. .|...-+-++.|..++.+.|||||.|.+.+.|.+..+.++|..+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~ 71 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP 71 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence 69999999999999999998876 467788889999999999999999999999999999998887653
No 144
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.16 E-value=9.6e-06 Score=69.59 Aligned_cols=69 Identities=19% Similarity=0.401 Sum_probs=63.2
Q ss_pred eeeeecCCCCCCCHHHHHhhhccc--CcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC
Q 005712 329 KTVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397 (681)
Q Consensus 329 ~~l~V~nLp~~~t~~~L~~~F~~~--G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g 397 (681)
++|.|+|||...|.++|.+++... |....+.++.|..++.+.|||||.|.+++.|.+-.+.++|+.+..
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~ 72 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPN 72 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCcccc
Confidence 689999999999999999988753 788889999999999999999999999999999999999998863
No 145
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.14 E-value=2.7e-06 Score=91.69 Aligned_cols=73 Identities=25% Similarity=0.428 Sum_probs=59.1
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeecccc
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRC 222 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i 222 (681)
...+|||+|||++++..+|+++|++||.|+...|..-...+++..||||+|.+.++++.||.+ +-..|.+++|
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl 359 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKL 359 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeE
Confidence 456799999999999999999999999999999866432344449999999999999999986 3444444443
No 146
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.13 E-value=4.6e-07 Score=93.89 Aligned_cols=153 Identities=18% Similarity=0.262 Sum_probs=120.2
Q ss_pred CcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCCccce
Q 005712 231 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 310 (681)
Q Consensus 231 ~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr~l~ 310 (681)
++||++||.+.++..+|..+|...-. ....-.++. .||+||...+...|.+|+..+++..-+ .++.+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~-~~~g~fl~k--------~gyafvd~pdq~wa~kaie~~sgk~el---qGkr~e 69 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKI-PGSGQFLVK--------SGYAFVDCPDQQWANKAIETLSGKVEL---QGKRQE 69 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccC-CCCcceeee--------cceeeccCCchhhhhhhHHhhchhhhh---cCceee
Confidence 47899999999999999999987643 122222222 479999999999999999999987655 567777
Q ss_pred ecccCCCCCCChhhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEee-cCCCCCcceEEEEEeCCHHHHHHHHHH
Q 005712 311 VAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLAR-NMSTAKRKDYGFIDFSTHEAAVACINA 389 (681)
Q Consensus 311 v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~-d~~~g~~rG~aFV~F~~~~~A~~Ai~~ 389 (681)
+..+.+++.. ++++.|+|+|....|+.|..+..+||.|..|..+. +..+ -..-|+|.+.+.+..||..
T Consensus 70 ~~~sv~kkqr-------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~k 138 (584)
T KOG2193|consen 70 VEHSVPKKQR-------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHK 138 (584)
T ss_pred ccchhhHHHH-------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHh
Confidence 7776665432 46799999999999999999999999999887642 2222 1234788999999999999
Q ss_pred hCCceecCCeeEEEEEe
Q 005712 390 INNKEFSDGNSKVKLRA 406 (681)
Q Consensus 390 lng~~~~g~~i~v~~~~ 406 (681)
|||..+....+++.+-.
T Consensus 139 l~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 139 LNGPQLENQHLKVGYIP 155 (584)
T ss_pred hcchHhhhhhhhcccCc
Confidence 99999999887776643
No 147
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.13 E-value=6.3e-05 Score=76.54 Aligned_cols=76 Identities=9% Similarity=0.184 Sum_probs=66.4
Q ss_pred ceeeeecCCCCCCCHHHHHhhhcccC--cEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEE
Q 005712 328 VKTVFLDGVPPHWKENQIRDQIKGYG--DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (681)
Q Consensus 328 ~~~l~V~nLp~~~t~~~L~~~F~~~G--~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~ 403 (681)
.-++||+||-|++|++||.+.....| .+..+++..+..+|.++|||+|...+..+.++.++.|-.++|.|..-.|.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 35899999999999999999988776 46677888888899999999999999999999999999999999765543
No 148
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.94 E-value=9.3e-06 Score=79.69 Aligned_cols=74 Identities=24% Similarity=0.327 Sum_probs=63.1
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCC--------CCccc----eEEEEecchhHHHHHHHhcCCCe
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFST--------NRNKG----YAFVKFANKEHAKRALTEMKNPV 216 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~t--------g~skG----~aFVeF~~~e~A~~Al~~l~g~~ 216 (681)
....||+++||+.+....|+++|++||.|-.|-|.....+ |.+.. -++|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 6789999999999999999999999999999988655443 22222 37899999999999999999999
Q ss_pred eecccc
Q 005712 217 ICGKRC 222 (681)
Q Consensus 217 l~Gr~i 222 (681)
|.|++-
T Consensus 153 Iggkk~ 158 (278)
T KOG3152|consen 153 IGGKKK 158 (278)
T ss_pred cCCCCC
Confidence 999863
No 149
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.88 E-value=2.7e-05 Score=79.51 Aligned_cols=77 Identities=16% Similarity=0.307 Sum_probs=70.1
Q ss_pred ceeeeecCCCCCCCHHHHHhhhcccCcEE--------EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCe
Q 005712 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVI--------RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN 399 (681)
Q Consensus 328 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~--------~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~ 399 (681)
.+.|||.|||.++|.+++.++|++||.|. .|+|.++. .|+.+|-|.+.|--.+++.-||..|++..|.|+.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 45799999999999999999999999884 47888885 5999999999999999999999999999999999
Q ss_pred eEEEEE
Q 005712 400 SKVKLR 405 (681)
Q Consensus 400 i~v~~~ 405 (681)
|+|+.+
T Consensus 213 ~rVerA 218 (382)
T KOG1548|consen 213 LRVERA 218 (382)
T ss_pred EEEehh
Confidence 888865
No 150
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.84 E-value=2.6e-05 Score=86.17 Aligned_cols=79 Identities=20% Similarity=0.397 Sum_probs=69.9
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecC---CCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNF---STNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~---~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~ 225 (681)
..+.|||+||++.++++.|...|..||+|.+|+|+.-+ ...+.+-|+||.|-+..+|++|++.|++..+....+++.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 45789999999999999999999999999999997532 234567899999999999999999999999999888877
Q ss_pred CC
Q 005712 226 PS 227 (681)
Q Consensus 226 ~~ 227 (681)
+.
T Consensus 253 Wg 254 (877)
T KOG0151|consen 253 WG 254 (877)
T ss_pred cc
Confidence 66
No 151
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.82 E-value=2.9e-05 Score=68.21 Aligned_cols=70 Identities=16% Similarity=0.353 Sum_probs=45.1
Q ss_pred eeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc-----eecCCeeEEE
Q 005712 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK-----EFSDGNSKVK 403 (681)
Q Consensus 329 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~-----~~~g~~i~v~ 403 (681)
+.|.|.+++..++.++|++.|++||.|.+|.+..... .|+|.|.++++|++|+.++.-. .|.+..++++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 4688999999999999999999999999999976532 5999999999999999877443 5666666555
Q ss_pred E
Q 005712 404 L 404 (681)
Q Consensus 404 ~ 404 (681)
+
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 4
No 152
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=97.81 E-value=0.00011 Score=83.48 Aligned_cols=14 Identities=50% Similarity=0.517 Sum_probs=6.3
Q ss_pred CCcccEEEEEeCCH
Q 005712 272 GLSRGFAFVMFSCH 285 (681)
Q Consensus 272 g~skG~aFV~F~s~ 285 (681)
++.++|+--.|+++
T Consensus 899 g~q~~~~g~kfsdh 912 (1282)
T KOG0921|consen 899 GTQRKFAGNKFSDH 912 (1282)
T ss_pred cchhhccccccccc
Confidence 44444444444443
No 153
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.79 E-value=1.2e-05 Score=87.11 Aligned_cols=71 Identities=18% Similarity=0.324 Sum_probs=64.2
Q ss_pred ccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeE
Q 005712 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 401 (681)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~ 401 (681)
....+|+|-|||..++.++|+.+|+.||.|+.|+. |-..+|.+||+|-+..+|++|+++||+++|.|+.|+
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 34579999999999999999999999999999655 344689999999999999999999999999999876
No 154
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.64 E-value=5.4e-05 Score=78.15 Aligned_cols=81 Identities=21% Similarity=0.332 Sum_probs=73.1
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeE--------EEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeecc
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVI--------EVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGK 220 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~--------~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr 220 (681)
...+|||.+||..+++++|.++|.+||.|. .|.|.+++.|+++|+-|.|.|.+...|+.|+.-+++..+++.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 556899999999999999999999999873 477889999999999999999999999999999999999998
Q ss_pred ccCCCCCCC
Q 005712 221 RCGTAPSED 229 (681)
Q Consensus 221 ~i~v~~~~~ 229 (681)
.|+|..+..
T Consensus 145 ~ikvs~a~~ 153 (351)
T KOG1995|consen 145 TIKVSLAER 153 (351)
T ss_pred Cchhhhhhh
Confidence 887776654
No 155
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.59 E-value=9.7e-05 Score=81.75 Aligned_cols=82 Identities=11% Similarity=0.267 Sum_probs=72.6
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecC---CCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNM---STAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~---~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~ 403 (681)
.++.|||+||+..++++.|...|..||+|..|+|+... ...+.+-++||-|-+..+|++|++.|+|..+....+++-
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 46899999999999999999999999999999997653 234667899999999999999999999999999998888
Q ss_pred EEecc
Q 005712 404 LRARL 408 (681)
Q Consensus 404 ~~~~~ 408 (681)
|.+..
T Consensus 253 Wgk~V 257 (877)
T KOG0151|consen 253 WGKAV 257 (877)
T ss_pred ccccc
Confidence 86544
No 156
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.55 E-value=0.00019 Score=58.84 Aligned_cols=68 Identities=22% Similarity=0.449 Sum_probs=46.7
Q ss_pred CEEEEcCCCccCCHHHHH----HHHhhcC-CeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCC
Q 005712 151 HEIFIGGLDRDATQEDVR----KVFERIG-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (681)
Q Consensus 151 ~tVfV~NLp~~~teedL~----~~F~~~G-~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~ 225 (681)
..|+|.|||.+.+...|+ .++..|| .|..| +.+.|.|.|.+.+.|.+|++.|++..+.|.+|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 469999999998877755 5556776 67665 13689999999999999999999999999998876
Q ss_pred CCC
Q 005712 226 PSE 228 (681)
Q Consensus 226 ~~~ 228 (681)
...
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 654
No 157
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.49 E-value=0.00028 Score=57.85 Aligned_cols=67 Identities=12% Similarity=0.294 Sum_probs=46.2
Q ss_pred eeeeecCCCCCCCHH----HHHhhhcccC-cEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEE
Q 005712 329 KTVFLDGVPPHWKEN----QIRDQIKGYG-DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (681)
Q Consensus 329 ~~l~V~nLp~~~t~~----~L~~~F~~~G-~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~ 403 (681)
..|+|.|||...+.. -|+.++..+| .|..|. .+.|+|.|.+++.|.+|.+.|+|..+.|+.|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 469999999987765 4556666775 555551 3579999999999999999999999999999888
Q ss_pred EE
Q 005712 404 LR 405 (681)
Q Consensus 404 ~~ 405 (681)
+.
T Consensus 73 ~~ 74 (90)
T PF11608_consen 73 FS 74 (90)
T ss_dssp SS
T ss_pred Ec
Confidence 64
No 158
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.42 E-value=3.4e-05 Score=80.36 Aligned_cols=148 Identities=24% Similarity=0.361 Sum_probs=111.6
Q ss_pred CEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCC-eeeccccCCCCCCC
Q 005712 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNP-VICGKRCGTAPSED 229 (681)
Q Consensus 151 ~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~-~l~Gr~i~v~~~~~ 229 (681)
..++|+||.+.++..+|..+|...-.-.+-.++ ...|||||...+..-|.+|++.++++ .+.|+.+.+..+.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl------~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL------VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee------eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 368999999999999999999763111111111 13589999999999999999999885 58899988866543
Q ss_pred ----CCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCC
Q 005712 230 ----NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 305 (681)
Q Consensus 230 ----~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~ 305 (681)
.+++-|.|+|+...|+-|..++.++|. +..|..+..... .-..-|+|.+.+.+..|+..|++..+.
T Consensus 76 kkqrsrk~Qirnippql~wevld~Ll~qyg~--ve~~eqvnt~~e----tavvnvty~~~~~~~~ai~kl~g~Q~e---- 145 (584)
T KOG2193|consen 76 KKQRSRKIQIRNIPPQLQWEVLDSLLAQYGT--VENCEQVNTDSE----TAVVNVTYSAQQQHRQAIHKLNGPQLE---- 145 (584)
T ss_pred HHHHhhhhhHhcCCHHHHHHHHHHHHhccCC--HhHhhhhccchH----HHHHHHHHHHHHHHHHHHHhhcchHhh----
Confidence 578999999999999999999999998 777755332111 112236788999999999999998773
Q ss_pred Cccceeccc
Q 005712 306 ERTVKVAFA 314 (681)
Q Consensus 306 gr~l~v~~a 314 (681)
...+++.+-
T Consensus 146 n~~~k~~Yi 154 (584)
T KOG2193|consen 146 NQHLKVGYI 154 (584)
T ss_pred hhhhhcccC
Confidence 455555543
No 159
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.26 E-value=0.00028 Score=71.66 Aligned_cols=79 Identities=19% Similarity=0.436 Sum_probs=61.1
Q ss_pred CCCEEEEcCCCccCCHHHH------HHHHhhcCCeEEEEEeecCCC-CCccceE--EEEecchhHHHHHHHhcCCCeeec
Q 005712 149 KEHEIFIGGLDRDATQEDV------RKVFERIGEVIEVRLHKNFST-NRNKGYA--FVKFANKEHAKRALTEMKNPVICG 219 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL------~~~F~~~G~V~~v~i~~d~~t-g~skG~a--FVeF~~~e~A~~Al~~l~g~~l~G 219 (681)
...-|||-+||+.+..+++ .++|.+||.|..|.|-+.-.+ ....+.+ ||+|.+.++|.+||.++++..+.|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 4567899999998877773 479999999998877543211 1122334 999999999999999999999999
Q ss_pred cccCCCCC
Q 005712 220 KRCGTAPS 227 (681)
Q Consensus 220 r~i~v~~~ 227 (681)
|.|+...-
T Consensus 193 r~lkatYG 200 (480)
T COG5175 193 RVLKATYG 200 (480)
T ss_pred ceEeeecC
Confidence 99876543
No 160
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.23 E-value=0.00021 Score=74.16 Aligned_cols=80 Identities=30% Similarity=0.506 Sum_probs=72.3
Q ss_pred CCCEEE-EcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 149 KEHEIF-IGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 149 ~~~tVf-V~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
...++| |.||++.+++++|+.+|..+|.|+.+++..+..++.++|+|||.|.....+.+++.. +...+.++.+.+...
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 455666 999999999999999999999999999999999999999999999999999999987 888888888877655
Q ss_pred CC
Q 005712 228 ED 229 (681)
Q Consensus 228 ~~ 229 (681)
..
T Consensus 262 ~~ 263 (285)
T KOG4210|consen 262 EP 263 (285)
T ss_pred CC
Confidence 43
No 161
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.17 E-value=0.00065 Score=59.66 Aligned_cols=58 Identities=28% Similarity=0.534 Sum_probs=39.1
Q ss_pred CEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCC
Q 005712 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKN 214 (681)
Q Consensus 151 ~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g 214 (681)
+.|.|.++...++.++|+++|++||.|..|.+... ...|||.|.+.+.|++|++.+.-
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~ 59 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKE 59 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHh
Confidence 57899999999999999999999999999988543 33799999999999999998653
No 162
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.06 E-value=0.00047 Score=70.36 Aligned_cols=75 Identities=19% Similarity=0.376 Sum_probs=67.7
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcC--CeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIG--EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G--~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~ 223 (681)
...++||+||-|.+|++||.+.+...| .+.+++++.++.+|++||||.|...+..+.++.++.|-.+.|+|..-.
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~ 155 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPT 155 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCe
Confidence 456899999999999999999998877 578899999999999999999999999999999999999999887543
No 163
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=0.0026 Score=69.41 Aligned_cols=119 Identities=15% Similarity=0.234 Sum_probs=72.5
Q ss_pred hccCCCCEEEEcCCCcc-CCHHHHHHHHhhc----CCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeec
Q 005712 145 RKIKKEHEIFIGGLDRD-ATQEDVRKVFERI----GEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICG 219 (681)
Q Consensus 145 ~~~~~~~tVfV~NLp~~-~teedL~~~F~~~----G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~G 219 (681)
.....+++|-|-||.|+ +.-.+|..+|+.| |.|.+|.|+.. .-|+. .|.-..++|
T Consensus 169 ~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpS-eFGke-------------------RM~eEeV~G 228 (650)
T KOG2318|consen 169 VLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPS-EFGKE-------------------RMKEEEVHG 228 (650)
T ss_pred ccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechh-hhhHH-------------------HhhhhcccC
Confidence 34557899999999997 7789999999886 58999999764 22222 122333444
Q ss_pred cccCCCCC-CCCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCC
Q 005712 220 KRCGTAPS-EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKP 298 (681)
Q Consensus 220 r~i~v~~~-~~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~ 298 (681)
.++.+... .....- -..+...++-.++.+.+|+ +..++ --||.|+|.+++.|.+....+.|.
T Consensus 229 P~~el~~~~e~~~~s---~sD~ee~~~~~~~kLR~Yq---~~rLk-----------YYyAVvecDsi~tA~~vYe~CDG~ 291 (650)
T KOG2318|consen 229 PPKELFKPVEEYKES---ESDDEEEEDVDREKLRQYQ---LNRLK-----------YYYAVVECDSIETAKAVYEECDGI 291 (650)
T ss_pred ChhhhccccccCccc---ccchhhhhhHHHHHHHHHH---hhhhe-----------eEEEEEEecCchHHHHHHHhcCcc
Confidence 43322111 000000 0111222223455556665 22222 347999999999999999999998
Q ss_pred Ce
Q 005712 299 DV 300 (681)
Q Consensus 299 ~~ 300 (681)
.+
T Consensus 292 Ef 293 (650)
T KOG2318|consen 292 EF 293 (650)
T ss_pred ee
Confidence 76
No 164
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.90 E-value=0.003 Score=68.67 Aligned_cols=71 Identities=23% Similarity=0.374 Sum_probs=58.2
Q ss_pred CCCCEEEEcCCCcc--CCHH----HHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeec
Q 005712 148 KKEHEIFIGGLDRD--ATQE----DVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICG 219 (681)
Q Consensus 148 ~~~~tVfV~NLp~~--~tee----dL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~G 219 (681)
--...|+|.|+|-- +..+ -|.++|+++|+|+.+.++.+..+| ++||.|++|.+..+|+.|++.|||..|.-
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecc
Confidence 35578999999952 2223 356789999999999999886655 99999999999999999999999877653
No 165
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.89 E-value=0.0024 Score=48.63 Aligned_cols=53 Identities=21% Similarity=0.523 Sum_probs=43.7
Q ss_pred CCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHH
Q 005712 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRAL 209 (681)
Q Consensus 150 ~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al 209 (681)
+++|-|.+.+.+..+ .|..+|.+||+|+.+.+. ....+.||+|.+..+|++||
T Consensus 1 ~~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 357889999987765 466699999999998885 23558999999999999996
No 166
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.75 E-value=0.0029 Score=62.61 Aligned_cols=94 Identities=16% Similarity=0.236 Sum_probs=78.7
Q ss_pred HHHHHHHHhCCCCeeeCCCCccceecccCCCCCCChhhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCC
Q 005712 287 DAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMST 366 (681)
Q Consensus 287 ~A~~Al~~l~g~~~~~g~~gr~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~ 366 (681)
-|..|-..|.+... .++.++|.|+.. ..|+|.||...++-+.|...|+.||.|....+..| ..
T Consensus 6 ~ae~ak~eLd~~~~----~~~~lr~rfa~~------------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r 68 (275)
T KOG0115|consen 6 LAEIAKRELDGRFP----KGRSLRVRFAMH------------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DR 68 (275)
T ss_pred HHHHHHHhcCCCCC----CCCceEEEeecc------------ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-cc
Confidence 35566667787766 589999998864 68999999999999999999999999998887777 36
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHhCCceecC
Q 005712 367 AKRKDYGFIDFSTHEAAVACINAINNKEFSD 397 (681)
Q Consensus 367 g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g 397 (681)
++..+-++|+|...-.|.+|+..++..-|.+
T Consensus 69 ~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~ 99 (275)
T KOG0115|consen 69 GKPTREGIVEFAKKPNARKAARRCREGGFGG 99 (275)
T ss_pred ccccccchhhhhcchhHHHHHHHhccCcccc
Confidence 7888999999999999999998886555554
No 167
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.68 E-value=0.0024 Score=69.37 Aligned_cols=75 Identities=16% Similarity=0.308 Sum_probs=61.0
Q ss_pred ceeeeecCCCCC------CCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC-Cee
Q 005712 328 VKTVFLDGVPPH------WKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNS 400 (681)
Q Consensus 328 ~~~l~V~nLp~~------~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g-~~i 400 (681)
..+|+|.|+|-- .-..-|..+|+++|.|+.+.++.+..+| .+||.|++|.+..+|+.|++.|||+.|.- +..
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 368899999863 2234577899999999999999886554 99999999999999999999999998874 444
Q ss_pred EEE
Q 005712 401 KVK 403 (681)
Q Consensus 401 ~v~ 403 (681)
.|.
T Consensus 137 ~v~ 139 (698)
T KOG2314|consen 137 FVR 139 (698)
T ss_pred Eee
Confidence 443
No 168
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.68 E-value=0.0036 Score=63.81 Aligned_cols=78 Identities=22% Similarity=0.447 Sum_probs=61.6
Q ss_pred ceeeeecCCCCCCCHHH----H--HhhhcccCcEEEEEEeecCCCCC-cce--EEEEEeCCHHHHHHHHHHhCCceecCC
Q 005712 328 VKTVFLDGVPPHWKENQ----I--RDQIKGYGDVIRIVLARNMSTAK-RKD--YGFIDFSTHEAAVACINAINNKEFSDG 398 (681)
Q Consensus 328 ~~~l~V~nLp~~~t~~~----L--~~~F~~~G~v~~v~i~~d~~~g~-~rG--~aFV~F~~~~~A~~Ai~~lng~~~~g~ 398 (681)
.+-+||-+|+..+-.++ | .++|.+||.|..|.|-+...... -.+ -.||+|.+.++|.+||.+.+|..+.||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 36789999998876665 3 37899999999998866542211 112 249999999999999999999999999
Q ss_pred eeEEEEE
Q 005712 399 NSKVKLR 405 (681)
Q Consensus 399 ~i~v~~~ 405 (681)
.|++.+.
T Consensus 194 ~lkatYG 200 (480)
T COG5175 194 VLKATYG 200 (480)
T ss_pred eEeeecC
Confidence 9988864
No 169
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.66 E-value=0.045 Score=58.03 Aligned_cols=67 Identities=13% Similarity=0.251 Sum_probs=55.8
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeec---CCC--CC--------cceEEEEEeCCHHHHHHHHHHhCCc
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARN---MST--AK--------RKDYGFIDFSTHEAAVACINAINNK 393 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d---~~~--g~--------~rG~aFV~F~~~~~A~~Ai~~lng~ 393 (681)
..++|.+-|||.+-.-+-|.++|..+|.|..|+|... ... +. .+-+|+|+|++.+.|.+|.+.||..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 5789999999999888999999999999999999765 222 11 2557999999999999999877543
No 170
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=96.65 E-value=0.017 Score=59.27 Aligned_cols=8 Identities=0% Similarity=-0.139 Sum_probs=3.2
Q ss_pred cccCcccH
Q 005712 237 NICNTWTK 244 (681)
Q Consensus 237 nLp~~~te 244 (681)
..|.++++
T Consensus 156 k~p~Nin~ 163 (465)
T KOG3973|consen 156 KQPGNINE 163 (465)
T ss_pred CCCCCchH
Confidence 33444443
No 171
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.51 E-value=0.0031 Score=62.41 Aligned_cols=104 Identities=19% Similarity=0.187 Sum_probs=86.3
Q ss_pred HHHHHHHhcCCCeeeccccCCCCCCCCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeC
Q 005712 204 HAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFS 283 (681)
Q Consensus 204 ~A~~Al~~l~g~~l~Gr~i~v~~~~~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~ 283 (681)
-|..|..+|++..+.++.+.|..+.. ..|+|.||..-+..+.+.+.|+.+|. |....++.| ..++..+-++|.|.
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~-a~l~V~nl~~~~sndll~~~f~~fg~--~e~av~~vD--~r~k~t~eg~v~~~ 80 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH-AELYVVNLMQGASNDLLEQAFRRFGP--IERAVAKVD--DRGKPTREGIVEFA 80 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc-ceEEEEecchhhhhHHHHHhhhhcCc--cchheeeec--ccccccccchhhhh
Confidence 45666667899999999999998888 99999999999999999999999998 777777766 57788889999999
Q ss_pred CHHHHHHHHHHhCCCCeeeCCCCccceec
Q 005712 284 CHVDAMAAYKRLQKPDVVFGHPERTVKVA 312 (681)
Q Consensus 284 s~e~A~~Al~~l~g~~~~~g~~gr~l~v~ 312 (681)
..-.|.+|+..+...-+.....+++..|.
T Consensus 81 ~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 81 KKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred cchhHHHHHHHhccCccccCCCCCccCCC
Confidence 99999999998876655444445554444
No 172
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.39 E-value=0.0034 Score=66.22 Aligned_cols=66 Identities=23% Similarity=0.336 Sum_probs=56.1
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeec---CCCC--C--------ccceEEEEecchhHHHHHHHhcC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKN---FSTN--R--------NKGYAFVKFANKEHAKRALTEMK 213 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d---~~tg--~--------skG~aFVeF~~~e~A~~Al~~l~ 213 (681)
..+++|.+-|||.+-.-+.|.++|..||.|..|+|+.- +.+. . .+-+|+|+|...+.|.+|.+.|+
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 37899999999999988999999999999999999864 2222 1 24579999999999999998765
No 173
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.18 E-value=0.0085 Score=45.59 Aligned_cols=52 Identities=13% Similarity=0.513 Sum_probs=41.4
Q ss_pred eeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q 005712 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387 (681)
Q Consensus 329 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai 387 (681)
+.|-|.+.+....+ .|..+|.+||.|+.+.+.. ..-+.+|+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 46788888877654 4555888999999998862 2347999999999999985
No 174
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.15 E-value=0.011 Score=59.45 Aligned_cols=63 Identities=17% Similarity=0.325 Sum_probs=50.9
Q ss_pred HHHHHhhhcccCcEEEEEEeecCCCCCc-ceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEE
Q 005712 342 ENQIRDQIKGYGDVIRIVLARNMSTAKR-KDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (681)
Q Consensus 342 ~~~L~~~F~~~G~v~~v~i~~d~~~g~~-rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (681)
++++++.+++||.|..|.|...+..-.. ---.||+|+..++|.+|+-.|||+.|+|+.+...+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 4678899999999999998876432211 12379999999999999999999999999876544
No 175
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.08 E-value=0.0025 Score=63.21 Aligned_cols=62 Identities=16% Similarity=0.343 Sum_probs=51.3
Q ss_pred HHHHhhhc-ccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 343 NQIRDQIK-GYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 343 ~~L~~~F~-~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
++|...|. +||.|+.+.|-.+ ..-.-+|-++|.|...++|++|+..||+..|.|++|.+++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 45555555 8999999977554 23456888999999999999999999999999999998873
No 176
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.95 E-value=0.0027 Score=63.00 Aligned_cols=59 Identities=31% Similarity=0.474 Sum_probs=49.2
Q ss_pred HHHHHHHh-hcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCC
Q 005712 165 EDVRKVFE-RIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (681)
Q Consensus 165 edL~~~F~-~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v 224 (681)
++|...|+ +||+|+++.|+.+. .-..+|-+||+|...++|++|++.||+..+.|++|..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~a 142 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHA 142 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCccee
Confidence 44555555 89999999887763 3467899999999999999999999999999998844
No 177
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.80 E-value=0.0071 Score=59.88 Aligned_cols=72 Identities=21% Similarity=0.421 Sum_probs=61.5
Q ss_pred ceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCC--------CCcce----EEEEEeCCHHHHHHHHHHhCCcee
Q 005712 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMST--------AKRKD----YGFIDFSTHEAAVACINAINNKEF 395 (681)
Q Consensus 328 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~--------g~~rG----~aFV~F~~~~~A~~Ai~~lng~~~ 395 (681)
.-.||+++||+.....-|+++|++||.|-+|.|.....+ +.++. -|+|+|.+-..|.++...||+..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 468999999999999999999999999999999765443 22222 368999999999999999999999
Q ss_pred cCCe
Q 005712 396 SDGN 399 (681)
Q Consensus 396 ~g~~ 399 (681)
+|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9975
No 178
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.62 E-value=0.032 Score=51.28 Aligned_cols=56 Identities=14% Similarity=0.428 Sum_probs=45.7
Q ss_pred HHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEec
Q 005712 343 NQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (681)
Q Consensus 343 ~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~ 407 (681)
.+|.+.|..||.|.=|+++.+ .-+|+|.+.+.|.+|+ .|+|.+|.|+.|+|.++..
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE---
T ss_pred HHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHH-ccCCcEECCEEEEEEeCCc
Confidence 367788999999888887655 3799999999999998 8999999999999988643
No 179
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.58 E-value=0.033 Score=48.26 Aligned_cols=72 Identities=17% Similarity=0.266 Sum_probs=49.1
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEe-ecC------CCCCccceEEEEecchhHHHHHHHhcCCCeeeccc
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLH-KNF------STNRNKGYAFVKFANKEHAKRALTEMKNPVICGKR 221 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~-~d~------~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~ 221 (681)
..+.|.|=+.|.. ....|..+|++||.|++..-+ ++. ..-....+..|+|.+..+|++||. .||.+|.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 4567999999988 556788999999999887511 000 001235589999999999999997 4888887754
Q ss_pred c
Q 005712 222 C 222 (681)
Q Consensus 222 i 222 (681)
|
T Consensus 83 m 83 (100)
T PF05172_consen 83 M 83 (100)
T ss_dssp E
T ss_pred E
Confidence 3
No 180
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.52 E-value=0.02 Score=62.78 Aligned_cols=65 Identities=20% Similarity=0.288 Sum_probs=54.4
Q ss_pred ccCCCCEEEEcCCCccCCHHHHHHHHhh-cCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCe
Q 005712 146 KIKKEHEIFIGGLDRDATQEDVRKVFER-IGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPV 216 (681)
Q Consensus 146 ~~~~~~tVfV~NLp~~~teedL~~~F~~-~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~ 216 (681)
....++.|+|.||-.-.|.-+|+.++.. .|.|++. .+| +-+..|||.|.+.++|...+.+|+|..
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmD----kIKShCyV~yss~eEA~atr~AlhnV~ 505 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMD----KIKSHCYVSYSSVEEAAATREALHNVQ 505 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH--HHH----HhhcceeEecccHHHHHHHHHHHhccc
Confidence 3446789999999999999999999995 7777777 444 346689999999999999999999854
No 181
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.39 E-value=0.062 Score=46.58 Aligned_cols=72 Identities=18% Similarity=0.259 Sum_probs=48.3
Q ss_pred ceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEe-ecC------CCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCee
Q 005712 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLA-RNM------STAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNS 400 (681)
Q Consensus 328 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~-~d~------~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i 400 (681)
.+.|.|-+.|.. ....|.+.|++||.|....-. ++. ..-.......|+|+++.+|.+|| ..||..|.|..+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcEE
Confidence 356888889887 556788899999999877511 110 00112347899999999999999 669999998755
Q ss_pred E
Q 005712 401 K 401 (681)
Q Consensus 401 ~ 401 (681)
-
T Consensus 84 v 84 (100)
T PF05172_consen 84 V 84 (100)
T ss_dssp E
T ss_pred E
Confidence 3
No 182
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=95.22 E-value=0.098 Score=60.88 Aligned_cols=58 Identities=14% Similarity=0.138 Sum_probs=41.3
Q ss_pred CCCHHHHHhhhcccCc-----EEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 339 HWKENQIRDQIKGYGD-----VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 339 ~~t~~~L~~~F~~~G~-----v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
.++..+|-.+...-+. |-.|.|..+ |.||+-.. ..|...+..|++..+.|+.|.|+..
T Consensus 498 ~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~--------~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (629)
T PRK11634 498 GVEVRHIVGAIANEGDISSRYIGNIKLFAS--------HSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLL 560 (629)
T ss_pred CCCHHHHHHHHHhhcCCChhhCCcEEEeCC--------ceEEEcCh-hhHHHHHHHhccccccCCceEEEEC
Confidence 4667777666654443 345666544 78998865 4577888999999999999887754
No 183
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=94.67 E-value=0.11 Score=60.59 Aligned_cols=26 Identities=27% Similarity=0.555 Sum_probs=22.5
Q ss_pred CccceEEEEecchhHHHHHHHhcCCC
Q 005712 190 RNKGYAFVKFANKEHAKRALTEMKNP 215 (681)
Q Consensus 190 ~skG~aFVeF~~~e~A~~Al~~l~g~ 215 (681)
.-+||-||+-..+.++..||+-+-+.
T Consensus 208 ~lkGyIYIEA~KqshV~~Ai~gv~ni 233 (1024)
T KOG1999|consen 208 HLKGYIYIEADKQSHVKEAIEGVRNI 233 (1024)
T ss_pred ccceeEEEEechhHHHHHHHhhhhhh
Confidence 56899999999999999999987554
No 184
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.31 E-value=0.12 Score=40.37 Aligned_cols=55 Identities=20% Similarity=0.298 Sum_probs=44.9
Q ss_pred ceeeeecCCCCCCCHHHHHhhhccc---CcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 005712 328 VKTVFLDGVPPHWKENQIRDQIKGY---GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390 (681)
Q Consensus 328 ~~~l~V~nLp~~~t~~~L~~~F~~~---G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~l 390 (681)
...|+|+|+. +++.++|+.+|..| .....|.++-|. -|=|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4689999985 58889999999998 234577777774 3889999999999999765
No 185
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=94.25 E-value=0.052 Score=56.84 Aligned_cols=75 Identities=13% Similarity=0.249 Sum_probs=62.3
Q ss_pred eeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCC---CCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEE
Q 005712 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMS---TAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (681)
Q Consensus 329 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~---~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (681)
..|.|.||...+|.+++..+|.-.|.|..+.|+.... -....-.|||.|.+...+..| +.|.++.|-++.|.|..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~va-QhLtntvfvdraliv~p 85 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVA-QHLTNTVFVDRALIVRP 85 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHH-hhhccceeeeeeEEEEe
Confidence 4899999999999999999999999999999876422 134556899999999998888 47888888888776653
No 186
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.18 E-value=0.067 Score=49.23 Aligned_cols=69 Identities=17% Similarity=0.297 Sum_probs=51.0
Q ss_pred CCCEEEEcCCCc-----cCCH----HHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeec
Q 005712 149 KEHEIFIGGLDR-----DATQ----EDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICG 219 (681)
Q Consensus 149 ~~~tVfV~NLp~-----~~te----edL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~G 219 (681)
+..||.|.=+.. ..-. .+|.+.|.+||+|+-||++-+ .-+|+|.+-++|.+||. +++..+.|
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g 96 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNG 96 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETT
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECC
Confidence 556777776651 1222 357778889999999998754 58999999999999996 79999999
Q ss_pred cccCCCC
Q 005712 220 KRCGTAP 226 (681)
Q Consensus 220 r~i~v~~ 226 (681)
+.|.|..
T Consensus 97 ~~l~i~L 103 (146)
T PF08952_consen 97 RTLKIRL 103 (146)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9886543
No 187
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.52 E-value=0.16 Score=51.31 Aligned_cols=74 Identities=16% Similarity=0.284 Sum_probs=54.4
Q ss_pred CCEEEEcCCC--ccC---CHHHHHHHHhhcCCeEEEEEeecCCCCCc-cceEEEEecchhHHHHHHHhcCCCeeeccccC
Q 005712 150 EHEIFIGGLD--RDA---TQEDVRKVFERIGEVIEVRLHKNFSTNRN-KGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (681)
Q Consensus 150 ~~tVfV~NLp--~~~---teedL~~~F~~~G~V~~v~i~~d~~tg~s-kG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~ 223 (681)
.+.|.++|.= -.+ -++++++.+++||.|..|.|...+..-.. .---||+|...++|.+|+-.|||..+.|+.+.
T Consensus 281 tkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~ 360 (378)
T KOG1996|consen 281 TKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVS 360 (378)
T ss_pred hHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeee
Confidence 3445666552 223 34668889999999999999766332211 11379999999999999999999999999764
No 188
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=92.54 E-value=0.44 Score=39.45 Aligned_cols=55 Identities=22% Similarity=0.469 Sum_probs=41.4
Q ss_pred CCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcC
Q 005712 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMK 213 (681)
Q Consensus 150 ~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~ 213 (681)
....+|. .|......||.++|+.||.|. |..+-| ..|||.....+.|..|+..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 4556666 999999999999999999884 555544 269999999999999998765
No 189
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=92.42 E-value=0.57 Score=36.72 Aligned_cols=54 Identities=22% Similarity=0.412 Sum_probs=43.7
Q ss_pred CEEEEcCCCccCCHHHHHHHHhhc---CCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhc
Q 005712 151 HEIFIGGLDRDATQEDVRKVFERI---GEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212 (681)
Q Consensus 151 ~tVfV~NLp~~~teedL~~~F~~~---G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l 212 (681)
..|.|+++. +++.++|+.+|..| .....|..+-|. .|=|.|.+.+.|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 479999986 57888999999998 124577777662 4899999999999999764
No 190
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=91.89 E-value=0.42 Score=46.15 Aligned_cols=72 Identities=17% Similarity=0.289 Sum_probs=47.4
Q ss_pred ceeeeecCCCCCCCHHHHHhhhcc-cCcE---EEEE--EeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCe
Q 005712 328 VKTVFLDGVPPHWKENQIRDQIKG-YGDV---IRIV--LARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN 399 (681)
Q Consensus 328 ~~~l~V~nLp~~~t~~~L~~~F~~-~G~v---~~v~--i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~ 399 (681)
..+|.|++||+.+|++++.+.+.. ++.. ..+. +.........-..|+|.|.+.+++..-+..++|+.|.+..
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 468999999999999999998777 5554 2333 1111111223446999999999999999999998887643
No 191
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=91.77 E-value=0.11 Score=57.21 Aligned_cols=75 Identities=16% Similarity=0.257 Sum_probs=58.9
Q ss_pred hcccceeeeecCCCCCCCHHHHHhhhcc-cCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec---CCe
Q 005712 324 IMAHVKTVFLDGVPPHWKENQIRDQIKG-YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS---DGN 399 (681)
Q Consensus 324 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~---g~~ 399 (681)
....++.|+|.||-.-+|.-+|+.++.+ .|.|+..+| | +.+-.|||.|.+.++|.+.+.+|||..+- .+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--D----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--D----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--H----HhhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 3455789999999999999999999995 566666633 2 23557999999999999999999998764 355
Q ss_pred eEEEE
Q 005712 400 SKVKL 404 (681)
Q Consensus 400 i~v~~ 404 (681)
|.+.+
T Consensus 514 L~adf 518 (718)
T KOG2416|consen 514 LIADF 518 (718)
T ss_pred eEeee
Confidence 55554
No 192
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=91.56 E-value=0.23 Score=48.01 Aligned_cols=74 Identities=15% Similarity=0.170 Sum_probs=47.7
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhh-cCCe---EEEEEeec-CCCC-CccceEEEEecchhHHHHHHHhcCCCeeeccc
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFER-IGEV---IEVRLHKN-FSTN-RNKGYAFVKFANKEHAKRALTEMKNPVICGKR 221 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~-~G~V---~~v~i~~d-~~tg-~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~ 221 (681)
.....|-|++||+.+|++++.+.++. ++.. ..+.-... .... ..-.-|||.|.+.+++......+++..+....
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 35568999999999999999887776 6655 34442222 1111 12235999999999999999999998877665
No 193
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=90.96 E-value=0.16 Score=52.70 Aligned_cols=78 Identities=18% Similarity=0.344 Sum_probs=59.3
Q ss_pred CCCEEEEcCCCccCCHHHHH---HHHhhcCCeEEEEEeecCCCCC---ccceEEEEecchhHHHHHHHhcCCCeeecccc
Q 005712 149 KEHEIFIGGLDRDATQEDVR---KVFERIGEVIEVRLHKNFSTNR---NKGYAFVKFANKEHAKRALTEMKNPVICGKRC 222 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~---~~F~~~G~V~~v~i~~d~~tg~---skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i 222 (681)
..+-+||-+|+..+..+.+. +.|.+||.|..|.+.++..+-. .-..++|+|...++|..||...++.++.|+.+
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 34568888999887655554 4889999999999887652111 11238999999999999999999999999986
Q ss_pred CCCC
Q 005712 223 GTAP 226 (681)
Q Consensus 223 ~v~~ 226 (681)
+...
T Consensus 156 ka~~ 159 (327)
T KOG2068|consen 156 KASL 159 (327)
T ss_pred HHhh
Confidence 5443
No 194
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=90.70 E-value=1.8 Score=38.29 Aligned_cols=68 Identities=18% Similarity=0.149 Sum_probs=52.5
Q ss_pred ceeeeecCCCCCCCHHHHHhhhccc-CcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC
Q 005712 328 VKTVFLDGVPPHWKENQIRDQIKGY-GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397 (681)
Q Consensus 328 ~~~l~V~nLp~~~t~~~L~~~F~~~-G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g 397 (681)
...+.+-..|+.++.++|..+.+.+ ..|..++|+++. ..++=-+.++|.+.++|..-...+||+.|+-
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3455566666677777787666665 467889999884 2356678999999999999999999998875
No 195
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=89.61 E-value=0.85 Score=50.22 Aligned_cols=72 Identities=19% Similarity=0.266 Sum_probs=57.3
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcc--cCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--ceecCCeeEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKG--YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINN--KEFSDGNSKV 402 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~--~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng--~~~~g~~i~v 402 (681)
..|.|.|+.||..+-.++|+.+|+. +-.++.|.+..+. -=||+|++..+|+.|.+.|.. ++|.|+.|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 3578899999999999999999985 6678888876552 159999999999999887743 3677777766
Q ss_pred EEE
Q 005712 403 KLR 405 (681)
Q Consensus 403 ~~~ 405 (681)
.|+
T Consensus 247 RIK 249 (684)
T KOG2591|consen 247 RIK 249 (684)
T ss_pred hhh
Confidence 554
No 196
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=88.70 E-value=1.6 Score=36.20 Aligned_cols=55 Identities=16% Similarity=0.424 Sum_probs=40.7
Q ss_pred eeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 005712 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINN 392 (681)
Q Consensus 329 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng 392 (681)
...+|. +|..+...||.++|+.||.|.-- .+-+. -|||...+.+.|..|+..++-
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~Vs-Wi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVS-WINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEE-EECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEE-EEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 455666 99999999999999999987644 44442 599999999999999888763
No 197
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=88.46 E-value=1.6 Score=51.45 Aligned_cols=25 Identities=8% Similarity=0.212 Sum_probs=20.9
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCC
Q 005712 274 SRGFAFVMFSCHVDAMAAYKRLQKP 298 (681)
Q Consensus 274 skG~aFV~F~s~e~A~~Al~~l~g~ 298 (681)
-+||.||+-........|++.+.+.
T Consensus 209 lkGyIYIEA~KqshV~~Ai~gv~ni 233 (1024)
T KOG1999|consen 209 LKGYIYIEADKQSHVKEAIEGVRNI 233 (1024)
T ss_pred cceeEEEEechhHHHHHHHhhhhhh
Confidence 4899999999999999999876643
No 198
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=87.12 E-value=0.59 Score=56.25 Aligned_cols=22 Identities=9% Similarity=0.175 Sum_probs=14.3
Q ss_pred EEcCCCcc----CCHHHHHHHHhhcC
Q 005712 154 FIGGLDRD----ATQEDVRKVFERIG 175 (681)
Q Consensus 154 fV~NLp~~----~teedL~~~F~~~G 175 (681)
--..||+. .|-++|.+++..+-
T Consensus 414 ~~~elPftf~~P~s~eel~~lL~~~~ 439 (840)
T PF04147_consen 414 AKSELPFTFPCPSSHEELLELLDGYS 439 (840)
T ss_pred cccCCCceecCCCCHHHHHHHHhcCC
Confidence 33455554 46788888887653
No 199
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=86.60 E-value=1.5 Score=39.99 Aligned_cols=69 Identities=9% Similarity=0.190 Sum_probs=51.3
Q ss_pred eeeeecCCCCCC----CHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEE
Q 005712 329 KTVFLDGVPPHW----KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (681)
Q Consensus 329 ~~l~V~nLp~~~----t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (681)
.+|.|+=|..++ +-..|...++.||+|..|.+.- +--|.|.|.+..+|-+|+.++.. ...|..+.|.|
T Consensus 87 sTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 87 STIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred eeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 466666555543 2234455667899999998742 23599999999999999999887 67788888887
Q ss_pred E
Q 005712 405 R 405 (681)
Q Consensus 405 ~ 405 (681)
.
T Consensus 159 q 159 (166)
T PF15023_consen 159 Q 159 (166)
T ss_pred c
Confidence 5
No 200
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.36 E-value=1.4 Score=46.62 Aligned_cols=65 Identities=22% Similarity=0.257 Sum_probs=50.1
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCC-eEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccc
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGE-VIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKR 221 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~-V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~ 221 (681)
-.+.|-|-++|.....+||...|+.|+. -..|+.+-| -.||..|.+...|..||. |...+|.-|+
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt-~kh~~lKiRp 455 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALT-LKHDWLKIRP 455 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhh-ccCceEEeee
Confidence 4578999999999999999999999974 345555543 269999999999999997 4545554443
No 201
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=85.98 E-value=2.2 Score=39.02 Aligned_cols=66 Identities=23% Similarity=0.291 Sum_probs=49.7
Q ss_pred hhhhccCCCCEEEEcCCCccCC-HHH---HHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCC
Q 005712 142 AKDRKIKKEHEIFIGGLDRDAT-QED---VRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKN 214 (681)
Q Consensus 142 ~~~~~~~~~~tVfV~NLp~~~t-eed---L~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g 214 (681)
.+..+..+-.||.|+=|..++. .+| |...++.||+|.+|.++- +..|.|.|.+..+|=+|+.+.+.
T Consensus 78 kk~~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s 147 (166)
T PF15023_consen 78 KKNTKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS 147 (166)
T ss_pred cccCCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC
Confidence 3344556778999987766553 234 555678899999998853 44699999999999999998764
No 202
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=85.62 E-value=4.1 Score=36.00 Aligned_cols=68 Identities=10% Similarity=0.089 Sum_probs=49.2
Q ss_pred CCEEEEcCCCccCCHHHHHHHHhhcC-CeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeec
Q 005712 150 EHEIFIGGLDRDATQEDVRKVFERIG-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICG 219 (681)
Q Consensus 150 ~~tVfV~NLp~~~teedL~~~F~~~G-~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~G 219 (681)
...+-+...|.-++-++|..+.+.+- .|..++|++|.. .++=.+.++|.+.++|.......||+.+..
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34444445555566677776666654 578899998732 366679999999999999999999876643
No 203
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=85.22 E-value=2.7 Score=46.43 Aligned_cols=86 Identities=21% Similarity=0.222 Sum_probs=67.0
Q ss_pred hHHHHHHHhcCCCeeeccccCCCCCCCCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEe
Q 005712 203 EHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMF 282 (681)
Q Consensus 203 e~A~~Al~~l~g~~l~Gr~i~v~~~~~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F 282 (681)
+-...+|....+..+.-+-++|.+....+.|.|+-||.++-.++++.+|+.--...+.+|.+-.+ .--||+|
T Consensus 148 dLI~Evlresp~VqvDekgekVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N--------~nWyITf 219 (684)
T KOG2591|consen 148 DLIVEVLRESPNVQVDEKGEKVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN--------DNWYITF 219 (684)
T ss_pred HHHHHHHhcCCCceeccCccccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec--------CceEEEe
Confidence 33455666667777888888888888888899999999999999999998643333667766544 2479999
Q ss_pred CCHHHHHHHHHHhC
Q 005712 283 SCHVDAMAAYKRLQ 296 (681)
Q Consensus 283 ~s~e~A~~Al~~l~ 296 (681)
++..||..|.+.|.
T Consensus 220 esd~DAQqAykylr 233 (684)
T KOG2591|consen 220 ESDTDAQQAYKYLR 233 (684)
T ss_pred ecchhHHHHHHHHH
Confidence 99999999988655
No 204
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=83.40 E-value=0.62 Score=50.35 Aligned_cols=76 Identities=14% Similarity=0.151 Sum_probs=59.9
Q ss_pred CCCEEEEcCCCccC-CHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 149 KEHEIFIGGLDRDA-TQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 149 ~~~tVfV~NLp~~~-teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
+.+.|-+.-+|+.. |-.+|..+|.+||+|..|.|-. +.-.|.|+|.+..+|-+|-. ..+..|.++.|++.+-
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~------~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDY------SSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccC------chhhheeeeeccccccchhc-cccceecCceeEEEEe
Confidence 55677777777765 6688999999999999998832 24469999999999977774 6889999999987666
Q ss_pred CCCC
Q 005712 228 EDND 231 (681)
Q Consensus 228 ~~~~ 231 (681)
.+..
T Consensus 444 nps~ 447 (526)
T KOG2135|consen 444 NPSP 447 (526)
T ss_pred cCCc
Confidence 5543
No 205
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=82.69 E-value=2 Score=41.71 Aligned_cols=59 Identities=10% Similarity=0.176 Sum_probs=45.3
Q ss_pred CHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CceecCCeeEEEEE
Q 005712 341 KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN--NKEFSDGNSKVKLR 405 (681)
Q Consensus 341 t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~ln--g~~~~g~~i~v~~~ 405 (681)
..+.|+++|..++.+..+.+++.. +-..|.|.+.++|.+|...|+ +..|.|..++|-+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~ 68 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFG 68 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE--
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEc
Confidence 457899999999988888777653 358999999999999999999 99999999888765
No 206
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=80.43 E-value=1.8 Score=46.86 Aligned_cols=11 Identities=18% Similarity=0.356 Sum_probs=5.2
Q ss_pred CCEEEEcCCCc
Q 005712 150 EHEIFIGGLDR 160 (681)
Q Consensus 150 ~~tVfV~NLp~ 160 (681)
...+|.-....
T Consensus 121 d~~~WtP~~~t 131 (458)
T PF10446_consen 121 DYEFWTPGATT 131 (458)
T ss_pred cceeecccccc
Confidence 34556554433
No 207
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=80.13 E-value=0.96 Score=50.99 Aligned_cols=71 Identities=14% Similarity=0.205 Sum_probs=61.8
Q ss_pred cccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEE
Q 005712 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (681)
Q Consensus 325 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (681)
.....++||+|+...+..+-++.+...+|.|..+..+. |+|..|..+..+..|+..|+-..+++..+.+.+
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 34467999999999999999999999999887765532 899999999999999999999999998877665
No 208
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.74 E-value=5.4 Score=44.49 Aligned_cols=83 Identities=14% Similarity=0.227 Sum_probs=64.0
Q ss_pred hcccceeeeecCCCCC-CCHHHHHhhhccc----CcEEEEEEeecC----------CCCC--------------------
Q 005712 324 IMAHVKTVFLDGVPPH-WKENQIRDQIKGY----GDVIRIVLARNM----------STAK-------------------- 368 (681)
Q Consensus 324 ~~~~~~~l~V~nLp~~-~t~~~L~~~F~~~----G~v~~v~i~~d~----------~~g~-------------------- 368 (681)
....+++|-|-||.|. +...+|.-+|..| |.|..|.|.... ..|.
T Consensus 170 ~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee 249 (650)
T KOG2318|consen 170 LGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEE 249 (650)
T ss_pred cccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhh
Confidence 3445789999999994 7889999988876 688888875421 0111
Q ss_pred -----------------cceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEe
Q 005712 369 -----------------RKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 369 -----------------~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (681)
.-=||.|+|.+.+.|.+....++|.+|......+.++.
T Consensus 250 ~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 250 EEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 11278999999999999999999999998877777653
No 209
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=79.37 E-value=6.4 Score=32.02 Aligned_cols=57 Identities=21% Similarity=0.323 Sum_probs=34.7
Q ss_pred CCCHHHHHhhhcccC-----cEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEE
Q 005712 339 HWKENQIRDQIKGYG-----DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (681)
Q Consensus 339 ~~t~~~L~~~F~~~G-----~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (681)
.++..+|..++...+ .|-.|.|..+ |+||+-... .|..++.+|++..+.|+.++|+.
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEE
Confidence 467777877776553 5667888655 789988664 68888999999999999988875
No 210
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=78.90 E-value=1 Score=46.90 Aligned_cols=76 Identities=20% Similarity=0.365 Sum_probs=56.8
Q ss_pred eeeeecCCCCCCCHHHH-H--hhhcccCcEEEEEEeecCC-CCC--cceEEEEEeCCHHHHHHHHHHhCCceecCCeeEE
Q 005712 329 KTVFLDGVPPHWKENQI-R--DQIKGYGDVIRIVLARNMS-TAK--RKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 402 (681)
Q Consensus 329 ~~l~V~nLp~~~t~~~L-~--~~F~~~G~v~~v~i~~d~~-~g~--~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v 402 (681)
+-++|-+|+..+-.+.+ + +.|.+||.|..|.+..+.. ... ...-++|+|+..++|..||...+|....|+.+++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 56778888876544443 3 5799999999999888752 111 1123799999999999999999999999987655
Q ss_pred EE
Q 005712 403 KL 404 (681)
Q Consensus 403 ~~ 404 (681)
.+
T Consensus 158 ~~ 159 (327)
T KOG2068|consen 158 SL 159 (327)
T ss_pred hh
Confidence 54
No 211
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=78.79 E-value=1.2 Score=48.34 Aligned_cols=73 Identities=12% Similarity=0.130 Sum_probs=57.3
Q ss_pred ceeeeecCCCCCC-CHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEe
Q 005712 328 VKTVFLDGVPPHW-KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 328 ~~~l~V~nLp~~~-t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (681)
.+.|-+.-.|... +-++|...|.+||.|..|.|-... --|.|+|.+..+|-.|. +.++..|+++-|+|-|-.
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHN 444 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchh-ccccceecCceeEEEEec
Confidence 3455666666654 568999999999999999885542 24899999999997775 678999999999998854
Q ss_pred c
Q 005712 407 R 407 (681)
Q Consensus 407 ~ 407 (681)
.
T Consensus 445 p 445 (526)
T KOG2135|consen 445 P 445 (526)
T ss_pred C
Confidence 4
No 212
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=76.76 E-value=1.7 Score=49.16 Aligned_cols=69 Identities=17% Similarity=0.226 Sum_probs=59.4
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~ 225 (681)
....+|||+||...+..+-++.+...+|-|.+++... |+|.+|.....+.+|+..++...+.+..+.+.
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 4678999999999999999999999999998876643 89999999999999998887777777766543
No 213
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=76.67 E-value=3.7 Score=49.41 Aligned_cols=7 Identities=14% Similarity=0.596 Sum_probs=3.6
Q ss_pred HHHHHhh
Q 005712 167 VRKVFER 173 (681)
Q Consensus 167 L~~~F~~ 173 (681)
|.++|..
T Consensus 741 La~~Fk~ 747 (784)
T PF04931_consen 741 LAAIFKE 747 (784)
T ss_pred HHHHHHH
Confidence 4445654
No 214
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=75.96 E-value=7.2 Score=42.28 Aligned_cols=68 Identities=13% Similarity=0.197 Sum_probs=57.6
Q ss_pred CCEEEEcCCCccCCHHHHHHHHhhcC-CeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeec
Q 005712 150 EHEIFIGGLDRDATQEDVRKVFERIG-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICG 219 (681)
Q Consensus 150 ~~tVfV~NLp~~~teedL~~~F~~~G-~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~G 219 (681)
+..|+|-.+|..+|-.||..|...+- .|..++|++|.. .++=.+.|+|.+.++|....+.+||..+..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 78999999999999999999988754 689999999632 344568899999999999999999876643
No 215
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=75.38 E-value=5.5 Score=38.72 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=43.6
Q ss_pred CHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcC--CCeeeccccCCC
Q 005712 163 TQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMK--NPVICGKRCGTA 225 (681)
Q Consensus 163 teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~--g~~l~Gr~i~v~ 225 (681)
..+.|+++|..++.+..+.+.+. -+=..|.|.+.++|.+|...|+ +..+.|..+++-
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~y 66 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVY 66 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEE
Confidence 45789999999999888877653 3458999999999999999999 888988887553
No 216
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=74.83 E-value=7.5 Score=39.97 Aligned_cols=64 Identities=22% Similarity=0.418 Sum_probs=50.0
Q ss_pred CCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccc
Q 005712 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKR 221 (681)
Q Consensus 150 ~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~ 221 (681)
...|-|-++|+..+ .-|..+|++||+|+..... .+-.+-+|.|.+.-+|++||.. ++++|.|..
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALsk-ng~ii~g~v 260 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSK-NGTIIDGDV 260 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhh-cCeeeccce
Confidence 45788888887644 3578899999999876543 3345899999999999999974 888777653
No 217
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=74.69 E-value=2.4 Score=45.88 Aligned_cols=9 Identities=0% Similarity=-0.105 Sum_probs=3.6
Q ss_pred cchhhhccc
Q 005712 29 PALVEVAKH 37 (681)
Q Consensus 29 ~~~vd~a~~ 37 (681)
++-++.-+.
T Consensus 25 KlTi~Dtlk 33 (458)
T PF10446_consen 25 KLTINDTLK 33 (458)
T ss_pred cccHHHHHH
Confidence 444433333
No 218
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=74.37 E-value=5.9 Score=42.92 Aligned_cols=68 Identities=15% Similarity=0.232 Sum_probs=58.3
Q ss_pred ceeeeecCCCCCCCHHHHHhhhccc-CcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC
Q 005712 328 VKTVFLDGVPPHWKENQIRDQIKGY-GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397 (681)
Q Consensus 328 ~~~l~V~nLp~~~t~~~L~~~F~~~-G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g 397 (681)
.+.|+|=.+|..+|..||..|+..+ -.|..|+|++|.. ..+=.+.|.|.+.++|..-...+||+.|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 5789999999999999999999876 4788999999732 234457899999999999999999999876
No 219
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=74.34 E-value=10 Score=30.20 Aligned_cols=54 Identities=13% Similarity=0.234 Sum_probs=42.1
Q ss_pred CCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeE
Q 005712 339 HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 401 (681)
Q Consensus 339 ~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~ 401 (681)
.++-++|+..++.|+- .+|..+. .|| ||.|.+..+|++|....+++.+..-.+.
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 5778999999999963 4444442 333 8999999999999999999988876543
No 220
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=73.67 E-value=4.6 Score=48.85 Aligned_cols=22 Identities=18% Similarity=0.048 Sum_probs=14.0
Q ss_pred EEEEcCCCccCCHHHHHHHHhh
Q 005712 152 EIFIGGLDRDATQEDVRKVFER 173 (681)
Q Consensus 152 tVfV~NLp~~~teedL~~~F~~ 173 (681)
.-+.-+||.....-+|-.+-++
T Consensus 1443 cev~~~lp~~~~k~~mssiVe~ 1464 (1640)
T KOG0262|consen 1443 CEVELKLPLDKEKLDMSSIVES 1464 (1640)
T ss_pred EEEEEEecCCCcchHHHHHHHH
Confidence 3344468888777776666655
No 221
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=72.78 E-value=7.2 Score=30.49 Aligned_cols=50 Identities=26% Similarity=0.363 Sum_probs=29.3
Q ss_pred chhHHHHHHHhhhhhcccccCCCCCCCCCCCccCCCCCCCCCCC-ccCCCCCCCCCc
Q 005712 624 HFHVLFILLLICILFCLDNVGACSNHYSDDYHVPNYGAHPPYPP-YYGDDRLYGGGY 679 (681)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 679 (681)
.|.|..++.||-|-+|-=-.-| .+||+|+|++.-+|-- ||.+-.-|+++|
T Consensus 3 n~Si~VLlaLvLIg~fAVqSda------g~~y~p~y~~~~~y~gg~YngYngY~~~Y 53 (71)
T PF04202_consen 3 NLSIAVLLALVLIGSFAVQSDA------GYYYYPGYNAPRRYNGGYYNGYNGYPRRY 53 (71)
T ss_pred chhHHHHHHHHHHhhheeeecC------ccccCCCCCCCcccCCcccccccCcCccc
Confidence 4555555555555554333223 4789999998755544 555655565554
No 222
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=72.45 E-value=17 Score=42.14 Aligned_cols=13 Identities=23% Similarity=0.294 Sum_probs=7.7
Q ss_pred cchhHHHHHHHhc
Q 005712 200 ANKEHAKRALTEM 212 (681)
Q Consensus 200 ~~~e~A~~Al~~l 212 (681)
.....+.+||+++
T Consensus 207 k~~~eiIrClka~ 219 (1102)
T KOG1924|consen 207 KNLQEIIRCLKAF 219 (1102)
T ss_pred HHHHHHHHHHHHH
Confidence 3445666777664
No 223
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=71.29 E-value=4.6 Score=34.11 Aligned_cols=72 Identities=22% Similarity=0.195 Sum_probs=42.8
Q ss_pred EEEEeCCHHHHHHHHHHhCCCCeeeCCCCccceecccCCCCCC--ChhhcccceeeeecCCCCCCCHHHHHhhhc
Q 005712 278 AFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREP--DPEIMAHVKTVFLDGVPPHWKENQIRDQIK 350 (681)
Q Consensus 278 aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr~l~v~~a~~~~~~--~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~ 350 (681)
|.|+|....-|...++ +....+.++.....+++....-..-. .-......++|.|.|||....++.|++..+
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 5789999998888876 33344433322222322222111111 111233467899999999999999988654
No 224
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=70.36 E-value=3.7 Score=45.21 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=14.2
Q ss_pred CEEEEcCCCccCCHHHHHHHH
Q 005712 151 HEIFIGGLDRDATQEDVRKVF 171 (681)
Q Consensus 151 ~tVfV~NLp~~~teedL~~~F 171 (681)
++-.|+.||--++.++-..++
T Consensus 799 rk~~lk~lpvfa~ad~ya~~l 819 (821)
T COG5593 799 RKNMLKSLPVFASADDYAQYL 819 (821)
T ss_pred HHHHHhcCCcccchHHHHHHh
Confidence 345678888777777766554
No 225
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=70.06 E-value=13 Score=29.54 Aligned_cols=53 Identities=21% Similarity=0.356 Sum_probs=40.7
Q ss_pred cCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeecccc
Q 005712 161 DATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRC 222 (681)
Q Consensus 161 ~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i 222 (681)
.++-++|+..+..|+- .+|..+ .| | =||.|.+.++|++|....++..+....|
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d-~t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m 63 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDD-RT----G-FYIVFNDSKEAERCFRAEDGTLFFTYRM 63 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEec-CC----E-EEEEECChHHHHHHHHhcCCCEEEEEEE
Confidence 5788899999999873 234344 22 3 4899999999999999999888766544
No 226
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=70.01 E-value=2.2 Score=49.43 Aligned_cols=55 Identities=18% Similarity=0.228 Sum_probs=46.3
Q ss_pred CCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCee
Q 005712 157 GLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI 217 (681)
Q Consensus 157 NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l 217 (681)
|.+-..|-..|..+|++||.|.+++..++ ...|.|+|.+.+.|..|+++|+|+.+
T Consensus 305 nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkev 359 (1007)
T KOG4574|consen 305 NNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEV 359 (1007)
T ss_pred cccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcc
Confidence 33445677779999999999999998876 34799999999999999999988754
No 227
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=67.05 E-value=3.1 Score=35.18 Aligned_cols=58 Identities=22% Similarity=0.345 Sum_probs=40.6
Q ss_pred EEEEecchhHHHHHHHhcCCC-eeeccccC---------------CCCCCCCCcceeccccCcccHHHHHHHHh
Q 005712 195 AFVKFANKEHAKRALTEMKNP-VICGKRCG---------------TAPSEDNDTLFVGNICNTWTKEAIKQKLK 252 (681)
Q Consensus 195 aFVeF~~~e~A~~Al~~l~g~-~l~Gr~i~---------------v~~~~~~~~L~VgnLp~~~te~~L~~~F~ 252 (681)
|.|+|.+...|++.++.-... .+.+..+. +......++|.|.|||..+.++.|++.++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 689999999999999753221 12222222 22334568999999999999999987654
No 228
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=66.71 E-value=4.1 Score=47.30 Aligned_cols=71 Identities=21% Similarity=0.360 Sum_probs=56.9
Q ss_pred eeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec--CCeeEEEEEe
Q 005712 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS--DGNSKVKLRA 406 (681)
Q Consensus 330 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~--g~~i~v~~~~ 406 (681)
+..+.|.+-..+..-|..+|.+||.|..++.+++.. .|.|+|.+.+.|..|+.+|+|+++- |-..+|.+++
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 445566666788889999999999999999988743 5999999999999999999998754 4555555443
No 229
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=66.04 E-value=4.7 Score=48.39 Aligned_cols=11 Identities=45% Similarity=0.803 Sum_probs=5.6
Q ss_pred ccccccCCCCC
Q 005712 573 RSFHVMDHEPD 583 (681)
Q Consensus 573 ~~~~~~~~~~~ 583 (681)
|-|+.-|--|+
T Consensus 2317 Rdf~~~d~qPd 2327 (3015)
T KOG0943|consen 2317 RDFKEGDEQPD 2327 (3015)
T ss_pred hhhhhcccCCC
Confidence 55555554443
No 230
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=64.61 E-value=24 Score=37.70 Aligned_cols=39 Identities=18% Similarity=0.365 Sum_probs=31.9
Q ss_pred cCCCCEEEEcCCCcc-CCHHHHHHHHhhc----CCeEEEEEeec
Q 005712 147 IKKEHEIFIGGLDRD-ATQEDVRKVFERI----GEVIEVRLHKN 185 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~-~teedL~~~F~~~----G~V~~v~i~~d 185 (681)
-..+.+|-|-||.++ +.-.+|...|+.| |+|..|.|+..
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 457789999999986 6778999999876 57888888754
No 231
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=64.32 E-value=8 Score=46.55 Aligned_cols=11 Identities=18% Similarity=0.190 Sum_probs=5.2
Q ss_pred cCCHHHHHHHH
Q 005712 161 DATQEDVRKVF 171 (681)
Q Consensus 161 ~~teedL~~~F 171 (681)
++++++...+=
T Consensus 728 ~mdDe~m~~lD 738 (784)
T PF04931_consen 728 DMDDEQMMALD 738 (784)
T ss_pred ccCHHHHHHHH
Confidence 44555544443
No 232
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=63.51 E-value=12 Score=38.51 Aligned_cols=64 Identities=17% Similarity=0.235 Sum_probs=48.1
Q ss_pred ceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCe
Q 005712 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN 399 (681)
Q Consensus 328 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~ 399 (681)
..-|.|-++|... ..-|..+|++||.|....... .-.+-.|.|.+.-+|.+|| ..||+.|+|..
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~------ngNwMhirYssr~~A~KAL-skng~ii~g~v 260 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPS------NGNWMHIRYSSRTHAQKAL-SKNGTIIDGDV 260 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCeeeeeecCC------CCceEEEEecchhHHHHhh-hhcCeeeccce
Confidence 3456677777653 356788999999988775542 2237899999999999999 55998888764
No 233
>PF12782 Innate_immun: Invertebrate innate immunity transcript family
Probab=63.16 E-value=1.5e+02 Score=28.85 Aligned_cols=8 Identities=38% Similarity=0.546 Sum_probs=4.9
Q ss_pred cccchhhh
Q 005712 610 GMQCFAFV 617 (681)
Q Consensus 610 ~~~~~~~~ 617 (681)
-|.||+|-
T Consensus 235 e~Rpfrfn 242 (311)
T PF12782_consen 235 EMRPFRFN 242 (311)
T ss_pred cCCccccc
Confidence 45667664
No 234
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=63.10 E-value=1e+02 Score=35.92 Aligned_cols=19 Identities=26% Similarity=0.520 Sum_probs=9.5
Q ss_pred ccccccccCCCC---CCCCCCC
Q 005712 571 VKRSFHVMDHEP---DYMGPRR 589 (681)
Q Consensus 571 ~~~~~~~~~~~~---~~~~~~~ 589 (681)
-||.--|-..+| -+++||+
T Consensus 146 KKRlrKiG~tePcrgs~i~Ppk 167 (828)
T PF04094_consen 146 KKRLRKIGQTEPCRGSFIEPPK 167 (828)
T ss_pred cchhhhhcCCCCCCCCcCCCCC
Confidence 344445555555 3466644
No 235
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=62.44 E-value=18 Score=34.58 Aligned_cols=11 Identities=9% Similarity=0.329 Sum_probs=5.3
Q ss_pred cccCcEEEEEE
Q 005712 350 KGYGDVIRIVL 360 (681)
Q Consensus 350 ~~~G~v~~v~i 360 (681)
+-||.|.++.+
T Consensus 96 EIfG~i~d~~f 106 (215)
T KOG3262|consen 96 EIFGPINDVHF 106 (215)
T ss_pred hhcccccccEE
Confidence 33455554444
No 236
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=61.58 E-value=1.7e+02 Score=34.09 Aligned_cols=16 Identities=6% Similarity=0.206 Sum_probs=9.3
Q ss_pred CCCCCCHHHHHhhhcc
Q 005712 336 VPPHWKENQIRDQIKG 351 (681)
Q Consensus 336 Lp~~~t~~~L~~~F~~ 351 (681)
.-|+|.++|.|-+...
T Consensus 7 ~rWDW~~ED~K~VvqR 22 (828)
T PF04094_consen 7 ERWDWGPEDFKMVVQR 22 (828)
T ss_pred CcCCCCHHHHHHHHHH
Confidence 3456666666665544
No 237
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=60.45 E-value=18 Score=29.33 Aligned_cols=57 Identities=18% Similarity=0.330 Sum_probs=34.5
Q ss_pred cCCHHHHHHHHhhcC-----CeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 161 DATQEDVRKVFERIG-----EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 161 ~~teedL~~~F~~~G-----~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
.++..+|..++..-+ .|-.|+|..+ |+||+-... .|..++..|++..+.|+++.+..
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEE
Confidence 578888888887754 3667777543 889987654 78889999999999999987754
No 238
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=58.42 E-value=2.3 Score=46.95 Aligned_cols=73 Identities=11% Similarity=0.162 Sum_probs=56.0
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeecc
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGK 220 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr 220 (681)
...++|||+|+++.++-.+|..+++.+--+..+-+.....-.....+.+|+|.-.-...-|+.+||+.-|...
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 4678999999999999999999999876555555544333345667899999988888888888887655433
No 239
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=55.28 E-value=4.7 Score=46.50 Aligned_cols=15 Identities=20% Similarity=0.009 Sum_probs=6.9
Q ss_pred EEEEcCCCccCCHHH
Q 005712 152 EIFIGGLDRDATQED 166 (681)
Q Consensus 152 tVfV~NLp~~~teed 166 (681)
..-++.+|--++-++
T Consensus 957 ~k~~~d~pvFAsaee 971 (988)
T KOG2038|consen 957 EKGLNDSPVFASAEE 971 (988)
T ss_pred hhccccchhhhhHHH
Confidence 344555663333333
No 240
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=53.97 E-value=1.1e+02 Score=34.10 Aligned_cols=9 Identities=22% Similarity=0.191 Sum_probs=3.9
Q ss_pred eeeecCCCC
Q 005712 330 TVFLDGVPP 338 (681)
Q Consensus 330 ~l~V~nLp~ 338 (681)
.|+.-++|.
T Consensus 316 ~VI~~~~P~ 324 (456)
T PRK10590 316 HVVNYELPN 324 (456)
T ss_pred EEEEeCCCC
Confidence 344444443
No 241
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=52.25 E-value=4.7 Score=45.75 Aligned_cols=9 Identities=22% Similarity=0.346 Sum_probs=3.6
Q ss_pred cchhHHHHH
Q 005712 200 ANKEHAKRA 208 (681)
Q Consensus 200 ~~~e~A~~A 208 (681)
.+.+...+.
T Consensus 237 sD~e~Idrl 245 (556)
T PF05918_consen 237 SDPESIDRL 245 (556)
T ss_dssp SSHHHHHHH
T ss_pred cCHHHHHHH
Confidence 334444433
No 242
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=47.70 E-value=13 Score=45.32 Aligned_cols=9 Identities=33% Similarity=0.719 Sum_probs=3.4
Q ss_pred HHhhhcccC
Q 005712 345 IRDQIKGYG 353 (681)
Q Consensus 345 L~~~F~~~G 353 (681)
|...|..||
T Consensus 1542 v~~VF~vYG 1550 (1640)
T KOG0262|consen 1542 VNNVFKVYG 1550 (1640)
T ss_pred HHHhhhhee
Confidence 333333333
No 243
>COG4907 Predicted membrane protein [Function unknown]
Probab=45.69 E-value=37 Score=37.11 Aligned_cols=20 Identities=20% Similarity=0.426 Sum_probs=11.7
Q ss_pred CcccEEEEEeCCHHHHHHHH
Q 005712 273 LSRGFAFVMFSCHVDAMAAY 292 (681)
Q Consensus 273 ~skG~aFV~F~s~e~A~~Al 292 (681)
+++|.-++..-+...-..|+
T Consensus 415 r~rG~ky~~~~~vatii~a~ 434 (595)
T COG4907 415 RKRGLKYEHIGCVATIIFAL 434 (595)
T ss_pred HhcCCEEEEehhHHHHHHHH
Confidence 34566666666666555553
No 244
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=44.67 E-value=3.9e+02 Score=27.90 Aligned_cols=157 Identities=13% Similarity=0.216 Sum_probs=91.3
Q ss_pred CCcceeccccCcccHHHHHHHHhhcCccceEEeeecccc------ccCCCcccEEEEEeCCHHHHHHHH----HHhCCCC
Q 005712 230 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDI------QHEGLSRGFAFVMFSCHVDAMAAY----KRLQKPD 299 (681)
Q Consensus 230 ~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~------~~tg~skG~aFV~F~s~e~A~~Al----~~l~g~~ 299 (681)
.+.|...|+..+++-..+...|-++|+ |+.|.++.+. ...........+.|-+.+.+.... +.|+.-.
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~p--IESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGP--IESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCc--eeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999999999999 9999999874 112233456788898888776543 2222111
Q ss_pred eeeCCCCccceecccCCCCCC-----C----h------------hhcccceeeeecCCCCCCCHHHH-Hh---hhcccC-
Q 005712 300 VVFGHPERTVKVAFAEPLREP-----D----P------------EIMAHVKTVFLDGVPPHWKENQI-RD---QIKGYG- 353 (681)
Q Consensus 300 ~~~g~~gr~l~v~~a~~~~~~-----~----~------------~~~~~~~~l~V~nLp~~~t~~~L-~~---~F~~~G- 353 (681)
..+ ....|++.+..-.... . - .....++.|.|. +...+..++| .+ +...-+
T Consensus 93 ~~L--~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~~~n 169 (309)
T PF10567_consen 93 TKL--KSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKNSNN 169 (309)
T ss_pred Hhc--CCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhccCCC
Confidence 101 2344555544311000 0 0 001123445544 2233433332 22 222223
Q ss_pred ---cEEEEEEeecCCC--CCcceEEEEEeCCHHHHHHHHHHhC
Q 005712 354 ---DVIRIVLARNMST--AKRKDYGFIDFSTHEAAVACINAIN 391 (681)
Q Consensus 354 ---~v~~v~i~~d~~~--g~~rG~aFV~F~~~~~A~~Ai~~ln 391 (681)
.|+.|.|+..... .-+.-||.++|-+..-|...+.-|.
T Consensus 170 ~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 170 KRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred ceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 4677777654322 2356799999999988888877665
No 245
>KOG2147 consensus Nucleolar protein involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=41.63 E-value=39 Score=39.27 Aligned_cols=18 Identities=17% Similarity=0.290 Sum_probs=12.4
Q ss_pred CCcc----CCHHHHHHHHhhcC
Q 005712 158 LDRD----ATQEDVRKVFERIG 175 (681)
Q Consensus 158 Lp~~----~teedL~~~F~~~G 175 (681)
||+. .+-++|.++.+++-
T Consensus 388 lpfti~~Pk~yeef~~Ll~k~s 409 (823)
T KOG2147|consen 388 LPFTIECPKNYEEFLALLEKLS 409 (823)
T ss_pred CCeeecCCcCHHHHHHHHHccC
Confidence 6664 36678888887654
No 246
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=40.84 E-value=15 Score=42.38 Aligned_cols=13 Identities=8% Similarity=0.110 Sum_probs=7.7
Q ss_pred CCCCCCHHHHHhh
Q 005712 336 VPPHWKENQIRDQ 348 (681)
Q Consensus 336 Lp~~~t~~~L~~~ 348 (681)
+|..+|+++|...
T Consensus 552 ~~l~vTledll~a 564 (822)
T KOG2141|consen 552 LPLSVTLEDLLHA 564 (822)
T ss_pred ccccccHHHhhCh
Confidence 4555667766653
No 247
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=40.76 E-value=60 Score=33.24 Aligned_cols=48 Identities=19% Similarity=0.351 Sum_probs=35.5
Q ss_pred EEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhH
Q 005712 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEH 204 (681)
Q Consensus 152 tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~ 204 (681)
-|+|+|||.++--.||+..+.+-+-+ -+.|... -..|-||+.|.+...
T Consensus 332 di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswk----g~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 332 DIKLTNLSRDIRVKDLKSELRKRECT-PMSISWK----GHFGKCFLHFGNRKG 379 (396)
T ss_pred ceeeccCccccchHHHHHHHHhcCCC-ceeEeee----cCCcceeEecCCccC
Confidence 49999999999999999999887633 2333322 346789999976543
No 248
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=40.53 E-value=90 Score=29.98 Aligned_cols=7 Identities=0% Similarity=-0.054 Sum_probs=2.9
Q ss_pred hhhcccC
Q 005712 347 DQIKGYG 353 (681)
Q Consensus 347 ~~F~~~G 353 (681)
++|....
T Consensus 96 EIfG~i~ 102 (215)
T KOG3262|consen 96 EIFGPIN 102 (215)
T ss_pred hhccccc
Confidence 4444443
No 249
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=39.70 E-value=48 Score=38.77 Aligned_cols=10 Identities=20% Similarity=0.145 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 005712 285 HVDAMAAYKR 294 (681)
Q Consensus 285 ~e~A~~Al~~ 294 (681)
..++..|+.+
T Consensus 401 A~D~v~al~A 410 (622)
T PF02724_consen 401 ASDVVYALTA 410 (622)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 250
>PF09073 BUD22: BUD22; InterPro: IPR015158 BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal [].
Probab=39.42 E-value=21 Score=39.74 Aligned_cols=22 Identities=14% Similarity=0.081 Sum_probs=13.0
Q ss_pred CHHHHHHHHHHhCCceecCCee
Q 005712 379 THEAAVACINAINNKEFSDGNS 400 (681)
Q Consensus 379 ~~~~A~~Ai~~lng~~~~g~~i 400 (681)
+-+++.+|-+.+....|.|+.|
T Consensus 408 SWeAkkk~Ke~~~~a~FqGKKI 429 (432)
T PF09073_consen 408 SWEAKKKAKEKQKIAKFQGKKI 429 (432)
T ss_pred cHHHHHHHHHHhccCCCCCCcc
Confidence 3455566666665666666654
No 251
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=38.46 E-value=18 Score=38.62 Aligned_cols=6 Identities=50% Similarity=0.562 Sum_probs=2.6
Q ss_pred CHHHHH
Q 005712 163 TQEDVR 168 (681)
Q Consensus 163 teedL~ 168 (681)
|.+|+.
T Consensus 191 T~eDF~ 196 (324)
T PF05285_consen 191 TPEDFA 196 (324)
T ss_pred CHHHHH
Confidence 444433
No 252
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=37.92 E-value=52 Score=33.43 Aligned_cols=87 Identities=16% Similarity=0.287 Sum_probs=52.9
Q ss_pred cEEEEEeCCHHH----HHHHHHHhCCCCeeeCCCCccceecccCCCCC-----------------CChhhcccceeeeec
Q 005712 276 GFAFVMFSCHVD----AMAAYKRLQKPDVVFGHPERTVKVAFAEPLRE-----------------PDPEIMAHVKTVFLD 334 (681)
Q Consensus 276 G~aFV~F~s~e~----A~~Al~~l~g~~~~~g~~gr~l~v~~a~~~~~-----------------~~~~~~~~~~~l~V~ 334 (681)
..-||.|...-. ..+.++.|++..+.+..-...|+|..+..+.. ....+.....+|++.
T Consensus 76 nid~iifeael~n~gimkk~l~~ldgfsiklsgfad~lkvka~eakidfpsrhdwdd~fm~~kdmdemkpgerpdti~la 155 (445)
T KOG2891|consen 76 NIDFIIFEAELENKGIMKKFLACLDGFSIKLSGFADILKVKAAEAKIDFPSRHDWDDFFMDAKDMDEMKPGERPDTIHLA 155 (445)
T ss_pred ccceEEeeHhhhhhhHHHHHHHHhcCCeeeecccchHHhhhHHhhcCCCCcccchHHHHhhhhhhhccCCCCCCCceeec
Confidence 356777764433 34555567776665544444555544432211 111223445688888
Q ss_pred CCCCC------------CCHHHHHhhhcccCcEEEEEEee
Q 005712 335 GVPPH------------WKENQIRDQIKGYGDVIRIVLAR 362 (681)
Q Consensus 335 nLp~~------------~t~~~L~~~F~~~G~v~~v~i~~ 362 (681)
+||-. .+++-|+..|..||.|..|.|+.
T Consensus 156 ~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 156 GIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 88742 35678999999999999998853
No 253
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=37.18 E-value=42 Score=34.72 Aligned_cols=59 Identities=12% Similarity=0.270 Sum_probs=48.1
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecC-------CCCCccceEEEEecchhHHHH
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNF-------STNRNKGYAFVKFANKEHAKR 207 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~-------~tg~skG~aFVeF~~~e~A~~ 207 (681)
..+.|...||..+++-..+...|.+||+|++|.++.+. ..-.......+.|-+.+.+..
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLd 79 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLD 79 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHH
Confidence 45788899999999999999999999999999999764 112334578899999988754
No 254
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=36.08 E-value=81 Score=37.00 Aligned_cols=11 Identities=18% Similarity=0.138 Sum_probs=5.5
Q ss_pred CHHHHHHHHHH
Q 005712 379 THEAAVACINA 389 (681)
Q Consensus 379 ~~~~A~~Ai~~ 389 (681)
++.+..-||..
T Consensus 500 ~~~~~~~~i~~ 510 (629)
T PRK11634 500 EVRHIVGAIAN 510 (629)
T ss_pred CHHHHHHHHHh
Confidence 34555555543
No 255
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=36.00 E-value=52 Score=33.70 Aligned_cols=47 Identities=9% Similarity=0.189 Sum_probs=35.9
Q ss_pred ceeeeecCCCCCCCHHHHHhhhcccCcE-EEEEEeecCCCCCcceEEEEEeCCH
Q 005712 328 VKTVFLDGVPPHWKENQIRDQIKGYGDV-IRIVLARNMSTAKRKDYGFIDFSTH 380 (681)
Q Consensus 328 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v-~~v~i~~d~~~g~~rG~aFV~F~~~ 380 (681)
..-|+|+||+.++...||+..+.+-+-+ ..|.+ ..++|-||+.|-+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCc
Confidence 3569999999999999999999887643 33333 23577899999764
No 256
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=35.69 E-value=48 Score=26.55 Aligned_cols=61 Identities=20% Similarity=0.355 Sum_probs=44.4
Q ss_pred HHHHHHHhhcC-CeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCC
Q 005712 165 EDVRKVFERIG-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (681)
Q Consensus 165 edL~~~F~~~G-~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~ 228 (681)
++|.+-|...| +|..|.-+..+.++.....-||+.....+...++ +=..|++..|.|.+..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~---~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY---KIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee---ehHhhCCeEEEEecCC
Confidence 46788888888 7888888888777888888999988876644433 3455667766666544
No 257
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=35.48 E-value=8.9 Score=42.61 Aligned_cols=70 Identities=13% Similarity=0.183 Sum_probs=54.3
Q ss_pred ceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC
Q 005712 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397 (681)
Q Consensus 328 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g 397 (681)
.++|||+|+++.++-.+|..+|+.+--+.++.+........-.-+.+|+|.---....|+-+||+..+.-
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 5789999999999999999999998766666665443333445578999998778888888888765543
No 258
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=34.84 E-value=43 Score=38.81 Aligned_cols=26 Identities=8% Similarity=0.104 Sum_probs=14.8
Q ss_pred EEEEeCCHHHHHHHHHHhCCceecCC
Q 005712 373 GFIDFSTHEAAVACINAINNKEFSDG 398 (681)
Q Consensus 373 aFV~F~~~~~A~~Ai~~lng~~~~g~ 398 (681)
-|+.-.+.++-..|++.|=.-.+.|.
T Consensus 624 IFcsImsaeDyiDAFEklLkL~LK~~ 649 (822)
T KOG2141|consen 624 IFCSIMSAEDYIDAFEKLLKLSLKGK 649 (822)
T ss_pred heeeeecchHHHHHHHHHHhccCCCc
Confidence 45555666666666665544444444
No 259
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=33.62 E-value=1.4e+02 Score=24.99 Aligned_cols=55 Identities=24% Similarity=0.295 Sum_probs=41.5
Q ss_pred EEcCCCccCCHHHHHHHHhh-cC-CeEEEEEeecCCCCCccceEEEEecchhHHHHHHHh
Q 005712 154 FIGGLDRDATQEDVRKVFER-IG-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211 (681)
Q Consensus 154 fV~NLp~~~teedL~~~F~~-~G-~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~ 211 (681)
++=-+...++..+|++.+++ || .|..|+.+.-+ ...--|||.+.....|......
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~---~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP---KGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCcEEEEEEeCCCCcHHHHHHh
Confidence 44446789999999999998 67 67888876543 2334699999999988877654
No 260
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=33.19 E-value=46 Score=29.74 Aligned_cols=50 Identities=6% Similarity=0.213 Sum_probs=27.2
Q ss_pred eeeeecCCCCC---------CCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHH
Q 005712 329 KTVFLDGVPPH---------WKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381 (681)
Q Consensus 329 ~~l~V~nLp~~---------~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~ 381 (681)
.++.|-|++.. .+-+.|++.|+.|..++ |+.+.+. ..++|+++|+|.+--
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDW 67 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCCh
Confidence 35566666553 34578999999998775 5555553 357899999998643
No 261
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=32.93 E-value=31 Score=37.78 Aligned_cols=19 Identities=16% Similarity=0.302 Sum_probs=10.3
Q ss_pred CCCCEEEEcCCCccCCHHH
Q 005712 148 KKEHEIFIGGLDRDATQED 166 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teed 166 (681)
....+||-+-....+.-++
T Consensus 314 ~~dYkvftr~fDe~v~aee 332 (620)
T COG4547 314 EVDYKVFTREFDEIVLAEE 332 (620)
T ss_pred cccccccchhhhhhhhHHH
Confidence 3456677666655444333
No 262
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=31.75 E-value=64 Score=25.93 Aligned_cols=61 Identities=15% Similarity=0.212 Sum_probs=43.9
Q ss_pred HHHHHHHhhcC-CeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCC
Q 005712 165 EDVRKVFERIG-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (681)
Q Consensus 165 edL~~~F~~~G-~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~ 228 (681)
++|++-|+..| +|..|+-+..+.++.+...-+|+.....+... .++=+.|++.++.|....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46888888888 78999998888777777888888877654443 234456777776665543
No 263
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=31.10 E-value=1.3e+02 Score=33.52 Aligned_cols=6 Identities=0% Similarity=-0.097 Sum_probs=2.8
Q ss_pred ceEEEE
Q 005712 370 KDYGFI 375 (681)
Q Consensus 370 rG~aFV 375 (681)
.|.|++
T Consensus 342 ~G~ai~ 347 (456)
T PRK10590 342 TGEALS 347 (456)
T ss_pred CeeEEE
Confidence 455543
No 264
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=30.48 E-value=39 Score=32.43 Aligned_cols=71 Identities=14% Similarity=0.129 Sum_probs=48.2
Q ss_pred eeeeecCCCCCCC-----HHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCC-eeEE
Q 005712 329 KTVFLDGVPPHWK-----ENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG-NSKV 402 (681)
Q Consensus 329 ~~l~V~nLp~~~t-----~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~-~i~v 402 (681)
+.+.+.+|+..+- ......+|.++-......+++ +.++.-|-|.+++.|..|...++.+.|.|+ .+++
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 4556666665432 234456666666555444443 345677899999999999999999999998 5555
Q ss_pred EEE
Q 005712 403 KLR 405 (681)
Q Consensus 403 ~~~ 405 (681)
-++
T Consensus 85 yfa 87 (193)
T KOG4019|consen 85 YFA 87 (193)
T ss_pred EEc
Confidence 543
No 265
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=30.38 E-value=60 Score=29.00 Aligned_cols=51 Identities=14% Similarity=0.203 Sum_probs=29.1
Q ss_pred EEEEcCCCccC---------CHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHH
Q 005712 152 EIFIGGLDRDA---------TQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHA 205 (681)
Q Consensus 152 tVfV~NLp~~~---------teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A 205 (681)
++.|-|++... +-+.|++.|+.|..+. |+.+.+.. -..|++.|+|.+.-..
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~G 69 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSG 69 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHH
Confidence 56777886543 4578999999998875 55555532 5689999999876554
No 266
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=29.92 E-value=62 Score=34.23 Aligned_cols=57 Identities=18% Similarity=0.296 Sum_probs=42.8
Q ss_pred EEEEecchhHHHHHHHhcCCCeeeccccCCCCCCCCCcceeccccCcccHHHHHHHHhh
Q 005712 195 AFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKD 253 (681)
Q Consensus 195 aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~~~~~L~VgnLp~~~te~~L~~~F~~ 253 (681)
|||+|.+..+|+.|++.+.... ...+.+..+.+.+.+.=.||.....+..++..+..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~DI~W~NL~~~~~~r~~R~~~~~ 57 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDDIIWENLSISSKQRFLRRIIVN 57 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcccccccccCCChHHHHHHHHHHH
Confidence 7999999999999998654332 35567777777888888888777666666665544
No 267
>PF01524 Gemini_V1: Geminivirus V1 protein; InterPro: IPR002511 Disruption of the V1 gene in Tomato yellow leaf curl virus (TYLCV) stopped its ability to systemically infect Solanum lycopersicum (Tomato) (Lycopersicon esculentum) plants, suggesting that the V1 gene product is required for successful infection of the host [].; GO: 0019048 virus-host interaction, 0060967 negative regulation of gene silencing by RNA, 0030430 host cell cytoplasm
Probab=29.39 E-value=15 Score=29.86 Aligned_cols=49 Identities=27% Similarity=0.408 Sum_probs=33.5
Q ss_pred CCCCCCcccccchhhhh-------hhhccchhHHHHHHHhhhhhcccccCCCCCCCCC
Q 005712 602 PFHGSHHHGMQCFAFVD-------FFRQAHFHVLFILLLICILFCLDNVGACSNHYSD 652 (681)
Q Consensus 602 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (681)
+|..|- ||+.|---|. -|..+..---.|.-|||||+|++.+.| +..|++
T Consensus 8 efP~tv-HGfRCMLAiKYlq~~~~~Y~p~tlG~dlirdLI~vlR~rnY~eA-~~RY~~ 63 (78)
T PF01524_consen 8 EFPETV-HGFRCMLAIKYLQLVEKTYSPDTLGYDLIRDLISVLRARNYVEA-SRRYSH 63 (78)
T ss_pred cCCccc-cchhHHHHHHHHHHcccccCCCCccHHHHHHHHHHHhhhhHHHH-HHHHHH
Confidence 344433 5677754443 455566666678889999999999999 555654
No 268
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=27.97 E-value=66 Score=30.81 Aligned_cols=56 Identities=20% Similarity=0.255 Sum_probs=38.8
Q ss_pred CEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCC--CccceEEEEecchhHHHHHHHh
Q 005712 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTN--RNKGYAFVKFANKEHAKRALTE 211 (681)
Q Consensus 151 ~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg--~skG~aFVeF~~~e~A~~Al~~ 211 (681)
++++.. +.+...++|..+-+ |++..|.+-+. ..+ ..+|..||+|.+.+.|.++++.
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~-~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRH-GNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeecccc-CCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 456666 44455555555555 77887776443 222 5789999999999999998875
No 269
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=27.36 E-value=70 Score=37.43 Aligned_cols=13 Identities=31% Similarity=0.048 Sum_probs=5.9
Q ss_pred eCCHHHHHHHHHH
Q 005712 282 FSCHVDAMAAYKR 294 (681)
Q Consensus 282 F~s~e~A~~Al~~ 294 (681)
-.+...|..|+-.
T Consensus 401 A~D~v~al~ALLE 413 (622)
T PF02724_consen 401 ASDVVYALTALLE 413 (622)
T ss_pred HHHHHHHHHHHhc
Confidence 3444444444443
No 270
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=27.31 E-value=36 Score=28.67 Aligned_cols=21 Identities=38% Similarity=0.776 Sum_probs=14.0
Q ss_pred hhhhhhhhcc-----chhHHHHHHHh
Q 005712 614 FAFVDFFRQA-----HFHVLFILLLI 634 (681)
Q Consensus 614 ~~~~~~~~~~-----~~~~~~~~~~~ 634 (681)
||||||+.+. .+..+-|.|||
T Consensus 28 fAfidfsK~~~~~~~~wRalSii~FI 53 (92)
T PF05767_consen 28 FAFIDFSKNTKPTDYTWRALSIICFI 53 (92)
T ss_pred HHhhhhccCCCCchhHHHHHHHHHHH
Confidence 8999999987 34444444443
No 271
>KOG4434 consensus Molecular chaperone SEC63, endoplasmic reticulum translocon component [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=27.07 E-value=1.2e+02 Score=32.31 Aligned_cols=16 Identities=31% Similarity=0.337 Sum_probs=7.6
Q ss_pred chhhhccccCccccCC
Q 005712 7 SEDKVSNYDNKERLGD 22 (681)
Q Consensus 7 s~~~~~~~n~~~~~~r 22 (681)
.++.....||.+..|.
T Consensus 262 aedG~~de~n~ea~g~ 277 (520)
T KOG4434|consen 262 AEDGGDDENNLEASGA 277 (520)
T ss_pred hhhCCCcccchhccCC
Confidence 3444444555554444
No 272
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.46 E-value=98 Score=33.34 Aligned_cols=62 Identities=11% Similarity=0.211 Sum_probs=46.3
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcE-EEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDV-IRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 396 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v-~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~ 396 (681)
-.+.|-|.++|...-.+||...|..|+.- -.|.++.+. .||-.|.+...|..|| .|...++.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaL-t~kh~~lK 452 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEAL-TLKHDWLK 452 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHh-hccCceEE
Confidence 35789999999999999999999988642 234455443 6999999999999998 34443433
No 273
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=26.13 E-value=35 Score=43.81 Aligned_cols=22 Identities=5% Similarity=0.120 Sum_probs=15.0
Q ss_pred ceEEEEEeCCHHHHHHHHHHhC
Q 005712 370 KDYGFIDFSTHEAAVACINAIN 391 (681)
Q Consensus 370 rG~aFV~F~~~~~A~~Ai~~ln 391 (681)
.|...+-|++..-+.+|+..|.
T Consensus 4408 s~~~~la~etl~lvtkals~le 4429 (4600)
T COG5271 4408 SGSTVLALETLALVTKALSLLE 4429 (4600)
T ss_pred cCceeeehHHHHHHHHHHHHHh
Confidence 3556677777777777776654
No 274
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=25.87 E-value=71 Score=29.45 Aligned_cols=97 Identities=10% Similarity=0.050 Sum_probs=63.4
Q ss_pred cCCHHHHHHHHhh-cCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCCC----------
Q 005712 161 DATQEDVRKVFER-IGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED---------- 229 (681)
Q Consensus 161 ~~teedL~~~F~~-~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~~---------- 229 (681)
..+-..|...+.+ ++....+.+.. ...++..++|.+.+++.+++.. ....+.+..+.+..-.+
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~-----l~~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~~~~~~~~~~~~ 101 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRD-----LGDNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWSPDFNPSEVKFE 101 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEE-----eCCCeEEEEEEeccceeEEEec-ccccccccchhhhhhccccccccccee
Confidence 3566667776665 34333444432 1357899999999999999973 44455666555543321
Q ss_pred --CCcceeccccCc-ccHHHHHHHHhhcCccceEEeeec
Q 005712 230 --NDTLFVGNICNT-WTKEAIKQKLKDYGVEGVENINLV 265 (681)
Q Consensus 230 --~~~L~VgnLp~~-~te~~L~~~F~~~G~~~v~~i~i~ 265 (681)
.-=|.|.+||.. .+++-++.+.+..|. +..+...
T Consensus 102 ~~~vWVri~glP~~~~~~~~~~~i~~~iG~--~i~vD~~ 138 (153)
T PF14111_consen 102 HIPVWVRIYGLPLHLWSEEILKAIGSKIGE--PIEVDEN 138 (153)
T ss_pred ccchhhhhccCCHHHhhhHHHHHHHHhcCC--eEEEEcC
Confidence 112567899987 677889999999997 6666543
No 275
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=24.95 E-value=2.7e+02 Score=22.89 Aligned_cols=56 Identities=25% Similarity=0.299 Sum_probs=41.1
Q ss_pred EEEcCCCccCCHHHHHHHHhh-cC-CeEEEEEeecCCCCCccceEEEEecchhHHHHHHHh
Q 005712 153 IFIGGLDRDATQEDVRKVFER-IG-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211 (681)
Q Consensus 153 VfV~NLp~~~teedL~~~F~~-~G-~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~ 211 (681)
-++=.+..+++..+|++.+++ |+ .|..|..+.-+ ...--|||.+.....|...-..
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~---~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP---RGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCceEEEEEECCCCcHHHHHHh
Confidence 455567889999999999988 66 57777776542 2334599999988888765543
No 276
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=24.14 E-value=1.5e+02 Score=23.28 Aligned_cols=36 Identities=17% Similarity=0.416 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecc
Q 005712 165 EDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFAN 201 (681)
Q Consensus 165 edL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~ 201 (681)
.+|+++|+..|+| .|..+....+...+-.+=|.|.+
T Consensus 9 ~~iR~~fs~lG~I-~vLYvn~~eS~~~~~~GGvV~eD 44 (62)
T PF15513_consen 9 AEIRQFFSQLGEI-AVLYVNPYESDEDRLTGGVVMED 44 (62)
T ss_pred HHHHHHHHhcCcE-EEEEEcccccCCCeEeccEEEeC
No 277
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=23.60 E-value=88 Score=35.05 Aligned_cols=7 Identities=29% Similarity=0.278 Sum_probs=2.9
Q ss_pred CCCccCC
Q 005712 157 GLDRDAT 163 (681)
Q Consensus 157 NLp~~~t 163 (681)
|-|.-+|
T Consensus 534 napkra~ 540 (615)
T KOG0526|consen 534 NAPKRAT 540 (615)
T ss_pred CCCccch
Confidence 3444433
No 278
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=22.74 E-value=65 Score=32.21 Aligned_cols=37 Identities=16% Similarity=0.334 Sum_probs=30.4
Q ss_pred hccCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEE
Q 005712 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVR 181 (681)
Q Consensus 145 ~~~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~ 181 (681)
....+..+||+-|||..+|++.|..+.+++|-+..+.
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 3444678999999999999999999999998654443
No 279
>KOG2773 consensus Apoptosis antagonizing transcription factor/protein transport protein [Transcription; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.22 E-value=68 Score=35.21 Aligned_cols=10 Identities=0% Similarity=-0.027 Sum_probs=4.7
Q ss_pred ecCCeeEEEE
Q 005712 395 FSDGNSKVKL 404 (681)
Q Consensus 395 ~~g~~i~v~~ 404 (681)
-.||.|+-.|
T Consensus 444 SKgRKLrY~V 453 (483)
T KOG2773|consen 444 SKGRKLRYHV 453 (483)
T ss_pred ccCceeeeeh
Confidence 3455554443
No 280
>PF15360 Apelin: APJ endogenous ligand
Probab=22.17 E-value=54 Score=24.38 Aligned_cols=15 Identities=60% Similarity=1.147 Sum_probs=11.2
Q ss_pred CCCCCCCCCCCCCCCC
Q 005712 588 RRFRPRLDYNDPVIPF 603 (681)
Q Consensus 588 ~~~~~~~~~~~~~~~~ 603 (681)
.|-||||-+-.| .||
T Consensus 41 RRqRPRLSHKgP-MPF 55 (55)
T PF15360_consen 41 RRQRPRLSHKGP-MPF 55 (55)
T ss_pred hccCcccccCCC-CCC
Confidence 567788888887 555
No 281
>PTZ00438 gamete antigen 27/25-like protein; Provisional
Probab=21.44 E-value=37 Score=34.30 Aligned_cols=12 Identities=25% Similarity=0.501 Sum_probs=6.5
Q ss_pred EEEeCCHHHHHH
Q 005712 374 FIDFSTHEAAVA 385 (681)
Q Consensus 374 FV~F~~~~~A~~ 385 (681)
|+.|.+-+++..
T Consensus 349 FLcfsn~q~m~~ 360 (374)
T PTZ00438 349 FLCFSNCQDMII 360 (374)
T ss_pred HHhhhchHhHHH
Confidence 556666555443
No 282
>KOG3871 consensus Cell adhesion complex protein bystin [Extracellular structures]
Probab=21.18 E-value=63 Score=34.30 Aligned_cols=10 Identities=20% Similarity=0.434 Sum_probs=6.5
Q ss_pred CcceeccccC
Q 005712 231 DTLFVGNICN 240 (681)
Q Consensus 231 ~~L~VgnLp~ 240 (681)
++||++||..
T Consensus 236 TRiF~SnL~~ 245 (449)
T KOG3871|consen 236 TRIFASNLKP 245 (449)
T ss_pred HHHHHhcCCH
Confidence 5677777754
No 283
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=21.04 E-value=37 Score=36.52 Aligned_cols=63 Identities=16% Similarity=0.361 Sum_probs=52.4
Q ss_pred CCCCEEEEcCCCccCCHH--------HHHHHHhh--cCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHH
Q 005712 148 KKEHEIFIGGLDRDATQE--------DVRKVFER--IGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALT 210 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~tee--------dL~~~F~~--~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~ 210 (681)
...+.+|+.+.....+.. +|...|.. .+.+..|+.-++.....++|..|++|.....|++++.
T Consensus 172 ~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 172 QMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 345678888887765544 89999998 6788999998887677899999999999999999985
No 284
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=20.89 E-value=1.9e+02 Score=31.33 Aligned_cols=79 Identities=9% Similarity=0.172 Sum_probs=55.5
Q ss_pred ccceeeeecCCCCC-CCHHHHHhhhccc----CcEEEEEEeecCC-----------------------------------
Q 005712 326 AHVKTVFLDGVPPH-WKENQIRDQIKGY----GDVIRIVLARNMS----------------------------------- 365 (681)
Q Consensus 326 ~~~~~l~V~nLp~~-~t~~~L~~~F~~~----G~v~~v~i~~d~~----------------------------------- 365 (681)
..+++|-|-||.|. +...+|..+|+.| |.|..|.|....-
T Consensus 144 ~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn~ 223 (622)
T COG5638 144 NPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDNV 223 (622)
T ss_pred CcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCccc
Confidence 34688999999994 7778888888765 6777776643210
Q ss_pred -----CC------Ccc-------------------eEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEE
Q 005712 366 -----TA------KRK-------------------DYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (681)
Q Consensus 366 -----~g------~~r-------------------G~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (681)
.| .-+ =||.|+|++...+.....+++|.++....-.+.+
T Consensus 224 ~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DL 292 (622)
T COG5638 224 FSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDL 292 (622)
T ss_pred hhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeee
Confidence 00 011 2789999999999999999999988765443433
No 285
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=20.12 E-value=2.9e+02 Score=24.53 Aligned_cols=107 Identities=18% Similarity=0.252 Sum_probs=56.7
Q ss_pred CCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCe--eeccccCCCCCCCCCccee
Q 005712 158 LDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPV--ICGKRCGTAPSEDNDTLFV 235 (681)
Q Consensus 158 Lp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~--l~Gr~i~v~~~~~~~~L~V 235 (681)
||+-+. .|.++|+.=|+|.+|..+..-.+ . .||-.++|.. +.|. |.+........+++
T Consensus 11 lPPYTn--KLSDYfeSPGKI~svItvtqypd--------------n---dal~~~~G~lE~vDg~-i~IGs~q~~~sV~i 70 (145)
T TIGR02542 11 LPPYTN--KLSDYFESPGKIQSVITVTQYPD--------------N---DALLYVHGTLEQVDGN-IRIGSGQTPASVRI 70 (145)
T ss_pred cCCccc--hhhHHhcCCCceEEEEEEeccCC--------------c---hhhheeeeehhhccCc-EEEccCCCcccEEE
Confidence 676655 48899999999999887654111 1 1222222221 2222 33333333334444
Q ss_pred cc---------ccCcccHHHHHHHHhhcCc-cceEEeeeccccccCCCcccEEEEEeCCH
Q 005712 236 GN---------ICNTWTKEAIKQKLKDYGV-EGVENINLVSDIQHEGLSRGFAFVMFSCH 285 (681)
Q Consensus 236 gn---------Lp~~~te~~L~~~F~~~G~-~~v~~i~i~~d~~~tg~skG~aFV~F~s~ 285 (681)
.+ -|..+|-.+++++|..--. .+|+.-.+.++--..| +-..||.-|...
T Consensus 71 ~gTPsgnnv~F~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~G-sYRiCFrL~~~~ 129 (145)
T TIGR02542 71 QGTPSGNNVIFPPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEG-SYRICFRLFNAT 129 (145)
T ss_pred ecCCCCCceecCceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCC-ceEEEEEEeccc
Confidence 33 3567899999999986321 1244445555421122 233566666544
Done!