Query 005712
Match_columns 681
No_of_seqs 525 out of 3763
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 05:19:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005712.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005712hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ghp_A U4/U6 snRNA-associated 100.0 6.3E-41 2.2E-45 350.5 23.5 249 145-406 36-289 (292)
2 3smz_A Protein raver-1, ribonu 100.0 2.6E-40 8.8E-45 344.5 26.2 242 148-406 20-262 (284)
3 4f02_A Polyadenylate-binding p 100.0 1.8E-29 6.1E-34 251.5 14.9 181 148-337 13-201 (213)
4 2qfj_A FBP-interacting repress 100.0 2.1E-29 7.3E-34 250.6 14.9 179 149-408 27-205 (216)
5 1b7f_A Protein (SXL-lethal pro 100.0 1E-28 3.4E-33 235.6 18.7 164 149-404 2-167 (168)
6 1l3k_A Heterogeneous nuclear r 100.0 9.4E-29 3.2E-33 242.1 18.1 174 146-407 9-182 (196)
7 1fxl_A Paraneoplastic encephal 100.0 3.5E-28 1.2E-32 231.3 19.4 163 150-404 2-164 (167)
8 4f02_A Polyadenylate-binding p 100.0 9E-28 3.1E-32 239.1 19.0 168 227-406 12-179 (213)
9 3md3_A Nuclear and cytoplasmic 100.0 2.2E-27 7.6E-32 225.5 19.6 164 231-405 1-164 (166)
10 3nmr_A Cugbp ELAV-like family 99.9 4.1E-27 1.4E-31 225.8 16.5 162 149-315 2-175 (175)
11 2cjk_A Nuclear polyadenylated 99.9 3.7E-27 1.3E-31 224.6 15.2 159 149-317 2-166 (167)
12 3md3_A Nuclear and cytoplasmic 99.9 6.7E-27 2.3E-31 222.1 15.8 158 151-316 1-166 (166)
13 3nmr_A Cugbp ELAV-like family 99.9 4.1E-26 1.4E-30 218.8 19.0 168 229-405 2-174 (175)
14 2yh0_A Splicing factor U2AF 65 99.9 5.8E-26 2E-30 222.6 18.4 179 149-406 3-192 (198)
15 2cjk_A Nuclear polyadenylated 99.9 2.3E-26 7.9E-31 219.1 13.6 162 229-405 2-163 (167)
16 3pgw_A U1-A; protein-RNA compl 99.9 2.1E-25 7.3E-30 231.4 21.6 249 147-406 6-281 (282)
17 2g4b_A Splicing factor U2AF 65 99.9 1.5E-25 5.2E-30 214.5 16.9 160 229-405 3-171 (172)
18 3tyt_A Heterogeneous nuclear r 99.9 2.8E-25 9.5E-30 219.5 15.8 155 149-313 3-203 (205)
19 2g4b_A Splicing factor U2AF 65 99.9 3.2E-25 1.1E-29 212.2 15.2 153 148-314 2-171 (172)
20 3sde_A Paraspeckle component 1 99.9 3.7E-25 1.3E-29 227.2 14.9 162 147-318 19-180 (261)
21 1fje_B Nucleolin RBD12, protei 99.9 3.2E-25 1.1E-29 213.1 13.5 165 224-405 7-171 (175)
22 3tyt_A Heterogeneous nuclear r 99.9 7.9E-25 2.7E-29 216.2 16.7 157 229-399 3-194 (205)
23 1fje_B Nucleolin RBD12, protei 99.9 9.9E-26 3.4E-30 216.7 7.4 158 146-317 9-174 (175)
24 3smz_A Protein raver-1, ribonu 99.9 2.9E-24 1E-28 223.1 16.3 164 148-319 93-266 (284)
25 2adc_A Polypyrimidine tract-bi 99.9 7E-24 2.4E-28 213.4 18.1 154 147-317 31-228 (229)
26 2adc_A Polypyrimidine tract-bi 99.9 1.2E-23 4.2E-28 211.6 18.7 164 226-406 30-226 (229)
27 3sde_A Paraspeckle component 1 99.9 1E-23 3.4E-28 216.6 16.5 155 229-408 21-179 (261)
28 2ghp_A U4/U6 snRNA-associated 99.9 5.4E-24 1.9E-28 222.0 14.4 161 149-317 116-291 (292)
29 1qm9_A Polypyrimidine tract-bi 99.9 7.2E-24 2.4E-28 208.0 13.8 152 149-317 2-197 (198)
30 1qm9_A Polypyrimidine tract-bi 99.9 1.3E-23 4.4E-28 206.3 14.4 160 230-406 3-195 (198)
31 2kn4_A Immunoglobulin G-bindin 99.8 1.2E-19 4.2E-24 171.4 14.2 143 262-407 3-149 (158)
32 4f25_A Polyadenylate-binding p 99.8 1.2E-18 4.2E-23 155.5 8.2 96 149-246 4-113 (115)
33 3pgw_S U1-70K; protein-RNA com 99.7 2E-18 6.7E-23 189.2 8.0 81 327-407 101-181 (437)
34 4fxv_A ELAV-like protein 1; RN 99.7 5.6E-18 1.9E-22 146.9 9.0 82 148-229 17-98 (99)
35 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.4E-17 4.9E-22 156.9 12.4 81 326-406 37-117 (156)
36 4fxv_A ELAV-like protein 1; RN 99.7 1.5E-17 5E-22 144.2 10.5 79 327-405 18-96 (99)
37 2i2y_A Fusion protein consists 99.7 9.9E-18 3.4E-22 156.9 10.0 124 272-405 10-145 (150)
38 3q2s_C Cleavage and polyadenyl 99.7 5.3E-18 1.8E-22 170.0 7.6 81 327-407 67-149 (229)
39 2kn4_A Immunoglobulin G-bindin 99.7 5.9E-17 2E-21 152.9 11.3 133 179-320 2-153 (158)
40 3s8s_A Histone-lysine N-methyl 99.7 1.1E-16 3.6E-21 141.6 10.8 78 328-405 6-83 (110)
41 3s8s_A Histone-lysine N-methyl 99.7 7.6E-17 2.6E-21 142.5 9.2 81 148-228 4-84 (110)
42 2lxi_A RNA-binding protein 10; 99.7 1.8E-17 6.1E-22 141.4 4.9 81 150-230 1-83 (91)
43 2lea_A Serine/arginine-rich sp 99.7 3.8E-17 1.3E-21 150.1 6.7 121 277-407 6-126 (135)
44 2cqd_A RNA-binding region cont 99.7 2.8E-16 9.5E-21 140.2 11.8 81 326-407 15-95 (116)
45 3ex7_B RNA-binding protein 8A; 99.7 1.8E-16 6.3E-21 143.6 10.3 83 326-408 20-102 (126)
46 2lkz_A RNA-binding protein 5; 99.7 4.4E-17 1.5E-21 139.9 5.3 82 148-229 7-94 (95)
47 2lxi_A RNA-binding protein 10; 99.7 4.1E-17 1.4E-21 139.1 4.5 79 328-406 1-81 (91)
48 1whw_A Hypothetical protein ri 99.7 5.1E-16 1.7E-20 134.3 11.5 81 327-407 7-87 (99)
49 2lkz_A RNA-binding protein 5; 99.7 7.2E-17 2.5E-21 138.5 5.8 79 328-406 9-93 (95)
50 1rk8_A CG8781-PA, CG8781-PA pr 99.6 3.6E-16 1.2E-20 148.7 10.9 126 280-407 11-151 (165)
51 2cq0_A Eukaryotic translation 99.6 6E-16 2E-20 135.0 11.2 79 327-405 14-92 (103)
52 2dnz_A Probable RNA-binding pr 99.6 6.2E-16 2.1E-20 132.7 11.1 79 327-405 4-82 (95)
53 3md1_A Nuclear and cytoplasmic 99.6 6.6E-16 2.2E-20 128.9 11.0 78 329-406 2-79 (83)
54 3bs9_A Nucleolysin TIA-1 isofo 99.6 6.9E-16 2.4E-20 130.0 11.1 80 327-406 5-84 (87)
55 2dgo_A Cytotoxic granule-assoc 99.6 1.8E-15 6.3E-20 134.6 14.1 81 327-407 14-94 (115)
56 3lqv_A PRE-mRNA branch site pr 99.6 1.9E-16 6.7E-21 141.0 7.8 104 148-256 6-109 (115)
57 2dgs_A DAZ-associated protein 99.6 9.5E-16 3.2E-20 132.7 11.7 79 327-406 9-87 (99)
58 3p5t_L Cleavage and polyadenyl 99.6 1.3E-16 4.4E-21 135.7 6.1 79 151-229 2-82 (90)
59 2x1f_A MRNA 3'-END-processing 99.6 2.9E-16 1E-20 135.1 8.1 86 149-234 1-86 (96)
60 1u6f_A Tcubp1, RNA-binding pro 99.6 1E-15 3.5E-20 141.2 12.2 80 326-405 40-119 (139)
61 2dnm_A SRP46 splicing factor; 99.6 4.3E-16 1.5E-20 135.9 9.2 80 327-406 12-91 (103)
62 2fy1_A RNA-binding motif prote 99.6 8.6E-16 2.9E-20 137.1 11.3 79 327-406 6-84 (116)
63 3p5t_L Cleavage and polyadenyl 99.6 1.2E-16 4.1E-21 135.9 5.4 79 329-407 2-82 (90)
64 2cpz_A CUG triplet repeat RNA- 99.6 7.1E-16 2.4E-20 137.4 10.7 80 327-406 24-103 (115)
65 1x5s_A Cold-inducible RNA-bind 99.6 6.4E-16 2.2E-20 134.5 9.9 82 327-408 11-92 (102)
66 3md1_A Nuclear and cytoplasmic 99.6 5.3E-16 1.8E-20 129.5 8.9 80 150-229 1-80 (83)
67 2dnz_A Probable RNA-binding pr 99.6 6.5E-16 2.2E-20 132.5 9.6 83 148-230 3-85 (95)
68 1p27_B RNA-binding protein 8A; 99.6 1.3E-15 4.4E-20 133.6 11.5 82 326-407 21-102 (106)
69 3mdf_A Peptidyl-prolyl CIS-tra 99.6 7.1E-16 2.4E-20 129.3 9.4 79 327-405 6-84 (85)
70 2d9p_A Polyadenylate-binding p 99.6 1.7E-15 5.8E-20 132.1 12.2 79 327-407 14-92 (103)
71 2cpf_A RNA binding motif prote 99.6 6.6E-16 2.3E-20 133.3 9.5 80 327-406 4-86 (98)
72 3bs9_A Nucleolysin TIA-1 isofo 99.6 4.5E-16 1.5E-20 131.2 8.2 81 149-229 5-85 (87)
73 3mdf_A Peptidyl-prolyl CIS-tra 99.6 4.3E-16 1.5E-20 130.7 8.0 81 147-227 4-84 (85)
74 2cqb_A Peptidyl-prolyl CIS-tra 99.6 5.5E-16 1.9E-20 134.9 8.8 80 327-406 11-90 (102)
75 3ns6_A Eukaryotic translation 99.6 3.6E-16 1.2E-20 135.8 7.5 79 328-406 6-91 (100)
76 4f25_A Polyadenylate-binding p 99.6 5.8E-16 2E-20 138.1 9.0 106 230-344 5-113 (115)
77 2dnm_A SRP46 splicing factor; 99.6 5E-16 1.7E-20 135.4 8.2 83 147-229 10-92 (103)
78 1whw_A Hypothetical protein ri 99.6 5.6E-16 1.9E-20 134.1 8.4 85 147-231 5-89 (99)
79 1x5u_A Splicing factor 3B subu 99.6 1.1E-15 3.8E-20 133.7 10.3 79 327-405 14-92 (105)
80 1x5u_A Splicing factor 3B subu 99.6 7.1E-16 2.4E-20 134.9 9.1 85 146-230 11-95 (105)
81 1x4h_A RNA-binding protein 28; 99.6 1.5E-15 5E-20 134.3 11.2 81 326-406 13-99 (111)
82 2cq0_A Eukaryotic translation 99.6 4.3E-16 1.5E-20 135.9 7.6 84 147-230 12-95 (103)
83 3ns6_A Eukaryotic translation 99.6 2E-16 6.9E-21 137.3 5.4 80 149-228 5-91 (100)
84 1x5t_A Splicing factor 3B subu 99.6 6E-16 2E-20 133.0 8.3 79 327-405 4-83 (96)
85 2cph_A RNA binding motif prote 99.6 2E-15 6.8E-20 132.5 11.8 82 326-407 13-96 (107)
86 2dng_A Eukaryotic translation 99.6 2.1E-15 7.1E-20 131.5 11.6 77 327-405 14-90 (103)
87 2cqc_A Arginine/serine-rich sp 99.6 1.5E-15 5.2E-20 130.1 10.6 80 326-405 13-92 (95)
88 3q2s_C Cleavage and polyadenyl 99.6 5.1E-16 1.7E-20 155.6 8.4 79 149-227 67-147 (229)
89 2dgs_A DAZ-associated protein 99.6 1.1E-15 3.6E-20 132.4 9.2 83 147-230 7-89 (99)
90 2dgo_A Cytotoxic granule-assoc 99.6 1E-15 3.5E-20 136.3 9.4 85 146-230 11-95 (115)
91 2div_A TRNA selenocysteine ass 99.6 1.3E-15 4.5E-20 131.7 9.7 83 147-229 6-93 (99)
92 2la6_A RNA-binding protein FUS 99.6 1.6E-15 5.3E-20 131.3 10.2 80 326-405 11-98 (99)
93 2e5h_A Zinc finger CCHC-type a 99.6 1.3E-15 4.4E-20 130.4 9.6 79 327-405 15-93 (94)
94 2dhg_A TRNA selenocysteine ass 99.6 1.7E-15 5.7E-20 132.3 10.4 83 147-230 6-90 (104)
95 2do4_A Squamous cell carcinoma 99.6 3E-15 1E-19 129.8 11.9 78 327-405 16-93 (100)
96 2cpf_A RNA binding motif prote 99.6 8.7E-16 3E-20 132.6 8.3 83 148-230 3-88 (98)
97 2cqc_A Arginine/serine-rich sp 99.6 7.2E-16 2.5E-20 132.2 7.8 82 147-228 12-93 (95)
98 1x5t_A Splicing factor 3B subu 99.6 6.6E-16 2.3E-20 132.8 7.5 82 148-229 3-85 (96)
99 1x4e_A RNA binding motif, sing 99.6 6.2E-16 2.1E-20 129.8 7.1 81 148-228 3-83 (85)
100 1rk8_A CG8781-PA, CG8781-PA pr 99.6 7.3E-16 2.5E-20 146.6 8.5 84 145-228 67-150 (165)
101 2x1f_A MRNA 3'-END-processing 99.6 1.7E-15 5.7E-20 130.4 9.9 80 328-407 2-81 (96)
102 2cpz_A CUG triplet repeat RNA- 99.6 8.4E-16 2.9E-20 136.9 8.3 83 148-230 23-105 (115)
103 2dnh_A Bruno-like 5, RNA bindi 99.6 3.2E-15 1.1E-19 130.8 11.8 80 327-407 14-96 (105)
104 3ucg_A Polyadenylate-binding p 99.6 1.4E-15 4.9E-20 128.6 9.3 80 149-229 5-84 (89)
105 1x5s_A Cold-inducible RNA-bind 99.6 6.8E-16 2.3E-20 134.3 7.4 83 147-229 9-91 (102)
106 2jrs_A RNA-binding protein 39; 99.6 1.1E-15 3.8E-20 134.6 8.7 83 147-229 23-105 (108)
107 2jrs_A RNA-binding protein 39; 99.6 2.2E-15 7.4E-20 132.7 10.4 82 325-406 23-104 (108)
108 2do0_A HnRNP M, heterogeneous 99.6 5.4E-15 1.9E-19 131.3 13.1 79 327-406 14-92 (114)
109 1s79_A Lupus LA protein; RRM, 99.6 9.6E-16 3.3E-20 133.7 8.0 79 147-227 8-86 (103)
110 2e5h_A Zinc finger CCHC-type a 99.6 8.8E-16 3E-20 131.4 7.6 81 147-227 13-93 (94)
111 1oo0_B CG8781-PA, drosophila Y 99.6 2.9E-15 1E-19 132.2 11.1 82 326-407 24-105 (110)
112 3s7r_A Heterogeneous nuclear r 99.6 1.3E-15 4.5E-20 128.4 8.5 80 146-226 7-86 (87)
113 1p27_B RNA-binding protein 8A; 99.6 1E-15 3.6E-20 134.1 8.1 82 147-228 20-101 (106)
114 2do4_A Squamous cell carcinoma 99.6 1.2E-15 4E-20 132.3 8.3 82 147-229 14-95 (100)
115 2cq3_A RNA-binding protein 9; 99.6 5.5E-15 1.9E-19 128.8 12.6 80 326-407 13-92 (103)
116 2dhg_A TRNA selenocysteine ass 99.6 1.6E-15 5.6E-20 132.4 9.2 78 327-405 8-87 (104)
117 1x4h_A RNA-binding protein 28; 99.6 1.3E-15 4.5E-20 134.6 8.5 84 147-230 12-101 (111)
118 2dgp_A Bruno-like 4, RNA bindi 99.6 1E-15 3.5E-20 134.1 7.7 85 146-230 9-96 (106)
119 2dgp_A Bruno-like 4, RNA bindi 99.6 2E-15 6.8E-20 132.3 9.5 79 327-405 12-93 (106)
120 2ywk_A Putative RNA-binding pr 99.6 1.7E-15 5.9E-20 129.8 8.8 82 146-228 12-93 (95)
121 1wi8_A EIF-4B, eukaryotic tran 99.6 3.4E-15 1.2E-19 130.4 10.9 77 327-405 14-91 (104)
122 2hgn_A Heterogeneous nuclear r 99.6 2.7E-16 9.3E-21 144.5 4.0 77 326-405 44-120 (139)
123 2cph_A RNA binding motif prote 99.6 1.5E-15 5.2E-20 133.3 8.6 85 147-231 12-98 (107)
124 2wbr_A GW182, gawky, LD47780P; 99.6 1.6E-15 5.5E-20 125.9 8.1 73 149-227 6-78 (89)
125 2la6_A RNA-binding protein FUS 99.6 1.5E-15 5.3E-20 131.3 8.4 82 146-227 9-98 (99)
126 1s79_A Lupus LA protein; RRM, 99.6 1.9E-15 6.5E-20 131.8 9.0 80 327-408 10-89 (103)
127 3ulh_A THO complex subunit 4; 99.6 3.6E-15 1.2E-19 130.9 10.9 79 326-405 27-105 (107)
128 2dgx_A KIAA0430 protein; RRM d 99.6 2.6E-15 8.9E-20 129.2 9.7 78 327-407 8-89 (96)
129 2cqb_A Peptidyl-prolyl CIS-tra 99.6 6.6E-16 2.3E-20 134.4 6.0 83 147-229 9-91 (102)
130 2kxn_B Transformer-2 protein h 99.6 1.5E-15 5.2E-20 138.1 8.6 85 146-230 42-126 (129)
131 2dh8_A DAZ-associated protein 99.6 2.3E-15 7.8E-20 131.7 9.3 83 147-230 13-95 (105)
132 2cpe_A RNA-binding protein EWS 99.6 1.9E-15 6.5E-20 134.1 8.9 79 327-405 14-100 (113)
133 2cqd_A RNA-binding region cont 99.6 2.1E-15 7.3E-20 134.5 9.1 83 146-229 13-95 (116)
134 1wez_A HnRNP H', FTP-3, hetero 99.6 2.8E-15 9.6E-20 130.5 9.6 76 327-405 14-89 (102)
135 2i2y_A Fusion protein consists 99.6 1.5E-15 5.1E-20 142.0 8.4 118 188-318 9-149 (150)
136 2dnh_A Bruno-like 5, RNA bindi 99.6 2.6E-15 8.8E-20 131.4 9.4 81 148-229 13-96 (105)
137 1h2v_Z 20 kDa nuclear CAP bind 99.6 2.2E-15 7.6E-20 141.8 9.5 85 145-229 34-118 (156)
138 2fy1_A RNA-binding motif prote 99.6 2.2E-15 7.5E-20 134.5 9.0 81 148-229 5-85 (116)
139 2dgu_A Heterogeneous nuclear r 99.6 5.2E-15 1.8E-19 129.0 11.2 74 326-407 9-82 (103)
140 2div_A TRNA selenocysteine ass 99.6 2.3E-15 7.8E-20 130.2 8.7 78 327-404 8-90 (99)
141 2ywk_A Putative RNA-binding pr 99.6 3.1E-15 1.1E-19 128.2 9.5 78 327-405 15-92 (95)
142 2khc_A Testis-specific RNP-typ 99.6 1.6E-15 5.5E-20 135.7 7.9 80 148-227 38-117 (118)
143 3n9u_C Cleavage and polyadenyl 99.6 2E-15 6.8E-20 142.0 8.9 80 149-228 54-135 (156)
144 4a8x_A RNA-binding protein wit 99.6 3.2E-15 1.1E-19 126.1 9.3 78 328-405 4-82 (88)
145 2cpe_A RNA-binding protein EWS 99.6 1.6E-15 5.6E-20 134.5 7.8 85 146-230 11-103 (113)
146 2dng_A Eukaryotic translation 99.6 2.4E-15 8.3E-20 131.1 8.6 81 147-229 12-92 (103)
147 2khc_A Testis-specific RNP-typ 99.6 4.1E-15 1.4E-19 133.0 10.3 80 326-405 38-117 (118)
148 1sjq_A Polypyrimidine tract-bi 99.6 4.6E-15 1.6E-19 128.9 10.0 77 147-229 13-91 (105)
149 2hvz_A Splicing factor, argini 99.6 1.3E-15 4.5E-20 132.3 6.7 84 151-239 1-100 (101)
150 2mss_A Protein (musashi1); RNA 99.6 1.1E-15 3.8E-20 125.0 5.9 75 152-227 1-75 (75)
151 3s7r_A Heterogeneous nuclear r 99.6 4.5E-15 1.5E-19 125.1 9.8 77 327-404 10-86 (87)
152 1oo0_B CG8781-PA, drosophila Y 99.6 1.7E-15 5.9E-20 133.7 7.5 83 146-228 22-104 (110)
153 2krb_A Eukaryotic translation 99.6 2.5E-15 8.5E-20 125.0 8.0 73 150-224 1-80 (81)
154 1x4b_A Heterogeneous nuclear r 99.6 3.6E-15 1.2E-19 133.0 9.6 80 325-405 24-103 (116)
155 2cqi_A Nucleolysin TIAR; RNA r 99.6 7.7E-15 2.6E-19 127.9 11.3 79 327-407 14-92 (103)
156 2d9p_A Polyadenylate-binding p 99.6 2.2E-15 7.4E-20 131.4 7.8 81 147-229 12-92 (103)
157 3ulh_A THO complex subunit 4; 99.6 2.8E-15 9.6E-20 131.6 8.4 80 147-227 26-105 (107)
158 2dgv_A HnRNP M, heterogeneous 99.6 6.2E-15 2.1E-19 125.6 10.1 81 148-230 6-86 (92)
159 3ucg_A Polyadenylate-binding p 99.6 3.6E-15 1.2E-19 126.1 8.6 78 327-405 5-82 (89)
160 4a8x_A RNA-binding protein wit 99.6 2E-15 7E-20 127.3 7.0 81 149-229 3-84 (88)
161 3n9u_C Cleavage and polyadenyl 99.6 4.3E-15 1.5E-19 139.6 9.9 80 327-406 54-135 (156)
162 1wi8_A EIF-4B, eukaryotic tran 99.6 2.6E-15 8.9E-20 131.2 7.8 80 148-229 13-93 (104)
163 2dh8_A DAZ-associated protein 99.6 3.1E-15 1.1E-19 130.9 8.3 78 327-405 15-92 (105)
164 2dgv_A HnRNP M, heterogeneous 99.6 5E-15 1.7E-19 126.1 9.4 77 327-405 7-83 (92)
165 1uaw_A Mouse-musashi-1; RNP-ty 99.6 1.2E-15 4E-20 125.5 5.1 76 151-227 1-76 (77)
166 2cqp_A RNA-binding protein 12; 99.6 2.3E-15 7.8E-20 129.9 7.2 79 327-405 14-92 (98)
167 2m2b_A RNA-binding protein 10; 99.6 1.6E-15 5.6E-20 138.4 6.6 81 149-230 22-108 (131)
168 1p1t_A Cleavage stimulation fa 99.6 2.7E-15 9.1E-20 131.0 7.6 80 326-405 6-85 (104)
169 2ek1_A RNA-binding protein 12; 99.6 1.8E-15 6.3E-20 129.7 6.3 78 328-405 15-92 (95)
170 2dis_A Unnamed protein product 99.6 6.5E-15 2.2E-19 129.7 10.0 84 327-410 7-94 (109)
171 2cqg_A TDP-43, TAR DNA-binding 99.6 1.5E-14 5.1E-19 126.0 11.9 79 327-407 14-92 (103)
172 1p1t_A Cleavage stimulation fa 99.6 2.5E-15 8.5E-20 131.2 7.0 81 149-229 7-87 (104)
173 2wbr_A GW182, gawky, LD47780P; 99.6 4.2E-15 1.4E-19 123.4 7.8 72 328-405 7-78 (89)
174 1u6f_A Tcubp1, RNA-binding pro 99.6 3.7E-15 1.3E-19 137.4 8.4 82 148-229 40-121 (139)
175 2ek1_A RNA-binding protein 12; 99.6 1.4E-15 4.6E-20 130.5 5.1 80 149-228 14-93 (95)
176 2mss_A Protein (musashi1); RNA 99.6 1.8E-15 6E-20 123.8 5.5 74 330-404 1-74 (75)
177 2kxn_B Transformer-2 protein h 99.6 4.7E-15 1.6E-19 134.9 8.9 79 327-405 45-123 (129)
178 1x4c_A Splicing factor, argini 99.6 1.2E-14 4E-19 128.0 11.0 72 327-405 14-90 (108)
179 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 1.3E-14 4.5E-19 133.6 11.9 80 325-404 60-139 (140)
180 3ex7_B RNA-binding protein 8A; 99.6 3.4E-15 1.2E-19 135.2 7.7 82 147-228 19-100 (126)
181 2kt5_A RNA and export factor-b 99.6 1E-14 3.5E-19 131.7 10.7 85 326-411 33-117 (124)
182 1wez_A HnRNP H', FTP-3, hetero 99.6 2.4E-15 8.3E-20 130.9 6.3 79 147-228 12-90 (102)
183 2cq4_A RNA binding motif prote 99.6 6.2E-15 2.1E-19 131.0 9.1 81 326-407 23-103 (114)
184 2j76_E EIF-4B, EIF4B, eukaryot 99.6 3E-15 1E-19 129.9 6.8 82 146-229 15-97 (100)
185 2j76_E EIF-4B, EIF4B, eukaryot 99.6 3.1E-15 1E-19 129.8 6.9 80 325-406 16-96 (100)
186 1x4a_A Splicing factor, argini 99.6 1.3E-14 4.5E-19 127.8 11.0 76 327-405 21-96 (109)
187 2m2b_A RNA-binding protein 10; 99.6 2.4E-15 8.1E-20 137.3 6.3 80 326-406 21-106 (131)
188 2cqp_A RNA-binding protein 12; 99.6 1.9E-15 6.4E-20 130.5 5.3 82 148-229 13-94 (98)
189 2ki2_A SS-DNA binding protein 99.6 1.6E-15 5.3E-20 128.8 4.7 79 151-230 2-80 (90)
190 2do0_A HnRNP M, heterogeneous 99.6 6.4E-15 2.2E-19 130.8 9.0 81 147-228 12-92 (114)
191 2jwn_A Embryonic polyadenylate 99.6 7E-15 2.4E-19 132.7 9.3 79 326-405 34-112 (124)
192 2cq3_A RNA-binding protein 9; 99.6 9E-15 3.1E-19 127.4 9.5 81 147-229 12-92 (103)
193 2rs2_A Musashi-1, RNA-binding 99.6 4.6E-15 1.6E-19 130.8 7.7 83 146-229 21-103 (109)
194 2cq4_A RNA binding motif prote 99.6 3.4E-15 1.2E-19 132.7 6.8 77 150-227 25-101 (114)
195 1wg5_A Heterogeneous nuclear r 99.6 1.1E-14 3.9E-19 127.2 9.9 77 327-405 14-91 (104)
196 2cqi_A Nucleolysin TIAR; RNA r 99.6 7.7E-15 2.6E-19 127.9 8.9 81 147-229 12-92 (103)
197 1x4e_A RNA binding motif, sing 99.6 2.4E-15 8E-20 126.2 5.4 77 327-403 4-80 (85)
198 2rs2_A Musashi-1, RNA-binding 99.6 8.9E-15 3E-19 129.0 9.3 80 326-406 23-102 (109)
199 1uaw_A Mouse-musashi-1; RNP-ty 99.6 2.5E-15 8.7E-20 123.4 5.3 76 329-405 1-76 (77)
200 2cpi_A CCR4-NOT transcription 99.6 1E-14 3.4E-19 129.1 9.6 78 328-405 15-98 (111)
201 1wg5_A Heterogeneous nuclear r 99.6 5.4E-15 1.8E-19 129.2 7.6 80 148-229 13-93 (104)
202 2dgx_A KIAA0430 protein; RRM d 99.5 5.8E-15 2E-19 127.0 7.6 80 148-230 7-90 (96)
203 2cqg_A TDP-43, TAR DNA-binding 99.5 1E-14 3.4E-19 127.1 9.2 83 146-230 11-93 (103)
204 2ki2_A SS-DNA binding protein 99.5 1.9E-15 6.4E-20 128.3 4.3 80 329-409 2-81 (90)
205 1x4d_A Matrin 3; structural ge 99.5 8.2E-15 2.8E-19 127.1 8.5 75 327-407 14-91 (102)
206 2dgw_A Probable RNA-binding pr 99.5 1.3E-14 4.5E-19 123.3 9.6 76 327-405 9-84 (91)
207 1x4a_A Splicing factor, argini 99.5 1.1E-14 3.9E-19 128.2 9.5 81 147-230 19-99 (109)
208 1sjq_A Polypyrimidine tract-bi 99.5 5.8E-15 2E-19 128.2 7.4 74 327-406 15-90 (105)
209 2nlw_A Eukaryotic translation 99.5 6.5E-15 2.2E-19 128.9 7.8 80 149-230 14-100 (105)
210 1iqt_A AUF1, heterogeneous nuc 99.5 3.4E-15 1.1E-19 122.1 5.4 74 152-226 1-74 (75)
211 1x4d_A Matrin 3; structural ge 99.5 2.8E-15 9.5E-20 130.1 5.2 82 147-234 12-96 (102)
212 2fc8_A NCL protein; structure 99.5 2.8E-14 9.5E-19 124.0 11.4 77 326-405 13-89 (102)
213 2cpy_A RNA-binding protein 12; 99.5 2.6E-15 8.8E-20 133.6 4.9 80 327-408 14-94 (114)
214 2dis_A Unnamed protein product 99.5 8.7E-15 3E-19 128.9 8.2 83 148-230 6-92 (109)
215 2nlw_A Eukaryotic translation 99.5 7.5E-15 2.6E-19 128.5 7.7 78 327-406 14-98 (105)
216 2cq1_A PTB-like protein L; RRM 99.5 3.2E-14 1.1E-18 123.3 11.6 75 327-407 14-90 (101)
217 2cpy_A RNA-binding protein 12; 99.5 3.1E-15 1.1E-19 133.1 5.2 79 148-228 13-92 (114)
218 2fc9_A NCL protein; structure 99.5 1.9E-14 6.4E-19 124.9 10.0 75 327-405 14-88 (101)
219 2kt5_A RNA and export factor-b 99.5 8.3E-15 2.8E-19 132.3 8.0 82 148-230 33-114 (124)
220 2dgw_A Probable RNA-binding pr 99.5 8.1E-15 2.8E-19 124.7 7.4 80 147-229 7-86 (91)
221 2jwn_A Embryonic polyadenylate 99.5 9.1E-15 3.1E-19 132.0 8.2 79 150-229 36-114 (124)
222 2cpi_A CCR4-NOT transcription 99.5 4.9E-15 1.7E-19 131.1 6.2 88 146-233 11-104 (111)
223 2krb_A Eukaryotic translation 99.5 4.8E-15 1.6E-19 123.2 5.8 72 329-402 2-80 (81)
224 2cpj_A Non-POU domain-containi 99.5 8.7E-15 3E-19 126.6 7.6 85 147-237 12-96 (99)
225 2dnn_A RNA-binding protein 12; 99.5 1.5E-14 5E-19 127.3 9.0 76 327-405 15-90 (109)
226 1x4b_A Heterogeneous nuclear r 99.5 8.3E-15 2.8E-19 130.6 7.5 80 150-230 27-106 (116)
227 2lea_A Serine/arginine-rich sp 99.5 4.1E-15 1.4E-19 136.4 5.4 82 148-229 45-126 (135)
228 3beg_B Splicing factor, argini 99.5 1.8E-14 6.2E-19 128.3 9.4 68 327-401 15-82 (115)
229 2hgl_A HNRPF protein, heteroge 99.5 3.9E-15 1.3E-19 136.3 5.2 79 147-227 41-122 (136)
230 3r27_A HnRNP L, heterogeneous 99.5 1E-14 3.5E-19 125.4 7.4 79 145-229 16-96 (100)
231 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 1E-14 3.5E-19 134.4 7.9 78 149-226 62-139 (140)
232 1wex_A Hypothetical protein (r 99.5 2.8E-14 9.7E-19 124.4 10.2 75 327-407 14-90 (104)
233 2db1_A Heterogeneous nuclear r 99.5 4.6E-15 1.6E-19 132.8 5.4 78 148-227 15-95 (118)
234 2dnq_A RNA-binding protein 4B; 99.5 2.8E-14 9.5E-19 121.1 9.9 71 327-405 7-77 (90)
235 1x5o_A RNA binding motif, sing 99.5 1.4E-14 4.7E-19 128.7 8.4 76 148-224 23-98 (114)
236 1wf1_A RNA-binding protein RAL 99.5 2.4E-14 8.2E-19 126.4 9.8 91 305-405 6-97 (110)
237 3r27_A HnRNP L, heterogeneous 99.5 1.5E-14 5.2E-19 124.3 8.1 74 327-406 20-95 (100)
238 1x5o_A RNA binding motif, sing 99.5 4.1E-14 1.4E-18 125.6 11.2 78 327-405 24-109 (114)
239 2db1_A Heterogeneous nuclear r 99.5 1.3E-14 4.5E-19 129.8 7.9 78 327-406 16-96 (118)
240 2lmi_A GRSF-1, G-rich sequence 99.5 5.2E-15 1.8E-19 130.0 5.0 80 147-228 8-90 (107)
241 1wel_A RNA-binding protein 12; 99.5 6.9E-15 2.4E-19 132.9 5.8 81 326-407 23-103 (124)
242 2hgl_A HNRPF protein, heteroge 99.5 9.5E-15 3.3E-19 133.7 6.8 77 327-405 43-122 (136)
243 2dnn_A RNA-binding protein 12; 99.5 9.9E-15 3.4E-19 128.4 6.5 76 150-228 16-91 (109)
244 2cpx_A Hypothetical protein FL 99.5 7.8E-15 2.7E-19 130.5 5.7 81 327-407 24-104 (115)
245 1wel_A RNA-binding protein 12; 99.5 3.8E-15 1.3E-19 134.6 3.5 80 148-228 23-102 (124)
246 2err_A Ataxin-2-binding protei 99.5 1.5E-14 5E-19 127.6 7.1 83 145-229 24-106 (109)
247 2err_A Ataxin-2-binding protei 99.5 1.7E-14 5.8E-19 127.2 7.4 79 326-406 27-105 (109)
248 2cpd_A Apobec-1 stimulating pr 99.5 7.1E-14 2.4E-18 120.8 11.2 73 325-405 12-86 (99)
249 2hgn_A Heterogeneous nuclear r 99.5 7E-15 2.4E-19 135.1 5.0 79 148-229 44-122 (139)
250 2jvr_A Nucleolar protein 3; RN 99.5 1.4E-14 4.9E-19 127.7 6.6 74 328-405 28-102 (111)
251 1x4g_A Nucleolysin TIAR; struc 99.5 3.8E-14 1.3E-18 124.8 9.4 75 327-407 24-98 (109)
252 2dha_A FLJ20171 protein; RRM d 99.5 1.3E-14 4.5E-19 130.4 6.5 78 148-227 21-102 (123)
253 2a3j_A U1 small nuclear ribonu 99.5 2.6E-14 8.9E-19 129.3 8.4 78 327-407 28-109 (127)
254 2hgm_A HNRPF protein, heteroge 99.5 2.2E-14 7.4E-19 129.3 7.8 78 147-227 39-118 (126)
255 2kvi_A Nuclear polyadenylated 99.5 3.3E-14 1.1E-18 122.3 8.5 74 327-408 9-83 (96)
256 2la4_A Nuclear and cytoplasmic 99.5 6.3E-14 2.1E-18 121.6 10.3 77 147-229 24-100 (101)
257 2ad9_A Polypyrimidine tract-bi 99.5 2.2E-14 7.4E-19 127.7 7.5 77 147-229 28-106 (119)
258 2cq1_A PTB-like protein L; RRM 99.5 2.8E-14 9.6E-19 123.7 7.8 77 147-229 12-90 (101)
259 1x4c_A Splicing factor, argini 99.5 3.9E-14 1.3E-18 124.6 8.9 75 148-229 13-92 (108)
260 2lcw_A RNA-binding protein FUS 99.2 1.7E-15 5.8E-20 135.2 0.0 79 327-405 6-92 (116)
261 1x4f_A Matrin 3; structural ge 99.5 8.4E-15 2.9E-19 129.0 4.4 84 147-236 22-108 (112)
262 2ad9_A Polypyrimidine tract-bi 99.5 3.9E-14 1.3E-18 126.1 8.7 74 327-406 30-105 (119)
263 1iqt_A AUF1, heterogeneous nuc 99.5 7.2E-15 2.5E-19 120.1 3.7 74 330-404 1-74 (75)
264 2a3j_A U1 small nuclear ribonu 99.5 3.9E-14 1.3E-18 128.1 8.9 81 147-230 26-110 (127)
265 2dgt_A RNA-binding protein 30; 99.5 7.2E-14 2.4E-18 119.0 9.9 71 327-405 9-79 (92)
266 2jvr_A Nucleolar protein 3; RN 99.5 1.7E-14 5.8E-19 127.3 6.0 79 147-229 25-104 (111)
267 1x4f_A Matrin 3; structural ge 99.5 2.9E-14 1E-18 125.5 7.5 76 327-408 24-102 (112)
268 2dnq_A RNA-binding protein 4B; 99.5 6.1E-14 2.1E-18 119.0 9.2 76 147-230 5-80 (90)
269 2lcw_A RNA-binding protein FUS 99.2 2.1E-15 7E-20 134.6 0.0 83 147-229 4-94 (116)
270 1x4g_A Nucleolysin TIAR; struc 99.5 7.3E-14 2.5E-18 123.0 9.7 80 146-231 21-100 (109)
271 1wex_A Hypothetical protein (r 99.5 3.5E-14 1.2E-18 123.8 7.5 77 147-229 12-90 (104)
272 1whx_A Hypothetical protein ri 99.5 9.9E-14 3.4E-18 122.7 10.5 76 327-408 9-84 (111)
273 1fj7_A Nucleolin RBD1, protein 99.5 5E-15 1.7E-19 128.6 2.0 79 149-229 16-94 (101)
274 1why_A Hypothetical protein ri 99.5 5.7E-14 2E-18 120.9 8.5 77 148-230 15-93 (97)
275 2hvz_A Splicing factor, argini 99.5 5.2E-14 1.8E-18 122.1 8.1 72 329-405 1-72 (101)
276 1why_A Hypothetical protein ri 99.5 7.7E-14 2.6E-18 120.1 9.1 73 327-405 16-90 (97)
277 2xs2_A Deleted in azoospermia- 99.5 4.8E-14 1.6E-18 122.6 7.8 80 326-408 7-86 (102)
278 2lmi_A GRSF-1, G-rich sequence 99.5 1.6E-14 5.3E-19 127.0 4.7 78 327-406 10-90 (107)
279 2fc9_A NCL protein; structure 99.5 2.8E-14 9.4E-19 123.9 6.1 80 147-230 12-91 (101)
280 2f3j_A RNA and export factor b 99.5 3.8E-14 1.3E-18 136.1 7.4 81 148-229 86-166 (177)
281 2ytc_A PRE-mRNA-splicing facto 99.5 8.8E-14 3E-18 116.5 8.7 73 327-405 11-84 (85)
282 2ytc_A PRE-mRNA-splicing facto 99.5 7.6E-14 2.6E-18 116.9 8.3 75 147-227 9-84 (85)
283 2fc8_A NCL protein; structure 99.5 4.1E-14 1.4E-18 122.9 6.9 82 146-230 11-92 (102)
284 2cpj_A Non-POU domain-containi 99.5 9.1E-14 3.1E-18 120.1 8.8 73 327-405 14-86 (99)
285 2e5j_A Methenyltetrahydrofolat 99.5 6E-14 2E-18 120.8 7.5 77 149-230 18-94 (97)
286 3lqv_A PRE-mRNA branch site pr 99.5 9.9E-14 3.4E-18 123.3 9.1 78 327-407 7-84 (115)
287 1wg1_A KIAA1579 protein, homol 99.5 3.3E-14 1.1E-18 120.1 5.6 84 148-238 3-86 (88)
288 2cpx_A Hypothetical protein FL 99.5 1.4E-14 4.7E-19 128.9 3.4 83 148-230 23-105 (115)
289 2dha_A FLJ20171 protein; RRM d 99.5 3.2E-14 1.1E-18 127.9 5.7 76 328-405 23-102 (123)
290 2j8a_A Histone-lysine N-methyl 99.5 4.7E-14 1.6E-18 124.9 6.6 77 329-405 3-93 (136)
291 2e5g_A U6 snRNA-specific termi 99.5 1.8E-13 6.3E-18 117.0 10.2 77 147-229 5-81 (94)
292 2xs2_A Deleted in azoospermia- 99.5 3.7E-14 1.3E-18 123.3 5.8 77 149-228 8-84 (102)
293 3egn_A RNA-binding protein 40; 99.5 9.2E-15 3.1E-19 135.4 2.1 82 145-229 40-129 (143)
294 2dnp_A RNA-binding protein 14; 99.5 1.4E-13 4.8E-18 116.7 9.2 71 327-405 8-78 (90)
295 1fj7_A Nucleolin RBD1, protein 99.5 1.1E-14 3.9E-19 126.3 2.4 77 327-405 16-92 (101)
296 2e5j_A Methenyltetrahydrofolat 99.5 9.3E-14 3.2E-18 119.6 8.0 75 327-406 18-92 (97)
297 2xnq_A Nuclear polyadenylated 99.5 1.8E-13 6.1E-18 117.9 9.8 72 326-405 20-92 (97)
298 2dnl_A Cytoplasmic polyadenyla 99.5 4.4E-14 1.5E-18 125.6 6.0 74 148-224 6-82 (114)
299 2e5g_A U6 snRNA-specific termi 99.5 1.3E-13 4.3E-18 118.1 8.6 72 328-405 8-79 (94)
300 1whx_A Hypothetical protein ri 99.5 2E-14 6.9E-19 127.2 3.7 75 149-229 9-83 (111)
301 2j8a_A Histone-lysine N-methyl 99.5 5.4E-14 1.8E-18 124.5 6.3 79 151-229 3-95 (136)
302 1nu4_A U1A RNA binding domain; 99.5 5E-14 1.7E-18 121.1 6.0 82 147-231 5-90 (97)
303 1fjc_A Nucleolin RBD2, protein 99.5 8.7E-14 3E-18 119.4 7.5 74 327-405 15-88 (96)
304 2jvo_A Nucleolar protein 3; nu 99.5 1.1E-13 3.8E-18 121.7 8.3 78 145-230 26-103 (108)
305 2f3j_A RNA and export factor b 99.5 8E-14 2.7E-18 133.9 8.0 82 326-408 86-167 (177)
306 1nu4_A U1A RNA binding domain; 99.5 6.8E-14 2.3E-18 120.3 6.8 78 327-407 7-88 (97)
307 2cq2_A Hypothetical protein LO 99.5 8.9E-14 3.1E-18 122.5 7.5 77 328-410 25-108 (114)
308 2xnq_A Nuclear polyadenylated 99.5 1.6E-13 5.4E-18 118.2 8.9 78 144-229 16-94 (97)
309 2hgm_A HNRPF protein, heteroge 99.4 8E-14 2.7E-18 125.6 7.1 76 327-405 41-118 (126)
310 2kvi_A Nuclear polyadenylated 99.4 8.9E-14 3.1E-18 119.5 7.1 75 147-229 7-82 (96)
311 2dnp_A RNA-binding protein 14; 99.4 1.2E-13 3.9E-18 117.2 7.7 76 147-230 6-81 (90)
312 2cqh_A IGF-II mRNA-binding pro 99.4 8E-14 2.7E-18 118.9 6.7 72 327-405 7-80 (93)
313 2jvo_A Nucleolar protein 3; nu 99.4 1.1E-13 3.8E-18 121.7 7.6 73 325-405 28-100 (108)
314 2dgt_A RNA-binding protein 30; 99.4 1.1E-13 3.8E-18 117.8 6.9 77 146-230 6-82 (92)
315 3pgw_S U1-70K; protein-RNA com 99.4 1.1E-13 3.7E-18 151.6 8.6 82 148-229 100-181 (437)
316 2dgu_A Heterogeneous nuclear r 99.4 1.3E-13 4.5E-18 120.0 7.4 74 148-229 9-82 (103)
317 2pe8_A Splicing factor 45; RRM 99.4 4.4E-13 1.5E-17 117.1 10.7 80 327-406 7-92 (105)
318 2la4_A Nuclear and cytoplasmic 99.4 8.5E-14 2.9E-18 120.7 6.0 72 328-405 27-98 (101)
319 3beg_B Splicing factor, argini 99.4 1.2E-13 4.2E-18 122.9 7.1 69 149-224 15-83 (115)
320 2cpd_A Apobec-1 stimulating pr 99.4 2.7E-13 9.1E-18 117.2 8.5 75 148-230 13-89 (99)
321 1wg1_A KIAA1579 protein, homol 99.4 3E-13 1E-17 114.2 8.6 71 328-405 5-75 (88)
322 1fjc_A Nucleolin RBD2, protein 99.4 4.4E-14 1.5E-18 121.3 3.2 77 148-229 14-90 (96)
323 1x5p_A Negative elongation fac 99.4 7.2E-13 2.5E-17 114.0 10.6 71 327-405 14-84 (97)
324 1b7f_A Protein (SXL-lethal pro 99.4 4.4E-13 1.5E-17 126.9 10.1 79 328-406 3-81 (168)
325 1fxl_A Paraneoplastic encephal 99.4 5E-13 1.7E-17 126.1 10.5 79 328-406 2-80 (167)
326 1wf1_A RNA-binding protein RAL 99.4 2.7E-13 9.4E-18 119.5 7.9 73 149-229 26-99 (110)
327 2diu_A KIAA0430 protein; struc 99.4 4.7E-13 1.6E-17 112.1 8.8 79 148-236 6-90 (96)
328 2e44_A Insulin-like growth fac 99.4 3.2E-13 1.1E-17 115.8 8.0 77 327-407 14-91 (96)
329 2voo_A Lupus LA protein; RNA-b 99.4 1.1E-12 3.8E-17 127.7 12.8 123 284-408 63-187 (193)
330 2e44_A Insulin-like growth fac 99.4 2E-13 6.8E-18 117.2 6.5 78 149-230 14-92 (96)
331 3egn_A RNA-binding protein 40; 99.4 7.3E-14 2.5E-18 129.4 3.4 81 327-407 44-129 (143)
332 2cqh_A IGF-II mRNA-binding pro 99.4 1.7E-13 6E-18 116.8 4.9 76 147-229 5-82 (93)
333 2hzc_A Splicing factor U2AF 65 99.4 4.2E-13 1.4E-17 112.8 7.1 70 149-225 5-85 (87)
334 2qfj_A FBP-interacting repress 99.4 6.4E-13 2.2E-17 131.2 9.5 82 148-229 123-204 (216)
335 1sjr_A Polypyrimidine tract-bi 99.4 1E-12 3.6E-17 122.9 10.3 76 327-406 45-122 (164)
336 2dnl_A Cytoplasmic polyadenyla 99.4 5.2E-13 1.8E-17 118.6 7.9 74 327-403 7-83 (114)
337 2hzc_A Splicing factor U2AF 65 99.4 6.9E-13 2.4E-17 111.4 8.0 70 327-403 5-85 (87)
338 3zzy_A Polypyrimidine tract-bi 99.4 1.9E-12 6.3E-17 116.7 11.1 73 328-405 28-103 (130)
339 1x5p_A Negative elongation fac 99.4 1E-12 3.4E-17 113.1 8.9 76 147-230 12-87 (97)
340 2pe8_A Splicing factor 45; RRM 99.4 1.1E-12 3.9E-17 114.4 9.2 82 147-228 5-92 (105)
341 2yh0_A Splicing factor U2AF 65 99.4 9.1E-13 3.1E-17 128.3 9.4 83 148-230 112-194 (198)
342 1l3k_A Heterogeneous nuclear r 99.4 1.2E-12 4.1E-17 127.2 10.1 81 326-407 11-91 (196)
343 2e5i_A Heterogeneous nuclear r 99.4 2.8E-12 9.5E-17 115.0 11.6 73 327-405 24-99 (124)
344 2cq2_A Hypothetical protein LO 99.4 5.2E-13 1.8E-17 117.6 6.6 73 147-225 22-101 (114)
345 3d2w_A TAR DNA-binding protein 99.4 1.2E-12 4.3E-17 110.7 8.7 69 327-404 10-80 (89)
346 3d2w_A TAR DNA-binding protein 99.4 8E-13 2.7E-17 111.9 6.7 75 146-229 7-83 (89)
347 1sjr_A Polypyrimidine tract-bi 99.3 1.2E-12 4.3E-17 122.4 8.4 77 149-229 45-123 (164)
348 2diu_A KIAA0430 protein; struc 99.3 1.8E-12 6.2E-17 108.6 8.4 72 329-410 10-86 (96)
349 2voo_A Lupus LA protein; RNA-b 99.3 1.7E-12 5.7E-17 126.5 8.5 79 149-229 108-186 (193)
350 3zzy_A Polypyrimidine tract-bi 99.3 2.5E-12 8.4E-17 115.9 8.8 77 149-230 27-106 (130)
351 3v4m_A Splicing factor U2AF 65 99.3 2.9E-12 9.8E-17 111.9 8.7 79 327-405 4-94 (105)
352 1wf0_A TDP-43, TAR DNA-binding 99.3 6.9E-13 2.4E-17 111.9 4.1 75 148-229 3-77 (88)
353 2bz2_A Negative elongation fac 99.3 2.3E-12 7.9E-17 115.6 7.6 73 327-407 38-110 (121)
354 2bz2_A Negative elongation fac 99.3 3E-12 1E-16 114.9 7.3 77 146-230 35-111 (121)
355 1wf0_A TDP-43, TAR DNA-binding 99.3 4.3E-12 1.5E-16 107.0 7.7 68 327-403 4-73 (88)
356 2e5i_A Heterogeneous nuclear r 99.3 4.9E-12 1.7E-16 113.4 8.5 74 151-230 26-102 (124)
357 3ue2_A Poly(U)-binding-splicin 99.3 6.7E-12 2.3E-16 111.8 9.0 79 327-405 19-106 (118)
358 3u1l_A PRE-mRNA-splicing facto 99.3 4.5E-12 1.5E-16 126.5 8.0 80 326-411 132-232 (240)
359 3u1l_A PRE-mRNA-splicing facto 99.2 7.4E-12 2.5E-16 124.9 7.9 77 147-229 131-228 (240)
360 1jmt_A Splicing factor U2AF 35 99.2 3.4E-12 1.2E-16 111.2 4.6 72 333-405 20-103 (104)
361 3pgw_A U1-A; protein-RNA compl 99.2 1.8E-11 6.3E-16 126.2 10.6 79 327-408 8-90 (282)
362 2dit_A HIV TAT specific factor 99.2 1.9E-11 6.5E-16 108.1 9.2 76 327-406 14-100 (112)
363 2dit_A HIV TAT specific factor 99.2 1.9E-11 6.6E-16 108.0 8.3 84 146-233 11-105 (112)
364 3v4m_A Splicing factor U2AF 65 99.2 1.9E-11 6.4E-16 106.7 7.5 80 148-227 3-94 (105)
365 1jmt_A Splicing factor U2AF 35 99.2 1.2E-11 4E-16 107.8 3.6 72 155-227 20-103 (104)
366 3ue2_A Poly(U)-binding-splicin 99.1 4.5E-11 1.5E-15 106.4 7.0 79 149-227 19-106 (118)
367 2d9o_A DNAJ (HSP40) homolog, s 99.1 3.2E-10 1.1E-14 97.7 9.0 61 338-405 27-87 (100)
368 3s6e_A RNA-binding protein 39; 99.1 2.7E-10 9.3E-15 100.6 8.1 75 328-406 7-91 (114)
369 2d9o_A DNAJ (HSP40) homolog, s 99.0 9.2E-10 3.2E-14 94.8 9.6 74 149-229 9-89 (100)
370 3tht_A Alkylated DNA repair pr 99.0 6.5E-10 2.2E-14 116.8 8.3 64 327-396 17-82 (345)
371 3tht_A Alkylated DNA repair pr 99.0 6.6E-10 2.2E-14 116.8 7.8 66 147-218 15-82 (345)
372 1owx_A Lupus LA protein, SS-B, 98.9 3.6E-09 1.2E-13 93.7 8.3 73 326-404 16-92 (121)
373 3s6e_A RNA-binding protein 39; 98.8 3.6E-09 1.2E-13 93.4 7.0 76 148-227 5-90 (114)
374 2dnr_A Synaptojanin-1; RRM dom 98.7 2.3E-08 7.8E-13 83.0 6.9 69 329-406 8-84 (91)
375 1owx_A Lupus LA protein, SS-B, 98.7 1.5E-08 5.2E-13 89.7 5.8 70 147-222 15-88 (121)
376 3dxb_A Thioredoxin N-terminall 98.6 5.8E-08 2E-12 96.3 8.3 67 339-405 140-210 (222)
377 2dnr_A Synaptojanin-1; RRM dom 98.6 5.6E-08 1.9E-12 80.7 5.7 72 149-229 6-85 (91)
378 1ufw_A Synaptojanin 2; RNP dom 98.5 6.1E-08 2.1E-12 80.8 3.1 69 328-405 15-92 (95)
379 1ufw_A Synaptojanin 2; RNP dom 98.4 1.7E-07 5.8E-12 78.1 4.4 71 148-227 13-92 (95)
380 3dxb_A Thioredoxin N-terminall 98.4 8.4E-07 2.9E-11 87.9 9.7 81 147-227 121-210 (222)
381 2l9w_A U4/U6 snRNA-associated- 98.1 6.8E-06 2.3E-10 69.8 6.9 70 328-403 21-95 (117)
382 2l9w_A U4/U6 snRNA-associated- 97.9 2.1E-05 7.2E-10 66.8 7.7 77 142-224 13-94 (117)
383 2dhx_A Poly (ADP-ribose) polym 97.7 0.00015 5.3E-09 61.1 9.7 87 148-243 6-99 (104)
384 1uw4_A UPF3X; nonsense mediate 96.6 0.0071 2.4E-07 50.3 8.3 70 151-220 2-73 (91)
385 2dhx_A Poly (ADP-ribose) polym 96.4 0.02 6.9E-07 48.2 9.9 90 229-341 7-99 (104)
386 1wey_A Calcipressin 1; structu 96.4 0.0028 9.7E-08 53.6 4.6 73 328-406 5-82 (104)
387 1wey_A Calcipressin 1; structu 96.3 0.0065 2.2E-07 51.5 6.3 72 150-227 5-81 (104)
388 1uw4_A UPF3X; nonsense mediate 96.3 0.013 4.6E-07 48.6 8.2 70 329-398 2-73 (91)
389 3ctr_A Poly(A)-specific ribonu 95.7 0.014 4.7E-07 48.8 5.4 56 327-391 5-60 (101)
390 1whv_A Poly(A)-specific ribonu 95.7 0.014 4.9E-07 48.5 5.5 55 328-391 16-70 (100)
391 1whv_A Poly(A)-specific ribonu 95.5 0.021 7.2E-07 47.5 5.8 56 149-213 15-70 (100)
392 3ctr_A Poly(A)-specific ribonu 95.3 0.028 9.7E-07 46.9 5.9 54 151-213 7-60 (101)
393 1wwh_A Nucleoporin 35, nucleop 95.2 0.053 1.8E-06 47.2 7.7 63 149-219 23-85 (119)
394 1wwh_A Nucleoporin 35, nucleop 95.2 0.065 2.2E-06 46.6 8.1 65 327-399 23-87 (119)
395 3pq1_A Poly(A) RNA polymerase; 95.1 0.0053 1.8E-07 66.5 1.3 71 135-211 38-108 (464)
396 2l08_A Regulator of nonsense t 94.6 0.035 1.2E-06 46.4 4.6 73 149-221 8-82 (97)
397 2l08_A Regulator of nonsense t 93.4 0.11 3.6E-06 43.5 5.3 71 328-398 9-81 (97)
398 3p3d_A Nucleoporin 53; structu 91.9 0.09 3.1E-06 46.4 3.0 74 149-224 6-93 (132)
399 3pq1_A Poly(A) RNA polymerase; 89.0 0.17 5.8E-06 54.8 2.7 54 328-387 53-106 (464)
400 3p3d_A Nucleoporin 53; structu 88.9 0.4 1.4E-05 42.3 4.5 73 329-403 8-94 (132)
401 3d45_A Poly(A)-specific ribonu 69.9 7.1 0.00024 42.8 7.1 56 328-392 440-495 (507)
402 3d45_A Poly(A)-specific ribonu 65.4 8.8 0.0003 42.1 6.7 55 150-213 440-494 (507)
403 4eyt_A Telomerase associated p 32.2 2E+02 0.0067 23.1 7.8 58 147-212 9-66 (129)
404 3ukw_C Bimax1 peptide; arm rep 28.9 27 0.00092 20.8 1.5 22 569-594 6-27 (28)
405 2pk2_A Cyclin-T1, protein TAT; 28.5 12 0.00041 39.0 0.0 13 339-351 228-240 (358)
406 4eyt_A Telomerase associated p 21.9 3.1E+02 0.011 22.0 7.4 55 328-390 12-66 (129)
407 4e8u_A Putative uncharacterize 20.1 1.5E+02 0.005 27.2 5.5 50 329-381 13-73 (172)
No 1
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=6.3e-41 Score=350.51 Aligned_cols=249 Identities=20% Similarity=0.312 Sum_probs=213.2
Q ss_pred hccCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCC
Q 005712 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (681)
Q Consensus 145 ~~~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v 224 (681)
......++|||+|||+++|+++|+++|++||+|..|+|+++..+ ++|||||+|.+.++|.+||+ +++..|.|+.|.|
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v 112 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKVVGQNEIIV 112 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEE
Confidence 34457899999999999999999999999999999999998543 58999999999999999995 8999999999999
Q ss_pred CCCCCCCcceeccccCcccHHHHHHHHhhcC-ccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeC
Q 005712 225 APSEDNDTLFVGNICNTWTKEAIKQKLKDYG-VEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFG 303 (681)
Q Consensus 225 ~~~~~~~~L~VgnLp~~~te~~L~~~F~~~G-~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g 303 (681)
.++ ..++|||+|||..+++++|+++|..+| . |..|.++.+. .+.++|||||+|.+.++|.+|+..|++..+
T Consensus 113 ~~~-~~~~l~v~nlp~~~t~~~l~~~f~~~G~~--i~~v~i~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--- 184 (292)
T 2ghp_A 113 SHL-TECTLWMTNFPPSYTQRNIRDLLQDINVV--ALSIRLPSLR--FNTSRRFAYIDVTSKEDARYCVEKLNGLKI--- 184 (292)
T ss_dssp EEC-CSCEEEEECCCTTCCHHHHHHHHHHTTCC--CCEEECC---------CCEEEEECSSHHHHHHHHHHHTTCEE---
T ss_pred EEC-CCCEEEEECCCCCCCHHHHHHHHHHhCCC--eEEEEEEeCC--CCCcceEEEEEECCHHHHHHHHHHhCCCEe---
Confidence 876 578999999999999999999999999 8 9999999874 478899999999999999999999999888
Q ss_pred CCCccceecccCCCCCCChh--hcccceeeeecCCCCC-CCHHHHHhhhcccCcEEEEEEeecCC-CCCcceEEEEEeCC
Q 005712 304 HPERTVKVAFAEPLREPDPE--IMAHVKTVFLDGVPPH-WKENQIRDQIKGYGDVIRIVLARNMS-TAKRKDYGFIDFST 379 (681)
Q Consensus 304 ~~gr~l~v~~a~~~~~~~~~--~~~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~v~~v~i~~d~~-~g~~rG~aFV~F~~ 379 (681)
.++.|.|.++.+....... .....++|||+|||.. +|+++|+++|++||.|..|.|+.+.. |+.++|||||+|.+
T Consensus 185 -~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~ 263 (292)
T 2ghp_A 185 -EGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFEN 263 (292)
T ss_dssp -TTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESS
T ss_pred -CCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCC
Confidence 6899999999876554332 3445689999999999 99999999999999999999999876 59999999999999
Q ss_pred HHHHHHHHHHhCCceecCCeeEEEEEe
Q 005712 380 HEAAVACINAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 380 ~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (681)
.++|.+|+ .|||..|.|+.|.|.++.
T Consensus 264 ~~~A~~A~-~l~g~~~~g~~i~V~~a~ 289 (292)
T 2ghp_A 264 KDSAERAL-QMNRSLLGNREISVSLAD 289 (292)
T ss_dssp HHHHHHHG-GGTTEEETTEEEEEEECC
T ss_pred HHHHHHHH-HhcCCEECCcEEEEEEec
Confidence 99999999 999999999998888753
No 2
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=2.6e-40 Score=344.50 Aligned_cols=242 Identities=19% Similarity=0.307 Sum_probs=223.4
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
..+++|||+|||.++|+++|+++|++|| |..|++ ++++|||||+|.+.++|.+|++.|++..|.|+.|.|..+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 92 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ 92 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec
Confidence 3678999999999999999999999999 999988 467899999999999999999999999999999999999
Q ss_pred CCCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCCc
Q 005712 228 EDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307 (681)
Q Consensus 228 ~~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr 307 (681)
...++|||+|||+.+|+++|+++|+.+|. |..+.++.+. .++.++|||||+|.+.++|.+|+..|++..+ .++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~--i~~~~i~~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~----~g~ 165 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGS--LERCFLVYSE-RTGQSKGYGFAEYMKKDSAARAKSDLLGKPL----GPR 165 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSC--EEEEEEEECT-TTCCEEEEEEEEESSHHHHHHHHHHHTTCEE----TTE
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCC--eeEEEEEeeC-CCCccceEEEEEECCHHHHHHHHHHhCCCEe----CCc
Confidence 99999999999999999999999999998 9999998873 6889999999999999999999999999887 689
Q ss_pred cceecccCCCCCCChhhcccceeeeecCCCCCC-CHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHH
Q 005712 308 TVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHW-KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386 (681)
Q Consensus 308 ~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~-t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~A 386 (681)
.|.|.++.+...... ....++|||+|||..+ |+++|+++|++||.|..|.|+.+. +|.++|+|||+|.+.++|.+|
T Consensus 166 ~i~v~~a~~~~~~~~--~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A 242 (284)
T 3smz_A 166 TLYVHWTDAGQLTPA--LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEA 242 (284)
T ss_dssp ECEEEECCGGGCCTT--TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHH
T ss_pred EEEEEECCCCCCCcc--cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHH
Confidence 999999987543322 2356899999999995 999999999999999999999986 789999999999999999999
Q ss_pred HHHhCCceecCCeeEEEEEe
Q 005712 387 INAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 387 i~~lng~~~~g~~i~v~~~~ 406 (681)
+..|||..|.|+.|.|.++.
T Consensus 243 ~~~l~g~~~~g~~l~v~~a~ 262 (284)
T 3smz_A 243 QQQADGLSLGGSHLRVSFCA 262 (284)
T ss_dssp HHHHTTCEETTEECEEEECC
T ss_pred HHHhCCCccCCeEEEEEEec
Confidence 99999999999999888763
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.96 E-value=1.8e-29 Score=251.46 Aligned_cols=181 Identities=26% Similarity=0.421 Sum_probs=152.3
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
.+.+||||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|.+.++|.+||+.+++..+.|+.|.+..+
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999988766
Q ss_pred CC--------CCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCC
Q 005712 228 ED--------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD 299 (681)
Q Consensus 228 ~~--------~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~ 299 (681)
.. ..+|||+|||+.+|+++|+++|++||. |..|+|+.+ .+.++|||||+|.+.++|.+|++.||+..
T Consensus 93 ~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~--i~~~~i~~d---~~~~~g~~fV~f~~~~~a~~Ai~~lng~~ 167 (213)
T 4f02_A 93 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN--ILSCKVVCD---ENGSKGYGFVHFETQEAAERAIEKMNGML 167 (213)
T ss_dssp CCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSC--EEEEEEEEE---TTEEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred cccccccccccccceECCcccccHHHHHHHHHhhcCC--eEEEEeecc---CCCCceEEEEEeCCHHHHHHHHHHhCCCE
Confidence 53 468999999999999999999999998 999999987 34579999999999999999999999998
Q ss_pred eeeCCCCccceecccCCCCCCChhhcccceeeeecCCC
Q 005712 300 VVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVP 337 (681)
Q Consensus 300 ~~~g~~gr~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp 337 (681)
+ .++.|.|.++.++.............++..++|
T Consensus 168 ~----~g~~i~V~~a~~~~~~~~~~~~~~~~~~p~~~P 201 (213)
T 4f02_A 168 L----NDRKVFVGRFKSRKEREAELGARAKEFYPYDVP 201 (213)
T ss_dssp E----TTEECEEEECCCHHHHHHHHC------------
T ss_pred E----CCEEEEEEEcCCCcccchhhhcccCCCCCCCCC
Confidence 8 689999999987544333333334444444444
No 4
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=2.1e-29 Score=250.59 Aligned_cols=179 Identities=18% Similarity=0.386 Sum_probs=149.7
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~ 228 (681)
..++|||+|||.++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||+.|++..|.|+.|.|..+.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 56799999999999999999999999999999999998899999999999999999999999999999999988764432
Q ss_pred CCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCCcc
Q 005712 229 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 308 (681)
Q Consensus 229 ~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr~ 308 (681)
.... .. .......
T Consensus 107 ~~~~----------~~------------------------------------------~~~~~~~--------------- 119 (216)
T 2qfj_A 107 NIGQ----------AQ------------------------------------------PIIDQLA--------------- 119 (216)
T ss_dssp CCGG----------GH------------------------------------------HHHHHHH---------------
T ss_pred Cccc----------cc------------------------------------------hhhhhhh---------------
Confidence 1100 00 0000000
Q ss_pred ceecccCCCCCCChhhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 005712 309 VKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 388 (681)
Q Consensus 309 l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~ 388 (681)
......++|||+|||..+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|+.
T Consensus 120 --------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 185 (216)
T 2qfj_A 120 --------------EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVS 185 (216)
T ss_dssp --------------HHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred --------------cccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 001124799999999999999999999999999999999998899999999999999999999999
Q ss_pred HhCCceecCCeeEEEEEecc
Q 005712 389 AINNKEFSDGNSKVKLRARL 408 (681)
Q Consensus 389 ~lng~~~~g~~i~v~~~~~~ 408 (681)
.||+..|.|+.|.|.++...
T Consensus 186 ~l~g~~~~g~~i~V~~a~~~ 205 (216)
T 2qfj_A 186 SMNLFDLGGQYLRVGKAVTP 205 (216)
T ss_dssp HHTTCBCSSSBCEEEECSSC
T ss_pred HccCCEeCCcEEEEEEecCC
Confidence 99999999999988876544
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.96 E-value=1e-28 Score=235.62 Aligned_cols=164 Identities=21% Similarity=0.405 Sum_probs=146.8
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~ 228 (681)
++++|||+|||.++|+++|+++|++||+|..|+|++++.+++++|||||+|.+.++|++|++.|++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 56899999999999999999999999999999999998899999999999999999999999999999888876544332
Q ss_pred CCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCCcc
Q 005712 229 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 308 (681)
Q Consensus 229 ~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr~ 308 (681)
...
T Consensus 82 ~~~----------------------------------------------------------------------------- 84 (168)
T 1b7f_A 82 PGG----------------------------------------------------------------------------- 84 (168)
T ss_dssp CCS-----------------------------------------------------------------------------
T ss_pred CCc-----------------------------------------------------------------------------
Confidence 100
Q ss_pred ceecccCCCCCCChhhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 005712 309 VKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 388 (681)
Q Consensus 309 l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~ 388 (681)
. ....++|+|+|||..+++++|+++|++||.|..|.|+++..++.++|||||+|.+.++|.+|+.
T Consensus 85 ----------~-----~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 149 (168)
T 1b7f_A 85 ----------E-----SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 149 (168)
T ss_dssp ----------S-----TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred ----------c-----cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHH
Confidence 0 0123689999999999999999999999999999999998899999999999999999999999
Q ss_pred HhCCceecC--CeeEEEE
Q 005712 389 AINNKEFSD--GNSKVKL 404 (681)
Q Consensus 389 ~lng~~~~g--~~i~v~~ 404 (681)
.|||..|.| +.|+|.+
T Consensus 150 ~l~g~~~~g~~~~l~V~~ 167 (168)
T 1b7f_A 150 ALNNVIPEGGSQPLSVRL 167 (168)
T ss_dssp HHTTCCCTTCSSCCEEEE
T ss_pred HhcCCEecCCCeEEEEEe
Confidence 999999988 8887775
No 6
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.96 E-value=9.4e-29 Score=242.10 Aligned_cols=174 Identities=21% Similarity=0.445 Sum_probs=146.7
Q ss_pred ccCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCC
Q 005712 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (681)
Q Consensus 146 ~~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~ 225 (681)
.....++|||+|||+++|+++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|.+||+. ++..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 344678999999999999999999999999999999999999999999999999999999999986 8888888877554
Q ss_pred CCCCCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCC
Q 005712 226 PSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 305 (681)
Q Consensus 226 ~~~~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~ 305 (681)
.+..... ..
T Consensus 88 ~~~~~~~--------------------------------------~~--------------------------------- 96 (196)
T 1l3k_A 88 RAVSRED--------------------------------------SQ--------------------------------- 96 (196)
T ss_dssp ECCC----------------------------------------------------------------------------
T ss_pred cccCccc--------------------------------------cc---------------------------------
Confidence 3321000 00
Q ss_pred CccceecccCCCCCCChhhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHH
Q 005712 306 ERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVA 385 (681)
Q Consensus 306 gr~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~ 385 (681)
.+......++|||+|||+.+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+
T Consensus 97 ---------------~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 161 (196)
T 1l3k_A 97 ---------------RPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161 (196)
T ss_dssp ---------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred ---------------ccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHH
Confidence 00001123799999999999999999999999999999999998899999999999999999999
Q ss_pred HHHHhCCceecCCeeEEEEEec
Q 005712 386 CINAINNKEFSDGNSKVKLRAR 407 (681)
Q Consensus 386 Ai~~lng~~~~g~~i~v~~~~~ 407 (681)
||.. ++..|.|+.|.|.++..
T Consensus 162 A~~~-~~~~~~G~~i~v~~a~~ 182 (196)
T 1l3k_A 162 IVIQ-KYHTVNGHNCEVRKALS 182 (196)
T ss_dssp HHHC-SCCEETTEECEEEECC-
T ss_pred HHHh-CCcEECCEEEEEEecCC
Confidence 9965 89999999988887533
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.96 E-value=3.5e-28 Score=231.32 Aligned_cols=163 Identities=20% Similarity=0.392 Sum_probs=144.3
Q ss_pred CCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCCC
Q 005712 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED 229 (681)
Q Consensus 150 ~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~~ 229 (681)
+++|||+|||.++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.|++..+.|+.|.|..+..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 68999999999999999999999999999999999988999999999999999999999999999998888765433321
Q ss_pred CCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCCccc
Q 005712 230 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 309 (681)
Q Consensus 230 ~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr~l 309 (681)
..
T Consensus 82 ~~------------------------------------------------------------------------------ 83 (167)
T 1fxl_A 82 SS------------------------------------------------------------------------------ 83 (167)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred Cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred eecccCCCCCCChhhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 005712 310 KVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINA 389 (681)
Q Consensus 310 ~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~ 389 (681)
.....++|+|+|||..+++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|.+|++.
T Consensus 84 --------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 149 (167)
T 1fxl_A 84 --------------ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 149 (167)
T ss_dssp --------------GGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred --------------ccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHH
Confidence 001236799999999999999999999999999999999988999999999999999999999999
Q ss_pred hCCceecCCeeEEEE
Q 005712 390 INNKEFSDGNSKVKL 404 (681)
Q Consensus 390 lng~~~~g~~i~v~~ 404 (681)
|||..|.|+.+.|.+
T Consensus 150 l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 150 LNGQKPSGATEPITV 164 (167)
T ss_dssp HTTCCCTTCSSCCEE
T ss_pred hcCCccCCCccceEE
Confidence 999999998744443
No 8
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.95 E-value=9e-28 Score=239.13 Aligned_cols=168 Identities=21% Similarity=0.329 Sum_probs=149.5
Q ss_pred CCCCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCC
Q 005712 227 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 306 (681)
Q Consensus 227 ~~~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~g 306 (681)
+.+.++|||+|||+++|+++|+++|+++|. |..|+|+++. .+++++|||||+|.+.++|.+|++.+++..+ .+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~--I~~v~i~~d~-~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~----~g 84 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGP--ILSIRVCRDM-ITRRSLGYAYVNFQQPADAERALDTMNFDVI----KG 84 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSC--EEEEEEEECT-TTCCEEEEEEEEESSHHHHHHHHHHHTTCEE----TT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCC--EEEEEEeccc-CCCCccccccceeCCHHHHHHHHHHhhhhhc----CC
Confidence 445689999999999999999999999998 9999999984 6899999999999999999999999999887 68
Q ss_pred ccceecccCCCCCCChhhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHH
Q 005712 307 RTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386 (681)
Q Consensus 307 r~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~A 386 (681)
+.|++.++..... ......++|||+|||+.+|+++|+++|++||.|..|.|+++. +.++|||||+|.+.++|.+|
T Consensus 85 ~~i~~~~~~~~~~---~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~A 159 (213)
T 4f02_A 85 KPVRIMWSQRDPS---LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERA 159 (213)
T ss_dssp EECEEEECCCCTH---HHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHH
T ss_pred ccccccccccccc---ccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHH
Confidence 9999988765432 223345789999999999999999999999999999999984 45899999999999999999
Q ss_pred HHHhCCceecCCeeEEEEEe
Q 005712 387 INAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 387 i~~lng~~~~g~~i~v~~~~ 406 (681)
|+.|||..|.|+.|.|.++.
T Consensus 160 i~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 160 IEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp HHHHTTCEETTEECEEEECC
T ss_pred HHHhCCCEECCEEEEEEEcC
Confidence 99999999999999998754
No 9
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.2e-27 Score=225.49 Aligned_cols=164 Identities=19% Similarity=0.379 Sum_probs=150.9
Q ss_pred CcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCCccce
Q 005712 231 DTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVK 310 (681)
Q Consensus 231 ~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr~l~ 310 (681)
++|||+|||.++|+++|+++|+++|. |..|.++.+. ++.++|+|||+|.+.++|.+|+..|++..+ .++.|.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~--i~~v~i~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~----~g~~i~ 72 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGP--IANIKIMIDK--NNKNVNYAFVEYHQSHDANIALQTLNGKQI----ENNIVK 72 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSC--EEEEEEECCC--C-CCEEEEEEEESSHHHHHHHHHHHTTCEE----TTEECE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCC--eEEEEEEECC--CCCCCCEEEEEeCCHHHHHHHHHHcCCCcc----CCCeeE
Confidence 57999999999999999999999998 9999999884 578999999999999999999999999988 689999
Q ss_pred ecccCCCCCCChhhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 005712 311 VAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390 (681)
Q Consensus 311 v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~l 390 (681)
|.++.+..... ....++|||+|||..+|+++|+++|++||.|..+.++.+..++.++|||||+|.+.++|.+|+..|
T Consensus 73 v~~~~~~~~~~---~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 149 (166)
T 3md3_A 73 INWAFQSQQSS---SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM 149 (166)
T ss_dssp EEECCCCCCCC---CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHH
T ss_pred EEEcCCCCCCC---CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh
Confidence 99987655432 234689999999999999999999999999999999999889999999999999999999999999
Q ss_pred CCceecCCeeEEEEE
Q 005712 391 NNKEFSDGNSKVKLR 405 (681)
Q Consensus 391 ng~~~~g~~i~v~~~ 405 (681)
||..|.|+.|.|.++
T Consensus 150 ~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 150 QGQDLNGRPLRINWA 164 (166)
T ss_dssp TTCEETTEECEEEES
T ss_pred CCCccCCcEEEEEec
Confidence 999999999999875
No 10
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.95 E-value=4.1e-27 Score=225.77 Aligned_cols=162 Identities=28% Similarity=0.511 Sum_probs=143.8
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCC--CccceEEEEecchhHHHHHHHhcCCCeee---ccccC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTN--RNKGYAFVKFANKEHAKRALTEMKNPVIC---GKRCG 223 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg--~skG~aFVeF~~~e~A~~Al~~l~g~~l~---Gr~i~ 223 (681)
+.++|||+|||+++|+++|+++|++||+|.+|+|++++.++ +++|||||+|.+.++|++|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999999998887 89999999999999999999999998776 44444
Q ss_pred CCCCC-------CCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhC
Q 005712 224 TAPSE-------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQ 296 (681)
Q Consensus 224 v~~~~-------~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~ 296 (681)
+..+. ..++|||+|||..+|+++|+++|+++|. |..+.++.+. ++.++|||||+|.+.++|.+|++.|+
T Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~--i~~v~~~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~ 157 (175)
T 3nmr_A 82 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ--IEECRILRGP--DGLSRGCAFVTFTTRAMAQTAIKAMH 157 (175)
T ss_dssp EEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSC--EEEEEEEECT--TSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred EccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCC--EEEEEEEECC--CCCEEEEEEEEECCHHHHHHHHHHhc
Confidence 43332 4578999999999999999999999998 9999999883 68899999999999999999999999
Q ss_pred CCCeeeCCCCccceecccC
Q 005712 297 KPDVVFGHPERTVKVAFAE 315 (681)
Q Consensus 297 g~~~~~g~~gr~l~v~~a~ 315 (681)
+..+..+ .+++|.|.|++
T Consensus 158 g~~~~~g-~~~~l~V~~ad 175 (175)
T 3nmr_A 158 QAQTMEG-CSSPMVVKFAD 175 (175)
T ss_dssp TSCCCTT-CSSCCEEEECC
T ss_pred CCcccCC-CCCCeEEEecC
Confidence 9887533 25899998874
No 11
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.94 E-value=3.7e-27 Score=224.60 Aligned_cols=159 Identities=24% Similarity=0.479 Sum_probs=146.4
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~ 228 (681)
++++|||+|||+++|+++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|.+||+. +..|.|+.|.+..+.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 568999999999999999999999999999999999999999999999999999999999985 578999999887765
Q ss_pred C------CCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeee
Q 005712 229 D------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVF 302 (681)
Q Consensus 229 ~------~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~ 302 (681)
. .++|||+|||..+++++|+++|+++|. |..+.++.+. .++.++|||||+|.+.++|.+|++ +++..+
T Consensus 80 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~--i~~~~i~~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~-- 153 (167)
T 2cjk_A 80 PRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGT--IIDAQLMLDK-DTGQSRGFGFVTYDSADAVDRVCQ-NKFIDF-- 153 (167)
T ss_dssp CHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSC--CSEEECCCSS-SSSTTSEEEEEEESSHHHHHHHHH-CSEECS--
T ss_pred chhhccCCCeEEECCCCCCCCHHHHHHHHHhCcc--EEEEEEEEcC-CCCccceEEEEEECCHHHHHHHHh-CCCEEe--
Confidence 4 578999999999999999999999998 9999999884 579999999999999999999998 777766
Q ss_pred CCCCccceecccCCC
Q 005712 303 GHPERTVKVAFAEPL 317 (681)
Q Consensus 303 g~~gr~l~v~~a~~~ 317 (681)
.++.|.|.++.++
T Consensus 154 --~g~~i~V~~a~pk 166 (167)
T 2cjk_A 154 --KDRKIEIKRAEPR 166 (167)
T ss_dssp --SSSCEEEEECCCC
T ss_pred --CCeEEEEeecCCC
Confidence 6899999999874
No 12
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.94 E-value=6.7e-27 Score=222.14 Aligned_cols=158 Identities=25% Similarity=0.438 Sum_probs=145.5
Q ss_pred CEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCC--
Q 005712 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE-- 228 (681)
Q Consensus 151 ~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~-- 228 (681)
++|||+|||.++|+++|+++|++||.|.+|+|++++ +++++|||||+|.+.++|.+|++.|++..+.|+.|.+..+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 589999999999999999999999999999999985 47899999999999999999999999999999999886543
Q ss_pred ------CCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeee
Q 005712 229 ------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVF 302 (681)
Q Consensus 229 ------~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~ 302 (681)
..++|||+|||..+|+++|+++|+++|. |..+.++.+. .++.++|+|||+|.+.++|.+|+..|++..+
T Consensus 80 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~--i~~~~i~~~~-~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-- 154 (166)
T 3md3_A 80 QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPS--YLSGHVMWDM-QTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL-- 154 (166)
T ss_dssp CCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTT--EEEEEEEECT-TTCCEEEEEEEEESCHHHHHHHHHHHTTCEE--
T ss_pred CCCCCCCCceEEECCCCCCCCHHHHHHHHhccCC--eeEEEEEecC-CCCCcceEEEEEeCCHHHHHHHHHHhCCCcc--
Confidence 3468999999999999999999999998 9999999884 6789999999999999999999999999987
Q ss_pred CCCCccceecccCC
Q 005712 303 GHPERTVKVAFAEP 316 (681)
Q Consensus 303 g~~gr~l~v~~a~~ 316 (681)
.++.|+|.|+.+
T Consensus 155 --~g~~i~v~~a~~ 166 (166)
T 3md3_A 155 --NGRPLRINWAAK 166 (166)
T ss_dssp --TTEECEEEESCC
T ss_pred --CCcEEEEEecCC
Confidence 689999999863
No 13
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.94 E-value=4.1e-26 Score=218.79 Aligned_cols=168 Identities=23% Similarity=0.418 Sum_probs=147.2
Q ss_pred CCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCC--CcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCC
Q 005712 229 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEG--LSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 306 (681)
Q Consensus 229 ~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg--~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~g 306 (681)
+.++|||+|||+++|+++|+++|+++|. |..|+++++. .++ +++|||||+|.+.++|.+|++.|++..+..+ ..
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~--i~~v~i~~~~-~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~-~~ 77 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGA--VYEINVLRDR-SQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPG-MH 77 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSC--EEEEEEEEEC-SSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTT-CS
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCC--EEEEEEEecC-CCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccC-Cc
Confidence 4579999999999999999999999998 9999999884 444 8999999999999999999999999877433 36
Q ss_pred ccceecccCCCCCCChhhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHH
Q 005712 307 RTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVAC 386 (681)
Q Consensus 307 r~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~A 386 (681)
+.+.+.++.+..... ...++|||+|||..+|+++|+++|++||.|..|.|+++. ++.++|||||+|.+.++|.+|
T Consensus 78 ~~~~~~~~~~~~~~~----~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A 152 (175)
T 3nmr_A 78 HPIQMKPADSEKNNA----VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTA 152 (175)
T ss_dssp SCCEEEECGGGCCSC----GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHH
T ss_pred cceEEcccccccccc----CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHH
Confidence 777777776544332 246799999999999999999999999999999999985 689999999999999999999
Q ss_pred HHHhCCceecC---CeeEEEEE
Q 005712 387 INAINNKEFSD---GNSKVKLR 405 (681)
Q Consensus 387 i~~lng~~~~g---~~i~v~~~ 405 (681)
+..|||..+.+ +.|.|.++
T Consensus 153 ~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 153 IKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp HHHHTTSCCCTTCSSCCEEEEC
T ss_pred HHHhcCCcccCCCCCCeEEEec
Confidence 99999988874 88888764
No 14
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.94 E-value=5.8e-26 Score=222.56 Aligned_cols=179 Identities=18% Similarity=0.381 Sum_probs=142.3
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhc----C-------CeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCee
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERI----G-------EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI 217 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~----G-------~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l 217 (681)
.+++|||+|||+++|+++|+++|++| | .|..+.+ ++++|||||+|.+.++|++|| .|++..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 57899999999999999999999999 5 5666655 456899999999999999999 8999999
Q ss_pred eccccCCCCCCCCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 005712 218 CGKRCGTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQK 297 (681)
Q Consensus 218 ~Gr~i~v~~~~~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g 297 (681)
.|+.|.|..+......--. .. .. .
T Consensus 76 ~g~~i~v~~~~~~~~~~~~-----------------------------~~--~~-------------------------~ 99 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGM-----------------------------SE--NP-------------------------S 99 (198)
T ss_dssp TTEEEEEECCCCCCCCCCS-----------------------------SS--CS-------------------------S
T ss_pred cCceEEEeCCCCCCCCCCC-----------------------------cC--CC-------------------------c
Confidence 9999887665432110000 00 00 0
Q ss_pred CCeeeCCCCccceecccCCCCCCChhhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEe
Q 005712 298 PDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDF 377 (681)
Q Consensus 298 ~~~~~g~~gr~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F 377 (681)
... .+ ..........++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|
T Consensus 100 ~~~----~~------------~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f 163 (198)
T 2yh0_A 100 VYV----PG------------VVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEY 163 (198)
T ss_dssp CCC----TT------------SSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEE
T ss_pred CCC----CC------------CccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEE
Confidence 000 00 00001112458999999999999999999999999999999999988999999999999
Q ss_pred CCHHHHHHHHHHhCCceecCCeeEEEEEe
Q 005712 378 STHEAAVACINAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 378 ~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (681)
.+.++|.+|++.|||..|.|+.|.|.++.
T Consensus 164 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 192 (198)
T 2yh0_A 164 VDINVTDQAIAGLNGMQLGDKKLLVQRAS 192 (198)
T ss_dssp SSSSHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 99999999999999999999998888753
No 15
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.94 E-value=2.3e-26 Score=219.09 Aligned_cols=162 Identities=19% Similarity=0.382 Sum_probs=144.9
Q ss_pred CCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCCcc
Q 005712 229 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 308 (681)
Q Consensus 229 ~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr~ 308 (681)
+.++|||+|||+++|+++|+++|+++|. |..|.++++. .++.++|||||+|.+.++|.+|+.. ...+ .++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~--i~~v~i~~~~-~~g~~~g~afV~f~~~~~a~~A~~~--~~~~----~g~~ 72 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGT--VTDLKIMKDP-ATGRSRGFGFLSFEKPSSVDEVVKT--QHIL----DGKV 72 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCC--EEEEECCCCT-TTSSCCSCEEEEESSTHHHHHHHHS--CCEE----TTEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCC--EEEEEEEECC-CCCCccceEEEEEccHHHHHHHHhc--cccc----CCeE
Confidence 3579999999999999999999999998 9999999884 6889999999999999999999984 3333 5788
Q ss_pred ceecccCCCCCCChhhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 005712 309 VKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 388 (681)
Q Consensus 309 l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~ 388 (681)
|.+.++.+.. .....++|||+|||..+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|++
T Consensus 73 i~v~~~~~~~-----~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 147 (167)
T 2cjk_A 73 IDPKRAIPRD-----EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ 147 (167)
T ss_dssp CCCEECCCHH-----HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH
T ss_pred cccccccchh-----hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh
Confidence 8888876532 23346799999999999999999999999999999999998899999999999999999999997
Q ss_pred HhCCceecCCeeEEEEE
Q 005712 389 AINNKEFSDGNSKVKLR 405 (681)
Q Consensus 389 ~lng~~~~g~~i~v~~~ 405 (681)
||+..|.|+.|.|.++
T Consensus 148 -~~~~~~~g~~i~V~~a 163 (167)
T 2cjk_A 148 -NKFIDFKDRKIEIKRA 163 (167)
T ss_dssp -CSEECSSSSCEEEEEC
T ss_pred -CCCEEeCCeEEEEeec
Confidence 9999999999988875
No 16
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.93 E-value=2.1e-25 Score=231.45 Aligned_cols=249 Identities=14% Similarity=0.216 Sum_probs=149.4
Q ss_pred cCCCCEEEEcCCCccCCHHHHH----HHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeecccc
Q 005712 147 IKKEHEIFIGGLDRDATQEDVR----KVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRC 222 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~----~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i 222 (681)
...+++|||+|||.++|+++|+ ++|++||.|..|+|++ +++++|||||+|.+.++|.+||+.|++..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4578999999999999999977 8999999999999975 68899999999999999999999999999999999
Q ss_pred CCCCCCCCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEE----eC-CHHHHHHHHHHhCC
Q 005712 223 GTAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVM----FS-CHVDAMAAYKRLQK 297 (681)
Q Consensus 223 ~v~~~~~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~----F~-s~e~A~~Al~~l~g 297 (681)
.|..+............ ...+......-..... ...................+-+. -. ....+...+..+.+
T Consensus 83 ~v~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 159 (282)
T 3pgw_A 83 RIQYAKTDSDIIAKMKG-TFVERDRKREKRKPKS--QETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPG 159 (282)
T ss_pred EEEEeccCcchhhhhcC-Ccccchhhhhhhhccc--cchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCC
Confidence 99877544322111110 0000000000000000 00000000000000000000000 00 00000000000000
Q ss_pred CCeeeCCCCc----cc-eeccc-------CCCC-----CCChhhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEE
Q 005712 298 PDVVFGHPER----TV-KVAFA-------EPLR-----EPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVL 360 (681)
Q Consensus 298 ~~~~~g~~gr----~l-~v~~a-------~~~~-----~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i 360 (681)
..-.....+. .+ ...+. .... ..........++|||+|||..+|+++|+++|++||.|..|.|
T Consensus 160 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~ 239 (282)
T 3pgw_A 160 QPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRL 239 (282)
T ss_pred CCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEE
Confidence 0000000000 00 00000 0000 000012234688999999999999999999999999999999
Q ss_pred eecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec-CCeeEEEEEe
Q 005712 361 ARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS-DGNSKVKLRA 406 (681)
Q Consensus 361 ~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~-g~~i~v~~~~ 406 (681)
+.+. +|||||+|.+.++|.+||..|||..|. |+.|+|.+++
T Consensus 240 ~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 240 VPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred ecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 8663 689999999999999999999999999 9999998863
No 17
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.93 E-value=1.5e-25 Score=214.46 Aligned_cols=160 Identities=19% Similarity=0.334 Sum_probs=141.4
Q ss_pred CCCcceeccccCcccHHHHHHHHhhc----Ccc-----ceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCC
Q 005712 229 DNDTLFVGNICNTWTKEAIKQKLKDY----GVE-----GVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPD 299 (681)
Q Consensus 229 ~~~~L~VgnLp~~~te~~L~~~F~~~----G~~-----~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~ 299 (681)
+.++|||+|||..+|+++|+++|+++ |.. .|..+.+. +++|||||+|.+.++|.+|+ .|++..
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~-------~~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-------QDKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE-------TTTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec-------CCCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 45799999999999999999999999 510 25555554 34899999999999999999 899988
Q ss_pred eeeCCCCccceecccCCCCCCChhhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCC
Q 005712 300 VVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST 379 (681)
Q Consensus 300 ~~~g~~gr~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~ 379 (681)
+ .++.|.|.++....... ..++|||+|||..+|+++|+++|++||.|..|.|+++..++.++|||||+|.+
T Consensus 75 ~----~g~~i~v~~~~~~~~~~-----~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~ 145 (172)
T 2g4b_A 75 F----QGQSLKIRRPHDYQPLP-----GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVD 145 (172)
T ss_dssp E----TTEECEEECCSSCCCCT-----TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESS
T ss_pred e----cCceeeecCCcccCCCC-----CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCC
Confidence 7 68999999877644322 36899999999999999999999999999999999998899999999999999
Q ss_pred HHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 380 HEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 380 ~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
.++|.+|++.|||..|.|+.|.|.++
T Consensus 146 ~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 146 INVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 99999999999999999999998864
No 18
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.93 E-value=2.8e-25 Score=219.49 Aligned_cols=155 Identities=19% Similarity=0.245 Sum_probs=133.7
Q ss_pred CCCEEEEcCCC-ccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 149 KEHEIFIGGLD-RDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 149 ~~~tVfV~NLp-~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
++++|||+||| ..+|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|++||+.||+..|.|+.|.|..+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 57899999999 89999999999999999999999865 4799999999999999999999999999999887643
Q ss_pred C-------------------------------------------CCCcceeccccCcccHHHHHHHHhhcCccce--EEe
Q 005712 228 E-------------------------------------------DNDTLFVGNICNTWTKEAIKQKLKDYGVEGV--ENI 262 (681)
Q Consensus 228 ~-------------------------------------------~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v--~~i 262 (681)
. +.++|||+|||+++|+++|+++|+++|. | ..+
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~--v~~~~v 155 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGV--KRPTSV 155 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTC--CCCSEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCC--cceEEE
Confidence 2 1236999999999999999999999998 7 889
Q ss_pred eeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCCccceecc
Q 005712 263 NLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAF 313 (681)
Q Consensus 263 ~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr~l~v~~ 313 (681)
+++.+. +.++|+|||+|.+.++|.+|+..||+..+.......++.|++
T Consensus 156 ~~~~~~---~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~ 203 (205)
T 3tyt_A 156 KVFSGK---SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKL 203 (205)
T ss_dssp EECSCC---SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEE
T ss_pred EEEcCC---CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEe
Confidence 988762 556799999999999999999999999884333334555544
No 19
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.92 E-value=3.2e-25 Score=212.22 Aligned_cols=153 Identities=23% Similarity=0.439 Sum_probs=139.8
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhc----C-------CeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCe
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERI----G-------EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPV 216 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~----G-------~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~ 216 (681)
++.++|||+|||+++|+++|+++|++| | .|..+++. +++|||||+|.+.++|.+|| .|++..
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 356899999999999999999999999 6 77777774 45899999999999999999 899999
Q ss_pred eeccccCCCCCCC------CCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHH
Q 005712 217 ICGKRCGTAPSED------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMA 290 (681)
Q Consensus 217 l~Gr~i~v~~~~~------~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~ 290 (681)
|.|+.|.|..+.. .++|||+|||..+|+++|+++|+++|. |..+.++.+. .++.++|+|||+|.+.++|.+
T Consensus 75 ~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~--v~~v~i~~~~-~~g~~~g~afV~f~~~~~A~~ 151 (172)
T 2g4b_A 75 FQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGP--LKAFNLVKDS-ATGLSKGYAFCEYVDINVTDQ 151 (172)
T ss_dssp ETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSC--EEEEEEEECT-TTCSEEEEEEEEESSTTHHHH
T ss_pred ecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCC--ceEEEEEecC-CCCCcceEEEEEeCCHHHHHH
Confidence 9999999876654 489999999999999999999999998 9999999884 588999999999999999999
Q ss_pred HHHHhCCCCeeeCCCCccceeccc
Q 005712 291 AYKRLQKPDVVFGHPERTVKVAFA 314 (681)
Q Consensus 291 Al~~l~g~~~~~g~~gr~l~v~~a 314 (681)
|+..|++..+ .++.|.|.+|
T Consensus 152 A~~~l~g~~~----~g~~l~V~~A 171 (172)
T 2g4b_A 152 AIAGLNGMQL----GDKKLLVQRA 171 (172)
T ss_dssp HHHHHTTCEE----TTEECEEEEC
T ss_pred HHHHcCCCEE----CCeEEEEEeC
Confidence 9999999988 6899999886
No 20
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.92 E-value=3.7e-25 Score=227.24 Aligned_cols=162 Identities=25% Similarity=0.430 Sum_probs=150.5
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
....++|||+|||+++|+++|+++|++||.|..|+|.+ ++|||||+|.+.++|.+|+..|++..|.|+.|.|..
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 34668999999999999999999999999999999964 479999999999999999999999999999999999
Q ss_pred CCCCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCC
Q 005712 227 SEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPE 306 (681)
Q Consensus 227 ~~~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~g 306 (681)
+...++|||+|||..+|+++|+++|+.||. |..|.++.+ .++.++|||||+|.+.++|.+|+..|++..++....+
T Consensus 93 a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~--i~~v~i~~~--~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~ 168 (261)
T 3sde_A 93 ATHGAALTVKNLSPVVSNELLEQAFSQFGP--VEKAVVVVD--DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTP 168 (261)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSC--EEEEEEEEE--TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSC
T ss_pred cccCCcccccCCCCCCCHHHHHHHHHhcCC--eEEEEeeeC--CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCC
Confidence 999999999999999999999999999998 999999988 4899999999999999999999999988777776678
Q ss_pred ccceecccCCCC
Q 005712 307 RTVKVAFAEPLR 318 (681)
Q Consensus 307 r~l~v~~a~~~~ 318 (681)
++|.|.++.+..
T Consensus 169 r~i~v~~~~~~~ 180 (261)
T 3sde_A 169 RPVIVEPMEQFD 180 (261)
T ss_dssp CBCEEEECCCEE
T ss_pred ceEEEeeccccC
Confidence 999999987643
No 21
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.92 E-value=3.2e-25 Score=213.06 Aligned_cols=165 Identities=16% Similarity=0.240 Sum_probs=142.0
Q ss_pred CCCCCCCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeC
Q 005712 224 TAPSEDNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFG 303 (681)
Q Consensus 224 v~~~~~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g 303 (681)
+......++|||+|||..+|+++|+++|..+|. +..+. +.+ ..++.++|||||+|.+.++|.+|+ .|++..+
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~--~~~~~-~~~-~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~--- 78 (175)
T 1fje_B 7 GSESTTPFNLFIGNLNPNKSVAELKVAISELFA--KNDLA-VVD-VRTGTNRKFGYVDFESAEDLEKAL-ELTGLKV--- 78 (175)
T ss_dssp SSSCSSSEEEEEECCCTTSCHHHHHHHHHHHHH--HHTCC-CCE-EEEETTTTEEEEEESSHHHHHHHH-HGGGEEE---
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCC--cceEE-EEE-CCCCccccEEEEEECCHHHHHHHH-hcCCCEe---
Confidence 344556789999999999999999999999997 55533 333 257889999999999999999999 5999888
Q ss_pred CCCccceecccCCCCCCChhhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHH
Q 005712 304 HPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383 (681)
Q Consensus 304 ~~gr~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A 383 (681)
.++.|.|.++.+..... ....++|||+|||..+|+++|+++|++||.|..+ ..++.++|||||+|.+.++|
T Consensus 79 -~g~~l~v~~~~~~~~~~---~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A 149 (175)
T 1fje_B 79 -FGNEIKLEKPKGRDSKK---VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADA 149 (175)
T ss_dssp -TTEEEEEECCCCSSCST---TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHH
T ss_pred -CCeEEEEecCCCccccc---cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHH
Confidence 58999999998754432 2356899999999999999999999999988766 45788999999999999999
Q ss_pred HHHHHHhCCceecCCeeEEEEE
Q 005712 384 VACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 384 ~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
.+|+..|||..|.|+.|.|.++
T Consensus 150 ~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 150 EKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp HHHHHHHTEEEETTEEEEEEEC
T ss_pred HHHHHHhCCCEECCeEEEEEec
Confidence 9999999999999999888875
No 22
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.92 E-value=7.9e-25 Score=216.22 Aligned_cols=157 Identities=14% Similarity=0.179 Sum_probs=135.9
Q ss_pred CCCcceecccc-CcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCCc
Q 005712 229 DNDTLFVGNIC-NTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPER 307 (681)
Q Consensus 229 ~~~~L~VgnLp-~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr 307 (681)
++++|||+||+ +.+|+++|+++|++||. |..|+++++ ++|||||+|.+.++|.+|++.||+..+ .++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~--v~~v~i~~~------~~g~afV~f~~~~~A~~Ai~~lng~~~----~g~ 70 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGN--VEKVKFMKS------KPGAAMVEMADGYAVDRAITHLNNNFM----FGQ 70 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSC--EEEEEECTT------STTCEEEEESSHHHHHHHHHHHTTCEE----TTE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCC--eEEEEEecC------CCCEEEEEECCHHHHHHHHHHhCCCEE----CCc
Confidence 46799999999 89999999999999998 999999875 379999999999999999999999988 589
Q ss_pred cceecccCCCCCCC----------h----------------------hhcccceeeeecCCCCCCCHHHHHhhhcccCcE
Q 005712 308 TVKVAFAEPLREPD----------P----------------------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDV 355 (681)
Q Consensus 308 ~l~v~~a~~~~~~~----------~----------------------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v 355 (681)
.|+|.++....... + ......++|||+|||+.+|+++|+++|++||.|
T Consensus 71 ~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v 150 (205)
T 3tyt_A 71 KMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVK 150 (205)
T ss_dssp ECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCC
T ss_pred eEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCc
Confidence 99999886432100 0 001234689999999999999999999999999
Q ss_pred --EEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCe
Q 005712 356 --IRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN 399 (681)
Q Consensus 356 --~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~ 399 (681)
..|+|+.+. +.++|+|||+|++.++|.+||..|||..|.|+.
T Consensus 151 ~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~ 194 (205)
T 3tyt_A 151 RPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPN 194 (205)
T ss_dssp CCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSS
T ss_pred ceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCC
Confidence 899998874 556799999999999999999999999999984
No 23
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.92 E-value=9.9e-26 Score=216.65 Aligned_cols=158 Identities=18% Similarity=0.338 Sum_probs=139.8
Q ss_pred ccCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCC
Q 005712 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (681)
Q Consensus 146 ~~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~ 225 (681)
.....++|||+|||.++|+++|+++|++||.|.. .++++..+++++|||||+|.+.++|.+||+ |++..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 3457889999999999999999999999998766 344555778999999999999999999994 99999999999997
Q ss_pred CCCC--------CCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 005712 226 PSED--------NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQK 297 (681)
Q Consensus 226 ~~~~--------~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g 297 (681)
.+.. .++|||+|||..+|+++|+++|+++|. |..+ ..++.++|+|||+|.+.++|.+|+..|++
T Consensus 87 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~--v~~~------~~~~~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 1fje_B 87 KPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALE--IRLV------SQDGKSKGIAYIEFKSEADAEKNLEEKQG 158 (175)
T ss_dssp CCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSE--EEEE------CSSSSCCSEEEEECSSHHHHHHHHHHHTE
T ss_pred cCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCe--EEEe------cCCCCCceEEEEEECCHHHHHHHHHHhCC
Confidence 7653 478999999999999999999999996 5554 25788999999999999999999999999
Q ss_pred CCeeeCCCCccceecccCCC
Q 005712 298 PDVVFGHPERTVKVAFAEPL 317 (681)
Q Consensus 298 ~~~~~g~~gr~l~v~~a~~~ 317 (681)
..+ .++.|.|.++.++
T Consensus 159 ~~~----~g~~i~v~~a~~k 174 (175)
T 1fje_B 159 AEI----DGRSVSLYYTGEK 174 (175)
T ss_dssp EEE----TTEEEEEEECSSC
T ss_pred CEE----CCeEEEEEecCCC
Confidence 887 6899999999864
No 24
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.91 E-value=2.9e-24 Score=223.12 Aligned_cols=164 Identities=17% Similarity=0.240 Sum_probs=152.1
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
...++|||+|||+++|+++|+++|++||.|..|+|+.+..++.++|||||+|.+.++|.+|++.|++..|.|+.|.|..+
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 35689999999999999999999999999999999999899999999999999999999999999999999999988655
Q ss_pred C---------CCCcceeccccCcc-cHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 005712 228 E---------DNDTLFVGNICNTW-TKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQK 297 (681)
Q Consensus 228 ~---------~~~~L~VgnLp~~~-te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g 297 (681)
. ..++|||+|||..+ ++++|+++|+.||. |..+.|+.+. ++.++|+|||+|.+.++|.+|+..|++
T Consensus 173 ~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~--i~~v~i~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g 248 (284)
T 3smz_A 173 DAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHS--PTFCQLACGQ--DGQLKGFAVLEYETAEMAEEAQQQADG 248 (284)
T ss_dssp CGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSC--CSEEEEEECS--SCCEEEEEEEECSSHHHHHHHHHHHTT
T ss_pred CCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCC--eEEEEEEECC--CCCcccEEEEEeCCHHHHHHHHHHhCC
Confidence 4 35789999999995 99999999999998 9999999873 789999999999999999999999999
Q ss_pred CCeeeCCCCccceecccCCCCC
Q 005712 298 PDVVFGHPERTVKVAFAEPLRE 319 (681)
Q Consensus 298 ~~~~~g~~gr~l~v~~a~~~~~ 319 (681)
..+ .++.|.|.++.+...
T Consensus 249 ~~~----~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 249 LSL----GGSHLRVSFCAPGPP 266 (284)
T ss_dssp CEE----TTEECEEEECCSSSC
T ss_pred Ccc----CCeEEEEEEecCCCc
Confidence 988 689999999987654
No 25
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.91 E-value=7e-24 Score=213.37 Aligned_cols=154 Identities=21% Similarity=0.330 Sum_probs=139.6
Q ss_pred cCCCCEEEEcCCCc-cCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCC
Q 005712 147 IKKEHEIFIGGLDR-DATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (681)
Q Consensus 147 ~~~~~tVfV~NLp~-~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~ 225 (681)
...+++|||+|||+ ++|+++|+++|++||.|..|+|++++ +|||||+|.+.++|++||+.|++..|.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45789999999999 99999999999999999999998873 7899999999999999999999999999999885
Q ss_pred CCCC-----------------------------------------CCcceeccccCcccHHHHHHHHhhcC-ccceEEee
Q 005712 226 PSED-----------------------------------------NDTLFVGNICNTWTKEAIKQKLKDYG-VEGVENIN 263 (681)
Q Consensus 226 ~~~~-----------------------------------------~~~L~VgnLp~~~te~~L~~~F~~~G-~~~v~~i~ 263 (681)
.+.. .++|||+|||..+++++|+++|+++| . |..|+
T Consensus 106 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~--i~~v~ 183 (229)
T 2adc_A 106 LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGV--VKGFK 183 (229)
T ss_dssp CCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCC--EEEEE
T ss_pred EecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCC--eeEEE
Confidence 4431 36799999999999999999999999 8 99999
Q ss_pred eccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCC-CccceecccCCC
Q 005712 264 LVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP-ERTVKVAFAEPL 317 (681)
Q Consensus 264 i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~-gr~l~v~~a~~~ 317 (681)
++.+ ++|+|||+|.+.++|.+|+..|++..+ . ++.|+|.|+.+.
T Consensus 184 i~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~----~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 184 FFQK------DRKMALIQMGSVEEAVQALIDLHNHDL----GENHHLRVSFSKST 228 (229)
T ss_dssp ECSS------STTCEEEEESSHHHHHHHHHHHTTCBS----SSSCBCEEEECSSC
T ss_pred EEEC------CCcEEEEEECCHHHHHHHHHHHCCCcc----CCCCeEEEEEecCC
Confidence 9764 378999999999999999999999888 4 899999998763
No 26
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.91 E-value=1.2e-23 Score=211.56 Aligned_cols=164 Identities=17% Similarity=0.294 Sum_probs=142.7
Q ss_pred CCCCCCcceeccccC-cccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCC
Q 005712 226 PSEDNDTLFVGNICN-TWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGH 304 (681)
Q Consensus 226 ~~~~~~~L~VgnLp~-~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~ 304 (681)
...++++|||+|||+ .+++++|+++|+++|. |..|+++.+. +|||||+|.+.++|.+|++.|++..+
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~--i~~v~i~~~~------~g~afV~F~~~~~A~~Ai~~l~g~~~---- 97 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGD--VQRVKILFNK------KENALVQMADGNQAQLAMSHLNGHKL---- 97 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTC--EEEEEECCTT------SCCEEEEESCHHHHHHHHHHHTTCBC----
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCC--eEEEEEEECC------CCEEEEEECCHHHHHHHHHHhCCCeE----
Confidence 345678999999999 9999999999999998 9999999873 78999999999999999999999888
Q ss_pred CCccceecccCCCCCCCh------------------------------hhcccceeeeecCCCCCCCHHHHHhhhcccC-
Q 005712 305 PERTVKVAFAEPLREPDP------------------------------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYG- 353 (681)
Q Consensus 305 ~gr~l~v~~a~~~~~~~~------------------------------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G- 353 (681)
.++.|.|.++.+.....+ ......++|||+|||..+++++|+++|++||
T Consensus 98 ~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~ 177 (229)
T 2adc_A 98 HGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGG 177 (229)
T ss_dssp SSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSC
T ss_pred CCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCC
Confidence 589999998875421110 0112368899999999999999999999999
Q ss_pred cEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec-CCeeEEEEEe
Q 005712 354 DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS-DGNSKVKLRA 406 (681)
Q Consensus 354 ~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~-g~~i~v~~~~ 406 (681)
.|..|.|+.+ ++|||||+|.+.++|.+||..|||..|. |+.|+|.++.
T Consensus 178 ~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 178 VVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp CEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred CeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 9999999754 3789999999999999999999999999 9999998753
No 27
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.91 E-value=1e-23 Score=216.55 Aligned_cols=155 Identities=19% Similarity=0.334 Sum_probs=140.1
Q ss_pred CCCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCCcc
Q 005712 229 DNDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 308 (681)
Q Consensus 229 ~~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr~ 308 (681)
..++|||+|||+.+|+++|+++|+.+|. |..|.+.++ +|||||+|.+.++|.+|+..|++..+ .++.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G~--i~~v~i~~~-------kg~afV~f~~~~~A~~A~~~l~g~~i----~g~~ 87 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERYGE--PSEVFINRD-------RGFGFIRLESRTLAEIAKAELDGTIL----KSRP 87 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGGCC--CSEEEEETT-------TTEEEEECSSHHHHHHHHHHHTTCEE----TTEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCC--EEEEEEeCC-------CcEEEEEECCHHHHHHHHHHcCCcEE----CCce
Confidence 4578999999999999999999999998 999988654 79999999999999999999999988 6899
Q ss_pred ceecccCCCCCCChhhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 005712 309 VKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACIN 388 (681)
Q Consensus 309 l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~ 388 (681)
|.|.++.+ .++|||+|||..+|+++|+++|++||.|..|.|+.+ .++.++|||||+|.+.++|.+||.
T Consensus 88 l~v~~a~~-----------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~ 155 (261)
T 3sde_A 88 LRIRFATH-----------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALE 155 (261)
T ss_dssp CEEEECCC-----------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHH
T ss_pred eEeeeccc-----------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHH
Confidence 99999875 468999999999999999999999999999999999 589999999999999999999999
Q ss_pred HhCCc-eec---CCeeEEEEEecc
Q 005712 389 AINNK-EFS---DGNSKVKLRARL 408 (681)
Q Consensus 389 ~lng~-~~~---g~~i~v~~~~~~ 408 (681)
.||+. .+. ++.|.|.+....
T Consensus 156 ~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 156 RCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HHHHSCEESSSSCCBCEEEECCCE
T ss_pred HhcCCeEEecCCCceEEEeecccc
Confidence 99554 444 889888875443
No 28
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.90 E-value=5.4e-24 Score=222.00 Aligned_cols=161 Identities=18% Similarity=0.367 Sum_probs=141.1
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcC-CeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIG-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G-~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
..++|||+|||.++|+++|+++|++|| .|..|+|+.++. +.++|||||+|.+.++|.+|++.|++..|.|+.|.|..+
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 678999999999999999999999999 999999998855 889999999999999999999999999999999988654
Q ss_pred C-------------CCCcceeccccCc-ccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHH
Q 005712 228 E-------------DNDTLFVGNICNT-WTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYK 293 (681)
Q Consensus 228 ~-------------~~~~L~VgnLp~~-~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~ 293 (681)
. ..++|||+|||.. +|+++|+++|+.||. |..|+++.+...++.++|||||+|.+.++|.+|+
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~--v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~- 271 (292)
T 2ghp_A 195 NPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGS--IEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL- 271 (292)
T ss_dssp CCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSC--EEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-
T ss_pred CCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCC--eeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-
Confidence 3 2478999999999 999999999999998 9999999885335899999999999999999999
Q ss_pred HhCCCCeeeCCCCccceecccCCC
Q 005712 294 RLQKPDVVFGHPERTVKVAFAEPL 317 (681)
Q Consensus 294 ~l~g~~~~~g~~gr~l~v~~a~~~ 317 (681)
.|++..+ .++.|.|.|+.++
T Consensus 272 ~l~g~~~----~g~~i~V~~a~~k 291 (292)
T 2ghp_A 272 QMNRSLL----GNREISVSLADKK 291 (292)
T ss_dssp GGTTEEE----TTEEEEEEECCCC
T ss_pred HhcCCEE----CCcEEEEEEecCC
Confidence 9999887 6899999999875
No 29
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.90 E-value=7.2e-24 Score=208.04 Aligned_cols=152 Identities=22% Similarity=0.343 Sum_probs=137.6
Q ss_pred CCCEEEEcCCCc-cCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 149 KEHEIFIGGLDR-DATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 149 ~~~tVfV~NLp~-~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
.+++|||+|||. ++|+++|+++|++||.|..|+|++++ +|||||+|.+.++|++|++.|++..|.|+.|.|..+
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 468999999999 99999999999999999999998763 789999999999999999999999999999988543
Q ss_pred C-----------------------------------------CCCcceeccccCcccHHHHHHHHhhcC-ccceEEeeec
Q 005712 228 E-----------------------------------------DNDTLFVGNICNTWTKEAIKQKLKDYG-VEGVENINLV 265 (681)
Q Consensus 228 ~-----------------------------------------~~~~L~VgnLp~~~te~~L~~~F~~~G-~~~v~~i~i~ 265 (681)
. +.++|||+|||..+++++|+++|+.+| . |..++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~--v~~v~i~ 154 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGV--VKGFKFF 154 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSC--CCEEEES
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCC--ceEEEEE
Confidence 2 156799999999999999999999999 8 9999987
Q ss_pred cccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCC-CccceecccCCC
Q 005712 266 SDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP-ERTVKVAFAEPL 317 (681)
Q Consensus 266 ~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~-gr~l~v~~a~~~ 317 (681)
.+ .+|+|||+|.+.++|.+|+..|++..+ . ++.|+|.|+.+.
T Consensus 155 ~~------~~g~afV~f~~~~~A~~A~~~l~g~~~----~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 155 QK------DRKMALIQMGSVEEAVQALIDLHNHDL----GENHHLRVSFSKST 197 (198)
T ss_dssp ST------TSSCEEEECSSHHHHHHHHHHHTSSCC----SSCCSCCEEEECCC
T ss_pred eC------CCcEEEEEeCCHHHHHHHHHHhcCCcc----CCCCeEEEEeeccc
Confidence 64 278999999999999999999999988 4 799999998763
No 30
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.90 E-value=1.3e-23 Score=206.26 Aligned_cols=160 Identities=18% Similarity=0.299 Sum_probs=140.6
Q ss_pred CCcceeccccC-cccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCCcc
Q 005712 230 NDTLFVGNICN-TWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERT 308 (681)
Q Consensus 230 ~~~L~VgnLp~-~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr~ 308 (681)
+++|||+|||+ .+++++|+++|+++|. |..|+++.+. +|||||+|.+.++|.+|+..|++..+ .++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~--i~~v~i~~~~------~g~afV~f~~~~~a~~A~~~l~~~~~----~g~~ 70 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGD--VQRVKILFNK------KENALVQMADGNQAQLAMSHLNGHKL----HGKP 70 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCC--CSEEECSTTC------SSCCEEECTTTHHHHHHHHHHTTCCC----SSCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCC--EEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCee----cCeE
Confidence 57999999999 9999999999999998 9999998873 78999999999999999999999888 5899
Q ss_pred ceecccCCCCCCCh------------------------------hhcccceeeeecCCCCCCCHHHHHhhhcccC-cEEE
Q 005712 309 VKVAFAEPLREPDP------------------------------EIMAHVKTVFLDGVPPHWKENQIRDQIKGYG-DVIR 357 (681)
Q Consensus 309 l~v~~a~~~~~~~~------------------------------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G-~v~~ 357 (681)
|.|.++.......+ ......++|||+|||..+++++|+++|++|| .|..
T Consensus 71 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~ 150 (198)
T 1qm9_A 71 IRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKG 150 (198)
T ss_dssp CEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCE
T ss_pred EEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceE
Confidence 99998875421110 0112368899999999999999999999999 9999
Q ss_pred EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec-CCeeEEEEEe
Q 005712 358 IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS-DGNSKVKLRA 406 (681)
Q Consensus 358 v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~-g~~i~v~~~~ 406 (681)
|.|+.+ .+|+|||+|.+.++|.+|+..|||..|. |+.|+|.++.
T Consensus 151 v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 151 FKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp EEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred EEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 999765 3789999999999999999999999999 9999998863
No 31
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.81 E-value=1.2e-19 Score=171.36 Aligned_cols=143 Identities=14% Similarity=0.206 Sum_probs=109.4
Q ss_pred eeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeC---CCCccceecccCC-CCCCChhhcccceeeeecCCC
Q 005712 262 INLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFG---HPERTVKVAFAEP-LREPDPEIMAHVKTVFLDGVP 337 (681)
Q Consensus 262 i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g---~~gr~l~v~~a~~-~~~~~~~~~~~~~~l~V~nLp 337 (681)
++|+.+ ...++||+||+|.+.++|.+|++.+++.....+ ............. ............++|||+|||
T Consensus 3 ~kl~ln---~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 3 YKLILN---GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEE---CSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred EEEEec---CccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 455555 236899999999999999999988764321100 0111112111111 111122223456899999999
Q ss_pred CCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEec
Q 005712 338 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (681)
Q Consensus 338 ~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~ 407 (681)
+.+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||..|||..|.|+.|.|.++..
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 149 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 149 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 9999999999999999999999999988999999999999999999999999999999999999988744
No 32
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.75 E-value=1.2e-18 Score=155.48 Aligned_cols=96 Identities=23% Similarity=0.420 Sum_probs=71.8
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~ 228 (681)
...+|||+|||+++|+++|+++|++||.|.+|+|+++. +.++|||||+|.+.++|++||+.|++..|.|+.|.|..+.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35789999999999999999999999999999999985 4589999999999999999999999999999999886543
Q ss_pred C--------------CCcceeccccCcccHHH
Q 005712 229 D--------------NDTLFVGNICNTWTKEA 246 (681)
Q Consensus 229 ~--------------~~~L~VgnLp~~~te~~ 246 (681)
. .++|||+|||+.+|++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 82 SRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCCC----------------------------
T ss_pred CccccccccccccCCCCceEeCCCCCCccccc
Confidence 2 35799999999999864
No 33
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.73 E-value=2e-18 Score=189.16 Aligned_cols=81 Identities=20% Similarity=0.362 Sum_probs=77.0
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEe
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (681)
..++|||+|||+.+|+++|+++|++||.|+.|.|+.+..++.++|||||+|.+.++|.+||..|||..|.|+.|.|.++.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 45799999999999999999999999999999999998899999999999999999999999999999999999998875
Q ss_pred c
Q 005712 407 R 407 (681)
Q Consensus 407 ~ 407 (681)
.
T Consensus 181 ~ 181 (437)
T 3pgw_S 181 G 181 (437)
T ss_pred C
Confidence 3
No 34
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.73 E-value=5.6e-18 Score=146.88 Aligned_cols=82 Identities=22% Similarity=0.413 Sum_probs=77.8
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
-..++|||+|||+++|+++|+++|++||+|.+|+|++++.+|+++|||||+|.+.++|++||+.||+..|.|+.|.|..+
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CC
Q 005712 228 ED 229 (681)
Q Consensus 228 ~~ 229 (681)
.+
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 54
No 35
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.73 E-value=1.4e-17 Score=156.87 Aligned_cols=81 Identities=16% Similarity=0.272 Sum_probs=77.2
Q ss_pred ccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
...++|||+|||+.+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||..||+..|.|+.|+|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred e
Q 005712 406 A 406 (681)
Q Consensus 406 ~ 406 (681)
.
T Consensus 117 ~ 117 (156)
T 1h2v_Z 117 A 117 (156)
T ss_dssp S
T ss_pred C
Confidence 4
No 36
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.72 E-value=1.5e-17 Score=144.25 Aligned_cols=79 Identities=20% Similarity=0.389 Sum_probs=75.9
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
..++|||+|||.++|+++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+||+.|||..|.|+.|+|.++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999999999875
No 37
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.72 E-value=9.9e-18 Score=156.89 Aligned_cols=124 Identities=13% Similarity=0.178 Sum_probs=106.8
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHh-CCCCeeeCCCCccceecccCCCC-----------CCChhhcccceeeeecCCCCC
Q 005712 272 GLSRGFAFVMFSCHVDAMAAYKRL-QKPDVVFGHPERTVKVAFAEPLR-----------EPDPEIMAHVKTVFLDGVPPH 339 (681)
Q Consensus 272 g~skG~aFV~F~s~e~A~~Al~~l-~g~~~~~g~~gr~l~v~~a~~~~-----------~~~~~~~~~~~~l~V~nLp~~ 339 (681)
...+|+++|+|.+.++|.+|++.+ ++..+ .+ .+.+.++.... ..........++|||+|||+.
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~----~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~ 84 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGV----DG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNN 84 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTC----CC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSC
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCC----CC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCC
Confidence 356899999999999999999999 88777 46 88888776421 112223345789999999999
Q ss_pred CCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 340 WKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 340 ~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
+|+++|+++|++||.|..|.|+++ ++|||||+|.+.++|.+||..|||..|.|+.|+|.++
T Consensus 85 ~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 145 (150)
T 2i2y_A 85 GNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELS 145 (150)
T ss_dssp CSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEEC
T ss_pred CCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 999999999999999999999876 5899999999999999999999999999999999875
No 38
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.72 E-value=5.3e-18 Score=170.00 Aligned_cols=81 Identities=10% Similarity=0.297 Sum_probs=76.0
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccC--cEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYG--DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G--~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (681)
..++|||+||++.+|+++|+++|++|| .|+.|.|++++.+++++|||||+|.+.++|.+||+.||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 357899999999999999999999999 999999999999999999999999999999999999999999999999998
Q ss_pred Eec
Q 005712 405 RAR 407 (681)
Q Consensus 405 ~~~ 407 (681)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 654
No 39
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.69 E-value=5.9e-17 Score=152.89 Aligned_cols=133 Identities=23% Similarity=0.266 Sum_probs=109.0
Q ss_pred EEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCC-------eeeccccC------------CCCCCCCCcceecccc
Q 005712 179 EVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNP-------VICGKRCG------------TAPSEDNDTLFVGNIC 239 (681)
Q Consensus 179 ~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~-------~l~Gr~i~------------v~~~~~~~~L~VgnLp 239 (681)
.++|+.+.. +++|||||+|.+.++|++||+.+++. .+.+.... .......++|||+|||
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 567777643 69999999999999999999876532 11111111 1122346899999999
Q ss_pred CcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCCccceecccCCCCC
Q 005712 240 NTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLRE 319 (681)
Q Consensus 240 ~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr~l~v~~a~~~~~ 319 (681)
+.+|+++|+++|++||. |..|.|+.+. .++.++|||||+|.+.++|.+|+..|++..+ .++.|.|.++.+...
T Consensus 80 ~~~~~~~l~~~F~~~G~--v~~~~i~~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGR--VGDVYIPRDR-YTKESRGFAFVRFHDKRDAEDAMDAMDGAVL----DGRELRVQMARYGRP 152 (158)
T ss_dssp TTCCHHHHHHHHHHHSC--EEEEECCCCS-SCTTSCCEEEEEESBHHHHHHHHHHSTTEES----SSSEEEEEEECCSSC
T ss_pred CCCCHHHHHHHHHhcCC--eEEEEEeecC-CCCccceEEEEEECCHHHHHHHHHHhCCCEE----CCeEEEEEECCCCCC
Confidence 99999999999999998 9999999884 6899999999999999999999999999887 689999999987654
Q ss_pred C
Q 005712 320 P 320 (681)
Q Consensus 320 ~ 320 (681)
.
T Consensus 153 ~ 153 (158)
T 2kn4_A 153 P 153 (158)
T ss_dssp C
T ss_pred C
Confidence 3
No 40
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=141.56 Aligned_cols=78 Identities=15% Similarity=0.229 Sum_probs=75.7
Q ss_pred ceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 328 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
.++|||+|||+.+++++|+++|++||.|..|.|+++..|++++|||||+|++.++|++||+.|||..|.|+.|+|.++
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 579999999999999999999999999999999999999999999999999999999999999999999999999875
No 41
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.68 E-value=7.6e-17 Score=142.51 Aligned_cols=81 Identities=19% Similarity=0.234 Sum_probs=77.1
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
.+.++|||+|||+++|+++|+++|++||.|.+|+|++|+.|++++|||||+|.+.++|++||+.||+..|.|+.|.|..+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999988766
Q ss_pred C
Q 005712 228 E 228 (681)
Q Consensus 228 ~ 228 (681)
.
T Consensus 84 ~ 84 (110)
T 3s8s_A 84 I 84 (110)
T ss_dssp S
T ss_pred C
Confidence 4
No 42
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.68 E-value=1.8e-17 Score=141.40 Aligned_cols=81 Identities=27% Similarity=0.457 Sum_probs=74.9
Q ss_pred CCEEEEcCCCccCCHHHHHHHHhhcC-CeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcC-CCeeeccccCCCCC
Q 005712 150 EHEIFIGGLDRDATQEDVRKVFERIG-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMK-NPVICGKRCGTAPS 227 (681)
Q Consensus 150 ~~tVfV~NLp~~~teedL~~~F~~~G-~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~-g~~l~Gr~i~v~~~ 227 (681)
+++|||+|||+++|+++|+++|++|| +|.+|+|++++.|++++|||||+|.+.++|++||+.++ +..|.|++|.|..+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47999999999999999999999999 89999999999999999999999999999999999875 55799999999877
Q ss_pred CCC
Q 005712 228 EDN 230 (681)
Q Consensus 228 ~~~ 230 (681)
.+.
T Consensus 81 ~~~ 83 (91)
T 2lxi_A 81 DPK 83 (91)
T ss_dssp CSC
T ss_pred CCC
Confidence 654
No 43
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.67 E-value=3.8e-17 Score=150.06 Aligned_cols=121 Identities=14% Similarity=0.256 Sum_probs=79.8
Q ss_pred EEEEEeCCHHHHHHHHHHhCCCCeeeCCCCccceecccCCCCCCChhhcccceeeeecCCCCCCCHHHHHhhhcccCcEE
Q 005712 277 FAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVI 356 (681)
Q Consensus 277 ~aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~ 356 (681)
++|+++.+...+..|+..+++.... ++ ..+.+..+ +......++|||+|||+.+|+++|+++|++||.|.
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~----g~-~~~~~~~~-----~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~ 75 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQM----GR-GSMSYGRP-----PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVG 75 (135)
T ss_dssp ----------------------------------CCSCCS-----CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCS
T ss_pred cccccccCCCchhhhhhhccCCCCC----CC-CCCCcCCC-----CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE
Confidence 5677888888888888888876542 11 12223222 12233468999999999999999999999999999
Q ss_pred EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEec
Q 005712 357 RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (681)
Q Consensus 357 ~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~ 407 (681)
.|.|+.+..++.++|||||+|.+.++|++||..||+..|.|+.|+|.++..
T Consensus 76 ~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~ 126 (135)
T 2lea_A 76 DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 126 (135)
T ss_dssp EEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCC
T ss_pred EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 999999988999999999999999999999999999999999999987643
No 44
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.8e-16 Score=140.25 Aligned_cols=81 Identities=23% Similarity=0.454 Sum_probs=75.7
Q ss_pred ccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
...++|||+|||+.+|+++|+++|++||.|..|.|++++.+++++|||||+|.+.++|++||+.||+ .|.|+.|+|.++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 3468999999999999999999999999999999999999999999999999999999999999998 899999988876
Q ss_pred ec
Q 005712 406 AR 407 (681)
Q Consensus 406 ~~ 407 (681)
..
T Consensus 94 ~~ 95 (116)
T 2cqd_A 94 YL 95 (116)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 45
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.66 E-value=1.8e-16 Score=143.59 Aligned_cols=83 Identities=22% Similarity=0.327 Sum_probs=77.9
Q ss_pred ccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
...++|||+|||+.+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||+.||+..|.|+.|.|.++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 34689999999999999999999999999999999999889999999999999999999999999999999999999886
Q ss_pred ecc
Q 005712 406 ARL 408 (681)
Q Consensus 406 ~~~ 408 (681)
...
T Consensus 100 ~~~ 102 (126)
T 3ex7_B 100 FVR 102 (126)
T ss_dssp EES
T ss_pred cCC
Confidence 543
No 46
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.66 E-value=4.4e-17 Score=139.88 Aligned_cols=82 Identities=21% Similarity=0.353 Sum_probs=75.4
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCC--eEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCC----eeeccc
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGE--VIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNP----VICGKR 221 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~--V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~----~l~Gr~ 221 (681)
..-.||||+|||+++|+++|+++|++||. |.+|+|++|+.|++++|||||+|.+.++|++||+.||+. .|.|++
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 45689999999999999999999999995 679999999999999999999999999999999999986 588999
Q ss_pred cCCCCCCC
Q 005712 222 CGTAPSED 229 (681)
Q Consensus 222 i~v~~~~~ 229 (681)
|.|..+..
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 98877653
No 47
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.65 E-value=4.1e-17 Score=139.14 Aligned_cols=79 Identities=22% Similarity=0.364 Sum_probs=72.5
Q ss_pred ceeeeecCCCCCCCHHHHHhhhcccC-cEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC-CceecCCeeEEEEE
Q 005712 328 VKTVFLDGVPPHWKENQIRDQIKGYG-DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN-NKEFSDGNSKVKLR 405 (681)
Q Consensus 328 ~~~l~V~nLp~~~t~~~L~~~F~~~G-~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~ln-g~~~~g~~i~v~~~ 405 (681)
+++|||+|||..+|+++|+++|++|| .|..|+|++++.++.++|||||+|.+.++|.+||+.|+ +..|.|+.|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 89999999999999999999999999999999998874 56799999888765
Q ss_pred e
Q 005712 406 A 406 (681)
Q Consensus 406 ~ 406 (681)
.
T Consensus 81 ~ 81 (91)
T 2lxi_A 81 D 81 (91)
T ss_dssp C
T ss_pred C
Confidence 3
No 48
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=5.1e-16 Score=134.31 Aligned_cols=81 Identities=17% Similarity=0.255 Sum_probs=76.4
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEe
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (681)
..++|||+|||+.+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 86 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 86 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 45899999999999999999999999999999999998899999999999999999999999999999999998888753
Q ss_pred c
Q 005712 407 R 407 (681)
Q Consensus 407 ~ 407 (681)
.
T Consensus 87 ~ 87 (99)
T 1whw_A 87 I 87 (99)
T ss_dssp C
T ss_pred C
Confidence 3
No 49
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.65 E-value=7.2e-17 Score=138.52 Aligned_cols=79 Identities=18% Similarity=0.348 Sum_probs=73.6
Q ss_pred ceeeeecCCCCCCCHHHHHhhhcccCc--EEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc----eecCCeeE
Q 005712 328 VKTVFLDGVPPHWKENQIRDQIKGYGD--VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK----EFSDGNSK 401 (681)
Q Consensus 328 ~~~l~V~nLp~~~t~~~L~~~F~~~G~--v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~----~~~g~~i~ 401 (681)
-++|||+|||+.+|+++|+++|++||. |..|+|++|+.++++||||||+|.+.++|.+||+.||+. .|.|+.|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 479999999999999999999999995 678999999999999999999999999999999999997 59999999
Q ss_pred EEEEe
Q 005712 402 VKLRA 406 (681)
Q Consensus 402 v~~~~ 406 (681)
|+++.
T Consensus 89 V~~Ak 93 (95)
T 2lkz_A 89 VDFAK 93 (95)
T ss_dssp EEECC
T ss_pred EEEcc
Confidence 98864
No 50
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.65 E-value=3.6e-16 Score=148.75 Aligned_cols=126 Identities=21% Similarity=0.283 Sum_probs=78.2
Q ss_pred EEeCCHHHHHHHHHHhCCCCeeeCCCCccceecccCCC---------------CCCChhhcccceeeeecCCCCCCCHHH
Q 005712 280 VMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPL---------------REPDPEIMAHVKTVFLDGVPPHWKENQ 344 (681)
Q Consensus 280 V~F~s~e~A~~Al~~l~g~~~~~g~~gr~l~v~~a~~~---------------~~~~~~~~~~~~~l~V~nLp~~~t~~~ 344 (681)
.+|...++|..|+..|++.... ..++.+...+.... ....+......++|||+|||+.+|+++
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~--~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~ 88 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKH--RKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDE 88 (165)
T ss_dssp ---------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHH
T ss_pred hhhhccccccccchhhcccccc--ccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHH
Confidence 6788888888888887765442 12333333332110 111222334567899999999999999
Q ss_pred HHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEec
Q 005712 345 IRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (681)
Q Consensus 345 L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~ 407 (681)
|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||..|||..|.|+.|.|.++..
T Consensus 89 L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 151 (165)
T 1rk8_A 89 IQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV 151 (165)
T ss_dssp HHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred HHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 999999999999999999999999999999999999999999999999999999999988644
No 51
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=6e-16 Score=134.96 Aligned_cols=79 Identities=20% Similarity=0.388 Sum_probs=75.7
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
..++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|+|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 14 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 4689999999999999999999999999999999999889999999999999999999999999999999999888875
No 52
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=6.2e-16 Score=132.67 Aligned_cols=79 Identities=24% Similarity=0.420 Sum_probs=75.7
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
..++|||+|||..+|+++|+++|++||.|..|.|+++..+++++|||||+|.+.++|.+||..||+..|.|+.|+|.++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 3589999999999999999999999999999999999989999999999999999999999999999999999998875
No 53
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.65 E-value=6.6e-16 Score=128.92 Aligned_cols=78 Identities=14% Similarity=0.405 Sum_probs=74.9
Q ss_pred eeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEe
Q 005712 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 329 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (681)
.+|||+|||..+++++|+++|++||.|..|.|+++..++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.++.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 689999999999999999999999999999999998899999999999999999999999999999999999888764
No 54
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.65 E-value=6.9e-16 Score=130.00 Aligned_cols=80 Identities=19% Similarity=0.344 Sum_probs=75.9
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEe
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (681)
..++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|++.||+..|.|+.|+|.++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 45799999999999999999999999999999999998899999999999999999999999999999999999998864
No 55
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.64 E-value=1.8e-15 Score=134.64 Aligned_cols=81 Identities=20% Similarity=0.387 Sum_probs=76.7
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEe
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (681)
..++|||+|||+.+++++|+++|++||.|..|.|+++..++.++|||||+|.+.++|.+||+.||+..|.|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (115)
T 2dgo_A 14 NHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 93 (115)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999998888764
Q ss_pred c
Q 005712 407 R 407 (681)
Q Consensus 407 ~ 407 (681)
.
T Consensus 94 ~ 94 (115)
T 2dgo_A 94 R 94 (115)
T ss_dssp C
T ss_pred C
Confidence 3
No 56
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.64 E-value=1.9e-16 Score=141.01 Aligned_cols=104 Identities=17% Similarity=0.308 Sum_probs=93.8
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
...++|||+|||.++|+++|+++|++||.|..|+|+++ +.++|||||+|.+.++|.+|++.||+..|.|+.|.|..+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 46789999999999999999999999999999999875 566999999999999999999999999999999999887
Q ss_pred CCCCcceeccccCcccHHHHHHHHhhcCc
Q 005712 228 EDNDTLFVGNICNTWTKEAIKQKLKDYGV 256 (681)
Q Consensus 228 ~~~~~L~VgnLp~~~te~~L~~~F~~~G~ 256 (681)
...... .+++...++++|.++|+++|.
T Consensus 83 ~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 83 NANRAF--QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CHHHHT--TTSCHHHHHHHHHHHHHHHCC
T ss_pred cCChhh--hhhhHhHhHHHHHHHHHHhCC
Confidence 653322 678888999999999999994
No 57
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=9.5e-16 Score=132.65 Aligned_cols=79 Identities=20% Similarity=0.486 Sum_probs=74.9
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEe
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (681)
..++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+ ||+..|.|+.|.|.++.
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~ 87 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAE 87 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECC
Confidence 45899999999999999999999999999999999999899999999999999999999998 99999999999888753
No 58
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.64 E-value=1.3e-16 Score=135.69 Aligned_cols=79 Identities=22% Similarity=0.466 Sum_probs=72.4
Q ss_pred CEEEEcCCCccCCHHHHHHHHhhcC--CeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCC
Q 005712 151 HEIFIGGLDRDATQEDVRKVFERIG--EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (681)
Q Consensus 151 ~tVfV~NLp~~~teedL~~~F~~~G--~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~ 228 (681)
.+|||+|||+++|+++|+++|++|| .|.+|+|++++.+|+++|||||+|.+.++|++||+.||+..|.|+.|.|..+.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 99999999999999999999999999999999999999999999999998776
Q ss_pred C
Q 005712 229 D 229 (681)
Q Consensus 229 ~ 229 (681)
+
T Consensus 82 ~ 82 (90)
T 3p5t_L 82 K 82 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 59
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.64 E-value=2.9e-16 Score=135.11 Aligned_cols=86 Identities=22% Similarity=0.402 Sum_probs=80.4
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~ 228 (681)
++++|||+|||.++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|++.|++..|.|+.|.|..+.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred CCCcce
Q 005712 229 DNDTLF 234 (681)
Q Consensus 229 ~~~~L~ 234 (681)
......
T Consensus 81 ~~~~~~ 86 (96)
T 2x1f_A 81 NSDISG 86 (96)
T ss_dssp CSSGGG
T ss_pred CCCCCC
Confidence 765544
No 60
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.64 E-value=1e-15 Score=141.17 Aligned_cols=80 Identities=21% Similarity=0.421 Sum_probs=76.0
Q ss_pred ccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
...++|||+|||..+|+++|+++|++||.|..|.|+++..+++++|||||+|.+.++|.+||..||+..|.|+.|+|.++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34689999999999999999999999999999999999989999999999999999999999999999999999888875
No 61
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=4.3e-16 Score=135.86 Aligned_cols=80 Identities=18% Similarity=0.316 Sum_probs=76.3
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEe
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (681)
..++|||+|||+.+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVAR 91 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECS
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECC
Confidence 46899999999999999999999999999999999999899999999999999999999999999999999999988763
No 62
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.64 E-value=8.6e-16 Score=137.14 Aligned_cols=79 Identities=20% Similarity=0.376 Sum_probs=74.9
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEe
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (681)
..++|||+|||..+|+++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|++||+.|||..|.|+.|+|.++.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 35799999999999999999999999999999999997 89999999999999999999999999999999999988763
No 63
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.64 E-value=1.2e-16 Score=135.91 Aligned_cols=79 Identities=10% Similarity=0.318 Sum_probs=71.7
Q ss_pred eeeeecCCCCCCCHHHHHhhhcccC--cEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEe
Q 005712 329 KTVFLDGVPPHWKENQIRDQIKGYG--DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 329 ~~l~V~nLp~~~t~~~L~~~F~~~G--~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (681)
.+|||+|||+++|+++|+++|++|| .|..|.|+.++.+++++|||||+|.+.++|.+||+.|||..|.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999998887654
Q ss_pred c
Q 005712 407 R 407 (681)
Q Consensus 407 ~ 407 (681)
.
T Consensus 82 ~ 82 (90)
T 3p5t_L 82 K 82 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 64
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.64 E-value=7.1e-16 Score=137.36 Aligned_cols=80 Identities=19% Similarity=0.360 Sum_probs=76.0
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEe
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (681)
..++|||+|||+.+++++|+++|++||.|..|.|+++..++.++|||||+|.+.++|.+||+.||+..|.|+.|+|.++.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 103 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 103 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence 45899999999999999999999999999999999998899999999999999999999999999999999998888753
No 65
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6.4e-16 Score=134.49 Aligned_cols=82 Identities=18% Similarity=0.415 Sum_probs=77.5
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEe
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (681)
..++|||+|||+.+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||+.||+..|.|+.|+|.++.
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 90 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAG 90 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 45899999999999999999999999999999999998899999999999999999999999999999999999998875
Q ss_pred cc
Q 005712 407 RL 408 (681)
Q Consensus 407 ~~ 408 (681)
..
T Consensus 91 ~~ 92 (102)
T 1x5s_A 91 KS 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 66
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.63 E-value=5.3e-16 Score=129.47 Aligned_cols=80 Identities=20% Similarity=0.445 Sum_probs=76.1
Q ss_pred CCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCCC
Q 005712 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED 229 (681)
Q Consensus 150 ~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~~ 229 (681)
+.+|||+|||.++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|++|++.|++..|.|+.|.|..+.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999887764
No 67
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=6.5e-16 Score=132.55 Aligned_cols=83 Identities=27% Similarity=0.537 Sum_probs=78.2
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
...++|||+|||.++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|++||+.|++..|.|+.|.|..+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999998777
Q ss_pred CCC
Q 005712 228 EDN 230 (681)
Q Consensus 228 ~~~ 230 (681)
...
T Consensus 83 ~~~ 85 (95)
T 2dnz_A 83 TER 85 (95)
T ss_dssp SCC
T ss_pred ccc
Confidence 543
No 68
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.3e-15 Score=133.55 Aligned_cols=82 Identities=22% Similarity=0.340 Sum_probs=77.6
Q ss_pred ccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
...++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred ec
Q 005712 406 AR 407 (681)
Q Consensus 406 ~~ 407 (681)
..
T Consensus 101 ~~ 102 (106)
T 1p27_B 101 FV 102 (106)
T ss_dssp EE
T ss_pred cC
Confidence 54
No 69
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.63 E-value=7.1e-16 Score=129.35 Aligned_cols=79 Identities=20% Similarity=0.456 Sum_probs=75.7
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
..++|||+|||..+++++|+++|++||.|..|.|+++..++.++|||||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4589999999999999999999999999999999999889999999999999999999999999999999999999875
No 70
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.7e-15 Score=132.08 Aligned_cols=79 Identities=18% Similarity=0.384 Sum_probs=74.6
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEe
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (681)
..++|||+|||+.+|+++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 4689999999999999999999999999999999998 78999999999999999999999999999999999998764
Q ss_pred c
Q 005712 407 R 407 (681)
Q Consensus 407 ~ 407 (681)
.
T Consensus 92 ~ 92 (103)
T 2d9p_A 92 R 92 (103)
T ss_dssp S
T ss_pred c
Confidence 3
No 71
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=6.6e-16 Score=133.34 Aligned_cols=80 Identities=10% Similarity=0.281 Sum_probs=74.3
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCC---CCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMS---TAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~---~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~ 403 (681)
..++|||+|||+.+|+++|+++|++||.|..|.|+.+.. ++.++|||||+|.+.++|.+||..||+..|.|+.|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 357999999999999999999999999999999999876 66899999999999999999999999999999998887
Q ss_pred EEe
Q 005712 404 LRA 406 (681)
Q Consensus 404 ~~~ 406 (681)
++.
T Consensus 84 ~a~ 86 (98)
T 2cpf_A 84 ISE 86 (98)
T ss_dssp CSS
T ss_pred Ecc
Confidence 653
No 72
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.63 E-value=4.5e-16 Score=131.16 Aligned_cols=81 Identities=27% Similarity=0.508 Sum_probs=75.8
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~ 228 (681)
+.++|||+|||.++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.|++..|.|+.|.|..+.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 57899999999999999999999999999999999998899999999999999999999999999999999999887664
Q ss_pred C
Q 005712 229 D 229 (681)
Q Consensus 229 ~ 229 (681)
.
T Consensus 85 ~ 85 (87)
T 3bs9_A 85 R 85 (87)
T ss_dssp -
T ss_pred C
Confidence 3
No 73
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.63 E-value=4.3e-16 Score=130.65 Aligned_cols=81 Identities=20% Similarity=0.516 Sum_probs=76.6
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
..+.++|||+|||.++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.|++..|.|+.|.|..
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34779999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred C
Q 005712 227 S 227 (681)
Q Consensus 227 ~ 227 (681)
+
T Consensus 84 a 84 (85)
T 3mdf_A 84 A 84 (85)
T ss_dssp C
T ss_pred c
Confidence 4
No 74
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.5e-16 Score=134.87 Aligned_cols=80 Identities=20% Similarity=0.449 Sum_probs=76.1
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEe
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (681)
..++|||+|||+.+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||+.||+..|.|+.|+|.++.
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 90 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999998888753
No 75
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.63 E-value=3.6e-16 Score=135.76 Aligned_cols=79 Identities=14% Similarity=0.214 Sum_probs=75.7
Q ss_pred ceeeeecCCCC------CCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC-Cee
Q 005712 328 VKTVFLDGVPP------HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-GNS 400 (681)
Q Consensus 328 ~~~l~V~nLp~------~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g-~~i 400 (681)
.++|||+|||. .+++++|+++|++||.|..|.|+++..|++++|||||+|.+.++|.+||+.|||..|.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 57999999999 99999999999999999999999999999999999999999999999999999999999 999
Q ss_pred EEEEEe
Q 005712 401 KVKLRA 406 (681)
Q Consensus 401 ~v~~~~ 406 (681)
.|.++.
T Consensus 86 ~V~~a~ 91 (100)
T 3ns6_A 86 FLYTMK 91 (100)
T ss_dssp EEEESH
T ss_pred EEEECc
Confidence 998764
No 76
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.63 E-value=5.8e-16 Score=138.05 Aligned_cols=106 Identities=20% Similarity=0.341 Sum_probs=74.1
Q ss_pred CCcceeccccCcccHHHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCCccc
Q 005712 230 NDTLFVGNICNTWTKEAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTV 309 (681)
Q Consensus 230 ~~~L~VgnLp~~~te~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr~l 309 (681)
.++|||+|||+.+|+++|+++|++||. |..|+|+.+ .+.++|||||+|.+.++|.+|++.|++..+ .++.|
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~--v~~v~i~~d---~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~----~g~~i 75 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGN--ILSCKVVCD---ENGSKGYGFVHFETQEAAERAIEKMNGMLL----NDRKV 75 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSC--EEEEEEEEE---TTEEEEEEEEEESCHHHHHHHHHHHTTCEE----TTEEC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCC--EEEEEEeec---CCCCCceEEEEECCHHHHHHHHHHcCCCEE----CCEEE
Confidence 468999999999999999999999998 999999987 345899999999999999999999999988 68999
Q ss_pred eecccCCCCCCChh---hcccceeeeecCCCCCCCHHH
Q 005712 310 KVAFAEPLREPDPE---IMAHVKTVFLDGVPPHWKENQ 344 (681)
Q Consensus 310 ~v~~a~~~~~~~~~---~~~~~~~l~V~nLp~~~t~~~ 344 (681)
.|.++.++...... .....++|||+|||..+|++.
T Consensus 76 ~V~~a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 76 FVGRFKSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp EEEESSCCCC----------------------------
T ss_pred EEEECCCccccccccccccCCCCceEeCCCCCCccccc
Confidence 99999876543322 223356799999999998863
No 77
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=5e-16 Score=135.43 Aligned_cols=83 Identities=22% Similarity=0.401 Sum_probs=78.4
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
....++|||+|||.++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|++||+.|++..|.|+.|.|..
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 44679999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCC
Q 005712 227 SED 229 (681)
Q Consensus 227 ~~~ 229 (681)
+..
T Consensus 90 a~~ 92 (103)
T 2dnm_A 90 ARY 92 (103)
T ss_dssp CSS
T ss_pred CCc
Confidence 764
No 78
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=5.6e-16 Score=134.05 Aligned_cols=85 Identities=28% Similarity=0.446 Sum_probs=79.3
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
..+.++|||+|||.++|+++|+++|++||+|..|+|++++.+++++|||||+|.+.++|++||+.|++..|.|+.|.|..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34678999999999999999999999999999999999988999999999999999999999999999999999999887
Q ss_pred CCCCC
Q 005712 227 SEDND 231 (681)
Q Consensus 227 ~~~~~ 231 (681)
+....
T Consensus 85 a~~~~ 89 (99)
T 1whw_A 85 STIKK 89 (99)
T ss_dssp CCCCS
T ss_pred cCCCc
Confidence 76543
No 79
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.1e-15 Score=133.70 Aligned_cols=79 Identities=19% Similarity=0.333 Sum_probs=75.6
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
..++|||+|||+.+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||..||+..|.|+.|+|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 14 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp TTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 4689999999999999999999999999999999999889999999999999999999999999999999999988875
No 80
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=7.1e-16 Score=134.93 Aligned_cols=85 Identities=24% Similarity=0.467 Sum_probs=79.5
Q ss_pred ccCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCC
Q 005712 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (681)
Q Consensus 146 ~~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~ 225 (681)
.....++|||+|||.++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|++||+.|++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34467899999999999999999999999999999999998899999999999999999999999999999999999998
Q ss_pred CCCCC
Q 005712 226 PSEDN 230 (681)
Q Consensus 226 ~~~~~ 230 (681)
.+...
T Consensus 91 ~a~~~ 95 (105)
T 1x5u_A 91 KASAH 95 (105)
T ss_dssp ETTTT
T ss_pred ECCCC
Confidence 77654
No 81
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.5e-15 Score=134.27 Aligned_cols=81 Identities=25% Similarity=0.389 Sum_probs=76.2
Q ss_pred ccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC------CceecCCe
Q 005712 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN------NKEFSDGN 399 (681)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~ln------g~~~~g~~ 399 (681)
...++|||+|||+.+|+++|+++|++||.|..|.|+++..++.++|||||+|.+.++|.+||..|| +..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 346899999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred eEEEEEe
Q 005712 400 SKVKLRA 406 (681)
Q Consensus 400 i~v~~~~ 406 (681)
|+|.++.
T Consensus 93 l~v~~a~ 99 (111)
T 1x4h_A 93 LKVDLAV 99 (111)
T ss_dssp EEEECCC
T ss_pred EEEEECC
Confidence 8887653
No 82
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.3e-16 Score=135.86 Aligned_cols=84 Identities=21% Similarity=0.356 Sum_probs=78.8
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
..+.++|||+|||.++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|++||+.|++..|.|+.|.|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCC
Q 005712 227 SEDN 230 (681)
Q Consensus 227 ~~~~ 230 (681)
+...
T Consensus 92 a~~~ 95 (103)
T 2cq0_A 92 AKPS 95 (103)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7643
No 83
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.62 E-value=2e-16 Score=137.32 Aligned_cols=80 Identities=16% Similarity=0.305 Sum_probs=75.5
Q ss_pred CCCEEEEcCCCc------cCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeec-cc
Q 005712 149 KEHEIFIGGLDR------DATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICG-KR 221 (681)
Q Consensus 149 ~~~tVfV~NLp~------~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~G-r~ 221 (681)
.+++|||+|||+ ++++++|+++|++||.|.+|+|++++.|++++|||||+|.+.++|++||+.||+..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 457999999999 99999999999999999999999999999999999999999999999999999999999 98
Q ss_pred cCCCCCC
Q 005712 222 CGTAPSE 228 (681)
Q Consensus 222 i~v~~~~ 228 (681)
|.|..+.
T Consensus 85 l~V~~a~ 91 (100)
T 3ns6_A 85 LFLYTMK 91 (100)
T ss_dssp CEEEESH
T ss_pred EEEEECc
Confidence 8877653
No 84
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6e-16 Score=133.04 Aligned_cols=79 Identities=23% Similarity=0.463 Sum_probs=75.2
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEE-EEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRI-VLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v-~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
..++|||+|||..+|+++|+++|++||.|..| .|++++.++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 35899999999999999999999999999999 99999889999999999999999999999999999999999888875
No 85
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=2e-15 Score=132.50 Aligned_cols=82 Identities=17% Similarity=0.410 Sum_probs=76.7
Q ss_pred ccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeec-CCCCCcceEEEEEeCCHHHHHHHHHHh-CCceecCCeeEEE
Q 005712 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARN-MSTAKRKDYGFIDFSTHEAAVACINAI-NNKEFSDGNSKVK 403 (681)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d-~~~g~~rG~aFV~F~~~~~A~~Ai~~l-ng~~~~g~~i~v~ 403 (681)
...++|||+|||+.+|+++|+++|++||.|..|.|+.+ ..++.++|||||+|.+.++|.+||..| |+..|.|+.|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 34689999999999999999999999999999999999 789999999999999999999999999 9999999999888
Q ss_pred EEec
Q 005712 404 LRAR 407 (681)
Q Consensus 404 ~~~~ 407 (681)
++..
T Consensus 93 ~a~~ 96 (107)
T 2cph_A 93 WADS 96 (107)
T ss_dssp ECCC
T ss_pred eCCC
Confidence 7643
No 86
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=2.1e-15 Score=131.55 Aligned_cols=77 Identities=16% Similarity=0.303 Sum_probs=73.5
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
..++|||+|||+.+++++|+++|++|| |..|.|+++..+++++|||||+|.+.++|.+|| .||+..|.|+.|.|.++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 468999999999999999999999997 999999999999999999999999999999999 99999999999988875
No 87
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.5e-15 Score=130.13 Aligned_cols=80 Identities=14% Similarity=0.231 Sum_probs=75.9
Q ss_pred ccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
...++|||+|||..+++++|+++|++||.|..|.|+++..++.++|||||+|.+.++|.+||..||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999888764
No 88
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.62 E-value=5.1e-16 Score=155.56 Aligned_cols=79 Identities=22% Similarity=0.462 Sum_probs=73.5
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcC--CeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIG--EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G--~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
..++|||+|||+++|+++|+++|++|| .|+.|+|++++.+++++|||||+|.+.++|++||+.||+..|.|+.|.|..
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 577999999999999999999999999 999999999999999999999999999999999999999999999886655
Q ss_pred C
Q 005712 227 S 227 (681)
Q Consensus 227 ~ 227 (681)
+
T Consensus 147 a 147 (229)
T 3q2s_C 147 V 147 (229)
T ss_dssp C
T ss_pred C
Confidence 4
No 89
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.1e-15 Score=132.37 Aligned_cols=83 Identities=25% Similarity=0.526 Sum_probs=77.5
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
....++|||+|||.++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|++||+ |++..|.|+.|.|..
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 3467899999999999999999999999999999999999999999999999999999999998 999999999999877
Q ss_pred CCCC
Q 005712 227 SEDN 230 (681)
Q Consensus 227 ~~~~ 230 (681)
+...
T Consensus 86 a~~~ 89 (99)
T 2dgs_A 86 AEPR 89 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 90
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.61 E-value=1e-15 Score=136.27 Aligned_cols=85 Identities=28% Similarity=0.537 Sum_probs=79.2
Q ss_pred ccCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCC
Q 005712 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (681)
Q Consensus 146 ~~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~ 225 (681)
...+.++|||+|||.++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|++||+.|++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34477899999999999999999999999999999999998899999999999999999999999999999999999988
Q ss_pred CCCCC
Q 005712 226 PSEDN 230 (681)
Q Consensus 226 ~~~~~ 230 (681)
.+...
T Consensus 91 ~a~~~ 95 (115)
T 2dgo_A 91 WATRK 95 (115)
T ss_dssp ESSCC
T ss_pred EccCC
Confidence 77643
No 91
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.3e-15 Score=131.74 Aligned_cols=83 Identities=20% Similarity=0.374 Sum_probs=77.7
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeE-EEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccc----
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVI-EVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKR---- 221 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~-~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~---- 221 (681)
....++|||+|||.++|+++|+++|++||.|. .|+|++++.+++++|||||+|.+.++|++|++.||+..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34678999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 005712 222 CGTAPSED 229 (681)
Q Consensus 222 i~v~~~~~ 229 (681)
|.|..+..
T Consensus 86 l~v~~a~~ 93 (99)
T 2div_A 86 FKLNYATY 93 (99)
T ss_dssp CCEEETTC
T ss_pred EEEeecCC
Confidence 88776654
No 92
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.61 E-value=1.6e-15 Score=131.33 Aligned_cols=80 Identities=26% Similarity=0.333 Sum_probs=76.1
Q ss_pred ccceeeeecCCCCCCCHHHHHhhhcccCcEEE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC
Q 005712 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIR--------IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397 (681)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~--------v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g 397 (681)
...++|||+|||..+|+++|+++|++||.|.. |.|+.++.+++++|||||+|.+.++|.+||+.|||..|.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 34689999999999999999999999999999 9999999899999999999999999999999999999999
Q ss_pred CeeEEEEE
Q 005712 398 GNSKVKLR 405 (681)
Q Consensus 398 ~~i~v~~~ 405 (681)
+.|+|.++
T Consensus 91 ~~l~V~~A 98 (99)
T 2la6_A 91 NPIKVSFA 98 (99)
T ss_dssp SBCEEEEC
T ss_pred cEEEEEec
Confidence 99999874
No 93
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.3e-15 Score=130.37 Aligned_cols=79 Identities=27% Similarity=0.460 Sum_probs=75.7
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
..++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||+.||+..|.|+.|+|.++
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 4579999999999999999999999999999999999989999999999999999999999999999999999998875
No 94
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.7e-15 Score=132.32 Aligned_cols=83 Identities=27% Similarity=0.360 Sum_probs=77.9
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhh-cCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCe-eeccccCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFER-IGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPV-ICGKRCGT 224 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~-~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~-l~Gr~i~v 224 (681)
....++|||+|||.++|+++|+++|++ ||.|..|+|++++ +++++|||||+|.+.++|.+||+.|++.. |.|+.|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 456789999999999999999999999 9999999999997 99999999999999999999999999999 99999999
Q ss_pred CCCCCC
Q 005712 225 APSEDN 230 (681)
Q Consensus 225 ~~~~~~ 230 (681)
..+...
T Consensus 85 ~~a~~~ 90 (104)
T 2dhg_A 85 SVAIPK 90 (104)
T ss_dssp CBCCCC
T ss_pred EEccCC
Confidence 887643
No 95
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=3e-15 Score=129.75 Aligned_cols=78 Identities=17% Similarity=0.359 Sum_probs=74.4
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
..++|||+|||..+|+++|+++|++||.|..|.|+.+. +++++|||||+|.+.++|.+||+.||+..|.|+.|+|.++
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 45799999999999999999999999999999999997 8999999999999999999999999999999999888875
No 96
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=8.7e-16 Score=132.59 Aligned_cols=83 Identities=23% Similarity=0.445 Sum_probs=77.3
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCC---CCCccceEEEEecchhHHHHHHHhcCCCeeeccccCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFS---TNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~---tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v 224 (681)
.+.++|||+|||.++|+++|+++|++||.|..|+|++++. |++++|||||+|.+.++|++||+.|++..|.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999999999876 6699999999999999999999999999999999999
Q ss_pred CCCCCC
Q 005712 225 APSEDN 230 (681)
Q Consensus 225 ~~~~~~ 230 (681)
..+...
T Consensus 83 ~~a~~~ 88 (98)
T 2cpf_A 83 RISERA 88 (98)
T ss_dssp ECSSCS
T ss_pred EEccCC
Confidence 877653
No 97
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=7.2e-16 Score=132.21 Aligned_cols=82 Identities=26% Similarity=0.398 Sum_probs=77.4
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
....++|||+|||.++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|++||+.|++..|.|+.|.|..
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred CC
Q 005712 227 SE 228 (681)
Q Consensus 227 ~~ 228 (681)
+.
T Consensus 92 a~ 93 (95)
T 2cqc_A 92 PS 93 (95)
T ss_dssp CS
T ss_pred cC
Confidence 65
No 98
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=6.6e-16 Score=132.76 Aligned_cols=82 Identities=23% Similarity=0.485 Sum_probs=77.7
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEE-EEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEV-RLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v-~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
...++|||+|||.++|+++|+++|++||.|..| +|++++.++.++|||||+|.+.++|++||+.|++..|.|+.|.|..
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467899999999999999999999999999999 9999989999999999999999999999999999999999999877
Q ss_pred CCC
Q 005712 227 SED 229 (681)
Q Consensus 227 ~~~ 229 (681)
+..
T Consensus 83 a~~ 85 (96)
T 1x5t_A 83 AFK 85 (96)
T ss_dssp SCC
T ss_pred ecc
Confidence 654
No 99
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=6.2e-16 Score=129.81 Aligned_cols=81 Identities=23% Similarity=0.434 Sum_probs=76.7
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
.+.++|||+|||.++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|++|++.||+..|.|+.|++..+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred C
Q 005712 228 E 228 (681)
Q Consensus 228 ~ 228 (681)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 100
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.61 E-value=7.3e-16 Score=146.58 Aligned_cols=84 Identities=19% Similarity=0.352 Sum_probs=77.5
Q ss_pred hccCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCC
Q 005712 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (681)
Q Consensus 145 ~~~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v 224 (681)
......++|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|++..|.|+.|.|
T Consensus 67 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 146 (165)
T 1rk8_A 67 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 146 (165)
T ss_dssp CCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCC
Q 005712 225 APSE 228 (681)
Q Consensus 225 ~~~~ 228 (681)
.++.
T Consensus 147 ~~a~ 150 (165)
T 1rk8_A 147 DWCF 150 (165)
T ss_dssp EESE
T ss_pred EEec
Confidence 7664
No 101
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.61 E-value=1.7e-15 Score=130.37 Aligned_cols=80 Identities=24% Similarity=0.405 Sum_probs=75.9
Q ss_pred ceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEec
Q 005712 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRAR 407 (681)
Q Consensus 328 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~ 407 (681)
.++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.++..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 47999999999999999999999999999999999988999999999999999999999999999999999998887643
No 102
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.61 E-value=8.4e-16 Score=136.90 Aligned_cols=83 Identities=23% Similarity=0.336 Sum_probs=78.3
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
...++|||+|||.++|+++|+++|++||.|+.|+|++++.+++++|||||+|.+.++|++||+.|++..|.|+.|.|..+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 35689999999999999999999999999999999999889999999999999999999999999999999999999877
Q ss_pred CCC
Q 005712 228 EDN 230 (681)
Q Consensus 228 ~~~ 230 (681)
...
T Consensus 103 ~~~ 105 (115)
T 2cpz_A 103 RSK 105 (115)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
No 103
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.61 E-value=3.2e-15 Score=130.78 Aligned_cols=80 Identities=19% Similarity=0.301 Sum_probs=74.6
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC---CeeEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD---GNSKVK 403 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g---~~i~v~ 403 (681)
..++|||+|||..+++++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+||+.||+..|.+ +.|.|.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 46899999999999999999999999999999999997 79999999999999999999999999999998 998888
Q ss_pred EEec
Q 005712 404 LRAR 407 (681)
Q Consensus 404 ~~~~ 407 (681)
++..
T Consensus 93 ~a~~ 96 (105)
T 2dnh_A 93 FADT 96 (105)
T ss_dssp ESCS
T ss_pred ECcc
Confidence 7533
No 104
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.61 E-value=1.4e-15 Score=128.63 Aligned_cols=80 Identities=24% Similarity=0.503 Sum_probs=75.8
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~ 228 (681)
..++|||+|||.++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|++|+ .|++..|.|+.|.|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3579999999999999999999999999999999999889999999999999999999999 899999999999988776
Q ss_pred C
Q 005712 229 D 229 (681)
Q Consensus 229 ~ 229 (681)
.
T Consensus 84 ~ 84 (89)
T 3ucg_A 84 T 84 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 105
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=6.8e-16 Score=134.29 Aligned_cols=83 Identities=29% Similarity=0.571 Sum_probs=77.8
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
..+.++|||+|||.++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||+.|++..|.|+.|.|..
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CCC
Q 005712 227 SED 229 (681)
Q Consensus 227 ~~~ 229 (681)
+..
T Consensus 89 a~~ 91 (102)
T 1x5s_A 89 AGK 91 (102)
T ss_dssp EEC
T ss_pred CCC
Confidence 654
No 106
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.61 E-value=1.1e-15 Score=134.58 Aligned_cols=83 Identities=25% Similarity=0.510 Sum_probs=78.5
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
....++|||+|||..+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.|++..|.|+.|.|..
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCC
Q 005712 227 SED 229 (681)
Q Consensus 227 ~~~ 229 (681)
+..
T Consensus 103 a~~ 105 (108)
T 2jrs_A 103 VTE 105 (108)
T ss_dssp SCS
T ss_pred ccc
Confidence 764
No 107
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.61 E-value=2.2e-15 Score=132.72 Aligned_cols=82 Identities=24% Similarity=0.370 Sum_probs=77.0
Q ss_pred cccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEE
Q 005712 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (681)
Q Consensus 325 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (681)
....++|||+|||..+|+++|+++|++||.|..|.|+++..++.++|||||+|.+.++|.+||+.|||..|.|+.|+|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999998886
Q ss_pred Ee
Q 005712 405 RA 406 (681)
Q Consensus 405 ~~ 406 (681)
+.
T Consensus 103 a~ 104 (108)
T 2jrs_A 103 VT 104 (108)
T ss_dssp SC
T ss_pred cc
Confidence 53
No 108
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=5.4e-15 Score=131.32 Aligned_cols=79 Identities=20% Similarity=0.257 Sum_probs=74.4
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEe
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (681)
..++|||+|||+.+++++|+++|++||.|..|.|+.+. +++++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 35899999999999999999999999999999999996 58999999999999999999999999999999999988753
No 109
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=9.6e-16 Score=133.67 Aligned_cols=79 Identities=23% Similarity=0.341 Sum_probs=72.7
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
....++|||+|||+++|+++|+++|++||+|.+|+|++++. ++++|||||+|.+.++|.+||+ +++..|.|+.|.|..
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999976 9999999999999999999998 899999999887754
Q ss_pred C
Q 005712 227 S 227 (681)
Q Consensus 227 ~ 227 (681)
+
T Consensus 86 ~ 86 (103)
T 1s79_A 86 K 86 (103)
T ss_dssp H
T ss_pred c
Confidence 3
No 110
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=8.8e-16 Score=131.44 Aligned_cols=81 Identities=22% Similarity=0.463 Sum_probs=76.3
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
....++|||+|||.++|+++|+++|++||+|..|+|+.++.+++++|||||+|.+.++|.+|++.|++..|.|+.|.|..
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred C
Q 005712 227 S 227 (681)
Q Consensus 227 ~ 227 (681)
+
T Consensus 93 a 93 (94)
T 2e5h_A 93 A 93 (94)
T ss_dssp C
T ss_pred c
Confidence 4
No 111
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.60 E-value=2.9e-15 Score=132.19 Aligned_cols=82 Identities=22% Similarity=0.365 Sum_probs=77.3
Q ss_pred ccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
...++|||+|||..+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||..|||..|.|+.|.|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 44689999999999999999999999999999999999889999999999999999999999999999999999999876
Q ss_pred ec
Q 005712 406 AR 407 (681)
Q Consensus 406 ~~ 407 (681)
..
T Consensus 104 ~~ 105 (110)
T 1oo0_B 104 FV 105 (110)
T ss_dssp EE
T ss_pred cc
Confidence 44
No 112
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.60 E-value=1.3e-15 Score=128.41 Aligned_cols=80 Identities=23% Similarity=0.543 Sum_probs=73.7
Q ss_pred ccCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCC
Q 005712 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (681)
Q Consensus 146 ~~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~ 225 (681)
.....++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||+ +++..|.|+.|.|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 34578899999999999999999999999999999999999999999999999999999999996 47888999988775
Q ss_pred C
Q 005712 226 P 226 (681)
Q Consensus 226 ~ 226 (681)
.
T Consensus 86 ~ 86 (87)
T 3s7r_A 86 K 86 (87)
T ss_dssp E
T ss_pred e
Confidence 4
No 113
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1e-15 Score=134.10 Aligned_cols=82 Identities=22% Similarity=0.386 Sum_probs=77.3
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
..+.++|||+|||.++|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|++||+.|++..|.|+.|.|..
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CC
Q 005712 227 SE 228 (681)
Q Consensus 227 ~~ 228 (681)
+.
T Consensus 100 a~ 101 (106)
T 1p27_B 100 CF 101 (106)
T ss_dssp SE
T ss_pred ec
Confidence 64
No 114
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.2e-15 Score=132.31 Aligned_cols=82 Identities=28% Similarity=0.446 Sum_probs=77.0
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
..+.++|||+|||.++|+++|+++|++||.|..|+|+.++ +++++|||||+|.+.++|.+||+.|++..|.|+.|.|..
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3467899999999999999999999999999999999997 899999999999999999999999999999999998877
Q ss_pred CCC
Q 005712 227 SED 229 (681)
Q Consensus 227 ~~~ 229 (681)
+.+
T Consensus 93 a~~ 95 (100)
T 2do4_A 93 SNS 95 (100)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 115
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=5.5e-15 Score=128.78 Aligned_cols=80 Identities=14% Similarity=0.334 Sum_probs=73.5
Q ss_pred ccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
...++|||+|||+.+|+++|+++|++||.|..|.|+.+.. .++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 3468999999999999999999999999999999998853 38999999999999999999999999999999988876
Q ss_pred ec
Q 005712 406 AR 407 (681)
Q Consensus 406 ~~ 407 (681)
..
T Consensus 91 ~~ 92 (103)
T 2cq3_A 91 TA 92 (103)
T ss_dssp CS
T ss_pred cc
Confidence 44
No 116
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.6e-15 Score=132.36 Aligned_cols=78 Identities=12% Similarity=0.235 Sum_probs=73.8
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcc-cCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce-ecCCeeEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKG-YGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE-FSDGNSKVKL 404 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~-~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~-~~g~~i~v~~ 404 (681)
..++|||+|||+.+|+++|+++|++ ||.|..|.|+.+. ++.++|||||+|.+.++|.+||+.||+.. |.|+.|.|.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 3589999999999999999999999 9999999999998 99999999999999999999999999999 9999987776
Q ss_pred E
Q 005712 405 R 405 (681)
Q Consensus 405 ~ 405 (681)
+
T Consensus 87 a 87 (104)
T 2dhg_A 87 A 87 (104)
T ss_dssp C
T ss_pred c
Confidence 4
No 117
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.3e-15 Score=134.61 Aligned_cols=84 Identities=23% Similarity=0.397 Sum_probs=78.7
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcC------CCeeecc
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMK------NPVICGK 220 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~------g~~l~Gr 220 (681)
....++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||+.|+ +..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3467899999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred ccCCCCCCCC
Q 005712 221 RCGTAPSEDN 230 (681)
Q Consensus 221 ~i~v~~~~~~ 230 (681)
.|.|..+...
T Consensus 92 ~l~v~~a~~~ 101 (111)
T 1x4h_A 92 QLKVDLAVTR 101 (111)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEECCCC
Confidence 9998877643
No 118
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.60 E-value=1e-15 Score=134.15 Aligned_cols=85 Identities=24% Similarity=0.475 Sum_probs=78.4
Q ss_pred ccCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCee---ecccc
Q 005712 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI---CGKRC 222 (681)
Q Consensus 146 ~~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l---~Gr~i 222 (681)
.....++|||+|||.++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||+.|++..+ .++.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 344678999999999999999999999999999999999999999999999999999999999999999887 88999
Q ss_pred CCCCCCCC
Q 005712 223 GTAPSEDN 230 (681)
Q Consensus 223 ~v~~~~~~ 230 (681)
.|..+...
T Consensus 89 ~v~~a~~~ 96 (106)
T 2dgp_A 89 QVKPADSE 96 (106)
T ss_dssp EEEECCCC
T ss_pred EEEECCcc
Confidence 88777643
No 119
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.60 E-value=2e-15 Score=132.31 Aligned_cols=79 Identities=15% Similarity=0.372 Sum_probs=75.1
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee---cCCeeEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF---SDGNSKVK 403 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~---~g~~i~v~ 403 (681)
..++|||+|||..+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..+ .++.|.|.
T Consensus 12 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 91 (106)
T 2dgp_A 12 DAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVK 91 (106)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEE
Confidence 468999999999999999999999999999999999999999999999999999999999999999998 88998888
Q ss_pred EE
Q 005712 404 LR 405 (681)
Q Consensus 404 ~~ 405 (681)
++
T Consensus 92 ~a 93 (106)
T 2dgp_A 92 PA 93 (106)
T ss_dssp EC
T ss_pred EC
Confidence 75
No 120
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.60 E-value=1.7e-15 Score=129.85 Aligned_cols=82 Identities=18% Similarity=0.384 Sum_probs=76.1
Q ss_pred ccCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCC
Q 005712 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (681)
Q Consensus 146 ~~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~ 225 (681)
.....++|||+|||+.+|+++|+++|++||+|..|+|+.++. ++++|||||+|.+.++|++||+.|++..|.|+.|.|.
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 344678999999999999999999999999999999999965 9999999999999999999999999999999999887
Q ss_pred CCC
Q 005712 226 PSE 228 (681)
Q Consensus 226 ~~~ 228 (681)
.+.
T Consensus 91 ~a~ 93 (95)
T 2ywk_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred EcC
Confidence 764
No 121
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.4e-15 Score=130.37 Aligned_cols=77 Identities=19% Similarity=0.451 Sum_probs=73.3
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCC-CCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMST-AKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~-g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
..++|||+|||+.+|+++|+++|++|| |..|.|+.+..+ ++++|||||+|.+.++|.+|| .||+..|.|+.|.|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEc
Confidence 458999999999999999999999999 999999999887 999999999999999999999 99999999999888875
No 122
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.60 E-value=2.7e-16 Score=144.50 Aligned_cols=77 Identities=19% Similarity=0.282 Sum_probs=70.3
Q ss_pred ccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
...++|||+|||+++|+++|+++|++|| |+.|.|++++. ++++|||||+|++.++|++|| .||+..|.++.|.|.+.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 3467999999999999999999999999 66999999975 999999999999999999999 89999999999877653
No 123
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.5e-15 Score=133.26 Aligned_cols=85 Identities=26% Similarity=0.486 Sum_probs=79.1
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeec-CCCCCccceEEEEecchhHHHHHHHhc-CCCeeeccccCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKN-FSTNRNKGYAFVKFANKEHAKRALTEM-KNPVICGKRCGT 224 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d-~~tg~skG~aFVeF~~~e~A~~Al~~l-~g~~l~Gr~i~v 224 (681)
....++|||+|||.++|+++|+++|++||.|..|+|+++ +.+++++|||||+|.+.++|++||+.| ++..|.|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 346789999999999999999999999999999999998 789999999999999999999999999 999999999999
Q ss_pred CCCCCCC
Q 005712 225 APSEDND 231 (681)
Q Consensus 225 ~~~~~~~ 231 (681)
..+....
T Consensus 92 ~~a~~~~ 98 (107)
T 2cph_A 92 EWADSEV 98 (107)
T ss_dssp EECCCCC
T ss_pred EeCCCCC
Confidence 8776543
No 124
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.60 E-value=1.6e-15 Score=125.89 Aligned_cols=73 Identities=16% Similarity=0.266 Sum_probs=68.3
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
.+..|+|+||++.+|+++|+++|.+||+|.+++|+. ++|||||+|.+.++|.+|++.||+..|.|+.|.|..+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 467999999999999999999999999999999964 6999999999999999999999999999999987655
No 125
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.60 E-value=1.5e-15 Score=131.34 Aligned_cols=82 Identities=26% Similarity=0.357 Sum_probs=76.9
Q ss_pred ccCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEE--------EEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCee
Q 005712 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIE--------VRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI 217 (681)
Q Consensus 146 ~~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~--------v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l 217 (681)
.....++|||+|||.++|+++|+++|++||.|.. |+|++++.+++++|||||+|.+.++|++|++.|++..|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3457799999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred eccccCCCCC
Q 005712 218 CGKRCGTAPS 227 (681)
Q Consensus 218 ~Gr~i~v~~~ 227 (681)
.|+.|.|..+
T Consensus 89 ~g~~l~V~~A 98 (99)
T 2la6_A 89 SGNPIKVSFA 98 (99)
T ss_dssp SSSBCEEEEC
T ss_pred CCcEEEEEec
Confidence 9999987654
No 126
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.9e-15 Score=131.77 Aligned_cols=80 Identities=16% Similarity=0.367 Sum_probs=74.8
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEe
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (681)
..++|||+|||+.+|+++|+++|++||.|..|.|+++.. +.++|||||+|.+.++|.+||. +|+..|.|+.|.|.++.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 357999999999999999999999999999999999976 9999999999999999999998 99999999999999865
Q ss_pred cc
Q 005712 407 RL 408 (681)
Q Consensus 407 ~~ 408 (681)
..
T Consensus 88 ~~ 89 (103)
T 1s79_A 88 DY 89 (103)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 127
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.60 E-value=3.6e-15 Score=130.85 Aligned_cols=79 Identities=8% Similarity=0.175 Sum_probs=75.5
Q ss_pred ccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
...++|||+|||+.+|+++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|++||+.||+..|.|+.|+|.++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 346899999999999999999999999999999999997 8999999999999999999999999999999999999876
No 128
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.6e-15 Score=129.21 Aligned_cols=78 Identities=10% Similarity=0.190 Sum_probs=72.3
Q ss_pred cceeeeecCCCCCCCHHHHH----hhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEE
Q 005712 327 HVKTVFLDGVPPHWKENQIR----DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 402 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~----~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v 402 (681)
..++|||+|||+.+++++|+ ++|++||.|..|.|+.+..+ +|||||+|.+.++|.+||+.|||..|.|+.|+|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 45799999999999999999 99999999999999998755 899999999999999999999999999999988
Q ss_pred EEEec
Q 005712 403 KLRAR 407 (681)
Q Consensus 403 ~~~~~ 407 (681)
.++..
T Consensus 85 ~~a~~ 89 (96)
T 2dgx_A 85 SLATG 89 (96)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 87643
No 129
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=6.6e-16 Score=134.37 Aligned_cols=83 Identities=19% Similarity=0.505 Sum_probs=78.2
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
....++|||+|||.++|+++|+++|++||.|+.|+|++++.+++++|||||+|.+.++|++||+.|++..|.|+.|.|..
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCC
Q 005712 227 SED 229 (681)
Q Consensus 227 ~~~ 229 (681)
+..
T Consensus 89 a~~ 91 (102)
T 2cqb_A 89 AKP 91 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 130
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.59 E-value=1.5e-15 Score=138.15 Aligned_cols=85 Identities=26% Similarity=0.372 Sum_probs=79.6
Q ss_pred ccCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCC
Q 005712 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (681)
Q Consensus 146 ~~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~ 225 (681)
...+.++|||+|||.++|+++|+++|++||+|..|+|++++.+++++|||||+|.+.++|++||+.|++..|.|+.|.|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 005712 226 PSEDN 230 (681)
Q Consensus 226 ~~~~~ 230 (681)
.+...
T Consensus 122 ~a~~~ 126 (129)
T 2kxn_B 122 FSITK 126 (129)
T ss_dssp CCSSS
T ss_pred EecCC
Confidence 87653
No 131
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2.3e-15 Score=131.74 Aligned_cols=83 Identities=29% Similarity=0.569 Sum_probs=78.0
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
....++|||+|||+++|+++|+++|++||+|..|+|++++.+++++|||||+|.+.++|++||+. ++..|.|+.|.|..
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 44678999999999999999999999999999999999999999999999999999999999998 99999999999988
Q ss_pred CCCC
Q 005712 227 SEDN 230 (681)
Q Consensus 227 ~~~~ 230 (681)
+...
T Consensus 92 a~~~ 95 (105)
T 2dh8_A 92 CTPR 95 (105)
T ss_dssp SCCS
T ss_pred ccCC
Confidence 7653
No 132
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.9e-15 Score=134.09 Aligned_cols=79 Identities=20% Similarity=0.288 Sum_probs=74.8
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEE--------EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCC
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVI--------RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 398 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~--------~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~ 398 (681)
..++|||+|||+.+|+++|+++|++||.|. .|.|+.+..+++++|||||+|.+.++|.+||..||+..|.|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 93 (113)
T 2cpe_A 14 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGS 93 (113)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCC
Confidence 468999999999999999999999999999 699999988999999999999999999999999999999999
Q ss_pred eeEEEEE
Q 005712 399 NSKVKLR 405 (681)
Q Consensus 399 ~i~v~~~ 405 (681)
.|+|.++
T Consensus 94 ~l~V~~a 100 (113)
T 2cpe_A 94 KLKVSLA 100 (113)
T ss_dssp ECEEECS
T ss_pred EEEEEEC
Confidence 9888764
No 133
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.1e-15 Score=134.49 Aligned_cols=83 Identities=29% Similarity=0.485 Sum_probs=77.1
Q ss_pred ccCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCC
Q 005712 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (681)
Q Consensus 146 ~~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~ 225 (681)
.....++|||+|||.++|+++|+++|++||.|+.|+|++++.+++++|||||+|.+.++|++||+.+++ .|.|+.|.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 344678999999999999999999999999999999999999999999999999999999999999998 8999999987
Q ss_pred CCCC
Q 005712 226 PSED 229 (681)
Q Consensus 226 ~~~~ 229 (681)
.+..
T Consensus 92 ~a~~ 95 (116)
T 2cqd_A 92 LAYL 95 (116)
T ss_dssp ESTT
T ss_pred Eccc
Confidence 7643
No 134
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.8e-15 Score=130.54 Aligned_cols=76 Identities=21% Similarity=0.289 Sum_probs=70.3
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
..++|||+|||+.+|+++|+++|++||.| .|.|++++ +++++|||||+|.+.++|++|| .+|+..|.++.|.|.+.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLN 89 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEEC
Confidence 35799999999999999999999999955 99999997 8999999999999999999999 58999999999888764
No 135
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.59 E-value=1.5e-15 Score=142.02 Aligned_cols=118 Identities=19% Similarity=0.291 Sum_probs=104.4
Q ss_pred CCCccceEEEEecchhHHHHHHHhc-CCCeeeccccCCCCCC----------------------CCCcceeccccCcccH
Q 005712 188 TNRNKGYAFVKFANKEHAKRALTEM-KNPVICGKRCGTAPSE----------------------DNDTLFVGNICNTWTK 244 (681)
Q Consensus 188 tg~skG~aFVeF~~~e~A~~Al~~l-~g~~l~Gr~i~v~~~~----------------------~~~~L~VgnLp~~~te 244 (681)
....+|+++|+|.+.++|++|++.+ |+..+.| .+.+..+. ..++|||+|||+.+|+
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 87 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNK 87 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCH
Confidence 3578999999999999999999999 8888888 66654332 3579999999999999
Q ss_pred HHHHHHHhhcCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCCCccceecccCCCC
Q 005712 245 EAIKQKLKDYGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLR 318 (681)
Q Consensus 245 ~~L~~~F~~~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~gr~l~v~~a~~~~ 318 (681)
++|+++|++||. |..|+++.+ ++|||||+|.+.++|.+|+..|++..+ .++.|+|.++.+..
T Consensus 88 ~~l~~~F~~~G~--i~~v~i~~~------~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 88 TELERAFGYYGP--LRSVWVARN------PPGFAFVEFEDPRDAADAVRELDGRTL----CGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHHSC--EEEEEECSS------SCSEEEEEESSHHHHHHHHHHHSSSCS----SSSCCEEEECCCCC
T ss_pred HHHHHHHHhhCC--EEEEEEeeC------CCcEEEEEECCHHHHHHHHHHcCCCEE----CCeEEEEEEcCCCC
Confidence 999999999998 999999876 589999999999999999999999887 68999999998753
No 136
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.59 E-value=2.6e-15 Score=131.36 Aligned_cols=81 Identities=22% Similarity=0.425 Sum_probs=75.6
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeec---cccCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICG---KRCGT 224 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~G---r~i~v 224 (681)
...++|||+|||.++|+++|+++|++||.|..|+|+.++ +++++|||||+|.+.++|.+||+.|++..|.+ +.|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 467899999999999999999999999999999999996 79999999999999999999999999999998 89988
Q ss_pred CCCCC
Q 005712 225 APSED 229 (681)
Q Consensus 225 ~~~~~ 229 (681)
..+..
T Consensus 92 ~~a~~ 96 (105)
T 2dnh_A 92 KFADT 96 (105)
T ss_dssp EESCS
T ss_pred EECcc
Confidence 76654
No 137
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.59 E-value=2.2e-15 Score=141.79 Aligned_cols=85 Identities=16% Similarity=0.346 Sum_probs=79.4
Q ss_pred hccCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCC
Q 005712 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (681)
Q Consensus 145 ~~~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v 224 (681)
......++|||+|||.++|+++|+++|++||+|+.|+|+.++.++.++|||||+|.+.++|++||+.|++..|.|+.|.|
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 33457799999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 005712 225 APSED 229 (681)
Q Consensus 225 ~~~~~ 229 (681)
.++..
T Consensus 114 ~~a~~ 118 (156)
T 1h2v_Z 114 DWDAG 118 (156)
T ss_dssp EEESC
T ss_pred EECCC
Confidence 87754
No 138
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.59 E-value=2.2e-15 Score=134.50 Aligned_cols=81 Identities=31% Similarity=0.585 Sum_probs=76.3
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
...++|||+|||.++|+++|+++|++||.|+.|+|+.+. +++++|||||+|.+.++|++||+.|++..|.|+.|.|..+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 467899999999999999999999999999999999997 8999999999999999999999999999999999998766
Q ss_pred CC
Q 005712 228 ED 229 (681)
Q Consensus 228 ~~ 229 (681)
..
T Consensus 84 ~~ 85 (116)
T 2fy1_A 84 KK 85 (116)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 139
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.59 E-value=5.2e-15 Score=129.00 Aligned_cols=74 Identities=24% Similarity=0.478 Sum_probs=67.8
Q ss_pred ccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
...++|||+|||+.+|+++|+++|++||.|..|.|+ +|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 346899999999999999999999999999999986 459999999999999999999999999999888876
Q ss_pred ec
Q 005712 406 AR 407 (681)
Q Consensus 406 ~~ 407 (681)
..
T Consensus 81 ~~ 82 (103)
T 2dgu_A 81 KP 82 (103)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 140
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2.3e-15 Score=130.21 Aligned_cols=78 Identities=22% Similarity=0.428 Sum_probs=73.4
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEE-EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCe----eE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVI-RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN----SK 401 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~-~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~----i~ 401 (681)
..++|||+|||+.+++++|+++|++||.|. .|.|++++.++.++|||||+|.+.++|++||+.||+..|.|+. |+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~ 87 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFK 87 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEE
Confidence 468999999999999999999999999999 9999999999999999999999999999999999999999999 55
Q ss_pred EEE
Q 005712 402 VKL 404 (681)
Q Consensus 402 v~~ 404 (681)
|.+
T Consensus 88 v~~ 90 (99)
T 2div_A 88 LNY 90 (99)
T ss_dssp EEE
T ss_pred Eee
Confidence 554
No 141
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.59 E-value=3.1e-15 Score=128.24 Aligned_cols=78 Identities=18% Similarity=0.312 Sum_probs=73.8
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
..++|||+|||+.+++++|+++|++||.|..|.|+.+.. +.++|||||+|.+.++|.+||+.||+..|.|+.|+|.++
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 468999999999999999999999999999999999975 899999999999999999999999999999999988864
No 142
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.59 E-value=1.6e-15 Score=135.70 Aligned_cols=80 Identities=25% Similarity=0.357 Sum_probs=75.9
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
...++|||+|||.++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|++||+.|++..|.|+.|.|..+
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999987654
No 143
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.59 E-value=2e-15 Score=141.98 Aligned_cols=80 Identities=23% Similarity=0.481 Sum_probs=75.3
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcC--CeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIG--EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G--~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
..++|||+|||+++|+++|+++|++|| .|.+|+|++|+.+|+++|||||+|.+.++|.+||+.|++..|.|+.|.|..
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 999999999999999999999999999999999999999999999998876
Q ss_pred CC
Q 005712 227 SE 228 (681)
Q Consensus 227 ~~ 228 (681)
+.
T Consensus 134 a~ 135 (156)
T 3n9u_C 134 AT 135 (156)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 144
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.59 E-value=3.2e-15 Score=126.14 Aligned_cols=78 Identities=12% Similarity=0.272 Sum_probs=74.0
Q ss_pred ceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCC-cceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAK-RKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 328 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~-~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
.++|||+|||..+|+++|+++|++||.|..|.|+.+..++. ++|||||+|.+.++|.+|+..|||..|.|+.|+|++.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 47999999999999999999999999999999999987766 9999999999999999999999999999999999876
No 145
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.6e-15 Score=134.53 Aligned_cols=85 Identities=20% Similarity=0.312 Sum_probs=79.0
Q ss_pred ccCCCCEEEEcCCCccCCHHHHHHHHhhcCCeE--------EEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCee
Q 005712 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVI--------EVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI 217 (681)
Q Consensus 146 ~~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~--------~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l 217 (681)
.....++|||+|||.++|+++|+++|++||.|. .|+|++++.+++++|||||+|.+.++|++||+.|++..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345789999999999999999999999999999 699999999999999999999999999999999999999
Q ss_pred eccccCCCCCCCC
Q 005712 218 CGKRCGTAPSEDN 230 (681)
Q Consensus 218 ~Gr~i~v~~~~~~ 230 (681)
.|+.|.|..+...
T Consensus 91 ~g~~l~V~~a~~~ 103 (113)
T 2cpe_A 91 QGSKLKVSLARKK 103 (113)
T ss_dssp TTEECEEECSSCC
T ss_pred CCCEEEEEECCCC
Confidence 9999999877653
No 146
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.58 E-value=2.4e-15 Score=131.11 Aligned_cols=81 Identities=21% Similarity=0.425 Sum_probs=75.8
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
....++|||+|||+++|+++|+++|++|| |..|+|++++.+++++|||||+|.+.++|++|| .|++..|.|+.|.|..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34678999999999999999999999997 999999999999999999999999999999999 8999999999999877
Q ss_pred CCC
Q 005712 227 SED 229 (681)
Q Consensus 227 ~~~ 229 (681)
+..
T Consensus 90 a~~ 92 (103)
T 2dng_A 90 AEG 92 (103)
T ss_dssp CCC
T ss_pred ecC
Confidence 654
No 147
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.58 E-value=4.1e-15 Score=132.98 Aligned_cols=80 Identities=21% Similarity=0.406 Sum_probs=76.2
Q ss_pred ccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
...++|||+|||+.+++++|+++|++||.|..|.|++++.+++++|||||+|.+.++|.+||+.||+..|.|+.|+|+++
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 34689999999999999999999999999999999999889999999999999999999999999999999999998875
No 148
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4.6e-15 Score=128.87 Aligned_cols=77 Identities=23% Similarity=0.247 Sum_probs=70.3
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcC--CCeeeccccCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMK--NPVICGKRCGT 224 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~--g~~l~Gr~i~v 224 (681)
....++|||+|||+++|+++|+++|++||.|++|+|+++ +|||||+|.+.++|.+|++.|+ +..|.|++|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 346789999999999999999999999999999999864 7999999999999999999876 47899999999
Q ss_pred CCCCC
Q 005712 225 APSED 229 (681)
Q Consensus 225 ~~~~~ 229 (681)
..+..
T Consensus 87 ~~A~~ 91 (105)
T 1sjq_A 87 QFSNH 91 (105)
T ss_dssp CCCSS
T ss_pred EEcCC
Confidence 88764
No 149
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=1.3e-15 Score=132.25 Aligned_cols=84 Identities=27% Similarity=0.551 Sum_probs=76.4
Q ss_pred CEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCCC-
Q 005712 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED- 229 (681)
Q Consensus 151 ~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~~- 229 (681)
++|||+|||.++|+++|+++|++||+|..|+|+.+ ++|||||+|.+.++|++|++.|++..|.|+.|.|..+..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999876 789999999999999999999999999999998865532
Q ss_pred ---------------CCcceecccc
Q 005712 230 ---------------NDTLFVGNIC 239 (681)
Q Consensus 230 ---------------~~~L~VgnLp 239 (681)
..+|||++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCC
Confidence 4678999885
No 150
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.58 E-value=1.1e-15 Score=124.97 Aligned_cols=75 Identities=31% Similarity=0.533 Sum_probs=70.9
Q ss_pred EEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 152 tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
+|||+|||.++|+++|+++|++||+|..|+|+.++.+++++|||||+|.+.++|++|++ +++..|.|+.|.|..+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999998899999999999999999999997 8999999999887653
No 151
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.58 E-value=4.5e-15 Score=125.06 Aligned_cols=77 Identities=14% Similarity=0.330 Sum_probs=72.3
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (681)
..++|||+|||+.+++++|+++|++||.|..|.|+.+..+++++|||||+|.+.++|.+|| .+++..|.|+.|.|.+
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL-DQKEHRLDGRVIDPKK 86 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHH-HSSCEEETTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHH-HhCCCEECCEEEEEEe
Confidence 4579999999999999999999999999999999999989999999999999999999999 5688899999988875
No 152
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.58 E-value=1.7e-15 Score=133.70 Aligned_cols=83 Identities=19% Similarity=0.350 Sum_probs=77.7
Q ss_pred ccCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCC
Q 005712 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (681)
Q Consensus 146 ~~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~ 225 (681)
...+.++|||+|||.++|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+||+.|++..|.|+.|.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCC
Q 005712 226 PSE 228 (681)
Q Consensus 226 ~~~ 228 (681)
.+.
T Consensus 102 ~a~ 104 (110)
T 1oo0_B 102 WCF 104 (110)
T ss_dssp ESE
T ss_pred Ecc
Confidence 664
No 153
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.58 E-value=2.5e-15 Score=124.96 Aligned_cols=73 Identities=16% Similarity=0.326 Sum_probs=68.3
Q ss_pred CCEEEEcCCCccC------CHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeecc-cc
Q 005712 150 EHEIFIGGLDRDA------TQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGK-RC 222 (681)
Q Consensus 150 ~~tVfV~NLp~~~------teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr-~i 222 (681)
+++|||+|||..+ |+++|+++|++||+|..|+|+ +.+++++|||||+|.+.++|.+|++.||+..|.|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4799999999999 789999999999999999987 46899999999999999999999999999999999 88
Q ss_pred CC
Q 005712 223 GT 224 (681)
Q Consensus 223 ~v 224 (681)
.|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 154
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.6e-15 Score=132.99 Aligned_cols=80 Identities=18% Similarity=0.374 Sum_probs=74.6
Q ss_pred cccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEE
Q 005712 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (681)
Q Consensus 325 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (681)
....++|||+|||+.+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||.. |+..|.|+.|.|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 34568999999999999999999999999999999999998999999999999999999999987 99999999988875
Q ss_pred E
Q 005712 405 R 405 (681)
Q Consensus 405 ~ 405 (681)
+
T Consensus 103 a 103 (116)
T 1x4b_A 103 A 103 (116)
T ss_dssp C
T ss_pred C
Confidence 4
No 155
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=7.7e-15 Score=127.85 Aligned_cols=79 Identities=18% Similarity=0.312 Sum_probs=72.5
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEe
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (681)
..++|||+|||+.+++++|+++|++||.|..|.|+++..+ ++|||||+|.+.++|.+||..||+..|.|+.|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 4689999999999999999999999999999999998543 68999999999999999999999999999998888753
Q ss_pred c
Q 005712 407 R 407 (681)
Q Consensus 407 ~ 407 (681)
.
T Consensus 92 ~ 92 (103)
T 2cqi_A 92 T 92 (103)
T ss_dssp C
T ss_pred C
Confidence 3
No 156
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=2.2e-15 Score=131.40 Aligned_cols=81 Identities=26% Similarity=0.457 Sum_probs=75.9
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
..+.++|||+|||+++|+++|+++|++||.|..|+|+.+ ++.++|||||+|.+.++|++||+.|++..|.|+.|.|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 346789999999999999999999999999999999997 899999999999999999999999999999999999877
Q ss_pred CCC
Q 005712 227 SED 229 (681)
Q Consensus 227 ~~~ 229 (681)
+..
T Consensus 90 a~~ 92 (103)
T 2d9p_A 90 AQR 92 (103)
T ss_dssp CSS
T ss_pred ecc
Confidence 654
No 157
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.58 E-value=2.8e-15 Score=131.59 Aligned_cols=80 Identities=19% Similarity=0.360 Sum_probs=75.5
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
....++|||+|||+.+|+++|+++|++||.|..|+|+.++ +++++|||||+|.+.++|++||+.|++..|.|+.|.|..
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4567899999999999999999999999999999999997 999999999999999999999999999999999998765
Q ss_pred C
Q 005712 227 S 227 (681)
Q Consensus 227 ~ 227 (681)
+
T Consensus 105 a 105 (107)
T 3ulh_A 105 V 105 (107)
T ss_dssp E
T ss_pred e
Confidence 4
No 158
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.58 E-value=6.2e-15 Score=125.57 Aligned_cols=81 Identities=23% Similarity=0.358 Sum_probs=75.5
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
...++|||+|||.++|+++|+++|++||.|..|+|+++ +++++|||||+|.+.++|++|++.|++..|.|+.|.|..+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46789999999999999999999999999999999974 7899999999999999999999999999999999999877
Q ss_pred CCC
Q 005712 228 EDN 230 (681)
Q Consensus 228 ~~~ 230 (681)
...
T Consensus 84 ~~~ 86 (92)
T 2dgv_A 84 RNA 86 (92)
T ss_dssp SCC
T ss_pred CCC
Confidence 653
No 159
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.58 E-value=3.6e-15 Score=126.11 Aligned_cols=78 Identities=18% Similarity=0.390 Sum_probs=74.2
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
..++|||+|||..+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|+ .||+..|.|+.|+|.++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEET
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEc
Confidence 3579999999999999999999999999999999999889999999999999999999999 99999999999988864
No 160
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.58 E-value=2e-15 Score=127.34 Aligned_cols=81 Identities=26% Similarity=0.475 Sum_probs=75.2
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCC-ccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNR-NKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~-skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
..++|||+|||.++|+++|+++|++||.|..|+|+.+..++. ++|||||+|.+.++|++|++.|++..|.|+.|.|..+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 568999999999999999999999999999999999877666 9999999999999999999999999999999988765
Q ss_pred CC
Q 005712 228 ED 229 (681)
Q Consensus 228 ~~ 229 (681)
..
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 161
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.58 E-value=4.3e-15 Score=139.65 Aligned_cols=80 Identities=15% Similarity=0.270 Sum_probs=75.5
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccC--cEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYG--DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G--~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (681)
..++|||+|||+++|+++|+++|++|| .|..|.|+.++.+++++|||||+|.+.++|.+||..|||..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 357999999999999999999999999 999999999999999999999999999999999999999999999999987
Q ss_pred Ee
Q 005712 405 RA 406 (681)
Q Consensus 405 ~~ 406 (681)
+.
T Consensus 134 a~ 135 (156)
T 3n9u_C 134 AT 135 (156)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 162
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.6e-15 Score=131.16 Aligned_cols=80 Identities=24% Similarity=0.453 Sum_probs=75.2
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCC-CCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFST-NRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~t-g~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
...++|||+|||+++|+++|+++|++|| |..|+|++++.+ ++++|||||+|.+.++|++|| .|++..|.|+.|.|..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4668999999999999999999999999 999999999887 999999999999999999999 8999999999998877
Q ss_pred CCC
Q 005712 227 SED 229 (681)
Q Consensus 227 ~~~ 229 (681)
+..
T Consensus 91 a~~ 93 (104)
T 1wi8_A 91 ADQ 93 (104)
T ss_dssp CCC
T ss_pred ccC
Confidence 654
No 163
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=3.1e-15 Score=130.87 Aligned_cols=78 Identities=17% Similarity=0.394 Sum_probs=73.2
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
..++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||.. |+..|.|+.|.|.++
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 15 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEc
Confidence 468999999999999999999999999999999999998999999999999999999999988 999999998777653
No 164
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.57 E-value=5e-15 Score=126.14 Aligned_cols=77 Identities=18% Similarity=0.347 Sum_probs=72.7
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
..++|||+|||..+++++|+++|++||.|..|.|+++ ++.++|||||+|.+.++|.+||..||+..|.|+.|+|.++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4589999999999999999999999999999999984 7889999999999999999999999999999999888875
No 165
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.2e-15 Score=125.46 Aligned_cols=76 Identities=29% Similarity=0.525 Sum_probs=71.8
Q ss_pred CEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 151 ~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
++|||+|||.++|+++|+++|++||+|..|+|++++.+++++|||||+|.+.++|.+|++.++ ..+.|+.|.|..+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998899999999999999999999999999 9999999877654
No 166
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=2.3e-15 Score=129.94 Aligned_cols=79 Identities=15% Similarity=0.213 Sum_probs=74.9
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
..++|||+|||+.+++++|+++|++||.|..+.++.+..+++++|||||+|.+.++|++||+.||+..|.|+.|+|.+.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 4589999999999999999999999999998888888889999999999999999999999999999999999998875
No 167
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.57 E-value=1.6e-15 Score=138.40 Aligned_cols=81 Identities=20% Similarity=0.323 Sum_probs=76.4
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEE--EEEeecCCCCCccceEEEEecchhHHHHHHHhcCCC----eeecccc
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIE--VRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNP----VICGKRC 222 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~--v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~----~l~Gr~i 222 (681)
..++|||+|||+++|+++|+++|++||.|.. |+|++|+.+++++|||||+|.+. +|.+||..|++. .|.|+.|
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l 100 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTI 100 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEE
Confidence 5679999999999999999999999999977 99999999999999999999999 999999999999 9999999
Q ss_pred CCCCCCCC
Q 005712 223 GTAPSEDN 230 (681)
Q Consensus 223 ~v~~~~~~ 230 (681)
.|..+...
T Consensus 101 ~V~~a~~~ 108 (131)
T 2m2b_A 101 NVEFAKGS 108 (131)
T ss_dssp CCEECCCS
T ss_pred EEEECCCC
Confidence 99877654
No 168
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.7e-15 Score=130.97 Aligned_cols=80 Identities=28% Similarity=0.518 Sum_probs=76.0
Q ss_pred ccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
...++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||+.|||..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 34689999999999999999999999999999999999889999999999999999999999999999999999988875
No 169
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.57 E-value=1.8e-15 Score=129.68 Aligned_cols=78 Identities=14% Similarity=0.196 Sum_probs=74.2
Q ss_pred ceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 328 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
.++|||+|||+.+|+++|+++|++||.|..+.++.+..+++++|||||+|.+.++|++||+.||+..|.|+.|+|.+.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 589999999999999999999999999999999998889999999999999999999999999999999999988764
No 170
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=6.5e-15 Score=129.70 Aligned_cols=84 Identities=15% Similarity=0.313 Sum_probs=76.2
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCc-EEEEEEe-ecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CceecCCeeEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGD-VIRIVLA-RNMSTAKRKDYGFIDFSTHEAAVACINAIN--NKEFSDGNSKV 402 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~-v~~v~i~-~d~~~g~~rG~aFV~F~~~~~A~~Ai~~ln--g~~~~g~~i~v 402 (681)
..++|||+|||+.+|+++|+++|++||. |..|.|+ .+..++.++|||||+|.+.++|.+||..|| +..|.|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 3589999999999999999999999998 9999998 788889999999999999999999999996 58999999999
Q ss_pred EEEeccCC
Q 005712 403 KLRARLSN 410 (681)
Q Consensus 403 ~~~~~~~~ 410 (681)
.++.....
T Consensus 87 ~~a~~~~~ 94 (109)
T 2dis_A 87 DWAEPEID 94 (109)
T ss_dssp EESCSSCS
T ss_pred EEcCCCCC
Confidence 88654433
No 171
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.5e-14 Score=126.03 Aligned_cols=79 Identities=18% Similarity=0.418 Sum_probs=72.7
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEe
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (681)
..++|||+|||+.+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||. ++..|.|+.|.|.++.
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a~ 91 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLPN 91 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECCC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEecC
Confidence 45899999999999999999999999999999999999899999999999999999999997 4779999998887653
Q ss_pred c
Q 005712 407 R 407 (681)
Q Consensus 407 ~ 407 (681)
.
T Consensus 92 ~ 92 (103)
T 2cqg_A 92 S 92 (103)
T ss_dssp T
T ss_pred C
Confidence 3
No 172
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.5e-15 Score=131.16 Aligned_cols=81 Identities=23% Similarity=0.518 Sum_probs=76.5
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~ 228 (681)
..++|||+|||.++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||+.|++..|.|+.|.|..+.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45799999999999999999999999999999999998899999999999999999999999999999999999887765
Q ss_pred C
Q 005712 229 D 229 (681)
Q Consensus 229 ~ 229 (681)
.
T Consensus 87 ~ 87 (104)
T 1p1t_A 87 S 87 (104)
T ss_dssp C
T ss_pred C
Confidence 4
No 173
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.57 E-value=4.2e-15 Score=123.40 Aligned_cols=72 Identities=13% Similarity=0.124 Sum_probs=68.1
Q ss_pred ceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 328 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
+..|+|+||++.+|+++|+++|.+||+|..+.+.. ++|||||+|.+.++|.+|++.||+..+.|+.|+|.++
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 46899999999999999999999999999999965 6999999999999999999999999999999999876
No 174
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.57 E-value=3.7e-15 Score=137.36 Aligned_cols=82 Identities=23% Similarity=0.407 Sum_probs=77.5
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
...++|||+|||.++|+++|+++|++||+|+.|+|++++.+++++|||||+|.+.++|.+||+.|++..|.|+.|.|..+
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred CC
Q 005712 228 ED 229 (681)
Q Consensus 228 ~~ 229 (681)
..
T Consensus 120 ~~ 121 (139)
T 1u6f_A 120 AS 121 (139)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 175
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.57 E-value=1.4e-15 Score=130.52 Aligned_cols=80 Identities=13% Similarity=0.153 Sum_probs=75.1
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~ 228 (681)
..++|||+|||+++|+++|+++|++||.|..++++.++.+++++|||||+|.+.++|++||+.|++..|.|+.|.|..+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 46899999999999999999999999999999999998999999999999999999999999999999999999887654
No 176
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.57 E-value=1.8e-15 Score=123.79 Aligned_cols=74 Identities=16% Similarity=0.381 Sum_probs=70.7
Q ss_pred eeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEE
Q 005712 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (681)
Q Consensus 330 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (681)
+|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|++ ||+..|.|+.|.|.+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 74 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKK 74 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEEC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEe
Confidence 58999999999999999999999999999999998899999999999999999999997 999999999988864
No 177
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.57 E-value=4.7e-15 Score=134.90 Aligned_cols=79 Identities=14% Similarity=0.266 Sum_probs=75.4
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
..++|||+|||+.+|+++|+++|++||.|..|.|++++.++.++|||||+|.+.++|++||..||+..|.|+.|+|.++
T Consensus 45 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999888765
No 178
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.2e-14 Score=128.00 Aligned_cols=72 Identities=22% Similarity=0.445 Sum_probs=67.1
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC-----CeeE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD-----GNSK 401 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g-----~~i~ 401 (681)
..++|||+|||+.+|+++|+++|++||.|..|.|+.+ |||||+|.+.++|++||+.||+..|.| +.|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 4689999999999999999999999999999999876 899999999999999999999999999 7877
Q ss_pred EEEE
Q 005712 402 VKLR 405 (681)
Q Consensus 402 v~~~ 405 (681)
|.++
T Consensus 87 V~~a 90 (108)
T 1x4c_A 87 VKVD 90 (108)
T ss_dssp EEES
T ss_pred EEeC
Confidence 7764
No 179
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.56 E-value=1.3e-14 Score=133.65 Aligned_cols=80 Identities=20% Similarity=0.452 Sum_probs=75.8
Q ss_pred cccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEE
Q 005712 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (681)
Q Consensus 325 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (681)
....++|||+|||..+|+++|+++|++||.|..|.|++++.+++++|||||+|.+.++|.+||+.||+..|.|+.|+|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999988875
No 180
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.56 E-value=3.4e-15 Score=135.20 Aligned_cols=82 Identities=22% Similarity=0.386 Sum_probs=77.0
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
..+.++|||+|||.++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|++..|.|+.|.|..
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34678999999999999999999999999999999999988999999999999999999999999999999999998876
Q ss_pred CC
Q 005712 227 SE 228 (681)
Q Consensus 227 ~~ 228 (681)
+.
T Consensus 99 a~ 100 (126)
T 3ex7_B 99 CF 100 (126)
T ss_dssp SE
T ss_pred ec
Confidence 54
No 181
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.56 E-value=1e-14 Score=131.67 Aligned_cols=85 Identities=7% Similarity=0.149 Sum_probs=78.7
Q ss_pred ccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
...++|||+|||..+++++|+++|++||.|..|.|+.+. +++++|||||+|.+.++|.+||..||+..|.|+.|+|.++
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 456899999999999999999999999999999999997 8999999999999999999999999999999999999987
Q ss_pred eccCCC
Q 005712 406 ARLSNP 411 (681)
Q Consensus 406 ~~~~~~ 411 (681)
......
T Consensus 112 ~~~~~~ 117 (124)
T 2kt5_A 112 ASQIDL 117 (124)
T ss_dssp CCTTCC
T ss_pred CCCCCC
Confidence 654443
No 182
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.4e-15 Score=130.93 Aligned_cols=79 Identities=22% Similarity=0.262 Sum_probs=71.7
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
....++|||+|||+++|+++|+++|++||.| .|+|++++ +++++|||||+|.+.++|++||+ +++..|.++.|.|..
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3467899999999999999999999999955 99999997 89999999999999999999995 799999999998765
Q ss_pred CC
Q 005712 227 SE 228 (681)
Q Consensus 227 ~~ 228 (681)
+.
T Consensus 89 ~~ 90 (102)
T 1wez_A 89 NS 90 (102)
T ss_dssp EC
T ss_pred CC
Confidence 54
No 183
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=6.2e-15 Score=131.02 Aligned_cols=81 Identities=12% Similarity=0.248 Sum_probs=76.0
Q ss_pred ccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
...++|||+|||+.+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|| .||+..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 34689999999999999999999999999999999999989999999999999999999999 99999999999988875
Q ss_pred ec
Q 005712 406 AR 407 (681)
Q Consensus 406 ~~ 407 (681)
..
T Consensus 102 ~~ 103 (114)
T 2cq4_A 102 QA 103 (114)
T ss_dssp HH
T ss_pred CC
Confidence 43
No 184
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.56 E-value=3e-15 Score=129.88 Aligned_cols=82 Identities=21% Similarity=0.422 Sum_probs=73.5
Q ss_pred ccCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecC-CCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCC
Q 005712 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNF-STNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (681)
Q Consensus 146 ~~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~-~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v 224 (681)
.....++|||+|||+++|+++|+++|++|| |..|+|++++ .+++++|||||+|.+.++|.+|| .|++..|.|+.|.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 344679999999999999999999999999 9999999997 68999999999999999999999 89999999999998
Q ss_pred CCCCC
Q 005712 225 APSED 229 (681)
Q Consensus 225 ~~~~~ 229 (681)
..+..
T Consensus 93 ~~a~~ 97 (100)
T 2j76_E 93 DVADQ 97 (100)
T ss_dssp EECCC
T ss_pred EeccC
Confidence 87764
No 185
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.56 E-value=3.1e-15 Score=129.79 Aligned_cols=80 Identities=18% Similarity=0.425 Sum_probs=72.4
Q ss_pred cccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecC-CCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEE
Q 005712 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNM-STAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (681)
Q Consensus 325 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~-~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~ 403 (681)
....++|||+|||+.+++++|+++|++|| |..|.|+.+. .+++++|||||+|.+.++|.+|| .||+..|.|+.|.|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 34568999999999999999999999999 9999999997 68999999999999999999999 999999999998888
Q ss_pred EEe
Q 005712 404 LRA 406 (681)
Q Consensus 404 ~~~ 406 (681)
++.
T Consensus 94 ~a~ 96 (100)
T 2j76_E 94 VAD 96 (100)
T ss_dssp ECC
T ss_pred ecc
Confidence 753
No 186
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.3e-14 Score=127.80 Aligned_cols=76 Identities=16% Similarity=0.368 Sum_probs=70.3
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
..++|||+|||..+|+++|+++|++||.|..|.|+.+ +.++|||||+|.+.++|.+||+.||+..|.|+.|+|.++
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 4689999999999999999999999999999999654 558999999999999999999999999999999888764
No 187
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.56 E-value=2.4e-15 Score=137.31 Aligned_cols=80 Identities=16% Similarity=0.287 Sum_probs=75.2
Q ss_pred ccceeeeecCCCCCCCHHHHHhhhcccCcEEE--EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc----eecCCe
Q 005712 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIR--IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK----EFSDGN 399 (681)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~--v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~----~~~g~~ 399 (681)
...++|||+|||+.+|+++|+++|++||.|.. |+|++++.+++++|||||+|.+. +|.+||..||+. .|.|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 44689999999999999999999999999977 99999999999999999999999 999999999999 999999
Q ss_pred eEEEEEe
Q 005712 400 SKVKLRA 406 (681)
Q Consensus 400 i~v~~~~ 406 (681)
|.|.++.
T Consensus 100 l~V~~a~ 106 (131)
T 2m2b_A 100 INVEFAK 106 (131)
T ss_dssp CCCEECC
T ss_pred EEEEECC
Confidence 9888763
No 188
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.9e-15 Score=130.48 Aligned_cols=82 Identities=12% Similarity=0.137 Sum_probs=76.5
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
...++|||+|||+++|+++|+++|++||.|..++++.++.+++++|||||+|.+.++|++||+.|++..|.|+.|.|..+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 35689999999999999999999999999999999999899999999999999999999999999999999999988766
Q ss_pred CC
Q 005712 228 ED 229 (681)
Q Consensus 228 ~~ 229 (681)
..
T Consensus 93 ~~ 94 (98)
T 2cqp_A 93 SG 94 (98)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 189
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.56 E-value=1.6e-15 Score=128.81 Aligned_cols=79 Identities=25% Similarity=0.524 Sum_probs=73.6
Q ss_pred CEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCCCC
Q 005712 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSEDN 230 (681)
Q Consensus 151 ~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~~~ 230 (681)
++|||+|||.++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.+ |.+|+..|++..|.|+.|.|..+...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999999999999999999999 99999999999999999999877643
No 190
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=6.4e-15 Score=130.83 Aligned_cols=81 Identities=16% Similarity=0.309 Sum_probs=75.7
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
....++|||+|||.++|+++|+++|++||.|+.|+|+.++ +++++|||||+|.+.++|++||+.|++..|.|+.|.|..
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3467899999999999999999999999999999999986 599999999999999999999999999999999998876
Q ss_pred CC
Q 005712 227 SE 228 (681)
Q Consensus 227 ~~ 228 (681)
+.
T Consensus 91 a~ 92 (114)
T 2do0_A 91 DE 92 (114)
T ss_dssp CS
T ss_pred cc
Confidence 64
No 191
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.56 E-value=7e-15 Score=132.72 Aligned_cols=79 Identities=18% Similarity=0.350 Sum_probs=75.0
Q ss_pred ccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
...++|||+|||..+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|| .||+..|.|+.|+|.++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 34689999999999999999999999999999999999889999999999999999999999 89999999999988875
No 192
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=9e-15 Score=127.43 Aligned_cols=81 Identities=21% Similarity=0.433 Sum_probs=74.6
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
....++|||+|||.++|+++|+++|++||.|..|+|+.+.. .++|||||+|.+.++|++||+.|++..|.|+.|.|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44679999999999999999999999999999999998854 4899999999999999999999999999999999877
Q ss_pred CCC
Q 005712 227 SED 229 (681)
Q Consensus 227 ~~~ 229 (681)
+..
T Consensus 90 a~~ 92 (103)
T 2cq3_A 90 ATA 92 (103)
T ss_dssp CCS
T ss_pred ccc
Confidence 654
No 193
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.56 E-value=4.6e-15 Score=130.82 Aligned_cols=83 Identities=27% Similarity=0.427 Sum_probs=73.2
Q ss_pred ccCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCC
Q 005712 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (681)
Q Consensus 146 ~~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~ 225 (681)
.....++|||+|||.++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||+.+ +..|.|+.|.|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3346789999999999999999999999999999999999999999999999999999999999976 489999999887
Q ss_pred CCCC
Q 005712 226 PSED 229 (681)
Q Consensus 226 ~~~~ 229 (681)
.+..
T Consensus 100 ~a~~ 103 (109)
T 2rs2_A 100 VAFP 103 (109)
T ss_dssp ECCC
T ss_pred EccC
Confidence 6653
No 194
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=3.4e-15 Score=132.71 Aligned_cols=77 Identities=22% Similarity=0.372 Sum_probs=73.2
Q ss_pred CCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 150 ~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
.++|||+|||.++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|++|| .|++..|.|+.|.|..+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 479999999999999999999999999999999999999999999999999999999999 89999999999877654
No 195
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.1e-14 Score=127.17 Aligned_cols=77 Identities=16% Similarity=0.221 Sum_probs=71.7
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEE-EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIR-IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~-v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
..++|||+|||+.+|+++|+++|++||.|.. |.|+.+ .+++++|||||+|.+.++|.+||.. |+..|.|+.|.|.+.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 4589999999999999999999999999987 888888 7899999999999999999999987 999999999888765
No 196
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=7.7e-15 Score=127.86 Aligned_cols=81 Identities=25% Similarity=0.420 Sum_probs=74.3
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
....++|||+|||.++|+++|+++|++||.|..|+|++++. .++|||||+|.+.++|++||+.|++..|.|+.|.|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 34678999999999999999999999999999999999854 3789999999999999999999999999999999877
Q ss_pred CCC
Q 005712 227 SED 229 (681)
Q Consensus 227 ~~~ 229 (681)
+..
T Consensus 90 a~~ 92 (103)
T 2cqi_A 90 ATT 92 (103)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 197
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.4e-15 Score=126.23 Aligned_cols=77 Identities=21% Similarity=0.400 Sum_probs=72.5
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~ 403 (681)
..++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.|||..|.|+.++|.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 80 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQS 80 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeec
Confidence 35799999999999999999999999999999999998899999999999999999999999999999999886554
No 198
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.55 E-value=8.9e-15 Score=128.99 Aligned_cols=80 Identities=15% Similarity=0.322 Sum_probs=72.6
Q ss_pred ccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
...++|||+|||..+|+++|+++|++||.|..|.|+++..++.++|||||+|.+.++|.+||..+ +..|.|+.|.|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 45689999999999999999999999999999999999989999999999999999999999876 49999999888875
Q ss_pred e
Q 005712 406 A 406 (681)
Q Consensus 406 ~ 406 (681)
.
T Consensus 102 ~ 102 (109)
T 2rs2_A 102 F 102 (109)
T ss_dssp C
T ss_pred c
Confidence 3
No 199
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=2.5e-15 Score=123.41 Aligned_cols=76 Identities=16% Similarity=0.360 Sum_probs=72.5
Q ss_pred eeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 329 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++.++ ..|.|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998899999999999999999999999999 9999999988864
No 200
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1e-14 Score=129.09 Aligned_cols=78 Identities=18% Similarity=0.340 Sum_probs=71.9
Q ss_pred ceeeeecCCCCCCCHHHHH---hhhcccCcEEEEEEeecCCCC---CcceEEEEEeCCHHHHHHHHHHhCCceecCCeeE
Q 005712 328 VKTVFLDGVPPHWKENQIR---DQIKGYGDVIRIVLARNMSTA---KRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 401 (681)
Q Consensus 328 ~~~l~V~nLp~~~t~~~L~---~~F~~~G~v~~v~i~~d~~~g---~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~ 401 (681)
.++|||+|||+.+++++|+ ++|++||.|..|.|+.+..++ .++|||||+|.+.++|++||+.||+..|.|+.|+
T Consensus 15 ~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~ 94 (111)
T 2cpi_A 15 KNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLK 94 (111)
T ss_dssp SSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEE
Confidence 5799999999999999999 999999999999999987654 5669999999999999999999999999999988
Q ss_pred EEEE
Q 005712 402 VKLR 405 (681)
Q Consensus 402 v~~~ 405 (681)
|.++
T Consensus 95 V~~a 98 (111)
T 2cpi_A 95 ASLG 98 (111)
T ss_dssp EESC
T ss_pred EEec
Confidence 8764
No 201
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=5.4e-15 Score=129.21 Aligned_cols=80 Identities=24% Similarity=0.321 Sum_probs=73.6
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEE-EEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIE-VRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~-v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
...++|||+|||+++|+++|+++|++||.|.. |+|+.+ .+++++|||||+|.+.++|++||+. ++..|.|+.|.|..
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 36789999999999999999999999999987 889888 7899999999999999999999997 99999999998866
Q ss_pred CCC
Q 005712 227 SED 229 (681)
Q Consensus 227 ~~~ 229 (681)
+..
T Consensus 91 ~~~ 93 (104)
T 1wg5_A 91 SSR 93 (104)
T ss_dssp ECT
T ss_pred CCH
Confidence 543
No 202
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=5.8e-15 Score=127.03 Aligned_cols=80 Identities=18% Similarity=0.242 Sum_probs=73.9
Q ss_pred CCCCEEEEcCCCccCCHHHHH----HHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccC
Q 005712 148 KKEHEIFIGGLDRDATQEDVR----KVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~----~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~ 223 (681)
.+.++|||+|||+++|+++|+ ++|++||.|.+|+|++++.+ +|||||+|.+.++|++||+.||+..|.|+.|.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 367899999999999999999 99999999999999988665 88999999999999999999999999999999
Q ss_pred CCCCCCC
Q 005712 224 TAPSEDN 230 (681)
Q Consensus 224 v~~~~~~ 230 (681)
|..+...
T Consensus 84 V~~a~~~ 90 (96)
T 2dgx_A 84 VSLATGA 90 (96)
T ss_dssp EEECCCS
T ss_pred EEEcCCC
Confidence 9877653
No 203
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1e-14 Score=127.14 Aligned_cols=83 Identities=25% Similarity=0.579 Sum_probs=75.6
Q ss_pred ccCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCC
Q 005712 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (681)
Q Consensus 146 ~~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~ 225 (681)
...+.++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|++||.. +..|.|+.|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCCeEEEEE
Confidence 345678999999999999999999999999999999999999999999999999999999999984 678999999887
Q ss_pred CCCCC
Q 005712 226 PSEDN 230 (681)
Q Consensus 226 ~~~~~ 230 (681)
.+...
T Consensus 89 ~a~~~ 93 (103)
T 2cqg_A 89 LPNSK 93 (103)
T ss_dssp CCCTT
T ss_pred ecCCC
Confidence 77543
No 204
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.55 E-value=1.9e-15 Score=128.31 Aligned_cols=80 Identities=16% Similarity=0.377 Sum_probs=73.5
Q ss_pred eeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEecc
Q 005712 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARL 408 (681)
Q Consensus 329 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~~ 408 (681)
++|||+|||..+++++|+++|++||.|..|.|+++..++.++|||||+|.+.+ |.+|+..|||..|.|+.|+|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999989999999999999999 99999999999999999999886544
Q ss_pred C
Q 005712 409 S 409 (681)
Q Consensus 409 ~ 409 (681)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 205
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=8.2e-15 Score=127.10 Aligned_cols=75 Identities=15% Similarity=0.207 Sum_probs=68.1
Q ss_pred cceeeeecCCCC-CCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc--eecCCeeEEE
Q 005712 327 HVKTVFLDGVPP-HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK--EFSDGNSKVK 403 (681)
Q Consensus 327 ~~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~--~~~g~~i~v~ 403 (681)
..++|||+|||+ .+|+++|+++|++||.|..|.|+++ +|||||+|++.++|.+||+.||+. .|.|+.|.|.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 368999999999 9999999999999999999999865 589999999999999999999864 5999999998
Q ss_pred EEec
Q 005712 404 LRAR 407 (681)
Q Consensus 404 ~~~~ 407 (681)
++..
T Consensus 88 ~a~~ 91 (102)
T 1x4d_A 88 LSQK 91 (102)
T ss_dssp EECC
T ss_pred ECCC
Confidence 8743
No 206
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.3e-14 Score=123.33 Aligned_cols=76 Identities=22% Similarity=0.334 Sum_probs=72.1
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
..++|||+|||+.+|+++|+++|++| .|..|.|+++ .+++++|||||+|.+.++|.+||. ||+..|.|+.|.|.++
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 35799999999999999999999999 9999999999 789999999999999999999999 9999999999888875
No 207
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.1e-14 Score=128.20 Aligned_cols=81 Identities=21% Similarity=0.359 Sum_probs=73.9
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
....++|||+|||.++|+++|+++|++||.|..|+|+.+ +.++|||||+|.+.++|++||+.|++..|.|+.|.|..
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 346789999999999999999999999999999999654 56899999999999999999999999999999999988
Q ss_pred CCCC
Q 005712 227 SEDN 230 (681)
Q Consensus 227 ~~~~ 230 (681)
+...
T Consensus 96 a~~~ 99 (109)
T 1x4a_A 96 PRSG 99 (109)
T ss_dssp CCCC
T ss_pred cccC
Confidence 7653
No 208
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=5.8e-15 Score=128.23 Aligned_cols=74 Identities=16% Similarity=0.296 Sum_probs=67.3
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CceecCCeeEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN--NKEFSDGNSKVKL 404 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~ln--g~~~~g~~i~v~~ 404 (681)
..++|||+|||+.+|+++|+++|++||.|+.|.|+++ ||||||+|++.++|.+||+.|+ +..|.|+.|.|.+
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 3589999999999999999999999999999999875 7999999999999999999886 4789999988876
Q ss_pred Ee
Q 005712 405 RA 406 (681)
Q Consensus 405 ~~ 406 (681)
+.
T Consensus 89 A~ 90 (105)
T 1sjq_A 89 SN 90 (105)
T ss_dssp CS
T ss_pred cC
Confidence 53
No 209
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.55 E-value=6.5e-15 Score=128.93 Aligned_cols=80 Identities=16% Similarity=0.273 Sum_probs=74.0
Q ss_pred CCCEEEEcCCCccC------CHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeecc-c
Q 005712 149 KEHEIFIGGLDRDA------TQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGK-R 221 (681)
Q Consensus 149 ~~~tVfV~NLp~~~------teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr-~ 221 (681)
..++|||+|||+.+ |+++|+++|++||.|..|+|+ +.+|+++|||||+|.+.++|.+||..||+..|.|+ .
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 56899999999999 889999999999999999998 46899999999999999999999999999999999 9
Q ss_pred cCCCCCCCC
Q 005712 222 CGTAPSEDN 230 (681)
Q Consensus 222 i~v~~~~~~ 230 (681)
|.|..+.+.
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 998877653
No 210
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.54 E-value=3.4e-15 Score=122.06 Aligned_cols=74 Identities=30% Similarity=0.601 Sum_probs=69.7
Q ss_pred EEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 152 EIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 152 tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
+|||+|||.++|+++|+++|++||+|..|+|++++.+++++|||||+|.+.++|.+|++. ++..|.|+.|.|..
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 599999999999999999999999999999999999999999999999999999999985 88899999987754
No 211
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=2.8e-15 Score=130.06 Aligned_cols=82 Identities=16% Similarity=0.247 Sum_probs=72.7
Q ss_pred cCCCCEEEEcCCCc-cCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCC--CeeeccccC
Q 005712 147 IKKEHEIFIGGLDR-DATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKN--PVICGKRCG 223 (681)
Q Consensus 147 ~~~~~tVfV~NLp~-~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g--~~l~Gr~i~ 223 (681)
..++++|||+|||+ ++|+++|+++|++||.|++|+|+++ +|||||+|.+.++|.+|++.|++ ..|.|++|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 34788999999999 9999999999999999999999865 58999999999999999999885 459999999
Q ss_pred CCCCCCCCcce
Q 005712 224 TAPSEDNDTLF 234 (681)
Q Consensus 224 v~~~~~~~~L~ 234 (681)
|..+....+|.
T Consensus 86 V~~a~~~~~~~ 96 (102)
T 1x4d_A 86 VHLSQKYKRIK 96 (102)
T ss_dssp EEEECCCTTSS
T ss_pred EEECCCCCCCC
Confidence 98887655554
No 212
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=2.8e-14 Score=124.02 Aligned_cols=77 Identities=23% Similarity=0.445 Sum_probs=70.6
Q ss_pred ccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
...++|||+|||..+|+++|+++|+.|+ .|.++.+..++.++|||||+|.+.++|.+||..||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 3468999999999999999999999884 5778888888999999999999999999999999999999999888875
No 213
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.6e-15 Score=133.58 Aligned_cols=80 Identities=8% Similarity=0.080 Sum_probs=74.1
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcE-EEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDV-IRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v-~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
..++|||+|||+.+|+++|+++|++||.| ..|.|+++. +++++|||||+|.+.++|.+||.. |+..|.|+.|.|.++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 45799999999999999999999999999 889999997 899999999999999999999976 999999999999886
Q ss_pred ecc
Q 005712 406 ARL 408 (681)
Q Consensus 406 ~~~ 408 (681)
...
T Consensus 92 ~~~ 94 (114)
T 2cpy_A 92 TLE 94 (114)
T ss_dssp CHH
T ss_pred CHH
Confidence 543
No 214
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=8.7e-15 Score=128.88 Aligned_cols=83 Identities=20% Similarity=0.402 Sum_probs=76.5
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCC-eEEEEEe-ecCCCCCccceEEEEecchhHHHHHHHhcC--CCeeeccccC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGE-VIEVRLH-KNFSTNRNKGYAFVKFANKEHAKRALTEMK--NPVICGKRCG 223 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~-V~~v~i~-~d~~tg~skG~aFVeF~~~e~A~~Al~~l~--g~~l~Gr~i~ 223 (681)
.+.++|||+|||.++|+++|+++|++||. |..|+|+ .++.+++++|||||+|.+.++|.+|++.|+ +..|.|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 46789999999999999999999999998 9999998 788889999999999999999999999996 5899999999
Q ss_pred CCCCCCC
Q 005712 224 TAPSEDN 230 (681)
Q Consensus 224 v~~~~~~ 230 (681)
|..+...
T Consensus 86 V~~a~~~ 92 (109)
T 2dis_A 86 VDWAEPE 92 (109)
T ss_dssp EEESCSS
T ss_pred EEEcCCC
Confidence 8777643
No 215
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.54 E-value=7.5e-15 Score=128.54 Aligned_cols=78 Identities=18% Similarity=0.306 Sum_probs=71.7
Q ss_pred cceeeeecCCCCCC------CHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCC-e
Q 005712 327 HVKTVFLDGVPPHW------KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG-N 399 (681)
Q Consensus 327 ~~~~l~V~nLp~~~------t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~-~ 399 (681)
..++|||+|||+.+ |+++|+++|++||.|..|.|+ ..+|+++|||||+|.+.++|.+||..|||..|.|+ .
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 35799999999999 789999999999999999998 35789999999999999999999999999999998 9
Q ss_pred eEEEEEe
Q 005712 400 SKVKLRA 406 (681)
Q Consensus 400 i~v~~~~ 406 (681)
|+|.++.
T Consensus 92 l~V~~a~ 98 (105)
T 2nlw_A 92 FRVNLFT 98 (105)
T ss_dssp EEEECSC
T ss_pred EEEEEcc
Confidence 8887653
No 216
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3.2e-14 Score=123.33 Aligned_cols=75 Identities=16% Similarity=0.315 Sum_probs=68.0
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh--CCceecCCeeEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI--NNKEFSDGNSKVKL 404 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~l--ng~~~~g~~i~v~~ 404 (681)
..++|||+|||+.+|+++|+++|++||.|..|.|+++ +|||||+|++.++|.+||+.| ++..|.|+.|.|.+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 87 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQY 87 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEE
Confidence 4689999999999999999999999999999998764 799999999999999999977 57789999999988
Q ss_pred Eec
Q 005712 405 RAR 407 (681)
Q Consensus 405 ~~~ 407 (681)
+..
T Consensus 88 a~~ 90 (101)
T 2cq1_A 88 SNH 90 (101)
T ss_dssp CSC
T ss_pred cCc
Confidence 643
No 217
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3.1e-15 Score=133.06 Aligned_cols=79 Identities=18% Similarity=0.174 Sum_probs=73.2
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCe-EEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEV-IEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V-~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
...++|||+|||+++|+++|+++|++||.| ..|+|++++ +++++|||||+|.+.++|++||+. ++..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 467899999999999999999999999999 899999997 899999999999999999999987 99999999887765
Q ss_pred CC
Q 005712 227 SE 228 (681)
Q Consensus 227 ~~ 228 (681)
+.
T Consensus 91 a~ 92 (114)
T 2cpy_A 91 VT 92 (114)
T ss_dssp EC
T ss_pred CC
Confidence 53
No 218
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.9e-14 Score=124.93 Aligned_cols=75 Identities=23% Similarity=0.400 Sum_probs=69.0
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
..++|||+|||+.+|+++|+++|++||.| .|+.+ .+++++|||||+|.+.++|++||..||+..|.|+.|+|.++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 46899999999999999999999999987 56666 67899999999999999999999999999999999888875
No 219
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.54 E-value=8.3e-15 Score=132.28 Aligned_cols=82 Identities=17% Similarity=0.330 Sum_probs=77.1
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
...++|||+|||.++|+++|+++|++||.|..|+|+.++ +++++|||||+|.+.++|.+||+.|++..|.|+.|.|..+
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 467899999999999999999999999999999999997 8999999999999999999999999999999999998877
Q ss_pred CCC
Q 005712 228 EDN 230 (681)
Q Consensus 228 ~~~ 230 (681)
...
T Consensus 112 ~~~ 114 (124)
T 2kt5_A 112 ASQ 114 (124)
T ss_dssp CCT
T ss_pred CCC
Confidence 653
No 220
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=8.1e-15 Score=124.67 Aligned_cols=80 Identities=21% Similarity=0.396 Sum_probs=74.6
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
....++|||+|||+++|+++|+++|++| .|..|+|+++ .+++++|||||+|.+.++|++||+ |++..|.|+.|.|..
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 3467899999999999999999999999 9999999999 889999999999999999999999 999999999998876
Q ss_pred CCC
Q 005712 227 SED 229 (681)
Q Consensus 227 ~~~ 229 (681)
+..
T Consensus 84 a~~ 86 (91)
T 2dgw_A 84 EKS 86 (91)
T ss_dssp ESS
T ss_pred CCc
Confidence 654
No 221
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.54 E-value=9.1e-15 Score=131.97 Aligned_cols=79 Identities=22% Similarity=0.490 Sum_probs=75.1
Q ss_pred CCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCCC
Q 005712 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED 229 (681)
Q Consensus 150 ~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~~ 229 (681)
.++|||+|||.++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|| .|++..|.|+.|.|..+..
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 479999999999999999999999999999999999899999999999999999999999 7999999999999887654
No 222
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=4.9e-15 Score=131.11 Aligned_cols=88 Identities=19% Similarity=0.338 Sum_probs=78.8
Q ss_pred ccCCCCEEEEcCCCccCCHHHHH---HHHhhcCCeEEEEEeecCCCC---CccceEEEEecchhHHHHHHHhcCCCeeec
Q 005712 146 KIKKEHEIFIGGLDRDATQEDVR---KVFERIGEVIEVRLHKNFSTN---RNKGYAFVKFANKEHAKRALTEMKNPVICG 219 (681)
Q Consensus 146 ~~~~~~tVfV~NLp~~~teedL~---~~F~~~G~V~~v~i~~d~~tg---~skG~aFVeF~~~e~A~~Al~~l~g~~l~G 219 (681)
.....++|||+|||+++|+++|+ ++|++||+|..|+|+++..++ +++|||||+|.+.++|++||+.||+..|.|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34467899999999999999999 999999999999999887654 566999999999999999999999999999
Q ss_pred cccCCCCCCCCCcc
Q 005712 220 KRCGTAPSEDNDTL 233 (681)
Q Consensus 220 r~i~v~~~~~~~~L 233 (681)
+.|.|..+....+.
T Consensus 91 r~l~V~~a~~k~~~ 104 (111)
T 2cpi_A 91 RTLKASLGTTKYCS 104 (111)
T ss_dssp EEEEEESCCCCSCS
T ss_pred EEEEEEeccccccc
Confidence 99999888765543
No 223
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.54 E-value=4.8e-15 Score=123.22 Aligned_cols=72 Identities=18% Similarity=0.356 Sum_probs=67.1
Q ss_pred eeeeecCCCCCC------CHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCC-eeE
Q 005712 329 KTVFLDGVPPHW------KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG-NSK 401 (681)
Q Consensus 329 ~~l~V~nLp~~~------t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~-~i~ 401 (681)
++|||+|||..+ |+++|+++|++||.|..|.|++ .+++++|||||+|.+.++|.+||..|||..|.|+ .|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 7799999999999999999883 5789999999999999999999999999999999 776
Q ss_pred E
Q 005712 402 V 402 (681)
Q Consensus 402 v 402 (681)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 5
No 224
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=8.7e-15 Score=126.59 Aligned_cols=85 Identities=31% Similarity=0.537 Sum_probs=78.4
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
..+.++|||+|||.++|+++|+++|++||.|..|+|+++ +|||||+|.+.++|.+|++.|++..|.|+.|.|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 446789999999999999999999999999999999753 79999999999999999999999999999999999
Q ss_pred CCCCCcceecc
Q 005712 227 SEDNDTLFVGN 237 (681)
Q Consensus 227 ~~~~~~L~Vgn 237 (681)
+.....+.+++
T Consensus 86 a~~~~~~~~g~ 96 (99)
T 2cpj_A 86 ACHSASLTSGP 96 (99)
T ss_dssp SSCCSCCCCCC
T ss_pred cCCCCCCCCCC
Confidence 98888877765
No 225
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1.5e-14 Score=127.35 Aligned_cols=76 Identities=18% Similarity=0.251 Sum_probs=70.4
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
...+|||+|||+.+|+++|+++|++| .|..|.|+.+.. |+++|||||+|.+.++|.+|| .||+..|.|+.|.|..+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 35799999999999999999999999 899999999965 999999999999999999999 79999999999887654
No 226
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=8.3e-15 Score=130.63 Aligned_cols=80 Identities=23% Similarity=0.488 Sum_probs=75.4
Q ss_pred CCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCCC
Q 005712 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSED 229 (681)
Q Consensus 150 ~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~~ 229 (681)
.++|||+|||.++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|++||+. ++..|.|+.|.|..+..
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 47999999999999999999999999999999999999999999999999999999999987 99999999999887765
Q ss_pred C
Q 005712 230 N 230 (681)
Q Consensus 230 ~ 230 (681)
.
T Consensus 106 ~ 106 (116)
T 1x4b_A 106 R 106 (116)
T ss_dssp C
T ss_pred C
Confidence 3
No 227
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.53 E-value=4.1e-15 Score=136.41 Aligned_cols=82 Identities=24% Similarity=0.455 Sum_probs=77.5
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
...++|||+|||.++|+++|+++|++||.|+.|+|+.++.+++++|||||+|.+.++|++||+.|++..|.|+.|.|..+
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999998877
Q ss_pred CC
Q 005712 228 ED 229 (681)
Q Consensus 228 ~~ 229 (681)
..
T Consensus 125 ~~ 126 (135)
T 2lea_A 125 RY 126 (135)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 228
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.53 E-value=1.8e-14 Score=128.29 Aligned_cols=68 Identities=21% Similarity=0.436 Sum_probs=62.8
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 401 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~ 401 (681)
..++|||+|||+.+|+++|+++|++||.|..|.|+.+ |||||+|.+.++|++||+.||+..|.|+.|+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~ 82 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 82 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEee
Confidence 4689999999999999999999999999999999765 8999999999999999999999999999833
No 229
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.53 E-value=3.9e-15 Score=136.29 Aligned_cols=79 Identities=19% Similarity=0.202 Sum_probs=73.3
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCC---eEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGE---VIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~---V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~ 223 (681)
....++|||+|||+++|+++|+++|++||. |..|+|++++. |+++|||||+|.+.++|++||+ +++..|.|+.|.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 346789999999999999999999999999 89999999977 9999999999999999999999 999999999887
Q ss_pred CCCC
Q 005712 224 TAPS 227 (681)
Q Consensus 224 v~~~ 227 (681)
|..+
T Consensus 119 V~~a 122 (136)
T 2hgl_A 119 VFKS 122 (136)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 7655
No 230
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.53 E-value=1e-14 Score=125.42 Aligned_cols=79 Identities=20% Similarity=0.214 Sum_probs=70.0
Q ss_pred hccCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCe--eecccc
Q 005712 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPV--ICGKRC 222 (681)
Q Consensus 145 ~~~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~--l~Gr~i 222 (681)
....++++|||+|||+++|+++|+++|++||.|++|+|++ +||+|||+|.+.++|.+|++.|++.. |.|++|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 3445789999999999999999999999999999999974 47999999999999999999998875 779999
Q ss_pred CCCCCCC
Q 005712 223 GTAPSED 229 (681)
Q Consensus 223 ~v~~~~~ 229 (681)
.|..+..
T Consensus 90 ~V~~S~~ 96 (100)
T 3r27_A 90 FVNYSTS 96 (100)
T ss_dssp EEEECSC
T ss_pred EEEeccc
Confidence 8877653
No 231
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.53 E-value=1e-14 Score=134.39 Aligned_cols=78 Identities=21% Similarity=0.534 Sum_probs=74.7
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
..++|||+|||.++|+++|+++|++||+|..|+|++++.+++++|||||+|.+.++|++||+.|++..|.|+.|.|..
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999987764
No 232
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=2.8e-14 Score=124.44 Aligned_cols=75 Identities=11% Similarity=0.252 Sum_probs=67.5
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc--eecCCeeEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNK--EFSDGNSKVKL 404 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~--~~~g~~i~v~~ 404 (681)
..++|||+|||+.+++++|+++|++||.|..|.|+++ ||||||+|++.++|.+|++.|++. .|.|+.|.|.+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 4589999999999999999999999999999998764 799999999999999999988654 59999999988
Q ss_pred Eec
Q 005712 405 RAR 407 (681)
Q Consensus 405 ~~~ 407 (681)
+..
T Consensus 88 a~~ 90 (104)
T 1wex_A 88 STS 90 (104)
T ss_dssp CSS
T ss_pred ccC
Confidence 643
No 233
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.53 E-value=4.6e-15 Score=132.78 Aligned_cols=78 Identities=21% Similarity=0.223 Sum_probs=72.4
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCC---eEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGE---VIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~---V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v 224 (681)
...++|||+|||+++|+++|+++|++||. |..|+|++++. ++++|||||+|.+.++|++||+ +++..|.|+.|.|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 46789999999999999999999999999 89999999976 9999999999999999999999 9999999998876
Q ss_pred CCC
Q 005712 225 APS 227 (681)
Q Consensus 225 ~~~ 227 (681)
..+
T Consensus 93 ~~a 95 (118)
T 2db1_A 93 FKS 95 (118)
T ss_dssp EEE
T ss_pred EEC
Confidence 544
No 234
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=2.8e-14 Score=121.09 Aligned_cols=71 Identities=24% Similarity=0.463 Sum_probs=66.9
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
..++|||+|||..+|+++|+++|++||.|..|.|+ +|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 46899999999999999999999999999999997 679999999999999999999999999999888765
No 235
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.4e-14 Score=128.70 Aligned_cols=76 Identities=13% Similarity=0.359 Sum_probs=70.3
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v 224 (681)
...++|||+|||.++|+++|+++|++||.|..|+|++++ ++.++|||||+|.+.++|.+||+.||+..|.++.+.+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 356899999999999999999999999999999999997 8999999999999999999999999999997665543
No 236
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.53 E-value=2.4e-14 Score=126.36 Aligned_cols=91 Identities=18% Similarity=0.330 Sum_probs=77.2
Q ss_pred CCccceecccCCCCCCChhhcccceeeeecCCCCC-CCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHH
Q 005712 305 PERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPH-WKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAA 383 (681)
Q Consensus 305 ~gr~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A 383 (681)
.+..+.+..+.......+ ....++|||+|||+. +|+++|+++|++||.|..|.| ++|||||+|.+.++|
T Consensus 6 ~g~~~~~~~s~~~~~~~~--~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A 75 (110)
T 1wf1_A 6 SGMSLKLQASNVTNKNDP--KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHA 75 (110)
T ss_dssp CSCCCCCCCCCSCCSCCC--TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHH
T ss_pred CCcccccccCCCCCCCCC--CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHH
Confidence 456677766655433332 234579999999999 999999999999999999998 578999999999999
Q ss_pred HHHHHHhCCceecCCeeEEEEE
Q 005712 384 VACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 384 ~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
.+||..||+..|.|+.|+|.++
T Consensus 76 ~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 76 RAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp HHHHHHHTTCEETTEECCEEES
T ss_pred HHHHHHcCCCEECCeEEEEEEC
Confidence 9999999999999999888875
No 237
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.52 E-value=1.5e-14 Score=124.33 Aligned_cols=74 Identities=14% Similarity=0.269 Sum_probs=67.7
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce--ecCCeeEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKE--FSDGNSKVKL 404 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~--~~g~~i~v~~ 404 (681)
++++|||+|||..+|+++|+++|++||.|+.|.+++ +||||||+|++.++|.+||+.||+.. |.|+.|.|.+
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~ 93 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNY 93 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEe
Confidence 468999999999999999999999999999999975 37899999999999999999999875 7899998887
Q ss_pred Ee
Q 005712 405 RA 406 (681)
Q Consensus 405 ~~ 406 (681)
+.
T Consensus 94 S~ 95 (100)
T 3r27_A 94 ST 95 (100)
T ss_dssp CS
T ss_pred cc
Confidence 53
No 238
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4.1e-14 Score=125.61 Aligned_cols=78 Identities=19% Similarity=0.374 Sum_probs=72.4
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee--------cCC
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF--------SDG 398 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~--------~g~ 398 (681)
..++|||+|||..+|+++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+||..|||..| .++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 45799999999999999999999999999999999997 899999999999999999999999999999 567
Q ss_pred eeEEEEE
Q 005712 399 NSKVKLR 405 (681)
Q Consensus 399 ~i~v~~~ 405 (681)
.|.|.++
T Consensus 103 ~l~v~~a 109 (114)
T 1x5o_A 103 PLLCKFS 109 (114)
T ss_dssp CBEEEEC
T ss_pred ceeEEcc
Confidence 7777765
No 239
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.52 E-value=1.3e-14 Score=129.83 Aligned_cols=78 Identities=9% Similarity=0.140 Sum_probs=73.0
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCc---EEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGD---VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~---v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~ 403 (681)
..++|||+|||+++|+++|+++|++||. |..|.|+.+.. ++++|||||+|.+.++|++||+ ||+..|.|+.|.|.
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 4579999999999999999999999999 89999999976 9999999999999999999998 99999999999888
Q ss_pred EEe
Q 005712 404 LRA 406 (681)
Q Consensus 404 ~~~ 406 (681)
++.
T Consensus 94 ~a~ 96 (118)
T 2db1_A 94 KSH 96 (118)
T ss_dssp EEC
T ss_pred ECC
Confidence 764
No 240
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.52 E-value=5.2e-15 Score=130.00 Aligned_cols=80 Identities=16% Similarity=0.193 Sum_probs=73.7
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCC---eEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGE---VIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~---V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~ 223 (681)
....++|||+|||+++|+++|+++|++||. |..|+|++++. |+++|||||+|.+.++|++||+ +++..|.|+.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 346789999999999999999999999998 89999999977 9999999999999999999999 999999999988
Q ss_pred CCCCC
Q 005712 224 TAPSE 228 (681)
Q Consensus 224 v~~~~ 228 (681)
|..+.
T Consensus 86 V~~a~ 90 (107)
T 2lmi_A 86 VYEIN 90 (107)
T ss_dssp CEECC
T ss_pred EEECC
Confidence 76653
No 241
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=6.9e-15 Score=132.85 Aligned_cols=81 Identities=16% Similarity=0.187 Sum_probs=74.1
Q ss_pred ccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
...++|||+|||+.+|+++|+++|++||.|..+.++.+..+++++|||||+|.+.++|.+||. ||+..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 345899999999999999999999999999887777777799999999999999999999998 9999999999999886
Q ss_pred ec
Q 005712 406 AR 407 (681)
Q Consensus 406 ~~ 407 (681)
..
T Consensus 102 ~~ 103 (124)
T 1wel_A 102 TK 103 (124)
T ss_dssp CH
T ss_pred CH
Confidence 44
No 242
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.52 E-value=9.5e-15 Score=133.74 Aligned_cols=77 Identities=8% Similarity=0.132 Sum_probs=72.5
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCc---EEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGD---VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~---v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~ 403 (681)
..++|||+|||+++|+++|+++|++||. |..|.|+++.. ++++|||||+|.+.++|++||+ ||+..|.|+.|.|.
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 4579999999999999999999999999 89999999976 9999999999999999999998 99999999998887
Q ss_pred EE
Q 005712 404 LR 405 (681)
Q Consensus 404 ~~ 405 (681)
++
T Consensus 121 ~a 122 (136)
T 2hgl_A 121 KS 122 (136)
T ss_dssp EC
T ss_pred EC
Confidence 65
No 243
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=9.9e-15 Score=128.43 Aligned_cols=76 Identities=25% Similarity=0.396 Sum_probs=69.8
Q ss_pred CCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCC
Q 005712 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (681)
Q Consensus 150 ~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~ 228 (681)
.++|||+|||+++|+++|+++|++| .|..|+|++++. |+++|||||+|.+.++|++|| .+++..|.|+.|.|..+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3689999999999999999999999 899999999965 999999999999999999999 589999999988776553
No 244
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=7.8e-15 Score=130.50 Aligned_cols=81 Identities=15% Similarity=0.244 Sum_probs=70.0
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEe
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (681)
..++|||+|||+.+|+++|+++|++||.|..|.+..+..++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 103 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGK 103 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEcc
Confidence 46899999999999999999999999998443333222378899999999999999999999999999999999998764
Q ss_pred c
Q 005712 407 R 407 (681)
Q Consensus 407 ~ 407 (681)
.
T Consensus 104 ~ 104 (115)
T 2cpx_A 104 N 104 (115)
T ss_dssp C
T ss_pred C
Confidence 3
No 245
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.8e-15 Score=134.59 Aligned_cols=80 Identities=19% Similarity=0.267 Sum_probs=73.2
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
...++|||+|||+++|+++|+++|++||.|..+.++.+..+++++|||||+|.+.++|.+||+ |++..|.|+.|.|..+
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 366899999999999999999999999999987777777899999999999999999999999 9999999999877655
Q ss_pred C
Q 005712 228 E 228 (681)
Q Consensus 228 ~ 228 (681)
.
T Consensus 102 ~ 102 (124)
T 1wel_A 102 T 102 (124)
T ss_dssp C
T ss_pred C
Confidence 3
No 246
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.5e-14 Score=127.60 Aligned_cols=83 Identities=20% Similarity=0.435 Sum_probs=75.5
Q ss_pred hccCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCC
Q 005712 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (681)
Q Consensus 145 ~~~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v 224 (681)
......++|||+|||.++|+++|+++|++||.|..|+|+++. +.++|||||+|.+.++|++|++.|++..|.|+.|.|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 334578999999999999999999999999999999999884 458999999999999999999999999999999998
Q ss_pred CCCCC
Q 005712 225 APSED 229 (681)
Q Consensus 225 ~~~~~ 229 (681)
..+..
T Consensus 102 ~~a~~ 106 (109)
T 2err_A 102 NNATA 106 (109)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 77654
No 247
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.7e-14 Score=127.19 Aligned_cols=79 Identities=14% Similarity=0.346 Sum_probs=73.0
Q ss_pred ccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
...++|||+|||..+|+++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 356899999999999999999999999999999999885 458999999999999999999999999999999988875
Q ss_pred e
Q 005712 406 A 406 (681)
Q Consensus 406 ~ 406 (681)
.
T Consensus 105 ~ 105 (109)
T 2err_A 105 T 105 (109)
T ss_dssp C
T ss_pred C
Confidence 3
No 248
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=7.1e-14 Score=120.81 Aligned_cols=73 Identities=29% Similarity=0.475 Sum_probs=66.9
Q ss_pred cccceeeeecCCCCCCCHHHHHhhhccc--CcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEE
Q 005712 325 MAHVKTVFLDGVPPHWKENQIRDQIKGY--GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 402 (681)
Q Consensus 325 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~--G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v 402 (681)
....++|||+|||+.+|+++|+++|++| |.|..|.++ +|||||+|.+.++|.+||..||+..|.|+.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 4456899999999999999999999999 999999874 679999999999999999999999999999888
Q ss_pred EEE
Q 005712 403 KLR 405 (681)
Q Consensus 403 ~~~ 405 (681)
.++
T Consensus 84 ~~a 86 (99)
T 2cpd_A 84 TLA 86 (99)
T ss_dssp ECC
T ss_pred EEC
Confidence 765
No 249
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.51 E-value=7e-15 Score=135.06 Aligned_cols=79 Identities=22% Similarity=0.268 Sum_probs=72.1
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
...++|||+|||+++|+++|+++|++|| |+.|+|++++. ++++|||||+|.+.++|++|| .+++..|.++.|.|..+
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 4678999999999999999999999999 67999999975 999999999999999999999 78999999999988766
Q ss_pred CC
Q 005712 228 ED 229 (681)
Q Consensus 228 ~~ 229 (681)
..
T Consensus 121 ~~ 122 (139)
T 2hgn_A 121 ST 122 (139)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 250
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.51 E-value=1.4e-14 Score=127.73 Aligned_cols=74 Identities=15% Similarity=0.235 Sum_probs=68.5
Q ss_pred ceeeeecCCCCCCCHHHHHhhhcccC-cEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 328 VKTVFLDGVPPHWKENQIRDQIKGYG-DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 328 ~~~l~V~nLp~~~t~~~L~~~F~~~G-~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
.++|||+|||+.+|+++|+++|++|| .|..|.|+.. .++|||||+|.+.++|++||+.|||..|.|+.|+|.++
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 57999999999999999999999999 8999998643 47999999999999999999999999999999888765
No 251
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.8e-14 Score=124.83 Aligned_cols=75 Identities=24% Similarity=0.425 Sum_probs=69.6
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEe
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (681)
..++|||+|||..+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+||..||+..|.|+.|+|.++.
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 4679999999999999999999999999999999876 7899999999999999999999999999998888754
Q ss_pred c
Q 005712 407 R 407 (681)
Q Consensus 407 ~ 407 (681)
.
T Consensus 98 ~ 98 (109)
T 1x4g_A 98 E 98 (109)
T ss_dssp C
T ss_pred C
Confidence 3
No 252
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=1.3e-14 Score=130.41 Aligned_cols=78 Identities=24% Similarity=0.264 Sum_probs=70.7
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCe----EEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEV----IEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCG 223 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V----~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~ 223 (681)
...++|||+|||+++|+++|+++|++||.| ..|+|+++ .+|+++|||||+|.+.++|++||+. ++..|.++.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 467899999999999999999999999985 68999998 5899999999999999999999986 99999999886
Q ss_pred CCCC
Q 005712 224 TAPS 227 (681)
Q Consensus 224 v~~~ 227 (681)
|..+
T Consensus 99 V~~a 102 (123)
T 2dha_A 99 LFRS 102 (123)
T ss_dssp CEEE
T ss_pred EEEC
Confidence 6543
No 253
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=2.6e-14 Score=129.29 Aligned_cols=78 Identities=18% Similarity=0.352 Sum_probs=70.5
Q ss_pred cceeeeecCCCCCCCHHHHH----hhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEE
Q 005712 327 HVKTVFLDGVPPHWKENQIR----DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 402 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~----~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v 402 (681)
..++|||+|||+.+++++|+ ++|++||.|..|.+.. +++++|||||+|.+.++|.+||..|||..|.|+.|+|
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 35799999999999999876 6999999999998854 5789999999999999999999999999999999999
Q ss_pred EEEec
Q 005712 403 KLRAR 407 (681)
Q Consensus 403 ~~~~~ 407 (681)
.++..
T Consensus 105 ~~a~~ 109 (127)
T 2a3j_A 105 TFSET 109 (127)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 88643
No 254
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.51 E-value=2.2e-14 Score=129.35 Aligned_cols=78 Identities=24% Similarity=0.349 Sum_probs=70.8
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeE--EEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVI--EVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~--~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v 224 (681)
....++|||+|||+++|+++|+++|++| .|+ .|+|++++. |+++|||||+|.+.++|++||+. ++..|.|+.|.|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEE
Confidence 3467899999999999999999999999 677 999999976 99999999999999999999985 779999999987
Q ss_pred CCC
Q 005712 225 APS 227 (681)
Q Consensus 225 ~~~ 227 (681)
..+
T Consensus 116 ~~a 118 (126)
T 2hgm_A 116 FKS 118 (126)
T ss_dssp EEE
T ss_pred EEC
Confidence 655
No 255
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.50 E-value=3.3e-14 Score=122.26 Aligned_cols=74 Identities=14% Similarity=0.311 Sum_probs=68.7
Q ss_pred cceeeeecCCCC-CCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 327 HVKTVFLDGVPP-HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 327 ~~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
..++|||+|||+ .+|+++|+++|++||.|..|.|. +|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 468999999998 99999999999999999999983 789999999999999999999999999999999987
Q ss_pred ecc
Q 005712 406 ARL 408 (681)
Q Consensus 406 ~~~ 408 (681)
...
T Consensus 81 ~~~ 83 (96)
T 2kvi_A 81 SSN 83 (96)
T ss_dssp ECC
T ss_pred CcC
Confidence 543
No 256
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.50 E-value=6.3e-14 Score=121.58 Aligned_cols=77 Identities=21% Similarity=0.383 Sum_probs=71.3
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
....++|||+|||.++|+++|+++|++||.|.+|+|+ +++|||||+|.+.++|.+|+..|++..|.|+.|.|.+
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 3457899999999999999999999999999999997 4689999999999999999999999999999999988
Q ss_pred CCC
Q 005712 227 SED 229 (681)
Q Consensus 227 ~~~ 229 (681)
+..
T Consensus 98 a~~ 100 (101)
T 2la4_A 98 GKE 100 (101)
T ss_dssp CCC
T ss_pred ccC
Confidence 754
No 257
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.2e-14 Score=127.73 Aligned_cols=77 Identities=23% Similarity=0.248 Sum_probs=69.8
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCC--CeeeccccCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKN--PVICGKRCGT 224 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g--~~l~Gr~i~v 224 (681)
..++++|||+|||+++|+++|+++|++||.|++|+|+++ +|||||+|.+.++|.+|++.|++ ..|.|++|.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 446789999999999999999999999999999999875 79999999999999999998874 6899999998
Q ss_pred CCCCC
Q 005712 225 APSED 229 (681)
Q Consensus 225 ~~~~~ 229 (681)
..+..
T Consensus 102 ~~a~~ 106 (119)
T 2ad9_A 102 QFSNH 106 (119)
T ss_dssp EECSS
T ss_pred EEccC
Confidence 77654
No 258
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.8e-14 Score=123.72 Aligned_cols=77 Identities=19% Similarity=0.191 Sum_probs=69.1
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhc--CCCeeeccccCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM--KNPVICGKRCGT 224 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l--~g~~l~Gr~i~v 224 (681)
..++++|||+|||+++|+++|+++|++||.|+.|+|+++ +|||||+|.+.++|.+|++.| ++..|.|++|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 347789999999999999999999999999999999764 899999999999999999977 467899999988
Q ss_pred CCCCC
Q 005712 225 APSED 229 (681)
Q Consensus 225 ~~~~~ 229 (681)
..+..
T Consensus 86 ~~a~~ 90 (101)
T 2cq1_A 86 QYSNH 90 (101)
T ss_dssp EECSC
T ss_pred EEcCc
Confidence 77653
No 259
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=3.9e-14 Score=124.62 Aligned_cols=75 Identities=17% Similarity=0.322 Sum_probs=69.7
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeec-----ccc
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICG-----KRC 222 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~G-----r~i 222 (681)
...++|||+|||+++|+++|+++|++||+|+.|+|+.+ |||||+|.+.++|++||+.||+..|.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 35789999999999999999999999999999999875 899999999999999999999999999 888
Q ss_pred CCCCCCC
Q 005712 223 GTAPSED 229 (681)
Q Consensus 223 ~v~~~~~ 229 (681)
.|..+..
T Consensus 86 ~V~~a~~ 92 (108)
T 1x4c_A 86 RVKVDGP 92 (108)
T ss_dssp EEEESSC
T ss_pred EEEeCCC
Confidence 8877655
No 260
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.25 E-value=1.7e-15 Score=135.17 Aligned_cols=79 Identities=27% Similarity=0.333 Sum_probs=74.8
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCC
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIR--------IVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 398 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~--------v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~ 398 (681)
..++|||+|||+.+++++|+++|++||.|.. |.|+.+..++.++|||||+|.+.++|.+||..||+..|.|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 4579999999999999999999999999998 99999988999999999999999999999999999999999
Q ss_pred eeEEEEE
Q 005712 399 NSKVKLR 405 (681)
Q Consensus 399 ~i~v~~~ 405 (681)
.|+|.++
T Consensus 86 ~l~V~~a 92 (116)
T 2lcw_A 86 PIKVSFA 92 (116)
Confidence 9888775
No 261
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=8.4e-15 Score=128.95 Aligned_cols=84 Identities=20% Similarity=0.231 Sum_probs=73.9
Q ss_pred cCCCCEEEEcCCCcc-CCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcC--CCeeeccccC
Q 005712 147 IKKEHEIFIGGLDRD-ATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMK--NPVICGKRCG 223 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~-~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~--g~~l~Gr~i~ 223 (681)
..++++|||+|||++ +|+++|+++|++||.|.+|+|++ ++|||||+|.+.++|.+|++.|+ +..|.|+.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 346889999999998 99999999999999999999964 48999999999999999999886 4569999999
Q ss_pred CCCCCCCCcceec
Q 005712 224 TAPSEDNDTLFVG 236 (681)
Q Consensus 224 v~~~~~~~~L~Vg 236 (681)
|..+.....+.++
T Consensus 96 V~~a~~~~~~~~~ 108 (112)
T 1x4f_A 96 VDLSEKYKKLVSG 108 (112)
T ss_dssp EEEECSCSSSSCC
T ss_pred EEECccccccccC
Confidence 9988877666544
No 262
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=3.9e-14 Score=126.10 Aligned_cols=74 Identities=16% Similarity=0.297 Sum_probs=68.1
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--ceecCCeeEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINN--KEFSDGNSKVKL 404 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng--~~~~g~~i~v~~ 404 (681)
..++|||+|||+.+|+++|+++|++||.|+.|.|+++ +|||||+|++.++|.+||+.|++ ..|.|+.|.|.+
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 4689999999999999999999999999999999875 79999999999999999999874 689999999988
Q ss_pred Ee
Q 005712 405 RA 406 (681)
Q Consensus 405 ~~ 406 (681)
+.
T Consensus 104 a~ 105 (119)
T 2ad9_A 104 SN 105 (119)
T ss_dssp CS
T ss_pred cc
Confidence 64
No 263
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.50 E-value=7.2e-15 Score=120.07 Aligned_cols=74 Identities=26% Similarity=0.502 Sum_probs=70.1
Q ss_pred eeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEE
Q 005712 330 TVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (681)
Q Consensus 330 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (681)
+|||+|||..+|+++|+++|++||.|..|.++.+..++.++|||||+|.+.++|.+|++ +++..|.|+.|.|.+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEE
Confidence 58999999999999999999999999999999998899999999999999999999997 588999999988875
No 264
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.50 E-value=3.9e-14 Score=128.11 Aligned_cols=81 Identities=16% Similarity=0.324 Sum_probs=72.9
Q ss_pred cCCCCEEEEcCCCccCCHHHHH----HHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeecccc
Q 005712 147 IKKEHEIFIGGLDRDATQEDVR----KVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRC 222 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~----~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i 222 (681)
..+.++|||+|||+.+++++|+ ++|++||.|++|.+.. +++++|||||+|.+.++|.+|++.||+..|.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3467899999999999999876 6999999999998853 68899999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 005712 223 GTAPSEDN 230 (681)
Q Consensus 223 ~v~~~~~~ 230 (681)
.|..+...
T Consensus 103 ~V~~a~~~ 110 (127)
T 2a3j_A 103 VITFSETP 110 (127)
T ss_dssp EEEECCCC
T ss_pred EEEEccCc
Confidence 99887654
No 265
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=7.2e-14 Score=119.04 Aligned_cols=71 Identities=25% Similarity=0.538 Sum_probs=66.4
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
..++|||+|||+.+|+++|+++|++||.|..|.|++ +||||+|.+.++|.+||..||+..|.|+.|+|.++
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 468999999999999999999999999999999974 39999999999999999999999999999888875
No 266
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.49 E-value=1.7e-14 Score=127.26 Aligned_cols=79 Identities=15% Similarity=0.183 Sum_probs=71.5
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcC-CeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIG-EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G-~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~ 225 (681)
....++|||+|||+++|+++|+++|++|| +|..|.|+.+ .++|||||+|.+.++|++||+.||+..|.|+.|.|.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 44678999999999999999999999999 8999998643 589999999999999999999999999999999887
Q ss_pred CCCC
Q 005712 226 PSED 229 (681)
Q Consensus 226 ~~~~ 229 (681)
.+..
T Consensus 101 ~a~~ 104 (111)
T 2jvr_A 101 RDDN 104 (111)
T ss_dssp ESCC
T ss_pred ECCC
Confidence 7653
No 267
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=2.9e-14 Score=125.49 Aligned_cols=76 Identities=22% Similarity=0.375 Sum_probs=68.1
Q ss_pred cceeeeecCCCCC-CCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CceecCCeeEEE
Q 005712 327 HVKTVFLDGVPPH-WKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN--NKEFSDGNSKVK 403 (681)
Q Consensus 327 ~~~~l~V~nLp~~-~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~ln--g~~~~g~~i~v~ 403 (681)
..++|||+|||++ +|+++|+++|++||.|..|.|++ ++|||||+|++.++|.+||+.|| +..|.|+.|.|.
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 97 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVD 97 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEE
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 4689999999998 99999999999999999999974 47999999999999999999886 456999999999
Q ss_pred EEecc
Q 005712 404 LRARL 408 (681)
Q Consensus 404 ~~~~~ 408 (681)
++...
T Consensus 98 ~a~~~ 102 (112)
T 1x4f_A 98 LSEKY 102 (112)
T ss_dssp EECSC
T ss_pred ECccc
Confidence 87443
No 268
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=6.1e-14 Score=118.97 Aligned_cols=76 Identities=29% Similarity=0.553 Sum_probs=70.3
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
....++|||+|||.++|+++|+++|++||.|..|+|+ ++||||+|.+.++|++|++.|++..|.|+.|.|..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3467899999999999999999999999999999996 67999999999999999999999999999999987
Q ss_pred CCCC
Q 005712 227 SEDN 230 (681)
Q Consensus 227 ~~~~ 230 (681)
+...
T Consensus 77 a~~~ 80 (90)
T 2dnq_A 77 SKNK 80 (90)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7653
No 269
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.24 E-value=2.1e-15 Score=134.61 Aligned_cols=83 Identities=25% Similarity=0.349 Sum_probs=77.9
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEE--------EEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeee
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIE--------VRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVIC 218 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~--------v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~ 218 (681)
..+.++|||+|||.++|+++|+++|++||.|.. |+|++++.+++++|||||+|.+.++|++||+.|++..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 346789999999999999999999999999999 999999899999999999999999999999999999999
Q ss_pred ccccCCCCCCC
Q 005712 219 GKRCGTAPSED 229 (681)
Q Consensus 219 Gr~i~v~~~~~ 229 (681)
|+.|.|..+..
T Consensus 84 g~~l~V~~a~~ 94 (116)
T 2lcw_A 84 GNPIKVSFATR 94 (116)
Confidence 99999887764
No 270
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=7.3e-14 Score=123.03 Aligned_cols=80 Identities=25% Similarity=0.512 Sum_probs=73.4
Q ss_pred ccCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCC
Q 005712 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (681)
Q Consensus 146 ~~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~ 225 (681)
.....++|||+|||.++|+++|+++|++||.|..|+|+.+ +|||||+|.+.++|.+||..|++..|.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3446789999999999999999999999999999999865 7999999999999999999999999999999998
Q ss_pred CCCCCC
Q 005712 226 PSEDND 231 (681)
Q Consensus 226 ~~~~~~ 231 (681)
++....
T Consensus 95 ~a~~~~ 100 (109)
T 1x4g_A 95 WGKESP 100 (109)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 877643
No 271
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=3.5e-14 Score=123.83 Aligned_cols=77 Identities=22% Similarity=0.289 Sum_probs=68.6
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCC--eeeccccCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNP--VICGKRCGT 224 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~--~l~Gr~i~v 224 (681)
..++++|||+|||+++|+++|+++|++||.|..|+|+++ +|||||+|.+.++|.+|++.|++. .|.|++|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 346789999999999999999999999999999999753 799999999999999999988654 589999988
Q ss_pred CCCCC
Q 005712 225 APSED 229 (681)
Q Consensus 225 ~~~~~ 229 (681)
..+..
T Consensus 86 ~~a~~ 90 (104)
T 1wex_A 86 NYSTS 90 (104)
T ss_dssp EECSS
T ss_pred EEccC
Confidence 77754
No 272
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=9.9e-14 Score=122.67 Aligned_cols=76 Identities=11% Similarity=0.164 Sum_probs=70.4
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEe
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (681)
..++|||+|||+.+|+++|+++|++||.|..|.|+. ++|||||+|.+.++|.+||..|||..|.|+.|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 457999999999999999999999999999999874 57899999999999999999999999999999999976
Q ss_pred cc
Q 005712 407 RL 408 (681)
Q Consensus 407 ~~ 408 (681)
..
T Consensus 83 ~~ 84 (111)
T 1whx_A 83 IG 84 (111)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 273
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.49 E-value=5e-15 Score=128.56 Aligned_cols=79 Identities=15% Similarity=0.324 Sum_probs=73.2
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~ 228 (681)
..++|||+|||+++|+++|+++|++||.|.. .++.+..+++++|||||+|.+.++|++||+ |++..|.|+.|.|..+.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 5689999999999999999999999999988 677777889999999999999999999998 99999999999988775
Q ss_pred C
Q 005712 229 D 229 (681)
Q Consensus 229 ~ 229 (681)
.
T Consensus 94 ~ 94 (101)
T 1fj7_A 94 G 94 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 274
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=5.7e-14 Score=120.91 Aligned_cols=77 Identities=16% Similarity=0.401 Sum_probs=70.5
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeee--ccccCCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVIC--GKRCGTA 225 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~--Gr~i~v~ 225 (681)
...++|||+|||.++|+++|+++|++||.|..|.|+++ +|||||+|.+.++|++|++.|++..|. |+.|.|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 46789999999999999999999999999999999753 789999999999999999999999999 9999888
Q ss_pred CCCCC
Q 005712 226 PSEDN 230 (681)
Q Consensus 226 ~~~~~ 230 (681)
.+...
T Consensus 89 ~a~~~ 93 (97)
T 1why_A 89 FAKSG 93 (97)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 77653
No 275
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.48 E-value=5.2e-14 Score=122.08 Aligned_cols=72 Identities=17% Similarity=0.374 Sum_probs=68.3
Q ss_pred eeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 329 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
++|||+|||+.+|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 72 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS 72 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEc
Confidence 47999999999999999999999999999999877 6899999999999999999999999999999888875
No 276
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=7.7e-14 Score=120.10 Aligned_cols=73 Identities=14% Similarity=0.342 Sum_probs=68.0
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec--CCeeEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS--DGNSKVKL 404 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~--g~~i~v~~ 404 (681)
..++|||+|||..+|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|++|++.||+..|. |+.|+|.+
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 3579999999999999999999999999999999754 789999999999999999999999999 99998887
Q ss_pred E
Q 005712 405 R 405 (681)
Q Consensus 405 ~ 405 (681)
+
T Consensus 90 a 90 (97)
T 1why_A 90 A 90 (97)
T ss_dssp C
T ss_pred C
Confidence 5
No 277
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.48 E-value=4.8e-14 Score=122.57 Aligned_cols=80 Identities=24% Similarity=0.390 Sum_probs=74.2
Q ss_pred ccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
...++|||+|||+.+++++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+||. ++..|+|+.|.|..+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 346899999999999999999999999999999999997 99999999999999999999997 999999999988876
Q ss_pred ecc
Q 005712 406 ARL 408 (681)
Q Consensus 406 ~~~ 408 (681)
...
T Consensus 84 ~~~ 86 (102)
T 2xs2_A 84 IRK 86 (102)
T ss_dssp EEC
T ss_pred CcC
Confidence 544
No 278
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.48 E-value=1.6e-14 Score=126.96 Aligned_cols=78 Identities=12% Similarity=0.085 Sum_probs=72.7
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCc---EEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGD---VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~---v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~ 403 (681)
..++|||+|||+.+|+++|+++|+.||. |..|.|+.+.. ++++|||||+|.+.++|.+||. ||+..|.|+.|.|.
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 4689999999999999999999999998 89999999976 9999999999999999999998 99999999998887
Q ss_pred EEe
Q 005712 404 LRA 406 (681)
Q Consensus 404 ~~~ 406 (681)
++.
T Consensus 88 ~a~ 90 (107)
T 2lmi_A 88 EIN 90 (107)
T ss_dssp ECC
T ss_pred ECC
Confidence 653
No 279
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=2.8e-14 Score=123.85 Aligned_cols=80 Identities=28% Similarity=0.447 Sum_probs=72.2
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
....++|||+|||.++|+++|+++|++||.| +|+.+ .+++++|||||+|.+.++|++||+.|++..|.|+.|.|..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3468999999999999999999999999977 56666 6899999999999999999999999999999999999877
Q ss_pred CCCC
Q 005712 227 SEDN 230 (681)
Q Consensus 227 ~~~~ 230 (681)
+...
T Consensus 88 a~~~ 91 (101)
T 2fc9_A 88 QGPR 91 (101)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 7543
No 280
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.47 E-value=3.8e-14 Score=136.13 Aligned_cols=81 Identities=17% Similarity=0.331 Sum_probs=76.5
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
...++|||+|||+++|+++|+++|++||.|+.|.|+.++ ++.++|||||+|.+.++|++||+.|++..|.|+.|.|..+
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 467899999999999999999999999999999999997 8999999999999999999999999999999999988776
Q ss_pred CC
Q 005712 228 ED 229 (681)
Q Consensus 228 ~~ 229 (681)
..
T Consensus 165 ~~ 166 (177)
T 2f3j_A 165 AS 166 (177)
T ss_dssp SS
T ss_pred cC
Confidence 54
No 281
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=8.8e-14 Score=116.49 Aligned_cols=73 Identities=21% Similarity=0.399 Sum_probs=68.3
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh-CCceecCCeeEEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI-NNKEFSDGNSKVKLR 405 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~l-ng~~~~g~~i~v~~~ 405 (681)
..++|||+|||..+++++|+++|++||.|..|.++++ +|||||+|.+.++|.+|+..| |+..|.|+.|+|.++
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 4689999999999999999999999999999999864 799999999999999999999 999999999988874
No 282
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=7.6e-14 Score=116.89 Aligned_cols=75 Identities=24% Similarity=0.452 Sum_probs=69.0
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhc-CCCeeeccccCCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM-KNPVICGKRCGTA 225 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l-~g~~l~Gr~i~v~ 225 (681)
....++|||+|||.++|+++|+++|++||.|..|+|+++ +|||||+|.+.++|.+|++.| ++..+.|+.|.|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 346789999999999999999999999999999999863 799999999999999999998 9999999999886
Q ss_pred CC
Q 005712 226 PS 227 (681)
Q Consensus 226 ~~ 227 (681)
++
T Consensus 83 ~a 84 (85)
T 2ytc_A 83 WG 84 (85)
T ss_dssp EC
T ss_pred ec
Confidence 54
No 283
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=4.1e-14 Score=122.94 Aligned_cols=82 Identities=26% Similarity=0.449 Sum_probs=74.3
Q ss_pred ccCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCC
Q 005712 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (681)
Q Consensus 146 ~~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~ 225 (681)
.....++|||+|||.++|+++|+++|++|+ .|+++.++.+++++|||||+|.+.++|++||+.|++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 345789999999999999999999999873 78888888899999999999999999999999999999999999988
Q ss_pred CCCCC
Q 005712 226 PSEDN 230 (681)
Q Consensus 226 ~~~~~ 230 (681)
.+...
T Consensus 88 ~a~~~ 92 (102)
T 2fc8_A 88 WAKPK 92 (102)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 77653
No 284
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=9.1e-14 Score=120.10 Aligned_cols=73 Identities=21% Similarity=0.469 Sum_probs=68.4
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
..++|||+|||..+|+++|+++|++||.|..|.|+++ +|||||+|.+.++|.+||+.||+..|.|+.|+|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 4579999999999999999999999999999999754 789999999999999999999999999999988875
No 285
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=6e-14 Score=120.81 Aligned_cols=77 Identities=19% Similarity=0.392 Sum_probs=70.1
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~ 228 (681)
..++|||+|||+++|+++|+++|++||.|. ++++.+ +++|||||+|.+.++|++||+.||+..|.|+.|.|..+.
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 578999999999999999999999999997 777654 789999999999999999999999999999999988776
Q ss_pred CC
Q 005712 229 DN 230 (681)
Q Consensus 229 ~~ 230 (681)
..
T Consensus 93 ~~ 94 (97)
T 2e5j_A 93 QQ 94 (97)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 286
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.47 E-value=9.9e-14 Score=123.35 Aligned_cols=78 Identities=10% Similarity=0.214 Sum_probs=72.0
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEe
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (681)
..++|||+|||+.+|+++|+++|++||.|..|.|+.+ +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 3579999999999999999999999999999999876 4569999999999999999999999999999999998865
Q ss_pred c
Q 005712 407 R 407 (681)
Q Consensus 407 ~ 407 (681)
.
T Consensus 84 ~ 84 (115)
T 3lqv_A 84 A 84 (115)
T ss_dssp H
T ss_pred C
Confidence 3
No 287
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.47 E-value=3.3e-14 Score=120.13 Aligned_cols=84 Identities=21% Similarity=0.282 Sum_probs=76.6
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
...++|||+|||+++|+++|+++|++| .|..|+|. +++|||||+|.+.++|++|++.|++..+.|+.|.|..+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 357899999999999999999999999 99999984 57999999999999999999999999999999999998
Q ss_pred CCCCcceeccc
Q 005712 228 EDNDTLFVGNI 238 (681)
Q Consensus 228 ~~~~~L~VgnL 238 (681)
.....+.+.|.
T Consensus 76 ~~~~~~~~~n~ 86 (88)
T 1wg1_A 76 PTDALLCSGPS 86 (88)
T ss_dssp CCCCCCSCCCT
T ss_pred CCCceEecCCC
Confidence 87777776653
No 288
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.4e-14 Score=128.89 Aligned_cols=83 Identities=24% Similarity=0.330 Sum_probs=71.3
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
...++|||+|||.++|+++|+++|++||.|..|.+..+..+++++|||||+|.+.++|++||+.|++..|.|+.|.|..+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 36789999999999999999999999999843333222237899999999999999999999999999999999998877
Q ss_pred CCC
Q 005712 228 EDN 230 (681)
Q Consensus 228 ~~~ 230 (681)
...
T Consensus 103 ~~~ 105 (115)
T 2cpx_A 103 KNK 105 (115)
T ss_dssp CCC
T ss_pred cCC
Confidence 643
No 289
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=3.2e-14 Score=127.90 Aligned_cols=76 Identities=11% Similarity=0.105 Sum_probs=69.6
Q ss_pred ceeeeecCCCCCCCHHHHHhhhcccCcE----EEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEE
Q 005712 328 VKTVFLDGVPPHWKENQIRDQIKGYGDV----IRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (681)
Q Consensus 328 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v----~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~ 403 (681)
..+|||+|||+++|+++|+++|++||.| ..|.|+.+ .+++++|||||+|.+.++|.+||+. |+..|.++.|.|.
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~ 100 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELF 100 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Confidence 5799999999999999999999999875 68999998 5899999999999999999999975 9999999988777
Q ss_pred EE
Q 005712 404 LR 405 (681)
Q Consensus 404 ~~ 405 (681)
.+
T Consensus 101 ~a 102 (123)
T 2dha_A 101 RS 102 (123)
T ss_dssp EE
T ss_pred EC
Confidence 65
No 290
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.46 E-value=4.7e-14 Score=124.87 Aligned_cols=77 Identities=12% Similarity=0.137 Sum_probs=70.4
Q ss_pred eeeeecCC----CCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCC----HHH----HHHHHH--HhCCce
Q 005712 329 KTVFLDGV----PPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST----HEA----AVACIN--AINNKE 394 (681)
Q Consensus 329 ~~l~V~nL----p~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~----~~~----A~~Ai~--~lng~~ 394 (681)
++|+|+|| |+.+++.+|+++|+.||.|..|.++.|+.||.++|||||+|.+ +++ |.+||. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999995 322 788888 789999
Q ss_pred ecCCeeEEEEE
Q 005712 395 FSDGNSKVKLR 405 (681)
Q Consensus 395 ~~g~~i~v~~~ 405 (681)
|.|+.|+|.+.
T Consensus 83 I~Gr~irV~ln 93 (136)
T 2j8a_A 83 IMGFKFEVILN 93 (136)
T ss_dssp ETTEEEEEEEC
T ss_pred ecCcEEEEEEC
Confidence 99999999874
No 291
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.8e-13 Score=117.00 Aligned_cols=77 Identities=18% Similarity=0.325 Sum_probs=69.1
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
....++|||+|||+++|+++|+++|++||.|..| +.++.+++ ||||+|.+.++|++||+ |++..|.|+.|.|..
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3466899999999999999999999999999987 55656665 99999999999999999 999999999999987
Q ss_pred CCC
Q 005712 227 SED 229 (681)
Q Consensus 227 ~~~ 229 (681)
+..
T Consensus 79 a~~ 81 (94)
T 2e5g_A 79 REQ 81 (94)
T ss_dssp SCC
T ss_pred CCc
Confidence 754
No 292
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.46 E-value=3.7e-14 Score=123.27 Aligned_cols=77 Identities=29% Similarity=0.541 Sum_probs=70.7
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~ 228 (681)
..++|||+|||.++|+++|+++|++||.|..|+|++++ +++++|||||+|.+.++|++||+ ++..|.|+.|.|..+.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 56899999999999999999999999999999999997 99999999999999999999998 7888888888765543
No 293
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.46 E-value=9.2e-15 Score=135.45 Aligned_cols=82 Identities=24% Similarity=0.373 Sum_probs=72.4
Q ss_pred hccCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEE--------EEeecCCCCCccceEEEEecchhHHHHHHHhcCCCe
Q 005712 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEV--------RLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPV 216 (681)
Q Consensus 145 ~~~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v--------~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~ 216 (681)
......++|||+|||+++|+++|+++|++||.|..| ++. .+++++|||||+|.+.++|.+||..||+..
T Consensus 40 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~ 116 (143)
T 3egn_A 40 EPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYV 116 (143)
T ss_dssp CCCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCE
Confidence 345578999999999999999999999999998764 332 468999999999999999999999999999
Q ss_pred eeccccCCCCCCC
Q 005712 217 ICGKRCGTAPSED 229 (681)
Q Consensus 217 l~Gr~i~v~~~~~ 229 (681)
|.|+.|.|..+..
T Consensus 117 ~~g~~l~V~~a~~ 129 (143)
T 3egn_A 117 LFGKPMVVQFARS 129 (143)
T ss_dssp ETTEECEEEECCC
T ss_pred eCCcEEEEEECCC
Confidence 9999998877653
No 294
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.4e-13 Score=116.72 Aligned_cols=71 Identities=24% Similarity=0.419 Sum_probs=66.5
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
..++|||+|||+.+|+++|+++|++||.|..|.|++ +||||+|.+.++|.+||..||+..|.|+.|+|.++
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 458999999999999999999999999999999974 39999999999999999999999999999988875
No 295
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.46 E-value=1.1e-14 Score=126.27 Aligned_cols=77 Identities=12% Similarity=0.247 Sum_probs=71.0
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
..++|||+|||+.+|+++|+++|++||.|.. .++.+..++.++|||||+|.+.++|.+||+ ||+..|.|+.|.|.++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 4689999999999999999999999999888 677777788999999999999999999998 9999999999888764
No 296
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=9.3e-14 Score=119.61 Aligned_cols=75 Identities=13% Similarity=0.325 Sum_probs=68.1
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEe
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (681)
..++|||+|||+.+|+++|+++|++||.|. +.++.+ .++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 357999999999999999999999999997 666644 578999999999999999999999999999999988753
No 297
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.46 E-value=1.8e-13 Score=117.92 Aligned_cols=72 Identities=14% Similarity=0.320 Sum_probs=67.3
Q ss_pred ccceeeeecCCCC-CCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEE
Q 005712 326 AHVKTVFLDGVPP-HWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (681)
Q Consensus 326 ~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (681)
...++|||+|||+ .+++++|+++|++||.|..|.|. +|||||+|.+.++|.+|+..|||..|.|+.|+|.+
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3468999999998 99999999999999999999983 78999999999999999999999999999999887
Q ss_pred E
Q 005712 405 R 405 (681)
Q Consensus 405 ~ 405 (681)
+
T Consensus 92 a 92 (97)
T 2xnq_A 92 S 92 (97)
T ss_dssp C
T ss_pred c
Confidence 5
No 298
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=4.4e-14 Score=125.56 Aligned_cols=74 Identities=23% Similarity=0.421 Sum_probs=64.7
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCC---CCccceEEEEecchhHHHHHHHhcCCCeeeccccCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFST---NRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~t---g~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v 224 (681)
...++|||+|||+++|+++|+++|++||+|. +.++.+..+ |+++|||||+|.+.++|++||+.|+ .+.|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4678999999999999999999999999999 888888777 7999999999999999999999883 255554443
No 299
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.3e-13 Score=118.06 Aligned_cols=72 Identities=15% Similarity=0.362 Sum_probs=64.4
Q ss_pred ceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 328 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
.++|||+|||+.+|+++|+++|++||.|..| +.+..+++ ||||+|.+.++|.+||. ||+..|.|+.|.|.++
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 4799999999999999999999999999987 55555554 99999999999999999 9999999999887643
No 300
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=2e-14 Score=127.15 Aligned_cols=75 Identities=16% Similarity=0.154 Sum_probs=69.4
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~ 228 (681)
..++|||+|||+++|+++|+++|++||.|..|.|+. ++|||||+|.+.++|++||+.||+..|.|+.|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 467999999999999999999999999999999863 57899999999999999999999999999999988765
Q ss_pred C
Q 005712 229 D 229 (681)
Q Consensus 229 ~ 229 (681)
.
T Consensus 83 ~ 83 (111)
T 1whx_A 83 I 83 (111)
T ss_dssp T
T ss_pred C
Confidence 4
No 301
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.46 E-value=5.4e-14 Score=124.51 Aligned_cols=79 Identities=15% Similarity=0.199 Sum_probs=71.0
Q ss_pred CEEEEcCC----CccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecc----h-hH---HHHHHH--hcCCCe
Q 005712 151 HEIFIGGL----DRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFAN----K-EH---AKRALT--EMKNPV 216 (681)
Q Consensus 151 ~tVfV~NL----p~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~----~-e~---A~~Al~--~l~g~~ 216 (681)
..|||+|| |+.+++.+|+++|++||+|.+|.++.|+.||+++|||||+|.+ . ++ |.+|+. .|++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999999999999999999996 3 32 888988 789999
Q ss_pred eeccccCCCCCCC
Q 005712 217 ICGKRCGTAPSED 229 (681)
Q Consensus 217 l~Gr~i~v~~~~~ 229 (681)
|.|+.|+|.....
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999998876544
No 302
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.46 E-value=5e-14 Score=121.13 Aligned_cols=82 Identities=21% Similarity=0.459 Sum_probs=74.1
Q ss_pred cCCCCEEEEcCCCccCCHHHHH----HHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeecccc
Q 005712 147 IKKEHEIFIGGLDRDATQEDVR----KVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRC 222 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~----~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i 222 (681)
..++++|||+|||.++|+++|+ ++|++||.|..|+|+. ++.++|||||+|.+.++|.+|++.|++..|.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3478899999999999999999 9999999999999974 47889999999999999999999999999999999
Q ss_pred CCCCCCCCC
Q 005712 223 GTAPSEDND 231 (681)
Q Consensus 223 ~v~~~~~~~ 231 (681)
.|..+....
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 988776543
No 303
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.45 E-value=8.7e-14 Score=119.42 Aligned_cols=74 Identities=11% Similarity=0.228 Sum_probs=67.7
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
..++|||+|||..+|+++|+++|++||.|..+ ..++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 46899999999999999999999999987666 346889999999999999999999999999999999888875
No 304
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.45 E-value=1.1e-13 Score=121.70 Aligned_cols=78 Identities=21% Similarity=0.389 Sum_probs=71.0
Q ss_pred hccCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCC
Q 005712 145 RKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (681)
Q Consensus 145 ~~~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v 224 (681)
......++|||+|||.++|+++|+++|++||.|..|+|+ +|||||+|.+.++|++|++.|++..|.|+.|.|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 344578999999999999999999999999999999997 789999999999999999999999999999999
Q ss_pred CCCCCC
Q 005712 225 APSEDN 230 (681)
Q Consensus 225 ~~~~~~ 230 (681)
..+...
T Consensus 98 ~~a~~~ 103 (108)
T 2jvo_A 98 VYSKLP 103 (108)
T ss_dssp ESCSCC
T ss_pred EEecCC
Confidence 877653
No 305
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.45 E-value=8e-14 Score=133.86 Aligned_cols=82 Identities=7% Similarity=0.162 Sum_probs=77.2
Q ss_pred ccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
...++|||+|||+.+++++|+++|++||.|+.|.|+.+. ++.++|||||+|.+.++|.+||+.||+..|.|+.|+|.++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 456899999999999999999999999999999999997 8999999999999999999999999999999999999987
Q ss_pred ecc
Q 005712 406 ARL 408 (681)
Q Consensus 406 ~~~ 408 (681)
...
T Consensus 165 ~~~ 167 (177)
T 2f3j_A 165 ASQ 167 (177)
T ss_dssp SSG
T ss_pred cCC
Confidence 544
No 306
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.45 E-value=6.8e-14 Score=120.31 Aligned_cols=78 Identities=14% Similarity=0.390 Sum_probs=71.5
Q ss_pred cceeeeecCCCCCCCHHHHH----hhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEE
Q 005712 327 HVKTVFLDGVPPHWKENQIR----DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 402 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~----~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v 402 (681)
..++|||+|||..+++++|+ ++|++||.|..|.|+. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 45899999999999999999 9999999999999874 4778999999999999999999999999999999988
Q ss_pred EEEec
Q 005712 403 KLRAR 407 (681)
Q Consensus 403 ~~~~~ 407 (681)
.++..
T Consensus 84 ~~a~~ 88 (97)
T 1nu4_A 84 QYAKT 88 (97)
T ss_dssp EECSS
T ss_pred EEccC
Confidence 87543
No 307
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=8.9e-14 Score=122.49 Aligned_cols=77 Identities=17% Similarity=0.260 Sum_probs=67.0
Q ss_pred ceeeee--cCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee-----cCCee
Q 005712 328 VKTVFL--DGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF-----SDGNS 400 (681)
Q Consensus 328 ~~~l~V--~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~-----~g~~i 400 (681)
+++||| +||++.+|+++|+++|++||.|..|.|+. .||||||+|++.++|++|++.|||+.| .++.|
T Consensus 25 t~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l 98 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 98 (114)
T ss_dssp CSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEE
Confidence 578999 67999999999999999999999998864 379999999999999999999999998 57777
Q ss_pred EEEEEeccCC
Q 005712 401 KVKLRARLSN 410 (681)
Q Consensus 401 ~v~~~~~~~~ 410 (681)
.|.+......
T Consensus 99 ~v~~a~~~p~ 108 (114)
T 2cq2_A 99 YLNFVEKVQW 108 (114)
T ss_dssp EEEEESCCCC
T ss_pred EEEecccCcc
Confidence 7777654433
No 308
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.45 E-value=1.6e-13 Score=118.23 Aligned_cols=78 Identities=21% Similarity=0.466 Sum_probs=69.7
Q ss_pred hhccCCCCEEEEcCCCc-cCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeecccc
Q 005712 144 DRKIKKEHEIFIGGLDR-DATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRC 222 (681)
Q Consensus 144 ~~~~~~~~tVfV~NLp~-~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i 222 (681)
.......++|||+|||. ++|+++|+++|++||.|..|+|. +|||||+|.+.++|.+|++.|++..+.|+.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34455789999999998 99999999999999999999983 7899999999999999999999999999999
Q ss_pred CCCCCCC
Q 005712 223 GTAPSED 229 (681)
Q Consensus 223 ~v~~~~~ 229 (681)
.|..+..
T Consensus 88 ~V~~a~~ 94 (97)
T 2xnq_A 88 ILEVSSS 94 (97)
T ss_dssp EEEECCC
T ss_pred EEEecCC
Confidence 8877654
No 309
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.45 E-value=8e-14 Score=125.63 Aligned_cols=76 Identities=18% Similarity=0.266 Sum_probs=69.1
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEE--EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVI--RIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~--~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (681)
..++|||+|||+.+|+++|+++|++| .|+ .|.|++++. |+++|||||+|.+.++|++||+ +++..|.|+.|.|..
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 35789999999999999999999999 566 899999976 9999999999999999999997 577999999988876
Q ss_pred E
Q 005712 405 R 405 (681)
Q Consensus 405 ~ 405 (681)
.
T Consensus 118 a 118 (126)
T 2hgm_A 118 S 118 (126)
T ss_dssp E
T ss_pred C
Confidence 5
No 310
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.45 E-value=8.9e-14 Score=119.50 Aligned_cols=75 Identities=21% Similarity=0.480 Sum_probs=68.1
Q ss_pred cCCCCEEEEcCCCc-cCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCC
Q 005712 147 IKKEHEIFIGGLDR-DATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (681)
Q Consensus 147 ~~~~~tVfV~NLp~-~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~ 225 (681)
..+.++|||+|||+ ++|+++|+++|++||.|..|+|. +|||||+|.+.++|.+||+.|++..+.|+.|.|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45788999999998 99999999999999999999993 7899999999999999999999999999999887
Q ss_pred CCCC
Q 005712 226 PSED 229 (681)
Q Consensus 226 ~~~~ 229 (681)
.+..
T Consensus 79 ~a~~ 82 (96)
T 2kvi_A 79 VSSS 82 (96)
T ss_dssp EEEC
T ss_pred EcCc
Confidence 6643
No 311
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=1.2e-13 Score=117.23 Aligned_cols=76 Identities=32% Similarity=0.546 Sum_probs=69.8
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
....++|||+|||.++|+++|+++|++||.|..|+|++ +||||+|.+.++|++||+.|++..|.|+.|.|..
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45778999999999999999999999999999999973 3999999999999999999999999999999887
Q ss_pred CCCC
Q 005712 227 SEDN 230 (681)
Q Consensus 227 ~~~~ 230 (681)
+...
T Consensus 78 a~~~ 81 (90)
T 2dnp_A 78 STKG 81 (90)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7653
No 312
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=8e-14 Score=118.95 Aligned_cols=72 Identities=15% Similarity=0.342 Sum_probs=64.9
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCc-EEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC-ceecCCeeEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGD-VIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINN-KEFSDGNSKVKL 404 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~-v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng-~~~~g~~i~v~~ 404 (681)
..++|||+|||+.+|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+||..||+ ..|.|+.|+|.+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 4579999999999999999999999999 5555552 589999999999999999999999 999999998887
Q ss_pred E
Q 005712 405 R 405 (681)
Q Consensus 405 ~ 405 (681)
+
T Consensus 80 a 80 (93)
T 2cqh_A 80 S 80 (93)
T ss_dssp C
T ss_pred c
Confidence 5
No 313
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.45 E-value=1.1e-13 Score=121.70 Aligned_cols=73 Identities=16% Similarity=0.389 Sum_probs=67.8
Q ss_pred cccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEE
Q 005712 325 MAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKL 404 (681)
Q Consensus 325 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~ 404 (681)
....++|||+|||..+|+++|+++|++||.|..|.|+ +|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3456899999999999999999999999999999997 78999999999999999999999999999988876
Q ss_pred E
Q 005712 405 R 405 (681)
Q Consensus 405 ~ 405 (681)
+
T Consensus 100 a 100 (108)
T 2jvo_A 100 S 100 (108)
T ss_dssp C
T ss_pred e
Confidence 4
No 314
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=1.1e-13 Score=117.85 Aligned_cols=77 Identities=30% Similarity=0.464 Sum_probs=70.3
Q ss_pred ccCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCC
Q 005712 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (681)
Q Consensus 146 ~~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~ 225 (681)
.....++|||+|||.++|+++|+++|++||.|..|+|++ +||||+|.+.++|.+|++.|++..|.|+.|.|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 345778999999999999999999999999999999963 399999999999999999999999999999988
Q ss_pred CCCCC
Q 005712 226 PSEDN 230 (681)
Q Consensus 226 ~~~~~ 230 (681)
.+...
T Consensus 78 ~a~~~ 82 (92)
T 2dgt_A 78 LSTSR 82 (92)
T ss_dssp ESSCC
T ss_pred EccCC
Confidence 77654
No 315
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.44 E-value=1.1e-13 Score=151.56 Aligned_cols=82 Identities=18% Similarity=0.393 Sum_probs=77.6
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
...++|||+|||+.||+++|.++|++||.|+.|.|+.++.+++++|||||+|.+.++|.+||+.||+..|.|+.|.|..+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 35589999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CC
Q 005712 228 ED 229 (681)
Q Consensus 228 ~~ 229 (681)
..
T Consensus 180 ~~ 181 (437)
T 3pgw_S 180 RG 181 (437)
T ss_pred CC
Confidence 64
No 316
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.44 E-value=1.3e-13 Score=120.03 Aligned_cols=74 Identities=26% Similarity=0.442 Sum_probs=68.4
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
...++|||+|||.++|+++|+++|++||.|..|+|+ ++||||+|.+.++|++||+.|++..|.|+.|.|..+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 467899999999999999999999999999999986 459999999999999999999999999999988776
Q ss_pred CC
Q 005712 228 ED 229 (681)
Q Consensus 228 ~~ 229 (681)
..
T Consensus 81 ~~ 82 (103)
T 2dgu_A 81 KP 82 (103)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 317
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.44 E-value=4.4e-13 Score=117.05 Aligned_cols=80 Identities=19% Similarity=0.240 Sum_probs=70.8
Q ss_pred cceeeeecCCCC-----CCCHHHHHhhhcccCcEEEEEEeecCCC-CCcceEEEEEeCCHHHHHHHHHHhCCceecCCee
Q 005712 327 HVKTVFLDGVPP-----HWKENQIRDQIKGYGDVIRIVLARNMST-AKRKDYGFIDFSTHEAAVACINAINNKEFSDGNS 400 (681)
Q Consensus 327 ~~~~l~V~nLp~-----~~t~~~L~~~F~~~G~v~~v~i~~d~~~-g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i 400 (681)
.+++|+|+||.. +.++++|+++|++||.|..|.|++++.+ +.++|||||+|.+.++|.+|+..|||+.|.|+.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 467999999963 2478999999999999999999998654 6899999999999999999999999999999999
Q ss_pred EEEEEe
Q 005712 401 KVKLRA 406 (681)
Q Consensus 401 ~v~~~~ 406 (681)
.|.+..
T Consensus 87 ~v~~a~ 92 (105)
T 2pe8_A 87 KACFYN 92 (105)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 998753
No 318
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.43 E-value=8.5e-14 Score=120.72 Aligned_cols=72 Identities=25% Similarity=0.427 Sum_probs=67.2
Q ss_pred ceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 328 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
.++|||+|||..+++++|+++|++||.|..|.|+ +++|||||+|.+.++|.+||..||+..|.|+.|+|.++
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 5799999999999999999999999999999997 35899999999999999999999999999999887764
No 319
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.43 E-value=1.2e-13 Score=122.88 Aligned_cols=69 Identities=20% Similarity=0.377 Sum_probs=63.4
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v 224 (681)
..++|||+|||+++|+++|+++|++||+|+.|.|+.+ |||||+|.+.++|++||+.||+..|.|+.|.+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~ 83 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGET 83 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeee
Confidence 5689999999999999999999999999999999765 89999999999999999999999999998544
No 320
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=2.7e-13 Score=117.16 Aligned_cols=75 Identities=25% Similarity=0.418 Sum_probs=69.0
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhc--CCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERI--GEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~--G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~ 225 (681)
...++|||+|||.++|+++|+++|++| |.|..|+++ +|||||+|.+.++|++||+.|++..|.|+.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 367899999999999999999999999 999999874 5799999999999999999999999999999998
Q ss_pred CCCCC
Q 005712 226 PSEDN 230 (681)
Q Consensus 226 ~~~~~ 230 (681)
.+...
T Consensus 85 ~a~~~ 89 (99)
T 2cpd_A 85 LAKPV 89 (99)
T ss_dssp CCCCC
T ss_pred ECCCC
Confidence 77654
No 321
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.42 E-value=3e-13 Score=114.22 Aligned_cols=71 Identities=18% Similarity=0.340 Sum_probs=66.8
Q ss_pred ceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 328 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
.++|||+|||+.+++++|+++|++| .|..|.|. +++|||||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 5799999999999999999999999 99999884 57999999999999999999999999999999988875
No 322
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.42 E-value=4.4e-14 Score=121.28 Aligned_cols=77 Identities=21% Similarity=0.384 Sum_probs=69.5
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
...++|||+|||.++|+++|+++|++||.|..+ ..+++++|||||+|.+.++|.+||+.|++..|.|+.|.|..+
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 356899999999999999999999999987666 356899999999999999999999999999999999988776
Q ss_pred CC
Q 005712 228 ED 229 (681)
Q Consensus 228 ~~ 229 (681)
..
T Consensus 89 ~~ 90 (96)
T 1fjc_A 89 GE 90 (96)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 323
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=7.2e-13 Score=113.98 Aligned_cols=71 Identities=15% Similarity=0.379 Sum_probs=65.2
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
..++|||+|| .+|+++|+++|++||.|..|.|. .++|||||+|.+.++|.+||..||+..|.|+.|+|.++
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 4579999996 89999999999999999999984 46899999999999999999999999999999888765
No 324
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.42 E-value=4.4e-13 Score=126.87 Aligned_cols=79 Identities=15% Similarity=0.309 Sum_probs=75.4
Q ss_pred ceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEe
Q 005712 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 328 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (681)
.++|||+|||..+|+++|+++|++||.|..|.|+++..++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.+..
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 5799999999999999999999999999999999998899999999999999999999999999999999999888754
No 325
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.42 E-value=5e-13 Score=126.13 Aligned_cols=79 Identities=19% Similarity=0.364 Sum_probs=75.2
Q ss_pred ceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEe
Q 005712 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 328 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (681)
.++|||+|||..+|+++|+++|++||.|..|.++++..++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.+..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 4799999999999999999999999999999999998899999999999999999999999999999999999887753
No 326
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.41 E-value=2.7e-13 Score=119.50 Aligned_cols=73 Identities=29% Similarity=0.583 Sum_probs=68.3
Q ss_pred CCCEEEEcCCCcc-CCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 149 KEHEIFIGGLDRD-ATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 149 ~~~tVfV~NLp~~-~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
..++|||+|||++ +|+++|+++|++||.|..|+| ++|||||+|.+.++|++||+.|++..|.|+.|.|..+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4589999999999 999999999999999999998 4789999999999999999999999999999998877
Q ss_pred CC
Q 005712 228 ED 229 (681)
Q Consensus 228 ~~ 229 (681)
..
T Consensus 98 ~~ 99 (110)
T 1wf1_A 98 GE 99 (110)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 327
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=4.7e-13 Score=112.08 Aligned_cols=79 Identities=23% Similarity=0.379 Sum_probs=69.4
Q ss_pred CCCCE-EEEcCCCccCCHHH----HHHHHhhc-CCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccc
Q 005712 148 KKEHE-IFIGGLDRDATQED----VRKVFERI-GEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKR 221 (681)
Q Consensus 148 ~~~~t-VfV~NLp~~~teed----L~~~F~~~-G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~ 221 (681)
.++.| |||+|||+.+++++ |+++|++| |+|.+| |+ |+|||.|.+.++|++|++.|++..|.||+
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 34566 99999999999988 55899999 599988 33 99999999999999999999999999999
Q ss_pred cCCCCCCCCCcceec
Q 005712 222 CGTAPSEDNDTLFVG 236 (681)
Q Consensus 222 i~v~~~~~~~~L~Vg 236 (681)
|+|..+...+.++..
T Consensus 76 i~v~~A~~~sd~~~~ 90 (96)
T 2diu_A 76 IIVSFTPKNRELCET 90 (96)
T ss_dssp CEEESSCCSCCCCCC
T ss_pred EEEEecCCCcceeEe
Confidence 999999887776643
No 328
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=3.2e-13 Score=115.84 Aligned_cols=77 Identities=17% Similarity=0.290 Sum_probs=69.0
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEE-EEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRI-VLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v-~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
..++|||+|||+.+|+++|+++|++||.|..| .|+.+..++ .|||+|.+.++|.+||..|||..|.|+.|.|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35799999999999999999999999999999 588776443 3999999999999999999999999999999876
Q ss_pred ec
Q 005712 406 AR 407 (681)
Q Consensus 406 ~~ 407 (681)
..
T Consensus 90 ~~ 91 (96)
T 2e44_A 90 PD 91 (96)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 329
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.41 E-value=1.1e-12 Score=127.68 Aligned_cols=123 Identities=14% Similarity=0.251 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHhCCCCeeeCCCCccceecccCCCCCCCh--hhcccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEe
Q 005712 284 CHVDAMAAYKRLQKPDVVFGHPERTVKVAFAEPLREPDP--EIMAHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLA 361 (681)
Q Consensus 284 s~e~A~~Al~~l~g~~~~~g~~gr~l~v~~a~~~~~~~~--~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 361 (681)
+.+....|++......+.+...+..++.....+...... ......++|||+|||+.+|+++|+++|++||.|..|.|+
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 456677777655333443333333333221112111110 122346899999999999999999999999999999999
Q ss_pred ecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEecc
Q 005712 362 RNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRARL 408 (681)
Q Consensus 362 ~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~~~ 408 (681)
++. ++.++|||||+|++.++|.+||..++ ..|.|+.|.|.++..+
T Consensus 143 ~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 143 RTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDDY 187 (193)
T ss_dssp ECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTTC
T ss_pred ECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHHH
Confidence 985 58999999999999999999997665 5999999999876544
No 330
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=2e-13 Score=117.16 Aligned_cols=78 Identities=15% Similarity=0.178 Sum_probs=70.0
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEE-EeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVR-LHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~-i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
..++|||+|||+++|+++|+++|++||.|..|+ |+.++.++. |||+|.+.++|.+||+.|++..|.|+.|.|..+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 568999999999999999999999999999995 887755443 999999999999999999999999999998776
Q ss_pred CCC
Q 005712 228 EDN 230 (681)
Q Consensus 228 ~~~ 230 (681)
.+.
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 643
No 331
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.40 E-value=7.3e-14 Score=129.36 Aligned_cols=81 Identities=16% Similarity=0.230 Sum_probs=69.5
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEE--E---eecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIV--L---ARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSK 401 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~--i---~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~ 401 (681)
..++|||+|||+.+|+++|+++|++||.|..+. + +....++.++|||||+|.+.++|.+||..|||..|.|+.|.
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 123 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 123 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 457999999999999999999999999887641 1 11124688999999999999999999999999999999999
Q ss_pred EEEEec
Q 005712 402 VKLRAR 407 (681)
Q Consensus 402 v~~~~~ 407 (681)
|.++..
T Consensus 124 V~~a~~ 129 (143)
T 3egn_A 124 VQFARS 129 (143)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 987643
No 332
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=1.7e-13 Score=116.83 Aligned_cols=76 Identities=25% Similarity=0.395 Sum_probs=67.7
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCC-eEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCC-CeeeccccCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGE-VIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKN-PVICGKRCGT 224 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~-V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g-~~l~Gr~i~v 224 (681)
....++|||+|||.++|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+||+.||+ ..|.|+.|.|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 346789999999999999999999999999 6666552 489999999999999999999999 9999999998
Q ss_pred CCCCC
Q 005712 225 APSED 229 (681)
Q Consensus 225 ~~~~~ 229 (681)
..+..
T Consensus 78 ~~a~~ 82 (93)
T 2cqh_A 78 DYSVS 82 (93)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 77764
No 333
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.39 E-value=4.2e-13 Score=112.78 Aligned_cols=70 Identities=19% Similarity=0.470 Sum_probs=65.1
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhc----C-------CeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCee
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERI----G-------EVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI 217 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~----G-------~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l 217 (681)
..++|||+|||+++|+++|+++|++| | .|.+|++.++ +|||||+|.+.++|.+|+ .|++..|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 56899999999999999999999999 8 9999999654 899999999999999999 9999999
Q ss_pred eccccCCC
Q 005712 218 CGKRCGTA 225 (681)
Q Consensus 218 ~Gr~i~v~ 225 (681)
.|+.|.|.
T Consensus 78 ~g~~l~V~ 85 (87)
T 2hzc_A 78 QGQSLKIR 85 (87)
T ss_dssp TTEECEEE
T ss_pred CCeEEEEe
Confidence 99998765
No 334
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.39 E-value=6.4e-13 Score=131.23 Aligned_cols=82 Identities=20% Similarity=0.471 Sum_probs=77.8
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
...++|||+|||.++|+++|+++|++||.|+.|+|++++.+++++|||||+|.+.++|.+||+.|++..|.|+.|.|..+
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 46789999999999999999999999999999999999889999999999999999999999999999999999998776
Q ss_pred CC
Q 005712 228 ED 229 (681)
Q Consensus 228 ~~ 229 (681)
..
T Consensus 203 ~~ 204 (216)
T 2qfj_A 203 VT 204 (216)
T ss_dssp SS
T ss_pred cC
Confidence 54
No 335
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.39 E-value=1e-12 Score=122.87 Aligned_cols=76 Identities=7% Similarity=0.186 Sum_probs=68.2
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC--CeeEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD--GNSKVKL 404 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g--~~i~v~~ 404 (681)
...+|||+||++.+|+++|+++|++||.|..|.|+.+ .++|||||+|.+.++|.+|++.|||..|.| +.|+|++
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 3568999999999999999999999999999999754 258999999999999999999999999966 8888887
Q ss_pred Ee
Q 005712 405 RA 406 (681)
Q Consensus 405 ~~ 406 (681)
+.
T Consensus 121 Ak 122 (164)
T 1sjr_A 121 SK 122 (164)
T ss_dssp CS
T ss_pred ec
Confidence 54
No 336
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=5.2e-13 Score=118.58 Aligned_cols=74 Identities=22% Similarity=0.381 Sum_probs=64.9
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCC---CCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMST---AKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~---g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~ 403 (681)
..++|||+|||+.+|+++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|++||+.|+ .++|+.+.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 358999999999999999999999999999 888888777 7999999999999999999999994 3666655443
No 337
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.38 E-value=6.9e-13 Score=111.43 Aligned_cols=70 Identities=16% Similarity=0.447 Sum_probs=65.3
Q ss_pred cceeeeecCCCCCCCHHHHHhhhccc----C-------cEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGY----G-------DVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 395 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~----G-------~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~ 395 (681)
..++|||+|||+.+|+++|+++|++| | .|..+.+.++ +|||||+|.+.++|.+|+ .||+..|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 46899999999999999999999999 8 8999999754 799999999999999999 9999999
Q ss_pred cCCeeEEE
Q 005712 396 SDGNSKVK 403 (681)
Q Consensus 396 ~g~~i~v~ 403 (681)
.|+.|+|+
T Consensus 78 ~g~~l~V~ 85 (87)
T 2hzc_A 78 QGQSLKIR 85 (87)
T ss_dssp TTEECEEE
T ss_pred CCeEEEEe
Confidence 99998875
No 338
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.38 E-value=1.9e-12 Score=116.73 Aligned_cols=73 Identities=7% Similarity=0.249 Sum_probs=65.0
Q ss_pred ceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceE-EEEEeCCHHHHHHHHHHhCCceecC--CeeEEEE
Q 005712 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDY-GFIDFSTHEAAVACINAINNKEFSD--GNSKVKL 404 (681)
Q Consensus 328 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~-aFV~F~~~~~A~~Ai~~lng~~~~g--~~i~v~~ 404 (681)
...|+|+||++.+|+++|+++|++||.|..|.|+.. ++|| |||+|.+.++|.+|++.|||..|.| +.|+|++
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 467889999999999999999999999999998764 3688 9999999999999999999999999 5555555
Q ss_pred E
Q 005712 405 R 405 (681)
Q Consensus 405 ~ 405 (681)
+
T Consensus 103 a 103 (130)
T 3zzy_A 103 S 103 (130)
T ss_dssp C
T ss_pred c
Confidence 4
No 339
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=1e-12 Score=113.06 Aligned_cols=76 Identities=20% Similarity=0.378 Sum_probs=69.0
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCC
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAP 226 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~ 226 (681)
....++|||+|| ++|+++|+++|++||+|..|+|. +++|||||+|.+.++|.+||..|++..|.|+.|.|..
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 346789999996 99999999999999999999994 5789999999999999999999999999999999887
Q ss_pred CCCC
Q 005712 227 SEDN 230 (681)
Q Consensus 227 ~~~~ 230 (681)
+...
T Consensus 84 a~~~ 87 (97)
T 1x5p_A 84 ARKQ 87 (97)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7653
No 340
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.37 E-value=1.1e-12 Score=114.43 Aligned_cols=82 Identities=11% Similarity=0.176 Sum_probs=72.3
Q ss_pred cCCCCEEEEcCCCc-----cCCHHHHHHHHhhcCCeEEEEEeecCCC-CCccceEEEEecchhHHHHHHHhcCCCeeecc
Q 005712 147 IKKEHEIFIGGLDR-----DATQEDVRKVFERIGEVIEVRLHKNFST-NRNKGYAFVKFANKEHAKRALTEMKNPVICGK 220 (681)
Q Consensus 147 ~~~~~tVfV~NLp~-----~~teedL~~~F~~~G~V~~v~i~~d~~t-g~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr 220 (681)
..++++|+|+||.. +.++++|+++|++||.|.+|+|++++.+ ++++|+|||+|.+.++|.+|++.||+..+.|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34789999999973 3478999999999999999999998654 68999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 005712 221 RCGTAPSE 228 (681)
Q Consensus 221 ~i~v~~~~ 228 (681)
.|.|..+.
T Consensus 85 ~i~v~~a~ 92 (105)
T 2pe8_A 85 VVKACFYN 92 (105)
T ss_dssp ECEEEECC
T ss_pred EEEEEEcC
Confidence 99877654
No 341
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.37 E-value=9.1e-13 Score=128.27 Aligned_cols=83 Identities=22% Similarity=0.416 Sum_probs=78.3
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
...++|||+|||..+|+++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|++.|++..|.|+.|.|..+
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 46789999999999999999999999999999999999889999999999999999999999999999999999998877
Q ss_pred CCC
Q 005712 228 EDN 230 (681)
Q Consensus 228 ~~~ 230 (681)
.+.
T Consensus 192 ~~~ 194 (198)
T 2yh0_A 192 SVG 194 (198)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 342
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.37 E-value=1.2e-12 Score=127.23 Aligned_cols=81 Identities=19% Similarity=0.412 Sum_probs=74.9
Q ss_pred ccceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 326 AHVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 326 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
...++|||+|||+.+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||.. ++..|.|+.|.|.+.
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 3468999999999999999999999999999999999999999999999999999999999965 999999999988875
Q ss_pred ec
Q 005712 406 AR 407 (681)
Q Consensus 406 ~~ 407 (681)
..
T Consensus 90 ~~ 91 (196)
T 1l3k_A 90 VS 91 (196)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 343
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.37 E-value=2.8e-12 Score=115.05 Aligned_cols=73 Identities=16% Similarity=0.215 Sum_probs=63.8
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceE-EEEEeCCHHHHHHHHHHhCCceecCC--eeEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDY-GFIDFSTHEAAVACINAINNKEFSDG--NSKVK 403 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~-aFV~F~~~~~A~~Ai~~lng~~~~g~--~i~v~ 403 (681)
....|||+||++.+|+++|+++|++||.|..|.|+.. .|| |||+|.+.++|.+|+++|||..|.|+ .|+|.
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEE
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEE
Confidence 3456789999999999999999999999999999652 286 99999999999999999999999984 66665
Q ss_pred EE
Q 005712 404 LR 405 (681)
Q Consensus 404 ~~ 405 (681)
++
T Consensus 98 ~A 99 (124)
T 2e5i_A 98 YA 99 (124)
T ss_dssp CC
T ss_pred Ee
Confidence 54
No 344
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=5.2e-13 Score=117.59 Aligned_cols=73 Identities=21% Similarity=0.346 Sum_probs=63.6
Q ss_pred cCCCCEEEE--cCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCee-----ec
Q 005712 147 IKKEHEIFI--GGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI-----CG 219 (681)
Q Consensus 147 ~~~~~tVfV--~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l-----~G 219 (681)
..++++||| +||++++|+++|+++|++||+|..|.|+. .+|||||+|.+.++|++|++.||+..| .+
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 346789999 77999999999999999999999998863 379999999999999999999999988 46
Q ss_pred cccCCC
Q 005712 220 KRCGTA 225 (681)
Q Consensus 220 r~i~v~ 225 (681)
++|.|.
T Consensus 96 ~~l~v~ 101 (114)
T 2cq2_A 96 ITLYLN 101 (114)
T ss_dssp EECEEE
T ss_pred cEEEEE
Confidence 655443
No 345
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.37 E-value=1.2e-12 Score=110.67 Aligned_cols=69 Identities=13% Similarity=0.367 Sum_probs=58.6
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec--CCeeEEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS--DGNSKVKL 404 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~--g~~i~v~~ 404 (681)
..++|||+|||+++|+++|+++|++||.|..|.|+++ ++|||||+|++.++|. +|++..+. |+.|.|.+
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~----~~~~~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQ----SLCGEDLIIKGISVHISN 80 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHH----HHTTCEEEETTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHH----HHcCCCcccCCEEEEEEE
Confidence 4689999999999999999999999999999999875 7999999999999987 35676665 55555544
No 346
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.35 E-value=8e-13 Score=111.86 Aligned_cols=75 Identities=27% Similarity=0.433 Sum_probs=60.1
Q ss_pred ccCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCe--eeccccC
Q 005712 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPV--ICGKRCG 223 (681)
Q Consensus 146 ~~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~--l~Gr~i~ 223 (681)
......+|||+|||+++|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|+++ ++.. +.|+.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~----~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSL----CGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHH----TTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHH----cCCCcccCCEEEE
Confidence 3447889999999999999999999999999999999874 799999999999999843 3444 4477777
Q ss_pred CCCCCC
Q 005712 224 TAPSED 229 (681)
Q Consensus 224 v~~~~~ 229 (681)
|..+.+
T Consensus 78 v~~a~~ 83 (89)
T 3d2w_A 78 ISNAEP 83 (89)
T ss_dssp EEECC-
T ss_pred EEEcCC
Confidence 766543
No 347
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.35 E-value=1.2e-12 Score=122.35 Aligned_cols=77 Identities=17% Similarity=0.197 Sum_probs=69.1
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeec--cccCCCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICG--KRCGTAP 226 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~G--r~i~v~~ 226 (681)
...+|||+||++.+|+++|+++|++||+|+.|+|+.. .++|||||+|.+.++|.+|++.|++..|.+ +.|+|..
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 4467899999999999999999999999999999754 368999999999999999999999999976 8888877
Q ss_pred CCC
Q 005712 227 SED 229 (681)
Q Consensus 227 ~~~ 229 (681)
+..
T Consensus 121 Ak~ 123 (164)
T 1sjr_A 121 SKL 123 (164)
T ss_dssp CSS
T ss_pred ecC
Confidence 764
No 348
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=1.8e-12 Score=108.56 Aligned_cols=72 Identities=14% Similarity=0.266 Sum_probs=62.9
Q ss_pred eeeeecCCCCCCCHHH----HHhhhccc-CcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEE
Q 005712 329 KTVFLDGVPPHWKENQ----IRDQIKGY-GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVK 403 (681)
Q Consensus 329 ~~l~V~nLp~~~t~~~----L~~~F~~~-G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~ 403 (681)
+.|||+|||+.+++++ |+++|++| |.|..| ++ |+|||+|.+.++|.+|++.|||..|.||.|+|.
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~ 79 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVS 79 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEE
Confidence 3499999999999987 55899999 599988 23 999999999999999999999999999999998
Q ss_pred EEeccCC
Q 005712 404 LRARLSN 410 (681)
Q Consensus 404 ~~~~~~~ 410 (681)
++...+.
T Consensus 80 ~A~~~sd 86 (96)
T 2diu_A 80 FTPKNRE 86 (96)
T ss_dssp SSCCSCC
T ss_pred ecCCCcc
Confidence 7655433
No 349
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.33 E-value=1.7e-12 Score=126.46 Aligned_cols=79 Identities=24% Similarity=0.383 Sum_probs=71.2
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPSE 228 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~~ 228 (681)
..++|||+|||+++|+++|+++|++||.|..|+|+++. +++++|||||+|.+.++|.+||+.++ ..+.|+.|.|.+..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhH
Confidence 34799999999999999999999999999999999985 58999999999999999999998654 58999999887665
Q ss_pred C
Q 005712 229 D 229 (681)
Q Consensus 229 ~ 229 (681)
+
T Consensus 186 ~ 186 (193)
T 2voo_A 186 D 186 (193)
T ss_dssp T
T ss_pred H
Confidence 4
No 350
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.33 E-value=2.5e-12 Score=115.93 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=68.5
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccce-EEEEecchhHHHHHHHhcCCCeeec--cccCCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGY-AFVKFANKEHAKRALTEMKNPVICG--KRCGTA 225 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~-aFVeF~~~e~A~~Al~~l~g~~l~G--r~i~v~ 225 (681)
.-.+|||+||++.+|+++|+++|++||.|.+|+|+.. ++|| |||+|.+.++|++|++.||+..|.| +.|+|.
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 4457889999999999999999999999999999764 3677 9999999999999999999999998 788887
Q ss_pred CCCCC
Q 005712 226 PSEDN 230 (681)
Q Consensus 226 ~~~~~ 230 (681)
.+...
T Consensus 102 ~ak~~ 106 (130)
T 3zzy_A 102 FSKLT 106 (130)
T ss_dssp ECSCS
T ss_pred ecCCC
Confidence 77643
No 351
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.33 E-value=2.9e-12 Score=111.90 Aligned_cols=79 Identities=15% Similarity=0.232 Sum_probs=68.7
Q ss_pred cceeeeecCCC--CCC--------CHHHHHhhhcccCcEEEEEEeecCCC--CCcceEEEEEeCCHHHHHHHHHHhCCce
Q 005712 327 HVKTVFLDGVP--PHW--------KENQIRDQIKGYGDVIRIVLARNMST--AKRKDYGFIDFSTHEAAVACINAINNKE 394 (681)
Q Consensus 327 ~~~~l~V~nLp--~~~--------t~~~L~~~F~~~G~v~~v~i~~d~~~--g~~rG~aFV~F~~~~~A~~Ai~~lng~~ 394 (681)
++++|.|.|+- ..+ +.++|+++|++||.|..|.|+++..+ +.++|||||+|.+.++|.+|+.+|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 35788999983 333 33799999999999999999998754 4689999999999999999999999999
Q ss_pred ecCCeeEEEEE
Q 005712 395 FSDGNSKVKLR 405 (681)
Q Consensus 395 ~~g~~i~v~~~ 405 (681)
|.||.|.|.+.
T Consensus 84 f~GR~i~v~~~ 94 (105)
T 3v4m_A 84 FANRVVVTKYC 94 (105)
T ss_dssp ETTEECEEEEE
T ss_pred eCCCEEEEEEe
Confidence 99999999875
No 352
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=6.9e-13 Score=111.89 Aligned_cols=75 Identities=27% Similarity=0.489 Sum_probs=63.5
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCCCC
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTAPS 227 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~~~ 227 (681)
...++|||+|||.++|+++|+++|++||.|..|+|+++ ++|||||+|.+.++|++|+.. ...+.++.|.|..+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 35789999999999999999999999999999999764 789999999999999876532 34557888877766
Q ss_pred CC
Q 005712 228 ED 229 (681)
Q Consensus 228 ~~ 229 (681)
..
T Consensus 76 ~~ 77 (88)
T 1wf0_A 76 EP 77 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 353
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.31 E-value=2.3e-12 Score=115.63 Aligned_cols=73 Identities=15% Similarity=0.378 Sum_probs=66.6
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEEe
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLRA 406 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~~ 406 (681)
..++|||+|| .+|+++|+++|++||.|..|.|. .++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 4689999996 69999999999999999999985 468999999999999999999999999999999998764
Q ss_pred c
Q 005712 407 R 407 (681)
Q Consensus 407 ~ 407 (681)
.
T Consensus 110 ~ 110 (121)
T 2bz2_A 110 K 110 (121)
T ss_dssp S
T ss_pred C
Confidence 3
No 354
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.29 E-value=3e-12 Score=114.88 Aligned_cols=77 Identities=19% Similarity=0.372 Sum_probs=69.3
Q ss_pred ccCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCCC
Q 005712 146 KIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGTA 225 (681)
Q Consensus 146 ~~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v~ 225 (681)
.....++|||+|| ++|+++|+++|++||.|..|+|. .++|||||+|.+.++|.+||+.|++..|.|+.|.|.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3457899999996 79999999999999999999995 578999999999999999999999999999999988
Q ss_pred CCCCC
Q 005712 226 PSEDN 230 (681)
Q Consensus 226 ~~~~~ 230 (681)
.+...
T Consensus 107 ~a~~~ 111 (121)
T 2bz2_A 107 IARKQ 111 (121)
T ss_dssp ECCSS
T ss_pred EeCCC
Confidence 77643
No 355
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=4.3e-12 Score=106.97 Aligned_cols=68 Identities=16% Similarity=0.406 Sum_probs=57.2
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee--cCCeeEEE
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF--SDGNSKVK 403 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~--~g~~i~v~ 403 (681)
..++|||+|||+.+|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++| ++..+ .++.|.|.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~----~~~~~~~~g~~l~v~ 73 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSL----CGEDLIIKGISVHIS 73 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHT----TTCEEEETTEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHH----hcCCceeCCEEEEEE
Confidence 3589999999999999999999999999999999865 689999999999999754 45455 56554444
No 356
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.29 E-value=4.9e-12 Score=113.42 Aligned_cols=74 Identities=18% Similarity=0.160 Sum_probs=65.3
Q ss_pred CEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccce-EEEEecchhHHHHHHHhcCCCeeec--cccCCCCC
Q 005712 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGY-AFVKFANKEHAKRALTEMKNPVICG--KRCGTAPS 227 (681)
Q Consensus 151 ~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~-aFVeF~~~e~A~~Al~~l~g~~l~G--r~i~v~~~ 227 (681)
..|||+||++.+|+++|+++|++||.|..|+|+.. .|| |||+|.+.++|.+|++.||+..|.| +.|+|..+
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 35689999999999999999999999999999652 286 9999999999999999999999988 57888777
Q ss_pred CCC
Q 005712 228 EDN 230 (681)
Q Consensus 228 ~~~ 230 (681)
...
T Consensus 100 k~~ 102 (124)
T 2e5i_A 100 RPT 102 (124)
T ss_dssp SCS
T ss_pred cCC
Confidence 643
No 357
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.29 E-value=6.7e-12 Score=111.79 Aligned_cols=79 Identities=16% Similarity=0.255 Sum_probs=69.6
Q ss_pred cceeeeecCCCC--C---CCHHHHHhhhcccCcEEEEEEeecCC----CCCcceEEEEEeCCHHHHHHHHHHhCCceecC
Q 005712 327 HVKTVFLDGVPP--H---WKENQIRDQIKGYGDVIRIVLARNMS----TAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397 (681)
Q Consensus 327 ~~~~l~V~nLp~--~---~t~~~L~~~F~~~G~v~~v~i~~d~~----~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g 397 (681)
.+++|+|.||-. + -.+++|+++|++||.|..|.|+++.. +++++||+||+|.+.++|.+|+..|||+.|.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 467999999843 2 23689999999999999999998864 46788999999999999999999999999999
Q ss_pred CeeEEEEE
Q 005712 398 GNSKVKLR 405 (681)
Q Consensus 398 ~~i~v~~~ 405 (681)
|.|.|.+.
T Consensus 99 R~i~v~~~ 106 (118)
T 3ue2_A 99 RKVVAEVY 106 (118)
T ss_dssp EECEEEEE
T ss_pred cEEEEEEc
Confidence 99999875
No 358
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.27 E-value=4.5e-12 Score=126.47 Aligned_cols=80 Identities=25% Similarity=0.370 Sum_probs=69.6
Q ss_pred ccceeeeecCCCCCC---------CHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee-
Q 005712 326 AHVKTVFLDGVPPHW---------KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF- 395 (681)
Q Consensus 326 ~~~~~l~V~nLp~~~---------t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~- 395 (681)
...++|||+||+..+ ++++|+++|++||.|..|.|+. ++|||||+|.+.++|+.|+++|||..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 346899999999998 7999999999999999999985 489999999999999999999999999
Q ss_pred -----------cCCeeEEEEEeccCCC
Q 005712 396 -----------SDGNSKVKLRARLSNP 411 (681)
Q Consensus 396 -----------~g~~i~v~~~~~~~~~ 411 (681)
.|+.|.|.++....++
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC-----
T ss_pred ccccccccccCCCCEEEEEEccCCCCH
Confidence 8999999987655444
No 359
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.25 E-value=7.4e-12 Score=124.91 Aligned_cols=77 Identities=27% Similarity=0.467 Sum_probs=70.0
Q ss_pred cCCCCEEEEcCCCccC---------CHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCee
Q 005712 147 IKKEHEIFIGGLDRDA---------TQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI 217 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~---------teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l 217 (681)
....++|||+||+..+ |+++|+++|++||+|++|+|+. ++|||||+|.+.++|++|+++|++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3467899999999998 8999999999999999999985 489999999999999999999999999
Q ss_pred ------------eccccCCCCCCC
Q 005712 218 ------------CGKRCGTAPSED 229 (681)
Q Consensus 218 ------------~Gr~i~v~~~~~ 229 (681)
.|+.|.|.++..
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC-
T ss_pred eccccccccccCCCCEEEEEEccC
Confidence 899998887764
No 360
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.24 E-value=3.4e-12 Score=111.23 Aligned_cols=72 Identities=18% Similarity=0.343 Sum_probs=62.3
Q ss_pred ecCCCCCCCHHHHHhhh------------cccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCee
Q 005712 333 LDGVPPHWKENQIRDQI------------KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNS 400 (681)
Q Consensus 333 V~nLp~~~t~~~L~~~F------------~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i 400 (681)
+.||++.+++++|++.| ++||.|..|.|+++. +++++|||||+|.+.++|.+|+..|||+.|.|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45677777777666555 999999999999885 47899999999999999999999999999999999
Q ss_pred EEEEE
Q 005712 401 KVKLR 405 (681)
Q Consensus 401 ~v~~~ 405 (681)
+|.+.
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 88763
No 361
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.24 E-value=1.8e-11 Score=126.25 Aligned_cols=79 Identities=14% Similarity=0.368 Sum_probs=72.7
Q ss_pred cceeeeecCCCCCCCHHHHH----hhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEE
Q 005712 327 HVKTVFLDGVPPHWKENQIR----DQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 402 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~----~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v 402 (681)
..++|||+|||+.+|+++|+ ++|++||.|..|.|++ +++++|||||+|.+.++|.+||+.|||..|.|+.|+|
T Consensus 8 ~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 46899999999999999977 8999999999999986 5789999999999999999999999999999999999
Q ss_pred EEEecc
Q 005712 403 KLRARL 408 (681)
Q Consensus 403 ~~~~~~ 408 (681)
.+....
T Consensus 85 ~~a~~~ 90 (282)
T 3pgw_A 85 QYAKTD 90 (282)
T ss_pred EEeccC
Confidence 887443
No 362
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=1.9e-11 Score=108.06 Aligned_cols=76 Identities=14% Similarity=0.297 Sum_probs=65.4
Q ss_pred cceeeeecCCCCCC-----------CHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 005712 327 HVKTVFLDGVPPHW-----------KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEF 395 (681)
Q Consensus 327 ~~~~l~V~nLp~~~-----------t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~ 395 (681)
.+++|+|+||.... ++++|+++|++||.|..|.| .+. .++|||||+|.+.++|.+||..|||+.|
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 46899999995433 25899999999999999966 443 3799999999999999999999999999
Q ss_pred cCCeeEEEEEe
Q 005712 396 SDGNSKVKLRA 406 (681)
Q Consensus 396 ~g~~i~v~~~~ 406 (681)
.|+.|.|.+..
T Consensus 90 ~gr~l~v~~a~ 100 (112)
T 2dit_A 90 GGRQITAQAWD 100 (112)
T ss_dssp TTEECEEEECC
T ss_pred CCcEEEEEEeC
Confidence 99999988753
No 363
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=1.9e-11 Score=108.00 Aligned_cols=84 Identities=17% Similarity=0.295 Sum_probs=70.5
Q ss_pred ccCCCCEEEEcCCCccC-----------CHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCC
Q 005712 146 KIKKEHEIFIGGLDRDA-----------TQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKN 214 (681)
Q Consensus 146 ~~~~~~tVfV~NLp~~~-----------teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g 214 (681)
....+++|+|+||.... ++++|+++|++||.|..|.| .++ .++|||||+|.+.++|.+|++.||+
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 34578999999994433 26899999999999999966 553 3899999999999999999999999
Q ss_pred CeeeccccCCCCCCCCCcc
Q 005712 215 PVICGKRCGTAPSEDNDTL 233 (681)
Q Consensus 215 ~~l~Gr~i~v~~~~~~~~L 233 (681)
..|.|+.|.|..+......
T Consensus 87 ~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp CEETTEECEEEECCSCCCS
T ss_pred CEECCcEEEEEEeCCCCCc
Confidence 9999999999887654443
No 364
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.21 E-value=1.9e-11 Score=106.70 Aligned_cols=80 Identities=15% Similarity=0.216 Sum_probs=69.3
Q ss_pred CCCCEEEEcCC--CccC--------CHHHHHHHHhhcCCeEEEEEeecCCC--CCccceEEEEecchhHHHHHHHhcCCC
Q 005712 148 KKEHEIFIGGL--DRDA--------TQEDVRKVFERIGEVIEVRLHKNFST--NRNKGYAFVKFANKEHAKRALTEMKNP 215 (681)
Q Consensus 148 ~~~~tVfV~NL--p~~~--------teedL~~~F~~~G~V~~v~i~~d~~t--g~skG~aFVeF~~~e~A~~Al~~l~g~ 215 (681)
.++++|.|.|+ |.++ ++++|+++|++||.|++|+|++++.+ ++++|+|||+|.+.++|.+|++.||+.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 36789999998 4344 34789999999999999999988765 468999999999999999999999999
Q ss_pred eeeccccCCCCC
Q 005712 216 VICGKRCGTAPS 227 (681)
Q Consensus 216 ~l~Gr~i~v~~~ 227 (681)
.+.||.|.+...
T Consensus 83 ~f~GR~i~v~~~ 94 (105)
T 3v4m_A 83 KFANRVVVTKYC 94 (105)
T ss_dssp EETTEECEEEEE
T ss_pred EeCCCEEEEEEe
Confidence 999999877644
No 365
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.16 E-value=1.2e-11 Score=107.84 Aligned_cols=72 Identities=25% Similarity=0.443 Sum_probs=61.0
Q ss_pred EcCCCccCCHHHHHHHH------------hhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeecccc
Q 005712 155 IGGLDRDATQEDVRKVF------------ERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRC 222 (681)
Q Consensus 155 V~NLp~~~teedL~~~F------------~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i 222 (681)
+.|||+.+|+++|+++| ++||+|.+|+|+++. +++++|||||+|.+.++|++|++.||+..+.|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45566666777666555 999999999999885 47899999999999999999999999999999999
Q ss_pred CCCCC
Q 005712 223 GTAPS 227 (681)
Q Consensus 223 ~v~~~ 227 (681)
.|..+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 87543
No 366
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.15 E-value=4.5e-11 Score=106.42 Aligned_cols=79 Identities=13% Similarity=0.197 Sum_probs=69.4
Q ss_pred CCCEEEEcCCCc--c---CCHHHHHHHHhhcCCeEEEEEeecCC----CCCccceEEEEecchhHHHHHHHhcCCCeeec
Q 005712 149 KEHEIFIGGLDR--D---ATQEDVRKVFERIGEVIEVRLHKNFS----TNRNKGYAFVKFANKEHAKRALTEMKNPVICG 219 (681)
Q Consensus 149 ~~~tVfV~NLp~--~---~teedL~~~F~~~G~V~~v~i~~d~~----tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~G 219 (681)
++++|+|+|+-. + -.+++|++.|++||+|.+|+|++++. +++++|++||+|.+.++|.+|++.||+..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 789999999942 2 34789999999999999999999864 45788999999999999999999999999999
Q ss_pred cccCCCCC
Q 005712 220 KRCGTAPS 227 (681)
Q Consensus 220 r~i~v~~~ 227 (681)
|.|.+...
T Consensus 99 R~i~v~~~ 106 (118)
T 3ue2_A 99 RKVVAEVY 106 (118)
T ss_dssp EECEEEEE
T ss_pred cEEEEEEc
Confidence 99877544
No 367
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=3.2e-10 Score=97.71 Aligned_cols=61 Identities=20% Similarity=0.376 Sum_probs=54.1
Q ss_pred CCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 338 PHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 338 ~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
..+++++|+++|++||.|..|.|+ ++++|||||+|++.++|.+||..+++ +.++.|+|.+.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a 87 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWL 87 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECS
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEc
Confidence 468999999999999999999997 36899999999999999999988654 67899888764
No 368
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.06 E-value=2.7e-10 Score=100.62 Aligned_cols=75 Identities=16% Similarity=0.235 Sum_probs=64.4
Q ss_pred ceeeeecCCCCCC----------CHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC
Q 005712 328 VKTVFLDGVPPHW----------KENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSD 397 (681)
Q Consensus 328 ~~~l~V~nLp~~~----------t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g 397 (681)
+++|.|.|+-... .+++|+++|++||.|..|.|.++. ++|||||+|.+.++|.+|++.|||+.|.|
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 5678888874321 236899999999999999997663 58999999999999999999999999999
Q ss_pred CeeEEEEEe
Q 005712 398 GNSKVKLRA 406 (681)
Q Consensus 398 ~~i~v~~~~ 406 (681)
+.|.|.+..
T Consensus 83 R~i~v~~~~ 91 (114)
T 3s6e_A 83 KMITAAYVP 91 (114)
T ss_dssp EECEEEEEC
T ss_pred EEEEEEEEc
Confidence 999999863
No 369
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=9.2e-10 Score=94.81 Aligned_cols=74 Identities=16% Similarity=0.209 Sum_probs=62.3
Q ss_pred CCCEEEEcCCC-------ccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccc
Q 005712 149 KEHEIFIGGLD-------RDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKR 221 (681)
Q Consensus 149 ~~~tVfV~NLp-------~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~ 221 (681)
...+|.|.-.. ..+|+++|+++|++||+|..|+|+ ++++|||||+|.+.++|.+||+.+++ +.+++
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~ 81 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNP 81 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSB
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCe
Confidence 45677777665 458999999999999999999997 36899999999999999999998544 67888
Q ss_pred cCCCCCCC
Q 005712 222 CGTAPSED 229 (681)
Q Consensus 222 i~v~~~~~ 229 (681)
|.|.++..
T Consensus 82 l~V~~a~~ 89 (100)
T 2d9o_A 82 LKISWLEG 89 (100)
T ss_dssp CEEECSSC
T ss_pred EEEEEccC
Confidence 88877654
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.98 E-value=6.5e-10 Score=116.78 Aligned_cols=64 Identities=19% Similarity=0.288 Sum_probs=58.2
Q ss_pred cceeeeecC--CCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec
Q 005712 327 HVKTVFLDG--VPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFS 396 (681)
Q Consensus 327 ~~~~l~V~n--Lp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~ 396 (681)
.+++|||+| |++.+|+++|+++|++||.|..|.++. +||||||+|++.++|++||++|||+.+.
T Consensus 17 ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 17 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp CCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 468999999 578999999999999999999988753 4799999999999999999999999984
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.97 E-value=6.6e-10 Score=116.75 Aligned_cols=66 Identities=20% Similarity=0.386 Sum_probs=59.6
Q ss_pred cCCCCEEEEcC--CCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeee
Q 005712 147 IKKEHEIFIGG--LDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVIC 218 (681)
Q Consensus 147 ~~~~~tVfV~N--Lp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~ 218 (681)
..++++|||+| |++.+|+++|+++|++||+|.+|+|.. +||||||+|.+.++|++|+++||+..+.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 45788999999 578999999999999999999987743 5799999999999999999999999884
No 372
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.88 E-value=3.6e-09 Score=93.66 Aligned_cols=73 Identities=14% Similarity=0.118 Sum_probs=65.6
Q ss_pred ccceeeeecCCCCC-CCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCC-HHHHHHHHHHhC--CceecCCeeE
Q 005712 326 AHVKTVFLDGVPPH-WKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFST-HEAAVACINAIN--NKEFSDGNSK 401 (681)
Q Consensus 326 ~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~-~~~A~~Ai~~ln--g~~~~g~~i~ 401 (681)
...+.|+|+||++. ++.++|+++|++||.|.+|.++++.. +|||+|.+ +.+|..|+.+|| +.+|.+..++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 35689999999999 99999999999999999999988854 49999999 899999999994 7889998877
Q ss_pred EEE
Q 005712 402 VKL 404 (681)
Q Consensus 402 v~~ 404 (681)
+++
T Consensus 90 ~ev 92 (121)
T 1owx_A 90 WEV 92 (121)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 373
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.85 E-value=3.6e-09 Score=93.41 Aligned_cols=76 Identities=20% Similarity=0.243 Sum_probs=64.2
Q ss_pred CCCCEEEEcCCCccC----------CHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCee
Q 005712 148 KKEHEIFIGGLDRDA----------TQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVI 217 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~----------teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l 217 (681)
.++++|.|.|+=... .+++|++.|++||.|++|.|.++ .++|+|||+|.+.++|.+|++.|||..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~----~~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN----SAQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT----CTTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC----CCcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 367889999984321 34678999999999999999765 2599999999999999999999999999
Q ss_pred eccccCCCCC
Q 005712 218 CGKRCGTAPS 227 (681)
Q Consensus 218 ~Gr~i~v~~~ 227 (681)
.|+.|.|..+
T Consensus 81 ~GR~i~v~~~ 90 (114)
T 3s6e_A 81 AGKMITAAYV 90 (114)
T ss_dssp TTEECEEEEE
T ss_pred CCEEEEEEEE
Confidence 9999876544
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.70 E-value=2.3e-08 Score=83.01 Aligned_cols=69 Identities=19% Similarity=0.395 Sum_probs=57.9
Q ss_pred eeeeecCCCC----CCCH----HHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCee
Q 005712 329 KTVFLDGVPP----HWKE----NQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNS 400 (681)
Q Consensus 329 ~~l~V~nLp~----~~t~----~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i 400 (681)
-+|+|.-++. ++-. .+|.+.|.+||.|..++|+.+. +||+|.+.++|.+||+ |||..+.|+.|
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr~L 78 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNRTI 78 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTEEE
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCeEE
Confidence 4666666552 2333 6799999999999999999874 8999999999999997 99999999999
Q ss_pred EEEEEe
Q 005712 401 KVKLRA 406 (681)
Q Consensus 401 ~v~~~~ 406 (681)
+|.++.
T Consensus 79 kV~lkt 84 (91)
T 2dnr_A 79 TIALKS 84 (91)
T ss_dssp EEEECC
T ss_pred EEEeCC
Confidence 998864
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.69 E-value=1.5e-08 Score=89.66 Aligned_cols=70 Identities=17% Similarity=0.188 Sum_probs=60.0
Q ss_pred cCCCCEEEEcCCCcc-CCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecc-hhHHHHHHHhcC--CCeeecccc
Q 005712 147 IKKEHEIFIGGLDRD-ATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFAN-KEHAKRALTEMK--NPVICGKRC 222 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~-~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~-~e~A~~Al~~l~--g~~l~Gr~i 222 (681)
....+.|+|+||+.+ ++.++|+++|++||+|..|.|+++.. +|||.|.+ .++|..|+.+|+ +..|.+..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 457899999999999 99999999999999999999988743 59999999 799999999884 455555443
No 376
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.61 E-value=5.8e-08 Score=96.31 Aligned_cols=67 Identities=18% Similarity=0.279 Sum_probs=60.0
Q ss_pred CCCHHHHHhhhcccCcEEEEEEeecCC----CCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEEEEE
Q 005712 339 HWKENQIRDQIKGYGDVIRIVLARNMS----TAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKVKLR 405 (681)
Q Consensus 339 ~~t~~~L~~~F~~~G~v~~v~i~~d~~----~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v~~~ 405 (681)
.-.+++|++.|++||.|..|.|+++.. +++++|++||+|.+.++|.+|+..|||+.|.||.|.|.+.
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~ 210 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY 210 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEc
Confidence 345689999999999999999986543 4589999999999999999999999999999999999874
No 377
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.58 E-value=5.6e-08 Score=80.67 Aligned_cols=72 Identities=15% Similarity=0.256 Sum_probs=60.4
Q ss_pred CCCEEEEcCCCc----cCCH----HHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeecc
Q 005712 149 KEHEIFIGGLDR----DATQ----EDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGK 220 (681)
Q Consensus 149 ~~~tVfV~NLp~----~~te----edL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr 220 (681)
+..||+|.-++. ..-. .+|.+.|++||+|..|+|+.++ +||+|.+.++|.+||+ |++..+.||
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 557888887762 2223 6689999999999999998873 8999999999999998 999999999
Q ss_pred ccCCCCCCC
Q 005712 221 RCGTAPSED 229 (681)
Q Consensus 221 ~i~v~~~~~ 229 (681)
.|+|..+.+
T Consensus 77 ~LkV~lkt~ 85 (91)
T 2dnr_A 77 TITIALKSP 85 (91)
T ss_dssp EEEEEECCC
T ss_pred EEEEEeCCC
Confidence 998876553
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.47 E-value=6.1e-08 Score=80.79 Aligned_cols=69 Identities=12% Similarity=0.270 Sum_probs=58.7
Q ss_pred ceeeeecCCCCC-----CCH----HHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCC
Q 005712 328 VKTVFLDGVPPH-----WKE----NQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDG 398 (681)
Q Consensus 328 ~~~l~V~nLp~~-----~t~----~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~ 398 (681)
.-+|+|.-++.. +-. .+|.+.|.+||.|..++|+.++ +||+|.+.++|.+||+ |||..+.||
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKGR 85 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCCe
Confidence 457888877642 222 5689999999999999999884 9999999999999997 999999999
Q ss_pred eeEEEEE
Q 005712 399 NSKVKLR 405 (681)
Q Consensus 399 ~i~v~~~ 405 (681)
.|+|.++
T Consensus 86 ~L~V~~k 92 (95)
T 1ufw_A 86 AVKISGP 92 (95)
T ss_dssp EEEEECC
T ss_pred EEEEecc
Confidence 9999865
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.41 E-value=1.7e-07 Score=78.11 Aligned_cols=71 Identities=13% Similarity=0.233 Sum_probs=60.2
Q ss_pred CCCCEEEEcCCCcc-----CCH----HHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeee
Q 005712 148 KKEHEIFIGGLDRD-----ATQ----EDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVIC 218 (681)
Q Consensus 148 ~~~~tVfV~NLp~~-----~te----edL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~ 218 (681)
.+..||+|.-++.. .-. .+|.+.|++||+|+.|+|+.++ +||+|.+.++|.+||+ |++..+.
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 46789999988742 222 5588999999999999999873 9999999999999998 9999999
Q ss_pred ccccCCCCC
Q 005712 219 GKRCGTAPS 227 (681)
Q Consensus 219 Gr~i~v~~~ 227 (681)
||.|+|...
T Consensus 84 Gr~L~V~~k 92 (95)
T 1ufw_A 84 GRAVKISGP 92 (95)
T ss_dssp TEEEEEECC
T ss_pred CeEEEEecc
Confidence 999987643
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.38 E-value=8.4e-07 Score=87.85 Aligned_cols=81 Identities=12% Similarity=0.183 Sum_probs=66.7
Q ss_pred cCCCCEEEEcCCCc-----cCCHHHHHHHHhhcCCeEEEEEeecC----CCCCccceEEEEecchhHHHHHHHhcCCCee
Q 005712 147 IKKEHEIFIGGLDR-----DATQEDVRKVFERIGEVIEVRLHKNF----STNRNKGYAFVKFANKEHAKRALTEMKNPVI 217 (681)
Q Consensus 147 ~~~~~tVfV~NLp~-----~~teedL~~~F~~~G~V~~v~i~~d~----~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l 217 (681)
......+.+.|+-. +-.+++|++.|++||.|.+|.|+++. .+++++|++||+|.+.++|++|+..|+|..+
T Consensus 121 ~~~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~ 200 (222)
T 3dxb_A 121 AMESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 200 (222)
T ss_dssp CCBCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred ccccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE
Confidence 33456667766642 34568899999999999999998654 4458999999999999999999999999999
Q ss_pred eccccCCCCC
Q 005712 218 CGKRCGTAPS 227 (681)
Q Consensus 218 ~Gr~i~v~~~ 227 (681)
.||.|.+...
T Consensus 201 ~gr~i~~~~~ 210 (222)
T 3dxb_A 201 AGRKVVAEVY 210 (222)
T ss_dssp SSSBCEEEEC
T ss_pred CCeEEEEEEc
Confidence 9999876554
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.06 E-value=6.8e-06 Score=69.76 Aligned_cols=70 Identities=14% Similarity=0.168 Sum_probs=64.9
Q ss_pred ceeeeecCCCCCCCHHHHHhhhccc-----CcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEE
Q 005712 328 VKTVFLDGVPPHWKENQIRDQIKGY-----GDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 402 (681)
Q Consensus 328 ~~~l~V~nLp~~~t~~~L~~~F~~~-----G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v 402 (681)
.++|-|-|||..+++..|+.+.+.+ |.|+.|.+..|. +-|+|+|.+...|.+|.-+|+|.+|.|+.|+|
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 4789999999999999999999999 999999999884 35999999999999999999999999999888
Q ss_pred E
Q 005712 403 K 403 (681)
Q Consensus 403 ~ 403 (681)
.
T Consensus 95 g 95 (117)
T 2l9w_A 95 G 95 (117)
T ss_dssp E
T ss_pred c
Confidence 5
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.95 E-value=2.1e-05 Score=66.78 Aligned_cols=77 Identities=14% Similarity=0.153 Sum_probs=67.2
Q ss_pred hhhhccCCCCEEEEcCCCccCCHHHHHHHHhhc-----CCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCe
Q 005712 142 AKDRKIKKEHEIFIGGLDRDATQEDVRKVFERI-----GEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPV 216 (681)
Q Consensus 142 ~~~~~~~~~~tVfV~NLp~~~teedL~~~F~~~-----G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~ 216 (681)
.........++|-|-|||-+++...|+.+.+.+ |.|+.|.+..| -+=|+|+|.+...|-+|.-+|+|..
T Consensus 13 ~s~~~~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~e 86 (117)
T 2l9w_A 13 ASRNSKELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQ 86 (117)
T ss_dssp HCCCTTTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEE
T ss_pred hccCCccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCee
Confidence 334445568999999999999999999999999 99999999877 3459999999999999999999999
Q ss_pred eeccccCC
Q 005712 217 ICGKRCGT 224 (681)
Q Consensus 217 l~Gr~i~v 224 (681)
|.|++|++
T Consensus 87 f~gr~Lr~ 94 (117)
T 2l9w_A 87 FQGKVIRS 94 (117)
T ss_dssp ETTEEEEE
T ss_pred ecCeEEEe
Confidence 99997754
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.75 E-value=0.00015 Score=61.09 Aligned_cols=87 Identities=16% Similarity=0.205 Sum_probs=71.5
Q ss_pred CCCCEEEEcCCCccCCHHHHHHHHhhc-----CCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeecccc
Q 005712 148 KKEHEIFIGGLDRDATQEDVRKVFERI-----GEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRC 222 (681)
Q Consensus 148 ~~~~tVfV~NLp~~~teedL~~~F~~~-----G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i 222 (681)
.-.++|.|.|||.++.++.|.-+|+.- |+|..|.... +.|+|+|.+.+.|++.|+. ....|.+..|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEE
Confidence 356799999999999999999999872 5899888843 4799999999999999974 3567788877
Q ss_pred CCCC--CCCCCcceeccccCccc
Q 005712 223 GTAP--SEDNDTLFVGNICNTWT 243 (681)
Q Consensus 223 ~v~~--~~~~~~L~VgnLp~~~t 243 (681)
.|.+ ..+..+|++.+|++.++
T Consensus 77 sV~P~~~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 77 SLRPAPPRAPARLLLQGLPPGTS 99 (104)
T ss_dssp EEEECCCCCCCCCCCCSCCCCCC
T ss_pred EEEcCCCCCcceEeeecCCCCCC
Confidence 7754 44578999999988764
No 384
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.63 E-value=0.0071 Score=50.27 Aligned_cols=70 Identities=16% Similarity=0.159 Sum_probs=57.7
Q ss_pred CEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCC--ccceEEEEecchhHHHHHHHhcCCCeeecc
Q 005712 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNR--NKGYAFVKFANKEHAKRALTEMKNPVICGK 220 (681)
Q Consensus 151 ~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~--skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr 220 (681)
..|-|++||+.+||+++.+.++....+.....+..+.+.. .-.-|||.|.+.+++....+.+++..+...
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 4789999999999999999999988888777766543322 224599999999999999999999887655
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.45 E-value=0.02 Score=48.21 Aligned_cols=90 Identities=14% Similarity=0.148 Sum_probs=66.8
Q ss_pred CCCcceeccccCcccHHHHHHHHhh---cCccceEEeeeccccccCCCcccEEEEEeCCHHHHHHHHHHhCCCCeeeCCC
Q 005712 229 DNDTLFVGNICNTWTKEAIKQKLKD---YGVEGVENINLVSDIQHEGLSRGFAFVMFSCHVDAMAAYKRLQKPDVVFGHP 305 (681)
Q Consensus 229 ~~~~L~VgnLp~~~te~~L~~~F~~---~G~~~v~~i~i~~d~~~tg~skG~aFV~F~s~e~A~~Al~~l~g~~~~~g~~ 305 (681)
...+|.|.|||..+.++.|.-+|+. .|-..|..+.... +-|+|+|.+...|...++. ....+ .
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---------~~AvItF~d~~va~rVL~k-~~H~L----~ 72 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---------CGGVLTFREPADAERVLAQ-ADHEL----H 72 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---------TEEEEEESSHHHHHHHHTC-SCCBS----S
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---------CcEEEEEcChHHHHHHhcC-Cccee----c
Confidence 4578999999999999999999998 3544588888754 3689999999999999863 12222 3
Q ss_pred CccceecccCCCCCCChhhcccceeeeecCCCCCCC
Q 005712 306 ERTVKVAFAEPLREPDPEIMAHVKTVFLDGVPPHWK 341 (681)
Q Consensus 306 gr~l~v~~a~~~~~~~~~~~~~~~~l~V~nLp~~~t 341 (681)
+.+|.|.-..+ ....+|++.+|+..++
T Consensus 73 ~~~LsV~P~~~---------~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 73 GAQLSLRPAPP---------RAPARLLLQGLPPGTS 99 (104)
T ss_dssp SSBCEEEECCC---------CCCCCCCCCSCCCCCC
T ss_pred CeEEEEEcCCC---------CCcceEeeecCCCCCC
Confidence 45666643322 2347999999999875
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.42 E-value=0.0028 Score=53.64 Aligned_cols=73 Identities=12% Similarity=0.104 Sum_probs=60.3
Q ss_pred ceeeeecCCCCCC-CH----HHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCeeEE
Q 005712 328 VKTVFLDGVPPHW-KE----NQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGNSKV 402 (681)
Q Consensus 328 ~~~l~V~nLp~~~-t~----~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~i~v 402 (681)
.++|+|.||+..+ .. +.++++|..|+.+....+.+.- .-..|.|.++++|.+|-..|++..|.|+.++|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4789999998865 32 5678999999988777776653 24789999999999999999999999999988
Q ss_pred EEEe
Q 005712 403 KLRA 406 (681)
Q Consensus 403 ~~~~ 406 (681)
-+..
T Consensus 79 YFgq 82 (104)
T 1wey_A 79 YFAQ 82 (104)
T ss_dssp ECCC
T ss_pred EecC
Confidence 8764
No 387
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.33 E-value=0.0065 Score=51.45 Aligned_cols=72 Identities=14% Similarity=0.170 Sum_probs=59.5
Q ss_pred CCEEEEcCCCccC-C----HHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeeccccCC
Q 005712 150 EHEIFIGGLDRDA-T----QEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICGKRCGT 224 (681)
Q Consensus 150 ~~tVfV~NLp~~~-t----eedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~i~v 224 (681)
.++|+|.||+.++ + .+.++++|.+|+++....+.+.. .=..|.|.+.++|.+|...|++..+.|+.|++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4789999999865 2 35788999999998888877542 24789999999999999999999999998865
Q ss_pred CCC
Q 005712 225 APS 227 (681)
Q Consensus 225 ~~~ 227 (681)
--+
T Consensus 79 YFg 81 (104)
T 1wey_A 79 YFA 81 (104)
T ss_dssp ECC
T ss_pred Eec
Confidence 443
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.33 E-value=0.013 Score=48.61 Aligned_cols=70 Identities=14% Similarity=0.283 Sum_probs=58.3
Q ss_pred eeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCC--CcceEEEEEeCCHHHHHHHHHHhCCceecCC
Q 005712 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTA--KRKDYGFIDFSTHEAAVACINAINNKEFSDG 398 (681)
Q Consensus 329 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g--~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~ 398 (681)
++|.|++||..+|++++.+.+.....+.....+..+.+. ..-..|+|.|.+.+++..-.+.++|+.|.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 579999999999999999999999888777776554332 2335699999999999999999999988764
No 389
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.73 E-value=0.014 Score=48.80 Aligned_cols=56 Identities=18% Similarity=0.423 Sum_probs=46.5
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~ln 391 (681)
+...++| ++|.++...||.++|+.||. ..|..+-|. -|||.|.+++.|..|+..++
T Consensus 5 R~HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 5 SDHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred CCeEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 3467777 99999999999999999994 346666553 59999999999999998775
No 390
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.72 E-value=0.014 Score=48.53 Aligned_cols=55 Identities=16% Similarity=0.407 Sum_probs=45.5
Q ss_pred ceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 005712 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAIN 391 (681)
Q Consensus 328 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~ln 391 (681)
.+.++| ++|.++...||.++|+.||.|. |..+-|. -|||.|.+++.|..|+..++
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 467777 9999999999999999998543 5555553 59999999999999998764
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.53 E-value=0.021 Score=47.54 Aligned_cols=56 Identities=18% Similarity=0.428 Sum_probs=46.5
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMK 213 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~ 213 (681)
..+.++| ++|......||.++|+.||-| .|+.+-| ..|||.|.+.+.|..||..+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 4556666 999999999999999999954 5666655 269999999999999998763
No 392
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.31 E-value=0.028 Score=46.91 Aligned_cols=54 Identities=22% Similarity=0.407 Sum_probs=44.9
Q ss_pred CEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcC
Q 005712 151 HEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMK 213 (681)
Q Consensus 151 ~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~ 213 (681)
..++| ++|.+....||.++|+.|| =..|+.+-| ..|||.|.+.+.|..||..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 34555 9999999999999999999 345666655 269999999999999998764
No 393
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.23 E-value=0.053 Score=47.17 Aligned_cols=63 Identities=11% Similarity=0.294 Sum_probs=52.7
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcCCCeeec
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMKNPVICG 219 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~g~~l~G 219 (681)
..+.|-|-+.|... ...|..+|++||.|++.... ....+-.|.|.+..+|++||. .|+..|.+
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g 85 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALS-KDGRIFGE 85 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHT-TTTCEETT
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHH-hCCeEecC
Confidence 46789999999985 56788999999999988872 234689999999999999997 48888864
No 394
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.18 E-value=0.065 Score=46.59 Aligned_cols=65 Identities=17% Similarity=0.282 Sum_probs=52.4
Q ss_pred cceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCCe
Q 005712 327 HVKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINNKEFSDGN 399 (681)
Q Consensus 327 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~~ 399 (681)
..+.|.|-+.|... ...|...|++||.|....... ...+-.|.|.+..+|++|| ..||..|.+..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~ 87 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKAL-SKDGRIFGESI 87 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHH-TTTTCEETTTE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHH-HhCCeEecCCE
Confidence 35788899999875 567888899999999888621 2347899999999999999 56999998643
No 395
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.10 E-value=0.0053 Score=66.49 Aligned_cols=71 Identities=17% Similarity=0.327 Sum_probs=50.4
Q ss_pred HHHhhHHhhhhccCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHh
Q 005712 135 RRELNAIAKDRKIKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTE 211 (681)
Q Consensus 135 ~~~~~~~~~~~~~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~ 211 (681)
++........++....++|+|. .|..+++.+|.++|++||+|.++.+..+. .-||.|+|.+.+++.+++..
T Consensus 38 ~~~~~~~~~~r~~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 38 KRRFSEMQNERREQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp --CCHHHHHHHHHHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSS
T ss_pred CCCHHHHHHHHHHHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhc
Confidence 3344444445555567899998 79999999999999999999999887542 26999999999999988764
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.55 E-value=0.035 Score=46.40 Aligned_cols=73 Identities=11% Similarity=0.098 Sum_probs=52.5
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCC--ccceEEEEecchhHHHHHHHhcCCCeeeccc
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNR--NKGYAFVKFANKEHAKRALTEMKNPVICGKR 221 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~--skG~aFVeF~~~e~A~~Al~~l~g~~l~Gr~ 221 (681)
.+-.|-|+.||+.+||+++.+.++.+=++.....+....+.. .-.-|||.|.+.+++....+..++..+...+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~k 82 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSK 82 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTT
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCC
Confidence 456799999999999999887777654444433332222211 1235999999999999999999998876653
No 397
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.39 E-value=0.11 Score=43.53 Aligned_cols=71 Identities=13% Similarity=0.200 Sum_probs=52.9
Q ss_pred ceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCC--CcceEEEEEeCCHHHHHHHHHHhCCceecCC
Q 005712 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTA--KRKDYGFIDFSTHEAAVACINAINNKEFSDG 398 (681)
Q Consensus 328 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g--~~rG~aFV~F~~~~~A~~Ai~~lng~~~~g~ 398 (681)
+-+|.|+.||+.+|++++.+.++..=.+.....+....+. ..-..|+|.|.+.+++..-.+.++|..|-+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 4589999999999999999888876555443333322221 1223589999999999999999999988764
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=91.87 E-value=0.09 Score=46.36 Aligned_cols=74 Identities=19% Similarity=0.314 Sum_probs=50.4
Q ss_pred CCCEEEEcCCCccCCHHHHHHHHhhcCCeEE-EEEeec--------CCCC-----CccceEEEEecchhHHHHHHHhcCC
Q 005712 149 KEHEIFIGGLDRDATQEDVRKVFERIGEVIE-VRLHKN--------FSTN-----RNKGYAFVKFANKEHAKRALTEMKN 214 (681)
Q Consensus 149 ~~~tVfV~NLp~~~teedL~~~F~~~G~V~~-v~i~~d--------~~tg-----~skG~aFVeF~~~e~A~~Al~~l~g 214 (681)
....|.|-+.|...+. .|...|++||.|.+ +.+... +.+. ....+..|+|.+..+|++||. .|+
T Consensus 6 ~e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 4567888899876554 67889999999866 211110 0000 134678999999999999997 599
Q ss_pred CeeeccccCC
Q 005712 215 PVICGKRCGT 224 (681)
Q Consensus 215 ~~l~Gr~i~v 224 (681)
.+|.|.-|-|
T Consensus 84 ~ii~G~mIGV 93 (132)
T 3p3d_A 84 AVFNGVLLGV 93 (132)
T ss_dssp CEETTEECEE
T ss_pred eEeCcEEEEE
Confidence 9988864433
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=89.02 E-value=0.17 Score=54.79 Aligned_cols=54 Identities=17% Similarity=0.335 Sum_probs=41.0
Q ss_pred ceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q 005712 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACI 387 (681)
Q Consensus 328 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai 387 (681)
.++|+|. .|..+++.+|.++|++||.|..+....+. .-||.|+|.+.+++.+++
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~ 106 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQ 106 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHH
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHH
Confidence 4689997 79999999999999999999999887652 259999999999888765
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=88.94 E-value=0.4 Score=42.27 Aligned_cols=73 Identities=15% Similarity=0.245 Sum_probs=50.5
Q ss_pred eeeeecCCCCCCCHHHHHhhhcccCcEEE-EEEeecCC--------CC-----CcceEEEEEeCCHHHHHHHHHHhCCce
Q 005712 329 KTVFLDGVPPHWKENQIRDQIKGYGDVIR-IVLARNMS--------TA-----KRKDYGFIDFSTHEAAVACINAINNKE 394 (681)
Q Consensus 329 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~-v~i~~d~~--------~g-----~~rG~aFV~F~~~~~A~~Ai~~lng~~ 394 (681)
..|.|-+.|...++ .+.+.|++||.|.. +.+.+... .. .......|+|++..+|.+|| ..||+.
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGAV 85 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTCE
T ss_pred eEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCeE
Confidence 56778888766544 56678999999865 22211000 00 12457799999999999999 679999
Q ss_pred ecCCeeEEE
Q 005712 395 FSDGNSKVK 403 (681)
Q Consensus 395 ~~g~~i~v~ 403 (681)
|.|..|=|.
T Consensus 86 i~G~mIGV~ 94 (132)
T 3p3d_A 86 FNGVLLGVI 94 (132)
T ss_dssp ETTEECEEE
T ss_pred eCcEEEEEE
Confidence 999765554
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=69.88 E-value=7.1 Score=42.82 Aligned_cols=56 Identities=16% Similarity=0.418 Sum_probs=45.0
Q ss_pred ceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 005712 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAINN 392 (681)
Q Consensus 328 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~lng 392 (681)
...++|+ +|..+...+|.+.|+.||.| .|.++.+. .|||.|.+.+.|..++..++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHHh
Confidence 4567776 88899999999999999954 45554442 599999999999999998853
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=65.36 E-value=8.8 Score=42.07 Aligned_cols=55 Identities=18% Similarity=0.419 Sum_probs=45.0
Q ss_pred CCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhcC
Q 005712 150 EHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEMK 213 (681)
Q Consensus 150 ~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l~ 213 (681)
...++|+ +|..+...+|.++|+.||.| +|+.+.+ ..|||.|.+.+.|..+|++++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 4566666 88899999999999999954 5665443 369999999999999999875
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=32.18 E-value=2e+02 Score=23.11 Aligned_cols=58 Identities=19% Similarity=0.306 Sum_probs=47.7
Q ss_pred cCCCCEEEEcCCCccCCHHHHHHHHhhcCCeEEEEEeecCCCCCccceEEEEecchhHHHHHHHhc
Q 005712 147 IKKEHEIFIGGLDRDATQEDVRKVFERIGEVIEVRLHKNFSTNRNKGYAFVKFANKEHAKRALTEM 212 (681)
Q Consensus 147 ~~~~~tVfV~NLp~~~teedL~~~F~~~G~V~~v~i~~d~~tg~skG~aFVeF~~~e~A~~Al~~l 212 (681)
.+..+.|.|-|+|..+-..++.-.....|--..|..+ .|-|.|.|.+.++...|+..|
T Consensus 9 ikqnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 9 IKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp -CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHH
T ss_pred hhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHH
Confidence 4467899999999999999988777788877777765 356999999999999998775
No 404
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=28.85 E-value=27 Score=20.81 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=14.5
Q ss_pred CcccccccccCCCCCCCCCCCCCCCC
Q 005712 569 HGVKRSFHVMDHEPDYMGPRRFRPRL 594 (681)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (681)
++-|||. +||-+ -+|||-|-||
T Consensus 6 rprkrpl---ewded-eepprkrkrl 27 (28)
T 3ukw_C 6 RPRKRPL---EWDED-EEPPRKRKRL 27 (28)
T ss_dssp -CCCCCC---CCCGG-GSCCSSCCCC
T ss_pred ccccCCc---ccccc-cCcchhhhcc
Confidence 4567887 66554 3688888775
No 405
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=28.53 E-value=12 Score=38.98 Aligned_cols=13 Identities=0% Similarity=-0.087 Sum_probs=8.0
Q ss_pred CCCHHHHHhhhcc
Q 005712 339 HWKENQIRDQIKG 351 (681)
Q Consensus 339 ~~t~~~L~~~F~~ 351 (681)
.+++++|+++...
T Consensus 228 ~vt~~~l~~i~~~ 240 (358)
T 2pk2_A 228 TVTLELLDELTHE 240 (358)
T ss_dssp SCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 4567777766553
No 406
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=21.94 E-value=3.1e+02 Score=21.96 Aligned_cols=55 Identities=9% Similarity=0.093 Sum_probs=44.9
Q ss_pred ceeeeecCCCCCCCHHHHHhhhcccCcEEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 005712 328 VKTVFLDGVPPHWKENQIRDQIKGYGDVIRIVLARNMSTAKRKDYGFIDFSTHEAAVACINAI 390 (681)
Q Consensus 328 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~~A~~Ai~~l 390 (681)
.+-+-|-|+|..+-..++--.....|---.|..+. |-|.|.|.+.++..-||..|
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHH
Confidence 46678899999998888877777788766777653 45999999999999999887
No 407
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=20.08 E-value=1.5e+02 Score=27.22 Aligned_cols=50 Identities=12% Similarity=0.235 Sum_probs=34.8
Q ss_pred eeeeecCCCC-C--------CCHHHHHhhh--cccCcEEEEEEeecCCCCCcceEEEEEeCCHH
Q 005712 329 KTVFLDGVPP-H--------WKENQIRDQI--KGYGDVIRIVLARNMSTAKRKDYGFIDFSTHE 381 (681)
Q Consensus 329 ~~l~V~nLp~-~--------~t~~~L~~~F--~~~G~v~~v~i~~d~~~g~~rG~aFV~F~~~~ 381 (681)
..+.|-|+|. . .+...|++.| ..|.++. |..+... ..++|+|.|+|.+-.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw 73 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDW 73 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCCh
Confidence 4667777776 2 3447899977 8998766 4444443 347899999998743
Done!